BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009530
(532 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225451285|ref|XP_002272750.1| PREDICTED: multisubstrate pseudouridine synthase 7-like [Vitis
vinifera]
Length = 694
Score = 807 bits (2084), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/531 (72%), Positives = 448/531 (84%)
Query: 2 GRNSKKRKERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSF 61
GRNS+KRK+R D PFDSRGS+NW E +GKFLRFHLYKENKDTQEA+GLI KMLGI PRSF
Sbjct: 161 GRNSRKRKDRRDKPFDSRGSDNWSEHVGKFLRFHLYKENKDTQEAIGLIGKMLGIQPRSF 220
Query: 62 GFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTI 121
GFAGTKDKRSVSTQRVTVFKQ A++LAALN+RLIGI++GDFC+V+EGL+LGQLLGNRFTI
Sbjct: 221 GFAGTKDKRSVSTQRVTVFKQHANRLAALNERLIGIKVGDFCHVREGLVLGQLLGNRFTI 280
Query: 122 TLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMI 181
TLRGVV DSE+ IKASA++LGR GFINYFGLQRFGSGSVPTHL+GA LLRGEW++AV +I
Sbjct: 281 TLRGVVADSEETIKASADALGRLGFINYFGLQRFGSGSVPTHLIGAALLRGEWETAVSLI 340
Query: 182 LDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIP 241
LDPREGER+ I KAREYYKE+DDI+GTLR+ PRHLVAERAILQCLKK PGNYLQALKAIP
Sbjct: 341 LDPREGERDAIRKAREYYKESDDIEGTLRQFPRHLVAERAILQCLKKYPGNYLQALKAIP 400
Query: 242 RTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYES 301
RTLRMMYVHSYQS+LWNHAAS RVQ +GT+ VV+GDLV+CKGD+ EK VN EF+ +
Sbjct: 401 RTLRMMYVHSYQSYLWNHAASMRVQNYGTKQVVLGDLVYCKGDNAEKVTRVVNSEFDDDG 460
Query: 302 SNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDV 361
+DA DSSH DE+ ETD P+ R++ VK + A D+ +G YTIDDVVLPLPGSR IYP ND+
Sbjct: 461 CSDAFDSSHFDEISETDLPEERNDPVKALDAEDLLTGNYTIDDVVLPLPGSRAIYPTNDI 520
Query: 362 AEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAE 421
A+VYH A+KD I+LTES H+VKEFSIT+MTG +RRVFQKP+DFEWELLTY +GN PLAE
Sbjct: 521 AQVYHDFAKKDAISLTESAHSVKEFSITNMTGGFRRVFQKPIDFEWELLTYTEGNIPLAE 580
Query: 422 TDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQ 481
TD DKI K+K NI+ E++ GN++++ CMKQSES ++ LST+NNE E+
Sbjct: 581 TDWDKITKSKPSNIIGGEDSRNGNEKENSFQCMKQSESFEHNVNLSTDNNEPNGVTEIGL 640
Query: 482 PHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
P VE + + Q ALKL TLP+SCYATMAIRELLKTSTSVAF KTLN
Sbjct: 641 PQVEPQFESGAPEAQRALKLSFTLPASCYATMAIRELLKTSTSVAFQKTLN 691
>gi|298204887|emb|CBI34194.3| unnamed protein product [Vitis vinifera]
Length = 693
Score = 795 bits (2052), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/531 (71%), Positives = 446/531 (83%), Gaps = 1/531 (0%)
Query: 2 GRNSKKRKERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSF 61
GRNS+KRK+R D PFDSRGS+NW E +GKFLRFHLYKENKDTQEA+GLI KMLGI PRSF
Sbjct: 161 GRNSRKRKDRRDKPFDSRGSDNWSEHVGKFLRFHLYKENKDTQEAIGLIGKMLGIQPRSF 220
Query: 62 GFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTI 121
GFAGTKDKRSVSTQRVTVFKQ A++LAALN+RLIGI++GDFC+V+EGL+LGQLLGNRFTI
Sbjct: 221 GFAGTKDKRSVSTQRVTVFKQHANRLAALNERLIGIKVGDFCHVREGLVLGQLLGNRFTI 280
Query: 122 TLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMI 181
TLRGVV DSE+ IKASA++LGR GFINYFGLQRFGSGSVPTHL+GA LLRGEW++AV +I
Sbjct: 281 TLRGVVADSEETIKASADALGRLGFINYFGLQRFGSGSVPTHLIGAALLRGEWETAVSLI 340
Query: 182 LDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIP 241
LDPREG+ + KAREYYKE+DDI+GTLR+ PRHLVAERAILQCLKK PGNYLQALKAIP
Sbjct: 341 LDPREGDI-LLLKAREYYKESDDIEGTLRQFPRHLVAERAILQCLKKYPGNYLQALKAIP 399
Query: 242 RTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYES 301
RTLRMMYVHSYQS+LWNHAAS RVQ +GT+ VV+GDLV+CKGD+ EK VN EF+ +
Sbjct: 400 RTLRMMYVHSYQSYLWNHAASMRVQNYGTKQVVLGDLVYCKGDNAEKVTRVVNSEFDDDG 459
Query: 302 SNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDV 361
+DA DSSH DE+ ETD P+ R++ VK + A D+ +G YTIDDVVLPLPGSR IYP ND+
Sbjct: 460 CSDAFDSSHFDEISETDLPEERNDPVKALDAEDLLTGNYTIDDVVLPLPGSRAIYPTNDI 519
Query: 362 AEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAE 421
A+VYH A+KD I+LTES H+VKEFSIT+MTG +RRVFQKP+DFEWELLTY +GN PLAE
Sbjct: 520 AQVYHDFAKKDAISLTESAHSVKEFSITNMTGGFRRVFQKPIDFEWELLTYTEGNIPLAE 579
Query: 422 TDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQ 481
TD DKI K+K NI+ E++ GN++++ CMKQSES ++ LST+NNE E+
Sbjct: 580 TDWDKITKSKPSNIIGGEDSRNGNEKENSFQCMKQSESFEHNVNLSTDNNEPNGVTEIGL 639
Query: 482 PHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
P VE + + Q ALKL TLP+SCYATMAIRELLKTSTSVAF KTLN
Sbjct: 640 PQVEPQFESGAPEAQRALKLSFTLPASCYATMAIRELLKTSTSVAFQKTLN 690
>gi|255542334|ref|XP_002512230.1| tRNA pseudouridine synthase d, putative [Ricinus communis]
gi|223548191|gb|EEF49682.1| tRNA pseudouridine synthase d, putative [Ricinus communis]
Length = 753
Score = 771 bits (1991), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/540 (71%), Positives = 441/540 (81%), Gaps = 12/540 (2%)
Query: 3 RNSKKRKERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFG 62
RNSKKRK+R D PFDSRGS++WPE LGKFLRFHLYKENKDTQEA+GLI KMLGI PRSFG
Sbjct: 215 RNSKKRKDRNDKPFDSRGSDHWPEHLGKFLRFHLYKENKDTQEAIGLIGKMLGIQPRSFG 274
Query: 63 FAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTIT 122
FAGTKDKRSVSTQRVTVFKQ AS+LAALN RLIGI++GDFCYV EGLLLGQLLGNRFT+T
Sbjct: 275 FAGTKDKRSVSTQRVTVFKQHASRLAALNDRLIGIKVGDFCYVNEGLLLGQLLGNRFTVT 334
Query: 123 LRGVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL 182
LRGVV DSED IK SA+SLGR+GFINYFGLQRFGSGSVPTHL+GA LLRGEWK AV MIL
Sbjct: 335 LRGVVADSEDTIKGSADSLGRHGFINYFGLQRFGSGSVPTHLIGAALLRGEWKYAVSMIL 394
Query: 183 DPREGE-------RNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQ 235
DPREG+ + AREYYKE+DDIDGTLR+LPR+L AERA+LQCLKKCPGNYLQ
Sbjct: 395 DPREGDILLLVICFMWMRMAREYYKESDDIDGTLRQLPRYLTAERAVLQCLKKCPGNYLQ 454
Query: 236 ALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNP 295
ALKAIPRTLRMMYVHSYQS+LWNHAAS RVQK+GT+ VVVGDLV+CKGDDTE+E+G N
Sbjct: 455 ALKAIPRTLRMMYVHSYQSYLWNHAASMRVQKYGTDQVVVGDLVYCKGDDTEREIGSANS 514
Query: 296 EFEYESSNDADDSSHLDEVPETDHPDGRHNLVKT---VTAADINSGKYTIDDVVLPLPGS 352
E + D S+LDE TD + + LVK V A D+++G YTI+DV+LP+PGS
Sbjct: 515 ACEDDDCEDMYGCSNLDETSGTDLSERKDTLVKVEQAVNAEDLSTGNYTINDVILPMPGS 574
Query: 353 RVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTY 412
RV YP ND+A+VYH LAEKD INL ES+H+ KEFSITSMTG+YRRVFQKPMDFEWE+L+Y
Sbjct: 575 RVSYPTNDIAKVYHDLAEKDAINLAESVHSAKEFSITSMTGSYRRVFQKPMDFEWEILSY 634
Query: 413 IDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNE 472
DG PLAETD++K+AKAK + + KEEE N K PSDCM+Q S D+ LS E N
Sbjct: 635 TDGTTPLAETDMEKLAKAKSIELNKEEETK-KNDTKSPSDCMRQPMSSGNDLHLSAEYNR 693
Query: 473 AACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
+EV+ VE + G +++G Q ALKL TLP+SCYATMAIRELLKTSTSVAFHKTLN
Sbjct: 694 EG-EREVEVAKVEPLYGPNTRGAQTALKLTFTLPASCYATMAIRELLKTSTSVAFHKTLN 752
>gi|145338120|ref|NP_187133.3| pseudouridine synthase [Arabidopsis thaliana]
gi|52354299|gb|AAU44470.1| hypothetical protein AT3G04820 [Arabidopsis thaliana]
gi|61742699|gb|AAX55170.1| hypothetical protein At3g04820 [Arabidopsis thaliana]
gi|332640619|gb|AEE74140.1| pseudouridine synthase [Arabidopsis thaliana]
Length = 715
Score = 742 bits (1916), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/531 (69%), Positives = 422/531 (79%), Gaps = 14/531 (2%)
Query: 2 GRNSKKRKERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSF 61
G SKKRKERGD PFDSRGSE+WPE +GKFLRFHLYKENKDTQEALGLI KMLG+ P+SF
Sbjct: 199 GNRSKKRKERGDKPFDSRGSEHWPEHVGKFLRFHLYKENKDTQEALGLIGKMLGVQPKSF 258
Query: 62 GFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTI 121
GF+GTKDKRSVSTQRVTVFKQ+ASKLAALNKRL GI++GDFC VKEGLLLGQL+GNRFTI
Sbjct: 259 GFSGTKDKRSVSTQRVTVFKQQASKLAALNKRLFGIKVGDFCNVKEGLLLGQLMGNRFTI 318
Query: 122 TLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMI 181
TLRGVV DSE+ IK SA SLG++GFINYFGLQRFGSGSVPTH VGA LL+GEWK AV MI
Sbjct: 319 TLRGVVADSEETIKQSAESLGKDGFINYFGLQRFGSGSVPTHHVGAALLKGEWKDAVDMI 378
Query: 182 LDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIP 241
LDPRE ER+ ++ AREYYKET DIDGTLR+LPR+LVAERAILQCLKKCPGNYLQALK IP
Sbjct: 379 LDPRETERHVVNDAREYYKETGDIDGTLRQLPRYLVAERAILQCLKKCPGNYLQALKGIP 438
Query: 242 RTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYES 301
RTLRMMYVHSYQS+LWN+AAS RV+ +GT VV+GDLV K D ++ + + E ES
Sbjct: 439 RTLRMMYVHSYQSYLWNNAASLRVKNYGTSQVVLGDLVSTKVDAAKRMVDSLTSEHN-ES 497
Query: 302 SNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDV 361
S +A D +D+ D P R +LVK V+ D+ +G Y+ D+VLPLPGSRVIYP ND+
Sbjct: 498 SEEALDCDQVDDTAVVDLPAERSDLVKVVSIEDLEAGTYSTSDIVLPLPGSRVIYPSNDI 557
Query: 362 AEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAE 421
AE+YH LA+KDGI+LTES+H VKEFSITSMTG YRRVFQKP+DFEWELLTY D NKPLAE
Sbjct: 558 AEIYHDLAKKDGISLTESIHGVKEFSITSMTGGYRRVFQKPIDFEWELLTYTDSNKPLAE 617
Query: 422 TDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQ 481
TDLD+I K V V E + K ++ E+ KD T++NEA K+
Sbjct: 618 TDLDRIPMNKPVEKVGSTEEIEDESMKSDTNPHDSGETNLKD---QTDSNEA--EKDTGN 672
Query: 482 PHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
P DS+ QMALK+ LTLPSSCYATMAIRELLKTSTSVA+HKTLN
Sbjct: 673 P--------DSEQTQMALKMALTLPSSCYATMAIRELLKTSTSVAYHKTLN 715
>gi|356571176|ref|XP_003553755.1| PREDICTED: multisubstrate pseudouridine synthase 7-like [Glycine
max]
Length = 687
Score = 741 bits (1912), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/531 (68%), Positives = 436/531 (82%), Gaps = 6/531 (1%)
Query: 2 GRNSKKRKERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSF 61
G+NSKKRKER D PFDSRGSENWPE +GKFLRFHLYKENKDT EALG+I ML I P+SF
Sbjct: 162 GKNSKKRKERDDKPFDSRGSENWPENVGKFLRFHLYKENKDTHEALGVIGNMLSIQPKSF 221
Query: 62 GFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTI 121
GFAGTKDKR+V+TQRVTV+KQ+AS+LA+LNKRL GI+LGDFCYVKEGL LGQLLGNRFTI
Sbjct: 222 GFAGTKDKRAVTTQRVTVYKQQASRLASLNKRLFGIKLGDFCYVKEGLCLGQLLGNRFTI 281
Query: 122 TLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMI 181
TLRG+V DSED+IKASA++LGR+GFINYFGLQRFGSGS+PTHL+GA LLRGEWK AV MI
Sbjct: 282 TLRGIVADSEDIIKASADALGRHGFINYFGLQRFGSGSLPTHLIGAALLRGEWKLAVDMI 341
Query: 182 LDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIP 241
LDPR+GE++ I+KAR+YYKE+ D+ GTL++LPR+LVAERA+LQ LK PGNYLQALK+IP
Sbjct: 342 LDPRDGEKSAIAKARKYYKESSDVVGTLKQLPRYLVAERAVLQTLKTSPGNYLQALKSIP 401
Query: 242 RTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYES 301
RTLRM+YVHSYQS+LWNHAAS RVQK+GTE+VV+GDLV+CK + T K V E+ E
Sbjct: 402 RTLRMLYVHSYQSYLWNHAASKRVQKYGTENVVLGDLVYCKENSTGKVTEFVGSEYA-ED 460
Query: 302 SNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDV 361
DS++ DEV H + N VK + A D+NSG YTIDDV+LP+PGSRV YP N +
Sbjct: 461 CRGRYDSNNEDEVSGEIHEE--INSVKVIDAEDLNSGCYTIDDVILPMPGSRVKYPTNHI 518
Query: 362 AEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAE 421
A VY LA+KDGI+LTES+HNV++FSITS+TG YRRVFQKP++FEWELL+Y D ++ L +
Sbjct: 519 ANVYEDLAKKDGISLTESVHNVEDFSITSITGCYRRVFQKPINFEWELLSYSDSSEQLVD 578
Query: 422 TDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQ 481
TDLDKI K+K +N VK+ A G K ++ DC+++ ES S DI EN +EVK
Sbjct: 579 TDLDKINKSKPMNTVKQMGAANG-KNEEAFDCIRELES-SDDIA-KVENYSEILGEEVKL 635
Query: 482 PHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
PH ES+ G+ SQ Q+ALKL TLP+SCYATMAIRELLKTSTSVA+HKTLN
Sbjct: 636 PHDESLIGSSSQDSQIALKLSFTLPASCYATMAIRELLKTSTSVAYHKTLN 686
>gi|449449641|ref|XP_004142573.1| PREDICTED: putative pseudouridine synthase C1A4.09-like [Cucumis
sativus]
Length = 719
Score = 735 bits (1897), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/533 (70%), Positives = 433/533 (81%), Gaps = 15/533 (2%)
Query: 2 GRNSKKRKERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSF 61
GR SKKRKERGD PFDSRGS+NWPE +GKFLRFHLYKENKDTQEALGLI KMLGI RSF
Sbjct: 200 GRFSKKRKERGDKPFDSRGSDNWPEHVGKFLRFHLYKENKDTQEALGLIGKMLGIQTRSF 259
Query: 62 GFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTI 121
GFAGTKDKRS+STQRVTVFKQ AS++AALN RLIGI+LG+F Y++EGLLLGQLLGNRFTI
Sbjct: 260 GFAGTKDKRSISTQRVTVFKQHASRIAALNDRLIGIKLGNFSYIQEGLLLGQLLGNRFTI 319
Query: 122 TLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMI 181
TLRGVV +SEDVIKASA +LGR+GFINYFGLQRFGSGSVPTHLVGA+LLRGEWK AV MI
Sbjct: 320 TLRGVVANSEDVIKASAEALGRHGFINYFGLQRFGSGSVPTHLVGASLLRGEWKGAVNMI 379
Query: 182 LDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIP 241
LDPREG+ + +AR+YYKE+DDIDGTL++LPR+LVAERAILQCLKKCPGNYLQALKAIP
Sbjct: 380 LDPREGDILLLMRARDYYKESDDIDGTLKQLPRYLVAERAILQCLKKCPGNYLQALKAIP 439
Query: 242 RTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYES 301
RTLRMMYVHSYQS+LWNHAAS RVQK+G + VVVGDLV+CK + TE + E+E E
Sbjct: 440 RTLRMMYVHSYQSYLWNHAASMRVQKYGIDKVVVGDLVYCKENHTETAAVQNSEEYEDED 499
Query: 302 SNDAD--DSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMN 359
DA+ DS HL+EV + P RH LVK VTA D+ SG +TIDDVVLPLPGSRV+YP N
Sbjct: 500 CGDANSYDSCHLEEVCKLGLPTERHKLVKAVTAGDVLSGNFTIDDVVLPLPGSRVLYPTN 559
Query: 360 DVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPL 419
D+AEVY+ LA KD I+LT S+HNVKEFSITSMTG+YRRVFQ+P D+EWEL++Y+D N PL
Sbjct: 560 DIAEVYNDLATKDSISLTNSVHNVKEFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPL 619
Query: 420 AETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEV 479
A++DL + K++ V I KEE+ +K +D D QS K+I+L A KE
Sbjct: 620 AQSDLHNLLKSQSVEISKEEKIADKSKNEDSLDSTDQSVCCKKNIQLE------AGGKEN 673
Query: 480 KQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
+ G +Q QMALKL TLP+S YATMAIRELLKTSTSVAFHKTLN
Sbjct: 674 EN-------GQGTQDPQMALKLSFTLPASSYATMAIRELLKTSTSVAFHKTLN 719
>gi|356504097|ref|XP_003520835.1| PREDICTED: multisubstrate pseudouridine synthase 7-like [Glycine
max]
Length = 687
Score = 731 bits (1886), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/531 (67%), Positives = 437/531 (82%), Gaps = 6/531 (1%)
Query: 2 GRNSKKRKERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSF 61
G+NSKKRKERGD PFDSRGSENWP+ +GKFLRFHLYKENKDT EALG+I ML + P+SF
Sbjct: 162 GKNSKKRKERGDKPFDSRGSENWPKNVGKFLRFHLYKENKDTHEALGVIGNMLSVQPKSF 221
Query: 62 GFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTI 121
GFAGTKDKR+V+TQRVTV+KQRAS+LA+LNKRL GI+LGDFCYVKEGL LGQLLGNRFTI
Sbjct: 222 GFAGTKDKRAVTTQRVTVYKQRASRLASLNKRLFGIKLGDFCYVKEGLCLGQLLGNRFTI 281
Query: 122 TLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMI 181
TLRG+V DSED+IKASA++LGR+GFINYFGLQRFGSGS+PTHL+GA LL+GEWK AV MI
Sbjct: 282 TLRGIVADSEDIIKASADALGRHGFINYFGLQRFGSGSLPTHLIGAALLQGEWKLAVDMI 341
Query: 182 LDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIP 241
LDPR+GE++ I+KAR+YYKE+ D+ GTL++LPR+LVAERA+LQ LK PGNYLQALK+IP
Sbjct: 342 LDPRDGEKSAIAKARKYYKESSDVVGTLKQLPRYLVAERAVLQTLKTSPGNYLQALKSIP 401
Query: 242 RTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYES 301
RTLRM+YVHSYQS+LWNHAAS RVQK+GTE+VV+GDLV+CK + T K V E+ +
Sbjct: 402 RTLRMLYVHSYQSYLWNHAASKRVQKYGTENVVLGDLVYCKENSTGKVTESVGSEYAEDC 461
Query: 302 SNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDV 361
S DS++ DE+ H + + VK V D+NSG YTIDDV+LP+PGSR+ YP N +
Sbjct: 462 SGRY-DSNNEDEISGEIHEE--IDSVKVVDVEDLNSGYYTIDDVILPMPGSRIKYPTNHI 518
Query: 362 AEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAE 421
A VY LA+KDGI+LTES+HNV++FSITS+TG YRRVFQKP++FEWELLTY D NK L E
Sbjct: 519 ANVYEDLAKKDGISLTESVHNVEDFSITSITGCYRRVFQKPINFEWELLTYSDSNKQLVE 578
Query: 422 TDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQ 481
TDLDK+ K+K + VK+ A G K ++ DC+++ ES + +K+ EN +E+K
Sbjct: 579 TDLDKVNKSKPMGTVKQMGAANG-KNEEAFDCIRELESSNDVVKV--ENYSEIAGEEIKL 635
Query: 482 PHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
PH ES+ G+ SQ Q+ALKL TLP+SCYATMAIRELLKTSTSVA+HKTLN
Sbjct: 636 PHDESLSGSSSQDSQIALKLSFTLPASCYATMAIRELLKTSTSVAYHKTLN 686
>gi|297833180|ref|XP_002884472.1| pseudouridylate synthase [Arabidopsis lyrata subsp. lyrata]
gi|297330312|gb|EFH60731.1| pseudouridylate synthase [Arabidopsis lyrata subsp. lyrata]
Length = 710
Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/531 (67%), Positives = 412/531 (77%), Gaps = 20/531 (3%)
Query: 2 GRNSKKRKERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSF 61
G SKKRKERGD PFDSRGSE+WPE +GKFLRFHLYKENKDTQEALGLI KMLG+ P+SF
Sbjct: 200 GNRSKKRKERGDKPFDSRGSEHWPEHVGKFLRFHLYKENKDTQEALGLIGKMLGVQPKSF 259
Query: 62 GFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTI 121
GF+GTKDKRSVSTQRVTVFKQ+ASKLAALNKRL GI++GDFC+VKEGLLLGQL+GNRFTI
Sbjct: 260 GFSGTKDKRSVSTQRVTVFKQQASKLAALNKRLFGIKVGDFCHVKEGLLLGQLMGNRFTI 319
Query: 122 TLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMI 181
TLRGVV DSE+ IK SA SLG++GFINYFGLQRFGSGSVPTH VGA LL+GEWK A
Sbjct: 320 TLRGVVADSEETIKKSAESLGKDGFINYFGLQRFGSGSVPTHHVGAALLKGEWKDA---- 375
Query: 182 LDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIP 241
+ ++ AREYYKET DIDGTLR+LPR+LVAERAILQCLKKCPGNYLQALK IP
Sbjct: 376 --ECSNAWHVVNDAREYYKETGDIDGTLRQLPRYLVAERAILQCLKKCPGNYLQALKGIP 433
Query: 242 RTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYES 301
RTLRMMYVHSYQS+LWN+AAS RV K+GT VV+GDLV K D ++ + + E ES
Sbjct: 434 RTLRMMYVHSYQSYLWNNAASLRVTKYGTSQVVLGDLVSTKVDAEKRMVDSLTSEHN-ES 492
Query: 302 SNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDV 361
S +A D +D+ D P R +LVK V+ D+ +G Y D+VLPLPGSRVIYP ND+
Sbjct: 493 SEEALDCDQVDDTAVVDLPAERSDLVKVVSIEDLEAGTYLTSDIVLPLPGSRVIYPSNDI 552
Query: 362 AEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAE 421
AE+YH LA+KDGI+LTES+H VKEFSITSMTG YRRVFQKP+DFEWELLTY D NKPLAE
Sbjct: 553 AEIYHDLAKKDGISLTESIHGVKEFSITSMTGGYRRVFQKPIDFEWELLTYTDSNKPLAE 612
Query: 422 TDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQ 481
TDLD+I K V+ V E + K ++ + E+ KD S E+ K+ +
Sbjct: 613 TDLDRITVYKPVDKVGSAEEIEDEPLKSDTNPHESCETNLKDQTDSKEDE-----KDTRN 667
Query: 482 PHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
P DS+ QMALK+ LTLPSSCYATMAIRELLKTSTSVA+HKTLN
Sbjct: 668 P--------DSEQTQMALKMALTLPSSCYATMAIRELLKTSTSVAYHKTLN 710
>gi|357512259|ref|XP_003626418.1| Pseudouridylate synthase-like protein [Medicago truncatula]
gi|355501433|gb|AES82636.1| Pseudouridylate synthase-like protein [Medicago truncatula]
Length = 669
Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/531 (64%), Positives = 407/531 (76%), Gaps = 34/531 (6%)
Query: 2 GRNSKKRKERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSF 61
G+NS+KRKER PFDSRGSENWPE GKFLRFHLYKENKDTQEALG++ MLG+ +SF
Sbjct: 172 GKNSRKRKERDTKPFDSRGSENWPENAGKFLRFHLYKENKDTQEALGVLGHMLGVKSKSF 231
Query: 62 GFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTI 121
GFAGTKDKR+V+TQRVTV+K++ASKLA+LN++L GI++GDFCYV EGL LGQL GNRFTI
Sbjct: 232 GFAGTKDKRAVTTQRVTVYKKQASKLASLNEKLFGIKVGDFCYVNEGLCLGQLFGNRFTI 291
Query: 122 TLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMI 181
TLRGVV DS D IKA+A+SLGR+GFINYFGLQRFGSGSVPTH +GA LLRGEWK
Sbjct: 292 TLRGVVADSVDTIKAAADSLGRHGFINYFGLQRFGSGSVPTHRIGAALLRGEWKC----- 346
Query: 182 LDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIP 241
AR+YYK+T+D+ GTL++LP+ LVAE A+L+ LK+ PGNYLQALK+IP
Sbjct: 347 -------------ARKYYKDTNDVAGTLKQLPQFLVAETAVLKSLKQNPGNYLQALKSIP 393
Query: 242 RTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYES 301
RTLRMMYVHSYQS+LWN+AAS RV+K+GTE VV+GDLV+CK + +EK G V PE + +
Sbjct: 394 RTLRMMYVHSYQSYLWNNAASTRVKKYGTEQVVLGDLVYCKENPSEKVTGIVGPECD-DD 452
Query: 302 SNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDV 361
D+ D+++ DEV H D R++ VK VT D+NS Y IDDV+LP+PGSR IYP ND+
Sbjct: 453 RGDSYDTNNEDEVSGDIH-DKRNSYVKAVTTEDLNSKCYAIDDVILPMPGSRSIYPTNDI 511
Query: 362 AEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAE 421
EVY+ L KDGI+LT+S+HN KEFSITS+TG+YRRVFQKP+DFEWELLTY D NKPL E
Sbjct: 512 VEVYNDLTSKDGISLTDSVHNAKEFSITSVTGSYRRVFQKPIDFEWELLTYTDSNKPLVE 571
Query: 422 TDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQ 481
TDLDKI K+K + IV A+ KEK DC+ Q ES S D KEV
Sbjct: 572 TDLDKIGKSKPI-IVNTVCALNEQKEK-VFDCISQLES-SDD-----------APKEVIL 617
Query: 482 PHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
PH ESV + SQ ALKL TLPSS YATMAIRELLKTSTSVA+ KTLN
Sbjct: 618 PHDESVHDSSSQDSHTALKLTFTLPSSSYATMAIRELLKTSTSVAYQKTLN 668
>gi|357133066|ref|XP_003568149.1| PREDICTED: pseudouridylate synthase 7 homolog [Brachypodium
distachyon]
Length = 693
Score = 638 bits (1645), Expect = e-180, Method: Compositional matrix adjust.
Identities = 315/522 (60%), Positives = 385/522 (73%), Gaps = 16/522 (3%)
Query: 11 RGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKR 70
R D PFD RGS NWP +GKFLRFHL KENKDTQ+ALG+I KMLG+ PR+FGF+GTKDKR
Sbjct: 187 RDDTPFDRRGSTNWPPHIGKFLRFHLCKENKDTQDALGVIGKMLGLQPRAFGFSGTKDKR 246
Query: 71 SVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDS 130
+V+TQ+VTVFK A+KLAALNKRL GI++G+FCYVKEGL LGQL+GNRFTITLRGVV +S
Sbjct: 247 AVTTQQVTVFKVPANKLAALNKRLFGIKVGNFCYVKEGLGLGQLMGNRFTITLRGVVAES 306
Query: 131 EDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERN 190
E VIKA+ +SLG+NGFINY+GLQRFGS SVPTHLVG+ LLRGEWK+AVK+ILDPREGER+
Sbjct: 307 EGVIKAAVDSLGKNGFINYYGLQRFGSSSVPTHLVGSALLRGEWKTAVKLILDPREGERD 366
Query: 191 EISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVH 250
+I K RE+YKE DID LR PRHLVAE+AILQCL+KCP NYLQALK IPRTLRMMYVH
Sbjct: 367 DIKKVREHYKEHGDIDMALRNFPRHLVAEKAILQCLRKCPENYLQALKGIPRTLRMMYVH 426
Query: 251 SYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSH 310
SYQS+LWNHAAS RVQK+G V+ GDL++ K E G E+ +D +SS
Sbjct: 427 SYQSYLWNHAASMRVQKYGISQVIEGDLIYSK----ESHPGEATSVGTSETDDDHANSSE 482
Query: 311 LDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAE 370
+D ET P+ VK V + D+ G Y+ +DVVLPLPGS+ ++P N+VAE+YH +A+
Sbjct: 483 IDICSET-LPEENIQSVKIVDSEDLLKGIYSFEDVVLPLPGSQALFPGNEVAEIYHEMAK 541
Query: 371 KDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKA 430
KDGI+LT S H VKEFSIT+M G+YRRVFQ+P+DFEWEL+ Y D + LAETD+D ++K
Sbjct: 542 KDGISLTGSAHGVKEFSITNMKGSYRRVFQRPIDFEWELMKYTDESASLAETDMDILSKV 601
Query: 431 KLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGA 490
KL E G P+DC KL + + + E +S +
Sbjct: 602 KLTEAKANEPGSSGVSNSKPADC-----------KLESPSENSMPTSETSLGENKSNGSS 650
Query: 491 DSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
D ++A+KL TLP+S YATMAIRELLK TSVA+ KTL+
Sbjct: 651 DISPSKLAVKLAFTLPASTYATMAIRELLKNPTSVAYQKTLD 692
>gi|226508266|ref|NP_001146470.1| uncharacterized protein LOC100280058 [Zea mays]
gi|219887425|gb|ACL54087.1| unknown [Zea mays]
gi|413949796|gb|AFW82445.1| hypothetical protein ZEAMMB73_396305 [Zea mays]
Length = 682
Score = 635 bits (1638), Expect = e-179, Method: Compositional matrix adjust.
Identities = 321/528 (60%), Positives = 389/528 (73%), Gaps = 36/528 (6%)
Query: 11 RGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKR 70
R PFDSRGS NWP+ +GKFLRFHLYKENKDTQEALG+I KMLG+ PRSFGFAGTKDKR
Sbjct: 184 RDGRPFDSRGSSNWPDNVGKFLRFHLYKENKDTQEALGVIGKMLGLQPRSFGFAGTKDKR 243
Query: 71 SVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDS 130
+V+TQ+VTVFK +ASKL ALNKRL GI++G+FCYVKEGL+LGQL GNRFTITLRGV +S
Sbjct: 244 AVTTQQVTVFKVQASKLLALNKRLFGIKVGNFCYVKEGLVLGQLTGNRFTITLRGVTAES 303
Query: 131 EDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERN 190
ED+IK + + LG+NGFINY+GLQRFGSGS+PTHLVGA LLRGEWK AV +ILDPREGER+
Sbjct: 304 EDMIKIAVDGLGKNGFINYYGLQRFGSGSIPTHLVGAALLRGEWKVAVNLILDPREGERD 363
Query: 191 EISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVH 250
+I++ R+ YKE DID LR PRHLVAERAILQCLKKCPGN+LQALK IPRTLRMMYVH
Sbjct: 364 DINEVRKRYKEHGDIDMALRNFPRHLVAERAILQCLKKCPGNHLQALKGIPRTLRMMYVH 423
Query: 251 SYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSH 310
SYQS+LWNHAAS RV+K+G VV GDLV+ K +E E V+ E+ +D +S
Sbjct: 424 SYQSYLWNHAASMRVEKYGISQVVEGDLVYNKECPSE-ESTSVDI---LETDDDHTNSIE 479
Query: 311 LDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAE 370
+D E P+ K V + D G YT DDVVLPLPGS+ ++P N++AE+YH +A
Sbjct: 480 IDLCSEA-QPEESIQSAKIVDSGDFTKGIYTFDDVVLPLPGSQALFPGNEIAEIYHEMAR 538
Query: 371 KDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKA 430
KDGI+LTE+ H VKEFSITSM G YRRVFQ+P+ FEWEL+TY D LAETDLD +++
Sbjct: 539 KDGISLTENAHGVKEFSITSMKGGYRRVFQRPIGFEWELITYTDDTSSLAETDLDVLSR- 597
Query: 431 KLVNIVKEEEAVCGNKEKDPSDCMKQSESLSK-----DIKLSTENNEAACAKEVKQPHVE 485
K K+ ++ + + ES K D + T N + E
Sbjct: 598 --------------TKPKEANELISKQESQDKLEKAPDTSVPTNGNSSQ----------E 633
Query: 486 SVCGA-DSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
+ G+ D + K++ALKL TLP+SCYATMAIRELLKTSTSVA+ KTL+
Sbjct: 634 KLIGSPDIRPKKLALKLAFTLPTSCYATMAIRELLKTSTSVAYQKTLS 681
>gi|413949788|gb|AFW82437.1| hypothetical protein ZEAMMB73_597944 [Zea mays]
Length = 653
Score = 635 bits (1637), Expect = e-179, Method: Compositional matrix adjust.
Identities = 321/528 (60%), Positives = 389/528 (73%), Gaps = 36/528 (6%)
Query: 11 RGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKR 70
R PFDSRGS NWP+ +GKFLRFHLYKENKDTQEALG+I KMLG+ PRSFGFAGTKDKR
Sbjct: 155 RDGRPFDSRGSSNWPDNVGKFLRFHLYKENKDTQEALGVIGKMLGLQPRSFGFAGTKDKR 214
Query: 71 SVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDS 130
+V+TQ+VTVFK +ASKL ALNKRL GI++G+FCYVKEGL+LGQL GNRFTITLRGV +S
Sbjct: 215 AVTTQQVTVFKVQASKLLALNKRLFGIKVGNFCYVKEGLVLGQLTGNRFTITLRGVTAES 274
Query: 131 EDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERN 190
ED+IK + + LG+NGFINY+GLQRFGSGS+PTHLVGA LLRGEWK AV +ILDPREGER+
Sbjct: 275 EDMIKIAVDGLGKNGFINYYGLQRFGSGSIPTHLVGAALLRGEWKVAVNLILDPREGERD 334
Query: 191 EISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVH 250
+I++ R+ YKE DID LR PRHLVAERAILQCLKKCPGN+LQALK IPRTLRMMYVH
Sbjct: 335 DINEVRKRYKEHGDIDMALRNFPRHLVAERAILQCLKKCPGNHLQALKGIPRTLRMMYVH 394
Query: 251 SYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSH 310
SYQS+LWNHAAS RV+K+G VV GDLV+ K +E E V+ E+ +D +S
Sbjct: 395 SYQSYLWNHAASMRVEKYGISQVVEGDLVYNKECPSE-ESTSVDI---LETDDDHTNSIE 450
Query: 311 LDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAE 370
+D E P+ K V + D G YT DDVVLPLPGS+ ++P N++AE+YH +A
Sbjct: 451 IDLCSEA-QPEESIQSAKIVDSGDFTKGIYTFDDVVLPLPGSQALFPGNEIAEIYHEMAR 509
Query: 371 KDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKA 430
KDGI+LTE+ H VKEFSITSM G YRRVFQ+P+ FEWEL+TY D LAETDLD +++
Sbjct: 510 KDGISLTENAHGVKEFSITSMKGGYRRVFQRPIGFEWELITYTDDTSSLAETDLDVLSR- 568
Query: 431 KLVNIVKEEEAVCGNKEKDPSDCMKQSESLSK-----DIKLSTENNEAACAKEVKQPHVE 485
K K+ ++ + + ES K D + T N + E
Sbjct: 569 --------------TKPKEANELISKQESQDKLEKAPDTSVPTNGNSSQ----------E 604
Query: 486 SVCGA-DSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
+ G+ D + K++ALKL TLP+SCYATMAIRELLKTSTSVA+ KTL+
Sbjct: 605 KLIGSPDIRPKKLALKLAFTLPTSCYATMAIRELLKTSTSVAYQKTLS 652
>gi|326490800|dbj|BAJ90067.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 700
Score = 634 bits (1635), Expect = e-179, Method: Compositional matrix adjust.
Identities = 311/521 (59%), Positives = 391/521 (75%), Gaps = 18/521 (3%)
Query: 13 DNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSV 72
D PFDSRGS +WP GKFLRFHL KENKDTQ+ALG+I KMLG+ RSFGF+GTKDKR+V
Sbjct: 196 DRPFDSRGSSSWPAHAGKFLRFHLCKENKDTQDALGVIGKMLGLQSRSFGFSGTKDKRAV 255
Query: 73 STQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSED 132
+TQ+VTVFK A+K+AALNKRL GI++G+FCYVKEGL LGQL+GNRFTITLRGVV +SED
Sbjct: 256 TTQQVTVFKVPANKIAALNKRLYGIKVGNFCYVKEGLGLGQLMGNRFTITLRGVVAESED 315
Query: 133 VIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEI 192
+IKA+ + LG+NGFINY+GLQRFGSGSVPTHL+GA LLRGEWKSAV ++LDPREGER++I
Sbjct: 316 MIKAAVDGLGKNGFINYYGLQRFGSGSVPTHLIGAALLRGEWKSAVHLVLDPREGERDDI 375
Query: 193 SKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSY 252
+ RE+YK+ DID LR PRHLVAE+AILQCL+KCPGNYLQALK IPR LRMMYVH+Y
Sbjct: 376 KEVREHYKQHGDIDMALRNFPRHLVAEKAILQCLRKCPGNYLQALKGIPRPLRMMYVHAY 435
Query: 253 QSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLD 312
QS+LWNHAAS RV+K+G V+ GDLV+ K + E + +N ++ L+
Sbjct: 436 QSYLWNHAASMRVEKYGISQVIEGDLVYTKESHPGEATSVGTSEVD-SLTNASEIDICLE 494
Query: 313 EVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKD 372
+PE + VK V + D+ G Y+ +DVVLPLPGS+ ++P N+VA++YH +A+KD
Sbjct: 495 ALPEENIQS-----VKLVDSEDLTKGIYSFEDVVLPLPGSQALFPGNEVAQIYHEMAKKD 549
Query: 373 GINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKL 432
GI+LTE+ H VKEFSITSM G YRRVFQKP+DFEWEL+TY D + LAETDLD ++K KL
Sbjct: 550 GISLTENAHGVKEFSITSMKGGYRRVFQKPIDFEWELMTYTDDSASLAETDLDILSKGKL 609
Query: 433 VNI-VKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGAD 491
V E A GN +P DC L + ++ S +E + + +S+ +D
Sbjct: 610 TEAKVANEPAPSGNSASNPPDC-----KLEEPLETSMPTSETSLVEN------KSIGSSD 658
Query: 492 SQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
+ ++A+KL TLP+S YATMAIRELLK STSVA+ KTL+
Sbjct: 659 TLPSKLAVKLAFTLPASSYATMAIRELLKDSTSVAYQKTLD 699
>gi|12322858|gb|AAG51420.1|AC009465_20 unknown protein; 78996-83414 [Arabidopsis thaliana]
Length = 699
Score = 626 bits (1615), Expect = e-177, Method: Compositional matrix adjust.
Identities = 326/525 (62%), Positives = 380/525 (72%), Gaps = 46/525 (8%)
Query: 2 GRNSKKRKERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSF 61
G SKKRKERGD PFDSRGSE+WPE +GKFLRFHLYKENKDTQEALGLI KMLG+ P+SF
Sbjct: 199 GNRSKKRKERGDKPFDSRGSEHWPEHVGKFLRFHLYKENKDTQEALGLIGKMLGVQPKSF 258
Query: 62 GFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTI 121
GF+GTKDKRSVSTQRVTVFKQ+ASKLAALNKRL GI++GDFC VKEGLLLGQL+GNRFTI
Sbjct: 259 GFSGTKDKRSVSTQRVTVFKQQASKLAALNKRLFGIKVGDFCNVKEGLLLGQLMGNRFTI 318
Query: 122 TLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMI 181
TLRGVV DSE+ IK SA SLG++GFINYFGLQ + S T + W
Sbjct: 319 TLRGVVADSEETIKQSAESLGKDGFINYFGLQFLVANSTYTFAL--------W------- 363
Query: 182 LDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIP 241
+ ++ AREYYKET DIDGTLR+LPR+LVAERAILQCLKKCPGNYLQALK IP
Sbjct: 364 --------HVVNDAREYYKETGDIDGTLRQLPRYLVAERAILQCLKKCPGNYLQALKGIP 415
Query: 242 RTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYES 301
RTLRMMYVHSYQS+LWN+AAS RV+ +GT VV+GDLV K D ++ + + E ES
Sbjct: 416 RTLRMMYVHSYQSYLWNNAASLRVKNYGTSQVVLGDLVSTKVDAAKRMVDSLTSEHN-ES 474
Query: 302 SNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDV 361
S +A D +D+ D P R +LVK V+ D+ +G Y+ D+VLPLPGSRVIYP ND+
Sbjct: 475 SEEALDCDQVDDTAVVDLPAERSDLVKVVSIEDLEAGTYSTSDIVLPLPGSRVIYPSNDI 534
Query: 362 AEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAE 421
AE+YH LA+K + +EFSITSMTG YRRVFQKP+DFEWELLTY D NKPLAE
Sbjct: 535 AEIYHDLAKK---------YCFREFSITSMTGGYRRVFQKPIDFEWELLTYTDSNKPLAE 585
Query: 422 TDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQ 481
TDLD+I K V V E + K ++ E+ KD T++NEA K+
Sbjct: 586 TDLDRIPMNKPVEKVGSTEEIEDESMKSDTNPHDSGETNLKD---QTDSNEA--EKDTGN 640
Query: 482 PHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVA 526
P DS+ QMALK+ LTLPSSCYATMAIRELLKTSTSV+
Sbjct: 641 P--------DSEQTQMALKMALTLPSSCYATMAIRELLKTSTSVS 677
>gi|326491321|dbj|BAK05760.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 706
Score = 558 bits (1438), Expect = e-156, Method: Compositional matrix adjust.
Identities = 294/526 (55%), Positives = 362/526 (68%), Gaps = 39/526 (7%)
Query: 11 RGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKR 70
R D PFDSRGS WP LGKFLRFHLYKENKDTQEAL +I KMLG+ PRSF AGTKDKR
Sbjct: 215 RDDMPFDSRGSITWPYHLGKFLRFHLYKENKDTQEALRVIGKMLGLQPRSFRIAGTKDKR 274
Query: 71 SVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDS 130
+++TQ+VT+FK AS+LAALN +L GI++GDF YVKEGL+LGQL+GNRFTITLR V+ +S
Sbjct: 275 AITTQQVTLFKVHASRLAALNNKLTGIKVGDFNYVKEGLVLGQLMGNRFTITLRSVIAES 334
Query: 131 EDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERN 190
EDVIKA+ + L ++GFINY+GLQRFGS SVPTHLVGA LLRGEW+SAV +ILDPREGE +
Sbjct: 335 EDVIKAAVDGLIKSGFINYYGLQRFGSASVPTHLVGAALLRGEWRSAVSLILDPREGEYD 394
Query: 191 EISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVH 250
+++ RE+YKE DID +R PR L+AERAILQ LKK PGNYLQAL AIPRTLR+MYVH
Sbjct: 395 DMNGVREHYKEHGDIDVAIRNFPRRLIAERAILQRLKKYPGNYLQALMAIPRTLRLMYVH 454
Query: 251 SYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADD--- 307
SYQS+LWNHAAS R +G V+ GDLV+ K C+ ++S + DD
Sbjct: 455 SYQSYLWNHAASMRAGIYGLSGVIEGDLVYKK--------ECLGEGTLTDTSKNNDDHTI 506
Query: 308 SSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHH 367
+S +D ET P+ VK + D+ YT++DVVLPLPGS ++P N+VA +YH
Sbjct: 507 ASEMDIFVET-LPEETIQSVKIADSEDLLKAVYTLEDVVLPLPGSETLFPGNEVAGIYHE 565
Query: 368 LAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKI 427
+A KDGI+LT+S+H VKEFSITSM G YRRV Q+P+D +W+++TY D L ETDLD +
Sbjct: 566 IANKDGISLTKSIHGVKEFSITSMKGGYRRVLQRPIDCKWDVVTYTDDKIHLVETDLDVL 625
Query: 428 AKAKLVNIVKEEEAVCGNKEKDPSDCMK-QSESLSKDIKLSTENNEAACAKEVKQPHVES 486
+KAK PS+ + S S D L T E
Sbjct: 626 SKAK------------------PSEVNELLSTRASHDGSLDTSGATILAETE-------- 659
Query: 487 VCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
G+ ++A+KL TLP+S YATMAIREL KTSTSV K LN
Sbjct: 660 STGSSDLLPELAVKLSFTLPTSSYATMAIRELTKTSTSVDCQKALN 705
>gi|357131068|ref|XP_003567165.1| PREDICTED: pseudouridylate synthase 7 homolog [Brachypodium
distachyon]
Length = 711
Score = 556 bits (1434), Expect = e-156, Method: Compositional matrix adjust.
Identities = 286/517 (55%), Positives = 363/517 (70%), Gaps = 31/517 (5%)
Query: 11 RGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKR 70
R D PFDSR S WP LGKFLRFHLYKENKDTQEAL +I KMLG+ P+SFGFAGTKDKR
Sbjct: 216 RDDRPFDSRSSIAWPYHLGKFLRFHLYKENKDTQEALRVIGKMLGLQPKSFGFAGTKDKR 275
Query: 71 SVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDS 130
+++TQ+VT+ K AS+LA LN +LIGI++GDF YVKE L+LGQL+GNRFTITLR VV +S
Sbjct: 276 AITTQQVTLLKVHASRLADLNSKLIGIKVGDFDYVKERLVLGQLMGNRFTITLRSVVAES 335
Query: 131 EDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERN 190
ED+IKA+ + L + GFINY+GLQRFGS SVP HL+GA LLRGEW+SAV +ILDP+EGE +
Sbjct: 336 EDLIKAAIDGLIKGGFINYYGLQRFGSASVPNHLIGAALLRGEWESAVNLILDPKEGECD 395
Query: 191 EISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVH 250
+++ RE+Y+E DID +R PR L+AERAILQ LKK PGNYLQAL AIPRTLR+MYVH
Sbjct: 396 DMNGVREHYEEHGDIDVAIRNFPRRLIAERAILQRLKKYPGNYLQALMAIPRTLRLMYVH 455
Query: 251 SYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSH 310
SYQS+LWNHAAS RV K+GT VV GDLV+ K + G V ++S DAD ++
Sbjct: 456 SYQSYLWNHAASMRVGKYGTTQVVEGDLVYRK--ECHFGEGTVT-----DTSEDADGRTN 508
Query: 311 LDEVPETDH--PDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHL 368
L E+ + P+ VK + D+ Y +DVVLPLPGS ++P N+VA +YH +
Sbjct: 509 LSEMDISCETVPEETIQSVKITDSEDLLKAIYKFEDVVLPLPGSETLFPGNEVAGIYHEI 568
Query: 369 AEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIA 428
+KDGI+LTES+H VKEFSITSM G YRRV Q+P+D EW+L+TY D PL ETDLD ++
Sbjct: 569 TKKDGISLTESIHGVKEFSITSMKGGYRRVIQRPIDLEWDLVTYTDDKTPLVETDLDVLS 628
Query: 429 KAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDI-KLSTENNEAACAKEVKQPHVESV 487
KA + +K +E LS + +++ + + +S+
Sbjct: 629 KA---------------------ESLKANEPLSTGVFSCTSQEDSLHTSGATSLVETKSI 667
Query: 488 CGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTS 524
+D +A+KL TLP+S YATMAIREL+KTSTS
Sbjct: 668 GSSDLLPDLLAVKLDFTLPASSYATMAIRELMKTSTS 704
>gi|242050986|ref|XP_002463237.1| hypothetical protein SORBIDRAFT_02g040320 [Sorghum bicolor]
gi|241926614|gb|EER99758.1| hypothetical protein SORBIDRAFT_02g040320 [Sorghum bicolor]
Length = 705
Score = 556 bits (1434), Expect = e-156, Method: Compositional matrix adjust.
Identities = 288/522 (55%), Positives = 356/522 (68%), Gaps = 29/522 (5%)
Query: 11 RGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKR 70
R D PFDSRGS +WP LGKFLRF+LYKENKDTQEALG+I KMLG+ PRSFGFAGTKDKR
Sbjct: 212 RDDKPFDSRGSTSWPYHLGKFLRFNLYKENKDTQEALGVIGKMLGVQPRSFGFAGTKDKR 271
Query: 71 SVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDS 130
+V+TQ+VT+FK AS+LAALN +L GIR+GDF YVKEGL LGQL GNRF ITLR V+ +S
Sbjct: 272 AVTTQQVTLFKVHASRLAALNSKLAGIRVGDFSYVKEGLTLGQLRGNRFAITLRNVIAES 331
Query: 131 EDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERN 190
+DVI A+ N L +NGFINY+GLQRFGSGSVPTH VGA LLRGEW+ AV +IL
Sbjct: 332 DDVINAAVNGLSKNGFINYYGLQRFGSGSVPTHFVGAALLRGEWRHAVSLILG------- 384
Query: 191 EISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVH 250
R +YK D+D LR +PRHL ERAILQ LKK PGNYLQAL AIP+TLR+MYVH
Sbjct: 385 ----TRVHYKWHGDVDAALRGMPRHLTVERAILQRLKKYPGNYLQALMAIPKTLRLMYVH 440
Query: 251 SYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSH 310
SYQS+LWNHAAS RV+K+G VV GDLV+ G LG ++ + +SS
Sbjct: 441 SYQSYLWNHAASMRVEKYGISQVVEGDLVYKTG----SSLGEATTTDTFDDDDSHVNSSE 496
Query: 311 LDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAE 370
++ ET P+ + VK V + D+ Y+ +DVVLPLPGS ++P N+VA +YH +A+
Sbjct: 497 MEMSCET-LPEEKIQSVKIVDSEDLLKAVYSFEDVVLPLPGSETLFPGNEVARIYHEIAK 555
Query: 371 KDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKA 430
KDGI+L ES H +K+FSITSM G YRR+ Q+P+DFEW+L+TY D N PL TDLD
Sbjct: 556 KDGISLIESAHGIKDFSITSMKGGYRRILQRPIDFEWDLMTYTDDNTPLVPTDLD----- 610
Query: 431 KLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGA 490
++ E ++ N+ C S D +L + E +S+
Sbjct: 611 ----VLSEIQSSETNELLSDGTC----SCPSSDSQLQVSVVTSGPTIEASSAETKSIGIL 662
Query: 491 DSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
D +++A+KL TLP+S YATMAIREL KTSTSVA KTLN
Sbjct: 663 DLSPEKLAVKLEFTLPASSYATMAIRELTKTSTSVACQKTLN 704
>gi|242088431|ref|XP_002440048.1| hypothetical protein SORBIDRAFT_09g025030 [Sorghum bicolor]
gi|241945333|gb|EES18478.1| hypothetical protein SORBIDRAFT_09g025030 [Sorghum bicolor]
Length = 647
Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust.
Identities = 292/524 (55%), Positives = 357/524 (68%), Gaps = 63/524 (12%)
Query: 11 RGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKR 70
R D PFDSRGS NW + +GKFLRFHLYKENKDTQEALG+I KMLG+ PRSFGFAGTKDKR
Sbjct: 184 RDDTPFDSRGSSNWSDNVGKFLRFHLYKENKDTQEALGVIGKMLGLQPRSFGFAGTKDKR 243
Query: 71 SVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDS 130
+V+TQ+VTVFK +AS+LAALN RL GI++G+FCYVKEGL+LGQL GNRFTITLRGV +S
Sbjct: 244 AVTTQQVTVFKVQASRLAALNNRLFGIKVGNFCYVKEGLVLGQLTGNRFTITLRGVTAES 303
Query: 131 EDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERN 190
ED+IK + + LG+NGFINY+GLQR +
Sbjct: 304 EDMIKNAVDGLGKNGFINYYGLQR-----------------------------------D 328
Query: 191 EISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVH 250
+I++ R+ YKE DID LR PRHLVAERAILQCLKKCPGN+LQALK IPRTLRMMYVH
Sbjct: 329 DINEVRKRYKEHGDIDMALRNFPRHLVAERAILQCLKKCPGNHLQALKGIPRTLRMMYVH 388
Query: 251 SYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSH 310
SYQS+LWNHAAS RV+K+G VV GDLV+ K E E VN E+ + +S
Sbjct: 389 SYQSYLWNHAASMRVEKYGISQVVEGDLVYNKECPPE-ESTSVNI---LETDDGHTNSIE 444
Query: 311 LDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAE 370
+D E P+ VK V + D+ G YT DDVVLPLPGS+ ++P N+VAE+YH +A
Sbjct: 445 IDLCSEA-QPEESIQSVKIVDSGDLLKGIYTFDDVVLPLPGSQALFPGNEVAEIYHEMAR 503
Query: 371 KDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIA-- 428
KDGI+LTE+ H VKEFSITSM G YRRVFQ+P+ FEWEL+TY D + LAETDLD ++
Sbjct: 504 KDGISLTENAHGVKEFSITSMKGGYRRVFQRPIGFEWELMTYTDDSSSLAETDLDVLSRT 563
Query: 429 KAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVC 488
K K N + +E+ EK P + + S S++ KL +
Sbjct: 564 KPKEANELSNQESQ-DKLEKAPDTSVPTNRSSSQENKL--------------------IG 602
Query: 489 GADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
D+ +++ALKL TLP+SCYATMAIRELLKTSTSVA+ KTL+
Sbjct: 603 CPDTSPEKLALKLAFTLPASCYATMAIRELLKTSTSVAYQKTLS 646
>gi|218197076|gb|EEC79503.1| hypothetical protein OsI_20570 [Oryza sativa Indica Group]
Length = 659
Score = 549 bits (1415), Expect = e-153, Method: Compositional matrix adjust.
Identities = 287/522 (54%), Positives = 354/522 (67%), Gaps = 50/522 (9%)
Query: 11 RGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKR 70
R D PFDSRGS +WP +GKFLRFHL KENKDTQEALG+I KMLG+ RSFGFAGTKDKR
Sbjct: 187 RDDRPFDSRGSTSWPNHVGKFLRFHLCKENKDTQEALGVIGKMLGLQSRSFGFAGTKDKR 246
Query: 71 SVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDS 130
+V+TQ+VTVFK A++LAALN RL GI++G+F YVKEGL+LGQL+GNRFTITLRGVV +S
Sbjct: 247 AVTTQQVTVFKISANRLAALNNRLFGIKVGNFSYVKEGLVLGQLMGNRFTITLRGVVAES 306
Query: 131 EDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERN 190
ED+IKAS LG+NGFINY+GLQR +
Sbjct: 307 EDIIKASVEGLGKNGFINYYGLQR-----------------------------------D 331
Query: 191 EISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVH 250
+I + RE+YKE DID LR PRHLVAE+AILQCLKKCPGNYLQALK+IPRTLRMMYVH
Sbjct: 332 DIREMREHYKEHGDIDMALRNFPRHLVAEKAILQCLKKCPGNYLQALKSIPRTLRMMYVH 391
Query: 251 SYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSH 310
SYQS+LWNHAASARV+K+G V GDLV+ K E G E +D +SS
Sbjct: 392 SYQSYLWNHAASARVEKYGISQAVEGDLVYSK----EPPPGEATSVDTSEPCDDQINSSD 447
Query: 311 LDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAE 370
+D ET P+ VK V + D+ G Y+ +DVVLPLPGS+ ++P N +A++YH LA+
Sbjct: 448 IDLCSET-LPEETIQSVKIVDSEDLLKGVYSFEDVVLPLPGSQALFPGNGIADIYHELAK 506
Query: 371 KDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKA 430
KDGI+LTE+ H VKEFSITSM G YRRVFQ+P+DFEWEL+TY D LAETDLD +++
Sbjct: 507 KDGISLTENAHGVKEFSITSMKGGYRRVFQRPIDFEWELMTYTDDTASLAETDLDVLSRN 566
Query: 431 KLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGA 490
K KE + + S + S D K++ + + E +SV +
Sbjct: 567 KPTKA----------KEVNETISSAISNAQSHDSKVAGPLDSSMPGSETGLVEEKSVGSS 616
Query: 491 DSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
D +++A+KL TLP+S YATMAIRELLKTSTSV + KTL+
Sbjct: 617 DMLARKLAIKLAFTLPASSYATMAIRELLKTSTSVTYQKTLD 658
>gi|212276216|ref|NP_001130340.1| uncharacterized protein LOC100191435 [Zea mays]
gi|194688886|gb|ACF78527.1| unknown [Zea mays]
gi|414887739|tpg|DAA63753.1| TPA: hypothetical protein ZEAMMB73_196677 [Zea mays]
Length = 701
Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust.
Identities = 277/522 (53%), Positives = 343/522 (65%), Gaps = 29/522 (5%)
Query: 11 RGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKR 70
R D PFDSRGS WP LGKFLRFHLYKENKDT EALG+I K+ G+ PRSFGFAGTKDKR
Sbjct: 208 RDDKPFDSRGSTFWPYHLGKFLRFHLYKENKDTHEALGVIGKLAGVQPRSFGFAGTKDKR 267
Query: 71 SVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDS 130
+V+TQ+VTVFK AS+LAALN +L GIR+GDF YVKEGL LG+L GN F ITLR V+ +S
Sbjct: 268 AVTTQQVTVFKVHASRLAALNSKLTGIRVGDFSYVKEGLALGRLRGNHFAITLRNVIAES 327
Query: 131 EDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERN 190
D I A+ N L +NGFINY+GLQRFGSGSVPTH VGA LLRGEW+ AV +IL
Sbjct: 328 ADDINAAVNGLSKNGFINYYGLQRFGSGSVPTHFVGAALLRGEWRHAVSLIL-------- 379
Query: 191 EISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVH 250
R +YK D+D LR +PRHL ERAILQ LK PGNYLQAL AIP+ LR+MYVH
Sbjct: 380 ---GTRVHYKWHVDVDAALRGMPRHLTVERAILQRLKNYPGNYLQALMAIPKALRLMYVH 436
Query: 251 SYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSH 310
SYQS+LWNHAAS RV+K+G VV GDLV+ G + + + + N +
Sbjct: 437 SYQSYLWNHAASMRVEKYGISQVVEGDLVYKTGSSLGEAITTDTFDDDDSHVNSPEMEMS 496
Query: 311 LDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAE 370
+ + E VK V + D+ Y+ +DVVLPLPGS ++P N+V +YH +A+
Sbjct: 497 CETLTEE-----MIQSVKVVDSEDLLKAVYSFEDVVLPLPGSETLFPGNEVTMIYHEIAK 551
Query: 371 KDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKA 430
KDGI+L ES H +K+FSITSM G YRRV Q+P+DFEW+L+TY D N PL TDLD +++
Sbjct: 552 KDGISLIESAHGIKDFSITSMKGGYRRVLQRPIDFEWDLMTYTDDNTPLVPTDLDVLSET 611
Query: 431 KLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGA 490
+L N+ C S D +L + + E +S+ +
Sbjct: 612 QLSET---------NEPLSDGTC----SCPSSDSRLQVLLDTSGPTIEASSVETKSIGIS 658
Query: 491 DSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
D +++A+KL TLP+S YATMAIREL KTSTSVA KTLN
Sbjct: 659 DLSPEKLAVKLEFTLPASSYATMAIRELTKTSTSVACQKTLN 700
>gi|414887738|tpg|DAA63752.1| TPA: hypothetical protein ZEAMMB73_196677 [Zea mays]
Length = 706
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 272/515 (52%), Positives = 338/515 (65%), Gaps = 29/515 (5%)
Query: 11 RGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKR 70
R D PFDSRGS WP LGKFLRFHLYKENKDT EALG+I K+ G+ PRSFGFAGTKDKR
Sbjct: 208 RDDKPFDSRGSTFWPYHLGKFLRFHLYKENKDTHEALGVIGKLAGVQPRSFGFAGTKDKR 267
Query: 71 SVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDS 130
+V+TQ+VTVFK AS+LAALN +L GIR+GDF YVKEGL LG+L GN F ITLR V+ +S
Sbjct: 268 AVTTQQVTVFKVHASRLAALNSKLTGIRVGDFSYVKEGLALGRLRGNHFAITLRNVIAES 327
Query: 131 EDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERN 190
D I A+ N L +NGFINY+GLQRFGSGSVPTH VGA LLRGEW+ AV +IL
Sbjct: 328 ADDINAAVNGLSKNGFINYYGLQRFGSGSVPTHFVGAALLRGEWRHAVSLIL-------- 379
Query: 191 EISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVH 250
R +YK D+D LR +PRHL ERAILQ LK PGNYLQAL AIP+ LR+MYVH
Sbjct: 380 ---GTRVHYKWHVDVDAALRGMPRHLTVERAILQRLKNYPGNYLQALMAIPKALRLMYVH 436
Query: 251 SYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSH 310
SYQS+LWNHAAS RV+K+G VV GDLV+ G + + + + N +
Sbjct: 437 SYQSYLWNHAASMRVEKYGISQVVEGDLVYKTGSSLGEAITTDTFDDDDSHVNSPEMEMS 496
Query: 311 LDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAE 370
+ + E VK V + D+ Y+ +DVVLPLPGS ++P N+V +YH +A+
Sbjct: 497 CETLTEE-----MIQSVKVVDSEDLLKAVYSFEDVVLPLPGSETLFPGNEVTMIYHEIAK 551
Query: 371 KDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKA 430
KDGI+L ES H +K+FSITSM G YRRV Q+P+DFEW+L+TY D N PL TDLD +++
Sbjct: 552 KDGISLIESAHGIKDFSITSMKGGYRRVLQRPIDFEWDLMTYTDDNTPLVPTDLDVLSET 611
Query: 431 KLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGA 490
+L N+ C S D +L + + E +S+ +
Sbjct: 612 QLSET---------NEPLSDGTC----SCPSSDSRLQVLLDTSGPTIEASSVETKSIGIS 658
Query: 491 DSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSV 525
D +++A+KL TLP+S YATMAIREL KTSTSV
Sbjct: 659 DLSPEKLAVKLEFTLPASSYATMAIRELTKTSTSV 693
>gi|168005965|ref|XP_001755680.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692999|gb|EDQ79353.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 674
Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust.
Identities = 268/551 (48%), Positives = 350/551 (63%), Gaps = 83/551 (15%)
Query: 3 RNSKKRKERG---DNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPR 59
R K+ +E G + P+D+R S+ WP + KFLRFHLYKENKDTQ++L +I +ML + P+
Sbjct: 165 RFQKRGREHGGGLEQPYDARDSDGWPSERPKFLRFHLYKENKDTQDSLTVIGRMLHVQPK 224
Query: 60 SFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRF 119
+FGFAGTKDKR+++TQ+VTVFKQ A+K+AALN+RL G+R+G+F YV + L+LG L GNRF
Sbjct: 225 NFGFAGTKDKRAITTQQVTVFKQSAAKMAALNQRLFGMRVGNFSYVDKALVLGMLSGNRF 284
Query: 120 TITLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVK 179
TITLRGVV +++ I+ + LG +GFINYFGLQRFGSGS+ TH VGA L+RGEWK+A +
Sbjct: 285 TITLRGVVAETDKSIENAVKGLGESGFINYFGLQRFGSGSIATHNVGAALIRGEWKAAAE 344
Query: 180 MILDPREGE-------------------RNEISKAREYYKETDDIDGTLRKLPRHLVAER 220
+ILDPRE + + E+ +AREY+K+T ++DG L K PR+L AER
Sbjct: 345 LILDPREEDILSCLLLLSFFYSLTSETHQPEVKEAREYFKKTGNVDGALHKFPRYLTAER 404
Query: 221 AILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVF 280
AIL LK+ NYLQA+ +IPRTLR+MYVHSYQSFLWNHAAS R + +G + VV GDLV+
Sbjct: 405 AILGSLKRDSKNYLQAICSIPRTLRLMYVHSYQSFLWNHAASYRAKTYGVDKVVEGDLVY 464
Query: 281 CK---GDDTEKELGCVNPEFEYESSNDADDSSH---LDEVPETDHPDGRHNLVKTVTAAD 334
K G D E V F ND++ + LD+V E D P N +K +T D
Sbjct: 465 DKDLQGTDEAPESKIVESSF-----NDSEVRAPEVLLDDVVEADVPAEASNKIKCLTKED 519
Query: 335 INSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGN 394
+ SGKY I DV+LPLPG I+P N A+VYH LA KD ++L +S HNVKEF++ + G
Sbjct: 520 VASGKYNISDVLLPLPGGSSIFPANGTADVYHDLASKDSVDLQKSTHNVKEFALPLLPGA 579
Query: 395 YRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCM 454
YR QKP++ EW++L Y D K LAETDLD+I K
Sbjct: 580 YRLFLQKPVNLEWKILKYSDPTKTLAETDLDRIQKV------------------------ 615
Query: 455 KQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMA 514
SE ++D K EN +Q A +L TLP+SCYATMA
Sbjct: 616 --SEESTEDSKNKVEN------------------------EQTAFQLSFTLPASCYATMA 649
Query: 515 IRELLKTSTSV 525
+REL+K STSV
Sbjct: 650 LRELMKISTSV 660
>gi|222632178|gb|EEE64310.1| hypothetical protein OsJ_19147 [Oryza sativa Japonica Group]
Length = 642
Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust.
Identities = 257/429 (59%), Positives = 304/429 (70%), Gaps = 45/429 (10%)
Query: 11 RGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKR 70
R D PFDSRGS +WP +GKFLRFHL KENKDTQEALG+I KMLG+ RSFGFAGTKDKR
Sbjct: 187 RDDRPFDSRGSTSWPNHVGKFLRFHLCKENKDTQEALGVIGKMLGLQSRSFGFAGTKDKR 246
Query: 71 SVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDS 130
+V+TQ+VTVFK A++LAALN RL GI++G+F YVKEGL+LGQL+GNRFTITLRGVV +S
Sbjct: 247 AVTTQQVTVFKISANRLAALNNRLFGIKVGNFSYVKEGLVLGQLMGNRFTITLRGVVAES 306
Query: 131 EDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERN 190
ED+IKAS LG+NGFINY+GLQR +
Sbjct: 307 EDIIKASVEGLGKNGFINYYGLQR-----------------------------------D 331
Query: 191 EISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVH 250
+I + RE+YKE DID LR PRHLVAE+AILQCLKKCPGNYLQALK+IPRTLRMMYVH
Sbjct: 332 DIREMREHYKEHGDIDMALRNFPRHLVAEKAILQCLKKCPGNYLQALKSIPRTLRMMYVH 391
Query: 251 SYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSH 310
SYQS+LWNHAASARV+K+G V GDLV+ K E G E +D +SS
Sbjct: 392 SYQSYLWNHAASARVEKYGISQAVEGDLVYSK----EPPPGEATSVDTSEPCDDQINSSD 447
Query: 311 LDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAE 370
+D ET P+ VK V + D+ G YT +DVVLPLPGS+ ++P N +A++YH LA+
Sbjct: 448 IDLCSET-LPEETIQSVKIVDSEDLLKGVYTFEDVVLPLPGSQALFPGNGIADIYHELAK 506
Query: 371 KDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLD----- 425
KDGI+LTE+ H VKEFSITSM G YRRVFQ+P+DFEWEL+TY D LAETDLD
Sbjct: 507 KDGISLTENAHGVKEFSITSMKGGYRRVFQRPIDFEWELMTYTDDTASLAETDLDVLSRN 566
Query: 426 KIAKAKLVN 434
K KAK VN
Sbjct: 567 KPTKAKEVN 575
>gi|413949789|gb|AFW82438.1| hypothetical protein ZEAMMB73_597944 [Zea mays]
Length = 524
Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust.
Identities = 241/361 (66%), Positives = 286/361 (79%), Gaps = 5/361 (1%)
Query: 11 RGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKR 70
R PFDSRGS NWP+ +GKFLRFHLYKENKDTQEALG+I KMLG+ PRSFGFAGTKDKR
Sbjct: 155 RDGRPFDSRGSSNWPDNVGKFLRFHLYKENKDTQEALGVIGKMLGLQPRSFGFAGTKDKR 214
Query: 71 SVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDS 130
+V+TQ+VTVFK +ASKL ALNKRL GI++G+FCYVKEGL+LGQL GNRFTITLRGV +S
Sbjct: 215 AVTTQQVTVFKVQASKLLALNKRLFGIKVGNFCYVKEGLVLGQLTGNRFTITLRGVTAES 274
Query: 131 EDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERN 190
ED+IK + + LG+NGFINY+GLQRFGSGS+PTHLVGA LLRGEWK AV +ILDPREGER+
Sbjct: 275 EDMIKIAVDGLGKNGFINYYGLQRFGSGSIPTHLVGAALLRGEWKVAVNLILDPREGERD 334
Query: 191 EISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVH 250
+I++ R+ YKE DID LR PRHLVAERAILQCLKKCPGN+LQALK IPRTLRMMYVH
Sbjct: 335 DINEVRKRYKEHGDIDMALRNFPRHLVAERAILQCLKKCPGNHLQALKGIPRTLRMMYVH 394
Query: 251 SYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSH 310
SYQS+LWNHAAS RV+K+G VV GDLV+ K +E E V+ E+ +D +S
Sbjct: 395 SYQSYLWNHAASMRVEKYGISQVVEGDLVYNKECPSE-ESTSVDI---LETDDDHTNSIE 450
Query: 311 LDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAE 370
+D E P+ K V + D G YT DDVVLPLPGS+ ++P N++AE+YH +A
Sbjct: 451 IDLCSEA-QPEESIQSAKIVDSGDFTKGIYTFDDVVLPLPGSQALFPGNEIAEIYHEMAR 509
Query: 371 K 371
K
Sbjct: 510 K 510
>gi|223946595|gb|ACN27381.1| unknown [Zea mays]
gi|414887737|tpg|DAA63751.1| TPA: hypothetical protein ZEAMMB73_196677 [Zea mays]
Length = 678
Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust.
Identities = 260/522 (49%), Positives = 323/522 (61%), Gaps = 52/522 (9%)
Query: 11 RGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKR 70
R D PFDSRGS WP LGKFLRFHLYKENKDT EALG+I K+ G+ PRSFGFAGTKDKR
Sbjct: 208 RDDKPFDSRGSTFWPYHLGKFLRFHLYKENKDTHEALGVIGKLAGVQPRSFGFAGTKDKR 267
Query: 71 SVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDS 130
+V+TQ+VTVFK AS+LAALN +L GIR+GDF YVKEGL LG+L GN F ITLR V+ +S
Sbjct: 268 AVTTQQVTVFKVHASRLAALNSKLTGIRVGDFSYVKEGLALGRLRGNHFAITLRNVIAES 327
Query: 131 EDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERN 190
D I A+ N L +NGFINY+GLQRFGSGSVPTH VGA LLRGEW+ AV +IL
Sbjct: 328 ADDINAAVNGLSKNGFINYYGLQRFGSGSVPTHFVGAALLRGEWRHAVSLIL-------- 379
Query: 191 EISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVH 250
R +YK D+D LR +PRHL ERAILQ LK PGNYLQAL AIP+ LR+MYVH
Sbjct: 380 ---GTRVHYKWHVDVDAALRGMPRHLTVERAILQRLKNYPGNYLQALMAIPKALRLMYVH 436
Query: 251 SYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSH 310
SYQS+LWNHAAS RV+K+G VV GDLV+ G + + + + N +
Sbjct: 437 SYQSYLWNHAASMRVEKYGISQVVEGDLVYKTGSSLGEAITTDTFDDDDSHVNSPEMEMS 496
Query: 311 LDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAE 370
+ + E VK V + D+ Y+ +DVVLPLPGS ++P N+V +YH +A+
Sbjct: 497 CETLTEE-----MIQSVKVVDSEDLLKAVYSFEDVVLPLPGSETLFPGNEVTMIYHEIAK 551
Query: 371 KDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKA 430
KDGI+L ES H +K +L+TY D N PL TDLD +++
Sbjct: 552 KDGISLIESAHGIK-----------------------DLMTYTDDNTPLVPTDLDVLSET 588
Query: 431 KLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGA 490
+L N+ C S D +L + + E +S+ +
Sbjct: 589 QLSET---------NEPLSDGTC----SCPSSDSRLQVLLDTSGPTIEASSVETKSIGIS 635
Query: 491 DSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
D +++A+KL TLP+S YATMAIREL KTSTSVA KTLN
Sbjct: 636 DLSPEKLAVKLEFTLPASSYATMAIRELTKTSTSVACQKTLN 677
>gi|302764702|ref|XP_002965772.1| hypothetical protein SELMODRAFT_439240 [Selaginella moellendorffii]
gi|300166586|gb|EFJ33192.1| hypothetical protein SELMODRAFT_439240 [Selaginella moellendorffii]
Length = 660
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 247/549 (44%), Positives = 338/549 (61%), Gaps = 75/549 (13%)
Query: 2 GRNSKKRKERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSF 61
G SK++++ GD FD R WP KF +F+LYKENK TQ AL ++++ +G+ ++
Sbjct: 168 GYESKRQRQDGDK-FDRRAGNYWPADRHKFCQFYLYKENKTTQSALMIVAQKIGVKAKNM 226
Query: 62 GFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTI 121
GFAGTKDKR+V+TQRVTV+K A++LAALNK L GI+LG+F YV++GL+LG+L GNRF +
Sbjct: 227 GFAGTKDKRAVTTQRVTVYKHSATQLAALNKSLFGIKLGNFSYVEKGLVLGELSGNRFNV 286
Query: 122 TLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMI 181
LR VV +SE+ IK +A +G +GFINY+GLQRFGS VPTH +GA LL+G+WK+AV +I
Sbjct: 287 ILRDVVAESENAIKEAAEGMGNSGFINYYGLQRFGSCGVPTHAIGAKLLQGDWKTAVDLI 346
Query: 182 LDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIP 241
L REG++ ++R+ +K + L+ +P H++AERAIL LKK P NYLQA++ IP
Sbjct: 347 LQEREGDQQAAEESRKIFKTAGPAEA-LKLMPHHMIAERAILLGLKKDPANYLQAIQNIP 405
Query: 242 RTLRMMYVHSYQSFLWNHAASARVQKH-----------------GTEHVVVGDLVFCKGD 284
R +RMMYVHSYQS+LWN AASAR+QK+ G + VV GDLV+C+ D
Sbjct: 406 RPMRMMYVHSYQSYLWNSAASARIQKYGNPLLSFSNGVKDVAFTGVDAVVEGDLVYCQED 465
Query: 285 DTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDD 344
+ KE G + E E D D+ L++ + VK VTA DI KY I D
Sbjct: 466 EISKEAGKDDVELE-----DLVDTDVLEDDARMELARPSRKKVKHVTAEDIALKKYAITD 520
Query: 345 VVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMD 404
VVLPL GS +YP NDVA+VY+ + + + I+L HNVKEFS+ +TG YR + KP+D
Sbjct: 521 VVLPLVGSTTVYPSNDVADVYNKITKMESIDLKSCTHNVKEFSVEYLTGAYRNLLVKPID 580
Query: 405 FEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDI 464
FEW L +Y D PL +TD+D + +DPS + + ++ S
Sbjct: 581 FEWRLSSYSDSRNPLTKTDMDLL--------------------QDPSTSLPEEDANS--- 617
Query: 465 KLSTENNEAACAKEVKQPHVESVCGADSQGKQ-MALKLGLTLPSSCYATMAIRELLKTST 523
+QG +AL+L TLP+S YATMAIRE++K ST
Sbjct: 618 ---------------------------TQGPSLLALQLQFTLPTSAYATMAIREVMKMST 650
Query: 524 SVAFHKTLN 532
SV+ HK L+
Sbjct: 651 SVSLHKLLS 659
>gi|413949790|gb|AFW82439.1| hypothetical protein ZEAMMB73_597944 [Zea mays]
Length = 418
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 202/260 (77%), Positives = 230/260 (88%)
Query: 11 RGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKR 70
R PFDSRGS NWP+ +GKFLRFHLYKENKDTQEALG+I KMLG+ PRSFGFAGTKDKR
Sbjct: 155 RDGRPFDSRGSSNWPDNVGKFLRFHLYKENKDTQEALGVIGKMLGLQPRSFGFAGTKDKR 214
Query: 71 SVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDS 130
+V+TQ+VTVFK +ASKL ALNKRL GI++G+FCYVKEGL+LGQL GNRFTITLRGV +S
Sbjct: 215 AVTTQQVTVFKVQASKLLALNKRLFGIKVGNFCYVKEGLVLGQLTGNRFTITLRGVTAES 274
Query: 131 EDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERN 190
ED+IK + + LG+NGFINY+GLQRFGSGS+PTHLVGA LLRGEWK AV +ILDPREGER+
Sbjct: 275 EDMIKIAVDGLGKNGFINYYGLQRFGSGSIPTHLVGAALLRGEWKVAVNLILDPREGERD 334
Query: 191 EISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVH 250
+I++ R+ YKE DID LR PRHLVAERAILQCLKKCPGN+LQALK IPRTLRMMYVH
Sbjct: 335 DINEVRKRYKEHGDIDMALRNFPRHLVAERAILQCLKKCPGNHLQALKGIPRTLRMMYVH 394
Query: 251 SYQSFLWNHAASARVQKHGT 270
SYQS+LWNHAAS RV+KH T
Sbjct: 395 SYQSYLWNHAASMRVEKHLT 414
>gi|302805392|ref|XP_002984447.1| hypothetical protein SELMODRAFT_423685 [Selaginella moellendorffii]
gi|300147835|gb|EFJ14497.1| hypothetical protein SELMODRAFT_423685 [Selaginella moellendorffii]
Length = 625
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 225/549 (40%), Positives = 310/549 (56%), Gaps = 110/549 (20%)
Query: 2 GRNSKKRKERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSF 61
G +SK++++ GD FD R WP KF +F+LYKENK TQ AL ++++ +G+ ++
Sbjct: 168 GHDSKRQRQDGDK-FDRRAGNYWPADRHKFCQFYLYKENKTTQSALMIVAQKIGVKAKNM 226
Query: 62 GFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTI 121
GFAGTKDKR+V+TQRVTV+K A++LAALNK L GI+LG+F YV++GL+LG+L GNRF +
Sbjct: 227 GFAGTKDKRAVTTQRVTVYKHSATQLAALNKALFGIKLGNFSYVEKGLVLGELSGNRFNV 286
Query: 122 TLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMI 181
LR VV +SE IK +A +G +GFINY+GLQ+ +
Sbjct: 287 ILRDVVAESEHAIKEAAEGMGNSGFINYYGLQQQAA------------------------ 322
Query: 182 LDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIP 241
++R+ +K + L+ +P H++AERAIL LKK P NYLQA++ IP
Sbjct: 323 -----------EESRKIFKTAGPAEA-LKLMPHHMIAERAILLGLKKDPANYLQAIQNIP 370
Query: 242 RTLRMMYVHSYQSFLWNHAASARVQKHG-----------------TEHVVVGDLVFCKGD 284
R +RMMYVHSYQS+LWN AAS R+QK+G + VV GDLV+C+ D
Sbjct: 371 RPMRMMYVHSYQSYLWNSAASTRIQKYGNPLLSFSNGVKDVAFTGVDAVVEGDLVYCQED 430
Query: 285 DTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDD 344
+ KE G + + E D + D E P + VK VTA DI S KY I D
Sbjct: 431 EISKEAGKDDVDLEDLVDTDVLED---DACMELARPSRKK--VKHVTAEDIASKKYAITD 485
Query: 345 VVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMD 404
VVLPL GS +YP NDVA+VY+ + + + I+L HNVKEFS+ +TG YR + KP+D
Sbjct: 486 VVLPLVGSTTVYPSNDVADVYNKITKMESIDLKSCTHNVKEFSVEYLTGAYRNLLVKPID 545
Query: 405 FEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDI 464
FEW L +Y D PL +TD+D + +DPS + + ++ S
Sbjct: 546 FEWRLSSYSDARNPLTKTDMDLL--------------------QDPSTSLPEEDANS--- 582
Query: 465 KLSTENNEAACAKEVKQPHVESVCGADSQGKQ-MALKLGLTLPSSCYATMAIRELLKTST 523
+QG +AL+L TLP+S YATMAIRE++K ST
Sbjct: 583 ---------------------------TQGPSLLALQLQFTLPTSAYATMAIREVMKMST 615
Query: 524 SVAFHKTLN 532
SV+ HK L+
Sbjct: 616 SVSVHKLLS 624
>gi|255074741|ref|XP_002501045.1| predicted protein [Micromonas sp. RCC299]
gi|226516308|gb|ACO62303.1| predicted protein [Micromonas sp. RCC299]
Length = 704
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 209/530 (39%), Positives = 309/530 (58%), Gaps = 80/530 (15%)
Query: 2 GRNSKKRKERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSF 61
G N +++ R D +G WP L ++L F L KENKDT +A+G++S++L + PRSF
Sbjct: 243 GGNGGQKRNR-DEGGGWKGHRRWPANLPQYLEFTLCKENKDTGDAIGVLSRILHVKPRSF 301
Query: 62 GFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTI 121
GFAGTKD+R V++QRVT+FK RA+++A L RL+G+++G++ YV L LG L GN FT+
Sbjct: 302 GFAGTKDRRGVTSQRVTIFKVRAARMAKL--RLLGMKVGNYRYVDRDLRLGDLKGNLFTL 359
Query: 122 TLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMI 181
TLRG+ S+ I + +L +GFINYFGLQRFGS S+ TH+VGA LLRG W+ AV +I
Sbjct: 360 TLRGIEEGSQLSISEAVRTLRTSGFINYFGLQRFGSHSIGTHVVGAALLRGAWEEAVDLI 419
Query: 182 LDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGN-YLQALKAI 240
L PR+G++ +++ AR +KE + L+ +P VAER++L+ L + N Y+ A +I
Sbjct: 420 LRPRDGDKPQVAMARSIFKEQGNAAAALKHMPTWCVAERSLLEGLVRAQKNDYVSAFSSI 479
Query: 241 PRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYE 300
PRT R MYVH+YQS+LWN AAS RV++HG + VV GDL+ + GC +
Sbjct: 480 PRTTRKMYVHAYQSYLWNRAASERVRRHGLQRVVAGDLII--------DTGC-------Q 524
Query: 301 SSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMND 360
+ D +D + D + V+ VT + ++G ++I DVVLPLPGSRVIY
Sbjct: 525 TDIDNEDGDN----------DWIFSNVREVTPEEASAGVFSITDVVLPLPGSRVIYS-ES 573
Query: 361 VAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLA 420
V ++Y + + DG+ L H+V+E+S +TG YRR+ KP +++ + Y D + LA
Sbjct: 574 VQKIYEEICQSDGVQLVGFAHSVREYSFGYLTGAYRRLVTKPDKVKFDFVRYSDPSADLA 633
Query: 421 ETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVK 480
ETDL ++ + D +K +
Sbjct: 634 ETDLARLQPVQ-------------------HDTVKPA----------------------- 651
Query: 481 QPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKT 530
G +G+ +AL+L +LP++ YATMAIREL+K+S+S A HK
Sbjct: 652 --------GKAEEGELLALRLSFSLPTASYATMAIRELMKSSSSQASHKA 693
>gi|384251513|gb|EIE24990.1| tRNA pseudouridine synthase D [Coccomyxa subellipsoidea C-169]
Length = 691
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 216/507 (42%), Positives = 282/507 (55%), Gaps = 68/507 (13%)
Query: 30 KFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAA 89
K+ RF L KEN D+ AL L+++ + P FG AGTKDKR+V+ Q+VT FK S+LA+
Sbjct: 245 KYCRFALCKENMDSGHALSLLARAVHCSPSCFGVAGTKDKRAVTVQQVTAFKVAPSRLAS 304
Query: 90 LNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINY 149
N RL G+R+GDF V E L LG GNRF +TLR V S + A+ ++ +GFINY
Sbjct: 305 SNGRLRGMRVGDFELVDEPLHLGDAKGNRFEVTLRDVGAGSLHDVVAAVEAVREDGFINY 364
Query: 150 FGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDDIDGTL 209
FGLQRFGS TH +GA LL+GEWK+AV MIL EGER++ +AR Y E D+ G L
Sbjct: 365 FGLQRFGSTGGRTHRIGALLLKGEWKAAVDMILGRIEGERSDNDEARRLYLEEGDVSGAL 424
Query: 210 RKLPRHLVAERAILQCLKKCPG-NYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKH 268
+ + RHL AERA+L+ L+K G N+ QAL+ IPR R MYVH+YQS LWN AAS RV+
Sbjct: 425 KLMQRHLTAERALLEGLRKQKGANFCQALQQIPRNTRTMYVHAYQSRLWNEAASHRVRTF 484
Query: 269 GTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDH-PDGRHNLV 327
G + V GDLV + L + PE P H
Sbjct: 485 GAKEAVAGDLVLPRDAAEAA-----------PEEEAEAADEQLAQQPERGRLPAEAH--- 530
Query: 328 KTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFS 387
VT + S +Y+IDDVVLPLPG RV YP + A+VY LA KDGI L + H V++FS
Sbjct: 531 -VVTEEEAASARYSIDDVVLPLPGCRVQYPRHATAQVYRDLAAKDGIPLDSAPHGVRDFS 589
Query: 388 ITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKI--AKAKLVNIVKEEEAVCGN 445
+T++ G YRR+ +P D W LL Y D + PLA + LD++ VN ++ E V
Sbjct: 590 MTALPGGYRRLLHRPRDLNWRLLRYSDPDAPLALSTLDRLTGVAPPAVNAIESGEEV--- 646
Query: 446 KEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTL 505
GA G+++AL+L +L
Sbjct: 647 -------------------------------------------GA---GEKIALQLAFSL 660
Query: 506 PSSCYATMAIRELLKTSTSVAFHKTLN 532
PSS YATM +REL KTST+ AFHK+L+
Sbjct: 661 PSSTYATMLVRELTKTSTATAFHKSLS 687
>gi|303274972|ref|XP_003056796.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461148|gb|EEH58441.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 644
Score = 364 bits (934), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 199/510 (39%), Positives = 286/510 (56%), Gaps = 79/510 (15%)
Query: 20 GSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTV 79
G + WP +L F L KENKDT +A+G++S++L + PR FGFAGTKD+R V++Q VTV
Sbjct: 203 GHQRWPSDQPHYLEFVLCKENKDTGDAIGVLSRILHVKPRQFGFAGTKDRRGVTSQLVTV 262
Query: 80 FKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASAN 139
K RA +LA L L G++LG+F YV L LG L GN FT+TLRG+ S++ + + N
Sbjct: 263 HKVRAKRLAKLT--LHGMKLGNFRYVDRSLGLGDLKGNLFTLTLRGLERGSKETVMKAVN 320
Query: 140 SLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYY 199
+L +GF+NYFGLQRFG+ +PTH +G+ LLRG W V +I+ PR+ +++++++AR+ Y
Sbjct: 321 ALKSSGFVNYFGLQRFGTHKIPTHAIGSALLRGSWSEVVDLIMQPRDADKDDVAEARKVY 380
Query: 200 KETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNH 259
KET D L+ +PR +AER +L+ L KC G+ + A+ AIPR RMMYVH+YQS+++N
Sbjct: 381 KETRDAAAALKLMPRFCLAERGLLEGLVKCKGDIIGAINAIPRPTRMMYVHAYQSYMFNR 440
Query: 260 AASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDH 319
AAS RV+ HG + V GDL+F DD + + + D+
Sbjct: 441 AASERVRLHGADRAVEGDLIF-------------------------DDRGDIYQSDDEDN 475
Query: 320 PDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTES 379
D V+ VTA + G Y I DV+LPLPG +VIYP V +Y + + +G+ L
Sbjct: 476 NDVMFANVREVTAEEAARGTYKITDVLLPLPGFKVIYP-ERVKVLYEDICKAEGVLLEGC 534
Query: 380 LHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEE 439
H +KE+S +TG YRR+ KP E+E +Y D L ETD+ +I
Sbjct: 535 AHPIKEYSFGFLTGAYRRLLVKPDKLEFEFQSYSDPKADLTETDMSRI------------ 582
Query: 440 EAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMAL 499
++ P++ S G + K +AL
Sbjct: 583 ---------------------------------------LRVPNIVSADGEEKDEKFLAL 603
Query: 500 KLGLTLPSSCYATMAIRELLKTSTSVAFHK 529
+L L LP+S YATMA+REL+K STS H+
Sbjct: 604 RLSLALPTSSYATMALRELMKLSTSKQTHR 633
>gi|440800978|gb|ELR22003.1| tRNA pseudouridine synthase D, putative [Acanthamoeba castellanii
str. Neff]
Length = 739
Score = 355 bits (911), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 205/513 (39%), Positives = 283/513 (55%), Gaps = 72/513 (14%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
WP G +L+F LYKENKDT A+GL++K F +AGTKDKR V+TQ +T++
Sbjct: 283 QWPTCWGDYLQFVLYKENKDTTAAVGLLAKFTNARASRFSYAGTKDKRGVTTQHMTIYHM 342
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
RA +L LN +L G+R+G+F YV + L LG L GNRF++ LR V SE+ I S L
Sbjct: 343 RAEQLRGLNAKLYGMRVGNFSYVSQQLRLGDLFGNRFSVVLREVSA-SEEEINHSLTELK 401
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKET 202
R GF+NY+GLQRFG+GSV TH VG LL+G+WK A +IL PR GE E AR+Y+ ET
Sbjct: 402 RTGFVNYYGLQRFGTGSVATHRVGIALLQGQWKEAADLILQPRTGEEQECESARKYWAET 461
Query: 203 DDIDGTLRKLPRHLVAERAILQCLKKC-PGNYLQALKAIPRTLRMMYVHSYQSFLWNHAA 261
DI+GTLRKLPR L ER +LQ +K +L A + +PR LRM+Y HSYQS++WN A
Sbjct: 462 GDINGTLRKLPRQLFIERLLLQGYQKMGKTQHLAAFQTLPRNLRMLYPHSYQSYVWNCMA 521
Query: 262 SARVQKHGTEHVVVGDLVF--CKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDH 319
S RV+K+G + VVGDLV KG D + + V+ + E + D++ P+
Sbjct: 522 SERVRKYGADKPVVGDLVLLDTKGRDIGEPVDEVDDKMGEEGEEEEIDNAEDANAPKYS- 580
Query: 320 PDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTES 379
VK +T D+ + YTI DVVLPLPG ++ +P N++ Y + G++++
Sbjct: 581 -------VKVLTEEDLPN--YTIYDVVLPLPGCQIRFPENEIGAAYQRTLAEQGLSVSTF 631
Query: 380 LHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKI-AKAKLVNIVKE 438
H V++F + G+YRR+ KP+D EWE + + N L TDLDK+ KA L
Sbjct: 632 NHKVRDF---RLPGSYRRLLGKPIDLEWEFMYCDNPNADLLPTDLDKLEGKAPL------ 682
Query: 439 EEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMA 498
PS + + G+ A
Sbjct: 683 -----------PSQGL-------------------------------------TTGRHRA 694
Query: 499 LKLGLTLPSSCYATMAIRELLKTSTSVAFHKTL 531
+K+ TL SS YATM +RE++K +SV K L
Sbjct: 695 VKVSFTLGSSSYATMLLREMMKQDSSVDVQKRL 727
>gi|328875465|gb|EGG23829.1| tRNA pseudouridine synthase D [Dictyostelium fasciculatum]
Length = 717
Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 194/506 (38%), Positives = 287/506 (56%), Gaps = 65/506 (12%)
Query: 24 WPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQR 83
W KF++F L+KENK+ +A+G++S ++ + RSF FAGTKDKR V++QRVTV++Q
Sbjct: 205 WGGDKPKFVQFVLHKENKELLDAIGILSNVMHVNQRSFSFAGTKDKRGVTSQRVTVYRQS 264
Query: 84 ASKLAALNKRLIG-IRLG-DFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSL 141
+ A N+RL IR+G DF YV + L+LG L GNRFT+ +R V D E +I S L
Sbjct: 265 PENIVAANQRLFSSIRVGGDFKYVDKHLMLGDLNGNRFTVVIRDVSGDDE-LIAESVAQL 323
Query: 142 GRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKE 201
GFINY+GLQRFG+GSV T+ VG +++G W++AV +IL PREGE + KAR YKE
Sbjct: 324 NHTGFINYYGLQRFGTGSVSTNQVGLEVIKGNWENAVMLILGPREGENEDFIKARTKYKE 383
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAA 261
D D L+ LP+++V+ER +L LK+ + A+ ++PRTLRM+Y HSYQS++WN A
Sbjct: 384 NGDADALLQALPKYMVSERKLLMVLKRDKKGFYNAINSLPRTLRMLYPHSYQSYIWNKMA 443
Query: 262 SARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVP--ETDH 319
S R+ K G + VVVGDLV ++ K+ + + N+ + S + E+P +
Sbjct: 444 SERITKFGFKEVVVGDLVAVSKNNNNKQQQQEK---QKDEKNEEEGSGDVVEMPVEDDGG 500
Query: 320 PDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTES 379
D V VT DI + +YTID VVLP+PGS ++YP N++ + Y + +DG++ +
Sbjct: 501 DDKDDYQVTHVTEDDIKNKRYTIDQVVLPMPGSNIVYPSNEIGQRYKEVMLEDGVDEAKI 560
Query: 380 LHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEE 439
HN + + + G+YR++ +P++ E+++ Y PLA +DLD++
Sbjct: 561 NHN--KTKVFHLKGSYRKIISRPINLEYKIYRYDSAKIPLALSDLDRL------------ 606
Query: 440 EAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMAL 499
N +++P D GK AL
Sbjct: 607 -----NGKEEPQDL--------------------------------------PDGKYKAL 623
Query: 500 KLGLTLPSSCYATMAIRELLKTSTSV 525
+L +LPSS YATM RELLK T+V
Sbjct: 624 RLSFSLPSSSYATMVYRELLKQPTNV 649
>gi|307108044|gb|EFN56285.1| hypothetical protein CHLNCDRAFT_145167 [Chlorella variabilis]
Length = 709
Score = 327 bits (837), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 201/541 (37%), Positives = 280/541 (51%), Gaps = 101/541 (18%)
Query: 2 GRNSKKRKERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSF 61
G +KRK R D+ WP ++ +F L+KEN D+Q A+ ++K+L + + F
Sbjct: 236 GGRGQKRKWRDDS--------GWPGGSLRYTKFVLFKENMDSQHAISSLAKLLHVSHKLF 287
Query: 62 GFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTI 121
AGTKDKR V+ Q+VT FK ++LAALN RL G+ F +
Sbjct: 288 AIAGTKDKRGVTVQQVTAFKLDPARLAALNPRLRGM---------------------FEL 326
Query: 122 TLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMI 181
LR + +S + A+ ++L +GFINY+GLQRFG+G+VPTH VG LL G+W+ AV+++
Sbjct: 327 VLRAIKAESATEVAAAVDALRLSGFINYYGLQRFGTGAVPTHRVGQALLCGQWRDAVRLL 386
Query: 182 LDPREG-ERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKK-CPGNYLQALKA 239
L PR+ R E ++A Y E D++G+LR +PR LV E +LQ LK+ P +L AL
Sbjct: 387 LTPRDDCPRPEQAEACRLYLEQGDVEGSLRLMPRFLVTEPTLLQGLKQHGPNGFLNALMM 446
Query: 240 IPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEY 299
+PR LR +Y+H+YQS+LWN AAS RVQ +G VV GDLV + N
Sbjct: 447 LPRNLRTIYIHAYQSYLWNAAASHRVQTYGPSAVVAGDLVLPY--SARQRSAARN----- 499
Query: 300 ESSNDADDSSHLDEVPETDHPDGRHN---------LVKTVTAADINSGKYTIDDVVLPLP 350
S ++ EV ETD D N V VT + +G + ++DVVLPLP
Sbjct: 500 -RSRPGVPAAVAGEVVETDA-DAAANEEEHVSAAVKVHVVTVEEAAAGAWRMEDVVLPLP 557
Query: 351 GSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELL 410
GS V+YP + A+VY LA DG++L S H K+FSI +TG YR + +P D E+EL+
Sbjct: 558 GSEVLYPQHGTADVYLQLAAADGVSLDSSPHGSKDFSIMELTGAYRHLLHRPADLEYELV 617
Query: 411 TYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTEN 470
Y + LA TDL ++ +L + ++ SDC
Sbjct: 618 RYSHPDIDLASTDLMELRGEQLPAPISDKS----------SDCY---------------- 651
Query: 471 NEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKT 530
+AL+L TLPSSCYATM IREL K +S A HK
Sbjct: 652 --------------------------LALRLAFTLPSSCYATMLIRELTKQPSSTAHHKA 685
Query: 531 L 531
L
Sbjct: 686 L 686
>gi|330798878|ref|XP_003287476.1| hypothetical protein DICPUDRAFT_32540 [Dictyostelium purpureum]
gi|325082495|gb|EGC35975.1| hypothetical protein DICPUDRAFT_32540 [Dictyostelium purpureum]
Length = 635
Score = 318 bits (816), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 185/508 (36%), Positives = 262/508 (51%), Gaps = 104/508 (20%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+WPE K+++F L KEN+DT + + +IS+MLG ++F AGTKDKR ++TQR+TV+K
Sbjct: 176 SWPEDKSKYIQFVLCKENRDTMDTISMISRMLGTSDKNFSIAGTKDKRGITTQRITVYKV 235
Query: 83 RASKLAALNKRLIGIR----LGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASA 138
+LA LN+RL R LG++ +V + + LG L+GNRF++ +R + ++ I S
Sbjct: 236 TPDRLANLNQRLSTQRPPIGLGEYKFVNQHIRLGDLMGNRFSVVIREIQDATDQDIIDSV 295
Query: 139 NSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREY 198
S + GFINYFGLQRFG+GS+PT+ +G +++ WK AV +ILDPREGER E +KAR+Y
Sbjct: 296 ESFKKTGFINYFGLQRFGTGSIPTYEIGIAMIQNNWKKAVDLILDPREGEREEATKARQY 355
Query: 199 YKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWN 258
YK+T D T+ LPR L AE+ +L LK NY A +IPRTLRM+Y HSYQS +WN
Sbjct: 356 YKDTGDAKTTITMLPRGLNAEKKLLIALKGGSTNYQDAFYSIPRTLRMLYTHSYQSLIWN 415
Query: 259 HAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETD 318
AS R++ G + +VGDLV +E G
Sbjct: 416 LMASQRIEMFGFDKPIVGDLVI-------EEAG--------------------------- 441
Query: 319 HPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTE 378
V VT DI + +YTI VVLPL GS P N + E+Y EK INL++
Sbjct: 442 --------VDYVTEEDIKNNRYTIHQVVLPLIGSNTQLPKNIIGELYIKEMEKSNINLSQ 493
Query: 379 SLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKE 438
+ + + G YR++ + D +++ Y D PLA +D+D +
Sbjct: 494 FTTKNR---LIDLRGGYRKLIEHASDCTYKIFNYDDFTIPLALSDIDYL----------- 539
Query: 439 EEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMA 498
N +P D GK A
Sbjct: 540 ------NGSAEPVDV--------------------------------------PNGKHKA 555
Query: 499 LKLGLTLPSSCYATMAIRELLKTSTSVA 526
L++ L SS YATMA RE+LKTS+ ++
Sbjct: 556 LRICFNLQSSTYATMAYREILKTSSDMS 583
>gi|345563700|gb|EGX46686.1| hypothetical protein AOL_s00097g590 [Arthrobotrys oligospora ATCC
24927]
Length = 752
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 200/516 (38%), Positives = 280/516 (54%), Gaps = 75/516 (14%)
Query: 22 ENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFK 81
E+W G+FL F+LYKENKDT E L L+ K L P+SF FAGTKD+R+V+ QRV+V K
Sbjct: 270 ESWDSLGGEFLHFNLYKENKDTMECLNLLGKFLRTSPKSFSFAGTKDRRAVTVQRVSVHK 329
Query: 82 QRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVV----DSEDVIKAS 137
+A K+ A+NK+L G++ GDF Y GL LG L GN FTI+LR V D VI+ S
Sbjct: 330 LKADKIEAINKKLKGLKAGDFEYKNYGLDLGDLTGNEFTISLRDCVFPEGSDMTKVIQES 389
Query: 138 ANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAV--KMILDPRE------GER 189
+SL G+INY+GLQRFG+ S+ TH +G ++L G+W++AV M D + ER
Sbjct: 390 VSSLREKGYINYYGLQRFGTFSISTHEIGKSMLLGDWRTAVYQAMAYDDQSLETAPPDER 449
Query: 190 NEISKAREYYKETDDID--GTLRKL-PRHLVAERAILQCLKK--CPGNYLQALKAIPRTL 244
+ R ++++T + RKL P V+E AIL L K +YL AL+ IPR L
Sbjct: 450 QRAAACRLWFEDTSSVSKAAEARKLMPGKFVSENAILSWLSKPNTVNDYLGALQKIPRNL 509
Query: 245 RMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSND 304
R+M+VH+YQS++WN S R++K+GT + GDLV ++ +P E E + +
Sbjct: 510 RLMFVHAYQSYVWNTIVSERLKKYGT-TIRAGDLVVISAEEAAASNPVADPH-EEEFAQE 567
Query: 305 ADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEV 364
A++ + P VT ++ SGK+TI DVVLP PG V YP ND+ ++
Sbjct: 568 ANEEKFVRARP--------------VTEEEVASGKFTIYDVVLPSPGWDVTYPQNDLRDL 613
Query: 365 YHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDL 424
Y + +DG++ + N KE S M G+YRR+ KP EWE+ Y D N L ETDL
Sbjct: 614 YADIMGQDGLDPFNMIRNQKELS---MAGHYRRLLYKPERVEWEIKRYEDPNDQLVETDL 670
Query: 425 DKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHV 484
+ + + G K K +LS D E + V P
Sbjct: 671 MYVQRQR-----------SGGKGK----------ALSTD--------EGLIHEAVNNP-- 699
Query: 485 ESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLK 520
G ++A+ + LTL +S YATMA+REL K
Sbjct: 700 --------TGSRIAVIVKLTLGTSQYATMALRELTK 727
>gi|393246231|gb|EJD53740.1| tRNA pseudouridine synthase D [Auricularia delicata TFB-10046 SS5]
Length = 771
Score = 307 bits (787), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 188/559 (33%), Positives = 277/559 (49%), Gaps = 100/559 (17%)
Query: 2 GRNSKK---RKERGDNPFDSRGSEN---WPEQLGKFLRFHLYKENKDTQEALGLISKMLG 55
G NS K R + G +D R N + ++ ++ F + K N+DTQ+A+ +++ML
Sbjct: 248 GANSNKIVMRWKHGQGRYDVRKKSNPGQYKPKMPPYVHFTMQKTNRDTQDAVSHLARMLK 307
Query: 56 ILPRSFGFAGTKDKRSVSTQRVTVFKQ-----------------RASKLAALNKRLIGIR 98
+ R FG AGTKDKR V+ QRV+V Q R+ + A + G+R
Sbjct: 308 LHVRDFGVAGTKDKRGVTVQRVSVKSQGRTLETLWKAANNVPGRRSVEEAVTMRGERGVR 367
Query: 99 LGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFGSG 158
+GDF Y GL LG L GN F ITLR V +SEDV+ + S+ GFINY+G+QRFG+
Sbjct: 368 VGDFAYADHGLELGMLKGNAFIITLRNVKAESEDVLNRAMESMKTKGFINYYGMQRFGTA 427
Query: 159 SVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVA 218
VPTH +G LL+ +WK AV +IL PR GE ++ R + + D+D L+ LPR +VA
Sbjct: 428 GVPTHSIGLALLQSDWKQAVSLILRPRPGEHPDVEAGRRAWLDDWDLDKALQLLPRRVVA 487
Query: 219 ERAILQCLKKCPG---NYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVV 275
ER IL+ KK N++ AL IPR LR MYVH+YQS++WN S R++++G + +
Sbjct: 488 ERCILENFKKQGRKGRNWMTALSTIPRNLRTMYVHAYQSYVWNAVVSERLRRYGADRAIP 547
Query: 276 GDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADI 335
GDLV+ P + DAD +D + P + +
Sbjct: 548 GDLVYAN-----------LPNNREDGDLDADMDVEVDAARDGPGPSKNFKPKAVIILTEE 596
Query: 336 NSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGI---NLTESLHNVKEFSITSMT 392
++ +YTI DV++PLPG V+YP D+ E+Y DG+ NLT N +E+S +
Sbjct: 597 SAHRYTIFDVIMPLPGRDVVYPAGDLGELYRQFLTMDGLDPDNLTRI--NNREYS---LL 651
Query: 393 GNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSD 452
G+YR++ Q P + W +L Y D
Sbjct: 652 GSYRKIVQLPQELSWSVLHYTD-------------------------------------- 673
Query: 453 CMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYAT 512
D+ L+ + +A ++ AD GK +AL++ LTL ++ YAT
Sbjct: 674 ---------PDVSLAQSDEDAQLGLDIP--------AADPDGKFVALQIRLTLTTAAYAT 716
Query: 513 MAIRELLKTSTSVAFHKTL 531
MA+RE+ KT TS + L
Sbjct: 717 MALREVTKTETSSHYQSQL 735
>gi|66824449|ref|XP_645579.1| tRNA pseudouridine synthase D [Dictyostelium discoideum AX4]
gi|60473740|gb|EAL71680.1| tRNA pseudouridine synthase D [Dictyostelium discoideum AX4]
Length = 729
Score = 305 bits (780), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 181/509 (35%), Positives = 273/509 (53%), Gaps = 65/509 (12%)
Query: 22 ENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFK 81
+ WP K++ F L KEN+DT + L ++S++L ++F FAGTKDKR ++TQRVTV+K
Sbjct: 223 QQWPIGKPKYVEFKLCKENRDTMDTLSMMSRILRNSEKNFSFAGTKDKRGITTQRVTVWK 282
Query: 82 QRASKLAALNKRLIG----IRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKAS 137
KL LN R+ +R+G++ +V+ L LG L GNRF+I +R + + +I S
Sbjct: 283 VTPEKLVELNNRISTLSPPVRIGEYRFVENHLRLGDLSGNRFSIVIREIQGADDQLITES 342
Query: 138 ANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKARE 197
+ + GFINYFG+QRFG+G++PT+ +G +++G W+ A K+ILDPR+GER++ +KAR
Sbjct: 343 IETFKKTGFINYFGMQRFGTGAIPTYEIGIAMIQGNWEKAAKLILDPRDGERDDATKARL 402
Query: 198 YYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLW 257
YYKET DI TL LPR L AER +L LK +Y A +IPRTLRM+Y HSYQS +W
Sbjct: 403 YYKETGDIKKTLTMLPRGLNAERKLLLGLKNGQSSYQDAFYSIPRTLRMLYTHSYQSLIW 462
Query: 258 NHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPET 317
N A+ R++ G +VGDLV + + + N E +++N+++D ET
Sbjct: 463 NLMATKRIELFGFNKPIVGDLVIISEESIDNK---KNEEESKDNNNNSNDGEEEIGGDET 519
Query: 318 DHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLT 377
+ + + V VT D+ + +YTI VVLPL G I P N + E+Y K I +
Sbjct: 520 EIEEKKVIKVDYVTEDDVKNDRYTIQQVVLPLIGGSTILPKNIIGELYVEELAKSNIQPS 579
Query: 378 ESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVK 437
+ + + + G YR++ + D +++ Y D PLA +D+
Sbjct: 580 QFISKNRAI---DLRGGYRKLLETAKDTTYKIFNYDDFTIPLALSDI------------- 623
Query: 438 EEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQM 497
E + G++E P D GK
Sbjct: 624 --EILKGSQE--PVDV--------------------------------------PNGKHK 641
Query: 498 ALKLGLTLPSSCYATMAIRELLKTSTSVA 526
A+++ LPSS YATMA RE+LK+S+ +
Sbjct: 642 AVRVCFNLPSSTYATMAYREILKSSSDMT 670
>gi|156352534|ref|XP_001622803.1| hypothetical protein NEMVEDRAFT_v1g139787 [Nematostella vectensis]
gi|156209422|gb|EDO30703.1| predicted protein [Nematostella vectensis]
Length = 545
Score = 304 bits (778), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 189/520 (36%), Positives = 261/520 (50%), Gaps = 103/520 (19%)
Query: 14 NPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVS 73
NP R + WP +F L+KENKDT EA+ L++K+L + P FG+AGTKD+R V+
Sbjct: 128 NPSRKR-PDRWPAGRPDHCKFVLFKENKDTMEAISLLAKLLHVKPGVFGYAGTKDRRGVT 186
Query: 74 TQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDV 133
Q V+ +K A +L LN L G+RLG+F Y KE L LG L GN F ITLR V + E V
Sbjct: 187 VQEVSGYKVLAERLQGLNNTLRGLRLGNFEYCKEKLRLGDLSGNHFVITLRNVSGNCE-V 245
Query: 134 IKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEIS 193
I+ + SL GFINYFGLQRFG+ VPTH +G L+ +W AV +IL+PREG+ + +
Sbjct: 246 IERAMTSLKDVGFINYFGLQRFGTSCVPTHHIGRALILSQWSEAVDLILNPREGKPKDFN 305
Query: 194 KAREYYKETDDIDGTLRKLPRHLVAERAILQ-CLKKCPGNYLQALKAIPRTLRMMYVHSY 252
KA EY+K T D G L +L R E +LQ + + + + AL+ IPR R+MYVH+Y
Sbjct: 306 KALEYWKSTGDAKGALSRLARKKCIESYLLQGFVNQGSQDLVGALQMIPRNTRLMYVHAY 365
Query: 253 QSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLD 312
QS++WN+ S R++++G V GDLV
Sbjct: 366 QSYIWNNMVSHRIREYGLVP-VEGDLVVSG------------------------------ 394
Query: 313 EVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKD 372
H V+T++ DI+S KY+I DVV+P+PG V YP DV + Y L D
Sbjct: 395 -----------HTQVRTLSHDDISSQKYSIHDVVMPVPGYDVTYPGKDVRDWYRELMAVD 443
Query: 373 GINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKL 432
G+++ + H VK++ S++G YR + KP W+ + Y D PLA TDLD++
Sbjct: 444 GVDIDKMRHRVKDY---SLSGAYRPIIIKPQHTSWKFIHYNDVTAPLALTDLDRLEG--- 497
Query: 433 VNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADS 492
DI T+ A E+ P
Sbjct: 498 ----------------------------RTDIPAETDGQYLALQIELTLP---------- 519
Query: 493 QGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
SSCYATMA+RE+L+ TS A +N
Sbjct: 520 --------------SSCYATMALREVLRKDTSPATQAAMN 545
>gi|170027628|ref|XP_001841699.1| tRNA pseudouridine synthase D [Culex quinquefasciatus]
gi|167862269|gb|EDS25652.1| tRNA pseudouridine synthase D [Culex quinquefasciatus]
Length = 728
Score = 304 bits (778), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 190/523 (36%), Positives = 278/523 (53%), Gaps = 74/523 (14%)
Query: 17 DSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQR 76
D R WPE+ F F LYKEN DT +A ++++ L P +F +AGTKD+R+ +TQ
Sbjct: 212 DRREKWLWPEE---FTHFMLYKENIDTIQATTMLTENLRCSPSAFAYAGTKDRRAKTTQW 268
Query: 77 VTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKA 136
V++ ++A+ +L I++G+FC+ L LGQL GNRF I LR V SEDV+++
Sbjct: 269 VSIRHGDPVRIASAAAKLRNIKIGNFCFKPAQLKLGQLRGNRFRIVLRQVTA-SEDVLRS 327
Query: 137 SANSLGRNGFINYFGLQRFGS-GSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKA 195
S S GFINYFGLQRFG+ S+PT+ VG +L+ EWK A +IL PREG+ + +
Sbjct: 328 SLESFREKGFINYFGLQRFGNCASIPTYKVGIEILKSEWKEACDLILKPREGDVWFMQQV 387
Query: 196 REYYKETDDIDGTLRK-LPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQS 254
RE +++T D K + E+ IL+ L ++ AL+ +PR +R++Y HSYQS
Sbjct: 388 REIWQKTGDAQAAFEKFFYSNKSIEKTILKWLASHENDFRGALEHLPRNMRLLYSHSYQS 447
Query: 255 FLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEV 314
+WN AS ++ G +V GDLVF D EL + P + E++ + +++ ++
Sbjct: 448 VIWNRVASRGIRNLGY-RLVPGDLVFL---DKFAELVDLEPVLDVEAALEQNETVQQEDK 503
Query: 315 PETDH----PDGRH--NLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHL 368
ETD P+ H +LVK +T ADI SG YTI D+VLPLPG + YP N+ A Y L
Sbjct: 504 EETDQSEQSPELSHFKSLVKPLTEADIESGSYTIFDIVLPLPGHDIAYPANECATWYEEL 563
Query: 369 AEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIA 428
DG++ +E L ++ + S+TG YR+VF KP + +W+L+ Y + N L +DL+K+
Sbjct: 564 LAADGLS-SEKLK--QKTKMHSLTGAYRKVFIKPENLDWKLVPYENPNGALILSDLEKL- 619
Query: 429 KAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVC 488
NN + PH
Sbjct: 620 -----------------------------------------NNVPEPTQPENAPH----- 633
Query: 489 GADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTL 531
AL L LPSS YATMA+RE+LK TS + ++L
Sbjct: 634 --------KALLLDFRLPSSAYATMALREILKVDTSALYQRSL 668
>gi|401623476|gb|EJS41573.1| pus7p [Saccharomyces arboricola H-6]
Length = 677
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 190/536 (35%), Positives = 283/536 (52%), Gaps = 85/536 (15%)
Query: 8 RKERGDNPFDSRGSENWPEQLGK-FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGT 66
++E+ + DS G ENW K F+ F L+KENKDT EA+ +I+K+L + R +AGT
Sbjct: 196 KQEKINQTKDSNGVENWGYGPSKDFIHFALHKENKDTMEAVNVITKLLRVPSRVIRYAGT 255
Query: 67 KDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGV 126
KD+R+V+ QR+++ K +L ALN+ L G+ +G++ + L LG L GN F + +R V
Sbjct: 256 KDRRAVTCQRLSISKIGLDRLNALNRTLKGMIIGNYSFSDASLNLGDLKGNEFVVVIRDV 315
Query: 127 VVDS-----EDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMI 181
VD+ ED++ SL NGF+NYFG+QRFG+ S+ TH +G LL W+ A ++I
Sbjct: 316 SVDNNKTSLEDIVSNGCKSLSENGFVNYFGMQRFGTFSISTHTIGRELLLSNWEEAAELI 375
Query: 182 LDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKK---------CPGN 232
L +E + +AR+ + ET D L+++PR +AE A+L L
Sbjct: 376 LSDQENVLPKSKEARKIWAETKDASLALKQMPRQCLAENALLYSLSNQRKEDDGTYSANA 435
Query: 233 YLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGC 292
Y A+ IPR LR MYVH+YQS++WN AS RV+ HG + +VVGDLV DTEK +
Sbjct: 436 YYTAIMKIPRNLRTMYVHAYQSYVWNSIASKRVELHGLK-LVVGDLVIA---DTEKPV-- 489
Query: 293 VNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGS 352
SN D DE D + + K VT DI+SGKY+++DVVLP PG
Sbjct: 490 ---------SNSGIDDEDFDE----DVREAQFVRAKAVTQDDIDSGKYSMEDVVLPSPGF 536
Query: 353 RVIYPMN-DVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLT 411
V+YP N ++ ++Y + + D ++ + V++F S+ G+YR V QKP E++++
Sbjct: 537 DVLYPSNEELKQLYVDILKADNMDPFDMRRKVRDF---SLAGSYRNVVQKPKSLEYKIIH 593
Query: 412 YIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENN 471
Y D ++ +A TDLD + K
Sbjct: 594 YDDPSQQIANTDLDILNNTK---------------------------------------- 613
Query: 472 EAACAKEVKQPHVESVCG---ADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTS 524
AKE Q ++++ D G + A+ L L +S YATMA+REL+K TS
Sbjct: 614 ----AKESGQKYMKAKLDRYMPDKGGDKTAVVLKFQLGTSAYATMALRELMKLETS 665
>gi|294462602|gb|ADE76847.1| unknown [Picea sitchensis]
Length = 311
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 165/321 (51%), Positives = 220/321 (68%), Gaps = 25/321 (7%)
Query: 225 CLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGD 284
CLKK PGNYLQA+ +I RTLRMMYVHSYQS+LWNHAASARVQK+G E +V GDLV+CKG
Sbjct: 2 CLKKNPGNYLQAICSISRTLRMMYVHSYQSYLWNHAASARVQKYGVEKIVEGDLVYCKGT 61
Query: 285 DTEKELGCVNPEFEYESSNDADDSSH------LDEVPETDHPDGRHNLVKTVTAADINSG 338
+ +K+ +P +S N+A+D LDE E+D + K A DI SG
Sbjct: 62 EVDKQ----SPR--EQSRNEANDGDAGYEFDVLDEASESDFSQESLKVAKIANADDIASG 115
Query: 339 KYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRV 398
KYTIDD++LPLPGSR+IYP ND+AE YH LA KD ++L +S HNVKEFSI ++ G YRR+
Sbjct: 116 KYTIDDILLPLPGSRIIYPGNDIAETYHDLALKDLVDLRDSSHNVKEFSIINIPGAYRRL 175
Query: 399 FQKPMDFEWELLTYIDGNKPLAETDLDKIAKA-KLVNIVKEEEAVCGNKEKDPSDCMKQS 457
QKP+DF WE++ Y D +PL ETDLD IAK+ L N +K++ + ++ P D K S
Sbjct: 176 IQKPIDFIWEIVKYEDPTQPLVETDLDNIAKSNNLDNQIKQKSS-----DESPGDHEKPS 230
Query: 458 ESLSKDIKLSTENNEAACAKEVKQPHVES-VCGADSQGKQ-----MALKLGLTLPSSCYA 511
+++ + +L+ E+ + + AK+ + +++S + A+S + AL + TLP+SCYA
Sbjct: 231 TTVNSE-QLAHEDKQNSVAKDSDELNIKSDLKEANSAIRSASASFTALLMSFTLPTSCYA 289
Query: 512 TMAIRELLKTSTSVAFHKTLN 532
TMAIRELLKTSTS AFHK LN
Sbjct: 290 TMAIRELLKTSTSTAFHKNLN 310
>gi|302756367|ref|XP_002961607.1| hypothetical protein SELMODRAFT_403647 [Selaginella moellendorffii]
gi|300170266|gb|EFJ36867.1| hypothetical protein SELMODRAFT_403647 [Selaginella moellendorffii]
Length = 580
Score = 301 bits (771), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 194/542 (35%), Positives = 263/542 (48%), Gaps = 148/542 (27%)
Query: 2 GRNSKKRKERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSF 61
G SK++++ D FD R WP KF +LYKENK TQ AL ++++ +G+ ++
Sbjct: 167 GHESKRQRQDSDK-FDRRAGNYWPADRHKF---YLYKENKTTQSALMIVAQKIGVKAKNM 222
Query: 62 GFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTI 121
GFAGTKDKR+V+TQR GL LG+L GNRF++
Sbjct: 223 GFAGTKDKRAVTTQR-------------------------------GLALGELSGNRFSV 251
Query: 122 TLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMI 181
LR VV +SE+ IK +A +G +GFINY+GLQRFGS VPTH +GA E +
Sbjct: 252 ILRDVVAESENAIKEAAEGMGNSGFINYYGLQRFGSCGVPTHAIGAKQQAAEESRKIFKT 311
Query: 182 LDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIP 241
P E L+ +P H++AERAIL LKK P NYLQA++ IP
Sbjct: 312 AGPAEA---------------------LKLMPHHMIAERAILLSLKKDPANYLQAIQNIP 350
Query: 242 RTLRMMYVHSYQSFLWNHAASARVQKH---------------GTEHVVVGDLVFCKGDDT 286
R +RMMYVHSYQS+LWN AASAR+QK+ G + VV GDLV+C+ D+
Sbjct: 351 RPMRMMYVHSYQSYLWNSAASARIQKYGNPSFSNGVKDVVFTGVDAVVEGDLVYCQEDEI 410
Query: 287 EKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVV 346
KE G + + E D + D E P + K +
Sbjct: 411 SKEAGRDDVDLEDLVDTDVLED---DACMELARPSRK---------------KVKVTRHG 452
Query: 347 LPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFE 406
P P NDVA VYH + + + I+L HNVKEFS+ +TG Y + KP+DFE
Sbjct: 453 PP--------PSNDVANVYHKIMKMESIDLKSCTHNVKEFSVEYLTGAYLNLLVKPIDFE 504
Query: 407 WELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKL 466
W L +Y D PL +TD+D + DPS + + ++ S
Sbjct: 505 WRLSSYSDSRNPLTKTDMDLL--------------------HDPSTSVPEEDANS----- 539
Query: 467 STENNEAACAKEVKQPHVESVCGADSQGKQ-MALKLGLTLPSSCYATMAIRELLKTSTSV 525
+QG +AL+L TLP+S YATMAIR+++K STSV
Sbjct: 540 -------------------------TQGPSLLALQLQFTLPTSAYATMAIRKVMKMSTSV 574
Query: 526 AF 527
+
Sbjct: 575 SL 576
>gi|145350681|ref|XP_001419728.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579960|gb|ABO98021.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 652
Score = 300 bits (769), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 188/518 (36%), Positives = 276/518 (53%), Gaps = 85/518 (16%)
Query: 16 FDSRGSEN-WPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVST 74
D R N WPE + + +RF KENK++ E L +I++ L + +S G AGTKDKR V+T
Sbjct: 203 MDHRAVGNFWPEGVPEHVRFAFCKENKESYEMLNVIARALKVNFKSIGVAGTKDKRGVTT 262
Query: 75 QRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVI 134
Q VTV + RA +LA L L G ++G++ YV L G GN F ITLRG+ D +
Sbjct: 263 QHVTVHRVRAKRLAKLV--LYGCKIGNYTYVDRQLGFGDHCGNEFEITLRGIDPDVVGNV 320
Query: 135 KASANSLGRNGFINYFGLQRFGS--GSVPTHLVGATLLRGEWKSAVKMILDPREGERNEI 192
+ + +L +G INY+GLQRFGS G TH +G LLRGEW++A+ +L PREGER+++
Sbjct: 321 EEAVRALKSSGTINYYGLQRFGSAGGKHATHKIGIELLRGEWQAAIDALLLPREGERDDV 380
Query: 193 SKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKC-PGNYLQALKAIPRTLRMMYVHS 251
KAR + ET D + TL+ +PR AER +L+ + K + + +L A+P+ +R+MY+H+
Sbjct: 381 MKARLKWMETKDPNETLKLMPRWCAAERCVLERMSKVRSTDLVGSLLAVPKQIRLMYIHA 440
Query: 252 YQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHL 311
YQ++L+N S R++K+G VV GDLV +G+ C E E + + D S
Sbjct: 441 YQAYLFNRVVSERIRKYGVNTVVEGDLVLEEGN-------CAGDEGEDDMNGDTRVS--- 490
Query: 312 DEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEK 371
+P V+ VTA + G VVLPLPG+ + YP N + +VY A +
Sbjct: 491 --MPR----------VRVVTAEEAALGAIDSSLVVLPLPGNSITYPTN-LGDVYDRFAAE 537
Query: 372 DGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAK 431
DGI+L + H+V+EF+I S TG+YRR F KP + +++Y D A DL
Sbjct: 538 DGISLNTTTHSVREFAINSFTGDYRRCFLKPTNVSHTVISYAD-----AAADL------- 585
Query: 432 LVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGAD 491
++ + + + G E+ D
Sbjct: 586 ---VLTDLDRINGITERTIED--------------------------------------- 603
Query: 492 SQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHK 529
G A+ + TLP S YATM +REL+K +TSV+ HK
Sbjct: 604 --GPLRAVTVKFTLPPSSYATMVLRELMKANTSVSSHK 639
>gi|328771420|gb|EGF81460.1| hypothetical protein BATDEDRAFT_23902 [Batrachochytrium
dendrobatidis JAM81]
Length = 699
Score = 300 bits (769), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 185/527 (35%), Positives = 270/527 (51%), Gaps = 86/527 (16%)
Query: 9 KERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKD 68
K+R P S+ N + G + F LYKEN DT +A+ ISK + + + F F+GTKD
Sbjct: 247 KKRPSKPVSSKVDFN--DLGGNYCHFTLYKENIDTMQAIAKISKSIRVPSKQFTFSGTKD 304
Query: 69 KRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVV 128
KR+++TQR++V R S L +NK L R+GD Y L+LG L GN F+I LR V
Sbjct: 305 KRAITTQRISVLNVRPSVLLGVNKLLGTSRIGDLSYHNTRLMLGSLSGNHFSIVLRNVEA 364
Query: 129 DSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGE 188
S+ VI S S +NGFINY+G+QRFG+ SV TH VG LL +W+ A+ +I+ P+ +
Sbjct: 365 QSDQVIHQSMQSFKQNGFINYYGMQRFGTRSVSTHSVGIALLAEKWEQAIDLIMCPKAED 424
Query: 189 RNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCL--KKCPGNYLQALKAIPRTLRM 246
++ +AR ++K+T D + + +AER IL KC YL A++AIPR LR+
Sbjct: 425 SADVLQARLFWKQTQDAEKAVELFHARNLAERCILFSFVNSKCNTAYLSAVQAIPRNLRL 484
Query: 247 MYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDAD 306
MYVH+YQS++WNH A+ R++ +G + VVGDLV E L
Sbjct: 485 MYVHAYQSYVWNHMATERIKLYGLKP-VVGDLVIPNKATVEPRL---------------- 527
Query: 307 DSSHLDEVPETDHPD-GRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVY 365
+++H+++ PD R + A+ ++ YT+ DVVLP PG V+YP + VA+ Y
Sbjct: 528 NTTHVND------PDIARDTIQPIYIASKDDAANYTMQDVVLPQPGHCVVYPKHKVAQKY 581
Query: 366 HHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLD 425
DG + N+ +F S++G YR+V + W +L Y D N PL +TDLD
Sbjct: 582 IEFMAVDGFDPYNMKRNIADF---SLSGAYRKVISVATNVNWHILKYNDANVPLVQTDLD 638
Query: 426 KIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVE 485
+VN + P +
Sbjct: 639 ------IVN---------------------------------------------QTPKPQ 647
Query: 486 SVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
SV GK +L + TL SS YATMA+RE++K+ T+ FH L+
Sbjct: 648 SV----PDGKYTSLVVEFTLGSSQYATMALREVMKSETNSGFHTRLS 690
>gi|413949793|gb|AFW82442.1| hypothetical protein ZEAMMB73_396305 [Zea mays]
gi|413949794|gb|AFW82443.1| hypothetical protein ZEAMMB73_396305 [Zea mays]
gi|413949795|gb|AFW82444.1| hypothetical protein ZEAMMB73_396305 [Zea mays]
Length = 361
Score = 300 bits (767), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 138/177 (77%), Positives = 158/177 (89%)
Query: 11 RGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKR 70
R PFDSRGS NWP+ +GKFLRFHLYKENKDTQEALG+I KMLG+ PRSFGFAGTKDKR
Sbjct: 184 RDGRPFDSRGSSNWPDNVGKFLRFHLYKENKDTQEALGVIGKMLGLQPRSFGFAGTKDKR 243
Query: 71 SVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDS 130
+V+TQ+VTVFK +ASKL ALNKRL GI++G+FCYVKEGL+LGQL GNRFTITLRGV +S
Sbjct: 244 AVTTQQVTVFKVQASKLLALNKRLFGIKVGNFCYVKEGLVLGQLTGNRFTITLRGVTAES 303
Query: 131 EDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG 187
ED+IK + + LG+NGFINY+GLQRFGSGS+PTHLVGA LLRGEWK AV +ILDPREG
Sbjct: 304 EDMIKIAVDGLGKNGFINYYGLQRFGSGSIPTHLVGAALLRGEWKVAVNLILDPREG 360
>gi|403216815|emb|CCK71311.1| hypothetical protein KNAG_0G02550 [Kazachstania naganishii CBS
8797]
Length = 688
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 197/545 (36%), Positives = 279/545 (51%), Gaps = 83/545 (15%)
Query: 1 MGRNSKK----RKERGDNPFDSRGSENWPEQLGK-FLRFHLYKENKDTQEALGLISKMLG 55
+ RNS+ +KE + D+ G ENW K FL F LYKENKDT +A+ I K+L
Sbjct: 179 IARNSQNSRVNKKELIELTKDANGVENWGYGPNKEFLHFTLYKENKDTMDAVNTICKLLR 238
Query: 56 ILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLL 115
R +AGTKD+R+V+ QR+++ K ++ ALN+ L G+ +G F Y L LG L
Sbjct: 239 TPTRMMRYAGTKDRRAVTCQRLSISKFGVDRINALNRTLKGMTVGGFSYKDTTLSLGDLS 298
Query: 116 GNRFTITLRGVVVDSE------DVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATL 169
GN F I +R V V ++++ SL GFINYFGLQRFG+ S+ TH VG L
Sbjct: 299 GNEFVIVVRDVKVQENSDTSLNNIMEKGCQSLTEKGFINYFGLQRFGTFSISTHAVGKEL 358
Query: 170 LRGEWKSAVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKK- 228
L G W+ A ++IL +E + +AR+ + +T D L+ +PR +AE A+L CL
Sbjct: 359 LLGNWEVAAELILSDQESVLQKSKEARQIWAQTKDAHAALKLMPRQCIAENAVLFCLSNQ 418
Query: 229 --------CPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVF 280
P Y A+ IPR LR MYVH+YQS++WN AS R++ HG + V+VGDLV
Sbjct: 419 RKEDNGTYSPNAYYNAIMKIPRNLRTMYVHAYQSYIWNSVASKRIEMHGLD-VIVGDLVV 477
Query: 281 CKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKY 340
D+ KE S +E + D D K ++ ADI+SGKY
Sbjct: 478 DDSVDSVKE------------------SIDEEEDLDEDLRDATFIRAKALSQADIDSGKY 519
Query: 341 TIDDVVLPLPGSRVIYPMN-DVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVF 399
+I DVVLP PG +IYP N +++++Y KDG++ + V++F SM G+YR V
Sbjct: 520 SITDVVLPTPGFDIIYPSNKELSDLYVTTMAKDGMDPADMRRKVRDF---SMAGSYRNVI 576
Query: 400 QKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSES 459
QKP + E++++ Y D + L TDL+ + N
Sbjct: 577 QKPKELEYKIVHYDDPTQQLVNTDLE----------------ILNN-------------- 606
Query: 460 LSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELL 519
K+ EN C K +K +E GK A+ L L +S YATM +REL+
Sbjct: 607 -----KIGQEN----CQKYMK-VKLERYMPDKPDGKMTAVILKFQLDTSSYATMLLRELM 656
Query: 520 KTSTS 524
K TS
Sbjct: 657 KLETS 661
>gi|328771105|gb|EGF81145.1| hypothetical protein BATDEDRAFT_87819 [Batrachochytrium
dendrobatidis JAM81]
Length = 699
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 184/527 (34%), Positives = 270/527 (51%), Gaps = 86/527 (16%)
Query: 9 KERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKD 68
K+R P S+ N + G + F LYKEN DT +A+ ISK + + + F F+GTKD
Sbjct: 247 KKRPSKPVSSKVDFN--DLGGNYCHFTLYKENIDTMQAIAKISKSIRVPSKQFTFSGTKD 304
Query: 69 KRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVV 128
KR+++TQR++V R S L +NK L R+GD Y L+LG L GN F+I LR V
Sbjct: 305 KRAITTQRISVLNVRPSVLLGVNKLLGTSRIGDLSYHNTRLMLGSLSGNHFSIVLRNVEA 364
Query: 129 DSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGE 188
S+ VI S S +NGFINY+G+QRFG+ SV TH VG LL +W+ A+ +I+ P+ +
Sbjct: 365 QSDQVIHQSMQSFKQNGFINYYGMQRFGTRSVSTHSVGIALLAEKWEQAIDLIMCPKAED 424
Query: 189 RNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCL--KKCPGNYLQALKAIPRTLRM 246
++ +AR ++K+T D + + +AER IL KC YL A++AIPR LR+
Sbjct: 425 SADVLQARLFWKQTQDAEKAVELFHARNLAERCILFSFVNSKCNTAYLSAVQAIPRNLRL 484
Query: 247 MYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDAD 306
MYVH+YQS++WNH A+ R++ +G + VVGDLV E L
Sbjct: 485 MYVHAYQSYVWNHMATERIKLYGLKP-VVGDLVIPNKATVEPRL---------------- 527
Query: 307 DSSHLDEVPETDHPD-GRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVY 365
+++H+++ PD R + ++ ++ YT+ DVVLP PG V+YP + VA+ Y
Sbjct: 528 NTTHVND------PDIARDTIQPIYITSEDDAANYTMQDVVLPQPGHCVVYPKHKVAQKY 581
Query: 366 HHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLD 425
DG + N+ +F S++G YR+V + W +L Y D N PL +TDLD
Sbjct: 582 IEFMAVDGFDPYNMKRNIADF---SLSGAYRKVISVATNVNWHILKYNDANVPLVQTDLD 638
Query: 426 KIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVE 485
+VN + P +
Sbjct: 639 ------IVN---------------------------------------------QTPKPQ 647
Query: 486 SVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
SV GK +L + TL SS YATMA+RE++K+ T+ FH L+
Sbjct: 648 SV----PDGKYTSLVVEFTLGSSQYATMALREVMKSETNSGFHTRLS 690
>gi|334348436|ref|XP_001371795.2| PREDICTED: pseudouridylate synthase 7 homolog [Monodelphis
domestica]
Length = 668
Score = 297 bits (760), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 180/512 (35%), Positives = 262/512 (51%), Gaps = 106/512 (20%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+WP G + F LYKENKDT +A+ ++SK L + P F + GTKDKR+++ Q + V K
Sbjct: 256 SWPRSRGSYCHFVLYKENKDTMDAINVLSKFLRVKPNIFSYMGTKDKRAITVQEIAVLKI 315
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
A +LA LNK L+ +LG+F Y K L LG+L GN FT+ LR + ++ ++ + NSL
Sbjct: 316 TAQRLAHLNKCLMNFKLGNFSYQKNPLKLGELQGNHFTVVLRN-ITGTDHQVQQAMNSLK 374
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKE 201
GFINY+G+QRFG+ +VPT+ VG +L+ W V +IL PR G E+ + K RE + +
Sbjct: 375 EIGFINYYGMQRFGTTAVPTYQVGRAILQNCWDEVVDLILKPRPGAEKGYLVKCREEWAK 434
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKKCP-GNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
T D D L+KLP E +L+ L K N + A IPR R+MY+HSYQS++WN+
Sbjct: 435 TKDPDAALKKLPVKRCVEGQLLRGLSKYGLKNIVSAFGIIPRNNRLMYIHSYQSYVWNNM 494
Query: 261 ASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHP 320
S R++++G + V GDLV KG ++H++E
Sbjct: 495 VSKRIEEYGLKP-VQGDLVL-KG----------------------ATATHIEE------- 523
Query: 321 DGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESL 380
AD+NS Y+I DVV+PLPG VIYP + ++E Y + D +N+
Sbjct: 524 ------------ADVNS--YSIHDVVMPLPGFDVIYPKHKISEAYKEMLTADCLNIDNMR 569
Query: 381 HNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEE 440
H ++++ S++G YR++ +P + WE+++Y D PL TDLD +
Sbjct: 570 HKIRDY---SLSGAYRKIIIRPQNVSWEVVSYDDPRIPLFNTDLDNL------------- 613
Query: 441 AVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALK 500
E K P V + G K ALK
Sbjct: 614 -------------------------------------EGKPPPVFATEG-----KYRALK 631
Query: 501 LGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
+ +LP S YATMAIRE+LK TS+ LN
Sbjct: 632 MDFSLPPSTYATMAIREVLKMDTSIKNQTQLN 663
>gi|428175999|gb|EKX44886.1| hypothetical protein GUITHDRAFT_139492 [Guillardia theta CCMP2712]
Length = 633
Score = 296 bits (759), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 166/404 (41%), Positives = 240/404 (59%), Gaps = 17/404 (4%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
KF++F LYKEN DT A+ +ISKM+ +F +AGTKD+R+ +TQ V+ + L
Sbjct: 175 AKFIKFVLYKENLDTMAAVSIISKMVKTKGGTFSYAGTKDRRACTTQLVSAHRVDPFVLT 234
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
LNKRL I +G+ ++ L LGQL GNRF I LR V SE I+A NSL GFIN
Sbjct: 235 DLNKRLRNICIGNLSVCEQTLKLGQLYGNRFQIILRDVQA-SEGSIEALCNSLKEKGFIN 293
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDDIDGT 208
YFG QRFG+ S+PT+ +G +L +W+ A +IL PR+GE+ E ARE +KE D
Sbjct: 294 YFGKQRFGTSSIPTYSIGREILHEDWEKAADLILCPRDGEKEESKTAREKFKEHKDPAKA 353
Query: 209 LRKLPRHLVAERAILQCLKKCPGN-YLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQK 267
L + PR + AER +L KK N +L AL+A+PR LR+MY+HSYQS++WN S R++
Sbjct: 354 LEEFPRWMFAERTLLDVYKKRGMNSHLNALQALPRNLRLMYIHSYQSYIWNKMVSERLRM 413
Query: 268 HGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDS-SHLDEVPETDH---PDGR 323
+G + V GDLV D + L F+ E +++ S ++ E E+DH
Sbjct: 414 YGKDRPVEGDLVLESKDVESESL------FDLEGVDESTLSGANASEEQESDHDKWTKSH 467
Query: 324 HNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNV 383
VK + A+D++ KY+I DVVLPLPG + YP N++ + Y + DG+++ +
Sbjct: 468 PKKVKVLAASDVD--KYSIFDVVLPLPGVSISYPTNEIGKKYEEALKADGLDINNLANKN 525
Query: 384 KEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKI 427
KEF +++G+YR++ + DF WE + Y + L TDL+KI
Sbjct: 526 KEF---TLSGDYRKILSQAEDFSWETIDYKNPKGDLQATDLEKI 566
>gi|390601024|gb|EIN10418.1| tRNA pseudouridine synthase D [Punctularia strigosozonata HHB-11173
SS5]
Length = 783
Score = 294 bits (752), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 189/537 (35%), Positives = 268/537 (49%), Gaps = 98/537 (18%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVT----------VF 80
++ F L K N+DTQ+ALG IS+ + + AGTKDKR V+ QRV+ V+
Sbjct: 285 YIHFTLQKTNRDTQDALGHISRSIHCDVKDLAVAGTKDKRGVTVQRVSLKRYNKTVEDVW 344
Query: 81 KQ--------RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSED 132
K R + A + GIR+ DF Y + GL LG L GN F ITLR V VDS D
Sbjct: 345 KNMNGITARGRTIEEATTQRGERGIRISDFNYRRAGLELGMLKGNAFVITLRNVQVDSLD 404
Query: 133 VIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEI 192
I + ++ GFINY+G+QRFG+ S+PTH +G LL+ +W A+ +IL R GE ++
Sbjct: 405 TINRAMETMKTKGFINYYGMQRFGTASIPTHSIGLALLKSDWHRAISLILRHRPGEHPDV 464
Query: 193 SKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPG---NYLQALKAIPRTLRMMYV 249
AR + D+D L +PR +VAER IL+ KK G N + AL IPR LR+MY+
Sbjct: 465 EAARSAWLNDGDLDTALALMPRRVVAERCILESYKKQKGDTRNAMGALSTIPRNLRLMYI 524
Query: 250 HSYQSFLWNHAASARVQKHGTEHVVVGDLVFCK-------GDDTEKELGCVNPEFEYESS 302
H+YQS++WN S R++ +G V GDLVF K D+TE V+P E+
Sbjct: 525 HAYQSYVWNAIVSERIKMYGANRPVAGDLVFEKIKDKEPENDETEDTDMAVDP---TEAD 581
Query: 303 NDADDSSHLDEVPETDHPDGRHNL-------VKTVTAADINSGKYTIDDVVLPLPGSRVI 355
AD + + E+ G+ N VKT+T D++ +YTI DVV+PLPG V
Sbjct: 582 LSADGKALPEAADESQSKAGKRNRKRWEPPKVKTLTEEDLD--QYTIFDVVMPLPGRDVA 639
Query: 356 YPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDG 415
YP + E Y L DG++ + KE+S + G+YR + P + W +L Y D
Sbjct: 640 YPGGALGERYQELIRADGLDPHDWSRKQKEYS---LGGSYRNIVHLPKELSWSVLRYTDP 696
Query: 416 NKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAAC 475
+ PLA+ +E+ + G
Sbjct: 697 DVPLAQA---------------DEDKLLG------------------------------- 710
Query: 476 AKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
+ P +E G+ +AL++ LTL ++ YATMA+RE+ KT TS F TL
Sbjct: 711 ---FEPPVIEE------DGRFLALQVRLTLGTAAYATMALREVTKTETSSHFQTTLT 758
>gi|170015989|ref|NP_001116170.1| pseudouridylate synthase 7 homolog [Danio rerio]
gi|169642680|gb|AAI60612.1| Pus7 protein [Danio rerio]
Length = 627
Score = 294 bits (752), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 183/512 (35%), Positives = 249/512 (48%), Gaps = 106/512 (20%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+WP+ G F F LYKENKDT EA+ ++S+ L + P F + GTKDKR++S Q + V K
Sbjct: 215 SWPKNRGSFCHFVLYKENKDTMEAINILSRFLRVRPNMFSYMGTKDKRAISVQEIAVLKI 274
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
A +L+ LNK L+ ++LG+FCY K L LG+L GN FT+ LR + S+ + + NSL
Sbjct: 275 SAERLSHLNKCLMNLKLGNFCYKKHPLKLGELQGNHFTVVLRN-ISGSQQQVDQAMNSLQ 333
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKE 201
GFINY+G+QRFG+ +VPTH VG +L+ WK V +IL PR G E+ + K RE +
Sbjct: 334 NTGFINYYGMQRFGTTAVPTHRVGRAILQNNWKEVVDLILKPRPGAEKGYLVKCREEWAR 393
Query: 202 TDDIDGTLRKLPRHLVAERAILQCL-KKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
T D LRKLP E +L+ L K N + A IPR R+MY+HSYQS++WN
Sbjct: 394 TQDPAAALRKLPVKRCVEGQLLRGLAKHGKHNIITAFALIPRNNRLMYIHSYQSYVWNSM 453
Query: 261 ASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHP 320
S RV +G V GDL+ G S+H
Sbjct: 454 VSRRVDAYGLR-AVEGDLILRGG------------------------SAH---------- 478
Query: 321 DGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESL 380
V +AD + K++I DVV+PLPG VIYP + V + Y + D +++
Sbjct: 479 ---------VLSAD-EAQKHSIHDVVMPLPGFDVIYPTHSVGQGYREMLSADDLDIDNMR 528
Query: 381 HNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEE 440
H V+++ S+ G YRRV +P D WEL+ Y D PL TDL+K+
Sbjct: 529 HKVRDY---SLAGAYRRVLIRPSDVSWELVQYDDPRVPLVHTDLEKL------------- 572
Query: 441 AVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALK 500
E P+ TE A E P
Sbjct: 573 ------ENKPAPV------------YLTEGKYCALKMEFSLP------------------ 596
Query: 501 LGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
SS YATMA+RE+LK TS+ LN
Sbjct: 597 ------SSTYATMAVREVLKMDTSIKNQTQLN 622
>gi|327273628|ref|XP_003221582.1| PREDICTED: pseudouridylate synthase 7 homolog [Anolis carolinensis]
Length = 658
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 177/512 (34%), Positives = 254/512 (49%), Gaps = 106/512 (20%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+WP+ G + F LYKENKDT +A+ ++SK L + P F + GTKDKR+++ Q + V +
Sbjct: 246 SWPKSRGSYCHFVLYKENKDTMDAINMLSKFLRVKPNIFSYMGTKDKRAITVQEIAVLRI 305
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
A +LA LNK L+ +LG+F Y L LG+L GN FT+ LR + E V + + SL
Sbjct: 306 TAQRLAHLNKCLMNFKLGNFSYKNHPLKLGELQGNHFTVVLRNITGTDEQV-QHAMQSLR 364
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKE 201
GFINY+G+QRFG+ ++PT+ VG +L+ W V +IL PR G E+ + K RE + +
Sbjct: 365 EIGFINYYGMQRFGTTAIPTYQVGRAILQNNWNEVVDLILKPRPGAEKGYLVKCREEWAK 424
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKKCP-GNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
T D LRKLP E +L+ L K N + A IPR R+MY+HSYQS++WN+
Sbjct: 425 TKDPAAALRKLPVKRCVEGQLLRGLSKYGLKNIVSAFGIIPRNNRLMYIHSYQSYVWNNM 484
Query: 261 ASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHP 320
S R++++G + V GDLV G T Y ++AD+
Sbjct: 485 VSKRIEEYGLK-AVPGDLVLKGGTAT------------YIEESEADN------------- 518
Query: 321 DGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESL 380
YTI D+V+PLPG VIYP + + E Y + D +++
Sbjct: 519 -------------------YTIHDIVMPLPGFDVIYPKHKIGEAYKEILAADNLDINNMK 559
Query: 381 HNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEE 440
H ++++ S++G YR+V +P WEL+ Y D PL TDLDK+
Sbjct: 560 HKIRDY---SLSGAYRKVIIRPQHVSWELVAYDDPKIPLFTTDLDKM------------- 603
Query: 441 AVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALK 500
E K P V + ++GK ALK
Sbjct: 604 -------------------------------------EGKTPAVLA-----TEGKYKALK 621
Query: 501 LGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
+ +LP S YATMAIRE+LK TS+ LN
Sbjct: 622 MDFSLPPSTYATMAIREVLKMDTSIKKQTQLN 653
>gi|359321762|ref|XP_003639692.1| PREDICTED: pseudouridylate synthase 7 homolog [Canis lupus
familiaris]
Length = 662
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 176/512 (34%), Positives = 263/512 (51%), Gaps = 106/512 (20%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+WP+ G + F LYKENKDT +A+ ++SK L + P F + GTKDKR+++ Q + V K
Sbjct: 250 SWPKSRGSYCHFVLYKENKDTMDAINVLSKYLRVKPNIFSYMGTKDKRAITVQEIAVLKI 309
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
A +LA LNK L+ +LG+F Y K L LG+L GN FT+ LR + ++D ++ + NSL
Sbjct: 310 SAQRLAHLNKCLMNFKLGNFSYQKNPLKLGELQGNHFTVVLRN-ITGTDDQVQQAMNSLK 368
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKE 201
GFINY+G+QRFG+ +VPT+ VG +L+ W + +IL PR G E+ + K RE + +
Sbjct: 369 EIGFINYYGMQRFGTTAVPTYQVGRAILQNSWTEVMDLILKPRSGAEKGYLVKCREEWAK 428
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKKCP-GNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
+ D LRKLP E +L+ L K N + A IPR R+MY+HSYQS++WN+
Sbjct: 429 SKDPAAALRKLPVKRCVEGQLLRGLSKYGMKNIVSAFGIIPRNNRLMYIHSYQSYVWNNM 488
Query: 261 ASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHP 320
S R++++G + V GDLV KG ++++DE
Sbjct: 489 VSKRIEEYGLKP-VPGDLVL-KG----------------------ATATYIDE------- 517
Query: 321 DGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESL 380
D+N+ Y+I DVV+PLPG VIYP + ++E Y + D +++
Sbjct: 518 ------------EDVNN--YSIHDVVMPLPGFDVIYPKHKISEAYREMLTADNLDIDNMR 563
Query: 381 HNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEE 440
H ++++ S++G YR++ +P + WE++ Y D PL TD+D +
Sbjct: 564 HKIRDY---SLSGAYRKIIIRPQNVSWEVVAYDDPKIPLFNTDVDNL------------- 607
Query: 441 AVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALK 500
E K P V + S+GK ALK
Sbjct: 608 -------------------------------------EGKPPPVFA-----SEGKYRALK 625
Query: 501 LGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
+ +LP S YATMAIRE+LK TS+ LN
Sbjct: 626 MDFSLPPSTYATMAIREVLKMDTSIKNQTQLN 657
>gi|48475200|gb|AAT44269.1| unknown protein [Oryza sativa Japonica Group]
gi|215694753|dbj|BAG89944.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 396
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 136/178 (76%), Positives = 158/178 (88%)
Query: 11 RGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKR 70
R D PFDSRGS +WP +GKFLRFHL KENKDTQEALG+I KMLG+ RSFGFAGTKDKR
Sbjct: 187 RDDRPFDSRGSTSWPNHVGKFLRFHLCKENKDTQEALGVIGKMLGLQSRSFGFAGTKDKR 246
Query: 71 SVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDS 130
+V+TQ+VTVFK A++LAALN RL GI++G+F YVKEGL+LGQL+GNRFTITLRGVV +S
Sbjct: 247 AVTTQQVTVFKISANRLAALNNRLFGIKVGNFSYVKEGLVLGQLMGNRFTITLRGVVAES 306
Query: 131 EDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGE 188
ED+IKAS LG+NGFINY+GLQRFGSGSVPTHLVGA LLRGEW+S+V +ILDPREG+
Sbjct: 307 EDIIKASVEGLGKNGFINYYGLQRFGSGSVPTHLVGAALLRGEWRSSVNLILDPREGD 364
>gi|410074743|ref|XP_003954954.1| hypothetical protein KAFR_0A03840 [Kazachstania africana CBS 2517]
gi|372461536|emb|CCF55819.1| hypothetical protein KAFR_0A03840 [Kazachstania africana CBS 2517]
Length = 680
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 187/531 (35%), Positives = 273/531 (51%), Gaps = 90/531 (16%)
Query: 17 DSRGSENWPEQLGK-FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQ 75
D+ G ENW K FL F L+KENKDT +A+ +ISK+L + + FAGTKD+R V+TQ
Sbjct: 205 DANGVENWGYGPAKEFLHFTLHKENKDTMDAVNVISKLLRVPTKLMRFAGTKDRRGVTTQ 264
Query: 76 RVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGV------VVD 129
R+++ +L ALN+ L G+ +G F + L LG L GN F I +RGV VD
Sbjct: 265 RLSISNINVDRLNALNRTLRGMLIGGFQFEDSSLNLGDLSGNEFVIVIRGVEVNKDASVD 324
Query: 130 SEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGER 189
++++ SL GFINYFG+QRFG+ S+ TH +G LL W++AV++IL +E
Sbjct: 325 LQEILSEGCKSLVSQGFINYFGMQRFGTFSISTHTIGKELLASNWENAVELILSDQENVL 384
Query: 190 NEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKK---------CPGNYLQALKAI 240
+AR+ + E D L+KLPR +AE AIL L +Y A+ I
Sbjct: 385 PSSKEARKIWAENKDAASALKKLPRQCIAENAILFYLSNQRKQEDGSYSVNDYYTAIMKI 444
Query: 241 PRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYE 300
PR LR MYVH+YQSF+WN S R++ G ++V VGDLV +
Sbjct: 445 PRNLRTMYVHAYQSFVWNAVTSKRIELFG-QNVTVGDLVL-------------------D 484
Query: 301 SSNDADDSSHLDEVPETDHPDGRHNL---VKTVTAADINSGKYTIDDVVLPLPGSRVIYP 357
SN++ +D E D R ++ K VT ADI++ +YTI+DVVLP PG ++YP
Sbjct: 485 DSNNSSLPKDVDGDDENFDEDLREDIFIRAKEVTQADIDTNRYTIEDVVLPTPGFDILYP 544
Query: 358 MN-DVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGN 416
N ++ E Y + KDG++ + V++F S+ G+YR + QKP E++++ Y
Sbjct: 545 TNEELKETYVEIMAKDGMDPFDMRRKVRDF---SLAGSYRNIIQKPKALEYKIVHYDSPT 601
Query: 417 KPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACA 476
+ L TDL+ + NN+ A
Sbjct: 602 QQLVNTDLEIL------------------------------------------NNQR--A 617
Query: 477 KEVKQPHVESVC---GADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTS 524
K+ Q +++S D G+ +A+ L L +S YATMA+REL+K TS
Sbjct: 618 KDSGQKYMKSKLERFAPDKGGESIAILLKFQLGTSAYATMALRELMKLETS 668
>gi|355714598|gb|AES05055.1| pseudouridylate synthase 7-like protein [Mustela putorius furo]
Length = 533
Score = 293 bits (750), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 176/512 (34%), Positives = 263/512 (51%), Gaps = 106/512 (20%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+WP+ G + F LYKENKDT +A+ ++SK L + P F + GTKDKR+++ Q + V K
Sbjct: 121 SWPKSRGSYCHFVLYKENKDTMDAINVLSKYLRVKPNIFSYMGTKDKRAITVQEIAVLKI 180
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
A +LA LNK L+ +LG+F Y K L LG+L GN FT+ LR + ++D ++ + NSL
Sbjct: 181 TAQRLAHLNKCLMNFKLGNFSYQKNPLKLGELQGNHFTVVLRN-ITGTDDQVQQAMNSLK 239
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKE 201
GFINY+G+QRFG+ +VPT+ VG +L+ W + +IL PR G E+ + K RE + +
Sbjct: 240 EIGFINYYGMQRFGTTAVPTYQVGRAILQNSWTEVMDLILKPRSGAEKGYLVKCREEWAK 299
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKKC-PGNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
T D LRKLP E +L+ L K N + A IPR R+MY+HSYQS++WN+
Sbjct: 300 TKDPAAALRKLPVKRCVEGQLLRGLSKYGMKNIVSAFGIIPRNNRLMYIHSYQSYVWNNM 359
Query: 261 ASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHP 320
S R++++G + V GDLV KG ++++DE
Sbjct: 360 VSKRIEEYGLKP-VPGDLVL-KG----------------------ATATYIDE------- 388
Query: 321 DGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESL 380
D+N+ Y+I DVV+PLPG VIYP + +++ Y + D +++
Sbjct: 389 ------------EDVNN--YSIHDVVMPLPGFDVIYPKHKISKAYREMLTADNLDIDNMR 434
Query: 381 HNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEE 440
H ++++ S++G YR++ +P + WE++ Y D PL TD+D +
Sbjct: 435 HKIRDY---SLSGAYRKIIIRPQNVSWEVVAYDDPKIPLFNTDVDNL------------- 478
Query: 441 AVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALK 500
E K P V + S+GK ALK
Sbjct: 479 -------------------------------------EGKPPPVFA-----SEGKYRALK 496
Query: 501 LGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
+ +LP S YATMAIRE+LK TS+ LN
Sbjct: 497 MDFSLPPSTYATMAIREVLKMDTSIKNQTQLN 528
>gi|301755649|ref|XP_002913674.1| PREDICTED: pseudouridylate synthase 7 homolog [Ailuropoda
melanoleuca]
gi|281349127|gb|EFB24711.1| hypothetical protein PANDA_001493 [Ailuropoda melanoleuca]
Length = 662
Score = 293 bits (750), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 179/512 (34%), Positives = 261/512 (50%), Gaps = 106/512 (20%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+WP+ G + F LYKENKDT +A+ ++SK L + P F + GTKDKR+++ Q + V K
Sbjct: 250 SWPKSRGSYCHFVLYKENKDTMDAINVLSKYLRVKPNIFSYMGTKDKRAITVQEIAVLKI 309
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
A +LA LNK L+ +LG+F Y K L LG+L GN FT+ LR + E V +A NSL
Sbjct: 310 TAQRLAHLNKCLMNFKLGNFSYQKNPLKLGELQGNHFTVVLRNITGTDEQVQQA-MNSLK 368
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKE 201
GFINY+G+QRFG+ +VPT+ VG +L+ W + +IL PR G E+ + K RE + +
Sbjct: 369 EIGFINYYGMQRFGTTAVPTYQVGRAILQNSWTEVMDLILKPRSGAEKGYLVKCREEWAK 428
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKKCP-GNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
T D LRKLP E +L+ L K N + A IPR R+MY+HSYQS++WN+
Sbjct: 429 TKDPAAALRKLPVKRCVEGQLLRGLSKYGMKNIVSAFGIIPRNNRLMYIHSYQSYVWNNM 488
Query: 261 ASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHP 320
S R++++G + V GDLV KG ++++DE
Sbjct: 489 VSKRIEEYGLKP-VPGDLVL-KG----------------------ATATYIDE------- 517
Query: 321 DGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESL 380
D+N+ Y+I DVV+PLPG VIYP + ++E Y + D +++
Sbjct: 518 ------------DDVNN--YSIHDVVMPLPGFDVIYPKHKISEAYREMLTADNLDIDNMR 563
Query: 381 HNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEE 440
H ++++ S++G YR++ +P + WE++ Y D PL TD+D +
Sbjct: 564 HKIRDY---SLSGAYRKIIIRPQNVSWEVVAYDDPKIPLFNTDVDNL------------- 607
Query: 441 AVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALK 500
E K P V + S+GK ALK
Sbjct: 608 -------------------------------------EGKPPPVFA-----SEGKYRALK 625
Query: 501 LGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
+ +LP S YATMAIRE+LK TS+ LN
Sbjct: 626 MDFSLPPSTYATMAIREVLKMDTSIKNQTQLN 657
>gi|291391283|ref|XP_002712075.1| PREDICTED: pseudouridylate synthase 7 homolog [Oryctolagus
cuniculus]
Length = 660
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 179/511 (35%), Positives = 259/511 (50%), Gaps = 106/511 (20%)
Query: 24 WPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQR 83
WP+ G + F LYKENKDT +A+ ++SK L + P F + GTKDKR+++ Q + V K
Sbjct: 249 WPKSRGSYCHFVLYKENKDTMDAINVLSKYLRVKPNIFSYMGTKDKRAITVQEIAVLKIS 308
Query: 84 ASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGR 143
A +LA LNK L+ +LG+F Y K L LG+L GN FT+ LR + E V + + NSL
Sbjct: 309 AQRLAHLNKCLMNFKLGNFSYQKNPLKLGELQGNHFTVVLRNITGTDEQV-QHAMNSLKE 367
Query: 144 NGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKET 202
GFINY+G+QRFG+ +VPT+ VG +L+ W + +IL PR G E+ + K RE + +T
Sbjct: 368 IGFINYYGMQRFGTTAVPTYQVGRAILQNSWAEVMDLILKPRSGAEKGYLVKCREEWAKT 427
Query: 203 DDIDGTLRKLPRHLVAERAILQCLKKCP-GNYLQALKAIPRTLRMMYVHSYQSFLWNHAA 261
D LRKLP E +L+ L K N + A IPR R+MY+HSYQS++WN+
Sbjct: 428 KDPAAALRKLPVKRCVEGQLLRGLSKYGMKNIVSAFGIIPRNNRLMYIHSYQSYVWNNMV 487
Query: 262 SARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPD 321
S R++ +G + V GDLV KG +++++E D
Sbjct: 488 SKRIEDYGLKP-VPGDLVL-KG----------------------ATATYIEE-------D 516
Query: 322 GRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLH 381
HN Y+I DVV+PLPG VIYP + ++E Y + D +++ H
Sbjct: 517 DVHN--------------YSIHDVVMPLPGFDVIYPKHKISEAYREMLTADNLDIDNMRH 562
Query: 382 NVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEA 441
++++ S++G YR++ +P + WE++TY D PL TD+D +
Sbjct: 563 KIRDY---SLSGAYRKIIIRPQNVSWEVVTYDDPKIPLFNTDVDNL-------------- 605
Query: 442 VCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKL 501
E K P V + S+GK ALK+
Sbjct: 606 ------------------------------------EGKPPPVFA-----SEGKYRALKM 624
Query: 502 GLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
+LP S YATMAIRE+LK TS+ LN
Sbjct: 625 DFSLPPSTYATMAIREVLKMDTSIKKQTQLN 655
>gi|365758235|gb|EHN00086.1| Pus7p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 677
Score = 292 bits (748), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 189/542 (34%), Positives = 284/542 (52%), Gaps = 86/542 (15%)
Query: 3 RNSKKRK-ERGDNPFDSRGSENWPEQLGK-FLRFHLYKENKDTQEALGLISKMLGILPRS 60
RNS+ K E+ + DS G ENW K F+ F L+KENKDT E + +I+K+L + R
Sbjct: 190 RNSRTNKQEKINQTKDSNGVENWGYGPSKDFIHFTLHKENKDTMEGVNVITKLLRVPSRV 249
Query: 61 FGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFT 120
+AGTKD+R+V+ QR+++ K +L ALN+ L G+ +G++ + GL LG L GN F
Sbjct: 250 IRYAGTKDRRAVTCQRLSISKIGLDRLNALNRTLKGMIIGNYNFSDAGLNLGDLKGNEFV 309
Query: 121 ITLRGVVVDS-----EDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWK 175
+ +R V V + E+++ SL NGFINYFG+QRFG+ S+ TH +G LL W+
Sbjct: 310 VVIRDVTVGTSGAVLEEIVSNGCKSLSENGFINYFGMQRFGTFSISTHTIGRELLLSNWE 369
Query: 176 SAVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKK------- 228
A ++IL +E + +AR + T D L+++PR +AE A+L L
Sbjct: 370 KAAELILSDQENVLPKSKEARNIWGTTKDAALALKQMPRQCLAENALLYSLSNQRKEDDG 429
Query: 229 --CPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDT 286
Y A+ IPR LR MYVH+YQS++WN AS R++ HG + +VVGDLV DD
Sbjct: 430 SYSANAYYTAIMKIPRNLRTMYVHAYQSYVWNSIASKRIELHGLK-LVVGDLVI---DDA 485
Query: 287 EKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVV 346
EK + S DD ++V E + K VT DI+SGKY+++DVV
Sbjct: 486 EKPV----------SIGGIDDEDFDEDVRE-----AQFIRAKAVTQEDIDSGKYSMEDVV 530
Query: 347 LPLPGSRVIYPMN-DVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDF 405
LP PG V+YP N ++ ++Y + + D ++ + V++F S+ G+YR V QKP +
Sbjct: 531 LPSPGFDVLYPSNEELKQLYVDILKADNMDPFDMRRKVRDF---SLAGSYRNVIQKPKNL 587
Query: 406 EWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIK 465
E++++ Y D ++ +A TDLD + +
Sbjct: 588 EYKIIHYDDPSQQIANTDLDILNNTR---------------------------------- 613
Query: 466 LSTENNEAACAKEVKQPHVESVCG---ADSQGKQMALKLGLTLPSSCYATMAIRELLKTS 522
AKE Q ++++ D G++ A L L +S YATMA+REL+K
Sbjct: 614 ----------AKESGQKYMKAKLNRYMPDIGGEKTAAVLKFQLGTSAYATMALRELMKLE 663
Query: 523 TS 524
TS
Sbjct: 664 TS 665
>gi|431839402|gb|ELK01328.1| Pseudouridylate synthase 7 like protein [Pteropus alecto]
Length = 656
Score = 292 bits (747), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 175/512 (34%), Positives = 262/512 (51%), Gaps = 106/512 (20%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+WP+ G + F LYKENKDT +A+ ++SK L + P F + GTKDKR+++ Q + V K
Sbjct: 244 SWPKSRGSYCHFVLYKENKDTMDAINVLSKYLRVKPNIFSYMGTKDKRAITVQEIAVLKI 303
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
A +LA LNK L+ +LG+F Y K L LG+L GN FT+ LR + ++D ++ + NSL
Sbjct: 304 TAQRLAHLNKCLMNFKLGNFSYQKNPLKLGELQGNHFTVVLRN-ITGTDDQVQQAMNSLK 362
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKE 201
GFINY+G+QRFG+ ++PT+ VG +L+ W + +IL PR G E+ + K RE + +
Sbjct: 363 EIGFINYYGMQRFGTTAIPTYQVGRAILQNSWAEVMDLILKPRSGAEKGYLVKCREEWAK 422
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKKCP-GNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
T D LRKLP E +L+ L K N + A IPR R+MY+HSYQS++WN+
Sbjct: 423 TKDPAAALRKLPVKRCVEGQLLRGLSKYGMKNIVSAFGIIPRNNRLMYIHSYQSYVWNNM 482
Query: 261 ASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHP 320
S R++++G + V GDLV KG +++++E
Sbjct: 483 VSKRIEEYGLKP-VPGDLVL-KG----------------------ATATYIEE------- 511
Query: 321 DGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESL 380
+ HN Y+I DVV+PLPG VIYP + ++E Y + D +++
Sbjct: 512 EDVHN--------------YSIHDVVMPLPGFDVIYPKHKISEAYREMLTADNLDIDNMR 557
Query: 381 HNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEE 440
H ++++ S++G YR++ +P + WE++ Y D PL TD+D +
Sbjct: 558 HKIRDY---SLSGAYRKIIIRPQNVSWEVVAYDDPKIPLFNTDVDNL------------- 601
Query: 441 AVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALK 500
E K P V + S+GK ALK
Sbjct: 602 -------------------------------------EGKPPPVFA-----SEGKYRALK 619
Query: 501 LGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
+ +LP S YATMAIRE+LK TS+ LN
Sbjct: 620 MDFSLPPSTYATMAIREVLKMDTSIKNQTQLN 651
>gi|15620853|dbj|BAB67790.1| KIAA1897 protein [Homo sapiens]
Length = 645
Score = 292 bits (747), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 176/512 (34%), Positives = 261/512 (50%), Gaps = 106/512 (20%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+WP+ G + F LYKENKDT +A+ ++SK L + P F + GTKDKR+++ Q + V K
Sbjct: 233 SWPKSRGSYCHFVLYKENKDTMDAINVLSKYLRVKPNIFSYMGTKDKRAITVQEIAVLKI 292
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
A +LA LNK L+ +LG+F Y K L LG+L GN FT+ LR + ++D ++ + NSL
Sbjct: 293 TAQRLAHLNKCLMNFKLGNFSYQKNPLKLGELQGNHFTVVLRN-ITGTDDQVQQAMNSLK 351
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKE 201
GFINY+G+QRFG+ +VPT+ VG +L+ W + +IL PR G E+ + K RE + +
Sbjct: 352 EIGFINYYGMQRFGTTAVPTYQVGRAILQNSWTEVMDLILKPRSGAEKGYLVKCREEWAK 411
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKKCP-GNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
T D LRKLP E +L+ L K N + A IPR R+MY+HSYQS++WN+
Sbjct: 412 TKDPTAALRKLPVKRCVEGQLLRGLSKYGMKNIVSAFGIIPRNNRLMYIHSYQSYVWNNM 471
Query: 261 ASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHP 320
S R++ +G + V GDLV KG +++++E
Sbjct: 472 VSKRIEDYGLKP-VPGDLVL-KG----------------------ATATYIEE------- 500
Query: 321 DGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESL 380
D+N+ Y+I DVV+PLPG VIYP + + E Y + D +++
Sbjct: 501 ------------DDVNN--YSIHDVVMPLPGFDVIYPKHKIQEAYREMLTADNLDIDNMR 546
Query: 381 HNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEE 440
H ++++ S++G YR++ +P + WE++ Y D PL TD+D +
Sbjct: 547 HKIRDY---SLSGAYRKIIIRPQNVSWEVVAYDDPKIPLFNTDVDNL------------- 590
Query: 441 AVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALK 500
E K P V + S+GK ALK
Sbjct: 591 -------------------------------------EGKTPPVFA-----SEGKYRALK 608
Query: 501 LGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
+ +LP S YATMAIRE+LK TS+ LN
Sbjct: 609 MDFSLPPSTYATMAIREVLKMDTSIKNQTQLN 640
>gi|332238025|ref|XP_003268203.1| PREDICTED: pseudouridylate synthase 7 homolog isoform 2 [Nomascus
leucogenys]
Length = 667
Score = 292 bits (747), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 176/512 (34%), Positives = 261/512 (50%), Gaps = 106/512 (20%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+WP+ G + F LYKENKDT +A+ ++SK L + P F + GTKDKR+++ Q + V K
Sbjct: 255 SWPKSRGSYCHFVLYKENKDTMDAINVLSKYLRVKPNIFSYMGTKDKRAITVQEIAVLKI 314
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
A +LA LNK L+ +LG+F Y K L LG+L GN FT+ LR + ++D ++ + NSL
Sbjct: 315 TAQRLAHLNKCLMNFKLGNFSYQKNPLKLGELQGNHFTVVLRN-ITGTDDQVQQAMNSLK 373
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKE 201
GFINY+G+QRFG+ +VPT+ VG +L+ W + +IL PR G E+ + K RE + +
Sbjct: 374 EIGFINYYGMQRFGTTAVPTYQVGRAILQNSWTEVMDLILKPRSGAEKGYLVKCREEWAK 433
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKKCP-GNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
T D LRKLP E +L+ L K N + A IPR R+MY+HSYQS++WN+
Sbjct: 434 TKDPTAALRKLPVKRCVEGQLLRGLSKYGMKNIVSAFGIIPRNNRLMYIHSYQSYVWNNM 493
Query: 261 ASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHP 320
S R++ +G + V GDLV KG +++++E
Sbjct: 494 VSKRIEDYGLKP-VPGDLVL-KG----------------------ATATYIEE------- 522
Query: 321 DGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESL 380
D+N+ Y+I DVV+PLPG VIYP + + E Y + D +++
Sbjct: 523 ------------DDVNN--YSIHDVVMPLPGFDVIYPKHKIQEAYREMLTADNLDIDNMR 568
Query: 381 HNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEE 440
H ++++ S++G YR++ +P + WE++ Y D PL TD+D +
Sbjct: 569 HKIRDY---SLSGAYRKIIIRPQNVSWEVVAYDDPKIPLFNTDVDNL------------- 612
Query: 441 AVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALK 500
E K P V + S+GK ALK
Sbjct: 613 -------------------------------------EGKPPPVFA-----SEGKYRALK 630
Query: 501 LGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
+ +LP S YATMAIRE+LK TS+ LN
Sbjct: 631 MDFSLPPSTYATMAIREVLKMDTSIKNQTQLN 662
>gi|193785917|dbj|BAG54704.1| unnamed protein product [Homo sapiens]
Length = 661
Score = 291 bits (746), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 176/512 (34%), Positives = 261/512 (50%), Gaps = 106/512 (20%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+WP+ G + F LYKENKDT +A+ ++SK L + P F + GTKDKR+++ Q + V K
Sbjct: 249 SWPKSRGSYCHFVLYKENKDTMDAINVLSKYLRVKPNIFSYMGTKDKRAITVQEIAVLKI 308
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
A +LA LNK L+ +LG+F Y K L LG+L GN FT+ LR + ++D ++ + NSL
Sbjct: 309 TAQRLAHLNKCLMNFKLGNFSYQKNPLKLGELQGNHFTVVLRN-ITGTDDQVQQAMNSLK 367
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKE 201
GFINY+G+QRFG+ +VPT+ VG +L+ W + +IL PR G E+ + K RE + +
Sbjct: 368 EIGFINYYGMQRFGTTAVPTYQVGRAILQNSWTEVMDLILKPRSGAEKGYLVKCREEWAK 427
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKKCP-GNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
T D LRKLP E +L+ L K N + A IPR R+MY+HSYQS++WN+
Sbjct: 428 TKDPTAALRKLPVKRCVEGQLLRGLSKYGMKNIVSAFGIIPRNNRLMYIHSYQSYVWNNM 487
Query: 261 ASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHP 320
S R++ +G + V GDLV KG +++++E
Sbjct: 488 VSKRIEDYGLKP-VPGDLVL-KG----------------------ATATYIEE------- 516
Query: 321 DGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESL 380
D+N+ Y+I DVV+PLPG VIYP + + E Y + D +++
Sbjct: 517 ------------DDVNN--YSIHDVVMPLPGFDVIYPKHKIQEAYREMLTADNLDIDNMR 562
Query: 381 HNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEE 440
H ++++ S++G YR++ +P + WE++ Y D PL TD+D +
Sbjct: 563 HKIRDY---SLSGAYRKIIIRPQNVSWEVVAYDDPKIPLFNTDVDNL------------- 606
Query: 441 AVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALK 500
E K P V + S+GK ALK
Sbjct: 607 -------------------------------------EGKTPPVFA-----SEGKYRALK 624
Query: 501 LGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
+ +LP S YATMAIRE+LK TS+ LN
Sbjct: 625 MDFSLPPSTYATMAIREVLKMDTSIKNQTQLN 656
>gi|348568125|ref|XP_003469849.1| PREDICTED: pseudouridylate synthase 7 homolog isoform 1 [Cavia
porcellus]
Length = 657
Score = 291 bits (746), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 175/512 (34%), Positives = 254/512 (49%), Gaps = 106/512 (20%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+WP+ G + F LYKENKDT +A+ ++SK L + P F + GTKDKR+++ Q + V K
Sbjct: 245 SWPKSRGSYCHFVLYKENKDTMDAINVLSKYLRVKPNIFSYMGTKDKRAITVQEIAVLKI 304
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
A +LA LNK L+ +LG+F Y K L LG+L GN FT+ LR + ++D ++ + NSL
Sbjct: 305 SAQRLAHLNKCLMNFKLGNFSYQKNPLKLGELQGNHFTVVLRN-ITGTDDQVQQAMNSLR 363
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKE 201
GFINY+G+QRFG+ +VPT+ VG +L+ W + +IL PR G E+ + K RE + +
Sbjct: 364 DIGFINYYGMQRFGTTAVPTYQVGRAILQNSWTEVMDLILKPRSGAEKGYLVKCREEWAK 423
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKKCP-GNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
T D L+KLP E +L+ L K N + A IPR R+MY+HSYQS++WN+
Sbjct: 424 TKDPAAALKKLPVKRCVEGQLLRGLSKYGMKNIVSAFGIIPRNNRLMYIHSYQSYVWNNM 483
Query: 261 ASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHP 320
S R++ +G V GDLV T E G VN
Sbjct: 484 VSKRIEDYGLRP-VPGDLVLKGATATYIEEGDVN-------------------------- 516
Query: 321 DGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESL 380
Y+I DVV+PLPG VIYP + ++E Y + D +++
Sbjct: 517 ------------------NYSIHDVVMPLPGFDVIYPKHKISEAYREMLTADNLDIDNMR 558
Query: 381 HNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEE 440
H ++++ S++G YR++ +P + WE++ Y D PL TD+D +
Sbjct: 559 HKIRDY---SLSGAYRKIIIRPQNVSWEVVAYDDPKIPLFNTDVDNL------------- 602
Query: 441 AVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALK 500
E K P V + S+GK ALK
Sbjct: 603 -------------------------------------EGKPPPVFA-----SEGKYRALK 620
Query: 501 LGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
+ +LP S YATMAIRE+LK TS+ LN
Sbjct: 621 MDFSLPPSTYATMAIREVLKMDTSIKNQTQLN 652
>gi|323302960|gb|EGA56764.1| Pus7p [Saccharomyces cerevisiae FostersB]
gi|323307296|gb|EGA60576.1| Pus7p [Saccharomyces cerevisiae FostersO]
Length = 676
Score = 291 bits (746), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 191/542 (35%), Positives = 285/542 (52%), Gaps = 86/542 (15%)
Query: 3 RNSKKRK-ERGDNPFDSRGSENWPEQLGK-FLRFHLYKENKDTQEALGLISKMLGILPRS 60
RNS+ K E+ + D+ G ENW K F+ F L+KENKDT EA+ +I+K+L + R
Sbjct: 189 RNSRTNKQEKINQTRDANGVENWGYGPSKDFIHFTLHKENKDTMEAVNVITKLLRVPSRV 248
Query: 61 FGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFT 120
+AGTKD+R+V+ QRV++ K +L ALNK L G+ +G++ + L LG L GN F
Sbjct: 249 IRYAGTKDRRAVTCQRVSISKIGLDRLNALNKTLKGMIIGNYNFSDASLNLGDLKGNEFV 308
Query: 121 ITLRGVV-----VDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWK 175
+ +R V V E+++ SL NGFINYFG+QRFG+ S+ TH +G LL WK
Sbjct: 309 VVIRDVTTGNSEVSLEEIVSNGCKSLSENGFINYFGMQRFGTFSISTHTIGRELLLSNWK 368
Query: 176 SAVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCL----KKCPG 231
A ++IL ++ + +AR+ + ET D L+++PR +AE A+L L K+ G
Sbjct: 369 KAAELILSDQDNVLPKSKEARKIWAETKDAALALKQMPRQCLAENALLYSLSNQRKEEDG 428
Query: 232 NYLQ-----ALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDT 286
Y + A+ IPR LR MYVH+YQS++WN AS R++ HG + +VVGDLV DT
Sbjct: 429 TYSENAYYTAIMKIPRNLRTMYVHAYQSYVWNSIASKRIELHGLK-LVVGDLVI----DT 483
Query: 287 EKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVV 346
++ ++ D DE D + + K VT DI+SGKYT++DVV
Sbjct: 484 SEKSPLIS----------GIDDEDFDE----DVREAQFIRAKAVTQEDIDSGKYTMEDVV 529
Query: 347 LPLPGSRVIYPMN-DVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDF 405
LP PG V+YP N ++ ++Y + + D ++ V++F S+ G+YR V QKP
Sbjct: 530 LPSPGFDVLYPSNEELKQLYVDILKADNMDPFNMRRKVRDF---SLAGSYRTVIQKPKSL 586
Query: 406 EWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIK 465
E+ ++ Y D ++ L TDLD + +
Sbjct: 587 EYRIIHYDDPSQQLVNTDLDILNNTR---------------------------------- 612
Query: 466 LSTENNEAACAKEVKQPHVESVCG---ADSQGKQMALKLGLTLPSSCYATMAIRELLKTS 522
AKE Q ++++ D G++ A+ L L +S YATMA+REL+K
Sbjct: 613 ----------AKESGQKYMKAKLDRYMPDKGGEKTAVVLKFQLGTSAYATMALRELMKLE 662
Query: 523 TS 524
TS
Sbjct: 663 TS 664
>gi|444725003|gb|ELW65586.1| Pseudouridylate synthase 7 like protein [Tupaia chinensis]
Length = 661
Score = 291 bits (746), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 173/512 (33%), Positives = 263/512 (51%), Gaps = 106/512 (20%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+WP+ G + F LYKENKDT +A+ ++SK L + P F + GTKDKR+++ Q + V K
Sbjct: 249 SWPKSRGSYCHFVLYKENKDTMDAINVLSKYLRVKPNIFSYMGTKDKRAITVQEIAVLKI 308
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
A +LA LNK L+ +LG+F Y K L LG+L GN FT+ LR + ++D ++ + NSL
Sbjct: 309 TAQRLAHLNKCLMNFKLGNFSYQKSPLKLGELQGNHFTVVLRN-ITGTDDQVQQAMNSLK 367
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKE 201
GFINY+G+QRFG+ +VPT+ VG +L+ W + +IL PR G E+ + K RE + +
Sbjct: 368 EIGFINYYGMQRFGTTAVPTYQVGRAILQNSWTEVMDLILKPRSGAEKGYLVKCREEWAK 427
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKKCP-GNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
T D L+KLP E +L+ L K N + A IPR R+MY+HSYQS++WN+
Sbjct: 428 TKDPAAALKKLPVKRCVEGQLLRGLSKYGMKNIVSAFGIIPRNNRLMYIHSYQSYVWNNM 487
Query: 261 ASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHP 320
S R++++G + V GDL+ KG +++++E
Sbjct: 488 VSKRIEEYGLKP-VPGDLIL-KG----------------------ATATYIEE------- 516
Query: 321 DGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESL 380
D+N+ Y+I DVV+PLPG +IYP + ++E Y + D +++
Sbjct: 517 ------------EDVNN--YSIHDVVMPLPGFDIIYPKHKISEAYREMLTADNLDIDNMR 562
Query: 381 HNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEE 440
H ++++ S++G YR++ +P + WE++ Y D PL TD+D +
Sbjct: 563 HKIRDY---SLSGAYRKIIIRPQNVSWEVVAYDDPKIPLFNTDVDNL------------- 606
Query: 441 AVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALK 500
E K P V + S+GK ALK
Sbjct: 607 -------------------------------------EGKPPPVFA-----SEGKYRALK 624
Query: 501 LGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
+ +LP S YATMAIRE+LK TS+ LN
Sbjct: 625 MDFSLPPSTYATMAIREVLKMDTSIKHQTQLN 656
>gi|332238023|ref|XP_003268202.1| PREDICTED: pseudouridylate synthase 7 homolog isoform 1 [Nomascus
leucogenys]
Length = 661
Score = 291 bits (746), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 176/512 (34%), Positives = 261/512 (50%), Gaps = 106/512 (20%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+WP+ G + F LYKENKDT +A+ ++SK L + P F + GTKDKR+++ Q + V K
Sbjct: 249 SWPKSRGSYCHFVLYKENKDTMDAINVLSKYLRVKPNIFSYMGTKDKRAITVQEIAVLKI 308
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
A +LA LNK L+ +LG+F Y K L LG+L GN FT+ LR + ++D ++ + NSL
Sbjct: 309 TAQRLAHLNKCLMNFKLGNFSYQKNPLKLGELQGNHFTVVLRN-ITGTDDQVQQAMNSLK 367
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKE 201
GFINY+G+QRFG+ +VPT+ VG +L+ W + +IL PR G E+ + K RE + +
Sbjct: 368 EIGFINYYGMQRFGTTAVPTYQVGRAILQNSWTEVMDLILKPRSGAEKGYLVKCREEWAK 427
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKKCP-GNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
T D LRKLP E +L+ L K N + A IPR R+MY+HSYQS++WN+
Sbjct: 428 TKDPTAALRKLPVKRCVEGQLLRGLSKYGMKNIVSAFGIIPRNNRLMYIHSYQSYVWNNM 487
Query: 261 ASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHP 320
S R++ +G + V GDLV KG +++++E
Sbjct: 488 VSKRIEDYGLKP-VPGDLVL-KG----------------------ATATYIEE------- 516
Query: 321 DGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESL 380
D+N+ Y+I DVV+PLPG VIYP + + E Y + D +++
Sbjct: 517 ------------DDVNN--YSIHDVVMPLPGFDVIYPKHKIQEAYREMLTADNLDIDNMR 562
Query: 381 HNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEE 440
H ++++ S++G YR++ +P + WE++ Y D PL TD+D +
Sbjct: 563 HKIRDY---SLSGAYRKIIIRPQNVSWEVVAYDDPKIPLFNTDVDNL------------- 606
Query: 441 AVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALK 500
E K P V + S+GK ALK
Sbjct: 607 -------------------------------------EGKPPPVFA-----SEGKYRALK 624
Query: 501 LGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
+ +LP S YATMAIRE+LK TS+ LN
Sbjct: 625 MDFSLPPSTYATMAIREVLKMDTSIKNQTQLN 656
>gi|50727002|ref|NP_061915.2| pseudouridylate synthase 7 homolog [Homo sapiens]
gi|332868205|ref|XP_003318781.1| PREDICTED: pseudouridylate synthase 7 homolog isoform 1 [Pan
troglodytes]
gi|332868207|ref|XP_527856.3| PREDICTED: pseudouridylate synthase 7 homolog isoform 2 [Pan
troglodytes]
gi|397479890|ref|XP_003811234.1| PREDICTED: pseudouridylate synthase 7 homolog isoform 1 [Pan
paniscus]
gi|397479892|ref|XP_003811235.1| PREDICTED: pseudouridylate synthase 7 homolog isoform 2 [Pan
paniscus]
gi|37090412|sp|Q96PZ0.2|PUS7_HUMAN RecName: Full=Pseudouridylate synthase 7 homolog
gi|51574076|gb|AAH11396.2| Pseudouridylate synthase 7 homolog (S. cerevisiae) [Homo sapiens]
gi|119603769|gb|EAW83363.1| pseudouridylate synthase 7 homolog (S. cerevisiae), isoform CRA_a
[Homo sapiens]
gi|410225956|gb|JAA10197.1| pseudouridylate synthase 7 homolog [Pan troglodytes]
gi|410256618|gb|JAA16276.1| pseudouridylate synthase 7 homolog [Pan troglodytes]
gi|410299630|gb|JAA28415.1| pseudouridylate synthase 7 homolog [Pan troglodytes]
gi|410336151|gb|JAA37022.1| pseudouridylate synthase 7 homolog [Pan troglodytes]
Length = 661
Score = 291 bits (746), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 176/512 (34%), Positives = 261/512 (50%), Gaps = 106/512 (20%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+WP+ G + F LYKENKDT +A+ ++SK L + P F + GTKDKR+++ Q + V K
Sbjct: 249 SWPKSRGSYCHFVLYKENKDTMDAINVLSKYLRVKPNIFSYMGTKDKRAITVQEIAVLKI 308
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
A +LA LNK L+ +LG+F Y K L LG+L GN FT+ LR + ++D ++ + NSL
Sbjct: 309 TAQRLAHLNKCLMNFKLGNFSYQKNPLKLGELQGNHFTVVLRN-ITGTDDQVQQAMNSLK 367
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKE 201
GFINY+G+QRFG+ +VPT+ VG +L+ W + +IL PR G E+ + K RE + +
Sbjct: 368 EIGFINYYGMQRFGTTAVPTYQVGRAILQNSWTEVMDLILKPRSGAEKGYLVKCREEWAK 427
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKKCP-GNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
T D LRKLP E +L+ L K N + A IPR R+MY+HSYQS++WN+
Sbjct: 428 TKDPTAALRKLPVKRCVEGQLLRGLSKYGMKNIVSAFGIIPRNNRLMYIHSYQSYVWNNM 487
Query: 261 ASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHP 320
S R++ +G + V GDLV KG +++++E
Sbjct: 488 VSKRIEDYGLKP-VPGDLVL-KG----------------------ATATYIEE------- 516
Query: 321 DGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESL 380
D+N+ Y+I DVV+PLPG VIYP + + E Y + D +++
Sbjct: 517 ------------DDVNN--YSIHDVVMPLPGFDVIYPKHKIQEAYREMLTADNLDIDNMR 562
Query: 381 HNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEE 440
H ++++ S++G YR++ +P + WE++ Y D PL TD+D +
Sbjct: 563 HKIRDY---SLSGAYRKIIIRPQNVSWEVVAYDDPKIPLFNTDVDNL------------- 606
Query: 441 AVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALK 500
E K P V + S+GK ALK
Sbjct: 607 -------------------------------------EGKTPPVFA-----SEGKYRALK 624
Query: 501 LGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
+ +LP S YATMAIRE+LK TS+ LN
Sbjct: 625 MDFSLPPSTYATMAIREVLKMDTSIKNQTQLN 656
>gi|194209447|ref|XP_001489878.2| PREDICTED: LOW QUALITY PROTEIN: pseudouridylate synthase 7 homolog
[Equus caballus]
Length = 664
Score = 291 bits (746), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 176/513 (34%), Positives = 253/513 (49%), Gaps = 106/513 (20%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+WP+ G + F LYKENKDT +A+ ++SK L + P F + GTKDKR+++ Q + V K
Sbjct: 250 SWPKSRGSYCHFVLYKENKDTMDAINVLSKYLRVKPNIFSYMGTKDKRAITVQEIAVLKI 309
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDV-IKASANSL 141
A +LA LNK L+ +LG+F Y K L LG+L GN+FT+ LR + D ++ + NSL
Sbjct: 310 TAQRLAHLNKCLMNFKLGNFSYQKNPLKLGELQGNQFTVVLRXKTITGTDAQVQQAMNSL 369
Query: 142 GRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYK 200
GFINY+G+QRFG+ +VPT+ VG +L+ W + +IL PR G E+ + K RE +
Sbjct: 370 KEIGFINYYGMQRFGTTAVPTYQVGRAILQNSWAEVMDLILKPRSGAEKGYLVKCREEWA 429
Query: 201 ETDDIDGTLRKLPRHLVAERAILQCLKKCP-GNYLQALKAIPRTLRMMYVHSYQSFLWNH 259
T D LRKLP E +L+ L K N + A IPR R+MY+HSYQS++WN+
Sbjct: 430 RTRDPAAALRKLPVRRCVEGQLLRGLSKYGMKNMVSAFGIIPRNNRLMYIHSYQSYVWNN 489
Query: 260 AASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDH 319
S R++++G + V GDLV T Y D D+
Sbjct: 490 MVSKRIEEYGLKP-VPGDLVLKGATAT------------YIEEEDVDN------------ 524
Query: 320 PDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTES 379
Y+I DVV+PLPG VIYP + ++E Y + D +++
Sbjct: 525 --------------------YSIHDVVMPLPGFDVIYPKHKISEAYREMLTADNLDIDNM 564
Query: 380 LHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEE 439
H ++++ S++G YR+V +P + WE++ Y D PL TD+D +
Sbjct: 565 RHKIRDY---SLSGAYRKVVIRPQNVSWEVVAYDDPKIPLFNTDVDNL------------ 609
Query: 440 EAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMAL 499
E K P V + S+GK AL
Sbjct: 610 --------------------------------------EGKPPPVFA-----SEGKYRAL 626
Query: 500 KLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
K+ LP S YATMAIRE+LK TS+ LN
Sbjct: 627 KMDFALPPSTYATMAIREVLKMDTSIKNQTQLN 659
>gi|348568127|ref|XP_003469850.1| PREDICTED: pseudouridylate synthase 7 homolog isoform 2 [Cavia
porcellus]
Length = 663
Score = 291 bits (746), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 175/512 (34%), Positives = 254/512 (49%), Gaps = 106/512 (20%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+WP+ G + F LYKENKDT +A+ ++SK L + P F + GTKDKR+++ Q + V K
Sbjct: 251 SWPKSRGSYCHFVLYKENKDTMDAINVLSKYLRVKPNIFSYMGTKDKRAITVQEIAVLKI 310
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
A +LA LNK L+ +LG+F Y K L LG+L GN FT+ LR + ++D ++ + NSL
Sbjct: 311 SAQRLAHLNKCLMNFKLGNFSYQKNPLKLGELQGNHFTVVLRN-ITGTDDQVQQAMNSLR 369
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKE 201
GFINY+G+QRFG+ +VPT+ VG +L+ W + +IL PR G E+ + K RE + +
Sbjct: 370 DIGFINYYGMQRFGTTAVPTYQVGRAILQNSWTEVMDLILKPRSGAEKGYLVKCREEWAK 429
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKKCP-GNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
T D L+KLP E +L+ L K N + A IPR R+MY+HSYQS++WN+
Sbjct: 430 TKDPAAALKKLPVKRCVEGQLLRGLSKYGMKNIVSAFGIIPRNNRLMYIHSYQSYVWNNM 489
Query: 261 ASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHP 320
S R++ +G V GDLV T E G VN
Sbjct: 490 VSKRIEDYGLRP-VPGDLVLKGATATYIEEGDVN-------------------------- 522
Query: 321 DGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESL 380
Y+I DVV+PLPG VIYP + ++E Y + D +++
Sbjct: 523 ------------------NYSIHDVVMPLPGFDVIYPKHKISEAYREMLTADNLDIDNMR 564
Query: 381 HNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEE 440
H ++++ S++G YR++ +P + WE++ Y D PL TD+D +
Sbjct: 565 HKIRDY---SLSGAYRKIIIRPQNVSWEVVAYDDPKIPLFNTDVDNL------------- 608
Query: 441 AVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALK 500
E K P V + S+GK ALK
Sbjct: 609 -------------------------------------EGKPPPVFA-----SEGKYRALK 626
Query: 501 LGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
+ +LP S YATMAIRE+LK TS+ LN
Sbjct: 627 MDFSLPPSTYATMAIREVLKMDTSIKNQTQLN 658
>gi|395539155|ref|XP_003771538.1| PREDICTED: pseudouridylate synthase 7 homolog [Sarcophilus
harrisii]
Length = 663
Score = 291 bits (745), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 176/512 (34%), Positives = 264/512 (51%), Gaps = 106/512 (20%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+WP+ G + F LYKENKDT +A+ ++SK L + P F + GTKDKR+++ Q + V K
Sbjct: 251 SWPKSRGSYCHFVLYKENKDTMDAINVLSKFLRVKPNIFSYMGTKDKRAITVQEIAVLKI 310
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
A +LA LNK L+ +LG+F Y K L LG+L GN+FT+ LR + ++ ++ + +SL
Sbjct: 311 TAQRLAHLNKCLMNFKLGNFSYQKNPLKLGELQGNQFTVVLRN-ITGTDHQVQQAMHSLK 369
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKE 201
GFINY+G+QRFG+ +VPT+ VG +L+ W V +IL PR G E+ + + RE + +
Sbjct: 370 EIGFINYYGMQRFGTTAVPTYQVGRAILQNCWDEVVDLILKPRPGAEKGYLVRCREEWAK 429
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKKCP-GNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
T D D L+KLP E +L+ L K N + A IPR R+MY+HSYQS++WN+
Sbjct: 430 TKDPDAALKKLPVKRCVEGQLLRGLAKYGLKNIVSAFGIIPRNNRLMYIHSYQSYVWNNM 489
Query: 261 ASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHP 320
S R++++G + V GDLV G + +++++E
Sbjct: 490 VSKRIEEYGLKP-VPGDLVLK---------GAI--------------ATYIEE------- 518
Query: 321 DGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESL 380
AD+NS Y+I DVV+PLPG VIYP + ++E Y + D +N+
Sbjct: 519 ------------ADVNS--YSIHDVVMPLPGFDVIYPKHKISEAYKDMLAADHLNIDNMK 564
Query: 381 HNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEE 440
H ++++ S++G YR++ +P + WE+++Y D PL TDLD +
Sbjct: 565 HKIRDY---SLSGAYRKIIIRPQNVSWEVVSYDDPRIPLFNTDLDNL------------- 608
Query: 441 AVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALK 500
E K P V + G K ALK
Sbjct: 609 -------------------------------------EGKPPPVFAAEG-----KYRALK 626
Query: 501 LGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
+ +LP S YATMAIRE+LK TS+ LN
Sbjct: 627 MDFSLPPSTYATMAIREVLKMDTSIKNQTQLN 658
>gi|355560896|gb|EHH17582.1| hypothetical protein EGK_14017 [Macaca mulatta]
gi|355747910|gb|EHH52407.1| hypothetical protein EGM_12842 [Macaca fascicularis]
Length = 661
Score = 291 bits (745), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 176/512 (34%), Positives = 261/512 (50%), Gaps = 106/512 (20%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+WP+ G + F LYKENKDT +A+ ++S+ L + P F + GTKDKR+++ Q + V K
Sbjct: 249 SWPKSRGSYCHFVLYKENKDTMDAINVLSRYLRVKPNIFSYMGTKDKRAITVQEIAVLKI 308
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
A +LA LNK L+ +LG+F Y K L LG+L GN FT+ LR + ++D ++ + NSL
Sbjct: 309 TAQRLAHLNKCLMNFKLGNFSYQKNPLKLGELQGNHFTVVLRN-ITGTDDQVQQAMNSLR 367
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKE 201
GFINY+G+QRFG+ +VPT+ VG +L+ W + +IL PR G E+ + K RE + +
Sbjct: 368 EIGFINYYGMQRFGTTAVPTYQVGRAILQNSWTEVMDLILKPRSGAEKGYLVKCREEWAK 427
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKKCP-GNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
T D LRKLP E +L+ L K N + A IPR R+MY+HSYQS++WN+
Sbjct: 428 TKDPAAALRKLPVKRCVEGQLLRGLSKYGMKNIVSAFGIIPRNNRLMYIHSYQSYVWNNM 487
Query: 261 ASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHP 320
S R++ +G + V GDLV KG +S+++E
Sbjct: 488 VSKRIEDYGLKP-VPGDLVL-KG----------------------ATASYIEE------- 516
Query: 321 DGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESL 380
D+N+ Y+I DVV+PLPG VIYP + + E Y + D +++
Sbjct: 517 ------------DDVNN--YSIHDVVMPLPGFDVIYPKHKIQEAYREMLTADNLDIDNMR 562
Query: 381 HNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEE 440
H ++++ S++G YR++ +P + WE++ Y D PL TD+D +
Sbjct: 563 HKIRDY---SLSGAYRKIIIRPQNVSWEVVAYDDPKIPLFNTDVDNL------------- 606
Query: 441 AVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALK 500
E K P V + S+GK ALK
Sbjct: 607 -------------------------------------EGKPPPVFA-----SEGKYRALK 624
Query: 501 LGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
+ +LP S YATMAIRE+LK TS+ LN
Sbjct: 625 MDFSLPPSTYATMAIREVLKMDTSIKNQTQLN 656
>gi|297289080|ref|XP_001089640.2| PREDICTED: pseudouridylate synthase 7 homolog isoform 2 [Macaca
mulatta]
Length = 704
Score = 291 bits (744), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 176/512 (34%), Positives = 261/512 (50%), Gaps = 106/512 (20%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+WP+ G + F LYKENKDT +A+ ++S+ L + P F + GTKDKR+++ Q + V K
Sbjct: 292 SWPKSRGSYCHFVLYKENKDTMDAINVLSRYLRVKPNIFSYMGTKDKRAITVQEIAVLKI 351
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
A +LA LNK L+ +LG+F Y K L LG+L GN FT+ LR + ++D ++ + NSL
Sbjct: 352 TAQRLAHLNKCLMNFKLGNFSYQKNPLKLGELQGNHFTVVLRN-ITGTDDQVQQAMNSLR 410
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKE 201
GFINY+G+QRFG+ +VPT+ VG +L+ W + +IL PR G E+ + K RE + +
Sbjct: 411 EIGFINYYGMQRFGTTAVPTYQVGRAILQNSWTEVMDLILKPRSGAEKGYLVKCREEWAK 470
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKKCP-GNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
T D LRKLP E +L+ L K N + A IPR R+MY+HSYQS++WN+
Sbjct: 471 TKDPAAALRKLPVKRCVEGQLLRGLSKYGMKNIVSAFGIIPRNNRLMYIHSYQSYVWNNM 530
Query: 261 ASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHP 320
S R++ +G + V GDLV KG +S+++E
Sbjct: 531 VSKRIEDYGLKP-VPGDLVL-KG----------------------ATASYIEE------- 559
Query: 321 DGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESL 380
D+N+ Y+I DVV+PLPG VIYP + + E Y + D +++
Sbjct: 560 ------------DDVNN--YSIHDVVMPLPGFDVIYPKHKIQEAYREMLTADNLDIDNMR 605
Query: 381 HNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEE 440
H ++++ S++G YR++ +P + WE++ Y D PL TD+D +
Sbjct: 606 HKIRDY---SLSGAYRKIIIRPQNVSWEVVAYDDPKIPLFNTDVDNL------------- 649
Query: 441 AVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALK 500
E K P V + S+GK ALK
Sbjct: 650 -------------------------------------EGKPPPVFA-----SEGKYRALK 667
Query: 501 LGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
+ +LP S YATMAIRE+LK TS+ LN
Sbjct: 668 MDFSLPPSTYATMAIREVLKMDTSIKNQTQLN 699
>gi|256269617|gb|EEU04899.1| Pus7p [Saccharomyces cerevisiae JAY291]
gi|323331559|gb|EGA72974.1| Pus7p [Saccharomyces cerevisiae AWRI796]
Length = 676
Score = 291 bits (744), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 190/542 (35%), Positives = 285/542 (52%), Gaps = 86/542 (15%)
Query: 3 RNSKKRK-ERGDNPFDSRGSENWPEQLGK-FLRFHLYKENKDTQEALGLISKMLGILPRS 60
RNS+ K E+ + D+ G ENW K F+ F L+KENKDT EA+ +I+K+L + R
Sbjct: 189 RNSRTNKQEKINQTRDANGVENWGYGPSKDFIHFTLHKENKDTMEAVNVITKLLRVPSRV 248
Query: 61 FGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFT 120
+AGTKD+R+V+ QRV++ K +L ALN+ L G+ +G++ + L LG L GN F
Sbjct: 249 IRYAGTKDRRAVTCQRVSISKIGLDRLNALNRTLKGMIIGNYNFSDASLNLGDLKGNEFV 308
Query: 121 ITLRGVV-----VDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWK 175
+ +R V V E+++ SL NGFINYFG+QRFG+ S+ TH +G LL WK
Sbjct: 309 VVIRDVTTGNSEVSLEEIVSNGCKSLSENGFINYFGMQRFGTFSISTHTIGRELLLSNWK 368
Query: 176 SAVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCL----KKCPG 231
A ++IL ++ + +AR+ + ET D L+++PR +AE A+L L K+ G
Sbjct: 369 KAAELILSDQDNVLPKSKEARKIWAETKDAALALKQMPRQCLAENALLYSLSNQRKEEDG 428
Query: 232 NYLQ-----ALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDT 286
Y + A+ IPR LR MYVH+YQS++WN AS R++ HG + +VVGDLV DT
Sbjct: 429 TYSENAYYTAIMKIPRNLRTMYVHAYQSYVWNSIASKRIELHGLK-LVVGDLVI----DT 483
Query: 287 EKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVV 346
++ ++ D DE D + + K VT DI+SGKYT++DVV
Sbjct: 484 SEKSPLIS----------GIDDEDFDE----DVREAQFIRAKAVTQEDIDSGKYTMEDVV 529
Query: 347 LPLPGSRVIYPMN-DVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDF 405
LP PG V+YP N ++ ++Y + + D ++ V++F S+ G+YR V QKP
Sbjct: 530 LPSPGFDVLYPSNEELKQLYVDILKADNMDPFNMRRKVRDF---SLAGSYRTVIQKPKSL 586
Query: 406 EWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIK 465
E+ ++ Y D ++ L TDLD + +
Sbjct: 587 EYRIIHYDDPSQQLVNTDLDILNNTR---------------------------------- 612
Query: 466 LSTENNEAACAKEVKQPHVESVCG---ADSQGKQMALKLGLTLPSSCYATMAIRELLKTS 522
AKE Q ++++ D G++ A+ L L +S YATMA+REL+K
Sbjct: 613 ----------AKESGQKYMKAKLDRYMPDKGGEKTAVVLKFQLGTSAYATMALRELMKLE 662
Query: 523 TS 524
TS
Sbjct: 663 TS 664
>gi|193787118|dbj|BAG52324.1| unnamed protein product [Homo sapiens]
Length = 661
Score = 290 bits (743), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 176/512 (34%), Positives = 260/512 (50%), Gaps = 106/512 (20%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+WP+ G + F LYKENKDT +A+ +SK L + P F + GTKDKR+++ Q + V K
Sbjct: 249 SWPKSRGSYCHFVLYKENKDTMDAINALSKYLRVKPNIFSYMGTKDKRAITVQEIAVLKI 308
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
A +LA LNK L+ +LG+F Y K L LG+L GN FT+ LR + ++D ++ + NSL
Sbjct: 309 TAQRLAHLNKCLMNFKLGNFSYQKNPLKLGELQGNHFTVVLRN-ITGTDDQVQQAMNSLK 367
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKE 201
GFINY+G+QRFG+ +VPT+ VG +L+ W + +IL PR G E+ + K RE + +
Sbjct: 368 EIGFINYYGMQRFGTTAVPTYQVGRAILQNSWTEVMDLILKPRSGAEKGYLVKCREEWAK 427
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKKCP-GNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
T D LRKLP E +L+ L K N + A IPR R+MY+HSYQS++WN+
Sbjct: 428 TKDPTAALRKLPVKRCVEGQLLRGLSKYGMKNIVSAFGIIPRNNRLMYIHSYQSYVWNNM 487
Query: 261 ASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHP 320
S R++ +G + V GDLV KG +++++E
Sbjct: 488 VSKRIEDYGLKP-VPGDLVL-KG----------------------ATATYIEE------- 516
Query: 321 DGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESL 380
D+N+ Y+I DVV+PLPG VIYP + + E Y + D +++
Sbjct: 517 ------------DDVNN--YSIHDVVMPLPGFDVIYPKHKIQEAYREMLTADNLDIDNMR 562
Query: 381 HNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEE 440
H ++++ S++G YR++ +P + WE++ Y D PL TD+D +
Sbjct: 563 HKIRDY---SLSGAYRKIIIRPQNVSWEVVAYDDPKIPLFNTDVDNL------------- 606
Query: 441 AVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALK 500
E K P V + S+GK ALK
Sbjct: 607 -------------------------------------EGKTPPVFA-----SEGKYRALK 624
Query: 501 LGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
+ +LP S YATMAIRE+LK TS+ LN
Sbjct: 625 MDFSLPPSTYATMAIREVLKMDTSIKNQTQLN 656
>gi|297289082|ref|XP_001089755.2| PREDICTED: pseudouridylate synthase 7 homolog isoform 3 [Macaca
mulatta]
Length = 712
Score = 290 bits (743), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 176/512 (34%), Positives = 261/512 (50%), Gaps = 106/512 (20%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+WP+ G + F LYKENKDT +A+ ++S+ L + P F + GTKDKR+++ Q + V K
Sbjct: 300 SWPKSRGSYCHFVLYKENKDTMDAINVLSRYLRVKPNIFSYMGTKDKRAITVQEIAVLKI 359
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
A +LA LNK L+ +LG+F Y K L LG+L GN FT+ LR + ++D ++ + NSL
Sbjct: 360 TAQRLAHLNKCLMNFKLGNFSYQKNPLKLGELQGNHFTVVLRN-ITGTDDQVQQAMNSLR 418
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKE 201
GFINY+G+QRFG+ +VPT+ VG +L+ W + +IL PR G E+ + K RE + +
Sbjct: 419 EIGFINYYGMQRFGTTAVPTYQVGRAILQNSWTEVMDLILKPRSGAEKGYLVKCREEWAK 478
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKKCP-GNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
T D LRKLP E +L+ L K N + A IPR R+MY+HSYQS++WN+
Sbjct: 479 TKDPAAALRKLPVKRCVEGQLLRGLSKYGMKNIVSAFGIIPRNNRLMYIHSYQSYVWNNM 538
Query: 261 ASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHP 320
S R++ +G + V GDLV KG +S+++E
Sbjct: 539 VSKRIEDYGLKP-VPGDLVL-KG----------------------ATASYIEE------- 567
Query: 321 DGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESL 380
D+N+ Y+I DVV+PLPG VIYP + + E Y + D +++
Sbjct: 568 ------------DDVNN--YSIHDVVMPLPGFDVIYPKHKIQEAYREMLTADNLDIDNMR 613
Query: 381 HNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEE 440
H ++++ S++G YR++ +P + WE++ Y D PL TD+D +
Sbjct: 614 HKIRDY---SLSGAYRKIIIRPQNVSWEVVAYDDPKIPLFNTDVDNL------------- 657
Query: 441 AVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALK 500
E K P V + S+GK ALK
Sbjct: 658 -------------------------------------EGKPPPVFA-----SEGKYRALK 675
Query: 501 LGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
+ +LP S YATMAIRE+LK TS+ LN
Sbjct: 676 MDFSLPPSTYATMAIREVLKMDTSIKNQTQLN 707
>gi|207340982|gb|EDZ69166.1| YOR243Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259149720|emb|CAY86524.1| Pus7p [Saccharomyces cerevisiae EC1118]
Length = 676
Score = 290 bits (743), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 190/542 (35%), Positives = 285/542 (52%), Gaps = 86/542 (15%)
Query: 3 RNSKKRK-ERGDNPFDSRGSENWPEQLGK-FLRFHLYKENKDTQEALGLISKMLGILPRS 60
RNS+ K E+ + D+ G ENW K F+ F L+KENKDT EA+ +I+K+L + R
Sbjct: 189 RNSRTNKQEKINQTRDANGVENWGYGPSKDFIHFTLHKENKDTMEAVNVITKLLRVPSRV 248
Query: 61 FGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFT 120
+AGTKD+R+V+ QRV++ K +L ALN+ L G+ +G++ + L LG L GN F
Sbjct: 249 IRYAGTKDRRAVTCQRVSISKIGLDRLNALNRTLKGMIIGNYNFSDASLNLGDLKGNEFV 308
Query: 121 ITLRGVV-----VDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWK 175
+ +R V V E+++ SL NGFINYFG+QRFG+ S+ TH +G LL WK
Sbjct: 309 VVIRDVTTGNSEVSLEEIVSNGCKSLSENGFINYFGMQRFGTFSISTHTIGRELLLSNWK 368
Query: 176 SAVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCL----KKCPG 231
A ++IL ++ + +AR+ + ET D L+++PR +AE A+L L K+ G
Sbjct: 369 KAAELILSDQDNVLPKSKEARKIWAETKDAALALKQMPRQCLAENALLYSLSNQRKEEDG 428
Query: 232 NYLQ-----ALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDT 286
Y + A+ IPR LR MYVH+YQS++WN AS R++ HG + +VVGDLV DT
Sbjct: 429 TYSENAYYTAIMKIPRNLRTMYVHAYQSYVWNSIASKRIELHGLK-LVVGDLVI----DT 483
Query: 287 EKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVV 346
++ ++ D DE D + + K VT DI+SGKYT++DVV
Sbjct: 484 SEKSPLIS----------GIDDEDFDE----DVREAQFIRAKAVTQEDIDSGKYTMEDVV 529
Query: 347 LPLPGSRVIYPMN-DVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDF 405
LP PG V+YP N ++ ++Y + + D ++ V++F S+ G+YR V QKP
Sbjct: 530 LPSPGFDVLYPSNEELKQLYVDILKADNMDPFNMRRKVRDF---SLAGSYRTVIQKPKSL 586
Query: 406 EWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIK 465
E+ ++ Y D ++ L TDLD + +
Sbjct: 587 EYRIIHYDDPSQQLVNTDLDILNNTR---------------------------------- 612
Query: 466 LSTENNEAACAKEVKQPHVESVCG---ADSQGKQMALKLGLTLPSSCYATMAIRELLKTS 522
AKE Q ++++ D G++ A+ L L +S YATMA+REL+K
Sbjct: 613 ----------AKESGQKYMKAKLDRYMPDKGGEKTAVVLKFQLGTSAYATMALRELMKLE 662
Query: 523 TS 524
TS
Sbjct: 663 TS 664
>gi|323352163|gb|EGA84700.1| Pus7p [Saccharomyces cerevisiae VL3]
Length = 676
Score = 290 bits (743), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 190/542 (35%), Positives = 285/542 (52%), Gaps = 86/542 (15%)
Query: 3 RNSKKRK-ERGDNPFDSRGSENWPEQLGK-FLRFHLYKENKDTQEALGLISKMLGILPRS 60
RNS+ K E+ + D+ G ENW K F+ F L+KENKDT EA+ +I+K+L + R
Sbjct: 189 RNSRTNKQEKINQTRDANGVENWGYGPSKDFIHFTLHKENKDTMEAVNVITKLLRVPSRV 248
Query: 61 FGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFT 120
+AGTKD+R+V+ QRV++ K +L ALN+ L G+ +G++ + L LG L GN F
Sbjct: 249 IRYAGTKDRRAVTCQRVSISKIGLDRLNALNRTLKGMIIGNYNFSDASLNLGDLKGNEFV 308
Query: 121 ITLRGVV-----VDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWK 175
+ +R V V E+++ SL NGFINYFG+QRFG+ S+ TH +G LL WK
Sbjct: 309 VVIRDVTTGNSEVSLEEIVSNGCKSLSENGFINYFGMQRFGTFSISTHTIGRELLLSNWK 368
Query: 176 SAVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCL----KKCPG 231
A ++IL ++ + +AR+ + ET D L+++PR +AE A+L L K+ G
Sbjct: 369 KAAELILSDQDNVLPKSKEARKIWAETKDAALALKQMPRQCLAENALLYSLSNQRKEEDG 428
Query: 232 NYLQ-----ALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDT 286
Y + A+ IPR LR MYVH+YQS++WN AS R++ HG + +VVGDLV DT
Sbjct: 429 TYSENAYYTAIMKIPRNLRTMYVHAYQSYVWNSIASKRIELHGLK-LVVGDLVI----DT 483
Query: 287 EKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVV 346
++ ++ D DE D + + K VT DI+SGKYT++DVV
Sbjct: 484 SEKSPLIS----------GIDDEDFDE----DVREAQFIRAKAVTQEDIDSGKYTMEDVV 529
Query: 347 LPLPGSRVIYPMN-DVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDF 405
LP PG V+YP N ++ ++Y + + D ++ V++F S+ G+YR V QKP
Sbjct: 530 LPSPGFDVLYPSNEELKQLYVDILKADNMDPFNMRRKVRDF---SLAGSYRTVIQKPKSL 586
Query: 406 EWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIK 465
E+ ++ Y D ++ L TDLD + +
Sbjct: 587 EYRIIHYDDPSQQLVNTDLDILNNTR---------------------------------- 612
Query: 466 LSTENNEAACAKEVKQPHVESVCG---ADSQGKQMALKLGLTLPSSCYATMAIRELLKTS 522
AKE Q ++++ D G++ A+ L L +S YATMA+REL+K
Sbjct: 613 ----------AKESGQKYMKAKLDRYMPDKGGEKTAVVLKFQLGTSAYATMALRELMKLE 662
Query: 523 TS 524
TS
Sbjct: 663 TS 664
>gi|151945329|gb|EDN63572.1| pseudouridine synthase [Saccharomyces cerevisiae YJM789]
Length = 676
Score = 290 bits (743), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 190/542 (35%), Positives = 285/542 (52%), Gaps = 86/542 (15%)
Query: 3 RNSKKRK-ERGDNPFDSRGSENWPEQLGK-FLRFHLYKENKDTQEALGLISKMLGILPRS 60
RNS+ K E+ + D+ G ENW K F+ F L+KENKDT EA+ +I+K+L + R
Sbjct: 189 RNSRTNKQEKINQTRDANGVENWGYGPSKDFIHFTLHKENKDTMEAVNVITKLLRVPSRV 248
Query: 61 FGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFT 120
+AGTKD+R+V+ QRV++ K +L ALN+ L G+ +G++ + L LG L GN F
Sbjct: 249 IRYAGTKDRRAVTCQRVSISKIGLDRLNALNRTLKGMIIGNYNFSDASLNLGDLKGNEFV 308
Query: 121 ITLRGVV-----VDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWK 175
+ +R V V E+++ SL NGFINYFG+QRFG+ S+ TH +G LL WK
Sbjct: 309 VVIRDVTTGNSEVSLEEIVSNGCKSLSENGFINYFGMQRFGTFSISTHTIGRELLLSNWK 368
Query: 176 SAVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCL----KKCPG 231
A ++IL ++ + +AR+ + ET D L+++PR +AE A+L L K+ G
Sbjct: 369 KAAELILSDQDNVLPKSKEARKIWAETKDAALALKQMPRQCLAENALLYSLSNQRKEEDG 428
Query: 232 NYLQ-----ALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDT 286
Y + A+ IPR LR MYVH+YQS++WN AS R++ HG + +VVGDLV DT
Sbjct: 429 TYSENAYYTAIMKIPRNLRTMYVHAYQSYVWNSIASKRIELHGLK-LVVGDLVI----DT 483
Query: 287 EKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVV 346
++ ++ D DE D + + K VT DI+SGKYT++DVV
Sbjct: 484 SEKSPLIS----------GIDDEDFDE----DVREAQFIRAKAVTQEDIDSGKYTMEDVV 529
Query: 347 LPLPGSRVIYPMN-DVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDF 405
LP PG V+YP N ++ ++Y + + D ++ V++F S+ G+YR V QKP
Sbjct: 530 LPSPGFDVLYPSNEELKQLYVDILKADNMDPFNMRRKVRDF---SLAGSYRTVIQKPKSL 586
Query: 406 EWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIK 465
E+ ++ Y D ++ L TDLD + +
Sbjct: 587 EYRIIHYDDPSQQLVNTDLDILNNTR---------------------------------- 612
Query: 466 LSTENNEAACAKEVKQPHVESVCG---ADSQGKQMALKLGLTLPSSCYATMAIRELLKTS 522
AKE Q ++++ D G++ A+ L L +S YATMA+REL+K
Sbjct: 613 ----------AKESGQKYMKAKLDRYMPDKGGEKTAVVLKFQLGTSAYATMALRELMKLE 662
Query: 523 TS 524
TS
Sbjct: 663 TS 664
>gi|349581396|dbj|GAA26554.1| K7_Pus7p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 676
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 189/542 (34%), Positives = 285/542 (52%), Gaps = 86/542 (15%)
Query: 3 RNSKKRK-ERGDNPFDSRGSENWPEQLGK-FLRFHLYKENKDTQEALGLISKMLGILPRS 60
RNS+ K E+ + D+ G ENW K F+ F L+KENKDT EA+ +I+K+L + R
Sbjct: 189 RNSRTNKQEKINQTRDANGVENWGYGPSKDFIHFTLHKENKDTMEAVNVITKLLRVPSRV 248
Query: 61 FGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFT 120
+AGTKD+R+V+ QR+++ K +L ALN+ L G+ +G++ + L LG L GN F
Sbjct: 249 IRYAGTKDRRAVTCQRISISKIGLDRLNALNRTLKGMIIGNYNFSDASLNLGDLKGNEFV 308
Query: 121 ITLRGVV-----VDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWK 175
+ +R V V E+++ SL NGFINYFG+QRFG+ S+ TH +G LL WK
Sbjct: 309 VVIRDVTTGNSEVSLEEIVSNGCKSLSENGFINYFGMQRFGTFSISTHTIGRELLLSNWK 368
Query: 176 SAVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCL----KKCPG 231
A ++IL ++ + +AR+ + ET D L+++PR +AE A+L L K+ G
Sbjct: 369 KAAELILSDQDNVLPKSKEARKIWAETKDAALALKQMPRQCLAENALLYSLSNQRKEEDG 428
Query: 232 NYLQ-----ALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDT 286
Y + A+ IPR LR MYVH+YQS++WN AS R++ HG + +VVGDLV DT
Sbjct: 429 TYSENAYYTAIMKIPRNLRTMYVHAYQSYVWNSIASKRIELHGLK-LVVGDLVI----DT 483
Query: 287 EKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVV 346
++ ++ D DE D + + K VT DI+SGKYT++DVV
Sbjct: 484 SEKSPLIS----------GIDDEDFDE----DVREAQFIRAKAVTQEDIDSGKYTMEDVV 529
Query: 347 LPLPGSRVIYPMN-DVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDF 405
LP PG V+YP N ++ ++Y + + D ++ V++F S+ G+YR V QKP
Sbjct: 530 LPSPGFDVLYPSNEELKQLYVDILKADNMDPFNMRRKVRDF---SLAGSYRTVIQKPKSL 586
Query: 406 EWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIK 465
E+ ++ Y D ++ L TDLD + +
Sbjct: 587 EYRIIHYEDPSQQLVNTDLDILNNTR---------------------------------- 612
Query: 466 LSTENNEAACAKEVKQPHVESVCG---ADSQGKQMALKLGLTLPSSCYATMAIRELLKTS 522
AKE Q ++++ D G++ A+ L L +S YATMA+REL+K
Sbjct: 613 ----------AKESGQKYMKAKLDRYMPDKGGEKTAVVLKFQLGTSAYATMALRELMKLE 662
Query: 523 TS 524
TS
Sbjct: 663 TS 664
>gi|344270831|ref|XP_003407245.1| PREDICTED: pseudouridylate synthase 7 homolog [Loxodonta africana]
Length = 662
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 176/512 (34%), Positives = 254/512 (49%), Gaps = 106/512 (20%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+WP+ G + F LYKENKDT +A+ ++SK L + P F + GTKDKR+++ Q + V K
Sbjct: 250 SWPKSRGSYCHFVLYKENKDTMDAINVLSKYLRVKPNIFSYMGTKDKRAITVQEIAVLKI 309
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
A +LA LNK L+ +LG+F Y K L LG+L GN FT+ LR + E V +A +SL
Sbjct: 310 TAQRLAHLNKCLMNFKLGNFSYQKNPLKLGELQGNHFTVVLRNITGTDEQVQQA-MHSLK 368
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKE 201
GFINY+G+QRFG+ +VPT+ VG +L+ W + +IL PR G E+ + K RE + +
Sbjct: 369 EIGFINYYGMQRFGTTAVPTYQVGRAILQNSWAEVMDLILKPRSGAEKGYLVKCREEWAK 428
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKKCP-GNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
T D L+KLP E +L+ L K N + A IPR R+MY+HSYQS++WN+
Sbjct: 429 TKDPAAALKKLPVKRCVEGQLLRGLSKYGMKNIVSAFGIIPRNNRLMYIHSYQSYVWNNM 488
Query: 261 ASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHP 320
S R++++G + V GDLV T E G VN
Sbjct: 489 VSKRIEEYGLKP-VPGDLVLKGATATYIEEGDVN-------------------------- 521
Query: 321 DGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESL 380
Y+I DVV+PLPG VIYP + ++E Y + D +++
Sbjct: 522 ------------------NYSIHDVVMPLPGFDVIYPKHKISEAYREMLAADSLDIDNMR 563
Query: 381 HNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEE 440
H ++++ S++G YR++ +P + WE++ Y D PL TD+D +
Sbjct: 564 HKIRDY---SLSGAYRKIIIRPQNVSWEVVAYDDPKIPLFNTDVDNL------------- 607
Query: 441 AVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALK 500
E K P V + S+GK ALK
Sbjct: 608 -------------------------------------EGKPPPVFA-----SEGKYKALK 625
Query: 501 LGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
+ +LP S YATMAIRE+LK TS+ LN
Sbjct: 626 MDFSLPPSTYATMAIREVLKMDTSIKNQTQLN 657
>gi|426227563|ref|XP_004007887.1| PREDICTED: pseudouridylate synthase 7 homolog [Ovis aries]
Length = 711
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 174/512 (33%), Positives = 256/512 (50%), Gaps = 106/512 (20%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+WP+ G + F LYKENKDT +A+ L+SK L + P F + GTKDKR+++ Q + V K
Sbjct: 299 SWPKSRGSYCHFVLYKENKDTMDAINLLSKYLRVKPNIFSYMGTKDKRAITVQEIAVLKI 358
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
A +LA LNK L+ +LG+F Y K L LG+L GN FT+ LR + +++ ++ + NSL
Sbjct: 359 TAQRLAHLNKCLMNFKLGNFSYQKNPLKLGELQGNHFTVVLRN-ITGTDNQVEQAMNSLK 417
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKE 201
GFINY+G+QRFG+ +VPT+ VG +L+ W + +IL PR G E+ + K RE + +
Sbjct: 418 EIGFINYYGMQRFGTTAVPTYQVGRAILQNSWTEVMDLILKPRSGAEKGYLVKCREEWAK 477
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKKCP-GNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
T D LRKLP E +L+ L K N + A IPR R+MY+HSYQS++WN+
Sbjct: 478 TKDPAAALRKLPVKRCVEGQLLRGLSKYGMKNIVSAFGIIPRNNRLMYIHSYQSYVWNNM 537
Query: 261 ASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHP 320
S R+ ++G + V GDLV T
Sbjct: 538 VSKRIDEYGLKP-VPGDLVLKGATAT---------------------------------- 562
Query: 321 DGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESL 380
+ D+N+ Y+I DVV+PLPG VIYP + ++E Y + D +++
Sbjct: 563 --------FIEEDDVNN--YSIHDVVMPLPGFDVIYPKHKISEAYREMLTADNLDIDNMR 612
Query: 381 HNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEE 440
H ++++ S++G YR++ +P + WE++ Y D PL TD+D +
Sbjct: 613 HKIRDY---SLSGAYRKIIIRPQNVSWEVVAYDDPKIPLFNTDVDNL------------- 656
Query: 441 AVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALK 500
E K P V + S+GK ALK
Sbjct: 657 -------------------------------------EGKPPPVFA-----SEGKYRALK 674
Query: 501 LGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
+ +LP S YATMAIRE+LK TS+ LN
Sbjct: 675 MDFSLPPSTYATMAIREVLKMDTSIKNQTQLN 706
>gi|366989703|ref|XP_003674619.1| hypothetical protein NCAS_0B01610 [Naumovozyma castellii CBS 4309]
gi|342300483|emb|CCC68245.1| hypothetical protein NCAS_0B01610 [Naumovozyma castellii CBS 4309]
Length = 676
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 192/529 (36%), Positives = 270/529 (51%), Gaps = 86/529 (16%)
Query: 17 DSRGSENWPEQLGK-FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQ 75
D+ G ENW K F+ F LYKENKDT E + +I+++L I + FAG KD+R+V+ Q
Sbjct: 202 DANGVENWGYGPNKEFIHFTLYKENKDTMETVNIITRLLRIPSKLIRFAGNKDRRAVTCQ 261
Query: 76 RVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSE---- 131
R+ + K +L ALN+ L G+ +GD+ + L LG L GN F I +R V V+
Sbjct: 262 RLCISKISIDRLNALNRTLRGMTIGDYKFEDGNLSLGDLQGNEFVIVIRDVKVNKSSTLS 321
Query: 132 --DVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGER 189
+++ SL NGFINYFG+QRFG+ S+ TH +G LL W+ AV++IL +E
Sbjct: 322 LPEILDQGCKSLTDNGFINYFGMQRFGTFSISTHEIGKQLLLSNWEKAVELILSDQENVL 381
Query: 190 NEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCL----KKCPGN-----YLQALKAI 240
+AR+ + +T D L+K+PR +AE +IL L K+ GN Y A+ I
Sbjct: 382 PISKEARQIWAQTKDAALALKKMPRQSIAENSILHSLSNQKKEDDGNYSSFAYYSAIMQI 441
Query: 241 PRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYE 300
PR LR MYVH+YQSF+WN S R++ HG +VVGDLV NP E
Sbjct: 442 PRNLRTMYVHAYQSFVWNAITSKRIELHGL-SLVVGDLVIDN-----------NPN-EQV 488
Query: 301 SSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMN- 359
S D D L E D + K +T DI+SGKYTIDDVVLP PG ++YP N
Sbjct: 489 PSADTDSDDELRE----DLREDEFIRAKPLTQEDIDSGKYTIDDVVLPTPGFDILYPTNE 544
Query: 360 DVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPL 419
++ ++Y + KD ++ + V+EF SM G+YR + QKP + E++++ Y + L
Sbjct: 545 ELRQLYVDIMSKDDMDPFDMRRKVREF---SMAGSYRNIIQKPKELEYKVIHYNTPTQQL 601
Query: 420 AETDLD----KIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAAC 475
TDL+ KI KA N +K D + +
Sbjct: 602 VNTDLEILNSKIGKA--------------NGQKYFKDKLDR------------------- 628
Query: 476 AKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTS 524
D G + A+ L L +S YATMA+REL+K TS
Sbjct: 629 ------------YMPDKGGDKTAVVLKFQLGTSAYATMALRELMKVETS 665
>gi|390466887|ref|XP_002751765.2| PREDICTED: pseudouridylate synthase 7 homolog [Callithrix jacchus]
Length = 664
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 173/512 (33%), Positives = 257/512 (50%), Gaps = 106/512 (20%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+WP+ G + F LYKENKDT +A+ ++S+ L + P F + GTKDKR+++ Q + V K
Sbjct: 252 SWPKSRGSYCHFVLYKENKDTMDAINVLSRYLRVKPNIFSYMGTKDKRAITVQEIAVLKI 311
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
A +LA LNK L+ +LG+F Y K+ L LG+L GN FT+ LR + ++D ++ + NSL
Sbjct: 312 TAQRLAHLNKCLMNFKLGNFSYQKKPLKLGELQGNHFTVVLRN-ITGTDDQVQQAMNSLK 370
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKE 201
GFINY+G+QRFG+ +VPT+ VG +L+ W + +IL PR G E+ + K RE + +
Sbjct: 371 EIGFINYYGMQRFGTTAVPTYQVGRAILQNSWIEVMDLILKPRSGAEKGYLVKCREEWAK 430
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKKCP-GNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
T D LRKLP E +L+ L K N + A IPR R+MY+HSYQS++WN+
Sbjct: 431 TKDPTAALRKLPVKRCVEGQLLRGLSKYGMKNIVSAFGLIPRNNRLMYIHSYQSYVWNNM 490
Query: 261 ASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHP 320
S R++ +G + GDLV L P +
Sbjct: 491 VSKRIEDYGLKP-APGDLV----------LKGATPTY----------------------- 516
Query: 321 DGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESL 380
+ D+N+ Y+I DVV+PLPG VIYP + + E Y + D +++
Sbjct: 517 ---------IEEEDVNN--YSIHDVVMPLPGFDVIYPKHKIQEAYREMLTADNLDIDNMR 565
Query: 381 HNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEE 440
H ++++ S++G YR++ +P + WE++ Y D PL TD+D +
Sbjct: 566 HKIRDY---SLSGAYRKIIIRPQNVSWEVVAYDDPKIPLFNTDVDNL------------- 609
Query: 441 AVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALK 500
E K P V + S+GK ALK
Sbjct: 610 -------------------------------------EGKPPPVFA-----SEGKYRALK 627
Query: 501 LGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
+ +LP S YATMAIRE+LK TS+ LN
Sbjct: 628 MDFSLPPSTYATMAIREVLKMDTSIKNQTQLN 659
>gi|351706029|gb|EHB08948.1| Pseudouridylate synthase 7-like protein [Heterocephalus glaber]
Length = 656
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 175/512 (34%), Positives = 261/512 (50%), Gaps = 106/512 (20%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+WP+ G + F LYKENKDT +A+ ++SK L + P F + GTKDKR+++ Q + V K
Sbjct: 244 SWPKSRGSYCHFVLYKENKDTMDAINVLSKYLRVKPNIFSYMGTKDKRAITVQEIAVLKI 303
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
A +LA LNK L+ +LG+F Y K L LG+L GN FT+ LR + ++D ++ + NSL
Sbjct: 304 SAQRLAHLNKCLMNFKLGNFSYQKTPLKLGELQGNHFTVVLRN-ITGTDDQVQQAMNSLK 362
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKE 201
GFINY+G+QRFG+ +VPT+ VG +L+ W + +IL PR G E+ + K RE + +
Sbjct: 363 EIGFINYYGMQRFGTTAVPTYQVGRAILQNSWTEVMDLILKPRSGAEKGYLVKCREEWAK 422
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKKCP-GNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
T D L+KLP E +L+ L K N + A IPR R+MY+HSYQS++WN+
Sbjct: 423 TKDPTAALKKLPVKRCVEGQLLRGLSKYGMKNIVSAFGIIPRNNRLMYIHSYQSYVWNNM 482
Query: 261 ASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHP 320
S R++ +G + V GDLV KG +++++E
Sbjct: 483 VSKRIEDYGLKP-VPGDLVL-KG----------------------ATATYIEE------- 511
Query: 321 DGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESL 380
DI + Y+I DVV+PLPG VIYP + ++E Y + D +++
Sbjct: 512 ------------EDITN--YSIHDVVMPLPGFDVIYPKHKISEAYREMLTMDNLDIDNMR 557
Query: 381 HNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEE 440
H ++++ S++G YR++ +P + WE++ Y D PL TD+D +
Sbjct: 558 HKIRDY---SLSGAYRKIIIRPQNVSWEVVVYDDPKIPLFNTDVDNL------------- 601
Query: 441 AVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALK 500
E K P V + S+GK ALK
Sbjct: 602 -------------------------------------EGKPPPVFA-----SEGKYRALK 619
Query: 501 LGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
+ +LP S YATMAIRE+LK TS+ LN
Sbjct: 620 MDFSLPPSTYATMAIREVLKMDTSIKNQTQLN 651
>gi|410952106|ref|XP_003982728.1| PREDICTED: pseudouridylate synthase 7 homolog [Felis catus]
Length = 662
Score = 289 bits (739), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 178/512 (34%), Positives = 258/512 (50%), Gaps = 106/512 (20%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+WP+ G + F LYKENKDT +A+ ++SK L + P F + GTKDKR+++ Q + V K
Sbjct: 250 SWPKSRGSYCHFVLYKENKDTMDAINVLSKYLRVKPNIFSYMGTKDKRAITVQEIAVLKI 309
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
A +LA LNK L+ +LG+F Y K L LG+L GN FT+ LR + E V +A NSL
Sbjct: 310 TAQRLAHLNKCLMNFKLGNFSYQKNPLKLGELQGNHFTVVLRNITGTDEQVQQA-MNSLK 368
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKE 201
GFINY+G+QRFG+ +VPT+ VG +L+ W + +IL PR G E+ + K RE + +
Sbjct: 369 EIGFINYYGMQRFGTTAVPTYQVGRAILQNSWTEVMDLILKPRSGAEKGYLVKCREEWAK 428
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKKC-PGNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
T D LRKLP E +L+ L K N + A IPR R+MY+HSYQS++WN+
Sbjct: 429 TKDPAAALRKLPVKRCVEGQLLRGLSKYGMKNIVSAFGIIPRNNRLMYIHSYQSYVWNNM 488
Query: 261 ASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHP 320
S R++++G V GDLV KG ++++DE
Sbjct: 489 VSKRIEEYGLRP-VPGDLVL-KG----------------------ATATYVDE------- 517
Query: 321 DGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESL 380
D+N+ Y+I DVV+PLPG VIYP + ++E Y + D +++
Sbjct: 518 ------------EDVNN--YSIHDVVMPLPGFDVIYPKHKISEAYREMLTADNLDIDNMR 563
Query: 381 HNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEE 440
H ++++ S++G YR++ +P + WE++ Y D PL TD+D +
Sbjct: 564 HKIRDY---SLSGAYRKIIIRPQNVSWEVVAYDDPKIPLFNTDVDNL------------- 607
Query: 441 AVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALK 500
E K P V + G K ALK
Sbjct: 608 -------------------------------------EGKPPPVFASEG-----KYRALK 625
Query: 501 LGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
+ +LP S YATMAIRE+LK TS+ LN
Sbjct: 626 MDFSLPPSTYATMAIREVLKMDTSIKNQTQLN 657
>gi|219519536|gb|AAI45317.1| Pus7 protein [Mus musculus]
Length = 666
Score = 288 bits (737), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 175/512 (34%), Positives = 251/512 (49%), Gaps = 106/512 (20%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+WP+ G + F LYKENKDT +A+ ++SK L + P F + GTKDKR+++ Q + V K
Sbjct: 254 SWPKSRGSYCHFVLYKENKDTMDAINVLSKYLRVKPNIFSYMGTKDKRAITVQEIAVLKI 313
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
A +LA LNK L+ ++LG+F Y K L LG L GN FT+ LR + E V +A SL
Sbjct: 314 SAQRLAHLNKCLMNLKLGNFSYQKTPLKLGALQGNHFTVVLRNITGTDEQVQQA-MQSLR 372
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKE 201
GFINY+G+QRFG+ +VPT+ VG +L+ W + +IL PR G E+ + K RE + +
Sbjct: 373 ETGFINYYGMQRFGTTAVPTYQVGRAILQNSWTEVMDLILKPRSGAEKGYLVKCREEWAK 432
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKKCP-GNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
T D L+KLP E +L+ L + N + A IPR R+MY+HSYQS++WN
Sbjct: 433 TKDPASALKKLPVKRCVEGQLLRGLSRYGMKNIVSAFGIIPRNNRLMYIHSYQSYVWNTM 492
Query: 261 ASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHP 320
S R++++G V GDLV T Y +D D+
Sbjct: 493 VSRRIEEYGLRP-VPGDLVLKGATPT------------YIEEDDVDN------------- 526
Query: 321 DGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESL 380
Y+I DVV+PLPG VIYP + ++E Y + D +++
Sbjct: 527 -------------------YSIHDVVMPLPGFDVIYPKHKISEAYREMLAADNLDIDNMR 567
Query: 381 HNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEE 440
H ++++ S++G YRR+ +P WE++ Y D PL TD+D +
Sbjct: 568 HTIRDY---SLSGAYRRIIIRPQSVSWEVVAYDDPKIPLFNTDVDNL------------- 611
Query: 441 AVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALK 500
E K P V + S+GK ALK
Sbjct: 612 -------------------------------------EGKPPPVFA-----SEGKYRALK 629
Query: 501 LGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
+ +LP S YATMAIRE+LK TS+ LN
Sbjct: 630 MDFSLPPSTYATMAIREVLKMDTSIKNQTQLN 661
>gi|89111935|ref|NP_848490.2| pseudouridylate synthase 7 homolog [Mus musculus]
gi|74144381|dbj|BAE36044.1| unnamed protein product [Mus musculus]
gi|112180773|gb|AAH08544.2| Pseudouridylate synthase 7 homolog (S. cerevisiae) [Mus musculus]
gi|187953951|gb|AAI38534.1| Pseudouridylate synthase 7 homolog (S. cerevisiae) [Mus musculus]
Length = 660
Score = 288 bits (737), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 175/512 (34%), Positives = 251/512 (49%), Gaps = 106/512 (20%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+WP+ G + F LYKENKDT +A+ ++SK L + P F + GTKDKR+++ Q + V K
Sbjct: 248 SWPKSRGSYCHFVLYKENKDTMDAINVLSKYLRVKPNIFSYMGTKDKRAITVQEIAVLKI 307
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
A +LA LNK L+ ++LG+F Y K L LG L GN FT+ LR + E V +A SL
Sbjct: 308 SAQRLAHLNKCLMNLKLGNFSYQKTPLKLGALQGNHFTVVLRNITGTDEQVQQA-MQSLR 366
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKE 201
GFINY+G+QRFG+ +VPT+ VG +L+ W + +IL PR G E+ + K RE + +
Sbjct: 367 ETGFINYYGMQRFGTTAVPTYQVGRAILQNSWTEVMDLILKPRSGAEKGYLVKCREEWAK 426
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKKCP-GNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
T D L+KLP E +L+ L + N + A IPR R+MY+HSYQS++WN
Sbjct: 427 TKDPASALKKLPVKRCVEGQLLRGLSRYGMKNIVSAFGIIPRNNRLMYIHSYQSYVWNTM 486
Query: 261 ASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHP 320
S R++++G V GDLV T Y +D D+
Sbjct: 487 VSRRIEEYGLRP-VPGDLVLKGATPT------------YIEEDDVDN------------- 520
Query: 321 DGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESL 380
Y+I DVV+PLPG VIYP + ++E Y + D +++
Sbjct: 521 -------------------YSIHDVVMPLPGFDVIYPKHKISEAYREMLAADNLDIDNMR 561
Query: 381 HNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEE 440
H ++++ S++G YRR+ +P WE++ Y D PL TD+D +
Sbjct: 562 HTIRDY---SLSGAYRRIIIRPQSVSWEVVAYDDPKIPLFNTDVDNL------------- 605
Query: 441 AVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALK 500
E K P V + S+GK ALK
Sbjct: 606 -------------------------------------EGKPPPVFA-----SEGKYRALK 623
Query: 501 LGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
+ +LP S YATMAIRE+LK TS+ LN
Sbjct: 624 MDFSLPPSTYATMAIREVLKMDTSIKNQTQLN 655
>gi|50511165|dbj|BAD32568.1| mKIAA1897 protein [Mus musculus]
Length = 717
Score = 288 bits (737), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 175/512 (34%), Positives = 251/512 (49%), Gaps = 106/512 (20%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+WP+ G + F LYKENKDT +A+ ++SK L + P F + GTKDKR+++ Q + V K
Sbjct: 305 SWPKSRGSYCHFVLYKENKDTMDAINVLSKYLRVKPNIFSYMGTKDKRAITVQEIAVLKI 364
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
A +LA LNK L+ ++LG+F Y K L LG L GN FT+ LR + E V +A SL
Sbjct: 365 SAQRLAHLNKCLMNLKLGNFSYQKTPLKLGALQGNHFTVVLRNITGTDEQVQQA-MQSLR 423
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKE 201
GFINY+G+QRFG+ +VPT+ VG +L+ W + +IL PR G E+ + K RE + +
Sbjct: 424 ETGFINYYGMQRFGTTAVPTYQVGRAILQNSWTEVMDLILKPRSGAEKGYLVKCREEWAK 483
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKKCP-GNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
T D L+KLP E +L+ L + N + A IPR R+MY+HSYQS++WN
Sbjct: 484 TKDPASALKKLPVKRCVEGQLLRGLSRYGMKNIVSAFGIIPRNNRLMYIHSYQSYVWNTM 543
Query: 261 ASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHP 320
S R++++G V GDLV T Y +D D+
Sbjct: 544 VSRRIEEYGLRP-VPGDLVLKGATPT------------YIEEDDVDN------------- 577
Query: 321 DGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESL 380
Y+I DVV+PLPG VIYP + ++E Y + D +++
Sbjct: 578 -------------------YSIHDVVMPLPGFDVIYPKHKISEAYREMLAADNLDIDNMR 618
Query: 381 HNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEE 440
H ++++ S++G YRR+ +P WE++ Y D PL TD+D +
Sbjct: 619 HTIRDY---SLSGAYRRIIIRPQSVSWEVVAYDDPKIPLFNTDVDNL------------- 662
Query: 441 AVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALK 500
E K P V + S+GK ALK
Sbjct: 663 -------------------------------------EGKPPPVFA-----SEGKYRALK 680
Query: 501 LGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
+ +LP S YATMAIRE+LK TS+ LN
Sbjct: 681 MDFSLPPSTYATMAIREVLKMDTSIKNQTQLN 712
>gi|403257079|ref|XP_003921164.1| PREDICTED: pseudouridylate synthase 7 homolog isoform 1 [Saimiri
boliviensis boliviensis]
Length = 661
Score = 288 bits (737), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 174/512 (33%), Positives = 256/512 (50%), Gaps = 106/512 (20%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+WP+ G + F LYKENKDT +A+ ++S+ L + P F + GTKDKR+++ Q + V K
Sbjct: 249 SWPKSRGSYCHFVLYKENKDTMDAINVLSRYLRVKPNIFSYMGTKDKRAITVQEIAVLKI 308
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
A +LA LNK L+ +LG+F Y K+ L LG+L GN FT+ LR + E V +A NSL
Sbjct: 309 TAQRLAHLNKCLMNFKLGNFSYQKKPLKLGELQGNHFTVVLRNITGTDEQVQQA-MNSLK 367
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKE 201
GFINY+G+QRFG+ +VPT+ VG +L+ W + +IL PR G E+ + K RE + +
Sbjct: 368 EIGFINYYGMQRFGTTAVPTYQVGRAILQNSWTEVMDLILKPRSGAEKGYLVKCREEWAK 427
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKKCP-GNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
T D LRKLP E +L+ L K N + A IPR R+MY+HSYQS++WN+
Sbjct: 428 TKDPTAALRKLPVKRCVEGQLLRGLSKYGMKNIVSAFGIIPRNNRLMYIHSYQSYVWNNM 487
Query: 261 ASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHP 320
S R++ +G + V GDLV L P +
Sbjct: 488 VSKRIEDYGLKP-VPGDLV----------LKGATPTY----------------------- 513
Query: 321 DGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESL 380
+ D+N+ Y+I DVV+PLPG V+YP + + E Y + D +++
Sbjct: 514 ---------IEEDDVNN--YSIHDVVMPLPGFDVVYPKHKIREAYREMLTADNLDIDNMR 562
Query: 381 HNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEE 440
H ++++ S++G YR++ +P + W+++ Y D PL TD+D +
Sbjct: 563 HKIRDY---SLSGAYRKIIIRPQNVSWDVVAYDDPKIPLFNTDVDNL------------- 606
Query: 441 AVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALK 500
E K P V + S+GK ALK
Sbjct: 607 -------------------------------------EGKPPPVFA-----SEGKYRALK 624
Query: 501 LGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
+ +LP S YATMAIRE+LK TS+ LN
Sbjct: 625 MDFSLPPSTYATMAIREVLKMDTSIKNQTQLN 656
>gi|323335449|gb|EGA76735.1| Pus7p [Saccharomyces cerevisiae Vin13]
Length = 676
Score = 288 bits (737), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 189/543 (34%), Positives = 284/543 (52%), Gaps = 86/543 (15%)
Query: 2 GRNSKKRK-ERGDNPFDSRGSENWPEQLGK-FLRFHLYKENKDTQEALGLISKMLGILPR 59
RNS+ K E+ + D+ G ENW K F+ F L+KENKDT EA+ +I+K+L + R
Sbjct: 188 NRNSRTNKQEKINQTRDANGVENWGYGPSKDFIHFTLHKENKDTMEAVNVITKLLRVPSR 247
Query: 60 SFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRF 119
+AGTKD+R+V+ QRV++ K +L ALN+ L G+ +G++ + L LG L GN F
Sbjct: 248 VIRYAGTKDRRAVTCQRVSISKIGLDRLNALNRTLKGMIIGNYNFSDASLNLGDLKGNEF 307
Query: 120 TITLRGVV-----VDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEW 174
+ +R V V E+++ SL NGFINYFG+QRFG+ S+ TH +G LL W
Sbjct: 308 VVVIRDVTTGNSEVSLEEIVSNGCKSLSENGFINYFGMQRFGTFSISTHTIGRELLLSNW 367
Query: 175 KSAVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCL----KKCP 230
K A ++IL ++ + +AR+ + ET D L+++PR +AE A+L L K+
Sbjct: 368 KKAAELILSDQDNVLPKSKEARKIWAETKDAALALKQMPRQCLAENALLYSLSNQRKEED 427
Query: 231 GNYLQ-----ALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDD 285
G Y + A+ IPR LR MYVH+YQS++WN AS R++ HG + +VVGDLV D
Sbjct: 428 GTYSENAYYTAIMKIPRNLRTMYVHAYQSYVWNSIASKRIELHGLK-LVVGDLVI----D 482
Query: 286 TEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDV 345
T ++ ++ D DE D + + K VT DI+S KYT++DV
Sbjct: 483 TSEKSPLIS----------GIDDEDFDE----DVREAQFIRAKAVTQEDIDSXKYTMEDV 528
Query: 346 VLPLPGSRVIYPMN-DVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMD 404
VLP PG V+YP N ++ ++Y + + D ++ V++F S+ G+YR V QKP
Sbjct: 529 VLPSPGFDVLYPSNEELKQLYVDILKADNMDPFNMRRKVRDF---SLAGSYRTVIQKPKS 585
Query: 405 FEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDI 464
E+ ++ Y D ++ L TDLD + +
Sbjct: 586 LEYRIIHYDDPSQQLVNTDLDILNNTR--------------------------------- 612
Query: 465 KLSTENNEAACAKEVKQPHVESVCG---ADSQGKQMALKLGLTLPSSCYATMAIRELLKT 521
AKE Q ++++ D G++ A+ L L +S YATMA+REL+K
Sbjct: 613 -----------AKESGQKYMKAKLDRYMPDKGGEKTAVVLKFQLGTSAYATMALRELMKL 661
Query: 522 STS 524
TS
Sbjct: 662 ETS 664
>gi|392592769|gb|EIW82095.1| tRNA pseudouridine synthase D [Coniophora puteana RWD-64-598 SS2]
Length = 847
Score = 288 bits (736), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 186/533 (34%), Positives = 262/533 (49%), Gaps = 100/533 (18%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ-------- 82
++ F L K N+DTQ+AL IS+ + + AGTKDKR V+ QRV++ +
Sbjct: 353 YIHFTLQKTNRDTQDALAYISRTIHCNVKDLSVAGTKDKRGVTVQRVSLRRGNRSVEDIW 412
Query: 83 -------RASKLAALNKR-LIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVI 134
R S L++R G+R+ D Y K GL LG L GN F ITLRGV VDS + I
Sbjct: 413 KAAHQLGRRSMEEVLSQRGERGVRIADLNYRKAGLELGMLKGNAFVITLRGVQVDSMETI 472
Query: 135 KASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISK 194
S + L GFINY+G+QRFG+ +VPTH +G L+ +W AV +IL R GE ++
Sbjct: 473 DKSLSVLKHKGFINYYGMQRFGTAAVPTHSIGLAFLKSDWHKAVSLILQKRPGEHPDVEA 532
Query: 195 AREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPG---NYLQALKAIPRTLRMMYVHS 251
AR+ + D+D L +PR +VAER +L+ KK G N + AL IPR LR+MY+H+
Sbjct: 533 ARDAWLTDGDLDRALALMPRRVVAERCVLESFKKQKGDTRNAMGALSTIPRNLRLMYIHA 592
Query: 252 YQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSND---ADDS 308
YQS++WN S R++ HG + V GDLVF E G V E E D D+
Sbjct: 593 YQSYVWNAIVSERIRIHGCDKPVPGDLVFTA------EGGKV---LESEGEGDEMRVDED 643
Query: 309 SHLDEVPETDHPDGRHNL---------VKTVTAADINSGKYTIDDVVLPLPGSRVIYPMN 359
D+ E R VKT+T +D++ +Y+I DV++PLPG V YP
Sbjct: 644 LAADQTKEPASSRERKRAARAKWEPPSVKTLTESDVD--QYSIFDVIMPLPGRDVSYPGG 701
Query: 360 DVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPL 419
+ + Y DG++ + KE++ + G+YR++ Q P D W +L Y D + PL
Sbjct: 702 KLGDRYREFLVADGLDPDNFIRKQKEYT---LNGSYRKILQLPKDISWSVLKYTDPDVPL 758
Query: 420 AETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEV 479
A+ D E+A+ G
Sbjct: 759 AQAD---------------EDALLG----------------------------------F 769
Query: 480 KQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
P V D GK +AL++ LTL ++ YATMA+RE+ K TS F L
Sbjct: 770 DAPAV------DENGKFLALQVRLTLGTAAYATMALREVTKMDTSSHFQSGLT 816
>gi|62859873|ref|NP_001016884.1| pseudouridylate synthase 7 homolog [Xenopus (Silurana) tropicalis]
gi|89272883|emb|CAJ81290.1| novel protein [Xenopus (Silurana) tropicalis]
Length = 649
Score = 288 bits (736), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 158/407 (38%), Positives = 226/407 (55%), Gaps = 51/407 (12%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+WP+ G + F LYKENKDT +A+ ++SK L I P F + GTKDKR+++ Q + V K
Sbjct: 237 SWPKARGSYCHFVLYKENKDTMDAINVLSKFLRIKPNIFSYMGTKDKRAITVQEIAVLKI 296
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
A +LA LNK L+ +LG+F Y K L LG+L GN FT+ LR V SE +++A SL
Sbjct: 297 TAQRLAHLNKCLMNFKLGNFSYQKNPLKLGELQGNHFTVVLRNVTGTSEQIVQA-MTSLR 355
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKE 201
GFINY+G+QRFG+ +VPT+ VG +L+ W V +IL PR G E+ + + RE + +
Sbjct: 356 DIGFINYYGMQRFGTTAVPTYQVGRAILQSNWNEMVDLILKPRPGAEKGYLVQCREEWAK 415
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKKCP-GNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
T D + LRKLP E +L+ L N + A IPR R+MY+HSYQS++WN+
Sbjct: 416 TKDPEAALRKLPVKRCVEGQLLRGLSMYGLKNIVSAFGIIPRNNRLMYIHSYQSYVWNNM 475
Query: 261 ASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHP 320
S R++++G + VV GDLV KGD
Sbjct: 476 VSKRIEEYGLK-VVPGDLVL-KGD------------------------------------ 497
Query: 321 DGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESL 380
V + N YTI+D+V+PLPG VIYP + VA Y + D +++
Sbjct: 498 -------TAVPVEEGNVDSYTINDIVMPLPGFDVIYPKHKVAAAYEEILAADNLDIKNMR 550
Query: 381 HNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKI 427
H VK++ S+ G YR++ +P D WE+++Y D PL +TDLDK+
Sbjct: 551 HRVKDY---SLAGAYRKIVIRPQDVSWEVVSYDDPKIPLVQTDLDKL 594
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 28/41 (68%)
Query: 492 SQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
++GK ALK+ +LP S YATMAIRE+LK TS+ LN
Sbjct: 604 TEGKYRALKMEFSLPPSTYATMAIREVLKMDTSIKNQTQLN 644
>gi|403257081|ref|XP_003921165.1| PREDICTED: pseudouridylate synthase 7 homolog isoform 2 [Saimiri
boliviensis boliviensis]
Length = 667
Score = 288 bits (736), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 174/512 (33%), Positives = 256/512 (50%), Gaps = 106/512 (20%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+WP+ G + F LYKENKDT +A+ ++S+ L + P F + GTKDKR+++ Q + V K
Sbjct: 255 SWPKSRGSYCHFVLYKENKDTMDAINVLSRYLRVKPNIFSYMGTKDKRAITVQEIAVLKI 314
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
A +LA LNK L+ +LG+F Y K+ L LG+L GN FT+ LR + E V +A NSL
Sbjct: 315 TAQRLAHLNKCLMNFKLGNFSYQKKPLKLGELQGNHFTVVLRNITGTDEQVQQA-MNSLK 373
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKE 201
GFINY+G+QRFG+ +VPT+ VG +L+ W + +IL PR G E+ + K RE + +
Sbjct: 374 EIGFINYYGMQRFGTTAVPTYQVGRAILQNSWTEVMDLILKPRSGAEKGYLVKCREEWAK 433
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKKCP-GNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
T D LRKLP E +L+ L K N + A IPR R+MY+HSYQS++WN+
Sbjct: 434 TKDPTAALRKLPVKRCVEGQLLRGLSKYGMKNIVSAFGIIPRNNRLMYIHSYQSYVWNNM 493
Query: 261 ASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHP 320
S R++ +G + V GDLV L P +
Sbjct: 494 VSKRIEDYGLKP-VPGDLV----------LKGATPTY----------------------- 519
Query: 321 DGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESL 380
+ D+N+ Y+I DVV+PLPG V+YP + + E Y + D +++
Sbjct: 520 ---------IEEDDVNN--YSIHDVVMPLPGFDVVYPKHKIREAYREMLTADNLDIDNMR 568
Query: 381 HNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEE 440
H ++++ S++G YR++ +P + W+++ Y D PL TD+D +
Sbjct: 569 HKIRDY---SLSGAYRKIIIRPQNVSWDVVAYDDPKIPLFNTDVDNL------------- 612
Query: 441 AVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALK 500
E K P V + S+GK ALK
Sbjct: 613 -------------------------------------EGKPPPVFA-----SEGKYRALK 630
Query: 501 LGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
+ +LP S YATMAIRE+LK TS+ LN
Sbjct: 631 MDFSLPPSTYATMAIREVLKMDTSIKNQTQLN 662
>gi|365762911|gb|EHN04443.1| Pus7p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 676
Score = 288 bits (736), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 189/543 (34%), Positives = 284/543 (52%), Gaps = 86/543 (15%)
Query: 2 GRNSKKRK-ERGDNPFDSRGSENWPEQLGK-FLRFHLYKENKDTQEALGLISKMLGILPR 59
RNS+ K E+ + D+ G ENW K F+ F L+KENKDT EA+ +I+K+L + R
Sbjct: 188 NRNSRTNKQEKINQTRDANGVENWGYGPSKDFIHFTLHKENKDTMEAVNVITKLLRVPSR 247
Query: 60 SFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRF 119
+AGTKD+R+V+ QRV++ K +L ALN+ L G+ +G++ + L LG L GN F
Sbjct: 248 VIRYAGTKDRRAVTCQRVSISKIGLDRLNALNRTLKGMIIGNYNFSDASLNLGDLKGNEF 307
Query: 120 TITLRGVV-----VDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEW 174
+ +R V V E+++ SL NGFINYFG+QRFG+ S+ TH +G LL W
Sbjct: 308 VVVIRDVTTGNSEVSLEEIVSNGCKSLSENGFINYFGMQRFGTFSISTHTIGRELLLSNW 367
Query: 175 KSAVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCL----KKCP 230
K A ++IL ++ + +AR+ + ET D L+++PR +AE A+L L K+
Sbjct: 368 KKAAELILSDQDNVLPKSKEARKIWAETKDAALALKQMPRQCLAENALLYSLSNQRKEED 427
Query: 231 GNYLQ-----ALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDD 285
G Y + A+ IPR LR MYVH+YQS++WN AS R++ HG + +VVGDLV D
Sbjct: 428 GTYSENAYYTAIMKIPRNLRTMYVHAYQSYVWNSIASKRIELHGLK-LVVGDLVI----D 482
Query: 286 TEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDV 345
T ++ ++ D DE D + + K VT DI+S KYT++DV
Sbjct: 483 TSEKSPLIS----------GIDDEDFDE----DVREAQFIRAKAVTQEDIDSXKYTMEDV 528
Query: 346 VLPLPGSRVIYPMN-DVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMD 404
VLP PG V+YP N ++ ++Y + + D ++ V++F S+ G+YR V QKP
Sbjct: 529 VLPSPGFDVLYPSNEELKQLYVDILKADNMDPFNMRRKVRDF---SLAGSYRTVIQKPKS 585
Query: 405 FEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDI 464
E+ ++ Y D ++ L TDLD + +
Sbjct: 586 LEYRIIHYDDPSQQLVNTDLDILNNTR--------------------------------- 612
Query: 465 KLSTENNEAACAKEVKQPHVESVCG---ADSQGKQMALKLGLTLPSSCYATMAIRELLKT 521
AKE Q ++++ D G++ A+ L L +S YATMA+REL+K
Sbjct: 613 -----------AKESGQKYMKAKLDRYMPDKGGEKTAVVLKFQLGTSAYATMALRELMKL 661
Query: 522 STS 524
TS
Sbjct: 662 ETS 664
>gi|74209276|dbj|BAE25003.1| unnamed protein product [Mus musculus]
Length = 727
Score = 287 bits (735), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 175/512 (34%), Positives = 251/512 (49%), Gaps = 106/512 (20%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+WP+ G + F LYKENKDT +A+ ++SK L + P F + GTKDKR+++ Q + V K
Sbjct: 315 SWPKSRGSYCHFVLYKENKDTMDAINVLSKYLRVKPNIFSYMGTKDKRAITVQEIAVLKI 374
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
A +LA LNK L+ ++LG+F Y K L LG L GN FT+ LR + E V +A SL
Sbjct: 375 SAQRLAHLNKCLMNLKLGNFSYQKTPLKLGALQGNHFTVVLRNITGTDEQVQQA-MQSLR 433
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKE 201
GFINY+G+QRFG+ +VPT+ VG +L+ W + +IL PR G E+ + K RE + +
Sbjct: 434 ETGFINYYGMQRFGTTAVPTYQVGRAILQNSWTEVMDLILKPRSGAEKGYLVKCREEWAK 493
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKKCP-GNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
T D L+KLP E +L+ L + N + A IPR R+MY+HSYQS++WN
Sbjct: 494 TKDPASALKKLPVKRCVEGQLLRGLSRYGMKNIVSAFGIIPRNNRLMYIHSYQSYVWNTM 553
Query: 261 ASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHP 320
S R++++G V GDLV T Y +D D+
Sbjct: 554 VSRRIEEYGLRP-VPGDLVLKGATPT------------YIEEDDVDN------------- 587
Query: 321 DGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESL 380
Y+I DVV+PLPG VIYP + ++E Y + D +++
Sbjct: 588 -------------------YSIHDVVMPLPGFDVIYPKHKISEAYREMLAADNLDIDNMR 628
Query: 381 HNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEE 440
H ++++ S++G YRR+ +P WE++ Y D PL TD+D +
Sbjct: 629 HTIRDY---SLSGAYRRIIIRPQSVSWEVVAYDDPKIPLFNTDVDNL------------- 672
Query: 441 AVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALK 500
E K P V + S+GK ALK
Sbjct: 673 -------------------------------------EGKPPPVFA-----SEGKYRALK 690
Query: 501 LGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
+ +LP S YATMAIRE+LK TS+ LN
Sbjct: 691 MDFSLPPSTYATMAIREVLKMDTSIKNQTQLN 722
>gi|148671221|gb|EDL03168.1| mCG114471 [Mus musculus]
Length = 577
Score = 287 bits (735), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 175/512 (34%), Positives = 251/512 (49%), Gaps = 106/512 (20%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+WP+ G + F LYKENKDT +A+ ++SK L + P F + GTKDKR+++ Q + V K
Sbjct: 165 SWPKSRGSYCHFVLYKENKDTMDAINVLSKYLRVKPNIFSYMGTKDKRAITVQEIAVLKI 224
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
A +LA LNK L+ ++LG+F Y K L LG L GN FT+ LR + E V +A SL
Sbjct: 225 SAQRLAHLNKCLMNLKLGNFSYQKTPLKLGALQGNHFTVVLRNITGTDEQVQQA-MQSLR 283
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKE 201
GFINY+G+QRFG+ +VPT+ VG +L+ W + +IL PR G E+ + K RE + +
Sbjct: 284 ETGFINYYGMQRFGTTAVPTYQVGRAILQNSWTEVMDLILKPRSGAEKGYLVKCREEWAK 343
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKKCP-GNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
T D L+KLP E +L+ L + N + A IPR R+MY+HSYQS++WN
Sbjct: 344 TKDPASALKKLPVKRCVEGQLLRGLSRYGMKNIVSAFGIIPRNNRLMYIHSYQSYVWNTM 403
Query: 261 ASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHP 320
S R++++G V GDLV T Y +D D+
Sbjct: 404 VSRRIEEYGLRP-VPGDLVLKGATPT------------YIEEDDVDN------------- 437
Query: 321 DGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESL 380
Y+I DVV+PLPG VIYP + ++E Y + D +++
Sbjct: 438 -------------------YSIHDVVMPLPGFDVIYPKHKISEAYREMLAADNLDIDNMR 478
Query: 381 HNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEE 440
H ++++ S++G YRR+ +P WE++ Y D PL TD+D +
Sbjct: 479 HTIRDY---SLSGAYRRIIIRPQSVSWEVVAYDDPKIPLFNTDVDNL------------- 522
Query: 441 AVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALK 500
E K P V + S+GK ALK
Sbjct: 523 -------------------------------------EGKPPPVFA-----SEGKYRALK 540
Query: 501 LGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
+ +LP S YATMAIRE+LK TS+ LN
Sbjct: 541 MDFSLPPSTYATMAIREVLKMDTSIKNQTQLN 572
>gi|412990605|emb|CCO17977.1| pseudouridylate synthase 7 homolog [Bathycoccus prasinos]
Length = 732
Score = 287 bits (735), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 192/526 (36%), Positives = 264/526 (50%), Gaps = 87/526 (16%)
Query: 24 WPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQR 83
WP L L+F + K +DT +AL + +L P+ F AGTKDKR+V+TQR++V+K R
Sbjct: 256 WPADLPTTLQFVMCKSGRDTTDALNQLGNLLKCNPKRFQIAGTKDKRAVTTQRISVYKYR 315
Query: 84 ASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGR 143
A +LA+LNK I++G+F YV+ L G+ +GN F I LR + ++ + A N+L
Sbjct: 316 AYRLASLNKACKDIKIGNFTYVERPLYFGKSMGNAFIICLRNIDERLKETVIAGINALRE 375
Query: 144 NGFINYFGLQRFGSGSV-----------PTHLVGATLLRGEWKSAVKMILDPREGERNEI 192
G INYFG QRFG+ S TH +GA LL G++K AV +IL P+ E +I
Sbjct: 376 TGTINYFGAQRFGNVSSTTQDASETSTGTTHKIGALLLNGKFKEAVDVILQPKMKESTKI 435
Query: 193 SKAREYYKETDDIDGTLRKLPRHLVAERAIL--QCLKKCPGNYLQALKAIPRTLRMMYVH 250
+A+E Y ET D LR +PR + ERAIL Q K ++ L AIP ++ MY++
Sbjct: 436 KQAKEKYLETKDAQEALRTIPRFMHIERAILEVQAAKGRENDFCGQLTAIPSKMKRMYIN 495
Query: 251 SYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSH 310
+YQS+LWN AS RV+K G VV GDLV D+ G E + H
Sbjct: 496 AYQSYLWNKVASERVRKFGINTVVEGDLVAIIDDEDN---GKTAEEIQ----------KH 542
Query: 311 LDEVPETDHPDGRHNL--VKTVTAADINSGKYTIDDVVLPLPGSRVIYP----------- 357
DE + G NL VK VTA D++ + DVVLP+PG VIYP
Sbjct: 543 SDEAYDKGLKRG-ENLKKVKLVTAEDVSKNAFDPSDVVLPVPGHAVIYPSWAATKADGED 601
Query: 358 --MNDVAEVYHHLA-EKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYID 414
D ++H LA KDG++L + H++ EFS+ S G+YRR+F KP D E E + Y D
Sbjct: 602 DKTLDGKALFHELAMNKDGVDLELTKHSIMEFSMRSYPGDYRRLFLKPKDLECEFMRYDD 661
Query: 415 GNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAA 474
L +TD+D K + N E D D
Sbjct: 662 SKIDLLKTDMDAFVKKNMKN----------TDEDDDGD---------------------- 689
Query: 475 CAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLK 520
K+V++ GK +A KL L + YATM +REL K
Sbjct: 690 --KKVEK----------KGGKLLAAKLSFKLGAGNYATMILRELTK 723
>gi|6324817|ref|NP_014886.1| pseudouridine synthase PUS7 [Saccharomyces cerevisiae S288c]
gi|2501603|sp|Q08647.1|PUS7_YEAST RecName: Full=Multisubstrate pseudouridine synthase 7; AltName:
Full=RNA pseudouridylate synthase 7; AltName:
Full=RNA-uridine isomerase 7; AltName: Full=tRNA
pseudouridine(13) synthase
gi|1420554|emb|CAA99464.1| unnamed protein product [Saccharomyces cerevisiae]
gi|285815118|tpg|DAA11011.1| TPA: pseudouridine synthase PUS7 [Saccharomyces cerevisiae S288c]
gi|392296569|gb|EIW07671.1| Pus7p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 676
Score = 287 bits (735), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 189/543 (34%), Positives = 284/543 (52%), Gaps = 86/543 (15%)
Query: 2 GRNSKKRK-ERGDNPFDSRGSENWPEQLGK-FLRFHLYKENKDTQEALGLISKMLGILPR 59
RNS+ K E+ + D+ G ENW K F+ F L+KENKDT EA+ +I+K+L + R
Sbjct: 188 NRNSRTNKQEKINQTRDANGVENWGYGPSKDFIHFTLHKENKDTMEAVNVITKLLRVPSR 247
Query: 60 SFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRF 119
+AGTKD+R+V+ QRV++ K +L ALN+ L G+ +G++ + L LG L GN F
Sbjct: 248 VIRYAGTKDRRAVTCQRVSISKIGLDRLNALNRTLKGMIIGNYNFSDASLNLGDLKGNEF 307
Query: 120 TITLRGVV-----VDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEW 174
+ +R V V E+++ SL NGFINYFG+QRFG+ S+ TH +G LL W
Sbjct: 308 VVVIRDVTTGNSEVSLEEIVSNGCKSLSENGFINYFGMQRFGTFSISTHTIGRELLLSNW 367
Query: 175 KSAVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCL----KKCP 230
K A ++IL ++ + +AR+ + ET D L+++PR +AE A+L L K+
Sbjct: 368 KKAAELILSDQDNVLPKSKEARKIWAETKDAALALKQMPRQCLAENALLYSLSNQRKEED 427
Query: 231 GNYLQ-----ALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDD 285
G Y + A+ IPR LR MYVH+YQS++WN AS R++ HG + +VVGDLV D
Sbjct: 428 GTYSENAYYTAIMKIPRNLRTMYVHAYQSYVWNSIASKRIELHGLK-LVVGDLVI----D 482
Query: 286 TEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDV 345
T ++ ++ D DE D + + K VT DI+S KYT++DV
Sbjct: 483 TSEKSPLIS----------GIDDEDFDE----DVREAQFIRAKAVTQEDIDSVKYTMEDV 528
Query: 346 VLPLPGSRVIYPMN-DVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMD 404
VLP PG V+YP N ++ ++Y + + D ++ V++F S+ G+YR V QKP
Sbjct: 529 VLPSPGFDVLYPSNEELKQLYVDILKADNMDPFNMRRKVRDF---SLAGSYRTVIQKPKS 585
Query: 405 FEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDI 464
E+ ++ Y D ++ L TDLD + +
Sbjct: 586 LEYRIIHYDDPSQQLVNTDLDILNNTR--------------------------------- 612
Query: 465 KLSTENNEAACAKEVKQPHVESVCG---ADSQGKQMALKLGLTLPSSCYATMAIRELLKT 521
AKE Q ++++ D G++ A+ L L +S YATMA+REL+K
Sbjct: 613 -----------AKESGQKYMKAKLDRYMPDKGGEKTAVVLKFQLGTSAYATMALRELMKL 661
Query: 522 STS 524
TS
Sbjct: 662 ETS 664
>gi|170091006|ref|XP_001876725.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648218|gb|EDR12461.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 690
Score = 287 bits (734), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 182/542 (33%), Positives = 268/542 (49%), Gaps = 110/542 (20%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTV----------- 79
++ F L K N+DTQ+ALG +S++L + + AGTKDKR V+ QRV++
Sbjct: 207 YIHFTLQKTNRDTQDALGHLSRLLHVSIKDLSVAGTKDKRGVTVQRVSLKRNNKTVEDVW 266
Query: 80 -----FKQRASKLAALNKRL-IGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVV----- 128
R L KR G+R+ D Y K L LG L GN F ITLR V +
Sbjct: 267 RLANGIDNRKPAQEVLTKRGDRGVRIADLNYRKASLELGMLKGNAFVITLRCVDIPDRSI 326
Query: 129 ---DSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPR 185
S + + + +++ GFINY+G+QRFG+ SVPTH +G LL+ EW+ AV MIL R
Sbjct: 327 LHLQSVEAMNQALDTMKNKGFINYYGMQRFGTASVPTHSIGLALLKSEWQKAVSMILRKR 386
Query: 186 EGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPG---NYLQALKAIPR 242
GE +++ AR+ + D+D LR LP+ +VAER +L+ KK G N + AL IPR
Sbjct: 387 HGEHPDVAAARDAWLVDGDLDTALRLLPKRVVAERCLLESFKKQGGDTRNAMGALSTIPR 446
Query: 243 TLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESS 302
LR+MY+H+YQS++WN S R++ +G + VVGDLVF K DTE+ +
Sbjct: 447 NLRLMYIHAYQSYVWNAIVSERIKNYGADKPVVGDLVFDKEGDTEQTVDV---------- 496
Query: 303 NDADDSSHLDEVP-ETDHPDGRHN-----------LVKTVTAADINSGKYTIDDVVLPLP 350
DD+ D +P E D PD +KT+T +D++ KYTI DV++PLP
Sbjct: 497 GLQDDTPLFDGIPEEVDEPDDTSRSKKSRKPYVPPRIKTLTESDLD--KYTIFDVIMPLP 554
Query: 351 GSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELL 410
G+ V YP + E+Y DG++ + +E+ ++ G+YR + P + W +L
Sbjct: 555 GTDVAYPGGKLGELYKEFLRMDGLDPDNFVRKQREY---TLNGSYRAIIHLPRELSWSVL 611
Query: 411 TYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTEN 470
Y D + PLA++D E+ + G DP + + ++ IKLS
Sbjct: 612 RYTDPDVPLAQSD---------------EDGLLGF---DPPSIVDDGKFMALQIKLS--- 650
Query: 471 NEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKT 530
L ++ YATMA+RE+ KT TS +
Sbjct: 651 ----------------------------------LGTAAYATMALREITKTDTSSHIQTS 676
Query: 531 LN 532
L
Sbjct: 677 LT 678
>gi|345327842|ref|XP_001508639.2| PREDICTED: pseudouridylate synthase 7 homolog [Ornithorhynchus
anatinus]
Length = 675
Score = 287 bits (734), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 174/512 (33%), Positives = 260/512 (50%), Gaps = 106/512 (20%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+WP+ G + F LYKENKDT +A+ ++SK L + P F + GTKDKR+++ Q + V K
Sbjct: 263 SWPKSRGSYCHFVLYKENKDTMDAINVLSKFLRVTPNIFSYMGTKDKRAITVQEIAVLKI 322
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
A +LA LNK L+ +LG+F Y K L LG+L GN FT+ LR + ++ ++ + SL
Sbjct: 323 TAQRLAHLNKCLMNFKLGNFSYQKSPLKLGELQGNHFTVVLRN-ITGTDGQVQQAMTSLR 381
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKE 201
GFINYFG+QRFG+ +VPT+ VG +L+ W + +IL PR G E+ + K RE + +
Sbjct: 382 EIGFINYFGMQRFGTTAVPTYQVGRAILQNCWTEVMDLILKPRPGAEKGYLVKCREEWAK 441
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKKCP-GNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
T D L+KLP E +L+ L K N + A IPR R+MY+HSYQS++WN+
Sbjct: 442 TKDPAAALKKLPVKRCVEGQLLRGLSKYGLKNVVSAFGIIPRNNRLMYIHSYQSYVWNNM 501
Query: 261 ASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHP 320
S R++++G + V GDLV KG + H++E
Sbjct: 502 VSKRIEEYGLQP-VPGDLVL-KG----------------------ATAIHIEE------- 530
Query: 321 DGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESL 380
D++S Y+I DVV+PLPG VIYP + ++E Y + D +++
Sbjct: 531 ------------GDVDS--YSIHDVVMPLPGFDVIYPKHKISEAYKEMLAADSLDIDNMR 576
Query: 381 HNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEE 440
H ++++ S++G YR++ +P + WE++ Y D PL TD+D +
Sbjct: 577 HKIRDY---SLSGAYRKIIIRPQNVSWEVIAYDDPRIPLFNTDVDNL------------- 620
Query: 441 AVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALK 500
E K P V + ++GK ALK
Sbjct: 621 -------------------------------------EGKPPPVFA-----TEGKYRALK 638
Query: 501 LGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
+ +LP S YATMAIRE+LK TS+ LN
Sbjct: 639 MEFSLPPSTYATMAIREVLKMDTSIKNQTQLN 670
>gi|389747135|gb|EIM88314.1| tRNA pseudouridine synthase D [Stereum hirsutum FP-91666 SS1]
Length = 887
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 166/432 (38%), Positives = 239/432 (55%), Gaps = 51/432 (11%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFK- 81
N+P ++ F L K N+DTQ+AL +++ L + + AGTKDKR V+ QRV + +
Sbjct: 381 NYP----PYIHFTLQKTNRDTQDALAYLARTLHVTTKDLSTAGTKDKRGVTVQRVALRRG 436
Query: 82 ----------------QRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRG 125
+++++ A + G+R+ DF Y K L LG L GN F ITLR
Sbjct: 437 AKTVEDVWKLANGVPGRKSAEDAVKERGERGVRIADFNYRKAALDLGMLKGNAFVITLRN 496
Query: 126 VVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPR 185
V VDS D + + NS+ +GFINY+G+QRFG+ S+PTH +G LL +W AV +IL R
Sbjct: 497 VQVDSMDTLDKAMNSIKDHGFINYYGMQRFGTASIPTHSIGLALLLEDWHRAVSLILRNR 556
Query: 186 EGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPG---NYLQALKAIPR 242
GE E+ +AR + E D+D L +PR +VAER IL+ KK G N AL IPR
Sbjct: 557 PGEHPEVVEARRAWLEDKDLDRALELMPRRVVAERCILESYKKQNGETRNAFGALSTIPR 616
Query: 243 TLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESS 302
LR+MYVH+YQS++WN S R++ +G + V GDLV DDT +E N + +
Sbjct: 617 NLRLMYVHAYQSYVWNAIVSERMRTYGADKPVPGDLVM---DDTPQE---SNIDAGSDGE 670
Query: 303 NDADDSSHLDEVPETDHPDGRHNL-------VKTVTAADINSGKYTIDDVVLPLPGSRVI 355
DADD GR N VK +TA D++ KYTI D+V+PLPG V
Sbjct: 671 ADADDGPSR---------GGRRNRKPWQAPKVKVLTAEDVD--KYTIFDIVMPLPGKDVA 719
Query: 356 YPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDG 415
+P ++ E Y KDG++ KE+ S++G+YR++ P + W +L Y D
Sbjct: 720 FPGGELGEKYKEYLRKDGLDPDNFHRRQKEY---SLSGSYRKILHLPKELSWSVLRYTDP 776
Query: 416 NKPLAETDLDKI 427
+ PLA++D D++
Sbjct: 777 DVPLAQSDEDQL 788
Score = 41.6 bits (96), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%)
Query: 494 GKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
GK +AL++ LTL ++ YATMA+RE+ KT TS F L
Sbjct: 800 GKFVALQIRLTLGTAAYATMALREVTKTETSSHFQTALT 838
>gi|354548050|emb|CCE44786.1| hypothetical protein CPAR2_405890 [Candida parapsilosis]
Length = 697
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 189/513 (36%), Positives = 270/513 (52%), Gaps = 74/513 (14%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
+L F ++K+N+DT + I+KML I P++ +AGTKD+R V+ Q+ + + + +++AL
Sbjct: 234 YLHFAVFKQNRDTMDVANNIAKMLRISPKTINYAGTKDRRGVTCQKFCIHRGKVLRVSAL 293
Query: 91 NK-RLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSED--------VIKASANSL 141
NK + +LG F Y L LG L GN FTITLR V E+ ++ +SL
Sbjct: 294 NKMKNSNFKLGSFTYEDYPLKLGDLSGNEFTITLRDVKPAVEESTSAELHTIVAQCFDSL 353
Query: 142 GRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKE 201
++GFINYFG+QRFGS SVPTH +G LL+ +W V ++L +E R+ +KE
Sbjct: 354 DKHGFINYFGMQRFGSFSVPTHQLGVALLQEDWGKCVDLLLSEQEVCAPGTMDMRKIWKE 413
Query: 202 TDDIDGTLRKLPRHLVAERAILQCL---------KKCPGNYLQALKAIPRTLRMMYVHSY 252
D + LPRH VAE +L+ L K P +YL++L AIP+ LRMMYVH+Y
Sbjct: 414 KRDPKEASKALPRHFVAENCVLKVLSNEQQDSEKKYKPHSYLKSLLAIPKNLRMMYVHAY 473
Query: 253 QSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLD 312
QS++WN AS R++ G E V GDLV DD E V+ FE +D + +
Sbjct: 474 QSYVWNLVASKRIELFGLE-VQEGDLVL---DDQSTETTSVDDGFE-------EDVAVSN 522
Query: 313 EVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMND-VAEVYHHLAEK 371
V VK +T DINSGKY+I DVVLP PG ++ YP N+ + +VY K
Sbjct: 523 TVA-----------VKALTKEDINSGKYSIFDVVLPSPGFKIQYPTNEKLRQVYIDTMAK 571
Query: 372 DGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAK 431
D ++ + KEF S+TG YR + KP D +E++ Y KPL TDL+
Sbjct: 572 DNLDPFNLMRKNKEF---SLTGAYRTLLSKPKDLSYEIIEYKVDGKPLVRTDLE------ 622
Query: 432 LVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGAD 491
L+ + K E +KE + SD + +SE + +N A E K
Sbjct: 623 LLEMKKSEGGTAESKEMNLSDRIIKSE--------DSADNTTATTTEPK----------- 663
Query: 492 SQGKQMALKLGLTLPSSCYATMAIRELLKTSTS 524
A+ L + L S YATMA+RE ++ TS
Sbjct: 664 -----FAVVLKMKLDVSSYATMALREFMRIDTS 691
>gi|169861243|ref|XP_001837256.1| pseudouridine synthase [Coprinopsis cinerea okayama7#130]
gi|116501978|gb|EAU84873.1| pseudouridine synthase [Coprinopsis cinerea okayama7#130]
Length = 834
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 163/429 (37%), Positives = 239/429 (55%), Gaps = 39/429 (9%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ-------- 82
++ F L K N+DTQ+ALG +S++L + + AGTKDKR V+ QRV++ +
Sbjct: 331 YIHFTLQKTNRDTQDALGHLSRILHVSVKDLSVAGTKDKRGVTVQRVSLKRNNKTVEDIW 390
Query: 83 ---------RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDV 133
R ++ A + G+R+ D Y K GL LG L GN F ITLR V V+S +V
Sbjct: 391 RLGNGIGTSRTAETALTQRGERGVRIADLVYRKAGLELGMLKGNAFIITLRNVKVESREV 450
Query: 134 IKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEIS 193
+ + N++ GFINY+G+QRFG+ SVPTH +G LL+ +W A+ ++L R GE +++
Sbjct: 451 LDEALNTIKMKGFINYYGMQRFGTASVPTHAIGLALLKSDWNRAINLLLQKRYGEHPDVA 510
Query: 194 KAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPG---NYLQALKAIPRTLRMMYVH 250
AR+ + D+D L+ LPR +VAER IL+ KK G N + AL IPR LR+MY+H
Sbjct: 511 AARDAWLVDRDLDKALQLLPRRVVAERCILESFKKMKGDTRNAMGALSTIPRNLRLMYIH 570
Query: 251 SYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGD-------DTEKELGCVNPEFE-YESS 302
+YQS++WN S R++ G E VVGDLVF K D E+ G + + + + SS
Sbjct: 571 AYQSYVWNAIVSERIRMFGVEKPVVGDLVFEKNAASDQMEVDPERREGDEDSQGKRFISS 630
Query: 303 NDADDSSHLDEVPETDHPDGRHNLV----KTVTAADINSGKYTIDDVVLPLPGSRVIYPM 358
D S E R V KT+T D++ KYTI DV++PLPG+ V YP
Sbjct: 631 EDIGAQSQW--ASEQGRKRNRKPYVPPKIKTLTEEDLD--KYTIFDVIMPLPGTDVAYPG 686
Query: 359 NDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKP 418
+ E Y DG++ + KE+ ++ G+YR + P + W +L Y D + P
Sbjct: 687 GRLGERYREFLRADGLDPDNFVRKQKEY---TLNGSYRTILHLPKELSWSVLQYTDPDVP 743
Query: 419 LAETDLDKI 427
LA++D DK+
Sbjct: 744 LAQSDEDKL 752
>gi|281604225|ref|NP_001164060.1| pseudouridylate synthase 7 homolog [Rattus norvegicus]
Length = 660
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 176/512 (34%), Positives = 259/512 (50%), Gaps = 106/512 (20%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+WP+ G + F LYKENKDT +A+ ++SK L + P F + GTKDKR+++ Q + V K
Sbjct: 248 SWPKSRGSYCHFVLYKENKDTMDAINVLSKYLRVKPNIFSYMGTKDKRAITVQEIAVLKI 307
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
A +LA LNK L+ +LG+F Y K L LG+L GN FT+ LR + E V +A +SL
Sbjct: 308 SAQRLAHLNKCLMNFKLGNFSYQKTPLKLGELQGNHFTVVLRNITGTDEQVQQA-MHSLQ 366
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKE 201
+ GFINY+G+QRFG+ +VPT+ VG +L+ W + +IL PR G E+ + K RE + +
Sbjct: 367 QTGFINYYGMQRFGTTAVPTYQVGRAILQNSWTEVMDLILKPRSGAEKGYLVKCREEWAK 426
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKKCP-GNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
T D L+KLP E +L+ L K N + A IPR R+MY+HSYQS++WN
Sbjct: 427 TKDPASALKKLPVKRCVEGQLLRGLSKYGLKNIVSAFGIIPRNNRLMYIHSYQSYVWNSM 486
Query: 261 ASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHP 320
S R++ +G + V GDLV KG +++++E
Sbjct: 487 VSRRIELYGLKP-VPGDLVL-KG----------------------ATATYIEE------- 515
Query: 321 DGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESL 380
DIN+ Y+I DVV+PLPG VIYP + ++E Y + D +++
Sbjct: 516 ------------DDINN--YSIHDVVMPLPGFDVIYPKHKISEAYREMLAADNLDIDNMR 561
Query: 381 HNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEE 440
H ++++ S++G YR++ +P WE++ Y D PL TD+D +
Sbjct: 562 HTIRDY---SLSGAYRKIIIRPQSVSWEVVAYDDPKIPLFNTDVDNL------------- 605
Query: 441 AVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALK 500
E K P V + S+G+ ALK
Sbjct: 606 -------------------------------------EGKPPPVFA-----SEGRYRALK 623
Query: 501 LGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
+ +LP S YATMAIRE+LK TS+ LN
Sbjct: 624 MDFSLPPSTYATMAIREVLKMDTSIKNQTQLN 655
>gi|430811768|emb|CCJ30791.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 547
Score = 285 bits (729), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 157/406 (38%), Positives = 240/406 (59%), Gaps = 26/406 (6%)
Query: 24 WPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQR 83
W G++ F+LYKEN DT E + L+SK + PR F FAGTKDKR + QR T +K +
Sbjct: 129 WANVGGEYCMFYLYKENMDTMECINLLSKFFRVKPRIFSFAGTKDKRGCTVQRCTAWKIK 188
Query: 84 ASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGR 143
A +L+ LNK L G R+G+F Y L LG L GN FTI LR V D + +I ++L
Sbjct: 189 AGRLSNLNKSLKGFRVGNFSYTDTKLELGDLKGNAFTIILRDVKED-DGLINECLSALKT 247
Query: 144 NGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEIS-KAREYYKET 202
GF+NY+G+QRFG+ + TH+VG LL+ +W+ AV+++L ER ++S +++ +
Sbjct: 248 KGFVNYYGIQRFGTSIIATHVVGILLLKSDWQGAVELLL-KEASERIQVSTESKSIWSNI 306
Query: 203 DDIDGTLRKLPRHLVAERAILQCLKKCPG---NYLQALKAIPRTLRMMYVHSYQSFLWNH 259
+++ L+K P+ V+E ++L L K NY AL+ IPR LRMMY+H+YQS++WN
Sbjct: 307 ENVKSALKKTPQKYVSEYSVLSSLAKESSKSPNYASALQKIPRNLRMMYIHAYQSYVWNF 366
Query: 260 AASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDH 319
A + R++K G + V GDLV C + ++ EF S+ D S+ L ++ H
Sbjct: 367 AVTERLRKFGF-NPVEGDLVLCNQTIYSND-DLIDSEF---SNPQIDSSAKLTKIIRAKH 421
Query: 320 PDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTES 379
+TA ++ + Y+I D+VLP PG ++YP N + + Y +KDG++
Sbjct: 422 ----------LTADELIN--YSIYDIVLPTPGHDILYPKNCIKDFYLDFMKKDGLDGLNM 469
Query: 380 LHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLD 425
+ +VKEF S+TG+YR + KP EWE++ Y D ++ L+ TD+D
Sbjct: 470 VRSVKEF---SLTGSYRLILSKPKMMEWEIVKYQDPDEQLSMTDID 512
>gi|444317715|ref|XP_004179515.1| hypothetical protein TBLA_0C01830 [Tetrapisispora blattae CBS 6284]
gi|387512556|emb|CCH59996.1| hypothetical protein TBLA_0C01830 [Tetrapisispora blattae CBS 6284]
Length = 682
Score = 285 bits (729), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 189/536 (35%), Positives = 275/536 (51%), Gaps = 86/536 (16%)
Query: 8 RKERGDNPFDSRGSENW---PEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFA 64
+KE + D+ G ENW P + +FL F L+KENKDT +A+ +I+K+L R FA
Sbjct: 192 KKELVERTKDANGVENWGYGPTK--EFLHFTLHKENKDTMDAVNIIAKLLRFPTRVIRFA 249
Query: 65 GTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLR 124
GTKD+R V+ QR+++ K +L ALN+ L G+ +G F Y L LG+L GN F I +R
Sbjct: 250 GTKDRRGVTCQRLSISKLSVDRLNALNRTLKGMTVGGFKYEDVSLNLGELQGNEFVIVIR 309
Query: 125 GVVVDS------EDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAV 178
V V+ ED++ SL NGFINYFG+QRFG+ SV TH +G LL W++AV
Sbjct: 310 DVQVNEDSSMTLEDILDKGCKSLTNNGFINYFGMQRFGTFSVSTHEIGKELLNENWENAV 369
Query: 179 KMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCL---------KKC 229
++IL + + + +AR+ + ET D L+K+PR +AE A+L L K
Sbjct: 370 ELILSEQTNVQPKSIEARKIWAETKDAKEALKKMPRQCLAENAVLHFLSSQALGEDGKYS 429
Query: 230 PGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKE 289
Y A+ IPR LR MYVH+YQS++WN AS R++ +G + +V GDLV +D E+
Sbjct: 430 ANAYYTAIMKIPRNLRTMYVHAYQSYVWNAVASKRIELYGLK-LVPGDLVV---NDEEQI 485
Query: 290 LGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPL 349
+ E E +AD K VT DI+ GKYTIDD++LP
Sbjct: 486 ITEEKEEEFDEDLREAD-----------------FVRAKAVTQEDIDQGKYTIDDMILPT 528
Query: 350 PGSRVIYPMND-VAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWE 408
PG VIYP ++ + E+Y L +KDG+N E V++F S+ G YR V KP + E+
Sbjct: 529 PGFDVIYPTDEKLKELYVELMKKDGMNPFEMRRKVRDF---SLAGTYRVVINKPKELEYN 585
Query: 409 LLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLST 468
++ Y + L +DL+ + NK
Sbjct: 586 IIKYETDTQQLINSDLE----------------ILNNKR-------------------GK 610
Query: 469 ENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTS 524
EN + ++++ + G ++A+ L L S YATM +REL+K TS
Sbjct: 611 ENGQKYMKDKLQR------ISKEKGGDKVAVILKFQLGISAYATMLLRELMKLETS 660
>gi|190407548|gb|EDV10815.1| pseudouridine synthase [Saccharomyces cerevisiae RM11-1a]
Length = 676
Score = 285 bits (729), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 188/542 (34%), Positives = 283/542 (52%), Gaps = 86/542 (15%)
Query: 3 RNSKKRK-ERGDNPFDSRGSENWPEQLGK-FLRFHLYKENKDTQEALGLISKMLGILPRS 60
RNS+ K E+ + D+ G ENW K F+ F L+KENKDT EA+ +I+K+L + R
Sbjct: 189 RNSRTNKQEKINQTRDANGVENWGYGPSKDFIHFTLHKENKDTMEAVNVITKLLRVPSRV 248
Query: 61 FGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFT 120
+AGTKD+R+V+ QRV++ K +L ALN+ L G+ +G++ + L LG L GN F
Sbjct: 249 IRYAGTKDRRAVTCQRVSISKIGLDRLNALNRTLKGMIIGNYNFSDASLNLGDLKGNEFV 308
Query: 121 ITLRGVV-----VDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWK 175
+ +R V V E+++ SL NGF YFG+QRFG+ S+ TH +G LL WK
Sbjct: 309 VVIRDVTTGNSEVSLEEIVPNGCKSLSENGFYQYFGMQRFGTFSISTHTIGRELLFKNWK 368
Query: 176 SAVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCL----KKCPG 231
A ++IL ++ + +AR+ + ET D L+++PR +AE A+L L K+ G
Sbjct: 369 KAAELILSDQDNVLPKSKEARKIWAETKDAALALKQMPRQCLAENALLYSLSNQRKEEDG 428
Query: 232 NYLQ-----ALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDT 286
Y + A+ IPR LR MYVH+YQS++WN AS R++ HG + +VVGDLV DT
Sbjct: 429 TYSENAYYTAIMKIPRNLRTMYVHAYQSYVWNSIASKRIELHGLK-LVVGDLVI----DT 483
Query: 287 EKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVV 346
++ ++ D DE D + + K VT DI+SGKYT++DVV
Sbjct: 484 SEKSPLIS----------GIDDEDFDE----DVREAQFIRAKAVTQEDIDSGKYTMEDVV 529
Query: 347 LPLPGSRVIYPMN-DVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDF 405
LP PG V+YP N ++ ++Y + + D ++ V++F S+ G+YR V QKP
Sbjct: 530 LPSPGFDVLYPSNEELKQLYVDILKADNMDPFNMRRKVRDF---SLAGSYRTVIQKPKSL 586
Query: 406 EWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIK 465
E+ ++ Y D ++ L TDLD + +
Sbjct: 587 EYRIIHYDDPSQQLVNTDLDILNNTR---------------------------------- 612
Query: 466 LSTENNEAACAKEVKQPHVESVCG---ADSQGKQMALKLGLTLPSSCYATMAIRELLKTS 522
AKE Q ++++ D G++ A+ L L +S YATMA+REL+K
Sbjct: 613 ----------AKESGQKYMKAKLDRYMPDKGGEKTAVVLKFQLGTSAYATMALRELMKLE 662
Query: 523 TS 524
TS
Sbjct: 663 TS 664
>gi|354498788|ref|XP_003511495.1| PREDICTED: pseudouridylate synthase 7 homolog isoform 2 [Cricetulus
griseus]
Length = 663
Score = 284 bits (726), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 175/512 (34%), Positives = 256/512 (50%), Gaps = 106/512 (20%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+WP+ G + F LYKENKDT +A+ ++SK L + P F + GTKDKR+++ Q + V K
Sbjct: 251 SWPKSRGSYCHFVLYKENKDTMDAINVLSKYLRVKPNIFSYMGTKDKRAITVQEIAVLKI 310
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
A +LA LNK L+ +LG+F Y K L LG+L GN FT+ LR + +E V +A SL
Sbjct: 311 SAQRLAHLNKCLMNFKLGNFSYQKNPLKLGELQGNHFTVVLRNITGTNEQVQQA-MQSLK 369
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKE 201
GFINY+G+QRFG+ +VPT+ VG +L+ W + +IL PR G E+ + K RE + +
Sbjct: 370 ETGFINYYGMQRFGTTAVPTYQVGRAILQNSWTEVMDLILKPRSGAEKGYLVKCREEWAK 429
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKKCP-GNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
T D LRKLP E +L+ L K N + A IPR R+MY+HSYQS++WN
Sbjct: 430 TKDPASALRKLPVKRCVEGQLLRGLSKYGMKNIVSAFGIIPRNNRLMYIHSYQSYVWNTM 489
Query: 261 ASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHP 320
S R++ +G + V GDLV KG +++++E
Sbjct: 490 VSKRIEDYGLKP-VPGDLVL-KG----------------------ATATYIEE------- 518
Query: 321 DGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESL 380
D+N+ Y+I DVV+PLPG VIYP + ++E Y + D +++
Sbjct: 519 ------------EDVNN--YSIHDVVMPLPGFDVIYPKHKISEAYREMLAADNLDIDNMR 564
Query: 381 HNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEE 440
H ++++ S++G YR++ +P + WE++ Y D PL TD+D +
Sbjct: 565 HTIRDY---SLSGAYRKIIIRPQNVSWEVVAYDDPKIPLFNTDVDNL------------- 608
Query: 441 AVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALK 500
E K P V + G K LK
Sbjct: 609 -------------------------------------EGKPPPVFASEG-----KYRPLK 626
Query: 501 LGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
+ +LP S YATMAIRE+LK TS+ LN
Sbjct: 627 MDFSLPPSTYATMAIREVLKMDTSIKKQTQLN 658
>gi|74208429|dbj|BAE26400.1| unnamed protein product [Mus musculus]
Length = 653
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 172/504 (34%), Positives = 248/504 (49%), Gaps = 106/504 (21%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+WP+ G + F LYKENKDT +A+ ++SK L + P F + GTKDKR+++ Q + V K
Sbjct: 248 SWPKSRGSYCHFVLYKENKDTMDAINVLSKYLRVKPNIFSYMGTKDKRAITVQEIAVLKI 307
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
A +LA LNK L+ ++LG+F Y K L LG L GN FT+ LR + E V +A SL
Sbjct: 308 SAQRLAHLNKCLMNLKLGNFSYQKTPLKLGALQGNHFTVVLRNITGTDEQVQQA-MQSLR 366
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKE 201
GFINY+G+QRFG+ +VPT+ VG +L+ W + +IL PR G E+ + K RE + +
Sbjct: 367 ETGFINYYGMQRFGTTAVPTYQVGRAILQNSWTEVMDLILKPRSGAEKGYLVKCREEWAK 426
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKKCP-GNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
T D L+KLP E +L+ L + N + A IPR R+MY+HSYQS++WN
Sbjct: 427 TKDPASALKKLPVKRCVEGQLLRGLSRYGMKNIVSAFGIIPRNNRLMYIHSYQSYVWNTM 486
Query: 261 ASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHP 320
S R++++G V GDLV T Y +D D+
Sbjct: 487 VSRRIEEYGLRP-VPGDLVLKGATPT------------YIEEDDVDN------------- 520
Query: 321 DGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESL 380
Y+I DVV+PLPG VIYP + ++E Y + D +++
Sbjct: 521 -------------------YSIHDVVMPLPGFDVIYPKHKISEAYREMLAADNLDIDNMR 561
Query: 381 HNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEE 440
H ++++ S++G YRR+ +P WE++ Y D PL TD+D +
Sbjct: 562 HTIRDY---SLSGAYRRIIIRPQSVSWEVVAYDDPKIPLFNTDVDNL------------- 605
Query: 441 AVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALK 500
E K P V + S+GK ALK
Sbjct: 606 -------------------------------------EGKPPPVFA-----SEGKYRALK 623
Query: 501 LGLTLPSSCYATMAIRELLKTSTS 524
+ +LP S YATMAIRE+LK T+
Sbjct: 624 MDFSLPPSTYATMAIREVLKMDTA 647
>gi|354498786|ref|XP_003511494.1| PREDICTED: pseudouridylate synthase 7 homolog isoform 1 [Cricetulus
griseus]
Length = 657
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 175/512 (34%), Positives = 256/512 (50%), Gaps = 106/512 (20%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+WP+ G + F LYKENKDT +A+ ++SK L + P F + GTKDKR+++ Q + V K
Sbjct: 245 SWPKSRGSYCHFVLYKENKDTMDAINVLSKYLRVKPNIFSYMGTKDKRAITVQEIAVLKI 304
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
A +LA LNK L+ +LG+F Y K L LG+L GN FT+ LR + +E V +A SL
Sbjct: 305 SAQRLAHLNKCLMNFKLGNFSYQKNPLKLGELQGNHFTVVLRNITGTNEQVQQA-MQSLK 363
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKE 201
GFINY+G+QRFG+ +VPT+ VG +L+ W + +IL PR G E+ + K RE + +
Sbjct: 364 ETGFINYYGMQRFGTTAVPTYQVGRAILQNSWTEVMDLILKPRSGAEKGYLVKCREEWAK 423
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKKCP-GNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
T D LRKLP E +L+ L K N + A IPR R+MY+HSYQS++WN
Sbjct: 424 TKDPASALRKLPVKRCVEGQLLRGLSKYGMKNIVSAFGIIPRNNRLMYIHSYQSYVWNTM 483
Query: 261 ASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHP 320
S R++ +G + V GDLV KG +++++E
Sbjct: 484 VSKRIEDYGLKP-VPGDLVL-KG----------------------ATATYIEE------- 512
Query: 321 DGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESL 380
D+N+ Y+I DVV+PLPG VIYP + ++E Y + D +++
Sbjct: 513 ------------EDVNN--YSIHDVVMPLPGFDVIYPKHKISEAYREMLAADNLDIDNMR 558
Query: 381 HNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEE 440
H ++++ S++G YR++ +P + WE++ Y D PL TD+D +
Sbjct: 559 HTIRDY---SLSGAYRKIIIRPQNVSWEVVAYDDPKIPLFNTDVDNL------------- 602
Query: 441 AVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALK 500
E K P V + G K LK
Sbjct: 603 -------------------------------------EGKPPPVFASEG-----KYRPLK 620
Query: 501 LGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
+ +LP S YATMAIRE+LK TS+ LN
Sbjct: 621 MDFSLPPSTYATMAIREVLKMDTSIKKQTQLN 652
>gi|448106948|ref|XP_004200867.1| Piso0_003477 [Millerozyma farinosa CBS 7064]
gi|448109959|ref|XP_004201498.1| Piso0_003477 [Millerozyma farinosa CBS 7064]
gi|359382289|emb|CCE81126.1| Piso0_003477 [Millerozyma farinosa CBS 7064]
gi|359383054|emb|CCE80361.1| Piso0_003477 [Millerozyma farinosa CBS 7064]
Length = 695
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 183/541 (33%), Positives = 278/541 (51%), Gaps = 81/541 (14%)
Query: 4 NSKKRKERGDNPFDSRGSENWPEQLGKF---LRFHLYKENKDTQEALGLISKMLGILPRS 60
N ++ + N D G N+ LG F L F +YKEN++T E I+K L I +S
Sbjct: 205 NRRRNPQESINHVDENGVVNYG--LGPFKNYLHFTVYKENRETMEVASTIAKYLRITNKS 262
Query: 61 FGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFT 120
+AGTKD+R V+ QR +++K + +++++LNK L LG F Y + LG L GN FT
Sbjct: 263 VSYAGTKDRRGVTCQRFSIYKGKVARVSSLNKGLKNTTLGGFAYEDNPIGLGDLSGNVFT 322
Query: 121 ITLRGV-VVDS----EDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWK 175
I +R V VD E++++ S N L GFINYFG+QRFG+ S+ TH++GA LLR +WK
Sbjct: 323 IVIRNVKPVDENANLEELVEQSFNVLKNQGFINYFGMQRFGTFSISTHVLGAYLLREDWK 382
Query: 176 SAVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKK------- 228
A +++L ++ + +AR + ET + L+K+PR AE AIL L+K
Sbjct: 383 GAAELVLAEQDIVLPDSVEARRIWAETKNAALALKKMPRRCSAECAILSVLEKEQLVDDE 442
Query: 229 --CPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDT 286
+Y +++ AIP+ LR MYVH+YQS++WN S R++ GT V GDLV D
Sbjct: 443 DYSSQSYFKSIMAIPKNLRSMYVHAYQSYVWNLVVSKRIELFGT-TVQEGDLVIVDKSDK 501
Query: 287 EKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKT--VTAADINSGKYTIDD 344
E+ ++ D +S D+ PE D N V+ +T DI SGKY+I D
Sbjct: 502 -------------EAKSETDAASSADDFPEDVSSD---NFVRARPLTKEDIESGKYSIFD 545
Query: 345 VVLPLPGSRVIYPMND-VAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPM 403
VVLP PG ++YP ND + VY + KD ++ V++F S+ G+YRR+ +P
Sbjct: 546 VVLPTPGFDILYPQNDKLLTVYQEVMAKDNLDPKSMNRKVRDF---SLAGSYRRIMGRPD 602
Query: 404 DFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKD 463
D + ++ Y D PL TDL + + S+ +++D
Sbjct: 603 DLSYNIVKYSDSLAPLVRTDLQIL--------------------------RRNSDKITED 636
Query: 464 IKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTST 523
E++ + + + ++A+ L + L S YATMA+RE +K T
Sbjct: 637 PNFDFESDRV-------------ISNDEPEADKVAVVLKMKLGVSSYATMALREFMKADT 683
Query: 524 S 524
S
Sbjct: 684 S 684
>gi|45185822|ref|NP_983538.1| ACR136Cp [Ashbya gossypii ATCC 10895]
gi|44981577|gb|AAS51362.1| ACR136Cp [Ashbya gossypii ATCC 10895]
gi|374106744|gb|AEY95653.1| FACR136Cp [Ashbya gossypii FDAG1]
Length = 677
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 191/524 (36%), Positives = 268/524 (51%), Gaps = 73/524 (13%)
Query: 17 DSRGSENWPEQLGK-FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQ 75
D G NW K + F +YKENKDT + + +I+K L + ++ FAGTKD+R+V+ Q
Sbjct: 196 DENGVINWGYGPSKNCVHFTMYKENKDTMDVVNIIAKFLRVPTKAIRFAGTKDRRAVTCQ 255
Query: 76 RVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDS----- 130
R+++ + ++ ALN L G+ LG F + E L LG L GN F I +R V D
Sbjct: 256 RLSIGRIGLDRINALNNALKGVVLGGFSFEDEPLSLGDLNGNEFVIVIRDVSTDPNSATP 315
Query: 131 -EDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGER 189
E ++ L GFINYFG+QRFG+ SV TH VG LL WK+AV +IL +
Sbjct: 316 LESILDRGCELLKNRGFINYFGMQRFGTFSVSTHEVGKELLLENWKNAVDLILSEQNNVL 375
Query: 190 NEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCL---KKCPGN-----YLQALKAIP 241
+AR+ + ET D + LRK+PR +AE +IL L KK G Y A+ IP
Sbjct: 376 PASKEARKIWAETGDAESALRKMPRQCLAENSILHTLATQKKNEGEYESGAYYAAIMKIP 435
Query: 242 RTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYES 301
R LR MYVH+YQS++WN S R+ G H V GDLV + D+ K VN E
Sbjct: 436 RNLRTMYVHAYQSYVWNTVTSKRMALFGL-HAVAGDLVLVESDENAK----VNIA---ED 487
Query: 302 SNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMND- 360
S DADDS E E D + K +T DI SGK+TIDDVVLP PG YP N+
Sbjct: 488 SEDADDS----EFSE-DLRGAQFVRAKALTEEDIASGKWTIDDVVLPTPGFDTTYPENET 542
Query: 361 VAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLA 420
+ +Y + KDG++ + V++F S+ G+YR + QK D ++++ Y D + L
Sbjct: 543 LKALYKEIMTKDGLDPFDMRRKVRDF---SLAGSYRHILQKTKDITYQIIHYKDSTQQLI 599
Query: 421 ETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVK 480
+D + I+K + A +++ + MK
Sbjct: 600 NSDFE---------ILKNKRA-----KENGRNYMKDK----------------------- 622
Query: 481 QPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTS 524
++ +C AD G + A+ L L S YATMA+REL+K TS
Sbjct: 623 ---LDRIC-ADKGGDKTAVVLKFKLGVSAYATMALRELMKAETS 662
>gi|348512867|ref|XP_003443964.1| PREDICTED: pseudouridylate synthase 7 homolog [Oreochromis
niloticus]
Length = 631
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 175/511 (34%), Positives = 250/511 (48%), Gaps = 106/511 (20%)
Query: 24 WPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQR 83
WP+ G F F LYKENKDT +A+ ++SK L + P F + GTKDKR+++ Q + V K
Sbjct: 220 WPKNRGSFCHFVLYKENKDTMDAINVLSKFLRLRPNMFSYMGTKDKRAITVQEIAVLKIT 279
Query: 84 ASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGR 143
A +LA LNK L+ ++LG+FCY L LG+L GN FT+ +R + E V +A SL +
Sbjct: 280 AERLAHLNKCLMNLKLGNFCYKNHPLKLGELQGNHFTVVIRNITGTDEQVDQA-MTSLKQ 338
Query: 144 NGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKET 202
GFINY+G+QRFG+ +VPTH VG +L+ +W + +IL PR G E+ + + RE + +T
Sbjct: 339 TGFINYYGMQRFGTTAVPTHHVGRAILKNDWNEVMDLILKPRPGAEKEFLVRCREEWAKT 398
Query: 203 DDIDGTLRKLPRHLVAERAILQCLKKC-PGNYLQALKAIPRTLRMMYVHSYQSFLWNHAA 261
D + L+KLP E +L+ L N + A IPR R+MY+HSYQS +WN
Sbjct: 399 QDPEAALKKLPNKRCVEGQLLRGLSMYGKKNIVTAFGLIPRNNRLMYIHSYQSRVWNTMV 458
Query: 262 SARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPD 321
S R++ G + V GDLV KG ++H+ E +
Sbjct: 459 SRRIEAFGLK-AVKGDLVL-KG-----------------------TTAHVLSAEEAE--- 490
Query: 322 GRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLH 381
Y+I D+V+PLPG VIYP + + E Y L D +++ H
Sbjct: 491 -----------------SYSIHDIVMPLPGFDVIYPTHHIGEGYRELLTADRLDIDNMRH 533
Query: 382 NVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEA 441
VK++ S+ G YRRV +P D WE++ Y D L +D +K+ + + A
Sbjct: 534 KVKDY---SLAGAYRRVIIRPTDVSWEVINYDDPRVSLVHSDFEKL---------ENKPA 581
Query: 442 VCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKL 501
NKE GK AL++
Sbjct: 582 PVFNKE----------------------------------------------GKYRALRM 595
Query: 502 GLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
+LP S YATMAIRE+LK TS+ LN
Sbjct: 596 EFSLPPSTYATMAIREVLKLDTSIKKQTQLN 626
>gi|254572451|ref|XP_002493335.1| Pseudouridine synthase [Komagataella pastoris GS115]
gi|238033133|emb|CAY71156.1| Pseudouridine synthase [Komagataella pastoris GS115]
gi|328352646|emb|CCA39044.1| hypothetical protein PP7435_Chr3-0070 [Komagataella pastoris CBS
7435]
Length = 666
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 183/513 (35%), Positives = 274/513 (53%), Gaps = 71/513 (13%)
Query: 28 LGK---FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRA 84
LGK FL + KENK+T E +S++L I + +AGTKD+R V+ QR+++ K R
Sbjct: 200 LGKPTEFLHVTMLKENKETMEVASTLSRLLKIPVKWISYAGTKDRRGVTVQRLSLEKMRV 259
Query: 85 SKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDS--EDVIKASANSLG 142
+++ LNK L G++LG F Y + L LGQL GN F IT++ V E +++ +L
Sbjct: 260 ERVSHLNKVLRGVKLGSFAYATQPLKLGQLNGNSFLITIKDVKYSGVLEKILENRLQTLD 319
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKET 202
+GF+NYFG+QRFG+ SVPTH+VG LL+ WK AV+++L +E + ++R+ +K+T
Sbjct: 320 SSGFVNYFGMQRFGTFSVPTHIVGIQLLQSNWKGAVELLLSEQELVMQDSIESRKIWKQT 379
Query: 203 DDIDGTLRKLPRHLVAERAILQCLKK--------CPGNYLQALKAIPRTLRMMYVHSYQS 254
D L+ +P AE AIL+ L G+Y A+ IPR LR+MY H+YQS
Sbjct: 380 HDASLALKTMPSKCNAEYAILKKLSNERKKDGNYTSGSYFNAIMQIPRNLRIMYGHAYQS 439
Query: 255 FLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELG-CVNPEFEYESSNDADDSSHLDE 313
F+WN AS R++ G +VV GDLV D+T+++L N +F +D +D ++
Sbjct: 440 FIWNSVASKRIELFGL-NVVEGDLVLLTQDETDEDLKHQANDQF-----SDENDEGETED 493
Query: 314 VPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVA-EVYHHLAEKD 372
+ ++++ K VT +I S KY+I DVVLP PG VIYP N++ +VY L KD
Sbjct: 494 IKKSEYVQA-----KVVTKQEIESKKYSIFDVVLPTPGFDVIYPSNEILRQVYIDLMAKD 548
Query: 373 GINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKL 432
G++ V+EF S G YRR+ E+ + Y D N+ L TDL+
Sbjct: 549 GLDPFLMSRRVREF---SYAGTYRRLLGTVNGLEYYVRHYSDNNESLVRTDLEL------ 599
Query: 433 VNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESV-CGAD 491
+KLS N+A E P +E+ D
Sbjct: 600 -------------------------------LKLSGTLNQA----EGTHPLLEAKRIVED 624
Query: 492 SQGKQMALKLGLTLPSSCYATMAIRELLKTSTS 524
G ++A+ + + L + YATMA+REL++T TS
Sbjct: 625 KPGDKIAIIVKMQLDVASYATMALRELMRTETS 657
>gi|448522889|ref|XP_003868807.1| Pus7 protein [Candida orthopsilosis Co 90-125]
gi|380353147|emb|CCG25903.1| Pus7 protein [Candida orthopsilosis]
Length = 705
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 186/513 (36%), Positives = 272/513 (53%), Gaps = 77/513 (15%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
+L F ++K+N+DT + I+KML I P++ +AGTKD+R V+ Q+ + + + +++AL
Sbjct: 245 YLHFAVFKQNRDTMDVANNIAKMLRISPKTINYAGTKDRRGVTCQKFCIHRGKVLRVSAL 304
Query: 91 NK-RLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSED--------VIKASANSL 141
NK + +LG F Y L LG L GN FTITLR V +E+ ++ +S
Sbjct: 305 NKMKNSNFKLGSFTYEDYPLKLGDLAGNEFTITLRDVKPAAEESTNADLRTIVAQCFDSF 364
Query: 142 GRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKE 201
++GFINYFG+QRFGS SVPTH +G LL+ +W+ V+++L +E R+ +KE
Sbjct: 365 DKHGFINYFGMQRFGSFSVPTHQLGIALLQEDWEKCVELLLSEQEVCAPGTIDMRKIWKE 424
Query: 202 TDDIDGTLRKLPRHLVAERAILQCL---------KKCPGNYLQALKAIPRTLRMMYVHSY 252
D + LPRH VAE +IL+ L K P +YL++L AIP+ LRMMYVH+Y
Sbjct: 425 KRDAKEASKALPRHFVAENSILKVLSNEQQDAEKKYKPHSYLKSLLAIPKNLRMMYVHAY 484
Query: 253 QSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLD 312
QS++WN AS R++ G E + GDLV DD E V+ FE +D + +
Sbjct: 485 QSYVWNLVASKRIELFGLE-IQEGDLVL---DDQVTETTSVDDGFE-------EDVAVSN 533
Query: 313 EVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMND-VAEVYHHLAEK 371
V VK +T DI+SGKY+I DVVLP PG ++ YP N+ + +VY K
Sbjct: 534 TVS-----------VKALTKEDIDSGKYSIFDVVLPSPGFKIQYPTNEKLRQVYIDTMAK 582
Query: 372 DGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAK 431
D ++ + + KEFS +TG YR + KP D +EL+ Y KPL TDL+
Sbjct: 583 DSLDPFDLMRKNKEFS---LTGAYRTLLSKPKDLSYELIEYKVDGKPLVRTDLE------ 633
Query: 432 LVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGAD 491
L+ + K E GN + ENNE + + + E G +
Sbjct: 634 LLEVKKTE----GNND---------------------ENNEKDLSGRIIK--YEEDAGEN 666
Query: 492 SQGKQMALKLGLTLPSSCYATMAIRELLKTSTS 524
+ A+ L + L S YATMA+RE ++ TS
Sbjct: 667 LTEPKFAVVLKMKLDVSSYATMALREFMRIDTS 699
>gi|50290867|ref|XP_447866.1| hypothetical protein [Candida glabrata CBS 138]
gi|49527177|emb|CAG60815.1| unnamed protein product [Candida glabrata]
Length = 672
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 180/548 (32%), Positives = 287/548 (52%), Gaps = 86/548 (15%)
Query: 1 MGRNSKKRKERGDNPFDSRGSENWPEQLG-----KFLRFHLYKENKDTQEALGLISKMLG 55
+ RN++ + +S EN E G +F+ F L+KENKDT EA+ +++K++
Sbjct: 175 IARNNRNSRVNKQTLVESTKDENGVENYGYGPAKEFIHFTLHKENKDTMEAVNVLTKLMR 234
Query: 56 ILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLL 115
+ + +AGTKD+R+V+ QR+++ +L ALN+ L G+ +G + Y + LG+L
Sbjct: 235 VPNKLVRYAGTKDRRAVTCQRLSISGVNLERLNALNRTLKGMIIGGYKYSDVSMNLGELN 294
Query: 116 GNRFTITLRGVVVDS------EDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATL 169
GN F I +R VD ++V++A + SL NGF+NY+GLQRFG+ S+ TH +G L
Sbjct: 295 GNEFHIVIRDAKVDPACGKSLKEVLEAGSKSLVDNGFVNYYGLQRFGTFSISTHTIGKEL 354
Query: 170 LRGEWKSAVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKK- 228
L G W++A++MIL +E +AR+ + + D ++K+P+ +AE AIL L
Sbjct: 355 LLGNWRAAIEMILSDQENILPASKEARQLWAQNRDPYEAMKKMPKQCIAENAILHTLSNH 414
Query: 229 --------CPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVF 280
G Y A+ IPR LR MYVH+YQS++WN AS R++ GT+ + VGDLV
Sbjct: 415 RKEESGDFGTGAYHDAIMKIPRNLRTMYVHAYQSYVWNKVASKRIELFGTD-IRVGDLVI 473
Query: 281 CKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKY 340
+ D E + ++ AD S+ D+ E D K +T ++ SGKY
Sbjct: 474 IEKD-------------EDKQTDKADGSTSDDDFDE-DLRSADFIRAKALTEEEVKSGKY 519
Query: 341 TIDDVVLPLPGSRVIYPMND-VAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVF 399
TI+DVVLP PG ++YP +D + ++Y + DG++ + V++F S+ G+YR +
Sbjct: 520 TIEDVVLPTPGFDILYPSSDELKQLYVDIMGADGMDPFDMRRKVRDF---SLAGSYRNII 576
Query: 400 QKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSES 459
QKP +FE++++ Y D + + TDL+ +
Sbjct: 577 QKPKNFEYKIIQYEDPVQQIVNTDLEIL-------------------------------- 604
Query: 460 LSKDIKLSTENNEAACAKEVKQPHVESVCG---ADSQGKQMALKLGLTLPSSCYATMAIR 516
NN+ AKE Q ++++ D G + A+ L L +S YATMA+R
Sbjct: 605 ----------NNQR--AKENHQKYMKAKLERYVPDKPGSRTAVVLKFQLGTSAYATMALR 652
Query: 517 ELLKTSTS 524
EL+K TS
Sbjct: 653 ELMKLETS 660
>gi|426198462|gb|EKV48388.1| hypothetical protein AGABI2DRAFT_203148 [Agaricus bisporus var.
bisporus H97]
Length = 813
Score = 281 bits (719), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 176/520 (33%), Positives = 264/520 (50%), Gaps = 88/520 (16%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRAS----- 85
++ F L K N+D Q+ALG +S++L + ++ AGTKDKR V+ QRV++ + S
Sbjct: 333 YIHFTLQKTNRDNQDALGHLSRLLRVSVKNLTVAGTKDKRGVTVQRVSLKRGNKSVEDVW 392
Query: 86 -KLAALNKRLI----------GIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVI 134
++ L +R G+R+ D Y K L LG L GN F ITLR V V+S +++
Sbjct: 393 KQVNGLGRRQYETIMKERGERGVRIADLNYRKASLELGLLKGNAFVITLRNVKVESTEIL 452
Query: 135 KASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISK 194
+ + ++ GFINY+G+QRFG+ SVPTH +G LLR EW+ AV MIL R GE E+
Sbjct: 453 EEAMKTIKHKGFINYYGMQRFGTASVPTHSIGLALLRSEWQKAVDMILSKRHGEHPEVLA 512
Query: 195 AREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPG---NYLQALKAIPRTLRMMYVHS 251
ARE + + ++D L +PR ++AER IL+ +K G N + AL IP+ LR+MY+H+
Sbjct: 513 AREAWLDDGNLDRALELMPRRVIAERCILESYQKQKGETRNAMGALSTIPKNLRLMYIHA 572
Query: 252 YQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHL 311
YQS++WN S R++ +G E +VGDLV G + + E + E E ++ +
Sbjct: 573 YQSYVWNSIVSERIRTYGAEQPIVGDLVLESGSENDGEPDALEGEELEEEEAESHKRTRR 632
Query: 312 DEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEK 371
VP VK +T D+ KYTI DVV+PLPG V YP + E Y
Sbjct: 633 RFVP---------TRVKALTEEDL--AKYTIFDVVMPLPGRDVAYPGGKLGERYREFLRV 681
Query: 372 DGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAK 431
DG++ + +E++ + G+YR++ P + W+++ Y
Sbjct: 682 DGLDPDNFVRKQREYT---LNGSYRKILHLPKELTWDVMHYT------------------ 720
Query: 432 LVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGAD 491
DP + QS+ +D L + P V D
Sbjct: 721 -----------------DPDVSLAQSD---EDKLLGFD------------PPV-----VD 743
Query: 492 SQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTL 531
GK MAL++ LTL ++ YATMA+RE+ KT TS + L
Sbjct: 744 QDGKFMALQIRLTLGTASYATMALREITKTETSSHYQMNL 783
>gi|409079776|gb|EKM80137.1| hypothetical protein AGABI1DRAFT_120164 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 813
Score = 281 bits (718), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 176/520 (33%), Positives = 264/520 (50%), Gaps = 88/520 (16%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRAS----- 85
++ F L K N+D Q+ALG +S++L + ++ AGTKDKR V+ QRV++ + S
Sbjct: 333 YIHFTLQKTNRDNQDALGHLSRLLRVGVKNLTVAGTKDKRGVTVQRVSLKRGNKSVEDVW 392
Query: 86 -KLAALNKRLI----------GIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVI 134
++ L +R G+R+ D Y K L LG L GN F ITLR V V+S +++
Sbjct: 393 KQVNGLGRRQYETIMKERGERGVRIADLNYRKASLELGLLKGNAFVITLRNVKVESTEIL 452
Query: 135 KASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISK 194
+ + ++ GFINY+G+QRFG+ SVPTH +G LLR EW+ AV MIL R GE E+
Sbjct: 453 EEAMKTIKHKGFINYYGMQRFGTASVPTHSIGLALLRSEWQKAVDMILSKRHGEHPEVLA 512
Query: 195 AREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPG---NYLQALKAIPRTLRMMYVHS 251
ARE + + ++D L +PR ++AER IL+ +K G N + AL IP+ LR+MY+H+
Sbjct: 513 AREAWLDDGNLDRALELMPRRVIAERCILESYQKQKGETRNAMGALSTIPKNLRLMYIHA 572
Query: 252 YQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHL 311
YQS++WN S R++ +G E +VGDLV G + + E + E E ++ +
Sbjct: 573 YQSYVWNSIVSERIRTYGAEQPIVGDLVLESGSENDGEPDALEGEELEEEEAESHKRTRR 632
Query: 312 DEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEK 371
VP VK +T D+ KYTI DVV+PLPG V YP + E Y
Sbjct: 633 RFVP---------TRVKALTEEDL--AKYTIFDVVMPLPGRDVAYPGGKLGERYREFLRV 681
Query: 372 DGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAK 431
DG++ + +E++ + G+YR++ P + W+++ Y
Sbjct: 682 DGLDPDNFVRKQREYT---LNGSYRKILHLPKELTWDVMHYT------------------ 720
Query: 432 LVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGAD 491
DP + QS+ +D L + P V D
Sbjct: 721 -----------------DPDVSLAQSD---EDKLLGFD------------PPV-----VD 743
Query: 492 SQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTL 531
GK MAL++ LTL ++ YATMA+RE+ KT TS + L
Sbjct: 744 QDGKFMALQIRLTLGTASYATMALREITKTETSSHYQMNL 783
>gi|147904720|ref|NP_001089667.1| pseudouridylate synthase 7 homolog [Xenopus laevis]
gi|71679816|gb|AAI00243.1| MGC115581 protein [Xenopus laevis]
Length = 653
Score = 281 bits (718), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 158/418 (37%), Positives = 227/418 (54%), Gaps = 51/418 (12%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+WP+ G + F LYKENKDT +A+ ++SK L I P F + GTKDKR+++ Q + V K
Sbjct: 241 SWPKARGSYCHFVLYKENKDTMDAINVLSKFLRIKPNIFSYMGTKDKRAITVQEIAVLKI 300
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
A +LA LNK L+ +LG+F Y K L LG+L GN FT+ LR + SE V++A SL
Sbjct: 301 TAQRLAHLNKCLMNFKLGNFTYQKSPLKLGELQGNHFTVVLRNITGTSEQVVQA-MTSLR 359
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKE 201
GFINY+G+QRFG+ +VPT+ VG +L+ W V +IL PR G E+ + + RE + +
Sbjct: 360 DIGFINYYGMQRFGTTAVPTYQVGRAILQSNWNEMVDLILKPRPGAEKGYLVQCREEWAK 419
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKKCP-GNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
D + L+KLP E +L+ L N + A IPR R+MY+HSYQS++WN+
Sbjct: 420 IKDPEAALKKLPVKRCLEGQLLRGLAMYGLKNIVSAFGIIPRNNRLMYIHSYQSYVWNNM 479
Query: 261 ASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHP 320
S R+++ G + VV GDLV KGD
Sbjct: 480 VSKRIEEFGLK-VVPGDLVL-KGD------------------------------------ 501
Query: 321 DGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESL 380
V + N YTI+D+V+PLPG VIYP + +A Y + D +++
Sbjct: 502 -------TAVQVEEGNVDNYTINDIVMPLPGFDVIYPKHKIAAAYEEILAADNLDIKNMR 554
Query: 381 HNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKE 438
H VK++ S++G YR++ P D WE+++Y D PL +TDLDK+ L KE
Sbjct: 555 HRVKDY---SLSGAYRKIVICPQDVSWEVVSYDDPKIPLVQTDLDKLEGKALPEYNKE 609
Score = 46.6 bits (109), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 491 DSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
+ +GK ALK+ +LP S YATMAIRE+LK TS+ LN
Sbjct: 607 NKEGKYRALKMEFSLPPSTYATMAIREVLKMDTSIKNQTQLN 648
>gi|47224379|emb|CAG08629.1| unnamed protein product [Tetraodon nigroviridis]
Length = 582
Score = 281 bits (718), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 172/511 (33%), Positives = 250/511 (48%), Gaps = 106/511 (20%)
Query: 24 WPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQR 83
WP+ G F F LYKENKDT +A+ ++SK L + P F + GTKDKR+++ Q + V K
Sbjct: 172 WPKSRGSFCHFVLYKENKDTMDAINVLSKFLRLRPNMFSYMGTKDKRAITVQEIAVHKIT 231
Query: 84 ASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGR 143
A +L LNK LI +++G+FCY L LG+L GN FT+ +R + ++ + + SLG+
Sbjct: 232 AERLQHLNKCLINLKVGNFCYKNHPLKLGELQGNHFTVVIRN-ISGTDAQVNQALTSLGQ 290
Query: 144 NGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKET 202
GFINY+G+QRFG+ +VPTH VG +L+ W V +IL PR G E+ + + RE + +T
Sbjct: 291 TGFINYYGMQRFGTTAVPTHHVGRAILKNNWSEVVDLILKPRPGAEKEFLVRCREEWAKT 350
Query: 203 DDIDGTLRKLPRHLVAERAILQCLKKC-PGNYLQALKAIPRTLRMMYVHSYQSFLWNHAA 261
D + L+KLP E +L+ L N + A IPR R+MYVHSYQS +WN
Sbjct: 351 QDPEAALKKLPNKRCVEGQLLRGLSMYGKNNIVTAFGLIPRNNRLMYVHSYQSLVWNTMV 410
Query: 262 SARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPD 321
S R+ G + V GDL+ KG ++H+ E ++
Sbjct: 411 SRRIDAFGLK-AVEGDLIL-KG-----------------------TTAHVLSAEEAEN-- 443
Query: 322 GRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLH 381
Y+I D+V+PLPG VIYP + V Y L DG+++ + H
Sbjct: 444 ------------------YSIHDIVMPLPGYDVIYPSHHVGNGYKELLSADGLDIDKMKH 485
Query: 382 NVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEA 441
VK++ S+ G YRR+ +P D WE++ Y D L +D + I++ + A
Sbjct: 486 KVKDY---SLAGAYRRIVIRPTDVSWEVINYDDPRISLVHSDFE---------ILENKPA 533
Query: 442 VCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKL 501
NK+ GK AL++
Sbjct: 534 PVFNKD----------------------------------------------GKYRALRM 547
Query: 502 GLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
+LP S YATMAIRE+LK TS+ LN
Sbjct: 548 EFSLPPSSYATMAIREVLKLDTSIKKQTQLN 578
>gi|19112604|ref|NP_595812.1| pseudouridine synthase (predicted) [Schizosaccharomyces pombe
972h-]
gi|12230852|sp|O74343.1|YH2X_SCHPO RecName: Full=Putative pseudouridine synthase C1A4.09
gi|3393022|emb|CAA20114.1| pseudouridine synthase (predicted) [Schizosaccharomyces pombe]
Length = 680
Score = 280 bits (717), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 178/521 (34%), Positives = 269/521 (51%), Gaps = 93/521 (17%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+W G++ FHLYKEN+D+ + LG I+++L + R+ AGTKD+R V+ QRV +
Sbjct: 232 SWKALGGEYCHFHLYKENRDSMDCLGKIARLLKVPTRTLSIAGTKDRRGVTCQRVAIHHV 291
Query: 83 RASKLAALN-----KRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKAS 137
RAS+LA LN G LG++ Y L LG L GN F I +R V+ E V++A
Sbjct: 292 RASRLAQLNSGSLKNSTYGFLLGNYSYKNSNLRLGDLKGNEFHIVVRNVITPKEKVVEA- 350
Query: 138 ANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKARE 197
NSL +GFINYFGLQRFG+ SV TH +G LL+ +WK AV +IL PR + +A +
Sbjct: 351 LNSLKEHGFINYFGLQRFGTSSVGTHTIGVRLLQSDWKGAVDLILSPRPEHTGSVKEAID 410
Query: 198 YYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGN---YLQALKAIPRTLRMMYVHSYQS 254
+ T D + +LR LPR ++AE +IL+ + GN YL A + IPR LR +Y H+YQS
Sbjct: 411 LWHSTHDAEASLRILPRRMIAESSILETWSRS-GNQTDYLGAFQRIPRHLRSIYPHAYQS 469
Query: 255 FLWNHAASARVQKHGTEHVVVGDLVF-CKGDDTEKELGCVNPEFEYESSNDADDSSHLDE 313
++WN AS R++ G + VVGDLV+ + + ++ V+PE A D L++
Sbjct: 470 YVWNRVASWRIKNLG-DRPVVGDLVYSTESNGLSQKSPIVDPE--------APDL--LED 518
Query: 314 VPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHL---AE 370
+P + R + ++N+ ++I D+VLPLPG VIYP N+ ++Y + A
Sbjct: 519 LPVSSKLSAR-----PIEEDEVNN--FSIYDIVLPLPGRNVIYPKNETFDIYKSVMNEAS 571
Query: 371 KDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKA 430
D +N++ + S+ G+YR++ +P + E+ + Y + + L TD D++
Sbjct: 572 LDPLNMSRKDREL------SLPGDYRKLLVRPENMEFNFIKYDNMEQQLILTDKDRL--- 622
Query: 431 KLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGA 490
EN + + EV
Sbjct: 623 --------------------------------------ENRSISVSSEV----------- 633
Query: 491 DSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTL 531
GK A+ L LPSS YATMA+RE L+T+T+ + L
Sbjct: 634 ---GKHTAVTLKFVLPSSAYATMALREALRTATASGDQRML 671
>gi|367000924|ref|XP_003685197.1| hypothetical protein TPHA_0D01220 [Tetrapisispora phaffii CBS 4417]
gi|357523495|emb|CCE62763.1| hypothetical protein TPHA_0D01220 [Tetrapisispora phaffii CBS 4417]
Length = 682
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 191/525 (36%), Positives = 275/525 (52%), Gaps = 80/525 (15%)
Query: 17 DSRGSENWPEQLGK-FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQ 75
D+ G ENW K F+ F L+KENKDT +A+ LI K L I + +AGTKD+R V+ Q
Sbjct: 207 DANGVENWGYGPSKEFIHFTLHKENKDTMQAVNLICKFLRIPTKMIRYAGTKDRRGVTVQ 266
Query: 76 RVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGV-----VVDS 130
R+++ K + +L ALNK L G+ +G + + E L LG L GN F IT+R V DS
Sbjct: 267 RLSISKIKLDRLNALNKTLRGMLIGGYEFKDESLNLGDLSGNEFIITIRDVKTKESSTDS 326
Query: 131 -EDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGER 189
ED + S+ +NGFINYFG+QRFG+ S+ TH+VG LL W+ A +IL +E
Sbjct: 327 LEDTLSKGCESINKNGFINYFGMQRFGTFSISTHVVGRELLMENWEKAANLILSDQENVL 386
Query: 190 NEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCL----KKCPGNYLQ-----ALKAI 240
+ +AR+Y+++T D GTL+ +P +AE+A+L L K+ G+Y A+ I
Sbjct: 387 PKSKEARQYWEKTKDAAGTLKIMPHDCMAEKALLYSLASQEKESSGDYSSNSYYIAIMKI 446
Query: 241 PRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYE 300
PR LR MYVH+YQSF+WN AS R+ G + +VGDLV +E+E V E
Sbjct: 447 PRNLRTMYVHAYQSFIWNAVASKRLASFGPKP-IVGDLVI-----SEEEQSRVTVE---- 496
Query: 301 SSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMN- 359
+DS+ +E D + + +T+ DI SGK+TI D+VLP PG + YP N
Sbjct: 497 -----EDSNEFEE----DTNQAKFIRARPLTSEDIESGKFTIADIVLPTPGFDIKYPENP 547
Query: 360 DVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPL 419
++ + Y L +D ++ T V++F SM G+YR V P + E++++ Y + + L
Sbjct: 548 ELYKAYVDLLAQDNMDPTNMRRKVRDF---SMAGSYRNVIHIPQEMEYKIVKYKESTQQL 604
Query: 420 AETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEV 479
TDL E + + KD S+ KD KL E
Sbjct: 605 VNTDL---------------EMLNNKRAKD------NSQKYMKD-KL-----------ER 631
Query: 480 KQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTS 524
P D G + A+ + L S YATM +REL+K TS
Sbjct: 632 YMP--------DKGGDKTAVVIKFKLGVSAYATMLLRELMKLETS 668
>gi|326428067|gb|EGD73637.1| hypothetical protein PTSG_12299 [Salpingoeca sp. ATCC 50818]
Length = 728
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 177/504 (35%), Positives = 252/504 (50%), Gaps = 86/504 (17%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G++ F L KEN DT + LIS+ L P+ +AGTKDKR+++TQR+ + + RA +LA
Sbjct: 283 GQYCHFTLCKENMDTNACVRLISRKLRCKPKELSYAGTKDKRAITTQRMCIRRVRAPRLA 342
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
LN+ L G+ LGDF Y L LG GNRF I LR E + +A SLG NGFIN
Sbjct: 343 CLNRCLRGMTLGDFKYENAYLRLGDHQGNRFEIVLRNCTGTDEQITQA-LTSLGTNGFIN 401
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDDIDGT 208
YFG+QRFG +VPTH VG +L+ +K A+ ++L P + +A E+Y T D
Sbjct: 402 YFGMQRFGVCAVPTHAVGLAMLKRNFKQAIHLLLPPNARLHDGSDRACEHYHRTGDAHRA 461
Query: 209 LRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKH 268
L +PR ER ILQ L+K P + AL+ +PR R +Y+H+YQS +WN S R++
Sbjct: 462 LVMMPRKCDVERTILQTLEKQPNGFATALQTLPRLHRTLYMHAYQSMVWNRVVSLRLRTF 521
Query: 269 GTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVK 328
G + V+VGDLV+ K + +F ++ D R
Sbjct: 522 GRK-VLVGDLVYNK-----------DVKFNIRAA------------------DQRKKHAV 551
Query: 329 TVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSI 388
TVTA ++ KYTI DV++P+PG V YP N+V ++Y + +DG+++ H + E
Sbjct: 552 TVTAETLH--KYTIHDVLMPIPGQDVPYPNNEVRDMYASVLAEDGLDIDNLPHYILE--- 606
Query: 389 TSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEK 448
+ G+ R + P + W + Y D PL ++ +D++
Sbjct: 607 CVLNGDLRYMITLPGNVTWRTMRYDDVTVPLLQSPIDRL--------------------- 645
Query: 449 DPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSS 508
AA K + P+V + G+ AL LG TL S
Sbjct: 646 ----------------------QAAAEGKTLPDPNVPT-------GQYRALILGFTLDVS 676
Query: 509 CYATMAIRELLKTSTSVAFHKTLN 532
CYATMAIRE+LKT T AF LN
Sbjct: 677 CYATMAIREVLKTPTDKAFQSALN 700
>gi|157133914|ref|XP_001663070.1| tRNA pseudouridine synthase D [Aedes aegypti]
gi|108881439|gb|EAT45664.1| AAEL003071-PA [Aedes aegypti]
Length = 723
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 182/536 (33%), Positives = 265/536 (49%), Gaps = 107/536 (19%)
Query: 15 PFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVST 74
P D R WP F F LYKEN+DT +A ++++L P +F +AGTKD+R+ +T
Sbjct: 203 PGDRREKWLWPH---PFTHFLLYKENEDTIQATSQLAELLKCSPSAFAYAGTKDRRAKTT 259
Query: 75 QRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVI 134
Q V+V + +K+ A ++ + +G+FC+ L LGQL GNRF I LR V + E +I
Sbjct: 260 QWVSVKQFNPNKIVAAASKIRQLMVGNFCFKPTTLKLGQLRGNRFRIALRQVSAE-ESII 318
Query: 135 KASANSLGRNGFINYFGLQRFG-SGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEIS 193
+ S S GFINYFGLQRFG S +VPT+ VG +L+G W A +IL PR+ + +
Sbjct: 319 RESMESFQEKGFINYFGLQRFGNSATVPTYKVGIAILKGCWDEACSLILKPRDNDHWYMK 378
Query: 194 KAREYYKETDDIDGTLRKL-PRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSY 252
RE ++++ D L KL P++ E+ +L L +Y AL+ IPR +R++Y HSY
Sbjct: 379 ACREEFQKSRDPSSALDKLSPKNKSIEKQLLIWLVSNKNDYKGALQRIPRNVRLLYCHSY 438
Query: 253 QSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLD 312
QS +WN AS R+++ G + ++ GDLV+ D + D
Sbjct: 439 QSLIWNRVASRRLKEFGYQ-LIPGDLVYV-------------------------DKTAED 472
Query: 313 EVPETDHPDGR-----------------HNLVKTVTAADINSGKYTIDDVVLPLPGSRVI 355
E+P D P + NLVK +T ADI SG+Y+I DVVLPLPG +
Sbjct: 473 EMPIEDAPVEQTENAPEESEEPSETSVFKNLVKPLTEADIASGQYSIFDVVLPLPGHDIT 532
Query: 356 YPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDG 415
YP ND + Y L +DG++ + K+ S+ G YR++ KP + +WEL TY D
Sbjct: 533 YPANDCGKWYEDLLAEDGLSSEKLKGKTKK---ESLGGAYRKMIIKPENLKWELTTYTDP 589
Query: 416 NKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAAC 475
+ L ++DL+K+ G K+++
Sbjct: 590 METLIQSDLEKLK---------------GEKKRE-------------------------- 608
Query: 476 AKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTL 531
D K + L L PSS YATMA+RE+LK TS +TL
Sbjct: 609 ------------AKKDGSNKALILDFQL--PSSAYATMALREILKVDTSALHQRTL 650
>gi|348687251|gb|EGZ27065.1| hypothetical protein PHYSODRAFT_293156 [Phytophthora sojae]
Length = 767
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 174/484 (35%), Positives = 271/484 (55%), Gaps = 35/484 (7%)
Query: 6 KKRKERGDNPFDSRGSEN----WPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSF 61
KKRK+ D RG N WP+ +L+F LYK N +T + ++K + +F
Sbjct: 286 KKRKD-----MDQRGGNNARAPWPKNRPDYLQFVLYKRNMETNSVMMQLAKAMNSNVANF 340
Query: 62 GFAGTKDKRSVSTQRVTVFKQRASKLAALNKR-----LIGIRLGDFCYVKEGLLLGQLLG 116
+AGTKDKR ++TQ TV++ KL LN+ +G+ YV E L LG L G
Sbjct: 341 TYAGTKDKRGITTQLCTVYRGSKEKLETLNRAGRDLDSFNFLVGNATYVPERLNLGDLRG 400
Query: 117 NRFTITLRGVVVD---SEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGE 173
NRF++ +R + D S++ I + S G +GFINYFGLQRFG+ ++ TH +G +L+ +
Sbjct: 401 NRFSLAIRDLPDDETISDEKIHDAVRSWGEHGFINYFGLQRFGTKAIATHEIGRAILQRD 460
Query: 174 WKSAVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCP-GN 232
K V+++L P+EG+ +I +AR+ ++E D+ L+ LP +L+AERA+LQ L+
Sbjct: 461 HKRVVELLLSPQEGDATKIREARQAFQENQDVGAALKALPPYLIAERAVLQGLRAHGLTA 520
Query: 233 YLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGC 292
Y A+++IPR LRMMY H+YQS++WN AS R+ + E VVGDLV TE+ +
Sbjct: 521 YATAIQSIPRHLRMMYTHAYQSYVWNTVASERLTEFSREAPVVGDLVIPHDKMTEEYVD- 579
Query: 293 VNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGS 352
+ E + D +D + + P T R + TV A+ N +Y+I DVVLPLPG
Sbjct: 580 ---DNENGDAGDDEDEAPASKKPRTSAEASRPDASVTVVTAE-NLSQYSIYDVVLPLPGY 635
Query: 353 RVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTY 412
++YP N + + Y + + DG++ ++L S + G+YR V +KP+D + EL +
Sbjct: 636 SIMYPENALKQRYEEIMKADGVDF-QALERATN-SEYHLPGSYRHVLRKPVDVKHELKRF 693
Query: 413 IDGNKPLAETDLDKIA-KAKLVNIV-KEEEAVCGNKEKDPS--------DCMKQSESLSK 462
D PL ETD+D++A +A +I + A+C + PS + +KQS +L
Sbjct: 694 NDPTVPLLETDVDRLAGRAAQASIPDAKSRALCLEFQLGPSSYATMAVRELLKQSSNLDV 753
Query: 463 DIKL 466
++L
Sbjct: 754 QLQL 757
>gi|449549822|gb|EMD40787.1| hypothetical protein CERSUDRAFT_131054 [Ceriporiopsis subvermispora
B]
Length = 811
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 164/432 (37%), Positives = 238/432 (55%), Gaps = 45/432 (10%)
Query: 30 KFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFK-------- 81
+++ F + K N+DTQ+AL +S+ML + AGTKDKR V+ QRV++ +
Sbjct: 316 QYVHFTMQKTNRDTQDALAHLSRMLKCNVKDLSVAGTKDKRGVTVQRVSLRRGNKTVEDV 375
Query: 82 -------QRASKLAALNKRL--IGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSED 132
R L + R GIR+ DF Y K L LG L GN F ITLR V DS D
Sbjct: 376 WTMINGLNRGRSLEEIMTRRGERGIRVADFNYRKASLELGMLKGNAFIITLRNVQADSSD 435
Query: 133 VIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEI 192
+ + N++ GFINY+G+QRFG+ ++PTH +G LL+ +W AV +IL R GE ++
Sbjct: 436 TLDRAMNTIKDKGFINYYGMQRFGTAAIPTHSIGLALLKSDWHKAVSLILRHRPGEHPDV 495
Query: 193 SKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPG---NYLQALKAIPRTLRMMYV 249
AR+ + D+D L +PR +VAER IL+ +K G N + AL IPR LR+MYV
Sbjct: 496 VAARDAWLAEGDLDKALELMPRRVVAERCILESYQKQGGDTRNAMGALSTIPRNLRLMYV 555
Query: 250 HSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDA-DDS 308
H+YQS++WN S R++ HG + VVGDLVF D TEK E + + + DA
Sbjct: 556 HAYQSYVWNAIVSERIKMHGADKPVVGDLVF-DTDSTEK-----TAEEDADVAMDAVQGD 609
Query: 309 SHLDE---VPETDHPDGRHN----------LVKTVTAADINSGKYTIDDVVLPLPGSRVI 355
LDE V ++ GR + VKT+T D++ KY+I DV++PLPG V
Sbjct: 610 VPLDEKVAVEDSAENSGRSSKRSRKPWEPPRVKTLTEEDLD--KYSIFDVIMPLPGKDVA 667
Query: 356 YPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDG 415
+P + E Y DG++ + KE+ S+ G+YR++ +P + W +L Y D
Sbjct: 668 FPGGTLGERYKEFLRADGLDPNNFVRKQKEY---SLGGSYRKILHQPKELSWSVLRYTDP 724
Query: 416 NKPLAETDLDKI 427
+ PLA+ D D++
Sbjct: 725 DVPLAQADEDQL 736
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 27/39 (69%)
Query: 494 GKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
GK +AL++ LTL ++ YATMA+RE+ KT TS + L
Sbjct: 748 GKFVALQIRLTLGTAAYATMALREVTKTETSSHYQTALT 786
>gi|393215736|gb|EJD01227.1| tRNA pseudouridine synthase D [Fomitiporia mediterranea MF3/22]
Length = 827
Score = 278 bits (711), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 169/453 (37%), Positives = 248/453 (54%), Gaps = 50/453 (11%)
Query: 2 GRNSKKR-KERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRS 60
GR++K+ ++ G P +RG N+P ++ F L K N+D Q+AL +S++L +
Sbjct: 329 GRDAKRGGRDHGQKP--TRG--NYP----PYIHFTLQKTNRDNQDALNHLSRLLHCSIKD 380
Query: 61 FGFAGTKDKRSVSTQRVTV----------------FKQRASKLAALNKR-LIGIRLGDFC 103
AGTKDKR V+ QRV + + R S A+++R G+R+ DF
Sbjct: 381 LSVAGTKDKRGVTVQRVALRRGNKTVEDVWKMANGYPGRRSLEKAVSQRGERGVRVADFK 440
Query: 104 YVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTH 163
Y + GL LG L GN F ITLR V V+ D + + SL GFINY+G+QRFG+ S+PTH
Sbjct: 441 YGRAGLDLGMLKGNTFIITLRNVRVEPLDTLDKAMESLKHKGFINYYGMQRFGTASIPTH 500
Query: 164 LVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAIL 223
+G L+ +WK A +IL R GE ++ AR+ + ++D L PR +VAER IL
Sbjct: 501 SIGLAFLQCDWKRAADLILRHRPGEHPDVVAARDAWLIEKNLDKALSLFPRRVVAERCIL 560
Query: 224 QCLKKCPG---NYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVF 280
+ KK G N + AL IPR LR+MYVH+YQS++WN S R++ HG E VVGDLV+
Sbjct: 561 ESFKKMKGDTRNVMGALSTIPRNLRLMYVHAYQSYVWNAIVSERIRMHGAEKPVVGDLVY 620
Query: 281 ------CKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAAD 334
K DD+ ++ E + + + SS + P VKT++ D
Sbjct: 621 EQEGGRLKLDDSTEDA----EELDLDEEGAPNQSSRKQKRPWV------QPQVKTLSEED 670
Query: 335 INSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGN 394
++ KYTI DV++PLPG V YP + E Y + DG++ K++ ++TG
Sbjct: 671 VD--KYTIFDVIMPLPGKDVAYPGGALGERYREFLKMDGLDPDNFSSKHKDY---NLTGA 725
Query: 395 YRRVFQKPMDFEWELLTYIDGNKPLAETDLDKI 427
YR++ KP D W +L Y D + PLA++D DK+
Sbjct: 726 YRKIILKPKDLSWTVLRYTDPDVPLAQSDEDKL 758
>gi|213407876|ref|XP_002174709.1| pseudouridine synthase [Schizosaccharomyces japonicus yFS275]
gi|212002756|gb|EEB08416.1| pseudouridine synthase [Schizosaccharomyces japonicus yFS275]
Length = 683
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 169/427 (39%), Positives = 231/427 (54%), Gaps = 33/427 (7%)
Query: 6 KKRKERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAG 65
+KR R + D R S W G++ FHLYKEN+DT + LG I+++L I R AG
Sbjct: 226 RKRNSRQNR--DPRMS--WKALGGEYCHFHLYKENRDTMDCLGRIARLLKIPTRQLLIAG 281
Query: 66 TKDKRSVSTQRVTVFKQRASKLAALNKRLI-----GIRLGDFCYVKEGLLLGQLLGNRFT 120
TKD+R ++ QRV + + R+++L LN+ I G RLG+F Y + GL LG L GN F
Sbjct: 282 TKDRRGITCQRVAIRRIRSTRLVQLNQGAIANPTYGFRLGNFSYKQRGLALGDLQGNEFH 341
Query: 121 ITLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM 180
+ LR V ED I S + +GFINYFGLQRFG+ SV TH VG LLR WK+A+++
Sbjct: 342 LILRNVQT-PEDQINESLTKVKADGFINYFGLQRFGTSSVGTHEVGIELLRSNWKAAIEL 400
Query: 181 ILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKK--CPGNYLQALK 238
IL R +A E + D L KLPR VAE +IL+ + NYL A +
Sbjct: 401 ILSQRPEHSGSAKEAMEIWHSKHDPAAALAKLPRRFVAESSILETFSREGNTTNYLGAFQ 460
Query: 239 AIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFE 298
IPR LR +Y H+YQS++WN S R+Q++G + V GDLV + V+PE
Sbjct: 461 RIPRHLRSIYAHAYQSYVWNRVVSWRIQQYGLQ-VREGDLVLVSQSEVGSSSKLVDPE-- 517
Query: 299 YESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPM 358
A D +++V +D P + K VT D+ KYTI DVVLPLPG VIYP
Sbjct: 518 ------AKDL--VEDVIVSDKP-----VAKIVTKEDLE--KYTIYDVVLPLPGRSVIYPK 562
Query: 359 NDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKP 418
N+ + Y + + ++ +E S+ G+YRR+ K EW +L Y D +
Sbjct: 563 NETFDTYKRIMAEHELDPENMARKDREL---SLPGDYRRLVVKANKLEWSILKYDDAEQQ 619
Query: 419 LAETDLD 425
L TD D
Sbjct: 620 LLPTDRD 626
>gi|298715208|emb|CBJ27880.1| tRNA Pseudouridine Synthase D domain-containing protein [Ectocarpus
siliculosus]
Length = 1011
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 207/584 (35%), Positives = 285/584 (48%), Gaps = 84/584 (14%)
Query: 24 WPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQR 83
WPE +F RF LYKEN DT A+ I K L + G+AGTKDKR V+ Q TV ++
Sbjct: 383 WPEGRPEFCRFVLYKENSDTMGAVSRICKHLRFSSKVVGYAGTKDKRGVTAQWCTVKRKS 442
Query: 84 ASKLAALNKRLIGIR-----LGDFCYVKEGLLLGQLLGNRFTITLRGVVVDS-------- 130
+L + N+ L + LG+F YV E L LG L GNRF I LR + + S
Sbjct: 443 IEELRSFNRPLGAFQGSIVLLGNFSYVAEPLKLGDLSGNRFGIVLRNLTLPSGGGNGTGN 502
Query: 131 --------------------------ED----VIKASAN----------SLGRNGFINYF 150
ED V++A A + GFINYF
Sbjct: 503 GAENGAENGAGGGQDASADDASKKEAEDPEAAVVEAGAKLKETVDRRCAWVKERGFINYF 562
Query: 151 GLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKARE--YYKETDDIDGT 208
GLQRFGSG PT VG +L+ +W AV++I+ PR GE NE + A + Y K DI GT
Sbjct: 563 GLQRFGSGGAPTSEVGLAMLKEDWAGAVRLIMTPRMGE-NEATHASKVHYLKNPTDIQGT 621
Query: 209 LRKLPRHLVAERAILQC-LKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQK 267
L KLP + AE++++Q LK P ++ ALKA+P+ L++MY+H++QS LWN AAS R++
Sbjct: 622 LNKLPFFMDAEKSMMQALLKGGPNAHIDALKAVPKNLQLMYLHAFQSLLWNLAASERIKL 681
Query: 268 HGTEHVVVGDLVFCKGDDT---EKELGCVNP-EFEYESSNDADDSSHLDEVPETDHPDGR 323
+G + V GDLVF + E + V+P D DE E P+ +
Sbjct: 682 YGRDAAVEGDLVFPRDSPAAAIEDDATLVDPAIGAAAVDAAEGDGDGEDEGGEGQQPEAK 741
Query: 324 HN--------LVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGIN 375
V VT D+ G + + DVVLP+PGS V YP N V E Y E+ G+
Sbjct: 742 RAKTAGSSLPPVHVVTKEDVEEGTFRVTDVVLPMPGSGVTYPTNGVKECYTKALEERGV- 800
Query: 376 LTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNI 435
TE+ + + G YRR+ Q P D +WEL Y D L TD+D + I
Sbjct: 801 -TEACFSSSTQKAFKLGGAYRRLLQVPKDMQWELKRYDDHTLHLINTDIDDLLDIDDAKI 859
Query: 436 -------VKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVC 488
K++E +++ PS K+ E SK + + A V + + E++
Sbjct: 860 AKEDAEKKKKKEEEADGEKQPPS--AKKEEGDSKATTPDAMDVDGA----VPESNGEALR 913
Query: 489 GADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
A G+ L L TLPSS YATM +RE+ + TS FH +LN
Sbjct: 914 PALRGGRFHGLCLHFTLPSSSYATMCLREVTQQDTSTIFHTSLN 957
>gi|387017900|gb|AFJ51068.1| Pseudouridylate synthase 7-like protein [Crotalus adamanteus]
Length = 652
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 171/513 (33%), Positives = 244/513 (47%), Gaps = 108/513 (21%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+WP+ G + F LYKENKDT +A+ ++SK L + P F + GTKDKR+++ Q++ V K
Sbjct: 240 SWPKSRGNYCHFVLYKENKDTMDAINVLSKYLRVKPTIFSYMGTKDKRAITVQKIAVLKI 299
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVV-VDSEDVIKASANSL 141
A +LA LNK L+ +LG+F Y L LG+L GN FT+ LR + D E ++ + SL
Sbjct: 300 TAQRLAHLNKCLMNCKLGNFSYKNHPLKLGELQGNHFTVGLRNITGTDGE--VQQAMQSL 357
Query: 142 GRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYK 200
GFINY+G+QRFG+ ++PT VG +L+ W + +IL PR G ER+ + K RE +
Sbjct: 358 KEIGFINYYGMQRFGTTAIPTFQVGRAILQSNWNEVIDLILKPRPGVERSSLVKCREEWA 417
Query: 201 ETDDIDGTLRKLPRHLVAERAILQCLKKCP-GNYLQALKAIPRTLRMMYVHSYQSFLWNH 259
T D + L E +L L K N + A I R R+MY+HSYQS++WN+
Sbjct: 418 RTKDPAAAFKTLLNKRCVEGQLLWGLSKYGLKNIVSAFNMITRNYRLMYIHSYQSYVWNN 477
Query: 260 AASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDH 319
S R++++G + GDLV G E G V+
Sbjct: 478 MVSERIEEYGL-RAIPGDLVLKGGTAVYIEEGDVD------------------------- 511
Query: 320 PDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTES 379
YTI DVV+PLPG VIYP + + E Y + D +++
Sbjct: 512 -------------------NYTIHDVVMPLPGFDVIYPKHKIGESYKEMLVSDNLDINNM 552
Query: 380 LHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEE 439
H ++++ S++G YR++ +P WEL+ Y D PL TDLDK+
Sbjct: 553 KHKIRDY---SLSGAYRKIIIRPQSVSWELIEYDDPKIPLFTTDLDKL------------ 597
Query: 440 EAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMAL 499
E K P V + G K AL
Sbjct: 598 --------------------------------------EGKLPPVLARAG-----KYKAL 614
Query: 500 KLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
K+ +LP S YATMAIRE+LK TS+ LN
Sbjct: 615 KMEFSLPPSAYATMAIREVLKLDTSIKSQSQLN 647
>gi|146416455|ref|XP_001484197.1| hypothetical protein PGUG_03578 [Meyerozyma guilliermondii ATCC
6260]
Length = 683
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 184/545 (33%), Positives = 275/545 (50%), Gaps = 93/545 (17%)
Query: 1 MGRNSKKRK---ERGDNPFDSRGSENWPEQLGKF---LRFHLYKENKDTQEALGLISKML 54
+ RN+ R+ + N D G N+ LG F L F +YKEN++T E ISK L
Sbjct: 201 LARNNSARRRNPQESINHVDENGVVNYG--LGPFKNYLHFTVYKENRETMEVASTISKFL 258
Query: 55 GILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQL 114
I ++ G+AGTKD+R V+ QR ++ K + +++++LNK L + LG F Y L LG L
Sbjct: 259 RIPSKNIGYAGTKDRRGVTCQRFSILKGKVARVSSLNKGLKNVVLGGFTYEDLPLGLGDL 318
Query: 115 LGNRFTITLRGVVV----DS-EDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATL 169
GN F IT+R V DS E +I+ NSL + GFINY+G+QRFG+ S+ TH +G +
Sbjct: 319 KGNEFVITIRDVKPFNDKDSVETIIEKCFNSLQQKGFINYYGMQRFGTFSISTHELGIKI 378
Query: 170 LRGEWKSAVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKK- 228
L+ +WK AV ++L +E E AR + ET + TL+K+PR AE +IL L+K
Sbjct: 379 LQEDWKGAVDLVLSEQEIVAPESIDARACWAETRNPSLTLKKMPRRCTAEYSILSVLEKE 438
Query: 229 --------CPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVF 280
+Y +++ AIPR LR+MY H+YQS++WN S R + G + V VGDLV
Sbjct: 439 RLDKNEDYGSNSYFKSIMAIPRNLRIMYAHAYQSYIWNLVVSKRFEMFGMD-VQVGDLVL 497
Query: 281 CKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKY 340
+ + +E +FE D S + P +T DI + Y
Sbjct: 498 VQNEAPAQEKDVDGEDFE----EDVVTSKFVRARP--------------LTEEDIAASTY 539
Query: 341 TIDDVVLPLPGSRVIYPMND-VAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVF 399
TI D+VLP PG ++YP N+ + +VY + KDG++ + V+EF S+ G+YR +
Sbjct: 540 TIYDIVLPTPGFDILYPTNEKLMQVYTEVMAKDGLDPLKMNRRVREF---SLAGSYRHIM 596
Query: 400 QKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSES 459
KP + ++++ Y D N+P+ TDL+
Sbjct: 597 GKPTNLSYKIVKYDDPNEPMVRTDLELT-------------------------------R 625
Query: 460 LSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELL 519
L KD E A+E+ +G++ + L + LP S YATMA+RE +
Sbjct: 626 LKKD-------GEENVAREIDH----------QEGERTGVVLTMQLPVSSYATMALREFM 668
Query: 520 KTSTS 524
K TS
Sbjct: 669 KADTS 673
>gi|367009318|ref|XP_003679160.1| hypothetical protein TDEL_0A06170 [Torulaspora delbrueckii]
gi|359746817|emb|CCE89949.1| hypothetical protein TDEL_0A06170 [Torulaspora delbrueckii]
Length = 675
Score = 275 bits (702), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 186/524 (35%), Positives = 271/524 (51%), Gaps = 79/524 (15%)
Query: 17 DSRGSENWPEQLGK-FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQ 75
D+ G ENW K FL F LYKENKDT +A+ L++K L + R+ FAGTKD+R V+ Q
Sbjct: 205 DANGVENWGYGPTKDFLHFTLYKENKDTMDAVNLLTKFLRMPTRAIRFAGTKDRRGVTCQ 264
Query: 76 RVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVV--DS--- 130
R++V +L ALN+ L G+ G F + + L LG L GN F I +R V DS
Sbjct: 265 RLSVSHIGVDRLNALNRTLKGMVCGGFKFDDKSLNLGDLKGNEFVIVIRNAKVPDDSKMS 324
Query: 131 -EDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGER 189
E V++ L +NGF+NYFG+QRFG+ S+ TH VG LL G W+ A ++IL +
Sbjct: 325 LEQVVENGTKLLSQNGFVNYFGMQRFGTFSISTHAVGKELLSGHWEQAAELILSDQNNVL 384
Query: 190 NEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCL--KKCPGN------YLQALKAIP 241
+ +AR+ + ET D L+K+PR +AE A+L L ++ GN Y A+ IP
Sbjct: 385 PKSKEARQIWAETKDPTLALKKMPRQCLAENALLHSLSSQRKDGNNFSNNAYYTAVMKIP 444
Query: 242 RTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYES 301
R LR MYVH+YQS++WN AS R++ +G E V+ GDLV +S
Sbjct: 445 RNLRTMYVHAYQSYVWNAVASKRIELYGLE-VIEGDLVII------------------DS 485
Query: 302 SNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMN-D 360
S + ++ + D D + + +T ADI S KYTI+DVVLP PG V+YP N
Sbjct: 486 SKPREVEEVEEDEFDEDLRDAKFVRARPLTKADIESRKYTINDVVLPTPGFDVVYPANKS 545
Query: 361 VAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLA 420
+ + Y + ++D ++ + V++F S+ G+YR + QKP + E+++++Y + + L
Sbjct: 546 LLDFYVEIMKEDNMDPFDMKRKVRDF---SLAGSYRALIQKPTELEYKIVSYTEPTQQLV 602
Query: 421 ETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVK 480
TDL E + K KD S+ KD
Sbjct: 603 NTDL---------------EILNNQKGKD------NSQKYMKD----------------- 624
Query: 481 QPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTS 524
+E D G + A+ L L S YATMA+REL+K +S
Sbjct: 625 --KLERFV-PDKGGDKKAVILKFQLGVSAYATMALRELMKIESS 665
>gi|443927185|gb|ELU45704.1| pseudouridine synthase [Rhizoctonia solani AG-1 IA]
Length = 1407
Score = 275 bits (702), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 187/552 (33%), Positives = 272/552 (49%), Gaps = 109/552 (19%)
Query: 28 LGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVT--------- 78
L ++ F L K N+DTQ+ALG ++++L + PR AGTKDKR V+TQRV
Sbjct: 840 LPPYIHFTLQKTNRDTQDALGHLARLLKVPPRELSTAGTKDKRGVTTQRVCLKRGRFTVE 899
Query: 79 -VFK-------QRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLR------ 124
V+K +R+ + + G+R+ D Y K L LG L GN F ITLR
Sbjct: 900 DVWKITNSLTGRRSPEDVVKQRGERGVRVSDINYRKGYLELGMLKGNEFVITLRCYNFSV 959
Query: 125 -----------GVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGE 173
V +S +VI + SL NGFINY+G+QRFG+ ++PTH +G LLR +
Sbjct: 960 KFCKLIKHSNRNVKAESLEVIDKAMGSLKENGFINYYGMQRFGTSAIPTHSIGLALLRSD 1019
Query: 174 WKSAVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPG-- 231
W+ A ++L PR GE E R + E D++ LR +PR VAER IL+ KK G
Sbjct: 1020 WRLATSLLLRPRPGEYPETEAGRRAWTEEKDLEKALRLIPRRCVAERCILENYKKHGGTD 1079
Query: 232 -NYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFC--------- 281
N L L AIPR LR+MYVH+YQS++WN S R++ G VVGD+V+
Sbjct: 1080 RNLLGGLSAIPRNLRLMYVHAYQSYVWNAIVSERIKSFG-RTPVVGDVVYDDEGTDNSSE 1138
Query: 282 --KGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGK 339
+GD+ E E E D DD + ++V + R K A+ +
Sbjct: 1139 TREGDENEGETLDDAGENGKVVKEDIDDLGNEEKVRKEWKSGKRTAPRKVKILAEEDLPH 1198
Query: 340 YTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHN-VKEFSITSMTGNYRRV 398
Y++ D+V+PLPG+ V YP ++ +Y + DG++ + HN +E++ + G+YR++
Sbjct: 1199 YSMFDIVMPLPGTDVAYPGGELGNMYREFLKLDGLDPNDFKHNSAREYA---LGGSYRKI 1255
Query: 399 FQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSE 458
P W + Y D N PLA++D E+A+ G
Sbjct: 1256 IHHPKALSWTTMRYTDPNVPLAQSD---------------EDAILG-------------- 1286
Query: 459 SLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIREL 518
+ +P + D GK MAL++ LTL +S YATMA+RE+
Sbjct: 1287 --------------------LDKPMI------DIHGKFMALQIRLTLGTSAYATMALREV 1320
Query: 519 LKTSTSVAFHKT 530
KT TS +FH+T
Sbjct: 1321 TKTETS-SFHQT 1331
>gi|190347241|gb|EDK39480.2| hypothetical protein PGUG_03578 [Meyerozyma guilliermondii ATCC
6260]
Length = 683
Score = 274 bits (701), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 184/545 (33%), Positives = 275/545 (50%), Gaps = 93/545 (17%)
Query: 1 MGRNSKKRK---ERGDNPFDSRGSENWPEQLGKF---LRFHLYKENKDTQEALGLISKML 54
+ RN+ R+ + N D G N+ LG F L F +YKEN++T E ISK L
Sbjct: 201 LARNNSARRRNPQESINHVDENGVVNYG--LGPFKNYLHFTVYKENRETMEVASTISKFL 258
Query: 55 GILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQL 114
I ++ G+AGTKD+R V+ QR ++ K + +++++LNK L + LG F Y L LG L
Sbjct: 259 RIPSKNIGYAGTKDRRGVTCQRFSISKGKVARVSSLNKGLKNVVLGGFTYEDLPLGLGDL 318
Query: 115 LGNRFTITLRGVVV----DS-EDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATL 169
GN F IT+R V DS E +I+ NSL + GFINY+G+QRFG+ S+ TH +G +
Sbjct: 319 KGNEFVITIRDVKPFNDKDSVETIIEKCFNSLQQKGFINYYGMQRFGTFSISTHELGIKI 378
Query: 170 LRGEWKSAVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKK- 228
L+ +WK AV ++L +E E AR + ET + TL+K+PR AE +IL L+K
Sbjct: 379 LQEDWKGAVDLVLSEQEIVAPESIDARACWAETRNPSLTLKKMPRRCTAEYSILSVLEKE 438
Query: 229 --------CPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVF 280
+Y +++ AIPR LR+MY H+YQS++WN S R + G + V VGDLV
Sbjct: 439 RLDKNEDYGSNSYFKSIMAIPRNLRIMYAHAYQSYIWNLVVSKRFEMFGMD-VQVGDLVL 497
Query: 281 CKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKY 340
+ + +E +FE D S + P +T DI + Y
Sbjct: 498 VQNEAPAQEKDVDGEDFE----EDVVTSKFVRARP--------------LTEEDIAASTY 539
Query: 341 TIDDVVLPLPGSRVIYPMND-VAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVF 399
TI D+VLP PG ++YP N+ + +VY + KDG++ + V+EF S+ G+YR +
Sbjct: 540 TIYDIVLPTPGFDILYPTNEKLMQVYTEVMAKDGLDPLKMNRRVREF---SLAGSYRHIM 596
Query: 400 QKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSES 459
KP + ++++ Y D N+P+ TDL+
Sbjct: 597 GKPTNLSYKIVKYDDPNEPMVRTDLELT-------------------------------R 625
Query: 460 LSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELL 519
L KD E A+E+ +G++ + L + LP S YATMA+RE +
Sbjct: 626 LKKD-------GEENVAREIDH----------QEGERTGVVLTMQLPVSSYATMALREFM 668
Query: 520 KTSTS 524
K TS
Sbjct: 669 KADTS 673
>gi|365986691|ref|XP_003670177.1| hypothetical protein NDAI_0E01180 [Naumovozyma dairenensis CBS 421]
gi|343768947|emb|CCD24934.1| hypothetical protein NDAI_0E01180 [Naumovozyma dairenensis CBS 421]
Length = 673
Score = 274 bits (701), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 188/534 (35%), Positives = 273/534 (51%), Gaps = 90/534 (16%)
Query: 13 DNPFDSRGSENW---PEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDK 69
D D+ G ENW P + +FL F L+KENKDT EA+ I+K++ I + FAG KD+
Sbjct: 198 DQSKDANGVENWGYGPTK--EFLHFTLHKENKDTMEAVNTITKLMRIPNKLIRFAGNKDR 255
Query: 70 RSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVD 129
R+V+ QR++V K +L ALN+ L G+ +G + + L LG L GN F I +R V V
Sbjct: 256 RAVTCQRLSVSKIGVDRLNALNRTLKGLVIGGYKFEDTSLSLGDLNGNEFVIVIRDVSVS 315
Query: 130 S------EDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILD 183
E ++ SL GFINYFG+QRFG+ S+ TH +G LL W++AV +IL
Sbjct: 316 ETSALSLEQILANGCQSLSEKGFINYFGMQRFGTFSISTHEIGKELLLSNWENAVNLILS 375
Query: 184 PREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCL----KKCPGN-----YL 234
++ + +AR+ + ET D L+K+PR +AE +IL L K+ G Y
Sbjct: 376 DQDNVLPKSKEARQIWAETKDPVLALQKMPRQSLAENSILHSLSTQKKEEDGTFSSFAYY 435
Query: 235 QALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVN 294
A+ IPR LR MYVH+YQSF+WN AS R++ HG E +V GDLV DTE +
Sbjct: 436 TAIMKIPRNLRTMYVHAYQSFVWNAIASKRIELHGVE-LVEGDLVI----DTE---NTKS 487
Query: 295 PEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRV 354
P + E + +D + + K VT ADI+SGK++I DVVLP PG +
Sbjct: 488 PSAQDEEDDFDEDLREDEFIR-----------AKPVTQADIDSGKFSITDVVLPTPGFDI 536
Query: 355 IYPMN-DVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYI 413
IYP N ++ ++Y + KD ++ + V+EF SM G+YR++ +KP ++ ++ Y
Sbjct: 537 IYPTNEELRKLYTEIMAKDNMDPFDMRRKVREF---SMAGSYRKIIEKPEQLDYRIVHYS 593
Query: 414 DGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEA 473
+ L TDL+ + NN+
Sbjct: 594 SPTQQLVNTDLEIL------------------------------------------NNQV 611
Query: 474 A---CAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTS 524
A C K +K + D G + A+ L L +S YATMA+REL+K TS
Sbjct: 612 AKDNCQKYMKDKLERYI--PDKGGDKTAVILKFQLGTSAYATMALRELMKLETS 663
>gi|326911204|ref|XP_003201951.1| PREDICTED: pseudouridylate synthase 7 homolog [Meleagris gallopavo]
Length = 650
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 148/410 (36%), Positives = 222/410 (54%), Gaps = 57/410 (13%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+WP+ G + F LYKENKDT +A+ ++SK L + P F + GTKDKR+++ Q + V +
Sbjct: 238 SWPKSRGSYCHFVLYKENKDTMDAINVLSKFLRVKPNIFSYMGTKDKRAITVQEIAVLRI 297
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
A +LA LNK L+ +LG+F Y L LG+L GN FT+ LR + ++D I+ + NSL
Sbjct: 298 TAQRLAHLNKCLMNFKLGNFSYKNHPLKLGELQGNHFTVVLRN-ITGTDDQIEQAMNSLR 356
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKE 201
GFINY+G+QRFG+ +VPT+ +G +L+ W + +IL PR G E+ + K RE + +
Sbjct: 357 EIGFINYYGMQRFGTTAVPTYQIGRAILQNNWNEVMDLILKPRPGAEKGYLVKCREEWAK 416
Query: 202 TDDIDGTLRKLPRHLVAERAILQ-CLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
T D L+KLP E +L+ LK N + A IPR R+MY+HSYQS++WN+
Sbjct: 417 TKDPAAALKKLPVKRCVEGQLLRGLLKYGMKNIISAFGIIPRNNRLMYIHSYQSYVWNNM 476
Query: 261 ASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHP 320
S R++++G + V GDL
Sbjct: 477 VSKRIEEYGLK-AVPGDLT----------------------------------------- 494
Query: 321 DGRHNLVKTVTAADINSG---KYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLT 377
+K TA I G YTI DVV+PLPG VIYP + + E Y + D +++
Sbjct: 495 ------LKGATAVHIEEGDVHNYTIHDVVMPLPGFDVIYPKHKIGEAYKEMLVADNLDIN 548
Query: 378 ESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKI 427
H ++++ S++G YR++ +P + WE++ Y D PL TDLDK+
Sbjct: 549 NMRHKIRDY---SLSGAYRKIIIRPQNVSWEVVAYDDPRIPLFTTDLDKL 595
Score = 45.1 bits (105), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 492 SQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
+ GK ALK+ +LP S YATMAIRE+LK TS+ LN
Sbjct: 605 TDGKFRALKMEFSLPPSTYATMAIREVLKMDTSIKNQTQLN 645
>gi|313747563|ref|NP_001186468.1| pseudouridylate synthase 7 homolog [Gallus gallus]
Length = 650
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 148/410 (36%), Positives = 222/410 (54%), Gaps = 57/410 (13%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+WP+ G + F LYKENKDT +A+ ++SK L + P F + GTKDKR+++ Q + V +
Sbjct: 238 SWPKSRGSYCHFVLYKENKDTMDAINVLSKFLRVKPNIFSYMGTKDKRAITVQEIAVLRI 297
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
A +LA LNK L+ +LG+F Y L LG+L GN FT+ LR + ++D I+ + NSL
Sbjct: 298 TAQRLAHLNKCLMNFKLGNFSYKNHPLKLGELQGNHFTVVLRN-ITGTDDQIEQAMNSLR 356
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKE 201
GFINY+G+QRFG+ +VPT+ +G +L+ W + +IL PR G E+ + K RE + +
Sbjct: 357 EIGFINYYGMQRFGTTAVPTYQIGRAILQNNWNEVMDLILKPRPGAEKGYLVKCREEWAK 416
Query: 202 TDDIDGTLRKLPRHLVAERAILQ-CLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
T D L+KLP E +L+ LK N + A IPR R+MY+HSYQS++WN+
Sbjct: 417 TKDPAAALKKLPVKRCVEGQLLRGLLKYGMKNIISAFGIIPRNNRLMYIHSYQSYVWNNM 476
Query: 261 ASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHP 320
S R++++G + V GDL
Sbjct: 477 VSKRIEEYGLK-AVPGDLT----------------------------------------- 494
Query: 321 DGRHNLVKTVTAADINSG---KYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLT 377
+K TA I G YTI DVV+PLPG VIYP + + E Y + D +++
Sbjct: 495 ------LKGATAVHIEEGDVHNYTIHDVVMPLPGFDVIYPKHKIGEAYKEMLVADNLDIN 548
Query: 378 ESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKI 427
H ++++ S++G YR++ +P + WE++ Y D PL TDLDK+
Sbjct: 549 NMRHKIRDY---SLSGAYRKIIIRPQNVSWEVVAYDDPRIPLFTTDLDKL 595
Score = 45.1 bits (105), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 492 SQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
+ GK ALK+ +LP S YATMAIRE+LK TS+ LN
Sbjct: 605 TDGKFRALKMEFSLPPSTYATMAIREVLKMDTSIKNQTQLN 645
>gi|395328784|gb|EJF61174.1| tRNA pseudouridine synthase D [Dichomitus squalens LYAD-421 SS1]
Length = 818
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 161/435 (37%), Positives = 235/435 (54%), Gaps = 39/435 (8%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
N+P ++ F L K N+DTQ+AL +S+ L + AGTKDKR V+ QRV++ +
Sbjct: 322 NYP----PYIHFTLQKTNRDTQDALAHLSRTLHCNVKDLSVAGTKDKRGVTVQRVSLRRG 377
Query: 83 RAS-----KLA-ALNKRLI-----------GIRLGDFCYVKEGLLLGQLLGNRFTITLRG 125
+ K+A LN R G+R+ D Y K L LG L GN F ITLR
Sbjct: 378 NKTVEDVWKMANGLNGRRTMEEVMTQRGERGVRIADLNYRKASLELGMLKGNAFVITLRN 437
Query: 126 VVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPR 185
V VDS + + + N + GFINY+G+QRFG+ S+PTH +G LL+G+W AV +IL R
Sbjct: 438 VRVDSLETLDRAMNVIKTKGFINYYGMQRFGTASIPTHTIGLALLKGDWHRAVSLILRHR 497
Query: 186 EGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPG---NYLQALKAIPR 242
GE ++ AR + D+D L +PR +VAER IL+ KK G N + AL IPR
Sbjct: 498 PGEHPDVVAARNAWLVDKDLDRALDLMPRRVVAERCILESYKKQKGDTRNAMGALSTIPR 557
Query: 243 TLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVF---------CKGDDTEKELGCV 293
LR+MY+H+YQS++WN S R++ +G E VVGDLVF G+D E L
Sbjct: 558 NLRLMYIHAYQSYVWNAIVSERIRTYGAEKPVVGDLVFEGASSAKADADGEDVEIALDAA 617
Query: 294 NPEFEYESS-NDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGS 352
E E + D++ + VKT+T AD+++ Y+I DV++PLPG
Sbjct: 618 EGENSLEDKVANEDNAGTSSRSSKRSRKAWEPPKVKTLTDADLDN--YSIFDVIMPLPGK 675
Query: 353 RVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTY 412
V +P + E Y +DG++ + K++ ++ G+YR V P + W ++ Y
Sbjct: 676 DVDFPGGALGERYREFLRRDGLDPDNFVRKQKDY---TLGGSYRSVLHLPKELSWAVMKY 732
Query: 413 IDGNKPLAETDLDKI 427
D + PLA++D DK+
Sbjct: 733 TDPDVPLAQSDEDKL 747
Score = 42.0 bits (97), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 29/43 (67%)
Query: 490 ADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
+D GK +AL++ L L ++ YATMA+RE+ KT TS + +L
Sbjct: 755 SDENGKFIALQINLQLGTAAYATMALREVTKTETSSHYQTSLT 797
>gi|328853233|gb|EGG02373.1| hypothetical protein MELLADRAFT_91467 [Melampsora larici-populina
98AG31]
Length = 781
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 180/524 (34%), Positives = 260/524 (49%), Gaps = 96/524 (18%)
Query: 25 PEQLGKFLRFHLYKENKDTQEALGLISKML--GILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
P+ ++ F L K N++TQEAL ++S +L + R FG GTKDKRSVS QRV+ +
Sbjct: 308 PDTNPAYIHFTLQKTNRETQEALSILSNLLFSKNVSRDFGICGTKDKRSVSCQRVSYKRG 367
Query: 83 RA---------------SKLAALNKR-LIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGV 126
R K+ ++R GIR+GD Y L LG GNRF I LR V
Sbjct: 368 RKDIQQVWSTVNRIKKNQKVHGFSERGDKGIRIGDLTYEDHPLKLGDSKGNRFVIILRDV 427
Query: 127 VVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPRE 186
+ V+K + SL +GF+NYFG+QRFG+ +V THL+G +LL+ +W A+ +I+ +
Sbjct: 428 IPAKPTVLKEAVQSLSTSGFLNYFGMQRFGTTAVGTHLIGLSLLKADWDLAIDLIMRKKL 487
Query: 187 GERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPG--NYLQALKAIPRTL 244
GE ++ AR ++++ D TL +PR VAER ILQ K G + + AL +IP+ L
Sbjct: 488 GESQDVEHARSVWEQSQDAKATLELMPRRCVAERCILQYFSKKDGLTDKVGALASIPKNL 547
Query: 245 RMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCK--GDDTEKELGCVNPEFEYESS 302
+MMY+H+YQS++WNH S RV+ +G + VVGDLV G+D E +
Sbjct: 548 KMMYIHAYQSYIWNHVLSERVRLYGCDKPVVGDLVAVTTGGNDV------------VEVA 595
Query: 303 NDADD---SSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMN 359
D DD ++ D+VP V + YTI DVVLPL G ++ YP
Sbjct: 596 LDGDDETATTEKDKVPPV-----------KVLNDEAECKSYTIQDVVLPLIGFKIEYPKG 644
Query: 360 DVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPL 419
+ ++Y + ++DG++ E+ SM G YR++ P D ++ L Y D PL
Sbjct: 645 TLGQMYLDMMKRDGLDPENLRRGQAEY---SMAGAYRKILHMPTDVKFALYEYEDPELPL 701
Query: 420 AETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEV 479
+ D DK+ KL +P + ST+ C
Sbjct: 702 SFADEDKLIGMKL---------------PEPKEWT------------STDEANEDCK--- 731
Query: 480 KQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTST 523
K MALK+ TL SS YATMA+RE+LK+ T
Sbjct: 732 ---------------KNMALKVEFTLGSSAYATMALREILKSDT 760
>gi|340372887|ref|XP_003384975.1| PREDICTED: pseudouridylate synthase 7 homolog [Amphimedon
queenslandica]
Length = 602
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 158/413 (38%), Positives = 224/413 (54%), Gaps = 55/413 (13%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+W + G +++F LYKEN+D+ + + +SK+L + F +AGTKDKR++++Q VT ++
Sbjct: 168 HWSKDKGDYIKFVLYKENRDSMQVITTLSKLLRVKCSVFQYAGTKDKRAITSQLVTAYRV 227
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGV--VVDSEDVI-----K 135
S+LA++N I++G+ Y K L LG GN FTI LR V VD E I
Sbjct: 228 LPSRLASINGANTNIKVGNIEYCKTPLKLGDTKGNHFTIILRDVKVPVDREGEIGHHHVN 287
Query: 136 ASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKA 195
+ SL GFINYFG+QRFG+ ++PTH +G LL EWK AV +IL PREGE +
Sbjct: 288 SLLLSLKDKGFINYFGMQRFGTSTIPTHAIGKALLHSEWKEAVDLILKPREGESEDFQVV 347
Query: 196 REYYKETDDIDGTLRKLPRHL--VAERAILQCLKK-CPGNYLQALKAIPRTLRMMYVHSY 252
REYY+ T DI+ TL+ P H E +L+ ++K N L AL +PR R+MYVHSY
Sbjct: 348 REYYRSTSDINETLKLFPPHKRNSTEYQLLRGMEKHGTTNLLAALSFLPRNARLMYVHSY 407
Query: 253 QSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLD 312
QS++WN S R +++G LV GD + E+ N
Sbjct: 408 QSYVWNQMVSFRFREYG--------LVPVPGDLA----------LQSETVNGV------- 442
Query: 313 EVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKD 372
+ + N +YTI DVVLPLPG V YP N+V E YH + D
Sbjct: 443 -----------------LAITEENCHQYTIFDVVLPLPGYSVQYPTNNVGEQYHRILAND 485
Query: 373 GINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLD 425
+ + + H VK+F ++ G+YR + KP + EW+LL Y D PL ++DLD
Sbjct: 486 NLTVDKLKHRVKDF---ALPGSYRHIMAKPDNLEWKLLCYDDVTVPLHQSDLD 535
Score = 46.6 bits (109), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 28/41 (68%)
Query: 492 SQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
+ G + ALKL +LPSS YATMA+RE++K TS K LN
Sbjct: 546 TSGAKRALKLSFSLPSSTYATMALREVMKDDTSCFVQKKLN 586
>gi|149240171|ref|XP_001525961.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146450084|gb|EDK44340.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 824
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 194/520 (37%), Positives = 270/520 (51%), Gaps = 76/520 (14%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
+L F LYK N+DT + + ISK++ +S FAGTKD+R V+ QRV++ + + ++ AL
Sbjct: 350 YLHFTLYKTNRDTMDVIHNISKLIRTPNKSISFAGTKDRRGVTCQRVSIHRGKVLRVNAL 409
Query: 91 NK-RLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVV----------VDSEDVIKASAN 139
N R +LG F Y E L LG L GN FTITLR V VD ++I S
Sbjct: 410 NNMRKSNFKLGAFAYEDEPLKLGDLKGNEFTITLRDVKLSGAHEQSGEVDIREIINQSFA 469
Query: 140 SLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYY 199
SL GFINYFGLQRFGS SV TH G LL +W V+++L +E + ++ R +
Sbjct: 470 SLKEKGFINYFGLQRFGSFSVATHKFGIALLHEDWGKFVELLLSEQEIQAPGTAEMRRIW 529
Query: 200 KETDDIDGTLRKLPRHLVAERAILQCLKK---------CPGNYLQALKAIPRTLRMMYVH 250
KET D TL+KL +H VAE ++L+ L K P +YL + +IP+ LRMMYVH
Sbjct: 530 KETRDPKQTLKKLQQHYVAENSVLKVLAKEPQREDKSFSPHSYLMGIMSIPKNLRMMYVH 589
Query: 251 SYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSH 310
+YQS++WN AS R++ G E V GDLV D + LG + E E D
Sbjct: 590 AYQSYIWNIVASKRLELFGLE-VQEGDLVLESEDAEDVILGDDLEDKEDEMDEDV----- 643
Query: 311 LDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMN-DVAEVYHHLA 369
V T P VK VT DI + KYTI DVVLP PG +V P N + +VY
Sbjct: 644 ---VKLTKSP------VKIVTKEDIENKKYTIYDVVLPSPGFKVQLPENAKLKQVYIDEM 694
Query: 370 EKDGINLTESLHNVKEFSIT-SMTGNYRRVFQKPMDFEWELLTYIDG----NKPLAETDL 424
KDG++ +N++ +I S+TG YR + KPMD ++L++Y DG +PL +TDL
Sbjct: 695 AKDGLD----PYNLRRKNIVFSLTGAYRHLVTKPMDASYDLISYKDGLDGEARPLVKTDL 750
Query: 425 DKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHV 484
+ + + K + E G + + S + E + V H+
Sbjct: 751 EILEEKKQYTL----EGKSGEEGSNISRYFETKE------------------ESVDDAHL 788
Query: 485 ESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTS 524
E ++A+ L + L S YATMA+RE +K TS
Sbjct: 789 ED---------KLAVVLRMQLGVSSYATMALREFMKIDTS 819
>gi|392568847|gb|EIW62021.1| tRNA pseudouridine synthase D [Trametes versicolor FP-101664 SS1]
Length = 805
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 159/435 (36%), Positives = 236/435 (54%), Gaps = 52/435 (11%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFK--------- 81
++ F L K N+DTQ+AL +S+ L + AGTKDKR V+ QRV++ +
Sbjct: 315 YIHFTLQKTNRDTQDALAALSRTLHCNVKDLSVAGTKDKRGVTVQRVSLRRGNKTVEDVW 374
Query: 82 --------QRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDV 133
+R ++ + G+R+ DF Y K L LG L GN F ITLR V VDS +
Sbjct: 375 KMANGQNGKRTTEEILSQRGERGVRVADFNYRKASLELGMLKGNAFVITLRTVRVDSMET 434
Query: 134 IKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEIS 193
+ + N++ GFINY+G+QRFG+ S+PTH +G LL+G+W AV +IL R GE ++
Sbjct: 435 LDRAMNTIKNKGFINYYGMQRFGTASIPTHSIGLALLKGDWHRAVSLILRNRPGEHPDVV 494
Query: 194 KAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPG---NYLQALKAIPRTLRMMYVH 250
AR + D+D + +PR +VAER IL+ +K G N + +L IPR LR+MYVH
Sbjct: 495 AARNAWLVEGDLDKAIELMPRRVVAERCILESYRKQDGDTRNAMGSLSTIPRNLRLMYVH 554
Query: 251 SYQSFLWNHAASARVQKHGTEHVVVGDLVF----CKGDDTEK----ELGCVNPEFEYE-- 300
+YQS++WN S R++ HG + VVGDLVF K +D E L V + E
Sbjct: 555 AYQSYVWNAIVSERIRMHGADKPVVGDLVFDETTAKVEDAEDVAEIALDGVEGDVPLEDK 614
Query: 301 -SSNDADDSSHLDEVPETDHPDGRHNL-------VKTVTAADINSGKYTIDDVVLPLPGS 352
++ DAD ++ GR + VK + AD++ KY+I DV++PLPG
Sbjct: 615 AANEDADGAAGR---------SGRRSRKAWEPPKVKVLAEADLD--KYSIFDVIMPLPGK 663
Query: 353 RVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTY 412
V YP + E Y KDG++ + K++ S+ G+YR++ P + W + Y
Sbjct: 664 DVDYPGGRLGERYREFLRKDGLDPDNWVRKQKDY---SLGGSYRKILHLPKELSWTAMRY 720
Query: 413 IDGNKPLAETDLDKI 427
D + PLA++D DK+
Sbjct: 721 TDPDVPLAQSDEDKL 735
>gi|156846605|ref|XP_001646189.1| hypothetical protein Kpol_1013p2 [Vanderwaltozyma polyspora DSM
70294]
gi|156116863|gb|EDO18331.1| hypothetical protein Kpol_1013p2 [Vanderwaltozyma polyspora DSM
70294]
Length = 683
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 186/545 (34%), Positives = 276/545 (50%), Gaps = 84/545 (15%)
Query: 1 MGRNSKKRKER----GDNPFDSRGSENWPEQLGK-FLRFHLYKENKDTQEALGLISKMLG 55
+ RN+KK + + D+ G ENW K F+ F L+KENKDT +A+ +I K+L
Sbjct: 191 IARNNKKSRVNKQLLAEQTKDANGIENWGYGPAKEFIHFTLHKENKDTMQAVNIICKLLR 250
Query: 56 ILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLL 115
+ R +AGTKD+R V+ QR+++ +L ALN+ L G+ +G + + + L LG L
Sbjct: 251 MPTRIIRYAGTKDRRGVTAQRLSITNISIDRLNALNRTLKGMIIGGYKFDDKSLNLGDLN 310
Query: 116 GNRFTITLRGVVVDSED------VIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATL 169
GN FTIT+R V + + ++++S SL NGFINYFG+QRFG+ S+ TH +G L
Sbjct: 311 GNEFTITVRDVDLKDSNGIPLSKILESSCESLKTNGFINYFGMQRFGTFSISTHEIGKEL 370
Query: 170 LRGEWKSAVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCL--- 226
L WK A +IL + + +AR+Y++ET D +GTL+ +PR +AE AIL L
Sbjct: 371 LLENWKKAANLILSDQTNVLPKSKEARKYWEETKDAEGTLKLMPRDCMAENAILYALSSQ 430
Query: 227 KKCPGN------YLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVF 280
KK N Y A+ IPR LR MYVH+YQSF+WN AS R++ G + V GDLV
Sbjct: 431 KKEEDNDYSDNAYYLAIMKIPRNLRTMYVHAYQSFIWNSVASKRIELFGLKP-VEGDLVI 489
Query: 281 CKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKY 340
E +L +++ E + R +T +I++ K+
Sbjct: 490 DGSSRAESKLEDEE-------------VDFDEDLCEAQYIRAR-----PITKEEISANKF 531
Query: 341 TIDDVVLPLPGSRVIYPMN-DVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVF 399
+ DVVLP PG V+YP N +++ +Y L KDG+N E V++F S+ G+YR V
Sbjct: 532 KMTDVVLPTPGFDVVYPQNEELSRIYVDLMAKDGMNPNEMKRRVRDF---SLAGSYRNVV 588
Query: 400 QKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSES 459
Q P E++++ Y D + L TDL E + + KD
Sbjct: 589 QVPEGLEYKIVKYSDATQQLVNTDL---------------EMLNSKRAKD---------- 623
Query: 460 LSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELL 519
N K+ + +V + G + A+ + L S YATMA+REL+
Sbjct: 624 -----------NGQKYMKDKLERYV-----PEKSGDKTAVIIKFKLGVSAYATMALRELM 667
Query: 520 KTSTS 524
K TS
Sbjct: 668 KLETS 672
>gi|296488547|tpg|DAA30660.1| TPA: pseudouridylate synthase 7 homolog [Bos taurus]
Length = 659
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 147/407 (36%), Positives = 223/407 (54%), Gaps = 51/407 (12%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+WP+ G + F LYKENKDT +A+ L+SK L + P F + GTKDKR+++ Q + V K
Sbjct: 247 SWPKSRGSYCHFVLYKENKDTMDAINLLSKYLRVKPNIFSYMGTKDKRAITVQEIAVLKI 306
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
A +LA LNK L+ +LG+F Y K L LG+L GN FT+ LR + +++ ++ + NSL
Sbjct: 307 TAQRLAHLNKCLMNFKLGNFSYQKNPLKLGELQGNHFTVVLRN-ITGTDNQVEQAMNSLK 365
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKE 201
GFINY+G+QRFG+ +VPT+ VG +L+ W + +IL PR G E+ + K RE + +
Sbjct: 366 EIGFINYYGMQRFGTTAVPTYQVGRAILQNSWAEVMDLILKPRSGAEKGYLVKCREEWAK 425
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKKCP-GNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
T D LRKLP E +L+ L K N + A IPR R+MY+HSYQS++WN+
Sbjct: 426 TKDPAAALRKLPVKRCVEGQLLRGLSKYGMKNIVSAFGIIPRNNRLMYIHSYQSYVWNNM 485
Query: 261 ASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHP 320
S R+ ++G + V GDLV T
Sbjct: 486 VSKRIDEYGLKP-VPGDLVLKGATAT---------------------------------- 510
Query: 321 DGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESL 380
+ D+N+ Y+I DVV+PLPG VIYP + ++E Y + D +++
Sbjct: 511 --------FIEEDDVNN--YSIHDVVMPLPGFDVIYPKHKISEAYREMLTADNLDIDNMR 560
Query: 381 HNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKI 427
H ++++ S++G YR++ +P + WE++ Y D PL TD+D +
Sbjct: 561 HKIRDY---SLSGAYRKIIIRPQNVSWEVVAYDDPKIPLFNTDVDNL 604
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 28/41 (68%)
Query: 492 SQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
S+GK ALK+ +LP S YATMAIRE+LK TS+ LN
Sbjct: 614 SEGKYRALKMDFSLPPSTYATMAIREVLKMDTSIKNQTQLN 654
>gi|440901326|gb|ELR52299.1| Pseudouridylate synthase 7-like protein [Bos grunniens mutus]
Length = 711
Score = 271 bits (694), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 147/407 (36%), Positives = 223/407 (54%), Gaps = 51/407 (12%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+WP+ G + F LYKENKDT +A+ L+SK L + P F + GTKDKR+++ Q + V K
Sbjct: 299 SWPKSRGSYCHFVLYKENKDTMDAINLLSKYLRVKPNIFSYMGTKDKRAITVQEIAVLKI 358
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
A +LA LNK L+ +LG+F Y K L LG+L GN FT+ LR + +++ ++ + NSL
Sbjct: 359 TAQRLAHLNKCLMNFKLGNFSYQKNPLKLGELQGNHFTVVLRN-ITGTDNQVEQAMNSLK 417
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKE 201
GFINY+G+QRFG+ +VPT+ VG +L+ W + +IL PR G E+ + K RE + +
Sbjct: 418 EIGFINYYGMQRFGTTAVPTYQVGRAILQNSWAEVMDLILKPRSGAEKGYLVKCREEWAK 477
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKKCP-GNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
T D LRKLP E +L+ L K N + A IPR R+MY+HSYQS++WN+
Sbjct: 478 TKDPAAALRKLPVKRCVEGQLLRGLSKYGMKNIVSAFGIIPRNNRLMYIHSYQSYVWNNM 537
Query: 261 ASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHP 320
S R+ ++G + V GDLV T
Sbjct: 538 VSKRIDEYGLKP-VPGDLVLKGATAT---------------------------------- 562
Query: 321 DGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESL 380
+ D+N+ Y+I DVV+PLPG VIYP + ++E Y + D +++
Sbjct: 563 --------FIEEDDVNN--YSIHDVVMPLPGFDVIYPKHKISEAYREMLTADSLDIDNMR 612
Query: 381 HNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKI 427
H ++++ S++G YR++ +P + WE++ Y D PL TD+D +
Sbjct: 613 HKIRDY---SLSGAYRKIIIRPQNVSWEVVAYDDPKIPLFNTDVDNL 656
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 28/41 (68%)
Query: 492 SQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
S+GK ALK+ +LP S YATMAIRE+LK TS+ LN
Sbjct: 666 SEGKYRALKMDFSLPPSTYATMAIREVLKMDTSIKNQTQLN 706
>gi|406608066|emb|CCH40500.1| hypothetical protein BN7_33 [Wickerhamomyces ciferrii]
Length = 684
Score = 271 bits (693), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 188/526 (35%), Positives = 269/526 (51%), Gaps = 86/526 (16%)
Query: 17 DSRGSENW---PEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVS 73
D G EN+ P L +FL F L+KENKDT EA L++K L + P+ +AGTKD+R V+
Sbjct: 217 DENGVENYGLGP--LKEFLHFKLFKENKDTMEAANLLAKFLRLPPKQIRYAGTKDRRGVT 274
Query: 74 TQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVV-VDS-- 130
Q+V + K R ++ ALN+ L G++LG F Y +GL LG L GN F ITLR V +DS
Sbjct: 275 VQKVCIPKMRVERVNALNRTLRGLKLGSFSYEDKGLNLGDLHGNEFLITLRDVQGLDSTQ 334
Query: 131 --EDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGE 188
ED+ S SL GFINY+G+QRFG+ SV TH +G +L G WK+ V +IL +E
Sbjct: 335 SIEDIAAKSFTSLKEKGFINYYGMQRFGTFSVSTHTIGKEILLGNWKNVVDLILSDQEFA 394
Query: 189 RNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCL----KKCPGN-----YLQALKA 239
E +R+ + ET D +PR VAE IL+ L K G+ Y A+
Sbjct: 395 LPESRASRKIWSETRDAVKAQDNMPRKCVAESTILRFLSNEKKGEDGDYREHSYFHAIMK 454
Query: 240 IPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEY 299
IPR LR+MY H+YQS++WN AS R +KHG + V+ GDLV + +
Sbjct: 455 IPRNLRIMYGHAYQSYIWNTIASLRNEKHGLK-VLPGDLVLVESE--------------- 498
Query: 300 ESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYP-M 358
E S++ ++ + E D G+ + VT + SGK++I D+VLP PG + YP +
Sbjct: 499 EGSSNENEDQDDVDDFEEDVKSGKFKRARHVTEEEAQSGKFSIYDIVLPTPGFDINYPNI 558
Query: 359 NDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKP 418
D+ E Y + KDG++ + VKEF S G+YR + K E+ + Y + +
Sbjct: 559 PDIKEAYKTIMSKDGLDPEDMTRKVKEF---SFAGSYRNIIGKVKGLEYHVRHYEEPTQQ 615
Query: 419 LAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKE 478
L TDL+ L+++ +EE +KDI
Sbjct: 616 LIYTDLE------LLHLKAKEE--------------------NKDI-------------- 635
Query: 479 VKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTS 524
E + + G + A+ L L S YATMA+RE++K TS
Sbjct: 636 ------EQII-PEKGGSKTAIILKFQLDVSAYATMALREVMKADTS 674
>gi|196004370|ref|XP_002112052.1| hypothetical protein TRIADDRAFT_23629 [Trichoplax adhaerens]
gi|190585951|gb|EDV26019.1| hypothetical protein TRIADDRAFT_23629 [Trichoplax adhaerens]
Length = 629
Score = 271 bits (693), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 171/509 (33%), Positives = 247/509 (48%), Gaps = 108/509 (21%)
Query: 24 WPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQR 83
WP + K+ +F LYKEN DT A+ LI K G+ P FG+AGTKD+R+++TQ +T FK
Sbjct: 213 WPNEHDKYCKFRLYKENIDTMNAINLICKFTGLKPSIFGYAGTKDRRAITTQEITAFKVL 272
Query: 84 ASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGR 143
SKL +N +RLG+F Y K+ L LG L GN FT+TLR V SE+ I+ S SL
Sbjct: 273 PSKLHHVNSVTHKVRLGNFTYSKDRLTLGDLAGNHFTLTLRN-VKGSEEQIEKSMASLKE 331
Query: 144 NGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETD 203
GFINY+GLQRFG+ +PT+ +G LL G W+ ++++IL P + +ARE++ +
Sbjct: 332 TGFINYYGLQRFGTSHIPTYQIGKALLLGNWRKSIELILKPTRTDSFRTMEAREHWWQHR 391
Query: 204 DIDGTLRKLPRHLVAERAILQCL-KKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAAS 262
D LR L E +L+ L + + + A+ IPR R++YV+SYQS +WN AS
Sbjct: 392 DPSAALRLLRSRRGIEYYLLKGLVEHGSTSPVTAIMKIPRNARLLYVYSYQSLIWNLVAS 451
Query: 263 ARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDG 322
R+++ G + VVGDLV +S+ ++P
Sbjct: 452 RRIKEFGLK-PVVGDLVIS-------------------------NSARQQDLPH------ 479
Query: 323 RHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHN 382
Y+I D+VLPLPG V+YP ++ + YH + DGI++ +
Sbjct: 480 -----------------YSIHDIVLPLPGYNVMYPQHEANDWYHQQMKADGISIKNLENR 522
Query: 383 VKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAV 442
KEFS+ M YR++ +P + W Y D PL TDLD+I + K++
Sbjct: 523 HKEFSLCGM---YRKLVVRPKNLSWSTARYDDFTIPLYSTDLDQIRQNKII--------- 570
Query: 443 CGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLG 502
NN A K +AL L
Sbjct: 571 ---------------------------NNSVADGK------------------NLALLLS 585
Query: 503 LTLPSSCYATMAIRELLKTSTSVAFHKTL 531
+LP S YATMA+RE+++ TS K L
Sbjct: 586 FSLPPSSYATMALREVMRYDTSWYQQKKL 614
>gi|238883881|gb|EEQ47519.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 758
Score = 271 bits (692), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 183/537 (34%), Positives = 272/537 (50%), Gaps = 107/537 (19%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
+L F +YK+N+DT E I K+L I + +AGTKD+R + QR ++ + ++ AL
Sbjct: 278 YLHFTVYKQNRDTMEVANNIGKLLRINHKFINYAGTKDRRGATCQRFSINHGKVLRVNAL 337
Query: 91 NK-RLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGV-----------------VVDSED 132
NK + G LG F Y L LG L GN FTI +R + E
Sbjct: 338 NKSKRNGFTLGSFSYEDHPLKLGDLKGNEFTIVIRDIKPHHQQQQQQEQQPQDQSQSIES 397
Query: 133 VIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEI 192
++ + SL +NGFINYFG+QRFGS S+ TH G +L W+ V+++L +E
Sbjct: 398 IVTSCFESLQKNGFINYFGMQRFGSFSISTHEFGKFILNENWQEFVELLLSDQESVAPGS 457
Query: 193 SKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKK-------------CPGNYLQALKA 239
+AR+ +K+T D TL KLP + VAE A+L+ L+ +YL+A++A
Sbjct: 458 IEARKIWKQTRDPKLTLNKLPHYFVAETAVLRVLQNESPQQKDDNNTVYSSNSYLKAIQA 517
Query: 240 IPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEY 299
IP+ LRMMY H+YQ+++WN AS R++ +G +++ GDLVF E NP+
Sbjct: 518 IPKNLRMMYGHAYQAYIWNLVASKRIELYGL-NLIEGDLVF--------EDPITNPDIAD 568
Query: 300 ESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMN 359
E D +L+E VK++T DI SGKYTI DV+LP PG ++ YP N
Sbjct: 569 E------DVVYLNEAK-----------VKSLTKQDIESGKYTIFDVILPSPGYKIEYPTN 611
Query: 360 DV-AEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYI----- 413
+ +VY + EKDG+N + + KEF S+TG YR++ K + +EL+ Y
Sbjct: 612 PILKQVYIDIMEKDGLNPYKMIRKQKEF---SLTGTYRKLMAKANNLSFELIKYKTEKGE 668
Query: 414 -----DGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLST 468
DG KPL TDL+ L+N+ KE+E K S++ I+L
Sbjct: 669 DGETGDGEKPLIRTDLE------LLNLKKEQEKKSSQK------------SVTTPIELP- 709
Query: 469 ENNEAACAKEVKQPHVESVCGADSQ-GKQMALKLGLTLPSSCYATMAIRELLKTSTS 524
+ + D + G ++A+ L + L S YATMA+RE ++ TS
Sbjct: 710 ----------------DRIINDDKEGGNKLAVVLRMQLGVSSYATMALREFMRIDTS 750
>gi|242778705|ref|XP_002479293.1| pseudouridine synthase TruD/Pus7, putative [Talaromyces stipitatus
ATCC 10500]
gi|218722912|gb|EED22330.1| pseudouridine synthase TruD/Pus7, putative [Talaromyces stipitatus
ATCC 10500]
Length = 731
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 179/557 (32%), Positives = 278/557 (49%), Gaps = 95/557 (17%)
Query: 4 NSKKRKERG--DNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSF 61
N K+ RG P W E+ G++L F +YKENKDT E + +++ L + P+ F
Sbjct: 217 NRHKKSARGFRGEPTQKPARSGWEERGGQYLHFTIYKENKDTMEVISFLARNLKMHPKGF 276
Query: 62 GFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTI 121
FAGTKD+R V+ QR VFK A +LA LNK L +GDF Y G+ LG L GN F I
Sbjct: 277 QFAGTKDRRGVTVQRACVFKVVAERLAGLNKILRNAAVGDFEYNTHGMDLGDLEGNEFVI 336
Query: 122 TLRGV-------------VVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGAT 168
TLR V ++++++ + +L G++NY+G+QRFG+ ++ TH VG
Sbjct: 337 TLRDCQFLDSAGQASKVSVSEAKELVGKAMFNLRERGYLNYYGMQRFGTFAIGTHEVGLK 396
Query: 169 LLRGEWKSAVKMIL--------------DPREG-----ERNEISKAREYYKETDDIDGTL 209
+LRG++K AV +L + +EG + ++A Y+ T++++ L
Sbjct: 397 MLRGDFKGAVDALLHFSPQTLSAAQNTDNDQEGPLISSDDKARAEAIHIYRTTNNVNNAL 456
Query: 210 RKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHG 269
KLPR AE +I++ L + +Y AL++IPR LR+MYVH+YQSF+WN AA R + +G
Sbjct: 457 EKLPRKFSAETSIIRFLGRGNNDYFGALQSIPRNLRLMYVHAYQSFVWNIAAGERWRLYG 516
Query: 270 TEHVVVGDLVFC---KGDDTEKELGCVNPEFEYESSNDADDSSH-LDEVPETDHPDGRHN 325
+ VV GDL+ + T + G ++ + E A D ++ LD+V P
Sbjct: 517 -DKVVEGDLIISNQERWQGTAAQDGVIDADGEVIVEAQAQDRANALDDVFIRARP----- 570
Query: 326 LVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKE 385
++A + SGKYTI DVVLPLPG V+YP N + + Y + + + ++
Sbjct: 571 ----LSAEEAASGKYTIFDVVLPLPGYDVVYPANQLTDFYKNFMASERGGGLDPFDMRRK 626
Query: 386 FSITSMTGNYRRVFQKPMD-FEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCG 444
+ S++G+YR++ +P + + + Y ++ TDLD++
Sbjct: 627 WRDVSLSGSYRKILSRPGPVYSYNVKAYFQDDEQFVSTDLDRLK---------------- 670
Query: 445 NKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLT 504
D K E+N A DS K++A+ L
Sbjct: 671 ----------------GLDTKKKDEDNAEAI--------------DDSTDKKIAVVLKFQ 700
Query: 505 LPSSCYATMAIRELLKT 521
L SS YATMA+REL+K+
Sbjct: 701 LGSSQYATMALRELMKS 717
>gi|116004101|ref|NP_001070407.1| pseudouridylate synthase 7 homolog [Bos taurus]
gi|122132274|sp|Q08DI8.1|PUS7_BOVIN RecName: Full=Pseudouridylate synthase 7 homolog
gi|115304897|gb|AAI23724.1| Pseudouridylate synthase 7 homolog (S. cerevisiae) [Bos taurus]
Length = 659
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 146/407 (35%), Positives = 223/407 (54%), Gaps = 51/407 (12%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+WP+ G + F LYKENKDT +A+ L+SK L + P F + GTKDKR+++ Q + V K
Sbjct: 247 SWPKSRGSYCHFVLYKENKDTMDAINLLSKYLRVKPNIFSYMGTKDKRAITVQEIAVLKI 306
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
A +LA LNK L+ +LG+F Y K L LG+L GN FT+ LR + +++ ++ + NSL
Sbjct: 307 TAQRLAHLNKCLMNFKLGNFSYQKNPLKLGELQGNHFTVVLRN-ITGTDNQVEQAMNSLK 365
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKE 201
GFINY+G+QRFG+ +VPT+ VG +L+ W + +IL PR G E+ + K RE + +
Sbjct: 366 EIGFINYYGMQRFGTTAVPTYQVGRAILQNSWAEVMDLILKPRSGAEKGYLVKCREEWAK 425
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKKCP-GNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
+ D LRKLP E +L+ L K N + A IPR R+MY+HSYQS++WN+
Sbjct: 426 SKDPAAALRKLPVKRCVEGQLLRGLSKYGMKNIVSAFGIIPRNNRLMYIHSYQSYVWNNM 485
Query: 261 ASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHP 320
S R+ ++G + V GDLV T
Sbjct: 486 VSKRIDEYGLKP-VPGDLVLKGATAT---------------------------------- 510
Query: 321 DGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESL 380
+ D+N+ Y+I DVV+PLPG VIYP + ++E Y + D +++
Sbjct: 511 --------FIEEDDVNN--YSIHDVVMPLPGFDVIYPKHKISEAYREMLTADNLDIDNMR 560
Query: 381 HNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKI 427
H ++++ S++G YR++ +P + WE++ Y D PL TD+D +
Sbjct: 561 HKIRDY---SLSGAYRKIIIRPQNVSWEVVAYDDPKIPLFNTDVDNL 604
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 28/41 (68%)
Query: 492 SQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
S+GK ALK+ +LP S YATMAIRE+LK TS+ LN
Sbjct: 614 SEGKYRALKMDFSLPPSTYATMAIREVLKMDTSIKNQTQLN 654
>gi|449480917|ref|XP_002188832.2| PREDICTED: pseudouridylate synthase 7 homolog [Taeniopygia guttata]
Length = 652
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 146/410 (35%), Positives = 222/410 (54%), Gaps = 57/410 (13%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+WP+ G + F LYKENKDT +A+ ++SK L + P F + GTKDKR+++ Q + V +
Sbjct: 240 SWPKSRGSYCHFVLYKENKDTMDAINVLSKFLRVKPNIFSYMGTKDKRAITVQEIAVLRI 299
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
A +LA LNK L+ +LG+F Y L LG+L GN FT+ LR + +++ I+ + +SL
Sbjct: 300 TAQRLAHLNKCLMNFKLGNFSYKNHPLKLGELQGNHFTVVLRN-ITGTDEQIEQAMHSLR 358
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKE 201
GFINY+G+QRFG+ +VPT+ +G +L+ W + +IL PR G E+ + K RE + +
Sbjct: 359 EIGFINYYGMQRFGTTAVPTYQIGRAILQNNWNEVMDLILKPRPGAEKGYLVKCREEWAK 418
Query: 202 TDDIDGTLRKLPRHLVAERAILQ-CLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
T D L+KLP E +L+ LK N + A IPR R+MY+HSYQS++WN+
Sbjct: 419 TKDPAAALKKLPVKRCVEGQLLRGLLKYGMKNIISAFGIIPRNNRLMYIHSYQSYVWNNM 478
Query: 261 ASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHP 320
S R++++G V GDL+
Sbjct: 479 VSKRIEEYGL-RAVPGDLI----------------------------------------- 496
Query: 321 DGRHNLVKTVTAADINSG---KYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLT 377
+K TA I G YTI DVV+PLPG VIYP + + E Y + D +++
Sbjct: 497 ------LKGATAVHIEEGDIDNYTIHDVVMPLPGFDVIYPKHKIGEAYKEMLVADNLDIN 550
Query: 378 ESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKI 427
H ++++ S++G YR++ +P + WE++ Y D PL TDLDK+
Sbjct: 551 NMRHKIRDY---SLSGAYRKIIIRPQNVNWEVVAYDDPKIPLFTTDLDKL 597
Score = 45.4 bits (106), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 492 SQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
+ GK ALK+ +LP S YATMAIRE+LK TS+ LN
Sbjct: 607 TDGKFRALKMEFSLPPSTYATMAIREVLKMDTSIKNQTQLN 647
>gi|255713820|ref|XP_002553192.1| KLTH0D11110p [Lachancea thermotolerans]
gi|238934572|emb|CAR22754.1| KLTH0D11110p [Lachancea thermotolerans CBS 6340]
Length = 688
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 177/522 (33%), Positives = 262/522 (50%), Gaps = 69/522 (13%)
Query: 17 DSRGSENWPEQLGK-FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQ 75
D+ G ENW K F+ F +YKENKDT + ++SK L R FAGTKD+R+++ Q
Sbjct: 206 DANGVENWGYGPSKSFIHFTMYKENKDTMDVANVLSKFLKTPTRLIRFAGTKDRRAITCQ 265
Query: 76 RVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGV------VVD 129
R+++ K +L ALN+ L G+ LG F + E L LG L GN FTI +R V V
Sbjct: 266 RMSISKINIDRLNALNRALKGVVLGGFKFEDESLSLGDLRGNEFTIAIRDVKVPEVSTVS 325
Query: 130 SEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGER 189
E ++ + NGFINYFG+QRFG+ SV TH VG LL +W+ A +IL +E
Sbjct: 326 LEQILADGCAFIKENGFINYFGMQRFGTFSVSTHEVGKCLLLEQWEKAANLILAEQENVL 385
Query: 190 NEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLK------KCPGNYLQALKAIPRT 243
+AR+ + ET D L+++PR VAE AIL L GNYL + IPR
Sbjct: 386 PISKEARKIWSETKDPAAALKRMPRQCVAENAILHSLADQARNGDSAGNYLHCINKIPRN 445
Query: 244 LRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSN 303
LR MY H+YQS++WN S R++ +G + VV GDLV + + G N + ++
Sbjct: 446 LRTMYGHAYQSYVWNTVTSKRIELYGLK-VVAGDLVIDESAQQGSKAG--NASGDADADE 502
Query: 304 DADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMND-VA 362
+ D + L E + + VT ++++GK++I+DVVLP PG V+YP N+ +
Sbjct: 503 EDDFAEDLRE--------AQFVRARPVTQEEVDAGKFSIEDVVLPSPGFDVVYPANESLR 554
Query: 363 EVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAET 422
++Y + KDG++ +++F S+ G+YR + KP D +++L Y + L T
Sbjct: 555 QIYVDVMNKDGLDPFNMRRKIRDF---SLAGSYRNIIHKPQDLSFKILHYSSPTQQLINT 611
Query: 423 DLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQP 482
DL+ + NK+ + + LS+
Sbjct: 612 DLE----------------ILNNKKGKENGQKYMKDKLSR-------------------- 635
Query: 483 HVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTS 524
D G+ A+ L L S YATM +REL+K TS
Sbjct: 636 -----FPEDKGGESTAVILSFKLGVSAYATMLLRELMKLETS 672
>gi|218189134|gb|EEC71561.1| hypothetical protein OsI_03917 [Oryza sativa Indica Group]
Length = 650
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 150/314 (47%), Positives = 195/314 (62%), Gaps = 26/314 (8%)
Query: 223 LQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCK 282
LQ LKK PGNYLQAL AIPRTLR+MYVHSYQS+LWNHAAS RVQK+G VV GDLV+
Sbjct: 358 LQRLKKYPGNYLQALMAIPRTLRLMYVHSYQSYLWNHAASMRVQKYGISRVVEGDLVY-- 415
Query: 283 GDDTEKELGCVNPEFEYESSNDADD-SSHLDEVPETDHPDGRHNLVKTVTAADINSGKYT 341
+KE + S +D SS ++ ET P+ VK + D++ YT
Sbjct: 416 ----KKEAPFEQGALKATSEDDGQTMSSEMNACCET-LPEEMIQSVKIADSEDLSKSLYT 470
Query: 342 IDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQK 401
+DVVLPLPGS ++P N+VA +YH +A KDGINL ES+H V++FSIT M G YRRV Q+
Sbjct: 471 FEDVVLPLPGSETLFPGNEVAGIYHEIAMKDGINLRESVHGVEDFSITRMKGGYRRVIQR 530
Query: 402 PMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNI---VKEEEAVCGNKEKDPSDCMKQSE 458
P+DFEW+L+TY D PL ETDLD ++K K + + + + + C + + + SE
Sbjct: 531 PIDFEWDLITYTDEKIPLVETDLDVLSKTKPLEVNELLSDGISSCTSHDSGLEASLDASE 590
Query: 459 SLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIREL 518
S+ N + E K G+ +++A+KL TLP+S YATMAIREL
Sbjct: 591 SI---------NGASLVVAEAKS------IGSSDMLEKLAIKLAFTLPASSYATMAIREL 635
Query: 519 LKTSTSVAFHKTLN 532
+KTSTSVA KTLN
Sbjct: 636 MKTSTSVAHQKTLN 649
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 111/155 (71%), Positives = 127/155 (81%), Gaps = 3/155 (1%)
Query: 2 GRNSKKRKERG---DNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILP 58
GRN K G D PFDSRGS WP+ LGKF+RFHLYKENKDTQEALG I KMLG+ P
Sbjct: 203 GRNRKGTGSSGWRDDKPFDSRGSIIWPDHLGKFIRFHLYKENKDTQEALGKIGKMLGLQP 262
Query: 59 RSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNR 118
RSF FAGTKDKR+V+TQ+VTVFK +AS+L ALN +LIGI++GDF YVKEGL LGQL+GNR
Sbjct: 263 RSFRFAGTKDKRAVTTQQVTVFKVQASRLVALNSKLIGIKVGDFSYVKEGLALGQLMGNR 322
Query: 119 FTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQ 153
FTITLR VV +SEDVIKA+ + L NGFINY+GLQ
Sbjct: 323 FTITLRSVVTESEDVIKAALDGLITNGFINYYGLQ 357
>gi|336386668|gb|EGO27814.1| hypothetical protein SERLADRAFT_354961 [Serpula lacrymans var.
lacrymans S7.9]
Length = 664
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 170/514 (33%), Positives = 255/514 (49%), Gaps = 73/514 (14%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
++ F L K N+DTQ+AL +S+ L + + AGTKDKR V+ QRV++ + + ++
Sbjct: 190 YIHFTLQKTNRDTQDALAHLSRTLRVNLKDLAVAGTKDKRGVTVQRVSLRRGNKTVEDSM 249
Query: 91 NKRLI-----GIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNG 145
L G+R+ D Y K L LG L GN F ITLR V VDS + + S + + G
Sbjct: 250 QDILTQRGERGVRIADLNYRKASLDLGMLKGNAFLITLRNVQVDSVETLDRSLSIMKYKG 309
Query: 146 FINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDDI 205
FINY+G+QRFG+ +VPTH +G L+ +W AV +IL R GE ++ ARE + D+
Sbjct: 310 FINYYGMQRFGTAAVPTHSIGLAFLKSDWHKAVALILQKRPGEHPDVVAAREAWLIDGDL 369
Query: 206 DGTLRKLPRHLVAERAILQCLKKCPG---NYLQALKAIPRTLRMMYVHSYQSFLWNHAAS 262
+ L +PR +VAER IL+ +K G N + AL IPR LR+MY+H+YQS++WN S
Sbjct: 370 ERALDLMPRRVVAERCILESYQKQKGETRNAMGALSTIPRNLRLMYIHAYQSYVWNAIVS 429
Query: 263 ARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDG 322
R+++HG++ V GDLVF K D K + + + D L+E T
Sbjct: 430 ERIRRHGSDKPVPGDLVFEK-DTNSKVGDGGDMDVDGPDGEPGTDEKPLEEAENTVTRSR 488
Query: 323 RHNL----VKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTE 378
+ VKT+T D + +Y+I DV++PLPG V YP ++ E Y +DG++
Sbjct: 489 KKPWVAPRVKTLTEEDAD--QYSIFDVIMPLPGKDVAYPGGELGEQYREFLRRDGLDPDN 546
Query: 379 SLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKE 438
+ KE+ + G+YR++ P D W +L Y D + LA+ D DK+
Sbjct: 547 YVRKQKEY---ILGGSYRKILLLPKDVSWSVLRYTDPDVALAQADEDKLLGF-------- 595
Query: 439 EEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMA 498
DP ++ + ++ I L+ E
Sbjct: 596 ----------DPPVVVEDGKFMALQINLTLE----------------------------- 616
Query: 499 LKLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
++ YATMA+RE+ KT TS F L
Sbjct: 617 --------TAAYATMALREVTKTETSSHFQTGLT 642
>gi|222619332|gb|EEE55464.1| hypothetical protein OsJ_03628 [Oryza sativa Japonica Group]
Length = 650
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 150/314 (47%), Positives = 195/314 (62%), Gaps = 26/314 (8%)
Query: 223 LQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCK 282
LQ LKK PGNYLQAL AIPRTLR+MYVHSYQS+LWNHAAS RVQK+G VV GDLV+
Sbjct: 358 LQRLKKYPGNYLQALMAIPRTLRLMYVHSYQSYLWNHAASMRVQKYGISRVVEGDLVY-- 415
Query: 283 GDDTEKELGCVNPEFEYESSNDADD-SSHLDEVPETDHPDGRHNLVKTVTAADINSGKYT 341
+KE + S +D SS ++ ET P+ VK + D++ YT
Sbjct: 416 ----KKEAPFEQGALKATSEDDGQTMSSEMNACCET-LPEEMIQSVKIADSEDLSKSLYT 470
Query: 342 IDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQK 401
+DVVLPLPGS ++P N+VA +YH +A KDGINL ES+H V++FSIT M G YRRV Q+
Sbjct: 471 FEDVVLPLPGSETLFPGNEVAGIYHEIAMKDGINLRESVHGVEDFSITRMKGGYRRVIQR 530
Query: 402 PMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNI---VKEEEAVCGNKEKDPSDCMKQSE 458
P+DFEW+L+TY D PL ETDLD ++K K + + + + + C + + + SE
Sbjct: 531 PIDFEWDLITYTDEKIPLVETDLDVLSKTKPLEVNELLSDGISSCTSHDSGLEASLDASE 590
Query: 459 SLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIREL 518
S+ N + E K G+ +++A+KL TLP+S YATMAIREL
Sbjct: 591 SI---------NGASLVVAEAKS------IGSSDMLEKLAIKLAFTLPASSYATMAIREL 635
Query: 519 LKTSTSVAFHKTLN 532
+KTSTSVA KTLN
Sbjct: 636 MKTSTSVAHQKTLN 649
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 112/155 (72%), Positives = 128/155 (82%), Gaps = 3/155 (1%)
Query: 2 GRNSKKRKERG---DNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILP 58
GRN K G D PFDSRGS WP+ LGKF+RFHLYKENKDTQEALG I KMLG+ P
Sbjct: 203 GRNRKGTGSSGWRDDKPFDSRGSIIWPDHLGKFIRFHLYKENKDTQEALGKIGKMLGLQP 262
Query: 59 RSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNR 118
RSFGFAGTKDKR+V+TQ+VTVFK +AS+L ALN +LIGI++GDF YVKEGL LGQL+GNR
Sbjct: 263 RSFGFAGTKDKRAVTTQQVTVFKVQASRLVALNSKLIGIKVGDFSYVKEGLALGQLMGNR 322
Query: 119 FTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQ 153
FTITLR VV +SEDVIKA+ + L NGFINY+GLQ
Sbjct: 323 FTITLRSVVTESEDVIKAALDGLITNGFINYYGLQ 357
>gi|410908381|ref|XP_003967669.1| PREDICTED: pseudouridylate synthase 7 homolog [Takifugu rubripes]
Length = 667
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 168/511 (32%), Positives = 247/511 (48%), Gaps = 106/511 (20%)
Query: 24 WPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQR 83
WP+ F F LYKENKDT +A+ ++SK L + P F + GTKDKR+++ Q + V K
Sbjct: 256 WPKNRDTFCHFVLYKENKDTMDAINVLSKFLRLRPNMFSYMGTKDKRAITVQEIAVHKIT 315
Query: 84 ASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGR 143
A +L LNK LI +++G+FCY L LG L GN FT+ +R + ++ + + SL +
Sbjct: 316 AERLQHLNKCLINLKVGNFCYKNHPLKLGGLQGNHFTVVIRN-ISGTDAQVNQAMTSLRQ 374
Query: 144 NGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKET 202
GFINY+G+QRFG+ +VPT VG +L+ W V +IL PR G E+ + + RE + +T
Sbjct: 375 TGFINYYGMQRFGTTAVPTQHVGRAILKNNWSEVVDLILKPRPGAEKEFLVRCREEWAKT 434
Query: 203 DDIDGTLRKLPRHLVAERAILQCLKKC-PGNYLQALKAIPRTLRMMYVHSYQSFLWNHAA 261
D + L+KLP E +L+ L N + A IPR R+MYVHSYQS +WN
Sbjct: 435 QDPEAALKKLPNKRCVEGQLLRGLSMYGKKNIVTAFGLIPRNNRLMYVHSYQSVVWNTMV 494
Query: 262 SARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPD 321
S R+ G + V GDL+ KG ++H+ E ++
Sbjct: 495 SRRIDAFGLK-AVEGDLIL-KG-----------------------TTAHVLSAEEAEN-- 527
Query: 322 GRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLH 381
++I D+V+PLPG VIYP + V + Y L DG+++ + H
Sbjct: 528 ------------------HSIHDIVMPLPGYDVIYPSHHVGKGYRELLSADGLDIDKMRH 569
Query: 382 NVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEA 441
VK++ S+ G YRR+ +P D WE++ Y D L +D + I++ + A
Sbjct: 570 RVKDY---SLAGAYRRIVIRPTDVSWEVINYDDPRISLVHSDFE---------ILENKPA 617
Query: 442 VCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKL 501
NK+ GK AL++
Sbjct: 618 PVFNKD----------------------------------------------GKYRALRM 631
Query: 502 GLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
+LP S YATMAIRE+LK TS+ LN
Sbjct: 632 EFSLPPSTYATMAIREVLKLDTSIKKQTQLN 662
>gi|53793356|dbj|BAD52937.1| potential U2 snRNA pseudouridine synthase-like [Oryza sativa
Japonica Group]
gi|56785224|dbj|BAD82076.1| potential U2 snRNA pseudouridine synthase-like [Oryza sativa
Japonica Group]
Length = 629
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 150/314 (47%), Positives = 195/314 (62%), Gaps = 26/314 (8%)
Query: 223 LQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCK 282
LQ LKK PGNYLQAL AIPRTLR+MYVHSYQS+LWNHAAS RVQK+G VV GDLV+
Sbjct: 337 LQRLKKYPGNYLQALMAIPRTLRLMYVHSYQSYLWNHAASMRVQKYGISRVVEGDLVY-- 394
Query: 283 GDDTEKELGCVNPEFEYESSNDADD-SSHLDEVPETDHPDGRHNLVKTVTAADINSGKYT 341
+KE + S +D SS ++ ET P+ VK + D++ YT
Sbjct: 395 ----KKEAPFEQGALKATSEDDGQTMSSEMNACCET-LPEEMIQSVKIADSEDLSKSLYT 449
Query: 342 IDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQK 401
+DVVLPLPGS ++P N+VA +YH +A KDGINL ES+H V++FSIT M G YRRV Q+
Sbjct: 450 FEDVVLPLPGSETLFPGNEVAGIYHEIAMKDGINLRESVHGVEDFSITRMKGGYRRVIQR 509
Query: 402 PMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNI---VKEEEAVCGNKEKDPSDCMKQSE 458
P+DFEW+L+TY D PL ETDLD ++K K + + + + + C + + + SE
Sbjct: 510 PIDFEWDLITYTDEKIPLVETDLDVLSKTKPLEVNELLSDGISSCTSHDSGLEASLDASE 569
Query: 459 SLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIREL 518
S+ N + E K G+ +++A+KL TLP+S YATMAIREL
Sbjct: 570 SI---------NGASLVVAEAKS------IGSSDMLEKLAIKLAFTLPASSYATMAIREL 614
Query: 519 LKTSTSVAFHKTLN 532
+KTSTSVA KTLN
Sbjct: 615 MKTSTSVAHQKTLN 628
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 94/155 (60%), Positives = 109/155 (70%), Gaps = 24/155 (15%)
Query: 2 GRNSKKRKERG---DNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILP 58
GRN K G D PFDSRGS WP+ LGKF+RFHLYKENKDTQEALG I KMLG+ P
Sbjct: 203 GRNRKGTGSSGWRDDKPFDSRGSIIWPDHLGKFIRFHLYKENKDTQEALGKIGKMLGLQP 262
Query: 59 RSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNR 118
RSFGFAGTKDKR+V+TQ+VTVFK +AS+L ALN +LIGI++GDF
Sbjct: 263 RSFGFAGTKDKRAVTTQQVTVFKVQASRLVALNSKLIGIKVGDF---------------- 306
Query: 119 FTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQ 153
R VV +SEDVIKA+ + L NGFINY+GLQ
Sbjct: 307 -----RSVVTESEDVIKAALDGLITNGFINYYGLQ 336
>gi|150865870|ref|XP_001385259.2| hypothetical protein PICST_46601 [Scheffersomyces stipitis CBS
6054]
gi|149387126|gb|ABN67230.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 680
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 177/508 (34%), Positives = 267/508 (52%), Gaps = 86/508 (16%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
+L F ++KEN++T E ISK L I ++ +AGTKD+R + QR ++ K + ++ +L
Sbjct: 232 YLHFTVFKENRETMEVASTISKFLRIPHKAINYAGTKDRRGATCQRFSIHKGKVVRVNSL 291
Query: 91 NKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVV----DSEDVIKASANSLGRNGF 146
NK L LG F Y L LG L GN+FTIT+R V + +++ S SL GF
Sbjct: 292 NKALKNTVLGGFTYEDSPLGLGDLKGNQFTITIRDVEPLGGENLAEIVDNSFTSLKEKGF 351
Query: 147 INYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDDID 206
INYFG+QRFGS S+ TH++G LL+ EWK A ++IL ++ + +AR + ET +
Sbjct: 352 INYFGMQRFGSFSISTHMLGIHLLKEEWKDAAELILSEQDIVAPDSIEARRIWAETKNPS 411
Query: 207 GTLRKLPRHLVAERAILQCL---------KKCPGNYLQALKAIPRTLRMMYVHSYQSFLW 257
TL+KLP + AE AIL+ L + +Y +++ AIP+ LRMMY H+YQS++W
Sbjct: 412 LTLKKLPHYFSAETAILKVLDTEQLDENEEYGKNSYFKSIMAIPKNLRMMYSHAYQSYVW 471
Query: 258 NHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPET 317
N AS R++ G E + GDLV ++ E + +S D D E
Sbjct: 472 NLVASKRIELFGLE-LQEGDLV-------------IDDEIKVKSDQDDD--------FEE 509
Query: 318 DHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMND-VAEVYHHLAEKDGINL 376
D R VK++T D+ SGKY+I DVVLP PG +V YP N+ +A+VY +DG++
Sbjct: 510 DVKVNRDVKVKSITKEDVESGKYSIYDVVLPTPGFKVQYPTNEKLAQVYVQTMAQDGLDP 569
Query: 377 TESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIV 436
+ +KEF S+TG+YR + +P + ++++ Y D + PL TDL+ I + K
Sbjct: 570 YKMGRRIKEF---SLTGSYRNLMTRPENLTYKIVKYSDNSVPLVRTDLE-ILRLK----- 620
Query: 437 KEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQ 496
K+ + + + IK+ E +EA +
Sbjct: 621 ------------------KEGKDVERIIKV--EGDEAT---------------------K 639
Query: 497 MALKLGLTLPSSCYATMAIRELLKTSTS 524
A+ L + L S YATMA+RE +K TS
Sbjct: 640 TAVVLTMQLGVSSYATMAMREFMKADTS 667
>gi|133778700|gb|AAI33872.1| Pus7 protein [Danio rerio]
Length = 395
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 173/494 (35%), Positives = 237/494 (47%), Gaps = 106/494 (21%)
Query: 41 KDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLG 100
KDT EA+ ++S+ L + P F + GTKDKR++S Q + V K A +L+ LNK L+ ++LG
Sbjct: 1 KDTMEAINILSRFLRVRPNMFSYMGTKDKRAISVQEIAVLKISAERLSHLNKCLMNLKLG 60
Query: 101 DFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSV 160
+FCY K L LG+L GN FT+ LR + S+ + + NSL GFINY+G+QRFG+ +V
Sbjct: 61 NFCYKKHPLKLGELQGNHFTVVLRN-ISGSQQQVDQAMNSLQNTGFINYYGMQRFGTTAV 119
Query: 161 PTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKETDDIDGTLRKLPRHLVAE 219
PTH VG +L+ WK V +IL PR G E+ + K RE + T D LRKLP E
Sbjct: 120 PTHRVGRAILQNNWKEVVDLILKPRPGAEKGYLVKCREEWARTQDPAAALRKLPVKRCVE 179
Query: 220 RAILQCLKK-CPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDL 278
+L+ L K N + A IPR R+MY+HSYQS++WN S RV +G V GDL
Sbjct: 180 GQLLRGLAKHGKHNIITAFALIPRNNRLMYIHSYQSYVWNSMVSRRVDAYGLR-AVEGDL 238
Query: 279 VFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSG 338
+ G S+H V +AD +
Sbjct: 239 ILRGG------------------------SAH-------------------VLSAD-EAQ 254
Query: 339 KYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRV 398
K++I DVV+PLPG VIYP + V + Y + D +++ H V+++ S+ G YRRV
Sbjct: 255 KHSIHDVVMPLPGFDVIYPTHSVGQGYREMLSADDLDIDNMRHKVRDY---SLAGAYRRV 311
Query: 399 FQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSE 458
+P D WEL+ Y D PL TDL+K+ E P+
Sbjct: 312 LIRPSDVSWELVQYDDPRVPLVHTDLEKL-------------------ENKPAPV----- 347
Query: 459 SLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIREL 518
TE A E P SS YATMA+RE+
Sbjct: 348 -------YLTEGKYCALKMEFSLP------------------------SSTYATMAVREV 376
Query: 519 LKTSTSVAFHKTLN 532
LK TS+ LN
Sbjct: 377 LKMDTSIKNQTQLN 390
>gi|3859671|emb|CAA22009.1| hypothetical protein [Candida albicans]
Length = 747
Score = 269 bits (688), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 182/537 (33%), Positives = 272/537 (50%), Gaps = 107/537 (19%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
+L F +YK+N+DT E I K+L I + +AGTKD+R + QR ++ + ++ AL
Sbjct: 267 YLHFTVYKQNRDTMEVANNIGKLLRINHKFINYAGTKDRRGATCQRFSINHGKVLRVNAL 326
Query: 91 NK-RLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGV-----------------VVDSED 132
NK + G LG F Y L LG L GN FTI +R + E
Sbjct: 327 NKSKRNGFTLGSFSYEDHPLKLGDLKGNEFTIVIRDIKPHHQQQQQQEQQPQDQSQSIES 386
Query: 133 VIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEI 192
++ + SL +NGFINYFG+QRFGS S+ TH G +L W+ V+++L +E
Sbjct: 387 IVTSCFESLQKNGFINYFGMQRFGSFSISTHEFGKFILNENWQEFVELLLSDQESVAPGS 446
Query: 193 SKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKK-------------CPGNYLQALKA 239
+AR+ +K+T D TL KLP + VAE A+L+ L+ +YL+A++A
Sbjct: 447 IEARKIWKQTRDPKLTLNKLPHYFVAETAVLRVLQNESPQQKDDNNTVYSSNSYLKAIQA 506
Query: 240 IPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEY 299
IP+ LRMMY H+YQ+++WN AS R++ +G +++ GDLVF E NP+
Sbjct: 507 IPKNLRMMYGHAYQAYIWNLVASKRIELYGL-NLIEGDLVF--------EDPITNPDIVD 557
Query: 300 ESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMN 359
E D +L+E V+++T DI SGKYTI DV+LP PG ++ YP N
Sbjct: 558 E------DVVYLNEAK-----------VRSLTKQDIESGKYTIFDVILPSPGYKIEYPTN 600
Query: 360 DV-AEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYI----- 413
+ +VY + EKDG+N + + KEF S+TG YR++ K + +EL+ Y
Sbjct: 601 PILKQVYIDIMEKDGLNPFKMIRKQKEF---SLTGTYRKLMAKANNLSFELIKYKTEEGE 657
Query: 414 -----DGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLST 468
DG KPL TDL+ L+N+ KE+E K S++ I+L
Sbjct: 658 DGETGDGEKPLIRTDLE------LLNLKKEQEKKSSQK------------SVTTPIELP- 698
Query: 469 ENNEAACAKEVKQPHVESVCGADSQ-GKQMALKLGLTLPSSCYATMAIRELLKTSTS 524
+ + D + G ++A+ L + L S YATMA+RE ++ TS
Sbjct: 699 ----------------DRIINDDKEGGNKLAVVLRMQLGVSSYATMALREFMRIDTS 739
>gi|302696431|ref|XP_003037894.1| hypothetical protein SCHCODRAFT_254964 [Schizophyllum commune H4-8]
gi|300111591|gb|EFJ02992.1| hypothetical protein SCHCODRAFT_254964 [Schizophyllum commune H4-8]
Length = 818
Score = 269 bits (688), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 178/521 (34%), Positives = 249/521 (47%), Gaps = 93/521 (17%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVT------------ 78
++ F L K N+DTQ+AL +S++L + AGTKDKR V+ QRV+
Sbjct: 322 YIHFTLQKTNRDTQDALAHLSRLLHCNVKDLSVAGTKDKRGVTVQRVSLKRNGKLVEDVW 381
Query: 79 -----VFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDV 133
V + + A + GIR+ D Y K L LG L GN F ITLR V VDS D
Sbjct: 382 KLANGVGRDKPESEAVKQRGERGIRVADLKYSKASLELGMLKGNAFVITLRNVQVDSMDT 441
Query: 134 IKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEIS 193
+ + + GFINY+G+QRFG+ SVPTH VG LLR EW+ AV +IL R GE +I+
Sbjct: 442 LDKAMTIVKEKGFINYYGMQRFGTASVPTHSVGLALLRSEWQRAVDLILQKRSGEHADIA 501
Query: 194 KAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPG--NYLQALKAIPRTLRMMYVHS 251
AR+ + D++ L+ LPR +VAER IL+ KK N L AL IP+ LR+MYVH+
Sbjct: 502 AARDAFLVDGDVEKALQMLPRRIVAERCILESYKKEKDTRNALGALTTIPKNLRLMYVHA 561
Query: 252 YQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHL 311
YQS++WN S R++ G + + GDLV D E E E+ + S
Sbjct: 562 YQSYVWNAIVSERIRTFGADKPIPGDLVL----DVPPEEPKKADAEEEEAPANGKRSRKP 617
Query: 312 DEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEK 371
P+ +K +T AD+++ Y+I DVV+PLPG+ V P + Y
Sbjct: 618 YVAPK----------IKVLTEADVDN--YSIFDVVMPLPGTDVSLPGGPLGARYREFLVA 665
Query: 372 DGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAK 431
DG++ KE+ + G+YR + KP + W L Y D + LA+ D DK+
Sbjct: 666 DGVDPDNFHRKQKEY---ILAGSYRHILHKPKELTWTTLRYTDPDVALAQADEDKL---- 718
Query: 432 LVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGAD 491
L D + EN
Sbjct: 719 ----------------------------LGMDPPVIDEN--------------------- 729
Query: 492 SQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
GK +AL++ L L ++CYATMA+RE+ KT TS + L
Sbjct: 730 --GKFLALQINLQLGTACYATMALREITKTDTSTHYQSNLT 768
>gi|432860662|ref|XP_004069549.1| PREDICTED: pseudouridylate synthase 7 homolog [Oryzias latipes]
Length = 702
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 168/511 (32%), Positives = 245/511 (47%), Gaps = 106/511 (20%)
Query: 24 WPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQR 83
WP+ G F F LYKENKDT +A+ ++SK L + P F + GTKDKR+++ Q + V +
Sbjct: 291 WPKNRGSFCHFVLYKENKDTMDAINVLSKFLRLRPNMFSYMGTKDKRAITVQEIAVLRIT 350
Query: 84 ASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGR 143
A +LA LNK L+ +++G+F Y L LG+L GN FT+ +R + E V +A SL +
Sbjct: 351 ADRLAHLNKCLLNLKVGNFSYKNHPLKLGELQGNHFTVIIRNISGTGEQVHQA-MTSLKQ 409
Query: 144 NGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKET 202
GFINY+G+QRFG+ +VPT VG +LR W V +IL PR G E+ + RE + +T
Sbjct: 410 TGFINYYGMQRFGTTAVPTQHVGRAILRNNWNQVVDLILKPRPGAEKEYLVHCREEWAKT 469
Query: 203 DDIDGTLRKLPRHLVAERAILQCLKKC-PGNYLQALKAIPRTLRMMYVHSYQSFLWNHAA 261
D + L+KLP E +L+ L N + A IPR R+MY+HSYQSF+WN
Sbjct: 470 QDPEAALKKLPNKRCLEGQLLRGLSMYGKKNIVTAFGLIPRNNRLMYIHSYQSFVWNTMV 529
Query: 262 SARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPD 321
S R+Q G + V GDLV +G ++H+ E +
Sbjct: 530 SRRIQAFGLK-AVAGDLVL-RG-----------------------TTAHVLSAEEAE--- 561
Query: 322 GRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLH 381
+++I D+V+PLPG VIYP + + + Y L DG+++ H
Sbjct: 562 -----------------QHSIHDIVMPLPGFDVIYPSHHIGDGYRELLSADGLDIDNMRH 604
Query: 382 NVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEA 441
V+++ S+ G YRR+ +P D W+++ Y D L TD +K+
Sbjct: 605 KVRDY---SLAGAYRRIIIRPTDVSWDVIQYDDPRISLVHTDFEKL-------------- 647
Query: 442 VCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKL 501
E P+ +TE A E
Sbjct: 648 -----ENKPAPV------------FNTEGKYRALRME----------------------- 667
Query: 502 GLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
+LP S YATMA+RE+LK TS+ LN
Sbjct: 668 -FSLPPSTYATMAVREVLKLDTSIKKQTQLN 697
>gi|449278825|gb|EMC86564.1| Pseudouridylate synthase 7 like protein, partial [Columba livia]
Length = 653
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 145/410 (35%), Positives = 221/410 (53%), Gaps = 57/410 (13%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+WP+ G + F LYKENKDT +A+ ++S+ L + P F + GTKDKR+++ Q + V +
Sbjct: 241 SWPKSRGSYCHFVLYKENKDTMDAINVLSRFLRVKPNIFSYMGTKDKRAITVQEIAVLRI 300
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
A +LA LNK L+ +LG+F Y L LG+L GN FT+ LR + ++D I+ + +SL
Sbjct: 301 TAQRLAHLNKCLMNFKLGNFSYKNHPLKLGELQGNHFTVVLRN-ITGTDDQIEQAMHSLR 359
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKE 201
GFINY+G+QRFG+ +VPT+ +G +L+ W + +IL PR G E+ + K RE + +
Sbjct: 360 EIGFINYYGMQRFGTTAVPTYQIGRAILQNNWNEVMDLILKPRPGAEKGYLVKCREEWAK 419
Query: 202 TDDIDGTLRKLPRHLVAERAILQ-CLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
T D L+KLP E +L+ LK N + A IPR R+MY+HSYQS++WN+
Sbjct: 420 TRDPAAALKKLPVKRCVEGQLLRGLLKYGMKNIISAFGIIPRNNRLMYIHSYQSYVWNNM 479
Query: 261 ASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHP 320
S R++++G V GDL
Sbjct: 480 VSKRIEEYGLR-AVPGDLT----------------------------------------- 497
Query: 321 DGRHNLVKTVTAADINSG---KYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLT 377
+K TA I G YTI DVV+PLPG V+YP + + E Y + D +++
Sbjct: 498 ------LKGATAVHIEEGDVDNYTIHDVVMPLPGFDVVYPKHKIGEAYKEMLVADNLDIN 551
Query: 378 ESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKI 427
H ++++ S++G YR++ +P + WE++ Y D PL TDLDK+
Sbjct: 552 NMRHKIRDY---SLSGAYRKIIIRPQNVNWEVVAYDDPKIPLFTTDLDKL 598
Score = 45.1 bits (105), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 492 SQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
+ GK ALK+ +LP S YATMAIRE+LK TS+ LN
Sbjct: 608 TDGKFRALKMEFSLPPSTYATMAIREVLKMDTSIKNQTQLN 648
>gi|68483406|ref|XP_714359.1| potential U2 snRNA pseudouridine synthase [Candida albicans SC5314]
gi|46435918|gb|EAK95290.1| potential U2 snRNA pseudouridine synthase [Candida albicans SC5314]
Length = 759
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 182/537 (33%), Positives = 274/537 (51%), Gaps = 107/537 (19%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
+L F +YK+N+DT E I K+L I + +AGTKD+R + QR ++ + ++ AL
Sbjct: 279 YLHFTVYKQNRDTMEVANNIGKLLRINHKFINYAGTKDRRGATCQRFSINHGKVLRVNAL 338
Query: 91 NK-RLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGV-----------------VVDSED 132
NK + G LG F Y L LG L GN FTI +R + E
Sbjct: 339 NKSKRNGFTLGSFSYEDHPLKLGDLKGNEFTIVIRDIKPHHQQQQQQEQQPQDQSQSIES 398
Query: 133 VIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEI 192
++ + SL +NGFINYFG+QRFGS S+ TH G +L W+ V+++L +E
Sbjct: 399 IVTSCFESLQKNGFINYFGMQRFGSFSISTHEFGKFILNENWQEFVELLLSDQESVAPGS 458
Query: 193 SKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKK-------------CPGNYLQALKA 239
+AR+ +K+T D TL KLP + VAE A+L+ L+ +YL+A++A
Sbjct: 459 IEARKIWKQTRDPKLTLNKLPHYFVAETAVLRVLQNESPQQKDDNNTVYSSNSYLKAIQA 518
Query: 240 IPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEY 299
IP+ LRMMY H+YQ+++WN AS R++ +G +++ GDLVF E NP+
Sbjct: 519 IPKNLRMMYGHAYQAYIWNLVASKRIELYGL-NLIEGDLVF--------EDPITNPDIVD 569
Query: 300 ESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMN 359
E D +L+E V+++T DI SGKYTI DV+LP PG ++ YP N
Sbjct: 570 E------DVVYLNEAK-----------VRSLTKQDIESGKYTIFDVILPSPGYKIEYPTN 612
Query: 360 DV-AEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYI----- 413
+ +VY + EKDG+N + + KEF S+TG YR++ K + +EL+ Y
Sbjct: 613 PILKQVYIDIMEKDGLNPYKMIRKQKEF---SLTGTYRKLMAKANNLSFELIKYKTEEGE 669
Query: 414 -----DGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLST 468
DG KPL TDL+ L+N+ KE+E K S+
Sbjct: 670 DGETGDGEKPLIRTDLE------LLNLKKEQE------------------------KKSS 699
Query: 469 ENNEAACAKEVKQPHVESVCGADSQ-GKQMALKLGLTLPSSCYATMAIRELLKTSTS 524
+N + ++ P + + D + G ++A+ L + L S YATMA+RE ++ TS
Sbjct: 700 QN---SVTTPIELP--DRIINDDKEGGNKLAVVLRMQLGVSSYATMALREFMRIDTS 751
>gi|68483315|ref|XP_714399.1| potential U2 snRNA pseudouridine synthase [Candida albicans SC5314]
gi|46435960|gb|EAK95331.1| potential U2 snRNA pseudouridine synthase [Candida albicans SC5314]
Length = 759
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 182/537 (33%), Positives = 274/537 (51%), Gaps = 107/537 (19%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
+L F +YK+N+DT E I K+L I + +AGTKD+R + QR ++ + ++ AL
Sbjct: 279 YLHFTVYKQNRDTMEVANNIGKLLRINHKFINYAGTKDRRGATCQRFSINHGKVLRVNAL 338
Query: 91 NK-RLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGV-----------------VVDSED 132
NK + G LG F Y L LG L GN FTI +R + E
Sbjct: 339 NKSKRNGFTLGSFSYEDHPLKLGDLKGNEFTIVIRDIKPHHQQQQQQEQQPQDQSQSIES 398
Query: 133 VIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEI 192
++ + SL +NGFINYFG+QRFGS S+ TH G +L W+ V+++L +E
Sbjct: 399 IVTSCFESLQKNGFINYFGMQRFGSFSISTHEFGKFILNENWQEFVELLLSDQESVAPGS 458
Query: 193 SKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKK-------------CPGNYLQALKA 239
+AR+ +K+T D TL KLP + VAE A+L+ L+ +YL+A++A
Sbjct: 459 IEARKIWKQTRDPKLTLNKLPHYFVAETAVLRVLQNESPQQKDDNNTVYSSNSYLKAIQA 518
Query: 240 IPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEY 299
IP+ LRMMY H+YQ+++WN AS R++ +G +++ GDLVF E NP+
Sbjct: 519 IPKNLRMMYGHAYQAYIWNLVASKRIELYGL-NLIEGDLVF--------EDPITNPDIVD 569
Query: 300 ESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMN 359
E D +L+E V+++T DI SGKYTI DV+LP PG ++ YP N
Sbjct: 570 E------DVVYLNEAK-----------VRSLTKQDIESGKYTIFDVILPSPGYKIEYPTN 612
Query: 360 DV-AEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYI----- 413
+ +VY + EKDG+N + + KEF S+TG YR++ K + +EL+ Y
Sbjct: 613 PILKQVYIDIMEKDGLNPYKMIRKQKEF---SLTGTYRKLMAKANNLSFELIKYKTEEGE 669
Query: 414 -----DGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLST 468
DG KPL TDL+ L+N+ KE+E K S+
Sbjct: 670 DGETGDGEKPLIRTDLE------LLNLKKEQE------------------------KKSS 699
Query: 469 ENNEAACAKEVKQPHVESVCGADSQ-GKQMALKLGLTLPSSCYATMAIRELLKTSTS 524
+N + ++ P + + D + G ++A+ L + L S YATMA+RE ++ TS
Sbjct: 700 QN---SVTTPIELP--DRIINDDKEGGNKLAVVLRMQLGVSSYATMALREFMRIDTS 751
>gi|308807603|ref|XP_003081112.1| unnamed protein product [Ostreococcus tauri]
gi|116059574|emb|CAL55281.1| unnamed protein product [Ostreococcus tauri]
Length = 640
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 186/530 (35%), Positives = 258/530 (48%), Gaps = 118/530 (22%)
Query: 3 RNSKKRKERGDNPFDSRGSEN-WPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSF 61
+ KKRK + D R S N WPE + ++++F L KENK++ E L +I++ L + +S
Sbjct: 212 KQGKKRKNQAPQVKDHRQSFNFWPEGVPEYVKFALCKENKESHEILSVIARALKVHYKSL 271
Query: 62 GFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTI 121
G +GTKDKR+V+TQ VT+ + RA +LA L L G ++G++ YV + L G LGN F I
Sbjct: 272 GISGTKDKRAVTTQHVTMRRVRAKRLAKLV--LYGCKIGNYKYVDKPLGFGDHLGNEFEI 329
Query: 122 TLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSV--PTHLVGATLLRGEWKSAVK 179
TLRG+ D ++ S SL +G INYFGLQRFG+G V TH +G LL+G W+ A+
Sbjct: 330 TLRGIDPAEVDKVEESVRSLESSGTINYFGLQRFGNGDVKHATHKIGIELLKGNWQGAID 389
Query: 180 MILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKA 239
++L PR+GER +++ AR ++ET D + L+ PR AERA+L+
Sbjct: 390 LLLLPRDGERGDVAAARAKWQETRDPEVALKLFPRWCAAERAVLE--------------- 434
Query: 240 IPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEY 299
+K+G VV GDLV G E +
Sbjct: 435 ------------------RXXXXXXXRKYGMNTVVEGDLVLEDGGFAE-----------F 465
Query: 300 ESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMN 359
E+ D DD E P V+ VTA + S VVLPLPG VIYP N
Sbjct: 466 ENERDDDDR-------EVTMPK-----VRVVTAEEAASSSIDPQCVVLPLPGHSVIYPTN 513
Query: 360 DVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPL 419
+ ++Y +A +DGINL H+V+EFSIT+ TG+YRR F +P + + Y D L
Sbjct: 514 -MGDIYKKIAAEDGINLESVSHSVREFSITAFTGDYRRCFLRPKNISHRMTCYADPKADL 572
Query: 420 AETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEV 479
A TDLD+ VN V E L E+
Sbjct: 573 ALTDLDR------VNGVNE---------------------------LKIED--------- 590
Query: 480 KQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHK 529
G A+ + TLP S YATM +REL+K++TSV HK
Sbjct: 591 --------------GPLRAVTVKFTLPPSSYATMVLRELMKSNTSVLAHK 626
>gi|302775554|ref|XP_002971194.1| hypothetical protein SELMODRAFT_411697 [Selaginella moellendorffii]
gi|300161176|gb|EFJ27792.1| hypothetical protein SELMODRAFT_411697 [Selaginella moellendorffii]
Length = 567
Score = 268 bits (684), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 162/424 (38%), Positives = 216/424 (50%), Gaps = 97/424 (22%)
Query: 2 GRNSKKRKERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSF 61
G SK++++ D FD R WP KF +LYKENK TQ AL ++++ +G+ ++
Sbjct: 167 GHESKRQRQDSDK-FDRRAGNYWPADRHKF---YLYKENKTTQSALMIVAQKIGVKAKNM 222
Query: 62 GFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTI 121
GFAGTKDKR+V+TQR GL LG+L GNRF +
Sbjct: 223 GFAGTKDKRAVTTQR-------------------------------GLALGELSGNRFNV 251
Query: 122 TLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMI 181
LR VV +SE+ IK +A +G +GFINY+GLQRFGS VPTH +GA E +
Sbjct: 252 ILRDVVAESENAIKEAAEGMGNSGFINYYGLQRFGSCGVPTHAIGAKQQAAEESRKIFKT 311
Query: 182 LDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIP 241
P E L+ +P H++AERAIL LKK P NYLQA++ IP
Sbjct: 312 AGPAEA---------------------LKLMPHHMIAERAILLGLKKDPANYLQAIQNIP 350
Query: 242 RTLRMMYVHSYQSFLWNHAASARVQKH---------------GTEHVVVGDLVFCKGDDT 286
R +RMMYVHSYQS+LWN AASAR+QK+ G + VV GDLV+C+ D+
Sbjct: 351 RPMRMMYVHSYQSYLWNSAASARIQKYGNPSFSNGVKDVVFTGVDAVVEGDLVYCQEDEI 410
Query: 287 EKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVV 346
KE G + + E D + D E P + K +
Sbjct: 411 SKEAGRDDVDLEDLVDTDVLED---DACMELARPSRK---------------KVKVTRHG 452
Query: 347 LPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFE 406
P P NDVA VYH + + + I+L HNVKEFS+ +TG YR + KP+DFE
Sbjct: 453 PP--------PSNDVANVYHKITKMESIDLKSCTHNVKEFSVEYLTGAYRNLLVKPIDFE 504
Query: 407 WELL 410
W+ +
Sbjct: 505 WKFV 508
>gi|344302462|gb|EGW32736.1| hypothetical protein SPAPADRAFT_135987 [Spathaspora passalidarum
NRRL Y-27907]
Length = 678
Score = 268 bits (684), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 186/543 (34%), Positives = 267/543 (49%), Gaps = 98/543 (18%)
Query: 5 SKKRKERGDNPFDS------RGSENWPEQLGKF---LRFHLYKENKDTQEALGLISKMLG 55
+KK + NP DS G N+ LG F L F L+K+N+DT +A I+++L
Sbjct: 202 TKKSRGHNQNPMDSMHHVDENGIMNYG--LGPFKPYLHFTLFKQNRDTMDAGASIARLLR 259
Query: 56 ILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLL 115
I ++ +AGTKD+R + QRV++ + + ++ +LNK L I LG F Y GL LG L
Sbjct: 260 IPSKAISYAGTKDRRGATCQRVSIHRGKVLRVNSLNKGLTNIVLGGFAYEDTGLKLGDLK 319
Query: 116 GNRFTITLRGVVVDSED----VIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLR 171
GN F IT+R V DS + VI SL +G+INYFG+QRFG+ S+ +H +G L+
Sbjct: 320 GNEFLITIRDVASDSGEEVAKVIDRCFQSLRDHGYINYFGMQRFGTFSISSHTLGVHCLK 379
Query: 172 GEWKSAVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKK--- 228
+WKS + ++L +E +AR+ + ET D TL+KLP AE +IL+ L+K
Sbjct: 380 EDWKSCIDLLLSEQESIAPASVEARKVWAETRDPSETLKKLPHFFSAETSILKVLEKEKV 439
Query: 229 ------CPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCK 282
Y +A+ AIPR LRM+Y HSYQS++WN AS R++ G E + GDLV
Sbjct: 440 KEDGDYNRNAYFKAIMAIPRNLRMLYGHSYQSYIWNIVASKRIELFGLE-LQEGDLVIVD 498
Query: 283 GDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTI 342
+ K + E + S D VK +T DI SGKYTI
Sbjct: 499 NEPKPKTDEDDDFEEDVAVSTDTK--------------------VKALTKEDIESGKYTI 538
Query: 343 DDVVLPLPGSRVIYPMND-VAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQK 401
DVVLP PG +V YP N+ + +VY +DG++ + +KEF S+ G+YR + K
Sbjct: 539 FDVVLPTPGFKVTYPENETLRQVYVDTMAQDGLDPFKMARRIKEF---SLPGSYRSILAK 595
Query: 402 PMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLS 461
+ +E++ Y PL TD +I + K
Sbjct: 596 AENLTYEIVNYESNEAPLIRTD-HEILQLK------------------------------ 624
Query: 462 KDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKT 521
KQ VE DSQG ++A+ L + L S YATMA+RE ++
Sbjct: 625 ------------------KQGEVEPKRIVDSQGSKIAVVLKMQLGVSSYATMALREFMRI 666
Query: 522 STS 524
TS
Sbjct: 667 DTS 669
>gi|50311137|ref|XP_455592.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644728|emb|CAG98300.1| KLLA0F11253p [Kluyveromyces lactis]
Length = 676
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 181/526 (34%), Positives = 273/526 (51%), Gaps = 80/526 (15%)
Query: 17 DSRGSENWPEQLGK-FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQ 75
D+ G ENW K F+ F +YKENKDT + +SK + I R F+GTKD+R+V+ Q
Sbjct: 203 DANGVENWGYGPSKSFIHFTVYKENKDTMDVANTLSKFMRIPTRLIRFSGTKDRRAVTCQ 262
Query: 76 RVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVV-----DS 130
R+++ K +L LNK L G+ LG + + E L LG L GN FTI +R V + D
Sbjct: 263 RMSLSKIGLDRLNGLNKGLKGVVLGGYKFEDEPLNLGDLQGNEFTIAIRDVSLKNEGDDL 322
Query: 131 EDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERN 190
+D++ SL +NGFINYFG+QRFG+ SV TH +G LL G WK AV +I+ +E
Sbjct: 323 DDILANGMKSLEQNGFINYFGMQRFGTFSVSTHQIGQVLLSGNWKQAVDLIMAEQENVLP 382
Query: 191 EISKAREYYKETDDIDGTLRKLPRHLVAERAILQCL---KKCP-------GNYLQALKAI 240
+AR + +T + + +P +AE AIL L +KC +Y A+ I
Sbjct: 383 ISKEARRIWAQTRNPIYAAKAMPHQCLAENAILNALCHEEKCETSNDYPISSYHNAILKI 442
Query: 241 PRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYE 300
PR LR MYVH+YQS++WN AS R++ G +V+ GDLV D+T
Sbjct: 443 PRNLRTMYVHAYQSYVWNMVASERIKLFGL-NVIEGDLVV---DET-------------- 484
Query: 301 SSNDADDSSHLDEVP-ETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMN 359
S+ ++DD + DE + D + + + VTA ++ + +T++DVVLP PG ++YP N
Sbjct: 485 SAAESDDQAKQDEDDFDEDLRETKFIRARPVTAEEVAAQTFTVNDVVLPTPGFDIVYPSN 544
Query: 360 D-VAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKP 418
+ + ++Y + KD ++ + V++F S+ G+YR V KP D E+++++Y +
Sbjct: 545 ENLRQLYVDVMAKDNMDPFDMKRKVRDF---SLAGSYRNVINKPTDIEYQVVSYENPTDQ 601
Query: 419 LAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKE 478
L TDL E + N+ KD +S+ L + +K+ N +A K
Sbjct: 602 LINTDL---------------EILNANRGKDNGQKYIKSK-LERYMKVKDGNKKAVIIK- 644
Query: 479 VKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTS 524
KLG+ S YATM +REL+K TS
Sbjct: 645 --------------------FKLGV----SAYATMVLRELMKVETS 666
>gi|301123683|ref|XP_002909568.1| tRNA pseudouridine synthase D (TruD), putative [Phytophthora
infestans T30-4]
gi|262100330|gb|EEY58382.1| tRNA pseudouridine synthase D (TruD), putative [Phytophthora
infestans T30-4]
Length = 803
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 169/480 (35%), Positives = 261/480 (54%), Gaps = 29/480 (6%)
Query: 6 KKRKERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAG 65
KKRK+ D + G WP+ +L+F LYK N +T + ++K + +F +AG
Sbjct: 323 KKRKDM-DGRERNNGRAQWPKNRPDYLQFVLYKRNMETNSVMMQLAKAMNSNVSAFTYAG 381
Query: 66 TKDKRSVSTQRVTVFKQRASKLAALNKR-----LIGIRLGDFCYVKEGLLLGQLLGNRFT 120
TKDKR ++TQ TV++ +L LN+ +G+ YV E L LG L GNRF+
Sbjct: 382 TKDKRGITTQLCTVYRGSKERLETLNRAGRELDSFNFLVGNAEYVPERLNLGDLRGNRFS 441
Query: 121 ITLRGVVVD---SEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSA 177
+ +R + D S+ I + S +GFINYFGLQRFG+ ++ TH +G +L+ + K
Sbjct: 442 LAIRDLPDDETISDQQIHDAVRSWREHGFINYFGLQRFGTKAIATHEIGRAILQRDHKRV 501
Query: 178 VKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCL-KKCPGNYLQA 236
V ++L P+EG+ +I +AR+ +++ D+ L+ LP +L+AERA+LQ L Y A
Sbjct: 502 VDLLLCPQEGDATKIREARQAFQDYQDVGAALKALPPYLIAERAVLQGLGAHGLTAYATA 561
Query: 237 LKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPE 296
+++IPR LRMMY HSYQS++WN AS R+ + E VVGDLV + TE +
Sbjct: 562 IQSIPRHLRMMYTHSYQSYVWNTVASERLTQFSRELPVVGDLVIPQDTITEDSVD----- 616
Query: 297 FEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIY 356
E E + + DD ++ P T R TV D N +++I DVVLPLPG + Y
Sbjct: 617 -ESEDAGEEDDDGPANKKPRTSTEASRPEANVTVV-TDENLSQFSIYDVVLPLPGYSIKY 674
Query: 357 PMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGN 416
P N + + Y + + D +N ++L S + G+YR V +KP+D E EL + D
Sbjct: 675 PENALKQRYEEIMKTDDVNF-QALERATN-SEYHLPGSYRHVIRKPIDVEHELKRFNDPT 732
Query: 417 KPLAETDLDKIAKAKLVNIVKEEE--AVCGNKEKDPS--------DCMKQSESLSKDIKL 466
PL ETD+D++A + + + + A+C + PS + +KQS +L ++L
Sbjct: 733 IPLLETDVDRLAGRSAQSSIPDGKFRALCLEFQLGPSSYATMAVRELLKQSSNLGVQLQL 792
>gi|325183052|emb|CCA17507.1| tRNA pseudouridine synthase D (TruD) putative [Albugo laibachii
Nc14]
Length = 738
Score = 266 bits (681), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 159/432 (36%), Positives = 245/432 (56%), Gaps = 37/432 (8%)
Query: 6 KKRKERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAG 65
KKRK+ D R + W + +FL F LYK N DT + +++ + +FGFAG
Sbjct: 254 KKRKD-----VDRREANRWDKDRPEFLEFTLYKRNMDTNVVMASLARAIRCRVSNFGFAG 308
Query: 66 TKDKRSVSTQRVTVF---KQRASKLAALNKRL--IGIRLGDFCYVKEGLLLGQLLGNRFT 120
TKDKR V+TQR T++ K++ +L L++ L +G+ +V E L LG L GN F+
Sbjct: 309 TKDKRGVTTQRCTLYHGSKEQLERLNRLDRSLDEFNFLVGNTRFVPEKLKLGDLNGNHFS 368
Query: 121 ITLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM 180
IT+R V SE V+ + ++ +G+INYFGLQRFG+ S+PTH +G LLR +K A+ +
Sbjct: 369 ITIRDVCSSSETVLHDAISAWKEHGYINYFGLQRFGTRSIPTHEIGQALLRQNFKEAIDL 428
Query: 181 ILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYL-QALKA 239
I+ P+ G+ ++I +ARE +++ D+ L + P +LVAERAIL+ L++ N L QA++
Sbjct: 429 IMRPQSGDPSKIRQAREKFQQQRDVQAALLEFPPYLVAERAILEGLERHGTNALGQAVQC 488
Query: 240 IPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDD-TEKELGCVNPEFE 298
IPR LRMMY HSYQS++WN A S R+ K +EH ++GDL D ++E+ V
Sbjct: 489 IPRPLRMMYTHSYQSYVWNRAVSERLTKFSSEHPILGDLALPSDFDLVDEEVLLV----- 543
Query: 299 YESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPM 358
D DD+ + + V V + N +Y I DVVLPLPG + YP
Sbjct: 544 -----DLDDA-------KVEKRRKSEREVVPVVITEENQNQYRIQDVVLPLPGYDIKYPQ 591
Query: 359 NDVAEVYHHLAEKDGIN---LTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDG 415
N + Y L + ++ LT+++ E+ + G+YR + ++ + E+E+ Y D
Sbjct: 592 NPLLSFYEILMASENVDFQKLTQTMGG--EY---HLPGSYRHLIRRAKNVEYEIKRYDDP 646
Query: 416 NKPLAETDLDKI 427
+ L TD+DK+
Sbjct: 647 SIALLPTDVDKL 658
>gi|241758387|ref|XP_002401820.1| tRNA pseudouridine synthase D, putative [Ixodes scapularis]
gi|215508508|gb|EEC17962.1| tRNA pseudouridine synthase D, putative [Ixodes scapularis]
Length = 549
Score = 266 bits (679), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 180/505 (35%), Positives = 248/505 (49%), Gaps = 96/505 (19%)
Query: 24 WPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQR 83
WP G + F LYKEN DT EA+ +I+ +L P F +AGTKDKR + Q V+V++
Sbjct: 130 WPFGRGNYTTFALYKENADTMEAVNMIASVLRFKPSCFAYAGTKDKRGKTCQLVSVYRVP 189
Query: 84 ASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGR 143
A L LNKR + +G+ Y ++ + LG LLGNRF I LR VV D I+ + SL
Sbjct: 190 ARNLLGLNKRNWALVIGNVSYEEKAIKLGDLLGNRFAIILRDVVGSRSD-IEEAVQSLSE 248
Query: 144 NGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETD 203
GFINY+G QRFG+ SV T +G LL+G +++AV ++L PREG ++S RE + +
Sbjct: 249 KGFINYYGTQRFGTTSVSTQEIGRELLKGNYEAAVHLVLKPREGGNAQLSACREEWARSG 308
Query: 204 DIDGTLRKLPRHLVAERAILQ-CLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAAS 262
D L L E +LQ LK P ++ AL +IPR +R+MY+H YQS++WN S
Sbjct: 309 DALKALSLLQHKGSIEGLLLQGLLKNGPKAFVCALLSIPRNVRLMYIHGYQSYIWNKVVS 368
Query: 263 ARVQKHGTEHVVVGDLVF---CKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDH 319
R++K G V+ GDLV G E E G + + E
Sbjct: 369 RRLRKFGL-AVLEGDLVVPADVPGAVLESEEGKFSKQAE--------------------- 406
Query: 320 PDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTES 379
+VK + AA T+ DVVLPLPG V YP N++AE Y + +DG+ L
Sbjct: 407 ----PTVVKDIAAA-------TLGDVVLPLPGYSVKYPKNEIAEWYKEMLAEDGLTLDSF 455
Query: 380 LHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEE 439
+ + F +M+G YR + P D WE +TY D +KPL +DLD
Sbjct: 456 NNKNRAF---AMSGCYRHIVTIPRDVTWEEVTYEDPSKPLLLSDLD-------------- 498
Query: 440 EAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMAL 499
A+ GN + QP S +G +M
Sbjct: 499 -ALRGNTLPE-------------------------------QPGSGS-----HRGLRMEF 521
Query: 500 KLGLTLPSSCYATMAIRELLKTSTS 524
L PSSCYATMAIREL ++ T+
Sbjct: 522 SL----PSSCYATMAIRELTRSDTT 542
>gi|254583886|ref|XP_002497511.1| ZYRO0F07260p [Zygosaccharomyces rouxii]
gi|238940404|emb|CAR28578.1| ZYRO0F07260p [Zygosaccharomyces rouxii]
Length = 677
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 174/526 (33%), Positives = 264/526 (50%), Gaps = 82/526 (15%)
Query: 17 DSRGSENWPEQLGK-FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQ 75
D+ G ENW K F+ LYKENKDT +A+ +I+K L + R+ +GTKD+R+V+ Q
Sbjct: 206 DANGVENWGYGPAKDFIHLTLYKENKDTMDAINIIAKYLRLPARAMRSSGTKDRRAVTCQ 265
Query: 76 RVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLR------GVVVD 129
R++V + +L ALN+ L G+ LG + + L LG L GN F + +R G
Sbjct: 266 RLSVSRIGLDRLNALNRTLKGMVLGGYKFEDRSLSLGDLKGNEFVVVIRDAKLHEGADKS 325
Query: 130 SEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGER 189
+ V+K SL GF+NYFG+QRFG+ S+ TH+VG LL W+ A ++IL ++
Sbjct: 326 LDQVLKDGCQSLAERGFVNYFGMQRFGTFSISTHVVGKELLLNNWQGAAELILSDQDSVL 385
Query: 190 NEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCL---------KKCPGNYLQALKAI 240
+AR+ + E+ D + ++K+PR VAE AIL L + Y A+ I
Sbjct: 386 PTSKEARKIWSESKDANSAMKKMPRQCVAENAILSYLSTQKKEEDGQYSANAYYTAIMKI 445
Query: 241 PRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYE 300
PR LR MYVH+YQSF+WN AS R++ +G +V+ GDLV + D+++
Sbjct: 446 PRNLRTMYVHAYQSFVWNTIASKRIEMYGL-NVMEGDLVISENDESK------------- 491
Query: 301 SSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMND 360
A DS DE E D + + +T +I S K+ I+DVVLP PG ++YP N
Sbjct: 492 ----AADSLEEDEFDE-DVRTAQFVRARPITKDEIESQKFKIEDVVLPTPGFDIVYPPNQ 546
Query: 361 -VAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPL 419
++++Y + +KD ++ + V++F S+ G+YR V QKP ++ ++ Y + L
Sbjct: 547 KLSDLYVEIMKKDAMDPFDMRRKVRDF---SLAGSYRNVIQKPAALDYRIIHYSSPTQQL 603
Query: 420 AETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMK-QSESLSKDIKLSTENNEAACAKE 478
TDL E + + KD +C K E L +
Sbjct: 604 INTDL---------------EILHNQRAKD--NCQKYMKEKLDR---------------- 630
Query: 479 VKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTS 524
D G+ A+ L L S YATM +REL+K +S
Sbjct: 631 ---------FTPDKGGEHTAVVLKFQLGVSAYATMVLRELMKVESS 667
>gi|403165182|ref|XP_003325211.2| hypothetical protein PGTG_06748 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375165564|gb|EFP80792.2| hypothetical protein PGTG_06748 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 818
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 177/544 (32%), Positives = 269/544 (49%), Gaps = 100/544 (18%)
Query: 2 GRNSKKRKERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGI-LPRS 60
G+NS++R + D+ N P ++ F L K N++TQ+AL +IS+ L + R
Sbjct: 317 GKNSERRPKPVDH--------NPP-----YVHFTLQKTNRETQDALSIISRNLHCHVSRD 363
Query: 61 FGFAGTKDKRSVSTQRVTVFK------------------QRASKLAALNKR-LIGIRLGD 101
+GTKDKRSVS QRV++ + Q+ K +R GIR+GD
Sbjct: 364 LAISGTKDKRSVSCQRVSLKRGKRTVGDVWETLNNIRRNQKFGKPITFTQRGDKGIRVGD 423
Query: 102 FCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVP 161
F Y L LG+L GNRFT+ LR V +++K + +L +GF+NYFG+QRFG+ SV
Sbjct: 424 FTYESAPLKLGELNGNRFTVVLRDVNPTQPEILKEAVKTLSTHGFLNYFGMQRFGTTSVG 483
Query: 162 THLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERA 221
TH+VG +LL+ W A+ +I+ + GE + AR +++ D G L +PR VAER
Sbjct: 484 THIVGLSLLQANWDLAIDLIMRKKLGETQDSELARSLWEDKKDAKGALDLMPRRCVAERC 543
Query: 222 ILQCLKK--CPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLV 279
ILQ K + AL +IP+ L+MMY+H+YQS++WN S RV+ +G + V+GDLV
Sbjct: 544 ILQFFSKQAVKTDKCGALASIPKNLKMMYIHAYQSYIWNTILSRRVELYGCDKPVIGDLV 603
Query: 280 FCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGK 339
D+ K + E +E+ DA + P ++KTV +
Sbjct: 604 LL---DSGKTHELIEDEEAFETIVDAQTKPKSNNTPSV-------KVLKTVEDCET---- 649
Query: 340 YTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVF 399
+TI DVVLPL G ++YP N++ + Y + +DG++ + + E+ SM G YR++
Sbjct: 650 FTIYDVVLPLVGYNIVYPENELGDQYLKIIRQDGLDPDKLYRSQAEY---SMGGTYRKIL 706
Query: 400 QKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSES 459
P D + ++ Y D + PL + D D + +L N+
Sbjct: 707 HLPRDVQSQVYEYEDPDLPLTQADEDSLLGFELPNL------------------------ 742
Query: 460 LSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELL 519
E + Q K +ALK+ TL SS YATMA+RE+L
Sbjct: 743 ------------------------KEWTAESAEQKKNLALKVEFTLGSSAYATMALREIL 778
Query: 520 KTST 523
K+ T
Sbjct: 779 KSDT 782
>gi|303323826|ref|XP_003071902.1| tRNA pseudouridine synthase D family protein [Coccidioides
posadasii C735 delta SOWgp]
gi|240111609|gb|EER29757.1| tRNA pseudouridine synthase D family protein [Coccidioides
posadasii C735 delta SOWgp]
Length = 764
Score = 265 bits (677), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 173/545 (31%), Positives = 269/545 (49%), Gaps = 86/545 (15%)
Query: 19 RGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVT 78
RG W E G++L F +YKENKDT E + +++ + + R F FAGTKD+R V+ QR
Sbjct: 262 RGKLGWSEVGGEYLHFTIYKENKDTMEVINFLARQMKLGVRGFNFAGTKDRRGVTVQRAC 321
Query: 79 VFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGV----------VV 128
VF+ A +LA +N+ L +GDF Y K+GL LG+L GN F ITLR +
Sbjct: 322 VFRVDAGRLANMNRILRNAAVGDFEYQKQGLELGELGGNEFVITLRDCDFPVTLGEDPIA 381
Query: 129 DSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL------ 182
+ D++ + +L G+ NY+GLQRFG+ + T +G +L+ ++K A + IL
Sbjct: 382 AASDLVSTAMENLREKGYFNYYGLQRFGTFATRTDTIGLKMLQSDFKGACECILHYTPAC 441
Query: 183 ------DPREGE-----RNEISKAR--EYYKETDDIDGTLRKLPRHLVAERAILQCLKKC 229
PREG+ ++IS+A ++ T L K+PR AE I++ L +
Sbjct: 442 LDAGQGKPREGDDILLSSDDISRAEAIHIFESTGQAGPALAKMPRKFTAESNIIKHLGRK 501
Query: 230 PGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKE 289
+Y+ AL+ IPR LR+MYVH+YQS +WN + R + +G + VV GDLV E +
Sbjct: 502 QNDYMGALQTIPRNLRLMYVHAYQSLVWNFSVGERWRLYG-DKVVEGDLVLV----NEFK 556
Query: 290 LGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPL 349
+P E D + D + D + +T+ + SGKYTI D+VLPL
Sbjct: 557 DRDSDPTIAEEVDADGEAIVLPDTADSSVSVDSVFERARALTSEEAASGKYTIFDIVLPL 616
Query: 350 PGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKP-MDFEWE 408
PG +IYP N + E Y + + +++ TS++G+YR++ +P D+ +
Sbjct: 617 PGYDIIYPPNKMTEFYKTFMGSERGGKLDPFDMRRKWKETSLSGSYRKILSRPGPDYSLD 676
Query: 409 LLTYIDGNKPLAETDLDKIAK------AKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSK 462
+ Y D N+ +TDL++I + AK N E A GN++ D
Sbjct: 677 VRMYTDDNEQFIKTDLERIRQNAHNFPAKSTN----ENAKVGNEDMD------------- 719
Query: 463 DIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTS 522
D Q +++A+ + L +S YATMA+REL+KT
Sbjct: 720 ----------------------------DKQKEKLAVVVKFQLGASQYATMALRELMKTG 751
Query: 523 TSVAF 527
+ +
Sbjct: 752 GAKVY 756
>gi|320032179|gb|EFW14134.1| pseudouridine synthase [Coccidioides posadasii str. Silveira]
Length = 764
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 173/545 (31%), Positives = 269/545 (49%), Gaps = 86/545 (15%)
Query: 19 RGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVT 78
RG W E G++L F +YKENKDT E + +++ + + R F FAGTKD+R V+ QR
Sbjct: 262 RGKLGWSEVGGEYLHFTIYKENKDTMEVINFLARQMKLGVRGFNFAGTKDRRGVTVQRAC 321
Query: 79 VFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGV----------VV 128
VF+ A +LA +N+ L +GDF Y K+GL LG+L GN F ITLR +
Sbjct: 322 VFRVDAGRLANMNRILRNAAVGDFEYQKQGLELGELGGNEFVITLRDCDFPVTLGEDPIA 381
Query: 129 DSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL------ 182
+ D++ + +L G+ NY+GLQRFG+ + T +G +L+ ++K A + IL
Sbjct: 382 AASDLVSTAMENLREKGYFNYYGLQRFGTFATRTDTIGLKMLQSDFKGACECILHYTPAC 441
Query: 183 ------DPREGE-----RNEISKAR--EYYKETDDIDGTLRKLPRHLVAERAILQCLKKC 229
PREG+ ++IS+A ++ T L K+PR AE I++ L +
Sbjct: 442 LDAGQGKPREGDDILLSSDDISRAEAIHIFESTGQAGPALAKMPRKFTAESNIIKHLGRK 501
Query: 230 PGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKE 289
+Y+ AL+ IPR LR+MYVH+YQS +WN + R + +G + VV GDLV E +
Sbjct: 502 QNDYMGALQTIPRNLRLMYVHAYQSLVWNFSVGERWRLYG-DKVVEGDLVLV----NEFK 556
Query: 290 LGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPL 349
+P E D + D + D + +T+ + SGKYTI D+VLPL
Sbjct: 557 DRDSDPTIAEEVDADGEAIVLPDTADSSVSVDSVFERARALTSEEAASGKYTIFDIVLPL 616
Query: 350 PGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKP-MDFEWE 408
PG +IYP N + E Y + + +++ TS++G+YR++ +P D+ +
Sbjct: 617 PGYDIIYPPNKMTEFYKTFMGSERGGKLDPFDMRRKWKETSLSGSYRKILSRPGPDYSLD 676
Query: 409 LLTYIDGNKPLAETDLDKIAK------AKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSK 462
+ Y D N+ +TDL++I + AK N E A GN++ D
Sbjct: 677 VRMYTDDNEQFIKTDLERIRQNAHNFPAKSTN----ENAKVGNEDMD------------- 719
Query: 463 DIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTS 522
D Q +++A+ + L +S YATMA+REL+KT
Sbjct: 720 ----------------------------DKQKEKLAVVVKFQLGASQYATMALRELMKTG 751
Query: 523 TSVAF 527
+ +
Sbjct: 752 GAKVY 756
>gi|281204453|gb|EFA78648.1| tRNA pseudouridine synthase D [Polysphondylium pallidum PN500]
Length = 665
Score = 264 bits (675), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 174/522 (33%), Positives = 257/522 (49%), Gaps = 115/522 (22%)
Query: 5 SKKRKERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFA 64
S R RGDN + WP K+L+F L+KENK++ +A +ISK L + R F A
Sbjct: 195 SSSRGSRGDN------RDAWPAGRPKYLQFVLFKENKESMDAFNIISKQLKVNQRIFSMA 248
Query: 65 GTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLG-DFCYVKEGLLLGQLLGNRFTITL 123
GTKDKR V+TQ VT FK +L +N RL G+++G DF YV + L LG L GNRFTI +
Sbjct: 249 GTKDKRGVTTQSVTAFKMNHKRLLGVNSRLYGMKVGGDFKYVDKHLQLGDLSGNRFTIVI 308
Query: 124 RGVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILD 183
R + D + ++++S + GFINY+GLQRFG+GSV TH +G +++RGEW+ +K++L
Sbjct: 309 RDISADDQ-LVESSVEQFKKTGFINYYGLQRFGTGSVSTHQIGKSIIRGEWEEVIKLMLY 367
Query: 184 PREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRT 243
PREGE+ E+ AR+ YK++ D+ +R LP+
Sbjct: 368 PREGEKEELRVARQKYKDSGDVKALMRSLPK----------------------------- 398
Query: 244 LRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSN 303
S R++ +G E VVGDLV D K+ N SN
Sbjct: 399 ----------------MTSERIKLYGHELPVVGDLVAVDIDKKAKDDNEANNNNNEGESN 442
Query: 304 DADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAE 363
+D+ +EVP+ D D + VT D+ +G+Y I VVLP+ G+ V+YP+N + E
Sbjct: 443 VLEDAQD-EEVPDDDDSDFH---IVHVTEEDVKAGRYNISQVVLPMFGNDVLYPLNKIGE 498
Query: 364 VYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETD 423
+Y + +D N+TE K I ++ G+YR++ D +++ Y D K L D
Sbjct: 499 LYKQVIAED--NITEKNFTNKS-RIYNLKGSYRKIISFANDIQYKTFRYDDYTKALTIND 555
Query: 424 LDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPH 483
L+++ N +++P D QP+
Sbjct: 556 LERL-----------------NGKEEPQD----------------------------QPN 570
Query: 484 VESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSV 525
GK AL++ LP+S YATMA RELLK +T +
Sbjct: 571 ----------GKFRALRISFNLPTSSYATMAYRELLKLTTDI 602
>gi|344230067|gb|EGV61952.1| tRNA pseudouridine synthase D [Candida tenuis ATCC 10573]
Length = 669
Score = 264 bits (675), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 177/537 (32%), Positives = 277/537 (51%), Gaps = 91/537 (16%)
Query: 6 KKRKERGDNPFDSRGSENWPEQLGKF---LRFHLYKENKDTQEALGLISKMLGILPRSFG 62
K+ + N D G N+ LG F L F +YKEN++T E I+K L + +S
Sbjct: 195 KRYPQESINHVDENGVINYG--LGPFKNYLHFTVYKENRETMEVASTIAKFLRLPAKSIR 252
Query: 63 FAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTIT 122
F+GTKD+R V+ Q+ + K + +++ LNK L + G F Y L LG L GN F IT
Sbjct: 253 FSGTKDRRGVTCQKFAINKGKVVRVSQLNKGLKNVVFGGFSYEDNNLNLGDLKGNEFLIT 312
Query: 123 LRGV--VVDSED---VIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSA 177
+R V + +++D +I + +L GFINY+G+QRFG+ S TH G LL+G+WK A
Sbjct: 313 IRDVKPIDETQDLGQIIDSGFETLKSKGFINYYGMQRFGTFSTSTHTYGVKLLKGDWKGA 372
Query: 178 VKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGN----- 232
+++L ++ + +AR + ET + L+ +P AE +IL+ L N
Sbjct: 373 AELLLAEQDISAPDSKEARRIWAETSNPSLALKMMPSRFTAEHSILKTLASEKLNEDGEY 432
Query: 233 ----YLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEK 288
Y +++ AIPR LR+MYVH+YQS++WNH AS R++ G ++VV GDLV + + +
Sbjct: 433 GDQSYFKSIMAIPRNLRIMYVHAYQSYIWNHVASKRMELFG-QNVVEGDLVIAENEPVKT 491
Query: 289 ELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLP 348
E+ D++ EV + D + + +T ADI+SGKY+I DVVLP
Sbjct: 492 EV---------------DENG---EVFKEDVAENNFTRARPLTKADIDSGKYSIYDVVLP 533
Query: 349 LPGSRVIYPMN-DVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEW 407
+PG ++YP N + +VY K+G++ V+EF S++G+YR + KP + E+
Sbjct: 534 MPGFDIVYPTNKQLEQVYVEEMGKEGLDPFSMSRRVREF---SLSGSYRNLICKPSNVEY 590
Query: 408 ELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLS 467
+++ Y + +PL TDL+ + +AK K +SL + I
Sbjct: 591 KIVKYKEDAEPLVRTDLE-LLRAK-----------------------KNGDSLERYI--- 623
Query: 468 TENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTS 524
N+E +G + A+ L + L S YATMA+RE +K TS
Sbjct: 624 --NHE--------------------EGDKTAIVLKMQLGVSSYATMALREFMKADTS 658
>gi|50549649|ref|XP_502295.1| YALI0D01628p [Yarrowia lipolytica]
gi|49648163|emb|CAG80481.1| YALI0D01628p [Yarrowia lipolytica CLIB122]
Length = 649
Score = 264 bits (674), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 181/498 (36%), Positives = 250/498 (50%), Gaps = 82/498 (16%)
Query: 30 KFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTV--FKQRASKL 87
+F+ F LYKENK+T EA+ LISK L P F +AGTKDKR V+ Q++T ++
Sbjct: 221 EFVHFSLYKENKETMEAVNLISKFLKAKPSQFTYAGTKDKRGVTVQKMTARGISGGVERV 280
Query: 88 AALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFI 147
LNK L G++LG F Y E L LG L GN F IT+R + + I A+ SL +GFI
Sbjct: 281 KGLNKTLRGMKLGSFAYSDEHLRLGDLEGNEFIITIREID-GKQSEIDAALTSLKEHGFI 339
Query: 148 NYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDDIDG 207
NY+G+QRFG+ S+ TH VG +L +W V M+L P+E E +AR+ +K+T D
Sbjct: 340 NYYGMQRFGTFSISTHEVGRHVLASQWDEVVDMLLRPQELALEESKEARQIWKDTKDAGK 399
Query: 208 TLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQK 267
L K+P AE AIL+ LK P N L A+ IPR LR+MY H+YQS++WN S RV
Sbjct: 400 ALTKMPFRCAAECAILKALKNDP-NSLNAVNRIPRNLRIMYGHAYQSYVWNAVVSKRVA- 457
Query: 268 HGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLV 327
G + VV GDLV DD + G + E SN+ + L P T
Sbjct: 458 MGLK-VVEGDLVI---DDNANKDGKI------EDSNE-ESGQDLKIDPFTR--------A 498
Query: 328 KTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFS 387
+ +TA +I S K++I D+VLP PG VIYP + + E Y ++ KD ++ + ++++
Sbjct: 499 RPITAEEIASNKFSIYDIVLPTPGHDVIYPTH-LEEEYKNIMAKDNLDPHKMARTIRDY- 556
Query: 388 ITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKE 447
S+ G YR VF KP EW Y + + TDLD + K
Sbjct: 557 --SLAGGYRHVFAKPSGVEWFFEKYSNPVEQFVNTDLDMLEKG----------------- 597
Query: 448 KDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQ-GKQMALKLGLTLP 506
V+ D Q G ++ L L L L
Sbjct: 598 ------------------------------------VDRYTHCDEQDGDKLGLVLKLQLG 621
Query: 507 SSCYATMAIRELLKTSTS 524
S+ YATMA+RE++K TS
Sbjct: 622 SAQYATMALREVMKVDTS 639
>gi|119185943|ref|XP_001243578.1| hypothetical protein CIMG_03019 [Coccidioides immitis RS]
gi|392870282|gb|EAS32079.2| TruD family tRNA pseudouridine synthase [Coccidioides immitis RS]
Length = 764
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 170/539 (31%), Positives = 271/539 (50%), Gaps = 74/539 (13%)
Query: 19 RGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVT 78
RG W E G++L F +YKENKDT E + +++ + + R F FAGTKD+R V+ QR
Sbjct: 262 RGKLGWSEVGGEYLHFTIYKENKDTMEVINFLARQMKLGVRGFKFAGTKDRRGVTVQRAC 321
Query: 79 VFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGV----------VV 128
VF+ A +LA +N+ L +GDF Y K+GL LG+L GN F ITLR +
Sbjct: 322 VFRVDAGRLANMNRILRNAAVGDFEYQKQGLELGELGGNEFVITLRDCDFPVTLGEDPIA 381
Query: 129 DSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL------ 182
+ D++ + +L G+ NY+GLQRFG+ + T +G +L+ ++K A + IL
Sbjct: 382 AASDLVSTAMENLREKGYFNYYGLQRFGTFATRTDTIGLKMLQSDFKGACECILHYTPAC 441
Query: 183 ------DPREGE-----RNEISKAR--EYYKETDDIDGTLRKLPRHLVAERAILQCLKKC 229
PREG+ ++IS+A ++ T L K+PR AE I++ L +
Sbjct: 442 LDAGQGKPREGDDILLSSDDISRAEAIHIFESTGQAGPALAKMPRKFTAESNIIKHLGRK 501
Query: 230 PGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKE 289
+Y+ AL+ IPR LR+MYVH+YQS +WN A R + +G + VV GDLV E +
Sbjct: 502 QNDYMGALQTIPRNLRLMYVHAYQSLVWNFAVGERWRLYG-DKVVEGDLVLV----NEFK 556
Query: 290 LGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPL 349
+P E D + D + D + +T+ + SGKYTI D+VLPL
Sbjct: 557 DRDSDPTIAEEVDADGEAIVLPDTADSSVSVDSVFERARALTSEEAASGKYTIFDIVLPL 616
Query: 350 PGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKP-MDFEWE 408
PG +IYP N + E Y + + +++ TS++G+YR++ +P D+ +
Sbjct: 617 PGYDIIYPPNKMTEFYKTFMGSERGGKLDPFDMRRKWKETSLSGSYRKILSRPGPDYSLD 676
Query: 409 LLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLST 468
+ Y D N+ +TDL++I + N P + ++++ K+
Sbjct: 677 VRMYTDDNEQFIKTDLERIRQ---------------NAHNFP------GKPINENAKVGD 715
Query: 469 ENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAF 527
E+ + D Q +++A+ + L +S YATMA+REL+KT + +
Sbjct: 716 EDMD------------------DKQKEKLAVVVKFQLGASQYATMALRELMKTGGAKVY 756
>gi|294655982|ref|XP_458211.2| DEHA2C12342p [Debaryomyces hansenii CBS767]
gi|199430764|emb|CAG86287.2| DEHA2C12342p [Debaryomyces hansenii CBS767]
Length = 701
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 182/546 (33%), Positives = 277/546 (50%), Gaps = 86/546 (15%)
Query: 1 MGRNSK----KRKERGDNPFDSRGSENWPEQLGKF---LRFHLYKENKDTQEALGLISKM 53
+ +NSK K + N D G N+ LG F L F +YKEN++T E ISK
Sbjct: 210 LAKNSKNPRRKNPQESINHVDENGVVNYG--LGPFKYFLHFTVYKENRETMEVASTISKF 267
Query: 54 LGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQ 113
L I +S +AGTKD+R ++ QR + + + +++++LNK L LG F Y + L LG
Sbjct: 268 LRIPSKSIRYAGTKDRRGITCQRFCIHRGKVARVSSLNKGLKNAVLGGFAYEDKSLGLGD 327
Query: 114 LLGNRFTITLRGVVV-----DSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGAT 168
L GN F IT+R + + EDV+ SL G+INY+G+QRFG+ S+ TH++G
Sbjct: 328 LNGNEFVITIRDIKSFNPEENVEDVVSKCFTSLKDKGYINYYGMQRFGTFSISTHVLGIF 387
Query: 169 LLRGEWKSAVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKK 228
+L+ +WK AV++IL +E + +AR + ET + L+K+PR AE AIL L K
Sbjct: 388 ILKEDWKGAVELILSEQEIVAPDSIEARRIWAETTNASMALKKMPRRCTAEHAILSTLSK 447
Query: 229 CP---------GNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLV 279
P +Y +++ AIPR LR+MY H+YQS++WN S R + G E V GDLV
Sbjct: 448 EPYDDDENFGKQSYFKSIMAIPRNLRIMYAHAYQSYIWNLVVSKRFELFGLE-VQEGDLV 506
Query: 280 FCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGK 339
D E + G E + + A D ++ + ++ ++ SGK
Sbjct: 507 IV---DKETKTGANLEEDDDFEEDVATD---------------KYIRARPLSKEEVESGK 548
Query: 340 YTIDDVVLPLPGSRVIYPMN-DVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRV 398
YTI DVVLP PG ++YP N + +VY KDG++ V+EF S+ G+YR +
Sbjct: 549 YTIYDVVLPTPGFDIVYPSNKQLEQVYVDAMAKDGLDPHNMARRVREF---SLAGSYRPI 605
Query: 399 FQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSE 458
KP + ++++ Y + + L TDL+ ++++ KE E+ K + D + E
Sbjct: 606 MGKPSNLSYDIVNYSESTESLVRTDLE------ILHLKKEAES----KGEPIPDISRVIE 655
Query: 459 SLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIREL 518
S S D AD + + ++LG+ S YATMA+RE
Sbjct: 656 SSSAD--------------------------ADKKAVVLRMQLGV----SSYATMALREF 685
Query: 519 LKTSTS 524
+K TS
Sbjct: 686 MKADTS 691
>gi|358056711|dbj|GAA97374.1| hypothetical protein E5Q_04052 [Mixia osmundae IAM 14324]
Length = 838
Score = 261 bits (668), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 172/542 (31%), Positives = 262/542 (48%), Gaps = 112/542 (20%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G ++ F L K N+D +AL ++++ L + R G AGTKDKR+VS QRV++ + R+ K
Sbjct: 316 GPYIHFTLQKTNRDNSDALNILARALNVQGRDIGTAGTKDKRAVSVQRVSLDRGRSKKSL 375
Query: 89 ALNKRLI---------------------------------------GIRLGDFCYVKEGL 109
L+ GIR+GD CY E L
Sbjct: 376 DDIWYLMHNRGNEQGSNDRGRGGRGGRGGRGGGRRGPDQQHTRGDKGIRIGDLCYADEPL 435
Query: 110 LLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATL 169
LG L GNRF ITLR + V+S++++ + +L R+GFINY+G QRFG+ ++PTH +G L
Sbjct: 436 KLGDLKGNRFLITLRDLQVESDEIVDKAMATL-RHGFINYYGTQRFGTATIPTHAIGLAL 494
Query: 170 LRGEWKSAVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKC 229
L +++ A +I+ PR E+ R+ Y ET D L PR LVAER IL+ L K
Sbjct: 495 LHNDYELACDLIMRPRADEQEPAGSIRKTYAETGDAKAALAAFPRWLVAERHILEGLIKD 554
Query: 230 PGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKE 289
P ++ AL+ IP+ LRMM+V++YQS++WN AS R + +G + VVGDLV D +
Sbjct: 555 PQDHKNALQRIPKQLRMMFVNAYQSYIWNRVASERAKLYGCDKPVVGDLVMLS--DMQ-- 610
Query: 290 LGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPL 349
E E ++ +D + + T R VK + AD+ S +I DVVLP
Sbjct: 611 --------EGEEADLPEDDEAISKQTRTLRAKSRIAAVKILREADLAS--VSIHDVVLPQ 660
Query: 350 PGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWEL 409
G +YP N++ E+ + ++DG+ T+ + E+ S++G+YR+ KP +
Sbjct: 661 VGFNCVYPANELGELAKAILKEDGLEWTDLVREKAEY---SLSGSYRKFLHKPGHVSHTI 717
Query: 410 LTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTE 469
L Y D N PLA +D E+A+ G +P
Sbjct: 718 LNYSDPNFPLAASD---------------EDALLGEPMPEPE------------------ 744
Query: 470 NNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHK 529
A +++ AL++ L L ++ YATMA+RE++K T +
Sbjct: 745 ------ANPIRR----------------ALQIDLHLGTAAYATMALREIMKVDTGSNHQR 782
Query: 530 TL 531
L
Sbjct: 783 AL 784
>gi|255725556|ref|XP_002547707.1| hypothetical protein CTRG_02014 [Candida tropicalis MYA-3404]
gi|240135598|gb|EER35152.1| hypothetical protein CTRG_02014 [Candida tropicalis MYA-3404]
Length = 705
Score = 261 bits (667), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 174/518 (33%), Positives = 260/518 (50%), Gaps = 95/518 (18%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
+L F +YK+N+DT E ++K+L I + +AGTKD+R + Q+ ++ + ++ AL
Sbjct: 265 YLHFTVYKQNRDTMEVANNMAKLLRINNKFITYAGTKDRRGATCQKFSIHNGKVLRVNAL 324
Query: 91 NK-RLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVV-----DSEDVIKASANSLGRN 144
NK R G LG F Y L LG GN FTI +R D E + + SL N
Sbjct: 325 NKSRKYGFTLGSFSYEDYPLKLGDSNGNEFTIVIRDAKTIDGSEDLESTVSSCFESLKNN 384
Query: 145 GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDD 204
GFINYFG+QRFGS SV TH G +L +W+ V+++L +E AR+ +KET +
Sbjct: 385 GFINYFGMQRFGSFSVSTHEYGRLVLSQKWEEFVELLLSEQESVAPASIDARKIWKETRN 444
Query: 205 IDGTLRKLPRHLVAERAILQCLKKCPGN---------YLQALKAIPRTLRMMYVHSYQSF 255
D L+ LP + VAE AIL+ LK N YL+ +++IPR LRMMY H+YQ++
Sbjct: 445 ADQALQALPHYFVAETAILKTLKNETQNEDKKYTKNVYLKCIQSIPRNLRMMYGHAYQAY 504
Query: 256 LWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVP 315
+WN AS R++ +G + +V GDLVF +D+++ L +D ++L+E
Sbjct: 505 VWNRVASKRIELYGLD-LVEGDLVF---EDSQQVLD--------------EDVAYLNEAK 546
Query: 316 ETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMND-VAEVYHHLAEKDGI 374
VK++T DI SGKYTI DV+LP PG ++ YP N+ + VY KD +
Sbjct: 547 -----------VKSLTKEDIESGKYTIFDVILPSPGYKIKYPGNETLKNVYVETMAKDDL 595
Query: 375 NLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVN 434
+ N+KEF S+TG YR++ + + +E++ Y D KPL TDL+
Sbjct: 596 DPFSMARNIKEF---SLTGTYRKLMAQANNLSYEIVKYSDDEKPLIRTDLEL-------- 644
Query: 435 IVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQG 494
+++ E NE A + + G
Sbjct: 645 -----------------------------LQIKQETNEDAP----------RLIPNEEGG 665
Query: 495 KQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
+ A+ L + L S YATMA+RELL+ V + +N
Sbjct: 666 DKFAVVLKMQLGVSSYATMALRELLRCHFQVFWRVLVN 703
>gi|241952368|ref|XP_002418906.1| pseudouridine synthase, putative [Candida dubliniensis CD36]
gi|223642245|emb|CAX44213.1| pseudouridine synthase, putative [Candida dubliniensis CD36]
Length = 748
Score = 261 bits (667), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 177/524 (33%), Positives = 266/524 (50%), Gaps = 90/524 (17%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
+L F +YK+N+DT E I+K+L + + +AGTKD+R + QR ++ + ++ AL
Sbjct: 277 YLHFTVYKQNRDTMEVANNIAKLLRMNHKFINYAGTKDRRGATCQRFSINHGKVLRVNAL 336
Query: 91 NK-RLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGV-----------VVDSEDVIKASA 138
NK + G LG F Y L LG L GN FTI +R + E ++ +
Sbjct: 337 NKSKKNGFTLGSFSYEDHPLKLGDLKGNEFTIVIRDIKPHHQLTEGDESKSIESIVTSCF 396
Query: 139 NSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREY 198
SL +NGFINYFG+QRFGS S+ TH G +L W+ V+++L +E +AR+
Sbjct: 397 ESLQKNGFINYFGMQRFGSFSISTHEFGKLILNENWQEFVELLLSDQESVAPGSIEARKI 456
Query: 199 YKETDDIDGTLRKLPRHLVAERAILQCLKK------------CPGNYLQALKAIPRTLRM 246
+K+T D TL KLP + VAE A+L+ L+ +YL+A++AIP+ LRM
Sbjct: 457 WKQTRDPYQTLNKLPHYFVAETAVLKILQNESQQQQTDDKFYSQNSYLKAIQAIPKNLRM 516
Query: 247 MYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDAD 306
MY H+YQ+++WN AS R++ +G L +GD + + E
Sbjct: 517 MYGHAYQAYIWNLVASKRIELYG--------LNLIEGDLVFDDDDDNDTTVIDE------ 562
Query: 307 DSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDV-AEVY 365
D +L+E VK++T DI SGKYTI DV+LP PG ++ YP N + +VY
Sbjct: 563 DVVYLNEAK-----------VKSLTKEDIESGKYTIFDVILPSPGYKIEYPTNPILKQVY 611
Query: 366 HHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYI-----DGNKPLA 420
+ EKDG+N + KEF S+TG YR++ K + +EL+ Y DG KPL
Sbjct: 612 IDIMEKDGLNPFKMTRKQKEF---SLTGTYRKLMAKANNLSFELIKYNNDEDGDGEKPLI 668
Query: 421 ETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVK 480
TDL+ L+ + KE+E N+ P + + IK +T + E+A
Sbjct: 669 RTDLE------LLQLKKEQEKKISNEVDTPVELP------DRIIKTNTTDKESA------ 710
Query: 481 QPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTS 524
++A+ L + L S YATMA+RE ++ TS
Sbjct: 711 --------------NKLAVVLRMQLGVSSYATMALREFMRIDTS 740
>gi|213514210|ref|NP_001135209.1| pseudouridylate synthase 7 homolog [Salmo salar]
gi|209154172|gb|ACI33318.1| Pseudouridylate synthase 7 homolog [Salmo salar]
Length = 577
Score = 261 bits (666), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 142/392 (36%), Positives = 211/392 (53%), Gaps = 51/392 (13%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+WP+ G F F LYKEN+DT EA+ ++SK L + P F + GTKDKR+++ Q + V K
Sbjct: 230 SWPKSRGAFCHFVLYKENRDTMEAINVLSKFLRMRPNVFSYMGTKDKRAITVQEIAVLKI 289
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
A +L+ LNK L +LG+FCY K L LG+L GN FT+ +R + +E+ ++ + +SL
Sbjct: 290 TAERLSHLNKCLNNFKLGNFCYKKHPLKLGELQGNHFTVVIRN-ITGTEEQVQQAMSSLR 348
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKE 201
GFINY+G+QRFG+ +VPTH VG +L+ WK + +IL PR G E+ + K RE + +
Sbjct: 349 ETGFINYYGMQRFGTTAVPTHQVGKAILQDNWKEVIDLILKPRPGAEKGYLVKCREEWAQ 408
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKKC-PGNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
+ D + L+KLP E +L+ L N + A IPR R+MY+HSYQSF+WN
Sbjct: 409 SQDPEAALQKLPVKRCVEGQLLRGLSMYGKKNIITAFAMIPRNNRLMYIHSYQSFMWNTM 468
Query: 261 ASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHP 320
S R++ G + V GDLV
Sbjct: 469 VSRRIEAFGLK-AVEGDLVL---------------------------------------- 487
Query: 321 DGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESL 380
R ++AA+ + ++I DVV+PLPG VIYP + V + Y + D +++
Sbjct: 488 --RGGTAFVLSAAEAET--HSIQDVVMPLPGFDVIYPTHHVGKGYREMLSADNLDIDNMR 543
Query: 381 HNVKEFSITSMTGNYRRVFQKPMDFEWELLTY 412
H V+++ S+ G YRR+ KP D W + Y
Sbjct: 544 HRVRDY---SLAGAYRRILIKPSDVSWSVTLY 572
>gi|409050304|gb|EKM59781.1| hypothetical protein PHACADRAFT_114987 [Phanerochaete carnosa
HHB-10118-sp]
Length = 867
Score = 261 bits (666), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 159/443 (35%), Positives = 232/443 (52%), Gaps = 51/443 (11%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFK--------- 81
++ F L K N+DTQ+AL +S+ L + AGTKDKR V+ QRV++ +
Sbjct: 359 YVHFTLQKTNRDTQDALAHLSRSLHCSVKDLSVAGTKDKRGVTVQRVSLRRGNKTVEDVW 418
Query: 82 --------QRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDV 133
+R+++ + GIR+ D Y + L LG L GN F ITLR V VDS D
Sbjct: 419 RTANGLGGRRSTEDVLTRRGERGIRIADLNYRRASLELGMLKGNAFVITLRNVQVDSLDT 478
Query: 134 IKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEIS 193
+ + N++ GFINY+G+QRFG+ ++PTH +G LL+ EW AV +IL R GE E++
Sbjct: 479 LDRAMNTIKTKGFINYYGMQRFGTAAIPTHSIGLALLKSEWHKAVDLILRVRPGEHPEVT 538
Query: 194 KAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPG---NYLQALKAIPRTLRMMYVH 250
AR + D+D L +PR +VAER IL+ KK G N + AL IPR+LR+MYVH
Sbjct: 539 AARNAWLVDGDLDRALELMPRRVVAERCILESFKKQGGDTRNAMGALSTIPRSLRLMYVH 598
Query: 251 SYQSFLWNHAASARVQKHGTEHVVVGDLVF-CKGDDTEKELG--------------CVNP 295
+YQS++WN S R++ +G E VGDLVF G++ E +P
Sbjct: 599 AYQSYVWNAIVSERIRLYGAEKPAVGDLVFETDGENAEATAATAADDGDDAGAETVAESP 658
Query: 296 EFEYESSNDADDSS-----HLDEVPETDHPDGRHN------LVKTVTAADINSGKYTIDD 344
E E A++ S DE P R VK +T A+++ K+TI D
Sbjct: 659 EDELLIEEKAEEVSKPGGAQGDEDAPAGKPAKRSRKPWEPPRVKALTEANVD--KHTIFD 716
Query: 345 VVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMD 404
V++PLPG V +P + E Y DG++ KE+ S+ G+YR++ P +
Sbjct: 717 VIMPLPGRDVSFPGGALGERYKDFLRADGLDPEHFERKQKEY---SLGGSYRKILHLPKE 773
Query: 405 FEWELLTYIDGNKPLAETDLDKI 427
W +L Y D + LA+ D D++
Sbjct: 774 LSWSVLRYTDPDVALAQADEDQL 796
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 29/46 (63%)
Query: 487 VCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
V D+ GK MAL++ L L ++ YATMA+RE+ KT TS F L
Sbjct: 801 VPAVDADGKFMALQVRLQLGTAAYATMALREVTKTETSSHFQSGLT 846
>gi|353234596|emb|CCA66620.1| related to PUS7-pseudouridine synthase [Piriformospora indica DSM
11827]
Length = 812
Score = 261 bits (666), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 166/514 (32%), Positives = 255/514 (49%), Gaps = 94/514 (18%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRAS----- 85
++ F L K N+DT + L +++ML + + AGTKDKR V+ QRV + + R +
Sbjct: 328 YIHFTLQKTNRDTSDVLAYLARMLKVDGKLLTTAGTKDKRGVTCQRVCLKRGRMTVEDVW 387
Query: 86 -KLAALNKRLI----------GIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVI 134
++ +R + G+R+ D Y K L LG L GN F ITLR V S +VI
Sbjct: 388 DRINQAGRRTLTQILEERGERGVRVSDIDYRKGFLQLGMLKGNEFLITLRNVKAASIEVI 447
Query: 135 KASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISK 194
S N L GFINY+G+QRFG+ S+PTH +G +L+ +W AV +IL PR GE EI +
Sbjct: 448 NESMNILKTKGFINYYGMQRFGTASIPTHAIGLAILQSDWAKAVDLILRPRPGEAPEIQE 507
Query: 195 AREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPG---NYLQALKAIPRTLRMMYVHS 251
AR + +++ L +PR +VAER +L+ K+ G N + AL +IPR LRMMYVH+
Sbjct: 508 ARFAWSAEKNLEKALALMPRRVVAERCLLESFKRMNGDTRNLIGALSSIPRNLRMMYVHA 567
Query: 252 YQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHL 311
YQS++WN S R++++G + +VGD+V+ E + E ++ + +
Sbjct: 568 YQSYVWNAIVSERIKRYGLDGPIVGDIVY--------EEKISDGESDHAPTGRGGRGGY- 618
Query: 312 DEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEK 371
P+ P VK ++ D+ YTI DV++PLPG+ V YP ++ E+Y +
Sbjct: 619 --KPQRRPP----RKVKVLSWEDL--ANYTIFDVLMPLPGTDVAYPGGELGELYREFLKL 670
Query: 372 DGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAK 431
DG++ + +E+ S+ G+YR++ P WE + Y D PLA++D DK+
Sbjct: 671 DGLDPSNFNRKQREY---SLAGSYRKIVHLPKHVSWETMHYTDPEIPLAQSDEDKLLGL- 726
Query: 432 LVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGAD 491
DP + L+ I+
Sbjct: 727 -----------------DPPQTDEDGRFLALQIR-------------------------- 743
Query: 492 SQGKQMALKLGLTLPSSCYATMAIRELLKTSTSV 525
L+LG ++CYATMA+RE+ K TS
Sbjct: 744 -------LQLG----TACYATMALREVTKVDTST 766
>gi|336373853|gb|EGO02191.1| hypothetical protein SERLA73DRAFT_48912 [Serpula lacrymans var.
lacrymans S7.3]
Length = 703
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 175/532 (32%), Positives = 257/532 (48%), Gaps = 91/532 (17%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVT----------VF 80
++ F L K N+DTQ+AL +S+ L + + AGTKDKR V+ QRV+ V+
Sbjct: 211 YIHFTLQKTNRDTQDALAHLSRTLRVNLKDLAVAGTKDKRGVTVQRVSLRRGNKTVEDVW 270
Query: 81 KQ------RASKLAALNKR-LIGIRLGDFCYVKEGLLLGQLLGNRFTITLR------GVV 127
K R S L +R G+R+ D Y K L LG L GN F ITLR V
Sbjct: 271 KAANGLGGRKSMQDILTQRGERGVRIADLNYRKASLDLGMLKGNAFLITLRFLCQYRNVQ 330
Query: 128 VDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG 187
VDS + + S + + GFINY+G+QRFG+ +VPTH +G L+ +W AV +IL R G
Sbjct: 331 VDSVETLDRSLSIMKYKGFINYYGMQRFGTAAVPTHSIGLAFLKSDWHKAVALILQKRPG 390
Query: 188 ERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPG---NYLQALKAIPRTL 244
E ++ ARE + D++ L +PR +VAER IL+ +K G N + AL IPR L
Sbjct: 391 EHPDVVAAREAWLIDGDLERALDLMPRRVVAERCILESYQKQKGETRNAMGALSTIPRNL 450
Query: 245 RMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSND 304
R+MY+H+YQS++WN S R+++HG++ V GDLVF K D K + + +
Sbjct: 451 RLMYIHAYQSYVWNAIVSERIRRHGSDKPVPGDLVFEK-DTNSKVGDGGDMDVDGPDGEP 509
Query: 305 ADDSSHLDEVPETDHPDGRHNL----VKTVTAADINSGKYTIDDVVLPLPGSRVIYPMND 360
D L+E T + VKT+T D + +Y+I DV++PLPG V YP +
Sbjct: 510 GTDEKPLEEAENTVTRSRKKPWVAPRVKTLTEEDAD--QYSIFDVIMPLPGKDVAYPGGE 567
Query: 361 VAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLA 420
+ E Y +DG++ + KE+ + G+YR++ P D W +L Y D + LA
Sbjct: 568 LGEQYREFLRRDGLDPDNYVRKQKEY---ILGGSYRKILLLPKDVSWSVLRYTDPDVALA 624
Query: 421 ETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVK 480
+ D DK+ DP ++ + ++ I L+ E
Sbjct: 625 QADEDKLLGF------------------DPPVVVEDGKFMALQINLTLE----------- 655
Query: 481 QPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
++ YATMA+RE+ KT TS F L
Sbjct: 656 --------------------------TAAYATMALREVTKTETSSHFQTGLT 681
>gi|307172919|gb|EFN64086.1| Pseudouridylate synthase 7-like protein [Camponotus floridanus]
Length = 683
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 174/515 (33%), Positives = 269/515 (52%), Gaps = 78/515 (15%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
NW + G + F L+K N DT +AL ++ L I P +F + GTKD+R+ +TQ V++ +
Sbjct: 207 NWKNRDGDYCHFLLHKVNMDTIDALNQLAINLRIQPNNFTYPGTKDRRAWTTQWVSLKRV 266
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
A + +KR G +G+F Y K L LG L GN+F I LR V E+ I+ + S+
Sbjct: 267 DARDILRASKRTHGAYVGNFKYAKNSLKLGMLRGNQFKIALRNVCGTDEE-IEQAMTSVR 325
Query: 143 RNGFINYFGLQRFGS-GSVPTHLVGATLLRGEWKSAVKMILDPREGERN-EISKAREYYK 200
NGFINY+GLQRFG+ S+PTH +G LL+G+W A+++IL PR GE++ E+++AR+ Y
Sbjct: 326 DNGFINYYGLQRFGTVASIPTHEIGKRLLQGKWHEAIELILKPRPGEQDKELAEARQIYA 385
Query: 201 ETDDIDGTLRKLPRHLVAERAILQCLK-KCPGNYLQALKAIPRTLRMMYVHSYQSFLWNH 259
ET D K+ R E +L+ L+ N L AL +IPR +R+MY+H+YQSF+WNH
Sbjct: 386 ETKDAHTAYAKIKRIDKIEARLLKGLQVSGEKNPLGALDSIPRNIRLMYIHAYQSFVWNH 445
Query: 260 AASARVQKHGTEHVVVGDLVF----CKGDDTEKEL------GCVNPEFEYESSNDADDSS 309
S R+++ GT +V+VGDLV+ C+ + T++ + G V E + SS + + S
Sbjct: 446 IVSRRIKQFGT-NVIVGDLVYDKQSCQENVTDEIMNYPLNDGDVR-ETDVISSEEINIDS 503
Query: 310 HLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLA 369
+ E ++VK++ D+ YT+ DVV+P PG +V YP A Y
Sbjct: 504 EASKTNEESLEQNNFSVVKSLKEEDL--PNYTLADVVMPQPGWKVTYPSYAKA-WYGEFL 560
Query: 370 EKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAK 429
KD + T+ N K++ S++G YR++ Q PM W+++ Y + + L +D+D++ K
Sbjct: 561 AKDELT-TDLKQNNKKY---SLSGAYRKILQIPMKLSWKIMYYKNKHDNLILSDIDQMRK 616
Query: 430 AKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCG 489
+ + DP
Sbjct: 617 -------------IASPQNDPD-------------------------------------- 625
Query: 490 ADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTS 524
GK AL + ++L S YATM +RE+LK TS
Sbjct: 626 ----GKNKALIIEMSLEPSTYATMGLREILKNDTS 656
>gi|449296154|gb|EMC92174.1| hypothetical protein BAUCODRAFT_78724 [Baudoinia compniacensis UAMH
10762]
Length = 763
Score = 258 bits (659), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 182/547 (33%), Positives = 275/547 (50%), Gaps = 85/547 (15%)
Query: 18 SRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRV 77
++G W E G++L F LYKENKDT EAL I+ L I ++F FAGTKD+R+V+ QRV
Sbjct: 240 TKGKLGWEELGGEYLHFTLYKENKDTMEALSFIAAQLKIPAKNFEFAGTKDRRAVTVQRV 299
Query: 78 TVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSE------ 131
V++ +A +LA LN G R+GDF Y K+GL LGQL GN F +TL+ +++E
Sbjct: 300 AVYRIKAERLAGLNAMARGWRVGDFTYEKQGLELGQLAGNEFVLTLKDCHLENEHGLDTA 359
Query: 132 -------DVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-- 182
++ +A + GF+NY+GLQRFG+ S TH VG +L+G+ + A+ IL
Sbjct: 360 ARSEQVKSIVSDAAEAFKTKGFLNYYGLQRFGTFSTGTHTVGMKMLQGDLEGAIDSILSY 419
Query: 183 ----------DPREGE-----RNEISKA---REYYKETDDIDGTLRKLPRHLVAERAILQ 224
+ +G+ R++I +A R++ + T ++ +P+ AE AI+Q
Sbjct: 420 PPSLLPENTANDNDGKALKIPRDDIDRADTIRKWREGTINVQDIRNGMPKRFQAEAAIMQ 479
Query: 225 CLKK------CP---GNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVV 275
L K P ++ AL I R LR+MYVH+YQS +WN A R + +G + VV
Sbjct: 480 YLSKKDKKSGLPIQDNDWQGALMQIQRNLRLMYVHAYQSLVWNTVAGKRWEVYGNK-VVE 538
Query: 276 GDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADI 335
GDLV D E G V+ E + E + E+D R + AD+
Sbjct: 539 GDLVVIGEKDGEDRNG-VSEEVDEEGEPIVRPTGEDSGSKESDFTRAR-----PLNKADV 592
Query: 336 NSGKYTIDDVVLPLPGSRVIYPMNDVAEVYH-HLAEKDGINLTESLHNVKE-FSITSMTG 393
SG+Y I DVVLPLPG V YP N+ + Y + ++G L H ++ + S++G
Sbjct: 593 ESGRYDIFDVVLPLPGFDVEYPANESGKFYEDFMGSEEGGKLDP--HKMRRAWKDVSLSG 650
Query: 394 NYRRVFQKPMD--FEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPS 451
YR++ +P+ EWE+ Y+ L TDL ++ VN ++ G+ D S
Sbjct: 651 GYRKMMARPLKGVVEWEVKEYVQDEDQLVSTDLGRLQAQTSVNGAGALTSINGSAAPDMS 710
Query: 452 DCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYA 511
D Q + S ++ +S K++A+ + L SS YA
Sbjct: 711 D---QPDGHSVEMNIS---------------------------KKLAVIMKFQLGSSQYA 740
Query: 512 TMAIREL 518
T+A+REL
Sbjct: 741 TVALREL 747
>gi|149046568|gb|EDL99393.1| pseudouridylate synthase 7 homolog (S. cerevisiae) (predicted),
isoform CRA_a [Rattus norvegicus]
Length = 392
Score = 258 bits (659), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 164/490 (33%), Positives = 244/490 (49%), Gaps = 106/490 (21%)
Query: 45 EALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCY 104
+A+ ++SK L + P F + GTKDKR+++ Q + V K A +LA LNK L+ +LG+F Y
Sbjct: 2 DAINVLSKYLRVKPNIFSYMGTKDKRAITVQEIAVLKISAQRLAHLNKCLMNFKLGNFSY 61
Query: 105 VKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHL 164
K L LG+L GN FT+ LR + E V +A +SL + GFINY+G+QRFG+ +VPT+
Sbjct: 62 QKTPLKLGELQGNHFTVVLRNITGTDEQVQQA-MHSLQQTGFINYYGMQRFGTTAVPTYQ 120
Query: 165 VGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKETDDIDGTLRKLPRHLVAERAIL 223
VG +L+ W + +IL PR G E+ + K RE + +T D L+KLP E +L
Sbjct: 121 VGRAILQNSWTEVMDLILKPRSGAEKGYLVKCREEWAKTKDPASALKKLPVKRCVEGQLL 180
Query: 224 QCLKKCP-GNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCK 282
+ L K N + A IPR R+MY+HSYQS++WN S R++ +G + V GDLV K
Sbjct: 181 RGLSKYGLKNIVSAFGIIPRNNRLMYIHSYQSYVWNSMVSRRIELYGLKP-VPGDLVL-K 238
Query: 283 GDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTI 342
G +++++E DIN+ Y+I
Sbjct: 239 G----------------------ATATYIEE-------------------DDINN--YSI 255
Query: 343 DDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKP 402
DVV+PLPG VIYP + ++E Y + D +++ H ++++ S++G YR++ +P
Sbjct: 256 HDVVMPLPGFDVIYPKHKISEAYREMLAADNLDIDNMRHTIRDY---SLSGAYRKIIIRP 312
Query: 403 MDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSK 462
WE++ Y D PL TD+D +
Sbjct: 313 QSVSWEVVAYDDPKIPLFNTDVDNL----------------------------------- 337
Query: 463 DIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTS 522
E K P V + S+G+ ALK+ +LP S YATMAIRE+LK
Sbjct: 338 ---------------EGKPPPVFA-----SEGRYRALKMDFSLPPSTYATMAIREVLKMD 377
Query: 523 TSVAFHKTLN 532
TS+ LN
Sbjct: 378 TSIKNQTQLN 387
>gi|327293395|ref|XP_003231394.1| pseudouridine synthase [Trichophyton rubrum CBS 118892]
gi|326466510|gb|EGD91963.1| pseudouridine synthase [Trichophyton rubrum CBS 118892]
Length = 773
Score = 258 bits (658), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 179/546 (32%), Positives = 275/546 (50%), Gaps = 93/546 (17%)
Query: 19 RGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVT 78
RG W E G +L F LYKENKDT E + +S+ L + P++F FAGTKD+R + QRV+
Sbjct: 266 RGKLGWSELGGDYLHFTLYKENKDTMEVISFLSRQLKVAPKAFQFAGTKDRRGATAQRVS 325
Query: 79 VFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLR------GVV----V 128
VF+ ++ LN L +GD+ Y K+GL LG+L GN F ITLR GVV V
Sbjct: 326 VFRIYPDRMPKLNASLRMAAIGDYEYQKQGLELGELNGNEFVITLRDCQFPEGVVDIGNV 385
Query: 129 DSEDVIKASANSLGRN-------GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMI 181
S + I +G++ G+ NY+GLQRFG+ + T G +LRGE+K A + I
Sbjct: 386 SSPETIAKVTELVGKSLRNLRERGYFNYYGLQRFGTFATRTDTTGLKMLRGEFKEACESI 445
Query: 182 L--------------DPREGERNEIS-------KAREYYKETDDIDGTLRKLPRHLVAER 220
L +G++ +IS KA ++ T + L LPR AE
Sbjct: 446 LHYSPIALAAAQDLSSEDQGQKPQISTDDILRAKAIHIFQTTGNGRDALEVLPRKFTAES 505
Query: 221 AILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVF 280
I++ L + +Y AL++IPR LR+MYVH+YQS +WN AA R + +G + VV GDLV
Sbjct: 506 NIIRLLCQRKNDYFGALQSIPRNLRLMYVHAYQSLVWNFAAGERWRLYG-DKVVEGDLVL 564
Query: 281 CKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNL---VKTVTAADINS 337
E + E DAD + +P+ D ++ + +TA + S
Sbjct: 565 VSEFKDETKAAGQQAEV------DADGEEIV--LPDADDSAAVDDMFERARALTAEEAAS 616
Query: 338 GKYTIDDVVLPLPGSRVIYPMNDVAEVY-HHLAEKDGINLTESLHNVKEFSITSMTGNYR 396
GKY+I D+VLPLPG ++YP N + + Y + + G NL + + + S++G+YR
Sbjct: 617 GKYSIFDIVLPLPGFDILYPANKMTDFYKEFMGSEKGGNL-DPFDMRRSWRDISLSGSYR 675
Query: 397 RVFQKP-MDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMK 455
++ +P D+ +E+ Y ++ +TDL+++ KE + G+ D
Sbjct: 676 KMLSRPGADYSFEVKPYRAEDEQFVKTDLERL---------KENASKSGDGNND------ 720
Query: 456 QSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAI 515
NN+++ E ++ Q +++A+ L L +S YATMA+
Sbjct: 721 --------------NNQSSVTSETQE-----------QPEKLAVILKFQLGASQYATMAL 755
Query: 516 RELLKT 521
REL+KT
Sbjct: 756 RELMKT 761
>gi|307215183|gb|EFN89955.1| Pseudouridylate synthase 7-like protein [Harpegnathos saltator]
Length = 730
Score = 258 bits (658), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 184/550 (33%), Positives = 279/550 (50%), Gaps = 96/550 (17%)
Query: 9 KERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKD 68
K R DN D W ++ G + F L+K N DT +AL ++ L I P F +AGTKD
Sbjct: 201 KMRKDNRID------WKKRGGDYCHFLLHKVNMDTMDALNQLAASLRIRPDIFNYAGTKD 254
Query: 69 KRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVV 128
+R+ +TQ V++ K + + K + G+ +G+F Y K+ L LG L GN+F I LR V
Sbjct: 255 RRAWTTQWVSLKKIDPRDILRMGKTIHGVYVGNFKYAKDCLKLGMLHGNQFRIALRN-VQ 313
Query: 129 DSEDVIKASANSLGRNGFINYFGLQRFGS-GSVPTHLVGATLLRGEWKSAVKMILDPREG 187
S++ I+ + SL NGFINY+GLQRFGS ++PTH +G LL+G+W A+++IL PRE
Sbjct: 314 GSDEEIEQAMTSLRDNGFINYYGLQRFGSIAAIPTHDIGKRLLQGKWHEAIELILKPRER 373
Query: 188 ERN-EISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYL-QALKAIPRTLR 245
E++ E+++AR+ Y ET D ++ R E +L+ L+ N L AL +PR +R
Sbjct: 374 EQDKELAEARQIYAETKDAHAAYARIKRVDKIEARLLKGLQISGNNNLVGALDFVPRNIR 433
Query: 246 MMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVF----CKGDDTEK-------ELGCVN 294
+MY+H+YQSF+WNH S R+++ GT +V+VGDLV+ CK D T + + V
Sbjct: 434 LMYIHAYQSFVWNHIVSRRIKQFGT-NVIVGDLVYDKQNCKEDITNETTDRSLDDTDNVK 492
Query: 295 PEFEYESSNDADDSSHLD----EVPETDHP------DGRHNL--VKTVTAADINSGKYTI 342
E + S+ D S +D E PET +G ++L VK +T D+++ YT+
Sbjct: 493 DESDVTSTEKKDIDSIVDKETEEKPETTKATDDLTEEGVNDLPVVKILTKEDLSN--YTL 550
Query: 343 DDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKP 402
DV++P PG +V YP + +KDG+ N K S+ G+YR++ P
Sbjct: 551 ADVIIPQPGWKVTYPPY-AKPWFDEFLDKDGLTTDLRQKNKK----YSLGGSYRKILGIP 605
Query: 403 MDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSK 462
D W+++ Y + + L +D+D++ K
Sbjct: 606 TDLSWKIMRYNEKHDDLILSDIDEMRK--------------------------------- 632
Query: 463 DIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTS 522
H + D Q K AL + + L SS YATMA+RE+LK
Sbjct: 633 --------------------HAPAQDKPDGQYK--ALIVEMCLKSSNYATMALREILKND 670
Query: 523 TSVAFHKTLN 532
TS L+
Sbjct: 671 TSAETQAALS 680
>gi|212533715|ref|XP_002147014.1| pseudouridine synthase TruD/Pus7, putative [Talaromyces marneffei
ATCC 18224]
gi|210072378|gb|EEA26467.1| pseudouridine synthase TruD/Pus7, putative [Talaromyces marneffei
ATCC 18224]
Length = 726
Score = 257 bits (657), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 178/556 (32%), Positives = 284/556 (51%), Gaps = 96/556 (17%)
Query: 4 NSKKRKERG--DNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSF 61
N ++ RG P W E+ G+FL F +YKENKDT E + +++ L + + F
Sbjct: 213 NRHQKSARGFRGEPTQRPAKSGWEERGGQFLHFTIYKENKDTMEVISFLARSLKMNGKGF 272
Query: 62 GFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTI 121
FAGTKD+R V+ QR VFK A +LA +NK L +GDF Y G+ LG L GN F I
Sbjct: 273 QFAGTKDRRGVTVQRACVFKVVAERLAGINKTLRNAAVGDFEYKTHGMDLGDLEGNEFVI 332
Query: 122 TLRGV-------------VVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGAT 168
TLR V ++++++ + +L G++NY+G+QRFG+ ++ TH +G
Sbjct: 333 TLRDCQFLDSAGQAKPVSVSEAKELVGQAMYNLRERGYLNYYGMQRFGTFAIGTHEIGIK 392
Query: 169 LLRGEWKSAVKMIL--DPR----------EGERNEIS---KAR----EYYKETDDIDGTL 209
+L+G++K AV ++L P+ + E IS KAR ++ T++++ L
Sbjct: 393 MLQGDFKGAVDLLLHFSPQTLAAAQNTDGDNEGPLISSDDKARAEAIHIFRTTNNVNNAL 452
Query: 210 RKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHG 269
K+PR AE +I++ L + +Y AL++IPR LR+MYVH+YQS +WN AA R + +G
Sbjct: 453 DKMPRKFSAESSIIRFLGRGNNDYFGALQSIPRNLRLMYVHAYQSLIWNLAAGERWRLYG 512
Query: 270 TEHVVVGDLVFC---KGDDTEKELGCVNPEFEYESSNDADDSSH-LDEVPETDHPDGRHN 325
+ VV GDL+ K T + V+ + E A D SH +D+V P
Sbjct: 513 -DKVVEGDLIITNQEKSQATAADDVAVDADGEVVVVAQAQDRSHAVDDVFIRARP----- 566
Query: 326 LVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKE 385
+TA + SGKYTI D+VLPLPG V+YP N + E Y L + + ++
Sbjct: 567 ----LTAEEAASGKYTIFDIVLPLPGYDVVYPANQMTEFYKTLMASERGGGLDPFDMRRK 622
Query: 386 FSITSMTGNYRRVFQKP-MDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCG 444
+ S++G+YR++ +P ++ +++ Y D ++ TDLD++ + ++ K++E
Sbjct: 623 WKDVSLSGSYRKLLSRPGPEYSFDVRAYTDDDEQFVGTDLDRL---RGMDKTKKDE---- 675
Query: 445 NKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLT 504
++ ++ + A AK +A+ L
Sbjct: 676 ---------------------VADDSTQTADAK-------------------IAVVLKFQ 695
Query: 505 LPSSCYATMAIRELLK 520
L SS YATMA+REL+K
Sbjct: 696 LGSSQYATMALRELMK 711
>gi|326482968|gb|EGE06978.1| tRNA pseudouridine synthase D [Trichophyton equinum CBS 127.97]
Length = 774
Score = 257 bits (657), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 181/547 (33%), Positives = 274/547 (50%), Gaps = 94/547 (17%)
Query: 19 RGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVT 78
RG W E G +L F LYKENKDT E + +S+ L + P++F FAGTKD+R + QRV+
Sbjct: 266 RGKLGWSELGGDYLHFTLYKENKDTMEVISFLSRQLKVAPKAFQFAGTKDRRGATAQRVS 325
Query: 79 VFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLR------GVV----V 128
VF+ ++ LN L +GD+ Y K+GL LG+L GN F ITLR GVV V
Sbjct: 326 VFRIYPDRMPKLNASLRMAAIGDYEYQKQGLELGELNGNEFVITLRDCQFPEGVVENGNV 385
Query: 129 DSEDVIKASANSLGRN-------GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMI 181
S + I +G++ G+ NY+GLQRFG+ + T G +LRGE+K A + I
Sbjct: 386 SSPETIAKVTELVGKSLRDLRERGYFNYYGLQRFGTFATRTDTTGLKMLRGEFKEACESI 445
Query: 182 L--DP-------------REGERNEIS-------KAREYYKETDDIDGTLRKLPRHLVAE 219
L P +E +R +IS KA ++ T + L LPR AE
Sbjct: 446 LHYSPIALAAAQDVSSGDQEAQRPQISTDDILRAKAIHIFQTTGNGRDALEVLPRKFTAE 505
Query: 220 RAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLV 279
I++ L + +Y AL++IPR LR+MYVH+YQS +WN AA R + +G + VV GDLV
Sbjct: 506 SNIIRLLCQRKNDYFGALQSIPRNLRLMYVHAYQSLVWNFAAGERWRLYG-DKVVEGDLV 564
Query: 280 FC-KGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNL---VKTVTAADI 335
+ D K G ++ DAD + +P+ D ++ + +TA +
Sbjct: 565 LASEFKDETKATG-------QQAEVDADGEEIV--LPDADDSAAVDDMFERARALTAEEA 615
Query: 336 NSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNY 395
SGKY+I D+VLPLPG ++YP N + + Y + + + + S++G+Y
Sbjct: 616 ASGKYSIFDIVLPLPGFDILYPANKMTDFYKEFMGSEKGGKLDPFDMRRSWRDISLSGSY 675
Query: 396 RRVFQKP-MDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCM 454
R++ +P D+ +E+ Y ++ +TDL+++
Sbjct: 676 RKMLSRPGADYSFEVKPYRAEDEQFVKTDLERL--------------------------- 708
Query: 455 KQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMA 514
E+ SK S +NN+ + A E A Q +++A+ L L +S YATMA
Sbjct: 709 --KENASKSGDGSNDNNQPSAAPE-----------ALEQPEKIAVILKFQLGASQYATMA 755
Query: 515 IRELLKT 521
+REL+KT
Sbjct: 756 LRELMKT 762
>gi|302667627|ref|XP_003025395.1| hypothetical protein TRV_00456 [Trichophyton verrucosum HKI 0517]
gi|291189503|gb|EFE44784.1| hypothetical protein TRV_00456 [Trichophyton verrucosum HKI 0517]
Length = 773
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 180/546 (32%), Positives = 272/546 (49%), Gaps = 93/546 (17%)
Query: 19 RGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVT 78
RG W E G +L F LYKENKDT E + +S+ L + P++F FAGTKD+R + QRV+
Sbjct: 266 RGKLGWSELGGDYLHFTLYKENKDTMEVISFLSRQLKVAPKAFQFAGTKDRRGATVQRVS 325
Query: 79 VFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLR------GVV----V 128
VF+ ++ LN L +GD+ Y K+GL LG+L GN F ITLR GVV +
Sbjct: 326 VFRIYPDRMPKLNASLRMAAIGDYEYQKQGLELGELNGNEFVITLRDCQFPEGVVDRGNI 385
Query: 129 DSEDVIKASANSLGRN-------GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMI 181
S + I +G++ G+ NY+GLQRFG+ + T G +LRGE+K A + I
Sbjct: 386 SSPETIAKVTELVGKSLCDLRERGYFNYYGLQRFGTFATRTDTTGLKMLRGEFKEACESI 445
Query: 182 L----------------DPREGERNEIS-------KAREYYKETDDIDGTLRKLPRHLVA 218
L DP +R +IS KA ++ T + L LPR A
Sbjct: 446 LHYSPIALAAAQDVSSEDP--SQRPQISTDDILRAKAIHIFQTTGNGRDALEVLPRKFTA 503
Query: 219 ERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDL 278
E I++ L + +Y AL++IPR LR+MYVH+YQS +WN AA R + +G + VV GDL
Sbjct: 504 ESNIIRLLCQRKNDYFGALQSIPRNLRLMYVHAYQSLVWNFAAGERWRLYG-DKVVEGDL 562
Query: 279 VFCKGDDTEKELGCVNPEFEYESSNDAD-DSSHLDEVPETDHPDGRHNLVKTVTAADINS 337
V E + E DAD + L + ++ D + +TA + S
Sbjct: 563 VLVSEFKDETKAAAQQAEV------DADGEEIVLPDADDSAAVDDMFERARALTAEEAAS 616
Query: 338 GKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKD-GINLTESLHNVKEFSITSMTGNYR 396
GKY+I D+VLPLPG ++YP N + + Y D G NL + + + S++G+YR
Sbjct: 617 GKYSIFDIVLPLPGFDILYPANKMTDFYKEFMGSDKGGNL-DPFDMRRSWRDISLSGSYR 675
Query: 397 RVFQKP-MDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMK 455
++ +P D+ +E+ Y ++ +TDL+++
Sbjct: 676 KMLSRPGADYSFEVKPYRAEDEQFVKTDLERL---------------------------- 707
Query: 456 QSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAI 515
E+ SK + +NN+++ E + Q +++A+ L L +S YATMA+
Sbjct: 708 -RENTSKSADGNNDNNQSSLTSETLE-----------QPEKLAVILKFQLGASQYATMAL 755
Query: 516 RELLKT 521
REL+KT
Sbjct: 756 RELMKT 761
>gi|302499314|ref|XP_003011653.1| hypothetical protein ARB_02207 [Arthroderma benhamiae CBS 112371]
gi|291175205|gb|EFE31013.1| hypothetical protein ARB_02207 [Arthroderma benhamiae CBS 112371]
Length = 773
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 180/548 (32%), Positives = 273/548 (49%), Gaps = 97/548 (17%)
Query: 19 RGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVT 78
RG W E G +L F LYKENKDT E + +S+ L + P++F FAGTKD+R + QRV+
Sbjct: 266 RGKLGWSELGGDYLHFTLYKENKDTMEVISFLSRQLKVAPKAFQFAGTKDRRGATVQRVS 325
Query: 79 VFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLR------GVV----V 128
VF+ ++ LN L +GD+ Y K+GL LG+L GN F ITLR GVV +
Sbjct: 326 VFRIYPDRMPKLNASLRMAAIGDYEYQKQGLELGELNGNEFVITLRDCQFPEGVVDRGNI 385
Query: 129 DSEDVIKASANSLGRN-------GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMI 181
S + I +G++ G+ NY+GLQRFG+ + T G +LRGE+K A + I
Sbjct: 386 SSPETIAKVTELVGKSLCDLRERGYFNYYGLQRFGTFATRTDTTGLKMLRGEFKEACESI 445
Query: 182 L----------------DPREGERNEIS-------KAREYYKETDDIDGTLRKLPRHLVA 218
L DP +R +IS KA ++ T + L LPR A
Sbjct: 446 LHYSPIALAAAQDVSSEDP--SQRPQISTDDILRAKAIHIFQTTGNGRDALEVLPRKFTA 503
Query: 219 ERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDL 278
E I++ L + +Y AL++IPR LR+MYVH+YQS +WN AA R + +G + VV GDL
Sbjct: 504 ESNIIRLLCQRKNDYFGALQSIPRNLRLMYVHAYQSLVWNFAAGERWRLYG-DKVVEGDL 562
Query: 279 VFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNL---VKTVTAADI 335
V E + E DAD + +P+ D ++ + +TA +
Sbjct: 563 VLVSEFKDETKAAAQQAEV------DADGEEIV--LPDADDSAAVDDMFERARALTAEEA 614
Query: 336 NSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKD-GINLTESLHNVKEFSITSMTGN 394
SGKY+I D+VLPLPG ++YP N + + Y D G NL + + + S++G+
Sbjct: 615 ASGKYSIFDIVLPLPGFDILYPANKMTDFYKEFMGSDKGGNL-DPFDMRRSWRDISLSGS 673
Query: 395 YRRVFQKP-MDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDC 453
YR++ +P D+ +E+ Y ++ +TDL+++
Sbjct: 674 YRKMLSRPGADYSFEVKPYRAEDEQFVKTDLERL-------------------------- 707
Query: 454 MKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATM 513
E+ SK + +NN+++ E + Q +++A+ L L +S YATM
Sbjct: 708 ---RENTSKSADGNNDNNQSSLTSETLE-----------QPEKLAVILKFQLGASQYATM 753
Query: 514 AIRELLKT 521
A+REL+KT
Sbjct: 754 ALRELMKT 761
>gi|321469719|gb|EFX80698.1| hypothetical protein DAPPUDRAFT_303955 [Daphnia pulex]
Length = 742
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 171/512 (33%), Positives = 251/512 (49%), Gaps = 69/512 (13%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
+ +F LYKEN T EA+ I++ L + AGTKDKR++++Q VT+ K+
Sbjct: 184 YTQFVLYKENLSTMEAVNTIARALKTKAGNLMTAGTKDKRAITSQLVTLKNTEPLKILNS 243
Query: 91 NKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYF 150
+ I +G+F + K+ L LG L GNRF I LR V+ D E I A+ SL GFINY+
Sbjct: 244 VRNNPKIAVGNFAFTKQPLQLGNLKGNRFIIVLRNVIGD-ESQILANLESLKEVGFINYY 302
Query: 151 GLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPRE----GERN-EISKAREYYKETDDI 205
G QRFG+ VPTH +G L+ G W+ A+ +IL+P E +R+ ++++AR YK T D
Sbjct: 303 GSQRFGTRHVPTHYIGKQLILGRWQKAIDLILEPPELNGSFQRDFDLTQARIEYKSTRDA 362
Query: 206 DGTLRKLPRHL-VAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASAR 264
K+ R L E +L LKK + + AL +IPR LR+ Y+H+YQSFLWN S R
Sbjct: 363 HKAFSKIKRSLQTIEAQLLLHLKKFGKDLVGALNSIPRNLRLTYIHAYQSFLWNTVVSKR 422
Query: 265 VQKHGTEHVVVGDLVFCKG---DDTEKELGCVNPEFE-YESSNDADDSSHLDEVPETDHP 320
+ K G + +VGDLV+ G + + E+ +N E E +ND D E +
Sbjct: 423 LSKFGPKP-IVGDLVYVPGTCDPEVDAEMELMNEESSALEPANDQSSEKEADG--EKSNA 479
Query: 321 DGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESL 380
+ N K + + N YTI+D++LPLPG + YP N+VA Y L + DG+ +
Sbjct: 480 KAQRNQRKVMFIDENNINDYTINDIILPLPGFDITYPSNEVAGWYTELLQADGLTEMDFK 539
Query: 381 HNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEE 440
+ K + ++ G YR V KP D +W+ + Y D L +D D++ K
Sbjct: 540 QSTKTY---NLGGAYRLVMSKPSDVKWKFVRYDDPTLSLIPSDWDRLEKT---------- 586
Query: 441 AVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALK 500
QP + D + L+
Sbjct: 587 ----------------------------------------QPPAAAAAVKDGAYLGLVLE 606
Query: 501 LGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
L P+S YATMA+RE++K S F +LN
Sbjct: 607 FNL--PASSYATMALREIIKMDMSAEFQTSLN 636
>gi|158294689|ref|XP_556395.3| AGAP005743-PA [Anopheles gambiae str. PEST]
gi|157015682|gb|EAL39904.3| AGAP005743-PA [Anopheles gambiae str. PEST]
Length = 701
Score = 256 bits (653), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 178/531 (33%), Positives = 259/531 (48%), Gaps = 80/531 (15%)
Query: 17 DSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQR 76
D R WP FL LYKEN DT +A + + L P +AGTKD+R+ +TQ
Sbjct: 191 DRREKWQWPHPYTYFL---LYKENLDTIQATMQLGQKLFCAPSVLTYAGTKDRRAKTTQW 247
Query: 77 VTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKA 136
+ + + +K+ A + + + +G+F + + L LGQL GNRF I LR V S+D I A
Sbjct: 248 MCIKTREPAKIVAAARHIPNVSVGNFTFKPDTLKLGQLQGNRFRIALRQVTA-SDDTINA 306
Query: 137 SANSLGRNGFINYFGLQRFG-SGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKA 195
+ GFINY+GLQRFG S +VPT+ +G +L+G WK A +IL PRE E + +
Sbjct: 307 CLEAFREKGFINYYGLQRFGNSAAVPTYKIGIEMLKGNWKGACDLILQPREDEPPFMVEM 366
Query: 196 REYYKETDDIDGTLRKL-PRHLVAERAILQCLKKCPGN-YLQALKAIPRTLRMMYVHSYQ 253
R + +T + L+KL P + E +L L N Y A+ +PR +R++Y+H+YQ
Sbjct: 367 RSIWSKTRNAAEALKKLRPSNKSVEAVLLHWLAGHGANDYFGAIGHLPRNVRLLYLHAYQ 426
Query: 254 SFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDE 313
S +WN AS R++K+G + V GDLV+ D + V P F+ D D L+
Sbjct: 427 SLIWNRVASERIRKYGFQP-VEGDLVYA---DRQNTPTVVEP-FDGGEEGDLDAVEALEA 481
Query: 314 VPE------------TDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDV 361
E T NLV+ +TA DI + +YT+ D+VLPLPG + YP N+
Sbjct: 482 QEEEPEQGGEEANDGTSDTSYFKNLVRPLTADDIAAARYTMFDIVLPLPGHDITYPDNEC 541
Query: 362 AEVYHH-LAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLA 420
A Y LAE + L+ +K S+ S+ G YR++F +P EW ++ Y + L
Sbjct: 542 ARWYEEALAENE---LSSEKLQLKSKSL-SLAGAYRKLFVRPERLEWSIVRYANPTDTLI 597
Query: 421 ETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVK 480
+DL+K+ K V
Sbjct: 598 LSDLEKM-------------------------------------------------KNVP 608
Query: 481 QPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTL 531
+P +S K A+ L LP+S YATMA+RELLKT TS + +TL
Sbjct: 609 EPPFAEWAAKESAHK--AVLLDFRLPTSTYATMALRELLKTDTSSSNQRTL 657
>gi|340905360|gb|EGS17728.1| pseudouridine synthase-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 1023
Score = 256 bits (653), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 165/468 (35%), Positives = 252/468 (53%), Gaps = 70/468 (14%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G +L F LYKENKDT +A+ I+++L + +FGFAGTKD+R+ + QR++V++Q+ L
Sbjct: 207 GDYLHFTLYKENKDTMDAVNTIARLLKVKASNFGFAGTKDRRAATVQRISVYRQKIKNLI 266
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRG-----------VVVDSEDVIKAS 137
LN R+ +++GDF Y KE L LGQ GN F I L+ ++ +I+ +
Sbjct: 267 WLNSRVPNVKVGDFEYCKEPLQLGQHGGNEFVIVLKNCHPVAAYGMDFTLIQRMKMIQQA 326
Query: 138 ANS----LGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL----------- 182
L R+G+INY+GLQRFG+ ++ TH +G +L+G+ + ++ IL
Sbjct: 327 VECGLAYLKRHGYINYYGLQRFGTHTIGTHYLGMKILKGDLEGFIEDILHVDEHLITEVL 386
Query: 183 -------------DPREGE-----RNEISKAR--EYYKETDDIDGTLRKLPRHLVAERAI 222
D REG R+E+++AR +K T + D L LP+ +E AI
Sbjct: 387 NSPNTPPPITANKDTREGREAQNNRDELNRARGITTWKLTKNADKALEFLPKRYSSECAI 446
Query: 223 LQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCK 282
++ L K P ++ A+ +I R LRMMY+H+YQS++WNH AS R K+G E V+ GDLV K
Sbjct: 447 IRHLGKAPKDFNGAVLSITRGLRMMYIHAYQSYVWNHVASYRWSKYG-ERVIEGDLVIIK 505
Query: 283 GDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTI 342
D+ L +S +D D + + D+ +G + + +T DI SGKYTI
Sbjct: 506 --DSLPAL--------RQSEDDEDYNPYEDQ-----EANGPYTQARALTLTDIASGKYTI 550
Query: 343 DDVVLPLPGSRVIYPMNDVAEVYHHL---AEKDGINLTESLHNVKEFSITSMTGNYRRVF 399
D+VLP PG V+YP ND+ E Y E G+N E +EF S++GNYR +
Sbjct: 551 FDIVLPTPGYDVLYPRNDIGEYYVEFMGRPENGGLNPYEMRRRQREF---SLSGNYRHLI 607
Query: 400 QKPM-DFEWELLTYIDGNKPLAETDLD-KIAKAKLVNIVKEEEAVCGN 445
+ + D ++ + Y + + L TDLD I K L+ K++ N
Sbjct: 608 GRFIKDPQYAVKAYNEDTEQLYPTDLDFAIHKKTLMAQKKKKAQASAN 655
>gi|449685795|ref|XP_002155579.2| PREDICTED: pseudouridylate synthase 7 homolog [Hydra
magnipapillata]
Length = 574
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 149/396 (37%), Positives = 205/396 (51%), Gaps = 44/396 (11%)
Query: 18 SRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRV 77
SR + WP+ L KF F L+K+NKDT E + L++K+L + F +AGTKD+R+ + Q++
Sbjct: 217 SRKNNTWPKNLPKFCHFTLFKQNKDTMECISLLAKLLHVNASCFSYAGTKDRRATTVQQI 276
Query: 78 TVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKAS 137
+ + L +NKRL I LGDF Y E L LG L GN FTI +R V D V +A
Sbjct: 277 SAQNIYSKNLLGVNKRLNNIVLGDFVYRNEQLKLGDLTGNEFTIIIRNVQADDASVNQA- 335
Query: 138 ANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPR--EGERNEISKA 195
N L NGF+NYFGLQRFG+G V TH +G LL+ + AV M+L PR + N S A
Sbjct: 336 CNLLKENGFVNYFGLQRFGTGGVATHEIGKALLKNNFSEAVDMVLMPRLNSNDYNAESNA 395
Query: 196 REYYKETDDIDGTLRKLPRHLVAERAILQCL--KKCPGNYLQALKAIPRTLRMMYVHSYQ 253
++ + ET D L E +L L +K N+ A + +PR R++Y+HSYQ
Sbjct: 396 KKIWTETKDAAKAFEALLSCYSIEGKLLAALNQQKHGYNFWNAWQTLPRNNRLLYLHSYQ 455
Query: 254 SFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDE 313
SF+WNH S R+ +G VVGDLV D N D S L
Sbjct: 456 SFIWNHVVSKRINMYGLS-PVVGDLVLTGKKD----------------QNGYDTSYEL-- 496
Query: 314 VPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDG 373
T DI S Y+I DVVLPLPG + YP N + +VY + DG
Sbjct: 497 -----------------TDKDIESLTYSIYDVVLPLPGYDMRYPSNGIRQVYEEMLVADG 539
Query: 374 INLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWEL 409
+++ + +KE S++G R + KP + EW +
Sbjct: 540 LDINNMRNKIKEL---SLSGKLRNIIAKPTNMEWRV 572
>gi|260946387|ref|XP_002617491.1| hypothetical protein CLUG_02935 [Clavispora lusitaniae ATCC 42720]
gi|238849345|gb|EEQ38809.1| hypothetical protein CLUG_02935 [Clavispora lusitaniae ATCC 42720]
Length = 699
Score = 255 bits (652), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 181/525 (34%), Positives = 258/525 (49%), Gaps = 84/525 (16%)
Query: 17 DSRGSENWPEQLGKF---LRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVS 73
D +G N+ LG F L F +YKENK+T E I+K L I ++ +AGTKD+R V+
Sbjct: 226 DEQGVINYG--LGPFKNYLHFTVYKENKETMEIASTITKFLRIPNKAVKYAGTKDRRGVT 283
Query: 74 TQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSED- 132
Q+ ++ K + +++ +LNK L G LG F Y L LG L GN F I +R V S D
Sbjct: 284 CQKFSIHKGKVARVTSLNKGLRGAILGGFSYEDRSLDLGDLQGNEFVIAIRDVRALSPDQ 343
Query: 133 ----VIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGE 188
VI S SL +NGFINY+GLQRFG+ S+ TH +G +L+ +WK A ++IL ++
Sbjct: 344 NIEAVIADSFQSLQKNGFINYYGLQRFGTFSISTHELGIIILKEDWKGAAELILAEQDRV 403
Query: 189 RNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKK--------CPGNYLQALKAI 240
+ +AR + ET D + +PR AE A+L L K Y +A+ I
Sbjct: 404 VPDSVEARRKWAETGDAAEAAKLMPRRCSAEHAVLNSLAKEKKGDDGYSKQAYFRAIMQI 463
Query: 241 PRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYE 300
PR LR++YVH+YQS++WN S R++ G E V GDLV + +E + + E
Sbjct: 464 PRNLRLIYVHAYQSYVWNLVVSKRMELFGLE-VQEGDLVMVEEKSSESNIVTEIVDGEVF 522
Query: 301 SSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMN- 359
+ + A P +D V+ +T DI SGKYTI DVVLP PG V+YP N
Sbjct: 523 AEDVAG--------PASDK-------VRALTKEDIESGKYTIFDVVLPSPGYDVVYPTNT 567
Query: 360 DVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPL 419
+ EVY KD ++ VKEF S+ G+YR V P +E++ Y + L
Sbjct: 568 QLMEVYEKAMAKDSLDPHNMGRRVKEF---SLAGSYRPVMGMPSGLSYEIVKYKEDTDAL 624
Query: 420 AETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEV 479
TDL+ +++E+EA A + V
Sbjct: 625 IRTDLE---------LLREKEATG-----------------------------AVLDRVV 646
Query: 480 KQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTS 524
K D + + A+ L + L S YATMA+RE +K TS
Sbjct: 647 KSE--------DPEANKTAVILQMRLGVSSYATMALREFMKADTS 683
>gi|330915269|ref|XP_003296964.1| hypothetical protein PTT_07218 [Pyrenophora teres f. teres 0-1]
gi|311330625|gb|EFQ94945.1| hypothetical protein PTT_07218 [Pyrenophora teres f. teres 0-1]
Length = 788
Score = 254 bits (650), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 182/553 (32%), Positives = 264/553 (47%), Gaps = 78/553 (14%)
Query: 19 RGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVT 78
RG +W E G++L F+LYKENKDT E +G + L + FGFAGTKD+R+ + QRV
Sbjct: 262 RGGLDWEELGGEYLHFNLYKENKDTMEVVGFLGSKLNCGTKGFGFAGTKDRRACTVQRVC 321
Query: 79 VFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLR--------GVVVD- 129
V +Q A ++ NK L +G+F Y L LG L+GN FTITLR G+ +
Sbjct: 322 VKRQTAQRMQNFNKMLFNACVGNFEYRHHDLRLGDLMGNEFTITLRDCHFQGEQGLTFEQ 381
Query: 130 ----SEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL--- 182
++DVI + + GFINY+GLQRFGS S T +G +L+ + + AV+ +L
Sbjct: 382 RLKLADDVIGKAIADFSQKGFINYYGLQRFGSFSASTDAIGRKMLQDDLQGAVEHLLAYS 441
Query: 183 ----------------DPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCL 226
+ +RN +KA +K L LPR AER I+Q L
Sbjct: 442 DVALAAANGTTCSPDVQVSQDDRNR-AKALHIWKTKGSGSEALDFLPRKFTAERNIIQHL 500
Query: 227 KK---------CPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGD 277
++ AL IPRTLR+MYVH+YQS +WN A R +G + VV GD
Sbjct: 501 SSRNSKSGRYDRKADWQGALMTIPRTLRLMYVHAYQSLVWNTVAGKRWALYG-DRVVEGD 559
Query: 278 LVFCKGDDTEKELGCV-NPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADIN 336
LV + +KEL N + + D + + + P+ + +TAA+
Sbjct: 560 LVLVN-EHRDKELSNTGNTKVDTTIDQDGEMIINPSGTENANAPEADFERARPLTAAEAA 618
Query: 337 SGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYR 396
S +YTI D+VLP PG V YP N++ Y + + +++ S++G YR
Sbjct: 619 SRQYTIWDIVLPQPGFDVEYPQNEIGTFYKEFMGSEKGGGLDPYKMRRQWREVSLSGGYR 678
Query: 397 RVFQKPMD-FEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKE-EEAVCGNKEKDPSDCM 454
+ KP+ + L Y ++ ETDL ++ K + V K EE GNK++D
Sbjct: 679 KFLAKPLGALTYALHDYTKPDEQFVETDLQRLGKGRDVGGKKAGEEGAGGNKDED----- 733
Query: 455 KQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMA 514
EN E K+ + Q K++A+ L L L SS YATMA
Sbjct: 734 --------------ENMEDGEEKD------------EEQAKKVAVVLKLQLASSQYATMA 767
Query: 515 IRELLKTSTSVAF 527
+REL+K A+
Sbjct: 768 LRELMKAGGVKAY 780
>gi|238483891|ref|XP_002373184.1| pseudouridine synthase TruD/Pus7, putative [Aspergillus flavus
NRRL3357]
gi|220701234|gb|EED57572.1| pseudouridine synthase TruD/Pus7, putative [Aspergillus flavus
NRRL3357]
gi|391874029|gb|EIT82984.1| pseudouridine synthase TruD/Pus7, putative [Aspergillus oryzae
3.042]
Length = 727
Score = 254 bits (649), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 190/553 (34%), Positives = 269/553 (48%), Gaps = 98/553 (17%)
Query: 4 NSKKRKERGDNPFD-SRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFG 62
N KRK +G ++G NW E G +L F +YKENKDT E + I++ L + P+SF
Sbjct: 224 NRTKRKAQGAREGGRNQGRVNWDELGGPYLHFTIYKENKDTMEVISFIARTLRLNPKSFQ 283
Query: 63 FAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTIT 122
FAGTKD+R V+TQR + A +LA LN L LGDF Y K GL LG L GN F IT
Sbjct: 284 FAGTKDRRGVTTQRACANRVHADRLAKLNSTLRNAALGDFEYRKHGLELGDLAGNEFVIT 343
Query: 123 LR-----GV-VVDSEDVIKASANSLG---RN----GFINYFGLQRFGSGSVPTHLVGATL 169
LR G+ + D E IK + S+G RN G+ NY+GLQRFG+ + T VG +
Sbjct: 344 LRECDIPGIDLQDRETAIKNATESVGSALRNLHERGYFNYYGLQRFGTFATRTDTVGVKM 403
Query: 170 LRGEWKSAVKMILD--------PREGERNEI-----SKAR----EYYKETDDIDGTLRKL 212
L+G+ K A IL ++GE + KAR ++ T I+ + KL
Sbjct: 404 LQGDLKGACDAILHYSPHVLAAAQDGENSTALISSDDKARAEAIHIFQTTGRINEAVEKL 463
Query: 213 PRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEH 272
PR AE +++ L + +YL AL+AIPR LR+MYVH+YQS +WN AA R + +G +
Sbjct: 464 PRKFSAEANLIRQLGRSKNDYLGALQAIPRNLRLMYVHAYQSLVWNFAAGERWRLYG-DK 522
Query: 273 VVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPET-DHPDGRHNL---VK 328
VV GDLV + +K+ P + D D + P+ D R + +
Sbjct: 523 VVEGDLVLIH-EHVDKDQTANGP------ATDVDADGEVIIAPQAEDSAYARSDAFVRAR 575
Query: 329 TVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSI 388
+TA + SGKYTI DVVLPLPG V+YP N + Y + + +++
Sbjct: 576 ALTAEEAASGKYTIFDVVLPLPGFDVLYPANAMDGFYKRFMGSEQGGGLDPYDMRRKWKD 635
Query: 389 TSMTGNYRRVFQK-PMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKE 447
S++G+YR++ + D+ E+ Y ++ +TDL+K+
Sbjct: 636 ISLSGSYRKLLSRMGADYSAEVKLYSGDDEQFVQTDLEKL-------------------- 675
Query: 448 KDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPS 507
N C +V ADS K +A+ L L S
Sbjct: 676 -----------------------NGKQC----------TVANADSADK-IAVVLKFQLGS 701
Query: 508 SCYATMAIRELLK 520
S YATMA+REL+K
Sbjct: 702 SQYATMALRELMK 714
>gi|391340786|ref|XP_003744717.1| PREDICTED: pseudouridylate synthase 7 homolog [Metaseiulus
occidentalis]
Length = 611
Score = 254 bits (649), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 172/513 (33%), Positives = 262/513 (51%), Gaps = 79/513 (15%)
Query: 24 WPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQR 83
WP F LYK+N DT EA+ I+ + P F +AGTKDKR+++TQRV+V++ +
Sbjct: 128 WPTGRPNHTTFVLYKDNTDTMEAINAIAGLTRTKPSVFSYAGTKDKRAITTQRVSVYRMK 187
Query: 84 ASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGR 143
L +NKR ++G+ + ++ + LG+L GNRF ITLR V +++ ++A+ +L R
Sbjct: 188 PDYLLGINKRNEKFKIGNVHFAQKQIQLGELTGNRFIITLRDVKGGTQEEMRAALENL-R 246
Query: 144 NGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL--DPREGERNEISKAREYYKE 201
GFINYFGLQRFG+ S+PTH +G +L +W A +IL R ++ AR +
Sbjct: 247 KGFINYFGLQRFGTTSIPTHDIGKKMLASKWAEACDLILRPRDGGRPRRDLDAARALWMG 306
Query: 202 TDDID---------GTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSY 252
T D G+ L HL+A LKK PGN+ AL + + R++Y+H+Y
Sbjct: 307 TKDASKCYDLLTTRGSQTSLEGHLLA------ALKKDPGNFQSALFGLQKNTRLLYIHAY 360
Query: 253 QSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLD 312
QSF+WN S R++ G + VV+GDLV
Sbjct: 361 QSFIWNSVVSRRLEMFGAK-VVLGDLV--------------------------------- 386
Query: 313 EVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKD 372
+P DG V+ VTA +I ++TI DVVLPLPG + YP N+ A + + + D
Sbjct: 387 -LPPDSKEDGDRAPVEYVTAENIT--RFTIWDVVLPLPGFSIKYPDNEQAGWFIDIVKSD 443
Query: 373 GI-NLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKA- 430
G NL N K F +M G YR+V+ P D ++E+ +Y + N+PL ETD D + K
Sbjct: 444 GFENLDCFSSNNKSF---AMRGTYRKVYCLPKDLDFEIKSYTNPNEPLVETDWDALLKKD 500
Query: 431 -KLVNI-VKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVC 488
KL + ++ + +EK+ + +K E + E K+P +
Sbjct: 501 EKLRELETRKIQVKQDRREKERAAQLKNGEEIY----------------ERKKPAPPADG 544
Query: 489 GADSQGKQMALKLGLTLPSSCYATMAIRELLKT 521
DS+ K + + L +LP++ YATM +RE L +
Sbjct: 545 KVDSEEK-IGVVLSFSLPAASYATMLLREFLSS 576
>gi|225561328|gb|EEH09608.1| pseudouridine synthase [Ajellomyces capsulatus G186AR]
Length = 765
Score = 254 bits (649), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 169/538 (31%), Positives = 269/538 (50%), Gaps = 76/538 (14%)
Query: 19 RGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVT 78
RG W E G+ L F +YKENKDT E + +++ + + + FGFAGTKD+R V+ QR +
Sbjct: 256 RGKLGWSELGGEHLHFTIYKENKDTMEVVTFLARQMKMNAKQFGFAGTKDRRGVTVQRAS 315
Query: 79 VFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGV------------ 126
V++ A +L + K L +GDF Y + L LG L GN F ITLR
Sbjct: 316 VYRVYADRLLNVGKSLRNAAVGDFEYRTDRLELGDLNGNEFVITLRDCQFPFGQNEERLT 375
Query: 127 --VVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDP 184
V + +++ + + L G++NY+GLQRFG+ S T VG +L+G++K A + IL
Sbjct: 376 NGVSKATEIVSQALHDLRERGYLNYYGLQRFGTFSTRTDTVGLKMLQGDFKGACECILHF 435
Query: 185 REG------------------ERNEISKAR--EYYKETDDIDGTLRKLPRHLVAERAILQ 224
G ++I++A ++ T + KLPR AE +I++
Sbjct: 436 NPGTLTQTQSQAQSQETKTLISADDIARAEAIHIFQTTGRCNEAANKLPRKFSAESSIIR 495
Query: 225 CLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGD 284
L + +Y AL IPR+LR+MYVH+YQS +WN A+S R + +G + VV GDLV
Sbjct: 496 HLGRNKNDYFGALGTIPRSLRLMYVHAYQSLVWNFASSQRWRLYG-DKVVAGDLVLINDF 554
Query: 285 DTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDD 344
LG E+++ D D D + PD + +TA + SGKYTI D
Sbjct: 555 KESDGLGAAAAVDEFDA--DGDVVVLPDAGDSANAPDEMFERARALTAEEAASGKYTIFD 612
Query: 345 VVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKP-M 403
+VLPLPG ++YP N++ Y D + + + S++G YR++ KP
Sbjct: 613 IVLPLPGFDILYPDNEMKAFYKDFMSSDRGGKLDPFDMRRSWKDISLSGGYRKLLSKPGA 672
Query: 404 DFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKD 463
++ +E+ Y + ++ +TDLDK+ ++K EK ++ E ++++
Sbjct: 673 EYSFEVKAYANDDEQFVQTDLDKLKESK------------NGHEK-----ARRPEKVTEE 715
Query: 464 IKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKT 521
+ + + ++AA K +A+ + L L SS YATMA+REL+K+
Sbjct: 716 V--TGQVDKAAADK-------------------LAVIIKLQLGSSQYATMALRELMKS 752
>gi|58270732|ref|XP_572522.1| pseudouridine synthase [Cryptococcus neoformans var. neoformans
JEC21]
gi|134115983|ref|XP_773378.1| hypothetical protein CNBI3170 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256002|gb|EAL18731.1| hypothetical protein CNBI3170 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57228780|gb|AAW45215.1| pseudouridine synthase, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 863
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 158/440 (35%), Positives = 237/440 (53%), Gaps = 41/440 (9%)
Query: 12 GDNPFDSRGSENWPE--QLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDK 69
G + F +G+ P+ +L ++ F L+K N++T +AL + ++L + + GTKDK
Sbjct: 357 GQSSFHGKGARRAPDAPRLPAYIHFTLHKSNRETMDALSHLQRLLNVQAKDLTVCGTKDK 416
Query: 70 RSVSTQRV----------TVFKQ--------RASKLAALNKRLIGIRLGDFCYVKEGLLL 111
R+V+ QRV TV++ R + A + G+R+GDF Y + L L
Sbjct: 417 RAVTVQRVCLKRSGRNLQTVWRALNGVKQGWRTEQQAVEERGDRGVRVGDFEYSDKYLEL 476
Query: 112 GQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLR 171
G L GNRF ITLR V +S + I + S+ GFIN++G+QRFG+ S+PTH+ G +LR
Sbjct: 477 GMLKGNRFLITLRNVEAESVEEIDRTMESVRDLGFINFYGMQRFGTSSMPTHVTGLFILR 536
Query: 172 GEWKSAVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPG 231
W +A+ +L REGE + AR + E D L K+PR VAER+I + K+ G
Sbjct: 537 SNWSAALDSLLFLREGEHPDCVAARLAWLEDGDYVKALEKMPRRAVAERSIWEFWKR--G 594
Query: 232 NYLQ----ALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTE 287
++ AL IPR LR MYVH+YQS++WN S R++ TE +VGDLV K DD E
Sbjct: 595 GRMEDKVGALGVIPRNLRTMYVHAYQSYVWNLIVSERIKMSATEP-LVGDLVIEKSDDDE 653
Query: 288 KELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVL 347
V+P E ++ D + P V+ +TA DI + +TI DVV+
Sbjct: 654 P----VDP--ENVPAHRKDRHGRTKSWKTSSSP-----TVRRLTAEDITNKTHTIFDVVM 702
Query: 348 PLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEW 407
PLPG V YP +V E+Y + + DG++ +E+ S+ G+YR + +P+ W
Sbjct: 703 PLPGFDVDYPGGEVGELYDSILKADGLDKDRMRREQREY---SLPGSYRLILLRPLSLTW 759
Query: 408 ELLTYIDGNKPLAETDLDKI 427
L Y D + PL ++D D+I
Sbjct: 760 THLQYTDPDLPLVQSDEDEI 779
>gi|321263181|ref|XP_003196309.1| pseudouridine synthase [Cryptococcus gattii WM276]
gi|317462784|gb|ADV24522.1| pseudouridine synthase, putative [Cryptococcus gattii WM276]
Length = 862
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 154/423 (36%), Positives = 230/423 (54%), Gaps = 39/423 (9%)
Query: 27 QLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRV--------- 77
+L ++ F L+K N++T +AL + ++LG+ + GTKDKR+V+ QRV
Sbjct: 374 RLPAYIHFTLHKSNRETMDALSHLQRLLGVQAKDLTVCGTKDKRAVTVQRVCLKRSGRNL 433
Query: 78 -TVFKQ--------RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVV 128
TV++ R + A + G+R+GDF Y + L LG L GNRF ITLR V
Sbjct: 434 QTVWRALNGVKQGWRTEQQAVEERGDRGVRVGDFEYSDKYLELGMLKGNRFLITLRNVEA 493
Query: 129 DSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGE 188
DS + I + S+ GFIN++G+QRFG+ S+PTH+ G +LR W +A+ +L REGE
Sbjct: 494 DSVEEIDQTMESVRDLGFINFYGMQRFGTSSMPTHVTGLFILRSNWSAALDSLLSLREGE 553
Query: 189 RNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQ----ALKAIPRTL 244
+ AR + E D L K+PR VAER+I + K+ G ++ AL IPR L
Sbjct: 554 HPDCVAARLAWLEDGDYVKALEKMPRRAVAERSIWEFWKR--GGRMEDKVGALGVIPRNL 611
Query: 245 RMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSND 304
R MYVH+YQS++WN S R++ TE +VGDLV K DD E ++P E ++
Sbjct: 612 RTMYVHAYQSYVWNLIVSERIKMSSTEP-LVGDLVIEKSDDNEP----IDP--ENVPAHR 664
Query: 305 ADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEV 364
D + P V+ +TA DI + +TI +VV+PLPG V YP +V E+
Sbjct: 665 KDRHGRTKSWKTSSSP-----TVRRLTAEDIANKTHTIFNVVMPLPGFDVDYPGGEVGEL 719
Query: 365 YHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDL 424
Y + + DG++ +E+ S+ G+YR + +P+ W L Y D + PL ++D
Sbjct: 720 YDRILKADGLDKDRMRREQREY---SLPGSYRLILLRPLSLTWTHLQYTDPDLPLVQSDE 776
Query: 425 DKI 427
D+I
Sbjct: 777 DEI 779
>gi|440639093|gb|ELR09012.1| hypothetical protein GMDG_00630 [Geomyces destructans 20631-21]
Length = 899
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 156/451 (34%), Positives = 243/451 (53%), Gaps = 51/451 (11%)
Query: 19 RGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVT 78
+G W E G+ L+F L KENKDT E + IS LG+ PRSF FAGTKD+R V+ QRV+
Sbjct: 289 KGKLGWAELGGEHLQFSLLKENKDTMEVISFISSRLGMKPRSFAFAGTKDRRGVTVQRVS 348
Query: 79 VFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLR-------------G 125
VF++ A +++ LN+ + G ++GDF Y K L LG L GN F ITLR G
Sbjct: 349 VFRKNAEQISHLNRDMWGSKIGDFTYEKHALELGDLTGNEFHITLRDCQFPGADNLDDEG 408
Query: 126 VVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL--- 182
+ + V+ + S+ +GF+NY+GLQRFG+ + T +G +L+ ++K AV IL
Sbjct: 409 KLALANKVVGGAVESIQSHGFLNYYGLQRFGTYLIGTDEIGKLILKNDYKGAVDAILSYS 468
Query: 183 ---------------DPREGERNEISKAR--EYYKETDDIDGTLRKLPRHLVAERAILQC 225
D + R++I++A+ + +K T L KLPR AE I++
Sbjct: 469 PECLSAGQDPDFVTSDGKPLSRDDIARAKAIDIFKATGRAKEALDKLPRKFSAESTIIRH 528
Query: 226 LKKC--PGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKG 283
L++ +Y+ A+ I R LR+MYVH+YQS +WNHA S R + G + VV GDLV +
Sbjct: 529 LERGDRKTDYMGAILQINRNLRLMYVHAYQSLVWNHAVSERWAQSG-DKVVEGDLVLVEA 587
Query: 284 DDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTID 343
+ + E+ ++ E ADD++ D + ++A + SGK++I
Sbjct: 588 NADKPEVEELDQNGEVVVLPAADDTAV--------STDNMFQRARPLSADEAVSGKFSIF 639
Query: 344 DVVLPLPGSRVIYPMNDVAEVYHHLAEKD---GINLTESLHNVKEFSITSMTGNYRRVFQ 400
D+VLP PG + YP+N + + Y + G++ K+F S++G+YR++
Sbjct: 640 DIVLPTPGYDIEYPLNAIGDFYKTFMGSERGGGLDPANMRRAQKDF---SLSGSYRKIMG 696
Query: 401 K-PMDFEWELLTYIDGNKPLAETDLDKIAKA 430
D +E+ Y + N+ + ETDLD+I K+
Sbjct: 697 TVGNDVTYEVKAYTEDNEQMVETDLDRINKS 727
>gi|154282385|ref|XP_001541988.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150410168|gb|EDN05556.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 726
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 169/542 (31%), Positives = 265/542 (48%), Gaps = 88/542 (16%)
Query: 19 RGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVT 78
RG W E G+ L F +YKENKDT E + +++ + + + FGFAGTKD+R V+ QR +
Sbjct: 217 RGKLGWSELGGEHLHFTIYKENKDTMEVVTFLARQMKMNAKQFGFAGTKDRRGVTVQRAS 276
Query: 79 VFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGV------------ 126
V++ A +L + K L +GDF Y + L LG L GN F ITLR
Sbjct: 277 VYRVYADRLLNVGKSLRNAAVGDFEYRTDRLELGDLNGNEFVITLRDCQFPFGQNEEMLT 336
Query: 127 --VVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDP 184
V + +++ + + L G++NY+GLQRFG+ S T VG +L+G++K A + IL
Sbjct: 337 NGVSKATEIVSQALHDLRERGYLNYYGLQRFGTFSTRTDTVGLKMLQGDFKGACECILHF 396
Query: 185 REG------------------ERNEISKAR--EYYKETDDIDGTLRKLPRHLVAERAILQ 224
G ++I++A ++ T + KLPR AE +I++
Sbjct: 397 NPGTLAQTQSQAQSQETKTLISADDIARAEAIHIFQTTGRCNEAANKLPRKFSAESSIIR 456
Query: 225 CLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGD 284
L + +Y AL IPR+LR+MYVH+YQS +WN AAS R Q +G + VV GDLV
Sbjct: 457 HLGRNKNDYFGALGTIPRSLRLMYVHAYQSLVWNFAASQRWQLYG-DKVVAGDLVLVNDF 515
Query: 285 DTEKELGCVNPEFEYESSND------ADDSSHLDEVPETDHPDGRHNLVKTVTAADINSG 338
G E+++ D A DS++ PD + +TA + SG
Sbjct: 516 KESDGPGAAAAVDEFDADGDVVVLPEAGDSANA--------PDEMFERARALTAEEAASG 567
Query: 339 KYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRV 398
KYTI D+VLPLPG ++YP N++ Y D + + + S++G YR++
Sbjct: 568 KYTIFDIVLPLPGFDILYPDNEMTAFYKDFMSSDRGGKLDPFDMRRSWKDISLSGGYRKL 627
Query: 399 FQKP-MDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQS 457
KP ++ +E+ Y + ++ +TDLDK+ ++K EK ++
Sbjct: 628 LSKPGAEYSFEVKAYANDDEQFVQTDLDKLKESK------------NGHEK-----ARRP 670
Query: 458 ESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRE 517
E +++++ +N A ++A+ + L L SS YATMA+RE
Sbjct: 671 EKVTEEVTGQVDNAAA---------------------DKLAVIIKLQLGSSQYATMALRE 709
Query: 518 LL 519
L+
Sbjct: 710 LM 711
>gi|367050886|ref|XP_003655822.1| hypothetical protein THITE_2119958 [Thielavia terrestris NRRL 8126]
gi|347003086|gb|AEO69486.1| hypothetical protein THITE_2119958 [Thielavia terrestris NRRL 8126]
Length = 1051
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 161/455 (35%), Positives = 241/455 (52%), Gaps = 61/455 (13%)
Query: 11 RGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKR 70
R DN + ++ E G++L F LYKENKDT +A+ I+++L I +FGFAGTKD+R
Sbjct: 223 RRDNSHYRDQARDFSELGGEYLHFTLYKENKDTMDAVNTIARLLKIKASNFGFAGTKDRR 282
Query: 71 SVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGV---- 126
+ + QR++V++QR S L LN R+ +++GDF Y E L LGQ GN F ITL+
Sbjct: 283 ASTVQRISVYRQRISNLVWLNSRISNVKVGDFEYSPEPLQLGQHGGNEFVITLKNCMPLG 342
Query: 127 -----VVDSEDVIKASANS----LGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSA 177
+V +I+ + L +G+INY+GLQRFG+ ++ THL+G +L+G+++
Sbjct: 343 GSNCSIVQRMKMIQQAVECGLAYLKHHGYINYYGLQRFGTHAIGTHLLGMKILQGDYEGV 402
Query: 178 VKMILDPRE---------------------GERNEISKAR--EYYKETDDIDGTLRKLPR 214
+ IL E R+E ++AR +K T + L LP+
Sbjct: 403 IDDILHVEEDLIKEVLSNATQPSGPGKDSQNSRDEHNRARGITTWKATKNAAQALEFLPK 462
Query: 215 HLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVV 274
+E AI++ L K P ++ A+ +I R +RMMYVH+YQS++WN A+ R K+G + V+
Sbjct: 463 RYSSETAIIRHLGKNPKDFTGAVLSITRGMRMMYVHAYQSYVWNFVATRRWSKYGAK-VI 521
Query: 275 VGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAAD 334
GDLV G T + + EF ND D+ + +TAA+
Sbjct: 522 EGDLVLVGG--TRRRESQSDDEFNPYDDNDEDNI---------------YAQAHALTAAE 564
Query: 335 INSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHL---AEKDGINLTESLHNVKEFSITSM 391
+ SGKYTI DVVLP PG V YP ND+ E Y E +N E +EF S+
Sbjct: 565 VASGKYTIFDVVLPTPGYDVTYPRNDIGEYYVEFMGKPENGALNPYEMRRKQREF---SL 621
Query: 392 TGNYRRVFQKPM-DFEWELLTYIDGNKPLAETDLD 425
+GNYR + + + D ++ + Y D + L TDLD
Sbjct: 622 SGNYRPLLGRLIGDPQYAIRAYHDDTQQLYPTDLD 656
>gi|169767068|ref|XP_001818005.1| pseudouridine synthase TruD/Pus7 [Aspergillus oryzae RIB40]
gi|83765860|dbj|BAE56003.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 727
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 188/553 (33%), Positives = 268/553 (48%), Gaps = 98/553 (17%)
Query: 4 NSKKRKERGDNPFD-SRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFG 62
N KRK +G ++G NW E G +L F +YKENKDT E + I++ L + P+SF
Sbjct: 224 NRTKRKAQGAREGGRNQGRVNWDELGGPYLHFTIYKENKDTMEVISFIARTLRLNPKSFQ 283
Query: 63 FAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTIT 122
FAGTKD+R V+TQR + A +LA LN L LGDF Y K GL LG L GN F IT
Sbjct: 284 FAGTKDRRGVTTQRACANRVHADRLAKLNSTLRNAALGDFEYRKHGLELGDLAGNEFVIT 343
Query: 123 LR-----GV-VVDSEDVIKASANSLG---RN----GFINYFGLQRFGSGSVPTHLVGATL 169
LR G+ + D E +K + S+G RN G+ NY+GLQRFG+ + T VG +
Sbjct: 344 LRECDIPGIDLQDRETAVKNATESVGSALRNLHERGYFNYYGLQRFGTFATRTDTVGVKM 403
Query: 170 LRGEWKSAVKMILD--------PREGERNEI-----SKAR----EYYKETDDIDGTLRKL 212
L+G+ K A IL ++GE + KAR ++ T I+ + KL
Sbjct: 404 LQGDLKGACDAILHYSPHVLAAAQDGENSTALISSDDKARAEAIHIFQTTGRINEAVEKL 463
Query: 213 PRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEH 272
PR AE +++ L + +YL AL+AIPR LR+MYVH+YQS +WN AA R + +G +
Sbjct: 464 PRKFSAEANLIRQLGRSKNDYLGALQAIPRNLRLMYVHAYQSLVWNFAAGERWRLYG-DK 522
Query: 273 VVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPET-DHPDGRHNL---VK 328
VV GDLV + +K+ P + D D + P+ D R + +
Sbjct: 523 VVEGDLVLIH-EHVDKDQTANGP------ATDVDADGEVIIAPQAEDSAYARSDAFVRAR 575
Query: 329 TVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSI 388
+TA + SGKYTI DVVLPLPG V+YP N + Y + + +++
Sbjct: 576 ALTAEEAASGKYTIFDVVLPLPGFDVLYPANAMDGFYKRFMGSEQGGGLDPYDMRRKWKD 635
Query: 389 TSMTGNYRRVFQK-PMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKE 447
S++G+YR++ + D+ E+ Y ++ +TDL+K+
Sbjct: 636 ISLSGSYRKLLSRMGADYSAEVKLYSGDDEQFVQTDLEKL-------------------- 675
Query: 448 KDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPS 507
N C + ADS K +A+ L L S
Sbjct: 676 -----------------------NGKQC----------TAANADSADK-IAVVLKFQLGS 701
Query: 508 SCYATMAIRELLK 520
S YATMA+REL+K
Sbjct: 702 SQYATMALRELMK 714
>gi|296803442|ref|XP_002842574.1| pseudouridine synthase [Arthroderma otae CBS 113480]
gi|238838893|gb|EEQ28555.1| pseudouridine synthase [Arthroderma otae CBS 113480]
Length = 737
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 178/562 (31%), Positives = 275/562 (48%), Gaps = 94/562 (16%)
Query: 3 RNSKKRKERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFG 62
R + + + R D RG W E G +L F LYKENKDT E + +S+ L + P++F
Sbjct: 215 RQAGRDQGRVDAARLPRGKLGWSELGGDYLHFTLYKENKDTMEVISFLSRQLKVAPKAFQ 274
Query: 63 FAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTIT 122
FAGTKD+R + QRV+VF+ ++A LN L +GD+ Y K+GL LGQL GN F +T
Sbjct: 275 FAGTKDRRGATAQRVSVFRIYPDRMANLNGSLRMAAIGDYAYQKQGLELGQLNGNEFVVT 334
Query: 123 LR------GVV-----------VDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLV 165
LR GVV + ++++ S SL G+ NY+GLQRFG+ + T
Sbjct: 335 LRDCQFAEGVVGEGGPSSPETLANVTELVRKSLRSLRERGYFNYYGLQRFGTFATRTDTT 394
Query: 166 GATLLRGEWKSAVKMIL------------DPREGERNE----------ISKAREYYKETD 203
G +LRG++K A + IL D ER + +KA ++ T
Sbjct: 395 GLRMLRGQFKEACESILHYSEAALAAAAQDVSSEERTQRPLISTDDILRAKAIHIFQTTG 454
Query: 204 DIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASA 263
+ L LPR AE I++ L + +Y AL++IPR LR+MYVH+YQS +WN AA
Sbjct: 455 NGRDALDILPRKFTAESNIIRLLCQRKNDYFGALQSIPRNLRLMYVHAYQSLVWNFAAGE 514
Query: 264 RVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGR 323
R + +G + VV GDLV E + ++ DAD + +P+ D
Sbjct: 515 RWRLYG-DKVVEGDLVLVNDFKDETKAAA-------QAEVDADGEEIV--LPDADDSAAV 564
Query: 324 HNL---VKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESL 380
++ + ++A + SGKY+I D+VLPLPG ++YP N++ Y D +
Sbjct: 565 DDMFERARALSAEEAASGKYSIFDIVLPLPGFDILYPANEMTNFYKEFMGSDKGGNLDPF 624
Query: 381 HNVKEFSITSMTGNYRRVFQKP-MDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEE 439
+ + S++G+YR++ +P D+ +E+ Y ++ +TDL+++ ++K
Sbjct: 625 DMRRSWRDISLSGSYRKILSRPGADYSFEVRPYRVEDEQFVKTDLERLKESKT------- 677
Query: 440 EAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMAL 499
+ KD + A E QP DS +++A+
Sbjct: 678 -----GEHKD---------------------DNYAPTSEASQP-------LDSP-ERLAV 703
Query: 500 KLGLTLPSSCYATMAIRELLKT 521
L L +S YATMA+REL+KT
Sbjct: 704 ILKFQLGASQYATMALRELMKT 725
>gi|425775558|gb|EKV13819.1| Pseudouridine synthase TruD/Pus7, putative [Penicillium digitatum
PHI26]
gi|425783698|gb|EKV21528.1| Pseudouridine synthase TruD/Pus7, putative [Penicillium digitatum
Pd1]
Length = 735
Score = 251 bits (641), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 170/532 (31%), Positives = 259/532 (48%), Gaps = 93/532 (17%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
NW E G +L F +YKENKDT E +G I++ + + P+S FAGTKD+R V+ QR +
Sbjct: 245 NWEELGGPYLHFTIYKENKDTMEVIGYIARSMKMNPKSLQFAGTKDRRGVTVQRACAVRV 304
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGV-------------VVD 129
+ +LA +N L +GDF Y K+GL LG L GN F ITLR V +
Sbjct: 305 QVDRLAQVNSELRNAYIGDFEYRKQGLELGDLQGNEFVITLRDVEIPGVSLSDPKAAISK 364
Query: 130 SEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILD--PREG 187
+ +V+ AS +L R G+ NY+GLQRFG+ + T +VG +L+G++K A IL P
Sbjct: 365 ASEVVGASLKNLYRRGYFNYYGLQRFGTFATRTDIVGVKMLQGDFKGACDAILQYAPESL 424
Query: 188 ERNEISKAREYYKETDDID---------------GTLRKLPRHLVAERAILQCLKKCPGN 232
+ K TDD D L+K+PR AE +++ L + +
Sbjct: 425 QAAMEGKMSTANIGTDDKDRAMAINIFQTGGSVTDALQKIPRKFSAENNLIRHLGRNSKD 484
Query: 233 YLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGC 292
YL AL++IPR LR+MYVH+YQS +WN AAS R + +G + VV GDLV + ++
Sbjct: 485 YLGALQSIPRNLRLMYVHAYQSLVWNFAASERWRLYG-DRVVEGDLVIIQEHRDKESAST 543
Query: 293 VNPEFEYESSNDADDSSHLDEVPETDHP----DGRHNLVKTVTAADINSGKYTIDDVVLP 348
V E+ D + VP+ + + + +TA + SGKYTI D+VLP
Sbjct: 544 V------EAPETVDADGEIIVVPQGEDSAVAVEDMFMRARALTAEEAASGKYTIFDLVLP 597
Query: 349 LPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPM--DFE 406
PG +IYP N++ E Y E + + + +++ S++G YR++F + + +
Sbjct: 598 QPGYDIIYPENEMKEFYRRFMESEQGGRLDPSNMRRKWKDISLSGGYRKIFSRMIGDKYS 657
Query: 407 WELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKL 466
+++ Y ++ +T+L K+ QSE + D +
Sbjct: 658 FDVKLYAKDDQQFVKTELQKL----------------------------QSEDENADTTM 689
Query: 467 STENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIREL 518
+ E AD ++A+ L L SS YATMA+REL
Sbjct: 690 TDE------------------TAAD----KLAVVLKFQLGSSQYATMALREL 719
>gi|240274430|gb|EER37946.1| pseudouridine synthase [Ajellomyces capsulatus H143]
Length = 765
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 168/537 (31%), Positives = 266/537 (49%), Gaps = 76/537 (14%)
Query: 19 RGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVT 78
RG W E G+ L F +YKENKDT E + +++ + + + FGFAGTKD+R V+ QR +
Sbjct: 256 RGKLGWSELGGEHLHFTIYKENKDTMEVVTFLARQMKMNAKQFGFAGTKDRRGVTVQRAS 315
Query: 79 VFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGV------------ 126
V++ A +L + K L +GDF Y + L LG L GN F ITLR
Sbjct: 316 VYRVYADRLLNVEKSLRNAAVGDFEYRTDRLELGDLNGNEFVITLRDCQFPFGQNEERLT 375
Query: 127 --VVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDP 184
V + +++ + + L G++NY+GLQRFG+ S T VG +L+G++K A + IL
Sbjct: 376 DGVSKATEIVSQALHDLRERGYLNYYGLQRFGTFSTRTDTVGLKMLQGDFKGACECILHF 435
Query: 185 REG------------------ERNEISKAR--EYYKETDDIDGTLRKLPRHLVAERAILQ 224
G ++I++A ++ T + KLPR AE +I++
Sbjct: 436 NPGTLTQTQSQAQSQETKTLISADDIARAEAIHIFQTTGRCNEAANKLPRKFSAESSIIR 495
Query: 225 CLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGD 284
L + +Y AL IPR+LR+MYVH+YQS +WN AS R + +G + VV GDLV
Sbjct: 496 HLGRNKNDYFGALGTIPRSLRLMYVHAYQSLVWNFTASQRWRLYG-DKVVAGDLVLINDF 554
Query: 285 DTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDD 344
G E+++ D D D + PD + +TA + SGKYTI D
Sbjct: 555 KESDGPGVAAAVDEFDA--DGDVVVLPDAGDSANAPDEMFERARALTAEEAASGKYTIFD 612
Query: 345 VVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKP-M 403
+VLPLPG ++YP N++ Y D + + + S++G YR++ KP
Sbjct: 613 IVLPLPGFDILYPDNEMKAFYKDFMSSDRGGKLDPFDMRRSWKDISLSGGYRKLLSKPGA 672
Query: 404 DFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKD 463
++ +E+ Y + ++ +TDLDK+ ++K EK ++ E ++++
Sbjct: 673 EYSFEVKAYANDDEQFVQTDLDKLKESK------------NGHEK-----ARRPEKVTEE 715
Query: 464 IKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLK 520
+ + + ++AA K +A+ + L L SS YATMA+REL+K
Sbjct: 716 V--TGQVDKAAADK-------------------LAVIIKLQLGSSQYATMALRELMK 751
>gi|325090770|gb|EGC44080.1| pseudouridine synthase [Ajellomyces capsulatus H88]
Length = 765
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 168/537 (31%), Positives = 266/537 (49%), Gaps = 76/537 (14%)
Query: 19 RGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVT 78
RG W E G+ L F +YKENKDT E + +++ + + + FGFAGTKD+R V+ QR +
Sbjct: 256 RGKLGWSELGGEHLHFTIYKENKDTMEVVTFLARQMKMNAKQFGFAGTKDRRGVTVQRAS 315
Query: 79 VFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGV------------ 126
V++ A +L + K L +GDF Y + L LG L GN F ITLR
Sbjct: 316 VYRVYADRLLNVGKSLRNAAVGDFEYRTDRLELGDLNGNEFVITLRDCQFPFGQNEERLT 375
Query: 127 --VVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDP 184
V + +++ + + L G++NY+GLQRFG+ S T VG +L+G++K A + IL
Sbjct: 376 DGVSKATEIVSQALHDLRERGYLNYYGLQRFGTFSTRTDTVGLKMLQGDFKGACECILHF 435
Query: 185 REG------------------ERNEISKAR--EYYKETDDIDGTLRKLPRHLVAERAILQ 224
G ++I++A ++ T + KLPR AE +I++
Sbjct: 436 NPGTLTQTQSQAQSQETKTLISADDIARAEAIHIFQTTGRCNEAANKLPRKFSAESSIIR 495
Query: 225 CLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGD 284
L + +Y AL IPR+LR+MYVH+YQS +WN AS R + +G + VV GDLV
Sbjct: 496 HLGRNKNDYFGALGTIPRSLRLMYVHAYQSLVWNFTASQRWRLYG-DKVVAGDLVLINDF 554
Query: 285 DTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDD 344
G E+++ D D D + PD + +TA + SGKYTI D
Sbjct: 555 KESDGPGVAAAVDEFDA--DGDVVVLPDAGDSANAPDEMFERARALTAEEAASGKYTIFD 612
Query: 345 VVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKP-M 403
+VLPLPG ++YP N++ Y D + + + S++G YR++ KP
Sbjct: 613 IVLPLPGFDILYPDNEMKAFYKDFMSSDRGGKLDPFDMRRSWKDISLSGGYRKLLSKPGA 672
Query: 404 DFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKD 463
++ +E+ Y + ++ +TDLDK+ ++K EK ++ E ++++
Sbjct: 673 EYSFEVKAYANDDEQFVQTDLDKLKESK------------NGHEK-----ARRPEKVTEE 715
Query: 464 IKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLK 520
+ + + ++AA K +A+ + L L SS YATMA+REL+K
Sbjct: 716 V--TGQVDKAAADK-------------------LAVIIKLQLGSSQYATMALRELMK 751
>gi|380485447|emb|CCF39354.1| tRNA pseudouridine synthase D [Colletotrichum higginsianum]
Length = 780
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 178/546 (32%), Positives = 274/546 (50%), Gaps = 94/546 (17%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G++L F +YKEN+DT +AL ISK L P++ G AGTKD+R+ +TQR ++ QRA L
Sbjct: 230 GEYLHFTMYKENRDTMDALHQISKALRTKPQAIGTAGTKDRRAATTQRCSIRGQRADAL- 288
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDS-------------EDVIK 135
+ RL G+ +GD+ Y + LG GN F I L+ +V D +K
Sbjct: 289 -VRARLNGVTVGDYLYAPTPIHLGAHAGNEFVIALKDCLVAGSPDLSPADRHAQIHDSVK 347
Query: 136 ASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPRE--------G 187
A+ S+ G+INYFG QRFG+ +V TH VG +L+ +++SAV IL E G
Sbjct: 348 AAMASMRSLGWINYFGHQRFGTHAVGTHEVGRLILQEDFESAVNAILAYDEAIAKRAAAG 407
Query: 188 ERNEISKARE---------YYKETDDIDGTLRKLPRHLVAERAILQCLKKCPG----NYL 234
E E + AR+ ++E + L+ LPR AE ++++ L G ++
Sbjct: 408 EXPEQAHARDDFSRHHACMLFREGGSAEEALKHLPRCFSAESSLIRHLGMSSGPSRRDFT 467
Query: 235 QALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVN 294
AL +I R LR MY+H+YQS++WNHAAS R + +G E VV GDLVF G +
Sbjct: 468 GALTSITRGLRSMYLHAYQSYVWNHAASHRWRLYG-EKVVEGDLVFADGSKPQAN----- 521
Query: 295 PEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRV 354
+ E++ D DD+ D P +TA + SGKYTI D+VLP PG V
Sbjct: 522 ---DAETTQDDDDAEFSDARP--------------LTAEEAASGKYTIHDIVLPSPGHAV 564
Query: 355 IYPMNDVAEVY-HHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPM-DFEWELLTY 412
+YP N V E Y + + G++ T+ + +EF S+ G+YR+V + + + +E+ Y
Sbjct: 565 VYPTNAVGEFYTTFMRDNGGLDPTKMIRRQREF---SLRGDYRKVVVRFLAEPGFEVRAY 621
Query: 413 IDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNE 472
D N+ + TD+D+I A+ G +K D + + +K K T+ E
Sbjct: 622 EDDNEQMHPTDMDRIRAAR-----------SGAGKKRARDEAEGQDGDNKKAKTETQGGE 670
Query: 473 AACAKEVKQ-PHVE------------------SVCGADSQGKQMALKLGLTLPSSCYATM 513
++++ P E + ++ + A+ + LP S YAT+
Sbjct: 671 TMGDEKMEDAPQTEEEKPAAGAEAKAEDAAAAAGSKPTAEKTKTAVVVRFQLPKSAYATV 730
Query: 514 AIRELL 519
A+REL+
Sbjct: 731 ALRELM 736
>gi|405119756|gb|AFR94528.1| pseudouridine synthase [Cryptococcus neoformans var. grubii H99]
Length = 865
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 155/436 (35%), Positives = 234/436 (53%), Gaps = 41/436 (9%)
Query: 16 FDSRGSENWPE--QLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVS 73
F +G+ P+ +L ++ F L+K N++T +AL + ++L + + GTKDKR+V+
Sbjct: 364 FHGKGARRAPDAPRLPAYIHFTLHKSNRETMDALSHLQRLLNVQAKDLTVCGTKDKRAVT 423
Query: 74 TQRV----------TVFKQ--------RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLL 115
QRV TV++ R + A + G+R+GDF Y + L LG L
Sbjct: 424 VQRVCLKRSGRNLQTVWRALNGVKQGWRTEQQAVEERGDRGVRVGDFEYSDKYLELGMLK 483
Query: 116 GNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWK 175
GNRF ITLR V ++ + I + S+ GFIN++G+QRFG+ S+PTH+ G +LR W
Sbjct: 484 GNRFLITLRNVEAENVEEIDRTMESVRDLGFINFYGMQRFGTSSMPTHVTGLFILRSNWS 543
Query: 176 SAVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQ 235
+A+ +L REGE + AR + E D L K+PR VAER+I + K+ G ++
Sbjct: 544 AALDSLLSLREGEHPDCVAARLSWLEDGDYVKALEKMPRRAVAERSIWEFWKR--GGRME 601
Query: 236 ----ALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELG 291
AL IPR LR MYVH+YQS++WN S R++ TE VGDLV K DD E
Sbjct: 602 DKVGALGVIPRNLRTMYVHAYQSYVWNLIVSERIKMSATEP-FVGDLVIEKSDDDEP--- 657
Query: 292 CVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPG 351
++P E ++ D + P V+ +TA DI + +TI DVV+PLPG
Sbjct: 658 -IDP--ENVPAHRKDRHGRTKSWKTSSSP-----TVRRLTAEDITNKTHTIFDVVMPLPG 709
Query: 352 SRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLT 411
V YP +V E+Y + + DG++ +E+ S+ G+YR + +P+ W L
Sbjct: 710 FDVDYPGGEVGELYDRILKADGLDKDRMRREQREY---SLPGSYRLILLRPLSLTWTHLQ 766
Query: 412 YIDGNKPLAETDLDKI 427
Y D + PL ++D D+I
Sbjct: 767 YTDPDLPLVQSDEDEI 782
>gi|427797329|gb|JAA64116.1| Hypothetical protein, partial [Rhipicephalus pulchellus]
Length = 627
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 171/505 (33%), Positives = 245/505 (48%), Gaps = 107/505 (21%)
Query: 19 RGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVT 78
R + WP + F LYKEN DT EA+ I+ LG+ P G+AGTKDKR+ + QRV+
Sbjct: 213 RRAAPWPSGRPTYTTFVLYKENMDTIEAVNRIATFLGMRPSCLGYAGTKDKRAKTCQRVS 272
Query: 79 VFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLR---GVVVDSEDVIK 135
+ A KL LN+R G+ +G+ + + LG L GNRFTI LR G D E+ ++
Sbjct: 273 CHRLPAKKLLDLNRRQ-GLWVGNITFENAAIKLGDLQGNRFTIVLRDVDGTKADHEEAMQ 331
Query: 136 ASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKA 195
SL NGF+NY+G QRFG+ SV TH +G LL+G ++ AV ++L PR+G +++
Sbjct: 332 ----SLSENGFLNYYGTQRFGTTSVATHHIGRALLKGCYEEAVDLVLQPRDG--GALAEC 385
Query: 196 REYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPG-NYLQALKAIPRTLRMMYVHSYQS 254
RE + + D L KLP E +L+ L K NYL AL A+PR +R++Y+H YQS
Sbjct: 386 REEWARSKDAAQALAKLPHRGCIEGLLLRALTKGGATNYLGALLALPRNVRLLYLHGYQS 445
Query: 255 FLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEV 314
++WN S RVQ+ G V+ GDL+ G +E+E PE
Sbjct: 446 YVWNRLVSRRVQQFGLT-VLPGDLLMTPG-GSEEEPRIAGPE------------------ 485
Query: 315 PETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGI 374
D+ S ++ +VLPLPG V YP N+VA+ Y + +DG+
Sbjct: 486 -------------------DVASA--SVQTLVLPLPGHSVRYPQNEVADWYKEILAEDGL 524
Query: 375 NLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVN 434
L S K + SM+G YR + P + +W+ ++Y D L +DLD++
Sbjct: 525 TLN-SFSEQKHRDL-SMSGCYRHLVAVPREVQWQEVSYTDPQAALVLSDLDRLQGL---- 578
Query: 435 IVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQG 494
+P C E+++ A
Sbjct: 579 -------------PEPQSC---------------ESDDNA-------------------- 590
Query: 495 KQMALKLGLTLPSSCYATMAIRELL 519
+ ALKL L SSCYATMA+RELL
Sbjct: 591 -RRALKLEFNLSSSCYATMAVRELL 614
>gi|363749469|ref|XP_003644952.1| hypothetical protein Ecym_2402 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888585|gb|AET38135.1| Hypothetical protein Ecym_2402 [Eremothecium cymbalariae
DBVPG#7215]
Length = 672
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 175/543 (32%), Positives = 267/543 (49%), Gaps = 83/543 (15%)
Query: 3 RNSKKRKER-GDNPFDSRGSENWPEQLGK-FLRFHLYKENKDTQEALGLISKMLGILPRS 60
RNS+ KE+ + D+ G NW K ++ F +YKENKDT + + I+K L + R+
Sbjct: 182 RNSRVNKEQLNEQTKDANGVVNWGYGPAKNYIHFTVYKENKDTMDVVNTIAKFLRVPTRT 241
Query: 61 FGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRF- 119
++GTKD+R+V+ QR+ + K +L +LN+ L GI +G F + + L LG L GN F
Sbjct: 242 IRYSGTKDRRAVTCQRLCISKLGLDRLNSLNRTLKGITVGGFKFEDQPLNLGDLKGNEFV 301
Query: 120 -----TITLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEW 174
+ + +D+++A +SL GFINYFG+QRFG+ SV TH +G LL W
Sbjct: 302 IVIRDVVVDENSSMQVKDILEAGCSSLIDKGFINYFGMQRFGTFSVSTHEIGRELLVENW 361
Query: 175 KSAVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGN-- 232
K A ++IL +E + +AR+ + + D L +PR +AE +IL L +
Sbjct: 362 KRAAELILAEQENVLPKSKEARKIWAQEKDPKAALAAMPRQCLAENSILHALTNQSADEN 421
Query: 233 -------YLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDD 285
Y A+ IPR LR MYVH+YQS++WN S R++ +G +VVVGDLV D+
Sbjct: 422 GDYSEAAYYTAVMKIPRNLRTMYVHAYQSYVWNTIVSKRIELYGL-NVVVGDLVL---DN 477
Query: 286 TEKELGCVN---PEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTI 342
+ +E + E E E S D +S + K +T D++SG Y I
Sbjct: 478 SVQETPLASNSEDELETEFSEDLRESQFVR--------------AKALTQEDVDSGNYAI 523
Query: 343 DDVVLPLPGSRVIYPMND-VAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQK 401
DDVVLP PG V+YP N+ + +Y + KD ++ V++F S++G+YR + QK
Sbjct: 524 DDVVLPTPGFDVLYPTNETLRNLYSDIMAKDNLDPDNMRRKVRDF---SLSGSYRHIIQK 580
Query: 402 PMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLS 461
P + ++ ++ Y + + L TD + + + K N KD D +
Sbjct: 581 PENVDYRVVKYSEDTQQLINTDFE-------ILLNKRARDNGRNYMKDKLDRFVPEK--- 630
Query: 462 KDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKT 521
G + KLG+ S YATMA+REL+K
Sbjct: 631 ---------------------------GGQKVAVILKFKLGV----SAYATMALRELMKL 659
Query: 522 STS 524
TS
Sbjct: 660 ETS 662
>gi|388857516|emb|CCF48872.1| related to PUS7-Pseudouridine synthase [Ustilago hordei]
Length = 812
Score = 249 bits (635), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 193/614 (31%), Positives = 287/614 (46%), Gaps = 154/614 (25%)
Query: 11 RGDNPFDSRGSENWPEQL---GKFLRFHLYKENKDTQEALGLISKMLGI----------- 56
R N D R SE PE+ ++ F L+K N+D QEA+G+++ ++ +
Sbjct: 244 RWANRSDRRISEELPEEARNSPPYIHFLLHKTNRDHQEAMGMLADLMRLGGGGGGGGRGG 303
Query: 57 -----------------LP-RSFGFAGTKDKRSVSTQRVTVFKQR--------------- 83
LP + G AGTKDKR+V+ QRV++ + R
Sbjct: 304 RGRGRGRGGFAGRGGGRLPTKDLGVAGTKDKRAVTVQRVSLKRNRKTLDDVYRLVNGITA 363
Query: 84 ----ASKLAALNKRLI----------GIRLGDFCYVKEGLLLGQLLGNRFTITLRGV--- 126
+ R + GIR+G Y ++ L LGQL GN FTITLR V
Sbjct: 364 DVGASKGKGKGKGRTVLDATTARGDRGIRIGHLSYAQQPLKLGQLKGNEFTITLRNVRPS 423
Query: 127 --VVDSEDV-------IKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSA 177
S DV ++AS L GFINYFG+QRFG+G++PTH +G +L+ + KSA
Sbjct: 424 PFSSSSGDVDEAFLSTVRASMEVLRNRGFINYFGMQRFGTGAIPTHHIGILILQNDLKSA 483
Query: 178 VKMILDPR--------EGERNEISKAREYYKETDDIDGTLRK----LPRHLVAERAILQC 225
+ ++ PR +G+ ++ KA++ Y+ DG L K +P++ +AE+ IL
Sbjct: 484 INLLFLPRGPSTPTSDDGDSIDLLKAKQLYR-----DGELEKAYYAIPKNCIAEKHILDK 538
Query: 226 L---KKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCK 282
+ K G++ A IPRTLR+MYVH+YQS++WN S R+++ G+ V GD+VF
Sbjct: 539 MRSHKWNSGDWQGAFGNIPRTLRLMYVHAYQSYVWNRLVSERIERFGSGEAVEGDVVFAD 598
Query: 283 GDDTEKELGCVNPEFEYESSNDADDSSHL--DE--VPETDHPDGRHNLVKTVTAADINSG 338
++ + G + E E D D L DE VP P +K + AD+ G
Sbjct: 599 ANEDDI-WGADDDEPAAEKDGDEMDEDDLRNDEMKVPTWQRP------IKVLIKADLEEG 651
Query: 339 KYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRV 398
K++I DV+LPLPGS + P ++++Y + D NLT + + G+YRR+
Sbjct: 652 KWSIYDVILPLPGSSIDLPPGWMSDLYTSILAAD--NLTHDQLTSSKTPEYQLKGSYRRM 709
Query: 399 FQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSE 458
KP +F++ + +Y D + PL TD E +C N E
Sbjct: 710 LVKPRNFDYRITSYTDPDVPLTYTD----------------EELCLNPE----------- 742
Query: 459 SLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQM-ALKLGLTLPSSCYATMAIRE 517
LS + P E+ G + +GK+ AL L LPSS YATM +RE
Sbjct: 743 -LSNSL-----------------PGAEN--GKEKEGKKFTALTLKFQLPSSSYATMLMRE 782
Query: 518 LLKTSTSVAFHKTL 531
LK TS H+ L
Sbjct: 783 ALKEDTSSHKHRQL 796
>gi|255930247|ref|XP_002556683.1| Pc06g00700 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211581296|emb|CAP79063.1| Pc06g00700 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 730
Score = 248 bits (632), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 170/533 (31%), Positives = 269/533 (50%), Gaps = 95/533 (17%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
NW E G +L F +YKENKDT E +G I++ L P+S FAGTKD+R V+ QR +
Sbjct: 240 NWEELGGPYLHFTIYKENKDTMEVIGFIARSLKTNPKSLQFAGTKDRRGVTVQRACAVRA 299
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGV-------------VVD 129
+LAA+N L + DF + K GL LG L GN F ITLR V +
Sbjct: 300 HPGRLAAVNSELRNAYITDFEHRKHGLELGDLQGNEFVITLRDVEIPGVSLSEPQAAIAK 359
Query: 130 SEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILD--PR-- 185
+ +V+ S +L + G+ NY+GLQRFG+ + T +VG +L+G++K A IL P+
Sbjct: 360 ASEVVATSLKNLYQRGYFNYYGLQRFGTFATRTDVVGVKMLQGDYKGACDAILQYSPKSL 419
Query: 186 ----EGERNEI---------SKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGN 232
EG+ + + + A ++ ++ L+K+PR AE +L+ L + +
Sbjct: 420 QAAMEGKMSTLNIGSDDKDRAMAINIFQTGGNVKDALQKMPRKFSAENNLLRHLGRNKKD 479
Query: 233 YLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGC 292
YL AL++IPR LR+MYVH+YQS +WN AAS R + +G + VV GDLV + + +KE
Sbjct: 480 YLGALQSIPRNLRLMYVHAYQSLVWNFAASERWRLYG-DRVVAGDLVIIQ-EHRDKETVS 537
Query: 293 VNPEFEYESSNDADDSSHLDEVPE-TDHPDGRHNL---VKTVTAADINSGKYTIDDVVLP 348
V E++ D + VP+ D ++ + +TA + SGKYTI D+VLP
Sbjct: 538 VA-----EAAETVDADGEIIVVPQGEDSAVAAEDMFMRARALTAEEAASGKYTIFDLVLP 592
Query: 349 LPGSRVIYPMNDVAEVYHH-LAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPM--DF 405
PG +IYP N++ E Y + + G L S + +++ S++G+YR++F + M ++
Sbjct: 593 QPGYDIIYPENEMKEFYRRFMGSEHGGGLDPS-NMRRQWKDISLSGSYRKIFSRMMTDNY 651
Query: 406 EWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIK 465
+++ Y ++ +TDL K+ + +++ A ++ P+D
Sbjct: 652 SFDVKLYSKDDEQFVKTDLQKL-------MGEDKAADTAVADETPAD------------- 691
Query: 466 LSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIREL 518
++A+ L L SS YATMA+REL
Sbjct: 692 ------------------------------KLAVILKFQLGSSQYATMALREL 714
>gi|358365459|dbj|GAA82081.1| pseudouridine synthase TruD/Pus7 [Aspergillus kawachii IFO 4308]
Length = 737
Score = 248 bits (632), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 183/549 (33%), Positives = 265/549 (48%), Gaps = 100/549 (18%)
Query: 12 GDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRS 71
G N R NW E G +L F LYKENKDT E L IS+ L I ++F FAGTKD+R
Sbjct: 235 GRNNARPRVPVNWDELGGPYLHFTLYKENKDTMEVLSFISRQLKINTKNFQFAGTKDRRG 294
Query: 72 VSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLR------- 124
V+ QR + A +LA +N L LGDF + K GL LG L GN F I+LR
Sbjct: 295 VTVQRACAHRLHAERLAKINPTLRNAALGDFEHCKHGLDLGDLNGNEFVISLRECDIPGV 354
Query: 125 ------GVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAV 178
+ ++DV+ + +L G+ NYFGLQRFG+ + T VG +L+G++K A
Sbjct: 355 DFSDREAAIAKAKDVVGTALRNLRERGYFNYFGLQRFGTFATRTDTVGVKMLQGDFKGAC 414
Query: 179 KMILD--------PREGERNEI-----SKAR----EYYKETDDIDGTLRKLPRHLVAERA 221
IL +EGE + KAR ++ T + + L KLPR AE
Sbjct: 415 DAILQYSPHALAAAQEGENSTAMVSSDDKARAEAIHIFETTGNANKALEKLPRKFAAEST 474
Query: 222 ILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFC 281
+++ L + +YL AL+AIPR LR+MYVH+YQS +WN AA R + +G + VV GDLV
Sbjct: 475 VMRQLSRAQNDYLGALQAIPRNLRLMYVHAYQSLVWNFAAGERWRLYG-DKVVEGDLVLV 533
Query: 282 KGDDTEKELGCVNPEFEYESSND------ADDSSHLDEVPETDHPDGRHNLVKTVTAADI 335
+ + G E ++ + A DS+++ E + +TA +
Sbjct: 534 HEHSDKDDAGAAAAAGEVDADGEVIITPQAGDSAYVSE---------GITRARALTAEEA 584
Query: 336 NSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHL---AEKDGINLTESLHNVKEFSITSMT 392
SGKY+I DVVL PG V+YP N + + Y A+ G++ + +E S+T
Sbjct: 585 ASGKYSIFDVVLTQPGYDVLYPANKMTDFYKQFMGSAQGGGLDPFDMRRKWRE---VSLT 641
Query: 393 GNYRRVFQKP-MDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPS 451
G+YR++ +P DF +++ Y ++ +TDL+K+ K E EA
Sbjct: 642 GSYRKLLNRPGPDFSFDVHVYSQDDEQFVQTDLEKLQGKK-----TETEA---------- 686
Query: 452 DCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYA 511
S E ++ A+E ++A+ L L SS YA
Sbjct: 687 ---------------SGEATPSSNAQE-----------------KLAIVLKFQLGSSQYA 714
Query: 512 TMAIRELLK 520
TMA+REL K
Sbjct: 715 TMALRELSK 723
>gi|145230273|ref|XP_001389445.1| pseudouridine synthase TruD/Pus7 [Aspergillus niger CBS 513.88]
gi|134055562|emb|CAK37208.1| unnamed protein product [Aspergillus niger]
gi|350638488|gb|EHA26844.1| hypothetical protein ASPNIDRAFT_46431 [Aspergillus niger ATCC 1015]
Length = 737
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 181/549 (32%), Positives = 264/549 (48%), Gaps = 100/549 (18%)
Query: 12 GDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRS 71
G N R NW E G +L F LYKENKDT E L IS+ L I ++F FAGTKD+R
Sbjct: 235 GRNNARPRVPVNWDELGGPYLHFTLYKENKDTMEVLSFISRQLKINTKNFQFAGTKDRRG 294
Query: 72 VSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLR-----GV 126
V+ QR + A +L +N L LGDF Y K GL LG L GN F I+LR GV
Sbjct: 295 VTVQRACAHRLHAERLTKINPTLRNAALGDFEYCKHGLDLGDLNGNEFVISLRECDIPGV 354
Query: 127 --------VVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAV 178
V +++V+ + +L G+ NYFGLQRFG+ + T VG +L+G++K A
Sbjct: 355 DFSNRETAVAKAKEVVGTALRNLRERGYFNYFGLQRFGTFATRTDTVGVKMLQGDFKGAC 414
Query: 179 KMILD--------PREGERNEI-----SKAR----EYYKETDDIDGTLRKLPRHLVAERA 221
IL +EGE + KAR ++ T + + L KLPR AE
Sbjct: 415 DAILQYSPHALAAAQEGENSTALVSSDDKARAEAIHIFETTGNANKALEKLPRKFAAEST 474
Query: 222 ILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFC 281
+++ L + +YL AL+AIPR LR+MYVH+YQS +WN AA R + +G + VV GDLV
Sbjct: 475 VMRQLSRAQNDYLGALQAIPRNLRLMYVHAYQSLVWNFAAGERWRLYG-DKVVEGDLVLV 533
Query: 282 KGDDTEKELGCVNPEFEYESSND------ADDSSHLDEVPETDHPDGRHNLVKTVTAADI 335
+ + E ++ + A DS+++ E + +TA +
Sbjct: 534 HEHSDKDDTAAAAAAGEVDADGEVIITPQAGDSAYVSE---------GITRARALTAEEA 584
Query: 336 NSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHL---AEKDGINLTESLHNVKEFSITSMT 392
SGKY+I DVVL PG V+YP N + + Y A+ G++ + +E S+T
Sbjct: 585 ASGKYSIFDVVLTQPGYDVLYPPNKMTDFYKQFMGSAQGGGLDPFDMRRKWRE---VSLT 641
Query: 393 GNYRRVFQKP-MDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPS 451
G+YR++ +P DF +++ Y ++ +TDL+K+ K
Sbjct: 642 GSYRKLLNRPGPDFSFDVHVYTQDDEQFVQTDLEKLQGKK-------------------- 681
Query: 452 DCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYA 511
+ + S E ++ A+E ++A+ L L SS YA
Sbjct: 682 ----------AETETSGEATPSSNAQE-----------------KLAIVLKFQLGSSQYA 714
Query: 512 TMAIRELLK 520
TMA+REL K
Sbjct: 715 TMALRELSK 723
>gi|115397425|ref|XP_001214304.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114192495|gb|EAU34195.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 748
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 169/546 (30%), Positives = 258/546 (47%), Gaps = 94/546 (17%)
Query: 11 RGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKR 70
RG +RG NW + G +L F +YKENKDT E + I++ L + P+ F FAGTKD+R
Sbjct: 247 RGPGNGQNRGRFNWEDVGGPYLHFTIYKENKDTMEVISFIARQLKMNPKGFQFAGTKDRR 306
Query: 71 SVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLR------ 124
V+ QR ++ +LA LN L RLGDF Y+ GL LG L GN F ++LR
Sbjct: 307 GVTAQRACAYRVHVDRLARLNSTLRNARLGDFEYLPHGLELGDLAGNEFVVSLRECEIPG 366
Query: 125 -------GVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSA 177
V + +++ ++ SL G+ NY+GLQRFG+ S T VG +L+G++K A
Sbjct: 367 VDLQDREAAVSKASELVSSALKSLRERGYFNYYGLQRFGTFSTRTDTVGVKMLQGDFKGA 426
Query: 178 VKMILD--------PREGERNEI-----SKAR----EYYKETDDIDGTLRKLPRHLVAER 220
+ IL RE E + KAR ++ T + + K+PR AE
Sbjct: 427 CEAILHFSPHILAAARETEHSTAPISSDDKARAEAIHLFQTTGNAAEAIEKMPRKFSAET 486
Query: 221 AILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVF 280
+++ L + +YL AL+ IPR LR+MYVH+YQS +WN A R + +G + VV GDLV
Sbjct: 487 CLMRYLSRQKNDYLGALQTIPRNLRLMYVHAYQSLVWNFAVGERWRLYG-DKVVEGDLVL 545
Query: 281 C-----KGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADI 335
K + G V+ + E + A+DSS+ + +TA +
Sbjct: 546 IHEHEDKTPSSAPATGEVDADGEVIIAPQANDSSY--------KAGDAFVRARALTAEEA 597
Query: 336 NSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNY 395
SGKY+I D+VLPLPG V+YP N + + Y + +++ S++G Y
Sbjct: 598 ASGKYSIFDIVLPLPGYDVLYPANAMTDFYKRFMGSEQGGGLSPFEMRRKWKEVSLSGGY 657
Query: 396 RRVFQK-PMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCM 454
R++ + ++ E+ Y ++ +TDL+K+ + V E ++
Sbjct: 658 RKILSRMGPEYSSEVKIYSRDDEQFVQTDLEKLNPTAAESTVTETDS------------- 704
Query: 455 KQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMA 514
+ES K +A+ L L SS YATMA
Sbjct: 705 --AESTDK----------------------------------LAVVLKFQLGSSQYATMA 728
Query: 515 IRELLK 520
+REL++
Sbjct: 729 LRELMR 734
>gi|85084496|ref|XP_957319.1| hypothetical protein NCU06428 [Neurospora crassa OR74A]
gi|28918409|gb|EAA28083.1| predicted protein [Neurospora crassa OR74A]
Length = 891
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 161/458 (35%), Positives = 246/458 (53%), Gaps = 72/458 (15%)
Query: 11 RGDNPFDSRG---SENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTK 67
R +N +SR S+++ + G++L F +YKENKDT +A+ I+++L + +FGFAGTK
Sbjct: 189 RANNSNNSRSRDQSKSFTQLGGEYLHFTMYKENKDTMDAVNTIARLLKVKATNFGFAGTK 248
Query: 68 DKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLR--- 124
D+R+ + QR++V +QRAS L LN RL I++GDF + KE L LGQ GN F ITL+
Sbjct: 249 DRRAGTVQRISVHRQRASNLIWLNTRLPNIKVGDFSHSKEPLQLGQHGGNEFVITLKNCK 308
Query: 125 -----GVVVDS-----EDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEW 174
G VD + ++ L R+G+INY+GLQRFG+ ++ THL+G +L+ ++
Sbjct: 309 PLGGAGCSVDQRVRKLREAVEFGLAYLQRHGYINYYGLQRFGTYAIGTHLLGMKVLKEDY 368
Query: 175 KSAVKMIL-----------DPREGE---RNEISKAREYY---------KETDDIDGTLRK 211
+ + IL D E E N+ +R+ Y K T + + L
Sbjct: 369 EGVLDDILHVEDHFLHEAFDLEEQEPAHTNDFHNSRDDYNRAKAITIWKTTRNAEKALAI 428
Query: 212 LPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTE 271
LP+ +E AI++ L K +++ AL +I R +RMMY+H+YQS++WNH AS R +G
Sbjct: 429 LPKRFSSEAAIIRHLGKNSKDFMGALLSITRGMRMMYIHAYQSYVWNHMASKRWAMYGPT 488
Query: 272 HVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVT 331
VV GDLV D +S DAD ++ + + + +T
Sbjct: 489 -VVEGDLVLVSND---------------QSPADAD----------SEDNENFYAQARALT 522
Query: 332 AADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHL---AEKDGINLTESLHNVKEFSI 388
DI SGKYTI DVVLP PG VIYP N++ + Y E G++ + KEF
Sbjct: 523 QEDIASGKYTIFDVVLPTPGYDVIYPRNEIGKAYVDFMKKTENGGLDPYDMRRRQKEF-- 580
Query: 389 TSMTGNYRRVFQKPM-DFEWELLTYIDGNKPLAETDLD 425
S++GNYR + + + + ++ + Y D + + TDLD
Sbjct: 581 -SLSGNYRHLLGRFIGEPQYAIRVYNDDTEQMYPTDLD 617
>gi|295657443|ref|XP_002789290.1| pseudouridine synthase [Paracoccidioides sp. 'lutzii' Pb01]
gi|226283960|gb|EEH39526.1| pseudouridine synthase [Paracoccidioides sp. 'lutzii' Pb01]
Length = 769
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 178/546 (32%), Positives = 264/546 (48%), Gaps = 93/546 (17%)
Query: 17 DSR-GSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQ 75
DSR G W E G+ L F +YKENKDT E + I++ + I + FGFAGTKD+R V+ Q
Sbjct: 261 DSRKGRLGWNELGGEHLHFTIYKENKDTMEVVSFIARQMKINAKQFGFAGTKDRRGVTVQ 320
Query: 76 RVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLR----------- 124
R + ++ A +L + K L +GDF Y + L LG L GN F ITLR
Sbjct: 321 RASAYRIYADRLLNVGKSLRNAAVGDFEYHQHRLELGDLNGNEFIITLRDCQFPFDPEEK 380
Query: 125 --GVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL 182
V + D++ S + L + G+ NY+GLQRFG+ S T +G +L+ ++K A IL
Sbjct: 381 VANSVARATDIVSKSLHDLRQRGYFNYYGLQRFGTFSTRTDTIGLKMLQEDYKGACDCIL 440
Query: 183 -----------------DPREG---ERNEISKAR--EYYKETDDIDGTLRKLPRHLVAER 220
P ++I++A ++ T I+ L KLPR AE
Sbjct: 441 HFNPLALSASQSQLQSESPASKTLISADDIARAEAIHAFQTTGKINAALDKLPRKFSAES 500
Query: 221 AILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVF 280
I++ L + +Y AL IPR+LR+MYVH+YQS +WN A R + +G E VV GDLV
Sbjct: 501 NIIRHLGRHKNDYFGALGTIPRSLRLMYVHAYQSLVWNFAVGERWRLYG-EKVVAGDLVL 559
Query: 281 CKGDDTEKELG-CVNPEFEYESSNDA---DDSSHLDEVPETDHPDGRHNLVKTVTAADIN 336
D EKE E+++ D D+ D P D L + ++A +
Sbjct: 560 VN-DFKEKEGARAAGGAEEFDADGDVVILPDAG--DSTPAADM----FELARALSAEEAA 612
Query: 337 SGKYTIDDVVLPLPGSRVIYPMNDVAEVY-HHLAEKDGINLTESLHNVKEFSITSMTGNY 395
SGKY+I D+VLPLPG ++YP N++ Y + K G L + + + S++G Y
Sbjct: 613 SGKYSIFDIVLPLPGFDILYPDNEMKTFYKEFMGSKRGGKL-DPFDMRRSWKDISLSGGY 671
Query: 396 RRVFQKP-MDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCM 454
R++ KP D+ +E+ Y ++ +TDL+K+ A+ G K +PSD
Sbjct: 672 RKLLSKPGPDYSFEVKAYAGDDEQFVQTDLEKLKMAR----------NGGEKIAEPSDAT 721
Query: 455 KQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMA 514
+ + + D ++A+ L L L SS YATMA
Sbjct: 722 EAVDGKTAD--------------------------------KLAVVLKLQLGSSQYATMA 749
Query: 515 IRELLK 520
+REL+K
Sbjct: 750 LRELMK 755
>gi|156064111|ref|XP_001597977.1| hypothetical protein SS1G_00063 [Sclerotinia sclerotiorum 1980]
gi|154690925|gb|EDN90663.1| hypothetical protein SS1G_00063 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1084
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 169/477 (35%), Positives = 252/477 (52%), Gaps = 62/477 (12%)
Query: 2 GRNSKKRKERGDNPFDSRGSEN----------WPEQLGKFLRFHLYKENKDTQEALGLIS 51
G+N + R ++ D RG N W E G++L F LYKENKDT E + L+S
Sbjct: 309 GQNQRGRGQQNSGRGDFRGQSNGQPKPKGKVGWQELGGEYLHFTLYKENKDTMETVNLLS 368
Query: 52 KMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRL-IGIRLGDFCYVKEGLL 110
K+L + F +AGTKD+R+ + QRV+ F+ +A LN++L G+R+GDF Y K L
Sbjct: 369 KLLRTKTKDFAYAGTKDRRAATAQRVSAFRHHVKSMADLNQKLRYGVRVGDFKYEKYPLR 428
Query: 111 LGQLLGNRFTITLR----GVVVDSEDV--IKASANSLG-------RNGFINYFGLQRFGS 157
LG L GN FTITLR G D +D ++++ N +G GF+NYFGLQRFG+
Sbjct: 429 LGDLEGNVFTITLRDCNFGDDTDMDDATKVQSAKNVVGDAIAHLQTRGFLNYFGLQRFGT 488
Query: 158 GSVPTHLVGATLLRGEWKSAVKMILDPREGE--------------RNEISKAREYYKETD 203
++ TH +G +L+G +K AV +L E R+++ +A +K +
Sbjct: 489 FAIGTHEIGKLILKGNFKGAVDALLTFSEDALAVAQSGKDGGSIGRDDMGRALAIHKFRE 548
Query: 204 DIDGTLRK-LPRHLVAERAILQCLKKCP--GNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
R LP+ AERA++Q L +Y A+ +I R LR MYVHSYQSF+WN
Sbjct: 549 TGKNYCRDHLPQRFSAERAVIQHLSSARKHDDYAGAILSISRHLRTMYVHSYQSFIWNVV 608
Query: 261 ASARVQKHGTEHVVVGDLVFC--KGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETD 318
AS R +++G + V+ GDLV K + E+ + S DA SS DEV
Sbjct: 609 ASRRWERYG-DKVIEGDLVLVESKAPEQRDEVDENGEVVIHASGGDAALSS--DEV---- 661
Query: 319 HPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHL---AEKDGIN 375
+ ++A + SG +TI D+VLP+PG + YP N++ + Y + G++
Sbjct: 662 -----FQRARCLSAEEAGSGNFTIFDIVLPMPGFDIEYPSNEIGDYYKEFMAGEQGGGLD 716
Query: 376 LTESLHNVKEFSITSMTGNYRRVFQKPMD-FEWELLTYIDGNKPLAETDLDKIAKAK 431
+ +K+F S++G+YR + K + +E+ TY D + L ETDL+ I KAK
Sbjct: 717 PADMRRKIKDF---SLSGSYRNLIGKVREGMTFEVKTYHDEREQLVETDLEIIEKAK 770
>gi|336469314|gb|EGO57476.1| hypothetical protein NEUTE1DRAFT_62388 [Neurospora tetrasperma FGSC
2508]
gi|350291052|gb|EGZ72266.1| tRNA pseudouridine synthase D, partial [Neurospora tetrasperma FGSC
2509]
Length = 893
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 161/458 (35%), Positives = 246/458 (53%), Gaps = 72/458 (15%)
Query: 11 RGDNPFDSRG---SENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTK 67
R +N +SR S+++ + G++L F +YKENKDT +A+ I+++L + +FGFAGTK
Sbjct: 189 RANNSNNSRSRDQSKSFTQLGGEYLHFTMYKENKDTMDAVNTIARLLKVKATNFGFAGTK 248
Query: 68 DKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLR--- 124
D+R+ + QR++V +QRAS L LN RL I++GDF + KE L LGQ GN F ITL+
Sbjct: 249 DRRAGTVQRISVHRQRASNLIWLNTRLPNIKVGDFSHSKEPLQLGQHGGNEFVITLKNCK 308
Query: 125 -----GVVVDS-----EDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEW 174
G VD + ++ L R+G+INY+GLQRFG+ ++ THL+G +L+ ++
Sbjct: 309 PLGGAGCSVDQRVRKLREAVEFGLAYLQRHGYINYYGLQRFGTYAIGTHLLGMKVLKEDY 368
Query: 175 KSAVKMIL-----------DPREGE---RNEISKAREYY---------KETDDIDGTLRK 211
+ + IL D E E N+ +R+ Y K T + + L
Sbjct: 369 EGVLDDILHVEDHFLHEAFDLEEQEPAHTNDFHNSRDDYNRAKAITIWKTTRNAEKALAI 428
Query: 212 LPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTE 271
LP+ +E AI++ L K +++ AL +I R +RMMY+H+YQS++WNH AS R +G
Sbjct: 429 LPKRFSSEAAIIRHLGKNSKDFMGALLSITRGMRMMYIHAYQSYVWNHMASKRWAMYGPT 488
Query: 272 HVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVT 331
VV GDLV D +S DAD ++ + + + +T
Sbjct: 489 -VVEGDLVLVSND---------------QSPADAD----------SEDNENFYAQARALT 522
Query: 332 AADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHL---AEKDGINLTESLHNVKEFSI 388
DI SGKYTI DVVLP PG VIYP N++ + Y E G++ + KEF
Sbjct: 523 QEDIASGKYTIFDVVLPTPGYDVIYPRNEIGKAYVDFMKKTENGGLDPYDMRRRQKEF-- 580
Query: 389 TSMTGNYRRVFQKPM-DFEWELLTYIDGNKPLAETDLD 425
S++GNYR + + + + ++ + Y D + + TDLD
Sbjct: 581 -SLSGNYRHLLGRFIGEPQYAIRVYNDDTEQMYPTDLD 617
>gi|402864498|ref|XP_003896499.1| PREDICTED: pseudouridylate synthase 7 homolog [Papio anubis]
Length = 724
Score = 245 bits (625), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 161/512 (31%), Positives = 243/512 (47%), Gaps = 111/512 (21%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+WP+ G + F LYKENKDT +A+ ++S+ L + P F + GTKDKR+++ Q + V K
Sbjct: 317 SWPKSRGSYCHFVLYKENKDTMDAINVLSRYLRVKPNIFSYMGTKDKRAITVQEIAVLKI 376
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
A +LA LNK L+ +LG+F Y K L LG+L GN FT+ LR + ++D ++ + NSL
Sbjct: 377 TAQRLAHLNKCLMNFKLGNFSYQKNPLKLGELQGNHFTVVLRN-ITGTDDQVQQAMNSLR 435
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKE 201
GFINY+G+QRFG+ +VPT+ VG +L+ W + +IL PR G E+ + K RE + +
Sbjct: 436 EIGFINYYGMQRFGTTAVPTYQVGRAILQNSWTEVMDLILKPRSGAEKGYLVKCREEWAK 495
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKKC-PGNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
T D LRKLP +K+C G L+ L
Sbjct: 496 TKDPAAALRKLP------------VKRCVEGQLLRGL----------------------- 520
Query: 261 ASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHP 320
K+G +++V + K+ C E S+ S E+ E H
Sbjct: 521 -----SKYGMKNIVSAFGIVSAIYAQTKQNSC---RMELVVSSVISVLSLSMELREKKHS 572
Query: 321 DGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESL 380
+ + D+N+ Y+I DVV+PLPG VIYP + + E Y + D +++
Sbjct: 573 TASY-----IEEDDVNN--YSIHDVVMPLPGFDVIYPKHKIQEAYREMLTADNLDIDNMR 625
Query: 381 HNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEE 440
H ++++ S++G YR++ +P + WE++ Y D PL TD+D +
Sbjct: 626 HKIRDY---SLSGAYRKIIIRPQNVSWEVVAYDDPKIPLFNTDVDNL------------- 669
Query: 441 AVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALK 500
E K P V + S+GK ALK
Sbjct: 670 -------------------------------------EGKPPPVFA-----SEGKYRALK 687
Query: 501 LGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
+ +LP S YATMAIRE+LK TS+ LN
Sbjct: 688 MDFSLPPSTYATMAIREVLKMDTSIKNQTQLN 719
>gi|332029659|gb|EGI69548.1| Pseudouridylate synthase 7-like protein [Acromyrmex echinatior]
Length = 737
Score = 244 bits (623), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 165/525 (31%), Positives = 262/525 (49%), Gaps = 84/525 (16%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+W G + F L+K N DT + ++ L + P +F +AGTKD+R+ +TQ +++ K
Sbjct: 215 DWSRCGGDYCHFLLHKVNMDTISVVNQLAVSLRLQPNNFCYAGTKDRRAWTTQWISLRKV 274
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
+ K + G +G+F Y K+ L LG L GN+F I LR ++++ I+ SL
Sbjct: 275 EPHNILRAGKSIRGAYVGNFKYAKDSLKLGMLSGNQFRIALRN-ACETDEKIEQVMKSLQ 333
Query: 143 RNGFINYFGLQRFGS-GSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKE 201
NGFINY+GLQRFGS ++PTH +G LL+G+W +++IL PR + NE+++ R Y E
Sbjct: 334 DNGFINYYGLQRFGSVPTIPTHEIGKCLLQGKWHETIELILKPRPEKDNELAEVRRIYAE 393
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLK-KCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
+ D KL R E +L+ L+ N L L +IPR +R+MY+H+YQSF+WNH
Sbjct: 394 SKDARAAYAKLKRIDTIEARLLKGLQISGDKNPLGVLDSIPRNIRLMYIHAYQSFVWNHI 453
Query: 261 ASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPE---FEYESSNDADDSSHLDEVPET 317
S R+++ GTE VVVGDLV+ K + E +N E + + D D++ + V E
Sbjct: 454 VSKRIKQFGTE-VVVGDLVYGKRNCKE----TINDESMDYPLNDNKDIKDNTDITCVEEK 508
Query: 318 DHPDGRHNL-----------VKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYH 366
D + + VK +T D+++ YT+ DVV+P PG +V YP A Y
Sbjct: 509 DIESTSNEMNKENSEQDFPTVKILTEEDLSN--YTLADVVMPQPGWKVTYPPYAKA-WYD 565
Query: 367 HLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDK 426
KDG+ T+ N K++ S++G YR + + P + W+++ Y + + L +D+D+
Sbjct: 566 EFLAKDGLT-TDLRQNNKKY---SLSGAYRNILEIPTNLSWKIMHYENKHDDLILSDIDE 621
Query: 427 IAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVES 486
+ K H+
Sbjct: 622 MRK-----------------------------------------------------HMSP 628
Query: 487 VCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTL 531
++ + K + +++ L SS YATMA+RE+LK TS L
Sbjct: 629 QDKSNGKNKALIIEM--CLKSSSYATMALREILKNDTSAETQAAL 671
>gi|119494379|ref|XP_001264085.1| pseudouridine synthase TruD/Pus7, putative [Neosartorya fischeri
NRRL 181]
gi|119412247|gb|EAW22188.1| pseudouridine synthase TruD/Pus7, putative [Neosartorya fischeri
NRRL 181]
Length = 729
Score = 244 bits (623), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 172/535 (32%), Positives = 264/535 (49%), Gaps = 102/535 (19%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
N+ E G +L F +YKENKDT E + +++ + + PRSF FAGTKD+R V+ QR V +
Sbjct: 246 NFEELGGSYLHFTIYKENKDTMEVISFLARSMKMAPRSFQFAGTKDRRGVTVQRACVSRV 305
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVV------DSEDVIKA 136
A +LA LN L +GD+ Y + GL LG L GN F ITLR V+ + ED +
Sbjct: 306 FADRLAKLNSALRNSAVGDYEYCRHGLELGDLKGNEFVITLRECVIPGVDLQNPEDAVAT 365
Query: 137 SANSLG---RN----GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILD------ 183
+ +G RN G+ NY+GLQRFG+ + T +VG +L+G++K A IL
Sbjct: 366 AKEFVGSALRNLRERGYFNYYGLQRFGTFATRTDMVGLKMLQGDFKGACDAILHYSPHIL 425
Query: 184 --PREGERNEI--------SKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNY 233
+EG + + ++A ++ T + + KLPR AE +++ L + +Y
Sbjct: 426 AAAQEGNSSSLISSDDKARAEAIHIFQTTGKVTEAVEKLPRKFSAENNLIRHLGRSQNDY 485
Query: 234 LQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCV 293
L AL+ IPR LR+MYVH+YQS +WN A R + +G + VV GDLV + +++
Sbjct: 486 LGALQTIPRNLRLMYVHAYQSLVWNFAVGERWRLYG-DKVVEGDLVLIH--EHREKVEAT 542
Query: 294 NPEFEYESSND------ADDSSH-LDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVV 346
PE E ++ + A DS++ +++ E P +TA + SGKY+I DVV
Sbjct: 543 GPEAEVDADGEVVVKPAAHDSAYSAEDMFERARP---------LTAEEAASGKYSIFDVV 593
Query: 347 LPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQK-PMDF 405
LPLPG V+YP N++ Y + + +++ S++G YR+V + D+
Sbjct: 594 LPLPGFDVVYPANEMTNFYKRFMGSEQGGGLDPFDMRRKWKDISLSGGYRKVLSRMGADY 653
Query: 406 EWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIK 465
++ Y ++ +TDLD++ K
Sbjct: 654 SVDVKLYSQDDEQFVQTDLDRL----------------------------------NGKK 679
Query: 466 LSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLK 520
+TE+N ADS K +A+ L L SS YATMA+REL+K
Sbjct: 680 AATESN------------------ADSADK-IAVILKFQLGSSQYATMALRELMK 715
>gi|67517507|ref|XP_658588.1| hypothetical protein AN0984.2 [Aspergillus nidulans FGSC A4]
gi|40746857|gb|EAA66013.1| hypothetical protein AN0984.2 [Aspergillus nidulans FGSC A4]
gi|259488723|tpe|CBF88395.1| TPA: pseudouridine synthase TruD/Pus7, putative (AFU_orthologue;
AFUA_1G16730) [Aspergillus nidulans FGSC A4]
Length = 745
Score = 244 bits (622), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 177/544 (32%), Positives = 263/544 (48%), Gaps = 93/544 (17%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
NW E G++L F +YKENKDT E + I++ L + P+SF FAGTKD+R V+ QR ++
Sbjct: 235 NWDELGGQYLHFTIYKENKDTMEVISFIARQLKMNPKSFQFAGTKDRRGVTVQRACAYRL 294
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLR-------------GVVVD 129
+A +LA LN+ L +GDF Y GL LG L GN F +TLR V
Sbjct: 295 QADRLAKLNRTLRNAVVGDFEYQPHGLELGDLYGNEFVVTLRECEVPGINIQDPASAVAK 354
Query: 130 SEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILD--PR-- 185
+++++ S +L + G+ NY+GLQRFGS + T VG +L+ ++K A ILD P
Sbjct: 355 TKELVNTSLKNLYQRGYFNYYGLQRFGSFATRTDTVGVKILQDDFKGACDAILDYSPHIL 414
Query: 186 ----------EGE---RNEIS---KAR----EYYKETDDIDGTLRKLPRHLVAERAILQC 225
EGE IS KAR ++ TD + L K+PR AE I++
Sbjct: 415 AAAQAELGQGEGEGATPTNISSEDKARALAIHIFRTTDRVTDALEKMPRKFSAESNIIRH 474
Query: 226 LKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFC-KGD 284
L + +YL AL+ IPR LR+MYVH+YQS +WN A R + +G + VV GDLV +
Sbjct: 475 LGRSKNDYLGALQTIPRNLRLMYVHAYQSLVWNLAVGERWRLYG-DRVVEGDLVLIHEHR 533
Query: 285 DTEKELGCVNPEFEYESSNDA---DDSSHLDEVPETDHP----DGRHNLVKTVTAADINS 337
D + P +S + D + VP+ + + +TAA+ NS
Sbjct: 534 DKDGNSSYTTPAPGAGASGETTTIDADGEIIIVPQEHDSAFAVEDTFTRARALTAAEANS 593
Query: 338 GKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRR 397
G Y+I D+VLPLPG V+YP N + + Y + + +++ S++G+YR+
Sbjct: 594 GLYSIFDIVLPLPGFDVLYPPNKMTDFYKEFMGSSRGGGLDPFNMRRKWKDASLSGSYRK 653
Query: 398 VFQK-PMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQ 456
V + D+ +++ Y + TDL+ + K +D D
Sbjct: 654 VLSRMGRDYSVDVVLYSRDEEQFVRTDLENLTL----------------KTRDGGDV--- 694
Query: 457 SESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIR 516
L K KE K S+G ++A+ L L SS YATMA+R
Sbjct: 695 --DLEK--------------KEGK-----------SEGDKLAVVLKFQLGSSQYATMALR 727
Query: 517 ELLK 520
EL++
Sbjct: 728 ELMR 731
>gi|345488002|ref|XP_001603223.2| PREDICTED: pseudouridylate synthase 7 homolog [Nasonia vitripennis]
Length = 833
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 175/548 (31%), Positives = 269/548 (49%), Gaps = 105/548 (19%)
Query: 22 ENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFK 81
++W + G + F L+K N DT +AL I+K+L + F +AGTKD+R+ +TQ ++V K
Sbjct: 216 QDWSLRGGDYCHFILHKVNMDTMDALNQIAKVLRLKSSVFNYAGTKDRRAKTTQWISVKK 275
Query: 82 QRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSL 141
+ + + G +G+F + KE L LG+L GN FTI LR V V S+D+I+ + +
Sbjct: 276 LNPKNIMHGARVVRGAYVGNFKFEKEPLKLGKLDGNMFTIALRNVTV-SDDIIEKAMVNF 334
Query: 142 GRNGFINYFGLQRFGS-GSVPTHLVGATLLRGEWKSAVKMILDPREGERN-EISKAREYY 199
NGFINY+GLQRFG+ ++PT+ +G LL+G W+ AV +IL PREGE++ +++ARE Y
Sbjct: 335 RDNGFINYYGLQRFGTIAAIPTYEIGKALLKGNWEEAVDLILKPREGEQDINLAEAREIY 394
Query: 200 KETDDIDGTLRKLPRHLVAERAILQCLKKC-PGNYLQALKAIPRTLRMMYVHSYQSFLWN 258
K T D +K+ R+ E +L + C N + AL +PR +MYVH+YQS +WN
Sbjct: 395 KNTKDSRLAYQKIGRNDKIEAKLLWGINICGQKNLVGALDMVPRNTMLMYVHAYQSMVWN 454
Query: 259 HAASARVQKHGTEHVVVGDLVF---CKGDDTE--------------------KELGCVNP 295
+ S R+++ G + +VGDLV+ DD E KE
Sbjct: 455 NIVSRRIREFGLK-PIVGDLVYENPNSKDDIETPTDDSHQTTGEDGKSNADAKEQNTEEV 513
Query: 296 EFEYESSNDADDSS---------------HLDEVPETDHPDGRHNLVKTVTAADINSGKY 340
+ + E S + + SS D+ E D + + VK +T D+++ Y
Sbjct: 514 KVKIEDSKNVNQSSTEQQKSVEKKEDSKTEDDKTSEKDDSERQIPKVKILTEEDLSN--Y 571
Query: 341 TIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQ 400
I D+V+P PG +V+YP + HL EKDG+ N K +++G+YR++ Q
Sbjct: 572 KITDIVMPQPGWKVVYPTYAKSWFDDHL-EKDGLTADLKQKNKK----YTLSGSYRKILQ 626
Query: 401 KPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESL 460
P D W ++ Y++ L +D+D++
Sbjct: 627 VPEDLSWNIIRYVNKTDDLIASDIDEM--------------------------------- 653
Query: 461 SKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLK 520
K I+ +N E V Q M+LK SS YATMA+RE+LK
Sbjct: 654 -KGIEAPKDNPEGTFKALVIQ---------------MSLK------SSSYATMALREILK 691
Query: 521 TSTSVAFH 528
TS H
Sbjct: 692 CDTSSQTH 699
>gi|315043744|ref|XP_003171248.1| pseudouridine synthase [Arthroderma gypseum CBS 118893]
gi|311345037|gb|EFR04240.1| pseudouridine synthase [Arthroderma gypseum CBS 118893]
Length = 775
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 176/562 (31%), Positives = 271/562 (48%), Gaps = 90/562 (16%)
Query: 3 RNSKKRKERGDNPFDS-RGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSF 61
R + ++RG S RG W E G +L F LYKENKDT E + +S+ L + P++F
Sbjct: 249 RKKQTGRDRGQGSSQSLRGKLGWSELGGDYLHFTLYKENKDTMEVISYLSRQLKVAPKAF 308
Query: 62 GFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTI 121
FAGTKD+R + QRV+VF+ ++ LN L +GD+ Y K+GL LG+L GN F I
Sbjct: 309 QFAGTKDRRGATAQRVSVFRIYPDRMPKLNASLRMAAIGDYEYQKQGLELGELNGNEFVI 368
Query: 122 TLR------GVV-----------VDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHL 164
TLR GVV +++ S L G+ NY+GLQRFG+ + T
Sbjct: 369 TLRDCQFPEGVVEGDNISNPETIAKVTELVGKSLRDLRERGYFNYYGLQRFGTFATRTDT 428
Query: 165 VGATLLRGEWKSAVKMILD-------PREG----ERNEI----------SKAREYYKETD 203
G +LRGE+K A + IL +G +R + +KA ++ T
Sbjct: 429 TGLKMLRGEFKEACESILHYSSIALAAAQGVSAEDRTQTPQISTDDILRAKAIHIFQTTG 488
Query: 204 DIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASA 263
+ L LPR AE I++ L + +Y AL++IPR LR+MYVH+YQS +WN AA
Sbjct: 489 NGRDALEILPRKFTAESNIIRLLCQRKNDYFGALQSIPRNLRLMYVHAYQSLVWNFAAGE 548
Query: 264 RVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGR 323
R + +G + VV GDLV E + E DAD + +P+ D
Sbjct: 549 RWRLYG-DKVVEGDLVLVNEFKDETKAAGQQAEV------DADGEEIV--LPDADDSAAV 599
Query: 324 HNL---VKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESL 380
++ + +TA + SGKY+I D+VLPLPG ++YP N + + Y + +
Sbjct: 600 DDMFERARALTAEEAASGKYSIFDIVLPLPGFDILYPANKMTDFYKEFMGSEKGGKLDPF 659
Query: 381 HNVKEFSITSMTGNYRRVFQKP-MDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEE 439
+ + S++G+YR+V +P D+ +E+ +Y ++ +TDL+K+
Sbjct: 660 DMRRSWRDISLSGSYRKVLSRPGADYSFEVRSYDAEDEQFVKTDLEKL------------ 707
Query: 440 EAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMAL 499
KE P + + + + + E + A +++A+
Sbjct: 708 ------KENSPKAGDTGNNNNNNENGDNKEKSGAP--------------------EKLAV 741
Query: 500 KLGLTLPSSCYATMAIRELLKT 521
L L +S YATMA+REL+KT
Sbjct: 742 ILKFQLGASQYATMALRELMKT 763
>gi|378730748|gb|EHY57207.1| hypothetical protein HMPREF1120_05254 [Exophiala dermatitidis
NIH/UT8656]
Length = 781
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 172/532 (32%), Positives = 271/532 (50%), Gaps = 67/532 (12%)
Query: 20 GSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTV 79
G W ++ G++L F LYKENKDT EA+ IS L ++F FAGTKD+R+V+ QRV+
Sbjct: 268 GKLGWLDRGGEYLHFTLYKENKDTLEAVSFISNQLKTTNKTFQFAGTKDRRAVTVQRVSA 327
Query: 80 FKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVD-------SED 132
++ A +LA LN+ L +GDF Y K GL LG L GN F +TLR ++ + D
Sbjct: 328 YRIEAPRLAGLNRILRFSAVGDFEYQKHGLELGDLSGNEFVVTLRDCSIEGAESAATTSD 387
Query: 133 VIKASANSLGRN-------GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILD-- 183
+ + + LG++ GF+NY+GLQRFG+ + T VG +L+G+++ A IL
Sbjct: 388 RVSLARSYLGQSLQGLREKGFLNYYGLQRFGTFATRTDAVGVKILQGDYEGACNGILQFS 447
Query: 184 ------PREGERNEI----SKAR----EYYKETDDIDGTLRKLPRHLVAERAILQCLKKC 229
G+ + + +AR ++ T +++ L ++PR AERA+++ L +
Sbjct: 448 PVALAAANAGDSDTMVGQDDRARAEGINIWRTTGNVNEALDRIPRKFSAERALIRELGRQ 507
Query: 230 PGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKE 289
P N+L AL AI R LR+MYVH+YQS +WN A R + +G + VV GDLV + + +KE
Sbjct: 508 PQNFLGALSAIQRNLRLMYVHAYQSLVWNLAVGERWRLYG-DTVVEGDLVLVQ-EHKDKE 565
Query: 290 LGCVNPEFEYESSNDADDSSHLDEVPE--TDHPDGRHNLVKTVTAADINSGKYTIDDVVL 347
E E + DAD + + PD + + +TA + SG+Y+I DVVL
Sbjct: 566 -----ATVEVEPTVDADGEVVIQPAQDDRAKDPDDIYERARALTAEEAASGEYSIFDVVL 620
Query: 348 PLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQK-PMDFE 406
PLPG VIYP N E Y + + ++ S++G YR++ + D++
Sbjct: 621 PLPGFDVIYPANASGEWYKTFMGSEAGGRLDPHDMRRKQRDFSLSGGYRKILARIGADYD 680
Query: 407 WELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKL 466
++ Y + ++ +TDL++I +A G K+KD + ++ + +
Sbjct: 681 LQVHEYRNDSEQFVQTDLERI------------KAERGAKQKDGGETGQEQKQDQDQGQD 728
Query: 467 STENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIREL 518
T VE ++A L L +S YAT+A+REL
Sbjct: 729 QT------STLPTDTSDVEP---------KLAAVLKFQLGASQYATVAMREL 765
>gi|427796457|gb|JAA63680.1| Hypothetical protein, partial [Rhipicephalus pulchellus]
Length = 752
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 151/413 (36%), Positives = 218/413 (52%), Gaps = 54/413 (13%)
Query: 19 RGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVT 78
R + WP + F LYKEN DT EA+ I+ LG+ P G+AGTKDKR+ + QRV+
Sbjct: 187 RRAAPWPSGRPTYTTFVLYKENMDTIEAVNRIATFLGMRPSCLGYAGTKDKRAKTCQRVS 246
Query: 79 VFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLR---GVVVDSEDVIK 135
+ A KL LN+R G+ +G+ + + LG L GNRFTI LR G D E+ ++
Sbjct: 247 CHRLPAKKLLDLNRRQ-GLWVGNITFENAAIKLGDLQGNRFTIVLRDVDGTKADHEEAMQ 305
Query: 136 ASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKA 195
SL NGF+NY+G QRFG+ SV TH +G LL+G ++ AV ++L PR+G +++
Sbjct: 306 ----SLSENGFLNYYGTQRFGTTSVATHHIGRALLKGCYEEAVDLVLQPRDG--GALAEC 359
Query: 196 REYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPG-NYLQALKAIPRTLRMMYVHSYQS 254
RE + + D L KLP E +L+ L K NYL AL A+PR +R++Y+H YQS
Sbjct: 360 REEWARSKDAAQALAKLPHRGCIEGLLLRALTKGGATNYLGALLALPRNVRLLYLHGYQS 419
Query: 255 FLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEV 314
++WN S RVQ+ G V+ GDL+ G +E+E PE
Sbjct: 420 YVWNRLVSRRVQRFGLT-VLPGDLLMTPG-GSEEEPRIAGPE------------------ 459
Query: 315 PETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGI 374
D+ S ++ VVLPLPG V YP N+VA+ Y + +DG+
Sbjct: 460 -------------------DVASA--SVQTVVLPLPGHSVRYPQNEVADWYKEILAEDGL 498
Query: 375 NLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKI 427
L S K + SM+G YR + P + +W+ ++Y D L +DLD++
Sbjct: 499 TLN-SFSEQKHRDL-SMSGCYRHLVAVPREVQWQEVSYTDPQAALVLSDLDRL 549
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 106/269 (39%), Gaps = 96/269 (35%)
Query: 251 SYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSH 310
+ QS++WN S RVQ+ G V+ GDL+ G +E+E PE
Sbjct: 567 ALQSYVWNRLVSRRVQQFGLT-VLPGDLLMTPGG-SEEEPRIAGPE-------------- 610
Query: 311 LDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAE 370
D+ S ++ +VLPLPG V YP N+VA+ Y +
Sbjct: 611 -----------------------DVASA--SVQTLVLPLPGHSVRYPQNEVADWYKEILA 645
Query: 371 KDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKA 430
+DG+ L S K + SM+G YR + P + +W+ ++Y D L +DLD++
Sbjct: 646 EDGLTLN-SFSEQKHRDL-SMSGCYRHLVAVPREVQWQEVSYTDPQAALVLSDLDRLQGL 703
Query: 431 KLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGA 490
+P C E+++ A
Sbjct: 704 -----------------PEPQSC---------------ESDDNA---------------- 715
Query: 491 DSQGKQMALKLGLTLPSSCYATMAIRELL 519
+ ALKL L SSCYATMA+RELL
Sbjct: 716 -----RRALKLEFNLSSSCYATMAVRELL 739
>gi|154298940|ref|XP_001549891.1| hypothetical protein BC1G_11717 [Botryotinia fuckeliana B05.10]
Length = 1084
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 162/449 (36%), Positives = 242/449 (53%), Gaps = 53/449 (11%)
Query: 19 RGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVT 78
+G W E G++L F LYKENKDT E + L+SK+ P+ F +AGTKD+R+ + QRV+
Sbjct: 331 KGKVGWEELGGEYLHFTLYKENKDTMETINLLSKLTRTGPKDFAYAGTKDRRAATAQRVS 390
Query: 79 VFKQRASKLAALNKRLIG-IRLGDFCYVKEGLLLGQLLGNRFTITLR----GVVVDSEDV 133
F+ + +A LNK L R+GDF Y K L LG L GN FTITLR G D +D
Sbjct: 391 AFRHHLTSMAELNKTLRNRCRVGDFKYEKYPLRLGDLEGNVFTITLRDCHFGDDTDMDDA 450
Query: 134 IKASA---------NSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-- 182
KA + L GF+NYFGLQRFG+ ++ TH +G +L+G +K AV +L
Sbjct: 451 AKAQSAEKVVGDAVKHLQTRGFLNYFGLQRFGTFAIGTHEIGKLILKGNFKGAVDSLLAF 510
Query: 183 ------------DPREGERNEISKAREYYK--ETDDIDGTLRKLPRHLVAERAILQCL-- 226
D R+++++A +K ET G LP AERA++Q +
Sbjct: 511 NEDALAAAQSGQDSSSIGRDDMARALAIHKFQETGRNSGGRDSLPPRFSAERAVIQHMSS 570
Query: 227 KKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFC--KGD 284
++ +Y A+ +I R LR MYVHSYQSF+WN AS R +++G + V+ GDLV K
Sbjct: 571 ERKRNDYAGAILSISRHLRTMYVHSYQSFIWNVVASRRWERYG-DKVIEGDLVLVESKAP 629
Query: 285 DTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDD 344
+ + E+ + S DA +S DEV + ++A + +SG +TI D
Sbjct: 630 EQKDEVDENGEIVIHASGGDAALTS--DEV---------FQRARCLSAEEADSGAFTIFD 678
Query: 345 VVLPLPGSRVIYPMNDVAEVYHHLAEKD---GINLTESLHNVKEFSITSMTGNYRRVFQK 401
+VLP+PG + YP N++ + Y + G++ + +K+F S++G+YR + +
Sbjct: 679 IVLPMPGYDIEYPNNEIGDFYKEFMASEQGGGLDPADMRRKIKDF---SLSGSYRHLIGR 735
Query: 402 PMD-FEWELLTYIDGNKPLAETDLDKIAK 429
+ +E+ TY D N+ L ETDL+ I K
Sbjct: 736 VKEGMSFEVRTYHDENEQLVETDLEIIEK 764
>gi|396488800|ref|XP_003842946.1| similar to pseudouridine synthase TruD/Pus7 [Leptosphaeria maculans
JN3]
gi|312219524|emb|CBX99467.1| similar to pseudouridine synthase TruD/Pus7 [Leptosphaeria maculans
JN3]
Length = 800
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 181/561 (32%), Positives = 261/561 (46%), Gaps = 105/561 (18%)
Query: 19 RGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVT 78
RG W + G FL F LYKENKDT E + + L P+ FGFAGTKD+R+ ++QRV+
Sbjct: 285 RGQTRWEDLGGDFLHFTLYKENKDTMEVVSFLGSKLNCGPKGFGFAGTKDRRACTSQRVS 344
Query: 79 VFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSED------ 132
V +Q A ++ + NK L +GDF Y L LG L GN FTITLR +SED
Sbjct: 345 VRRQTADRMYSFNKVLFNAAIGDFEYHTNELKLGDLKGNEFTITLRNCHFESEDSGDASQ 404
Query: 133 -------VIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL--- 182
V+ + GFINY+GLQRFGS + T +G +L+ + + AV +L
Sbjct: 405 RLRLANEVVGKAIRDFSDCGFINYYGLQRFGSFATSTDAIGRKMLQNDLEGAVADLLAYN 464
Query: 183 -------DPREG--------ERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLK 227
DP + + ++A + T L LPR AER I+Q L
Sbjct: 465 PVALTDTDPTSTFSPILISQDDRKRAQALHLWHTTGSGTAALDLLPRKFTAERNIIQHLS 524
Query: 228 KCPG---------NYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDL 278
++ AL IPR LR+MYVH+YQS +WN A R + +G++ VV GDL
Sbjct: 525 SRNSKSGQHDRKTDWQGALMTIPRNLRLMYVHAYQSLVWNVVAGHRWRTYGSQ-VVEGDL 583
Query: 279 VFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNL---------VKT 329
V +++ N ++N D + P D P G N +
Sbjct: 584 VLVSEHGSQQTTSSTN------NNNPLDQNGE----PIID-PSGTENANAAASDFERARP 632
Query: 330 VTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVY-HHLAEKDGINLTESLHNVKE-FS 387
++AA+ SG YTI D+VLP PG V YP N + Y +A + G L H+++ +
Sbjct: 633 LSAAEAGSGAYTIYDIVLPQPGFDVEYPRNKIGAFYTEFMASERGGGLDP--HDMRRSWR 690
Query: 388 ITSMTGNYRRVFQKPM-DFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNK 446
S++G YR+V +P+ E+ Y+ ++ ETDL ++ K + K EE
Sbjct: 691 EISLSGGYRKVLARPLTKVGHEVYEYVKEDEQFVETDLQRLGKGRTSGERKGEEE----- 745
Query: 447 EKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLP 506
+S E+ EA + Q K++A+ L L L
Sbjct: 746 ------------------DVSMEDGEA----------------KEEQAKKIAVVLRLQLA 771
Query: 507 SSCYATMAIRELLKTSTSVAF 527
SS YATMA+REL+K + A+
Sbjct: 772 SSQYATMALRELMKAGGAKAY 792
>gi|343425114|emb|CBQ68651.1| related to PUS7-Pseudouridine synthase [Sporisorium reilianum SRZ2]
Length = 798
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 177/578 (30%), Positives = 270/578 (46%), Gaps = 127/578 (21%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGIL--------------------------PRSFGFA 64
++ F L+K N+D QEA+G++++ L + + A
Sbjct: 258 YIHFLLHKTNRDHQEAMGMLAESLRLGGGGGGGGRGRGRGRGGFAGRGGGRPPTKDLSVA 317
Query: 65 GTKDKRSVSTQRVTVFKQR------------------ASK----------LAALNKRL-I 95
GTKDKR+V+ QRV++ + R ASK L A+ R
Sbjct: 318 GTKDKRAVTVQRVSLKRNRKTLDDVYRLVNGITADVSASKTKGKGKGRTVLDAVTARAER 377
Query: 96 GIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDV--------IKASANSLGRNGFI 147
GIR+G Y E L LGQL GN FTITLR V + D +++S + L GFI
Sbjct: 378 GIRIGHLQYAHEPLKLGQLKGNEFTITLRNVRASTTDTPAETFLASVRSSMDVLRERGFI 437
Query: 148 NYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPR--------EGERNEISKAREYY 199
NYFG+QRFG+G++PTH +G +L+ ++K A+ ++ +PR +G+ ++ +A++ Y
Sbjct: 438 NYFGMQRFGTGAIPTHHIGILILKNDFKGAIDLLFEPRTASGPDADDGDSLDLLRAKQLY 497
Query: 200 KETDDIDGTLRKLPRHLVAERAILQCLKKC---PGNYLQALKAIPRTLRMMYVHSYQSFL 256
++ ++D +P++ VAE+ IL ++ G++ A +PRTLR+MYVH+YQS++
Sbjct: 498 RD-GELDKAYYAVPKNCVAEKHILDKMRSAKWNTGDWTGAFSNVPRTLRLMYVHAYQSYV 556
Query: 257 WNHAASARVQKHGTEHVVVGDLVFC--KGDDTEKELGCVNPEFEYESSNDADDSSHLDEV 314
WN S R+ + G+ V GDLVF DD + DD L
Sbjct: 557 WNRLVSERIARFGSREAVEGDLVFADQSDDDVWHSEAAGTDADADADKDGDDDDDDLRNG 616
Query: 315 PETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGI 374
+ +KT+TAADI + +TI DV+LPLPG+ + P + E+Y + D
Sbjct: 617 TKPSPLAAWQRPIKTLTAADIAASTHTIYDVILPLPGTSIDLPRGWMCELYTSILAAD-- 674
Query: 375 NLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVN 434
+LT + + G+YRR+ KP F++ + Y D + PL TD
Sbjct: 675 SLTHAQLTSSRMPEYQLNGSYRRMLVKPRHFDYRITAYTDPDIPLTHTD----------- 723
Query: 435 IVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQG 494
E VC DPS LS ++N + H D++
Sbjct: 724 -----EEVC----LDPS--------------LSNKSN--------PESHT------DAEP 746
Query: 495 KQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
K AL L LPSS YATM +RE LK+ TS H+ +
Sbjct: 747 KFTALTLTFQLPSSSYATMLMREALKSDTSSFKHRQMT 784
>gi|320585932|gb|EFW98611.1| pseudouridine synthase [Grosmannia clavigera kw1407]
Length = 924
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 182/549 (33%), Positives = 275/549 (50%), Gaps = 75/549 (13%)
Query: 3 RNSKKRKERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFG 62
R ++ ++ DN + G N P + G +L F LYKENKDT EA+ +++M+ + +FG
Sbjct: 203 RENRDSRDSRDNQGRNAGGPNPPRK-GPYLHFTLYKENKDTMEAINHLARMMKMKSVNFG 261
Query: 63 FAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTIT 122
FAGTKD+R+ +TQRV+V A LN R I++GDF Y K + LGQ GN FTI
Sbjct: 262 FAGTKDRRAATTQRVSVKYHGHVDPAWLNSRNNNIKVGDFSYHKAPIQLGQHGGNEFTIA 321
Query: 123 LRGVVVD-------------SEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATL 169
++ V + +E ++A+ + + +NGFINYFGLQRFG+ ++ T VG +
Sbjct: 322 IKNVELARGKNCSLSHRLRMAESCVQAALDHIQQNGFINYFGLQRFGTHAIGTQEVGLKI 381
Query: 170 LRGEWKSAVKMIL--DPR------------EGERNEISKAR--EYYKETDDIDGTLRKLP 213
L G+++SA IL DP +R+EIS+AR +K D L+ LP
Sbjct: 382 LSGDFESACDYILHVDPALMARLNDPDVELAFQRDEISRARAISLFKTNGDTGPALQTLP 441
Query: 214 RHLVAERAILQCLKKCPG---NYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGT 270
+ AE AILQ L + ++ AL I R LR +Y+H+YQS +WN S R K G
Sbjct: 442 KRYGAESAILQHLSRSLASRRDFCGALLKITRGLRNLYIHAYQSLVWNWIVSRRWSKFGN 501
Query: 271 EHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTV 330
V+ GDLV + + VNP Y S D + + DE + + + +
Sbjct: 502 T-VIAGDLVLVESE--------VNPA-RYRSGMDMSEDLNQDE-------EQFYQEARVL 544
Query: 331 TAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHL---AEKDGINLTESLHNVKEFS 387
TA D SGKYTI D+VLP+PG V+YP N++ E Y E G+N KEF
Sbjct: 545 TAEDAASGKYTIFDIVLPVPGYDVLYPENEIGEFYVEFMGRPENGGLNPYRMRRPQKEF- 603
Query: 388 ITSMTGNYRRVFQK----PMDFEWELLTYIDGNKPLAETDLDKI---------AKAKLVN 434
S++G YR++ + P F + Y+D ++ + TDLD+I +A +
Sbjct: 604 --SLSGYYRKIMARFSTVPKFF---VRPYMDDSEQMHPTDLDEIRLRKAGEGQKQAGSLA 658
Query: 435 IVKEEEAVCGNKEK-DPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQ 493
V E + N E D +D + S+ +L+ + + K V +E+ D
Sbjct: 659 PVAESTSTSDNTETGDIADSTTIQDETSRRRRLTPDRPQDPPEKRVNDAWIETKL--DGS 716
Query: 494 GKQMALKLG 502
K++ L++
Sbjct: 717 SKRVKLEVA 725
>gi|320580239|gb|EFW94462.1| Pseudouridine synthase [Ogataea parapolymorpha DL-1]
Length = 612
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 168/508 (33%), Positives = 248/508 (48%), Gaps = 94/508 (18%)
Query: 30 KFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAA 89
++L LYKENK+T E GL++K L I ++ +AGTKD+R V+ Q++++ + ++
Sbjct: 177 RYLHAVLYKENKETMEVAGLLAKFLNIPVKNVKYAGTKDRRGVTVQKISLERISVERINN 236
Query: 90 LNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDV--------IKASANSL 141
LN+ L G ++G F Y E L LG L GN F IT++ V ++ E + + S+
Sbjct: 237 LNRALRGFQIGGFSYADEPLRLGDLRGNEFIITIKDVTLNGETLDIPTLEQKLAPIFESI 296
Query: 142 GRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKE 201
+ GFINYFG+QRFG+ SV TH VG LL+ EWK A ++IL +E + +AR +KE
Sbjct: 297 DKYGFINYFGMQRFGTFSVSTHEVGKCLLQSEWKKAGELILSEQEVVLPDSVEARRIWKE 356
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKK---------CPGNYLQALKAIPRTLRMMYVHSY 252
T D L+K+PR AE +IL L+ +Y +AL IPR LR+MY H+Y
Sbjct: 357 TRDASQALKKMPRRCSAEFSILSRLEHDQKGEDGEYSENSYFKALMGIPRNLRIMYGHAY 416
Query: 253 QSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLD 312
QS++WN ASAR++ G E VV GDLV E+ DD D
Sbjct: 417 QSYVWNMVASARMRLFGME-VVAGDLVIDNSVTVEQ-----------------DDDFEED 458
Query: 313 EVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMND-VAEVYHHLAEK 371
ET K VT D+++ Y+I D+VLP PG V+YP N+ + + Y + K
Sbjct: 459 VKKET------FVRAKPVTQEDVDNKTYSIHDIVLPTPGFDVLYPENETLRQTYVDVMAK 512
Query: 372 DGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAK 431
DG++ + V+EF S+ G+YR VF + ++ Y L TDL+ + +
Sbjct: 513 DGLDPFKMSRRVREF---SLAGSYRHVFGRVDGLKYYFCKYDANTDSLVRTDLELL---R 566
Query: 432 LVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGAD 491
L KEE + E
Sbjct: 567 LRQQGKEEPRLISRPE-------------------------------------------- 582
Query: 492 SQGKQMALKLGLTLPSSCYATMAIRELL 519
G ++AL + + L S YATMA+RE++
Sbjct: 583 --GSKVALVVQMQLGVSAYATMALREII 608
>gi|443695193|gb|ELT96146.1| hypothetical protein CAPTEDRAFT_160486 [Capitella teleta]
Length = 603
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 142/407 (34%), Positives = 217/407 (53%), Gaps = 42/407 (10%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
NWP + F LYKENKDT EA+ +++K+ + +F +AG KDKR+ ++Q++++ K
Sbjct: 185 NWPSTRPVYCHFVLYKENKDTMEAVNVLAKLSKLRAGNFLYAGVKDKRAKTSQKISIHKV 244
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
A+++ LNK L G+R+G+F Y K L LG GNRF I LR V S+ I+ SL
Sbjct: 245 TATRIYGLNKILRGMRVGNFEYCKNALKLGDHRGNRFNIVLRN-VTGSDAQIQEGMTSLK 303
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNE-ISKAREYYKE 201
+GFINY+G+QRFG+ VPTH +G +L+ +W+ AV +IL P+EG + I++A + E
Sbjct: 304 AHGFINYYGMQRFGTTCVPTHHIGRAILKQKWQEAVDLILQPKEGGHHPCIAEACSIWME 363
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLK-KCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
+ D L + H ER +L L N + AL IPR R MY+HSYQS++WN
Sbjct: 364 SRDAKRALEAMGNHHCLERHLLVGLNTHGTQNLVNALTTIPRYSRQMYIHSYQSYVWNCM 423
Query: 261 ASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHP 320
S R+ + G + VVGDLV ++P T++
Sbjct: 424 TSRRISQLGMK-PVVGDLV---------------------------------KIPSTENG 449
Query: 321 DGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESL 380
+ ++ +T D+ + I DVVLPLPG V P N+V++ Y L D +++
Sbjct: 450 VSSRDSIRILTPDDV--ADFHITDVVLPLPGHDVQLPGNEVSDWYLQLLAADELSMQHFK 507
Query: 381 HNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKI 427
H V+++ M G R + P + EW + Y D PL +D +++
Sbjct: 508 HKVRDY---CMPGEQRHIVVSPGELEWSTVHYNDVTLPLTLSDAERL 551
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 26/41 (63%)
Query: 492 SQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
++GK AL + TL S YATMA+RE+ K TS A TLN
Sbjct: 561 TEGKYKALVVEFTLSPSSYATMALREIFKEDTSSAHQTTLN 601
>gi|310791522|gb|EFQ27049.1| tRNA pseudouridine synthase D [Glomerella graminicola M1.001]
Length = 767
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 185/546 (33%), Positives = 274/546 (50%), Gaps = 78/546 (14%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G++L F LYKEN+DT +AL ISK L I P++ G AGTKD+R+ +TQR ++ QRA L
Sbjct: 223 GEYLHFTLYKENRDTMDALHQISKALRIKPQAIGTAGTKDRRAATTQRCSIRGQRADAL- 281
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRG-VVVDSEDV------------IK 135
+ RL G+ +GD+ Y + LG GN F I L+ +V + D+ ++
Sbjct: 282 -VRARLNGVTVGDYLYAPTPIHLGAHAGNEFVIALKDCLVAGAPDLSPADRHARIHASVE 340
Query: 136 ASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPRE--------G 187
A+ S+ G+INYFG QRFG+ +V TH VG +L+ +++ AV IL E G
Sbjct: 341 AAMASMHSLGWINYFGHQRFGTHAVGTHEVGRLILQEDFEGAVNAILAYDEVIAKRAAGG 400
Query: 188 ERNEISKARE---------YYKETDDIDGTLRKLPRHLVAERAILQCLKKCPG----NYL 234
E E + AR+ ++E D L+ LPR AE ++++ L + G +++
Sbjct: 401 EVPEQAHARDDFSRHRACMLFREGGSADDALQYLPRRFSAESSLIRHLGRSSGPSRRDFI 460
Query: 235 QALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVN 294
AL +I R LR MY+H+YQS++WNHAAS R + +G E VV GDLV E + N
Sbjct: 461 GALTSITRGLRSMYLHAYQSYVWNHAASHRWRLYG-EKVVEGDLVLVD----EPKPKTDN 515
Query: 295 PEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRV 354
E + +D DD+ D P +TA + SGKYTI DVVLP PG V
Sbjct: 516 AEAGH---DDNDDAEFTDARP--------------LTAEEAASGKYTIHDVVLPSPGHAV 558
Query: 355 IYPMNDVAEVY-HHLAEKDGINLTESLHNVKEFSITSMTGNYRR-VFQKPMDFEWELLTY 412
+YP N V E Y + + G++ + +EF S+ G+YR+ V + + +E+ Y
Sbjct: 559 VYPANAVGEFYAAFMRDNGGLDPANMIRRHREF---SLRGDYRKFVVRFLAEPGFEVRAY 615
Query: 413 IDGNKPLAETDLDKIAKAKLVNIVK-----EEEAVCGNKEKDPSDCMKQSESLSKDIKLS 467
D N+ + TD+D+I AK + E EA G +K ++ +E+ +
Sbjct: 616 EDDNEQMHPTDMDRIRAAKSGGAGRKRGREEGEAADGEGKKAKTEAAPVTETEGANGDEV 675
Query: 468 TENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLT---------LPSSCYATMAIREL 518
E E A+E K + + GLT LP S YAT+A+REL
Sbjct: 676 ME-EELPAAEETKPKEAAAEAEKGAAAADSKPAAGLTKTAVVVRFQLPKSAYATVALREL 734
Query: 519 LKTSTS 524
+ S
Sbjct: 735 MGVDES 740
>gi|322707194|gb|EFY98773.1| pseudouridine synthase TruD/Pus7, putative [Metarhizium anisopliae
ARSEF 23]
Length = 673
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 181/551 (32%), Positives = 278/551 (50%), Gaps = 74/551 (13%)
Query: 18 SRGSENWP---EQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVST 74
SRG P E +G +L F LYK+N+DT +A I+++L + P+ G+AGTKD+R+ +T
Sbjct: 131 SRGRRGQPGDDEPMGDYLHFTLYKDNRDTMDAANQIARLLRVKPQIIGYAGTKDRRASTT 190
Query: 75 QRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVI 134
QR +V QR LA LN +L GI GD+ Y ++ + LGQLLGN F ITL+ + E
Sbjct: 191 QRCSVRHQRKRALAGLNGKLWGISTGDYEYQEQPIHLGQLLGNEFVITLKNCKMAGETAA 250
Query: 135 KASANSLG--RN------------GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM 180
++ + L RN G+INYFG QRFG+ V TH VG +L ++++AV
Sbjct: 251 QSPSERLASMRNNVEPALKHMSSHGWINYFGHQRFGTHDVGTHQVGKLILGDDFEAAVNA 310
Query: 181 IL--DPREGERNEISKAREYYKETD---------------DIDGTLRKLPRHLVAERAIL 223
+L DP + E + + + D D++ ++ +PR AE IL
Sbjct: 311 LLQYDPEIAAKAEAGQVPDEPSKKDDALRHLACMLFQTGKDLNRAVKVIPRRFAAESCIL 370
Query: 224 QCLKKCPGN----YLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLV 279
+ L + N + A+ I R LR MY+H+YQS +WNHAAS R HG + V GDLV
Sbjct: 371 RHLTRMGKNSARDFAGAITHITRGLRSMYLHAYQSHVWNHAASQRYALHGNK-VAKGDLV 429
Query: 280 FCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGK 339
G E + E E D D+ + P D D + +T + SGK
Sbjct: 430 ISDG---ETQPAAA----ERERDQDGDEVIN----PVEDEEDAPLR-ARALTEEEAASGK 477
Query: 340 YTIDDVVLPLPGSRVIYPMNDVAEVYHHLA--EKDGINLTESLHNV-KEFSITSMTGNYR 396
YTI D+VLP PG VIYP N++ + Y E++G + + +EF S+ G YR
Sbjct: 478 YTIYDIVLPSPGYDVIYPDNEIGQFYQEFMGREENGSLDPHKMRRLRREF---SLPGRYR 534
Query: 397 RVFQKPM-DFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKD-----P 450
++ Q+ + + E Y D + + TDLD I AK + + G +++D P
Sbjct: 535 KLMQRFLVEPTVEFKLYEDDTEQMHPTDLDLINGAK-------KNGIQGKRKRDEDDRGP 587
Query: 451 SDCMKQSESLSK-DIKLSTENNEA-ACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSS 508
+ +K + + + K+ T N+E A + + + E+ A+ ++A+ + L SS
Sbjct: 588 AKKIKADDGEGQAEAKMETANSEQDATSSNGAEANTETELPAEP--TKIAVVVKFQLASS 645
Query: 509 CYATMAIRELL 519
YAT+ +REL+
Sbjct: 646 AYATVTLRELM 656
>gi|261191600|ref|XP_002622208.1| pseudouridine synthase TruD/Pus7 [Ajellomyces dermatitidis
SLH14081]
gi|239589974|gb|EEQ72617.1| pseudouridine synthase TruD/Pus7 [Ajellomyces dermatitidis
SLH14081]
Length = 757
Score = 241 bits (615), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 169/553 (30%), Positives = 262/553 (47%), Gaps = 104/553 (18%)
Query: 12 GDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRS 71
G +P RG W E G+ L F +YKENKDT E + +++ + + + FGFAGTKD+R
Sbjct: 251 GRDPL--RGKLGWSELGGEHLHFTIYKENKDTMEVVTFLARQMKMNAKQFGFAGTKDRRG 308
Query: 72 VSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLR------- 124
V+ QR + ++ A +L + K L +GDF Y L LG L GN F ITLR
Sbjct: 309 VTVQRASAYRIYADRLLNVGKSLRNAAVGDFEYRTNRLELGDLNGNEFIITLRDCQFPFD 368
Query: 125 -------GVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSA 177
V + ++ S L G+ NY+GLQRFG+ S T VG +L+G++K A
Sbjct: 369 LKEEGLPNAVSKATKIVSQSLRDLRERGYFNYYGLQRFGTFSTRTDTVGLKMLQGDFKGA 428
Query: 178 VKMIL--DPR-------------EGERNEISK---AR----EYYKETDDIDGTLRKLPRH 215
+ IL +P+ +G + IS AR ++ T + L KLPR
Sbjct: 429 CECILHFNPQALAASQSQTQANAQGSKTLISADDIARAEGIHIFQTTGKSNPALDKLPRK 488
Query: 216 LVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVV 275
AE I++ L + +Y AL IPR LR+MYVH+YQS +WN AAS R + +G + VV
Sbjct: 489 FSAESNIIRHLGRNKNDYFGALGTIPRGLRLMYVHAYQSLVWNFAASHRWRLYG-DKVVA 547
Query: 276 GDLVFCKGDDTEKELGCVNPEFEYESSND-------ADDSSHLDEVPETDHPDGRHNLVK 328
GDLV + +G E+++ D D ++ DE+ E +
Sbjct: 548 GDLVLINDFKEKDGVGAAAVVEEFDADGDVVVLPDAGDSANAADEMFER---------AR 598
Query: 329 TVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSI 388
+TA + SG+YTI D+VLPLPG ++YP N++ Y + + + +
Sbjct: 599 ALTAEEAASGRYTIFDIVLPLPGFDILYPDNEMTAFYKQFMGSERGGKLDPFDMRRSWKD 658
Query: 389 TSMTGNYRRVFQKPMD-FEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKE 447
S++G YR++ KP + + +E+ Y ++ +TDLD++ +++ E + G +
Sbjct: 659 ISLSGGYRKLLSKPGEAYSFEVKAYTKDDEQFVQTDLDRLKESR-----NGHEEIAGPAD 713
Query: 448 KDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPS 507
K+ +D ++A+ + L L S
Sbjct: 714 KEAAD-------------------------------------------KLAVIIKLQLGS 730
Query: 508 SCYATMAIRELLK 520
S YATMA+REL+K
Sbjct: 731 SQYATMALRELMK 743
>gi|452002198|gb|EMD94656.1| hypothetical protein COCHEDRAFT_1167696 [Cochliobolus
heterostrophus C5]
Length = 798
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 185/576 (32%), Positives = 277/576 (48%), Gaps = 109/576 (18%)
Query: 5 SKKRKERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFA 64
S+ R+++G RG +W E G++L F+LYKENKDT E +G + L + FGFA
Sbjct: 271 SRDREDQGRR----RGGLDWEELGGEYLHFNLYKENKDTMEVVGFLGSKLNCGTKGFGFA 326
Query: 65 GTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLR 124
GTKD+R+ + QRV V +Q A ++ + NK L +GDF + + LG L+GN FTITLR
Sbjct: 327 GTKDRRACTVQRVCVKRQTAQRIQSFNKVLFNAAVGDFEHSHHDIKLGDLMGNEFTITLR 386
Query: 125 GVVVDSE-------------DVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLR 171
SE DV++ + GFINY+GLQRFGS + T +G +L+
Sbjct: 387 DCHFQSEEGLDFEQRQKLANDVVRKAITDFSEKGFINYYGLQRFGSFAASTDAIGRKMLQ 446
Query: 172 GEWKSAVKMIL---------------DP----REGERNEISKAREYYKETDDIDGTLRKL 212
+ K AV+ +L DP + +RN +KA +K T + L L
Sbjct: 447 DDLKGAVEDLLAYSDVALAAAEGTSTDPAIQVSQDDRNR-AKALHIWKTTGNGSEALNLL 505
Query: 213 PRHLVAERAILQCLKKCPG---------NYLQALKAIPRTLRMMYVHSYQSFLWNHAASA 263
PR AER I+Q L ++ AL IPRTLR+MYVH+YQS +WN A
Sbjct: 506 PRKFTAERNIIQHLSSRNSKTGRHDRKTDWQGALMTIPRTLRLMYVHAYQSLVWNTVAGK 565
Query: 264 RVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPET-DHPDG 322
R +G++ VV GDLV + +KE VNP + D + LD+ ET +P G
Sbjct: 566 RWATYGSQ-VVQGDLVLVH-EHRDKE---VNPTNRTQQQPD----TSLDQDGETIINPHG 616
Query: 323 RHNLV---------KTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYH-HLAEKD 372
N + + ++AA+ SG YTI DVVLP PG V YP N + Y +A +
Sbjct: 617 TENALAPESNFERARPLSAAEAASGAYTIYDVVLPQPGFDVEYPPNPIGAFYKTFMASEQ 676
Query: 373 GINLTESLHNVKEFSITSMTGNYRRVFQKPM-DFEWELLTYIDGNKPLAETDLDKIAKAK 431
G L + + + + S++G YR+ +P+ + +E+ Y ++ +TDL+ +
Sbjct: 677 GGGL-DPQNMRRSWREVSLSGGYRKFLARPLREVGYEVHGYARVDEQFVQTDLEVLG--- 732
Query: 432 LVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGAD 491
+E+D + ++E +++ + K
Sbjct: 733 --------------RERDGAGAKAEAE-----VRVEDGEEKEEKDK-------------- 759
Query: 492 SQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAF 527
+A+ + L L SS YATMA+REL+K AF
Sbjct: 760 -----IAVVIKLQLGSSQYATMALRELMKAGGVKAF 790
>gi|406864851|gb|EKD17894.1| hypothetical protein MBM_03666 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 1596
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 177/550 (32%), Positives = 270/550 (49%), Gaps = 80/550 (14%)
Query: 3 RNSKKRKERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFG 62
+ + ++++RG G W + G++L F +YKENKDT E + ++ L I PR F
Sbjct: 878 KQNPRQQQRGQ----PTGKLGWQDLGGEYLHFTMYKENKDTMEVITYLASCLKIKPRDFA 933
Query: 63 FAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTIT 122
FAGTKD+R+V+ QRV+V +Q A LA LN L RLG+F Y K GL LG+L GN F IT
Sbjct: 934 FAGTKDRRAVTVQRVSVRRQYAKSLARLNAHLYAGRLGNFKYEKHGLELGELTGNHFHIT 993
Query: 123 LRGVVVDSED-------------VIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATL 169
LR + V+ + L ++GFINYFGLQRFG+ + T +G +
Sbjct: 994 LRDCHFGDDQNWTTELKLEHGNKVVGQAVKHLQQHGFINYFGLQRFGTFGIGTDEIGLQI 1053
Query: 170 LRGEWKSAVKMIL--------------DPREGER---------NEISKAREYYKETDDID 206
L+G++K AV IL +P G+R I R K++D
Sbjct: 1054 LKGDFKGAVDAILTYSDEVFGPPKDFSEPEYGDRVSQYDLDRAQAIIAFRNGGKKSD--- 1110
Query: 207 GTLRKLPRHLVAERAILQCL--KKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASAR 264
L +PR E A+++ L + C +Y A+ +I R LR MY+H+YQS +WN AS R
Sbjct: 1111 -VLEIMPRKFSGEIAVMRHLMTRNCHNDYEGAIMSIHRNLRSMYLHAYQSLVWNTVASER 1169
Query: 265 VQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRH 324
+HG + VV GDLV + P E + S + + D+ + D +
Sbjct: 1170 WARHGNK-VVEGDLVLVVPE--------AAPADEVDESGEVVVHAAADDTAISR--DDVY 1218
Query: 325 NLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHL---AEKDGINLTESLH 381
+ +TA + SGKY I D+VLPLPG V YP N + + Y GI+
Sbjct: 1219 QRARPLTAEEAASGKYNIFDIVLPLPGYDVNYPANAIGDFYKTFMAGPRGGGIDPGNMRR 1278
Query: 382 NVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAK------LVNI 435
+ K+F S++G+YR++ + D +EL YI+ + L ETD K+ K++ N
Sbjct: 1279 SNKDF---SLSGSYRKLMAEVKDCSFELKVYINSLEELVETDWQKLQKSRGEDPMAPRNF 1335
Query: 436 VKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVK-----QPHVESVCGA 490
+EE N + +++E S+ IK+ + +A + K P ++ C A
Sbjct: 1336 YQEERGSGPNNKN-----ARKAEIRSEAIKMKDQYKNSAALQAWKALPDAMPGLDKAC-A 1389
Query: 491 DSQGKQMALK 500
D+ ++A +
Sbjct: 1390 DAAALKVAQR 1399
>gi|440473099|gb|ELQ41921.1| tRNA pseudouridine synthase D [Magnaporthe oryzae Y34]
gi|440478276|gb|ELQ59118.1| tRNA pseudouridine synthase D [Magnaporthe oryzae P131]
Length = 943
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 147/433 (33%), Positives = 237/433 (54%), Gaps = 54/433 (12%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
++L F LYKENKDT +A+ I+++L I +FGFAGTKD+R+ + QRV+V+ + +L
Sbjct: 247 AQYLHFTLYKENKDTMDAINHIARLLKIKASNFGFAGTKDRRAATVQRVSVWNKDIKELN 306
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGV-------------VVDSEDVIK 135
LN ++ GIR+GDF Y K+ + LGQ GN F I ++ V + +E+ ++
Sbjct: 307 TLNDKMSGIRVGDFSYQKKPMQLGQHGGNEFVIAIKNVESPRLKDYSITHRLRVTEECVQ 366
Query: 136 ASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-------- 187
+ +S+ GFINYFGLQRFG+ ++ T +G +LR ++ SAV IL E
Sbjct: 367 QALDSIANRGFINYFGLQRFGTHAIGTQEIGMRILREDFVSAVNGILHVDEELSVAVAEG 426
Query: 188 ------ERNEISKARE--YYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKA 239
R+E +AR ++ + D LR LP+ AE +++ L + P ++ AL
Sbjct: 427 SNDGRFHRDEFDRARAITMWRMSRKSDAALRILPKKYNAENTLIKHLGQAPNDFTGALMH 486
Query: 240 IPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTE-KELGCVNPEFE 298
I R LRM+Y+H+YQSF+WN AAS R +G + ++ GDLV + D++ + G V
Sbjct: 487 ITRGLRMLYIHAYQSFVWNFAASKRWALYG-DKIIAGDLVLVQADESPITQRGPVE---- 541
Query: 299 YESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPM 358
D S +++ E + RH +T ++ SG++TI DVVLP PG VIYP+
Sbjct: 542 -------DMSEEVNQEEEEFYQRARH-----ITEKEVASGRFTIFDVVLPAPGFDVIYPL 589
Query: 359 NDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQK----PMDFEWELLTYID 414
N++ + Y +K+ + + ++ SM+G+YR++ K PM + + Y++
Sbjct: 590 NEIGQFYVDFMKKEENGRLDPYNMRRKHREYSMSGHYRKLMAKFTATPM---FAIRPYVN 646
Query: 415 GNKPLAETDLDKI 427
+ + TD D I
Sbjct: 647 DEEQMHPTDRDLI 659
>gi|70996570|ref|XP_753040.1| pseudouridine synthase TruD/Pus7 [Aspergillus fumigatus Af293]
gi|66850675|gb|EAL91002.1| pseudouridine synthase TruD/Pus7, putative [Aspergillus fumigatus
Af293]
Length = 729
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 171/534 (32%), Positives = 260/534 (48%), Gaps = 100/534 (18%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
N+ E G +L F +YKENKDT E + +++ L + PRSF FAGTKD+R V+ QR V +
Sbjct: 246 NFEELGGPYLHFTIYKENKDTMEVISFLARSLKMAPRSFQFAGTKDRRGVTVQRACVSRV 305
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVV------DSEDVIKA 136
A +LA LN L +GD+ Y + GL LG L GN F ITLR ++ + ED +
Sbjct: 306 FADRLAKLNSALRNSAVGDYEYCRHGLELGDLKGNEFVITLRECIIPGVDLQNPEDAVAT 365
Query: 137 SANSLG---RN----GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILD------ 183
+ +G RN G+ NY+GLQRFG+ + T +VG +L+G++K A IL
Sbjct: 366 AKEFVGSALRNLRERGYFNYYGLQRFGTFATRTDMVGVKMLQGDFKGACDAILHYSPHIL 425
Query: 184 --PREGERNEI--------SKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNY 233
+EG + + ++A ++ T + + KLPR AE +++ L + +Y
Sbjct: 426 AAAQEGNSSSMISSDDKARAEAIHIFQTTGKVSEAVEKLPRKFSAENNLIRHLGRSQNDY 485
Query: 234 LQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCV 293
L AL+ IPR LR+MYVH+YQS +WN A R + +G + VV GDLV + +++
Sbjct: 486 LGALQTIPRNLRLMYVHAYQSLVWNFAVGERWRLYG-DKVVEGDLVLIH--EHREKVEET 542
Query: 294 NPEFEYESSND------ADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVL 347
PE E ++ + A DS++ E + +TA + SG+Y+I DVVL
Sbjct: 543 GPEAEVDADGEVVVKPAAHDSAYSAE--------DMFERARPLTAEEAASGEYSIFDVVL 594
Query: 348 PLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQK-PMDFE 406
PLPG V+YP N++ Y + + +++ S++G YR+V + D+
Sbjct: 595 PLPGFDVVYPANEMTSFYKRFMGSEQGGGLDPFDMRRKWKDISLSGGYRKVLSRMGADYS 654
Query: 407 WELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKL 466
+ Y ++ +TDLD++
Sbjct: 655 VHVKLYSQDDEQFVQTDLDRL--------------------------------------- 675
Query: 467 STENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLK 520
EAA +ES ADS K +A+ L L SS YATMA+REL+K
Sbjct: 676 --NGKEAA---------IES--NADSADK-IAVILKFQLGSSQYATMALRELMK 715
>gi|347836729|emb|CCD51301.1| hypothetical protein [Botryotinia fuckeliana]
Length = 1084
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 161/449 (35%), Positives = 240/449 (53%), Gaps = 53/449 (11%)
Query: 19 RGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVT 78
+G W E G++L F LYKENKDT E + L+SK+ P+ F +AGTKD+R+ + QRV+
Sbjct: 331 KGKVGWEELGGEYLHFTLYKENKDTMETINLLSKLTRTGPKDFAYAGTKDRRAATAQRVS 390
Query: 79 VFKQRASKLAALNKRLIG-IRLGDFCYVKEGLLLGQLLGNRFTITLR----GVVVDSEDV 133
F+ + +A LNK L R+GDF Y K L LG L GN FTITLR G D +D
Sbjct: 391 AFRHHLTSMAELNKTLRNRCRVGDFKYEKYPLRLGDLEGNVFTITLRDCHFGDDTDMDDA 450
Query: 134 IKASA---------NSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-- 182
KA + L GF+NYFGLQRFG+ ++ TH +G +L+G +K AV +L
Sbjct: 451 AKAQSAEKVVGDAVKHLQTRGFLNYFGLQRFGTFAIGTHEIGKLILKGNFKGAVDSLLAF 510
Query: 183 ------------DPREGERNEISKAREYYK--ETDDIDGTLRKLPRHLVAERAILQCL-- 226
D R+++++A +K ET G LP AERA++Q +
Sbjct: 511 NEDALAAAQSGQDSSSIGRDDMARALAIHKFRETGRNSGGRDSLPPRFSAERAVIQHMSS 570
Query: 227 KKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFC--KGD 284
++ +Y A+ +I R LR MYVHSYQSF+WN AS R + +G + V+ GDLV K
Sbjct: 571 ERKRNDYAGAILSISRHLRTMYVHSYQSFIWNVVASRRWECYG-DKVIEGDLVLVESKAP 629
Query: 285 DTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDD 344
+ + E+ + S DA +S DEV + ++A + +SG + I D
Sbjct: 630 EQKDEVDENGEIVIHASGGDAALTS--DEV---------FQRARCLSAEEADSGAFAIFD 678
Query: 345 VVLPLPGSRVIYPMNDVAEVYHHLAEKD---GINLTESLHNVKEFSITSMTGNYRRVFQK 401
+VLP+PG + YP N++ + Y + G++ + +K+F S++G+YR + +
Sbjct: 679 IVLPMPGYDIEYPNNEIGDFYKEFMASEQGGGLDPADMRRKIKDF---SLSGSYRHLIGR 735
Query: 402 PMD-FEWELLTYIDGNKPLAETDLDKIAK 429
+ +E+ TY D N+ L ETDL+ I K
Sbjct: 736 VKEGMSFEVRTYHDENEQLVETDLEIIEK 764
>gi|159131776|gb|EDP56889.1| pseudouridine synthase TruD/Pus7, putative [Aspergillus fumigatus
A1163]
Length = 729
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 171/534 (32%), Positives = 260/534 (48%), Gaps = 100/534 (18%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
N+ E G +L F +YKENKDT E + +++ L + PRSF FAGTKD+R V+ QR V +
Sbjct: 246 NFEELGGPYLHFTIYKENKDTMEVVSFLARSLKMAPRSFQFAGTKDRRGVTVQRACVSRV 305
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVV------DSEDVIKA 136
A +LA LN L +GD+ Y + GL LG L GN F ITLR ++ + ED +
Sbjct: 306 FADRLAKLNSALRNSAVGDYEYCRHGLELGDLKGNEFVITLRECIIPGVDLQNPEDAVAT 365
Query: 137 SANSLG---RN----GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILD------ 183
+ +G RN G+ NY+GLQRFG+ + T +VG +L+G++K A IL
Sbjct: 366 AKEFVGSALRNLRERGYFNYYGLQRFGTFATRTDMVGVKMLQGDFKGACDAILHYSPHIL 425
Query: 184 --PREGERNEI--------SKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNY 233
+EG + + ++A ++ T + + KLPR AE +++ L + +Y
Sbjct: 426 AAAQEGNSSSMISSDDKARAEAIHIFQTTGKVSEAVEKLPRKFSAENNLIRHLGRSQNDY 485
Query: 234 LQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCV 293
L AL+ IPR LR+MYVH+YQS +WN A R + +G + VV GDLV + +++
Sbjct: 486 LGALQTIPRNLRLMYVHAYQSLVWNFAVGERWRLYG-DKVVEGDLVLIH--EHREKVEET 542
Query: 294 NPEFEYESSND------ADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVL 347
PE E ++ + A DS++ E + +TA + SG+Y+I DVVL
Sbjct: 543 GPEAEVDADGEVVVKPAAHDSAYSAE--------DMFERARPLTAEEAASGEYSIFDVVL 594
Query: 348 PLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQK-PMDFE 406
PLPG V+YP N++ Y + + +++ S++G YR+V + D+
Sbjct: 595 PLPGFDVVYPANEMTSFYKRFMGSEQGGGLDPFDMRRKWKDISLSGGYRKVLSRMGADYS 654
Query: 407 WELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKL 466
+ Y ++ +TDLD++
Sbjct: 655 VHVKLYSQDDEQFVQTDLDRL--------------------------------------- 675
Query: 467 STENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLK 520
EAA +ES ADS K +A+ L L SS YATMA+REL+K
Sbjct: 676 --NGKEAA---------IES--NADSADK-IAVILKFQLGSSQYATMALRELMK 715
>gi|389638896|ref|XP_003717081.1| tRNA pseudouridine synthase D [Magnaporthe oryzae 70-15]
gi|351642900|gb|EHA50762.1| tRNA pseudouridine synthase D [Magnaporthe oryzae 70-15]
Length = 933
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 147/433 (33%), Positives = 237/433 (54%), Gaps = 54/433 (12%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
++L F LYKENKDT +A+ I+++L I +FGFAGTKD+R+ + QRV+V+ + +L
Sbjct: 237 AQYLHFTLYKENKDTMDAINHIARLLKIKASNFGFAGTKDRRAATVQRVSVWNKDIKELN 296
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGV-------------VVDSEDVIK 135
LN ++ GIR+GDF Y K+ + LGQ GN F I ++ V + +E+ ++
Sbjct: 297 TLNDKMSGIRVGDFSYQKKPMQLGQHGGNEFVIAIKNVESPRLKDYSITHRLRVTEECVQ 356
Query: 136 ASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-------- 187
+ +S+ GFINYFGLQRFG+ ++ T +G +LR ++ SAV IL E
Sbjct: 357 QALDSIANRGFINYFGLQRFGTHAIGTQEIGMRILREDFVSAVNGILHVDEELSVAVAEG 416
Query: 188 ------ERNEISKARE--YYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKA 239
R+E +AR ++ + D LR LP+ AE +++ L + P ++ AL
Sbjct: 417 SNDGRFHRDEFDRARAITMWRMSRKSDAALRILPKKYNAENTLIKHLGQAPNDFTGALMH 476
Query: 240 IPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTE-KELGCVNPEFE 298
I R LRM+Y+H+YQSF+WN AAS R +G + ++ GDLV + D++ + G V
Sbjct: 477 ITRGLRMLYIHAYQSFVWNFAASKRWALYG-DKIIAGDLVLVQADESPITQRGPVE---- 531
Query: 299 YESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPM 358
D S +++ E + RH +T ++ SG++TI DVVLP PG VIYP+
Sbjct: 532 -------DMSEEVNQEEEEFYQRARH-----ITEKEVASGRFTIFDVVLPAPGFDVIYPL 579
Query: 359 NDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQK----PMDFEWELLTYID 414
N++ + Y +K+ + + ++ SM+G+YR++ K PM + + Y++
Sbjct: 580 NEIGQFYVDFMKKEENGRLDPYNMRRKHREYSMSGHYRKLMAKFTATPM---FAIRPYVN 636
Query: 415 GNKPLAETDLDKI 427
+ + TD D I
Sbjct: 637 DEEQMHPTDRDLI 649
>gi|226295084|gb|EEH50504.1| pseudouridine synthase [Paracoccidioides brasiliensis Pb18]
Length = 712
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 179/546 (32%), Positives = 265/546 (48%), Gaps = 93/546 (17%)
Query: 17 DSR-GSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQ 75
DSR G W E G+ L F +YKENKDT E + I++ + I + GFAGTKD+R V+ Q
Sbjct: 204 DSRKGKLGWNELGGEHLHFTIYKENKDTMEVISFIARQMKINAKQLGFAGTKDRRGVTVQ 263
Query: 76 RVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLR----------- 124
R + ++ A +L + K L +GDF Y + L LG L GN F ITLR
Sbjct: 264 RASAYRIYADRLLNVGKSLRNAAVGDFEYHQHRLELGDLNGNEFIITLRDCQFPFNPEEK 323
Query: 125 --GVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL 182
V + +++ S + L + G+ NY+GLQRFG+ S T +G +L+ ++K A IL
Sbjct: 324 GANSVARATEIVSRSLHDLRQRGYFNYYGLQRFGTFSTRTDTIGLKMLQEDYKGACDCIL 383
Query: 183 --------------DPREG------ERNEISKAREY--YKETDDIDGTLRKLPRHLVAER 220
P ++I++A ++ T I+ L KLPR AE
Sbjct: 384 HFNPLALSASQSQSQPESPASKTLISADDIARAEAIHAFQTTGKINVALNKLPRKFSAES 443
Query: 221 AILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVF 280
I++ L + +Y AL IPR+LR+MYVH+YQS +WN A R + +G E VV GDLV
Sbjct: 444 NIIRHLGRHKNDYFGALGTIPRSLRLMYVHAYQSLVWNFAVGERWRLYG-EKVVAGDLVL 502
Query: 281 CKGDDTEKELG-CVNPEFEYESSNDA---DDSSHLDEVPETDHPDGRHNLVKTVTAADIN 336
D EKE E+++ D D+ D P D L + ++A +
Sbjct: 503 VN-DFKEKEGARAAGGTEEFDADGDVVILPDAG--DSAPAADM----FELARALSAEEAA 555
Query: 337 SGKYTIDDVVLPLPGSRVIYPMNDVAEVY-HHLAEKDGINLTESLHNVKEFSITSMTGNY 395
SGKY+I D+VLPLPG ++YP N++ Y + K G L + + + S++G Y
Sbjct: 556 SGKYSIFDIVLPLPGFGILYPDNEMKTFYKEFMGSKRGGKL-DPFDMRRSWKDISLSGGY 614
Query: 396 RRVFQKP-MDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCM 454
R++ KP D+ +E+ Y ++ +TDL+K+ A +N G K +PSD
Sbjct: 615 RKLLSKPGPDYSFEVKAYAGDDEQFVQTDLEKLNMA--LN--------GGKKIAEPSDAT 664
Query: 455 KQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMA 514
+ DIK + ++A+ L L L SS YATMA
Sbjct: 665 E-----GVDIKTA---------------------------DKLAVVLKLQLGSSQYATMA 692
Query: 515 IRELLK 520
+REL+K
Sbjct: 693 LRELMK 698
>gi|239612618|gb|EEQ89605.1| pseudouridine synthase TruD/Pus7 [Ajellomyces dermatitidis ER-3]
Length = 757
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 169/553 (30%), Positives = 261/553 (47%), Gaps = 104/553 (18%)
Query: 12 GDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRS 71
G +P RG W E G+ L F +YKENKDT E + +++ + + + FGFAGTKD+R
Sbjct: 251 GRDPL--RGKLGWSELGGEHLHFTIYKENKDTMEVVTFLARQMKMNAKQFGFAGTKDRRG 308
Query: 72 VSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLR------- 124
V+ QR + ++ A +L + K L +GDF Y L LG L GN F ITLR
Sbjct: 309 VTVQRASAYRIYADRLLNVGKSLRNAAVGDFEYRTNRLELGDLNGNEFIITLRDCQFPFD 368
Query: 125 -------GVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSA 177
V + ++ S L G+ NY+GLQRFG+ S T VG +L+G++K A
Sbjct: 369 LKEEGLPNAVSKATKIVSQSLRDLRERGYFNYYGLQRFGTFSTRTDTVGLKMLQGDFKGA 428
Query: 178 VKMIL--DPR-------------EGERNEISK---AR----EYYKETDDIDGTLRKLPRH 215
+ IL +P+ +G + IS AR ++ T + L KLPR
Sbjct: 429 CECILHFNPQALAASQSQTQANAQGSKTLISADDIARAEGIHIFQTTGKSNPALDKLPRK 488
Query: 216 LVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVV 275
AE I++ L + +Y AL IPR LR+MYVH+YQS +WN AAS R + +G + VV
Sbjct: 489 FSAESNIIRHLGRNKNDYFGALGTIPRGLRLMYVHAYQSLVWNFAASHRWRLYG-DKVVA 547
Query: 276 GDLVFCKGDDTEKELGCVNPEFEYESSND-------ADDSSHLDEVPETDHPDGRHNLVK 328
GDLV + +G E+++ D D ++ DE+ E +
Sbjct: 548 GDLVLINDFKEKDGVGAAAVVEEFDADGDVVVLPDAGDGANAADEMFER---------AR 598
Query: 329 TVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSI 388
+TA + SG+YTI D+VLPLPG ++YP N++ Y + + + +
Sbjct: 599 ALTAEEAASGRYTIFDIVLPLPGFDILYPDNEMTTFYKQFMGSERGGKLDPFDMRRSWKD 658
Query: 389 TSMTGNYRRVFQKPMD-FEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKE 447
S++G YR++ KP + + +E+ Y ++ +TDLD++ ++ E + G +
Sbjct: 659 ISLSGGYRKLLSKPGEAYSFEVKAYTKDDEQFVQTDLDRLKES-----WNGHEEIAGPAD 713
Query: 448 KDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPS 507
K+ +D ++A+ + L L S
Sbjct: 714 KEAAD-------------------------------------------KLAVIIKLQLGS 730
Query: 508 SCYATMAIRELLK 520
S YATMA+REL+K
Sbjct: 731 SQYATMALRELMK 743
>gi|121700671|ref|XP_001268600.1| pseudouridine synthase TruD/Pus7, putative [Aspergillus clavatus
NRRL 1]
gi|119396743|gb|EAW07174.1| pseudouridine synthase TruD/Pus7, putative [Aspergillus clavatus
NRRL 1]
Length = 741
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 164/533 (30%), Positives = 251/533 (47%), Gaps = 93/533 (17%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
NW E G +L F +YKENKDT E + +++ + + PRSF FAGTKD+R V+ QR V +
Sbjct: 250 NWDELGGPYLHFTVYKENKDTMEVISFLARQMKMAPRSFQFAGTKDRRGVTVQRACVTRV 309
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLR-------------GVVVD 129
A +LA LN L +GD+ Y + GL LG L GN F +TLR V
Sbjct: 310 FADRLAKLNPTLRNAAIGDYEYRRVGLELGDLKGNEFVVTLRECDIPGIDLQDREAAVTK 369
Query: 130 SEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILD------ 183
+++ + + +L G+ NY+GLQRFG+ + T +G +L+ ++K A I+
Sbjct: 370 AKEFVGTALRNLRERGYFNYYGLQRFGTFATRTDTIGVKMLQEDFKGACDAIMHYSPHVL 429
Query: 184 --PREGERNEI-----SKAR----EYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGN 232
+EGE + KAR ++ T + + KLPR AE +++ L + +
Sbjct: 430 AAAQEGENSTAMIGTDDKARAEAIHLFQTTGQVSEAVEKLPRKFSAENNLIRHLGRSKND 489
Query: 233 YLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGC 292
YL AL+ IPR LR+MYVH+YQS +WN A R + +G + VV GDLV + E G
Sbjct: 490 YLGALQTIPRNLRLMYVHAYQSLVWNFAVGERWRLYG-DKVVEGDLVLIHEHREKTETGG 548
Query: 293 VNPEFEYESSNDADDSSHLDEVPETD----HPDGRHNLVKTVTAADINSGKYTIDDVVLP 348
E S DAD + VP + + + +TA + SGKY+I D+VLP
Sbjct: 549 A----EANSGVDADGEVII--VPSAEDSAYSAEDMFERARALTAEEAASGKYSIFDIVLP 602
Query: 349 LPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQK-PMDFEW 407
LPG V+YP N + + Y + + +++ S++G+YR+V + D+
Sbjct: 603 LPGFDVVYPANAMTDFYKRFMGSEQGGGLDPFDMRRKWKDISLSGSYRKVLSRMGTDYAV 662
Query: 408 ELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLS 467
++ Y ++ +TDLD++ K K + A G+K
Sbjct: 663 DVKLYSQDDEQFVQTDLDQL-KGKAADSASGSGAEAGDK--------------------- 700
Query: 468 TENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLK 520
+A+ L L SS YATMA+REL++
Sbjct: 701 -----------------------------IAVVLKFQLGSSQYATMALRELMR 724
>gi|402083805|gb|EJT78823.1| tRNA pseudouridine synthase D [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 944
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 144/434 (33%), Positives = 239/434 (55%), Gaps = 58/434 (13%)
Query: 30 KFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAA 89
++L F LYKENKDT +A+ I++++ + +FGFAGTKD+R+ + QRV+V+ + S L +
Sbjct: 243 QYLHFTLYKENKDTMDAINHIARLIKVKASNFGFAGTKDRRAATVQRVSVWNKDISDLVS 302
Query: 90 LNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVD-------------SEDVIKA 136
LN ++ GIR+GDF + K+ + LGQ GN+F I ++ V + +E ++
Sbjct: 303 LNDKMTGIRVGDFAFQKKPMQLGQHGGNQFVIAIKNVQLTRGGNFSIAHRLRMTEYCVQF 362
Query: 137 SANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL--DP---------- 184
+ +++ R GFINYFGLQRFG+ ++ T +G +LR ++ +AV IL DP
Sbjct: 363 ALDNIVRTGFINYFGLQRFGTHAIGTQEIGMKILREDFTAAVDGILHVDPDLSLAIASGN 422
Query: 185 --REGERNEISKAR--EYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAI 240
++E +AR +K + + R LP+ AE ++++ L K P ++ A+ +I
Sbjct: 423 SEARFHKDEFDRARAIAIWKMSGKAEAATRVLPKKYAAENSLIRHLGKAPNDHCGAILSI 482
Query: 241 PRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYE 300
R LR +Y H+YQS++WN+AAS R ++G + VVVGDLV + +++ P +
Sbjct: 483 TRGLRQLYCHAYQSYIWNYAASKRWSRYG-DQVVVGDLVMVQPNES--------PIAQRS 533
Query: 301 SSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMND 360
+ D + + +E + + + +T ++ SG+YTI DVVLP PG VIYP ND
Sbjct: 534 PAEDMSEDVNQEE-------EEFYQRARPLTKDEVASGRYTIFDVVLPAPGFDVIYPAND 586
Query: 361 VAEVYHHL---AEKDGINLTESLHNVKEFSITSMTGNYRRVFQK----PMDFEWELLTYI 413
+ Y E G+N E +EF S++G+YR++ + PM + + Y
Sbjct: 587 IGAFYSDFMARQENGGLNPYEMRRRQREF---SLSGHYRKLMARFTATPM---FAVRPYT 640
Query: 414 DGNKPLAETDLDKI 427
+ + + TD D I
Sbjct: 641 EDEEQMHPTDRDLI 654
>gi|171686904|ref|XP_001908393.1| hypothetical protein [Podospora anserina S mat+]
gi|170943413|emb|CAP69066.1| unnamed protein product [Podospora anserina S mat+]
Length = 870
Score = 238 bits (608), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 150/451 (33%), Positives = 240/451 (53%), Gaps = 76/451 (16%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G++L F +YKENKDT +A+ I+++L I +FGFAGTKD+R+ + QR++V QRAS L
Sbjct: 88 GEYLHFTMYKENKDTMDAINTIARLLKIKATNFGFAGTKDRRAATVQRISVRYQRASNLT 147
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGV---------VVDSEDVIKASAN 139
LN R+ +++GDF + ++ L LGQ GN F ITL+ V +I+ +
Sbjct: 148 WLNTRIPNVKVGDFVHKEQPLSLGQHGGNEFIITLKNCSPLGGSECSVAQRMKMIQQTVE 207
Query: 140 S----LGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL------------- 182
L NG+INYFGLQRFG+ ++ THL+G +L+G+++ + IL
Sbjct: 208 CGLAYLKHNGYINYFGLQRFGTHTIGTHLLGMKILQGDFEGVIDAILHVDDHYIQEAFNN 267
Query: 183 -----------DPREGERNEISKARE----------YYKETDDIDGTLRKLPRHLVAERA 221
D G N S A +K + + + LP+ +E A
Sbjct: 268 VGSSHGTKRDFDHSHGNGNNASTANRDDYDRARAITIWKTSKNASKAVEGLPKRFSSEIA 327
Query: 222 ILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFC 281
+++ L K P ++ A+ +I R++RMMY+H++QS++WNHAAS R K+G V+ GD+V
Sbjct: 328 LIRHLGKNPKDFTGAILSITRSMRMMYIHAFQSYVWNHAASRRWSKYGA-RVIEGDIVL- 385
Query: 282 KGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYT 341
+D E + + E+++ +D ++ +H+ P+ VTA D+ + KYT
Sbjct: 386 -NEDVEDATTRPSEDDEFDTYDD-NEVAHV--FPQ----------AHVVTAEDLAAEKYT 431
Query: 342 IDDVVLPLPGSRVIYPMNDVAEVYHHLAEKD---GINLTESLHNVKEFSITSMTGNYR-- 396
I DVVLP PG V+YP N++ E Y K+ G+N + +EF S++G+YR
Sbjct: 432 IFDVVLPTPGYDVVYPQNEIGEFYVEFMGKEENGGLNPYDMRRKNREF---SLSGSYRAL 488
Query: 397 --RVFQKPMDFEWELLTYIDGNKPLAETDLD 425
R +P ++ + Y+D + + TDLD
Sbjct: 489 MGRFITEP---QYAIRAYVDDTEQMYPTDLD 516
>gi|71019885|ref|XP_760173.1| hypothetical protein UM04026.1 [Ustilago maydis 521]
gi|46099890|gb|EAK85123.1| hypothetical protein UM04026.1 [Ustilago maydis 521]
Length = 811
Score = 238 bits (608), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 157/505 (31%), Positives = 254/505 (50%), Gaps = 82/505 (16%)
Query: 11 RGDNPFDSRGSENWPEQLGK---FLRFHLYKENKDTQEALGLISKMLGIL---------- 57
R N D R + E+ ++ F L+K N+D QEA+G++++ L +
Sbjct: 246 RWANRSDRRSGDGLSEEAASSPPYIHFLLHKTNRDHQEAMGMLAESLRLGGGGAGRGRGR 305
Query: 58 --------------PRSFGFAGTKDKRSVSTQRVTVFKQR------------------AS 85
+ AGTKDKR+V+ QRV++ + R AS
Sbjct: 306 GRGGFAGRGGGRPPTKDLAVAGTKDKRAVTVQRVSLRRNRKTLEDVYRLVNGINADVSAS 365
Query: 86 KL-----------AALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDV- 133
K+ A ++ GIR+G Y E L LGQL GN FTITLR V S
Sbjct: 366 KVKGKGKGRTVLDAVTSRADRGIRIGHLEYAHEPLKLGQLKGNEFTITLRNVRPSSSSAS 425
Query: 134 --------IKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPR 185
++ S + + GFINYFG+QRFG+G++PTH +G +LR ++K+A+ ++ +PR
Sbjct: 426 VDKAFLASVRRSMDVIRDRGFINYFGMQRFGTGAIPTHHIGILVLRNDFKTAIDLLFEPR 485
Query: 186 --------EGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKC---PGNYL 234
+G+ ++ KA++ YKE ++D +P++ VAE+ IL ++ G+++
Sbjct: 486 PPSSPDADDGDSLDLLKAKQLYKE-GELDKAYSVIPKNCVAEKHILDKMRSSRWNKGDWM 544
Query: 235 QALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFC--KGDDTEKELGC 292
A IPRTLR+MYVH+YQS++WN S RV K G+ V GDLVF + +D +E+G
Sbjct: 545 GAFGNIPRTLRLMYVHAYQSYVWNRLVSERVAKFGSLQAVEGDLVFADKRDEDGWQEVGG 604
Query: 293 VNPEFEYESSNDADDSSHLDEVPETDHPDGR-HNLVKTVTAADINSGKYTIDDVVLPLPG 351
+ E + +A+D L +P +K +T D+ S +++I DV+LPLPG
Sbjct: 605 EDEERPNGTDGEAEDDDDLRNGGGKINPLATWQRPIKVLTTCDVQSDQWSIYDVILPLPG 664
Query: 352 SRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLT 411
S + P+ ++++Y + D +LT + +F + G+YR + KP + + + +
Sbjct: 665 SSIDLPVGWMSDLYTSILTND--SLTHTQLTCSKFPDYQLNGSYRPMLVKPRNLTYSITS 722
Query: 412 YIDGNKPLAETDLDKIAKAKLVNIV 436
Y D + PL TD + A L N +
Sbjct: 723 YTDPDIPLTHTDEELCLDASLSNSI 747
>gi|336271437|ref|XP_003350477.1| hypothetical protein SMAC_02190 [Sordaria macrospora k-hell]
Length = 894
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 153/455 (33%), Positives = 238/455 (52%), Gaps = 69/455 (15%)
Query: 11 RGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKR 70
R +N S+++ + G++L F +YKENKDT +A+ I+++L + +FGFAGTKD+R
Sbjct: 180 RANNSRSGDKSKSFTQLGGEYLHFTMYKENKDTMDAVNTIARLLKVKATNFGFAGTKDRR 239
Query: 71 SVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLR------ 124
+ + QR++V++QRAS L LN RL I++GDF + E L LGQ GN F ITL+
Sbjct: 240 AGTVQRISVYRQRASNLIWLNTRLPNIKVGDFNHANEPLQLGQHGGNEFVITLKNCQPLG 299
Query: 125 --GVVVDS-----EDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSA 177
G V+ + ++ L R+G+INY+GLQRFG+ ++ THL+G +L+ +++
Sbjct: 300 GAGCSVNQRVRKLREAVEFGLAYLNRHGYINYYGLQRFGTYAIGTHLLGMKVLKEDYEGV 359
Query: 178 VKMIL-----------DPREGE---RNEISKAREYY---------KETDDIDGTLRKLPR 214
+ IL D E E N+ +R+ Y + T + L LP+
Sbjct: 360 LDDILHVEDHFLQEAFDLEEQEPVHTNDFHNSRDDYNRAKAITIWRTTRNAQKALAILPK 419
Query: 215 HLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVV 274
+E AI++ L +++ AL +I R +RMMY+H+YQSF+WNH AS R +G V+
Sbjct: 420 RFSSEAAIIRHLGNNSRDFMGALLSITRGMRMMYIHAYQSFVWNHMASKRWSMYGPA-VI 478
Query: 275 VGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAAD 334
GDLV K D + + + Y + + +T D
Sbjct: 479 EGDLVLVKNDQSAADADAEEDDNCYAQA-------------------------RALTKED 513
Query: 335 INSGKYTIDDVVLPLPGSRVIYPMNDVAEVY---HHLAEKDGINLTESLHNVKEFSITSM 391
I +GKYTI DVVLP PG VIYP N + E Y + E G++ + KEF S+
Sbjct: 514 IETGKYTIFDVVLPTPGYDVIYPRNAIGEAYVTFMKMEENGGLDPYDMRRRQKEF---SL 570
Query: 392 TGNYRRVFQK-PMDFEWELLTYIDGNKPLAETDLD 425
+GNYR + + ++ ++ + Y D + + TDLD
Sbjct: 571 SGNYRHLLGRFIVEPQYAIRVYNDDTEQMYPTDLD 605
>gi|380090142|emb|CCC11968.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 901
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 153/455 (33%), Positives = 238/455 (52%), Gaps = 69/455 (15%)
Query: 11 RGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKR 70
R +N S+++ + G++L F +YKENKDT +A+ I+++L + +FGFAGTKD+R
Sbjct: 187 RANNSRSGDKSKSFTQLGGEYLHFTMYKENKDTMDAVNTIARLLKVKATNFGFAGTKDRR 246
Query: 71 SVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLR------ 124
+ + QR++V++QRAS L LN RL I++GDF + E L LGQ GN F ITL+
Sbjct: 247 AGTVQRISVYRQRASNLIWLNTRLPNIKVGDFNHANEPLQLGQHGGNEFVITLKNCQPLG 306
Query: 125 --GVVVDS-----EDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSA 177
G V+ + ++ L R+G+INY+GLQRFG+ ++ THL+G +L+ +++
Sbjct: 307 GAGCSVNQRVRKLREAVEFGLAYLNRHGYINYYGLQRFGTYAIGTHLLGMKVLKEDYEGV 366
Query: 178 VKMIL-----------DPREGE---RNEISKAREYY---------KETDDIDGTLRKLPR 214
+ IL D E E N+ +R+ Y + T + L LP+
Sbjct: 367 LDDILHVEDHFLQEAFDLEEQEPVHTNDFHNSRDDYNRAKAITIWRTTRNAQKALAILPK 426
Query: 215 HLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVV 274
+E AI++ L +++ AL +I R +RMMY+H+YQSF+WNH AS R +G V+
Sbjct: 427 RFSSEAAIIRHLGNNSRDFMGALLSITRGMRMMYIHAYQSFVWNHMASKRWSMYGPA-VI 485
Query: 275 VGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAAD 334
GDLV K D + + + Y + + +T D
Sbjct: 486 EGDLVLVKNDQSAADADAEEDDNCYAQA-------------------------RALTKED 520
Query: 335 INSGKYTIDDVVLPLPGSRVIYPMNDVAEVY---HHLAEKDGINLTESLHNVKEFSITSM 391
I +GKYTI DVVLP PG VIYP N + E Y + E G++ + KEF S+
Sbjct: 521 IETGKYTIFDVVLPTPGYDVIYPRNAIGEAYVTFMKMEENGGLDPYDMRRRQKEF---SL 577
Query: 392 TGNYRRVFQK-PMDFEWELLTYIDGNKPLAETDLD 425
+GNYR + + ++ ++ + Y D + + TDLD
Sbjct: 578 SGNYRHLLGRFIVEPQYAIRVYNDDTEQMYPTDLD 612
>gi|225677751|gb|EEH16035.1| pseudouridine synthase [Paracoccidioides brasiliensis Pb03]
Length = 669
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 177/546 (32%), Positives = 264/546 (48%), Gaps = 93/546 (17%)
Query: 17 DSR-GSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQ 75
DSR G W E G+ L F +YKENKDT E + I++ + I + GFAGTKD+R V+ Q
Sbjct: 161 DSRKGKLGWNELGGEHLHFTIYKENKDTMEVISFIARQMKINAKQLGFAGTKDRRGVTVQ 220
Query: 76 RVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLR----------- 124
R + ++ A +L + K L +GDF Y + L LG L GN F ITLR
Sbjct: 221 RASAYRIYADRLLNVGKSLRNAAVGDFEYHQHRLELGDLNGNEFIITLRDCQFPFDPEEK 280
Query: 125 --GVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL 182
V + +++ S + L + G+ NY+GLQRFG+ S T +G +L+ ++K A IL
Sbjct: 281 GANSVARATEIVSRSLHDLRQRGYFNYYGLQRFGTFSTRTDTIGLKMLQEDYKGACDCIL 340
Query: 183 --------------DPREG------ERNEISKAREY--YKETDDIDGTLRKLPRHLVAER 220
P ++I++A ++ T I+ L KLPR AE
Sbjct: 341 HFNPLALSASQSQSQPESPASKTLISADDIARAEAIHAFQTTGKINVALNKLPRKFSAES 400
Query: 221 AILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVF 280
I++ L + +Y AL IPR+LR+MYVH+YQS +WN A R + +G E VV GDLV
Sbjct: 401 NIIRHLGRHKNDYFGALGTIPRSLRLMYVHAYQSLVWNFAVGERWRLYG-EKVVAGDLVL 459
Query: 281 CKGDDTEKELG-CVNPEFEYESSNDA---DDSSHLDEVPETDHPDGRHNLVKTVTAADIN 336
D EKE E+++ D D+ D P D L + ++A +
Sbjct: 460 VN-DFKEKEGARAAGGTEEFDADGDVVILPDAG--DSAPAADM----FELARALSAEEAA 512
Query: 337 SGKYTIDDVVLPLPGSRVIYPMNDVAEVY-HHLAEKDGINLTESLHNVKEFSITSMTGNY 395
SGKY+I D+VLPLPG ++YP N++ Y + K G L + + + S++G Y
Sbjct: 513 SGKYSIFDIVLPLPGFGILYPDNEMKTFYKEFMGSKRGGKL-DPFDMRRSWKDISLSGGY 571
Query: 396 RRVFQKP-MDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCM 454
R++ KP D+ +E+ Y ++ +TDL+K+ A +N G K +PSD
Sbjct: 572 RKLLSKPGPDYSFEVKAYAGDDEQFVQTDLEKLNMA--LN--------GGKKIAEPSDAT 621
Query: 455 KQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMA 514
+ + + D ++A+ L L L SS YATMA
Sbjct: 622 EGVDVKTAD--------------------------------KLAVVLKLQLGSSQYATMA 649
Query: 515 IRELLK 520
+REL+K
Sbjct: 650 LRELMK 655
>gi|91088613|ref|XP_973949.1| PREDICTED: similar to tRNA pseudouridine synthase D [Tribolium
castaneum]
gi|270011693|gb|EFA08141.1| hypothetical protein TcasGA2_TC005758 [Tribolium castaneum]
Length = 668
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 172/528 (32%), Positives = 260/528 (49%), Gaps = 95/528 (17%)
Query: 10 ERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDK 69
++ D D+R NWP G+F+ F +YKE DT + I+ L + P F +AG KD+
Sbjct: 167 KKHDGKIDNRS--NWPSDKGEFVHFLVYKECLDTLDTALRIASCLKMPPAHFSYAGVKDR 224
Query: 70 RSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVD 129
R+ +TQ +V + KL + + +++G+ + + L LG L GN+F I LR V D
Sbjct: 225 RAKTTQWFSVKRVEPWKLMVKTRPIRNVKIGNITFKDKPLKLGDLTGNKFRIALRNVTGD 284
Query: 130 SEDVIKASANSLGRNGFINYFGLQRFGSG-SVPTHLVGATLLRGEWKSAVKMILDPREGE 188
+D+I+ S SL GF+NY+GLQRFG+ VPT VG LL G WK A +IL + +
Sbjct: 285 -DDLIEKSLKSLQDKGFVNYYGLQRFGNDKEVPTFSVGIQLLLGNWKEACDIILKLTKSD 343
Query: 189 RN--EISKAREYYKETDDIDGTLRKL-PRHLVAERAILQCLKKCPGN-YLQALKAIPRTL 244
+ ++SKA++ Y ET D + L + ++ E +L L K N Y+ AL +IPR
Sbjct: 344 QPDLDVSKAKKVYAETGDPEKALAQFESKNSCIEYLLLSGLSKEHKNDYVNALASIPRNT 403
Query: 245 RMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSND 304
R++Y+HS+QS +WN AS R++K+G + VV GDL+ E E+S D
Sbjct: 404 RLLYIHSFQSLVWNLIASKRIEKYGLK-VVPGDLILL--------------ENLKENSED 448
Query: 305 ADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEV 364
+D + P VK +T D YTI D+VLPLPG + YP N + +
Sbjct: 449 DEDCGENKKEP-----------VKELT--DEECANYTIYDIVLPLPGYDITYPEN-MKDC 494
Query: 365 YHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDL 424
Y + EK G+ L + V+ + +++G YR++ + + W+++ Y D N L +DL
Sbjct: 495 YKEILEKYGLTLEMTRQKVRTY---TLSGTYRKLMGQVQNLSWKIMYYNDPNDNLIRSDL 551
Query: 425 DKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHV 484
+++ EK+P+
Sbjct: 552 EEL-----------------KGEKEPA--------------------------------- 561
Query: 485 ESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
SV G GK AL L L SS YATM +RE+LK+ TS + H LN
Sbjct: 562 -SVEG----GKYKALLLDFCLDSSSYATMVLREILKSDTSSSSHAKLN 604
>gi|342885805|gb|EGU85757.1| hypothetical protein FOXB_03605 [Fusarium oxysporum Fo5176]
Length = 715
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 172/540 (31%), Positives = 272/540 (50%), Gaps = 83/540 (15%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G++L F L+KEN+DT +A+ I++ L + P+ G+AGTKD+R+ + QR +V R LA
Sbjct: 196 GEYLHFTLFKENRDTMDAVNQIARFLKVKPQVIGYAGTKDRRASTVQRCSVRYMRPRNLA 255
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRG--VVVDSED--------VIKASA 138
+N R+ G+ GD+ Y + + LGQLLGN F I ++ +V +S D V+K S
Sbjct: 256 GINGRIWGVSTGDYDYKDKPIYLGQLLGNEFVIAIKSCQIVGESNDQPIAQRVEVLKKSV 315
Query: 139 NS----LGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL--DPREGER--- 189
+S + +G+INYFG QRFG+ V TH VG +L +++ AV +L D + +R
Sbjct: 316 DSALNHMTEHGWINYFGHQRFGTHEVGTHQVGQLILGDKYEEAVMSLLHYDDKIAQRAEA 375
Query: 190 ----NEISKAREYYKE-------TD-DIDGTLRKLPRHLVAERAILQCLKKCPG----NY 233
+E SK EY + TD D+D ++ +PR AE +I + L + ++
Sbjct: 376 GDIPDEPSKRDEYLRNQACMLFLTDKDVDRAIKLMPRRFSAENSIFRHLNRQGAQSRRDF 435
Query: 234 LQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCV 293
+ +L I R LR MY+H+YQS++WNHAAS R + HG E+V+ GDL+ + T
Sbjct: 436 IGSLVHITRGLRSMYLHAYQSYIWNHAASRRWELHG-ENVIAGDLIIAPTEST------- 487
Query: 294 NPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSR 353
S D D ++ V + + R + +TA + SG YTI D+VLP PG
Sbjct: 488 ----PLVSGQDQDGDDIINPVEDDEDAPVR---ARPLTAEEAASGNYTIFDIVLPTPGYD 540
Query: 354 VIYPMNDVAEVYHHLAEKD---GINLTESLHNVKEFSITSMTGNYRRVFQKPMDF-EWEL 409
V+YP ND+ E Y +D ++ + +EF S+ G YR++ + + E+
Sbjct: 541 VVYPENDIGEFYKDFMGRDENGNLDPYKMRRMRREF---SLPGRYRKIMNRFLATPSAEV 597
Query: 410 LTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTE 469
Y D + + TDLD I +K + + E V S+S K K+
Sbjct: 598 RAYSDDAEQMHPTDLDNIKASKGPSRKRSLEDV-------------DSDSTVKKTKV--- 641
Query: 470 NNEAACAKEVKQPHVESVCGADSQGKQ----------MALKLGLTLPSSCYATMAIRELL 519
N + EV+ +V++ D + +A+ + L S YAT+A+REL+
Sbjct: 642 ENGTPASTEVEMTYVQAETADDGSAPEATPAPQEPTKVAVVVKFQLGRSAYATIALRELM 701
>gi|326475928|gb|EGD99937.1| pseudouridine synthase [Trichophyton tonsurans CBS 112818]
Length = 741
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 154/436 (35%), Positives = 229/436 (52%), Gaps = 50/436 (11%)
Query: 19 RGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVT 78
RG W E G +L F LYKENKDT E + +S+ L + P++F FAGTKD+R + QRV+
Sbjct: 266 RGKLGWSELGGDYLHFTLYKENKDTMEVISFLSRQLKVAPKAFQFAGTKDRRGATAQRVS 325
Query: 79 VFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLR------GVV----V 128
VF+ ++ LN L +GD+ Y K+GL LG+L GN F ITLR GVV V
Sbjct: 326 VFRIYPDRMPKLNASLRMAAIGDYEYQKQGLELGELNGNEFVITLRDCQFPEGVVENGNV 385
Query: 129 DSEDVIKASANSLGRN-------GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMI 181
S + I +G++ G+ NY+GLQRFG+ + T G +LRGE+K A + I
Sbjct: 386 SSPETIAKVTELVGKSLRDLRERGYFNYYGLQRFGTFATRTDTTGLKMLRGEFKEACESI 445
Query: 182 L--DP-------------REGERNEIS-------KAREYYKETDDIDGTLRKLPRHLVAE 219
L P +E +R +IS KA ++ T + L LPR AE
Sbjct: 446 LHYSPIALAAAQDVSSGDQEAQRPQISTDDILRAKAIHIFQTTGNGRDALEVLPRKFTAE 505
Query: 220 RAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLV 279
I++ L + +Y AL++IPR LR+MYVH+YQS +WN AA R + +G + VV GDLV
Sbjct: 506 SNIIRLLCQRKNDYFGALQSIPRNLRLMYVHAYQSLVWNFAAGERWRLYG-DKVVEGDLV 564
Query: 280 FC-KGDDTEKELGCVNPEFEYESSNDAD-DSSHLDEVPETDHPDGRHNLVKTVTAADINS 337
+ D K G ++ DAD + L + ++ D + +TA + S
Sbjct: 565 LVSEFKDETKATG-------QQAEVDADGEEIVLPDADDSAAVDDMFERARALTAEEAAS 617
Query: 338 GKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRR 397
GKY+I D+VLPLPG ++YP N + + Y + + + + S++G+YR+
Sbjct: 618 GKYSIFDIVLPLPGFDILYPANKMTDFYKEFMGSEKGGKLDPFDMRRSWRDISLSGSYRK 677
Query: 398 VFQKP-MDFEWELLTY 412
+ +P D+ +E+ Y
Sbjct: 678 MLSRPGADYSFEVKPY 693
>gi|367026950|ref|XP_003662759.1| hypothetical protein MYCTH_2060093 [Myceliophthora thermophila ATCC
42464]
gi|347010028|gb|AEO57514.1| hypothetical protein MYCTH_2060093 [Myceliophthora thermophila ATCC
42464]
Length = 981
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 152/445 (34%), Positives = 236/445 (53%), Gaps = 71/445 (15%)
Query: 26 EQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRAS 85
E G++L F LYKENKDT +A+ I+++L I +FGFAGTKD+R+ + QR++V++Q+AS
Sbjct: 196 EAGGEYLHFTLYKENKDTMDAVNTIARLLKIKASNFGFAGTKDRRAGTVQRISVYRQKAS 255
Query: 86 KLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSED------------- 132
L LN R+ +++GDF Y KE L LGQ GN F ITL+ + D
Sbjct: 256 NLIWLNSRIPNVKVGDFSYSKEPLQLGQHGGNEFVITLKNCQPLAGDNCSLIQRMKMIQQ 315
Query: 133 VIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL---------- 182
++ L +G+INY+GLQRFG+ ++ TH++G +L+G+++ ++ IL
Sbjct: 316 AVECGLAYLKHHGYINYYGLQRFGTYTIGTHMLGMKILKGDYEGFIEDILHVDEDLLKEV 375
Query: 183 ---DP--------REGERNEISKAR--EYYKETDDIDGTLRKLPRHLVAERAILQCLKKC 229
P ++ R+++++AR +K T D L LP+ +E AI++ L K
Sbjct: 376 LSNQPQTYGTGKDQQNTRDDLNRARGITAWKTTKKADKALEFLPKRFSSEIAIIRHLGKN 435
Query: 230 PGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKE 289
P ++ A+ +I R +RMMYVH+YQS++WN A+ R K+G + V+ GDLV G
Sbjct: 436 PKDFTGAVLSITRGMRMMYVHAYQSYVWNFVATRRWSKYGAK-VIEGDLVLVTGSRRRDR 494
Query: 290 LGC--VNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVL 347
NP ++ ++ +H +TAAD+ SGKYTI DVVL
Sbjct: 495 SDDDEFNP-YDDNDDDNIYAQAH------------------ALTAADVASGKYTIFDVVL 535
Query: 348 PLPGSRVIYPMNDVAEVYHHL---AEKDGINLTESLHNVKEFSITSMTGNYR----RVFQ 400
P PG V YP ND+ + Y E +N + +EF S++GNYR R+
Sbjct: 536 PTPGYDVSYPRNDIGDYYVEFMGRPENGSLNPFDMRRKQREF---SLSGNYRPLIGRLIG 592
Query: 401 KPMDFEWELLTYIDGNKPLAETDLD 425
P ++ + Y + + + TDLD
Sbjct: 593 NP---QYAVRAYREDTEQMYPTDLD 614
>gi|451845252|gb|EMD58565.1| hypothetical protein COCSADRAFT_165386 [Cochliobolus sativus
ND90Pr]
Length = 799
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 182/563 (32%), Positives = 268/563 (47%), Gaps = 108/563 (19%)
Query: 19 RGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVT 78
RG +W E G++L F+LYKENKDT E +G + L + FGFAGTKD+R+ + QR+
Sbjct: 283 RGGLDWEELGGEYLHFNLYKENKDTMEVVGFLGSKLNCGAKGFGFAGTKDRRACTVQRLC 342
Query: 79 VFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSE------- 131
V +Q A ++ + NK L +GDF + + LG L+GN FTITLR SE
Sbjct: 343 VKRQTAQRIQSFNKVLFNAAVGDFQHSHHDIKLGNLMGNEFTITLRDCHFQSEEGLDFEQ 402
Query: 132 ------DVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL--- 182
DV++ + GFINY+GLQRFGS + T +G +L+ + K AV+ +L
Sbjct: 403 RQKLANDVVRKAITDFSEKGFINYYGLQRFGSFAASTDAIGRKMLQDDLKGAVEDLLAYS 462
Query: 183 ------------DP----REGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCL 226
DP + +RN +KA ++ T + L LPR AER I+Q L
Sbjct: 463 DVALAAADGTSTDPTIQVSQDDRNR-AKALHIWRTTSNGSEALNLLPRKFTAERNIIQHL 521
Query: 227 KKCPG---------NYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGD 277
++ AL IPRTLR+MYVH+YQS +WN A R + ++ VV GD
Sbjct: 522 SSRNSKTGRHDRKTDWQGALMTIPRTLRLMYVHAYQSLVWNTIAGKRWATYSSQ-VVEGD 580
Query: 278 LVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPET-DHPDGRHNLV--------- 327
LV + +KE VNP SS + LD+ ET +P G N +
Sbjct: 581 LVLVH-EHRDKE---VNP----TSSTQQQPDTTLDQDGETIINPHGTENALAPESNFERA 632
Query: 328 KTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYH-HLAEKDGINLTESLHNVKE- 385
+ ++AA+ SG YTI DVVLP PG V YP N + Y +A + G L HN++
Sbjct: 633 RPLSAAEAASGAYTIYDVVLPQPGFDVEYPPNAIGAFYKTFMASEQGGGLDP--HNMRRS 690
Query: 386 FSITSMTGNYRRVFQKPM-DFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCG 444
+ S++G YR+ +P+ + +E+ Y ++ TDL+ +
Sbjct: 691 WREVSLSGGYRKFLARPLREVGYEVHGYARVDEQFVRTDLEAL----------------- 733
Query: 445 NKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLT 504
+D + ++E+ EA ++ + + A+ + L
Sbjct: 734 ---RDGAGAKTKAEA------------EAGVEDGEEKEEKDKI----------AVVIKLQ 768
Query: 505 LPSSCYATMAIRELLKTSTSVAF 527
L SS YATMA+REL+K AF
Sbjct: 769 LGSSQYATMALRELMKAGGVKAF 791
>gi|392574658|gb|EIW67793.1| hypothetical protein TREMEDRAFT_32838 [Tremella mesenterica DSM
1558]
Length = 735
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 171/537 (31%), Positives = 252/537 (46%), Gaps = 100/537 (18%)
Query: 28 LGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFK------ 81
L ++ F L+K N++TQ+ L +S++L P+ GTKDKR+V+ QRV + +
Sbjct: 218 LPPYIHFTLHKTNRETQDCLSHLSRLLNCHPKDLTVCGTKDKRAVTVQRVCLRRGNNSHA 277
Query: 82 ----------------QRASKLAALNKRL-IGIRLGDFCYVKEGLLLGQLLGNRFTITLR 124
+R ++ AA+ +R G R+GD Y + L LG L GN+F ITLR
Sbjct: 278 GKTLVGVWKLINGITGRRNTEQAAITRRAERGCRIGDLEYSDQFLELGMLKGNQFVITLR 337
Query: 125 GVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDP 184
V + I SL GFIN++G+QRFG+ +VPTH+ G +LRG W +AV IL
Sbjct: 338 NVQAEDTKSIDEVMTSLRDRGFINFYGMQRFGTSTVPTHITGLHILRGNWGAAVDSILSL 397
Query: 185 REGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQ--CLKKCPGNYLQALKAIPR 242
REGE R + E D L +PR VAERAI + K + L AL IPR
Sbjct: 398 REGEHPTCVAGRLAWLEDQDPVKALELMPRRSVAERAIWEHWVRHKQTEDKLGALGTIPR 457
Query: 243 TLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELG-CVNPEFEYES 301
LR MYVH+YQS++WN S R++ ++ +VGDLV + E+ N E E
Sbjct: 458 NLRTMYVHAYQSYIWNLVVSERMKL--SDQPMVGDLVHANEMEGEQRFHHTQNVESHLEM 515
Query: 302 S---NDADDSSHLDEVPETDHPDGR----------HNLVKTVTAADINSGKYTIDDVVLP 348
S DE+ E +G + VK +TA ++ G YTI DVV+P
Sbjct: 516 KVVVRCGMICSETDEMEEETRINGEGKKQKWESSSSSEVKLLTAEEL--GSYTIFDVVMP 573
Query: 349 LPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWE 408
LPG V YP + ++Y + + DG++L +++S + G+YR++ +P W
Sbjct: 574 LPGWNVEYPSGKIGQLYEDIMKADGLDLHRMRREQRDYS---LPGSYRKLLTRPSQCSWT 630
Query: 409 LLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLST 468
+ Y D + L + +E+A+ G
Sbjct: 631 HIQYTDPD---------------LALVQSDEDALLG------------------------ 651
Query: 469 ENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSV 525
+ P + D G+ ALK+ LTLP+S YATMA+RE+ + TS
Sbjct: 652 ----------LNIPATD-----DPNGRFRALKIELTLPASVYATMALREITREETST 693
>gi|198417869|ref|XP_002127901.1| PREDICTED: similar to pseudouridylate synthase 7 homolog isoform 1
[Ciona intestinalis]
Length = 624
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 162/500 (32%), Positives = 235/500 (47%), Gaps = 80/500 (16%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGIL-PRSFGFAGTKDKRSVSTQRVTVFKQRASKLAA 89
+ +F LYKEN T +A+ LI K L + R F +AG KDKR V+ Q VT +L
Sbjct: 158 YCKFVLYKENIATMDAVNLILKKLNLRHARCFQYAGNKDKRGVTVQEVTT-SISPERLVP 216
Query: 90 LNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINY 149
+N+ L IR+G+ K LG L GN+F+I +R + E +KA+ S + GFINY
Sbjct: 217 VNQILSNIRVGNLVSCKTAKRLGDLNGNQFSIVIRNTLDIEESDLKAAIKSFSQTGFINY 276
Query: 150 FGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDP--REGERNEISKAREYYKETDDIDG 207
FG+QRFG+ +VPT+ +G +++ W+ V +IL ++ I+ R ++E ++
Sbjct: 277 FGMQRFGTNNVPTYEIGKSIISSRWEETVDLILSSCFKDCSEETINLIRN-WREENNAKK 335
Query: 208 TLRKLPRHLVAERAILQCLKKC-PGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQ 266
KL R E +L + P +Q+L IPR RM+Y+HSYQSF+WN S R
Sbjct: 336 AFDKLNRRSSFEGYLLLGISHFGPKQLVQSLARIPRNTRMLYLHSYQSFVWNRIVSRRFL 395
Query: 267 KHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNL 326
G + VVGDLV + EK +G DA E E D + L
Sbjct: 396 TFG-DSPVVGDLVLAGNEKEEKSIGP-----------DAKKQKVETEESERDE----YGL 439
Query: 327 VKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEF 386
V + N Y+I DV++PLPG +V YP N + Y + GI + H VKE+
Sbjct: 440 PDVVVVTEENIDNYSIHDVIMPLPGHKVTYPTNSALQWYKDEFKAAGIEESMFDHKVKEY 499
Query: 387 SITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNK 446
+ G YR++ KP D EW+++ Y D KPL +D D I++ E G K
Sbjct: 500 ---YLPGAYRKIINKPNDVEWDIVKYNDYQKPLLASDKD---------ILQGGERPSGEK 547
Query: 447 EKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLP 506
+ GK AL++ +L
Sbjct: 548 D----------------------------------------------GKFTALRISFSLS 561
Query: 507 SSCYATMAIRELLKTSTSVA 526
SSCYAT+A+RE++K S A
Sbjct: 562 SSCYATVAMREVMKRDMSSA 581
>gi|384483344|gb|EIE75524.1| hypothetical protein RO3G_00228 [Rhizopus delemar RA 99-880]
Length = 570
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 131/407 (32%), Positives = 220/407 (54%), Gaps = 42/407 (10%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+W G +L+ H+YK DT A+ +IS +G +++TQ +++ +
Sbjct: 183 DWNTIGGDYLQVHMYKSGIDTMNAINVISSKVG---------------AITTQTLSLKRI 227
Query: 83 RASKLAALNKRLI--GIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANS 140
+ + A + L+ GI +GD+ +VK GL LG L GN FTI LR V +E ++ S S
Sbjct: 228 KPGRFVAAIEELMKSGIYIGDYKFVKNGLTLGDLGGNHFTIVLRDVKGITEAGLQTSLES 287
Query: 141 LGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYK 200
L NGF+NYFG+QRFG+ +V TH +G +++ ++ A +IL PREGER + + AR+ +K
Sbjct: 288 LRDNGFLNYFGMQRFGTSTVLTHTIGCAIMKKRYEEASDLILYPREGEREDYNNARQLWK 347
Query: 201 ETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
+T + + TL P+ +AER +L + P + A+K +PR + +Y H+YQS++WN
Sbjct: 348 DTRNAEATLAIFPKRAMAERKLLMFYSRNPSQHANAIKNLPRHMLSLYSHAYQSYVWNRV 407
Query: 261 ASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHP 320
S R + +G+ +VGD+V E E + + S D V D
Sbjct: 408 VSERARLYGSHKPLVGDIVLV----------------ENEKKDVSKRDSKRDRVGRRDFN 451
Query: 321 DGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESL 380
+ + + K +T D+++ Y+I+DVV PLPG +YP N++ ++Y + +DGI++ +
Sbjct: 452 NRK--VPKVLTEEDVDN--YSIEDVVYPLPGRLSVYPENEIKKLYVEIMAEDGISIDK-- 505
Query: 381 HNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKI 427
K+ + G+YR + KP W + Y D + L TD+D++
Sbjct: 506 ---KDKHFEGLNGDYRPLLAKPEQMSWSFIRYNDPVEKLCNTDIDRL 549
>gi|322789733|gb|EFZ14899.1| hypothetical protein SINV_07212 [Solenopsis invicta]
Length = 730
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 148/424 (34%), Positives = 232/424 (54%), Gaps = 30/424 (7%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+W G + F L+K N DT + ++ L + P +F +AGTKD+R+ +TQ +++ K
Sbjct: 206 DWSRCGGDYCHFLLHKVNMDTMGVVNQLAANLRLQPNNFCYAGTKDRRAWTTQWMSLRKV 265
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
+ +K + G +G+F Y K+ L LG L GN+F I LR ++++ I+ + SL
Sbjct: 266 EPQSILRASKGIRGAYVGNFKYAKDSLKLGMLRGNQFRIALRN-ARETDEKIEQAMTSLR 324
Query: 143 RNGFINYFGLQRFGS-GSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKE 201
NGFINY+GLQRFGS ++PTH +G LL+G+W A+++IL PR E+++AR+ Y E
Sbjct: 325 DNGFINYYGLQRFGSVPTIPTHEIGKCLLQGKWHEAIELILKPRPENDKELAEARQIYAE 384
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQA-LKAIPRTLRMMYVHSYQSFLWNHA 260
T D KL R E +L+ L+ Q L ++PR +R+MY+H+YQSF+WNH
Sbjct: 385 TKDARAAYAKLKRIDTIEARLLKGLQTMGDKNPQGVLDSVPRNIRLMYIHAYQSFVWNHV 444
Query: 261 ASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHP 320
S R+++ GT VVGDLV+ K + E V+ E ND DD + +
Sbjct: 445 VSKRIKQFGTV-PVVGDLVYDKQNRKE----IVSDETTDYPLNDNDDIKDKTDTAFVEEK 499
Query: 321 D--------GRHNL-------VKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVY 365
D + NL VK +T D+++ YT+ DV++P PG +V YP A
Sbjct: 500 DIDPMSSEASKENLEQNDFPTVKILTEEDLSN--YTLADVIIPQPGWKVTYPTYAKAWFD 557
Query: 366 HHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLD 425
LA KDG+ T+ N K++ S++G YR + + P W ++ Y + + L +D+D
Sbjct: 558 KFLA-KDGLT-TDLRQNNKKY---SLSGAYRNILEIPTSLSWRIMHYENKHDDLILSDID 612
Query: 426 KIAK 429
++ K
Sbjct: 613 EMRK 616
>gi|46125833|ref|XP_387470.1| hypothetical protein FG07294.1 [Gibberella zeae PH-1]
Length = 738
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 165/530 (31%), Positives = 263/530 (49%), Gaps = 62/530 (11%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G++L F L+KEN+DT +A+ IS+ L + P+ G+AGTKD+R+ + QR +V R LA
Sbjct: 224 GEYLHFTLFKENRDTMDAVNQISRFLKVKPQVIGYAGTKDRRASTVQRCSVRYMRPRNLA 283
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRG---VVVDSEDVIKASANSLGRN- 144
+N R+ G+ GD+ Y + + LGQLLGN F I ++ V +S++ I L +N
Sbjct: 284 GINGRIWGVSTGDYEYKDKPIYLGQLLGNEFVIAIKSCQMVGENSDESIAEQVEKLKKNV 343
Query: 145 ----------GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILD-----PREGER 189
G+INYFG QRFG+ V TH +G +L +++ AVK +L ++ E
Sbjct: 344 DSSLSHMNEHGWINYFGHQRFGTHEVGTHQIGQLILGDKYEEAVKSLLHYDDEIAQKAEA 403
Query: 190 NEI----SKAREYYKE--------TDDIDGTLRKLPRHLVAERAILQCLKKCPG----NY 233
EI SK EY + D+ + +PR AE I + L + ++
Sbjct: 404 GEIPEEPSKRDEYLRNQACMLFLTNKDVRRAIDIMPRRFSAENCIFRHLNRQGAQSRRDF 463
Query: 234 LQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCV 293
+ +L I R LR MY+H+YQS++WNHA S R + HG E+V+ GDL+ + T
Sbjct: 464 IGSLVHITRGLRSMYLHAYQSYVWNHAVSRRWELHG-ENVIPGDLIIAPAETT------- 515
Query: 294 NPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSR 353
S D D ++ V + + R + +TA + SG YTI D+VLP PG
Sbjct: 516 ----PLVSGQDQDGDDIINPVEDDEDTPVR---ARPLTAEEAASGNYTIFDIVLPTPGYD 568
Query: 354 VIYPMNDVAEVYHHLAEKD---GINLTESLHNVKEFSITSMTGNYRRVFQKPMDF-EWEL 409
V+YP ND+ E Y +D ++ + +EF S+ G YR++ + + E+
Sbjct: 569 VVYPENDMGEFYKEFMGRDENGNLDPYKMRRMRREF---SLPGRYRKIMNRFLATPSAEV 625
Query: 410 LTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTE 469
Y D + + TDLD I +K N + + + E D S K S +I+++
Sbjct: 626 RAYSDDTEQMHPTDLDNIKASKSANRKRSRD----DAESD-STAKKAKVEDSTEIEMTDA 680
Query: 470 NNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELL 519
+ +A + + A + ++A+ + L S YAT+A+REL+
Sbjct: 681 SGQAGEGETGPSENTSEATPAVQEPSKIAVIVKFQLGRSAYATVALRELM 730
>gi|408399617|gb|EKJ78715.1| hypothetical protein FPSE_01083 [Fusarium pseudograminearum CS3096]
Length = 738
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 164/530 (30%), Positives = 262/530 (49%), Gaps = 62/530 (11%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G++L F L+KEN+DT +A+ IS+ L + P+ G+AGTKD+R+ + QR +V R LA
Sbjct: 224 GEYLHFTLFKENRDTMDAVNQISRFLKVKPQVIGYAGTKDRRASTVQRCSVRYMRPRNLA 283
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRG---VVVDSEDVIKASANSLGRN- 144
+N R+ G+ GD+ Y + + LGQLLGN F I ++ V +S++ I L +N
Sbjct: 284 GINGRIWGVSTGDYEYKDKPVYLGQLLGNEFVIAIKSCQMVGENSDESIAQQVEKLKKNV 343
Query: 145 ----------GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILD-----PREGER 189
G+INYFG QRFG+ V TH +G +L +++ AVK +L ++ E
Sbjct: 344 DSSLSHMNEHGWINYFGHQRFGTHEVGTHQIGQLILGDKYEEAVKSLLHYDDEIAQKAEA 403
Query: 190 NEI----SKAREYYKE--------TDDIDGTLRKLPRHLVAERAILQCLKKCPG----NY 233
EI SK EY + D+ + +PR AE I + L + ++
Sbjct: 404 GEIPEEPSKRDEYLRNQACMLFLTNKDVRRAIDIMPRRFSAENCIFRHLNRQGAQSRRDF 463
Query: 234 LQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCV 293
+ +L I R LR MY+H+YQS++WNHA S R + HG E+V+ GDL+ + T
Sbjct: 464 IGSLVHITRGLRSMYLHAYQSYVWNHAVSRRWELHG-ENVIPGDLIIAPAETT------- 515
Query: 294 NPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSR 353
S D D ++ V + + R + +TA + SG YTI D+VLP PG
Sbjct: 516 ----PLVSGQDQDGDDIINPVEDDEDTPVR---ARPLTAEEAASGNYTIFDIVLPTPGYD 568
Query: 354 VIYPMNDVAEVYHHLAEKD---GINLTESLHNVKEFSITSMTGNYRRVFQKPMDF-EWEL 409
V+YP ND+ E Y +D ++ + +EF S+ G YR++ + + E+
Sbjct: 569 VVYPENDMGEFYKEFMGRDENGNLDPYKMRRMRREF---SLPGRYRKIMNRFLAAPSAEV 625
Query: 410 LTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTE 469
Y D + + TDLD I +K N + + + E D S K S +I+++
Sbjct: 626 RAYSDDTEQMHPTDLDNIKASKSANRKRSRD----DAESD-STAKKAKVEDSTEIEMTDA 680
Query: 470 NNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELL 519
+ + + + A + ++A+ + L S YAT+A+REL+
Sbjct: 681 SGQVGEGETAPSENTSEATPAVQEPSKIAVIVKFQLGRSAYATVALRELM 730
>gi|195441545|ref|XP_002068568.1| GK20352 [Drosophila willistoni]
gi|194164653|gb|EDW79554.1| GK20352 [Drosophila willistoni]
Length = 733
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 158/521 (30%), Positives = 253/521 (48%), Gaps = 74/521 (14%)
Query: 15 PFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVST 74
P S N+P + F+ F ++K N DT E +++ L + P + GTKDKR+ +T
Sbjct: 205 PGRSDNRWNFPTE---FVSFLVHKTNIDTSEVAAILASRLNLRPSQVNYCGTKDKRAKTT 261
Query: 75 QRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVI 134
Q ++ ++ + + + + +G+F +++ LG L GNRF I LR + + I
Sbjct: 262 QSFSIKRRTPENIVQAARSIRNVHIGNFSFIQATHKLGDLQGNRFRIALRHIAKERRADI 321
Query: 135 KASANSLGRNGFINYFGLQRFG-SGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEIS 193
+ S SL + GFINY+GLQRFG S SVPT+ VG LL+ ++K A ++IL PR+ + +
Sbjct: 322 ELSLESLKQRGFINYYGLQRFGNSSSVPTYEVGVALLKRDYKLACELILKPRDNDVEFMR 381
Query: 194 KAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKC-PGNYLQALKAIPRTLRMMYVHSY 252
R+ + E D K+ E+ IL L K +Y AL+ IPR + ++Y H+Y
Sbjct: 382 SIRQEWWEKRDSAAAAEKIHGDKFIEKKILDGLAKFGEHDYAAALRQIPRNMLLLYPHAY 441
Query: 253 QSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLD 312
QSF++N AS R+++ G + ++ GDLV+ +D+ E+ E +A D+ ++D
Sbjct: 442 QSFIFNRIASRRIKEFGLK-LIPGDLVYADQEDSIMEV---------EEKIEAPDAENVD 491
Query: 313 E-VPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEK 371
E V + VK + +DI SGKY + DVVLPLPG + YP ND Y + +
Sbjct: 492 EDVSMEEEESAFKRKVKPINESDIASGKYKLTDVVLPLPGHDITYPSNDSGLWYEQMLNE 551
Query: 372 DGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAK 431
G++ H K + ++ G YR++ +P + +W Y
Sbjct: 552 VGLSSELLKHKDKTY---ALGGAYRKLIIQPENLKWNFRFY------------------- 589
Query: 432 LVNIVKEEEAVCGNKEKDPSDCMKQSE-SLSKDIKLSTENNEAACAKEVKQPHVESVCGA 490
+ P D + S+ L K I+ ++E P +
Sbjct: 590 ----------------QTPEDTLIASDWELLKKIETTSE------------PSI------ 615
Query: 491 DSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTL 531
++ K MAL L +LP++ YATM +REL K TS A L
Sbjct: 616 -AEAKYMALILEFSLPTAAYATMLLRELFKQDTSTATQMQL 655
>gi|340522491|gb|EGR52724.1| hypothetical protein TRIREDRAFT_119623 [Trichoderma reesei QM6a]
Length = 745
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 179/553 (32%), Positives = 271/553 (49%), Gaps = 85/553 (15%)
Query: 28 LGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKL 87
+G++L F L+K+N+DT +A+ I+++L + P+ +AGTKD+R+ + QR +V R L
Sbjct: 208 IGEYLHFTLFKDNRDTMDAVNQIARILKVKPQVINYAGTKDRRASTVQRCSVRYTRDRSL 267
Query: 88 AALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRG--VVVD------SEDV------ 133
A +N +L GI GD+ Y E + LG+LLGN F IT++ +V D SE V
Sbjct: 268 AGINGKLWGITTGDYEYKSEPIHLGELLGNEFVITIKNCQIVGDASTKPISEQVELMREN 327
Query: 134 IKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL---------DP 184
++++ + + +G+INYFG QRFG+ + TH +G +L +++A+ IL
Sbjct: 328 VQSALDHMTEHGWINYFGHQRFGTHQIGTHEIGKLILGDNYEAAINAILAYDEEIAHKAE 387
Query: 185 REGERNEISKAREY--------YKETDDIDGTLRKLPRHLVAERAILQCL----KKCPGN 232
EG +E +K EY +K D+D + +PR AE +L+ L K+ +
Sbjct: 388 TEGIPDEPAKRDEYNRHLACMLFKTEKDVDKAIEIMPRRFSAEVCVLRHLNRQGKQSRRD 447
Query: 233 YLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELG- 291
++ AL I R LR MY+H+ QS++WNHAAS R + HG E VV GDLV + + T + G
Sbjct: 448 FVGALIHITRGLRSMYLHALQSYVWNHAASRRWELHG-EKVVKGDLVIAETEATPQISGQ 506
Query: 292 ------CVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDV 345
VNP E DD D+VP P +T + SGKYTI DV
Sbjct: 507 DQDGDDIVNPVVE-------DD----DDVPLRARP---------LTEEEAASGKYTIHDV 546
Query: 346 VLPLPGSRVIYPMNDVAEVYHHLA---EKDGINLTESLHNVKEFSITSMTGNYRRVFQKP 402
VLP PG VIYP N++ + Y E G++ + +EF S+ G YR++ K
Sbjct: 547 VLPTPGYDVIYPDNEIGDFYVDFMGREENGGLDPHKMRRMRREF---SLPGRYRKLMNKF 603
Query: 403 MDFEW-ELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVC-----GNKEKD---PSDC 453
+ E TY+ + + TDLD I A+ + + +E D PS
Sbjct: 604 LGTPAVEFKTYVSDEEQMHPTDLDLIRAARKASGNNNSNSNSNSNKRSREESDDARPSKV 663
Query: 454 MK-QSESLSKDIKLSTE--NNEAACAKEVKQPHVESVCGADSQGKQMALKLG----LTLP 506
K Q E D E N AA + + E+ ++ LK+ L
Sbjct: 664 AKVQQEDQESDAVTQNEATNEAAATGNDKAEESAETTSAQETMEVDQPLKIAAVIKFQLG 723
Query: 507 SSCYATMAIRELL 519
S YAT+ +REL+
Sbjct: 724 RSAYATVTLRELM 736
>gi|322698460|gb|EFY90230.1| pseudouridine synthase TruD/Pus7 [Metarhizium acridum CQMa 102]
Length = 673
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 176/552 (31%), Positives = 272/552 (49%), Gaps = 78/552 (14%)
Query: 18 SRGSENWP---EQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVST 74
SRG P E +G++L F LYK+N+DT +A I+++L + P+ G+AGTKD+R+ +T
Sbjct: 131 SRGRRGQPGDDEPMGEYLHFTLYKDNRDTMDAASQIARLLRVKPQIIGYAGTKDRRASTT 190
Query: 75 QRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVI 134
QR +V QR LA LN +L GI GD+ Y ++ + LGQLLGN F ITL+ + E
Sbjct: 191 QRCSVRHQRKRALAGLNGKLWGIATGDYEYQEQPIHLGQLLGNEFVITLKNCKMADETAA 250
Query: 135 KASANSLG--RN------------GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM 180
++ + L RN G+INYFG QRFG+ V TH VG +L +++ AV
Sbjct: 251 QSPSERLASMRNNVEPALKHMSSHGWINYFGHQRFGTHDVGTHQVGKLILGDDFEGAVNA 310
Query: 181 IL--DPREGERNEISKAREYYKETD---------------DIDGTLRKLPRHLVAERAIL 223
+L DP + E + + + D D++ + +PR AE IL
Sbjct: 311 LLKYDPEIAAKAEAGQVPDEPSKKDDALRHLACMLFQTGKDLNRAVNVIPRRFAAESCIL 370
Query: 224 QCLKKCPGN----YLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLV 279
+ L + N + A+ I R LR MY+H+YQS +WNHAAS R HG++ V GDLV
Sbjct: 371 RHLTRMGKNSARDFAGAITHITRGLRSMYLHAYQSHVWNHAASQRYALHGSK-VTKGDLV 429
Query: 280 FCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGK 339
G+ P + D D ++ V + + R + +T + SGK
Sbjct: 430 ISDGE--------AQPA---AAEQDQDGDEIINPVEDEEDAPLR---ARPLTEEEAASGK 475
Query: 340 YTIDDVVLPLPGSRVIYPMNDVAEVYHHLA--EKDGINLTESLHNV-KEFSITSMTGNYR 396
YTI D+VLP PG V+YP N++ + Y E++G + + +EF S+ G YR
Sbjct: 476 YTIYDIVLPSPGYDVVYPDNEIGQFYQEFMGREENGRLDPHKMRRLRREF---SLPGRYR 532
Query: 397 RVFQKPM-DFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMK 455
++ Q+ + + E Y + + TDLD I A+ I E + + P+ +K
Sbjct: 533 KLMQRFLVEPSVEFKLYEHDTEQMHPTDLDLINGAERNGI--ERKRKRDQDDGGPAKKIK 590
Query: 456 QSESLSK-DIKLSTENNE-------AACAKEVKQPHVESVCGADSQGKQMALKLGLTLPS 507
+ ++ + K+ N+E A AK +P E ++A+ + L S
Sbjct: 591 AGDGEAQAEAKMERANSEQDATSSNGAEAKAETEPSAEPT--------KIAVVVKFQLAS 642
Query: 508 SCYATMAIRELL 519
S YAT+ +REL+
Sbjct: 643 SAYATITLRELM 654
>gi|116191931|ref|XP_001221778.1| hypothetical protein CHGG_05683 [Chaetomium globosum CBS 148.51]
gi|88181596|gb|EAQ89064.1| hypothetical protein CHGG_05683 [Chaetomium globosum CBS 148.51]
Length = 986
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 147/442 (33%), Positives = 225/442 (50%), Gaps = 71/442 (16%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G++L LYKENKDT +A+ I+++L I +FGFAGTKD+R+ + QR++V++Q+AS L
Sbjct: 218 GEYLHLTLYKENKDTMDAVNTIARLLKIKASNFGFAGTKDRRAGTVQRISVYRQKASNLI 277
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSED-------------VIK 135
LN R+ +++GDF Y E L LGQ GN F ITL+ D ++
Sbjct: 278 WLNTRIPNVKVGDFTYSNEPLQLGQHGGNEFVITLKSCHPLGGDNCSLPHRMKMIQQAVE 337
Query: 136 ASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL------------- 182
L NG+INY+GLQRFG+ ++ TH++G +L+G+++ + IL
Sbjct: 338 CGLAHLKHNGYINYYGLQRFGTYTIGTHMLGMKILKGDYEGFIDDILHVDENVLKDVLGG 397
Query: 183 -DPREGERNEISKARE---------YYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGN 232
P G E +R+ +K T + L LP+ +E AI++ L + P +
Sbjct: 398 NSPTHGSAKEQQNSRDDQNRARAITAWKTTKKAEKALEFLPKRFSSETAIIRHLGRNPKD 457
Query: 233 YLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGC 292
+ A+ +I R +RMMYVH+YQS++WN A+ R K+G + V+ GDLV G
Sbjct: 458 FTGAVLSITRGMRMMYVHAYQSYVWNFVATRRWSKYGAK-VIEGDLVLVTGSRRRDRADD 516
Query: 293 --VNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLP 350
NP ++ ++ +H +TA+D+ SGKYTI DVVLP P
Sbjct: 517 DEFNP-YDDNDDDNIYAQAH------------------ALTASDVASGKYTIFDVVLPTP 557
Query: 351 GSRVIYPMNDVAEVYHHL---AEKDGINLTESLHNVKEFSITSMTGNYR----RVFQKPM 403
G V YP N++ E Y E ++ E +EF S++GNYR R+ P
Sbjct: 558 GYDVSYPRNEIGEYYVEFMGKPENGSLSPFEMRRKQREF---SLSGNYRPLIGRLIGNP- 613
Query: 404 DFEWELLTYIDGNKPLAETDLD 425
++ + Y D + + TD D
Sbjct: 614 --QYAVRAYRDDTEQMYPTDFD 633
>gi|407919375|gb|EKG12625.1| Pseudouridine synthase TruD [Macrophomina phaseolina MS6]
Length = 752
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 180/561 (32%), Positives = 271/561 (48%), Gaps = 81/561 (14%)
Query: 5 SKKRKERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFA 64
++ R + G++ + +++ E G L F LYKENKDT E + + L + F FA
Sbjct: 222 ARGRAQDGNSRDNQPQRQSFEEMGGDNLHFTLYKENKDTMEVINHLCAQLKTNSKKFSFA 281
Query: 65 GTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLR 124
GTKD+R+V+ QRV V K R +A + + L R+G Y ++ L LG GN+FTITLR
Sbjct: 282 GTKDRRAVTVQRVCVKKIRPEHIATVARGLFNARIGSISYQRKPLQLGDHAGNQFTITLR 341
Query: 125 GVVVDSED-------------VIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLR 171
ED ++ S + ++GFINYFGLQRFG+ V T +G +L
Sbjct: 342 DCHFQGEDGMDISQRVELAKDILARSCAAFQKDGFINYFGLQRFGTYDVSTDSIGKHILS 401
Query: 172 GEWKSAVKMIL-----------DPREGER---NEISKAREYYKETDDIDG--TLRKLPRH 215
GE + A+ +IL DP R ++ +A YK + + L LP
Sbjct: 402 GELEKAIDLILSYTPEALAAAKDPNNASRISDDDKKRALGLYKWKTEKNSKEALEVLPFR 461
Query: 216 LVAERAILQCL--------KKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQK 267
AER I++ L + ++ AL IP+ LR MYVH+YQS +WN AAS R+++
Sbjct: 462 FTAEREIIKHLSSFNRKQNESFENDFQGALGKIPKNLRGMYVHAYQSLVWNAAASERLKR 521
Query: 268 HGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGR---H 324
HG + V+ GDLV + +KEL E+ ++ D+ + P+ D+ +
Sbjct: 522 HGKK-VIPGDLVLV-SEHKDKELQPTE-----EALDEVDEYGEVVINPQGDNAAANADDY 574
Query: 325 NLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVK 384
+ +TA + NSG+Y+I DVVLP PG + YP ND+ + Y HN++
Sbjct: 575 ERARPLTADEANSGQYSIFDVVLPQPGWDIEYPHNDIKDFYVEFMLDPQRGGGVDPHNMR 634
Query: 385 -EFSITSMTGNYRRVFQKPM-DFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAV 442
++ S+ G YR++ + + + +E+ TY + L ETDL K+ VKE ++V
Sbjct: 635 RKWRDISLPGGYRKLMARSLGEVSFEVKTYKSDEEELVETDLAKL--------VKEGKSV 686
Query: 443 CGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLG 502
S +K + T N A E AD + K +A L
Sbjct: 687 --------------SLDDTKRKMMRTYNQRQAP---------ELPANADEREK-IATVLK 722
Query: 503 LTLPSSCYATMAIRELLKTST 523
L SS YATMA+REL+K T
Sbjct: 723 FQLGSSTYATMALRELMKGGT 743
>gi|350646416|emb|CCD58913.1| tRNA pseudouridine synthase D, putative [Schistosoma mansoni]
Length = 593
Score = 227 bits (579), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 168/526 (31%), Positives = 247/526 (46%), Gaps = 99/526 (18%)
Query: 11 RGDNPFDSRGSE-----NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAG 65
R D+P +++GS N + + F LYKE KDT A+ ++S+ L + P +F FAG
Sbjct: 147 RKDHP-EAKGSRQSRRANGMSKSAPYCHFVLYKEGKDTLSAIQVLSRFLHVGPSTFSFAG 205
Query: 66 TKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRG 125
TKD+R+++TQ VT + L+ LN RL G+RLG+F YV L LG L GN+F + LR
Sbjct: 206 TKDRRAITTQFVTAKGINSKTLSLLNTRLHGLRLGNFSYVSSPLFLGDLDGNQFVVVLRS 265
Query: 126 VVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHL-VGATLLRGEWKSAVKMILDP 184
V VI+ + + GF+NY+GLQRFG S +G L+R +W A+ +IL P
Sbjct: 266 VCA-PRSVIETAVGAWKSTGFVNYYGLQRFGHSSKSKSFEIGKYLIRSKWADAIDLILKP 324
Query: 185 REGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTL 244
+ + K +E + ++ D G P L E+ +L + K G L+A++ +PR L
Sbjct: 325 TYADLPFLRKVKEKFLQSGDAKGCADDCP--LGIEKTLLLGIAKY-GKTLKAIQMLPRNL 381
Query: 245 RMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSND 304
R +YVHSYQSFLWNH AS R+ H GDL GD + P+ N
Sbjct: 382 RQLYVHSYQSFLWNHVASLRMT-----HQNPGDLFAKPGDLYYNVQNVITPD------NC 430
Query: 305 ADDSSHLDEVPETDH---------PDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVI 355
DD + D V ET+ P + + + + + + K ++ VVLP+PG V
Sbjct: 431 EDDINFDDSVLETNESAISSANSLPSSKLSFIHPLVVGE--NEKIPLNSVVLPVPGYAVH 488
Query: 356 YPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDG 415
YP N HN ++ G+YR++ P + ++E Y +
Sbjct: 489 YPKN---------------------HNF------ALPGSYRKLIVVPENVKYEFHEYSNP 521
Query: 416 NKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAAC 475
PL ++DL +I + N V + Q+E+ + DI L
Sbjct: 522 GIPLVKSDL-QILNGTITNNVLTSAS--------------QNETQNNDICL--------- 557
Query: 476 AKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKT 521
D K+ A+ L LP S YATMAIREL KT
Sbjct: 558 ---------------DKDEKKQAVVLTFDLPKSSYATMAIRELTKT 588
>gi|388580075|gb|EIM20393.1| tRNA pseudouridine synthase D [Wallemia sebi CBS 633.66]
Length = 575
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 141/418 (33%), Positives = 206/418 (49%), Gaps = 74/418 (17%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFK--------- 81
++ F L K N+D+ +A+ +S+M+ + + AGTKDKR ++TQR+ + +
Sbjct: 155 YIHFVLQKSNRDSSDAVNHLSRMIKVKDKLMNVAGTKDKRGITTQRLCIKRGNMTLQDVW 214
Query: 82 QRASKLAALN-------KRLI----------GIRLGDFCYVKEGLLLGQLLGNRFTITLR 124
+R + N +R I G R+G+ Y E LG L GNRF I LR
Sbjct: 215 KRVNNAGTENQKEKKKVRRTIQEALQERGERGCRIGNLTYESENFALGDLNGNRFGIILR 274
Query: 125 GVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDP 184
V D ED I AS L GFINYFG+QRFG+ +PTH +G LL +W+ A IL
Sbjct: 275 DVESDGEDTINASLKVLAERGFINYFGMQRFGTSVIPTHYIGWLLLNSDWEGACDSILRL 334
Query: 185 REGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTL 244
R E ++ K R+ + + + L+ LPR +VAERAI++ L K ++L AL IPR L
Sbjct: 335 RPNEDDDCVKGRKAWLDDKNGKEALKLLPRKMVAERAIIEHLHKSNRDFLGALSRIPRNL 394
Query: 245 RMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSND 304
R MYVH+YQS++WN S R++ G + VV GD+V G+D
Sbjct: 395 RTMYVHAYQSYIWNSVVSERMRTFGLK-VVAGDVV-SAGED------------------- 433
Query: 305 ADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEV 364
VK V + KY+I DV++PLPG V+YP + E
Sbjct: 434 ----------------------VKRVEEGE--EDKYSIYDVLMPLPGHGVLYPTGKLGEK 469
Query: 365 YHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAET 422
Y + E D ++ + KEF SM G YR++ P D W ++ Y ++ L ++
Sbjct: 470 YKEMLEMDHLDYQKLWRPQKEF---SMEGGYRKIVHLPKDVTWSVIQYASDDEQLLKS 524
>gi|398407137|ref|XP_003855034.1| hypothetical protein MYCGRDRAFT_68643 [Zymoseptoria tritici IPO323]
gi|339474918|gb|EGP90010.1| hypothetical protein MYCGRDRAFT_68643 [Zymoseptoria tritici IPO323]
Length = 760
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 173/568 (30%), Positives = 266/568 (46%), Gaps = 115/568 (20%)
Query: 19 RGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVT 78
RG + W + G++L F LYKENKDT E L ++ + + ++F FAGTKD+R V+ QRV
Sbjct: 235 RGKQGWADLGGEYLHFTLYKENKDTMEVLYFLASQMKLHVKNFSFAGTKDRRGVTVQRVA 294
Query: 79 VFKQRASKLAALNKRLIGIRL-GDFCYVKEGLLLGQLLGNRFTITLRGVVVDSED----- 132
V K + ++ +LN+ G RL G + Y K L LG+L GN+F +TLR D E+
Sbjct: 295 VHKVKRDRIESLNRFARGWRLTGPWEYKKTSLELGELSGNQFLLTLRDARFDGEEADWTI 354
Query: 133 ---------VIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL- 182
V +A L GF+NY+GLQRFG+ S TH +G +L G+ K AV +L
Sbjct: 355 QQRLQHAKSVANTAAERLSTQGFLNYYGLQRFGTHSTGTHAIGEKILSGDLKGAVDSLLS 414
Query: 183 --------------------DPREGER----NEISKAREY--YKETDDIDGTLRKLPRHL 216
D G++ ++I++A +++T ++ L ++P
Sbjct: 415 YEDALLEENQAAESGAVADGDGGRGQKKVPYDDIARATGIRDWRKTGNVRDALGRIPGRF 474
Query: 217 VAERAILQCLKK---------CPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQK 267
AER I+ L K ++ AL I R LR+MYVH+YQS++WN R +
Sbjct: 475 SAERGIITHLGKRDHKTGARPAAEDWQGALMQIQRNLRLMYVHAYQSYVWNTVVGKRWEI 534
Query: 268 HGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDE---------VPETD 318
G VV GDLV + E++ G V E + H VP +
Sbjct: 535 FGNT-VVEGDLVVV--GEKEQQEGIVRSVPADEVDEHGEPIIHPSASAGGETGAGVPTSG 591
Query: 319 HPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVY-HHLAEKDGINLT 377
D + ++ ++ SG++TI D+VLPLPG VIYP N++ + Y +A + G L
Sbjct: 592 AADDPFVRARPLSRDEVESGRFTIFDLVLPLPGFDVIYPKNEIGQFYVDFMASEQGGGL- 650
Query: 378 ESLHNVKEFSITSMTGNYRRVFQKPMD-FEWELLTYIDGNKPLAETDLDKIAKAKLVNIV 436
+ + + S++G YR++ +P+ E EL Y ++ L +TD++K+ AK+ +
Sbjct: 651 DPHKMYRAWKDISLSGGYRKMMTRPLGRVEAELRIYSRPDEQLVQTDMEKLEGAKVSH-- 708
Query: 437 KEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQ 496
+K T++N + G +
Sbjct: 709 ---------------------------VKTETDDN--------------------ATGDK 721
Query: 497 MALKLGLTLPSSCYATMAIRELLKTSTS 524
+A+ L L L SS YATMAIREL K S
Sbjct: 722 LAVLLKLQLGSSQYATMAIRELSKGGAS 749
>gi|452845315|gb|EME47248.1| hypothetical protein DOTSEDRAFT_114770, partial [Dothistroma
septosporum NZE10]
Length = 752
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 180/564 (31%), Positives = 263/564 (46%), Gaps = 115/564 (20%)
Query: 19 RGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVT 78
RG +NW E G++L F LYKENKDT E L + L + + F FAGTKD+R V+ QRV
Sbjct: 227 RGRQNWAELGGEYLHFTLYKENKDTMEVLNFLGAQLKMHIKHFSFAGTKDRRGVTVQRVA 286
Query: 79 VFKQRASKLAALNKRLIG--IRLGD-FCYVKEGLLLGQLLGNRFTITLRGVVVDSED--- 132
+ + ++ LNK G RLG + Y EGL LG L GN F +TLR D ED
Sbjct: 287 IHRVLRQRIEQLNKMARGRSWRLGGPWEYRPEGLELGMLSGNEFLLTLRDAEFDGEDSSW 346
Query: 133 -----------VIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMI 181
V + +A+SL NG++NY+GLQRFGS TH+ G +L+G+ K AV I
Sbjct: 347 DMSRRLEHARTVAQDAADSLATNGYLNYYGLQRFGSYKTGTHVAGMRMLKGDLKGAVDAI 406
Query: 182 LDPRE---------GERNEISKAREYYKETDDID--------------GT-LRKLPRHLV 217
L E G + + + R +E D+D GT LR LP
Sbjct: 407 LAYDESLLQENQDSGPQGDGASKRNVPQE--DVDRATAIHQFSKNGNSGTALRLLPMRFA 464
Query: 218 AERAILQCLKK---------CPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKH 268
AER ++ L K ++ AL I R LR+MYVH+YQSF+WN R +
Sbjct: 465 AERGMITHLGKRDRGTNTRPNENDFQGALMQIQRNLRLMYVHAYQSFIWNTVVGKRWELF 524
Query: 269 GTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSH-------LDEVPETDHPD 321
G VV GDLV + + P + E + + H E T+ D
Sbjct: 525 GNS-VVEGDLVVVGEKEKAEGQPAAAPATKQELDENGEPVIHPSASTGGYSESATTEIED 583
Query: 322 GRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYH-HLAEKDGINLTESL 380
+ + ++ + SG++T+ D+VLPLPG V+YP ND+ + +A ++G ++
Sbjct: 584 -PYVRARPLSKEEAESGRFTVFDIVLPLPGYDVVYPSNDIGKFMETFMASEEGGDIDP-- 640
Query: 381 HNVKE-FSITSMTGNYRRVFQKPMDFEWELL---TYIDGNKPLAETDLDKIAKAKLVNIV 436
HN++ + S++G YR++ +P+ E++ Y D N+ + ETDL+K+ + V
Sbjct: 641 HNMRRGWKDISLSGGYRKIMSRPLGNGAEVVDVKAYSDENEQMVETDLEKLGGSG-VQAT 699
Query: 437 KEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQ 496
K E N +AA ++ +
Sbjct: 700 KHE-----------------------------GNGDAAIHQD-----------------R 713
Query: 497 MALKLGLTLPSSCYATMAIRELLK 520
+A+ L L L SS YATMA+REL K
Sbjct: 714 IAVVLKLQLGSSQYATMALRELTK 737
>gi|361126363|gb|EHK98369.1| putative Multisubstrate pseudouridine synthase 7 [Glarea lozoyensis
74030]
Length = 965
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 161/480 (33%), Positives = 247/480 (51%), Gaps = 77/480 (16%)
Query: 9 KERGDNPFD----SRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFA 64
K R NP + SRG W E G++L F LYKENKDT E ++++ L + + G A
Sbjct: 286 KPRAPNPRNQKGMSRGKVGWNELGGEYLHFTLYKENKDTMEVASILAQALKVNKNTIGHA 345
Query: 65 GTKDKRSVSTQRVTVFKQRASKLAALNKRLIGI---RLGDFCYVKEGLLLGQLLGNRFTI 121
GTKD+R+ +TQR++V + A+ A +N G+ R+G+F Y K GL LG+L GN+FTI
Sbjct: 346 GTKDRRAATTQRMSVPRLLAANAAKVNYGPRGLRFARIGNFKYEKYGLELGELKGNQFTI 405
Query: 122 TLRGV------VVDSED-------VIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGAT 168
TLR +D E V+ S L +GF+NY+G+QRFG+ V T +G
Sbjct: 406 TLRDCHFGDDSSLDEESRLKLANKVVGESVRQLQEDGFLNYYGMQRFGTFGVGTDEIGKK 465
Query: 169 LLRGEWKSAVKMILD-------------PREGERNEISKAREY----YKETDDIDGTLRK 211
+L+G+++ AV+ I+ P + N+ R + + T + L K
Sbjct: 466 ILKGDFQGAVESIMSYSDETLAYALRDTPTTDQVNKDDVDRAHAIHIFNTTGNSRNALEK 525
Query: 212 LPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTE 271
LPR AE +I++ L ++L A+ +I R LR+MYVH+YQS +WN A S R K+G +
Sbjct: 526 LPRKFNAEASIIRTLGSQKNDHLSAIMSIARNLRLMYVHAYQSKVWNLAVSQRWTKYG-K 584
Query: 272 HVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETD----HPDGR---- 323
VV GDL+ + S A +++ DEV E H +G
Sbjct: 585 QVVEGDLILIE-------------------SRAAIEAAKRDEVDENGEVVVHAEGGDAGY 625
Query: 324 -----HNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVY-HHLAEKDGINLT 377
+ + V+A ++ SGKYTI D+VLP PG + YP ND+ + Y ++ G NL
Sbjct: 626 TKEEIFDRARPVSAEEVASGKYTIYDIVLPTPGWDIEYPQNDIGDFYKEYMGSDAGGNLD 685
Query: 378 ES--LHNVKEFSITSMTGNYRRVFQKPMD-FEWELLTYIDGNKPLAETDLDKIAKAKLVN 434
+ K+F S++G+YR++ K D +++ +Y + + ETDL+ + K K N
Sbjct: 686 PANMRRPNKDF---SLSGSYRKMMAKVSDNCTFDVRSYRAETEQMVETDLELLNKLKHAN 742
>gi|350418733|ref|XP_003491949.1| PREDICTED: pseudouridylate synthase 7 homolog [Bombus impatiens]
Length = 732
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 167/532 (31%), Positives = 260/532 (48%), Gaps = 95/532 (17%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+W ++ G++ F L+K N DT +AL ++ L + P +F +AGTKD+R+ +TQ V+V K
Sbjct: 234 DWKKR-GEYCYFLLHKVNMDTMDALNQLAMNLHLRPNNFSYAGTKDRRAWTTQWVSVRKV 292
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
+ + K + G +G+F + E L LG L GN F I LR V E + K SL
Sbjct: 293 LPTDILRAAKNVRGAYVGNFKFETESLKLGMLNGNSFRIALRNVSGTDEQIEKTMI-SLR 351
Query: 143 RNGFINYFGLQRFGS-GSVPTHLVGATLLRGEWKSAVKMILDPREGERNE-ISKAREYYK 200
+GFINY+GLQRFG+ ++PT+ +G LL+G+W A+ +IL PRE E++E + +AR+ Y+
Sbjct: 352 DHGFINYYGLQRFGTVATIPTYEIGKALLQGKWNEAINLILKPREEEQDEDLVEARKIYE 411
Query: 201 ETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQ-ALKAIPRTLRMMYVHSYQSFLWNH 259
+T D ++ R+ E +L+ L + Q AL +IPR R+MY+H+YQSF+WN+
Sbjct: 412 KTKDASAAYNRIRRYDKIEATLLKGLSISGIHNPQGALDSIPRNARLMYIHAYQSFVWNY 471
Query: 260 AASARVQKHGTEHVVVGDLVF---CKGDDTEKEL-----------GCVNP-----EFEYE 300
S R+++ G + +VGDLV+ K +D E E G P E E
Sbjct: 472 MVSRRIKEFG-RNPIVGDLVYGKNVKHNDNEGEFVYDNGSELATEGNEEPIKKISRLESE 530
Query: 301 SSND------ADDSSHLDEVPETDHPDGRHNL--VKTVTAADINSGKYTIDDVVLPLPGS 352
D ++ + E D D +NL VK + D+++ YT+ DV++PL G
Sbjct: 531 MDVDVKIEKSSESTQQSGTTSEKDESDDSYNLPMVKILEEEDLSN--YTLADVLMPLVGW 588
Query: 353 RVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTY 412
+V YP + KDG+ N K ++ G YRR+ Q P + W + Y
Sbjct: 589 KVTYPPY-AKPWFDEFLAKDGLTTDLRQKNKK----YNLGGAYRRILQIPSNLSWNITHY 643
Query: 413 IDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNE 472
+ + L D+D+ M++S + D K
Sbjct: 644 SEKHSDLIMCDMDE---------------------------MRRSSAPKNDPK------- 669
Query: 473 AACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTS 524
G+ AL + ++L SS YATMA+RE+LK+ TS
Sbjct: 670 ---------------------GQYKALIIEMSLKSSTYATMALREILKSDTS 700
>gi|194865878|ref|XP_001971648.1| GG14316 [Drosophila erecta]
gi|190653431|gb|EDV50674.1| GG14316 [Drosophila erecta]
Length = 734
Score = 225 bits (573), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 153/505 (30%), Positives = 247/505 (48%), Gaps = 69/505 (13%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G ++ F ++K N T + ++ L + P ++G KDKR+ +TQ+ ++ ++ +
Sbjct: 236 GDYVTFLVHKTNLVTSDVASTLASRLNLRPSQVNYSGIKDKRAKTTQKFSIKRRTPESIL 295
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ +++G+F + L LG L GNRF I LR + + D I+ + SL GFIN
Sbjct: 296 GAARCQRNVQIGNFGFESNTLKLGDLQGNRFRIALRHIAKEKRDEIEQALQSLKERGFIN 355
Query: 149 YFGLQRFG-SGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDDIDG 207
Y+GLQRFG S SVPT+ VG LL+ ++K A ++IL PR+ + + RE + + D
Sbjct: 356 YYGLQRFGNSASVPTYEVGVALLKHDYKLACELILKPRDSDVEFMRPIREEWWKNRDSAA 415
Query: 208 TLRKLPRHLVAERAILQCLKKC-PGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQ 266
K+ E+ +L L K +Y AL+ IPR M+Y H+YQS ++N AS R++
Sbjct: 416 AAAKIYGEKFIEKKLLDGLAKFGESDYSSALRQIPRNTLMLYPHAYQSLIFNRIASRRIK 475
Query: 267 KHGTEHVVVGDLVFCKGD---DTEKELG---CVNPEFEYESSNDADDSSHLDEVPETDHP 320
+ G + ++ GDLV+ + D D E EL ++ + E E +++ +++ DE E +
Sbjct: 476 EFGLK-LIPGDLVYVEQDQPEDVEAELQQSEALDEQKEEEPNDEPMEAAKEDEAIEEESV 534
Query: 321 DGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESL 380
R V+ +TA DI SGKY + DVVLPLPG + YP N+ Y L + G++ +
Sbjct: 535 FKRK--VRPLTAEDIASGKYKLSDVVLPLPGHDITYPANECGAWYEELLAEVGLSSDQLK 592
Query: 381 HNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEE 440
H K + ++ G YR++ D +W Y
Sbjct: 593 HKEKTY---ALAGAYRKMIISSSDLKWSFRMY---------------------------- 621
Query: 441 AVCGNKEKDPSDCMKQSE-SLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMAL 499
P D + S+ L K+I ++ E A+++ MAL
Sbjct: 622 -------NTPEDTLIASDWELLKNIPVTPE-------------------PAEAEANYMAL 655
Query: 500 KLGLTLPSSCYATMAIRELLKTSTS 524
L +LP++ YATM +RELLK TS
Sbjct: 656 LLEFSLPTAAYATMFLRELLKQDTS 680
>gi|242018039|ref|XP_002429490.1| tRNA pseudouridine synthase D, putative [Pediculus humanus
corporis]
gi|212514428|gb|EEB16752.1| tRNA pseudouridine synthase D, putative [Pediculus humanus
corporis]
Length = 611
Score = 225 bits (573), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 153/513 (29%), Positives = 242/513 (47%), Gaps = 106/513 (20%)
Query: 24 WPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQR 83
W +LG +L F L+K+N DT +A+ +++K L P + +AG KDKR+V++Q V+++
Sbjct: 176 WFLELGAYLHFVLFKQNLDTSQAINILAKYLKTKPSNLTYAGNKDKRAVTSQWVSMWHLD 235
Query: 84 ASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGR 143
A++L LN +L I +G+F Y L LG L GN F I LR V ++ D+I+ + N++
Sbjct: 236 ANRLKGLNNKLGNISVGNFKYTNSPLKLGNLKGNFFEIALRN-VKENNDLIEKALNTIKE 294
Query: 144 NGFINYFGLQRFG-SGSVPTHLVGATLLRGEWKSAVKMILDPREGE-RNEISKAREYYKE 201
NGFINYFGLQRFG S +PT+ +G L++ ++K+AV++IL PR + +++ +AR+ + E
Sbjct: 295 NGFINYFGLQRFGNSIEIPTYEIGKALVKADFKTAVELILKPRNCKVTDDLKEARKIWWE 354
Query: 202 TDDIDGTLRKLPR--HLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNH 259
T D + + + + +L K Y+ AL +IPR +R++Y+HS+QSFLWN
Sbjct: 355 TRDAKKAYQTIKSKDKTIEGKLLLGLAKHGKNAYVNALDSIPRNIRLLYLHSFQSFLWNK 414
Query: 260 AASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDH 319
S R+ K G V E ++
Sbjct: 415 VISKRINKFG------------------------------------------QNVLEDEN 432
Query: 320 PDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTES 379
VK + +I KY I D+V PLPG V YP N + Y L ++ +
Sbjct: 433 VSASKTSVKFLLKDEIQ--KYQITDIVYPLPGYNVSYPNNIIKVWYEELLKEYELTSENF 490
Query: 380 LHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEE 439
VK++ +M+G YR + + + W Y + + L +D+DK+
Sbjct: 491 NQVVKKY---AMSGAYRHIVKSIKNLTWNTCYYSEPEQDLILSDVDKL------------ 535
Query: 440 EAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMAL 499
NN+ E +S+G A+
Sbjct: 536 ------------------------------NNKLLTTSE------------NSEGNFKAI 553
Query: 500 KLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
L +L SS YATMA+RE+LK TS + +LN
Sbjct: 554 ILRFSLDSSTYATMALREILKIDTSNSHQASLN 586
>gi|194748975|ref|XP_001956916.1| GF24327 [Drosophila ananassae]
gi|190624198|gb|EDV39722.1| GF24327 [Drosophila ananassae]
Length = 722
Score = 225 bits (573), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 162/524 (30%), Positives = 245/524 (46%), Gaps = 67/524 (12%)
Query: 15 PFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVST 74
P RG W G+++ F ++K N DT E + ++ L + P + GTKDKR+ +T
Sbjct: 204 PKPGRGDNRWSFP-GEYVTFLVHKTNMDTVEVVSTLASRLNLRPSQVNYCGTKDKRAKTT 262
Query: 75 QRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVI 134
Q ++ ++ + ++ L + +G+F + L LG L GNRF I LR + D I
Sbjct: 263 QNFSIRRRSPDSILGASRCLRDVHVGNFGFRSTTLKLGDLQGNRFRIALRHIARDKRPDI 322
Query: 135 KASANSLGRNGFINYFGLQRFG-SGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEIS 193
+ + S+ GFINY+GLQRFG S SVPT+ VG LL+ ++K A ++IL PR+ + +
Sbjct: 323 ETTLESVKERGFINYYGLQRFGNSASVPTYEVGVALLKCDYKLACELILKPRDTDVEFLR 382
Query: 194 KAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKC-PGNYLQALKAIPRTLRMMYVHSY 252
RE + E D K+ E+ +L L K Y AL+ IPR + M+Y H+Y
Sbjct: 383 PIREEWWEKRDSAAAAAKIYSDKFIEKKLLDGLAKFGEAQYSTALRQIPRNMLMLYPHAY 442
Query: 253 QSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLD 312
QS+++N AS R+++ G + ++ GDLV+ + D ++ E + ADD S
Sbjct: 443 QSYIFNRIASKRIKEFGLK-LIPGDLVYVE-DLPPQQEEKEKLNEEEVAGESADDVSETT 500
Query: 313 EVPETDHPDGRHNL----VKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHH- 367
+ + ++ V+ +T DI SG++ I DVVLPLPG + YP N E Y
Sbjct: 501 PDAAEEDAEEEESIFKRKVRPLTEDDIASGQFKISDVVLPLPGHDITYPGNQCREWYDEM 560
Query: 368 LAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKI 427
LAE + LT L KE S+ G YR++ +P D +W Y L +D +++
Sbjct: 561 LAE---VGLTSELLKHKE-KTYSLGGAYRKLIIQPSDLKWSFRLYNTPEDTLIASDWERL 616
Query: 428 AKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESV 487
+ KEEEA
Sbjct: 617 RNIPITEEPKEEEA---------------------------------------------- 630
Query: 488 CGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTL 531
K MAL L +LP++ YATM +REL K TS A L
Sbjct: 631 -------KFMALLLEFSLPTAAYATMFLRELFKKDTSTAIQMHL 667
>gi|358398662|gb|EHK48013.1| hypothetical protein TRIATDRAFT_91430 [Trichoderma atroviride IMI
206040]
Length = 739
Score = 224 bits (572), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 169/538 (31%), Positives = 262/538 (48%), Gaps = 65/538 (12%)
Query: 28 LGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKL 87
+G++L F L+K+N+DT +A+ I+++L + P+ +AGTKD+R+ + QR +V R L
Sbjct: 212 IGEYLHFTLFKDNRDTMDAVNQIARILKVKPQVINYAGTKDRRASTVQRCSVRYTRDRSL 271
Query: 88 AALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDV-------------- 133
A +N +L GI GD+ Y + + LGQLLGN F IT++ + ED
Sbjct: 272 AGINGKLWGITTGDYEYKTDPIHLGQLLGNEFAITIKNCQILGEDSAKPVPEQADLMHAN 331
Query: 134 IKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL---------DP 184
++++ + + +G+INYFG QRFG+ + TH VG +L ++ A+ IL
Sbjct: 332 VQSALDHMTEHGWINYFGHQRFGTHQIGTHEVGKLILGDNYEGAINAILAYDEEIAQKAE 391
Query: 185 REGERNEISKAREY--------YKETDDIDGTLRKLPRHLVAERAILQCL----KKCPGN 232
EG NE +K EY ++ D++ + +PR AE +L+ L K+ +
Sbjct: 392 TEGIPNEPAKRDEYNRHLACMLFRTEKDVEKAIEIMPRRFAAEVCVLRHLNRQGKQSRRD 451
Query: 233 YLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGC 292
++ AL I R LR MY+H+ QS +WNHAAS R + HG E V+ GDLV + + T
Sbjct: 452 FVGALIHITRGLRSMYLHACQSHVWNHAASRRWELHG-EKVIKGDLVIVETEAT------ 504
Query: 293 VNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGS 352
P+ S D D ++ V + D + +T + SGKYT+ D+VLP PG
Sbjct: 505 --PQV---SGQDQDGDDIINPVNPVEDDDDIPLQARPLTEEEAASGKYTVYDIVLPTPGY 559
Query: 353 RVIYPMNDVAEVYHHLA--EKDGINLTESLHNV-KEFSITSMTGNYR----RVFQKPMDF 405
VIYP N++ E Y E++G + + +EF S+ G YR R KP
Sbjct: 560 DVIYPDNEIGEFYKDFMGREENGSLDPHKMRRMRREF---SLPGRYRKLMNRFLAKP--- 613
Query: 406 EWELLTYIDGNKPLAETDLD--KIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKD 463
E TY D + + TDLD K + + + + + PS K
Sbjct: 614 SVEFKTYSDDEEQMHPTDLDLIKADRKTGTHASNNKRSREDGDDARPSKVAKVEGENEAS 673
Query: 464 IKLSTENNEAACAK--EVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELL 519
+ S E AA AK E + + + D K A+ + L S YAT+ +REL+
Sbjct: 674 NQTSQEEGAAASAKVEETETTNAQESMEVDKPLKIAAI-VKFQLGRSAYATVTLRELM 730
>gi|453087360|gb|EMF15401.1| tRNA pseudouridine synthase D [Mycosphaerella populorum SO2202]
Length = 777
Score = 224 bits (572), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 183/573 (31%), Positives = 266/573 (46%), Gaps = 132/573 (23%)
Query: 19 RGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVT 78
RG +NW E G++L F LYKENKDT E L I+ L + + GFAGTKD+R V+ QRV+
Sbjct: 251 RGKQNWAELGGEYLHFSLYKENKDTMEVLYFIASQLKMNMKHLGFAGTKDRRGVTVQRVS 310
Query: 79 VFKQRASKLAALNKRLIGIRLGD-FCYVKEGLLLGQLLGNRFTITLRGVVV-------DS 130
+ ++ ALNK G R+G + Y L LG GN+F +TLR V D
Sbjct: 311 AHRVNRGRIEALNKHAKGWRVGGPWEYKNYELTLGMSNGNQFLLTLRDAHVGDPNEGGDM 370
Query: 131 EDVIK-------ASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILD 183
E ++ A A SL NG++NY+GLQRFG+ S+ TH VG +L+G+ K AV IL
Sbjct: 371 ETRLRNVKACAEAGAKSLSENGYLNYYGLQRFGTHSIGTHGVGMQILQGDLKGAVDSILA 430
Query: 184 PREG--ERNEISKAREYYKETDDIDGTLRKLPR--------------------------- 214
E + N++S++ TD + LRK+P+
Sbjct: 431 YDEALLQENQVSESGADSNGTDR-NVPLRKIPQDDINRATAIHAFRQSGTSSRALSILQG 489
Query: 215 -HLVAERAILQCLKK---------CPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASAR 264
AE+ ++ L K ++ AL I R LR+MYVH+YQSF+WN A R
Sbjct: 490 NRFSAEKGMITHLGKKDRQTGQRPNENDFQGALMTIQRNLRLMYVHAYQSFVWNMVAGKR 549
Query: 265 VQKHGTEHVVVGDLVFCKGDDTEKEL------GCVNPEFEYESSND-------ADDSSHL 311
+ HG + +V GDLV EKE G P+ E + + + D+ +
Sbjct: 550 WELHGAK-LVEGDLVVV----GEKEAAEGAPNGAAAPKDETDEHGEPIIHPSASADAGNP 604
Query: 312 DEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVY-HHLAE 370
E D P R + ++ + SG++ I DVVLPLPG VIYP N++ + Y +A
Sbjct: 605 GATGELDDPFVR---ARPLSKEEAESGRFNIFDVVLPLPGYDVIYPKNEIGQYYVDFMAS 661
Query: 371 KDGINLTESLHNVKEFSIT-SMTGNYRRVFQKPM--DFEWELLTYIDGNKPLAETDLDKI 427
++G L +N++ S S++G YR++ +P+ E E+ Y + L +TDLDK+
Sbjct: 662 EEGGKLDP--YNMRRTSKDFSLSGGYRKLMARPLGAGVEVEVKAYNTPEEQLVQTDLDKL 719
Query: 428 AKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESV 487
A HV+SV
Sbjct: 720 RSAG--------------------------------------------------KHVDSV 729
Query: 488 CGADSQGKQMALKLGLTLPSSCYATMAIRELLK 520
++ ++A+ L L L SS YATMA+REL K
Sbjct: 730 ANGATEKDKVAVILKLQLGSSQYATMALRELTK 762
>gi|195376359|ref|XP_002046964.1| GJ12196 [Drosophila virilis]
gi|194154122|gb|EDW69306.1| GJ12196 [Drosophila virilis]
Length = 686
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 159/531 (29%), Positives = 252/531 (47%), Gaps = 69/531 (12%)
Query: 3 RNSKKRKERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFG 62
R SK + R DN + N+P F+ F ++K N DT E ++ L + P
Sbjct: 198 RISKPKPGRSDNRW------NFPHD---FVCFLVHKVNMDTSEVASTLANRLTLRPSQVN 248
Query: 63 FAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTIT 122
+ GTKDKR+ +TQR + ++ +A + + + +G+F + + L LG L GNRF I
Sbjct: 249 YCGTKDKRAKTTQRFCIKRRTPEAIANAARGMGNVYIGNFSFRPDTLKLGDLKGNRFRIA 308
Query: 123 LRGVVVDSEDVIKASANSLGRNGFINYFGLQRFG-SGSVPTHLVGATLLRGEWKSAVKMI 181
LR + E I+++ SL GFINY+GLQRFG S SVPT+ VG LL+ ++K A ++I
Sbjct: 309 LRHITHPREH-IESALQSLKERGFINYYGLQRFGNSASVPTYEVGVALLKRDYKLACELI 367
Query: 182 LDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGN-YLQALKAI 240
L PR+ + + RE + E D K + E+ +L L N Y AL+ I
Sbjct: 368 LKPRDNDVEFMRAIREAWWENRDSAAAAAKFYGNKFIEKKLLDGLATYGENDYAAALRRI 427
Query: 241 PRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYE 300
PR + ++Y H+YQS ++N AS R+++ G + ++ GDLV+ + + ++ P E
Sbjct: 428 PRNMLLLYPHAYQSLIFNRIASRRIKEFGLK-LIPGDLVYVEDESGQEVKAPEEPVLSAE 486
Query: 301 SSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMND 360
S +D D + V+ ++A DI GKY + DVVLPLPG + YP N+
Sbjct: 487 SEEIVEDDLDGDADNLLEEESIFKRKVRPLSAEDIAGGKYKLSDVVLPLPGYDITYPNNE 546
Query: 361 VAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLA 420
A Y + + G++ + H K + ++ G YR++ + D +W Y L
Sbjct: 547 CAAWYEEMLAEVGLSSEQLRHKEKTY---ALGGAYRKLLIQTDDLKWSFRRYSTHEDTLI 603
Query: 421 ETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVK 480
+D +++ K+I+++ E
Sbjct: 604 ASDWEQL----------------------------------KNIEVTPE----------- 618
Query: 481 QPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTL 531
A+S+G+ AL L TLP++ YATM +REL K TS A L
Sbjct: 619 --------PAESEGEYTALLLEFTLPTAVYATMFLRELFKQDTSTASQMQL 661
>gi|327356876|gb|EGE85733.1| pseudouridine synthase TruD/Pus7 [Ajellomyces dermatitidis ATCC
18188]
Length = 745
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 159/529 (30%), Positives = 249/529 (47%), Gaps = 102/529 (19%)
Query: 36 LYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLI 95
L +ENKDT E + +++ + + + FGFAGTKD+R V+ QR + ++ A +L + K L
Sbjct: 261 LERENKDTMEVVTFLARQMKMNAKQFGFAGTKDRRGVTVQRASAYRIYADRLLNVGKSLR 320
Query: 96 GIRLGDFCYVKEGLLLGQLLGNRFTITLR--------------GVVVDSEDVIKASANSL 141
+GDF Y L LG L GN F ITLR V + ++ S L
Sbjct: 321 NAAVGDFEYRTNRLELGDLNGNEFIITLRDCQFPFDLKEEGLPNAVSKATKIVSQSLRDL 380
Query: 142 GRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL--DPR-------------E 186
G+ NY+GLQRFG+ S T VG +L+G++K A + IL +P+ +
Sbjct: 381 RERGYFNYYGLQRFGTFSTRTDTVGLKMLQGDFKGACECILHFNPQALAASQSQTQANAQ 440
Query: 187 GERNEISK---AR----EYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKA 239
G + IS AR ++ T + L KLPR AE I++ L + +Y AL
Sbjct: 441 GSKTLISADDIARAEGIHIFQTTGKSNPALDKLPRKFSAESNIIRHLGRNKNDYFGALGT 500
Query: 240 IPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEY 299
IPR LR+MYVH+YQS +WN AAS R + +G + VV GDLV + +G E+
Sbjct: 501 IPRGLRLMYVHAYQSLVWNFAASHRWRLYG-DKVVAGDLVLINDFKEKDGVGAAAVVEEF 559
Query: 300 ESSND-------ADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGS 352
++ D D ++ DE+ E + +TA + SG+YTI D+VLPLPG
Sbjct: 560 DADGDVVVLPDAGDSANAADEMFER---------ARALTAEEAASGRYTIFDIVLPLPGF 610
Query: 353 RVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMD-FEWELLT 411
++YP N++ Y + + + + S++G YR++ KP + + +E+
Sbjct: 611 DILYPDNEMTTFYKQFMGSERGGKLDPFDMRRSWKDISLSGGYRKLLSKPGEAYSFEVKA 670
Query: 412 YIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENN 471
Y ++ +TDLD++ ++ E + G +K+ +D
Sbjct: 671 YTKDDEQFVQTDLDRLKES-----WNGHEEIAGPADKEAAD------------------- 706
Query: 472 EAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLK 520
++A+ + L L SS YATMA+REL+K
Sbjct: 707 ------------------------KLAVIIKLQLGSSQYATMALRELMK 731
>gi|443897626|dbj|GAC74966.1| uncharacterized conserved protein [Pseudozyma antarctica T-34]
Length = 789
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 171/578 (29%), Positives = 275/578 (47%), Gaps = 141/578 (24%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGIL------------------------PRSFGFAGT 66
++ F L+K N+D QEA+G++++ L + + AGT
Sbjct: 263 YIHFLLHKTNRDHQEAMGMLAESLRLGGGGGARGRGRGRGGFGGRGGGRPPTKDLSVAGT 322
Query: 67 KDKRSVSTQRVTVFKQRAS-------------KLAA------------------LNKRL- 94
KDKR+V+ QRV++ + R + +AA ++KR
Sbjct: 323 KDKRAVTVQRVSLKRNRKTLDDVYRLVNGINADIAAGADANAKGKGKGRTVTDVVSKRAD 382
Query: 95 IGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVV------VDSEDV--IKASANSLGRNGF 146
G+R+G Y + L LGQL GN FTITLR V VD V ++AS + + GF
Sbjct: 383 RGLRIGHLEYASQPLKLGQLKGNEFTITLRNVRPSTGGEVDDAFVSGVRASMDVIRDQGF 442
Query: 147 INYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPR--------EGERNEISKAREY 198
+NYFG+QRFG+G++PTH +G +L+ ++K AV++++ PR +G+ ++ +A++
Sbjct: 443 VNYFGMQRFGTGAIPTHHIGILILKNDFKQAVELLMTPRAASGPDADDGDSADLLRAKQL 502
Query: 199 YKETDDIDGTLRKLPRHLVAERAILQCLKK---CPGNYLQALKAIPRTLRMMYVHSYQSF 255
Y E +++ +PRH VAE+ IL ++ G++ A +PRTLR+MYVH+YQS+
Sbjct: 503 YGE-GELEKAYLAVPRHCVAEKHILDKMRSNRWNQGDWTGAFGNVPRTLRLMYVHAYQSY 561
Query: 256 LWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVP 315
+WN S R+ + GT+ V GD+VF D + + + +D ++ E+
Sbjct: 562 VWNRLVSERISRFGTQ-AVEGDVVFTNNTDDWDTQSTAHDAEDADEDDDDLRNAK-PELA 619
Query: 316 ETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGIN 375
P K ++ AD++S +I DVVLPLPGS + P ++E+YH + DG+
Sbjct: 620 TWQRP------TKQLSGADLSSA--SIYDVVLPLPGSSIELPEGWMSELYHTILSADGLT 671
Query: 376 LTE-SLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVN 434
+ S + E+ + G+YRR+ +P FE+ + Y D + L TD ++
Sbjct: 672 HAQLSASKIPEY---QLRGSYRRMLVRPRAFEYNITQYTDPDIALTLTDEER-------- 720
Query: 435 IVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQG 494
C+ S +T N +AA A +
Sbjct: 721 ------------------CLGIS---------TTTNADAAEAGQ---------------- 737
Query: 495 KQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
K AL L LPSS YATM +RE LK+ T+ H+ L
Sbjct: 738 KFTALTLKFQLPSSSYATMLMREALKSDTASFKHRQLT 775
>gi|383863416|ref|XP_003707177.1| PREDICTED: LOW QUALITY PROTEIN: pseudouridylate synthase 7 homolog
[Megachile rotundata]
Length = 771
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 147/466 (31%), Positives = 246/466 (52%), Gaps = 53/466 (11%)
Query: 6 KKRKERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAG 65
+K+ R F ++W + G++ F L+K N DT +AL ++ L + P +F +AG
Sbjct: 212 RKKDNRDCQIFHRDNRKDWKNRDGEYCYFLLHKVNMDTMDALNQLAMNLRMKPNNFNYAG 271
Query: 66 TKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRG 125
KD+R+ +TQ V++ K S + K + G +G+F +VKE L LG L GN F I LR
Sbjct: 272 MKDRRAWTTQWVSLRKVEPSDILRAAKCVRGAYVGNFKFVKEPLKLGMLSGNHFRIALRN 331
Query: 126 VVVDSEDVIKASANSLGRNGFINYFGLQRFGS-GSVPTHLVGATLLRGEWKSAVKMILDP 184
V +++ I+ + SL GFINY+GLQRFG+ ++PT+ +G TLL+G+W A+++IL P
Sbjct: 332 -VSGTDEQIEQTMTSLRDQGFINYYGLQRFGTVAAIPTYEIGKTLLQGKWNEAIELILKP 390
Query: 185 REGERN-EISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQ-ALKAIPR 242
REGE++ ++ +AR Y+ T D +K+ R E A+L+ + N Q AL ++PR
Sbjct: 391 REGEQDRDLVEARRIYEMTKDAYAAYKKIKRSDKIEAALLKGIYTSGNNNPQGALDSVPR 450
Query: 243 TLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESS 302
R+MY+H+YQS++WNH S R+++ GT+ +VGDLV+ ++T++ + E Y++
Sbjct: 451 NTRLMYIHAYQSYVWNHMVSRRIKEFGTK-PIVGDLVY--ENNTQQR---DHDEAVYDNE 504
Query: 303 NDADDSSHLDEVPET--DHPDGRHNLVKTVTAA-------DINSGK-------------- 339
+D++ +E + D +K +T+A D N+ K
Sbjct: 505 RVIEDTAESNENTDKLEDESXSTSTSIKEITSATESCLKIDENTEKSKTTTEESECEDLY 564
Query: 340 ---------------YTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVK 384
YT+ DV++P G +V YP + KDG+ N K
Sbjct: 565 NLSPVKILKEEDLPNYTLADVLMPQVGWKVTYPPY-AKPWFDEFLAKDGLTTDLRQKNKK 623
Query: 385 EFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKA 430
S+ G YR++ Q P + W+++ Y + + L D+D++ K+
Sbjct: 624 ----YSLGGTYRKILQIPSNLSWKIMHYKEKHSDLIMCDIDEMRKS 665
>gi|426357471|ref|XP_004046062.1| PREDICTED: pseudouridylate synthase 7 homolog [Gorilla gorilla
gorilla]
Length = 633
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 113/270 (41%), Positives = 167/270 (61%), Gaps = 4/270 (1%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+WP+ G + F LYKENKDT +A+ ++SK L + P F + GTKDKR+++ Q + V K
Sbjct: 255 SWPKSRGSYCHFVLYKENKDTMDAINVLSKYLRVKPNIFSYMGTKDKRAITVQEIAVLKI 314
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
A +LA LNK L+ +LG+F Y K L LG+L GN FT+ LR + +++ ++ + NSL
Sbjct: 315 TAQRLAHLNKCLMNFKLGNFSYQKNPLKLGELQGNHFTVVLRN-ITGTDNQVQQAMNSLK 373
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKE 201
GFINY+G+QRFG+ +VPT+ VG +L+ W + +IL PR G E+ + K RE + +
Sbjct: 374 EIGFINYYGMQRFGTTAVPTYQVGRAILQNSWTEVMDLILKPRSGAEKGYLVKCREEWAK 433
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKKCP-GNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
T D LRKLP E +L+ L K N + A IPR R+MY+HSYQS++WN+
Sbjct: 434 TKDPTAALRKLPVKRCVEGQLLRGLSKYGMKNIVSAFGIIPRNNRLMYIHSYQSYVWNNM 493
Query: 261 ASARVQKHGTEHVVVGDLVFCKGDDTEKEL 290
S R++ +G + V GDLV + +E+
Sbjct: 494 VSKRIEDYGLKP-VPGDLVLKGVQEAYREM 522
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 76/185 (41%), Gaps = 61/185 (32%)
Query: 348 PLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEW 407
P+PG V + V E Y + D +++ H ++++S ++G YR++ +P + W
Sbjct: 505 PVPGDLV---LKGVQEAYREMLTADNLDIDNMRHKIRDYS---LSGAYRKIIIRPQNVSW 558
Query: 408 ELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLS 467
E++ Y D PL TD+D +
Sbjct: 559 EVVAYDDPKIPLFNTDVDNL---------------------------------------- 578
Query: 468 TENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAF 527
E K P V + S+GK ALK+ +LP S YATMAIRE+LK TS+
Sbjct: 579 ----------EGKTPPVFA-----SEGKYRALKMDFSLPPSTYATMAIREVLKMDTSIKK 623
Query: 528 HKTLN 532
LN
Sbjct: 624 QTQLN 628
>gi|169599272|ref|XP_001793059.1| hypothetical protein SNOG_02454 [Phaeosphaeria nodorum SN15]
gi|160704569|gb|EAT90666.2| hypothetical protein SNOG_02454 [Phaeosphaeria nodorum SN15]
Length = 821
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 153/463 (33%), Positives = 220/463 (47%), Gaps = 65/463 (14%)
Query: 18 SRG-SENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQR 76
SRG + W E G++L F LYKENKDT E +G + LG ++FGFAGTKD+R+ + QR
Sbjct: 312 SRGKGQQWEELGGEYLHFSLYKENKDTMEIVGFLGSKLGGGSKAFGFAGTKDRRACTVQR 371
Query: 77 VTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSED---- 132
V V +Q A ++ + NK L +GD+ Y L LG L GN FTITLR +E+
Sbjct: 372 VCVKRQTAERMYSFNKILYNAAIGDWKYEPYNLTLGDLKGNEFTITLRDCHFQNEEGLDF 431
Query: 133 ---------VIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMI-- 181
V++ + GFINY+GLQRFGS + T +G +L+ + K AV I
Sbjct: 432 AQRRQLADTVVRKAIEDFSEKGFINYYGLQRFGSFAASTDAIGCKMLQDDLKGAVDDILA 491
Query: 182 -----LDPREG-------------ERNEISKAREYYKETDDIDGTLRKLPRHLVAERAIL 223
L EG +RN +KA ++ L LPR AER I+
Sbjct: 492 YSDVALAAAEGTLPEDSTILVSQDDRNR-AKALHLWRTEGKGGPALDLLPRKFTAERNII 550
Query: 224 QCLKK---------CPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVV 274
Q L ++ AL IPRTLR+MYVH+YQS +WN A R H + V+
Sbjct: 551 QHLNSRNSRNGQHDRKSDWQGALMTIPRTLRLMYVHAYQSLVWNVVAGHRWALHA-DKVI 609
Query: 275 VGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNL-------- 326
GDLV + P+ + D DD+ + +P G N
Sbjct: 610 PGDLVLVNEHKDKVPSSAPAPQ-----ARDIDDNGEV-----VINPTGSENANAGAQDFE 659
Query: 327 -VKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKE 385
+ +TA + SG YT+ DVVLP PG V YP ND+ Y D + + +
Sbjct: 660 RARALTADEAASGLYTVWDVVLPQPGYDVEYPQNDIGAFYKSFMASDKGGKLDPMDMRRG 719
Query: 386 FSITSMTGNYRRVFQKPMD-FEWELLTYIDGNKPLAETDLDKI 427
+ S++G YR+ KP+ E+++ Y+ ++ TD+ ++
Sbjct: 720 WREVSLSGGYRKFLAKPLKPLEFQVHEYVKPDEQFVVTDMQRL 762
>gi|195588771|ref|XP_002084131.1| GD14097 [Drosophila simulans]
gi|194196140|gb|EDX09716.1| GD14097 [Drosophila simulans]
Length = 732
Score = 222 bits (565), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 156/527 (29%), Positives = 248/527 (47%), Gaps = 72/527 (13%)
Query: 15 PFDSRGSENW--PEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSV 72
P RG + W P ++ F ++K N T + ++ L + P ++G KDKR+
Sbjct: 221 PKPGRGDKRWSFP---ADYVTFLVHKTNLVTSDVASTLAARLNLRPSQVNYSGIKDKRAK 277
Query: 73 STQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSED 132
+TQ+ +V ++ + + + +G+F + L LG L GNRF I LR + + +
Sbjct: 278 TTQKFSVKRRTPESILVAARSQRNVNIGNFGFESNTLKLGDLQGNRFRIALRHIAKEKRE 337
Query: 133 VIKASANSLGRNGFINYFGLQRFG-SGSVPTHLVGATLLRGEWKSAVKMILDPREGERNE 191
I+ + SL GFINY+GLQRFG S SVPT+ VG LL+ ++K A ++IL PR+ +
Sbjct: 338 EIERALQSLKERGFINYYGLQRFGNSASVPTYEVGVALLKNDYKLACELILKPRDSDVEF 397
Query: 192 ISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKC-PGNYLQALKAIPRTLRMMYVH 250
+ RE + + D ++ E+ +L L + +Y AL+ IPR + M+Y H
Sbjct: 398 LRPIREEWWKNRDSAAAAAQIYGEKFIEKKLLDGLARFGESDYSSALRQIPRNMLMLYPH 457
Query: 251 SYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEK-ELGCVNPEFEYESSNDADDSS 309
+YQS ++N AS R+++ G + ++ GDLV+ + + E E E E D +
Sbjct: 458 AYQSLIFNRIASRRIKEFGLK-LIPGDLVYVEQEQPEAVEEQAQQCEALEEQKEDEPNDE 516
Query: 310 HLDEVPETDHPDGRHNL----VKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVY 365
L EVPE D ++ V+ +TA DI SGKY + DVVLPLPG + YP N+ Y
Sbjct: 517 PL-EVPEGDEAIEEESVFKRKVRPLTAEDIASGKYKLSDVVLPLPGHDITYPSNECGAWY 575
Query: 366 HHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLD 425
+ + G++ + H K + ++ G YR++ D +W Y
Sbjct: 576 EEMLAEVGLSSDQLKHKEKTY---ALAGAYRKMIISSSDLKWSFRMY------------- 619
Query: 426 KIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSE-SLSKDIKLSTENNEAACAKEVKQPHV 484
P D + S+ L K+I ++ E
Sbjct: 620 ----------------------NSPEDTLIASDWELLKNIPVAPE--------------- 642
Query: 485 ESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTL 531
A+++ MAL L +LP++ YATM +RELLK TS A L
Sbjct: 643 ----PAEAEANYMALLLEFSLPTAAYATMFLRELLKQDTSSASQTQL 685
>gi|397568674|gb|EJK46271.1| hypothetical protein THAOC_35066 [Thalassiosira oceanica]
Length = 509
Score = 222 bits (565), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 172/578 (29%), Positives = 265/578 (45%), Gaps = 146/578 (25%)
Query: 6 KKRKERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILP-RSFGFA 64
K RK R D + + WP FLRF +YKEN DT A I +M + P R +A
Sbjct: 15 KGRKRRVD-----KNAPPWPADRPDFLRFVVYKENIDTSTAAKDIVRMAHLNPKRGISYA 69
Query: 65 GTKDKRSVSTQRVTVFKQRASKLAALNKRLIG--------------IRLGDFCYVKEGLL 110
G KDKR V++Q + ++ +L A+N+ L G I++G+F Y + +
Sbjct: 70 GMKDKRGVTSQFCSAYRATKEQLLAVNRSLAGPKHGGNTSTRGASVIKVGNFSYSSDEVR 129
Query: 111 LGQLLGNRFTITLRGVVVD-SEDVI------------KASANSLGRNGFINYFGLQRFGS 157
LGQL GNRF + LR V + ++D++ +A+ +L GF+NYFG+QRFG
Sbjct: 130 LGQLKGNRFDVVLRNVDIGLADDIVGDAKTKLVHERLEAAGKALKSRGFVNYFGMQRFGK 189
Query: 158 GSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKA----REYYKETDDID------- 206
TH VG +L+G+ + AV +I+ + + NE +++ K D+D
Sbjct: 190 FR-DTHEVGICILKGDHEGAVDVIMREKGNDSNEYQNTAVARKKWAKRFADVDLSDEEAA 248
Query: 207 ---------GTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLW 257
LR L R +V E++I+ L + P +Y +A A+ + +R M++H+YQS++W
Sbjct: 249 KDAEMAVAKDVLRSLGRFMVCEKSIVSSLSRNPRDYKRAFGAVSKQMRSMFLHAYQSYIW 308
Query: 258 NHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPET 317
N AS RV+ G VGD+V + D + L
Sbjct: 309 NKVASMRVETGGYS-AQVGDVVLTE-DKSASGL--------------------------- 339
Query: 318 DHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLT 377
R VK +TA D+ + Y+I DVVLPL G +V++P +++ L ++DGIN
Sbjct: 340 -----RGKSVKILTADDVQN--YSITDVVLPLVGGKVVFPEGLSGDLFVELMKEDGIN-R 391
Query: 378 ESLHNV----KEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLV 433
E V KE S+ G+YR++ KP D +E+ Y D +PL ETDL K K+
Sbjct: 392 EMFAKVGAVDKEL---SLGGDYRKLICKPSDVTFEIKQYTDPVQPLLETDLMKSIGEKVA 448
Query: 434 NIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQ 493
+V+E+ ++E+ EA
Sbjct: 449 PVVREK---------------------------ASESPEAIL------------------ 463
Query: 494 GKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTL 531
+ +G +LP S YAT+A+REL K TS + L
Sbjct: 464 ---YGMVVGFSLPPSSYATIAMRELTKRPTSSEYQSML 498
>gi|358386957|gb|EHK24552.1| hypothetical protein TRIVIDRAFT_30039 [Trichoderma virens Gv29-8]
Length = 747
Score = 221 bits (562), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 172/544 (31%), Positives = 266/544 (48%), Gaps = 79/544 (14%)
Query: 28 LGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKL 87
+G++L F L+K+N+DT +A+ I+++L + P+ +AGTKD+R+ + QR +V R L
Sbjct: 222 IGEYLHFSLFKDNRDTMDAVNQIARILKVKPQVINYAGTKDRRASTVQRCSVRYTRDRSL 281
Query: 88 AALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSE----------DVIKAS 137
A +N +L GI GD+ Y E + LG+LLGN F IT++ + E D+++A+
Sbjct: 282 AGINGKLWGITTGDYEYKSEPIHLGELLGNEFAITIKNCQIVGEASASPVSEQVDLMRAN 341
Query: 138 ANS----LGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL---------DP 184
S + +G+INYFG QRFG+ + TH VG +L ++ A+ IL
Sbjct: 342 VQSALDHMTEHGWINYFGHQRFGTHQIGTHEVGKLILGENYEGAINAILAYDEEIAQKAE 401
Query: 185 REGERNEISKAREY--------YKETDDIDGTLRKLPRHLVAERAILQCL----KKCPGN 232
EG +E +K EY +K D++ + +PR AE +L+ L K+ +
Sbjct: 402 TEGIPDEPAKRDEYSRHLACMLFKTEKDVEKAIEIMPRRFSAEVCVLRHLNRQGKQSRRD 461
Query: 233 YLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGC 292
++ AL I R LR MY+H+ QS +WNHAAS R + +G E V+ GDLV + + T
Sbjct: 462 FVGALIHITRGLRSMYLHACQSHVWNHAASRRWELYG-EKVIKGDLVIIETEAT------ 514
Query: 293 VNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGS 352
P+ S D D ++ V + D R + +T + +SGKYT+ D+VLP PG
Sbjct: 515 --PQV---SGQDQDGDDIINPVEDDDDVPLR---ARPLTEEEASSGKYTVHDIVLPTPGY 566
Query: 353 RVIYPMNDVAEVYHHLA--EKDGINLTESLHNV-KEFSITSMTGNYR----RVFQKPMDF 405
VIYP N++ E Y E++G + + +EF S+ G YR R KP
Sbjct: 567 DVIYPDNEIGEFYTEFMGREENGALDPHKMRRMRREF---SLPGRYRKLMNRFLAKP--- 620
Query: 406 EWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMK---------- 455
E TY+ + + TDLD I A+ + G+ + PS K
Sbjct: 621 SVEFKTYMSDEEQMHPTDLDLIRSARKTGGGNKRSRDEGDDAR-PSKVAKVEGEEVQGAT 679
Query: 456 QSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAI 515
QSE + D E E A + +E Q ++A + L S YAT+ +
Sbjct: 680 QSEDAANDAATGAEKTEEAPEATAAEEAMEV-----DQPLKIAAVIKFQLGRSAYATVTL 734
Query: 516 RELL 519
REL+
Sbjct: 735 RELM 738
>gi|400602625|gb|EJP70227.1| tRNA pseudouridine synthase D [Beauveria bassiana ARSEF 2860]
Length = 698
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 156/476 (32%), Positives = 233/476 (48%), Gaps = 70/476 (14%)
Query: 6 KKRKERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAG 65
KKR G D+ ++L F LYK+N+DT +A+ I++M+ P+S G+AG
Sbjct: 184 KKRNRGGAQQRDNNRERKDNRPAAEYLHFTLYKDNRDTMDAVTQIARMIRSKPQSIGYAG 243
Query: 66 TKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRG 125
TKD+R+ + QR ++ LA LN L GI G++ Y EG+ LGQLLGN F ITL+
Sbjct: 244 TKDRRASTAQRCSIRYTHQRSLAGLNGNLWGITTGNYEYRDEGIHLGQLLGNEFVITLKN 303
Query: 126 VVVDSE-------------DVIKASANS----LGRNGFINYFGLQRFGSGSVPTHLVGAT 168
V E +++K++ + + +G+INYFG QRFG+ + TH +G
Sbjct: 304 CKVVDESGGDSAKPLAEQLELLKSNVGTALEHMAAHGWINYFGHQRFGTHRIGTHEIGKL 363
Query: 169 LLRGEWKSAVKMIL------------------DPREG--ERNEISKAREY----YKETDD 204
+L +++ AV +L D ++G + N AR + ++ D
Sbjct: 364 ILGDKYEEAVHALLTYDPELAAKYETAAAAAADQQDGSSKTNMEELARHHACMLFRTGKD 423
Query: 205 IDGTLRKLPRHLVAERAILQCLKKCPG----NYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
+PR AE + + L + +++ +L I R LR MY+H+YQS +WNHA
Sbjct: 424 PQKAASMMPRRFAAEVCVTRHLTRGGASSIRDFVGSLTHITRGLRSMYLHAYQSHVWNHA 483
Query: 261 ASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHP 320
AS R ++HG+ VV GDLV D T G D DD + P D
Sbjct: 484 ASMRWERHGSS-VVAGDLVIADDDATPLHGG---------KDQDGDDIIN----PVADDD 529
Query: 321 DGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHL---AEKDGINLT 377
DG + +TA + SG+YTI DVVLP PG +V+YP ND+ Y AE ++
Sbjct: 530 DGAPVRARPLTAEEAASGRYTIHDVVLPTPGYQVVYPENDIGAFYAEFMGRAENGSLDPR 589
Query: 378 ESLHNVKEFSITSMTGNYRRV---FQKPMDFEWELLTYIDGNKPLAETDLDKIAKA 430
+ + +EF S+ G YR+V F P E+ TY D + + TDLD + A
Sbjct: 590 KMMRMRREF---SLPGRYRKVMNRFLAPPSIEFR--TYTDDKEQMHPTDLDVLKAA 640
>gi|198417871|ref|XP_002127940.1| PREDICTED: similar to pseudouridylate synthase 7 homolog isoform 2
[Ciona intestinalis]
Length = 595
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 156/500 (31%), Positives = 228/500 (45%), Gaps = 109/500 (21%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGIL-PRSFGFAGTKDKRSVSTQRVTVFKQRASKLAA 89
+ +F LYKEN T +A+ LI K L + R F +AG KDKR V+ Q VT +L
Sbjct: 158 YCKFVLYKENIATMDAVNLILKKLNLRHARCFQYAGNKDKRGVTVQEVTT-SISPERLVP 216
Query: 90 LNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINY 149
+N+ L IR+G+ K LG L GN+F+I +R + E +KA+ S + GFINY
Sbjct: 217 VNQILSNIRVGNLVSCKTAKRLGDLNGNQFSIVIRNTLDIEESDLKAAIKSFSQTGFINY 276
Query: 150 FGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDP--REGERNEISKAREYYKETDDIDG 207
FG+QRFG+ +VPT+ +G +++ W+ V +IL ++ I+ R ++E ++
Sbjct: 277 FGMQRFGTNNVPTYEIGKSIISSRWEETVDLILSSCFKDCSEETINLIRN-WREENNAKK 335
Query: 208 TLRKLPRHLVAERAILQCLKKC-PGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQ 266
KL R E +L + P +Q+L IPR RM+Y+HSYQSF+WN S R
Sbjct: 336 AFDKLNRRSSFEGYLLLGISHFGPKQLVQSLARIPRNTRMLYLHSYQSFVWNRIVSRRFL 395
Query: 267 KHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNL 326
G + VVGDLV D
Sbjct: 396 TFG-DSPVVGDLVLAGTD------------------------------------------ 412
Query: 327 VKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEF 386
V VT +I++ Y+I DV++PLPG +V YP N + Y + GI + H VKE+
Sbjct: 413 VVVVTEENIDN--YSIHDVIMPLPGHKVTYPTNSALQWYKDEFKAAGIEESMFDHKVKEY 470
Query: 387 SITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNK 446
+ G YR++ KP D EW+++ Y D KPL +D D I++ E G K
Sbjct: 471 ---YLPGAYRKIINKPNDVEWDIVKYNDYQKPLLASDKD---------ILQGGERPSGEK 518
Query: 447 EKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLP 506
+ GK AL++ +L
Sbjct: 519 D----------------------------------------------GKFTALRISFSLS 532
Query: 507 SSCYATMAIRELLKTSTSVA 526
SSCYAT+A+RE++K S A
Sbjct: 533 SSCYATVAMREVMKRDMSSA 552
>gi|21355799|ref|NP_648231.1| CG6745 [Drosophila melanogaster]
gi|7295083|gb|AAF50409.1| CG6745 [Drosophila melanogaster]
gi|17861720|gb|AAL39337.1| GH24787p [Drosophila melanogaster]
gi|220945652|gb|ACL85369.1| CG6745-PA [synthetic construct]
gi|220955444|gb|ACL90265.1| CG6745-PA [synthetic construct]
Length = 734
Score = 219 bits (558), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 154/526 (29%), Positives = 246/526 (46%), Gaps = 70/526 (13%)
Query: 15 PFDSRGSENW--PEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSV 72
P RG + W P ++ F ++K N T + ++ L + P ++G KDKR+
Sbjct: 222 PKPGRGDKRWSFP---ADYVTFLVHKTNLVTSDVASTLAARLNLRPSQVNYSGIKDKRAK 278
Query: 73 STQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSED 132
+TQ+ +V ++ + + + +G+F + L LG L GNRF I LR + + +
Sbjct: 279 TTQKFSVKRRTPESILVAARSQRNVHIGNFGFESNTLKLGDLQGNRFRIALRHIAKEKRE 338
Query: 133 VIKASANSLGRNGFINYFGLQRFG-SGSVPTHLVGATLLRGEWKSAVKMILDPREGERNE 191
I+ + SL GFINY+GLQRFG S SVPT+ VG LL+ ++K A ++IL PR+ +
Sbjct: 339 EIEQALQSLKERGFINYYGLQRFGNSASVPTYEVGVALLKHDYKLACELILKPRDSDVEF 398
Query: 192 ISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKC-PGNYLQALKAIPRTLRMMYVH 250
+ RE + + D ++ E+ +L L + +Y AL+ IPR + M+Y H
Sbjct: 399 LRPIREEWWKNRDSAAAAAQIYGEKFIEKKLLDGLARFGESDYSSALRQIPRNMLMLYPH 458
Query: 251 SYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSH 310
+YQS ++N AS R+++ G + ++ GDLV+ + D +E E + + +
Sbjct: 459 AYQSLIFNRIASRRIKEFGLK-LIPGDLVYVEQDQSEASEEQAQQGEALEEQKEEEPNDE 517
Query: 311 LDEVPETDHPDGRHNL----VKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYH 366
EVPE D ++ V+ +TA DI SGKY + DVVLPLPG + YP N+ Y
Sbjct: 518 PLEVPEGDEAIEEESIFKRKVRPLTAEDIASGKYKLCDVVLPLPGHDITYPSNECGAWYE 577
Query: 367 HLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDK 426
+ + G++ + H K + ++ G YR++ D +W Y
Sbjct: 578 EMLAEVGLSSDQLKHKEKTY---ALAGAYRKMIISSSDLKWSFRMY-------------- 620
Query: 427 IAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSE-SLSKDIKLSTENNEAACAKEVKQPHVE 485
P D + S+ L K+I ++ E EA
Sbjct: 621 ---------------------NTPEDTLIASDWELLKNIPVAPEPAEA------------ 647
Query: 486 SVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTL 531
+ MAL L +LP++ YATM +RELLK TS A L
Sbjct: 648 -------EANYMALLLEFSLPTAAYATMFLRELLKQDTSSASQTQL 686
>gi|380012150|ref|XP_003690150.1| PREDICTED: LOW QUALITY PROTEIN: pseudouridylate synthase 7 homolog
[Apis florea]
Length = 702
Score = 218 bits (556), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 145/445 (32%), Positives = 241/445 (54%), Gaps = 45/445 (10%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+W ++ GK+ F L+K N DT +AL ++ L + P +F +AGTKD+R+ +TQ V+V K
Sbjct: 169 DWKKK-GKYCYFLLHKVNMDTMDALNQLAMNLYLKPNNFTYAGTKDRRACTTQWVSVKKV 227
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
+ + K + G + +F + + L LG L GN F I LR V ++D I+ + SL
Sbjct: 228 TPTDILKAAKNVHGAYVXNFKFETKSLKLGMLNGNCFRIALRN-VNGTDDQIEKTMISLR 286
Query: 143 RNGFINYFGLQRFGS-GSVPTHLVGATLLRGEWKSAVKMILDPREGERNE-ISKAREYYK 200
+GFINY+GLQRFG+ ++PT+ +G LL+ +W A+++IL PREGE++E + +AR+ Y+
Sbjct: 287 DHGFINYYGLQRFGTVAAIPTYEIGKALLQSKWNQAIELILKPREGEQDEDLVEARKIYE 346
Query: 201 ETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQ-ALKAIPRTLRMMYVHSYQSFLWNH 259
T D +++ R E +L+ L C + Q AL +IPR R+MY+H+YQSF+WNH
Sbjct: 347 TTKDACSAYKRIKRCDKIEAILLKGLCICGNSNPQGALDSIPRNARLMYIHAYQSFVWNH 406
Query: 260 AASARVQKHGTEHVVVGDLVF---CKGDDTEKE---------LGCVNPEFEYESSNDADD 307
S R+++ G ++ +VGDLV+ K +D E++ + +N E + N+ D
Sbjct: 407 MVSRRIKEFG-KNPIVGDLVYENNVKENDNEEQFVYDNENEVITEINAEEFDQKINELDT 465
Query: 308 SSHL----DEVPETDHPDGRHNLVKTVTAADINS------------------GKYTIDDV 345
S+L +E +T ++ + AA+ S YT+ DV
Sbjct: 466 ESNLKVKIEEFTKTLEKSPNTSIKEITNAAECFSTYEIGNLPPVKVLEENDLSNYTLADV 525
Query: 346 VLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDF 405
++P G RVIYP + + KDG+ N K S+ G YR++ + P +
Sbjct: 526 LMPQVGWRVIYP-SYAKPWFDEFLAKDGLTTDLRQRNKK----YSLGGAYRKILEIPSNL 580
Query: 406 EWELLTYIDGNKPLAETDLDKIAKA 430
W+++ Y + + L D+D++ K+
Sbjct: 581 SWKIMHYTEKHSDLIMCDIDEMRKS 605
>gi|195127419|ref|XP_002008166.1| GI11971 [Drosophila mojavensis]
gi|193919775|gb|EDW18642.1| GI11971 [Drosophila mojavensis]
Length = 685
Score = 218 bits (556), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 167/524 (31%), Positives = 251/524 (47%), Gaps = 79/524 (15%)
Query: 17 DSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQR 76
DSR N+P F+ F ++K N DT E I+ L + P + GTKDKR+ +TQR
Sbjct: 207 DSRW--NFPHD---FVSFLVHKVNMDTSEVASTIANRLNLHPSQVNYCGTKDKRAKTTQR 261
Query: 77 VTVFKQRASKLAALNKRLIG-IRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIK 135
+ K+R + A R IG + +G+F + E L LG L GNRF I LR + E I+
Sbjct: 262 FCI-KRRTPEAIANAARGIGNVHIGNFSFRPETLKLGDLKGNRFRIALRHITHPREH-IE 319
Query: 136 ASANSLGRNGFINYFGLQRFG-SGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISK 194
+ SL GFINY+GLQRFG S SVPTH VG LL+ ++K A ++IL PR+ + +
Sbjct: 320 QALESLKERGFINYYGLQRFGNSASVPTHEVGVALLKRDYKLACELILKPRDNDVEFMRA 379
Query: 195 AREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGN-YLQALKAIPRTLRMMYVHSYQ 253
RE + E D K + E+ +L L N Y AL+ IPR + ++Y H+YQ
Sbjct: 380 IREAWWENRDSAAAAAKFHGNKFIEKKLLDGLATYGENDYAAALRRIPRNMLLLYPHAYQ 439
Query: 254 SFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDE 313
S ++N AS R+++ G + ++ GDLV+ + ++ ++ PE ES A+ +++
Sbjct: 440 SLIFNRIASRRIKEFGLK-LIPGDLVYVEEENDQQ---VKAPE---ESVPPAETDEIMED 492
Query: 314 V--PETDHPDGRHNL----VKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHH 367
V E D+P ++ V+ +T DI GKY + DVVLPLPG + YP N+ Y
Sbjct: 493 VLEGEGDNPLEEESIFKRKVRPLTDEDIAGGKYKLSDVVLPLPGYDITYPSNECGAWYDE 552
Query: 368 LAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKI 427
+ + G+ + H K + ++ G YR++ K D +W Y L +D +++
Sbjct: 553 MLAEVGLTSEQLRHKEKTY---ALGGAYRKLLIKTDDLKWSFRRYSTYEDTLIASDWEQL 609
Query: 428 AKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESV 487
K+I+++ E E
Sbjct: 610 ----------------------------------KNIEITPEPPE--------------- 620
Query: 488 CGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTL 531
S AL L TLP++ YATM +REL K TS A L
Sbjct: 621 ----SDNCYTALLLEFTLPTAVYATMLLRELFKQDTSTATQMQL 660
>gi|348687232|gb|EGZ27046.1| hypothetical protein PHYSODRAFT_474702 [Phytophthora sojae]
Length = 737
Score = 218 bits (554), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 162/493 (32%), Positives = 242/493 (49%), Gaps = 73/493 (14%)
Query: 17 DSRGSENWP---EQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVS 73
DSR +WP + +L+F LYK NK+T + ++ ML I P F +A KDKR ++
Sbjct: 262 DSR--RDWPVGQRKCADYLQFTLYKRNKETSAVINQLASMLKISPALFSYADVKDKRGIT 319
Query: 74 TQRVTVFKQRASKLAALNKRLIGIR--------LGDFCYVKEGLLLGQLLGNRFTITLRG 125
TQ TV++ + A + R G + +GD YV L LG GNR +
Sbjct: 320 TQLCTVYRVPKDR-AQVVFRPGGTKKLEDQQYLVGDLRYVSRKLELGDCAGNRIAMV--- 375
Query: 126 VVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPR 185
+ +S GFIN+FGLQRFG+ S HL+G +LR ++K AV ++L P+
Sbjct: 376 -----------AVHSWETRGFINFFGLQRFGNASTSYHLLGRAMLRKDYKLAVLLLLRPQ 424
Query: 186 EGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQ-ALKAIPRTL 244
+GE ++I ARE++++ D+ LR LP LV ERA+L+ L++ + + A IP+ L
Sbjct: 425 DGEASKIRAAREHFRKHKDVAAALRMLPPFLVPERAVLEGLQQHGIDAHELAYNNIPKPL 484
Query: 245 RMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSND 304
R+ +V +YQ F+WN AS RV K + VVGDLV P + + +
Sbjct: 485 RIAFVEAYQDFVWNEMASMRVAKFSSTAAVVGDLVL--------------PSRKRQRTGK 530
Query: 305 ADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEV 364
+ + EV E +T A ++ +Y+I+DVVLPLPG + YP N+V
Sbjct: 531 STRRKPIQEVME-------------LTEAIVD--QYSIEDVVLPLPGHAIKYPTNEVGAA 575
Query: 365 YHHLAEKDGINLTESLHNVKEFSIT-SMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETD 423
Y + DGI+L + H + S T + G+YR + +KP + L Y D KPL
Sbjct: 576 YRKMLTTDGIDL--NAHFGPDGSQTYQLDGSYRHLVKKPTRVSFRLKRYEDPTKPLIPN- 632
Query: 424 LDKIAKAKLV---NIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVK 480
DK + LV ++ +A +E MKQS S ++ T N+EAA K
Sbjct: 633 -DKGSHRALVLEFDLDYGSDATIATRE-----LMKQSS--SANVNWQTSNSEAASNDASK 684
Query: 481 QPHVESVCGADSQ 493
S A S+
Sbjct: 685 NADGSSSANAASR 697
>gi|198465909|ref|XP_001353815.2| GA19828 [Drosophila pseudoobscura pseudoobscura]
gi|198150366|gb|EAL29550.2| GA19828 [Drosophila pseudoobscura pseudoobscura]
Length = 721
Score = 218 bits (554), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 156/533 (29%), Positives = 246/533 (46%), Gaps = 75/533 (14%)
Query: 6 KKRKERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAG 65
K + RGDN + N+P G+F+ F ++K N DT E ++ L + P + G
Sbjct: 209 KPKHGRGDNRW------NFP---GEFVTFLVHKTNIDTSEVASTLASRLNLRPSQVNYCG 259
Query: 66 TKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRG 125
TKDKR+ +TQ ++ ++ + + + + G+F + L LG L GNRF I LR
Sbjct: 260 TKDKRAKTTQNFSIKRRSPESIINAARAIRNVFFGNFNFRSTTLKLGDLQGNRFRIALRH 319
Query: 126 VVVDSEDVIKASANSLGRNGFINYFGLQRFG-SGSVPTHLVGATLLRGEWKSAVKMILDP 184
+ + + I+ S SL GFINY+GLQRFG S SVPT+ VG LL+ ++K A ++IL P
Sbjct: 320 IAKERQADIEGSLESLKERGFINYYGLQRFGNSASVPTYEVGVALLKRDYKLACELILKP 379
Query: 185 REGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKC-PGNYLQALKAIPRT 243
R+ + + R+ + E D K E+ +L L + +Y AL+ IPR
Sbjct: 380 RDTDIEFMRAIRKEWWEKRDSAAAAAKFFGDKFIEKKLLDGLARFGETDYSSALRQIPRN 439
Query: 244 LRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSN 303
+ M+Y H+YQS ++N AS R+++ G + ++ GDLV+ + + +E + +
Sbjct: 440 MLMLYPHAYQSLIFNRIASRRIKEFGLK-LIPGDLVYVEQSEPMEEENQIEAAETEAAET 498
Query: 304 DADD-----SSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPM 358
D D +D E + R V+ ++ DI SGKY + DVVLPLPG + YP
Sbjct: 499 DEGDLPEGVEEDVDVALEEESVFKRK--VRPLSEEDIASGKYKLSDVVLPLPGHDITYPA 556
Query: 359 NDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKP 418
N+ Y + + G++ H K + ++ G YR++ +P D +W Y
Sbjct: 557 NECGAWYEEMMAEVGLSSELLKHKEKTY---ALGGAYRKMIIQPNDLKWSFRRYNTPEDT 613
Query: 419 LAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKE 478
L +D + L K I ++ E +E
Sbjct: 614 LIASDFE----------------------------------LMKGIPITAEPSE------ 633
Query: 479 VKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTL 531
K +AL L +LP++ YATM +REL K TS A L
Sbjct: 634 -------------DDAKYLALVLEFSLPTAAYATMLLRELFKQDTSTATQMQL 673
>gi|124504398|gb|AAI28809.1| Pus7 protein [Danio rerio]
Length = 340
Score = 218 bits (554), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 148/438 (33%), Positives = 200/438 (45%), Gaps = 106/438 (24%)
Query: 97 IRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFG 156
++LG+FCY K L LG+L GN FT+ LR + S+ + + NSL GFINY+G+QRFG
Sbjct: 2 LKLGNFCYKKHPLKLGELQGNHFTVVLRNIS-GSQQQVDQAMNSLQNTGFINYYGMQRFG 60
Query: 157 SGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKETDDIDGTLRKLPRH 215
+ +VPTH VG +L+ WK V +IL PR G E+ + K RE + T D LRKLP
Sbjct: 61 TTAVPTHRVGRAILQNNWKEVVDLILKPRPGAEKGYLVKCREEWARTQDPAAALRKLPVK 120
Query: 216 LVAERAILQCL-KKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVV 274
E +L+ L K N + A IPR R+MY+HSYQS++WN S RV +G V
Sbjct: 121 RCVEGQLLRGLAKHGKHNIITAFALIPRNNRLMYIHSYQSYVWNSMVSRRVDAYGLR-AV 179
Query: 275 VGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAAD 334
GDL+ G S+H V +AD
Sbjct: 180 EGDLILRGG------------------------SAH-------------------VLSAD 196
Query: 335 INSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGN 394
+ K++I DVV+PLPG VIYP + V + Y + D +++ H V+++ S+ G
Sbjct: 197 -EAQKHSIHDVVMPLPGFDVIYPTHSVGQGYREMLSADDLDIDNMRHKVRDY---SLAGA 252
Query: 395 YRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCM 454
YRRV +P D WEL+ Y D PL TDL+K+ E P+
Sbjct: 253 YRRVLIRPSDVSWELVQYDDPRVPLVHTDLEKL-------------------ENKPAPVY 293
Query: 455 KQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMA 514
TE A E P SS YATMA
Sbjct: 294 ------------LTEGKYCALKMEFSLP------------------------SSTYATMA 317
Query: 515 IRELLKTSTSVAFHKTLN 532
+RE+LK TS+ LN
Sbjct: 318 VREVLKMDTSIKNQTQLN 335
>gi|212571163|gb|ACJ35278.1| GA19828 [Drosophila pseudoobscura bogotana]
Length = 719
Score = 218 bits (554), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 156/529 (29%), Positives = 245/529 (46%), Gaps = 77/529 (14%)
Query: 11 RGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKR 70
RGDN + N+P G+F+ F ++K N DT E ++ L + P + GTKDKR
Sbjct: 214 RGDNRW------NFP---GEFVTFLVHKTNIDTSEVASTLASRLNLRPSQVNYCGTKDKR 264
Query: 71 SVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDS 130
+ +TQ ++ ++ + + + + G+F + L LG L GNRF I LR + +
Sbjct: 265 AKTTQNFSIKRRSPESIINAARAIRNVFFGNFNFRSTTLKLGDLQGNRFRIALRHIAKER 324
Query: 131 EDVIKASANSLGRNGFINYFGLQRFG-SGSVPTHLVGATLLRGEWKSAVKMILDPREGER 189
+ I+ S SL GFINY+GLQRFG S SVPT+ VG LL+ ++K A ++IL PR+ +
Sbjct: 325 QADIEGSLESLKERGFINYYGLQRFGNSASVPTYEVGVALLKRDYKLACELILKPRDTDI 384
Query: 190 NEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKC-PGNYLQALKAIPRTLRMMY 248
+ R+ + E D K E+ +L L + +Y AL+ IPR + M+Y
Sbjct: 385 EFMRAIRKEWWEKRDSAAAAAKFFGDKFIEKKLLDGLARFGETDYSSALRQIPRNMLMLY 444
Query: 249 VHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADD- 307
H+YQS ++N AS R+++ G + ++ GDLV+ + + +E + + D D
Sbjct: 445 PHAYQSLIFNRIASRRIKEFGLK-LIPGDLVYVEQSEPMEEENQIEAAETEAAETDEGDL 503
Query: 308 ----SSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAE 363
+D E + R V+ ++ DI SGKY + DVVLPLPG + YP N+
Sbjct: 504 PEGVEEDVDVALEEESVFKRK--VRPLSEEDIASGKYKLSDVVLPLPGHDITYPANECGA 561
Query: 364 VYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETD 423
Y + + G++ H K + ++ G YR++ +P D +W Y
Sbjct: 562 WYEEMMAEVGLSSELLKHKEKTY---ALGGAYRKMIIQPNDLKWSFRRY----------- 607
Query: 424 LDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSE-SLSKDIKLSTENNEAACAKEVKQP 482
P D + S+ L K I ++ E +E
Sbjct: 608 ------------------------NTPEDTLIASDFELMKGIPITAEPSE---------- 633
Query: 483 HVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTL 531
K +AL L +LP++ YATM +REL K TS A L
Sbjct: 634 ---------DDAKYLALVLEFSLPTAAYATMLLRELFKQDTSTATQMQL 673
>gi|385301234|gb|EIF45439.1| pseudouridine synthase [Dekkera bruxellensis AWRI1499]
Length = 424
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 157/489 (32%), Positives = 225/489 (46%), Gaps = 85/489 (17%)
Query: 45 EALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCY 104
E G++S++L I + +AGTKD+R V+ QR ++ + +LN L R+G F Y
Sbjct: 2 EVAGILSRILKIPVKYVRYAGTKDRRGVTVQRASLENVSIERANSLNNILRNCRIGCFEY 61
Query: 105 VKEGLLLGQLLGNRFTITLRGV-----VVDSEDVIKASANSLGRNGFINYFGLQRFGSGS 159
+ L L GN F IT+R E+ K +SL NGFINYFG+QRFG+ S
Sbjct: 62 SDTPINLAALSGNEFLITIRDAEPAXSSSTLEEAAKPILDSLRDNGFINYFGMQRFGTFS 121
Query: 160 VPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAE 219
V THLVG +L G WK+A ++IL +E +R + +T D +L+K+PR AE
Sbjct: 122 VSTHLVGKEILNGRWKNAAELILSEQEVVVPSSKDSRRIWAQTKDAALSLKKMPRKCSAE 181
Query: 220 RAILQCL---------KKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGT 270
+IL L + G+Y A+ IPR LR+MY H+YQS++WN S R++ G
Sbjct: 182 FSILSRLSHTKKEEDGEYSSGSYFNAIMGIPRNLRIMYGHAYQSYVWNCVTSXRIKLFGL 241
Query: 271 EHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTV 330
+ VV GD+V S D D + + + T+ V
Sbjct: 242 K-VVPGDVVLIT-----------------RSVEDDDGAEDVKQRHTTE--------THVV 275
Query: 331 TAADINSGKYTIDDVVLPLPGSRVIYPMN-DVAEVYHHLAEKDGINLTESLHNVKEFSIT 389
T DIN GKY I D+VLP PG V YP N D+ Y + +KDG++ V+EF
Sbjct: 276 TKEDINDGKYNIYDIVLPTPGYSVQYPENRDLKNAYIDIMKKDGLDPFNMSRRVREF--- 332
Query: 390 SMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKD 449
S+ G+YR + K + + Y L +TDL+ + K+ + E E+V +
Sbjct: 333 SLPGSYRHIVAKVSGLTYTIRRYNTFTDELVKTDLELLEMRKVAQLKGEXESVIPRINQG 392
Query: 450 PSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSC 509
D G + AL + LPSS
Sbjct: 393 FPD-----------------------------------------GAKEALIXKMQLPSST 411
Query: 510 YATMAIREL 518
YATMA+REL
Sbjct: 412 YATMALREL 420
>gi|258578463|ref|XP_002543413.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237903679|gb|EEP78080.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 701
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 164/530 (30%), Positives = 253/530 (47%), Gaps = 104/530 (19%)
Query: 7 KRKERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGT 66
K + +G + RG W E G++L F +YKENKDT E + +++ L + + FAGT
Sbjct: 246 KSQMKGGVADNRRGKLGWSEVGGEYLHFTVYKENKDTMEVMNFLARQLKLGIKGLKFAGT 305
Query: 67 KDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGV 126
KD+R V+ QR + F+ A +LA +N+ L +GDF Y K+GL LG L GN + G
Sbjct: 306 KDRRGVTVQRASAFRLDAGRLANMNRTLRNAAVGDFKYEKQGLELGDLGGNECYHSTSG- 364
Query: 127 VVDSEDVIKASANSLGRNGFINYFGLQRF-----GSGSVPTHLVGAT-LLRGEWKSAVKM 180
AN+ Y QR + HL+G +LR E
Sbjct: 365 ---------EHANAF-------YIAPQRVWMRRKAAARRRGHLMGPDDILRAE------- 401
Query: 181 ILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAI 240
A ++ T ++ L K+PR AE AI++ L + +YL AL+ I
Sbjct: 402 --------------AIHVFQSTGEVGPALAKMPRKFTAESAIIKHLGRKKNDYLGALQTI 447
Query: 241 PRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLV----FCKGDDTE----KELGC 292
PR LR++YVH+YQ+ +WNHAA R + +G + VV GDLV F + DD+ +E+
Sbjct: 448 PRNLRLIYVHAYQALVWNHAAGERWRLYG-DRVVEGDLVLIHEFKETDDSRAAMAEEVDA 506
Query: 293 VNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGS 352
++ND+ S+ D V E P +T+ + SGKYTI DVVLPLPG
Sbjct: 507 DGEAIVLPNTNDSAVSA--DSVFERARP---------LTSEEAGSGKYTIFDVVLPLPGY 555
Query: 353 RVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKP-MDFEWELLT 411
+IYP N + + Y + + +++ S++G YR++ +P D+ +E+
Sbjct: 556 DIIYPPNQLTDFYKTFMGSERGGKLDPFDMRRQWKDISLSGGYRKILSRPGADYSFEVKQ 615
Query: 412 YIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENN 471
Y D N+ +TDL++I +EK SD +S + + S ++
Sbjct: 616 YTDDNEQFIKTDLERI------------------REK-ASDAQGESNNQQQ----SVQDE 652
Query: 472 EAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKT 521
+ AKE K++A+ + L +S YATMA+REL+KT
Sbjct: 653 QMDAAKE----------------KKLAVVIKFQLGASQYATMALRELMKT 686
>gi|346327207|gb|EGX96803.1| pseudouridine synthase TruD/Pus7, putative [Cordyceps militaris
CM01]
Length = 704
Score = 215 bits (548), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 155/469 (33%), Positives = 234/469 (49%), Gaps = 70/469 (14%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
++L F LYK+N+DT +A+ I++M+ P++ G+AGTKD+R+ + QR ++ + LA
Sbjct: 216 AEYLHFTLYKDNRDTMDAVSQIARMIRSKPQAIGYAGTKDRRASTAQRCSIRHTQQRNLA 275
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRG--VVVDSEDVIKASANSL----- 141
LN L GI GD+ Y EG+ LGQLLGN F ITL+ VV +S + K+ A L
Sbjct: 276 GLNGNLWGIATGDYEYRDEGIHLGQLLGNEFVITLKNCHVVEESGETPKSVAEQLELLRS 335
Query: 142 ---------GRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL---------- 182
+G+INYFG QRFG+ + TH +G +L +++ AV+ +L
Sbjct: 336 NVGSALEHMATHGWINYFGHQRFGTHHIGTHDIGKLILGDKYEEAVEALLAYDPELAAEY 395
Query: 183 --------DPREGER--NEISKAREY----YKETDDIDGTLRKLPRHLVAERAILQCLKK 228
D ++G + N AR + ++ D +PR AE + + L +
Sbjct: 396 ETAAAAAADQQDGTKKTNLEELARHHACMLFRTGKDAKKAASMMPRRFSAEVCVTRHLTR 455
Query: 229 CPG----NYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGD 284
+++ AL I R LR MY+H+YQS +WNHAAS R ++HGT VV GDLV D
Sbjct: 456 AGASSMRDFVGALTHITRGLRSMYLHAYQSHVWNHAASMRWERHGTR-VVAGDLVIA--D 512
Query: 285 DTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDD 344
D + L + + N DD D P P +TA + SG+Y+I D
Sbjct: 513 DAAEPLFAGKDDDGDDIINPVDDD---DSAPVRARP---------LTAEEAASGRYSIYD 560
Query: 345 VVLPLPGSRVIYPMNDVAEVYHHL---AEKDGINLTESLHNVKEFSITSMTGNYRRV--- 398
VVLP PG +V YP NDV Y + ++ + + +EF S+ G YR++
Sbjct: 561 VVLPTPGYQVAYPDNDVGAFYTDFMGRPDNGSLDPRKMMRMRREF---SLPGRYRKLMNR 617
Query: 399 FQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKE 447
F P E+ TY D + + TDLD + +A K+ + G++E
Sbjct: 618 FLAPPSIEFR--TYTDDKEQMHPTDLDVLKEAAEEPAAKKTKMDEGSRE 664
>gi|297724239|ref|NP_001174483.1| Os05g0509300 [Oryza sativa Japonica Group]
gi|255676480|dbj|BAH93211.1| Os05g0509300 [Oryza sativa Japonica Group]
Length = 185
Score = 215 bits (547), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 111/189 (58%), Positives = 134/189 (70%), Gaps = 5/189 (2%)
Query: 196 REYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSF 255
RE+YKE DID LR PRHLVAE+AILQCLKKCPGNYLQALK+IPRTLRMMYVHSYQS+
Sbjct: 2 REHYKEHGDIDMALRNFPRHLVAEKAILQCLKKCPGNYLQALKSIPRTLRMMYVHSYQSY 61
Query: 256 LWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVP 315
LWNHAASARV+K+G V GDLV+ K E G E +D +SS +D
Sbjct: 62 LWNHAASARVEKYGISQAVEGDLVYSK----EPPPGEATSVDTSEPCDDQINSSDIDLCS 117
Query: 316 ETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGIN 375
ET P+ VK V + D+ G YT +DVVLPLPGS+ ++P N +A++YH LA+KDGI+
Sbjct: 118 ET-LPEETIQSVKIVDSEDLLKGVYTFEDVVLPLPGSQALFPGNGIADIYHELAKKDGIS 176
Query: 376 LTESLHNVK 384
LTE+ H VK
Sbjct: 177 LTENAHGVK 185
>gi|296421157|ref|XP_002840132.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636345|emb|CAZ84323.1| unnamed protein product [Tuber melanosporum]
Length = 686
Score = 214 bits (546), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 163/534 (30%), Positives = 253/534 (47%), Gaps = 108/534 (20%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILP--RSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
+ F +YK N+DT + +G++ ++G F FAG KDKR+V+ + +K RA +LA
Sbjct: 204 YCHFLVYKVNRDTMDVMGVLPHLVGGAGGRNPFSFAGNKDKRAVTVSWFSAYKIRAERLA 263
Query: 89 ALNKRLIGIR---LGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSE-----DVIKASANS 140
LN+ G+R LG+FCY GL LG L GN F ITLR V +V+ +
Sbjct: 264 QLNQGEGGLRGCHLGNFCYKDTGLGLGDLCGNEFVITLRECVSSDTSKGLGEVVGTAMQR 323
Query: 141 LGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL--DPREGERNEISKARE- 197
+ GF+NYFGLQRFGS V T VG +L+G W+ ++ IL DP E+++ S +RE
Sbjct: 324 VKETGFLNYFGLQRFGSHGVRTWEVGVEMLKGNWRGTIEKILSYDPAILEKDDGSVSREE 383
Query: 198 --------YYKETDDIDGTLRKLPRHLVAERAILQCLK-------KCPG--NYLQALKAI 240
+ T D + +PR AERAIL + + G +Y+ AL+A+
Sbjct: 384 KSRAQACHAFLTTYDFQKAVELIPRRSNAERAILTSFRDRGIEANEHGGRLDYMAALQAV 443
Query: 241 PRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYE 300
PR +R +Y+H++QSF+WN+ + R+ V+ GDLV + K +
Sbjct: 444 PRNMRTIYLHAFQSFVWNYVVTERISWGA--KVLPGDLVMAESTTAAKSKAP-----KPV 496
Query: 301 SSNDADDSSHLDEVPETDHPDG------------RHNLVKTVTAADINSGKYTIDDVVLP 348
++NDA + EV PD + + ++ + SGKY+I D+VLP
Sbjct: 497 ATNDASEIDQDGEVIIHAPPDHTGVTNTNPGEEEKFKRARALSKEEAESGKYSIKDIVLP 556
Query: 349 LPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFE-- 406
PG ++YP N + EVY + ++ ++ + KE TS+ G+YR V ++ E
Sbjct: 557 TPGWDIVYPQNALMEVYTRVMKEHTLDPLNMKRSHKE---TSLPGSYRHVIGTFINGEAN 613
Query: 407 WELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKL 466
+E+ Y G++ + +TDLD ++KE+EA+
Sbjct: 614 YEIRKY-HGDEQIVKTDLD---------VIKEKEAIAN---------------------- 641
Query: 467 STENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLK 520
GA + A+ L L +S YATMA+REL+K
Sbjct: 642 ----------------------GAAKGDGKTAVILRFQLGTSTYATMALRELMK 673
>gi|301123665|ref|XP_002909559.1| pseudouridylate synthase, putative [Phytophthora infestans T30-4]
gi|262100321|gb|EEY58373.1| pseudouridylate synthase, putative [Phytophthora infestans T30-4]
Length = 730
Score = 214 bits (545), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 141/421 (33%), Positives = 206/421 (48%), Gaps = 62/421 (14%)
Query: 17 DSRGSENWPEQLGK-----FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRS 71
DSR +WP K +L+ LYK NKDT + ++ +L I P F FA KDKR
Sbjct: 259 DSR--RDWPVGQRKCVGPDYLQLTLYKRNKDTSAVINQLASVLKISPALFSFADVKDKRG 316
Query: 72 VSTQRVTVFKQRASKLAALNKRLIGIR--------LGDFCYVKEGLLLGQLLGNRFTITL 123
++TQ TV++ + A + R G + +GD YV L LG GNR + +
Sbjct: 317 ITTQLCTVYRVPKDR-AQVAFRPGGTKKLEDQQYLVGDLRYVSRKLELGDCAGNRIAMVI 375
Query: 124 RGVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILD 183
R S R GFIN++GL RFG+ S HL+G +LR ++K AV ++L
Sbjct: 376 R---------------SWERRGFINFYGLHRFGNASTSYHLLGRAMLRKDYKLAVLLLLR 420
Query: 184 PREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQ-ALKAIPR 242
P+EGE ++I ARE++++ D+ LR LP LV ERA+L+ ++ + + A IP+
Sbjct: 421 PQEGEASKIRAAREHFRKHKDVAAALRMLPPFLVPERAVLEGHQQHGIDAHELAFNNIPK 480
Query: 243 TLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESS 302
LR+ Y+ +YQ+F+WN AS RV K + VVGDLV P + +
Sbjct: 481 PLRVSYIETYQNFVWNEMASMRVAKFSSTSAVVGDLVL--------------PARKRMRT 526
Query: 303 NDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVA 362
+ EV E + N+ +Y+I+DVVLPLPG V YP N+V
Sbjct: 527 GKTTRRQLMQEVMEL---------------TEANASQYSIEDVVLPLPGHAVKYPTNEVG 571
Query: 363 EVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAET 422
Y + DGI+L + + G+YR + +KP ++L Y D KPL
Sbjct: 572 AAYRKMLTTDGIDLNAHF-GPDGSQLYVLDGSYRHLVKKPTRVSFQLERYADPTKPLIPN 630
Query: 423 D 423
D
Sbjct: 631 D 631
>gi|195491175|ref|XP_002093449.1| GE20745 [Drosophila yakuba]
gi|194179550|gb|EDW93161.1| GE20745 [Drosophila yakuba]
Length = 725
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 154/526 (29%), Positives = 248/526 (47%), Gaps = 75/526 (14%)
Query: 15 PFDSRGSENW--PEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSV 72
P RG + W P +++ F ++K N T + + + L + P ++G KDKR+
Sbjct: 223 PKPGRGDKRWSFP---AEYVTFLVHKTNLVTSDVASIFAARLNLRPSQVNYSGIKDKRAK 279
Query: 73 STQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSED 132
+TQ+ ++ ++ + K +++G+F + L LG L GNRF I LR + + +
Sbjct: 280 TTQKFSIKRRTPESILGAAKCQRNVQIGNFAFESNTLKLGDLQGNRFRIALRHIAKEKRE 339
Query: 133 VIKASANSLGRNGFINYFGLQRFG-SGSVPTHLVGATLLRGEWKSAVKMILDPREGERNE 191
I+ + SL GFINY+GLQRFG S SVPT+ VG LL+ ++K A ++IL PR+ +
Sbjct: 340 EIEQALQSLKERGFINYYGLQRFGNSASVPTYEVGVALLKHDYKLACELILKPRDSDVEF 399
Query: 192 ISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKC-PGNYLQALKAIPRTLRMMYVH 250
+ RE + + D K+ E+ +L L + +Y AL+ IPR + M+Y H
Sbjct: 400 MRPIREEWWKNRDSAAAAAKIYGDKFIEKKLLDGLARFGESDYSSALRQIPRNMLMLYPH 459
Query: 251 SYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNP----EFEYESSNDAD 306
+YQS ++N AS R+++ G + ++ GDLV+ + D + G V E + E +ND
Sbjct: 460 AYQSLIFNRIASRRIKEFGLK-LIPGDLVYVEQD----QPGVVEEQALDEQKEEETNDEP 514
Query: 307 DSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYH 366
+ ++ + + V+ +TA DI SGKY + DVVLPLPG + YP N+ Y
Sbjct: 515 MEAVEEDEAIEEESVFKRK-VRPLTAEDIASGKYKLSDVVLPLPGHDITYPNNECGAWYE 573
Query: 367 HLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDK 426
+ + G++ + H K + ++ G YR++ D +W Y
Sbjct: 574 EMLAEVGLSSEQLKHKEKTY---ALAGAYRKMIISSSDLKWSFRMY-------------- 616
Query: 427 IAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSE-SLSKDIKLSTENNEAACAKEVKQPHVE 485
P D + S+ L K+I ++ E EA
Sbjct: 617 ---------------------NTPEDTLIASDWELLKNIPVTPEPAEA------------ 643
Query: 486 SVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTL 531
MAL L +LP++ YATM +RELLK TS A L
Sbjct: 644 -------DANYMALLLEFSLPTAAYATMFLRELLKQDTSSASQTQL 682
>gi|193584719|ref|XP_001952537.1| PREDICTED: pseudouridylate synthase 7 homolog [Acyrthosiphon pisum]
Length = 655
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 146/397 (36%), Positives = 216/397 (54%), Gaps = 22/397 (5%)
Query: 22 ENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFK 81
+ WP+ ++L F L+K N DT + ++SK L + + AGTKDKR +TQ ++V K
Sbjct: 179 QTWPKSRPEYLHFALHKCNMDTTNVVSILSKQLRVKVNTIKHAGTKDKRGNTTQMLSVRK 238
Query: 82 QRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSL 141
A+ +A LN R I G++ Y L LG L GNRF I LR + + E+V A L
Sbjct: 239 LNANNVAKLNIR--NIWTGNYIYKDSTLKLGDLKGNRFRIVLRNIKGNDEEVSNA-IEML 295
Query: 142 GRNGFINYFGLQRFGSGSV-PTHLVGATLLRGEWKSAVKMILDPREGE---RNEISKARE 197
+GFINY+GLQRFGS V PT++VG +L G + A++ IL PR E N+ +AR
Sbjct: 296 KIHGFINYYGLQRFGSSVVSPTYVVGKSLACGNCEEAIEHILKPRPLESAFENDTDRARS 355
Query: 198 YYKETDDIDGTLRKLP-RHLVAERAILQCLK-KCPGNYLQALKAIPRTLRMMYVHSYQSF 255
+ +T D L++L ++ E I++ L P Y+ A + IPR L ++Y+HSYQS
Sbjct: 356 VWWKTRDPKLALKQLSKKNYTVEAKIIRSLAFNGPKAYVNAFQIIPRNLVLLYLHSYQSL 415
Query: 256 LWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVP 315
+WN S R+QK G + +VGDLVF D+ KE+ + E ++ ++ +V
Sbjct: 416 MWNKIVSQRIQKFGLKP-IVGDLVF--KDNELKEVPVEVIDGEENKEDEEEEEEEEIDVN 472
Query: 316 ETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGIN 375
P+ V+T++ N KYTI DVV PLPG V YP N++ + Y L KDG+
Sbjct: 473 NVKFPE-----VETISEE--NLSKYTIFDVVYPLPGCDVCYPDNEIGKWYIDLLAKDGLT 525
Query: 376 LTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTY 412
+E L K+ + S+ G YR + K D W + +
Sbjct: 526 -SEKLS--KKNKLFSLKGTYRCIVSKAEDLVWATINH 559
>gi|219116915|ref|XP_002179252.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217409143|gb|EEC49075.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 656
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 149/470 (31%), Positives = 230/470 (48%), Gaps = 96/470 (20%)
Query: 3 RNSKKRKERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKML-------- 54
RN + R R P D ++L+F LYKEN DT A+G I + +
Sbjct: 188 RNQQNRMPREKAPSDK-----------QYLQFVLYKENMDTGAAVGQIQQFVQPPGGGRG 236
Query: 55 -----------GILPRSFGFAGTKDKRSVSTQRVTVFKQRA-SKLAALNKRLIG------ 96
G G+AG KDKR +++Q +TV + LA LN+ G
Sbjct: 237 RGRGGRGSFKHGGPKLRMGYAGMKDKRGITSQYITVPASTSLHALAGLNRPGQGGGHTRN 296
Query: 97 -----IRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSE-----DVIKASANSLGRNGF 146
IR+G+F YV L LG+L GNRF I LR + + SE ++++A +L NGF
Sbjct: 297 GGVGIIRVGNFEYVANELRLGRLKGNRFDIALRNIELGSETKNIGSSLESAAQALKDNGF 356
Query: 147 INYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYK------ 200
INYFG+QRFG THL G +L+G+++ A+ +I+ P+ ER I++AR +K
Sbjct: 357 INYFGVQRFGKYH-DTHLTGIAILKGDYEGAIDIIMSPKPDERPNIAEARAMWKDRFSHN 415
Query: 201 ------ETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQS 254
E + R+ R + +E AI+ L + P NY +A I +T+RMM++H+ QS
Sbjct: 416 SDRASAEKECAQKLSRQFNRFMHSEMAIVNSLARDPLNYEKAFSCINKTMRMMFIHAVQS 475
Query: 255 FLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEV 314
+LWNH S R++ G + V+ GDLV + + E +
Sbjct: 476 YLWNHVVSNRIETFGGK-VLEGDLVLADPNSIDGE-----------------------GI 511
Query: 315 PETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGI 374
PE + V+ DI++ KYT+ DVV+PL GS+ P N A+++ + G
Sbjct: 512 PE----------ILVVSGEDISANKYTLTDVVVPLIGSKTRDPANASADLFDTILLDKG- 560
Query: 375 NLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDL 424
LT + E + G+YR++ +P D ++++L Y D ++PL +TDL
Sbjct: 561 -LTREMMVKMEDRDFNSAGDYRKMICRPADVDFQVLEYTDPHQPLLQTDL 609
>gi|195326025|ref|XP_002029731.1| GM25058 [Drosophila sechellia]
gi|194118674|gb|EDW40717.1| GM25058 [Drosophila sechellia]
Length = 733
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 152/528 (28%), Positives = 249/528 (47%), Gaps = 74/528 (14%)
Query: 15 PFDSRGSENW--PEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSV 72
P RG + W P ++ F ++K N T + ++ L + P ++G KDKR+
Sbjct: 222 PKQGRGDKRWSFP---ADYVTFLVHKTNLVTSDVASTLAARLNLRPSQVNYSGIKDKRAK 278
Query: 73 STQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSED 132
+TQ+ +V ++ + + + +G+F + L LG L GNRF I LR + +
Sbjct: 279 TTQKFSVKRRTPESILVAARSQRNVNIGNFGFESNTLKLGDLQGNRFRIALRHIAKKKRE 338
Query: 133 VIKASANSLGRNGFINYFGLQRFG-SGSVPTHLVGATLLRGEWKSAVKMILDPREGERNE 191
I+ + SL GFINY+GLQRFG S SVPT+ VG LL+ ++K A ++IL PR+ +
Sbjct: 339 EIEQALQSLKGRGFINYYGLQRFGNSASVPTYEVGVALLKNDYKLACELILKPRDSDVEF 398
Query: 192 ISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKC-PGNYLQALKAIPRTLRMMYVH 250
+ RE + + D ++ E+ +L L + +Y AL+ IPR + M+Y H
Sbjct: 399 LRPIREEWWKNRDSAAAAAQIYGEKFIEKKLLDGLARFGESDYSSALRQIPRNMLMLYPH 458
Query: 251 SYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTE------KELGCVNPEFEYESSND 304
+YQS ++N AS R+++ G + ++ GDLV+ + + E ++ + E E +++
Sbjct: 459 AYQSLIFNRIASRRIKEFGLK-LIPGDLVYVEQEQPEAVEEQAQQCEALEEHKEEEPNDE 517
Query: 305 ADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEV 364
+ + DE E + R V+ +TA DI SGKY + DVVLPLPG + YP N+
Sbjct: 518 PLEVAEGDEAIEEESVFKRK--VRPLTAEDIASGKYKLSDVVLPLPGHDITYPSNECGAW 575
Query: 365 YHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDL 424
Y + + G++ + H K + ++ G YR++ D +W Y
Sbjct: 576 YEEMLAEVGLSSDQLKHKEKTY---ALAGAYRKMIISSSDLKWSFRMY------------ 620
Query: 425 DKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSE-SLSKDIKLSTENNEAACAKEVKQPH 483
P D + S+ L K+I ++ E
Sbjct: 621 -----------------------NSPEDTLIASDWELLKNIPVAPE-------------- 643
Query: 484 VESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTL 531
A+++ MAL L +LP++ YATM +RELLK TS A L
Sbjct: 644 -----PAEAEANYMALLLEFSLPTAAYATMFLRELLKQDTSSASQTQL 686
>gi|340722576|ref|XP_003399680.1| PREDICTED: pseudouridylate synthase 7 homolog [Bombus terrestris]
Length = 758
Score = 212 bits (539), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 154/469 (32%), Positives = 233/469 (49%), Gaps = 68/469 (14%)
Query: 15 PFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVST 74
P D R NW +Q G++ F L+K N DT A+ ++ L + P +F +AGTKD+R+ +T
Sbjct: 225 PRDKRV--NWKKQ-GEYCYFLLHKVNIDTMSAINQLAMNLYLRPNNFSYAGTKDRRAWTT 281
Query: 75 QRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVI 134
Q V+ K + + K L G +G+F + +E L LG L GN F I LR V E +
Sbjct: 282 QWVSARKVLPTDILRAAKNLPGTYVGNFKFERESLKLGMLNGNSFRIALRNVSGTDEQIE 341
Query: 135 KASANSLGRNGFINYFGLQRFGS-GSVPTHLVGATLLRGEWKSAVKMILDPREGERNE-I 192
KA SL +GFINY+GLQRFG+ ++PT+ +G LL+G+W A+ +IL PREGE++E +
Sbjct: 342 KAMI-SLRDHGFINYYGLQRFGTVVTIPTYEIGKALLQGKWNEAINLILKPREGEQDEDL 400
Query: 193 SKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQ-ALKAIPRTLRMMYVHS 251
+AR+ Y++T D ++ R E +L+ L N Q AL IPR R+MY+H+
Sbjct: 401 IEARKIYEKTKDASAACNRIRRCDKIEATLLKGLSISGINNPQGALDWIPRNARLMYIHA 460
Query: 252 YQSFLWNHAASARVQKHGTEHVVVGDLVF---CKGDDTEKE------------------- 289
YQSF+WNH S R+++ G + +VGDLV+ K +D E E
Sbjct: 461 YQSFVWNHMVSRRIKEFG-RNPIVGDLVYEKNVKHNDNEGEFVYDNGSELATEGNEEPIK 519
Query: 290 ------------LGCVNP-EFEYESSN------------------DADDSSHLDEVPETD 318
+ NP E E SN + S +E E+D
Sbjct: 520 KISKLESEMDVDVKIENPSEASEELSNTLVEEVTGAAECCLKIDENTQQSGTTNEKVESD 579
Query: 319 HPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTE 378
+VK + D+ Y++ D+++P G +V YP LA KDG+
Sbjct: 580 DSSDNLPMVKILEEEDL--PNYSLADILMPQVGWKVTYPPYAKPWFDEFLA-KDGLTADL 636
Query: 379 SLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKI 427
N K S+ G YRR+ Q P + W ++ Y + + L +D+D++
Sbjct: 637 RQKNKK----YSLGGAYRRILQIPSNLSWNIMHYSEKHSNLIMSDIDEM 681
Score = 42.4 bits (98), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 40/66 (60%)
Query: 459 SLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIREL 518
+LS +I +E + ++ + ++S D +G+ AL + ++L SS YATMA+RE+
Sbjct: 658 NLSWNIMHYSEKHSNLIMSDIDEMRMKSAPKNDPKGQYKALIIEMSLKSSTYATMALREI 717
Query: 519 LKTSTS 524
LK+ TS
Sbjct: 718 LKSDTS 723
>gi|452986075|gb|EME85831.1| hypothetical protein MYCFIDRAFT_214017 [Pseudocercospora fijiensis
CIRAD86]
Length = 770
Score = 211 bits (538), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 181/569 (31%), Positives = 270/569 (47%), Gaps = 117/569 (20%)
Query: 19 RGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVT 78
RG +NW + G++L F LYKENKDT E L ++ L + + FGFAGTKD+R V+ QRV+
Sbjct: 250 RGKQNWSDLGGEYLHFTLYKENKDTMEVLYFLASQLKMHMKHFGFAGTKDRRGVTVQRVS 309
Query: 79 VFKQRASKLAALNKRLIGIRLGD-FCYVKEGLLLGQLLGNRFTITLRGV----VVDSEDV 133
+ + R +L LNK G R+G + Y EGL LG GN F ITLR + +S +
Sbjct: 310 IHRVRRERLEQLNKHARGFRVGGPWEYRTEGLDLGMAKGNEFMITLRDARFEGITESASM 369
Query: 134 IKASANSLG----------RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL- 182
+ ++ G +GF+NY+GLQRFG+ S TH +G +L+G+ K A+ IL
Sbjct: 370 DQKLQHAQGIAKAAASNLAASGFLNYYGLQRFGTHSNGTHAIGMKMLQGDLKGAIDSILS 429
Query: 183 -DPREGERNE------------------ISKAR--EYYKETDDIDGTLRKLP-RHLVAER 220
DP E +E + +AR ++++ L LP AE+
Sbjct: 430 YDPTLLEEDESAQSNGDNAPRRMVPQEDVYRARAIHAFRKSGTSGEALSHLPGNRFSAEK 489
Query: 221 AILQCLKK---------CPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTE 271
++ L K +Y AL I R LR+MYVH+YQSF+WN A R ++ G +
Sbjct: 490 GLITHLGKRDRKTGRLPNENDYQGALMMIQRNLRLMYVHAYQSFVWNTVAGKRWERSG-D 548
Query: 272 HVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHN------ 325
VV GDLV EK+ G + + DD H + V + P + N
Sbjct: 549 KVVEGDLVVV----GEKDTGSDPSNSIKAPAQEVDD--HGEPVVHPNAPGDKGNDGGEAE 602
Query: 326 ----LVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYH-HLAEKDGINLTESL 380
+ ++ + SG++ I D+VLPLPG V+YP N+V + Y +A ++G L
Sbjct: 603 DPFVRARPLSKDEAESGRFDIFDLVLPLPGFDVVYPKNEVGKFYEDFMASEEGGKLDP-- 660
Query: 381 HNVKE-FSITSMTGNYRRVFQKPM-DFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKE 438
HN++ + S++G YR++F +P+ + E ++ Y + + ETDL
Sbjct: 661 HNMRRSWKDISLSGGYRKMFARPLGEVEVDVKAYSGLEEQMVETDL-------------- 706
Query: 439 EEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMA 498
E LSKD S EA K + + ++A
Sbjct: 707 -------------------ERLSKD---SESEAEARVEK-----------ASSGEKDKLA 733
Query: 499 LKLGLTLPSSCYATMAIRELLKTSTSVAF 527
+ L L L SS YATMA+REL K ++AF
Sbjct: 734 ILLKLKLGSSQYATMALRELSK-GGAIAF 761
>gi|325183061|emb|CCA17516.1| pseudouridylate synthase putative [Albugo laibachii Nc14]
Length = 757
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 145/487 (29%), Positives = 237/487 (48%), Gaps = 53/487 (10%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVF-- 80
+WP L +L+F LYK+NK+T + I+ L + +F +A TK+KR ++TQ T +
Sbjct: 280 DWPVHLPDYLQFVLYKQNKETVSVISQIAGQLHVPVSNFAYAETKEKRGITTQSCTAYRL 339
Query: 81 -KQRASKLAALNKRLIG---IRLGDFCYVKEGLLLGQLLGNRFTITLRGVV-VDSEDVIK 135
K+R +LA R + + + YV L G + GN+FTI +R + ++ ++
Sbjct: 340 RKERFQQLARSTYRPLHEHPFIVANLRYVASKLSKGSIWGNQFTIVIRSLSDANASLSME 399
Query: 136 ASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKA 195
R GFIN+FG +FGS +P +G +LR ++K A+ M+L +EGE +I +A
Sbjct: 400 ERVRQWNRAGFINFFGTNQFGSERLPYSSIGRAILRRDFKQAIMMLLKAQEGEATKIRQA 459
Query: 196 REYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQ-ALKAIPRTLRMMYVHSYQS 254
RE+Y++ D+ LR P LVAERA+L+ L K + A + +P+ LR MYV +YQS
Sbjct: 460 REHYRQHKDMSAALRMFPPFLVAERAVLEGLIKHGSEAHELAFQNVPQNLRAMYVEAYQS 519
Query: 255 FLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEV 314
++WN S RV ++ +VGDLV D ++ VN +DA
Sbjct: 520 YVWNQIVSKRV-ALSSDRAIVGDLVLQSVDRSDPNSTNVN--------SDA--------- 561
Query: 315 PETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGI 374
+ + ++ + N +YT+ +VVLP+PG V YP ND+ + L KDG+
Sbjct: 562 -----------ISQVISLTEENVSQYTLKNVVLPVPGFNVEYPNNDIGSEFKALLAKDGV 610
Query: 375 NLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVN 434
+ ++ G YR + P + +++ Y + + L TD+D + + V+
Sbjct: 611 YMDTWKPTADGKCSYNLDGFYRLAIETPRNAAHKVVKYANVTESLVSTDVDHLTQKVEVD 670
Query: 435 IVKEEEAVCGNKE------KDPSDC---------MKQS-ESLSKDIKLSTENNEAACAKE 478
++ KE P DC MKQ E LS K ++N+ +A
Sbjct: 671 HSMDQSTSEAEKEALILEFALPVDCDAIVALRELMKQKCEVLSSSGKECSKNSASAVKGT 730
Query: 479 VKQPHVE 485
K+ +E
Sbjct: 731 EKEAPIE 737
>gi|324509369|gb|ADY43944.1| Pseudouridine synthase [Ascaris suum]
Length = 551
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 140/409 (34%), Positives = 209/409 (51%), Gaps = 66/409 (16%)
Query: 17 DSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQR 76
D+R + WPE +L F + KENKD+ AL L++K LGI +FG GTKD+R V++QR
Sbjct: 136 DNRKRKIWPEGRPDYLHFTMSKENKDSHYALSLMAKFLGIKASNFGICGTKDRRGVTSQR 195
Query: 77 VTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDV-IK 135
V+V++ A ++ ALN RL GI+L F Y + LGQL GN+F I LR + D ED +
Sbjct: 196 VSVYRIDADRVRALNSRLRGIQLSHFEYCAKPCALGQLWGNQFRIILR-CINDCEDAELC 254
Query: 136 ASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKA 195
A NGFINYFG QRFGS V T VG T+++ +++ AV+ IL R + A
Sbjct: 255 ARVEDFKSNGFINYFGTQRFGSCGVATAEVGRTIIKKQYEEAVRTILKQRPA-LGCLRDA 313
Query: 196 REYYKETDDIDGTLRKLP---RHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSY 252
E + ++ D +++KL E +L L K GN+ AL +PR R +YVH+Y
Sbjct: 314 LEEWNKSGDAALSVKKLSGGQAFASIEAQLLSSLAKSKGNFSTALMMLPRNTRSLYVHAY 373
Query: 253 QSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLD 312
QS +WN AS RV++ G V+ GD+ D+ ++
Sbjct: 374 QSLIWNKIASRRVKEFGC-RVIEGDI-----DENGMKV---------------------- 405
Query: 313 EVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKD 372
E+D P + LPLP S++ P NDV + Y ++D
Sbjct: 406 ---ESDDPSA----------------------IALPLPSSKMRLPNNDVGKWYKEYMDED 440
Query: 373 GI--NLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPL 419
G+ ++ +SL N ++++ + R++ KP D E+E+L Y D + L
Sbjct: 441 GVTSDMFKSLEN--QYALGDV---LRQLIVKPKDVEYEILKYPDKDTRL 484
>gi|452825330|gb|EME32327.1| tRNA pseudouridine synthase D [Galdieria sulphuraria]
Length = 664
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 172/541 (31%), Positives = 257/541 (47%), Gaps = 103/541 (19%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
KFL F L K+N +T + ++ +L I F FAGTKDKR ++TQ + V +L
Sbjct: 173 NKFLSFLLCKKNTETSYVVSKLASLLHIRTGRFSFAGTKDKRGITTQEMRVRGVTMERLW 232
Query: 89 ALNKRLIG----IRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDV-------IKAS 137
+ +G IR+G F Y KE L LG+L GNRFT+ LR V+ D ED IK +
Sbjct: 233 QVGHSYLGKSSHIRIGRFKYCKEPLHLGELKGNRFTVILRNVL-DCEDTDSRQLENIKEA 291
Query: 138 ANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKARE 197
+ NGFINYFGLQRFGSG++P+H VG +LRG ++ ++IL P + E I A E
Sbjct: 292 IERVKMNGFINYFGLQRFGSGAIPSHHVGFEILRGNFEQVNRLILTPYDPEWRAI-HASE 350
Query: 198 YYKETDDI--------------------DGTLR------KLPRHLVAERAILQC-LKKCP 230
E+ + G L LPR + ER +L +K P
Sbjct: 351 ILGESISVKSHHGKKDRPQIMEYLHQFCQGQLNAGQVYSHLPRFMTIERQLLNTYMKNGP 410
Query: 231 GNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARV-QKHGTEHVVVGDLVFCKG--DDTE 287
++ A ++P+ L+ MYVH+ QS++WN ASAR+ ++ + + GDLV + D
Sbjct: 411 NDHKGAFSSLPKGLKKMYVHAVQSYIWNAMASARMDSQYDRQFAMAGDLVLDQTVQDSLR 470
Query: 288 KELG-CVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVV 346
E V+ E + ES D +D LD V ++ D +K V+ + KY I V
Sbjct: 471 TENNRSVSTEGDMESIADYED---LDVVESSEILDKN---IKIVSEEEALEKKYPITQVY 524
Query: 347 LPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNV-KEFSITSMTGNYRRVFQKPMDF 405
LPL G+++ +P N+ ++ L E+ I+ +SL + +EF G YR++ P
Sbjct: 525 LPLVGTQMKWPQNECGQIAMSLLEEHSIDF-QSLPTISQEF---QFRGGYRKLISIPKQV 580
Query: 406 EWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIK 465
E+ + Y + N+ L TD+++ KL S + D K
Sbjct: 581 EYHFMDYDEPNQSL--TDIEE----KLF-----------------------STQVPLDRK 611
Query: 466 LSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSV 525
+ ++N +C + K AL L TL SS YATM +RE+ K +S
Sbjct: 612 QTQDSN--SCKR-----------------KMTALVLQFTLASSEYATMFLREVTKQDSST 652
Query: 526 A 526
A
Sbjct: 653 A 653
>gi|195014237|ref|XP_001983986.1| GH15262 [Drosophila grimshawi]
gi|193897468|gb|EDV96334.1| GH15262 [Drosophila grimshawi]
Length = 711
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 154/521 (29%), Positives = 240/521 (46%), Gaps = 72/521 (13%)
Query: 15 PFDSRGSENW--PEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSV 72
P R W P FL ++K N DT E I+ L + + GTKDKR+
Sbjct: 204 PKPGRSDNRWSFPHDYATFL---VHKVNMDTSEVAATIANRLTLRASQVNYCGTKDKRAK 260
Query: 73 STQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSED 132
+TQR ++ ++ +A + + + +G+F + L LG L GNRF I LR + E
Sbjct: 261 TTQRFSIKRRTPEAIANAVRGMNNVYIGNFSFSPNTLKLGDLRGNRFRIALRHITEQREH 320
Query: 133 VIKASANSLGRNGFINYFGLQRFG-SGSVPTHLVGATLLRGEWKSAVKMILDPREGERNE 191
I+ + SL GFINY+GLQRFG S SVPT+ VG LL+ ++K A ++IL PR+ +
Sbjct: 321 -IELALQSLKERGFINYYGLQRFGNSASVPTYEVGVALLKRDYKLACELILKPRDNDVEF 379
Query: 192 ISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKC-PGNYLQALKAIPRTLRMMYVH 250
+ RE + + D K + E+ +L L +Y AL+ IPR + ++Y H
Sbjct: 380 MRAIREEWWKNRDSAAAAAKFYGNKFIEKKLLDGLATYGEKDYAAALRRIPRNMLLLYPH 439
Query: 251 SYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSH 310
+YQS ++N AS R+++ G + ++ GDLV+ + D ++ +P E + + D
Sbjct: 440 AYQSLIFNRIASRRIKEFGLK-LIPGDLVYVEDDISD------DPMPVEEIAEEELDVDD 492
Query: 311 LDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAE 370
+ V E + R V+ +TA DI S KY + DVV+PLPG + YP N+ A Y +
Sbjct: 493 DEHVLEEESIFKRK--VRPLTAEDIESNKYKLSDVVMPLPGYDITYPSNECAAWYEEMLA 550
Query: 371 KDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKA 430
+ G+ H K + ++ G YR++ + D W Y L +D +++
Sbjct: 551 EVGLTSELLRHKEKTY---ALGGAYRKLLIETSDLTWSFRRYRTPEDTLIASDWEQL--- 604
Query: 431 KLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGA 490
K+I+++ E E+
Sbjct: 605 -------------------------------KNIEITPEPAESES--------------- 618
Query: 491 DSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTL 531
G AL L TLP++ YATM +REL K TS A L
Sbjct: 619 ---GDYTALLLEFTLPTAVYATMFLRELFKQDTSTATQMQL 656
>gi|290993258|ref|XP_002679250.1| tRNA pseudouridine synthase family protein [Naegleria gruberi]
gi|284092866|gb|EFC46506.1| tRNA pseudouridine synthase family protein [Naegleria gruberi]
Length = 758
Score = 206 bits (524), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 157/489 (32%), Positives = 242/489 (49%), Gaps = 90/489 (18%)
Query: 3 RNSKKR--KERGDNP-----FDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLG 55
R++KK+ + +NP FD R WP++ +++F LYKEN +T E +G + ++L
Sbjct: 230 RDNKKKGGRREQNNPATQSYFDPRQFA-WPKERPNYIQFVLYKENSETTEIIGEMCRILK 288
Query: 56 ILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIG-IRLGDFCYVKEGLLLGQL 114
+ ++F AGTKDKR ++TQRVT ++ A KL +N++ +++G+F YV L LG L
Sbjct: 289 LKQKNFQIAGTKDKRGITTQRVTGYQISAEKLMQVNQKCHKMVKVGNFEYVDRPLKLGDL 348
Query: 115 LGNRFTITLRGVVV---------DSEDVIKASANSLGRNGFINYFGLQRFG--------- 156
GNRFT+ LR + + + ED+ + L + G+INYFG+QRFG
Sbjct: 349 SGNRFTLVLRDLKIPEGSPFSNRNVEDIFRERIEQLNKYGYINYFGMQRFGITYNSVKRE 408
Query: 157 -SGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDDIDGTLRK---- 211
PTHL+G LL+ WK+ K+IL I R+ + ID T K
Sbjct: 409 YHSDYPTHLLGQHLLKSNWKTLAKIILIAG------IQNVRDQRAKQTIIDFTEGKISAE 462
Query: 212 -----LPRH-LVAERAILQC-LKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASAR 264
LP+ E+ +L +K ++L A++A+P L MY+H+YQS ++NH S R
Sbjct: 463 QCYNSLPKFKFNTEKIMLNSYVKTSENDHLAAIQALPMNLLSMYIHAYQSLVYNHMVSLR 522
Query: 265 VQKHGTEHVVVGDLVFCKGDDTEKEL-GCVNPEFEYESSNDADDSSHLDEVPETDHPDGR 323
++K+G + VVVGD+V + EL C +P+ +ES P R
Sbjct: 523 IEKYGLK-VVVGDIVVSRS-----ELKSCEDPKLTFES------------------PITR 558
Query: 324 HNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVA--EVYHHLAEKDGINLTESLH 381
++T A KY I+DVV+ +PG + +P + E Y+ ++G +TE +
Sbjct: 559 ---IETEEQAQ----KYNIEDVVMSIPGYDIQFPSTEFVNKETYYKFMLENG-GITEEDY 610
Query: 382 NVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKE--E 439
K S G YR + +K D E+E Y L ETD D NI K+ E
Sbjct: 611 K-KHLSQYRTFGAYRFMIEKAKDIEFEFKDYNPETNKLVETDYDN-------NITKKPLE 662
Query: 440 EAVCGNKEK 448
+ C N +K
Sbjct: 663 QIPCENTKK 671
>gi|403371094|gb|EJY85424.1| Pseudouridine synthase [Oxytricha trifallax]
Length = 698
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 152/534 (28%), Positives = 247/534 (46%), Gaps = 98/534 (18%)
Query: 22 ENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFK 81
ENWP+ +L+ + K N DT +A+ I+K L + F G KDKR ++TQR+T+ +
Sbjct: 233 ENWPQ----YLQVVVQKTNVDTMQAVHYIAKKLKKYGKCFQVCGNKDKRGITTQRMTILR 288
Query: 82 QRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVD-SEDVIKASANS 140
K+ ++G F V + L LGQL GNRF++ LR + + + I + +
Sbjct: 289 DWDKKM----------KVGTFSRVDKPLRLGQLSGNRFSVALRFIPASVTNEQIAQNVEN 338
Query: 141 LGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL----DPREGERNEISKAR 196
L GF+NYFG+QRFG+ ++ TH +G L+ W+ V+MIL D + K
Sbjct: 339 LRLKGFLNYFGMQRFGTYNIRTHQIGIENLKQNWQKVVEMILSQHPDGDYFSQQRKQKMV 398
Query: 197 EYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFL 256
+Y E +IDG + L R E+++L LK+ P Y A + + R R +++H+YQS+L
Sbjct: 399 KYVIEDKNIDGAMNLLDRRDRLEKSLLMILKRNPNGYYNAFQNLARNTRTIFIHAYQSYL 458
Query: 257 WNHAASARVQKHGTEHVVVGDLVFCKGDDTEKE--LGCVNPEFEYESSNDADDSSHLDEV 314
WN S R+++ G+E V++GDLV D EK + + E + + DD ++
Sbjct: 459 WNQTLSERIRRFGSE-VLIGDLVI----DPEKSKLVEEADNAEELPADENIDDDEEPYDL 513
Query: 315 P--------ETDHPD--------GRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPM 358
P E+ P L+ VT +I+ KY I+DVVLP+ G + +P
Sbjct: 514 PVFDKLNKEESKQPKKPKLHGSAALEELLIEVTEENIH--KYRIEDVVLPMIGYKTQFPT 571
Query: 359 N-DVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNK 417
N D+ ++ + + KD I L + S G+YR++ D E++++ + + N+
Sbjct: 572 NKDLLQIMYDIMSKDNITL-DHFERQATLDTQSAYGSYRKIIGFATDLEYDVVEFQNINE 630
Query: 418 PLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAK 477
L + N EKDP + T N E
Sbjct: 631 DLLTPN--------------------HNIEKDP---------------IPTINREDQ--- 652
Query: 478 EVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTL 531
+Q A+++ + L SCYATM IRE+ K S++ +
Sbjct: 653 --------------TQPIHRAIRIKMNLKQSCYATMMIREVAKMSSAFNVQNAM 692
>gi|123472517|ref|XP_001319452.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121902235|gb|EAY07229.1| hypothetical protein TVAG_050450 [Trichomonas vaginalis G3]
Length = 530
Score = 205 bits (522), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 130/398 (32%), Positives = 201/398 (50%), Gaps = 64/398 (16%)
Query: 38 KENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGI 97
KEN + QE++ +SK L I G AG KDKR+++TQ +T+ + L L I
Sbjct: 123 KENTNQQESISKLSKKLNIKKNQIGIAGNKDKRAITTQVMTIRDVGINSLEQLANLTDKI 182
Query: 98 RLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVI-------KASANSLGRNGFINYF 150
+ G F + LG L GN FT+ LR + + + + K +L GFINYF
Sbjct: 183 KCGMFYQAMNPVNLGDLNGNHFTLVLRNLTIPGCETVEELREGLKIRMEALSEKGFINYF 242
Query: 151 GLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDDIDGTLR 210
G+QRFG+ ++ TH +G +LR EW+ + MI+ P EG + +++KA+ Y +T D +
Sbjct: 243 GMQRFGTTAMSTHTIGIAILRKEWQKVIDMIMSPIEGNQEDVNKAKTIYMKTHDAEKAYA 302
Query: 211 KLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGT 270
+P+H E++IL KK N + K I R R++Y H+YQS++WNH ASARV++ G
Sbjct: 303 LMPKHAATEKSILAAAKKGIKNPFELFKVIDRRQRLLYCHAYQSYVWNHCASARVKRSGF 362
Query: 271 EHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTV 330
+ VV GD+V + N V TV
Sbjct: 363 K-VVPGDIV-----------------------------------------EENRNYV-TV 379
Query: 331 TAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNV-KEFSIT 389
A N KY+ D+V+PLP I P D E L +KDGI +S+ + KE
Sbjct: 380 KAG--NESKYSPFDIVIPLPADGCISP--DAEE----LLKKDGIE--QSMFSAQKEL--- 426
Query: 390 SMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKI 427
+ G+YR++F +P D ++++ + D + L ++D+DK+
Sbjct: 427 GLVGDYRKLFAQPTDISFDIIEHDDNDAELIDSDIDKL 464
>gi|449019993|dbj|BAM83395.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain
10D]
Length = 738
Score = 205 bits (521), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 162/557 (29%), Positives = 249/557 (44%), Gaps = 114/557 (20%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G +LRF L K+N DT E + +++ LG+ P +F +AGTKD+R V+TQ + +++ ++L
Sbjct: 198 GSYLRFLLCKQNLDTNEVVMRLARSLGLKPNAFTYAGTKDRRGVTTQEMRIWQCTPARLE 257
Query: 89 ALNKRLIG----------IRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASA 138
+R G IR+G F KE L LGQL GN F + LR + ++ + + ++
Sbjct: 258 KAVERAFGQVDADSGAPQIRVGGFRCTKEPLRLGQLQGNYFRLVLRSLAPNALEEVDSAI 317
Query: 139 NSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGE-RNEISKAR- 196
SL +GFINY+GLQRFGSG VPTH +G LLRG+W+ A+ +IL E R+E R
Sbjct: 318 VSLREHGFINYYGLQRFGSGRVPTHHIGLALLRGKWREALDLILTASLVETRDEQQSLRV 377
Query: 197 --------EYYKETD------DIDGTLRKLPRHLVAERAILQCLKKCPGNYLQAL-KAIP 241
Y +E D + R + R L E+ +LQ + L A+ ++P
Sbjct: 378 GYVRPILEAYLRERDAARALTQLAALPRAVQRGLHLEKRLLQAECQYGARDLPAIFHSLP 437
Query: 242 RTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVF---CKGDDTEKELG------- 291
R LR +Y+H+ QS++WN AS R++ G + + GDLV G + +
Sbjct: 438 RNLRTLYLHAVQSYVWNEMASERIRAFGAKELHPGDLVLEPVPAGAPSAHTIADADTIVD 497
Query: 292 ---------------------CVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNL-VKT 329
+PE S AD++ + G + V
Sbjct: 498 DDHDHDGDVDDDAPSAPATDTVTDPESAAPSLTHADNAGTASKATVDATTSGFAPVSVHP 557
Query: 330 VTAADINSGKYTIDDVVLPLPGSRV-IYPMNDVAEVYHHLAEKDGINL--TESLHNVKEF 386
VT ADI+S +YTI D+V+P+PG + A Y E G++L T++ K++
Sbjct: 558 VTQADIDSQRYTIFDLVVPVPGLQTEAISCPAAARAYRRFVETYGVSLMGTDAPALCKQY 617
Query: 387 SITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNK 446
+M G YRRV +P + + + +PL +TDL G
Sbjct: 618 ---TMRGTYRRVLVRPERLTYRFVRHESPREPLLDTDLS------------------GLP 656
Query: 447 EKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLP 506
+D M +V A + + ++ L LP
Sbjct: 657 ARDAQSIM-------------------------------NVNDAPVESRFLSCVLCFQLP 685
Query: 507 SSCYATMAIRELLKTST 523
+S YATM +REL K T
Sbjct: 686 ASSYATMLLRELTKNQT 702
>gi|346975910|gb|EGY19362.1| tRNA pseudouridine synthase D [Verticillium dahliae VdLs.17]
Length = 813
Score = 204 bits (520), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 149/466 (31%), Positives = 222/466 (47%), Gaps = 49/466 (10%)
Query: 4 NSKKRKERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGF 63
N R + G+N ++G E G++L F LYKEN+DT +A+ +++ P+ F F
Sbjct: 229 NQANRMKTGNNRRSAKGKVK-AEGEGEYLHFTLYKENRDTMDAIHQLARAGRAKPQHFAF 287
Query: 64 AGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITL 123
AGTKD+R+ + QR +V +A L + R+ G+ GD+ Y + L LG L GN F ITL
Sbjct: 288 AGTKDRRAATAQRCSVRWLKAENLHGVQARVHGLVTGDYRYERHPLHLGGLQGNEFVITL 347
Query: 124 R---------------GVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGAT 168
+ + + S+ G++NYFG QRFG+ +V TH VG
Sbjct: 348 KKCRLADPASEALPPAAREAAIRRAAETALESMASRGWLNYFGHQRFGTYAVGTHDVGRL 407
Query: 169 LLRGEWKSAVKMIL--------------DPREGERNEISKARE---YYKETDD---IDGT 208
+L+ ++ AV IL P G + S R +T D D
Sbjct: 408 ILQEDFAGAVDAILAYRPEVAQRAVRRRGPGRGAPSATSSTRHRVCMLFQTGDGAAADDA 467
Query: 209 LRKLPRHLVAERAILQCLKKCPG---NYLQALKAIPRTLRMMYVHSYQSFLWNHAASARV 265
L LPR AE A+++ L + P ++ AL AIPR LR MY+H+YQS++WNHAAS R
Sbjct: 468 LHYLPRRFTAEGAVMRHLGRNPASRRDFHGALNAIPRQLRNMYLHAYQSYVWNHAASRRW 527
Query: 266 QKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHN 325
HG + VV GDLV + + +PE D +S+ D
Sbjct: 528 ALHG-DAVVEGDLVVVDA-APKPDTSVTDPELARAQQPDGQTTSN-SPNDNDDDEPDEPT 584
Query: 326 LVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHL---AEKDGINLTESLHN 382
+ +TA + SG++TI DVVLP PG V+YP N + Y E G++
Sbjct: 585 AARALTAEEAASGRHTIHDVVLPSPGHAVLYPPNALGAFYASFMARPENGGLDPHSMARR 644
Query: 383 VKEFSITSMTGNYRRVFQKPMDFEW-ELLTYIDGNKPLAETDLDKI 427
++F S+ G YRR+ + + E+ Y D + + TDLD++
Sbjct: 645 HRDF---SLPGTYRRLTARFLGAPAVEVRRYRDEEEQMHPTDLDRV 687
>gi|260810549|ref|XP_002600024.1| hypothetical protein BRAFLDRAFT_79734 [Branchiostoma floridae]
gi|229285309|gb|EEN56036.1| hypothetical protein BRAFLDRAFT_79734 [Branchiostoma floridae]
Length = 603
Score = 204 bits (519), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 135/371 (36%), Positives = 183/371 (49%), Gaps = 70/371 (18%)
Query: 19 RGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVT 78
R WP+ + F LYKEN DT +A+ +++ L I
Sbjct: 226 RNKFKWPKCRPDYCHFVLYKENLDTMDAINMLAMNLRIA--------------------- 264
Query: 79 VFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASA 138
A +L LNK LG+F Y ++ L LG L GN FTI LR S + I+A
Sbjct: 265 -----AERLCDLNKHTSRYVLGNFRYTEQPLKLGLLSGNHFTIVLRNCT-GSPEQIEAGM 318
Query: 139 NSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNE--ISKAR 196
SL NGFINYFG+QRFG+ SVP+H VG LL +W+ A+++IL PREGE E +S R
Sbjct: 319 TSLRDNGFINYFGMQRFGTTSVPSHHVGRALLHSKWEEAIELILKPREGEHQEGAVSACR 378
Query: 197 EYYKETDDIDGTLRKLPRHLVA---ERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQ 253
+++ +T D G L +PR ++ E +L+ L K + + AL IPR R+MYVHSYQ
Sbjct: 379 DFWWKTRDAKGALEMMPRRNMSKDIEGRLLEGLVKNGKDLVGALSNIPRNTRLMYVHSYQ 438
Query: 254 SFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDE 313
SF+WN+ S R+Q++G + +VGDLV EKE G E
Sbjct: 439 SFIWNNIVSRRLQEYGYQ-PIVGDLVL-----EEKEDGAQRSE----------------- 475
Query: 314 VPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDG 373
K +T D+ G YTI DVV PL G VIYP + E Y + D
Sbjct: 476 -------------AKVLTEEDM--GNYTIHDVVFPLFGYDVIYPKHKAEEWYREMLSVDQ 520
Query: 374 INLTESLHNVK 384
+++ H VK
Sbjct: 521 LDMDNIRHKVK 531
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 29/43 (67%)
Query: 490 ADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
A S+GK ALK+ TLP S YATMA+RE+LKT TS LN
Sbjct: 559 ASSEGKMKALKVEFTLPPSTYATMALREILKTDTSSGHQALLN 601
>gi|327273105|ref|XP_003221323.1| PREDICTED: pseudouridylate synthase 7 homolog-like protein-like
[Anolis carolinensis]
Length = 698
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 131/393 (33%), Positives = 200/393 (50%), Gaps = 51/393 (12%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
+ F L KEN +T EA+ +S LG+LP F + G KDK++V+ Q + V K +L L
Sbjct: 299 YTAFTLQKENLETLEAISYLSSELGVLPSDFSYTGIKDKKAVTYQAMVVKKVTPKRLKEL 358
Query: 91 NKRLIGIRLG--DFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDV-------IKASANSL 141
+ G RLG + V + L LGQL GN F I +R + + S D + + +
Sbjct: 359 GIIIGGKRLGLSNIHSVNQSLRLGQLQGNHFAIIVRDLKLHSNDCHGNLKERVYEAMEKV 418
Query: 142 GRNGFINYFGLQRFGSG-SVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYK 200
+NGFINY+G QRFG G ++ T +G LL E AVK+ P + + + ++KA++Y+
Sbjct: 419 KKNGFINYYGPQRFGQGQNIHTDQIGLALLNEEMVKAVKLFFTPEDSD-DPVNKAKKYFL 477
Query: 201 ETDDIDGTLRKLPRHLVAERAILQCLKKCPGNY---LQALKAIPRTLRMMYVHSYQSFLW 257
ET+D GTL LP V ER +L+ L + N+ +Q +IP ++R+ YVH+Y S +W
Sbjct: 478 ETEDAKGTLAMLPDFKVRERMLLRALNRYGLNHEGCIQGWLSIPHSMRIFYVHAYCSKIW 537
Query: 258 NHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPET 317
N A S R++ +GT VV GDLVF D+ ES + +D
Sbjct: 538 NEAVSYRIKTYGTS-VVTGDLVFSIEDN--------------ESCSPSDK---------- 572
Query: 318 DHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLT 377
V +T+ + + KYTI+ V++P+ G V YP N V E YH +DG+ +
Sbjct: 573 ---------VHVITSEEEMANKYTINQVIIPMAGYSVQYPTNKVGEWYHERLARDGLQMG 623
Query: 378 ESLHNVKEFSITSMTGNYRRVFQKPMDFEWELL 410
+ ++ G YR + + P D + L
Sbjct: 624 HFRLPALQLNV---PGCYRHILKYPHDLSYSFL 653
>gi|41388921|gb|AAH65861.1| Pus7 protein [Danio rerio]
Length = 326
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 141/424 (33%), Positives = 190/424 (44%), Gaps = 106/424 (25%)
Query: 111 LGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLL 170
LG+L GN FT+ LR + S+ + + NSL GFINY+G+QRFG+ +VPTH VG +L
Sbjct: 2 LGELQGNHFTVVLRNIS-GSQQQVDQAMNSLQNTGFINYYGMQRFGTTAVPTHRVGRAIL 60
Query: 171 RGEWKSAVKMILDPREG-ERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCL-KK 228
+ WK V +IL PR G E+ + K RE + T D LRKLP E +L+ L K
Sbjct: 61 QNNWKEVVDLILKPRPGAEKGYLVKCREEWARTQDPAAALRKLPVKRCVEGQLLRGLAKH 120
Query: 229 CPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEK 288
N + A IPR R+MY+HSYQS++WN S RV +G V GDL+ G
Sbjct: 121 GKHNIITAFALIPRNNRLMYIHSYQSYVWNSMVSRRVDAYGLR-AVEGDLILRGG----- 174
Query: 289 ELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLP 348
S+H V +AD + K++I DVV+P
Sbjct: 175 -------------------SAH-------------------VLSAD-EAQKHSIHDVVMP 195
Query: 349 LPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWE 408
LPG VIYP + V + Y + D +++ H V+++ S+ G YRRV +P D WE
Sbjct: 196 LPGFDVIYPTHSVGQGYREMLSADDLDIDNMRHKVRDY---SLAGAYRRVLIRPSDVSWE 252
Query: 409 LLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLST 468
L+ Y D PL TDL+K+ E P+ T
Sbjct: 253 LVQYDDPRVPLVHTDLEKL-------------------ENKPAPV------------YLT 281
Query: 469 ENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFH 528
E A E P SS YATMA+RE+LK TS+
Sbjct: 282 EGKYCALKMEFSLP------------------------SSTYATMAVREVLKMDTSIKNQ 317
Query: 529 KTLN 532
LN
Sbjct: 318 TQLN 321
>gi|189208654|ref|XP_001940660.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187976753|gb|EDU43379.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 732
Score = 201 bits (512), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 159/521 (30%), Positives = 233/521 (44%), Gaps = 74/521 (14%)
Query: 19 RGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVT 78
RG +W E G++L F+LYKENKDT E +G + L + FGFAGTKD+R+ + QRV
Sbjct: 266 RGGLDWEELGGEYLHFNLYKENKDTMEVVGFLGSKLNCGTKGFGFAGTKDRRACTVQRVC 325
Query: 79 VFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASA 138
V +Q A ++ NK L +G+F Y L LG L+GN FTITLR E
Sbjct: 326 VKRQTAQRMQNFNKMLFNACVGNFEYRHHDLKLGDLMGNEFTITLRDCHFQGEQ------ 379
Query: 139 NSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREY 198
GL + +++G + K + + +RN +KA
Sbjct: 380 ------------GLTFEERLKLADNVIGKAITDFSQKVS--------QDDRNR-AKALHI 418
Query: 199 YKETDDIDGTLRKLPRHLVAERAILQCLKKC---------PGNYLQALKAIPRTLRMMYV 249
+K L LPR AER I+Q L ++ AL IPRTLR+MYV
Sbjct: 419 WKTKGSGSEALDFLPRKFTAERNIIQHLSSRNSKSGRYDRKADWQGALMTIPRTLRLMYV 478
Query: 250 HSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELG-CVNPEFEYESSNDADDS 308
H+YQS +WN A R +G + VV GDLV + +KEL + + D +
Sbjct: 479 HAYQSLVWNTVAGKRWTMYG-DRVVEGDLVLVN-EHRDKELSNTATAKVDTTIDQDGEMI 536
Query: 309 SHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHL 368
+ + P+ + +TAA+ SG+YTI D+VLP PG + YP N++ Y
Sbjct: 537 INPSGTENANAPEADFERARPLTAAEAASGQYTIWDIVLPQPGFDIEYPQNEIGTFYKKF 596
Query: 369 AEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMD-FEWELLTYIDGNKPLAETDLDKI 427
+ + +++ S++G YR+ KP+ + L Y ++ ETDL ++
Sbjct: 597 MGSEKGGGLDPYKMRRQWREVSLSGGYRKFLAKPLGPLTYALHDYTKPDEQFVETDLQRL 656
Query: 428 AKAKLVNIVK-EEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVES 486
K + V+ K EE A + + D D ++ E K I
Sbjct: 657 GKERDVSGRKGEEGAAVEDGDGDMEDGKEKDEEQEKKI---------------------- 694
Query: 487 VCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAF 527
A+ L L L SS YATMA+REL+K A+
Sbjct: 695 -----------AVVLKLQLASSQYATMALRELMKAGGVKAY 724
>gi|440797444|gb|ELR18530.1| RNA binding, putative, partial [Acanthamoeba castellanii str. Neff]
Length = 262
Score = 198 bits (503), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 95/184 (51%), Positives = 123/184 (66%), Gaps = 1/184 (0%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
WP G +L+F LYKENKDT A+GL++K F +AGTKDKR V+TQ +T++
Sbjct: 80 QWPTCWGDYLQFVLYKENKDTTAAVGLLAKFTNARASRFSYAGTKDKRGVTTQHMTIYHM 139
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
RA +L LN +L G+R+G+F YV + L LG L GNRF++ LR V SE+ I S L
Sbjct: 140 RAEQLRGLNAKLYGMRVGNFSYVSQQLRLGDLFGNRFSVVLREVSA-SEEEINHSLTELK 198
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKET 202
R GF+NY+GLQRFG+GSV TH VG LL+G+WK A +IL PR GE E AR+Y+ ET
Sbjct: 199 RTGFVNYYGLQRFGTGSVATHRVGIALLQGQWKEAADLILQPRTGEEQECESARKYWAET 258
Query: 203 DDID 206
DI+
Sbjct: 259 GDIN 262
>gi|428172363|gb|EKX41273.1| hypothetical protein GUITHDRAFT_112737 [Guillardia theta CCMP2712]
Length = 751
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 138/433 (31%), Positives = 225/433 (51%), Gaps = 43/433 (9%)
Query: 5 SKKRKERGDNP--FDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFG 62
+KK + RG P F W + F L KE+ + EA+ ++ L + P F
Sbjct: 312 NKKNERRGTRPQKFKIEDGGYW------YTAFVLRKEHVEHLEAISRLADALQVPPSYFS 365
Query: 63 FAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCY--VKEGLLLGQLLGNRFT 120
+ GTKDK ++TQ V + +LA ++ ++ IR+G + L LG LLGNRF
Sbjct: 366 YHGTKDKVGITTQLFAVRGVKGERLAGISNKISRIRIGKISTSSYAQPLSLGHLLGNRFQ 425
Query: 121 ITLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGS---VPTHLVGATLLRGEWKSA 177
I +R + E V++ + LGR+GF NYFG QR G S + H VGA+++RG++++A
Sbjct: 426 IRIREISAKRE-VVEGAVGELGRSGFFNYFGSQRVGRYSADHLMPHRVGASMMRGDFETA 484
Query: 178 VKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGN-YLQA 236
+K +L + + + +A ++Y ET +I L+ LPR + +L+ L++ +L+A
Sbjct: 485 LKTLLYGQGDNKEKCRQAIDFYYETKNISKALKMLPRGSRVQEIVLKALQRNGHEAHLEA 544
Query: 237 LKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFC--KGDDTEKELGCVN 294
+KA+P +R +++ SYQSF++N S R++K G + V GDLV+ + D ++ L
Sbjct: 545 IKALPHGIRSLHLQSYQSFVFNCMVSLRMRKFGRQ-AVEGDLVWSSERMADRKRRL---- 599
Query: 295 PEFEYESSNDADDSSHLDE-------------VPETDHPDG----RHNLVKTVTAADINS 337
E E ++ + LD V +H +G + +KT+T DI S
Sbjct: 600 -ELLSECADGSGKRRKLDGGSFVGQEEDEDGVVESKNHAEGTDTAENKRIKTLTKEDIAS 658
Query: 338 GKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRR 397
G Y I DV+LPLPG VIYP N++ E Y L +D ++ + + F+ + G YR+
Sbjct: 659 GSYGIQDVILPLPGRSVIYPDNEMKEEYRKLLAQDDVDFQDPTAKLGPFA-SQCPGGYRQ 717
Query: 398 VFQKPMDFEWELL 410
V + W+LL
Sbjct: 718 VVEYIKS--WDLL 728
>gi|164660432|ref|XP_001731339.1| hypothetical protein MGL_1522 [Malassezia globosa CBS 7966]
gi|159105239|gb|EDP44125.1| hypothetical protein MGL_1522 [Malassezia globosa CBS 7966]
Length = 736
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 164/590 (27%), Positives = 235/590 (39%), Gaps = 180/590 (30%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRS-------FGFAGTKDKRSVSTQRVTV---- 79
++ F L K N+D+QEAL +++ L + R AGTKDKR+V+ QRV +
Sbjct: 231 YIHFTLQKTNRDSQEALQWLARFLKLDHRGRSSSANMLSVAGTKDKRAVTVQRVALQRGR 290
Query: 80 -----------------------FKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLG 116
++R+ A + G+R+ Y L LG L G
Sbjct: 291 RTLHDVWNMVNHIGQPVSSAPGDTRRRSVACATTTRAERGLRIAHLSYADAPLQLGMLNG 350
Query: 117 NRFTITLRGV-----------VVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLV 165
N FTITLR V + + + +GFINYFG+QRFG+G V TH +
Sbjct: 351 NEFTITLRDVRWADTTELGSDAAELRAFLATRVQEIQAHGFINYFGMQRFGTGFVSTHRI 410
Query: 166 GATLLRGEWKSAVKMILD---------------------------PREGERNE------- 191
G +LRG++ A+ +ILD PR N+
Sbjct: 411 GIAVLRGDYHEALHLILDAGAMEDGSNRSHGSGHDSHNDKHVPTQPRHDAENDDDDDDGA 470
Query: 192 ---ISKAREYYKETDD--IDGTLRKLPRHLVAERAILQCLKK---CPGNYLQALKAIPRT 243
+ +R+ D R +P+ VAERA+L+ +K P + L A + IPR+
Sbjct: 471 PPAVLASRQAQAAVRDQRYHDAYRLMPKKCVAERAVLEKMKAPYWSPTDPLGAFQNIPRS 530
Query: 244 LRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSN 303
LR+MYVH+YQS++WN S RV++ G VVGDLV E
Sbjct: 531 LRLMYVHAYQSYVWNRLVSERVRRFGALKPVVGDLVLVNNMAVE---------------- 574
Query: 304 DADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMND-VA 362
LDE ++V+ +YT+ DVV+P+PG+ V P + +A
Sbjct: 575 -------LDE--------------QSVS-------RYTMQDVVMPMPGADVHLPPDGWLA 606
Query: 363 EVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAET 422
+Y + DG LT S + + G YRR+ Q P LL Y D N L T
Sbjct: 607 SMYEDILRGDG--LTPSSLSSSAQPEYRLKGAYRRMLQMPQHLRHTLLAYNDANATLCAT 664
Query: 423 DLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQP 482
D +++ L + P
Sbjct: 665 D--------------------------------------EEVLLPDHGTQG--------P 678
Query: 483 HVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
V D Q +AL+L LP S YAT+ +RELL+T TS HK L
Sbjct: 679 GAVDVVDKDQQAPFLALQLTFELPPSSYATVMLRELLRTDTSAHLHKELT 728
>gi|260822847|ref|XP_002606813.1| hypothetical protein BRAFLDRAFT_82453 [Branchiostoma floridae]
gi|229292157|gb|EEN62823.1| hypothetical protein BRAFLDRAFT_82453 [Branchiostoma floridae]
Length = 862
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 153/511 (29%), Positives = 231/511 (45%), Gaps = 94/511 (18%)
Query: 34 FHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKL--AALN 91
F L K N +T + + +++ + P F +AG KDKR+V+ Q + L A+ +
Sbjct: 423 FTLCKRNLETLDVIQRLARCVSAHPSDFSYAGVKDKRAVTWQAMAARGVTPDSLRSASAH 482
Query: 92 KRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVV---DSED------VIKASANSLG 142
L +++ F ++ L LG L GN F + LR V + D+ D V+ A+ +S+
Sbjct: 483 PSLRDVQMEKFLLRQQPLHLGNLAGNVFKVLLRDVRLCQGDTRDRRQLEAVVGAAMDSVK 542
Query: 143 RNGFINYFGLQRFGSG---SVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYY 199
GFINYFGLQRFGS S H VG LL+G+ +AV+ +L P + + ++ A+ YY
Sbjct: 543 ETGFINYFGLQRFGSADSKSFAPH-VGRALLKGDMSAAVRCLLHPDPAD-DPVNAAKAYY 600
Query: 200 KETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQ----ALKAIPRTLRMMYVHSYQSF 255
T DI GTL ++P H E +L+ L + GN L+ A +P +R ++VHSY S
Sbjct: 601 MRTGDIPGTLSRMPAHKTRECLLLKALHR-HGNDLEGCTKAFLNVPHAMRALFVHSYCSL 659
Query: 256 LWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVP 315
+WN S R++ +G V GDLV
Sbjct: 660 VWNRMVSHRIRTYG-RRAVEGDLVL----------------------------------- 683
Query: 316 ETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGIN 375
ETD + + VKT+T D++ G Y+I DVVLPL G+ + YP N V E Y ++DG+
Sbjct: 684 ETDAGNRK---VKTLTQTDVDQGNYSIHDVVLPLLGNSIQYPSNRVGEEYARALQEDGME 740
Query: 376 LTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNI 435
+ + +I G+YR V +P D WELL D + L +
Sbjct: 741 RSSFRMRALKLNI---PGDYRHVTARPKDLAWELLRDAD-------------LQDDLRSA 784
Query: 436 VKEEEAVCGNKEKDPSDCMKQSESLSKDI-----KLSTENNEAACAKEVKQPHVESVCGA 490
E +++ G ESLS+ + T E + A
Sbjct: 785 ATEGKSLRG-------------ESLSQTSGGGVERCDTRRGEGSTANGAVSQETRGTDDG 831
Query: 491 DSQGKQMALKLGLTLPSSCYATMAIRELLKT 521
S G ++ L SCYATM +RE++ T
Sbjct: 832 SSHGDSFHVRTRFALDPSCYATMFLREVMNT 862
>gi|52790409|gb|AAH05209.3| PUS7 protein [Homo sapiens]
Length = 311
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 127/408 (31%), Positives = 193/408 (47%), Gaps = 105/408 (25%)
Query: 127 VVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPRE 186
+ ++D ++ + NSL GFINY+G+QRFG+ +VPT+ VG +L+ W + +IL PR
Sbjct: 2 ITGTDDQVQQAMNSLKEIGFINYYGMQRFGTTAVPTYQVGRAILQNSWTEVMDLILKPRS 61
Query: 187 G-ERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKC-PGNYLQALKAIPRTL 244
G E+ + K RE + +T D LRKLP E +L+ L K N + A IPR
Sbjct: 62 GAEKGYLVKCREEWAKTKDPTAALRKLPVKRCVEGQLLRGLSKYGMKNIVSAFGIIPRNN 121
Query: 245 RMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSND 304
R+MY+HSYQS++WN+ S R++ +G + V GDLV KG
Sbjct: 122 RLMYIHSYQSYVWNNMVSKRIEDYGLKP-VPGDLVL-KG--------------------- 158
Query: 305 ADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEV 364
+++++E D+N+ Y+I DVV+PLPG VIYP + + E
Sbjct: 159 -ATATYIEE-------------------DDVNN--YSIHDVVMPLPGFDVIYPKHKIQEA 196
Query: 365 YHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDL 424
Y + D +++ H ++++ S++G YR++ +P + WE++ Y D PL TD+
Sbjct: 197 YREMLTADNLDIDNMRHKIRDY---SLSGAYRKIIIRPQNVSWEVVAYDDPKIPLFNTDV 253
Query: 425 DKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHV 484
D + E K P V
Sbjct: 254 DNL--------------------------------------------------EGKTPPV 263
Query: 485 ESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
+ S+GK ALK+ +LP S YATMAIRE+LK TS+ LN
Sbjct: 264 FA-----SEGKYRALKMDFSLPPSTYATMAIREVLKMDTSIKNQTQLN 306
>gi|297691601|ref|XP_002823168.1| PREDICTED: LOW QUALITY PROTEIN: pseudouridylate synthase 7
homolog-like protein [Pongo abelii]
Length = 701
Score = 191 bits (486), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 126/421 (29%), Positives = 216/421 (51%), Gaps = 57/421 (13%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
+ F L KEN + EA+G ++ LG++P F +AG KDK++++ Q + V K +L +
Sbjct: 302 YTAFTLRKENLEMFEAIGFLAIKLGVIPSDFSYAGLKDKKAITYQAMVVRKVTPERLKNI 361
Query: 91 NKRLIGIRLGDFCY--VKEGLLLGQLLGNRFTITLRGV---VVDSEDV---IKASANSLG 142
K + R+ F V + L LGQL GN F I +R + + DS ++ I + ++
Sbjct: 362 EKEIEKKRMHVFNIRSVDDSLRLGQLKGNHFDIVIRNLKKQINDSANLRERIMEAIENVK 421
Query: 143 RNGFINYFGLQRFGSG-SVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKE 201
+ GF+NY+G QRFG G V T +G LL+ E A+K+ L P + + + +++A++Y+ +
Sbjct: 422 KKGFVNYYGPQRFGKGRKVHTDQIGLALLKNEMMKAIKLFLTPEDLD-DPVNRAKKYFLQ 480
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKK---CPGNYLQALKAIPRTLRMMYVHSYQSFLWN 258
T+D GTL +P V ERA L+ L + +QA ++P ++R+ YVH+Y S +WN
Sbjct: 481 TEDAKGTLSLMPEFKVRERAFLEALHRFGMTEEGCIQAWFSLPHSMRIFYVHAYTSKIWN 540
Query: 259 HAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETD 318
A S R++ +G VV GDLV C +D + E +
Sbjct: 541 EAVSYRLETYGAR-VVQGDLV-CLDEDIDDE----------------------------N 570
Query: 319 HPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTE 378
P+ + +LV T ++++ Y I VVLP+ G + YP N V + YH + DG+
Sbjct: 571 FPNSKIHLV---TEEEVSANMYAIHQVVLPILGYNIQYPKNKVGQWYHDIVSSDGLQTC- 626
Query: 379 SLHNVKEFSITSMT----GNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVN 434
F T++ G YR++ + P + ++L+ D + + + +D+ A + L++
Sbjct: 627 ------RFKFTALKLNVPGCYRQILKHPRNLSYQLMEDHDIDVKMKGSHIDETALSLLIS 680
Query: 435 I 435
Sbjct: 681 F 681
>gi|196001121|ref|XP_002110428.1| hypothetical protein TRIADDRAFT_22091 [Trichoplax adhaerens]
gi|190586379|gb|EDV26432.1| hypothetical protein TRIADDRAFT_22091 [Trichoplax adhaerens]
Length = 636
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 139/427 (32%), Positives = 208/427 (48%), Gaps = 70/427 (16%)
Query: 7 KRKERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGT 66
K K+ DNP +L+F L K N +T +A+ I+K LG F +AG
Sbjct: 199 KDKDNNDNPL--------------YLKFILRKRNVETLDAIHKIAKALGCHLSDFSYAGI 244
Query: 67 KDKRSVSTQRVTVFKQRASKLAALNKRLIG---IRLGDFCYVKEGLLLGQLLGNRFTITL 123
KD R+++ Q+VTV + ++ +++ I+ G++ ++ + LGQL GNRF I L
Sbjct: 245 KDCRAITYQQVTVKNVKPQQMINALQKIKSQEHIQYGNYQFIHTPIRLGQLKGNRFRILL 304
Query: 124 RGV-----------VVDSEDVIKASANSLGRNGFINYFGLQRFGS--GSVPTHLVGATLL 170
R + + D I S + + GFINYFG QRFG +V ++ +G +L
Sbjct: 305 RDIRLQDHDSSLIDIADLHSQIIQSMEEVKKQGFINYFGNQRFGKTISTVNSYDIGLAML 364
Query: 171 RGEWKSAVKMILDPREGE--RNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKK 228
R + K AV++IL + + N +A +YY + D+ TL+K+P + IL+ L +
Sbjct: 365 RRDEKMAVELILSTVDEDISDNATMQALKYYHTSGDLVSTLKKIPSYKSRVYLILKALHR 424
Query: 229 CPGN---YLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDD 285
N Y +AL IP +R +Y+HSY S LWN + R++K+G VV GDLV
Sbjct: 425 YGQNIEGYRKALLNIPHNMRKIYIHSYCSLLWNRLVNYRIEKYGYN-VVEGDLVL----- 478
Query: 286 TEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDV 345
LG V+ + DS+ D + + LVK VT D+ KY I DV
Sbjct: 479 ----LGNVD---------NKPDSTDTDAINQDQ-------LVKLVTKTDLALNKYNIYDV 518
Query: 346 VLPLPGSRVIYPMNDVAEVYHHLAEKDGIN---LTESLHNVKEFSITSMTGNYRRVFQKP 402
VLPL GS+ IYP N VY + DGIN + N+K + G YR++ P
Sbjct: 519 VLPLLGSKTIYPSNTSGSVYKDMLANDGINDSSFVNPMLNIK------IKGAYRKILSVP 572
Query: 403 MDFEWEL 409
D + L
Sbjct: 573 KDVNFSL 579
>gi|291236859|ref|XP_002738360.1| PREDICTED: CG6745-like [Saccoglossus kowalevskii]
Length = 695
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 146/500 (29%), Positives = 244/500 (48%), Gaps = 95/500 (19%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
+ F L K + +T +A+ I+ G P +AG KDK++++TQ + + KL +
Sbjct: 280 YTAFVLEKRDLETLDAIQQIADATGCQPSDISYAGMKDKKAITTQAMVIRGVLPHKLQEI 339
Query: 91 NKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDS---EDVIKASANSLGRNGFI 147
N L IR+G L LGQL GN F I +R +S EDV+ + + +GF+
Sbjct: 340 NDSLPNIRVGTIKRCCAPLKLGQLGGNHFEILIRDATSESYRLEDVVSTAMEHIQEHGFV 399
Query: 148 NYFGLQRFGSGSVPTHL--VGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDDI 205
NY+G QRFGS P VG LL+G K A+ +IL P +G ++ +++A+ +++ T++
Sbjct: 400 NYYGTQRFGSNDSPVTADRVGLALLKGNMKEAINLILMPGDG-KDTVNEAKRHWRNTNNA 458
Query: 206 DGTLRKLPRHLVAERAILQCLKKCPGN---YLQALKAIPRTLRMMYVHSYQSFLWNHAAS 262
TL +PR+ + E +L+ L + + +AL IP +R++YVHSY S +WN AS
Sbjct: 459 KETLSMMPRYKIRECMLLKALHRHGQDNDGCTKALLMIPYYMRVLYVHSYCSLVWNKLAS 518
Query: 263 ARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDG 322
R+Q++G + VV + +G+ T+
Sbjct: 519 YRIQQYGVDVVVGDLVEVTEGNKTQ----------------------------------- 543
Query: 323 RHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHN 382
VK V DI+ +Y+I DVVLPLPG+ V P N V+ +Y L D + HN
Sbjct: 544 ----VKIVEPEDIHKSRYSISDVVLPLPGNTVTMPTNSVSHMYSQLLSSDEL----EQHN 595
Query: 383 VKEFSI-TSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEA 441
+ S+ ++ G+YR++ P + +++LLT +K E+ KE +A
Sbjct: 596 FRISSLKMNIHGDYRKLIAWPRNTQYKLLT--RKSKVYEES-------------CKETKA 640
Query: 442 VCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKL 501
V ++ D ++S++K+++ S+++ ++ C EV + L
Sbjct: 641 VFISQ-----DACSSAQSVNKEVQTSSDDEQSDCNVEV------------------SFDL 677
Query: 502 GLTLPSSCYATMAIRELLKT 521
LPSS YAT+ +RE++KT
Sbjct: 678 ---LPSS-YATVCLREIMKT 693
>gi|296211421|ref|XP_002752402.1| PREDICTED: pseudouridylate synthase 7 homolog-like protein
[Callithrix jacchus]
Length = 701
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 126/421 (29%), Positives = 215/421 (51%), Gaps = 57/421 (13%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
+ F L KEN + EA+G ++ LG++P F +AG KDK++++ Q + V K +L +
Sbjct: 302 YTAFTLRKENLEMFEAIGFLAIKLGVIPSDFSYAGLKDKKAITYQTIVVRKVTPERLKNI 361
Query: 91 NKRLIGIRLGDFCY--VKEGLLLGQLLGNRFTITLRGV---VVDSEDV---IKASANSLG 142
+K + ++ F V + L LGQL GN F I +R + + DS ++ I + ++
Sbjct: 362 DKEIEKKKMNVFNIRSVDDSLRLGQLKGNHFDIVIRNLKKQINDSANLRERISEAIENVK 421
Query: 143 RNGFINYFGLQRFGSG-SVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKE 201
+ GF+NY+G QRFG G V T +G LL+ E A+K+ L P + + + +++A++YY +
Sbjct: 422 KKGFVNYYGPQRFGKGRKVHTDQIGLALLKNEMVKAIKLFLTPEDLD-DPVNRAKKYYLQ 480
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKK---CPGNYLQALKAIPRTLRMMYVHSYQSFLWN 258
T+D GTL +P V ERA+L+ L + +QA ++P ++R+ YVH+Y S +WN
Sbjct: 481 TEDAKGTLSLMPEFKVRERALLEALHRFGMTEEGCIQAWFSLPHSMRIFYVHAYTSKIWN 540
Query: 259 HAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETD 318
A S R+ +G VV GDLV C +D + E +
Sbjct: 541 EAVSYRLATYGAR-VVEGDLV-CLDEDVDDE----------------------------N 570
Query: 319 HPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTE 378
P + V VT + ++ Y I VVLP+ GS + YP N V + YH + DG+
Sbjct: 571 FPSSK---VHLVTEEEGSANTYAIHQVVLPILGSNIQYPKNKVGQWYHDILSSDGLQTC- 626
Query: 379 SLHNVKEFSITSMT----GNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVN 434
F + ++ G YR++ + P + ++L+ D + + + LD+ + + L++
Sbjct: 627 ------RFKVPALKLNVPGCYRQILKHPRNLSYQLIEDHDIDVKMKDPHLDEASLSLLIS 680
Query: 435 I 435
Sbjct: 681 F 681
>gi|402885689|ref|XP_003906281.1| PREDICTED: pseudouridylate synthase 7 homolog-like protein isoform
1 [Papio anubis]
Length = 715
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 134/437 (30%), Positives = 222/437 (50%), Gaps = 62/437 (14%)
Query: 19 RGSENWPE-QLGK--FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQ 75
RG PE Q G + F L KEN + EA+G ++ LG++P F +AG KDK++++ Q
Sbjct: 299 RGKRPLPECQEGNVIYTAFTLRKENLEMFEAIGFLAIKLGVIPSDFSYAGLKDKKAITYQ 358
Query: 76 RVTVFKQRASKLAALNKRLIGIRLGDFCY--VKEGLLLGQLLGNRFTITLRGV---VVDS 130
+ V K +L + K + R+ F V + L LGQL GN F I +R + + DS
Sbjct: 359 AMVVRKVTPERLKNIEKEIENKRMNVFNIRSVDDSLRLGQLKGNHFDIVIRNLKKQINDS 418
Query: 131 ----EDVIKASANSLGRNGFINYFGLQRFGSG-SVPTHLVGATLLRGEWKSAVKMILDPR 185
E V++A N + + GF+NY+G QRFG G V T +G LL+ E A+K+ L P
Sbjct: 419 ANLRERVMEAIEN-VKKKGFVNYYGPQRFGKGRKVHTDQIGLALLKNEMMKAIKLFLTPE 477
Query: 186 EGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKK---CPGNYLQALKAIPR 242
+ + + +++A++Y+ +T+D GTL +P V ERA+L+ L + +QA ++P
Sbjct: 478 DLD-DPVNRAKKYFLQTEDAKGTLSLMPEFKVRERALLEALHRFGMTEEGCIQAWFSLPH 536
Query: 243 TLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESS 302
++R+ YVH+Y S +WN A S R+ +G VV GDLV C +D + E
Sbjct: 537 SMRIFYVHAYTSKIWNEAVSYRLATYGAR-VVEGDLV-CLDEDIDDE------------- 581
Query: 303 NDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVA 362
+ P+ + V VT + ++ Y I VVLP+ G + YP N V
Sbjct: 582 ---------------NFPNSK---VHLVTEEEGSANMYAIHQVVLPILGYNIQYPKNKVG 623
Query: 363 EVYHHLAEKDGINLTESLHNVKEFSITSMT----GNYRRVFQKPMDFEWELLTYIDGNKP 418
+ YH + +DG+ F + ++ G YR++ + P + ++L+ D +
Sbjct: 624 QWYHDILSRDGLQTC-------RFKVPTLKLNVPGCYRQILKHPRNLSYQLMEDHDIDVK 676
Query: 419 LAETDLDKIAKAKLVNI 435
+ + +D+ A + L++
Sbjct: 677 MKGSHIDETALSLLISF 693
>gi|402885691|ref|XP_003906282.1| PREDICTED: pseudouridylate synthase 7 homolog-like protein isoform
2 [Papio anubis]
Length = 712
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 134/437 (30%), Positives = 222/437 (50%), Gaps = 62/437 (14%)
Query: 19 RGSENWPE-QLGK--FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQ 75
RG PE Q G + F L KEN + EA+G ++ LG++P F +AG KDK++++ Q
Sbjct: 296 RGKRPLPECQEGNVIYTAFTLRKENLEMFEAIGFLAIKLGVIPSDFSYAGLKDKKAITYQ 355
Query: 76 RVTVFKQRASKLAALNKRLIGIRLGDFCY--VKEGLLLGQLLGNRFTITLRGV---VVDS 130
+ V K +L + K + R+ F V + L LGQL GN F I +R + + DS
Sbjct: 356 AMVVRKVTPERLKNIEKEIENKRMNVFNIRSVDDSLRLGQLKGNHFDIVIRNLKKQINDS 415
Query: 131 ----EDVIKASANSLGRNGFINYFGLQRFGSG-SVPTHLVGATLLRGEWKSAVKMILDPR 185
E V++A N + + GF+NY+G QRFG G V T +G LL+ E A+K+ L P
Sbjct: 416 ANLRERVMEAIEN-VKKKGFVNYYGPQRFGKGRKVHTDQIGLALLKNEMMKAIKLFLTPE 474
Query: 186 EGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKK---CPGNYLQALKAIPR 242
+ + + +++A++Y+ +T+D GTL +P V ERA+L+ L + +QA ++P
Sbjct: 475 DLD-DPVNRAKKYFLQTEDAKGTLSLMPEFKVRERALLEALHRFGMTEEGCIQAWFSLPH 533
Query: 243 TLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESS 302
++R+ YVH+Y S +WN A S R+ +G VV GDLV C +D + E
Sbjct: 534 SMRIFYVHAYTSKIWNEAVSYRLATYGAR-VVEGDLV-CLDEDIDDE------------- 578
Query: 303 NDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVA 362
+ P+ + V VT + ++ Y I VVLP+ G + YP N V
Sbjct: 579 ---------------NFPNSK---VHLVTEEEGSANMYAIHQVVLPILGYNIQYPKNKVG 620
Query: 363 EVYHHLAEKDGINLTESLHNVKEFSITSMT----GNYRRVFQKPMDFEWELLTYIDGNKP 418
+ YH + +DG+ F + ++ G YR++ + P + ++L+ D +
Sbjct: 621 QWYHDILSRDGLQTC-------RFKVPTLKLNVPGCYRQILKHPRNLSYQLMEDHDIDVK 673
Query: 419 LAETDLDKIAKAKLVNI 435
+ + +D+ A + L++
Sbjct: 674 MKGSHIDETALSLLISF 690
>gi|403301724|ref|XP_003941533.1| PREDICTED: pseudouridylate synthase 7 homolog-like protein isoform
1 [Saimiri boliviensis boliviensis]
Length = 701
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 126/421 (29%), Positives = 214/421 (50%), Gaps = 57/421 (13%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
+ F L KEN + EA+G ++ LG++P F +AG KDK++++ Q + V K +L +
Sbjct: 302 YTAFTLRKENLEMFEAIGFLAIKLGVIPSDFSYAGLKDKKAITYQTMVVRKVTPERLKNI 361
Query: 91 NKRLIGIRLGDFCY--VKEGLLLGQLLGNRFTITLRGV---VVDSEDV---IKASANSLG 142
K + R+ F V + L LGQL GN F I +R + + DS ++ I + ++
Sbjct: 362 EKEIEKKRMNVFNIRSVDDSLRLGQLKGNHFDIVIRNLKKQIDDSANLRERISEAIENVK 421
Query: 143 RNGFINYFGLQRFGSG-SVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKE 201
+ GF+NY+G QRFG G V T +G LL+ E A+K+ L P + + + +++A++YY +
Sbjct: 422 KKGFVNYYGPQRFGKGRKVHTDRIGLALLKNEMAKAIKLFLTPEDLD-DPVNRAKKYYLQ 480
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKK---CPGNYLQALKAIPRTLRMMYVHSYQSFLWN 258
T+D GTL +P V ERA+L+ L + +QA ++P ++R+ YVH+Y S +WN
Sbjct: 481 TEDAKGTLSLMPEFKVRERALLEALHRFGMTEEGCIQAWFSLPHSMRIFYVHAYTSKIWN 540
Query: 259 HAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETD 318
A S R+ +G VV GDLV C +D + E +
Sbjct: 541 EAVSYRLATYGAR-VVEGDLV-CFDEDVDDE----------------------------N 570
Query: 319 HPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTE 378
P+ + V VT + ++ Y I VVLP+ G + YP N V + YH + DG+
Sbjct: 571 FPNSK---VHLVTEEEGSANTYAIHQVVLPILGYNIQYPKNKVGQWYHDILSSDGLQTC- 626
Query: 379 SLHNVKEFSITSMT----GNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVN 434
F + ++ G YR++ + P + ++++ D + + + LD+ A + L++
Sbjct: 627 ------RFKVPALKLNVPGCYRQILKHPRNLSYQVIEDHDIDVKMKDPHLDEAALSLLIS 680
Query: 435 I 435
Sbjct: 681 F 681
>gi|426372241|ref|XP_004053036.1| PREDICTED: pseudouridylate synthase 7 homolog-like protein isoform
2 [Gorilla gorilla gorilla]
Length = 701
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 126/421 (29%), Positives = 217/421 (51%), Gaps = 57/421 (13%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
+ F L KEN + EA+G ++ LG++P F +AG KDK++++ Q + V K +L +
Sbjct: 302 YTAFTLRKENLEMFEAIGFLAIKLGVIPSDFSYAGLKDKKAITYQAMVVRKVTPERLKNI 361
Query: 91 NKRLIGIRLGDFCY--VKEGLLLGQLLGNRFTITLRGV---VVDSEDV---IKASANSLG 142
K + R+ F V + L LGQL GN F I +R + + DS ++ I + ++
Sbjct: 362 EKEIEKKRMNVFNIRSVDDSLRLGQLKGNHFDIVIRNLKKQINDSANLRERIMEAIENVK 421
Query: 143 RNGFINYFGLQRFGSG-SVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKE 201
+ GF+NY+G QRFG G V T +G LL+ E A+K+ L P + + + +++A++Y+ +
Sbjct: 422 KKGFVNYYGPQRFGKGRKVHTDQIGLALLKNEMMKAIKLFLTPEDLD-DPVNRAKKYFLQ 480
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKK---CPGNYLQALKAIPRTLRMMYVHSYQSFLWN 258
T+D GTL +P V ERA+L+ L + +QA ++P ++R+ YVH+Y S +WN
Sbjct: 481 TEDAKGTLSLMPEFKVRERALLEALHRFGMTEEGCIQAWFSLPHSMRIFYVHAYTSKIWN 540
Query: 259 HAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETD 318
A S R++ +G VV GDLV C +D + E +
Sbjct: 541 EAVSYRLETYGAR-VVQGDLV-CLDEDIDDE----------------------------N 570
Query: 319 HPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTE 378
P+G+ +LV T + ++ Y I VVLP+ G + YP N V + YH + +DG+
Sbjct: 571 FPNGKIHLV---TEEEGSANMYAIHQVVLPILGYNIQYPKNKVGQWYHDILGRDGLQTC- 626
Query: 379 SLHNVKEFSITSMT----GNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVN 434
F + ++ G YR++ + P + ++L+ D + + +D+ A + L++
Sbjct: 627 ------RFKVPTLKLNVPGCYRQILKHPRNLSYQLMEDHDIDVKTKGSHIDETALSLLIS 680
Query: 435 I 435
Sbjct: 681 F 681
>gi|426372239|ref|XP_004053035.1| PREDICTED: pseudouridylate synthase 7 homolog-like protein isoform
1 [Gorilla gorilla gorilla]
Length = 713
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 126/421 (29%), Positives = 217/421 (51%), Gaps = 57/421 (13%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
+ F L KEN + EA+G ++ LG++P F +AG KDK++++ Q + V K +L +
Sbjct: 314 YTAFTLRKENLEMFEAIGFLAIKLGVIPSDFSYAGLKDKKAITYQAMVVRKVTPERLKNI 373
Query: 91 NKRLIGIRLGDFCY--VKEGLLLGQLLGNRFTITLRGV---VVDSEDV---IKASANSLG 142
K + R+ F V + L LGQL GN F I +R + + DS ++ I + ++
Sbjct: 374 EKEIEKKRMNVFNIRSVDDSLRLGQLKGNHFDIVIRNLKKQINDSANLRERIMEAIENVK 433
Query: 143 RNGFINYFGLQRFGSG-SVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKE 201
+ GF+NY+G QRFG G V T +G LL+ E A+K+ L P + + + +++A++Y+ +
Sbjct: 434 KKGFVNYYGPQRFGKGRKVHTDQIGLALLKNEMMKAIKLFLTPEDLD-DPVNRAKKYFLQ 492
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKK---CPGNYLQALKAIPRTLRMMYVHSYQSFLWN 258
T+D GTL +P V ERA+L+ L + +QA ++P ++R+ YVH+Y S +WN
Sbjct: 493 TEDAKGTLSLMPEFKVRERALLEALHRFGMTEEGCIQAWFSLPHSMRIFYVHAYTSKIWN 552
Query: 259 HAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETD 318
A S R++ +G VV GDLV C +D + E +
Sbjct: 553 EAVSYRLETYGAR-VVQGDLV-CLDEDIDDE----------------------------N 582
Query: 319 HPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTE 378
P+G+ +LV T + ++ Y I VVLP+ G + YP N V + YH + +DG+
Sbjct: 583 FPNGKIHLV---TEEEGSANMYAIHQVVLPILGYNIQYPKNKVGQWYHDILGRDGLQTC- 638
Query: 379 SLHNVKEFSITSMT----GNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVN 434
F + ++ G YR++ + P + ++L+ D + + +D+ A + L++
Sbjct: 639 ------RFKVPTLKLNVPGCYRQILKHPRNLSYQLMEDHDIDVKTKGSHIDETALSLLIS 692
Query: 435 I 435
Sbjct: 693 F 693
>gi|403301726|ref|XP_003941534.1| PREDICTED: pseudouridylate synthase 7 homolog-like protein isoform
2 [Saimiri boliviensis boliviensis]
Length = 710
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 126/421 (29%), Positives = 214/421 (50%), Gaps = 57/421 (13%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
+ F L KEN + EA+G ++ LG++P F +AG KDK++++ Q + V K +L +
Sbjct: 311 YTAFTLRKENLEMFEAIGFLAIKLGVIPSDFSYAGLKDKKAITYQTMVVRKVTPERLKNI 370
Query: 91 NKRLIGIRLGDFCY--VKEGLLLGQLLGNRFTITLRGV---VVDSEDV---IKASANSLG 142
K + R+ F V + L LGQL GN F I +R + + DS ++ I + ++
Sbjct: 371 EKEIEKKRMNVFNIRSVDDSLRLGQLKGNHFDIVIRNLKKQIDDSANLRERISEAIENVK 430
Query: 143 RNGFINYFGLQRFGSG-SVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKE 201
+ GF+NY+G QRFG G V T +G LL+ E A+K+ L P + + + +++A++YY +
Sbjct: 431 KKGFVNYYGPQRFGKGRKVHTDRIGLALLKNEMAKAIKLFLTPEDLD-DPVNRAKKYYLQ 489
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKK---CPGNYLQALKAIPRTLRMMYVHSYQSFLWN 258
T+D GTL +P V ERA+L+ L + +QA ++P ++R+ YVH+Y S +WN
Sbjct: 490 TEDAKGTLSLMPEFKVRERALLEALHRFGMTEEGCIQAWFSLPHSMRIFYVHAYTSKIWN 549
Query: 259 HAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETD 318
A S R+ +G VV GDLV C +D + E +
Sbjct: 550 EAVSYRLATYGAR-VVEGDLV-CFDEDVDDE----------------------------N 579
Query: 319 HPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTE 378
P+ + V VT + ++ Y I VVLP+ G + YP N V + YH + DG+
Sbjct: 580 FPNSK---VHLVTEEEGSANTYAIHQVVLPILGYNIQYPKNKVGQWYHDILSSDGLQTC- 635
Query: 379 SLHNVKEFSITSMT----GNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVN 434
F + ++ G YR++ + P + ++++ D + + + LD+ A + L++
Sbjct: 636 ------RFKVPALKLNVPGCYRQILKHPRNLSYQVIEDHDIDVKMKDPHLDEAALSLLIS 689
Query: 435 I 435
Sbjct: 690 F 690
>gi|170588061|ref|XP_001898792.1| tRNA pseudouridine synthase D [Brugia malayi]
gi|158593005|gb|EDP31600.1| tRNA pseudouridine synthase D [Brugia malayi]
Length = 553
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 107/264 (40%), Positives = 145/264 (54%), Gaps = 5/264 (1%)
Query: 18 SRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRV 77
SR WP ++ F L KENKDT AL +ISK LGI SFG GTKD+R+++TQRV
Sbjct: 138 SRKRRIWPANRPDYVHFTLCKENKDTHYALSVISKFLGIKNSSFGICGTKDRRALTTQRV 197
Query: 78 TVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKAS 137
++++ +L LN +L GIRL DF + LG L GNRF I LR V SE + +
Sbjct: 198 SLYRCEIERLRKLNAKLRGIRLTDFTSSSKPCKLGDLWGNRFKIILRDVHPFSETDLISR 257
Query: 138 ANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKARE 197
NGFINYFG QRFGS + T +G +L+ +W+ A+K IL PR I A +
Sbjct: 258 IEDFKTNGFINYFGTQRFGSCAFNTAEIGIAILKRQWEVALKSILKPR-NTYGSIRDALD 316
Query: 198 YYKETDDIDGTLRKLP---RHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQS 254
+ ++ L+KL + E +L L K NY A+ + R R +Y+H+YQS
Sbjct: 317 EWNKSGSASDALKKLTGNQAYATIEGQLLSSLSKNQCNYYDAMLKLARNTRSLYIHAYQS 376
Query: 255 FLWNHAASARVQKHGTEHVVVGDL 278
LWN + RV+ G H + GDL
Sbjct: 377 LLWNKVVTRRVKSRGF-HAIAGDL 399
>gi|256073067|ref|XP_002572854.1| tRNA pseudouridine synthase D [Schistosoma mansoni]
Length = 540
Score = 188 bits (478), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 109/278 (39%), Positives = 157/278 (56%), Gaps = 13/278 (4%)
Query: 11 RGDNPFDSRGSE-----NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAG 65
R D+P +++GS N + + F LYKE KDT A+ ++S+ L + P +F FAG
Sbjct: 147 RKDHP-EAKGSRQSRRANGMSKSAPYCHFVLYKEGKDTLSAIQVLSRFLHVGPSTFSFAG 205
Query: 66 TKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRG 125
TKD+R+++TQ VT + L+ LN RL G+RLG+F YV L LG L GN+F + LR
Sbjct: 206 TKDRRAITTQFVTAKGINSKTLSLLNTRLHGLRLGNFSYVSSPLFLGDLDGNQFVVVLRS 265
Query: 126 VVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHL-VGATLLRGEWKSAVKMILDP 184
V VI+ + + GF+NY+GLQRFG S +G L+R +W A+ +IL P
Sbjct: 266 VCA-PRSVIETAVGAWKSTGFVNYYGLQRFGHSSKSKSFEIGKYLIRSKWADAIDLILKP 324
Query: 185 REGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTL 244
+ + K +E + ++ D G P L E+ +L + K G L+A++ +PR L
Sbjct: 325 TYADLPFLRKVKEKFLQSGDAKGCADDCP--LGIEKTLLLGIAKY-GKTLKAIQMLPRNL 381
Query: 245 RMMYVHSYQSFLWNHAASARV--QKHGTEHVVVGDLVF 280
R +YVHSYQSFLWNH AS R+ Q G GDL +
Sbjct: 382 RQLYVHSYQSFLWNHVASLRMTHQNPGDLFAKPGDLYY 419
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 55/132 (41%), Gaps = 39/132 (29%)
Query: 390 SMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKD 449
++ G+YR++ P + ++E Y + PL ++DL +I + N V +
Sbjct: 443 ALPGSYRKLIVVPENVKYEFHEYSNPGIPLVKSDL-QILNGTITNNVLTSAS-------- 493
Query: 450 PSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSC 509
Q+E+ + DI L D K+ A+ L LP S
Sbjct: 494 ------QNETQNNDICL------------------------DKDEKKQAVVLTFDLPKSS 523
Query: 510 YATMAIRELLKT 521
YATMAIREL KT
Sbjct: 524 YATMAIRELTKT 535
>gi|313216271|emb|CBY37611.1| unnamed protein product [Oikopleura dioica]
Length = 571
Score = 188 bits (477), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 154/537 (28%), Positives = 237/537 (44%), Gaps = 128/537 (23%)
Query: 7 KRKERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGT 66
K+ ERGD R P++ + +F L+KEN DT A+ + ++L + + F FAGT
Sbjct: 133 KKGERGDR----RNKRRDPKKKDEKFKFVLWKENMDTTAAVDHLCRILRVNQKLFNFAGT 188
Query: 67 KDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVK-EGLLLGQLLGNRFTITLRG 125
KDKR+++ Q VT K L NK+L +++G+F + + L LG L GN F I LR
Sbjct: 189 KDKRAITAQFVTS-KLTPEVLVVANKKLKNVKVGNFELLNADHLTLGDLKGNEFNIVLRE 247
Query: 126 VVV---------------DSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLL 170
+ D E + + SL GF+NY+GLQRFG+ S+ TH +G +L
Sbjct: 248 CELISGTNDEPESKKAKPDFEATVAKACASLNDKGFVNYYGLQRFGTSSIATHEIGVEIL 307
Query: 171 RGEWKSAVKMILDPRE-GERNE-ISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKK 228
+ + AV ++L PRE RN +++ R+ + ET + + L KLPR E +L LK
Sbjct: 308 KENYAGAVDLLLRPREESARNSFLTETRKIWAETKNANAALDKLPRKYCNEGRVLFGLKD 367
Query: 229 CPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEK 288
P +Y+ AL + R +R MYVH+ QSF+WN AS R+ G ++VGDLV
Sbjct: 368 NPNDYVGALGRLARPMRQMYVHAVQSFIWNRLASFRLSLGG--DILVGDLV--------- 416
Query: 289 ELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLP 348
P+ R L K + N ++I+DVV+
Sbjct: 417 ------------------------------QPNEREKL-KVERVDEENIKNHSIEDVVIS 445
Query: 349 LPGSRVIY-PMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEW 407
+PG V Y P+ + + E G+ NVK++ + G YR++ P D E
Sbjct: 446 MPGFDVCYSPL--LEDFMDKELESLGLTRDSFSGNVKDY---RLPGGYRKLIVLPKDAEA 500
Query: 408 ELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLS 467
++ Y+ + L +V E E
Sbjct: 501 NVIMYVSNEENL---------------LVSERE--------------------------- 518
Query: 468 TENNEAACAKEVKQPHVESVCGADSQGKQ-----MALKLGLTLPSSCYATMAIRELL 519
E ++ E + G + GK+ + + L + LP S YATMA+RE +
Sbjct: 519 ----------EFREEMGEGLLGDKNMGKEGEKVKVGISLKIKLPPSAYATMALREFM 565
>gi|297262141|ref|XP_001091362.2| PREDICTED: pseudouridylate synthase 7 homolog (S. cerevisiae)-like
isoform 1 [Macaca mulatta]
Length = 622
Score = 187 bits (476), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 130/436 (29%), Positives = 220/436 (50%), Gaps = 60/436 (13%)
Query: 19 RGSENWPE-QLGK--FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQ 75
RG PE Q G + F L KEN + EA+G ++ LG++P F +AG KDK++++ Q
Sbjct: 206 RGKRPLPECQEGNVIYTAFTLRKENLEMFEAIGFLAIKLGVIPSDFSYAGLKDKKAITYQ 265
Query: 76 RVTVFKQRASKLAALNKRLIGIRLGDFCY--VKEGLLLGQLLGNRFTITLRGV---VVDS 130
+ V K +L + K + R+ F V + L LGQL GN F I +R + + DS
Sbjct: 266 AMVVRKVTPERLKNIEKEIEKKRMSVFNIRSVDDSLRLGQLKGNHFDIVIRNLKKQINDS 325
Query: 131 EDV---IKASANSLGRNGFINYFGLQRFGSG-SVPTHLVGATLLRGEWKSAVKMILDPRE 186
++ I + ++ + GF+NY+G QRFG G V T +G LL+ E A+K+ L P +
Sbjct: 326 ANLRERIMEAIENVKKKGFVNYYGPQRFGKGRKVHTDQIGLALLKNEMMKAIKLFLTPED 385
Query: 187 GERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKK---CPGNYLQALKAIPRT 243
+ + +++A++Y+ +T+D GTL +P ERA+L+ L + +QA ++P +
Sbjct: 386 LD-DPVNRAKKYFLQTEDAKGTLSLMPEFKARERALLEALHRFGMTEEGCIQAWFSLPHS 444
Query: 244 LRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSN 303
+R+ YVH+Y S +WN A S R+ +G VV GDLV C +D + E
Sbjct: 445 MRIFYVHAYTSKIWNEAVSYRLATYGAR-VVEGDLV-CLDEDIDDE-------------- 488
Query: 304 DADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAE 363
+ P+ + V VT + ++ Y I VVLP+ G + YP N V +
Sbjct: 489 --------------NFPNSK---VHLVTEEEGSANMYAIHQVVLPILGYNIQYPKNKVGQ 531
Query: 364 VYHHLAEKDGINLTESLHNVKEFSITSMT----GNYRRVFQKPMDFEWELLTYIDGNKPL 419
YH + +DG+ F + ++ G YR++ + P + ++L+ D + +
Sbjct: 532 WYHDILSRDGLQTC-------RFKVPTLKLNVPGCYRQILKHPRNLSYQLMEDHDIDVKM 584
Query: 420 AETDLDKIAKAKLVNI 435
+ +D+ A + L++
Sbjct: 585 KGSHIDETALSLLISF 600
>gi|119578270|gb|EAW57866.1| pseudouridylate synthase 7 homolog (S. cerevisiae)-like [Homo
sapiens]
Length = 713
Score = 187 bits (476), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 125/421 (29%), Positives = 216/421 (51%), Gaps = 57/421 (13%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
+ F L KEN + EA+G ++ LG++P F +AG KDK++++ Q + V K +L +
Sbjct: 314 YTAFTLRKENLEMFEAIGFLAIKLGVIPSDFSYAGLKDKKAITYQAMVVRKVTPERLKNI 373
Query: 91 NKRLIGIRLGDFCY--VKEGLLLGQLLGNRFTITLRGV---VVDSEDV---IKASANSLG 142
K + R+ F V + L LGQL GN F I +R + + DS ++ I + ++
Sbjct: 374 EKEIEKKRMNVFNIRSVDDSLRLGQLKGNHFDIVIRNLKKQINDSANLRERIMEAIENVK 433
Query: 143 RNGFINYFGLQRFGSG-SVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKE 201
+ GF+NY+G QRFG G V T +G LL+ E A+K+ L P + + + +++A++Y+ +
Sbjct: 434 KKGFVNYYGPQRFGKGRKVHTDQIGLALLKNEMMKAIKLFLTPEDLD-DPVNRAKKYFLQ 492
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKK---CPGNYLQALKAIPRTLRMMYVHSYQSFLWN 258
T+D GTL +P V ERA+L+ L + +QA ++P ++R+ YVH+Y S +WN
Sbjct: 493 TEDAKGTLSLMPEFKVRERALLEALHRFGMTEEGCIQAWFSLPHSMRIFYVHAYTSKIWN 552
Query: 259 HAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETD 318
A S R++ +G VV GDLV C +D + E +
Sbjct: 553 EAVSYRLETYGAR-VVQGDLV-CLDEDIDDE----------------------------N 582
Query: 319 HPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTE 378
P+ + +LV T + ++ Y I VVLP+ G + YP N V + YH + +DG+
Sbjct: 583 FPNSKIHLV---TEEEGSANMYAIHQVVLPVLGYNIQYPKNKVGQWYHDILSRDGLQTC- 638
Query: 379 SLHNVKEFSITSMT----GNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVN 434
F + ++ G YR++ + P + ++L+ D + + +D+ A + L++
Sbjct: 639 ------RFKVPTLKLNIPGCYRQILKHPCNLSYQLMEDHDIDVKTKGSHIDETALSLLIS 692
Query: 435 I 435
Sbjct: 693 F 693
>gi|296487728|tpg|DAA29841.1| TPA: CG6745-like [Bos taurus]
Length = 702
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 126/397 (31%), Positives = 208/397 (52%), Gaps = 59/397 (14%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
+ F L KEN + EA+G ++ LG++P F +AG KDK++++ Q + V K +L +
Sbjct: 303 YTAFTLRKENLEMFEAVGFLAVKLGVIPSDFSYAGLKDKKAITYQAMVVRKVTPERLKNI 362
Query: 91 NKRLIGIRLGDFCY--VKEGLLLGQLLGNRFTITLRGV---VVDS----EDVIKASANSL 141
K + R+ F V++ L LGQL GN F I +R + + DS E +++A N +
Sbjct: 363 EKEVEKKRMNVFNIRSVEDSLRLGQLKGNHFDIVIRNLKNQINDSANLRERILEAIEN-V 421
Query: 142 GRNGFINYFGLQRFGSG-SVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYK 200
GF+NY+G QRFG G V T +G LL+ E AVK+ P + + + +++A++Y+
Sbjct: 422 KNKGFVNYYGPQRFGMGRKVHTDQIGLALLKSETVKAVKLFFTPEDLD-DPVNRAKKYFL 480
Query: 201 ETDDIDGTLRKLPRHLVAERAILQCLKK---CPGNYLQALKAIPRTLRMMYVHSYQSFLW 257
+T+D GTL +P V ERA+L+ L + Y+QA + P +LR+ YVH+Y S +W
Sbjct: 481 QTEDAKGTLALMPEFKVRERALLESLHRFGVTEEGYIQAWFSFPHSLRIFYVHAYSSKIW 540
Query: 258 NHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPET 317
N A S R++ +G+ VV GDLV C++ DAD+ +++P +
Sbjct: 541 NEAVSYRLETYGS-RVVEGDLV------------CLD--------EDADN----EQLPSS 575
Query: 318 DHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLT 377
V VT + ++ Y I VVLP+ G + YP N V + Y + +DG+
Sbjct: 576 K--------VHLVTEEEESANTYAIHQVVLPVLGCNIQYPKNKVGQWYQEVLSRDGLQTC 627
Query: 378 ESLHNVKEFSITSMT----GNYRRVFQKPMDFEWELL 410
+F I ++ G YR++ + P + ++L+
Sbjct: 628 -------KFKIPTLKLNVPGCYRKILKHPCNLSYQLM 657
>gi|90075520|dbj|BAE87440.1| unnamed protein product [Macaca fascicularis]
Length = 622
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 130/436 (29%), Positives = 220/436 (50%), Gaps = 60/436 (13%)
Query: 19 RGSENWPE-QLGK--FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQ 75
RG PE Q G + F L KEN + EA+G ++ LG++P F +AG KDK++++ Q
Sbjct: 206 RGKRPLPECQEGNVIYTAFTLRKENLEMFEAIGFLAIKLGVIPSDFSYAGLKDKKAITYQ 265
Query: 76 RVTVFKQRASKLAALNKRLIGIRLGDFCY--VKEGLLLGQLLGNRFTITLRGV---VVDS 130
+ V K +L + K + R+ F V + L LGQL GN F I +R + + DS
Sbjct: 266 AMVVRKVTPERLKNIEKEIEKKRMNVFNIRSVDDSLRLGQLKGNHFDIVIRNLKKQINDS 325
Query: 131 EDV---IKASANSLGRNGFINYFGLQRFGSG-SVPTHLVGATLLRGEWKSAVKMILDPRE 186
++ I + ++ + GF+NY+G QRFG G V T +G LL+ E A+K+ L P +
Sbjct: 326 ANLRERIMEAIENVKKKGFVNYYGPQRFGKGRKVHTDQIGLALLKNEMMKAIKLFLTPED 385
Query: 187 GERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKK---CPGNYLQALKAIPRT 243
+ + +++A++Y+ +T+D GTL +P ERA+L+ L + +QA ++P +
Sbjct: 386 LD-DPVNRAKKYFLQTEDAKGTLSLMPEFKARERALLEALHRFGMTEEGCIQAWFSLPHS 444
Query: 244 LRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSN 303
+R+ YVH+Y S +WN A S R+ +G VV GDLV C +D + E
Sbjct: 445 MRIFYVHAYTSKIWNEAVSYRLATYGAR-VVEGDLV-CLDEDIDDE-------------- 488
Query: 304 DADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAE 363
+ P+ + V VT + ++ Y I VVLP+ G + YP N V +
Sbjct: 489 --------------NFPNSK---VHLVTEEEGSANMYAIRQVVLPILGYNIQYPKNKVGQ 531
Query: 364 VYHHLAEKDGINLTESLHNVKEFSITSMT----GNYRRVFQKPMDFEWELLTYIDGNKPL 419
YH + +DG+ F + ++ G YR++ + P + ++L+ D + +
Sbjct: 532 WYHDILSRDGLQTC-------RFKVPTLKLNVPGCYRQILKHPRNLSYQLMEDHDIDVKM 584
Query: 420 AETDLDKIAKAKLVNI 435
+ +D+ A + L++
Sbjct: 585 KGSHIDETALSLLISF 600
>gi|50949955|emb|CAH10521.1| hypothetical protein [Homo sapiens]
Length = 701
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 125/421 (29%), Positives = 216/421 (51%), Gaps = 57/421 (13%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
+ F L KEN + EA+G ++ LG++P F +AG KDK++++ Q + V K +L +
Sbjct: 302 YTAFTLRKENLEMFEAIGFLAIKLGVIPSDFSYAGLKDKKAITYQAMVVRKVTPERLKNI 361
Query: 91 NKRLIGIRLGDFCY--VKEGLLLGQLLGNRFTITLRGV---VVDSEDV---IKASANSLG 142
K + R+ F V + L LGQL GN F I +R + + DS ++ I + ++
Sbjct: 362 EKEIEKKRMNVFNIRSVDDSLRLGQLKGNHFDIVIRNLKKQINDSANLRERIMEAIENVK 421
Query: 143 RNGFINYFGLQRFGSG-SVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKE 201
+ GF+NY+G QRFG G V T +G LL+ E A+K+ L P + + + +++A++Y+ +
Sbjct: 422 KKGFVNYYGPQRFGKGRKVHTDQIGLALLKNEMMKAIKLFLTPEDLD-DPVNRAKKYFLQ 480
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKK---CPGNYLQALKAIPRTLRMMYVHSYQSFLWN 258
T+D GTL +P V ERA+L+ L + +QA ++P ++R+ YVH+Y S +WN
Sbjct: 481 TEDAKGTLSLMPEFKVRERALLEALHRFGMTEEGCIQAWFSLPHSMRIFYVHAYTSKIWN 540
Query: 259 HAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETD 318
A S R++ +G VV GDLV C +D + E +
Sbjct: 541 EAVSYRLETYGAR-VVQGDLV-CLDEDIDDE----------------------------N 570
Query: 319 HPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTE 378
P+ + +LV T + ++ Y I VVLP+ G + YP N V + YH + +DG+
Sbjct: 571 FPNSKIHLV---TEEEGSANMYAIHQVVLPVLGYNIQYPKNKVGQWYHDILSRDGLQTC- 626
Query: 379 SLHNVKEFSITSMT----GNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVN 434
F + ++ G YR++ + P + ++L+ D + + +D+ A + L++
Sbjct: 627 ------RFKVPTLKLNIPGCYRQILKHPCNLSYQLMEDHDIDVKTKGSHIDETALSLLIS 680
Query: 435 I 435
Sbjct: 681 F 681
>gi|46250010|gb|AAH68502.1| Pseudouridylate synthase 7 homolog (S. cerevisiae)-like [Homo
sapiens]
Length = 701
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 126/421 (29%), Positives = 214/421 (50%), Gaps = 57/421 (13%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
+ F L KEN + EA+G ++ LG++P F +AG KDK++++ Q + V K +L +
Sbjct: 302 YTAFTLRKENLEMFEAIGFLAIKLGVIPSDFSYAGLKDKKAITYQAMVVRKVTPERLKNI 361
Query: 91 NKRLIGIRLGDFCY--VKEGLLLGQLLGNRFTITLRGV---VVDSEDV---IKASANSLG 142
K + R+ F V + L LGQL GN F I +R + + DS ++ I + ++
Sbjct: 362 EKEIEKKRMNVFNIRSVDDSLRLGQLKGNHFDIVIRNLKKQINDSANLRERIMEAIENVK 421
Query: 143 RNGFINYFGLQRFGSG-SVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKE 201
+ GF+NY+G QRFG G V T +G LL+ E A+K+ L P + + + +++A++Y+ +
Sbjct: 422 KKGFVNYYGPQRFGKGRKVHTDQIGLALLKNEMMKAIKLFLTPEDLD-DPVNRAKKYFLQ 480
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKK---CPGNYLQALKAIPRTLRMMYVHSYQSFLWN 258
T+D GTL +P V ERA+L+ L + +QA ++P ++R+ YVH+Y S +WN
Sbjct: 481 TEDAKGTLSLMPEFKVRERALLEALHRFGMTEEGCIQAWFSLPHSMRIFYVHAYTSKIWN 540
Query: 259 HAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETD 318
A S R++ +G VV GDLV C +D + E N + HL
Sbjct: 541 EAVSYRLETYGAR-VVQGDLV-CLDEDIDDE-------------NFQNSKIHL------- 578
Query: 319 HPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTE 378
VT + ++ Y I VVLP+ G + YP N V + YH + +DG+
Sbjct: 579 -----------VTEEEGSANMYAIHQVVLPVLGYNIQYPKNKVGQWYHDILSRDGLQTC- 626
Query: 379 SLHNVKEFSITSMT----GNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVN 434
F + ++ G YR++ + P + ++L+ D + + +D+ A + L++
Sbjct: 627 ------RFKVPTLKLNIPGCYRQILKHPCNLSYQLMEDHDIDVKTKGSHIDETALSLLIS 680
Query: 435 I 435
Sbjct: 681 F 681
>gi|148762948|ref|NP_001092084.1| pseudouridylate synthase 7 homolog-like protein isoform a [Homo
sapiens]
gi|148762961|ref|NP_112582.3| pseudouridylate synthase 7 homolog-like protein isoform a [Homo
sapiens]
gi|148762985|ref|NP_001092085.1| pseudouridylate synthase 7 homolog-like protein [Homo sapiens]
gi|74733527|sp|Q9H0K6.1|PUS7L_HUMAN RecName: Full=Pseudouridylate synthase 7 homolog-like protein
gi|12053035|emb|CAB66693.1| hypothetical protein [Homo sapiens]
gi|21708006|gb|AAH33621.1| Pseudouridylate synthase 7 homolog (S. cerevisiae)-like [Homo
sapiens]
gi|117644766|emb|CAL37849.1| hypothetical protein [synthetic construct]
gi|261857786|dbj|BAI45415.1| pseudouridylate synthase 7 homolog (S. cerevisiae)-like [synthetic
construct]
Length = 701
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 125/421 (29%), Positives = 216/421 (51%), Gaps = 57/421 (13%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
+ F L KEN + EA+G ++ LG++P F +AG KDK++++ Q + V K +L +
Sbjct: 302 YTAFTLRKENLEMFEAIGFLAIKLGVIPSDFSYAGLKDKKAITYQAMVVRKVTPERLKNI 361
Query: 91 NKRLIGIRLGDFCY--VKEGLLLGQLLGNRFTITLRGV---VVDSEDV---IKASANSLG 142
K + R+ F V + L LGQL GN F I +R + + DS ++ I + ++
Sbjct: 362 EKEIEKKRMNVFNIRSVDDSLRLGQLKGNHFDIVIRNLKKQINDSANLRERIMEAIENVK 421
Query: 143 RNGFINYFGLQRFGSG-SVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKE 201
+ GF+NY+G QRFG G V T +G LL+ E A+K+ L P + + + +++A++Y+ +
Sbjct: 422 KKGFVNYYGPQRFGKGRKVHTDQIGLALLKNEMMKAIKLFLTPEDLD-DPVNRAKKYFLQ 480
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKK---CPGNYLQALKAIPRTLRMMYVHSYQSFLWN 258
T+D GTL +P V ERA+L+ L + +QA ++P ++R+ YVH+Y S +WN
Sbjct: 481 TEDAKGTLSLMPEFKVRERALLEALHRFGMTEEGCIQAWFSLPHSMRIFYVHAYTSKIWN 540
Query: 259 HAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETD 318
A S R++ +G VV GDLV C +D + E +
Sbjct: 541 EAVSYRLETYGAR-VVQGDLV-CLDEDIDDE----------------------------N 570
Query: 319 HPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTE 378
P+ + +LV T + ++ Y I VVLP+ G + YP N V + YH + +DG+
Sbjct: 571 FPNSKIHLV---TEEEGSANMYAIHQVVLPVLGYNIQYPKNKVGQWYHDILSRDGLQTC- 626
Query: 379 SLHNVKEFSITSMT----GNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVN 434
F + ++ G YR++ + P + ++L+ D + + +D+ A + L++
Sbjct: 627 ------RFKVPTLKLNIPGCYRQILKHPCNLSYQLMEDHDIDVKTKGSHIDETALSLLIS 680
Query: 435 I 435
Sbjct: 681 F 681
>gi|402593856|gb|EJW87783.1| tRNA pseudouridine synthase D [Wuchereria bancrofti]
Length = 546
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 105/258 (40%), Positives = 143/258 (55%), Gaps = 5/258 (1%)
Query: 24 WPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQR 83
WP ++ F L KENKDT AL +ISK LGI SFG GTKD+R+++TQRV++++
Sbjct: 144 WPVNRPDYVHFTLCKENKDTHYALSVISKFLGIKNSSFGICGTKDRRALTTQRVSLYRCE 203
Query: 84 ASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGR 143
+L LN +L GIRL DF + LG L GNRF I LR V SE + +
Sbjct: 204 IERLRKLNAKLRGIRLTDFTSSSKPCKLGDLWGNRFKIILRDVHPFSETDLISRIEDFKA 263
Query: 144 NGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETD 203
NGFINYFG QRFGS + T +G +L+ +W+ A+K IL PR I A + + ++
Sbjct: 264 NGFINYFGTQRFGSCAFNTAEIGIAILKKQWEVALKSILKPR-NTYGSIRDALDEWNKSG 322
Query: 204 DIDGTLRKLP---RHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
L+KL + E +L L K NY A+ + R R +Y+H+YQS LWN
Sbjct: 323 SASDALKKLTGSQAYATIEGQLLSSLSKNQCNYYDAVLKLARNTRSLYIHAYQSLLWNKV 382
Query: 261 ASARVQKHGTEHVVVGDL 278
+ RV+ G H + GDL
Sbjct: 383 VTRRVKSRGF-HAIAGDL 399
>gi|355786018|gb|EHH66201.1| Pseudouridylate synthase 7-like protein-like protein [Macaca
fascicularis]
Length = 715
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 129/436 (29%), Positives = 220/436 (50%), Gaps = 60/436 (13%)
Query: 19 RGSENWPE-QLGK--FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQ 75
RG PE Q G + F L KEN + EA+G ++ LG++P F +AG KDK++++ Q
Sbjct: 299 RGKRPLPECQEGNVIYTAFTLRKENLEMFEAIGFLAIKLGVIPSDFSYAGLKDKKAITYQ 358
Query: 76 RVTVFKQRASKLAALNKRLIGIRLGDFCY--VKEGLLLGQLLGNRFTITLRGV---VVDS 130
+ V K +L + K + R+ F V + L LGQL GN F I +R + + DS
Sbjct: 359 AMVVRKVTPERLKNIEKEIEKKRMNVFNIRPVDDSLRLGQLKGNHFDIVIRNLKKQINDS 418
Query: 131 EDV---IKASANSLGRNGFINYFGLQRFGSG-SVPTHLVGATLLRGEWKSAVKMILDPRE 186
++ I + ++ + GF+NY+G QRFG G V T +G LL+ E A+K+ L P +
Sbjct: 419 ANLRERIMEAIENVKKKGFVNYYGPQRFGKGRKVHTDQIGLALLKNEMMKAIKLFLTPED 478
Query: 187 GERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKK---CPGNYLQALKAIPRT 243
+ + +++A++Y+ +T+D GTL +P ERA+L+ L + +QA ++P +
Sbjct: 479 LD-DPVNRAKKYFLQTEDAKGTLSLMPEFKARERALLEALHRFGMTEEGCIQAWFSLPHS 537
Query: 244 LRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSN 303
+R+ Y+H+Y S +WN A S R+ +G VV GDLV C +D + E
Sbjct: 538 MRIFYIHAYTSKIWNEAVSYRLATYGAR-VVEGDLV-CLDEDIDDE-------------- 581
Query: 304 DADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAE 363
+ P+ + V VT + ++ Y I VVLP+ G + YP N V +
Sbjct: 582 --------------NFPNSK---VHLVTEEEGSANMYAIHQVVLPILGYNIQYPKNKVGQ 624
Query: 364 VYHHLAEKDGINLTESLHNVKEFSITSMT----GNYRRVFQKPMDFEWELLTYIDGNKPL 419
YH + +DG+ F + ++ G YR++ + P + ++L+ D + +
Sbjct: 625 WYHDILSRDGLQTC-------RFKVPTLKLNVPGCYRQILKHPRNLSYQLMEDHDIDVKM 677
Query: 420 AETDLDKIAKAKLVNI 435
+ +D+ A + L++
Sbjct: 678 KGSHIDETALSLLISF 693
>gi|329663325|ref|NP_001192497.1| pseudouridylate synthase 7 homolog-like protein [Bos taurus]
Length = 702
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 126/397 (31%), Positives = 208/397 (52%), Gaps = 59/397 (14%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
+ F L KEN + EA+G ++ LG++P F +AG KDK++++ Q + V K +L +
Sbjct: 303 YTAFTLRKENLEMFEAVGFLAVKLGVIPSDFSYAGLKDKKAITYQAMVVRKVTPERLKNI 362
Query: 91 NKRLIGIRLGDFCY--VKEGLLLGQLLGNRFTITLRGV---VVDS----EDVIKASANSL 141
K + R+ F V++ L LGQL GN F I +R + + DS E +++A N +
Sbjct: 363 EKEVEKKRMNVFNIRSVEDSLRLGQLKGNHFDIVIRNLKNQINDSANLRERILEAIEN-V 421
Query: 142 GRNGFINYFGLQRFGSG-SVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYK 200
GF+NY+G QRFG G V T +G LL+ E AVK+ P + + + +++A++Y+
Sbjct: 422 KNKGFVNYYGPQRFGMGRKVHTDQIGLALLKSETVKAVKLFFTPEDLD-DPVNRAKKYFL 480
Query: 201 ETDDIDGTLRKLPRHLVAERAILQCLKK---CPGNYLQALKAIPRTLRMMYVHSYQSFLW 257
+T+D GTL +P V ERA+L+ L + Y+QA + P +LR+ YVH+Y S +W
Sbjct: 481 QTEDAKGTLALMPEFKVRERALLESLHRFGVTEEGYIQAWFSFPHSLRIFYVHAYSSKIW 540
Query: 258 NHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPET 317
N A S R++ +G+ VV GDLV C++ DAD+ +++P +
Sbjct: 541 NEAVSYRLETYGS-RVVEGDLV------------CLD--------EDADN----EQLPSS 575
Query: 318 DHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLT 377
V VT + ++ Y I VVLP+ G + YP N V + Y + +DG+
Sbjct: 576 K--------VHLVTEEEESANTYAIHQVVLPVLGYNIQYPKNKVGQWYQEVLSRDGLQTC 627
Query: 378 ESLHNVKEFSITSMT----GNYRRVFQKPMDFEWELL 410
+F I ++ G YR++ + P + ++L+
Sbjct: 628 -------KFKIPTLKLNVPGCYRKILKHPCNLSYQLM 657
>gi|335288662|ref|XP_001924942.3| PREDICTED: pseudouridylate synthase 7 homolog (S. cerevisiae)-like
[Sus scrofa]
Length = 702
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 132/409 (32%), Positives = 204/409 (49%), Gaps = 59/409 (14%)
Query: 19 RGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVT 78
R PE+ F L KEN + EA+G ++ LG++P F +AG KDK++++ Q +
Sbjct: 291 RSLRECPERKVIHTAFTLRKENLEMFEAVGFLAIKLGVIPSDFSYAGLKDKKAITYQAMV 350
Query: 79 VFKQRASKLAALNKRLIGIRLG--DFCYVKEGLLLGQLLGNRFTITLRGV---VVDS--- 130
V K +L + K L R+ + V + L LGQL GN F I +R + + DS
Sbjct: 351 VRKVTPERLKNIEKELEKKRMNILNIRSVDDSLRLGQLKGNHFDIVIRNLKNQINDSTSL 410
Query: 131 -EDVIKASANSLGRNGFINYFGLQRFGSG-SVPTHLVGATLLRGEWKSAVKMILDPREGE 188
E +++A N + GF+NY+G QRFG G V T +G LL+ E AVK+ L P + +
Sbjct: 411 RERILEAIEN-VKNKGFVNYYGPQRFGMGRKVHTDQIGLALLKSEMVKAVKLFLTPEDSD 469
Query: 189 RNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKK---CPGNYLQALKAIPRTLR 245
+ +++A++Y+ +TDD GTL +P V ERA+L+ L + +QA + P ++R
Sbjct: 470 -DPVNRAKKYFLQTDDAKGTLSLMPEFKVRERALLESLHRFGMTEEGCVQAWFSFPHSMR 528
Query: 246 MMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDA 305
+ YVH+Y S +WN AAS R+ +G+ VV GDLV C +D
Sbjct: 529 IFYVHAYSSKIWNEAASYRLATYGSR-VVEGDLV-CLEEDV------------------- 567
Query: 306 DDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVY 365
D HL P + V VT D ++ Y I VVLP+ G + YP N V + Y
Sbjct: 568 -DDEHL--------PSSK---VHLVTEEDESANTYAIHQVVLPVLGYNIQYPKNKVGQWY 615
Query: 366 HHLAEKDGINLTESLHNVKEFSITSMT----GNYRRVFQKPMDFEWELL 410
+ +DG+ F I + G YR++ + P + ++L+
Sbjct: 616 QEVLSRDGLQTC-------RFKIPPLKLNVPGCYRKILKHPHNLSYQLI 657
>gi|123413702|ref|XP_001304332.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121885776|gb|EAX91402.1| hypothetical protein TVAG_350960 [Trichomonas vaginalis G3]
Length = 512
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 104/275 (37%), Positives = 154/275 (56%), Gaps = 22/275 (8%)
Query: 33 RFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNK 92
RF L+KEN + QEA+ I L I GFAG KDKR+ +TQ VTV K+
Sbjct: 118 RFTLFKENVNQQEAMAKILARLNITQNQLGFAGNKDKRAATTQYVTVRDVPLQKVVKSLS 177
Query: 93 RLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGL 152
L + G+FC+V L LG L GNRFTI +RG+ + ++ + S+ ++GFINY+G+
Sbjct: 178 NLDKVTCGEFCHVTSPLKLGDLSGNRFTIAIRGLKIGQKE-LDEKIKSIQKSGFINYYGM 236
Query: 153 QRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDDIDGTLRKL 212
QRFG+G TH +G +++G++ +AV I++P EGE I +A+ ++ + D+D + L
Sbjct: 237 QRFGTGETATHKIGILIIQGKYDAAVDAIMNPVEGEEQRIHEAKIAFQRS-DLDKAMELL 295
Query: 213 PRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQ------ 266
P VAER I++ Y + KA+ R RMMYVH+YQS++WN AS R +
Sbjct: 296 PHSAVAERKIVEAAHDTNKKY-EMFKAVDRRQRMMYVHAYQSYIWNKCASKRAEKGFKVL 354
Query: 267 -----------KHGTEHVVVGDLV--FCKGDDTEK 288
K T+ V+ D+V C+GD +K
Sbjct: 355 ETDTVEYKGKIKEPTKKSVLQDVVIPLCEGDTKDK 389
>gi|355564146|gb|EHH20646.1| Pseudouridylate synthase 7-like protein-like protein [Macaca
mulatta]
Length = 715
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 130/436 (29%), Positives = 220/436 (50%), Gaps = 60/436 (13%)
Query: 19 RGSENWPE-QLGK--FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQ 75
RG PE Q G + F L KEN + EA+G ++ LG++P F +AG KDK++++ Q
Sbjct: 299 RGKRPLPECQEGNVIYTAFTLRKENLEMFEAIGFLAIKLGVIPSDFSYAGLKDKKAITYQ 358
Query: 76 RVTVFKQRASKLAALNKRLIGIRLGDFCY--VKEGLLLGQLLGNRFTITLRGV---VVDS 130
+ V K +L + K + R+ F V + L LGQL GN F I +R + + DS
Sbjct: 359 AMVVRKVTPERLKNIEKEIEKKRMNVFNIRSVDDSLRLGQLKGNHFDIVIRNLKKQINDS 418
Query: 131 EDV---IKASANSLGRNGFINYFGLQRFGSG-SVPTHLVGATLLRGEWKSAVKMILDPRE 186
++ I + ++ + GF+NY+G QRFG G V T +G LL+ E A+K+ L P +
Sbjct: 419 ANLRERIMEAIENVKKKGFVNYYGPQRFGKGRKVHTDQIGLALLKNEMMKAIKLFLIPED 478
Query: 187 GERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKK---CPGNYLQALKAIPRT 243
+ + +++A++Y+ +T+D GTL +P ERA+L+ L + +QA ++P +
Sbjct: 479 LD-DPVNRAKKYFLQTEDAKGTLSLMPEFKARERALLEALHRFGMTEEGCIQAWFSLPHS 537
Query: 244 LRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSN 303
+R+ YVH+Y S +WN A S R+ +G VV GDLV C +D + E
Sbjct: 538 MRIFYVHAYTSKIWNEAVSYRLATYGAR-VVEGDLV-CLDEDIDDE-------------- 581
Query: 304 DADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAE 363
+ P+ + V VT + ++ Y I VVLP+ G + YP N V +
Sbjct: 582 --------------NFPNSK---VHLVTEEEGSANMYAIHQVVLPILGYNIQYPKNKVGQ 624
Query: 364 VYHHLAEKDGINLTESLHNVKEFSITSMT----GNYRRVFQKPMDFEWELLTYIDGNKPL 419
YH + +DG+ F + ++ G YR++ + P + ++L+ D + +
Sbjct: 625 WYHDILSRDGLQTC-------RFKVPTLKLNVPGCYRQILKHPRNLSYQLMEDHDIDVKM 677
Query: 420 AETDLDKIAKAKLVNI 435
+ +D+ A + L++
Sbjct: 678 KGSHIDETALSLLISF 693
>gi|332206490|ref|XP_003252326.1| PREDICTED: pseudouridylate synthase 7 homolog-like protein isoform
1 [Nomascus leucogenys]
gi|332206494|ref|XP_003252328.1| PREDICTED: pseudouridylate synthase 7 homolog-like protein isoform
3 [Nomascus leucogenys]
Length = 684
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 121/396 (30%), Positives = 205/396 (51%), Gaps = 57/396 (14%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
+ F L KEN + EA+G ++ LG++P F +AG KDK++++ Q + V K +L +
Sbjct: 285 YTAFTLRKENLEMFEAIGFLAIKLGVIPSDFSYAGLKDKKAITYQAMVVRKVTPERLKNI 344
Query: 91 NKRLIGIRLGDFCY--VKEGLLLGQLLGNRFTITLRGV---VVDSEDV---IKASANSLG 142
K + R+ F V + L LGQL GN F I +R + + DS ++ I + ++
Sbjct: 345 EKEIEKKRMNVFNIRSVDDSLRLGQLKGNHFDIVIRNLKKQINDSANLRERIMEAIENVK 404
Query: 143 RNGFINYFGLQRFGSG-SVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKE 201
+ GF+NY+G QRFG G V T +G LL+ E A+K+ L P + + + +++A++Y+ +
Sbjct: 405 KKGFVNYYGPQRFGKGRKVHTDQIGLALLKNEMMKAIKLFLTPEDLD-DPVNRAKKYFLQ 463
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKK---CPGNYLQALKAIPRTLRMMYVHSYQSFLWN 258
T+D GTL +P V ERA+L+ L + +QA ++P ++R+ YVH+Y S +WN
Sbjct: 464 TEDAKGTLSLMPEFKVRERALLEALHRFGMTEEGCIQAWFSLPHSMRIFYVHAYTSKIWN 523
Query: 259 HAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETD 318
A S R++ +G VV GDLV C +D + E +
Sbjct: 524 EAVSYRLETYGA-RVVQGDLV-CLDEDIDDE----------------------------N 553
Query: 319 HPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTE 378
P+ + +LV T + ++ Y I VVLP+ G + YP N V + YH + +DG+
Sbjct: 554 FPNSKIHLV---TEEEGSANMYAIHQVVLPILGYNIQYPKNKVGQWYHDILSRDGLQTC- 609
Query: 379 SLHNVKEFSITSMT----GNYRRVFQKPMDFEWELL 410
F + ++ G YR++ + P + ++L+
Sbjct: 610 ------RFKVPTLKLNVPGCYRQILKHPRNLSYQLM 639
>gi|163915227|ref|NP_001106585.1| pseudouridylate synthase 7 homolog-like [Xenopus (Silurana)
tropicalis]
gi|160774103|gb|AAI55408.1| LOC100127797 protein [Xenopus (Silurana) tropicalis]
Length = 694
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 124/394 (31%), Positives = 207/394 (52%), Gaps = 64/394 (16%)
Query: 34 FHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFK---QRASKLAAL 90
F L K+N +T EA+ +S +LG+LP F +AG KDK++++ Q + V K +R ++ A+
Sbjct: 299 FTLQKDNLETLEAISYLSCILGVLPSDFSYAGIKDKKAITYQAMVVKKVTPERLKQIDAM 358
Query: 91 NKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDV-------IKASANSLGR 143
+++ G+++ + V + L LG L GN F I +R + S+D+ I+ + ++
Sbjct: 359 SEKK-GMKIKNIHPVNKHLQLGHLSGNHFNIIVRDIQNHSDDLSVYVQERIEEAVYNIKT 417
Query: 144 NGFINYFGLQRFGSG-SVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKET 202
GF+NY+G QRFG G + +H +G LL+ E + AV ++L P E + ++ A++Y+ ET
Sbjct: 418 KGFLNYYGPQRFGKGQNCQSHDIGLALLKEEMERAVTLLLTPDSCE-DPVNNAKQYFIET 476
Query: 203 DDIDGTLRKLPRHLVAERAILQCLKKCPGN---YLQALKAIPRTLRMMYVHSYQSFLWNH 259
D GTL +P + + ER +L+ + + N ++A ++P + R+ Y+H++ S +WN
Sbjct: 477 VDAKGTLALMPHYKIRERMVLRAINRYGMNNEGCVRAWLSLPHSSRIFYIHAFCSKVWNE 536
Query: 260 AASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDH 319
AAS R +GT+ VV GDLV C ES+N+
Sbjct: 537 AASYRFTLYGTK-VVQGDLVDCN-----------------ESANE--------------- 563
Query: 320 PDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTES 379
++LV VTA + S YTID VVLP+PG + YP N + + Y K G+
Sbjct: 564 ----NSLVHIVTAEEEESSAYTIDQVVLPMPGYSIKYPTNKIGQWYSETLAKAGLQSC-- 617
Query: 380 LHNVKEFSITSMT----GNYRRVFQKPMDFEWEL 409
F ++S+ G YR + + P D ++L
Sbjct: 618 -----AFRVSSLQLNVPGCYRHILKYPHDLFYKL 646
>gi|224000407|ref|XP_002289876.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220975084|gb|EED93413.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 706
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 159/558 (28%), Positives = 243/558 (43%), Gaps = 142/558 (25%)
Query: 24 WPEQLGKFLRFHLYKENKDTQEALGLISKMLGILP-RSFGFAGTKDKRSVSTQRVTVFKQ 82
WP+ FLRF LYKEN DT A I ++ + P R +AG KDKR V++Q +V++
Sbjct: 230 WPKDRPDFLRFVLYKENVDTSTATKDIVRIGRLNPKRGVSYAGMKDKRGVTSQFCSVYRI 289
Query: 83 RASKLAALN---------------KRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVV 127
+L ALN + IRLG+F Y + + LG L GNRF I LR
Sbjct: 290 EKEELLALNANKGGNSGGGGNTSTRGFNVIRLGNFHYSSDEVKLGTLAGNRFDIVLRN-- 347
Query: 128 VDSEDV-------------IKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEW 174
VD DV ++ ++ +L + GFINYFG+QRFG S TH VG +L+G++
Sbjct: 348 VDVGDVPGGSDKATHVKCTLEKASKALQQVGFINYFGMQRFGK-SNDTHEVGIAILKGDY 406
Query: 175 KSAVKMILDPREGER--NEISKAREYYKETDDID-----------------GTLRKLPRH 215
++A+ +I+ + E+ +S + + D ID L +L R
Sbjct: 407 EAAIDIIMREKADEQMPRVVSARKAWASRFDSIDVANDEDAAKDAEMKCARSILNELGRF 466
Query: 216 LVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVV 275
+ +E++++ L + P +Y +A +I + +R + G+ V V
Sbjct: 467 MGSEKSVINSLSRKPRDYKRAYSSIAKNMR--------------------KTGGSTEVRV 506
Query: 276 GDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADI 335
GDLV +D+S + T G+ VKTV DI
Sbjct: 507 GDLVLI------------------------EDASLAEGGSGTSGLKGKK--VKTVEEQDI 540
Query: 336 NSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLT--ESLHNVKEFSITSMTG 393
G Y I VVLPL GS++ YP E Y L ++DGI+ + E + + ++ G
Sbjct: 541 ERGVYDISQVVLPLVGSKISYPKGACGEKYDELLKQDGIDKSAFERIGTIDRE--IALGG 598
Query: 394 NYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDC 453
+YRR+ KP D +E+ +Y D +PL +TDL + +L + +KE +D
Sbjct: 599 DYRRLMCKPSDVSFEIKSYTDPVQPLVKTDLMNVNGTELA-----AATISTDKEVHDADT 653
Query: 454 MKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATM 513
++L + L +G TLP S YAT+
Sbjct: 654 AMMEDNL------------------------------------VGLVIGFTLPPSSYATI 677
Query: 514 AIRELLKTSTSVAFHKTL 531
A+REL K TS + L
Sbjct: 678 ALRELTKRPTSSEYQGKL 695
>gi|114645222|ref|XP_001166278.1| PREDICTED: pseudouridylate synthase 7 homolog (S. cerevisiae)-like
isoform 1 [Pan troglodytes]
gi|410222560|gb|JAA08499.1| pseudouridylate synthase 7 homolog-like [Pan troglodytes]
gi|410265694|gb|JAA20813.1| pseudouridylate synthase 7 homolog-like [Pan troglodytes]
gi|410335027|gb|JAA36460.1| pseudouridylate synthase 7 homolog-like [Pan troglodytes]
Length = 701
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 121/396 (30%), Positives = 205/396 (51%), Gaps = 57/396 (14%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
+ F L KEN + EA+G ++ LG++P F +AG KDK++++ Q + V K +L +
Sbjct: 302 YTAFTLRKENLEMFEAIGFLAIKLGVIPSDFSYAGLKDKKAITYQAMVVRKVTPERLKNI 361
Query: 91 NKRLIGIRLGDFCY--VKEGLLLGQLLGNRFTITLRGV---VVDSEDV---IKASANSLG 142
K + R+ F V + L LGQL GN F I +R + + DS ++ I + ++
Sbjct: 362 EKEIEKKRMNVFNIRSVDDSLRLGQLKGNHFDIVIRNLKKQINDSANLRERIMEAIENVK 421
Query: 143 RNGFINYFGLQRFGSG-SVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKE 201
+ GF+NY+G QRFG G V T +G LL+ E A+K+ L P + + + +++A++Y+ +
Sbjct: 422 KKGFVNYYGPQRFGKGRKVHTDQIGLALLKNEMMKAIKLFLTPEDLD-DPVNRAKKYFLQ 480
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKK---CPGNYLQALKAIPRTLRMMYVHSYQSFLWN 258
T+D GTL +P V ERA+L+ L + +QA ++P ++R+ YVH+Y S +WN
Sbjct: 481 TEDAKGTLSLMPEFKVRERALLEALHRFGMTEEGCIQAWFSLPHSMRIFYVHAYTSKIWN 540
Query: 259 HAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETD 318
A S R++ +G VV GDLV C +D + E +
Sbjct: 541 EAVSYRLETYGAR-VVQGDLV-CLDEDIDDE----------------------------N 570
Query: 319 HPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTE 378
P+ + +LV T + ++ Y I VVLP+ G + YP N V + YH + +DG+
Sbjct: 571 FPNSKIHLV---TEEEGSANMYAIHQVVLPILGYNIQYPKNKVGQWYHDILSRDGLQTC- 626
Query: 379 SLHNVKEFSITSMT----GNYRRVFQKPMDFEWELL 410
F + ++ G YR++ + P + ++L+
Sbjct: 627 ------RFKVPTLKLNVPGCYRQILKHPRNLSYQLM 656
>gi|410293422|gb|JAA25311.1| pseudouridylate synthase 7 homolog-like [Pan troglodytes]
Length = 701
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 121/396 (30%), Positives = 205/396 (51%), Gaps = 57/396 (14%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
+ F L KEN + EA+G ++ LG++P F +AG KDK++++ Q + V K +L +
Sbjct: 302 YTAFTLRKENLEMFEAIGFLAIKLGVIPSDFSYAGLKDKKAITYQAMVVRKVTPERLKNI 361
Query: 91 NKRLIGIRLGDFCY--VKEGLLLGQLLGNRFTITLRGV---VVDSEDV---IKASANSLG 142
K + R+ F V + L LGQL GN F I +R + + DS ++ I + ++
Sbjct: 362 EKEIEKKRMNVFNIRSVDDSLRLGQLKGNHFDIVIRNLKKQINDSANLRERIMEAIENVK 421
Query: 143 RNGFINYFGLQRFGSG-SVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKE 201
+ GF+NY+G QRFG G V T +G LL+ E A+K+ L P + + + +++A++Y+ +
Sbjct: 422 KKGFVNYYGPQRFGKGRKVHTDQIGLALLKNEMMKAIKLFLTPEDLD-DPVNRAKKYFLQ 480
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKK---CPGNYLQALKAIPRTLRMMYVHSYQSFLWN 258
T+D GTL +P V ERA+L+ L + +QA ++P ++R+ YVH+Y S +WN
Sbjct: 481 TEDAKGTLSLMPEFKVRERALLEALHRFGMTEEGCIQAWFSLPHSMRIFYVHAYTSKIWN 540
Query: 259 HAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETD 318
A S R++ +G VV GDLV C +D + E +
Sbjct: 541 EAVSYRLETYGAR-VVQGDLV-CLDEDIDDE----------------------------N 570
Query: 319 HPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTE 378
P+ + +LV T + ++ Y I VVLP+ G + YP N V + YH + +DG+
Sbjct: 571 FPNSKIHLV---TEEEGSANMYAIHQVVLPILGYNIQYPKNKVGQWYHDILSRDGLQTC- 626
Query: 379 SLHNVKEFSITSMT----GNYRRVFQKPMDFEWELL 410
F + ++ G YR++ + P + ++L+
Sbjct: 627 ------RFKVPTLKLNVPGCYRQILKHPRNLSYQLM 656
>gi|332839632|ref|XP_003313804.1| PREDICTED: pseudouridylate synthase 7 homolog (S. cerevisiae)-like
isoform 2 [Pan troglodytes]
Length = 713
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 121/396 (30%), Positives = 205/396 (51%), Gaps = 57/396 (14%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
+ F L KEN + EA+G ++ LG++P F +AG KDK++++ Q + V K +L +
Sbjct: 314 YTAFTLRKENLEMFEAIGFLAIKLGVIPSDFSYAGLKDKKAITYQAMVVRKVTPERLKNI 373
Query: 91 NKRLIGIRLGDFCY--VKEGLLLGQLLGNRFTITLRGV---VVDSEDV---IKASANSLG 142
K + R+ F V + L LGQL GN F I +R + + DS ++ I + ++
Sbjct: 374 EKEIEKKRMNVFNIRSVDDSLRLGQLKGNHFDIVIRNLKKQINDSANLRERIMEAIENVK 433
Query: 143 RNGFINYFGLQRFGSG-SVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKE 201
+ GF+NY+G QRFG G V T +G LL+ E A+K+ L P + + + +++A++Y+ +
Sbjct: 434 KKGFVNYYGPQRFGKGRKVHTDQIGLALLKNEMMKAIKLFLTPEDLD-DPVNRAKKYFLQ 492
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKK---CPGNYLQALKAIPRTLRMMYVHSYQSFLWN 258
T+D GTL +P V ERA+L+ L + +QA ++P ++R+ YVH+Y S +WN
Sbjct: 493 TEDAKGTLSLMPEFKVRERALLEALHRFGMTEEGCIQAWFSLPHSMRIFYVHAYTSKIWN 552
Query: 259 HAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETD 318
A S R++ +G VV GDLV C +D + E +
Sbjct: 553 EAVSYRLETYGAR-VVQGDLV-CLDEDIDDE----------------------------N 582
Query: 319 HPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTE 378
P+ + +LV T + ++ Y I VVLP+ G + YP N V + YH + +DG+
Sbjct: 583 FPNSKIHLV---TEEEGSANMYAIHQVVLPILGYNIQYPKNKVGQWYHDILSRDGLQTC- 638
Query: 379 SLHNVKEFSITSMT----GNYRRVFQKPMDFEWELL 410
F + ++ G YR++ + P + ++L+
Sbjct: 639 ------RFKVPTLKLNVPGCYRQILKHPRNLSYQLM 668
>gi|397510829|ref|XP_003825788.1| PREDICTED: pseudouridylate synthase 7 homolog-like protein isoform
1 [Pan paniscus]
Length = 713
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 121/396 (30%), Positives = 205/396 (51%), Gaps = 57/396 (14%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
+ F L KEN + EA+G ++ LG++P F +AG KDK++++ Q + V K +L +
Sbjct: 314 YTAFTLRKENLEMFEAIGFLAIKLGVIPSDFSYAGLKDKKAITYQAMVVRKVTPERLKNI 373
Query: 91 NKRLIGIRLGDFCY--VKEGLLLGQLLGNRFTITLRGV---VVDSEDV---IKASANSLG 142
K + R+ F V + L LGQL GN F I +R + + DS ++ I + ++
Sbjct: 374 EKEIEKKRMNVFNIRSVDDSLRLGQLKGNHFDIVIRNLKKQINDSANLRERIMEAIENVK 433
Query: 143 RNGFINYFGLQRFGSG-SVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKE 201
+ GF+NY+G QRFG G V T +G LL+ E A+K+ L P + + + +++A++Y+ +
Sbjct: 434 KKGFVNYYGPQRFGKGRKVHTDQIGLALLKNEMMKAIKLFLTPEDLD-DPVNRAKKYFLQ 492
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKK---CPGNYLQALKAIPRTLRMMYVHSYQSFLWN 258
T+D GTL +P V ERA+L+ L + +QA ++P ++R+ YVH+Y S +WN
Sbjct: 493 TEDAKGTLSLMPEFKVRERALLEALHRFGMTKEGCIQAWFSLPHSMRIFYVHAYTSKIWN 552
Query: 259 HAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETD 318
A S R++ +G VV GDLV C +D + E +
Sbjct: 553 EAVSYRLETYGAR-VVQGDLV-CLDEDIDDE----------------------------N 582
Query: 319 HPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTE 378
P+ + +LV T + ++ Y I VVLP+ G + YP N V + YH + +DG+
Sbjct: 583 FPNSKIHLV---TEEEGSANMYAIHQVVLPILGYNIQYPKNKVGQWYHDILSRDGLQTC- 638
Query: 379 SLHNVKEFSITSMT----GNYRRVFQKPMDFEWELL 410
F + ++ G YR++ + P + ++L+
Sbjct: 639 ------RFKVPTLKLNVPGCYRQILKHPRNLSYQLM 668
>gi|332839635|ref|XP_003313805.1| PREDICTED: pseudouridylate synthase 7 homolog (S. cerevisiae)-like
isoform 3 [Pan troglodytes]
Length = 839
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 121/396 (30%), Positives = 205/396 (51%), Gaps = 57/396 (14%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
+ F L KEN + EA+G ++ LG++P F +AG KDK++++ Q + V K +L +
Sbjct: 440 YTAFTLRKENLEMFEAIGFLAIKLGVIPSDFSYAGLKDKKAITYQAMVVRKVTPERLKNI 499
Query: 91 NKRLIGIRLGDFCY--VKEGLLLGQLLGNRFTITLRGV---VVDSEDV---IKASANSLG 142
K + R+ F V + L LGQL GN F I +R + + DS ++ I + ++
Sbjct: 500 EKEIEKKRMNVFNIRSVDDSLRLGQLKGNHFDIVIRNLKKQINDSANLRERIMEAIENVK 559
Query: 143 RNGFINYFGLQRFGSG-SVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKE 201
+ GF+NY+G QRFG G V T +G LL+ E A+K+ L P + + + +++A++Y+ +
Sbjct: 560 KKGFVNYYGPQRFGKGRKVHTDQIGLALLKNEMMKAIKLFLTPEDLD-DPVNRAKKYFLQ 618
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKK---CPGNYLQALKAIPRTLRMMYVHSYQSFLWN 258
T+D GTL +P V ERA+L+ L + +QA ++P ++R+ YVH+Y S +WN
Sbjct: 619 TEDAKGTLSLMPEFKVRERALLEALHRFGMTEEGCIQAWFSLPHSMRIFYVHAYTSKIWN 678
Query: 259 HAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETD 318
A S R++ +G VV GDLV C +D + E +
Sbjct: 679 EAVSYRLETYGAR-VVQGDLV-CLDEDIDDE----------------------------N 708
Query: 319 HPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTE 378
P+ + +LV T + ++ Y I VVLP+ G + YP N V + YH + +DG+
Sbjct: 709 FPNSKIHLV---TEEEGSANMYAIHQVVLPILGYNIQYPKNKVGQWYHDILSRDGLQTC- 764
Query: 379 SLHNVKEFSITSM----TGNYRRVFQKPMDFEWELL 410
F + ++ G YR++ + P + ++L+
Sbjct: 765 ------RFKVPTLKLNVPGCYRQILKHPRNLSYQLM 794
>gi|397510831|ref|XP_003825789.1| PREDICTED: pseudouridylate synthase 7 homolog-like protein isoform
2 [Pan paniscus]
Length = 842
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 129/426 (30%), Positives = 215/426 (50%), Gaps = 66/426 (15%)
Query: 3 RNSKKRKERGDNPFDSRGSENWPEQLGK--FLRFHLYKENKDTQEALGLISKMLGILPRS 60
R +K +RG P Q GK + F L KEN + EA+G ++ LG++P
Sbjct: 420 RFREKAHKRGKRPLSEC-------QEGKVIYTAFTLRKENLEMFEAIGFLAIKLGVIPSD 472
Query: 61 FGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCY--VKEGLLLGQLLGNR 118
F +AG KDK++++ Q + V K +L + K + R+ F V + L LGQL GN
Sbjct: 473 FSYAGLKDKKAITYQAMVVRKVTPERLKNIEKEIEKKRMNVFNIRSVDDSLRLGQLKGNH 532
Query: 119 FTITLRGV---VVDSEDV---IKASANSLGRNGFINYFGLQRFGSG-SVPTHLVGATLLR 171
F I +R + + DS ++ I + ++ + GF+NY+G QRFG G V T +G LL+
Sbjct: 533 FDIVIRNLKKQINDSANLRERIMEAIENVKKKGFVNYYGPQRFGKGRKVHTDQIGLALLK 592
Query: 172 GEWKSAVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKK--- 228
E A+K+ L P + + + +++A++Y+ +T+D GTL +P V ERA+L+ L +
Sbjct: 593 NEMMKAIKLFLTPEDLD-DPVNRAKKYFLQTEDAKGTLSLMPEFKVRERALLEALHRFGM 651
Query: 229 CPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEK 288
+QA ++P ++R+ YVH+Y S +WN A S R++ +G VV GDLV C +D +
Sbjct: 652 TKEGCIQAWFSLPHSMRIFYVHAYTSKIWNEAVSYRLETYGAR-VVQGDLV-CLDEDIDD 709
Query: 289 ELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLP 348
E + P+ + +LV T + ++ Y I VVLP
Sbjct: 710 E----------------------------NFPNSKIHLV---TEEEGSANMYAIHQVVLP 738
Query: 349 LPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSM----TGNYRRVFQKPMD 404
+ G + YP N V + YH + +DG+ F + ++ G YR++ + P +
Sbjct: 739 ILGYNIQYPKNKVGQWYHDILSRDGLQTC-------RFKVPTLKLNVPGCYRQILKHPRN 791
Query: 405 FEWELL 410
++L+
Sbjct: 792 LSYQLM 797
>gi|71413619|ref|XP_808942.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70873245|gb|EAN87091.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 658
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 141/416 (33%), Positives = 206/416 (49%), Gaps = 31/416 (7%)
Query: 25 PEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRA 84
P +L KFL F LYKEN D+ AL I+ L + R F+GTKDKR+V+ QRV V
Sbjct: 193 PLRLQKFLHFTLYKENMDSNRALRAIAGHLCLPVRQLLFSGTKDKRAVTLQRVAVRGLSC 252
Query: 85 SKLAALNKRLIG----IRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSE---DVIKAS 137
+L+ +N R G +++ F + GL LG LGN F I LR + +E D++K
Sbjct: 253 ERLSEINDRSFGPDCELKVCGFQEAESGLRLGDTLGNHFLIALRLLPDSTEPSPDMLKVI 312
Query: 138 ANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKARE 197
+G G +NY+G QRFG+ V T VG LL GE++ A++MI + + ++E
Sbjct: 313 QEVIGSVGVVNYYGPQRFGTTEVLTSDVGIKLLSGEFEQALRMIFHSKAIVEPNLLPSKE 372
Query: 198 YYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLW 257
E D L+ LPR+ ER IL+ L KCP ++L AL IPRTL M+Y H+ QS +W
Sbjct: 373 AV-ERRSFDEALKLLPRYCFQERDILKHLVKCPNDFLGALHMIPRTLGMLYCHAVQSLIW 431
Query: 258 NHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGC-VNPEFEYESSNDADDSSHLDEVPE 316
N AS R+++ VG L GD K L + ND D + E
Sbjct: 432 NIMASERLKRG------VGPL---PGDLLLKNLYTHIRERANRPDDNDEDFKILMKE--- 479
Query: 317 TDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPG--SRVIYP--MNDVAEVYHHLAEKD 372
DG +V+ +T D+ +G + + DV+L +PG + YP + E Y +
Sbjct: 480 ----DGLPEVVR-LTEEDVATGLFCLCDVLLTVPGPDEELQYPSIASCTRESYIAALKLR 534
Query: 373 GINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIA 428
G + + N + G YR + KP + L+ +P+ TDL+K+A
Sbjct: 535 GAEMLLNAEN-PLVKVYHYHGAYRPLVVKPRGLKMRLVNTKGPREPIILTDLEKLA 589
>gi|407410102|gb|EKF32667.1| hypothetical protein MOQ_003478 [Trypanosoma cruzi marinkellei]
Length = 677
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 160/517 (30%), Positives = 233/517 (45%), Gaps = 73/517 (14%)
Query: 25 PEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRA 84
P +L KFL F LYKEN D+ AL I+ L + R F+GTKDKR+V+ QRV V
Sbjct: 204 PLRLQKFLHFTLYKENMDSNRALRAIAAHLRLPVRQLLFSGTKDKRAVTLQRVAVRGVSC 263
Query: 85 SKLAALNKRLIG----IRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSE---DVIKAS 137
+L+ +N R G +++ F + GL LG +GN F I LR + +E D++K
Sbjct: 264 ERLSEINDRSFGPDCKVKVCGFQEAENGLRLGDTIGNHFLIALRLLPDSTEPSPDMLKVI 323
Query: 138 ANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKARE 197
+G G +NY+G QRFG+ V T VG LL GE++ A++MI + + ++E
Sbjct: 324 QEVIGSVGVVNYYGPQRFGTTEVLTSDVGIKLLSGEFEQALRMIFHSKAIVEPNLLPSKE 383
Query: 198 YYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLW 257
E D L+ LPR+ ER IL+ L + P ++L AL IPRTL M+Y H+ QS +W
Sbjct: 384 AV-ERRSFDEALKLLPRYCFQERDILKHLVQSPNDFLGALHMIPRTLGMLYCHAVQSLIW 442
Query: 258 NHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPET 317
N AS R+ KHG + GDLV KE +ND D L E
Sbjct: 443 NIMASERL-KHGVGP-LPGDLVLKTWYTHIKERA------NRPDNNDEDFMILLKE---- 490
Query: 318 DHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPG--SRVIYP--MNDVAEVYHHLAEKDG 373
DG +V+ +T D+ +G + + DV+L +PG + YP E Y + G
Sbjct: 491 ---DGLPEVVR-LTEEDVATGLFCLCDVLLTVPGPDEELQYPGIAGCTRESYIAALKLKG 546
Query: 374 INLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLV 433
+ + N + G YR + KP + L+ +P+ TDL+K+
Sbjct: 547 AEMLLNAEN-PLVKVYHYHGAYRPLVVKPKRLKMRLVNAKGPREPIIFTDLEKL------ 599
Query: 434 NIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQ 493
+CG NN E++Q C +
Sbjct: 600 -------TMCGT------------------------NNNGVMNNEIEQ----DTCTTTAV 624
Query: 494 GKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKT 530
K A+ + +LP YAT +RE S S +H T
Sbjct: 625 SK--AIVVEFSLPPGSYATSVLRE-FSISYSEGYHST 658
>gi|147902212|ref|NP_001084797.1| pseudouridylate synthase 7 homolog-like [Xenopus laevis]
gi|47124912|gb|AAH70698.1| MGC83224 protein [Xenopus laevis]
Length = 650
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 122/390 (31%), Positives = 210/390 (53%), Gaps = 56/390 (14%)
Query: 34 FHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFK---QRASKLAAL 90
F L K+N +T EA+ +S LG+LP F +AG KDK++++ Q + V K +R ++ A+
Sbjct: 294 FTLQKDNLETLEAISYLSYSLGVLPSDFSYAGIKDKKAITYQAMVVKKVTPERLKQIEAI 353
Query: 91 NKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLR-------GVVVDSEDVIKASANSLGR 143
+++ G+ + + VK+ L LGQL GN F+I +R G V ++ I+ + ++
Sbjct: 354 SEKK-GMTIHNIHSVKKHLHLGQLSGNHFSIIVRDIQNQNHGSSVCIQERIEEAVYNIKT 412
Query: 144 NGFINYFGLQRFGSG-SVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKET 202
GF+NY+G QRFG G + +H +G LL+ E + AVK++L+P E + ++ A++Y+ ET
Sbjct: 413 KGFLNYYGPQRFGKGQNCQSHDIGLALLKEEMEKAVKLLLNPDSFE-DPVNNAKQYFIET 471
Query: 203 DDIDGTLRKLPRHLVAERAILQCLKKCPGN---YLQALKAIPRTLRMMYVHSYQSFLWNH 259
+D GTL +P + + ER +L+ + + N ++A ++P ++R+ Y+H++ S +WN
Sbjct: 472 EDAKGTLALMPHYKIRERMLLRAINRFGMNNEGCVRAWLSLPHSIRIFYIHAFCSKVWNE 531
Query: 260 AASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDH 319
AAS R +G + VV GDLV C +E++N+
Sbjct: 532 AASYRFTLYGLK-VVQGDLVVC-----------------HETANE--------------- 558
Query: 320 PDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTES 379
++ V VTA + S YTI+ VVLP+PG + YP N++ + Y K G L
Sbjct: 559 ----NSPVHIVTAEEEESSAYTINQVVLPMPGYSIKYPANEIGQWYSETLAKVG--LQSC 612
Query: 380 LHNVKEFSITSMTGNYRRVFQKPMDFEWEL 409
V + ++ G YR + + P + ++L
Sbjct: 613 TFRVGSLQL-NVPGCYRHILKYPHNLFYKL 641
>gi|281340528|gb|EFB16112.1| hypothetical protein PANDA_017720 [Ailuropoda melanoleuca]
Length = 695
Score = 184 bits (468), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 134/422 (31%), Positives = 210/422 (49%), Gaps = 65/422 (15%)
Query: 6 KKRKERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAG 65
K K R + F+ R +Q + F L KEN + EALG ++ LG++P F +AG
Sbjct: 278 KTHKHRKRSLFECR------DQKVIYTAFTLRKENLEMFEALGFLAIKLGVIPSDFSYAG 331
Query: 66 TKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCY--VKEGLLLGQLLGNRFTITL 123
KDK++++ Q + V K +L + K + R+ F V + L LGQL GN F I +
Sbjct: 332 LKDKKAITYQAMVVRKVTPERLKNIEKEIEKKRMNVFNIRSVDDSLRLGQLKGNHFDIII 391
Query: 124 RGV---VVDS----EDVIKASANSLGRNGFINYFGLQRFGSG-SVPTHLVGATLLRGEWK 175
R + + DS E +++A N + GF+NY+G QRFG G V T +G LL+ E
Sbjct: 392 RNLRNQINDSANLRERILEAIEN-VKNKGFVNYYGPQRFGMGRKVHTDQIGLALLKSEMV 450
Query: 176 SAVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKK---CPGN 232
AVK+ L P + + + ++KA++Y+ +T+D GTL +P V ERA+L+ L +
Sbjct: 451 EAVKLFLTPEDLD-DPVNKAKKYFLQTEDAKGTLSMMPEFKVRERALLESLHRFGMTEEG 509
Query: 233 YLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGC 292
+QA + P ++R+ YVH+Y S +WN A S R+ +G+ VV GDLV C +D
Sbjct: 510 CIQAWFSFPHSMRIFYVHAYSSKIWNEAVSYRLATYGSR-VVEGDLV-CLDEDV------ 561
Query: 293 VNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGS 352
D H P+ R V VT + ++ Y I VVLP+ G
Sbjct: 562 --------------DDEHF--------PNSR---VHLVTEEEESANTYAIHRVVLPVLGY 596
Query: 353 RVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMT----GNYRRVFQKPMDFEWE 408
+ YP N V + Y + KDG+ F + ++ G YR++ + P + ++
Sbjct: 597 NIQYPRNKVGQWYQEVLSKDGLQTC-------RFKVPTLKLNVPGCYRQILKHPHNVSYQ 649
Query: 409 LL 410
L+
Sbjct: 650 LM 651
>gi|301784929|ref|XP_002927880.1| PREDICTED: pseudouridylate synthase 7 homolog-like protein-like
[Ailuropoda melanoleuca]
Length = 696
Score = 184 bits (468), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 134/422 (31%), Positives = 210/422 (49%), Gaps = 65/422 (15%)
Query: 6 KKRKERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAG 65
K K R + F+ R +Q + F L KEN + EALG ++ LG++P F +AG
Sbjct: 278 KTHKHRKRSLFECR------DQKVIYTAFTLRKENLEMFEALGFLAIKLGVIPSDFSYAG 331
Query: 66 TKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCY--VKEGLLLGQLLGNRFTITL 123
KDK++++ Q + V K +L + K + R+ F V + L LGQL GN F I +
Sbjct: 332 LKDKKAITYQAMVVRKVTPERLKNIEKEIEKKRMNVFNIRSVDDSLRLGQLKGNHFDIII 391
Query: 124 RGV---VVDS----EDVIKASANSLGRNGFINYFGLQRFGSG-SVPTHLVGATLLRGEWK 175
R + + DS E +++A N + GF+NY+G QRFG G V T +G LL+ E
Sbjct: 392 RNLRNQINDSANLRERILEAIEN-VKNKGFVNYYGPQRFGMGRKVHTDQIGLALLKSEMV 450
Query: 176 SAVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKK---CPGN 232
AVK+ L P + + + ++KA++Y+ +T+D GTL +P V ERA+L+ L +
Sbjct: 451 EAVKLFLTPEDLD-DPVNKAKKYFLQTEDAKGTLSMMPEFKVRERALLESLHRFGMTEEG 509
Query: 233 YLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGC 292
+QA + P ++R+ YVH+Y S +WN A S R+ +G+ VV GDLV C +D
Sbjct: 510 CIQAWFSFPHSMRIFYVHAYSSKIWNEAVSYRLATYGSR-VVEGDLV-CLDEDV------ 561
Query: 293 VNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGS 352
D H P+ R V VT + ++ Y I VVLP+ G
Sbjct: 562 --------------DDEHF--------PNSR---VHLVTEEEESANTYAIHRVVLPVLGY 596
Query: 353 RVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMT----GNYRRVFQKPMDFEWE 408
+ YP N V + Y + KDG+ F + ++ G YR++ + P + ++
Sbjct: 597 NIQYPRNKVGQWYQEVLSKDGLQTC-------RFKVPTLKLNVPGCYRQILKHPHNVSYQ 649
Query: 409 LL 410
L+
Sbjct: 650 LM 651
>gi|449272009|gb|EMC82139.1| Pseudouridylate synthase 7 like protein, partial [Columba livia]
Length = 577
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 122/367 (33%), Positives = 190/367 (51%), Gaps = 48/367 (13%)
Query: 19 RGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVT 78
R ++ + E+ + F L KEN +T EA+G ++ LG+LP F + G KDK++V+ Q +
Sbjct: 167 RSADGFQEKQDLYTGFTLQKENLETLEAIGFLAAELGVLPSDFSYTGIKDKKAVTYQPMV 226
Query: 79 VFKQRASKLAALNKRL--IGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDV--- 133
V K +L + ++ G+R+ + + L LGQL GN F I +R + S D
Sbjct: 227 VKKVTPERLKEIGSKMEKKGMRIHNIHSTCKHLRLGQLKGNHFDIIVRDLKHHSHDPSAD 286
Query: 134 ----IKASANSLGRNGFINYFGLQRFGSG-SVPTHLVGATLLRGEWKSAVKMILDPREGE 188
I + S+ GF+NY+G QRFG G +V T +G LL + AVK+ P + +
Sbjct: 287 LKQRISEAMESVKTKGFVNYYGPQRFGQGQNVQTDQIGLALLNEKMVKAVKLFFTPEDTD 346
Query: 189 RNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKA---IPRTLR 245
+ ++ A+ Y+ +T+D GTL LP V E+ +L+ L + N+ K IP ++R
Sbjct: 347 -DPVNNAKRYFLQTEDAKGTLMMLPEFKVREKMLLRALNRYGVNHEGCTKGWLNIPHSMR 405
Query: 246 MMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDA 305
+ YVH+Y S +WN AAS R++ +GTE VV GDLV N+
Sbjct: 406 IFYVHAYCSKIWNEAASYRLKIYGTE-VVEGDLVL---------------------PNEN 443
Query: 306 DDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVY 365
D+S L++ V VTA++ ++ KY+I+ VVLP+ G + YP N V + Y
Sbjct: 444 DESVSLNDK------------VHVVTASEESANKYSINQVVLPMVGHSIKYPSNKVGQWY 491
Query: 366 HHLAEKD 372
H KD
Sbjct: 492 HERLSKD 498
>gi|348580269|ref|XP_003475901.1| PREDICTED: pseudouridylate synthase 7 homolog-like protein-like
[Cavia porcellus]
Length = 697
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 127/427 (29%), Positives = 213/427 (49%), Gaps = 60/427 (14%)
Query: 27 QLGKFLR--FHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRA 84
Q GK + F L KEN + EA+G ++ LG++P F +AG KDK++++ Q + V K
Sbjct: 293 QEGKIVHTAFTLRKENLEMFEAVGFLAIKLGVIPSDFSYAGLKDKKAITYQAMVVRKVTP 352
Query: 85 SKLAALNKRLIGIRLGDFCY--VKEGLLLGQLLGNRFTITLRGV---VVDSEDV---IKA 136
+L + K + R+ F V + L LGQL GN F I +R + V DS ++ I+
Sbjct: 353 ERLKNIEKEIAKKRMNVFNIRSVSDSLRLGQLKGNHFDIIIRNLKNKVNDSANLRERIQE 412
Query: 137 SANSLGRNGFINYFGLQRFGSG-SVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKA 195
+ ++ GF+NY+G QRFG G V T +G LL+ E AVK+ L P + E + +++A
Sbjct: 413 AIENVKTKGFVNYYGPQRFGQGRKVHTDQIGLALLKSEMVKAVKLFLTPEDLE-DPVNRA 471
Query: 196 REYYKETDDIDGTLRKLPRHLVAERAILQCLKK---CPGNYLQALKAIPRTLRMMYVHSY 252
++++ +T+D GTL +P V ERA+L+ L + +QA + P ++R+ Y+H+Y
Sbjct: 472 KKFFLQTEDAKGTLSLMPEFKVRERALLEALHRFGMTEEGCIQAWFSFPHSMRIFYIHAY 531
Query: 253 QSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLD 312
S +WN A S R+ +G++ VV GDL+ C +D + EY +N
Sbjct: 532 SSKIWNEAVSYRLATYGSK-VVEGDLI-CLDEDID----------EYFPNNK-------- 571
Query: 313 EVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKD 372
V VT + + Y I VVLP+ G YP N V + Y + +D
Sbjct: 572 --------------VHLVTEEEAAASTYAIHQVVLPVLGYNTQYPKNKVGQWYREILSRD 617
Query: 373 GINLTESLHNVKEFSITSMT----GNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIA 428
G+ F + ++ G YR + + P + ++L+ ++ N + +D+
Sbjct: 618 GLQAC-------RFKVPALKLNVPGCYRHILKHPHNLSYQLMGDLETNVKMQGFHIDETT 670
Query: 429 KAKLVNI 435
+ L++
Sbjct: 671 VSLLISF 677
>gi|407849530|gb|EKG04245.1| hypothetical protein TCSYLVIO_004692 [Trypanosoma cruzi]
Length = 657
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 150/473 (31%), Positives = 225/473 (47%), Gaps = 35/473 (7%)
Query: 25 PEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRA 84
P +L KFL F LYKEN D+ AL I+ L + R F+GTKDKR+V+ QRV V
Sbjct: 192 PLRLQKFLHFTLYKENMDSNRALRAIAGHLCLPVRQLLFSGTKDKRAVTLQRVAVRGLSC 251
Query: 85 SKLAALNKRLIG----IRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSE---DVIKAS 137
+L+ +N R G +++ F + GL LG LGN F I LR + +E D++K
Sbjct: 252 ERLSEINDRSFGPDCKLKVCGFQEAESGLRLGDTLGNHFLIALRLLPDSTEPSPDMLKVI 311
Query: 138 ANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKARE 197
+G G +NY+G QRFG+ V T VG LL G+++ A++MI + + ++E
Sbjct: 312 QEVIGSVGVVNYYGPQRFGTTEVLTSDVGIKLLSGDFEQAIRMIFHSKAIVEPNLLPSKE 371
Query: 198 YYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLW 257
E D L+ LPR+ ER IL+ L KCP ++L AL IPRTL M+Y H+ QS +W
Sbjct: 372 AV-ERRSFDEALKLLPRYCFQERDILKHLVKCPNDFLGALHMIPRTLGMLYCHAVQSLIW 430
Query: 258 NHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPET 317
N AS R+ K G + GDL+ KE ND D + L E
Sbjct: 431 NIMASERL-KSGVGP-LPGDLLLKNWYTHIKERA------NRPDDNDEDFTILLKE---- 478
Query: 318 DHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPG--SRVIYP--MNDVAEVYHHLAEKDG 373
DG +V+ +T D+ + + + DV+L +PG + YP + E Y + G
Sbjct: 479 ---DGLPEVVR-LTEEDVATDLFCLCDVLLTIPGPDEELQYPSIASCTRESYIAALKLRG 534
Query: 374 INLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLV 433
+ + N + G YR + KP + L+ +P+ TDL+K+A
Sbjct: 535 AEMLLNAEN-PLVKVYHYHGAYRPLVVKPRGLKMRLVNTKGPREPIILTDLEKLATCDTN 593
Query: 434 NIVKEEEAVCGNK-EKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVE 485
N V N+ E+D S+++ + L + + +E P+ E
Sbjct: 594 N-----NGVMDNEIEQDACTTTAVSKAIVVEFSLPPGSYATSVLREFSIPYSE 641
>gi|344267840|ref|XP_003405773.1| PREDICTED: pseudouridylate synthase 7 homolog-like protein
[Loxodonta africana]
Length = 702
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 128/418 (30%), Positives = 212/418 (50%), Gaps = 60/418 (14%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
+ F L KEN + EA+G ++ LG++P F +AG KDK++++ Q + V K +L +
Sbjct: 303 YTAFTLRKENLEMFEAVGFLAIQLGVIPSDFSYAGLKDKKAITYQAMVVRKVTPERLKNI 362
Query: 91 NKRLIGIRLGDFCY--VKEGLLLGQLLGNRFTITLRGV---VVDS---EDVIKASANSLG 142
K + R+ F V E L LGQL GN F I +R + + DS ++ I + ++
Sbjct: 363 EKEIEKKRMNVFNIRSVDESLRLGQLKGNHFDIIIRNLKKQINDSAHLKERILEAIETVK 422
Query: 143 RNGFINYFGLQRFGSG-SVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKE 201
GF+NY+G QRFG G V T +G LL+ E AVK+ L P + + + ++ A++Y+ +
Sbjct: 423 IKGFVNYYGPQRFGKGRKVHTDQIGLALLKSEMVKAVKLFLMPEDVD-DPVNTAKKYFLQ 481
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKK---CPGNYLQALKAIPRTLRMMYVHSYQSFLWN 258
T+D GT +P V ERA+L+ L + +QA + P ++R+ Y+H+Y S +WN
Sbjct: 482 TEDAKGTRSLMPEFKVRERAMLESLHRFGMTEEGCIQAWFSFPHSMRIFYIHAYSSKIWN 541
Query: 259 HAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETD 318
A S R+ +G+ VV GDLV C++ +F E S
Sbjct: 542 EAVSYRLATYGSR-VVEGDLV------------CLDGDFSDEHS---------------- 572
Query: 319 HPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTE 378
P+ + V VT + ++ YT+ VVLP+ G + YP N V + YH + +DG+
Sbjct: 573 -PNSK---VHVVTEEEESANTYTMHQVVLPILGYNIQYPKNKVGQWYHEILSRDGLQTC- 627
Query: 379 SLHNVKEFSITSMT----GNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKL 432
F + ++ G YR++ + P + ++L I+G+ +T+ I +A L
Sbjct: 628 ------RFKVPALKLNVPGCYRQILKYPHNLSYQL---IEGHDTDVKTEDSCITEAGL 676
>gi|426224653|ref|XP_004006483.1| PREDICTED: pseudouridylate synthase 7 homolog-like protein [Ovis
aries]
Length = 702
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 131/430 (30%), Positives = 215/430 (50%), Gaps = 73/430 (16%)
Query: 12 GDNP-------FDSRGSENWPEQL-------GKFLRFHLYKENKDTQEALGLISKMLGIL 57
DNP F + ++W L + F L KEN + EA+G ++ LG++
Sbjct: 270 ADNPNVVITVRFRVKAHKHWKRSLLECQGRKDTYTAFTLRKENLEMFEAVGFLAVKLGVI 329
Query: 58 PRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCY--VKEGLLLGQLL 115
P F +AG KDK++++ Q + V K +L + K + R+ F V++ L LGQL
Sbjct: 330 PSDFSYAGLKDKKAITYQAMVVRKVTPERLKNIEKEVEKKRMNVFNIRPVEDSLRLGQLK 389
Query: 116 GNRFTITLRGV---VVDS----EDVIKASANSLGRNGFINYFGLQRFGSG-SVPTHLVGA 167
GN F I +R + + DS E +++A N + GF+NY+G QRFG G V T +G
Sbjct: 390 GNHFDIVIRNLKNQINDSANLRERILEAIEN-VKNKGFVNYYGPQRFGMGRKVHTDQIGL 448
Query: 168 TLLRGEWKSAVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLK 227
TLL+ E AVK+ P + + + +++A++Y+ +T+D GTL +P V ERA+L L
Sbjct: 449 TLLKSETVKAVKLFFTPEDLD-DPVNRAKKYFLQTEDAKGTLSLMPEFKVRERALLDSLH 507
Query: 228 K---CPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGD 284
+ +QA + P ++R+ YVH+Y S +WN A S R+ +G+ VV GDLV
Sbjct: 508 RFGVTEEGCIQAWFSFPHSMRIFYVHAYSSKIWNEAVSYRLATYGS-RVVEGDLV----- 561
Query: 285 DTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDD 344
C++ DAD+ +++P + V VT + ++ Y I
Sbjct: 562 -------CLD--------EDADN----EQLPSSK--------VHLVTEEEESANTYAIHQ 594
Query: 345 VVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMT----GNYRRVFQ 400
VVLP+ G + YP N V + Y + +DG+ +F I ++ G YR++ +
Sbjct: 595 VVLPVLGYNIQYPKNKVGQWYQEVLSRDGLQTC-------KFKIPTLKLNVPGCYRKILK 647
Query: 401 KPMDFEWELL 410
P + ++L+
Sbjct: 648 HPCNLSYQLM 657
>gi|338726268|ref|XP_001489331.3| PREDICTED: pseudouridylate synthase 7 homolog-like protein [Equus
caballus]
Length = 702
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 125/394 (31%), Positives = 202/394 (51%), Gaps = 59/394 (14%)
Query: 34 FHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKR 93
F L KEN + EA+G ++ LG++P F +AG KDK++++ Q + V K +L + K
Sbjct: 306 FTLRKENLEMFEAVGFLAIKLGVIPSDFSYAGLKDKKAITYQAMVVRKVTPERLKNIEKE 365
Query: 94 LIGIRLGDFCY--VKEGLLLGQLLGNRFTITLRGV---VVDS----EDVIKASANSLGRN 144
+ R+ F V++ L LGQL GN F I +R + + DS E +++A N +
Sbjct: 366 IEKKRMKVFNIHSVEDSLRLGQLKGNHFDIVIRNLKNQINDSANLKERILEAIEN-VKSK 424
Query: 145 GFINYFGLQRFGSG-SVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETD 203
GF+NY+G QRFG G V T +G LL+ E AVK+ L P + + N +++A++Y+ +T+
Sbjct: 425 GFVNYYGPQRFGMGRKVHTDQIGLALLKSEMVKAVKLFLTPEDLD-NPVNRAKKYFLQTE 483
Query: 204 DIDGTLRKLPRHLVAERAILQCLKK---CPGNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
D GTL +P V ERA+L+ L + +QA ++P ++R+ YVH+Y S +WN A
Sbjct: 484 DAKGTLSLMPELKVRERALLESLHRFGVTEEGCIQAWFSLPHSMRIFYVHAYSSKIWNEA 543
Query: 261 ASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHP 320
S R+ +G+ VV GDLV C +D D H P
Sbjct: 544 VSYRLATYGSR-VVEGDLV-CLDEDV--------------------DDEHF--------P 573
Query: 321 DGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESL 380
+ + V VT + ++ Y I VVLP+ G + YP N V + Y + +DG+
Sbjct: 574 NSK---VHLVTEEEESANSYAIHQVVLPVLGYNIQYPKNKVGQWYQEILSRDGL------ 624
Query: 381 HNVKEFSITSMT----GNYRRVFQKPMDFEWELL 410
F + ++ G YR++ + P + ++L+
Sbjct: 625 -QTYRFKVPTLKLNVPGCYRQILKHPHNLSYQLM 657
>gi|349605120|gb|AEQ00462.1| Pseudouridylate synthase 7-like protein [Equus caballus]
Length = 702
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 125/394 (31%), Positives = 202/394 (51%), Gaps = 59/394 (14%)
Query: 34 FHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKR 93
F L KEN + EA+G ++ LG++P F +AG KDK++++ Q + V K +L + K
Sbjct: 306 FTLRKENLEMFEAVGFLAIKLGVIPSDFSYAGLKDKKAITYQAMVVRKVTPERLKNIEKE 365
Query: 94 LIGIRLGDFCY--VKEGLLLGQLLGNRFTITLRGV---VVDS----EDVIKASANSLGRN 144
+ R+ F V++ L LGQL GN F I +R + + DS E +++A N +
Sbjct: 366 IEKKRMKVFNIHSVEDSLRLGQLKGNHFDIVIRNLKKQINDSANLKERILEAIEN-VKSK 424
Query: 145 GFINYFGLQRFGSG-SVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETD 203
GF+NY+G QRFG G V T +G LL+ E AVK+ L P + + N +++A++Y+ +T+
Sbjct: 425 GFVNYYGPQRFGMGRKVHTDQIGLALLKSEMVKAVKLFLTPEDLD-NPVNRAKKYFLQTE 483
Query: 204 DIDGTLRKLPRHLVAERAILQCLKK---CPGNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
D GTL +P V ERA+L+ L + +QA ++P ++R+ YVH+Y S +WN A
Sbjct: 484 DAKGTLSLMPELKVRERALLESLHRFGVTEEGCIQAWFSLPHSMRIFYVHAYSSKIWNEA 543
Query: 261 ASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHP 320
S R+ +G+ VV GDLV C +D D H P
Sbjct: 544 VSYRLATYGSR-VVEGDLV-CLDEDV--------------------DDEHF--------P 573
Query: 321 DGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESL 380
+ + V VT + ++ Y I VVLP+ G + YP N V + Y + +DG+
Sbjct: 574 NSK---VHLVTEEEESANSYAIHQVVLPVLGYNIQYPKNKVGQWYQEILSRDGL------ 624
Query: 381 HNVKEFSITSMT----GNYRRVFQKPMDFEWELL 410
F + ++ G YR++ + P + ++L+
Sbjct: 625 -QTYRFKVPTLKLNVPGCYRQILKHPHNLSYQLM 657
>gi|300175983|emb|CBK22200.2| unnamed protein product [Blastocystis hominis]
Length = 1067
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 136/408 (33%), Positives = 203/408 (49%), Gaps = 40/408 (9%)
Query: 8 RKERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTK 67
R N F + WP ++ F L K KDT + I ++F GTK
Sbjct: 180 RSAANPNHFHKTQRKQWPYPDRNYVEFTLKKRGKDTMSVINSICNACRRAAKAFTVYGTK 239
Query: 68 DKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVV 127
DKR+++ Q+V ++ S+L ++ I +GDFCYV E +G+ GNRFTITLRG+
Sbjct: 240 DKRAITFQKVVAYRISPSELKTAVAKIRDISIGDFCYVNEPASIGKNRGNRFTITLRGLR 299
Query: 128 VD----SEDVIKA----SANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVK 179
+ S +V+++ + SL G++NY+GLQRFG+ +G +LR EW+SAV
Sbjct: 300 ANNPESSIEVLRSRLDETVASLRTAGYLNYYGLQRFGNRGYNIS-IGCHMLRSEWESAVL 358
Query: 180 MILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGN-YLQALK 238
IL+ + E KA +ET D ++ LP+ E +L+ L K G Y AL
Sbjct: 359 AILE--SSGKGETEKAAAKLRETGDGLEAMKLLPKSFQTESKLLRALGKSGGKGYSNALA 416
Query: 239 AIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFE 298
+IP T R +YVHS QSFL+N SAR+ G + ++ GDLV V+P F
Sbjct: 417 SIPYTRRTLYVHSVQSFLFNRMVSARIDL-GMK-LLPGDLV-----------SPVSPVFP 463
Query: 299 YESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPM 358
+SN A+ + ET + +TA N +Y++ ++VLPLPG P
Sbjct: 464 VSTSNSAESNV------ETLFLQAE---IIEITAE--NQEQYSMHELVLPLPGISTRIPA 512
Query: 359 NDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFE 406
N +A+VY + G+ V+E+ M G+YRR+ +P D E
Sbjct: 513 N-LADVYEKTMNELGLEKDCWSKAVREY---QMHGSYRRMLLRPRDME 556
>gi|67597914|ref|XP_666182.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54657123|gb|EAL35951.1| hypothetical protein Chro.20165 [Cryptosporidium hominis]
Length = 805
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 152/540 (28%), Positives = 242/540 (44%), Gaps = 100/540 (18%)
Query: 20 GSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTV 79
+E W + ++ F +YKEN+DT +A+ +ISK L +SFG AG KD+R ++ QR +
Sbjct: 329 SNERWDPNIPDYIHFTIYKENRDTADAINMISKCLKRNHKSFGIAGLKDRRGITVQRASA 388
Query: 80 FKQRASKL---AALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKA 136
++ +L A IR+ DF Y E + +G L GN F + +R + + ++ K
Sbjct: 389 YRVLEDQLIYSTASKNWDRNIRISDFKYENEQINIGDLNGNLFHVIIRDLEILDTNIQKE 448
Query: 137 SANS-------------LGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILD 183
S N + +GFINYFGLQRFG+ +PT+ +G +LL+ EWK A +IL
Sbjct: 449 SGNEKLTLKMVDKLIGDIKSSGFINYFGLQRFGTSEIPTYKIGISLLKNEWKKAFYLILG 508
Query: 184 PREGERNEIS-KAREYYKE--TDDIDGTLRKLPRH----------LVAERAILQCLKKCP 230
E + S + R++Y + +D + + L H + E+ +Q KC
Sbjct: 509 FDEEKMISYSAEKRKFYDQIINEDFEEYQKSLSNHSYLEKLLLNGFIKEKKKIQSNTKCK 568
Query: 231 GN---YLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTE 287
Y +++ +P+ +Y+HS QS +N AS R++K G + V+GDLV
Sbjct: 569 AKEDIYRESINLLPKNSYSLYIHSLQSLFFNIVASERIKKFG-RNPVIGDLV-------- 619
Query: 288 KELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVL 347
+ P + SN +DS N++ V + + K+TI DVVL
Sbjct: 620 -----IAPNLN-KYSNKNEDSVF-----------SEKNVI--VLESQLELAKFTIQDVVL 660
Query: 348 PLPGSRVIYPMNDVAEVYHHL-AEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFE 406
LPG V YP + E Y L E GI++ E+ + G YR++ P
Sbjct: 661 TLPGDNVAYPP-IMKEKYEELMMEFMGISIQENC--------MGINGTYRKILVVP---- 707
Query: 407 WELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKL 466
+ + Y+ N D +K +K+ I+ + + + + E +KQ
Sbjct: 708 -DYINYVGLNISEKRNDTNKFPDSKV--ILSDLDILTIHPE------LKQ---------- 748
Query: 467 STENNEAACAKEVKQPHVESV-CGADSQGKQM-ALKLGLTLPSSCYATMAIRELLKTSTS 524
E + + P V S C + Q+ L LP S Y TMA+RE L S S
Sbjct: 749 -----ELGTKEPILSPEVMSYKCDDKDENSQVNTLVFSCMLPKSSYVTMALREFLGNSPS 803
>gi|393910219|gb|EFO22545.2| tRNA pseudouridine synthase D [Loa loa]
Length = 549
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 106/264 (40%), Positives = 144/264 (54%), Gaps = 5/264 (1%)
Query: 18 SRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRV 77
+R WP ++ F L KENKDT AL +ISK LGI SFG GTKD+R+++TQRV
Sbjct: 138 TRKRRTWPVDRPDYVHFTLCKENKDTHYALSVISKFLGIKNTSFGICGTKDRRALTTQRV 197
Query: 78 TVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKAS 137
++++ +L LN +L GIRL DF + LG L GNRF I LR V SE +
Sbjct: 198 SLYRCEIQRLRELNAKLRGIRLTDFTSNSKPCKLGDLWGNRFKIILRDVHPFSETDLVDR 257
Query: 138 ANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKARE 197
NGFINYFG QRFGS + T +G +L+ EW+ A+K IL PR I +A +
Sbjct: 258 IEDFKSNGFINYFGTQRFGSCAFNTAEIGIAILKKEWEVALKTILKPRNAH-GSIREALD 316
Query: 198 YYKETDDIDGTLRKLP---RHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQS 254
+ ++ + L+KL + E +L L + +Y AL + R R +YVH+YQS
Sbjct: 317 EWNKSGNASTALKKLTGSQAYATIEGQLLSSLSRNKCDYHGALLKLTRNTRSLYVHAYQS 376
Query: 255 FLWNHAASARVQKHGTEHVVVGDL 278
LWN + V+ G V GDL
Sbjct: 377 LLWNKVVTRWVKNRGF-RAVAGDL 399
>gi|417404007|gb|JAA48781.1| Hypothetical protein [Desmodus rotundus]
Length = 701
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 125/395 (31%), Positives = 201/395 (50%), Gaps = 57/395 (14%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
+ F L KEN + EA+G ++ LG++P F +AG KDK++++ Q + V K +L +
Sbjct: 302 YTAFTLRKENVEMFEAVGFLAVKLGVIPSDFSYAGLKDKKAITYQAMVVRKVIPERLKNI 361
Query: 91 NKRLIGIRLGDFCY--VKEGLLLGQLLGNRFTITLRGV------VVDSEDVIKASANSLG 142
K + R+ F V + L LGQL GN F I +R + V+ + I + S+
Sbjct: 362 EKEIEKKRMSVFNIRSVDDSLRLGQLKGNHFDIVIRNLKNQINDSVNLRERILEAIESVK 421
Query: 143 RNGFINYFGLQRFGSG-SVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKE 201
GF+NY+G QRFG G V T +G LL+ E AVK+ L P + + + +++A++Y+ +
Sbjct: 422 NKGFVNYYGPQRFGMGKKVHTDQIGLALLKNEMVKAVKLFLTPEDLD-DPVNRAKKYFLQ 480
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKK---CPGNYLQALKAIPRTLRMMYVHSYQSFLWN 258
T+D GTL +P V ERA+L+ L + +QA + P ++R+ Y+H+Y S +WN
Sbjct: 481 TEDAKGTLSLMPEFKVRERALLESLHRFGMTEEGCIQAWFSFPHSMRIFYIHAYSSKVWN 540
Query: 259 HAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETD 318
AAS R+ +G+ VV GDLV C++ D DD HL
Sbjct: 541 EAASYRLATYGS-RVVEGDLV------------CLD--------EDGDD-EHL------- 571
Query: 319 HPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTE 378
P+G+ V VT + ++ Y I VVLP+ G + YP N V Y + DG+
Sbjct: 572 -PNGK---VHLVTEEEESANTYAIHQVVLPVLGYNIRYPKNKVGLWYQEVLSGDGLQTC- 626
Query: 379 SLHNVKEFSITSMT----GNYRRVFQKPMDFEWEL 409
F + ++ G YR++ ++P + ++L
Sbjct: 627 ------RFKVPTLKLNVPGCYRKILKQPHNVSYQL 655
>gi|312077949|ref|XP_003141525.1| tRNA pseudouridine synthase D [Loa loa]
Length = 562
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 106/264 (40%), Positives = 144/264 (54%), Gaps = 5/264 (1%)
Query: 18 SRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRV 77
+R WP ++ F L KENKDT AL +ISK LGI SFG GTKD+R+++TQRV
Sbjct: 149 TRKRRTWPVDRPDYVHFTLCKENKDTHYALSVISKFLGIKNTSFGICGTKDRRALTTQRV 208
Query: 78 TVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKAS 137
++++ +L LN +L GIRL DF + LG L GNRF I LR V SE +
Sbjct: 209 SLYRCEIQRLRELNAKLRGIRLTDFTSNSKPCKLGDLWGNRFKIILRDVHPFSETDLVDR 268
Query: 138 ANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKARE 197
NGFINYFG QRFGS + T +G +L+ EW+ A+K IL PR I +A +
Sbjct: 269 IEDFKSNGFINYFGTQRFGSCAFNTAEIGIAILKKEWEVALKTILKPRNAH-GSIREALD 327
Query: 198 YYKETDDIDGTLRKLP---RHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQS 254
+ ++ + L+KL + E +L L + +Y AL + R R +YVH+YQS
Sbjct: 328 EWNKSGNASTALKKLTGSQAYATIEGQLLSSLSRNKCDYHGALLKLTRNTRSLYVHAYQS 387
Query: 255 FLWNHAASARVQKHGTEHVVVGDL 278
LWN + V+ G V GDL
Sbjct: 388 LLWNKVVTRWVKNRGF-RAVAGDL 410
>gi|393910220|gb|EJD75787.1| tRNA pseudouridine synthase D, variant [Loa loa]
Length = 483
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 106/264 (40%), Positives = 144/264 (54%), Gaps = 5/264 (1%)
Query: 18 SRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRV 77
+R WP ++ F L KENKDT AL +ISK LGI SFG GTKD+R+++TQRV
Sbjct: 138 TRKRRTWPVDRPDYVHFTLCKENKDTHYALSVISKFLGIKNTSFGICGTKDRRALTTQRV 197
Query: 78 TVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKAS 137
++++ +L LN +L GIRL DF + LG L GNRF I LR V SE +
Sbjct: 198 SLYRCEIQRLRELNAKLRGIRLTDFTSNSKPCKLGDLWGNRFKIILRDVHPFSETDLVDR 257
Query: 138 ANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKARE 197
NGFINYFG QRFGS + T +G +L+ EW+ A+K IL PR I +A +
Sbjct: 258 IEDFKSNGFINYFGTQRFGSCAFNTAEIGIAILKKEWEVALKTILKPRNAH-GSIREALD 316
Query: 198 YYKETDDIDGTLRKLP---RHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQS 254
+ ++ + L+KL + E +L L + +Y AL + R R +YVH+YQS
Sbjct: 317 EWNKSGNASTALKKLTGSQAYATIEGQLLSSLSRNKCDYHGALLKLTRNTRSLYVHAYQS 376
Query: 255 FLWNHAASARVQKHGTEHVVVGDL 278
LWN + V+ G V GDL
Sbjct: 377 LLWNKVVTRWVKNRGF-RAVAGDL 399
>gi|345791922|ref|XP_534832.3| PREDICTED: pseudouridylate synthase 7 homolog (S. cerevisiae)-like
[Canis lupus familiaris]
Length = 699
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 131/422 (31%), Positives = 210/422 (49%), Gaps = 65/422 (15%)
Query: 6 KKRKERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAG 65
KK K R + F+ + +Q + F L KEN + EALG ++ LG++P F +AG
Sbjct: 281 KKHKHRKRSLFECQ------DQKVIYTAFTLRKENLEMFEALGFLAIKLGVIPSDFSYAG 334
Query: 66 TKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCY--VKEGLLLGQLLGNRFTITL 123
KDK++++ Q + V K +L + K + R+ F V + L LGQL GN F I +
Sbjct: 335 LKDKKAITYQAMVVRKVSPERLKNIEKEIEKKRMNVFNIRSVDDSLRLGQLKGNHFDIII 394
Query: 124 RGV---VVDS----EDVIKASANSLGRNGFINYFGLQRFGSG-SVPTHLVGATLLRGEWK 175
R V + DS E +++A N + GF+NY+G QRFG G V T +G LL+ E
Sbjct: 395 RNVRNQINDSTNLRERILEAIEN-VKNKGFVNYYGPQRFGMGRKVHTDQIGLALLKSEMV 453
Query: 176 SAVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKK---CPGN 232
AVK+ L P + + + +++A++Y+ +T+D GTL +P V ERA+L+ L +
Sbjct: 454 KAVKLFLTPEDLD-DPVNRAKKYFLQTEDAKGTLSLMPEFKVRERALLESLYRFGMTEEG 512
Query: 233 YLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGC 292
+QA + P ++R+ Y+H+Y S +WN A S R+ +G+ VV GDLV C +D + E
Sbjct: 513 CIQAWFSFPHSMRIFYIHAYSSKIWNEAVSYRLSTYGSR-VVEGDLV-CLDEDIDDE--- 567
Query: 293 VNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGS 352
+ SS V VT + ++ Y I VVLP+ G
Sbjct: 568 -----HFPSSK-----------------------VHLVTEEEESASTYAIHQVVLPVLGY 599
Query: 353 RVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMT----GNYRRVFQKPMDFEWE 408
+ YP N V + Y +DG+ F + ++ G YR++ + P + ++
Sbjct: 600 NIQYPKNKVGQWYQDTLSRDGLQTC-------RFKVPTLKLNVPGCYRQILKHPHNVSYQ 652
Query: 409 LL 410
L+
Sbjct: 653 LM 654
>gi|425876776|ref|NP_001258755.1| pseudouridylate synthase 7 homolog-like protein isoform b [Homo
sapiens]
gi|193783542|dbj|BAG53453.1| unnamed protein product [Homo sapiens]
Length = 388
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 121/403 (30%), Positives = 209/403 (51%), Gaps = 49/403 (12%)
Query: 45 EALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCY 104
EA+G ++ LG++P F +AG KDK++++ Q + V K +L + K + R+ F
Sbjct: 3 EAIGFLAIKLGVIPSDFSYAGLKDKKAITYQAMVVRKVTPERLKNIEKEIEKKRMNVFNI 62
Query: 105 --VKEGLLLGQLLGNRFTITLRGV---VVDSEDV---IKASANSLGRNGFINYFGLQRFG 156
V + L LGQL GN F I +R + + DS ++ I + ++ + GF+NY+G QRFG
Sbjct: 63 RSVDDSLRLGQLKGNHFDIVIRNLKKQINDSANLRERIMEAIENVKKKGFVNYYGPQRFG 122
Query: 157 SG-SVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRH 215
G V T +G LL+ E A+K+ L P + + + +++A++Y+ +T+D GTL +P
Sbjct: 123 KGRKVHTDQIGLALLKNEMMKAIKLFLTPEDLD-DPVNRAKKYFLQTEDAKGTLSLMPEF 181
Query: 216 LVAERAILQCLKK---CPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEH 272
V ERA+L+ L + +QA ++P ++R+ YVH+Y S +WN A S R++ +G
Sbjct: 182 KVRERALLEALHRFGMTEEGCIQAWFSLPHSMRIFYVHAYTSKIWNEAVSYRLETYGAR- 240
Query: 273 VVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTA 332
VV GDLV C +D + E + P+ + +LV T
Sbjct: 241 VVQGDLV-CLDEDIDDE----------------------------NFPNSKIHLV---TE 268
Query: 333 ADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMT 392
+ ++ Y I VVLP+ G + YP N V + YH + +DG L V + ++
Sbjct: 269 EEGSANMYAIHQVVLPVLGYNIQYPKNKVGQWYHDILSRDG--LQTCRFKVPTLKL-NIP 325
Query: 393 GNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNI 435
G YR++ + P + ++L+ D + + +D+ A + L++
Sbjct: 326 GCYRQILKHPCNLSYQLMEDHDIDVKTKGSHIDETALSLLISF 368
>gi|351710921|gb|EHB13840.1| Pseudouridylate synthase 7-like protein [Heterocephalus glaber]
Length = 699
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 124/398 (31%), Positives = 204/398 (51%), Gaps = 52/398 (13%)
Query: 27 QLGKFLR--FHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRA 84
Q GK + F L KEN + EA+G ++ LG++P F +AG KDK++++ Q + V K
Sbjct: 295 QEGKIIHTAFTLRKENLEMFEAVGFLATKLGVIPSDFSYAGLKDKKAITYQAMVVRKVTP 354
Query: 85 SKLAALNKRLIGIRLG--DFCYVKEGLLLGQLLGNRFTITLRGV---VVDSEDV---IKA 136
+L + K + R+ + V + L LGQL GN F I +R + + DS ++ I
Sbjct: 355 ERLKNIEKEIEKKRMNVINIRSVDDSLRLGQLKGNHFDIVIRNLKNKINDSANLRERIWE 414
Query: 137 SANSLGRNGFINYFGLQRFGSG-SVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKA 195
+ ++ GF+NY+G QRFG G V T +G LL+ E AVK+ L P + E + +++A
Sbjct: 415 AIENVKAKGFVNYYGPQRFGKGRKVHTDHIGLALLKSEMVKAVKLFLMPEDSE-DPVNRA 473
Query: 196 REYYKETDDIDGTLRKLPRHLVAERAILQCLKK---CPGNYLQALKAIPRTLRMMYVHSY 252
++Y+ +T++ GTL +P V ERA+L+ L + +QA + P ++R+ Y+H+Y
Sbjct: 474 KKYFLQTENAKGTLSLMPEFKVRERALLEALHRFGMTEEGCIQAWFSFPHSMRIFYIHAY 533
Query: 253 QSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLD 312
S +WN A S R+ +G++ VV GDL+ C LD
Sbjct: 534 SSKIWNEAVSYRLATYGSK-VVKGDLI-C-----------------------------LD 562
Query: 313 EVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKD 372
E + P+ + V VT + +G Y I VVLP+ G + YP N V + Y + +D
Sbjct: 563 EDIDEHFPNSK---VHLVTDEEEAAGTYEIHQVVLPVLGYNIQYPENKVGQWYGEILNRD 619
Query: 373 GINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELL 410
G L V + ++ G YR++ + P + ++L+
Sbjct: 620 G--LQTCTFKVPALKL-NVPGCYRQILKHPRNLSYKLM 654
>gi|440890722|gb|ELR44907.1| Pseudouridylate synthase 7-like protein [Bos grunniens mutus]
Length = 702
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 123/397 (30%), Positives = 202/397 (50%), Gaps = 59/397 (14%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
+ F L KEN + EA+G ++ LG++ F +AG KDK++++ Q + V K +L +
Sbjct: 303 YTAFTLRKENLEMFEAVGFLAVKLGVIASDFSYAGLKDKKAITYQAMVVRKVTPERLKNI 362
Query: 91 NKRLIGIRLGDFCY--VKEGLLLGQLLGNRFTITLRGV---VVDS----EDVIKASANSL 141
K + R+ F V++ L LGQL GN F I +R + + DS E +++A N +
Sbjct: 363 EKEVEKKRMNVFNIRSVEDSLRLGQLKGNHFDIVIRNLKNQINDSANLRERILEAIEN-V 421
Query: 142 GRNGFINYFGLQRFGSG-SVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYK 200
GF+NY+G QRFG G V T +G LL+ E AVK+ P + + + +++A++Y+
Sbjct: 422 KNKGFVNYYGPQRFGMGRKVHTDQIGLALLKSETVKAVKLFFTPEDLD-DPVNRAKKYFL 480
Query: 201 ETDDIDGTLRKLPRHLVAERAILQCLKK---CPGNYLQALKAIPRTLRMMYVHSYQSFLW 257
+T+D GTL +P V ERA+L+ L + +QA + P +LR+ YVH+Y S +W
Sbjct: 481 QTEDAKGTLSLMPEFKVRERALLESLHRFGVTEEGCIQAWFSFPHSLRIFYVHAYSSKIW 540
Query: 258 NHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPET 317
N A S R+ +G+ VV GDLV C +D + E ++P +
Sbjct: 541 NEAVSYRLATYGS-RVVEGDLV-CLDEDVDNE-----------------------QLPSS 575
Query: 318 DHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLT 377
V VT + ++ Y I VVLP+ G + YP N V + Y + +DG+
Sbjct: 576 K--------VHLVTEEEESANTYAIHQVVLPVLGYNIQYPKNKVGQWYQEVLSRDGLQTC 627
Query: 378 ESLHNVKEFSITSMT----GNYRRVFQKPMDFEWELL 410
+F I ++ G YR++ + P + ++L+
Sbjct: 628 -------KFKIPTLKLNVPGCYRKILKHPCNLSYQLM 657
>gi|301122669|ref|XP_002909061.1| pseudouridylate synthase, putative [Phytophthora infestans T30-4]
gi|262099823|gb|EEY57875.1| pseudouridylate synthase, putative [Phytophthora infestans T30-4]
Length = 527
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 114/353 (32%), Positives = 187/353 (52%), Gaps = 49/353 (13%)
Query: 27 QLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASK 86
Q +LRF L K N++ +++ L +F +AGTKDK +V+ Q V V +
Sbjct: 190 QAQVYLRFVLQKTNEEHFACFDRLARHLRRPLSAFSYAGTKDKAAVTFQHVVVTGVTPHQ 249
Query: 87 LAALNK----RLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSE---DVIKASAN 139
L +N G+R+GD YV+ + LG GNRF+I LR + +SE ++I++S
Sbjct: 250 LVGVNSDESGATTGVRVGDLKYVETPMSLGGANGNRFSIVLRRLSAESECTAEMIRSSLE 309
Query: 140 SLGRN----GFINYFGLQRFG--SGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEIS 193
S N GF+NYFG QR G S +V H +GA ++ G+W+ A+K+IL EG+ ++ +
Sbjct: 310 SALDNIKCHGFVNYFGFQRVGMPSKTVRAHQIGAKIIAGKWEEALKLILTVHEGDSDDAA 369
Query: 194 KAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGN-YLQALKAIPRTLRMMYVHSY 252
+A+ +Y E+ D++ L+ +P + ER +LQ LK+ + + Q +++IP + R+MY+H+Y
Sbjct: 370 QAKRHYLESGDVEAALKLMPHGMSVERQLLQGLKRFGSDAFEQVVQSIPFSRRVMYMHAY 429
Query: 253 QSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLD 312
QS+L+N AS R++++G + +V GDL+ +S + D +
Sbjct: 430 QSYLFNRMASYRLRQYGAK-IVAGDLI--------------------QSDIENDKAVKAV 468
Query: 313 EVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVY 365
V E D + H K + V+LPLPG+ V +P N E Y
Sbjct: 469 SVAEADELNNAH--------------KDAVSLVLLPLPGTNVSFPSNATEEAY 507
>gi|197098574|ref|NP_001126936.1| pseudouridylate synthase 7 homolog [Pongo abelii]
gi|55733216|emb|CAH93291.1| hypothetical protein [Pongo abelii]
Length = 448
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 86/192 (44%), Positives = 124/192 (64%), Gaps = 2/192 (1%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+WP+ G + F LYKENKDT +A+ ++SK L + P F + GTKDKR+++ Q + V K
Sbjct: 249 SWPKSRGSYCHFVLYKENKDTMDAINVLSKYLRVKPNIFSYMGTKDKRAITVQEIAVLKI 308
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
A +LA LNK L+ +LG+F Y K L LG+L GN FT+ LR + ++D ++ + NSL
Sbjct: 309 TAQRLAHLNKCLMNFKLGNFSYQKNPLKLGELQGNHFTVVLRN-ITGTDDQVQQAMNSLK 367
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKE 201
GFINY+G+QRFG+ +VPT+ VG +L+ W + +IL PR G E+ + K RE + +
Sbjct: 368 EIGFINYYGMQRFGTTAVPTYQVGRAILQNSWTEVMDLILKPRSGAEKGYLVKCREEWAK 427
Query: 202 TDDIDGTLRKLP 213
T D LRKLP
Sbjct: 428 TKDPTAALRKLP 439
>gi|294882887|ref|XP_002769870.1| tRNA pseudouridine synthase D, putative [Perkinsus marinus ATCC
50983]
gi|239873683|gb|EER02588.1| tRNA pseudouridine synthase D, putative [Perkinsus marinus ATCC
50983]
Length = 675
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 137/438 (31%), Positives = 217/438 (49%), Gaps = 70/438 (15%)
Query: 24 WPEQLGKFLRFHLYKENKDTQEALGLISKMLGIL-PRSFGFAGTKDKRSVSTQRVTVFKQ 82
WP+ +L F++YKEN+DT +A+ I++ +G ++F AGTKD+R + Q+V +++
Sbjct: 245 WPKDQPDYLYFNMYKENRDTAQAISSIARAMGKKNTKAFTVAGTKDRRGCTVQQVCMWRT 304
Query: 83 RASKL--AALNKRLIGI-RLGDFCYVKEGLLLGQLLGNRFTITLRGV--VVDSEDVIKAS 137
+L A L+ RL DF Y + L LG L GNRF + LRG+ +++D+ +A
Sbjct: 305 YIDQLKRAMLSGHWDKFTRLSDFHYSSQKLSLGMLYGNRFYVALRGIKDCPNTDDLDRA- 363
Query: 138 ANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEIS---- 193
N+L GFINYFG+QRFG+ T+ +G ++ G W+ AV++I+ GE N+ +
Sbjct: 364 FNALSTKGFINYFGMQRFGTQLTRTYQIGQAMIAGHWQKAVRLIM----GESNDKALLQH 419
Query: 194 -KAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSY 252
+AR Y +D +L+ +PR + ER I+ L K P YL AL+ +P
Sbjct: 420 DEARRAYLIDNDPVKSLKLMPRMMHIERKIMTLLAKDPNGYLAALQQLP----------- 468
Query: 253 QSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLD 312
L F + T E G + S+D DDS +
Sbjct: 469 ----------------------TPTLSFYDDNTTTTEDGL-------DRSHDDDDS---E 496
Query: 313 EVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKD 372
E H +V +T +I+S Y+I DVVLPLPG YP+N + + Y K+
Sbjct: 497 NCGEQQHSKEEREVVH-ITCDNISS--YSIYDVVLPLPGDNTQYPIN-MNQWYEDFTMKE 552
Query: 373 -GINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLT-YIDGNKPLAETDLDKIAKA 430
G++L + + ++ G+YR + +K D E+EL+ + N+ L TD+D I K
Sbjct: 553 LGLSLQDLKSCRSSGGVFNLPGSYRNILEKAEDVEYELIQPEMALNRTLIPTDIDNITKR 612
Query: 431 KLVNIVKEEEAVCGNKEK 448
EE + G+K+K
Sbjct: 613 DYT-----EEKLNGDKDK 625
>gi|441632504|ref|XP_004089693.1| PREDICTED: pseudouridylate synthase 7 homolog-like protein
[Nomascus leucogenys]
Length = 388
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 116/382 (30%), Positives = 198/382 (51%), Gaps = 57/382 (14%)
Query: 45 EALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCY 104
EA+G ++ LG++P F +AG KDK++++ Q + V K +L + K + R+ F
Sbjct: 3 EAIGFLAIKLGVIPSDFSYAGLKDKKAITYQAMVVRKVTPERLKNIEKEIEKKRMNVFNI 62
Query: 105 --VKEGLLLGQLLGNRFTITLRGV---VVDSEDV---IKASANSLGRNGFINYFGLQRFG 156
V + L LGQL GN F I +R + + DS ++ I + ++ + GF+NY+G QRFG
Sbjct: 63 RSVDDSLRLGQLKGNHFDIVIRNLKKQINDSANLRERIMEAIENVKKKGFVNYYGPQRFG 122
Query: 157 SG-SVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRH 215
G V T +G LL+ E A+K+ L P + + + +++A++Y+ +T+D GTL +P
Sbjct: 123 KGRKVHTDQIGLALLKNEMMKAIKLFLTPEDLD-DPVNRAKKYFLQTEDAKGTLSLMPEF 181
Query: 216 LVAERAILQCLKK---CPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEH 272
V ERA+L+ L + +QA ++P ++R+ YVH+Y S +WN A S R++ +G
Sbjct: 182 KVRERALLEALHRFGMTEEGCIQAWFSLPHSMRIFYVHAYTSKIWNEAVSYRLETYGAR- 240
Query: 273 VVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTA 332
VV GDLV C +D + E + P+ + +LV T
Sbjct: 241 VVQGDLV-CLDEDIDDE----------------------------NFPNSKIHLV---TE 268
Query: 333 ADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMT 392
+ ++ Y I VVLP+ G + YP N V + YH + +DG+ F + ++
Sbjct: 269 EEGSANMYAIHQVVLPILGYNIQYPKNKVGQWYHDILSRDGLQTC-------RFKVPTLK 321
Query: 393 ----GNYRRVFQKPMDFEWELL 410
G YR++ + P + ++L+
Sbjct: 322 LNVPGCYRQILKHPRNLSYQLM 343
>gi|340057498|emb|CCC51844.1| conserved hypothetical protein [Trypanosoma vivax Y486]
Length = 662
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 137/441 (31%), Positives = 216/441 (48%), Gaps = 40/441 (9%)
Query: 3 RNSKKRKERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFG 62
R S++ ++R NP ++ KFL F LYKEN D+ AL ++ LG+ R
Sbjct: 179 RASRREEDRRLNPRHAQ----------KFLHFTLYKENMDSNRALREVAMCLGLPVRRLL 228
Query: 63 FAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIG----IRLGDFCYVKEGLLLGQLLGNR 118
F+GTKDKR+V+ QRV V KL A+N R G +++ F + GL LG LGN
Sbjct: 229 FSGTKDKRAVTLQRVAVQGLAPDKLVAVNSRKFGPECKLKVCGFREMDFGLRLGDTLGNH 288
Query: 119 FTITLRGVVVDSEDVIKASA-----NSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGE 173
F I LR ++ S I A+ ++ G +NY+G QRFG+ T VG LL GE
Sbjct: 289 FQIVLR--LLPSSPEISAATLRQIEETIRHEGVVNYYGSQRFGTTDTLTSDVGVKLLSGE 346
Query: 174 WKSAVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNY 233
++ A++++ + I+ A E + E D D L LPRH ER +L L + P ++
Sbjct: 347 FEQAMRLVFRSKASVTPTIAPASEAF-ERGDYDKALHLLPRHCHQERDVLNHLVRFPRDF 405
Query: 234 LQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCV 293
L A IPRTL M+Y H+ QS +WN AS R+ + GDLV K
Sbjct: 406 LGAFHKIPRTLNMLYCHAVQSLIWNEMASVRLAI--ALKPLSGDLVL-KSRHARALSRAR 462
Query: 294 NPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPG-- 351
P+ + + ++++ L E DG +V+ +T + SG + + D++L +PG
Sbjct: 463 LPQLQKD-----EEAADLKEAFGFQEDDGLPEVVR-LTDEEAASGVFNLTDILLTVPGPD 516
Query: 352 SRVIYPMNDVAEVYH--HLAEKDGINLTESLHNVKEFSITSM--TGNYRRVFQKPMDFEW 407
+++YP VAE +LA + + L + + ++ G YR + +P F
Sbjct: 517 EQLLYP--SVAECCRESYLARLAALG-AQGLLTTENTLVKTLHYHGTYRPLVVQPQKFSI 573
Query: 408 ELLTYIDGNKPLAETDLDKIA 428
+ +P+ +TDL+ ++
Sbjct: 574 RSCCTAEATEPILQTDLEALS 594
>gi|27369583|ref|NP_766025.1| pseudouridylate synthase 7 homolog-like protein [Mus musculus]
gi|81900049|sp|Q8CE46.1|PUS7L_MOUSE RecName: Full=Pseudouridylate synthase 7 homolog-like protein
gi|26324994|dbj|BAC26251.1| unnamed protein product [Mus musculus]
Length = 702
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 129/414 (31%), Positives = 206/414 (49%), Gaps = 64/414 (15%)
Query: 18 SRGSENWPE--QLGK--FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVS 73
+RG + PE + GK + F L KEN +T EA+GL++ LG++P F +AG KDKR+++
Sbjct: 285 ARGKRSHPEGCERGKAVYTAFTLQKENLETFEAIGLLAVKLGVIPSDFSYAGLKDKRAIT 344
Query: 74 TQRVTVFKQRASKLAALNKRLIGIRLGDFCY--VKEGLLLGQLLGNRFTIT---LRGVVV 128
Q + V K +L ++ + + R+ F V + L LGQL GN F I LR +
Sbjct: 345 YQSMVVKKVTPERLKSIKEEIEKKRMNVFNIRSVGDCLRLGQLKGNHFEIIIRHLRNQLN 404
Query: 129 DS----EDVIKASANSLGRNGFINYFGLQRFGSGS-VPTHLVGATLLRGEWKSAVKMILD 183
DS E +++A N + GF+NY+G QRFG G + T +G LL+ E A+K+ L
Sbjct: 405 DSANLTERILEAIEN-VKNKGFVNYYGPQRFGKGQKIQTDQIGLALLKNEMVKAIKLFLT 463
Query: 184 PREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKK---CPGNYLQALKAI 240
P + + + ++KA++Y+ T+D GTL +P V ERA+L+ L + ++A +
Sbjct: 464 PEDVD-DPVNKAKQYFLRTEDAKGTLSLMPEFRVRERALLESLHRFGVTEEGCVRAWFSF 522
Query: 241 PRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYE 300
P ++R+ Y+H+Y S +WN AAS R+ +G + VV GDL+ C +D +K
Sbjct: 523 PHSMRIFYIHAYSSRIWNEAASYRLAAYGPK-VVEGDLI-CSDEDADKHF---------- 570
Query: 301 SSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMND 360
P + V VT + ++ Y + VVLP+ G V YP N
Sbjct: 571 -------------------PSSK---VHLVTKEEESAHTYALHQVVLPVLGYNVQYPENQ 608
Query: 361 VAEVYHHLAEKDGINLTESLHNVKEFSITSM----TGNYRRVFQKPMDFEWELL 410
V Y +DG+ F + ++ G YR + + P + L+
Sbjct: 609 VGRWYQEALSRDGLQAC-------RFRVPALKLNVPGCYRHIVKHPRNVSHRLV 655
>gi|146104995|ref|XP_001469958.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|398025102|ref|XP_003865712.1| hypothetical protein, conserved [Leishmania donovani]
gi|134074328|emb|CAM73075.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|322503949|emb|CBZ39036.1| hypothetical protein, conserved [Leishmania donovani]
Length = 680
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 135/441 (30%), Positives = 207/441 (46%), Gaps = 53/441 (12%)
Query: 30 KFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAA 89
K+ F LYKEN D +AL +++ L + R F GTKDKR+V+ QRV V + +L
Sbjct: 217 KYHHFTLYKENTDNNQALRMLAHHLKLSSRQLQFCGTKDKRAVTLQRVAVRETTVERLMT 276
Query: 90 LNKRLIG----IRLGDFCYVKEGLLLGQLLGNRFTITLRGV---------------VVDS 130
+N R G I++ F K GL LG LGN F I LR + +
Sbjct: 277 INSRAFGAHNVIKVCGFTEEKHGLRLGDALGNHFRIVLRMFPAAPSAAEGETSVCHALTA 336
Query: 131 EDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERN 190
+D+ + + G INYFG QRFG+ SV T VG L+G + +++IL+ +
Sbjct: 337 QDLHEVE-RVVQEVGVINYFGPQRFGTTSVLTSDVGVQFLQGRLREGLRLILESKARMVP 395
Query: 191 EISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVH 250
E+ + E + +D + L+ P + ER IL+ L P +YL +L+A+ RT+ MMY H
Sbjct: 396 EMQRVVELFDASDYV-AALQAAPYYCYQERDILKHLSTNPNDYLGSLQALSRTMGMMYFH 454
Query: 251 SYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSH 310
S QS +WN AS+R+ G H VGDLV E Y+ A D+
Sbjct: 455 SVQSLVWNLLASSRLSDKGRAHAEVGDLVL---------------ESTYQERVAARDAQ- 498
Query: 311 LDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPG--SRVIYP--MNDVAEVYH 366
P + D + + +T+ D + ++ ++DV+LP+PG ++YP + Y
Sbjct: 499 ----PTPNFDDSKLPAARRLTSED-DCARFGLEDVLLPIPGPDQDLVYPSSFGCTRDDYD 553
Query: 367 HLAEKDGINLT--ESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDL 424
+ GI+ E+L +K F G YR + +P F T P+ ++D
Sbjct: 554 AVLAALGIDFASKEALALMKVF---HFHGTYRALGVRPKGFSLRAETVAGWRTPVLKSDW 610
Query: 425 DKIAKAKLVNIVKEEEAVCGN 445
+K A+ IV + GN
Sbjct: 611 EKHCDAE--GIVTPAVSSAGN 629
>gi|50728218|ref|XP_416038.1| PREDICTED: pseudouridylate synthase 7 homolog (S. cerevisiae)-like
[Gallus gallus]
Length = 667
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 125/435 (28%), Positives = 221/435 (50%), Gaps = 55/435 (12%)
Query: 11 RGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKR 70
RG + R ++ + + + F L KEN +T EA+ ++ LG+LP F ++G KDK+
Sbjct: 249 RGRSCSRKRSADGFQIKQDLYTAFTLQKENLETLEAISFLAAELGVLPSDFSYSGVKDKK 308
Query: 71 SVSTQRVTVFKQRASKLAALNKRL--IGIRLGDFCYVKEGLLLGQLLGNRFTITLRGV-- 126
+++ Q + V K +L + +L G+R+ + ++ L LGQL GN F I +R +
Sbjct: 309 AITYQLMVVKKVTPERLKEIESKLEKKGMRIHNIHSAQQHLRLGQLRGNHFDIVVRDLKH 368
Query: 127 -----VVDSEDVIKASANSLGRNGFINYFGLQRFGSG-SVPTHLVGATLLRGEWKSAVKM 180
VD ++ I + ++ GF+NY+G QRFG G +V T +G LL + AVK+
Sbjct: 369 HSHDSPVDLKERISEAMENIEAKGFVNYYGPQRFGQGQNVQTDQIGLALLNEKMVKAVKL 428
Query: 181 ILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALK-- 238
P + + + ++ A+ Y+ +T+D GTL LP V E+ +L+ L + N +K
Sbjct: 429 FFTPEDTD-DPVNNAKRYFLQTEDAKGTLTMLPEFKVREKMLLRALHRYGVNQEGCIKGW 487
Query: 239 -AIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEF 297
+IP ++R+ YVH+Y S +WN A S R++ +G++ VV GDLVF + +D
Sbjct: 488 LSIPHSVRIFYVHAYCSQIWNEATSYRLKTYGSK-VVEGDLVFSEEND------------ 534
Query: 298 EYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYP 357
E S ND V VTA + ++ KY++ VVLP+ G + YP
Sbjct: 535 ESLSLNDK---------------------VHVVTALEESASKYSMHQVVLPMVGHSIKYP 573
Query: 358 MNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNK 417
N V + Y KD + + + V + ++ G YR + + + + +++GN+
Sbjct: 574 SNKVGQWYRERLSKDELQMCK--FRVPPLQL-NIPGCYRHILKNVQNLSY----FLEGNE 626
Query: 418 PLAETDLDKIAKAKL 432
++ + + + ++K+
Sbjct: 627 EGSKIEDNHLNESKV 641
>gi|401420888|ref|XP_003874933.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322491169|emb|CBZ26434.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 680
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 134/441 (30%), Positives = 209/441 (47%), Gaps = 53/441 (12%)
Query: 30 KFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAA 89
++ F LYKEN D+ +AL +++ L + R F GTKDKR+V+ QRV V + +L
Sbjct: 217 RYHHFTLYKENTDSNQALRMLAHHLKLSSRQLQFCGTKDKRAVTLQRVAVRETTVERLKT 276
Query: 90 LNKRLIG----IRLGDFCYVKEGLLLGQLLGNRFTITLRGV---------------VVDS 130
+N R G I++ F K GL LG LGN+F I LR V+ +
Sbjct: 277 INSRTFGAHNVIKVCSFTEEKHGLRLGDALGNQFRIALRMFSAAPSAAESETSVCHVLTA 336
Query: 131 EDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERN 190
+D+ + + G INYFG QRFG+ S+ T VG L+G + +++IL+ +
Sbjct: 337 QDLHEVE-RVVQEVGVINYFGPQRFGTTSILTSDVGIQFLQGRLREGLRLILESKAHMVP 395
Query: 191 EISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVH 250
E+ + E + + D L+ +P + ER IL+ L P +YL +L+AI RT+ MMY H
Sbjct: 396 EMQRVVELF-DASDCAAALQAVPYYCYQERDILKHLSTNPNDYLGSLQAISRTMGMMYFH 454
Query: 251 SYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSH 310
S QS +WN AS+R+ H VGDLVF E Y+ + +
Sbjct: 455 SVQSLVWNLLASSRLSDKSRAHAEVGDLVF---------------ESTYQ-----ERVAD 494
Query: 311 LDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPG--SRVIYP--MNDVAEVYH 366
D P + + V+ +T+ D + ++DV+LP+PG ++YP + + Y
Sbjct: 495 RDARPTPNSDKSKLPAVRRLTSED-ECAHFGLEDVLLPVPGPDQDLVYPSSIGCTRDDYD 553
Query: 367 HLAEKDGINLT--ESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDL 424
+ GIN E+L +K F G YR + +P +F P+ ++D
Sbjct: 554 AVLAALGINFASKEALALMKVF---HFHGTYRALGVRPKEFSLRAEIVAGWRTPVLKSDW 610
Query: 425 DKIAKAKLVNIVKEEEAVCGN 445
+K A+ IV + GN
Sbjct: 611 EKHCDAE--GIVTPALSSAGN 629
>gi|145488117|ref|XP_001430063.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124397158|emb|CAK62665.1| unnamed protein product [Paramecium tetraurelia]
Length = 627
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 113/401 (28%), Positives = 200/401 (49%), Gaps = 29/401 (7%)
Query: 30 KFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAA 89
KF++F L K N D+ A ISK LG+ + F AGTKDKR ++TQ T+ +L
Sbjct: 197 KFVKFLLMKRNIDSINAGMFISKQLGLSNKHFAIAGTKDKRGITTQWATLQGMEIGQLIE 256
Query: 90 LNKRLI---GIRLGDFCYVKEGLLLGQLLGNRFTITLR---GVVVDSEDVIKASANSLGR 143
+ +R I + D+ Y G+ LG L GN+F +TLR + + + + + +L
Sbjct: 257 IQERKFWNSNILMSDYSYQDSGIRLGDLQGNKFCVTLRFLSELTQNQQWELAKNIENLKS 316
Query: 144 NGFINYFGLQRFGSGS-VPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKET 202
GF+NYFGLQRFGS S + TH +G +++ WK +++IL + E E + + ++
Sbjct: 317 YGFVNYFGLQRFGSKSKIKTHQIGKEIIKKNWKECIRLILLSSQQEDEE--RINQLFELD 374
Query: 203 DDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAAS 262
D + + P+ + ++ + L+ NY AL+++PR R +Y+H+YQS++WN AS
Sbjct: 375 DFVTMSTLINPKLRIDKQLVDSLLQNGVHNYFTALQSLPRNARELYLHAYQSYIWNRMAS 434
Query: 263 ARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDG 322
R+++ G + +VVGD+V D G + + +V E +
Sbjct: 435 MRIKQFGNK-IVVGDIVSATILDE----GVAE-----------EGEEIVQQVAEDEEQQK 478
Query: 323 RHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVA-EVYHHLAEKDGINLTESLH 381
+ V + N +YT D +VLP+ G ++ P +A + + +++ I +
Sbjct: 479 NQTISACVLVTEQNISQYTFDQIVLPIYGHKITIPEESIASSLLKEIFQEEQITKQDFED 538
Query: 382 NVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAET 422
+F I GN+R Q P + + +L Y + ++ + ++
Sbjct: 539 ASNKFFI---DGNFRYFVQIPTEVDHQLFKYQNKDQDVVDS 576
>gi|354500187|ref|XP_003512182.1| PREDICTED: pseudouridylate synthase 7 homolog-like protein
[Cricetulus griseus]
Length = 700
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 121/397 (30%), Positives = 201/397 (50%), Gaps = 60/397 (15%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
+ F L KEN + EA+G+++ LG++P F +AG KDK++++ Q + V K +L +
Sbjct: 303 YTAFTLQKENLEMFEAIGVLAIKLGVIPSDFSYAGLKDKKAITYQSMVVRKVTPQRLKNI 362
Query: 91 NKRLIGIRLGDFCY--VKEGLLLGQLLGNRFTITLRGV-------VVDSEDVIKASANSL 141
+ + R+ F V + L LGQL GN F I +R + SE +++A N +
Sbjct: 363 EEEIKKKRMNVFNIRSVGDSLRLGQLKGNHFEIVIRNLKNQTNDSASLSERILEAIEN-V 421
Query: 142 GRNGFINYFGLQRFGSG-SVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYK 200
GF+NY+G QRFG G + T +G LL+ E A+K+ L P + + + ++KA+EY+
Sbjct: 422 KSKGFVNYYGPQRFGKGRKIQTDQIGLALLKNEMVKAIKLFLTPEDVD-DPVNKAKEYFL 480
Query: 201 ETDDIDGTLRKLPRHLVAERAILQCLKK---CPGNYLQALKAIPRTLRMMYVHSYQSFLW 257
+T+D GTL +P V ERA+L+ L + +QA + P ++R+ YVH+Y S +W
Sbjct: 481 QTEDAKGTLSLMPEFRVRERALLESLHRFGMTEEGCIQAWFSFPHSMRIFYVHAYSSKIW 540
Query: 258 NHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPET 317
N AAS R+ +G+ VV GDL+ C +D + E+ SS+
Sbjct: 541 NEAASYRLAAYGSR-VVEGDLI-CLDEDVD----------EHVSSSK------------- 575
Query: 318 DHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLT 377
V VT + ++ Y I VVLP+ G + YP N + + Y + +DG+
Sbjct: 576 ---------VHLVTKQEESARTYAIHQVVLPVLGYNIQYPDNKLGQWYQGVLSRDGLQAC 626
Query: 378 ESLHNVKEFSITSMT----GNYRRVFQKPMDFEWELL 410
F + ++ G YR + + P + ++L+
Sbjct: 627 -------RFRVPALKLNVPGCYRHILKYPHNVSYQLV 656
>gi|71748148|ref|XP_823129.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70832797|gb|EAN78301.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 685
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 142/447 (31%), Positives = 217/447 (48%), Gaps = 49/447 (10%)
Query: 5 SKKRKERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFA 64
+++ ER NP S+ KFL F LYKEN D+ AL ++ L + RS F+
Sbjct: 201 TRRADERRLNPVRSQ----------KFLHFTLYKENIDSNHALREVASYLHVPTRSLLFS 250
Query: 65 GTKDKRSVSTQRVTVFKQRASKLAALNKRLIG----IRLGDFCYVKEGLLLGQLLGNRFT 120
GTKDKR+V+ QRV V KL +N R G +++ F + GL LG +GN F
Sbjct: 251 GTKDKRAVTLQRVAVRGVSPEKLIGINSRSFGQDRKVKVCSFRTMDHGLRLGDAVGNHFL 310
Query: 121 ITLRGVVVDSEDVIKASAN----SLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKS 176
I LR ++ +S D+ + N ++ R G +NYFG QRFG+ V T VG LL G +++
Sbjct: 311 IALR-LLPESRDIDSDTLNTVESTINREGVVNYFGTQRFGTTDVLTGDVGIQLLSGHFEN 369
Query: 177 AVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQA 236
A++++ + + A + E + ++ +P + ER +L L P ++L +
Sbjct: 370 ALRLVFRSKSMVEPSMLAAVDAL-EKGSFEEAVKLVPHYCHQERDMLNHLVDSPNDFLGS 428
Query: 237 LKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPE 296
IPRT+ MMY H+ QS +WN AS R++ VGDLV K T + L C
Sbjct: 429 FSKIPRTMSMMYFHAVQSLIWNIMASKRLEVGVVPQ--VGDLVL-KSRYTAR-LRCNQQS 484
Query: 297 FEYE----SSNDADDSSHLDE--VPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLP 350
E S+N+ DD++ E +PE H +T D+ +G + I D++LP+P
Sbjct: 485 DCLEGLDLSANEMDDTTEEKERGLPEVVH----------LTTEDVATGLFQIADILLPVP 534
Query: 351 G--SRVIYPM---NDVAEVYHHLAEKDGINLTESLHN-VKEFSITSMTGNYRRVFQKPMD 404
G ++ YP D + LA K +L + + VK F G YR + KP
Sbjct: 535 GPDEKLQYPTVSACDRSAYIETLALKGAESLVRASNPLVKLF---HYHGAYRHLVVKPRG 591
Query: 405 FEWELLTYIDGNKPLAETDLDKIAKAK 431
F L +P+ TDL+ + +K
Sbjct: 592 FRMRLCNTKSLREPIIPTDLELLTGSK 618
>gi|261333019|emb|CBH16014.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
DAL972]
Length = 685
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 142/447 (31%), Positives = 217/447 (48%), Gaps = 49/447 (10%)
Query: 5 SKKRKERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFA 64
+++ ER NP S+ KFL F LYKEN D+ AL ++ L + RS F+
Sbjct: 201 TRRADERRLNPVRSQ----------KFLHFTLYKENIDSNHALREVASYLHVPTRSLLFS 250
Query: 65 GTKDKRSVSTQRVTVFKQRASKLAALNKRLIG----IRLGDFCYVKEGLLLGQLLGNRFT 120
GTKDKR+V+ QRV V KL +N R G +++ F + GL LG +GN F
Sbjct: 251 GTKDKRAVTLQRVAVRGVSPEKLIGINSRSFGQDRKVKVCSFRTMDHGLRLGDAVGNHFL 310
Query: 121 ITLRGVVVDSEDVIKASAN----SLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKS 176
I LR ++ +S D+ + N ++ R G +NYFG QRFG+ V T VG LL G +++
Sbjct: 311 IALR-LLPESRDIDSDTLNTVESTINREGVVNYFGTQRFGTTDVLTGDVGIQLLSGHFEN 369
Query: 177 AVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQA 236
A++++ + + A + E + ++ +P + ER +L L P ++L +
Sbjct: 370 ALRLVFRSKSMVEPSMLAAVDAL-EKGSFEEAVKLVPHYCHQERDMLNHLVDSPNDFLGS 428
Query: 237 LKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPE 296
IPRT+ MMY H+ QS +WN AS R++ VGDLV K T + L C
Sbjct: 429 FSKIPRTMSMMYFHAVQSLIWNIMASKRLEVGVVPQ--VGDLVL-KSRYTAR-LRCNQQS 484
Query: 297 FEYE----SSNDADDSSHLDE--VPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLP 350
E S+N+ DD++ E +PE H +T D+ +G + I D++LP+P
Sbjct: 485 DCLEGLDLSANEMDDTTEEKERGLPEVVH----------LTTEDVATGLFQIADILLPVP 534
Query: 351 G--SRVIYPM---NDVAEVYHHLAEKDGINLTESLHN-VKEFSITSMTGNYRRVFQKPMD 404
G ++ YP D + LA K +L + + VK F G YR + KP
Sbjct: 535 GPDEQLQYPTVSACDRSAYIETLALKGAESLVRASNPLVKLF---HYHGAYRHLVVKPRG 591
Query: 405 FEWELLTYIDGNKPLAETDLDKIAKAK 431
F L +P+ TDL+ + +K
Sbjct: 592 FRMRLCNTKSLREPIIPTDLELLTGSK 618
>gi|157877715|ref|XP_001687162.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|68130237|emb|CAJ09549.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 680
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 133/428 (31%), Positives = 201/428 (46%), Gaps = 51/428 (11%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
N PE K+ F LYKEN D +AL +++ L + R F GTKDKR+V+ QRV V
Sbjct: 212 NRPEP--KYHHFTLYKENTDNNQALRMLAHHLKVSSRQLQFCGTKDKRAVTLQRVAVRGT 269
Query: 83 RASKLAALNKRLIG----IRLGDFCYVKEGLLLGQLLGNRFTITLR-----GVVVDSEDV 133
+L +N R G I++ F K GL LG LGN F I LR + DSE
Sbjct: 270 TVERLMTINSRAFGAHNVIKVCGFTEEKHGLRLGDALGNHFRIVLRMFPAAPLAADSETS 329
Query: 134 IKASANS---------LGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDP 184
+ + + + G INYFG QRFG+ + T VG L+G + ++MIL+
Sbjct: 330 VCHALTAQDLHEVERVVQEVGVINYFGPQRFGTTCILTSDVGVQFLQGRLREGLRMILES 389
Query: 185 REGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTL 244
+ E+ + E + + D L+ P ER IL+ L P +YL +L+ I RT+
Sbjct: 390 KARMVPEMQRVVELF-DASDYAAALQTAPYFCYQERDILKHLSTNPTDYLGSLQTISRTM 448
Query: 245 RMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSND 304
MMY HS QS +WN AS+R+ G H VGDLV E Y+
Sbjct: 449 GMMYFHSVQSLVWNLLASSRLSDKGRAHAEVGDLVL---------------ESTYQ---- 489
Query: 305 ADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPG--SRVIYP--MND 360
+ + D P + + + + +T+ D + ++ ++DV+LP+PG ++YP +
Sbjct: 490 -ERVAFRDAQPTPNSDNTKLPATRRLTSED-DCARFGLEDVLLPVPGPDQDLVYPSSIGC 547
Query: 361 VAEVYHHLAEKDGINLT--ESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKP 418
+ Y + GI+ E+L +K F G YR + +P DF T P
Sbjct: 548 TRDDYDAVLAALGIDFASKEALALMKVF---HFHGTYRALGVRPKDFSLRAETVDGWRTP 604
Query: 419 LAETDLDK 426
+ ++D +K
Sbjct: 605 VLKSDWEK 612
>gi|45219726|gb|AAH66798.1| Pseudouridylate synthase 7 homolog (S. cerevisiae)-like [Mus
musculus]
Length = 702
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 128/414 (30%), Positives = 206/414 (49%), Gaps = 64/414 (15%)
Query: 18 SRGSENWPE--QLGK--FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVS 73
+RG + PE + GK + F L KEN +T EA+GL++ LG++P F +AG KDKR+++
Sbjct: 285 ARGKRSHPEGCERGKAVYTAFTLQKENLETFEAIGLLAVKLGVIPSDFSYAGLKDKRAIT 344
Query: 74 TQRVTVFKQRASKLAALNKRLIGIRLGDFCY--VKEGLLLGQLLGNRFTIT---LRGVVV 128
Q + V K +L ++ + + R+ F V + L LGQL GN F I LR +
Sbjct: 345 YQSMVVKKVTPERLKSIKEEIEKKRMNVFNIRSVGDCLRLGQLKGNHFEIIIRHLRNQLN 404
Query: 129 DS----EDVIKASANSLGRNGFINYFGLQRFGSGS-VPTHLVGATLLRGEWKSAVKMILD 183
DS E +++A N + GF+NY+G QRFG G + T +G LL+ E A+K+ L
Sbjct: 405 DSANLTERILEAIEN-VKNKGFVNYYGPQRFGKGQKIQTDQIGLALLKNEMVKAIKLFLT 463
Query: 184 PREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKK---CPGNYLQALKAI 240
P + + + ++KA++Y+ T+D GTL +P V ERA+L+ L + ++A +
Sbjct: 464 PEDVD-DPVNKAKQYFLRTEDAKGTLSLMPEFRVRERALLESLHRFGVTEEGCVRAWFSF 522
Query: 241 PRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYE 300
P ++R+ Y+H+Y S +WN AAS R+ +G + VV G+L+ C +D +K
Sbjct: 523 PHSMRIFYIHAYSSRIWNEAASYRLAAYGPK-VVEGNLI-CSDEDADKHF---------- 570
Query: 301 SSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMND 360
P + V VT + ++ Y + VVLP+ G V YP N
Sbjct: 571 -------------------PSSK---VHLVTKEEESAHTYALHQVVLPVLGYNVQYPENQ 608
Query: 361 VAEVYHHLAEKDGINLTESLHNVKEFSITSM----TGNYRRVFQKPMDFEWELL 410
V Y +DG+ F + ++ G YR + + P + L+
Sbjct: 609 VGRWYQEALSRDGLQAC-------RFRVPALKLNVPGCYRHIVKHPRNVSHRLV 655
>gi|403222562|dbj|BAM40694.1| uncharacterized protein TOT_020000948 [Theileria orientalis strain
Shintoku]
Length = 776
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 156/536 (29%), Positives = 244/536 (45%), Gaps = 115/536 (21%)
Query: 25 PEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFK-QR 83
P+ GKFL F++ K N++T E + ++ K F AG KDKR ++ QR+ + +
Sbjct: 307 PKSYGKFLHFNMLKINRETSEVVHMMCKSANRGSFDFFSAGNKDKRGITVQRICIRRCNI 366
Query: 84 ASKLAALNKRLIG-IRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDV--IKASANS 140
S L A+ + + L DFCY + LG L GN F I +RG+ ED I + +
Sbjct: 367 ESILEAMTRGWYNDVHLSDFCYKNTKIGLGDLKGNHFKIVIRGI----EDATNIDEAIET 422
Query: 141 LGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWK------------------------- 175
L GFINYFGLQRFG+ V TH++GA+++ +
Sbjct: 423 LKSYGFINYFGLQRFGTKIVGTHIIGASIIDQRYDMTLRLILGDIETAKHYAVFNKYFEN 482
Query: 176 -SAVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYL 234
AVK+ L+P + KA +YY +D + L+ +P E+++L+ + N
Sbjct: 483 MDAVKLSLNPEYEMPMKYRKATDYYLFDNDAETALKYIPMRFYVEKSVLKGIMANMSNE- 541
Query: 235 QALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVN 294
+ L+ +P+ + +YVHS QS L+N AA+ R+ ++G + VV GDLV +EK +
Sbjct: 542 KCLEKVPKNILSIYVHSTQSLLFNLAATERLNRYGLK-VVPGDLVVT----SEKGM---- 592
Query: 295 PEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINS----GKYTIDDVVLPLP 350
++ + R VK +T ++NS +YTI+ VVLPLP
Sbjct: 593 ------------------SESGEEYEEERTQRVKRMTVIEVNSEEEAERYTIEQVVLPLP 634
Query: 351 GSRVIYPMNDVAEVYHHLA-EKDGINL-----TESLHNVKEFSITSMTGNYRRVFQKPMD 404
G + YP N + + Y +A E I L + + K+ I S+ G+YR + KP D
Sbjct: 635 GDNIKYPSN-MKDYYEQIAVENYNIKLENFKTNKEVEGKKQKCIVSVGGSYRFIIVKPKD 693
Query: 405 FEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDI 464
+E++ ++ +PL V I E E + EK S + S+ +
Sbjct: 694 VSYEVIEKLE--EPLK------------VLIRPEIEGYEEDIEKYES-----ARSIERIQ 734
Query: 465 KLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLK 520
KL D + ALKL +LP S Y T+A+RE+LK
Sbjct: 735 KL-----------------------GDKIRNKAALKLKCSLPKSSYITVALREILK 767
>gi|224093668|ref|XP_002194165.1| PREDICTED: pseudouridylate synthase 7 homolog-like protein
[Taeniopygia guttata]
Length = 695
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 123/396 (31%), Positives = 197/396 (49%), Gaps = 60/396 (15%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
+ F L KEN +T EA+GL++ L +LP F + G KDK++++ Q + V K +L +
Sbjct: 298 YTAFTLQKENLETLEAIGLLAVELDVLPSDFSYTGIKDKKAITLQPMVVKKVTPERLKEI 357
Query: 91 NKRL--IGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDV-------IKASANSL 141
++ G+++ + + L LGQL GN F I +R + S D I + S+
Sbjct: 358 GNKMEKKGMKIYNIRPAYQHLRLGQLKGNHFDIVVRDLQHHSHDTSADLKERISEAVESV 417
Query: 142 GRNGFINYFGLQRFGSGS-VPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYK 200
GF+NY+G QRFG G V T +G LL + AVK+ P + + + ++ A+ Y+
Sbjct: 418 ETKGFVNYYGPQRFGQGQIVQTDQIGLALLNEKMVKAVKLFFTPEDTD-DPVNNAKRYFL 476
Query: 201 ETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKA---IPRTLRMMYVHSYQSFLW 257
+T+D GTL LP V E+ +L+ L + N+ K IP +LR+ YVH+Y S +W
Sbjct: 477 QTEDAKGTLVMLPEFKVREKMLLRALNRYGVNHEGCTKGWLNIPHSLRIFYVHAYCSKIW 536
Query: 258 NHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPET 317
N AAS R++ +G++ VV GDLV + D+S L++
Sbjct: 537 NEAASYRLKTYGSK-VVEGDLVL----------------------EEIDESISLNDK--- 570
Query: 318 DHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLT 377
V VTA++ ++ KY+I VVLP+ G + YP N V + YH KD + L
Sbjct: 571 ---------VHVVTASEESANKYSIYQVVLPMVGHSIKYPSNKVGQWYHERLSKDELELC 621
Query: 378 ESLHNVKEFSITSMT----GNYRRVFQKPMDFEWEL 409
+F ++S+ G YR + + + + L
Sbjct: 622 -------KFRVSSLQLNIPGCYRLILKNVQNLSYFL 650
>gi|406694441|gb|EKC97768.1| pseudouridine synthase [Trichosporon asahii var. asahii CBS 8904]
Length = 1323
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 125/388 (32%), Positives = 191/388 (49%), Gaps = 73/388 (18%)
Query: 59 RSFGFAGTKDKRSVSTQRVTVFK------------------QRASKLAALNKRLIGIRLG 100
R GTKDKR+++ QRV++ + +R A + G R+G
Sbjct: 312 RDRKLCGTKDKRAITVQRVSLKRGSLTTQQVWRAVNGVRSGRRTEDGAVAERGERGTRIG 371
Query: 101 DFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSV 160
D Y L LG L GN V ED+ KA S+ GFIN++G+QRFG+ +V
Sbjct: 372 DMEYSTHPLELGSLKGNH------NVQAAVEDIDKA-MKSIRDKGFINFYGMQRFGTSTV 424
Query: 161 PTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAER 220
PTH+ G LL+G+W A+ IL REGE + ++ R + E D + L +PR VAER
Sbjct: 425 PTHVTGLLLLQGKWGEAIDSILSLREGEHPDCTRGRLAWLEDGDFNRALELMPRRSVAER 484
Query: 221 AILQCLKKCPGNYLQ-ALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLV 279
+I + +K GN L+ + A+ S++WN A+ R+ K + + GDLV
Sbjct: 485 SIWEHWRK--GNRLEDKVGAL-----------GNSYIWNLMAAERM-KLSNDKPLEGDLV 530
Query: 280 FCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGK 339
+E+++ +D D+ ET D VK +T+AD+ G+
Sbjct: 531 -----------------YEHDAGDDDADNK------ETSSRD-----VKRLTSADL--GQ 560
Query: 340 YTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVF 399
YT+ DV+LPLPG + YP + ++Y DG++ + +E+ S+ G+YRR+
Sbjct: 561 YTLADVILPLPGWNIEYPGGRIGQLYKDALLADGLDPLRLRRDQREY---SLPGSYRRLI 617
Query: 400 QKPMDFEWELLTYIDGNKPLAETDLDKI 427
+KP D WE + Y D PLA+ D D+I
Sbjct: 618 RKPTDVSWEHIRYTDPTLPLAQADEDRI 645
>gi|109482785|ref|XP_001058268.1| PREDICTED: pseudouridylate synthase 7 homolog-like protein-like
[Rattus norvegicus]
gi|392349687|ref|XP_002729893.2| PREDICTED: pseudouridylate synthase 7 homolog-like protein-like
[Rattus norvegicus]
Length = 709
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 122/397 (30%), Positives = 195/397 (49%), Gaps = 60/397 (15%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
+ F L KEN + EA+G ++ LG++P F +AG KDK++++ Q + V K +L +
Sbjct: 311 YTAFTLQKENLEMFEAIGFLAIQLGVIPSDFSYAGLKDKKAITYQSMVVRKVTPERLKTI 370
Query: 91 NKRLIGIRLGDFCY--VKEGLLLGQLLGNRFTITLRGVVVDSED-------VIKASANSL 141
+ + R+ F V + L LGQL GN F I +R + D V++A N +
Sbjct: 371 EEEIKKKRMNVFNVRSVDDSLRLGQLKGNHFEIIIRNLRNQPNDSANLRERVLEAIEN-V 429
Query: 142 GRNGFINYFGLQRFGSGS-VPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYK 200
GF+NY+G QRFG G + T +G LL+ E A+K+ L P + + + ++KA++Y+
Sbjct: 430 KNKGFVNYYGPQRFGKGKKIQTDRIGLALLKNEMVKAIKLFLTPEDAD-DPVNKAKKYFL 488
Query: 201 ETDDIDGTLRKLPRHLVAERAILQCLKK---CPGNYLQALKAIPRTLRMMYVHSYQSFLW 257
+T+D GTL +P V ERA+L+ L + +QA + P ++R+ Y+H+Y S +W
Sbjct: 489 QTEDAKGTLSLMPEFRVRERALLESLHRFGVTEEGCVQAWFSFPHSMRIFYIHAYSSRIW 548
Query: 258 NHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPET 317
N AAS R+ +G + VV GDLV C+ D D HL
Sbjct: 549 NEAASYRLAAYGPK-VVKGDLV------------CL----------DEDADEHL------ 579
Query: 318 DHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLT 377
P + V VT + ++ Y + VVLP+ G V YP N V Y + +DG+
Sbjct: 580 --PSSK---VHLVTEEEESADTYALHQVVLPVLGYNVQYPENKVGRWYQGVLGRDGLQAC 634
Query: 378 ESLHNVKEFSITSM----TGNYRRVFQKPMDFEWELL 410
F + ++ G YR + + P + L+
Sbjct: 635 -------RFRVPALKLNVPGCYRHIVKHPHNVSHRLV 664
>gi|401884883|gb|EJT49021.1| pseudouridine synthase [Trichosporon asahii var. asahii CBS 2479]
Length = 1220
Score = 174 bits (442), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 125/388 (32%), Positives = 190/388 (48%), Gaps = 73/388 (18%)
Query: 59 RSFGFAGTKDKRSVSTQRVTVFK------------------QRASKLAALNKRLIGIRLG 100
R GTKDKR+++ QRV++ + +R A + G R+G
Sbjct: 312 RDRKLCGTKDKRAITVQRVSLKRGSLTTQQVWRAVNGVRSGRRTEDGAVAERGERGTRIG 371
Query: 101 DFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSV 160
D Y L LG L GN V ED+ KA S+ GFIN++G+QRFG+ +V
Sbjct: 372 DMEYSTHPLELGSLKGNH------NVQAAVEDIDKA-MKSIRDKGFINFYGMQRFGTSTV 424
Query: 161 PTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAER 220
PTH+ G LL+G+W A+ IL REGE + ++ R + E D L +PR VAER
Sbjct: 425 PTHVTGLLLLQGKWGEAIDSILSLREGEHPDCTRGRLAWLEDGDFSRALELMPRRSVAER 484
Query: 221 AILQCLKKCPGNYLQ-ALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLV 279
+I + +K GN L+ + A+ S++WN A+ R+ K + + GDLV
Sbjct: 485 SIWEHWRK--GNRLEDKVGAL-----------GNSYIWNLMAAERM-KLSNDQPLEGDLV 530
Query: 280 FCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGK 339
+E+++ +D D+ ET D VK +T+AD+ G+
Sbjct: 531 -----------------YEHDAGDDDADNK------ETSSRD-----VKRLTSADL--GQ 560
Query: 340 YTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVF 399
YT+ DV+LPLPG + YP + ++Y DG++ + +E+ S+ G+YRR+
Sbjct: 561 YTLADVILPLPGWNIEYPGGRIGQLYKDALLADGLDPLRLRRDQREY---SLPGSYRRLI 617
Query: 400 QKPMDFEWELLTYIDGNKPLAETDLDKI 427
+KP D WE + Y D PLA+ D D+I
Sbjct: 618 RKPTDVSWEHIRYTDPTLPLAQADEDRI 645
>gi|66358390|ref|XP_626373.1| hypothetical protein [Cryptosporidium parvum Iowa II]
gi|46227899|gb|EAK88819.1| conserved hypothetical protein [Cryptosporidium parvum Iowa II]
Length = 805
Score = 174 bits (442), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 146/539 (27%), Positives = 236/539 (43%), Gaps = 98/539 (18%)
Query: 20 GSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTV 79
+E W + ++ F +YKEN+DT +A+ +ISK L +SFG AG KD+R ++ QR +
Sbjct: 329 SNERWDPNIPDYIHFTIYKENRDTADAINMISKCLKRNHKSFGIAGLKDRRGITVQRASA 388
Query: 80 FKQRASKL---AALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKA 136
++ +L A IR+ DF Y E + +G L GN F + +R + + ++ K
Sbjct: 389 YRVLEDQLIYSTASKNWDRNIRISDFKYGNEQINIGDLNGNLFHVIIRDLEILDTNIQKE 448
Query: 137 SAN-------------SLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILD 183
S N + +GFINYFGLQRFG+ +PT+ +G +LL+ EWK A +IL
Sbjct: 449 SGNEKLTLKMVDKLIGDVKSSGFINYFGLQRFGTSEIPTYKIGISLLKKEWKKAFYLILG 508
Query: 184 PREGERNEIS-KAREYYKE--TDDIDGTLRKLPRHLVAERAILQCLKKCPGN-------- 232
E + S + R++Y + +D + + L H E+ +L K
Sbjct: 509 FDEEKMISYSTEKRKFYDQIINEDFEEYQKSLSNHSYLEKLLLNGFIKEKKKIKSSTKCK 568
Query: 233 -----YLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTE 287
Y +++ +P+ +Y+HS QS +N AS R++K G + V+GDLV
Sbjct: 569 AKEDIYRESINLLPKNSYSLYIHSLQSLFFNIVASERIKKFG-RNPVIGDLVIV------ 621
Query: 288 KELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVL 347
P + SN +DS+ N++ V + + K+TI DVVL
Sbjct: 622 -------PNLN-KYSNKNEDSAF-----------SEKNVI--VLESQLELAKFTIQDVVL 660
Query: 348 PLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEW 407
LPG V YP + E Y L + E + + + + G YR++ P
Sbjct: 661 TLPGDNVAYPP-IMREKYEEL-------MMEFMGTSIQENCMGINGTYRKILVVP----- 707
Query: 408 ELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLS 467
+ + Y+ N D +K +K++ + + L+ +L+
Sbjct: 708 DYINYVGLNISEKRNDTNKFPDSKVI--------------------LSDLDILTIHPELT 747
Query: 468 TENNEAACAKEVKQPHVESV-CGADSQGKQM-ALKLGLTLPSSCYATMAIRELLKTSTS 524
E + + P V S C + Q+ L LP S Y TMA+RE L S S
Sbjct: 748 Q---ELGTKEPILSPEVMSYKCDDKDENSQVNTLVFSCMLPKSSYVTMALREFLGNSPS 803
>gi|395841545|ref|XP_003793595.1| PREDICTED: pseudouridylate synthase 7 homolog-like protein
[Otolemur garnettii]
Length = 721
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 125/397 (31%), Positives = 201/397 (50%), Gaps = 51/397 (12%)
Query: 26 EQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRAS 85
E+ ++ F L KEN + EA+G ++ LG++P F +AG KDK++++ Q + V K
Sbjct: 317 ERKDRYTAFTLQKENLEMFEAIGFLAVKLGVIPSDFSYAGLKDKKAITYQAMVVRKVTPE 376
Query: 86 KLAALNKRLIGIRLGDFCY--VKEGLLLGQLLGNRFTITLRGV---VVDS----EDVIKA 136
+L + K L R+ F V L LGQL GN F I +R + + DS E +++A
Sbjct: 377 RLKNIAKDLEKKRMSVFNIRSVDNSLRLGQLKGNHFDIVIRNLKNQINDSANLRERILEA 436
Query: 137 SANSLGRNGFINYFGLQRFGSG-SVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKA 195
N + GF+NY+G QRFG G V T +G LL+ E A+K+ L P + + + +++A
Sbjct: 437 IEN-VKNKGFVNYYGPQRFGKGKKVHTDQIGLALLKSEMVKAIKLFLTPEDLD-DPVNRA 494
Query: 196 REYYKETDDIDGTLRKLPRHLVAERAILQCLKK---CPGNYLQALKAIPRTLRMMYVHSY 252
++++ +T+D TL +P V ERA+L+ L + +QA + P ++R+ Y+H+Y
Sbjct: 495 KKHFLQTEDAKSTLLLMPEFKVRERALLESLHRFGLTEEGCVQAWFSFPHSMRIFYIHAY 554
Query: 253 QSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLD 312
S +WN AAS R+ +G+ VV GDLV C LD
Sbjct: 555 SSRIWNEAASYRLATYGSR-VVQGDLV-C-----------------------------LD 583
Query: 313 EVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKD 372
E+ TD ++ V VT + + Y I VVLP+ G + YP N V + Y +D
Sbjct: 584 EL--TDDEQLPNSKVHLVTEEEEAANTYAIRQVVLPVLGYNIQYPKNKVGQWYLEALSRD 641
Query: 373 GINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWEL 409
G L V + ++ G YR++ + P + ++L
Sbjct: 642 G--LATCKFKVPTLKL-NVPGCYRQILKHPYNLSYQL 675
>gi|342184525|emb|CCC94007.1| conserved hypothetical protein [Trypanosoma congolense IL3000]
Length = 682
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 135/440 (30%), Positives = 213/440 (48%), Gaps = 42/440 (9%)
Query: 4 NSKKRKERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGF 63
++K+ ER NP + +FL F LYKEN D AL ++ + RS F
Sbjct: 188 STKRADERRLNPLSKQ----------RFLHFTLYKENMDGNLALREVASYIKTPLRSILF 237
Query: 64 AGTKDKRSVSTQRVTVFKQRASKLAALNKRLIG----IRLGDFCYVKEGLLLGQLLGNRF 119
+GTKDKR+V+ QRV V +L+ LN R G +++ F + GL LG +GN+F
Sbjct: 238 SGTKDKRAVTLQRVAVRGLSPDRLSGLNNRSFGMGRKLKVCGFKMMDIGLRLGDAVGNQF 297
Query: 120 TITLRGVVVDSE---DVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKS 176
+ LR + D E D ++ + + R G +NYFG QRFG+ V T VG LL G ++
Sbjct: 298 LVVLRLMPGDEEIGADALRVVEDIVRREGVVNYFGTQRFGTTEVLTSDVGIELLSGNFEQ 357
Query: 177 AVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQA 236
A++++ + ++ +E E + L+ +P + ER +L+ L + P ++L +
Sbjct: 358 ALQLVFRSKSFVEPKMIPVKEAV-ERGSFEEALKLVPYYCFQERDMLEHLVRFPNDFLGS 416
Query: 237 LKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPE 296
I RT+ MMY H+ QS +WN AS R+ VGDLV K T+ L C+
Sbjct: 417 FSRISRTMAMMYFHAVQSLIWNQMASKRLAFSLEPQ--VGDLVL-KCVHTQL-LKCLREL 472
Query: 297 FEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPG--SRV 354
+E + D+ E H D V ++ D+ SG + + V+L +PG +
Sbjct: 473 GSFEEVDHLMDN-------EMQHKDEGLPEVVQLSDEDLASGIFRLHHVLLTVPGPDEHL 525
Query: 355 IYPMNDVAE------VYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWE 408
+YP +V H +D +N + SL VK F G YRR+ +P DF+
Sbjct: 526 LYPGVEVCNRKAYIATLHETGAEDLMNGSNSL--VKSFHF---HGAYRRLVVRPKDFKMR 580
Query: 409 LLTYIDGNKPLAETDLDKIA 428
L ++P+ TDL+ ++
Sbjct: 581 LHGPTVVDEPIVPTDLEVLS 600
>gi|321469713|gb|EFX80692.1| hypothetical protein DAPPUDRAFT_303951 [Daphnia pulex]
Length = 742
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 137/462 (29%), Positives = 218/462 (47%), Gaps = 62/462 (13%)
Query: 4 NSKKRKERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEA---LGLISKMLGILPRS 60
N +++KER + +N + + F LY EN++T +A L I+K I
Sbjct: 81 NPEQKKERLS--VRRKSQDNAVPHVSSYTEFVLYMENQETVDANFVLAKIAKKNKIHSPE 138
Query: 61 FGFA-GTKDKRSVSTQRVTVFKQ-RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNR 118
F A T +K ++++Q VT K +K+ K + G+F + + + G L GNR
Sbjct: 139 FMTACSTHEKGTITSQLVTANKNLDPTKMKCDLKSESKLAFGNFTFTDKPVQQGSLKGNR 198
Query: 119 FTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAV 178
F I LR V D I ++ S+ GFINY+G + FG+ TH++G LL +WK A+
Sbjct: 199 FVIALRNVNGDKIQ-IDSNLKSVKEYGFINYYGTECFGTR---THIIGKQLLLNQWKEAI 254
Query: 179 KMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALK 238
+I E+ K E++ E +L ++ G+ + AL
Sbjct: 255 DLIA--------EVFKGHEHFHSM----------------ETQLLSYMENHGGDLVGALN 290
Query: 239 AIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFE 298
IP +R+ Y+H+YQSF+WN S R+ + G + ++GDLV+ + D +E+
Sbjct: 291 TIPFEIRLSYIHAYQSFIWNSIVSKRIAEFGVK-PILGDLVYARSVDELQEM-------- 341
Query: 299 YESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSG-KYTIDDVVLPLPGSRVIYP 357
++ S+ E +P T+ + D N+ YTI DVVLPLPG V YP
Sbjct: 342 ------DNNDSNSSNQSECSNP--------TIVSIDKNNILNYTIGDVVLPLPGYDVTYP 387
Query: 358 MNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNK 417
N+VA+ Y L DG++ + + K S++G YR + KP DF W L Y + +
Sbjct: 388 DNEVADWYKDLLLADGLSEVDFERSAKNH---SLSGAYRHLILKPTDFNWRFLWYSNPTE 444
Query: 418 PLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSES 459
L +DLD++ K + ++ EE K S +KQ S
Sbjct: 445 RLILSDLDRLEKTQFLHTAVTEEQTDQEKRITRSGQLKQKNS 486
>gi|326911441|ref|XP_003202067.1| PREDICTED: pseudouridylate synthase 7 homolog-like protein-like
[Meleagris gallopavo]
Length = 568
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 125/420 (29%), Positives = 207/420 (49%), Gaps = 51/420 (12%)
Query: 11 RGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKR 70
RG + R ++ + + + F L KEN +T EA+ ++ LG+LP F + G KDK+
Sbjct: 150 RGRSCSRKRSADGFQIKQDLYTAFTLQKENLETLEAINFLAAELGVLPSDFSYTGIKDKK 209
Query: 71 SVSTQRVTVFKQRASKLAALNKRL--IGIRLGDFCYVKEGLLLGQLLGNRFTITLRGV-- 126
+++ Q + V K +L + +L G+R+ + + L LGQL GN F I +R +
Sbjct: 210 AITYQLMVVKKVTPQRLKDIESKLEKKGMRIHNIHSAHQHLRLGQLKGNHFDIVVRDLKH 269
Query: 127 -----VVDSEDVIKASANSLGRNGFINYFGLQRFGSG-SVPTHLVGATLLRGEWKSAVKM 180
VD ++ I + ++ GF+NY+G QRFG G +V T +G LL + AVK+
Sbjct: 270 HNHDSPVDLKERISEAMENIEAKGFVNYYGPQRFGQGQNVQTDQIGLALLNEKMVKAVKL 329
Query: 181 ILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALK-- 238
+ + + ++ A+ Y+ +T+D GTL LP V E+ +L+ L + N K
Sbjct: 330 FFTAEDTD-DPVNNAKRYFLQTEDAKGTLSMLPEFKVREKMVLRALHRYGVNQEGCTKGW 388
Query: 239 -AIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEF 297
+IP ++R+ YVH+Y S +WN A S R++ +G++ VV GDLVF + +D
Sbjct: 389 LSIPHSMRIFYVHAYCSQIWNEATSYRLKTYGSK-VVEGDLVFSEEND------------ 435
Query: 298 EYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYP 357
E S ND V VTA + ++ KY+I VVLP+ G + YP
Sbjct: 436 ESLSLNDK---------------------VHVVTALEESANKYSIHQVVLPMVGHSIKYP 474
Query: 358 MNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNK 417
N V + Y KD + + + V + ++ G YR + + + + L +G+K
Sbjct: 475 SNKVGQWYRERLSKDELQMCK--FRVPPLQL-NVPGCYRHILKNVQNLSYFLEGSEEGSK 531
>gi|340500871|gb|EGR27709.1| pseudouridine synthase, putative [Ichthyophthirius multifiliis]
Length = 644
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 108/394 (27%), Positives = 205/394 (52%), Gaps = 42/394 (10%)
Query: 36 LYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTV---------FKQRASK 86
L+K +DT A+ I + L + R+ G AG KDKR ++TQ +++ FK R
Sbjct: 203 LFKTGQDTFNAIQNICRFLKVSTRNIGSAGLKDKRGITTQAISISMHNTNEEQFKSRIKN 262
Query: 87 LAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGF 146
N +L I+ V + + +G L GN+F++ +R + EDV + +L + GF
Sbjct: 263 AKWYNMKLQNIK-----EVIKPIKMGDLYGNQFSVAIRLIDFKEEDV-HINIQNLIKYGF 316
Query: 147 INYFGLQRFGSG-SVPTHLVGATLLRGEWKSAVKMILDPREGERNEISK-AREYYKETDD 204
INYFG+QRFG+ TH++G LL+ +W+ A ++I+ N++++ R++ ++
Sbjct: 317 INYFGMQRFGNNPDSQTHVIGKLLLQKQWEQAFELIVGQNVQNDNQVNEYKRKFLEDKTK 376
Query: 205 IDGTLRKLPRHLVAERAILQCLKKC--PGNYLQALKAIPRTLRMMYVHSYQSFLWNHAAS 262
+ L+ + ER ++Q +KC GNY+QA+ + R+ R +Y H+YQS+LWN AS
Sbjct: 377 VKEALKNISFKYKIERTVIQGYEKCGMNGNYMQAICQLNRSTRALYCHAYQSYLWNQLAS 436
Query: 263 ARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDG 322
R++K+G + +++GD+V E +N E ++ +D +++ E D+ +
Sbjct: 437 IRIEKYG-KKIILGDIV---AKRKEFFTNSINQE---KNQDDQQQREDEEQIIEDDYFEY 489
Query: 323 RH-NLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPM------NDVAEVYHHLAEKDGIN 375
+ N N +++I+D+V+P+ G+++ +P+ N++ ++ L K+
Sbjct: 490 QGINDFNICIVDQNNIDQFSINDIVIPIFGAKINFPIEQFNLKNELQQILDDLTLKNFEQ 549
Query: 376 LTESLHNVKEFSITSMTGNYRRVFQKPMDFEWEL 409
+ + + G YR + Q+ +FE+ L
Sbjct: 550 INQEFF---------VEGGYRYLIQQTENFEYTL 574
>gi|313239248|emb|CBY14201.1| unnamed protein product [Oikopleura dioica]
Length = 422
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 142/490 (28%), Positives = 221/490 (45%), Gaps = 120/490 (24%)
Query: 52 KMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVK-EGLL 110
++L + + F FAGTKDKR+++ Q VT K L NK+L +++G+F + + L
Sbjct: 25 RILRVNQKLFNFAGTKDKRAITAQFVTS-KLTPEVLVVANKKLKNVKVGNFELLNADHLT 83
Query: 111 LGQLLGNRFTITLRGVVV---------------DSEDVIKASANSLGRNGFINYFGLQRF 155
LG L GN F I LR + D E ++ + SL GF+NY+GLQRF
Sbjct: 84 LGDLKGNEFNIVLRECELISGTNDEPESKKAKPDFEAIVAKACASLNEKGFVNYYGLQRF 143
Query: 156 GSGSVPTHLVGATLLRGEWKSAVKMILDPRE-GERNE-ISKAREYYKETDDIDGTLRKLP 213
G+ S+ TH +G +L+ + AV ++L PRE RN +++ R+ + ET + + L KLP
Sbjct: 144 GTSSIATHEIGVEILKENYAGAVDLLLRPREESARNSFLTETRKIWAETKNANAALDKLP 203
Query: 214 RHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHV 273
R E +L LK P +Y+ AL + R +R MYVH+ QSF+WN AS R+ G +
Sbjct: 204 RKYCNEGRVLFGLKDNPNDYVGALGRLARPMRQMYVHAVQSFIWNRLASFRLSLGG--DI 261
Query: 274 VVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNL-VKTVTA 332
+VGDLV P+ R L V+ V
Sbjct: 262 LVGDLV---------------------------------------QPNEREKLKVERVDE 282
Query: 333 ADINSGKYTIDDVVLPLPGSRVIY-PMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSM 391
I + Y+I+DVV+ +PG V Y P+ + + E G+ NVK++ +
Sbjct: 283 ESIKN--YSIEDVVISMPGFDVCYSPL--LEDFMDKELESLGLTRDSFSGNVKDY---RL 335
Query: 392 TGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEE--EAVCGNKEKD 449
G YR++ P D E ++ Y+ + L ++ ++ +EE E + G+K
Sbjct: 336 PGGYRKLIVLPKDAEANVIMYVSNEENLLVSEGEEF---------REEMGEGLLGDK--- 383
Query: 450 PSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSC 509
N A ++VK + + L + LP S
Sbjct: 384 ---------------------NMAKEGEKVK----------------VGISLKIKLPPSA 406
Query: 510 YATMAIRELL 519
YATMA+RE +
Sbjct: 407 YATMALREFM 416
>gi|428672537|gb|EKX73450.1| conserved hypothetical protein [Babesia equi]
Length = 761
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 161/568 (28%), Positives = 254/568 (44%), Gaps = 130/568 (22%)
Query: 18 SRGSENWPE--QLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQ 75
S S N+ + +L K+L F + K N+DT E + ++ K AG KD+R+++ Q
Sbjct: 258 SNWSSNYKDNVRLRKYLHFTMLKMNRDTSEVVNMLCKCSKRASFDVFTAGNKDRRAITVQ 317
Query: 76 RVTVFKQRASKL-AALNKR--LIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSED 132
R+ + + S++ ++K+ + L DF Y E L LG+L GN F + +RG+ V D
Sbjct: 318 RMCMRRSDISEMFETMSKKGWFKDVYLSDFVYSDERLHLGELSGNFFKVVVRGLDVPPTD 377
Query: 133 VIKASA---------------NSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSA 177
AS+ N L GFINYFGLQRFGS V TH+VGA +++ +++SA
Sbjct: 378 TSSASSHTDDKCISYIIDTRVNYLREYGFINYFGLQRFGSMLVGTHIVGAAIIKHDYESA 437
Query: 178 VKMILDPREGERN---------------------------------------EISKAREY 198
V++IL E ++ + +A +Y
Sbjct: 438 VRLILGDVESAKSFPWFEKYLSTSDAGMSDVDTSESVVTPLKTSVGSSDPERKYKRAVDY 497
Query: 199 YKETDDIDGTLRKLPRHLVAERAILQCL-KKCPGNYLQALKAIPRTLRMMYVHSYQSFLW 257
Y + +D L LP+HL E+++L+ L +K P + + L IP+ + +YVH+ QS ++
Sbjct: 498 YLKDNDAKSALEFLPKHLYIEKSLLKGLDEKLP--FDKCLGKIPKNILSIYVHATQSLIF 555
Query: 258 NHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPET 317
N A S R+ K G E VVGDLV + +D DEVP+
Sbjct: 556 NKAVSERLSKFGYEP-VVGDLV--------------------STGVPDEDEEEGDEVPKN 594
Query: 318 DHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLT 377
+ R +++ ++ +Y+I+ VVLPLPG V YP N V E+ GI L
Sbjct: 595 NK---RRQIIEITNEDEVK--RYSINQVVLPLPGDDVQYPPNMVETYKKTSLEEFGIPL- 648
Query: 378 ESLHNVKEFS--ITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNI 435
E +E S I S+ G+YR + +P D + L+ + P I+++ L NI
Sbjct: 649 EMFSTCREKSKRIVSIGGSYRFIVVRPRDVSYRLIEPL--KNPFEILVPSPISQSGLGNI 706
Query: 436 VKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGK 495
E++ KD S ++ +SK++
Sbjct: 707 ----ESIL----KDGSKYAERMNRISKEL-----------------------------VN 729
Query: 496 QMALKLGLTLPSSCYATMAIRELLKTST 523
+ A+ L +LP S Y TMAIRE+ T
Sbjct: 730 KRAVVLTCSLPKSSYITMAIREVFTDKT 757
>gi|380792161|gb|AFE67956.1| pseudouridylate synthase 7 homolog, partial [Macaca mulatta]
Length = 433
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 80/183 (43%), Positives = 119/183 (65%), Gaps = 2/183 (1%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+WP+ G + F LYKENKDT +A+ ++S+ L + P F + GTKDKR+++ Q + V K
Sbjct: 249 SWPKSRGSYCHFVLYKENKDTMDAINVLSRYLRVKPNIFSYMGTKDKRAITVQEIAVLKI 308
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
A +LA LNK L+ +LG+F Y K L LG+L GN FT+ LR + ++D ++ + NSL
Sbjct: 309 TAQRLAHLNKCLMNFKLGNFSYQKNPLKLGELQGNHFTVVLRN-ITGTDDQVQQAMNSLR 367
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKE 201
GFINY+G+QRFG+ +VPT+ VG +L+ W + +IL PR G E+ + K RE + +
Sbjct: 368 EIGFINYYGMQRFGTTAVPTYQVGRAILQNSWTEVMDLILKPRSGAEKGYLVKCREEWAK 427
Query: 202 TDD 204
T D
Sbjct: 428 TKD 430
>gi|321469715|gb|EFX80694.1| hypothetical protein DAPPUDRAFT_318406 [Daphnia pulex]
Length = 761
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 132/424 (31%), Positives = 201/424 (47%), Gaps = 57/424 (13%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKL--A 88
+++F LY E T+ A+ +++ L + F A K RS S Q VT+ + + L A
Sbjct: 276 YIQFVLYAEKISTKTAIRNMAETLRKSSKCFMTAENKFARSTS-QLVTMKSEDSIGLCLA 334
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+L IGI G+F +V + L LG L GN F I LR V+ ++ I+AS SL NGFIN
Sbjct: 335 SLQNTSIGI--GNFSFVPQPLQLGDLKGNHFNIALRKVI-GNKGQIEASLRSLKDNGFIN 391
Query: 149 YFGLQRFGS-GSVPTHLVGATLLRGEWKSAVKMILDPREGERN------------EISKA 195
Y+ FG VP HL+G LL +W+ A+ +IL P E + E +
Sbjct: 392 YYDNNHFGFIRDVPKHLIGKQLLLKQWQEAIDLILQPSELKSTGDYLSNLTLACIEYKFS 451
Query: 196 REYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSF 255
R +K D+ KL A+ +L +K N A+ I LR+ +V +YQ F
Sbjct: 452 RLVHKTFDETHHI--KLNNSFKAK--LLSSIKIHGENLAVAVNDISLELRVSFVRAYQCF 507
Query: 256 LWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVP 315
LWN S R+ K G + ++VGDLV+ GD ++
Sbjct: 508 LWNTIVSKRIAKFGAK-LIVGDLVYASGDSGRRDY------------------------- 541
Query: 316 ETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGIN 375
+G+ N + + N YTI D VLPLPG + YP N+VA+ Y L DG
Sbjct: 542 -----NGQQNQREVLFIDQNNIHNYTIYDAVLPLPGCNITYPANEVADWYKDLLSADG-- 594
Query: 376 LTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNI 435
L E N+ + + G YR V +P D +W+ + Y + ++ L +DLD++ + + ++
Sbjct: 595 LLEKDFNL-SLNTYGINGAYRPVVLRPSDLKWKFVHYDNPDQKLIPSDLDRLQQVEFPSV 653
Query: 436 VKEE 439
+E
Sbjct: 654 SSQE 657
>gi|344254107|gb|EGW10211.1| Pseudouridylate synthase 7-like-like protein [Cricetulus griseus]
Length = 386
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 117/379 (30%), Positives = 194/379 (51%), Gaps = 52/379 (13%)
Query: 45 EALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCY 104
EA+G+++ LG++P F +AG KDK++++ Q + V K +L + + + R+ F
Sbjct: 3 EAIGVLAIKLGVIPSDFSYAGLKDKKAITYQSMVVRKVTPQRLKNIEEEIKKKRMNVFNI 62
Query: 105 --VKEGLLLGQLLGNRFTITLRGV-------VVDSEDVIKASANSLGRNGFINYFGLQRF 155
V + L LGQL GN F I +R + SE +++A N + GF+NY+G QRF
Sbjct: 63 RSVGDSLRLGQLKGNHFEIVIRNLKNQTNDSASLSERILEAIEN-VKSKGFVNYYGPQRF 121
Query: 156 GSG-SVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPR 214
G G + T +G LL+ E A+K+ L P + + + ++KA+EY+ +T+D GTL +P
Sbjct: 122 GKGRKIQTDQIGLALLKNEMVKAIKLFLTPEDVD-DPVNKAKEYFLQTEDAKGTLSLMPE 180
Query: 215 HLVAERAILQCLKK---CPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTE 271
V ERA+L+ L + +QA + P ++R+ YVH+Y S +WN AAS R+ +G+
Sbjct: 181 FRVRERALLESLHRFGMTEEGCIQAWFSFPHSMRIFYVHAYSSKIWNEAASYRLAAYGSR 240
Query: 272 HVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVT 331
VV GDL+ C +D + E+ SS+ V VT
Sbjct: 241 -VVEGDLI-CLDEDVD----------EHVSSSK----------------------VHLVT 266
Query: 332 AADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSM 391
+ ++ Y I VVLP+ G + YP N + + Y + +DG L V + ++
Sbjct: 267 KQEESARTYAIHQVVLPVLGYNIQYPDNKLGQWYQGVLSRDG--LQACRFRVPALKL-NV 323
Query: 392 TGNYRRVFQKPMDFEWELL 410
G YR + + P + ++L+
Sbjct: 324 PGCYRHILKYPHNVSYQLV 342
>gi|341899612|gb|EGT55547.1| hypothetical protein CAEBREN_08079 [Caenorhabditis brenneri]
Length = 1147
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 148/496 (29%), Positives = 224/496 (45%), Gaps = 79/496 (15%)
Query: 18 SRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRV 77
+R +NW E + K F + KENK+T A L++K L + P + G KDKR V++QRV
Sbjct: 138 TRKRKNWDENIPKECHFTMCKENKETSFACQLLAKFLNVGPNNIKTHGIKDKRGVTSQRV 197
Query: 78 TVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKAS 137
+V + S + LN +L GI++ D Y E + +G GNRF+I LR + SE ++
Sbjct: 198 SVTQVLESTILNLNSKLRGIKVFDCEYKNEPVKMGGHWGNRFSIVLRELPEGSEALLHER 257
Query: 138 ANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILD---PREGERNEISK 194
+ GF+NYFG QRFGS S T +G + + W+SAVKMIL P E +
Sbjct: 258 LETFQNTGFLNYFGTQRFGSRSSTTAEIGLAIAKRNWESAVKMILSNSMPDHLEGGSVGY 317
Query: 195 AREYYKETDDIDGTLRKL---PRHLVAERAILQCLKKCPGNYLQAL-KAIPRTLRMMYVH 250
A + + ET D KL E IL+CL K G + + + +AIP R +YVH
Sbjct: 318 AAKCFTETGDARKAFSKLKGAQAFATVEGNILKCLTKG-GTWQKCITEAIPIQSRSLYVH 376
Query: 251 SYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSH 310
+YQS LWN AS RV++ GT EY+ D
Sbjct: 377 AYQSLLWNKVASRRVREFGTRV------------------------HEYDVGADG----- 407
Query: 311 LDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAE 370
P G H S Y D+ +PLPG + + ++ L E
Sbjct: 408 --------KPLGEH------------SNHY---DIHIPLPGENEAFKESYGSKWISELLE 444
Query: 371 KDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTY-------IDG--NKPLAE 421
+DG++ T +FS+ + R +F + D +W+ + Y DG + + E
Sbjct: 445 EDGLDETCFTSLQDKFSLGEAS---RPLFVEAKDLKWKFIRYENPRTLLQDGLQTRAVPE 501
Query: 422 TDL--DKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEV 479
++L ++A +++ A +E SD K+S ++I L +N+ AKE
Sbjct: 502 SELKGSRLALEIQFSLISGSYATVALREVTGSDMGKKS---MRNISLQNRDNDE--AKEW 556
Query: 480 KQPHVESVCGADSQGK 495
K ES D++ K
Sbjct: 557 KGEEKESERNEDTEVK 572
>gi|348676008|gb|EGZ15826.1| hypothetical protein PHYSODRAFT_505989 [Phytophthora sojae]
Length = 561
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 110/355 (30%), Positives = 181/355 (50%), Gaps = 55/355 (15%)
Query: 27 QLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASK 86
Q +LRF L K N++ +++ L +F +AGTKDK +++ Q V +
Sbjct: 198 QPQAYLRFVLQKTNQEHFTCFDKLTQWLRRPLSAFSYAGTKDKTAITFQHVVASGVTPDR 257
Query: 87 LAALNKR----LIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSED-------VIK 135
L ++NK GIR+GD YV+ L LG GNRF+I +R + + E ++
Sbjct: 258 LQSVNKTDEGAPTGIRVGDLQYVEHPLALGGARGNRFSIVIRDLSSEPESSSKTIQSTLE 317
Query: 136 ASANSLGRNGFINYFGLQRFG--SGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEIS 193
++ + + GF NYFG QR G + +V H +G ++ +W+ A+++IL ++G+ + +
Sbjct: 318 SALDKIKHQGFANYFGFQRVGMPTNTVRAHHIGEKIIACKWEEALRLILAVQDGDSEDGA 377
Query: 194 KAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGN-YLQALKAIPRTLRMMYVHSY 252
KA++ Y E+ DID L+ +P + ER +LQ LK+ + + QA+ ++P + R+MY+H+Y
Sbjct: 378 KAKQLYLESRDIDAALKLMPHGMPVERHVLQGLKRFGSDAFEQAVLSVPFSRRVMYLHAY 437
Query: 253 QSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLD 312
QS+L+N S R++K+G++ VV GDL+ C
Sbjct: 438 QSYLFNRMVSLRLKKYGSK-VVEGDLIKC------------------------------- 465
Query: 313 EVPETDHPDGRHNLVKTVTAADINSGKYTIDD----VVLPLPGSRVIYPMNDVAE 363
D P + VK VTA + T D V LPLPG+ V +P N + E
Sbjct: 466 -----DIPSEKSISVKVVTAEEAAELNGTHADALGLVYLPLPGTTVKFPSNSIKE 515
>gi|308500270|ref|XP_003112320.1| hypothetical protein CRE_30668 [Caenorhabditis remanei]
gi|308266888|gb|EFP10841.1| hypothetical protein CRE_30668 [Caenorhabditis remanei]
Length = 582
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 125/402 (31%), Positives = 182/402 (45%), Gaps = 63/402 (15%)
Query: 18 SRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRV 77
+R +NW E + K F + KENK+T A LI+K L + P + G KDKR V+ QRV
Sbjct: 138 TRKRKNWDENIPKECHFTMCKENKETTFACQLIAKFLNVGPNNIKTHGIKDKRGVTAQRV 197
Query: 78 TVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKAS 137
+V + S + LN +L GIR+ Y E + G GNRF+I LR + DSE ++
Sbjct: 198 SVTQVLESTVLDLNSKLRGIRVFGCEYKHEPVKTGAHWGNRFSIVLRELANDSEPLLHER 257
Query: 138 ANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILD---PREGERNEISK 194
+ GF+NYFG QRFGS S T +G +++ EW+ AVKMI+ P E +
Sbjct: 258 LETFQNTGFVNYFGTQRFGSRSSTTAEIGLAIVKREWERAVKMIMSNAMPGHLEYGLVGH 317
Query: 195 AREYYKETDDID---GTLRKLPRHLVAERAILQCLKKCPGNYLQAL-KAIPRTLRMMYVH 250
A + +T D G LR E IL+CL + G + + + +AIP R +YVH
Sbjct: 318 AARCFNQTGDAKKAFGKLRGAQAFATIEGHILKCLSR-GGTWQKCITEAIPVQSRSLYVH 376
Query: 251 SYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSH 310
+YQS LWN AS RV++ GT +ES AD +
Sbjct: 377 AYQSLLWNKVASRRVKEIGTR--------------------------VHESDVGADGT-- 408
Query: 311 LDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAE 370
P G H T D+ +PLPG + A+ + E
Sbjct: 409 ---------PLGEHA---------------THYDIHIPLPGENEAFANTYGAKWISEILE 444
Query: 371 KDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTY 412
+DG+ +FS+ + R +F + D +W+ + Y
Sbjct: 445 EDGLTQASFTSLQDKFSLGESS---RSLFVEAKDLKWKFIHY 483
>gi|399218787|emb|CCF75674.1| unnamed protein product [Babesia microti strain RI]
Length = 655
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 118/411 (28%), Positives = 192/411 (46%), Gaps = 69/411 (16%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
++ F+L K NKDT E + ++ K L + FAGTKDKR+++ Q+ + + R +L L
Sbjct: 251 YITFNLSKINKDTSEVVEMLCKCLKKSSKEVSFAGTKDKRAITVQQFCIKQTRLEQLL-L 309
Query: 91 NKRLIG----IRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGF 146
G + L F Y +E + +G L GN F I +RG+ ++L NGF
Sbjct: 310 CMTYKGWDKNVFLSKFKYTREKVGIGDLFGNEFKIAIRGIHTSDIGHFVECFDNLNENGF 369
Query: 147 INYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREY-------- 198
INYFG+QRFG+ V TH++GA +L E++ A+++IL G+ N K +
Sbjct: 370 INYFGMQRFGTFKVKTHMIGAAILACEYEQAIRLIL----GDVNLAQKFPSFIHHGLDLD 425
Query: 199 --YKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFL 256
Y + DID T++ LP H+ E+ IL LK+ + Q L+ +PR MY+H+ QS +
Sbjct: 426 IEYLKNGDIDKTIKTLPHHMYIEKNILMNLKR-NCTFKQCLERMPRNTLTMYIHAAQSLI 484
Query: 257 WNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPE 316
+N AS R++ ++GDLV N D+ L+ E
Sbjct: 485 FNFIASKRIEMGYKP--MIGDLVL--------------------QPNSTDEVKVLESEEE 522
Query: 317 TDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINL 376
Y I D+V+PLPG V YP N + E+ G N
Sbjct: 523 --------------------CSMYRITDIVIPLPGDSVTYPPNLNNDYEKISLEQLGTNF 562
Query: 377 TESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDG-NKPLAETDLDK 426
+ + M G+YR + KP+ E+ + ++ ++ + ++++D+
Sbjct: 563 NTTA------PMFQMRGSYRHLIVKPIGLEYYITDKLNAHDQIILDSEIDR 607
>gi|320166602|gb|EFW43501.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
Length = 1067
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 120/423 (28%), Positives = 189/423 (44%), Gaps = 86/423 (20%)
Query: 127 VVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPRE 186
+ + E ++++ SL R+GFINYFGLQRFG+ +VPT +G +L G+W V+++L+PR
Sbjct: 631 MAEMEARVRSAVESLKRDGFINYFGLQRFGTTAVPTCDIGLAILEGDWNRCVQLLLEPRA 690
Query: 187 GERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKC----PGNYLQALKAIPR 242
G+ ++ AR ++ D L+ P ER +L + + P Q+L PR
Sbjct: 691 GDAPDVHLARLHWVRYRDARAALQIFPTASTNERELLIAMLRIGLSDPARCFQSL---PR 747
Query: 243 TLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLV----FCKGDDTEKELG------- 291
+ +Y+HSYQS +WN AS R++++G + VVVGDLV G D E G
Sbjct: 748 HTQTLYIHSYQSKIWNELASERIRRYGYK-VVVGDLVQRGAHSSGADANDEDGEAAAGDA 806
Query: 292 --CVNPEFEYESSNDADDSSHLDEVPETDHP-DGRHNLVKTVTAADINSGKYTIDDVVLP 348
E + +S + E D R N T+ + + Y I DVVLP
Sbjct: 807 PTAGGDEASAPAVYSGAGASTYEATDEADAAFSARMNASVTLIENEEQAASYDISDVVLP 866
Query: 349 LPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHN---VKEFSITSMTGNYRRVFQKPMDF 405
+PG V P N++ +D + L H+ V+ F G+YR + + +
Sbjct: 867 VPGYGVRMPTNEMGSRMVERLAQDKLTLASFNHSHRPVRSF------GDYRHIITRAAEL 920
Query: 406 EWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIK 465
E++ Y D K + TD D++ + + +P D
Sbjct: 921 EFKFYHYNDYTKQFSYTDADRL-----------------DNKPEPED------------- 950
Query: 466 LSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSV 525
+ GK +AL++ LPSS YATMA+REL+K +TS
Sbjct: 951 -------------------------EPDGKLLALQIEFNLPSSAYATMALRELMKIATSA 985
Query: 526 AFH 528
++H
Sbjct: 986 SYH 988
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 66/106 (62%), Gaps = 2/106 (1%)
Query: 19 RGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVT 78
R E W + G++ F L KEN+DT + ++SK+LG+ +F +AGTKDKR+++ QR+T
Sbjct: 441 RAKELWAQ--GEYCEFVLLKENRDTTNCIYIMSKILGVRSTAFSWAGTKDKRAITVQRLT 498
Query: 79 VFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLR 124
+ L A N+ L G+RLG+F L LG L GNRF IT+R
Sbjct: 499 AHRVDPKALKAANQDLHGMRLGNFTITSRQLRLGDLSGNRFAITIR 544
>gi|403416449|emb|CCM03149.1| predicted protein [Fibroporia radiculosa]
Length = 625
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 89/227 (39%), Positives = 129/227 (56%), Gaps = 17/227 (7%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVT------------ 78
++ F + K N+DTQ+AL +S++L + AGTKDKR V+ QRV+
Sbjct: 391 YVHFTMQKTNRDTQDALAQLSRVLHCNVKDLSVAGTKDKRGVTVQRVSLRRGNKTVEDIW 450
Query: 79 -----VFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDV 133
V +R + A ++ GIR+ DF Y K L LG L GN F ITLR V VDS +
Sbjct: 451 NLANGVTGRRTVEDALSHRGERGIRIADFNYRKASLELGMLKGNAFVITLRNVQVDSMET 510
Query: 134 IKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEIS 193
+ + +++ GFINY+G+QRFG+ ++PTH +G LL+ +W AV +IL R GE E+
Sbjct: 511 LDRAMSTIKEKGFINYYGMQRFGTAAIPTHSIGLALLKSDWHKAVSLILCTRPGEHPEVV 570
Query: 194 KAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAI 240
AR + D+D L +PR +VAER IL+ KK G+ A+ A+
Sbjct: 571 AARNAWLVDGDLDKALELMPRRVVAERCILESYKKQRGDTRNAMGAL 617
>gi|302844608|ref|XP_002953844.1| hypothetical protein VOLCADRAFT_64047 [Volvox carteri f.
nagariensis]
gi|300260952|gb|EFJ45168.1| hypothetical protein VOLCADRAFT_64047 [Volvox carteri f.
nagariensis]
Length = 221
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 88/231 (38%), Positives = 127/231 (54%), Gaps = 44/231 (19%)
Query: 134 IKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEIS 193
+ A+ ++ R GFINYFGLQRFG+G PTH VG LLR E+++AV+++L R ER EI+
Sbjct: 2 VTAACEAVARTGFINYFGLQRFGTGGAPTHEVGRALLRCEYENAVRLVLTGRSDERPEIA 61
Query: 194 KAREYYKETDDIDGTLRKLPRHLVAERAILQCL-KKCPGNYLQALKAIPRTLRMMYVHSY 252
AR + E D G LR +P +++ ERA+L L ++ + A++A+PRTLRMMY+H++
Sbjct: 62 AARRLFFEEGDAQGALRGIPNYMLGERAVLGALVRQGATAWSAAMRAVPRTLRMMYLHAW 121
Query: 253 QSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLD 312
QS +WN AAS R + G V
Sbjct: 122 QSHVWNLAASHRWARGGLPGV--------------------------------------- 142
Query: 313 EVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAE 363
T R +LV+ VT AD+ +G+Y++ DVVLPLPG+ V YP ++ E
Sbjct: 143 ----TTSAAKRLSLVRLVTDADVAAGRYSVFDVVLPLPGTEVEYPAHETGE 189
>gi|350596725|ref|XP_003361559.2| PREDICTED: pseudouridylate synthase 7 homolog, partial [Sus scrofa]
Length = 287
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 87/202 (43%), Positives = 126/202 (62%), Gaps = 4/202 (1%)
Query: 84 ASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGR 143
A +LA LNK L+ +LG+F Y K+ L LG+L GN FT+ LR + ++D ++ + NSL
Sbjct: 3 AQRLAHLNKCLMNFKLGNFSYQKKPLKLGELQGNHFTVVLRKIT-GTDDQVQQAMNSLKE 61
Query: 144 NGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKET 202
GFINY+G+QRFG+ +VPT+ VG +L+ W + +IL PR G E+ + K RE + +T
Sbjct: 62 IGFINYYGMQRFGTTAVPTYQVGRAILQNSWTEVMDLILKPRSGAEKGYLVKCREEWAKT 121
Query: 203 DDIDGTLRKLPRHLVAERAILQCLKKCP-GNYLQALKAIPRTLRMMYVHSYQSFLWNHAA 261
D LRKLP E +L+ L K N + A IPR R+MY+HSYQS++WN+
Sbjct: 122 KDPAAALRKLPVKRCVEGQLLRGLSKYGMKNIVSAFGIIPRNNRLMYIHSYQSYVWNNMV 181
Query: 262 SARVQKHGTEHVVVGDLVFCKG 283
S R++++G + V GDLV G
Sbjct: 182 SKRIEEYGLKP-VPGDLVLKGG 202
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 28/41 (68%)
Query: 492 SQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
S+GK ALK+ +LP S YATMAIRE+LK TS+ LN
Sbjct: 242 SEGKYRALKMDFSLPPSTYATMAIREVLKMDTSIKKQTQLN 282
>gi|84994146|ref|XP_951795.1| hypothetical protein [Theileria annulata strain Ankara]
gi|65301956|emb|CAI74063.1| hypothetical protein, conserved [Theileria annulata]
Length = 718
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 133/431 (30%), Positives = 205/431 (47%), Gaps = 72/431 (16%)
Query: 25 PEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRA 84
P+ ++L F++ K N++T E + +I K AG KDKR ++ QR+ + + +
Sbjct: 238 PKSYARYLHFNMLKINRETSEVVNMICKSAKRSSFDIFSAGNKDKRGITVQRMCIRRCKI 297
Query: 85 SKL-AALNKRLIG-IRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
L A+ K + L DF Y + + LG L GN F I +RG+ + + I +L
Sbjct: 298 VDLFEAMTKGWFNDVYLSDFLYKNKRISLGDLTGNHFKIVIRGI--EDQSNIHKCMETLK 355
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-------------------D 183
GFINYFGLQRFG+ V TH+VGA L+ ++ A+++IL +
Sbjct: 356 TYGFINYFGLQRFGTKKVGTHIVGAALIHQKYDLAIRLILGDIETAKQYKVFNKFFKDSE 415
Query: 184 PR-----------------EGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQ-C 225
P E E + A +YY +D + L+ LP HL E++IL+
Sbjct: 416 PEKVDNCESTSIKPENLEGEMEGRKYRWATDYYLIDNDPETALKNLPSHLFIEKSILKGI 475
Query: 226 LKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDD 285
+ K P + + L +P+ + +YVHS QS L+N AAS R+ K G + VV GDLV G+
Sbjct: 476 ISKIPSD--KCLGRVPKNILSIYVHSTQSLLFNLAASERLDKFGYK-VVAGDLV-ATGEQ 531
Query: 286 TEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDV 345
E S N ++ E ++ + + +YTI+ V
Sbjct: 532 ELSESSESEENEPNLSKNKR------IQILEVENEE--------------EAKRYTIEQV 571
Query: 346 VLPLPGSRVIYPMNDVAEVYHHLA-EKDGINLTE--SLHNV---KEFSITSMTGNYRRVF 399
VLPLPG V YP N + E Y +A E I+L + S +V K S+ S+ G+YR +
Sbjct: 572 VLPLPGDNVKYPRN-IEEFYRKIAMENFNISLDDFSSFKDVEGKKHRSLVSVRGSYRFLI 630
Query: 400 QKPMDFEWELL 410
KP D +E++
Sbjct: 631 VKPKDISYEVI 641
>gi|154346558|ref|XP_001569216.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134066558|emb|CAM44356.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 680
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 126/426 (29%), Positives = 202/426 (47%), Gaps = 49/426 (11%)
Query: 30 KFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAA 89
K+ F LYKEN D+ +AL +++ L + R F GTKDKR+V+ QR + + L
Sbjct: 217 KYHHFTLYKENMDSNQALRMLAHHLKLSSRQLQFCGTKDKRAVTLQRAAIRETTVEHLKT 276
Query: 90 LNKRLIG----IRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANS----- 140
+N G +++ F + GL LG LGN F I LR V A+
Sbjct: 277 INSHTFGEHSVMKVCGFTEEEHGLRLGDALGNHFRIVLRVFPVALSPAESATPTCPMLTP 336
Query: 141 ---------LGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNE 191
+ G INYFG QRFG+ + T VG L+G + ++++L +
Sbjct: 337 PHLYEIERVVREAGVINYFGPQRFGTTKILTSDVGIQFLQGRLREGLRLLLSSKACLVPA 396
Query: 192 ISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHS 251
+ + ++Y + D L P + +ER IL+ L + P +YL +L+AI RT+ MMY H+
Sbjct: 397 MQRVVDFY-DASDYAAALEATPYYCYSERDILKHLSRNPNDYLGSLQAIARTMAMMYFHA 455
Query: 252 YQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHL 311
QS +WN AS+R+ G H VGDLV E Y+ S D + L
Sbjct: 456 VQSLVWNRLASSRLSDKGRRHAEVGDLVL---------------ESTYQKSLAGRD-AQL 499
Query: 312 DEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPG--SRVIYP--MNDVAEVYHH 367
E PE + V+ +T+ + + ++ ++DV+LP+PG +IYP + + Y
Sbjct: 500 TESPEA----CKLPAVRRLTSEE-DCARFGLEDVLLPVPGPDEDLIYPSSVGCTRDDYDA 554
Query: 368 LAEKDGINLT--ESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLD 425
+ + GI+ T ++L +K F G YR + +P DF + T P+ ++D
Sbjct: 555 VLAELGIDFTSKQALGLMKVF---HFHGTYRTLGVRPKDFTLRMETVATWRTPVLKSDWQ 611
Query: 426 KIAKAK 431
+ +A+
Sbjct: 612 RHCEAE 617
>gi|17557232|ref|NP_505653.1| Protein B0024.11 [Caenorhabditis elegans]
gi|2501604|sp|Q17426.1|YQ4B_CAEEL RecName: Full=Putative pseudouridine synthase B0024.11
gi|3873676|emb|CAA94883.1| Protein B0024.11 [Caenorhabditis elegans]
Length = 577
Score = 161 bits (407), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 98/260 (37%), Positives = 142/260 (54%), Gaps = 8/260 (3%)
Query: 18 SRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRV 77
SR + W E++ K F + KENK+T A LI+K L + P + G KDKR+V++QRV
Sbjct: 138 SRKRKLWDEKVPKECHFTICKENKETSFACQLIAKFLNVGPNNIRTHGIKDKRAVTSQRV 197
Query: 78 TVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKAS 137
+V K + LN +L GIR+ Y + + +G GNRF+I LR + DSE ++
Sbjct: 198 SVTKVHERTILDLNSKLRGIRVFGCEYKDDPVQMGAHWGNRFSIVLRSLPDDSEQLLHQR 257
Query: 138 ANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILD---PREGERNEISK 194
+ GFINYFG QRFGS S T +G +++ +W+ AVKMI+ P +
Sbjct: 258 LETFQNTGFINYFGTQRFGSRSSTTAEIGLAIVKRDWEKAVKMIMTNAMPDHLGYGSVGY 317
Query: 195 AREYYKETDDIDGTLRKL---PRHLVAERAILQCLKKCPGNYLQAL-KAIPRTLRMMYVH 250
A + + +T D KL E IL+CL K G + + +AIP R +YVH
Sbjct: 318 AAKCFSQTGDARKAFSKLKGAQAFATVEGNILKCLSK-GGTWQNCITEAIPIQSRSLYVH 376
Query: 251 SYQSFLWNHAASARVQKHGT 270
+YQS +WN AS RV+++GT
Sbjct: 377 AYQSLIWNKVASRRVKEYGT 396
>gi|321469717|gb|EFX80696.1| hypothetical protein DAPPUDRAFT_318408 [Daphnia pulex]
Length = 645
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 125/408 (30%), Positives = 194/408 (47%), Gaps = 39/408 (9%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
+++F ++ E T+ A+ I+ L F A K RS + Q VTV K S +
Sbjct: 269 YIQFTMFTEEISTKTAIKKIANRLRKSSDCFMTAEHKIGRS-NCQLVTV-KSEDSIGLCV 326
Query: 91 NKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYF 150
+ L I +G+F + + L G L GN F+I LR ++ D I+A+ SL NGF+NY+
Sbjct: 327 TESLKNISIGNFSFAPKRLQRGDLKGNHFSIALRKIIGDKGH-IEANLRSLKDNGFVNYY 385
Query: 151 GLQRFGS-GSVPTHLVGATLLRGEWKSAVKMILDPREGER--NEISKAREYYKETDDIDG 207
FG P HL+G LL +W+ A+ +IL P + ++I+ A YK + +
Sbjct: 386 ENLHFGLLRDAPKHLIGKQLLLKKWQEAIDLILQPHPELKITDQITLACIEYKFSRVVHL 445
Query: 208 TLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQK 267
T + + +L +K N ++A+ AIP LR+ +V +YQ FLWN S R+ K
Sbjct: 446 TFDEDTLKNSIKAQLLSNIKIHGENLVKAVNAIPFGLRLSFVRAYQCFLWNTIVSKRIAK 505
Query: 268 HGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLV 327
G + ++VGDLV+ GD ++ +HN
Sbjct: 506 FGAK-LIVGDLVYAPGDSGRRD------------------------------NKRQHNQR 534
Query: 328 KTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFS 387
+ + N KYTI DVVLPLPG + YP N+VA Y L DG L E N +
Sbjct: 535 EVIFIDQNNIHKYTIYDVVLPLPGCNITYPANEVAGWYKDLLLADG--LLEKDFNSGLRT 592
Query: 388 ITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNI 435
G YR V +P + EW+ + Y + + L +DLD++ + +L ++
Sbjct: 593 SGIKNGAYRPVVLRPSNLEWKFVHYDNPGQKLIPSDLDRLHQIELPSV 640
>gi|291392411|ref|XP_002712696.1| PREDICTED: CG6745-like [Oryctolagus cuniculus]
Length = 693
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 119/390 (30%), Positives = 194/390 (49%), Gaps = 51/390 (13%)
Query: 34 FHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKR 93
F L KEN D EA+ ++ LG++P F + G KDK++++ Q + V K +L ++ K
Sbjct: 297 FTLRKENVDMFEAIDHLAAKLGVIPPDFSYTGLKDKKAITYQAMVVRKVTPERLKSIEKE 356
Query: 94 LI--GIRLGDFCYVKEGLLLGQLLGNRFTITLRGV------VVDSEDVIKASANSLGRNG 145
+ G+ + + V L LGQL GN F I +R V V+ + I + ++ NG
Sbjct: 357 IAKKGMNVFNVRSVNAALRLGQLKGNHFDIVIRNVRNWNGDPVNLRERILEAIENVKNNG 416
Query: 146 FINYFGLQRF-GSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDD 204
F+NY+G ++ +V +G LL+ E +VK+ L P + + + +++A++Y+ +T+D
Sbjct: 417 FVNYYGPEQLEKERNVHADQIGLALLKEEMVKSVKLFLTPEDVD-DPVNRAKKYFLQTED 475
Query: 205 IDGTLRKLPRHLVAERAILQCLKK---CPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAA 261
GTL +P V ER +L+ L + +P +R +YVH+Y S +WN AA
Sbjct: 476 AKGTLELMPEFRVRERELLELLHRFSLTEEGCTNVWYCLPHHVRTVYVHAYLSQVWNEAA 535
Query: 262 SARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDH-P 320
S R++ +GT VV GDLV C LD+V + +H P
Sbjct: 536 SYRLEAYGTR-VVEGDLV------------C------------------LDDVLDQEHCP 564
Query: 321 DGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESL 380
+ + V VT + + YTI VVLP+ G YP N V + Y L +DG L
Sbjct: 565 NSK---VHLVTKEEELANTYTIYQVVLPVLGHSTQYPGNLVGQWYQELLSRDG--LQTCG 619
Query: 381 HNVKEFSITSMTGNYRRVFQKPMDFEWELL 410
V ++ +M G YR++ ++P + +LL
Sbjct: 620 FRVPALNL-NMPGCYRQILKQPHNLCHQLL 648
>gi|390350835|ref|XP_781173.3| PREDICTED: pseudouridylate synthase 7 homolog-like protein-like
[Strongylocentrotus purpuratus]
Length = 885
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 117/408 (28%), Positives = 196/408 (48%), Gaps = 77/408 (18%)
Query: 34 FHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKR 93
F L K N +T A+ +++++G+ F +AG KDK++V+TQ + V ++L ++K
Sbjct: 318 FTLQKTNTETLSAIQQLARLMGVQISDFTYAGIKDKKAVTTQEMAVKGITITRLQDVSKE 377
Query: 94 LIG-IRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVD--SEDVIKASANSLGRN------ 144
L G +++G + ++ G+L GN F ITL+ V + S +V + GR
Sbjct: 378 LPGWLKVGSIHSRNKSMVTGELWGNHFDITLQNVEMKNGSNEVRAGTVEDKGRELQNCIE 437
Query: 145 ---------GFINYFGLQRFGSGSV-PTHL--------VGATLLRGEWKSAVKMILDPRE 186
GFINY+G QRFG+ SV P+ VG +L+G++K A+ +IL P +
Sbjct: 438 QCIRCVEDRGFINYYGEQRFGASSVDPSKALTTISPADVGCAMLQGKYKEAIDLILSPDD 497
Query: 187 G----ERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGN---YLQALKA 239
G N + A+ +++T L+++P E +L+ L + + ++AL
Sbjct: 498 GPCADPSNATNVAKHCFQQTGSPREALKQMPAMKTRECLLLKGLNRHGTDDDGCIKALMN 557
Query: 240 IPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEY 299
IP +R MYVH++ S +WN AS R+ ++G + VV GDLV + ++LG
Sbjct: 558 IPHNMRQMYVHAFCSLVWNQMASWRMGRYGYQ-VVEGDLV------SIEDLG-------- 602
Query: 300 ESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMN 359
V VT DI GKY++ +V+LPLPG+ + YP +
Sbjct: 603 -------------------------TKVHAVTEDDITQGKYSLTEVMLPLPGNNIQYPSH 637
Query: 360 DVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEW 407
Y ++ G L E + + ++ G YR+V +P + EW
Sbjct: 638 TAGAEYQRRLDEAG--LGECNFRIPALKL-NVPGGYRKVIAQPRNLEW 682
>gi|348526554|ref|XP_003450784.1| PREDICTED: pseudouridylate synthase 7 homolog-like protein-like
[Oreochromis niloticus]
Length = 672
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 120/400 (30%), Positives = 189/400 (47%), Gaps = 54/400 (13%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
+ F L KEN +T EA+ ++ LG+LP F +AG KDKR+++ Q + V K +L
Sbjct: 262 YTAFTLCKENLETLEAISYMAAALGVLPSDFTYAGIKDKRAITYQSMVVKKVSPQRLKEK 321
Query: 91 NKRLI--GIRLGDFCYVKEGLLLGQLLGNRFTITLR---------------GVVVDSEDV 133
N GIR+ V E L LG+L GN F + +R V +
Sbjct: 322 NAEFQNRGIRVFQVRSVSEPLRLGRLQGNHFDLVVRDLRPHGAGDMHSSGGDVHTRLAAL 381
Query: 134 IKASANSLGRNGFINYFGLQRFGSG-SVPTHLVGATLLRGEWKSAVKMILDPREGERNEI 192
+K + ++ GF+NY+G QRFGSG SV VG LL+ + SAV++ P EG+ +
Sbjct: 382 VKEAVENVKARGFVNYYGPQRFGSGQSVQADRVGLALLKEDMVSAVRLFFTPEEGD-DPQ 440
Query: 193 SKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKC---PGNYLQALKAIPRTLRMMYV 249
S A+ ++ +TD+ +L +P ER +L+ L + P QA ++P ++R+ Y
Sbjct: 441 SHAKRHFLQTDNAKESLALMPLSKPRERLMLRALNRYGTGPDGCDQAWLSLPHSMRIFYP 500
Query: 250 HSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSS 309
H+Y S +WN AA+ R+ G V GDLV+ + + E DA ++S
Sbjct: 501 HAYCSRVWNEAAAHRLTTMG-HSVRRGDLVWLRQGQNKME--------------DARETS 545
Query: 310 HLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLA 369
+ VT + G Y ++ VVLP+PG+ V YP N + Y
Sbjct: 546 MAQ--------------IHVVTDEEEQEGIYKLEQVVLPMPGNTVKYPENAMGTWYRERL 591
Query: 370 EKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWEL 409
+DG L + V + ++ G YR + P + ++L
Sbjct: 592 VRDG--LEDCRFRVSSLKL-NLPGCYRPLLAVPHNLRYQL 628
>gi|440300165|gb|ELP92654.1| tRNA pseudouridine synthase D, putative [Entamoeba invadens IP1]
Length = 639
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 127/396 (32%), Positives = 193/396 (48%), Gaps = 77/396 (19%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTV--FKQRASK 86
GK + L K N DT A+ ++S++L I S G+AG KDKR V+ Q VT K+ +
Sbjct: 204 GKTTKCVLRKSNIDTASAVSVLSRILKIGKNSIGYAGMKDKRGVTCQFVTFPSMKEDFIQ 263
Query: 87 LAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGF 146
A + I LG F V++ L LG L GN F + +R V + E+V+K + S+ G+
Sbjct: 264 SALRSNTCKSIALGKFETVEKALTLGDLTGNEFRVLIRE-VSNLEEVVK-NCESMKTCGY 321
Query: 147 INYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKETDDI 205
INY+GLQRFGS THL+G L++G +K AV I+ +EG + ++ +A++ YK
Sbjct: 322 INYYGLQRFGSNGT-THLIGLELMKGNYKKAVDYIM--QEGNDTKDLFEAKQLYKA---- 374
Query: 206 DGTLRK----LPRHLVAERAILQCLKK-----CPGNYLQALKA-IPRTLRMMYVHSYQSF 255
G RK +P + E+ IL LKK G Y ++ A + + +Y+H+YQS+
Sbjct: 375 -GEFRKAENVIPSLCIVEKGILNELKKYGEGTSEGKYKTSIDAGVMYKTKSLYLHAYQSY 433
Query: 256 LWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVP 315
+WN S RV+K+G E V+ GDLV
Sbjct: 434 IWNTVVSKRVEKYG-EKVISGDLV------------------------------------ 456
Query: 316 ETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGIN 375
R + V + + KY I +VV+PL G V YP N+ + L + DG++
Sbjct: 457 ------QRGKTIIVVQSGE--EDKYDIREVVIPLVGRGVQYPENETKQWMEDLLKGDGLS 508
Query: 376 ---LTESLHNVKEFSITSMTGNYRRVFQKPMDFEWE 408
L +S+ NV + G+YR P +F++E
Sbjct: 509 FSTLPKSVFNV------DICGDYRPFIVIPKNFKYE 538
>gi|116753713|ref|YP_842831.1| tRNA pseudouridine synthase D [Methanosaeta thermophila PT]
gi|116665164|gb|ABK14191.1| Pseudouridylate synthase [Methanosaeta thermophila PT]
Length = 433
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 96/261 (36%), Positives = 143/261 (54%), Gaps = 7/261 (2%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G++L + K + DT + + I++ L I R FAGTKD+R+V+ QR+ + +L
Sbjct: 51 GRYLVVEVEKRDWDTHKLVREIARALRISQRRISFAGTKDRRAVTRQRMAIMNLDEDEL- 109
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVD----SEDVIKASANSLGRN 144
++ R+ +++ L LG L GNRF I +R + VD E + + ++ L
Sbjct: 110 -IDLRIPDLKISVLGRTNRPLGLGDLKGNRFRIVIRDLAVDVDSARERMERITSEILEIG 168
Query: 145 GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILD-PREGERNEISKAREYYKETD 203
G NYFG+QRFG THLVG ++RG+ + AV L P +GE E ARE E+
Sbjct: 169 GVPNYFGVQRFGEIRPVTHLVGEAIVRGDLERAVFTYLSMPFDGEPEETRAAREELWESG 228
Query: 204 DIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASA 263
D+ LR+ PRHL E A+L L PG++ AL +P LR M+VH+YQS+L+N S
Sbjct: 229 DVRAALRRYPRHLTYELAMLNHLVSSPGDHAGALMVLPDNLRRMFVHAYQSYLFNRMLSM 288
Query: 264 RVQKHGTEHVVVGDLVFCKGD 284
R+++ T V GD+V D
Sbjct: 289 RLRRCLTFEPVEGDIVCFSKD 309
>gi|209879131|ref|XP_002141006.1| tRNA pseudouridine synthase D family protein [Cryptosporidium muris
RN66]
gi|209556612|gb|EEA06657.1| tRNA pseudouridine synthase D family protein [Cryptosporidium muris
RN66]
Length = 844
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 150/580 (25%), Positives = 245/580 (42%), Gaps = 130/580 (22%)
Query: 4 NSKKRKERGDNPFDSR--GSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSF 61
N ++R++ SR E W + ++ F++YKEN+DT + + ++ K L +SF
Sbjct: 323 NKRRRRDSYIAKMFSRKNSDERWDSSIPDYIHFNIYKENRDTMDVINMLCKCLQRSDQSF 382
Query: 62 GFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLI-----GIRLGDFCYVKEGLLLGQLLG 116
G AG KD+R ++ QR + + R +K +N L +R+ + + +G L G
Sbjct: 383 GIAGLKDRRGITVQRASAY--RVTKEQMINATLSKAWDRNVRICSIIPSYKPIKIGDLDG 440
Query: 117 NRFTITLRGVVVDSE---------------------DVIKASANSLGRNGFINYFGLQRF 155
N F + +R + + + + IK +S+ GFINY+GLQRF
Sbjct: 441 NLFHVVIRNLFLVNNLSEKAEIEGNLNESKCTKLTFNTIKMLVDSIKSQGFINYYGLQRF 500
Query: 156 GSGSVPTHLVGATLLRGEWKSAVKMIL------DPREGERNEISKAREYYKETDDIDGTL 209
G+ +PT+ +G L++ W+SA ++IL E N S Y + D L
Sbjct: 501 GTSKIPTYKIGIELVKKNWESAFQLILGYDLHSKQASNEGNVESMEIIEYIKRGDFRKYL 560
Query: 210 RKLPRHLVAERAILQCLKK---------------------CPGNYLQALKAIPRTLRMMY 248
HL ER ++ L++ P Y + L IP+ +Y
Sbjct: 561 ELASSHLYIERNLVLNLQREIKKQGENNDKKALVNNNLDISPNIYKRCLDHIPKGSYWLY 620
Query: 249 VHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDS 308
+HS QS ++N AS R++K G + VVGDLV K +D+ ++E + D +
Sbjct: 621 IHSLQSLIFNIVASERIRKFGKKP-VVGDLVISKSNDS----------VQFEDNMDISIN 669
Query: 309 SHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHL 368
S ++++ D+ KY I+D+VL LPG +IYP N + E Y +
Sbjct: 670 SKY----------TNNSIIAIEYETDL--SKYNIEDIVLSLPGDEIIYPPN-LFEFYIEI 716
Query: 369 AEK-DGINLTESLHNVKEFSITSMTGNYRR--VFQKPMDFEWELLTYIDGNKPLAETDLD 425
+K G+++ + N+ + G+YR V K DF
Sbjct: 717 WQKYTGMSIGKD--NI------GLPGSYRNLVVIPKYADF-------------------- 748
Query: 426 KIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENN--EAACAKEVKQPH 483
IA K+ N E SD +S+ L D+ + +N ++ P
Sbjct: 749 -IAIEKV-----------PNNEDPKSDFFVESKLLKSDLDILLDNRGYQSCTGYNRIHPI 796
Query: 484 VES---VCGAD-SQGKQMALKLGLTLPSSCYATMAIRELL 519
+S V +D + A LP S Y TMA+RELL
Sbjct: 797 CQSGINVINSDVGESNITAAIFTCILPKSSYVTMALRELL 836
>gi|355714604|gb|AES05057.1| pseudouridylate synthase 7-like protein -like protein [Mustela
putorius furo]
Length = 399
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 97/270 (35%), Positives = 155/270 (57%), Gaps = 17/270 (6%)
Query: 34 FHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKR 93
F L KEN + EALG ++ LG++P F +AG KDK++++ Q + V K +L + K
Sbjct: 130 FTLRKENLEMFEALGFLAIKLGVIPSDFSYAGLKDKKAITYQAMVVRKVTPERLKNIEKE 189
Query: 94 LIGIRLGDFCY--VKEGLLLGQLLGNRFTITLRGV---VVDS----EDVIKASANSLGRN 144
+ R+ F V + L LGQL GN F I +R + + DS E +++A N +
Sbjct: 190 IEKKRMNVFNIRSVDDSLRLGQLKGNHFDIIIRNLRSQINDSANLRERILEAIEN-VKNK 248
Query: 145 GFINYFGLQRFGSG-SVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETD 203
GF+NY+G QRFG G V T +G LL+ + A+K+ L P + + + +++A++Y+ +T+
Sbjct: 249 GFVNYYGPQRFGMGRKVHTDQIGLALLKSKMVEAIKLFLTPEDLD-DPVNRAKKYFLQTE 307
Query: 204 DIDGTLRKLPRHLVAERAILQCLKK---CPGNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
D GTL +P V ERA+L+ L + +QA + P ++R+ YVH+Y S +WN A
Sbjct: 308 DAKGTLSLMPEFKVRERALLESLHRFGMTEEGCIQAWFSFPHSMRIFYVHAYSSKIWNEA 367
Query: 261 ASARVQKHGTEHVVVGDLVFCKGDDTEKEL 290
S R+ +G+ VV GDLV C +D ++
Sbjct: 368 VSYRLATYGSR-VVEGDLV-CLDEDIDEHF 395
>gi|71031696|ref|XP_765490.1| hypothetical protein [Theileria parva strain Muguga]
gi|68352446|gb|EAN33207.1| hypothetical protein, conserved [Theileria parva]
Length = 721
Score = 155 bits (392), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 128/431 (29%), Positives = 200/431 (46%), Gaps = 72/431 (16%)
Query: 25 PEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRA 84
P+ ++L F++ K N+DT E + +I K AG KDKR ++ QR+ + + R
Sbjct: 241 PKSYARYLHFNMLKINRDTSEVINMICKSAKRSSFDVFSAGNKDKRGITVQRLCIRRCRI 300
Query: 85 SKL-AALNKRLIG-IRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
L A+ KR + + D Y + LG L GN F I +RG+ + I L
Sbjct: 301 VDLFEAMTKRWFDDVYVSDLFYKNSKISLGDLTGNHFKIVIRGI--EDHSNIHKCMERLK 358
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILD------------------- 183
GFINYFGLQRFG+ V TH+VGA L+ ++ A+++IL
Sbjct: 359 NYGFINYFGLQRFGTKMVGTHIVGAALIHQKYDLAIRLILGDIEKAKQYKVFNKFYDNAD 418
Query: 184 ------------PREGERNEISK-----AREYYKETDDIDGTLRKLPRHLVAERAILQ-C 225
E E E+ A +YY +D + L+ LP HL E+++L+
Sbjct: 419 LDKLNNYESRPIKSENEEGEVEDRKFRWATDYYLIGNDAEMALKYLPSHLFVEKSLLKGV 478
Query: 226 LKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDD 285
+ P + + L +P+ + +YVHS QS L+N AA+ R+++ G + V VGDLV
Sbjct: 479 ISNIPPD--KCLGRVPKNILTIYVHSTQSLLFNLAATERLERFGYK-VAVGDLV------ 529
Query: 286 TEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDV 345
+ SS DD +L + R +VK + + +YTID V
Sbjct: 530 ------ATGEQELSSSSESEDDEVNLG-------LNKRTQVVKVENEEE--ARRYTIDQV 574
Query: 346 VLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEF------SITSMTGNYRRVF 399
VLPLPG V YP N + + Y ++ ++ E + K+ S+ S+ G+YR +
Sbjct: 575 VLPLPGDNVKYPEN-MEDFYRKISMENFNIPLEDFSSFKDIEGKKHRSLVSVRGSYRFLI 633
Query: 400 QKPMDFEWELL 410
KP D +E++
Sbjct: 634 VKPRDVSYEVI 644
>gi|113678745|ref|NP_001038422.1| pseudouridylate synthase 7 homolog-like protein [Danio rerio]
gi|123888074|sp|Q1L8I0.1|PUS7L_DANRE RecName: Full=Pseudouridylate synthase 7 homolog-like protein
Length = 643
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 117/404 (28%), Positives = 197/404 (48%), Gaps = 66/404 (16%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKL--- 87
+ F L KEN +T EA+ ++ +LG+LP F +AG KDKR+++ Q + V K +L
Sbjct: 247 YTAFTLRKENLETLEAISYMAAVLGVLPSDFTYAGIKDKRAITYQAMVVKKISPERLLEK 306
Query: 88 -AALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGV-------VVDSEDVIKASAN 139
+ +R G+ + E L LG+L GN F + +R + + + VI+ +
Sbjct: 307 GSEFERR--GMEISRVRPAFEALKLGRLQGNHFELVIRDLKHHGKHGLAELPKVIEEAVE 364
Query: 140 SLGRNGFINYFGLQRFGSGS-VPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREY 198
++ GF+NY+G QRFGSGS V VG LL+ +++VK+ P E + + +KA+ +
Sbjct: 365 NVKNKGFVNYYGPQRFGSGSCVQADQVGLALLKENMEASVKLFFTP-EDDDDLQNKAKRH 423
Query: 199 YKETDDIDGTLRKLPRHLVAERAILQCLKK-------CPGNYLQALKAIPRTLRMMYVHS 251
+ T + +L +P + ER +L+ L + C +L ++P ++R+ Y+HS
Sbjct: 424 FLHTGNAKESLVLMPAYKARERLMLRALHRYGSGQEGCTRGWL----SLPHSMRVFYLHS 479
Query: 252 YQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHL 311
Y S +WN AA R+QK G + V GDLV+ E D++
Sbjct: 480 YCSRVWNQAAKYRLQKLGFK-PVQGDLVWA------------------EPVKGLKDATEE 520
Query: 312 DEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEK 371
P+ + VT+ + + +++D V+LP+PG+ V YP N + + Y +
Sbjct: 521 LSAPQ----------IHVVTSDEEKNEVFSLDQVILPMPGNSVKYPENLLGQWYQDRLAQ 570
Query: 372 DGINLTESLHNVKEFSITSM----TGNYRRVFQKPMDFEWELLT 411
DG+ ES F +T + G YR + KP + + L T
Sbjct: 571 DGL---ESCR----FRVTPLKLNVPGCYRPLLAKPQNITYSLQT 607
>gi|428183221|gb|EKX52079.1| hypothetical protein GUITHDRAFT_133817 [Guillardia theta CCMP2712]
Length = 640
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 135/519 (26%), Positives = 234/519 (45%), Gaps = 87/519 (16%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRAS--K 86
GKFL+F LYK +DT E + +++ LG+ + FAG KD+ ++ Q + + + AS K
Sbjct: 125 GKFLKFVLYKAGRDTFEMVRRLAQELGLTTQDISFAGLKDRGGITQQELCIESRLASPEK 184
Query: 87 LAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGF 146
+ ALN + +G+F + GL G+ GN F+I +R + D E + + + ++GF
Sbjct: 185 ILALNGVFKRVLVGNFMWSSHGLHYGEHSGNTFSIVVRHIETDLE-MTRKAVRKWKKHGF 243
Query: 147 INYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYY---KETD 203
NY+G + +P+ VG L++G ++ AV +LDP +E +A+E + K
Sbjct: 244 CNYYGHR------IPSIEVGRALVKGHFRVAVDAVLDPSFAIGHEERQAKERWMNGKNLK 297
Query: 204 DIDGTLRKLPRHLVAERAILQCLKKCPGN------------YLQALKAIPRTLRMMYVHS 251
LR++P ER +LQ L K + +A +P+ R +++ S
Sbjct: 298 SASEALREMPFECANERFVLQSLIKQSKDLNNNRQDFSNDQMRKACDTMPQ--RFIFIQS 355
Query: 252 YQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHL 311
+ S LWN A + R +G V GDLV + TEK
Sbjct: 356 FWSRLWNEALTLRSNLYGLRGCVEGDLVRLR---TEKR---------------------- 390
Query: 312 DEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGS--RVIYPMNDVAEVYHHLA 369
D+ + DH V VTA++ + K+ I DVVLP+ G+ V YP N + + L
Sbjct: 391 DDGMKVDH-------VHVVTASEAKNKKFDIFDVVLPVFGAGVEVKYPNNKLKYLMEKLL 443
Query: 370 EKDGI-NLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIA 428
++G+ + + + + +YR + +P + ++ + Y G + DL +
Sbjct: 444 HREGVFGVVKQIRKKAGVLLPQRVCSYRSIVTRPKNVSYKFINYRPG-----QHDLQTVH 498
Query: 429 KAKLVNIVKEEEAVCG----NKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHV 484
CG +K+ S+ + Q ++ ++ K +E ++
Sbjct: 499 S-------------CGGGDIRMDKNTSNLVYQHPTVGRNSKRRASVDEEGMKLRIRTEE- 544
Query: 485 ESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTST 523
G + Q + AL + TL +ATM++REL+KTST
Sbjct: 545 ---GGKEQQYRWNALWIKFTLDPGSFATMSLRELMKTST 580
>gi|307352945|ref|YP_003893996.1| tRNA pseudouridine synthase D TruD [Methanoplanus petrolearius DSM
11571]
gi|307156178|gb|ADN35558.1| tRNA pseudouridine synthase D TruD [Methanoplanus petrolearius DSM
11571]
Length = 423
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 96/257 (37%), Positives = 145/257 (56%), Gaps = 4/257 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G +L L K N D Q+A+ ISK+LG+ R G+ GTKDKR+V+ Q ++++ +
Sbjct: 49 GPYLICELEKTNWDLQKAVKEISKVLGVSQRRIGWGGTKDKRAVTRQLISIYGVSEEDVE 108
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFI- 147
A+ + I +++ + + LG L GN F IT+R + I +S G I
Sbjct: 109 AIRIKDISLKVAG--HANSQISLGDLKGNNFAITIRDIGTTDPAPILEEVSSASVAGKIP 166
Query: 148 NYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKETDDID 206
NYFG+QRFG+ THL G +L+G+++ AVK + G E E AR++Y +T+D+
Sbjct: 167 NYFGIQRFGATRPVTHLTGFDILKGDFREAVKTYVSFSCGNEPEETEIARKHYLDTEDVR 226
Query: 207 GTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQ 266
TL +P HL ERA+L L + PG+Y ALK P L M+V + QS+L+N A S R++
Sbjct: 227 ETLAIMPNHLRYERAMLHHLIEEPGDYEGALKVTPPKLLSMFVSAAQSWLFNKALSRRLE 286
Query: 267 KHGTEHVVVGDLVFCKG 283
G + +VGD + KG
Sbjct: 287 AGGLDEPLVGDRLIFKG 303
>gi|432114553|gb|ELK36401.1| Pseudouridylate synthase 7 like protein-like protein [Myotis
davidii]
Length = 660
Score = 154 bits (390), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 109/388 (28%), Positives = 186/388 (47%), Gaps = 82/388 (21%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
+ F L KEN + EA+G ++ +LG++P F +AG KDK++++ Q + V K +
Sbjct: 302 YTAFTLQKENLEMFEAIGFLAVILGVIPSDFSYAGLKDKKAITYQAMVVRK--------V 353
Query: 91 NKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYF 150
+ ++ D ++E +L + ++ GF+NY+
Sbjct: 354 TPESVKNQINDSANLRERIL-------------------------EAIENVKHKGFVNYY 388
Query: 151 GLQRFGSG-SVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDDIDGTL 209
G QRFG G V T +G LL+ E AVK+ L P + + + ++KA++Y+ +T+D GTL
Sbjct: 389 GPQRFGIGRKVHTDQIGLALLKSEMVKAVKLFLTPEDLD-DPVNKAKKYFLQTEDAKGTL 447
Query: 210 RKLPRHLVAERAILQCLKK---CPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQ 266
+P V ERA+L+ L + +QA + P ++R+ Y+H+Y S +WN A S R+
Sbjct: 448 SLMPEFKVRERALLESLHRFSMTEEGCIQAWFSFPHSMRIFYIHAYSSKIWNEAVSYRLA 507
Query: 267 KHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNL 326
+G+ VV GDLV C++ D DD ++ P +N
Sbjct: 508 TYGS-RVVEGDLV------------CLD--------EDGDD----EQFP--------NNK 534
Query: 327 VKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEF 386
V VT + ++ Y I VVLP+ G V YP N V Y + +DG+ F
Sbjct: 535 VHLVTEEEESANAYAIHQVVLPVLGYNVQYPKNKVGLWYQEVLSRDGLQTC-------RF 587
Query: 387 SITSMT----GNYRRVFQKPMDFEWELL 410
+ ++ G YR++ ++P + ++L+
Sbjct: 588 KVPTLKLNVPGCYRKILKQPRNLSYQLI 615
>gi|410918969|ref|XP_003972957.1| PREDICTED: LOW QUALITY PROTEIN: pseudouridylate synthase 7
homolog-like protein-like [Takifugu rubripes]
Length = 651
Score = 154 bits (390), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 118/395 (29%), Positives = 190/395 (48%), Gaps = 51/395 (12%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKL--- 87
+ F L KEN +T EA+ ++ LG+LP F +AG KDKR+++ Q + V K +L
Sbjct: 255 YTAFTLCKENLETLEAISYMAAELGVLPSDFTYAGIKDKRAITYQSMVVKKVSPQRLEEK 314
Query: 88 -AALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSED--------VIKASA 138
A KR G+RL V E L LG+L GN F + +R + +IK +
Sbjct: 315 SAEFEKR--GMRLSQIHSVGEPLRLGRLQGNHFDLVVRDLRPHRAGEAHPPLAALIKEAV 372
Query: 139 NSLGRNGFINYFGLQRFGSG-SVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKARE 197
++ GF+NY+G QRFGSG SV + VG LL+ ++ AV + P EG + S A+
Sbjct: 373 ENVESRGFVNYYGPQRFGSGQSVQSDRVGLALLKEDFVGAVHLFFTPEEGH-DPPSLAKR 431
Query: 198 YYKETDDIDGTLRKLPRHLVAERAILQCLKKC---PGNYLQALKAIPRTLRMMYVHSYQS 254
++ +T++ +L +P ER +L+ L + QA ++P + R+ Y H+Y S
Sbjct: 432 HFLQTENAKESLAMMPFSKPRERLMLRALNRYGTGAEGCAQAWLSLPHSTRVFYPHAYCS 491
Query: 255 FLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEV 314
+WN AA+ R+ G V GDLV+ + ++S L++
Sbjct: 492 RVWNEAAAHRLITLG-HSVRSGDLVWRQ-----------------------EESQILEDT 527
Query: 315 PETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGI 374
E+ P + VT + G Y ++ V+LP+PG+ V YP N + + +DG
Sbjct: 528 GESSTPQ-----IHVVTDQEEQDGAYNLEQVLLPMPGNTVKYPENAMGPWFQERLSRDG- 581
Query: 375 NLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWEL 409
L S V + ++ G YR + P + ++L
Sbjct: 582 -LEGSRFRVSGLKL-NLPGCYRPLLASPRNLRYQL 614
>gi|299117412|emb|CBN73915.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 1019
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 128/444 (28%), Positives = 204/444 (45%), Gaps = 90/444 (20%)
Query: 16 FDSRGSENWPEQLG--------KFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTK 67
FDS G + + G +++RF L KE ++ +SK L + + F G K
Sbjct: 343 FDSHGGNDSGRKCGGANEGSGTRWVRFGLRKEGREHHVTALALSKALRVPLSALSFGGIK 402
Query: 68 DKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVV 127
DKR+++TQ V K+ +N + G+ +G+ Y GL LG+L GN+F++ +RGV+
Sbjct: 403 DKRAITTQACIVKGVPPRKILEINGSIPGVTVGNLSYCARGLNLGELSGNKFSVVVRGVM 462
Query: 128 VDSEDVIKASANSLGRNGFINYFGLQRFGS------GSVPTHLVGATLLRGEWKSAVKMI 181
V +K+S NGFIN++G QR GS G + +G +L G+W++AVK I
Sbjct: 463 VPGA-AVKSSLEEACSNGFINFYGTQRVGSPLAAARGQPLPYQIGRHVLAGDWEAAVKKI 521
Query: 182 LDPREGERNEISKAREYYKE----TDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQ-A 236
L PR+ + + A + E D +R R L ER +LQ L + + Q A
Sbjct: 522 LQPRDNDPPFLHSALAEFFEGKITAKDCAARVRGRNR-LSTERLVLQGLVRYGASAFQAA 580
Query: 237 LKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVF----CKGDDTEKELGC 292
++ +P +R M+VH+YQS +WN A AR++ G+E V GDLV C +E+G
Sbjct: 581 IQCVPFGMRTMWVHAYQSHVWNSLACARIRLLGSE-AVPGDLVLPADVCT---ATEEIGE 636
Query: 293 VNPEFEYESSNDADD---SSHLDEVP------ETDHP-DGRH--NLVKTVTAA------- 333
++P F S +D SS P ET+ GRH L+ + TAA
Sbjct: 637 MSPAFTGAVSAGTEDSLPSSCAARAPAAREDGETEETCPGRHVNGLLSSTTAAVGDGAKG 696
Query: 334 ------DINSGK--------------------------------YTIDDVV----LPLPG 351
D ++G+ T D++ LPL G
Sbjct: 697 SGHEAGDGHTGRESAGSSSVASGRGRGLVTALTSETIQAFASEGVTPRDLLRRVVLPLAG 756
Query: 352 SRVIYPMNDVAEVYHHLAEKDGIN 375
+ + YP++ + +Y ++DG++
Sbjct: 757 TSIQYPLHQIGSMYRQRLQEDGVD 780
>gi|118348974|ref|XP_001007960.1| tRNA pseudouridine synthase D [Tetrahymena thermophila]
gi|89289727|gb|EAR87715.1| tRNA pseudouridine synthase D [Tetrahymena thermophila SB210]
Length = 619
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 121/397 (30%), Positives = 205/397 (51%), Gaps = 34/397 (8%)
Query: 36 LYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLI 95
L+K D A+ ISK L + P++ AG KDKR ++TQ +++ S LN+R
Sbjct: 183 LFKNGIDNFTAIQNISKYLRLPPKNINAAGIKDKRGITTQLISIAMSNTSA-EILNQRFQ 241
Query: 96 GIRLGDFCY--VKEG---LLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYF 150
R + VK+ L G L GNRF++ +R V + ++VIKA L + GFINYF
Sbjct: 242 NSRWNNMKVQNVKDATSQLRTGDLYGNRFSLAIRLVSYEEQEVIKA-VEDLKKLGFINYF 300
Query: 151 GLQRFGSG-SVPTHLVGATLLRGEWKSAVKMILDPREGER--NEISKAREYYKETDDIDG 207
G+QRFG+ S+ TH +G +L+ +W+ I+ ++ NE KA + K+ I
Sbjct: 301 GMQRFGTNNSIHTHEIGLLILKRQWEQVFDSIVGQETNDKRVNEAKKA--FLKDKTQIRD 358
Query: 208 TLRKLPRHLVAERAILQCLKKC--PGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARV 265
LR +P ER +LQ ++ N+LQA+ + R+ R +Y H+YQS++WN AS R+
Sbjct: 359 ALRDIPFKYKIERTLLQGYERVGMKNNFLQAICFLNRSTRNLYCHAYQSYIWNLLASYRI 418
Query: 266 QKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHN 325
Q G + +V GD+V K + N + E+ + ++ ++ E+ +
Sbjct: 419 QTLGNQ-LVKGDIVAKKRE---------NFLIDVEAEVEEENGQEEEQEEESKYQSIGDY 468
Query: 326 LVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVY-HHLAEKDGIN--LTESLHN 382
++ + ++I+ KYT+ DV++P+ G ++ P N Y + EKDG++ L E +
Sbjct: 469 EIEVIDDSNID--KYTLYDVLIPIIGGKLKIPENFNLNAYLTSILEKDGLDQQLFEKIQ- 525
Query: 383 VKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPL 419
KEF + G YR + + D ++ + Y + N+ +
Sbjct: 526 -KEFFV---EGGYRFLICQAEDVQYSINKYNEKNQDI 558
>gi|432943354|ref|XP_004083173.1| PREDICTED: pseudouridylate synthase 7 homolog-like protein-like
[Oryzias latipes]
Length = 646
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 115/400 (28%), Positives = 195/400 (48%), Gaps = 52/400 (13%)
Query: 25 PEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRA 84
PE + + F L K N +T EA+ ++ LG+LP F +AG KDKR+V+ Q + V K
Sbjct: 245 PEDI--YTAFTLRKVNLETLEAISHMAAALGVLPSDFTYAGIKDKRAVTYQSMVVKKVSP 302
Query: 85 SKL--AALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGV-------VVDS--EDV 133
+L ++ + G+++ V E L LG+L GN F + +R + D+ E +
Sbjct: 303 ERLKEKSIEFEMRGMKVSHVHKVGEPLKLGRLRGNHFDLVVRNIKPHRTASFADAHLEGL 362
Query: 134 IKASANSLGRNGFINYFGLQRFGS-GSVPTHLVGATLLRGEWKSAVKMILDPREGERNEI 192
+K + ++ GF+NY+G QRFGS +V + VG LL+ + +AV++ P E +
Sbjct: 363 VKEAVENVKTTGFVNYYGPQRFGSCQTVQSDQVGLALLKEDMVNAVRLFFTP-EDAMDPP 421
Query: 193 SKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKC---PGNYLQALKAIPRTLRMMYV 249
++A+ + +T++ L +P ER +L+ + + P QA ++P +R+ Y
Sbjct: 422 NQAKRLFLQTNNAKEALALMPSSKPRERLMLRAMNRYGTGPDGCAQAWLSLPHGMRVFYP 481
Query: 250 HSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSS 309
H+Y S +WN A + R+ G V GDLV+ + E E + S DA
Sbjct: 482 HAYCSRVWNEAVAHRLSTLG-HRVKQGDLVWTE-------------EKEIKESGDATSPK 527
Query: 310 HLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLA 369
+ VTA + G +T++ ++LP+PG+ V YP N +A Y
Sbjct: 528 -----------------IHVVTAQEEQGGIFTLEQLLLPMPGNTVKYPENAMATWYQERL 570
Query: 370 EKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWEL 409
+DG LT+ V + ++ G YR + P + ++EL
Sbjct: 571 ARDG--LTDCRFRVSSLKL-NLPGCYRPLLAVPHNLQYEL 607
>gi|141795869|gb|AAI34852.1| Pus7l protein [Danio rerio]
Length = 642
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 114/402 (28%), Positives = 196/402 (48%), Gaps = 66/402 (16%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKL--- 87
+ F L KEN +T EA+ ++ +LG+LP F +AG KDKR+++ Q + V K +L
Sbjct: 246 YTAFTLRKENLETLEAISYMAAVLGVLPSDFTYAGIKDKRAITYQAMVVKKISPERLLEK 305
Query: 88 -AALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGV-------VVDSEDVIKASAN 139
+ +R G+++ E L LG+L GN F + +R + + + VI+ +
Sbjct: 306 GSEFERR--GMQISRVRPAFEALKLGRLQGNHFELVIRDLKHHGKHGLAELPKVIEEAVE 363
Query: 140 SLGRNGFINYFGLQRFGSGS-VPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREY 198
++ GF+NY+G QRFGSGS V VG LL+ +++VK+ P E + + +KA+ +
Sbjct: 364 NVKNKGFVNYYGPQRFGSGSCVQADQVGLALLKENMEASVKLFFTP-EDDDDLQNKAKRH 422
Query: 199 YKETDDIDGTLRKLPRHLVAERAILQCLKK-------CPGNYLQALKAIPRTLRMMYVHS 251
+ T + +L +P + ER +L+ + + C +L ++P ++R+ Y+HS
Sbjct: 423 FLHTGNAKESLALMPAYKARERLMLRAIHRYGSGQEGCTRGWL----SLPHSMRVFYLHS 478
Query: 252 YQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHL 311
Y S +WN AA R+QK G + V GDLV+ E D++
Sbjct: 479 YCSRVWNQAAKYRLQKLGFK-PVQGDLVWA------------------EPVKGLKDATEE 519
Query: 312 DEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEK 371
P+ + V + + + +++D V+LP+PG+ V YP N + + Y +
Sbjct: 520 LSAPQ----------IHVVASDEEKNEVFSLDQVILPMPGNSVKYPENILGQWYQDRLAQ 569
Query: 372 DGINLTESLHNVKEFSITSM----TGNYRRVFQKPMDFEWEL 409
DG+ ES F +T + G YR + KP + + L
Sbjct: 570 DGL---ESCR----FRVTPLKLNVPGCYRPLLAKPQNITYSL 604
>gi|428177653|gb|EKX46532.1| hypothetical protein GUITHDRAFT_107735 [Guillardia theta CCMP2712]
Length = 555
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 141/513 (27%), Positives = 224/513 (43%), Gaps = 95/513 (18%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVF---KQRASKL 87
+ +F L+K DT E + +S L + +F G KD +++TQ +TV+ K+R ++
Sbjct: 77 YFQFTLHKTMIDTFEVISELSSALNVPFSNFSVFGLKDSFAITTQEMTVYGVSKERLEEV 136
Query: 88 AALNKRLIG-IRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGF 146
+K +I IR D GQ GN+FTI +R + D E + + SL NGF
Sbjct: 137 NEFDKFIISNIREAD-----APQRPGQHYGNKFTIVVRDLKADDEHT-QVAMKSLTENGF 190
Query: 147 INYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAR------EYYK 200
+NY G+QRFG GS T L+G LL ++ +AV +L P + + + R E +
Sbjct: 191 VNYLGMQRFGKGSSETELMGRLLLMQDYITAVDALLRPPHEDERHVKELRAWNLAWEAWT 250
Query: 201 ETDDIDGTLRKLPRHLVAERAILQCL-----KKCPGNYL--QALKAIPRTLRMMYVHSYQ 253
D +P+ E +L L K P + + + + +IP RM+ VH+Y
Sbjct: 251 HARDATTARNIMPKSKRQECDVLDHLVFFGKKGLPLHEICRKTVLSIPLQKRMLMVHAYF 310
Query: 254 SFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLD- 312
+WN AS R++ +G + VVGDLV+ DD E S D +D D
Sbjct: 311 GKIWNVMASERLRMYGID-PVVGDLVY--NDDV-------------EDSTDVNDVESSDT 354
Query: 313 EVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYH-HLAEK 371
E+ + K ++A DI S +YT D++LP P YP N+++ +Y +L+
Sbjct: 355 ELEDFSWTWSSKTNTKVLSAQDIESKRYTRFDLILPFPAGDAAYPNNEMSNLYRMYLSYD 414
Query: 372 DGIN----LTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKI 427
G++ + S H K F + YR +F KP +F W + ++DK
Sbjct: 415 LGVSQIHFIERSWHGNKLF----LRPVYRHLFSKPEEFTWSI------------ANIDKS 458
Query: 428 AKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESV 487
+ E+ V GN + A P++E++
Sbjct: 459 CPEDMRTQPIHEDPVLGNMAR-------------------------KAAPLASFPNMEAL 493
Query: 488 CGADSQGKQMALKLGLTLPSSCYATMAIRELLK 520
L++ TL S YATM +REL+K
Sbjct: 494 ---------KVLEMKFTLKSGQYATMMLRELIK 517
>gi|350588940|ref|XP_003130307.3| PREDICTED: pseudouridylate synthase 7 homolog [Sus scrofa]
Length = 575
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 111/389 (28%), Positives = 173/389 (44%), Gaps = 105/389 (26%)
Query: 146 FINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKETDD 204
+Y G + + +V V +L+ W + +IL PR G E+ + K RE + +T D
Sbjct: 285 IFSYMGTKDKRAITVQEIAVLKAILQNSWTEVMDLILKPRSGAEKGYLVKCREEWAKTKD 344
Query: 205 IDGTLRKLPRHLVAERAILQCLKKCP-GNYLQALKAIPRTLRMMYVHSYQSFLWNHAASA 263
LRKLP E +L+ L K N + A IPR R+MY+HSYQS++WN+ S
Sbjct: 345 PAAALRKLPVKRCVEGQLLRGLSKYGMKNIVSAFGIIPRNNRLMYIHSYQSYVWNNMVSK 404
Query: 264 RVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGR 323
R++++G + V GDLV KG +++++E
Sbjct: 405 RIEEYGLKP-VPGDLVL-KG----------------------ATATYIEE---------- 430
Query: 324 HNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNV 383
D+N+ Y+I DVV+PLPG +IYP + ++E Y + D +++ H +
Sbjct: 431 ---------EDVNN--YSIHDVVMPLPGFDIIYPKHKISEAYREMLTADNLDIDNMRHKI 479
Query: 384 KEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVC 443
+++ S++G YR++ +P + WE++ Y D PL TD+D +
Sbjct: 480 RDY---SLSGAYRKIIIRPQNVSWEVVAYDDPKIPLFNTDVDNL---------------- 520
Query: 444 GNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGL 503
E K P V + S+GK ALK+
Sbjct: 521 ----------------------------------EGKPPPVFA-----SEGKYRALKMDF 541
Query: 504 TLPSSCYATMAIRELLKTSTSVAFHKTLN 532
+LP S YATMAIRE+LK TS+ LN
Sbjct: 542 SLPPSTYATMAIREVLKMDTSIKKQTQLN 570
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 40/59 (67%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFK 81
+WP+ G + F LYKENKDT +A+ L+SK L + P F + GTKDKR+++ Q + V K
Sbjct: 248 SWPKSRGSYCHFVLYKENKDTMDAINLLSKYLRVKPNIFSYMGTKDKRAITVQEIAVLK 306
>gi|405969826|gb|EKC34774.1| Pseudouridylate synthase 7-like protein [Crassostrea gigas]
Length = 367
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 115/348 (33%), Positives = 164/348 (47%), Gaps = 76/348 (21%)
Query: 186 EGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKC-PGNYLQALKAIPRTL 244
+ E++ I++ R+ + + + L+ LPR ERA+L+ L K NY A + I R
Sbjct: 68 DSEKDFITECRKNWWKDKNCTQMLKVLPRKYNIERALLEGLIKFGENNYANAFQMIHRNT 127
Query: 245 RMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSND 304
RM+Y+H YQS++WNH AS R++K G E +VGDLV+ KGD + N + S +
Sbjct: 128 RMLYLHGYQSYIWNHVASDRIKKFGMEP-MVGDLVY-KGDLKDVAFKEENRQSSANGSLE 185
Query: 305 ADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEV 364
+S PE VTA ++ +YTI DV+LPLPG V YP N+V
Sbjct: 186 GGSTSSRVS-PE------------VVTAETLS--QYTIHDVILPLPGFDVQYPDNEVGMW 230
Query: 365 YHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDL 424
Y L +DG+ L + H+ K + ++ G YRR+ P D W+ Y D K L ++DL
Sbjct: 231 YAKLMAEDGLKLEDLKHSNKNY---ALPGTYRRLIILPKDLMWQSYMYSDVTKELTQSDL 287
Query: 425 DKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHV 484
D + K+ E V DP +K
Sbjct: 288 DLLQ--------KKTEPVS-----DPDGTIK----------------------------- 305
Query: 485 ESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
ALK+ L+LP SCYATMA+RE+LK TS A+ TLN
Sbjct: 306 -------------ALKIELSLPQSCYATMALREILKIDTSAAYQATLN 340
>gi|449530500|ref|XP_004172233.1| PREDICTED: multisubstrate pseudouridine synthase 7-like, partial
[Cucumis sativus]
Length = 126
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 78/126 (61%), Positives = 93/126 (73%), Gaps = 2/126 (1%)
Query: 248 YVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDAD- 306
YVHSYQS+LWNHAAS RVQK+G + VVVGDLV+CK + TE + E+E E DA+
Sbjct: 1 YVHSYQSYLWNHAASMRVQKYGIDKVVVGDLVYCKENHTETAAVQNSEEYEDEDCGDANS 60
Query: 307 -DSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVY 365
DS HL+EV + P RH LVK VTA D+ SG +TIDDVVLPLPGSRV+YP ND+AEVY
Sbjct: 61 YDSCHLEEVCKLGLPTERHKLVKAVTAGDVLSGNFTIDDVVLPLPGSRVLYPTNDIAEVY 120
Query: 366 HHLAEK 371
+ LA K
Sbjct: 121 NDLATK 126
>gi|73670655|ref|YP_306670.1| tRNA pseudouridine synthase D [Methanosarcina barkeri str. Fusaro]
gi|91208116|sp|Q466V2.1|TRUD_METBF RecName: Full=Probable tRNA pseudouridine synthase D; AltName:
Full=tRNA pseudouridine(13) synthase; AltName: Full=tRNA
pseudouridylate synthase D; AltName: Full=tRNA-uridine
isomerase D
gi|72397817|gb|AAZ72090.1| putative tRNA pseudouridine synthase D [Methanosarcina barkeri str.
Fusaro]
Length = 438
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 91/264 (34%), Positives = 145/264 (54%), Gaps = 8/264 (3%)
Query: 27 QLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASK 86
Q GK+L L K + DT ++K+L + + AGTKDKR+++TQ++++F A K
Sbjct: 45 QEGKYLILELIKRDWDTHHLTRTLAKILQVSQKRISVAGTKDKRALTTQKISIFDIDAQK 104
Query: 87 LAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIK----ASANSLG 142
+ ++ L + L ++ + LG L GN F IT+R + SE++ K + L
Sbjct: 105 IEKIH--LKDVELKVLGRSRKSVELGDLWGNNFRITIRNITHSSEEIHKLLEKTTNEILA 162
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEW-KSAVKMILDPREGERNEISKAREYYKE 201
+NG N+FG+QRFGS THLVG ++ G++ K+A+ I +P E + KAR++ KE
Sbjct: 163 QNGVPNFFGIQRFGSVRPVTHLVGKAIVEGDFEKAALLYIAEPFPDEPEDTRKARQFVKE 222
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAA 261
T D L+ P HL ERA++ L P ++ A +P+ L M+VH YQS+++N
Sbjct: 223 TLDFKEGLKIYPLHLGHERAMMNHLIANPDDFAGAFLVLPKNLYRMFVHGYQSYIYNIIL 282
Query: 262 SARVQKH-GTEHVVVGDLVFCKGD 284
R++K V GD+V K +
Sbjct: 283 CRRIEKGLSLNEAVEGDVVCFKNE 306
>gi|449702724|gb|EMD43310.1| tRNA pseudouridine synthase, putative [Entamoeba histolytica KU27]
Length = 634
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 118/397 (29%), Positives = 187/397 (47%), Gaps = 71/397 (17%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
L+ L K N DT +A+ ISK L + + FAG KDKR V+ Q +T+ + +
Sbjct: 223 ILKCVLRKSNIDTSDAILRISKALNLGKNAICFAGMKDKRGVTCQYITIPGVKQELIEEN 282
Query: 91 NKRLI--GIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
K+ I GI L F +V + LG LLGN F + +R VD+ D I + S+ G+IN
Sbjct: 283 LKKSICNGITLSQFEHVDHMIKLGDLLGNEFRVIIRE--VDNVDEILKNCESIKEFGYIN 340
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERN-EISKAREYYKETDDIDG 207
YFGLQRFGS THL+G LL+ E++ A +++ +EG +++ ++YYKE
Sbjct: 341 YFGLQRFGSCGT-THLIGKALLKEEYQEAADLMM--KEGNDTFSVAQGKKYYKE-QQYKL 396
Query: 208 TLRKLPRHLVAERAILQCLKK--------CPGNYLQAL-KAIPRTLRMMYVHSYQSFLWN 258
+P E+A++Q L K G + A+ A+ + +Y+H+YQS++WN
Sbjct: 397 AYEVIPIKRNIEKALMQALYKQVKLGVSISNGMFKTAIDNAVVYKTKSLYLHAYQSYVWN 456
Query: 259 HAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETD 318
S R +K+G V+VGDL YE+ +D V E
Sbjct: 457 QVVSKRFEKYGNV-VLVGDL--------------------YETKQGT-----IDFVTEEL 490
Query: 319 HPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINL-- 376
P + V++PLP RV P N++ + + KDG L
Sbjct: 491 LPS------------------ICLHQVIIPLPAHRVTMPKNEIKNFFDEVLSKDGFTLDT 532
Query: 377 -TESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTY 412
++NV ++TG+ R++ +P E++++ Y
Sbjct: 533 FPTRIYNV------AITGDQRKIVIQPKGVEYQIVHY 563
>gi|67478716|ref|XP_654740.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
gi|56471812|gb|EAL49354.1| hypothetical protein, conserved [Entamoeba histolytica HM-1:IMSS]
Length = 634
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 118/397 (29%), Positives = 187/397 (47%), Gaps = 71/397 (17%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
L+ L K N DT +A+ ISK L + + FAG KDKR V+ Q +T+ + +
Sbjct: 223 ILKCVLRKSNIDTSDAILRISKALNLGKNAICFAGMKDKRGVTCQYITIPGVKQELIEEN 282
Query: 91 NKRLI--GIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
K+ I GI L F +V + LG LLGN F + +R VD+ D I + S+ G+IN
Sbjct: 283 LKKSICNGITLSPFEHVDHMIKLGDLLGNEFRVIIRE--VDNVDEILKNCESIKEFGYIN 340
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERN-EISKAREYYKETDDIDG 207
YFGLQRFGS THL+G LL+ E++ A +++ +EG +++ ++YYKE
Sbjct: 341 YFGLQRFGSCGT-THLIGKALLKEEYQEAADLMM--KEGNDTFSVAQGKKYYKE-QQYKL 396
Query: 208 TLRKLPRHLVAERAILQCLKK--------CPGNYLQAL-KAIPRTLRMMYVHSYQSFLWN 258
+P E+A++Q L K G + A+ A+ + +Y+H+YQS++WN
Sbjct: 397 AYEVIPIKRNIEKALMQALYKQVKLGVSISNGMFKTAIDNAVVYKTKSLYLHAYQSYVWN 456
Query: 259 HAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETD 318
S R +K+G V+VGDL YE+ +D V E
Sbjct: 457 QVVSKRFEKYGNV-VLVGDL--------------------YETKQGT-----IDFVTEEL 490
Query: 319 HPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINL-- 376
P + V++PLP RV P N++ + + KDG L
Sbjct: 491 LPS------------------ICLHQVIIPLPAHRVTMPKNEIKNFFDEVLSKDGFTLDT 532
Query: 377 -TESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTY 412
++NV ++TG+ R++ +P E++++ Y
Sbjct: 533 FPTRIYNV------AITGDQRKIVIQPKGVEYQIVHY 563
>gi|339235795|ref|XP_003379452.1| microfibrillar-associated protein 1 [Trichinella spiralis]
gi|316977882|gb|EFV60926.1| microfibrillar-associated protein 1 [Trichinella spiralis]
Length = 857
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 77/178 (43%), Positives = 110/178 (61%), Gaps = 5/178 (2%)
Query: 17 DSRGSENWP-EQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQ 75
+ R + WP ++ G+ F +YKEN D+ A+ I+K+L I P++ AGTKD+R+V+TQ
Sbjct: 541 NKRKRQIWPSDREGEHCHFVIYKENTDSNVAIAKIAKLLRISPKTICIAGTKDRRAVTTQ 600
Query: 76 RVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIK 135
R + ++ A +L LN RL G+R+G+ Y G+ LG L GNRFTI LR V ++ D I+
Sbjct: 601 RASAYRLEAGQLLQLNNRLHGVRVGNCAYKPNGIFLGDLNGNRFTIVLRN-VKENTDFIE 659
Query: 136 ASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEIS 193
GFINY+G QRFG+G V TH VG +L +WK A +++L P NEIS
Sbjct: 660 ECIKQWKEVGFINYYGAQRFGTGPVHTHEVGKLMLHRKWKEAAELLLQPHS---NEIS 714
>gi|405960541|gb|EKC26458.1| Pseudouridylate synthase 7-like protein [Crassostrea gigas]
Length = 277
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 112/325 (34%), Positives = 152/325 (46%), Gaps = 76/325 (23%)
Query: 209 LRKLPRHLVAERAILQCLKKC-PGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQK 267
L+ LPR ERA+L+ L K NY A + I R RM+Y+H YQS++WNH AS R++K
Sbjct: 2 LKVLPRKYNIERALLEGLIKFGENNYANAFQMIHRNTRMLYLHGYQSYIWNHVASDRIKK 61
Query: 268 HGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLV 327
G E +VGDLV+ KGD + N + S + +S PE
Sbjct: 62 FGMEP-MVGDLVY-KGDLKDVAFKEENRQSSANGSLEGGSTSS-RVSPE----------- 107
Query: 328 KTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFS 387
VTA ++ +YTI DV+LPLPG V YP N+V Y L +DG+ L + H+ K +
Sbjct: 108 -VVTAETLS--QYTIHDVILPLPGFDVQYPDNEVGLWYAKLMAEDGLKLEDLKHSNKNY- 163
Query: 388 ITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKE 447
++ G YRR+ P D W+ Y D K L ++DLD + K+ E V
Sbjct: 164 --ALPGTYRRLIILPKDLMWQSYMYSDVTKELTQSDLDLLQ--------KKPEPVS---- 209
Query: 448 KDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPS 507
DP +K ALK+ L+LP
Sbjct: 210 -DPDGTIK------------------------------------------ALKIELSLPQ 226
Query: 508 SCYATMAIRELLKTSTSVAFHKTLN 532
SCYATMA+RE+LK TS A+ TLN
Sbjct: 227 SCYATMALREILKIDTSAAYQATLN 251
>gi|428175577|gb|EKX44466.1| hypothetical protein GUITHDRAFT_109589 [Guillardia theta CCMP2712]
Length = 611
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 109/339 (32%), Positives = 169/339 (49%), Gaps = 26/339 (7%)
Query: 30 KFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAA 89
K+L F L K DT + I+ L + RSF FAG KDK ++ Q V + S+L
Sbjct: 270 KYLSFILAKSGWDTTTLVNKIASYLKVNARSFTFAGLKDKSGITEQEVRSYGIAPSRLLG 329
Query: 90 LNK-RLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGV-VVDSEDVIKASANSLGRNGFI 147
LN ++ G+ LG+F YV+ L GQ GNRF I LR + + ++ + + R GFI
Sbjct: 330 LNDGKMKGVLLGNFKYVESPLRFGQHGGNRFEILLRHIRPLREPSMLNKTMEEISRRGFI 389
Query: 148 NYFGLQRFGSGS---VPTHLVGATLLRGEWKSAVKMILDP-----REGERNEISKAREYY 199
NYFG QRFG+ + +P+ VG L + +W+SAV L P ER KA+ Y
Sbjct: 390 NYFGHQRFGNSAASMMPSIAVGKLLSKEDWESAVSETLRPPSLSCSPNER----KAKLMY 445
Query: 200 KETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNH 259
+ D+D L+ +P + ER +LQ LK AL ++P ++ +Y S +WN
Sbjct: 446 AKHKDVDEALKLMPGYCHDERVLLQALKDGKSAKEAAL-SMPHA--RLFKFAYWSRVWNL 502
Query: 260 AASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDH 319
AS R ++ EH V GD+V + D + E + Y + D +++ + + ++
Sbjct: 503 MASERARRMSMEHAVEGDIVLVRKDRNKSEAILTSHFSSY--TKDGENTMRFN-ISNSNA 559
Query: 320 PDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPM 358
P+ + VTA + + I +VVLP+ V YP+
Sbjct: 560 PE-----IHFVTAKEEKEAAFGISEVVLPMVDEEV-YPV 592
>gi|390960526|ref|YP_006424360.1| putative tRNA pseudouridine synthase [Thermococcus sp. CL1]
gi|390518834|gb|AFL94566.1| putative tRNA pseudouridine synthase [Thermococcus sp. CL1]
Length = 415
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 140/249 (56%), Gaps = 10/249 (4%)
Query: 34 FHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKR 93
F L K N DT A+ I+K GI R GFAGTKD+ +V+ Q V+V + K+ +L R
Sbjct: 49 FLLKKRNWDTMTAVKEIAKRAGISHREIGFAGTKDRHAVTYQYVSVPAEAREKVESLRIR 108
Query: 94 LIGIRLGDFCYVKEG--LLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG-RNGFINYF 150
I + +V G + LG LLGNRF I +R V + + K L + GF NYF
Sbjct: 109 DI-----ELTFVGYGRFIKLGHLLGNRFRIIVRDVGEGAFERTKEIVRELREKGGFPNYF 163
Query: 151 GLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDDIDGTLR 210
G QRFG V HLVG LL+GE++ A ++ L +G E +AR+ + ET D+D L
Sbjct: 164 GYQRFGERRVVNHLVGKLLLQGEFEEAARLFLGYADGS-MEGDEARKTFWETGDVDRALE 222
Query: 211 KLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGT 270
+ PR L ER +L KK G++ +A ++P + +++HSYQS+L+N S R+++
Sbjct: 223 EFPRFLRYERTLLHTYKKT-GSWKKAFLSLPLPIMRIFIHSYQSYLFNLYLSRRIEELPL 281
Query: 271 EHVVVGDLV 279
+VGD+V
Sbjct: 282 NEALVGDVV 290
>gi|88602101|ref|YP_502279.1| pseudouridylate synthase [Methanospirillum hungatei JF-1]
gi|88187563|gb|ABD40560.1| Pseudouridylate synthase [Methanospirillum hungatei JF-1]
Length = 422
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 120/397 (30%), Positives = 183/397 (46%), Gaps = 60/397 (15%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G +L L + N D A+ I+ LGI + GFAGTKDKR+V+TQ ++++K +A ++A
Sbjct: 48 GPYLICSLNRRNWDQHRAIKAIASGLGISHQRIGFAGTKDKRAVTTQFISIYKIKAEEIA 107
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRN---G 145
L+ + I L + + LG L GN F I +R + S+ + S S ++ G
Sbjct: 108 RLS--IPDITLTALGTSQHPIKLGDLQGNSFAIRIRKI---SDSSLLTSLESFQKSIKEG 162
Query: 146 FINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVK-MILDPREGERNEISKAREYYKETDD 204
NY G QRFG THL+G +L+G ++ AV+ MI P + + R Y ET+D
Sbjct: 163 IPNYVGYQRFGVSRPVTHLIGFEILKGNYQEAVRVMIGKPGSQMEDHEQEGRACYLETED 222
Query: 205 IDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASAR 264
L LP L ER++L L + PG+YL A+ +PRTLR MYV + QS+++N S R
Sbjct: 223 AARCLHLLPPRLSLERSVLHHLVRYPGDYLGAILQLPRTLRSMYVSAVQSWIFNTTLSMR 282
Query: 265 VQK-HGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGR 323
++ H VGD + PDGR
Sbjct: 283 IRDGHSLFEPEVGDYLIW--------------------------------------PDGR 304
Query: 324 HNLVKTVTAADINSGKYTID----DVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTES 379
+ +T A I++ K + + L LPG I H + E+ GI+ ++
Sbjct: 305 TD---KITPATIHAAKVQLKRGTCALALVLPGGSYISDAGPDDRNIHTVLEEKGIS-SQM 360
Query: 380 LHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGN 416
V T G++R + K D +E+ IDG+
Sbjct: 361 FEKVSSVLDTKFAGSFRPMLMK-TDLTYEI---IDGD 393
>gi|260799571|ref|XP_002594768.1| hypothetical protein BRAFLDRAFT_224169 [Branchiostoma floridae]
gi|229280004|gb|EEN50779.1| hypothetical protein BRAFLDRAFT_224169 [Branchiostoma floridae]
Length = 274
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 112/375 (29%), Positives = 164/375 (43%), Gaps = 108/375 (28%)
Query: 163 HLVGATLLRGEWKSAVKMILDPREG-ERNEISKAREYYKETDDIDGTLRKLPRHLVA--- 218
H + LL +W+ A+++IL PREG +S R+Y+ +T D G L +PR ++
Sbjct: 1 HFLHRALLHSKWEEAIELILKPREGGTEGAVSACRDYWWKTRDAKGALEMMPRRNMSKDI 60
Query: 219 ERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDL 278
E +L+ L K + + AL IPR R+MYVHSYQSF+WN+ S R+Q++G + + GDL
Sbjct: 61 EGRLLEGLVKNGKDLVGALSNIPRNTRLMYVHSYQSFIWNNIVSRRLQEYGFQP-IAGDL 119
Query: 279 VFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSG 338
V E+E K +T D+ G
Sbjct: 120 VL-----EERE-------------------------------------AKVLTEEDL--G 135
Query: 339 KYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRV 398
YTI DVV PL G VIYP + E Y + D +++ H VK++ S++G YR++
Sbjct: 136 NYTIHDVVFPLFGYDVIYPKHKAEEWYREMLSVDQLDMDNIRHKVKDY---SLSGAYRKI 192
Query: 399 FQKPMDFEWELLTYIDGNK-PLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQS 457
KP + +W++ + + PL TD D ++ +EA + E
Sbjct: 193 IVKPTNCKWQVCYKVQSCRIPLMLTDKD---------VLDGKEAPLASSE---------- 233
Query: 458 ESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRE 517
GK ALK+ TLP S YATMA+RE
Sbjct: 234 ------------------------------------GKMKALKVEFTLPPSTYATMALRE 257
Query: 518 LLKTSTSVAFHKTLN 532
+LKT TS LN
Sbjct: 258 ILKTDTSSGHQALLN 272
>gi|431901426|gb|ELK08452.1| Pseudouridylate synthase 7 like protein-like protein [Pteropus
alecto]
Length = 671
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 115/397 (28%), Positives = 180/397 (45%), Gaps = 89/397 (22%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
+ F L KEN + EA+G ++ LG++ F +AG KDK++++ Q + V K +L +
Sbjct: 302 YTAFTLRKENMEMFEAVGFLAIKLGVISSDFSYAGLKDKKAITYQAMVVRKVTPERLKNI 361
Query: 91 NKRLIGIRLGDFCY--VKEGLLLGQLLGNRFTITLRGV---VVDS----EDVIKASANSL 141
K + R+ F V + L LGQL GN F I +R + + DS E +++A N +
Sbjct: 362 EKEIEKKRMNVFNIRSVDDSLRLGQLKGNHFDIVIRNLKTQINDSANLRERILEAIEN-V 420
Query: 142 GRNGFINYFGLQRFGSG-SVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYK 200
GF+NY+G QRFG G V T +G LL+
Sbjct: 421 KNKGFVNYYGPQRFGIGRRVHTDQIGLALLK----------------------------- 451
Query: 201 ETDDIDGTLRKLPRHLVAERAILQCLKK---CPGNYLQALKAIPRTLRMMYVHSYQSFLW 257
+D GTL +P V ERA+L+ L + +QA A P ++R+ YVH+Y S +W
Sbjct: 452 --EDAKGTLSLMPEFKVRERALLESLHRFGMTEEGCVQAWFAFPHSMRIFYVHAYSSKIW 509
Query: 258 NHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPET 317
N A S R+ +G VV GDLV C++ D DD L+
Sbjct: 510 NEAVSYRLATYGP-RVVEGDLV------------CLD--------EDGDDEHFLN----- 543
Query: 318 DHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLT 377
+ V VT + ++ Y I VVLP+ G + YP N V Y + +DG+
Sbjct: 544 -------SKVHLVTEEEESANTYAIHQVVLPVLGYNIQYPKNKVGLWYQEVLHRDGLQTC 596
Query: 378 ESLHNVKEFSITSMT----GNYRRVFQKPMDFEWELL 410
F + ++ G YR++ ++P + ++L+
Sbjct: 597 -------RFRVPTLKLNVPGCYRKILKQPHNLSYQLI 626
>gi|407037721|gb|EKE38766.1| tRNA pseudouridine synthase D protein [Entamoeba nuttalli P19]
Length = 634
Score = 145 bits (365), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 115/397 (28%), Positives = 186/397 (46%), Gaps = 71/397 (17%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
L+ L K N DT +A+ ISK L + + FAG KDKR V+ Q +T+ + +
Sbjct: 223 ILKCVLRKSNIDTGDAILRISKALNLGKNAICFAGMKDKRGVTCQYITIPGVKQELIEEN 282
Query: 91 NKRLI--GIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
K+ I GI L F +V + LG LLGN F + +R +D+ D + + S+ G+IN
Sbjct: 283 LKKSICNGITLSQFEHVDHMIKLGDLLGNEFRVIIRE--IDNVDEVLKNCESIKEFGYIN 340
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERN-EISKAREYYKETDDIDG 207
YFGLQRFGS THL+G LL+ E++ A +++ +EG +++ ++YYKE
Sbjct: 341 YFGLQRFGSCGT-THLIGKALLKEEYQEAADLMM--KEGNDTFSVAQGKKYYKE-HQYKL 396
Query: 208 TLRKLPRHLVAERAILQCLKK--------CPGNYLQAL-KAIPRTLRMMYVHSYQSFLWN 258
+P E+A++Q L K G + A+ A+ + +Y+H+YQS++WN
Sbjct: 397 AYEVIPIKRNIEKALMQALYKQVKLGVSISNGMFKTAIDNAVVYKTKSLYLHAYQSYVWN 456
Query: 259 HAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETD 318
S R +K+G V+VGDL YE+ +D V E
Sbjct: 457 QVVSKRFEKYGNV-VLVGDL--------------------YETKQGT-----IDFVTEEL 490
Query: 319 HPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINL-- 376
P + V++PLP V P N++ + + KDG L
Sbjct: 491 LPS------------------ICLHQVIIPLPAHGVTMPKNEIKNFFDEVLSKDGFTLDT 532
Query: 377 -TESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTY 412
++NV ++TG+ R++ +P E++++ Y
Sbjct: 533 FPTRIYNV------AITGDQRKIVIQPKGVEYQIIHY 563
>gi|321469714|gb|EFX80693.1| hypothetical protein DAPPUDRAFT_103224 [Daphnia pulex]
Length = 752
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 143/537 (26%), Positives = 232/537 (43%), Gaps = 108/537 (20%)
Query: 30 KFLRFHLYKENKDTQEALGLISKMLGILPR--------SFGFAGTKDKRSVSTQRVTVFK 81
K F + KEN +EAL LI K+ P+ S +D+RS+++Q VT+
Sbjct: 106 KLTEFVMCKENMTMKEAL-LILKISDGTPKLKMERNMTSETIDRCQDRRSITSQLVTIRN 164
Query: 82 QR--ASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASAN 139
+ +L K I +G+F V + + G L GNRF + LR V+ ++ +
Sbjct: 165 ENFNVERLCRELKCQSNIAVGNFRLVHKRVKQGHLTGNRFIMALRNVIGYKHHIV-SKLE 223
Query: 140 SLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILD----------PREGER 189
SL GFINY G + + + P L+G +L EW++ ++ + P E ++
Sbjct: 224 SLKNVGFINYNGNKCYVNA--PMQLIGKNVLLQEWQTVFHLLSELPVSALMSDLPVEFKQ 281
Query: 190 -NEISKAR--------EYYKETDDIDGTLRKLPRHLVAE--RAILQCLKKCPGNYLQALK 238
+ I AR + K+ D +LR + LV + + +L N ++
Sbjct: 282 FHNIPLARLVDYTLPQKVRKDIQIFDKSLRPI---LVEDVRKFVLNLKSHNNHNSDITME 338
Query: 239 AIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFE 298
IP +R+ + +YQ FLW+ S R+ K G + + GDLV+ D ++ V E
Sbjct: 339 TIPAKIRLFCIIAYQRFLWDAVVSKRIAKFGLKPIA-GDLVYVSVSDGGED-DVVQVEAN 396
Query: 299 YESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPM 358
+ SSN D D H K + + N Y+I D+VLPLPG +++P+
Sbjct: 397 HLSSNYTGDD---------DESSNSHQ-SKVIFVSKNNLHNYSIHDIVLPLPGYNILHPV 446
Query: 359 NDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGN----YRRVFQKPMDFEWELLTYID 414
N+VA Y L DG++ T+ + K+F++ ++ N YR + KP D +W Y D
Sbjct: 447 NEVAGWYKDLLLADGLSETDFERSDKDFALENLAYNFSATYRPLILKPSDVKWRFERYND 506
Query: 415 GNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAA 474
++ L +DLD+ MK ++ L
Sbjct: 507 KSRSLIPSDLDR---------------------------MKNTQLL-------------- 525
Query: 475 CAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTL 531
C A G+ +AL L L+LP+S +MA+RE+ KT S F +L
Sbjct: 526 -------------CSAVKGGRYLALILELSLPTSSNVSMALREITKTDMSAEFQTSL 569
>gi|240103934|ref|YP_002960243.1| tRNA pseudouridine synthase D [Thermococcus gammatolerans EJ3]
gi|259550598|sp|C5A1W0.1|TRUD_THEGJ RecName: Full=Probable tRNA pseudouridine synthase D; AltName:
Full=tRNA pseudouridine(13) synthase; AltName: Full=tRNA
pseudouridylate synthase D; AltName: Full=tRNA-uridine
isomerase D
gi|239911488|gb|ACS34379.1| tRNA pseudouridylate synthase D (TruD) [Thermococcus gammatolerans
EJ3]
Length = 415
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 91/247 (36%), Positives = 136/247 (55%), Gaps = 6/247 (2%)
Query: 34 FHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKR 93
F L K N DT + I+K GI R GFAGTKD+ +V+ Q ++V K+ ++ R
Sbjct: 49 FLLKKRNWDTMAVIKEIAKRAGISHRDIGFAGTKDRHAVTYQYISVPAGAKEKVESIQIR 108
Query: 94 LIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG-RNGFINYFGL 152
+ +R F + LG LLGNRF I +R V + D K L + GF NYFG
Sbjct: 109 DVELR---FVSYGRFIKLGHLLGNRFRIIIRDVEGSAFDRTKEIIRELREKGGFPNYFGY 165
Query: 153 QRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDDIDGTLRKL 212
QRFG V HL+G LL+GE+ A ++ L +G E +AR + ET+D+D L +
Sbjct: 166 QRFGERRVVNHLIGKLLLQGEFDEAARLFLGYADGS-MEGDEARRNFWETEDVDRALEEF 224
Query: 213 PRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEH 272
PR L ER +L KK G++ +A ++P + +++H+YQS+L+N S R+++
Sbjct: 225 PRFLRYERTLLYTYKKT-GSWKKAFLSLPLPIMRIFIHAYQSYLFNLYLSRRIEELPLNE 283
Query: 273 VVVGDLV 279
+VGD+V
Sbjct: 284 PLVGDIV 290
>gi|223477770|ref|YP_002582429.1| tRNA pseudouridine synthase D [Thermococcus sp. AM4]
gi|214032996|gb|EEB73824.1| tRNA pseudouridine synthase D [Thermococcus sp. AM4]
Length = 415
Score = 144 bits (364), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 92/247 (37%), Positives = 138/247 (55%), Gaps = 6/247 (2%)
Query: 34 FHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKR 93
F L K N DT + I+K GI R GFAGTKD+ +V+ Q ++V + K+ ++ R
Sbjct: 49 FLLKKRNWDTMAVIKEIAKRAGISHRDIGFAGTKDRHAVTYQYISVPAEAKEKVESVQIR 108
Query: 94 LIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG-RNGFINYFGL 152
I +R F + LG LLGNRF I +R V D+ + K + L + GF NYFG
Sbjct: 109 DIELR---FVSYGRFIKLGHLLGNRFRIIVRDVEEDAFERAKEIIHELREKGGFPNYFGY 165
Query: 153 QRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDDIDGTLRKL 212
QRFG V HL+G LLRGE++ A ++ L +G E +AR+ + ET D+D L +
Sbjct: 166 QRFGERRVVNHLIGKLLLRGEFEEAARLFLGYADGS-MEGDEARKNFWETGDVDRALEEF 224
Query: 213 PRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEH 272
PR L ER +L KK G++ +A ++P + +++H+YQS+L+N R ++
Sbjct: 225 PRFLRYERTLLYTYKKT-GSWRKAFLSLPLPIMRIFIHAYQSYLFNLYLPRRSEELPLNE 283
Query: 273 VVVGDLV 279
+VGD+V
Sbjct: 284 PLVGDVV 290
>gi|410964169|ref|XP_003988628.1| PREDICTED: LOW QUALITY PROTEIN: pseudouridylate synthase 7
homolog-like protein [Felis catus]
Length = 719
Score = 144 bits (364), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 102/345 (29%), Positives = 170/345 (49%), Gaps = 55/345 (15%)
Query: 105 VKEGLLLGQLLGNRFTITLRGV---VVDS---EDVIKASANSLGRNGFINYFGLQRFGSG 158
+ + L LGQL GN F I +R + + DS +D I + ++ GF+NY+G QRFG G
Sbjct: 396 IDDSLRLGQLKGNHFDIVIRNLKNQINDSANLKDRILEAIENVKNKGFVNYYGPQRFGMG 455
Query: 159 -SVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLV 217
V T +G LL+ E AVK+ L P + + + +++A++Y+ +T+D GTL +P V
Sbjct: 456 RKVHTDQIGLALLKSEMVEAVKLFLTPEDLD-DPVNRAKKYFLQTEDAKGTLSLMPEFKV 514
Query: 218 AERAILQCLKK---CPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVV 274
ERA+L+ L + +QA + P ++R+ YVH+Y S +WN A S R+ +G+ VV
Sbjct: 515 RERALLESLHRFGMTEEGCIQAWFSFPHSMRIFYVHAYSSKIWNEAVSYRLGTYGSR-VV 573
Query: 275 VGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAAD 334
GDLV C G+D + E P +N V VT +
Sbjct: 574 EGDLV-CLGEDVDDE-----------------------HFP--------NNKVHLVTEEE 601
Query: 335 INSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMT-- 392
++ Y I VVLP+ G + YP N V + Y + +DG+ F + ++
Sbjct: 602 ESANTYAIHQVVLPVLGYNIQYPKNKVGQWYQEILSRDGLQTC-------RFKVPTLKLN 654
Query: 393 --GNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNI 435
G YR++ + P + ++L D + + + +D+ + L++
Sbjct: 655 VPGCYRQILKCPHNVSYQLKEEHDTDVKMEGSHIDEATLSLLISF 699
>gi|330508854|ref|YP_004385282.1| tRNA pseudouridine synthase D [Methanosaeta concilii GP6]
gi|328929662|gb|AEB69464.1| tRNA pseudouridine synthase D [Methanosaeta concilii GP6]
Length = 425
Score = 144 bits (364), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 92/260 (35%), Positives = 144/260 (55%), Gaps = 7/260 (2%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G++L + K + DT + +S+ L I + FG+AGTKDKR+++ QR+++ S+L
Sbjct: 48 GRYLVIEVEKTDWDTHHLIREMSRHLRISQKRFGWAGTKDKRAITRQRISIMNLDESELD 107
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVV-DSEDVIKASANSLGRN-GF 146
+ RL I++ + LG LLGNRF+IT+R + D + + + + R+ G
Sbjct: 108 RI--RLPDIKINVLGRTNRAVGLGDLLGNRFSITIRELSCPDPARSLASVSEEIKRHKGV 165
Query: 147 INYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILD-PREGERNEISKAREYYKETDDI 205
NYFG+QRFG THLVG L RG+ + A ++ L P GE+ +ARE E+ DI
Sbjct: 166 ANYFGVQRFGDIRPITHLVGEALARGKAEEAARIFLALPYAGEQERTREARERLWESGDI 225
Query: 206 DGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARV 265
P +L E A+L L + PG+Y + + L+ ++VH+YQS+L+N S R+
Sbjct: 226 QAARNDFPGYLHHELAMLNYLAEHPGDYAHSFDVLSVNLKRLFVHAYQSYLFNRILSLRL 285
Query: 266 QKH-GTEHVVVGDLV-FCKG 283
K + +VGD+V F KG
Sbjct: 286 AKSMPLDEALVGDVVCFSKG 305
>gi|11499267|ref|NP_070505.1| hypothetical protein AF1677 [Archaeoglobus fulgidus DSM 4304]
gi|37087859|sp|O28596.1|TRUD_ARCFU RecName: Full=Probable tRNA pseudouridine synthase D; AltName:
Full=tRNA pseudouridine(13) synthase; AltName: Full=tRNA
pseudouridylate synthase D; AltName: Full=tRNA-uridine
isomerase D
gi|2648873|gb|AAB89568.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
Length = 411
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 88/243 (36%), Positives = 139/243 (57%), Gaps = 6/243 (2%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G FL + K+N DT ++S LGI + FAGTKDKR+++ Q +++ + ++
Sbjct: 42 GDFLIIRVEKKNWDTLNFARVLSNALGISQKRISFAGTKDKRALTVQYFSIYGVKKEEIE 101
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+N L ++ Y + + LG LLGN F I + G D E + + + N L G N
Sbjct: 102 RVN--LKDAKIEVIGYARRAIQLGDLLGNFFRIRVYG-CRDGE-IFQETRNELMEKGTPN 157
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM-ILDPREGERNEISKAREYYKETDDIDG 207
+FGLQRFGS TH VG +L+ ++ A + + P EGE E+ K RE ET D
Sbjct: 158 FFGLQRFGSIRFITHEVGKLILQNNYEEAFWVYVAKPFEGENEEVRKIREILWETRDAKL 217
Query: 208 TLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQK 267
LR+LP++L ER +LQ L++ +AL ++P+ L+MM+VH+YQS+++N S R+++
Sbjct: 218 GLRELPKYLRYERNLLQKLREGKSEE-EALLSLPKNLKMMFVHAYQSYIFNRLLSERIRQ 276
Query: 268 HGT 270
G+
Sbjct: 277 FGS 279
>gi|253744494|gb|EET00699.1| Pseudouridylates U2 snRNA at position 35 [Giardia intestinalis ATCC
50581]
Length = 678
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 139/530 (26%), Positives = 236/530 (44%), Gaps = 88/530 (16%)
Query: 25 PEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSF-------GFAGTKDKRSVSTQRV 77
P K+ F L K DT +A ++ M+ +P+ F + GTKDKR V+ QRV
Sbjct: 172 PRPPEKYTHFVLEKAGLDTMQA---VTSMISRMPQQFRCKVNDFTYRGTKDKRGVTVQRV 228
Query: 78 TVFKQRASKLAALNKRLIGIRL--GDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIK 135
V S L+ + + G+ L GDF + E L LG LGN F + LRG+ + +
Sbjct: 229 CVRGVWPSILSNASIKSTGMYLQTGDFSFSSEALCLGAHLGNSFELILRGIPHTATSNLT 288
Query: 136 ASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILD--------PREG 187
SL GFINYFG QRFGSGS TH +GA +L G++ A+ M++ P +
Sbjct: 289 DRLLSLKSKGFINYFGHQRFGSGSTRTHHIGAAILAGQYSDALWMVISSTMECRFKPADM 348
Query: 188 ERNEISK--AREYYKETDDIDGTLRKLPRHLVAER----AILQCLKKCPGNYLQALKAIP 241
R+ A K++ + +L++L + R + ++ +K+ LK I
Sbjct: 349 SRDSFKNIMASIASKDSQLFEDSLKRLLDDVGRSRGPFASTIRLVKESMDPLAALLKHIS 408
Query: 242 RTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYES 301
++++ MY+H++Q++L+N AAS + K ++ +L K L +P + +
Sbjct: 409 KSMQTMYIHAFQAYLFNLAASRCIAK------IMDELASGKRGARTSYLLLNDPVYARTT 462
Query: 302 SNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVI------ 355
+ ++ HL ++A D+N +YT D+ LPL G++ I
Sbjct: 463 TTQIENKIHL------------------ISADDLNKEEYTFKDLALPLLGTKTIRLLSSA 504
Query: 356 ---YPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTY 412
+P + +A+VY A D + L N F S V P + +
Sbjct: 505 ASNFPQSLLADVYE--AYNDAL-----LSNGLSFDSFSTITQRTTV---PKELSSSFRAF 554
Query: 413 IDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNE 472
+ + +L+ + + +C + +D + ++ DI L+ ++
Sbjct: 555 V------------PVGDVRLLMVTPSDLQMCWIRHTSLTDILGVTD---MDI-LAGKHPH 598
Query: 473 AACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTS 522
A V P S+ G +++ + ++L L LPSS YAT +RELL T+
Sbjct: 599 AFSEVSVMDP--VSLSG-NTETEHISLALRFLLPSSAYATELLRELLGTA 645
>gi|20094114|ref|NP_613961.1| hypothetical protein MK0676 [Methanopyrus kandleri AV19]
gi|37089068|sp|Q8TXJ7.1|TRUD_METKA RecName: Full=Probable tRNA pseudouridine synthase D; AltName:
Full=tRNA pseudouridine(13) synthase; AltName: Full=tRNA
pseudouridylate synthase D; AltName: Full=tRNA-uridine
isomerase D
gi|19887112|gb|AAM01891.1| Uncharacterized conserved protein [Methanopyrus kandleri AV19]
Length = 400
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 103/275 (37%), Positives = 146/275 (53%), Gaps = 17/275 (6%)
Query: 34 FHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKR 93
F+L K + DT +A+ I++ L R FG AG KDKR+V++QRVTV LA L R
Sbjct: 55 FYLEKYDWDTMKAVRRIAQALRKHHRHFGIAGMKDKRAVTSQRVTVRGVPPGVLARL--R 112
Query: 94 LIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQ 153
+ +++ + L G L GNRF IT+RG V + LG G NY+GLQ
Sbjct: 113 IRDLKIVPMGRARRKLRPGDLWGNRFVITVRGAKVRRLPEALRTVRELG--GVPNYYGLQ 170
Query: 154 RFGSGSVPTHLVGATLLRGEWKSAVKMILD---PREGERNEISKAREYYKE-TDDIDGTL 209
RFGS TH+VG ++ +W+ AVK L PRE E +AR + KE + L
Sbjct: 171 RFGSRRPVTHVVGKYVVLEDWEKAVKTFLTLEYPRESP--EALEARRWLKEHWGEFKEAL 228
Query: 210 RKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHG 269
R+ P+ L ER IL+ L + P +Y+ A + +P +R M+VH+YQS+L+N S R+ +
Sbjct: 229 RRFPKFLDYERHILEHLARHPHDYINAFRRLPMWIRRMFVHAYQSYLFNRILSERIARGL 288
Query: 270 TEHVVVGDLVFCKGDDTEKELGCVN-PEFEYESSN 303
H V +GD T+ L V P F E S+
Sbjct: 289 PVHRPV------EGDVTQDGLPTVPLPGFRTELSD 317
>gi|167387645|ref|XP_001738247.1| tRNA pseudouridine synthase D [Entamoeba dispar SAW760]
gi|165898620|gb|EDR25438.1| tRNA pseudouridine synthase D, putative [Entamoeba dispar SAW760]
Length = 637
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 114/396 (28%), Positives = 182/396 (45%), Gaps = 69/396 (17%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
L+ L K N DT EA+ ISK L + + FAG KDKR V+ Q +T+ + +
Sbjct: 225 ILKCVLRKSNIDTGEAINRISKALNLGKNAICFAGMKDKRGVTCQYITIPGVKQELIEES 284
Query: 91 NKRLI--GIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
K+ I GI L F +V + LG LLGN F + +R +D+ D + + S+ + G+IN
Sbjct: 285 LKKSICNGITLSQFEHVNHMIKLGDLLGNEFRVIIRE--IDNVDEVLKNCESIKKFGYIN 342
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDDIDGT 208
YFGLQRFGS THL+G LL+ E++ A +++ +EG + Y +
Sbjct: 343 YFGLQRFGSCGT-THLIGKALLKEEYQEAADLMM--KEGNDTFSVAQGKKYYKEKQYKLA 399
Query: 209 LRKLPRHLVAERAILQCLKK--------CPGNYLQAL-KAIPRTLRMMYVHSYQSFLWNH 259
+P ERA++Q L K G + A+ AI + +Y+H+YQS++WN
Sbjct: 400 YEIIPIKRNIERALMQALDKQVKLGVSISNGMFKTAIDNAIVYKTKSLYLHAYQSYVWNQ 459
Query: 260 AASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDH 319
S R +K+G V+VGDL YE+ +D V E
Sbjct: 460 VVSKRFEKYGNA-VLVGDL--------------------YETKQGT-----IDFVTEELL 493
Query: 320 PDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINL--- 376
P + +++PLP + P N++ + + KDG L
Sbjct: 494 PS------------------ICLHQIIIPLPAQGITMPKNEIKNFFDEVLSKDGFILDTF 535
Query: 377 TESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTY 412
++NV ++TG+ R++ +P D E++++ Y
Sbjct: 536 PTKIYNV------AITGDQRKIVIQPKDVEYQVIHY 565
>gi|154150449|ref|YP_001404067.1| pseudouridylate synthase [Methanoregula boonei 6A8]
gi|153999001|gb|ABS55424.1| Pseudouridylate synthase [Methanoregula boonei 6A8]
Length = 423
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 96/272 (35%), Positives = 143/272 (52%), Gaps = 10/272 (3%)
Query: 15 PFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVST 74
P + +GS + G +L L K + + Q A+ I+K L I R G+AGTKD+ + +T
Sbjct: 41 PLEKKGSPS-----GPYLICRLTKTSWELQHAVKEIAKRLNISHRRIGWAGTKDRNARTT 95
Query: 75 QRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVI 134
Q ++++K ++AAL+ R I + + E L LG L GNRF I +R + D
Sbjct: 96 QLISIYKVTPEQVAALHLRDITLEV--LGQANEQLSLGDLTGNRFDIWIRDADPEDLDNR 153
Query: 135 KASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEIS- 193
S NYFGLQRFG TH +G +LRGE++ AV + NE++
Sbjct: 154 VVSVTEAAAIALPNYFGLQRFGVIRPLTHRIGEYILRGEYEQAVATYVGQAFPLENEVAR 213
Query: 194 KAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQ 253
+AR Y +T D L LP + ER++L L+ PG+Y AL+ +P L M+V ++Q
Sbjct: 214 RARTVYWDTRDPAAALSDLPVAMSFERSMLSYLQAHPGDYPGALRQLPPKLLSMFVSAFQ 273
Query: 254 SFLWNHAASARVQK-HGTEHVVVGD-LVFCKG 283
S+L+N+A S R+ H V GD L+F G
Sbjct: 274 SYLFNYALSHRLAAGHSLTGAVPGDRLIFANG 305
>gi|126179345|ref|YP_001047310.1| pseudouridylate synthase [Methanoculleus marisnigri JR1]
gi|125862139|gb|ABN57328.1| Pseudouridylate synthase [Methanoculleus marisnigri JR1]
Length = 423
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 91/243 (37%), Positives = 130/243 (53%), Gaps = 7/243 (2%)
Query: 26 EQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRAS 85
+Q G L L K N + Q A+ I+K LGI R +AGTKDK +V+TQ ++++ +
Sbjct: 46 DQNGPHLICLLTKTNWELQRAVKEIAKRLGISHRRIAWAGTKDKNAVTTQFISIYN--VT 103
Query: 86 KLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNG 145
A L I L + L LG L GNRF I +R + D +A + G
Sbjct: 104 PEAVEQVHLADISLEVVGRSQHPLSLGSLAGNRFDIVIRDCIEDGLPARVQAATEVASAG 163
Query: 146 FINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILD---PREGERNEISKAREYYKET 202
NY+GLQRFG THLVG +L+G+++ AV + + PRE E E +AR ++ ET
Sbjct: 164 IPNYYGLQRFGVVRPVTHLVGERILKGDYEGAVAIYIGRAYPRESE--EAQRARTHFTET 221
Query: 203 DDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAAS 262
D L LP + ERA+ L PG+Y AL+A+P L + V +YQS+L+N A S
Sbjct: 222 HDARAALADLPIWMTYERAMANHLVANPGDYAGALRALPPKLLSLLVSAYQSYLFNCALS 281
Query: 263 ARV 265
+R+
Sbjct: 282 SRI 284
>gi|15679525|ref|NP_276642.1| hypothetical protein MTH1529 [Methanothermobacter
thermautotrophicus str. Delta H]
gi|37087854|sp|O27572.1|TRUD_METTH RecName: Full=Probable tRNA pseudouridine synthase D; AltName:
Full=tRNA pseudouridine(13) synthase; AltName: Full=tRNA
pseudouridylate synthase D; AltName: Full=tRNA-uridine
isomerase D
gi|2622648|gb|AAB86003.1| conserved protein [Methanothermobacter thermautotrophicus str.
Delta H]
Length = 415
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 89/252 (35%), Positives = 139/252 (55%), Gaps = 11/252 (4%)
Query: 38 KENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGI 97
KE + T + L I++ L + R GFAG KDKR+V+ Q + V S++ A+ +R+ +
Sbjct: 48 KEGRTTLDVLLDIARELHLDRRRMGFAGMKDKRAVTRQWICVSNTAPSEVKAIEERIRNV 107
Query: 98 RLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSE-DVIKASANSLGRNGFINYFGLQRFG 156
+ ++ L +GQLLGNRF I +R +D + KA+ L G NY+G QRFG
Sbjct: 108 KFLRVTANEKKLRMGQLLGNRFRILIRDTEIDEPLETAKATLQELEDKGVPNYYGWQRFG 167
Query: 157 SGSVPTHLVGATLLRGEWKSAV-KMILDPREGERNEISKAREYYKETDDIDGTLRKLPRH 215
S THLVG L+ G+ K AV I +P EGE +S+AR Y + D++ +P
Sbjct: 168 SPRANTHLVGRALVHGDVKGAVDSYIGNPLEGESEIVSEARRAY-DRGDLEEAYELMPSS 226
Query: 216 LVAERAILQCLKK-------CPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKH 268
+ ER +L+ + + +Y++A+ A+P+ L+ M+VH+YQS+L+N A S R
Sbjct: 227 MRYERMMLRPMLRDLRRGEFSDESYVRAIHALPKPLKRMFVHAYQSYLFNRAVSERAALG 286
Query: 269 GTEHVVVGDLVF 280
H + GD+V
Sbjct: 287 INTH-IPGDIVI 297
>gi|159108016|ref|XP_001704282.1| Pseudouridylates U2 snRNA at position 35 [Giardia lamblia ATCC
50803]
gi|157432340|gb|EDO76608.1| Pseudouridylates U2 snRNA at position 35 [Giardia lamblia ATCC
50803]
Length = 678
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 152/572 (26%), Positives = 243/572 (42%), Gaps = 115/572 (20%)
Query: 2 GRNSKKRKERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPR-- 59
G + + K + P R SE K+ F L K DT +A+ IS + +LP+
Sbjct: 156 GEQTYRLKIQPQKPRVPRPSE-------KYTHFVLEKAGLDTMQAI--ISMVAKMLPQFR 206
Query: 60 ----SFGFAGTKDKRSVSTQRVTVFKQRASKLAA--LNKRLIGIRLGDFCYVKEGLLLGQ 113
F + GTKDKR + QRV S L+A +N + +++GDF + E L LG
Sbjct: 207 CKVNDFTYRGTKDKRGATVQRVCAKGVWPSVLSATSINSSGMYLQVGDFSFSSEPLHLGA 266
Query: 114 LLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGE 173
LGN F + LRG+ + + I ++L GFINYFG QRFGS S TH +GA +L G+
Sbjct: 267 HLGNSFELILRGIPHTATENIGRRLSTLKSQGFINYFGYQRFGSRSTGTHRIGAAILSGQ 326
Query: 174 WKSAVKMILDPR-EGERNEISKAREYYKET-------------DDIDGTLRKLPRHLVAE 219
+ A+ MI+ E + +K+ D + L + + A
Sbjct: 327 YSDALWMIVKSSIECKLKSTVTICSSFKDVMISIANKDAKMFEDSLPKLLDDAGKSMGAF 386
Query: 220 RAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLV 279
+ L+ +K+ LK +PR+++ MY+H++Q++L+N A S + + E
Sbjct: 387 TSTLRLVKEAKDPLRALLKHVPRSMQTMYIHAFQAYLFNLATSRCITRIKNE-------- 438
Query: 280 FCKGDDTEKELGCV---NPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADIN 336
+ E C+ +P + ++ D HL V+ D+
Sbjct: 439 -IANGKRKVETNCLLLNDPVYVRSATTRIGDKVHL------------------VSTDDLI 479
Query: 337 SGKYTIDDVVLPLPGSRVI---------YPMNDVAEVYHHLAEKDGINLTESLHNVKEFS 387
G Y ++D+ +PL G++ +P + +A+VY A KD + L N F
Sbjct: 480 KGTYALNDLAIPLLGTKTTQLLADAASKFPQSLLADVYE--AYKDAL-----LPNGLSFD 532
Query: 388 ITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKE 447
S T R + K EL + + P+ + L L+ + K+ E
Sbjct: 533 FLS-TMTRRIIVPK------ELSSLLRAFVPVGDIRL-------LIVMPKDLEM------ 572
Query: 448 KDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCG--------ADSQGKQMAL 499
C SL+ + ++ + A KQPHV S +DS+ +L
Sbjct: 573 -----CWIGHASLTDILGITDIDILAG-----KQPHVFSEVPTMEPFSTISDSKTDYRSL 622
Query: 500 KLGLTLPSSCYATMAIRELLKTSTSVAFHKTL 531
L +LPSS YAT +RELL T+ K+L
Sbjct: 623 ALRFSLPSSAYATEFLRELLGTTVDPDSQKSL 654
>gi|336477499|ref|YP_004616640.1| tRNA pseudouridine synthase D TruD [Methanosalsum zhilinae DSM
4017]
gi|335930880|gb|AEH61421.1| tRNA pseudouridine synthase D TruD [Methanosalsum zhilinae DSM
4017]
Length = 462
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 104/353 (29%), Positives = 176/353 (49%), Gaps = 38/353 (10%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
GK+L L K N DT + +S+ L I + GFAGTKDKR+ +TQ++++F + +
Sbjct: 71 GKYLILELTKHNWDTHHVVRELSRRLRISQKRIGFAGTKDKRAETTQKISIFDLNETDIE 130
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGV---VVDSEDVIKASANSLGRNG 145
N L + L + + LG L GN F IT+R + + ++++ + + +NG
Sbjct: 131 --NVHLKDVDLKVIGRSNKSIGLGDLTGNEFRITIRNIDHSKAELKEILSSITMEIDKNG 188
Query: 146 FI-NYFGLQRFGSGSVPTHLVGATLLRGEWK-SAVKMILDPREGERNEISKAREYYKETD 203
+ NYFG+QRFGS THLVG +L++G+ + +A+K I + E + AR + +T
Sbjct: 189 GVPNYFGIQRFGSLRPITHLVGESLVKGDSEEAALKYISMTFQDEPEDTKNARNFVADTR 248
Query: 204 DIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASA 263
+ L+ P HL ER ++ L PG+Y A +P LR M+VH+YQS+++N S
Sbjct: 249 NFIEGLKLYPHHLRYERTMMHHLVNEPGDYEGAFLILPENLRRMFVHAYQSYIFNRIISE 308
Query: 264 RVQKH-GTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDG 322
R+++ V GD+V C +++S D+S ++V E DG
Sbjct: 309 RMRRGLPLNQAVKGDVV-C-----------------FKNSAGLPDTSRTEKVSERT-IDG 349
Query: 323 RHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGIN 375
+NL++ A V PL G + ++ E+ + ++ G++
Sbjct: 350 INNLIRRKRAF-----------VTAPLIGYETEFSEDEPGEIERTIFDQTGVS 391
>gi|395646363|ref|ZP_10434223.1| tRNA pseudouridine synthase D [Methanofollis liminatans DSM 4140]
gi|395443103|gb|EJG07860.1| tRNA pseudouridine synthase D [Methanofollis liminatans DSM 4140]
Length = 423
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 96/264 (36%), Positives = 140/264 (53%), Gaps = 9/264 (3%)
Query: 25 PEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRA 84
P G +L L K N + Q A+ I+ LGI R +AGTKDK +V++Q ++++
Sbjct: 45 PSGSGPYLICRLQKRNWEHQHAMKTIASALGISHRRIAWAGTKDKNAVTSQYISIYGVEE 104
Query: 85 SKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRN 144
+ + L + I +R + L LG L GNRF IT+R A+ +
Sbjct: 105 AAVEELRIKDIVVR--PVGRNQHPLSLGLLEGNRFAITIRDCTAADTAATVAACTAAAAV 162
Query: 145 GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILD---PREGERNEISKAREYYKE 201
GF NYFGLQRFG THLVG +L+G++++AV + P E E E+ + R Y+E
Sbjct: 163 GFPNYFGLQRFGVVRPVTHLVGRHILQGDYEAAVMTYVALACPDEDE--EVRRIRTEYRE 220
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAA 261
T D + LPRHL ER++L L + P ++ ALK +P L M+V +YQS+L+N
Sbjct: 221 TLDAKAAIAALPRHLGFERSLLSRLAEAPEDHAGALKNLPPKLLSMFVSAYQSWLFNRVL 280
Query: 262 SARVQKH-GTEHVVVGD-LVFCKG 283
S R+ G + V GD L+F G
Sbjct: 281 SMRLADGVGLDDPVSGDRLLFENG 304
>gi|124485625|ref|YP_001030241.1| hypothetical protein Mlab_0803 [Methanocorpusculum labreanum Z]
gi|124363166|gb|ABN06974.1| tRNA pseudouridine synthase D, TruD [Methanocorpusculum labreanum
Z]
Length = 422
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 116/379 (30%), Positives = 178/379 (46%), Gaps = 56/379 (14%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G + L K + + Q A+ I+ L I + G+AGTKDK +V+TQ ++++ A A
Sbjct: 48 GPYTICKLTKRSWEHQHAMHEITNRLRISQKRIGWAGTKDKNAVTTQYISLYNVPAEAAA 107
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGR--NGF 146
LN + + I + L LG LLGNRF ITLR + D+ K +A G G
Sbjct: 108 NLNIKDMTIE--PVATHQFSLGLGNLLGNRFKITLRDC--EPNDLAKNTAEISGEIAAGI 163
Query: 147 INYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILD---PREGERNEISKAREYYKETD 203
NY+GLQRFG+ TH +G +LR E+K AV + + P E E ++ AR+ + ET
Sbjct: 164 PNYYGLQRFGALKPVTHKMGYHILRKEFKEAVDLYVGGCFPYESE--QVQTARKNFAETG 221
Query: 204 DIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASA 263
D L +LP L ER +L L K PG+Y AL+A+P L M+V +YQS+L+N A S
Sbjct: 222 DAKTALYELPPWLSYERIMLDSLAKNPGDYGAALQAMPPKLLSMFVSAYQSWLFNIALSK 281
Query: 264 RVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGR 323
R ++++ L+E +H +
Sbjct: 282 R----------------------------------------CEENAPLNEPRVGEHLEFT 301
Query: 324 HNLVKTVTAADINSGKYTIDD----VVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTES 379
+ V TVT +I + + + +V +PG + + E EKD I++ +S
Sbjct: 302 NGRVDTVTEKNIATARQHMKRGRCFIVGWMPGKTLPVAPGPLEETMFAQMEKDNISM-QS 360
Query: 380 LHNVKEFSITSMTGNYRRV 398
+ EF T+ G +RR+
Sbjct: 361 FADATEFVKTNFDGAHRRI 379
>gi|219852685|ref|YP_002467117.1| tRNA pseudouridine synthase D TruD [Methanosphaerula palustris
E1-9c]
gi|219546944|gb|ACL17394.1| tRNA pseudouridine synthase D TruD [Methanosphaerula palustris
E1-9c]
Length = 422
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 86/249 (34%), Positives = 133/249 (53%), Gaps = 3/249 (1%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+ P G FL L K N + Q A+ I+ LGI + G+AGTKDK +V+TQ ++++
Sbjct: 42 DLPGGEGPFLLCTLTKRNWELQRAVKEIASSLGISHKRIGWAGTKDKHAVTTQTISLYGV 101
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
++A+++ L + L GL LG L+ NRFT+ +R + + D +
Sbjct: 102 TPEEIASVS--LGDLSLTVIGSANGGLSLGSLIENRFTVVIRDCIAEDLDQRVQEVTQVC 159
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEI-SKAREYYKE 201
G NY+G+QRFG TH+ G L++G++ AV + + + + + AR+ Y E
Sbjct: 160 SQGIPNYYGVQRFGVIRPITHIAGEYLIQGDYAGAVGAYVGKSSPDEDPVVAAARDEYLE 219
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAA 261
T D L LP HL ERA+L L P +YL AL+A+P L M V ++QS+L+N
Sbjct: 220 TRDPQLALHHLPVHLRYERAMLHHLTNHPDDYLGALQALPPKLLSMLVSAFQSYLFNMVL 279
Query: 262 SARVQKHGT 270
SAR++ T
Sbjct: 280 SARLEAELT 288
>gi|327401362|ref|YP_004342201.1| tRNA pseudouridine synthase D [Archaeoglobus veneficus SNP6]
gi|327316870|gb|AEA47486.1| tRNA pseudouridine synthase D [Archaeoglobus veneficus SNP6]
Length = 417
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 125/392 (31%), Positives = 189/392 (48%), Gaps = 57/392 (14%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G ++ + K N DT +++K LGI + +AGTKDKR++S Q ++ SKL
Sbjct: 44 GHYVIIRVKKVNWDTLNFARVLAKKLGISQKRVEYAGTKDKRAISVQYFSI-----SKLG 98
Query: 89 ALN-KRLIGIRLGD-----FCYVKEGLLLGQLLGNRFTITLRGVVVDSED--VIKASANS 140
+ +RL IR+ D G+ LG LLGN+F I V D+ D +++++
Sbjct: 99 EEDIERLKNIRIKDAEIEIVGRSNRGIDLGDLLGNKFRIR----VHDARDGRIVESTLKE 154
Query: 141 LGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAV-KMILDPREGERNEISKAREYY 199
L G N+FGLQRFG+ TH VG +L+ E+++A + P EGER +I K RE
Sbjct: 155 LDEKGTPNFFGLQRFGTIRFITHEVGKYILKREYENAFWTYVAKPFEGEREDIRKIREEL 214
Query: 200 KETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNH 259
T D LR+ P +L ER +LQ L++ +AL A+P+ L++M+VH+YQS+++N
Sbjct: 215 WNTRDAKLGLREFPSYLRYERILLQGLREGKDEE-RALLALPKNLKLMFVHAYQSYVFNR 273
Query: 260 AASARVQKHGTEHVVV-GDLV-FCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPET 317
+ R+++ G VV GD V F ++ EL EF + ++N
Sbjct: 274 LLTTRIEEFGNLKVVQEGDCVGFVSFAESFPEL---KDEFSFVNANR------------- 317
Query: 318 DHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMND-VAEVYHHLAEKDGINL 376
K V Y + LPLPG M V E + ++DGI L
Sbjct: 318 ----------KRVEFLISQKRAY----LALPLPGYET--KMKGWVKEKVEEILDEDGIRL 361
Query: 377 TESLHNVKEFSITSMTGNYRRVFQKPMDFEWE 408
+ H +EF S G+YR DF +E
Sbjct: 362 EDFRHEHREF---SSKGSYRVADMPFSDFTYE 390
>gi|198413526|ref|XP_002129794.1| PREDICTED: similar to pseudouridylate synthase 7 homolog (S.
cerevisiae)-like [Ciona intestinalis]
Length = 424
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 125/405 (30%), Positives = 179/405 (44%), Gaps = 97/405 (23%)
Query: 67 KDKRSVSTQRVTVFKQRASKLAALNKRLIG-IRLGDFCYVKEGLLLGQLLGNRFTITLRG 125
KDKR+++ QRV V KL ++ L +R+ L+ G L+GNRF I LR
Sbjct: 2 KDKRAITLQRVAVSGVSKDKLLEVSHVLPDHLRISHVIVTSLRLITGNLVGNRFDIKLRN 61
Query: 126 V-----VVDSE-----------DVIKASANSLGRNGFINYFGLQRFG-------SGSVP- 161
V SE I S + L GFINYFG QRFG GS+P
Sbjct: 62 VHGGKTTSSSETNEKPSKEDFISTISKSCDFLKTKGFINYFGPQRFGRRIDTKEPGSIPQ 121
Query: 162 --THLVGATLLRGEWKSAVKMILDPREGERNEI---SKAREYYKETDDIDGTLRKLPRHL 216
VG +L+ K AV+++L P I K + +++T +++ L+ +PRH
Sbjct: 122 WEAPSVGLAMLKQNMKRAVEILLLPAVEAGKPIDDEQKGKLLFQQTWNVEEALKLMPRHR 181
Query: 217 VAERAILQCLKKC--------------PGNY-LQ-----------ALKAIPRTLRMMYVH 250
E ILQ LK+ PG+ LQ AL IP R Y H
Sbjct: 182 FREIGILQSLKRNLAGKSLSNMGNSQQPGSVGLQQTSSSEQFCSKALLTIPFKERTFYAH 241
Query: 251 SYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSH 310
SY S+LWN AS R+++ G + V+ GDLV + D+E N E
Sbjct: 242 SYSSYLWNRVASERLRQLGCD-VIEGDLVIQRTGDSE------NIE-------------- 280
Query: 311 LDEVPETDHPDGRHNL-VKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLA 369
RH+ V V + D+ +++I DVVLPLPG+RV YP N + VY +
Sbjct: 281 ------------RHDSEVHVVVSDDVKCNRFSIYDVVLPLPGNRVQYPPN-LDAVYDRIF 327
Query: 370 EKDGINLTESLHNVKEFSIT----SMTGNYRRVFQKPMDF--EWE 408
++D + + F + ++ G YRR+ +KP +F WE
Sbjct: 328 KEDQLFIGTEPKASNYFRVNKLKLNLCGTYRRLIEKPKNFTINWE 372
>gi|341581787|ref|YP_004762279.1| tRNA pseudouridine synthase D [Thermococcus sp. 4557]
gi|340809445|gb|AEK72602.1| tRNA pseudouridine synthase D [Thermococcus sp. 4557]
Length = 416
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 90/251 (35%), Positives = 139/251 (55%), Gaps = 13/251 (5%)
Query: 34 FHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKR 93
F L K N DT A+ I+K GI R GFAGTKD+ +V+ Q ++V + K+ + R
Sbjct: 49 FLLKKRNWDTMSAVKEIAKRAGINYRDIGFAGTKDRHAVTYQYISVPQDAKEKVENVQIR 108
Query: 94 LIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGV----VVDSEDVIKASANSLGRNGFINY 149
+ +R F + LG LLGNRF I +R V S ++I+ + R GF NY
Sbjct: 109 DVELR---FVSYGRFIKLGHLLGNRFRIIVREVDEKAFERSREIIRELRS---RGGFPNY 162
Query: 150 FGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDDIDGTL 209
FG QRFG V HL+G LL+G+++ A ++ L EG E +AR+++ ET D+D L
Sbjct: 163 FGYQRFGERRVTNHLIGKLLLQGDFEGAARLFLGAHEGG-MEGDEARKHFWETGDVDRAL 221
Query: 210 RKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKH- 268
+ P L ER +L K+ G++ +A ++P + +++H+YQS+L+N S R++
Sbjct: 222 EEFPNFLRYERTLLYRYKET-GSWRRAFLSLPLPIMRIFIHAYQSYLFNLYISRRIEMGI 280
Query: 269 GTEHVVVGDLV 279
+VGD+V
Sbjct: 281 PLNEALVGDIV 291
>gi|294496232|ref|YP_003542725.1| tRNA pseudouridine synthase D TruD [Methanohalophilus mahii DSM
5219]
gi|292667231|gb|ADE37080.1| tRNA pseudouridine synthase D TruD [Methanohalophilus mahii DSM
5219]
Length = 438
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 88/267 (32%), Positives = 151/267 (56%), Gaps = 22/267 (8%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRAS--- 85
GK+L L K+N +T + +S+++GI + FGFAGTKDKR+++TQR++++ A
Sbjct: 47 GKYLILELTKKNWETHHLIRDMSRIMGISSKRFGFAGTKDKRALTTQRISIYDLEAEDIE 106
Query: 86 --KLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSED----VIKASAN 139
KL +N +++G D LG L+GN+F I +R + + E+ ++ ++
Sbjct: 107 RIKLKDVNLKVLGSSNKDVG-------LGDLVGNKFKIIVRDIDLPEEELDSRLLSITST 159
Query: 140 SLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEW-KSAVKMI--LDPREGERNEISKAR 196
+G N+FG+QRFGS THLVG +++RG+ K+A+ I P E E+ + + R
Sbjct: 160 IRKLDGVPNFFGIQRFGSRRPITHLVGESIVRGDIEKAAIDYIGLSFPDEHEKTRLVRDR 219
Query: 197 EYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFL 256
+YKE + I+ +L++ P L ERA++ L P ++ A + +R M+VH+YQS++
Sbjct: 220 -FYKERNYIE-SLKEYPVQLRYERAMMHYLVNNPDDFAGAFGELSSNMRNMFVHAYQSYI 277
Query: 257 WNHAASARV-QKHGTEHVVVGDLVFCK 282
+N R+ +K + GD+V K
Sbjct: 278 YNRIICRRIREKLPLNEAIEGDIVCFK 304
>gi|212223492|ref|YP_002306728.1| tRNA pseudouridine synthase D [Thermococcus onnurineus NA1]
gi|226708709|sp|B6YTE4.1|TRUD_THEON RecName: Full=Probable tRNA pseudouridine synthase D; AltName:
Full=tRNA pseudouridine(13) synthase; AltName: Full=tRNA
pseudouridylate synthase D; AltName: Full=tRNA-uridine
isomerase D
gi|212008449|gb|ACJ15831.1| tRNA pseudouridine synthase D [Thermococcus onnurineus NA1]
Length = 416
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 90/252 (35%), Positives = 140/252 (55%), Gaps = 7/252 (2%)
Query: 30 KFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAA 89
K+ F L K N DT A+ I+K GI + GFAGTKD+ +V+ Q ++V + K+ A
Sbjct: 45 KYAIFLLKKRNWDTMAAVKEIAKRAGISYKDIGFAGTKDRHAVTYQYISVPRDAKEKVEA 104
Query: 90 LNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSL-GRNGFIN 148
+ + I +R F L LG LLGNRF I +R V + + K L + GF N
Sbjct: 105 VRIKDIELR---FVSYGRALKLGHLLGNRFKIIVRDVDESAFERTKEIVRELRSKGGFPN 161
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDDIDGT 208
YFG QRFG V HL+G LL+G+++ A ++ L G E +AR+ + ET D++
Sbjct: 162 YFGYQRFGERRVTNHLIGKLLLKGDFEGAARLFLGAHGGG-MEGDEARKNFWETGDVNRA 220
Query: 209 LRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKH 268
L + P L ERA+L K+ G++ +A ++P + +++H+YQS+L+N S R+++
Sbjct: 221 LEEFPGFLRYERAMLYRYKET-GSWRKAFLSLPLPIMRIFIHAYQSYLFNLYISRRIEEG 279
Query: 269 -GTEHVVVGDLV 279
+VGD+V
Sbjct: 280 LPLNEALVGDIV 291
>gi|449479758|ref|XP_004155699.1| PREDICTED: multisubstrate pseudouridine synthase 7-like [Cucumis
sativus]
Length = 129
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 75/142 (52%), Positives = 94/142 (66%), Gaps = 13/142 (9%)
Query: 391 MTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDP 450
MTG+YRRVFQ+P D+EWEL++Y+D N PLA++DL + K++ V I KEE+ +K +D
Sbjct: 1 MTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQSVEISKEEKIADKSKNEDS 60
Query: 451 SDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCY 510
D QS K+I+L A KE + G +Q QMALKL TLP+S Y
Sbjct: 61 LDSTDQSVCCKKNIQLE------AGGKENEN-------GQGTQDPQMALKLSFTLPASSY 107
Query: 511 ATMAIRELLKTSTSVAFHKTLN 532
ATMAIRELLKTSTSVAFHKTLN
Sbjct: 108 ATMAIRELLKTSTSVAFHKTLN 129
>gi|57642237|ref|YP_184715.1| tRNA pseudouridine synthase D [Thermococcus kodakarensis KOD1]
gi|62901176|sp|Q5JDB6.1|TRUD_PYRKO RecName: Full=Probable tRNA pseudouridine synthase D; AltName:
Full=tRNA pseudouridine(13) synthase; AltName: Full=tRNA
pseudouridylate synthase D; AltName: Full=tRNA-uridine
isomerase D
gi|57160561|dbj|BAD86491.1| tRNA pseudouridine synthase D [Thermococcus kodakarensis KOD1]
Length = 416
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 89/252 (35%), Positives = 140/252 (55%), Gaps = 7/252 (2%)
Query: 30 KFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAA 89
K+ F L K N +T A+ I+K GI R GFAGTKD+ +V+ Q ++V + ++
Sbjct: 45 KYAIFLLKKRNWETMAAVKEIAKRAGINYREIGFAGTKDRHAVTYQYISVPAEARERVEQ 104
Query: 90 LNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG-RNGFIN 148
++ R I +R F + LG LLGNRF I +R V D+ D K L + GF N
Sbjct: 105 VSIRDIELR---FVSYGRFIKLGHLLGNRFRIIVRDVSEDAFDRTKEIVRELREKGGFPN 161
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDDIDGT 208
YFG QRFG V H++G LL+G+++ A ++ L +G E +AR+ + ET D++
Sbjct: 162 YFGYQRFGERRVVNHIIGKLLLQGDFEGAARLFLGAHDGS-MEGDEARKNFWETGDVERA 220
Query: 209 LRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKH 268
L + P L ER +L K GN+ +A ++P + +++H+YQS+L+N S R+++
Sbjct: 221 LEEFPGFLRYERTLLHRYKDT-GNWKRAFLSLPLPIMRIFIHAYQSYLFNLYLSRRIEEG 279
Query: 269 -GTEHVVVGDLV 279
+VGD+V
Sbjct: 280 LPLNEPLVGDIV 291
>gi|308160197|gb|EFO62696.1| Pseudouridylates U2 snRNA at position 35 [Giardia lamblia P15]
Length = 674
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 143/558 (25%), Positives = 236/558 (42%), Gaps = 111/558 (19%)
Query: 2 GRNSKKRKERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEAL-GLISKM---LGIL 57
G + + K + P R SE K+ F L K DT +A+ ++++M
Sbjct: 156 GEQTYRLKIQPQKPRIPRPSE-------KYTHFVLEKAGLDTMQAITSMVARMHPQFRCK 208
Query: 58 PRSFGFAGTKDKRSVSTQRVTVFKQRASKLAA--LNKRLIGIRLGDFCYVKEGLLLGQLL 115
F + GTKDKR V+ QRV S L+A L + +++GDF + E L LG L
Sbjct: 209 VNDFTYRGTKDKRGVTVQRVCAKGAWPSVLSATSLTSSGMYLQMGDFSFSSEPLRLGAHL 268
Query: 116 GNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWK 175
GN F + LRG+ + + + ++ +GFINYFG QRFGS S+ TH +G +L G++
Sbjct: 269 GNSFELILRGIPHTAAEYLSHRLFTIESHGFINYFGHQRFGSRSIGTHHIGVAILSGQYS 328
Query: 176 SAVKMI--------LDPREGERNEISKAREYY--KETDDIDGTLRKL----PRHLVAERA 221
A+ MI L P + K+ + +L KL + L A +
Sbjct: 329 DALWMIVRTSVECRLKPTVTTCDSFKDVMTSIANKDAKSFESSLSKLLDDAGKSLSAFSS 388
Query: 222 ILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAAS---ARVQ--------KHGT 270
+ +++ + LK IPR+++ MY+H++Q++L+N A S R++ K T
Sbjct: 389 TFRLVRESADPLVALLKHIPRSMQTMYIHAFQAYLFNLATSRCIVRIKDEIATGTRKVAT 448
Query: 271 EHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTV 330
+++ D V+ +G E N + +
Sbjct: 449 NCLLLNDPVYVRGTTIRIE-----------------------------------NKIHLI 473
Query: 331 TAADINSGKYTIDDVVLPLPGSRVIYPMND---------VAEVYHHLAEKDGINLTESLH 381
TA D+ G Y ++D+ +PL G++ I + D +A+VY KD + L
Sbjct: 474 TADDLVKGTYALNDLAIPLLGTKTIQLLEDAASKLPRSLLADVYE--TYKDTL-----LL 526
Query: 382 NVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEA 441
N F S T R V K + PL T + I +L+ +V ++
Sbjct: 527 NGLSFDFLS-TMTQRTVVPKEL-------------SPLLRTFI-PIGDVRLLLVVPKDLE 571
Query: 442 VCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKL 501
+C + +D + ++ DI + + V+ P S D++ +L L
Sbjct: 572 MCWIRHASLTDTLGVTD---MDILAGKRPHVFSKVSVVEPPSTIS----DTKANYRSLAL 624
Query: 502 GLTLPSSCYATMAIRELL 519
+L SS YAT +RELL
Sbjct: 625 RFSLSSSVYATEFLRELL 642
>gi|428170594|gb|EKX39518.1| hypothetical protein GUITHDRAFT_114484 [Guillardia theta CCMP2712]
Length = 601
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 110/387 (28%), Positives = 166/387 (42%), Gaps = 76/387 (19%)
Query: 16 FDSRGSENWPEQL-------------GKFLRFHLYKENKDTQEALGLISKMLGIL--PRS 60
D+ GS WP K ++F L K DT A+ +I++ L I +
Sbjct: 90 LDAWGSIVWPRDFESVNVSGQSQGGRRKIVQFSLVKTGWDTMSAVSMIARKLNIRLSKAT 149
Query: 61 FGFAGTKDKRSVSTQRVTVFKQRASK----LAALNKRLIGIRLGDFCYVKEGLLLGQLLG 116
G G KDK +++ Q+VT+ Q+AS L LNK+L GI++ D V L G+ G
Sbjct: 150 SGCCGLKDKGALTCQKVTINSQQASSDLTALMGLNKQLEGIKIADVELVDRMLRYGEHSG 209
Query: 117 NRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKS 176
NRFTI LR + V + V A L R GF+NYFG QRFG+G VP+ VG LL W+
Sbjct: 210 NRFTILLRNITVSNSRVFDA-VKRLRRFGFVNYFGHQRFGTGPVPSTEVGRLLLGKRWRE 268
Query: 177 AVKMILDPREGERNEI---SKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNY 233
A + ++ + R +KAR+ + E + L R + + L+
Sbjct: 269 AGEEVMSTKYIRRCHSAGEAKARQIFVEQGNASAALEA----FATSRNVNESLR------ 318
Query: 234 LQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCV 293
QA + R ++ +Y S +WN A+ R+ ++ VVGDLV K D
Sbjct: 319 -QAFSKLARA--DLWRQAYTSLVWNRMATKRLMEYDRRKAVVGDLVAVKRYD-------- 367
Query: 294 NPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPL--PG 351
V V D+ +G+Y+I VVLP+
Sbjct: 368 ------------------------------KTFVDVVKEEDVAAGRYSIAQVVLPVFARN 397
Query: 352 SRVIYPMNDVAEVYHHLAEKDGINLTE 378
++++P N V + DG++ E
Sbjct: 398 KKLLFPKNAVGSSARASLQADGLSFEE 424
>gi|298674263|ref|YP_003726013.1| tRNA pseudouridine synthase D [Methanohalobium evestigatum Z-7303]
gi|298287251|gb|ADI73217.1| tRNA pseudouridine synthase D TruD [Methanohalobium evestigatum
Z-7303]
Length = 438
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 104/359 (28%), Positives = 175/359 (48%), Gaps = 48/359 (13%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
GK+L L K N +T + +++ LGI + GFAGTKDKR+V+TQ+++++ L
Sbjct: 47 GKYLVLELKKSNWETHHLIRDLTRKLGISQKRIGFAGTKDKRAVTTQKISIYDL---SLE 103
Query: 89 ALNKRLIGIRLGDFCYV---KEGLLLGQLLGNRFTITLRGV------VVDSEDVIKASAN 139
+N + ++ + Y+ + + LG L+GN F IT+R + + ++I
Sbjct: 104 DINN--VTLKDSEMNYIGRSDKSIELGDLIGNEFYITVRNTDHSIDELYNQLEIITKDIK 161
Query: 140 SLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWK-SAVKMILDPREGERNEISKAREY 198
+ G N+FG+QRFGS TH+VG +L+RG+ + +A+K I E + AR+Y
Sbjct: 162 QM--EGIPNFFGVQRFGSTRPVTHIVGESLVRGDPEDAALKYIAFAFPEEPEDTKSARKY 219
Query: 199 YKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWN 258
ET D L+ P L ER+++ L K P +Y A +PR ++ ++VH+YQS+L+N
Sbjct: 220 VYETRDYIEGLKLYPLRLRYERSMMDYLIKNPDDYSGAFNVLPRNIQRIFVHAYQSYLFN 279
Query: 259 HAASARVQKH-GTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPET 317
R+++ V GD+V C + + D+S + EV T
Sbjct: 280 KILCQRIKEGLPLNRAVEGDIV-C-----------------FRNKAGLPDTSRIQEVTST 321
Query: 318 DHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINL 376
+ DG +NL+K A V PL G + + E+ + ++ G+ L
Sbjct: 322 N-IDGMNNLIKRKRAF-----------VTAPLIGYQTEFSSGKPGEIEKKIFDETGLTL 368
>gi|91773258|ref|YP_565950.1| tRNA pseudouridine synthase D [Methanococcoides burtonii DSM 6242]
gi|121691751|sp|Q12WH6.1|TRUD_METBU RecName: Full=Probable tRNA pseudouridine synthase D; AltName:
Full=tRNA pseudouridine(13) synthase; AltName: Full=tRNA
pseudouridylate synthase D; AltName: Full=tRNA-uridine
isomerase D
gi|91712273|gb|ABE52200.1| tRNA pseudouridine synthase [Methanococcoides burtonii DSM 6242]
Length = 439
Score = 135 bits (339), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 104/348 (29%), Positives = 175/348 (50%), Gaps = 43/348 (12%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
GK+L L K N +T + ++++L I + GFAGTKDKR+V+TQ+++++ L
Sbjct: 48 GKYLILELTKRNWETHHLIRDLTRILRISQKRVGFAGTKDKRAVTTQKISIYDMEEEALQ 107
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDV----IKASANSLGRN 144
N L L + L LG L GN F IT+R + +D +++ + +A+ +
Sbjct: 108 --NVHLKDTELKILGRSNKSLELGDLTGNEFIITVRDIDLDEKELESRLSQTTASIKEQG 165
Query: 145 GFINYFGLQRFGSGSVPTHLVGATLLRGEW-KSAVKMILDPREGERNEISKAREYYKETD 203
G N+FG+QRFG+ TH+VG +++R + K+A+ I E + + R ET
Sbjct: 166 GVPNFFGIQRFGALRPITHVVGESIVRNDIEKAAMAYIAASYPDEPEDTQEVRNRVFETK 225
Query: 204 DIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASA 263
D L+ P L ERA++ L P +Y + + +P +R M+VH+YQS+++N +
Sbjct: 226 DYIEGLKGYPLQLRYERAMMHHLVSKPEDYAGSFETLPANIRKMFVHAYQSYIYNTIICS 285
Query: 264 RVQKH-GTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDG 322
R++K VVGD+V C +++ D S + V E D+ DG
Sbjct: 286 RIKKGLPLNRAVVGDIV-C-----------------FKNKAGLPDKSRNERVTE-DNIDG 326
Query: 323 RHNLVKT----VTA------ADINSG------KYTIDDVVLPLPGSRV 354
+NLVK VTA +++ SG + I+++ +P+ G +V
Sbjct: 327 MNNLVKRNRAFVTAPLVGYSSELASGVPGEIEREVIEELNVPIEGFKV 374
>gi|47222070|emb|CAG12096.1| unnamed protein product [Tetraodon nigroviridis]
Length = 692
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 131/533 (24%), Positives = 214/533 (40%), Gaps = 145/533 (27%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKL--- 87
+ F L KEN +T EA+ ++ LG+LP F +AG KDKR+V+ Q + V K +L
Sbjct: 259 YTAFTLCKENLETLEAISYMAAELGVLPSDFTYAGIKDKRAVTYQSMVVKKVSPQRLEEK 318
Query: 88 -AALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGV------------------VV 128
A KR G+ + E L LG+L GN F + +R + V
Sbjct: 319 TAEFEKR--GMHVSQIHSASEPLRLGRLQGNHFDLVVRDLRPHRSADTHPPLAELIKEAV 376
Query: 129 DSEDVIKASA-----------------NSLGRNGFINYFGLQRFGSG-SVPTHLVGATLL 170
++ +V S + L GF+NY+G QRFGSG SV + VG LL
Sbjct: 377 ENVEVALYSTCRLKSPRLTTPASPRFVSPLQNRGFVNYYGPQRFGSGQSVLSDRVGLALL 436
Query: 171 RGEWKSAVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKC- 229
+ ++ AV++ P EG + S A+ ++ +TD+ +L +P ER +L+ L +
Sbjct: 437 KEDFVGAVRLFFTPEEGH-DPPSLAKRHFLQTDNAKESLAMMPFSKPRERLMLRALNRYG 495
Query: 230 --PGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTE 287
P QA ++P + R+ Y H+Y S +WN AA+ R+ G V GDLV+ + +
Sbjct: 496 TGPEGCAQAWLSLPHSTRVFYPHAYCSRVWNEAAAQRLITLG-HRVRCGDLVWRQEEPKI 554
Query: 288 KELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVL 347
E ++G+ + V+L
Sbjct: 555 LE----------------------------------------------DTGESSTPQVLL 568
Query: 348 PLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEW 407
P+PG+ V YP N + + +DG L S V + ++ G+YR + P + +
Sbjct: 569 PMPGNTVKYPQNAMGPWFQERLSRDG--LEGSRFRVGGLKL-NLPGSYRPLLASPRNLSY 625
Query: 408 ELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLS 467
+L +DC K++
Sbjct: 626 QLQR---------------------------------------ADCGGGRGGGGKEV--- 643
Query: 468 TENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLK 520
+ K+ ++ A+ + +L L L SSCYAT+ +RE++K
Sbjct: 644 -------TGESSKRDRQKNESSAEDKQDSPSLMLNFDLDSSCYATICLREIMK 689
>gi|71408477|ref|XP_806640.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70870444|gb|EAN84789.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 411
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 85/220 (38%), Positives = 120/220 (54%), Gaps = 8/220 (3%)
Query: 25 PEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRA 84
P L KFL F LYKEN D+ AL I+ L + R F+GTKDKR+V+ QRV V
Sbjct: 191 PLHLQKFLHFTLYKENMDSNRALRAIAGHLCLPVRQLLFSGTKDKRAVTLQRVAVRGLSC 250
Query: 85 SKLAALNKRLIG----IRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSE---DVIKAS 137
+L+ +N R G +++ F + GL LG +GN F I LR + +E D++K
Sbjct: 251 ERLSEINDRSFGPDCKLKVCGFQEAETGLRLGDTMGNHFLIALRLLPDSTEPSPDMLKVI 310
Query: 138 ANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKARE 197
+G G +NY+G QRFG+ V T VG LL GE++ A++MI + + ++E
Sbjct: 311 QEVIGSVGVVNYYGPQRFGTTEVLTSDVGIKLLSGEFEQALRMIFHSKAIVEPNLLPSKE 370
Query: 198 YYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQAL 237
E D L+ LPR+ ER IL+ L KCP ++L AL
Sbjct: 371 AV-ERRSFDEALKLLPRYCFQERDILKHLVKCPNDFLGAL 409
>gi|268324791|emb|CBH38379.1| probable tRNA pseudouridine synthase D [uncultured archaeon]
Length = 435
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 100/287 (34%), Positives = 153/287 (53%), Gaps = 15/287 (5%)
Query: 16 FDSRGSENWPE-QLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVST 74
F+ R N E + GK+L L KEN DT + I+ L + GFAGTKDK +V+
Sbjct: 36 FNVREITNRTEREEGKYLIAELTKENWDTHGVIREIAHRLRVSRNRIGFAGTKDKFAVTK 95
Query: 75 QRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSE--- 131
Q+++++ ++LA +N + + L + + LG L GN F I +RGV E
Sbjct: 96 QKISIWSTEENELARVN--IADVSLDVIGRSNKAVSLGDLYGNEFEIVIRGVEGRYEAVK 153
Query: 132 DVIKASANSLGRNGFI-NYFGLQRFGSGSVPTHLVGATLLRGEWKSAV-KMILDPREGER 189
D I A N +G NG I N+FG+QRFG TH+VG L+ G+ K AV I D GE
Sbjct: 154 DKIDAITNEIGNNGGISNFFGVQRFGITRPITHVVGRHLINGDIKGAVMSYISDIFPGES 213
Query: 190 NEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYV 249
+AR K + + +L+ +P L ERA+L L K G+ L A ++P+ L+ ++V
Sbjct: 214 EAAKQARILCK-SGKLKESLKIMP--LRYERAMLNALIKNDGDSLSAFHSLPKNLQKLFV 270
Query: 250 HSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPE 296
H+YQS+L+N S R++++ +V + V C E+G +P+
Sbjct: 271 HAYQSYLFNLILSQRMKQNLPFNVAIAGDVVC----FHNEVGFPDPD 313
>gi|409095224|ref|ZP_11215248.1| tRNA pseudouridine synthase D [Thermococcus zilligii AN1]
Length = 416
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 90/253 (35%), Positives = 139/253 (54%), Gaps = 7/253 (2%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
GK F L K N +T A+ I+K I GFAGTKD+ +V+ Q ++V + K+
Sbjct: 44 GKHAVFLLKKRNWETMAAVKEIAKRAEIRHSDIGFAGTKDRHAVTYQYISVPARAREKVE 103
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG-RNGFI 147
+ R I +R F + + LG L+GNRF I +R V ++ + + L + GF
Sbjct: 104 GVQIRDIELR---FVSYGKFIKLGYLVGNRFRIIVRDVNGEAFERTREIVGELREKGGFP 160
Query: 148 NYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDDIDG 207
NYFG QRFG V HL+G LL+G+++ A ++ L EGE E +AR + ET D+D
Sbjct: 161 NYFGYQRFGERRVTNHLIGKLLLQGDFEGAARLFLGAHEGE-MEGDEARRRFWETGDVDR 219
Query: 208 TLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQK 267
L + P L ERA+L K+ G++ +A +P + +++HSYQS+L+N S R+++
Sbjct: 220 ALEEFPNFLRYERAMLHRYKET-GSWKRAFLGLPLPIMRIFIHSYQSYLFNLYISRRIEE 278
Query: 268 H-GTEHVVVGDLV 279
+VGD+V
Sbjct: 279 GLPLNEALVGDIV 291
>gi|397780358|ref|YP_006544831.1| tRNA pseudouridine synthase D [Methanoculleus bourgensis MS2]
gi|396938860|emb|CCJ36115.1| tRNA pseudouridine synthase D [Methanoculleus bourgensis MS2]
Length = 424
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 104/355 (29%), Positives = 161/355 (45%), Gaps = 53/355 (14%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G +L L K N + Q A+ I+K LGI R +AGTKDK +V+TQ ++++ +
Sbjct: 50 GSYLICRLSKTNWELQRAVKEIAKRLGISHRRIAWAGTKDKNAVTTQFISIYDLAPEAVG 109
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
++ + I + + + L LG L+GNRF IT+R + + + + G N
Sbjct: 110 RVHLKDISLEV--VGRSQHPLTLGGLVGNRFDITIRDCIPEDLAARVQAVTEVAAAGIPN 167
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSA-VKMILDPREGERNEISKAREYYKETDDIDG 207
Y+GLQRFG TH+VG +L G++++A V I E E AR ++ ET D
Sbjct: 168 YYGLQRFGVVRPVTHVVGEKILNGDYEAAAVTYIGRAYPLETEEAQGARTHFAETRDARA 227
Query: 208 TLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQK 267
L +LP + ERA+ L PG+Y AL+A+P L + V ++QS+L+N A S R+
Sbjct: 228 ALAELPVQMTYERAMANHLVANPGDYAGALRALPPKLLSLLVSAFQSYLFNCALSCRI-- 285
Query: 268 HGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDH---PDGRH 324
D+ L E DH DGR
Sbjct: 286 --------------------------------------DEGMSLTEPEVGDHLLFQDGRE 307
Query: 325 NLVKT----VTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGIN 375
++V T I G+ I + +PGS + P + E+ L +K+GI+
Sbjct: 308 DIVTTRNMRAAQLQIRRGRCRI---AIFIPGSGPVVPHGRMDEIMQELMQKEGID 359
>gi|432331647|ref|YP_007249790.1| tRNA pseudouridine synthase, TruD family [Methanoregula formicicum
SMSP]
gi|432138356|gb|AGB03283.1| tRNA pseudouridine synthase, TruD family [Methanoregula formicicum
SMSP]
Length = 424
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 93/261 (35%), Positives = 137/261 (52%), Gaps = 11/261 (4%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G +L L K N + Q A+ I+K LGI R G+AGTKD+ +++TQ ++++ ++
Sbjct: 50 GPYLICRLTKTNWELQHAVREIAKRLGISHRRIGWAGTKDRNAITTQWISIYDVTEEQVR 109
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDV---IKASANSLGRNG 145
+ +L I L E L LGQL GNRF + +R D D+ ++A ++ R
Sbjct: 110 GV--QLKDIVLEPLRNANEALALGQLEGNRFALVIRDT--DPNDLAGRVEAITGTV-REA 164
Query: 146 FINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILD-PREGERNEISKAREYYKETDD 204
N+FGLQRFG+ TH VG +LR ++ AV + P E ++ R + ET D
Sbjct: 165 VPNFFGLQRFGAIRPVTHAVGEWILRDNYEQAVLTYIGLPFPSENEDVRAVRTAFLETRD 224
Query: 205 IDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASAR 264
LR LP + ERA+LQ L PG+Y AL+ +P L M+V ++QS+++N A S R
Sbjct: 225 PAPALRNLPVQMNYERAMLQHLHNNPGDYAGALRELPPKLLSMFVSAFQSYIFNCALSRR 284
Query: 265 VQKHG--TEHVVVGDLVFCKG 283
TE V LVF G
Sbjct: 285 FDDGVALTEPVPGDHLVFANG 305
>gi|374628579|ref|ZP_09700964.1| tRNA pseudouridine synthase D [Methanoplanus limicola DSM 2279]
gi|373906692|gb|EHQ34796.1| tRNA pseudouridine synthase D [Methanoplanus limicola DSM 2279]
Length = 426
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 93/264 (35%), Positives = 146/264 (55%), Gaps = 10/264 (3%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G +L L K N + Q A+ ISK LGI R G+AGTKDK +V+TQ ++++ +++
Sbjct: 49 GPYLICELEKRNWELQRAVKEISKRLGISHRRIGWAGTKDKNAVTTQLISLYNIDEERIS 108
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANS--LGRNGF 146
AL+ + + L L LG+L GN F IT+ +E++ A+ G G
Sbjct: 109 ALSIK--DMVLKPVGRANAQLSLGELKGNGFGITISDCECSTEEMNGAAEECRIAGEKGI 166
Query: 147 I-NYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPR-EGERNEISKARE-YYKETD 203
I NY+G+QRFG+ +HL G +L+G+++SAV + E+ E +AR+ YYK D
Sbjct: 167 IPNYYGIQRFGAARPISHLAGLEILKGDYESAVACYVGMSFPDEKPETREARDIYYKNRD 226
Query: 204 DIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASA 263
++G L +P L ERA+L L + P +Y ALK +P L M V + QS+++N A S
Sbjct: 227 PVEG-LNVIPVFLRYERAMLHHLTEKPDDYQGALKVLPPKLLSMLVSACQSYIFNRALSH 285
Query: 264 RVQK-HGTEHVVVGD-LVFCKGDD 285
R++ G ++ GD ++F G +
Sbjct: 286 RIESGTGLNEIIPGDRIIFSDGKE 309
>gi|435851575|ref|YP_007313161.1| tRNA pseudouridine synthase, TruD family [Methanomethylovorans
hollandica DSM 15978]
gi|433662205|gb|AGB49631.1| tRNA pseudouridine synthase, TruD family [Methanomethylovorans
hollandica DSM 15978]
Length = 438
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 87/269 (32%), Positives = 140/269 (52%), Gaps = 12/269 (4%)
Query: 26 EQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRAS 85
E GK L L K + DT + +S+ LGI + GFAGTKDKR+V+TQR+++F
Sbjct: 44 EASGKHLILELTKRDWDTNHIIRDLSRSLGISQKRIGFAGTKDKRAVTTQRISIFDVTEE 103
Query: 86 KLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSE------DVIKASAN 139
+ ++ + ++L + + LG L GN F IT+R + + ++ D I +
Sbjct: 104 TIEKVHIK--DVQLTPLGRYRRSVELGDLRGNIFQITIRDIDLATDELKQRMDGITSEIQ 161
Query: 140 SLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM-ILDPREGERNEISKAREY 198
++G G N+FG+QRFG+ THLVG L+RG + A + I + E E AR+
Sbjct: 162 NMG--GVPNFFGIQRFGAIRPVTHLVGEALVRGSPEEAAMIYIAASFKDEPQETRIARDE 219
Query: 199 YKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWN 258
+ T D LR P L ERA++ L + P +Y + + ++ M+VH++QS+++N
Sbjct: 220 VRNTRDFAQGLRTFPPRLRYERAMMHYLVEHPEDYKGSFSMLTDSMSRMFVHAFQSYIYN 279
Query: 259 HAASARVQKH-GTEHVVVGDLVFCKGDDT 286
AR+Q + GD+V K D+
Sbjct: 280 RVICARIQAGIPLNQAIEGDIVCFKNSDS 308
>gi|304313887|ref|YP_003849034.1| tRNA pseudouridine synthase D [Methanothermobacter marburgensis
str. Marburg]
gi|302587346|gb|ADL57721.1| predicted tRNA pseudouridine synthase D [Methanothermobacter
marburgensis str. Marburg]
Length = 415
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 86/252 (34%), Positives = 133/252 (52%), Gaps = 11/252 (4%)
Query: 38 KENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGI 97
KE++ T + L I++ L + R GFAG KD+ +V+ Q + V + + R+ +
Sbjct: 48 KEDRTTLDVLLDIARELHLDRRRMGFAGMKDRNAVTRQWICVSNTDPEDVKGIEDRIRNV 107
Query: 98 RLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSE-DVIKASANSLGRNGFINYFGLQRFG 156
R ++ L +GQL GNRF I +RG D + + + L G NY+G QRFG
Sbjct: 108 RFLKVTSNEKKLRMGQLRGNRFRILIRGPEADDPLEKTRETLAELQEKGVPNYYGWQRFG 167
Query: 157 SGSVPTHLVGATLLRGEWKSAV-KMILDPREGERNEISKAREYYKETDDIDGTLRKLPRH 215
S THLVG L+ G+ K AV I +P EGE +S+AR Y + D++G +P
Sbjct: 168 SPRAITHLVGRALVHGDVKGAVDTYIGNPIEGESELVSRARRAY-DMGDLEGAYELMPAS 226
Query: 216 LVAERAILQCLKKCPG-------NYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKH 268
L ER +L+ L + G +Y+ A+ A+P+ L+ M+VH+YQS+L+N S R
Sbjct: 227 LRYERMMLRVLIRDLGKGELSEKSYITAVHALPKPLKRMFVHAYQSYLFNRVVSERAAL- 285
Query: 269 GTEHVVVGDLVF 280
G + GD++
Sbjct: 286 GINSYLEGDIII 297
>gi|383319918|ref|YP_005380759.1| tRNA pseudouridine synthase D [Methanocella conradii HZ254]
gi|379321288|gb|AFD00241.1| putative tRNA pseudouridine synthase D [Methanocella conradii
HZ254]
Length = 446
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 88/244 (36%), Positives = 136/244 (55%), Gaps = 7/244 (2%)
Query: 27 QLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASK 86
Q G++L L KEN +T + +S+ LGI G AGTKDKR+V++Q +++ +
Sbjct: 60 QSGEYLIVRLTKENWETHHLIRDLSRQLGISEERIGIAGTKDKRAVTSQLISIRGISEEQ 119
Query: 87 LAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDV---IKASANSLGR 143
LA ++ L +RL + LG L GN F I ++ +V+D E + +KA S+ R
Sbjct: 120 LARVD--LPRVRLEPIGRANRDIGLGDLRGNEFDINIKNIVLDKEGLSMRVKAIDESIAR 177
Query: 144 NGFI-NYFGLQRFGSGSVPTHLVGATLLRGEWK-SAVKMILDPREGERNEISKAREYYKE 201
G + N+FG QRFG THLVG L++G+ + +A+ I GE E KAR+ +
Sbjct: 178 AGGVPNFFGYQRFGIVRPVTHLVGKKLVQGDVEGAAMAYIAASFPGEMEENRKARDLVFK 237
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAA 261
T D L+ P +L ERA++ L + PG+Y A +A+ L ++VH+YQS+L+N
Sbjct: 238 TKDFKEGLKLYPLNLRYERAMMHYLVEHPGDYAGAFRALSPRLLKLFVHAYQSYLFNRLL 297
Query: 262 SARV 265
S R+
Sbjct: 298 SRRM 301
>gi|20092087|ref|NP_618162.1| tRNA pseudouridine synthase D [Methanosarcina acetivorans C2A]
gi|37089061|sp|Q8TKX2.1|TRUD_METAC RecName: Full=Probable tRNA pseudouridine synthase D; AltName:
Full=tRNA pseudouridine(13) synthase; AltName: Full=tRNA
pseudouridylate synthase D; AltName: Full=tRNA-uridine
isomerase D
gi|19917304|gb|AAM06642.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
Length = 441
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 137/257 (53%), Gaps = 8/257 (3%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G++L L K + DT ++K+L I + AGTKDKR+++TQ++++F A ++
Sbjct: 50 GRYLVLELTKRDWDTHHFTRTLAKILQISQKRISVAGTKDKRALTTQKISIFDIDALEIE 109
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSED----VIKASANSLGRN 144
++ L + L ++ + LG L GN F IT+R + E+ + K ++ L +
Sbjct: 110 KIH--LKDVELKVLGRSRKSVELGDLWGNEFIITIRDISSSPEETRTILEKTNSKVLTQG 167
Query: 145 GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKA-REYYKETD 203
G N+FG+QRFGS THLVG ++ G ++ A + + E E +KA R++ KET
Sbjct: 168 GVPNFFGVQRFGSVRSVTHLVGKAIVEGNFEKAAMLYIAEPFPEEPEETKAARQFVKETR 227
Query: 204 DIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASA 263
D L+ P L ERA++ L P +Y A +P+ L M+VH+YQS+++N
Sbjct: 228 DFKEGLKTYPLRLGHERAMMNHLISNPEDYSGAFSVLPKNLYRMFVHAYQSYIYNMILCR 287
Query: 264 RVQKH-GTEHVVVGDLV 279
R++ V GD+V
Sbjct: 288 RIESGISLNRAVEGDIV 304
>gi|405960540|gb|EKC26457.1| Pseudouridylate synthase 7-like protein [Crassostrea gigas]
Length = 429
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 99/185 (53%), Gaps = 42/185 (22%)
Query: 24 WPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQR 83
WP G + RF LYKEN DT EA+ ++K I F FAGTKDKR++++Q VTV++ +
Sbjct: 244 WPAGFGNYCRFVLYKENMDTMEAVHKLTKFFHINKNMFQFAGTKDKRAITSQEVTVYRVK 303
Query: 84 ASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLR-------GV---------- 126
A KL N+ + LG+F YV++ L LGQL GNRFTI LR G
Sbjct: 304 AEKLVGANRYFYKMALGNFRYVEQPLKLGQLSGNRFTIVLRVKAEKLVGANRYFYKMALG 363
Query: 127 -------------------------VVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVP 161
V +++VI ++ SL NGFINYFG+QRFG+ ++P
Sbjct: 364 NFRYVEQPLKLGQLSGNRFTIVLRDVTGTDEVIDSALQSLKTNGFINYFGMQRFGTTAIP 423
Query: 162 THLVG 166
T+ VG
Sbjct: 424 TYRVG 428
>gi|284161584|ref|YP_003400207.1| tRNA pseudouridine synthase D TruD [Archaeoglobus profundus DSM
5631]
gi|284011581|gb|ADB57534.1| tRNA pseudouridine synthase D TruD [Archaeoglobus profundus DSM
5631]
Length = 427
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 113/373 (30%), Positives = 178/373 (47%), Gaps = 57/373 (15%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G ++ + K N DT + ++S L I + +AGTKDKR+VS Q V + +L
Sbjct: 48 GDWVIIKVKKVNWDTLNFVRVLSNKLRISQKRISYAGTKDKRAVSVQYFAVRIKSEDEL- 106
Query: 89 ALNKRLIGIRLGD-----FCYVKEGLLLGQLLGNRFTITLRGVVVDSEDV--IKASANSL 141
+RL G+ + D + LG L GN F + V+ ++++V I L
Sbjct: 107 ---ERLKGLSIKDAEIEVVGRTNRSIQLGDLKGNIFKV----VIKNAKNVSNIPLIEGEL 159
Query: 142 GRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM-ILDPREGERNEISKAREYYK 200
G N+FGLQRFGS TH VG +L+ ++++A + + P EGE + K RE
Sbjct: 160 RARGTPNFFGLQRFGSIRFITHEVGKYILKRDYETAFWVYVAKPFEGESEDARKVREILW 219
Query: 201 ETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
T D+ LR++P++L ER +LQ L++ +AL ++P L+MM++H+YQS+++N+
Sbjct: 220 NTRDVKFGLREMPKYLRYERTLLQKLREGKSEK-EALLSLPENLKMMFIHAYQSYVFNNV 278
Query: 261 ASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHP 320
S R+ + G VV KGD +D V D+
Sbjct: 279 LSDRIAEFGNLKVV------EKGD-------------------------WVDFVNLNDYY 307
Query: 321 DGRHNLVKTVTAADINSGKYTIDD----VVLPLPGSRVIYPMND--VAEVYHHLAEKDGI 374
R + VK V + K+ I+ + +PLPG P+ D +E E+DGI
Sbjct: 308 TFREDFVK-VHDHNYKRVKFLIERGLCALAIPLPGYET--PLGDDWTSERIRFYLERDGI 364
Query: 375 NLTESLHNVKEFS 387
+L + H KEFS
Sbjct: 365 DLKDFKHEYKEFS 377
>gi|337283886|ref|YP_004623360.1| tRNA pseudouridine synthase D [Pyrococcus yayanosii CH1]
gi|334899820|gb|AEH24088.1| tRNA pseudouridine synthase D [Pyrococcus yayanosii CH1]
Length = 413
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 90/256 (35%), Positives = 144/256 (56%), Gaps = 14/256 (5%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G L F L K N +T A+ I+K LGI GFAGTKD+ +V+ Q +++ +
Sbjct: 43 GPCLLFLLKKRNWETMAAIKEIAKRLGIHYSEIGFAGTKDRHAVTYQYISICR------P 96
Query: 89 ALNKRLIGIRLG--DFCYVKEG--LLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRN 144
L +R+ I++ + +V +G L LG LLGNRF I +RG E++ + +
Sbjct: 97 ELKERVNSIKMKGVELRFVGKGRRLKLGMLLGNRFLIRVRGPE-RPENLPEIIGELKEKG 155
Query: 145 GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDD 204
GF NYFG QRFG V HLVG LL G+++SA ++ L EG+ E +AR + ET D
Sbjct: 156 GFPNYFGPQRFGERRVVNHLVGKLLLLGDFESAARLFLGYAEGD-MEGDEARRNFWETGD 214
Query: 205 IDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASAR 264
++ L + P+ L ERA+L ++ G++ +A +PR + +++H+YQ++L+N S R
Sbjct: 215 VERALEEFPKFLRYERAMLYRYRET-GSWKKAFLVLPRPIARIFIHAYQAYLFNLYLSRR 273
Query: 265 VQK-HGTEHVVVGDLV 279
+++ + GD+V
Sbjct: 274 IEEGMSLAEAIPGDIV 289
>gi|289193033|ref|YP_003458974.1| tRNA pseudouridine synthase D TruD [Methanocaldococcus sp.
FS406-22]
gi|288939483|gb|ADC70238.1| tRNA pseudouridine synthase D TruD [Methanocaldococcus sp.
FS406-22]
Length = 433
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 84/253 (33%), Positives = 138/253 (54%), Gaps = 13/253 (5%)
Query: 22 ENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFK 81
ENW G ++ F L K N T +A+ I+ +G + FGFAG KDK +V+TQRV F
Sbjct: 87 ENWK---GNYIHFTLEKRNWTTLDAIREIANRVGKQRKHFGFAGNKDKYAVTTQRVGCFN 143
Query: 82 QRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSL 141
R L + ++ GI L DF + + LG L GNRFTI +R + E++ KA
Sbjct: 144 VRLEDLKKV--KIKGITLRDFQKTNKKIRLGDLWGNRFTIRVREPELKGEELKKALDELC 201
Query: 142 GRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILD---PREGERNEISKAREY 198
F+NY+G+QRFG+ TH+VG ++ +W++A P + +++++ ARE
Sbjct: 202 KLKYFLNYYGVQRFGTTRPITHIVGRFIIERDWEAAFHAYCGTPLPYDDKKSKL--AREL 259
Query: 199 YKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWN 258
E ++ +K P+ ER +++ + G+Y +A +P LR M++++YQS+L+N
Sbjct: 260 VDE-ENFKEAYKKFPKVFFYERRMIKAYIET-GSYQKAFMILPPYLRCMFINAYQSYLFN 317
Query: 259 HAASARVQKHGTE 271
+ R + +G E
Sbjct: 318 EIINRRFE-YGFE 329
>gi|148672319|gb|EDL04266.1| pseudouridylate synthase 7 homolog (S. cerevisiae)-like [Mus
musculus]
Length = 629
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 86/236 (36%), Positives = 133/236 (56%), Gaps = 24/236 (10%)
Query: 18 SRGSENWPE--QLGK--FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVS 73
+RG + PE + GK + F L KEN +T EA+GL++ LG++P F +AG KDKR+++
Sbjct: 285 ARGKRSHPEGCERGKAVYTAFTLQKENLETFEAIGLLAVKLGVIPSDFSYAGLKDKRAIT 344
Query: 74 TQRVTVFKQRASKLAALNKRLIGIRLGDFCY--VKEGLLLGQLLGNRFTIT---LRGVVV 128
Q + V K +L ++ + + R+ F V + L LGQL GN F I LR +
Sbjct: 345 YQSMVVKKVTPERLKSIKEEIEKKRMNVFNIRSVGDCLRLGQLKGNHFEIIIRHLRNQLN 404
Query: 129 DS----EDVIKASANSLGRNGFINYFGLQRFGSGS-VPTHLVGATLLRGEWKSAVKMILD 183
DS E +++A N + GF+NY+G QRFG G + T +G LL+ E A+K+ L
Sbjct: 405 DSANLTERILEAIEN-VKNKGFVNYYGPQRFGKGQKIQTDQIGLALLKNEMVKAIKLFLT 463
Query: 184 PREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKK--------CPG 231
P + + + ++KA++Y+ T+D GTL +P V ERA+L+ L + CPG
Sbjct: 464 PEDVD-DPVNKAKQYFLRTEDAKGTLSLMPEFRVRERALLESLHRFGVTEEALCPG 518
>gi|148263044|ref|YP_001229750.1| tRNA pseudouridine synthase D [Geobacter uraniireducens Rf4]
gi|146396544|gb|ABQ25177.1| tRNA pseudouridine synthase D, TruD [Geobacter uraniireducens Rf4]
Length = 399
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 131/244 (53%), Gaps = 7/244 (2%)
Query: 38 KENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGI 97
K T EAL ++K LGI R G+AG KD R V+ Q ++ + ++ L + GI
Sbjct: 47 KRGITTLEALRRLAKALGIAERDMGYAGMKDARGVTRQTFSIPRVAPDRVLGLEVQ--GI 104
Query: 98 RLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFGS 157
R+ + L LG L GNRF + +RGV D+ A + L + G NYFG QR+G+
Sbjct: 105 RVLSASLHRNKLKLGHLRGNRFRLRVRGVTADAVPSASAVLSVLAKRGVPNYFGEQRYGT 164
Query: 158 GSVPTHLVGATLLRGEWKSAV-KMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHL 216
+HL+GA LLRG+++ AV +I D + A E Y+ D D +LR P H
Sbjct: 165 QG-NSHLIGAALLRGDYRGAVDALIGDAAKVTDERWRAAIEAYRRGDP-DESLRAFPGHC 222
Query: 217 VAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVG 276
ER +LQ L K P ++ +A +A+ L+ +Y+ ++QSFL++ R+ + + VV G
Sbjct: 223 RTERDLLQRLVKQPDDWEKAFRAVHPRLKKLYLSAFQSFLFDRLLDGRLDR--LDEVVDG 280
Query: 277 DLVF 280
D+ +
Sbjct: 281 DVAY 284
>gi|255513565|gb|EET89831.1| tRNA pseudouridine synthase D TruD [Candidatus Micrarchaeum
acidiphilum ARMAN-2]
Length = 409
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 90/246 (36%), Positives = 132/246 (53%), Gaps = 7/246 (2%)
Query: 26 EQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRAS 85
++ GKF+ F L K + +T +AL ++K LG +S FAGTKD+ SVSTQ ++F +
Sbjct: 49 QESGKFVAFVLQKRDWNTAQALISLAKTLGRGRKSVSFAGTKDRVSVSTQLCSIFGAARA 108
Query: 86 KLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSE--DVIKASANSLGR 143
++A+ RL I++ Y + +G LLGN F+I + + D D IK LG
Sbjct: 109 RVAS--ARLKDIKVNAAWYSDSQVRMGDLLGNNFSIKVYTDIDDDRLGDHIKKVCEELG- 165
Query: 144 NGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEIS-KAREYYKET 202
F NYFG QRFG VG LLRG+++ A L E N+ + ARE E
Sbjct: 166 GVFPNYFGEQRFGQRK-NNFEVGLCLLRGDFERAAMAFLTDTSNEINQDAVAAREKLAEH 224
Query: 203 DDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAAS 262
D + PR+L ER ++ L K PGNY AL+ +PR L +M+ HS +S ++N
Sbjct: 225 MDFAEAMNYFPRYLKYERMVIDYLAKFPGNYANALRKLPRQLLLMFAHSVESQIFNEEVE 284
Query: 263 ARVQKH 268
R+++H
Sbjct: 285 HRIKEH 290
>gi|261403427|ref|YP_003247651.1| tRNA pseudouridine synthase D TruD [Methanocaldococcus vulcanius
M7]
gi|261370420|gb|ACX73169.1| tRNA pseudouridine synthase D TruD [Methanocaldococcus vulcanius
M7]
Length = 430
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/247 (32%), Positives = 136/247 (55%), Gaps = 14/247 (5%)
Query: 22 ENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFK 81
E+W G F+ F L K+N T +A+ I+ +G + FGFAG KDK +++TQRV F
Sbjct: 87 EDWK---GTFIHFTLEKKNWTTLDAIREIANRVGKQRKHFGFAGNKDKYAITTQRVGCFN 143
Query: 82 QRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSL 141
+ L + + I +R DF + LG L GNRFT+ + ++ ED +K N L
Sbjct: 144 VKLEDLKKIKIKGIILR--DFQKTNRKIRLGDLWGNRFTVRVGDPILKGED-LKKVVNDL 200
Query: 142 GR-NGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILD---PREGERNEISKARE 197
R FINY+G+QRFG+ TH+VG ++ +W+SA + P + ER++++++
Sbjct: 201 CRLKYFINYYGIQRFGTTRPITHIVGKFIVERDWESAFHLYCGTPLPYDDERSKLARS-- 258
Query: 198 YYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLW 257
+ ++ ++ P+ ER +++ + GNY +A +P LR M+V++YQS+L+
Sbjct: 259 -LVDEENFKEAYKRFPKVFFYERRMIKRYLET-GNYQKAFMILPPHLRCMFVNAYQSYLF 316
Query: 258 NHAASAR 264
N + R
Sbjct: 317 NEIVNMR 323
>gi|315230512|ref|YP_004070948.1| tRNA pseudouridine 13 synthase [Thermococcus barophilus MP]
gi|315183540|gb|ADT83725.1| tRNA pseudouridine 13 synthase [Thermococcus barophilus MP]
Length = 422
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 88/279 (31%), Positives = 148/279 (53%), Gaps = 20/279 (7%)
Query: 13 DNPFDSRGSENWPEQL---GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDK 69
P D E P++L G L + L K+N +T A+ I+K +GI + GFAGTKD+
Sbjct: 25 QRPEDFIVVEIVPKRLISEGHCLIYKLKKKNWETMAAVKEIAKRIGIHYKEIGFAGTKDR 84
Query: 70 RSVSTQRVTV----FKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRG 125
+++ Q +++ K++ L + +L +F + L LG L+GN+F I +R
Sbjct: 85 HALTVQYISICDTSLKEKLDSLKIQDIKL------EFVGYGKALKLGMLIGNKFEIVIRE 138
Query: 126 VVVDSEDVIKASANSLG----RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMI 181
+ E+ + + + + GF NYFG QRFG V H +G LL+G+++ A
Sbjct: 139 PNLPIEEAFERTKEIIAELKSKGGFPNYFGYQRFGEKRVVNHEIGKLLLKGQFEDAAIKF 198
Query: 182 LDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIP 241
L GE E +AR+ + ET +I+ L + P+ L ERA+L K+ ++ +A +P
Sbjct: 199 LGEYTGE-MEGDEARKNFLETKNIEKALEEFPKFLRYERAMLYRYKETK-SWKKAFAVLP 256
Query: 242 RTLRMMYVHSYQSFLWNHAASARVQKH-GTEHVVVGDLV 279
R + +++HSYQS+L+N S R+++ +VGD+V
Sbjct: 257 RPILRIFIHSYQSYLFNKVLSRRIEEGLPLNEALVGDIV 295
>gi|297597696|ref|NP_001044397.2| Os01g0773000 [Oryza sativa Japonica Group]
gi|255673730|dbj|BAF06311.2| Os01g0773000 [Oryza sativa Japonica Group]
Length = 258
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/159 (47%), Positives = 88/159 (55%), Gaps = 52/159 (32%)
Query: 2 GRNSKKRKERG---DNPFDSRGSENWPEQLGKFLR----FHLYKENKDTQEALGLISKML 54
GRN K G D PFDSRGS WP+ LGKF+R FHLYKENKDTQEALG I KML
Sbjct: 143 GRNRKGTGSSGWRDDKPFDSRGSIIWPDHLGKFIRLCHLFHLYKENKDTQEALGKIGKML 202
Query: 55 GILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQL 114
G+ PRSFGFAGTKDKR+V+TQ+V++
Sbjct: 203 GLQPRSFGFAGTKDKRAVTTQQVSL----------------------------------- 227
Query: 115 LGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQ 153
VV +SEDVIKA+ + L NGFINY+GLQ
Sbjct: 228 ----------SVVTESEDVIKAALDGLITNGFINYYGLQ 256
>gi|452208733|ref|YP_007488847.1| tRNA pseudouridine 13 synthase [Methanosarcina mazei Tuc01]
gi|452098635|gb|AGF95575.1| tRNA pseudouridine 13 synthase [Methanosarcina mazei Tuc01]
Length = 438
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/257 (33%), Positives = 141/257 (54%), Gaps = 8/257 (3%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
GK+L L K + DT +S++L + + AGTKDKR+++TQ++++F AS++
Sbjct: 47 GKYLIVELTKRDWDTHHLTRTLSRILQVSQKRISVAGTKDKRALTTQKISIFDTDASEIE 106
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGV---VVDSEDVIKASANS-LGRN 144
++ L I L ++ + LG L GN F IT+R + ++E ++K + + L +
Sbjct: 107 KIH--LKDIELKVLGRSRKSVELGDLWGNDFRITVRNIENSPEETEALLKKTTDEILAQG 164
Query: 145 GFINYFGLQRFGSGSVPTHLVGATLLRGEW-KSAVKMILDPREGERNEISKAREYYKETD 203
G N+FG+QRFGS THLVG ++ G + K+A+ I +P E E AR++ K+T
Sbjct: 165 GVPNFFGIQRFGSVRPVTHLVGKAIVEGNFEKAALLYIAEPFPEEPEETKNARQFVKDTL 224
Query: 204 DIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASA 263
D L+ P L ERA++ L P +Y + + +P+ L M+VH YQS+++N
Sbjct: 225 DFKEGLKTYPLRLGHERAMMNHLIANPEDYSGSFRVLPQNLYRMFVHGYQSYIYNIILCR 284
Query: 264 RVQKH-GTEHVVVGDLV 279
R++ V GD+V
Sbjct: 285 RIEAGIPLNRAVEGDIV 301
>gi|166796926|gb|AAI58900.1| Unknown (protein for IMAGE:7521894) [Xenopus (Silurana) tropicalis]
Length = 237
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 99/335 (29%), Positives = 139/335 (41%), Gaps = 104/335 (31%)
Query: 199 YKETDDIDGTLRKLPRHLVAERAILQCLKKCP-GNYLQALKAIPRTLRMMYVHSYQSFLW 257
+ +T D + LRKLP E +L+ L N + A IPR R+MY+HSYQS++W
Sbjct: 1 WAKTKDPEAALRKLPVKRCVEGQLLRGLSMYGLKNIVSAFGIIPRNNRLMYIHSYQSYVW 60
Query: 258 NHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPET 317
N+ S R++++G + VV GDLV KGD
Sbjct: 61 NNMVSKRIEEYGLK-VVPGDLVL-KGD--------------------------------- 85
Query: 318 DHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLT 377
V + N YTI+D+V+PLPG VIYP + VA Y + D +++
Sbjct: 86 ----------TAVPVEEGNVDSYTINDIVMPLPGFDVIYPKHKVAAAYEEILAADNLDIK 135
Query: 378 ESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVK 437
H VK++ S+ G YR++ +P D WE+++Y D PL +TDLDK+
Sbjct: 136 NMRHRVKDY---SLAGAYRKIVIRPQDVSWEVVSYDDPKIPLVQTDLDKL---------- 182
Query: 438 EEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQM 497
E +A+ K TE A E P
Sbjct: 183 EGKALPEYK---------------------TEGKYRALKMEFSLP--------------- 206
Query: 498 ALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
S YATMAIRE+LK TS+ LN
Sbjct: 207 ---------PSTYATMAIREVLKMDTSIKNQTQLN 232
>gi|21226216|ref|NP_632138.1| tRNA pseudouridine synthase D [Methanosarcina mazei Go1]
gi|37089035|sp|Q8Q0M2.1|TRUD_METMA RecName: Full=Probable tRNA pseudouridine synthase D; AltName:
Full=tRNA pseudouridine(13) synthase; AltName: Full=tRNA
pseudouridylate synthase D; AltName: Full=tRNA-uridine
isomerase D
gi|20904450|gb|AAM29810.1| conserved protein [Methanosarcina mazei Go1]
Length = 438
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/257 (33%), Positives = 141/257 (54%), Gaps = 8/257 (3%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
GK+L L K + DT +S++L + + AGTKDKR+++TQ++++F AS++
Sbjct: 47 GKYLIVELTKRDWDTHHLTRTLSRILQVSQKRISVAGTKDKRALTTQKISIFDTDASEIE 106
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGV---VVDSEDVIKASANS-LGRN 144
++ L I L ++ + LG L GN F IT+R + ++E ++K + + L +
Sbjct: 107 KIH--LKDIELKVLGRSRKSVELGDLWGNDFRITVRNIENSPEETEALLKKTTDEILAQG 164
Query: 145 GFINYFGLQRFGSGSVPTHLVGATLLRGEW-KSAVKMILDPREGERNEISKAREYYKETD 203
G N+FG+QRFGS THLVG ++ G + K+A+ I +P E E AR++ K+T
Sbjct: 165 GVPNFFGIQRFGSVRPVTHLVGKAIVEGNFEKAALLYIAEPFPEEPEETKNARQFVKDTL 224
Query: 204 DIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASA 263
D L+ P L ERA++ L P +Y + + +P+ L M+VH YQS+++N
Sbjct: 225 DFKEGLKTYPLRLGHERAMMNHLIANPEDYSGSFRVLPQNLYRMFVHGYQSYIYNIILCR 284
Query: 264 RVQKH-GTEHVVVGDLV 279
R++ V GD+V
Sbjct: 285 RIEAGIPLNRAVEGDIV 301
>gi|118580122|ref|YP_901372.1| pseudouridylate synthase [Pelobacter propionicus DSM 2379]
gi|118502832|gb|ABK99314.1| Pseudouridylate synthase [Pelobacter propionicus DSM 2379]
Length = 400
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/253 (33%), Positives = 134/253 (52%), Gaps = 7/253 (2%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L + K T EA+ LI++ L + R G+AG KD V+ Q ++V + R ++A
Sbjct: 39 GEHLYLTIEKRGLTTLEAIRLIARSLSLPEREIGYAGMKDSVGVTRQTISVPRIRPEEVA 98
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
L+ L G++L L LG L GNRF + +R V + A L G N
Sbjct: 99 GLS--LKGVQLISALRHTNKLKLGHLKGNRFNLVVRSVNEGALAAASAILKVLVERGVPN 156
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYYKETDDIDG 207
FG QR+G +HL+GA +LRG+WK AV +++ DP+ ++ A + Y+ D+
Sbjct: 157 RFGYQRYGVQG-NSHLIGAAMLRGDWKGAVDLLMGDPQLLRDDQWRSAIQAYQR-GDVAE 214
Query: 208 TLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQK 267
LR LPRH ER++LQ L PG + +A A+ LR +Y+ +YQS L++ R+ +
Sbjct: 215 ALRLLPRHCDCERSVLQRLVSRPGAWEKAFGAVHPRLRKLYLSAYQSSLFDRVVEERLDR 274
Query: 268 HGTEHVVVGDLVF 280
+ V+ GDL +
Sbjct: 275 --IDRVMEGDLAW 285
>gi|300122514|emb|CBK23084.2| tRNA pseudouridine synthase D [Blastocystis hominis]
Length = 613
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 120/427 (28%), Positives = 184/427 (43%), Gaps = 97/427 (22%)
Query: 32 LRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALN 91
LRF L K N + + ++L I R+ FAG KDK++V+TQ TV A +L A
Sbjct: 215 LRFVLKKTNIELFSLKSRLCQLLHIHERALAFAGIKDKKAVTTQFGTVRNITADQLLAAC 274
Query: 92 KRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFG 151
+L + +G F YV + + +GQL GNRF +TLR V +D ++ + ++ R GF+NYFG
Sbjct: 275 SQLRDVEVGGFSYVSKEIEIGQLWGNRFILTLRNVSCSWKDCVQ-NLKAMNRLGFVNYFG 333
Query: 152 LQRFG----SGSVPTHLVGATLLRGEWKSAVKMILDP------------REGERNEISKA 195
QR G S S+P+ +G LL+ +W AV++ L+P + N I
Sbjct: 334 TQRLGQRDESSSIPSQ-IGCYLLQKQWGKAVRLFLEPSAVFTVRLILSIHTQDDNSIESL 392
Query: 196 REYYKETDDIDGTLRKLPRHLVAERAILQCLKKC-----------PGN-----YLQALKA 239
+ +++ DI G ++ AIL+ + + P + +L L+A
Sbjct: 393 QLFHE--GDIKGAIKHCSISSYVLLAILRTINRFGYDNFKQQFDDPSSQQSELFLSILRA 450
Query: 240 IPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEY 299
IP YV ++QS L+N RVQ H E ++ GD VF D E GC+
Sbjct: 451 IPSEQLTFYVKAFQSLLFNKVLQWRVQ-HFHEAILPGD-VFLHEDSLASE-GCLR----- 502
Query: 300 ESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMN 359
+VVLPL G V P N
Sbjct: 503 --------------------------------------------EVVLPLCGYDVKLPSN 518
Query: 360 DVAEVYHH-LAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDF-----EWELLTYI 413
+V E Y L E G + E K+ S + G+YR + +P++ E + +
Sbjct: 519 EVGEYYDRILKETVGWGM-EGFQ--KDSSPFVLPGSYRCIAAQPLELCGGVETLEAIESL 575
Query: 414 DGNKPLA 420
D N+ +A
Sbjct: 576 DENQAVA 582
>gi|428184832|gb|EKX53686.1| hypothetical protein GUITHDRAFT_100662 [Guillardia theta CCMP2712]
Length = 559
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 107/382 (28%), Positives = 171/382 (44%), Gaps = 69/382 (18%)
Query: 30 KFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAA 89
K+L+F L K DT A+ +I++M I SF FAG KDK ++ Q VT+ + +
Sbjct: 152 KWLKFTLCKMGLDTISAIRIIARMANIPYTSFRFAGIKDKYGITLQEVTLMSHYSHRFRD 211
Query: 90 LNKRLIGIRLGDFCYVKE------GLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGR 143
L ++ G ++ E L G+L GNRF + LR V +D + + S L +
Sbjct: 212 LVSSEYKVKNGKI-WISEVENCSRPLHSGELYGNRFVVVLRNVTLDHK-TMHRSVRRLRK 269
Query: 144 NGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETD 203
GF+NYFG+QRFG GS+P+ G LL + V+ I+ R + +A+E Y++
Sbjct: 270 GGFLNYFGMQRFGGGSIPSLEAGRHLLLMNHSAFVQSIMSTRLSTNKQEIEAKELYEKNG 329
Query: 204 DIDGTLRKLPRHLVAERAILQCLKKCPGNYLQ----------ALKAIPRTLRMMYVHSYQ 253
G L HLV+E + + +L+ A+ AIP + ++V SY
Sbjct: 330 --AGFL----WHLVSE-----SMNQAEKQFLEARNLHIFCRAAVSAIP--FKSLFVQSYL 376
Query: 254 SFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDE 313
S LWN A S R++++G++ V GD++ L E
Sbjct: 377 SGLWNEACSYRIKRYGSKQAVEGDII-------------------------------LLE 405
Query: 314 VPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPL--PGSRVIYPMNDVAEVYHHLAEK 371
+ +K V+ D + Y+I DVVLP+ G RV+ P N + + K
Sbjct: 406 TIGGGQKGKKMQKIKIVSEQDAKNRTYSILDVVLPMFAEGRRVVLPRNRMGKWL-----K 460
Query: 372 DGINLTESLHNVKEFSITSMTG 393
+ + +H +K I + G
Sbjct: 461 KRMKVENIMHTMKVVEIEDVDG 482
>gi|380797065|gb|AFE70408.1| pseudouridylate synthase 7 homolog, partial [Macaca mulatta]
Length = 227
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 96/325 (29%), Positives = 142/325 (43%), Gaps = 104/325 (32%)
Query: 209 LRKLPRHLVAERAILQCLKKC-PGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQK 267
LRKLP E +L+ L K N + A IPR R+MY+HSYQS++WN+ S R++
Sbjct: 1 LRKLPVKRCVEGQLLRGLSKYGMKNIVSAFGIIPRNNRLMYIHSYQSYVWNNMVSKRIED 60
Query: 268 HGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLV 327
+G + V GDLV KG +S+++E
Sbjct: 61 YGLKPVP-GDLVL-KGAT----------------------ASYIEE-------------- 82
Query: 328 KTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFS 387
D+N+ Y+I DVV+PLPG VIYP + + E Y + D +++ H ++++
Sbjct: 83 -----DDVNN--YSIHDVVMPLPGFDVIYPKHKIQEAYREMLTADNLDIDNMRHKIRDY- 134
Query: 388 ITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKE 447
S++G YR++ +P + WE++ Y D PL TD+D +
Sbjct: 135 --SLSGAYRKIIIRPQNVSWEVVAYDDPIIPLFNTDVDNL-------------------- 172
Query: 448 KDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPS 507
E K P V + S+GK ALK+ +LP
Sbjct: 173 ------------------------------EGKPPPVFA-----SEGKYRALKMDFSLPP 197
Query: 508 SCYATMAIRELLKTSTSVAFHKTLN 532
S YATMAIRE+LK TS+ LN
Sbjct: 198 STYATMAIREVLKMDTSIKNQTQLN 222
>gi|312136721|ref|YP_004004058.1| tRNA pseudouridine synthase d trud [Methanothermus fervidus DSM
2088]
gi|311224440|gb|ADP77296.1| tRNA pseudouridine synthase D TruD [Methanothermus fervidus DSM
2088]
Length = 411
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 89/265 (33%), Positives = 141/265 (53%), Gaps = 14/265 (5%)
Query: 25 PEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRA 84
P G+ + + K N+ T + + I+K L I R GFAG KDK +V+ Q + V
Sbjct: 35 PSGKGQNVWIWIEKRNRTTLDVVIDIAKKLHIDRRRMGFAGMKDKYAVARQWICVSNIDP 94
Query: 85 SKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGV--VVDSEDVIKASANSLG 142
++ L R G++ ++ L LGQL+GN+F I +R V ++ K + +L
Sbjct: 95 DEIKNLKIR--GVKFLKIVRHEKKLRLGQLIGNKFRIIVRNVKNPKNAAKDAKKTFKTLS 152
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYYKE 201
G NY+G QRFG THL+G L++ + K AV + + +P GE +I KAR+ Y +
Sbjct: 153 EIGVPNYYGWQRFGKPRSNTHLIGKALIKNDLKKAVDLYVGNPFPGEPEKIKKARKLY-D 211
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKKCPG-------NYLQALKAIPRTLRMMYVHSYQS 254
+I+ + +P+ L ER IL+ L K +YL+A+ A+P+ L M++H+YQS
Sbjct: 212 LGEIEKSYESMPKTLQYERTILRILLKDKKKGKLDDKSYLKAILALPKPLTRMFIHAYQS 271
Query: 255 FLWNHAASARVQKHGTEHVVVGDLV 279
+L+N S R K G V GD++
Sbjct: 272 YLFNKVVSERC-KLGINKYVEGDIL 295
>gi|410671806|ref|YP_006924177.1| tRNA pseudouridine synthase D [Methanolobus psychrophilus R15]
gi|409170934|gb|AFV24809.1| tRNA pseudouridine synthase D [Methanolobus psychrophilus R15]
Length = 438
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 83/262 (31%), Positives = 136/262 (51%), Gaps = 12/262 (4%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
GK L L K N D IS+ LGI + GFAGTKDKR+ +TQ+++++ + +
Sbjct: 47 GKQLILELTKSNWDMHHLARDISRKLGISQKRIGFAGTKDKRAKTTQKISIYDGKEEDIK 106
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDV------IKASANSLG 142
+ L + L + + LG L GN F IT+R + +++ I A N+ G
Sbjct: 107 SFY--LKDVELKVIGRSERSVELGDLFGNEFVITIRDIGHGPQELRGILEGITAELNTFG 164
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEW-KSAVKMILDPREGERNEISKAREYYKE 201
G N+FG+QRFG+ THLVG +L G+ K+A+ I E +++ + R+
Sbjct: 165 --GVPNFFGIQRFGAIRPVTHLVGREILLGDLEKAAMTYIARSFPDEPDDVREVRDLVWN 222
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAA 261
T D L+ P L ERA++ L + PG+Y + + + + + M+VH+YQS+++N
Sbjct: 223 TRDFAQGLKIYPLRLRYERAMMHYLVENPGDYAGSFRVLAQNISKMFVHAYQSYMFNRMI 282
Query: 262 SARVQK-HGTEHVVVGDLVFCK 282
R+++ + V GD+V K
Sbjct: 283 CKRIEEGMPLDAAVPGDIVCFK 304
>gi|355572985|ref|ZP_09043953.1| tRNA pseudouridine synthase D [Methanolinea tarda NOBI-1]
gi|354823997|gb|EHF08256.1| tRNA pseudouridine synthase D [Methanolinea tarda NOBI-1]
Length = 423
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 90/270 (33%), Positives = 133/270 (49%), Gaps = 16/270 (5%)
Query: 25 PEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRA 84
P G +L L K N + Q A I++ LGI R + GTKD +++TQ + ++ R
Sbjct: 44 PGDEGPYLVCRLTKRNWEMQRAAREIARQLGISHRRVSWTGTKDTHALTTQLIAIYGVRE 103
Query: 85 SKLAALNKRLIGIRLGDFCYVKEG-----LLLGQLLGNRFTITLRGVVVDSEDVIKASAN 139
+ +A + LGD V G L LG GNRF+IT+R A
Sbjct: 104 NDIARVT-------LGDIEIVPVGRSQQPLSLGGHEGNRFSITIRDTRSSDPGRELAEVA 156
Query: 140 SLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPR-EGERNEISKAREY 198
R G NYFG+QRFG THLVG +L+G+ + AV + GE + +AR
Sbjct: 157 ETCRQGIPNYFGIQRFGVARPVTHLVGLHILKGDLEGAVTCYIGRACPGEDPAVREARGE 216
Query: 199 YKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWN 258
+ + D LR P L ERA+L L PG+Y AL ++P L ++V ++QS L+N
Sbjct: 217 FLSSRDPAAALRSFPVTLSYERAMLHHLVSHPGDYRGALCSLPPRLLSLFVSAFQSHLFN 276
Query: 259 HAASARVQKHGTEHVV--VGD-LVFCKGDD 285
S+R+++ G + + GD L+F G +
Sbjct: 277 CTVSSRMERLGDDFRIPHAGDRLLFSDGKE 306
>gi|296109370|ref|YP_003616319.1| tRNA pseudouridine synthase D TruD [methanocaldococcus infernus ME]
gi|295434184|gb|ADG13355.1| tRNA pseudouridine synthase D TruD [Methanocaldococcus infernus ME]
Length = 428
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/246 (34%), Positives = 132/246 (53%), Gaps = 16/246 (6%)
Query: 22 ENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFK 81
+NW G F+ F L K+N T +A+ I+ LG+ + FGFAG KDK +V+TQRV F
Sbjct: 87 DNWK---GSFIHFTLEKKNWTTLDAIREIANRLGVPRKHFGFAGNKDKYAVTTQRVGCFN 143
Query: 82 QRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSL 141
+ KL +L ++ I L DF V + LG L GNRFTI +R D E+ L
Sbjct: 144 IKLEKLKSL--KIKNIVLRDFQKVNWKIKLGDLWGNRFTIRVREPEKDLEN--------L 193
Query: 142 GRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYYK 200
+ F+NY+G+QRFG+ TH+VG ++ +W+ A + P + + ARE
Sbjct: 194 EMSYFLNYYGIQRFGTTRPITHVVGKFIIERDWERAFYLYCGTPLRFDDEKSRIARELVD 253
Query: 201 ETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
E + + PR ER +++ + + G+Y +A +P LR M+V++YQS+L+N
Sbjct: 254 E-GEFKEAYKLFPRCFFYERKMIKRVIET-GDYKKAFLILPPYLRCMFVNAYQSYLFNEL 311
Query: 261 ASARVQ 266
+ R +
Sbjct: 312 INRRYE 317
>gi|256811309|ref|YP_003128678.1| tRNA pseudouridine synthase D TruD [Methanocaldococcus fervens
AG86]
gi|256794509|gb|ACV25178.1| tRNA pseudouridine synthase D TruD [Methanocaldococcus fervens
AG86]
Length = 430
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 134/256 (52%), Gaps = 9/256 (3%)
Query: 17 DSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQR 76
+ + ENW G F+ F L K N T +A+ I+ +G + FGFAG KDK +++TQR
Sbjct: 82 EFKDEENWK---GNFIHFTLEKRNWTTLDAIREIANRVGKQRKHFGFAGNKDKHAITTQR 138
Query: 77 VTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKA 136
V F + L + ++ GI L DF + LG L GNRFTI +R + +++ +
Sbjct: 139 VGCFNVKLEDLKKV--KIKGIVLRDFQKTNRKIRLGDLWGNRFTIRVREPEIKGKELEEV 196
Query: 137 SANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKA 195
F+NY+G+QRFG+ TH+VG ++ +W+ A P + + + A
Sbjct: 197 LNKLCKLKYFLNYYGIQRFGTTRPITHIVGRLIIERDWEGAFHAYCGTPLPYDDKKSTLA 256
Query: 196 REYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSF 255
RE E ++ +K P+ ER +++ + G+Y +A +P LR M++++YQS+
Sbjct: 257 RELVDE-ENFKEAYKKFPKAFFYERRMIKAYIET-GSYQKAFMILPPHLRCMFINAYQSY 314
Query: 256 LWNHAASARVQKHGTE 271
L+N + R + +G E
Sbjct: 315 LFNEIINRRFE-YGFE 329
>gi|39995627|ref|NP_951578.1| tRNA pseudouridine 13 synthase [Geobacter sulfurreducens PCA]
gi|409911085|ref|YP_006889550.1| tRNA pseudouridine 13 synthase [Geobacter sulfurreducens KN400]
gi|42559715|sp|P60347.1|TRUD_GEOSL RecName: Full=tRNA pseudouridine synthase D; AltName: Full=tRNA
pseudouridine(13) synthase; AltName: Full=tRNA
pseudouridylate synthase D; AltName: Full=tRNA-uridine
isomerase D
gi|39982390|gb|AAR33851.1| tRNA pseudouridine 13 synthase [Geobacter sulfurreducens PCA]
gi|298504649|gb|ADI83372.1| tRNA pseudouridine 13 synthase [Geobacter sulfurreducens KN400]
Length = 408
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 132/245 (53%), Gaps = 9/245 (3%)
Query: 38 KENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGI 97
K T EA+ + + G R G+AG KD R ++ Q V++ + +++ LN + GI
Sbjct: 52 KRGITTLEAIRRLCRATGAPERDTGYAGMKDARGITRQTVSLPRVTPAEVMGLN--IPGI 109
Query: 98 RLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFG- 156
R+ + L LG L GNRF + LR V D+ D +A + L R G N FG QR+G
Sbjct: 110 RILSADRHRNKLRLGHLAGNRFRLRLRETVPDAADRARAILDVLARRGVPNRFGEQRYGI 169
Query: 157 SGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYYKETDDIDGTLRKLPRH 215
G+ +HLVG +L G+W+ AV +++ DP + E A E Y++ D+ G+L P H
Sbjct: 170 QGN--SHLVGRAMLAGDWRGAVDLLMGDPAKVEGERWRAAIEAYRQ-GDLAGSLSLFPGH 226
Query: 216 LVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVV 275
ER +LQ L K P ++ +A+ + L+ +Y+ + QS L++ R+Q +HV+
Sbjct: 227 CRTERDVLQRLAKRPDDFERAVHGVHPRLKKLYLSACQSALFDRVLETRLQT--IDHVME 284
Query: 276 GDLVF 280
GDL +
Sbjct: 285 GDLAW 289
>gi|321457541|gb|EFX68625.1| hypothetical protein DAPPUDRAFT_62909 [Daphnia pulex]
Length = 356
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 110/415 (26%), Positives = 170/415 (40%), Gaps = 99/415 (23%)
Query: 116 GNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFG-SGSVPTHLVGATLLRGEW 174
GN +TI L+ V+ +E I ++ SL GF+NYF + F + + H +G +L +W
Sbjct: 4 GNHYTIALKQVM-GNETHINSNLKSLKEKGFVNYFESECFEINRRLSMHFIGKNVLMEQW 62
Query: 175 KSAVKMILDPREG--ERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGN 232
V +ILDP+ E+ + ++T KL E ++ CLKKC
Sbjct: 63 LEVVNLILDPQFNCPEKLYGQQYVALLEKTSKNAFEDSKLMDKHSMESEMIFCLKKCGSM 122
Query: 233 YLQALKA-IPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELG 291
L L + +PR R+ Y+ +YQ ++WN AS R+ K G + ++GDLV+ G
Sbjct: 123 RLHLLASLVPRPNRLNYIRAYQQYIWNTVASKRIAKFGLKP-IIGDLVYAPASG-----G 176
Query: 292 CVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPG 351
C D + V +T +I++ YTI+D++LPLPG
Sbjct: 177 C-------------------------DAVSDENGTVLFITEGNIHN--YTINDILLPLPG 209
Query: 352 S-RVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELL 410
S IYP N+VA Y L DGI L + ++G YR + ++P + W+ +
Sbjct: 210 SDDTIYPSNEVAGWYTDLLLMDGI-----LDFKERIGSYIISGEYRLLIRRPSELTWKFV 264
Query: 411 TYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTEN 470
Y D + L +DLD++ N
Sbjct: 265 RYDDASMNLISSDLDRLL-----------------------------------------N 283
Query: 471 NEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSV 525
C E G + L L LP S YA+M +RE++K SV
Sbjct: 284 RREPCLVE--------------DGAFLGLVLEFNLPPSAYASMTLREIVKMDKSV 324
>gi|147919186|ref|YP_687079.1| tRNA pseudouridine synthase D [Methanocella arvoryzae MRE50]
gi|110622475|emb|CAJ37753.1| putative tRNA pseudouridine synthase D [Methanocella arvoryzae
MRE50]
Length = 431
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/245 (35%), Positives = 128/245 (52%), Gaps = 9/245 (3%)
Query: 27 QLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASK 86
+ G +L L KEN +T + +S+ LGI G AGTKDKR+++TQ ++++
Sbjct: 47 ETGGYLVARLTKENWETHHLIRDLSRQLGISDDRIGLAGTKDKRAITTQLISIYGVTEDD 106
Query: 87 LAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSL----- 141
L + L IRL L+LG L GN F I + GV + +E I+A +S+
Sbjct: 107 LKKIT--LPRIRLTPVGRSSRPLVLGDLEGNNFDIRISGVAM-AEPEIRARLDSITGEIS 163
Query: 142 GRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWK-SAVKMILDPREGERNEISKAREYYK 200
G N+FG QRFG THLVG L+RG+ + +A+ I E E +AR+Y
Sbjct: 164 ATGGVPNFFGYQRFGIRRPITHLVGEKLIRGDLEGAAMDYIARSFPDENPENIEARDYVF 223
Query: 201 ETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
T D L +L ER ++ L + PG+Y A +++P TL M+V +YQS+L+N
Sbjct: 224 RTRDFKKGLDMYALNLRYERTMMHRLIERPGDYAGAFRSLPGTLMKMFVSAYQSYLFNRM 283
Query: 261 ASARV 265
S R+
Sbjct: 284 LSQRL 288
>gi|432329210|ref|YP_007247354.1| tRNA pseudouridine synthase, TruD family [Aciduliprofundum sp.
MAR08-339]
gi|432135919|gb|AGB05188.1| tRNA pseudouridine synthase, TruD family [Aciduliprofundum sp.
MAR08-339]
Length = 410
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/253 (33%), Positives = 139/253 (54%), Gaps = 15/253 (5%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
GK L + N +T + ++SK LG+ R FAG KDKR ++ Q + +
Sbjct: 45 GKNLFLKVRLRNWETNRFVKILSKSLGMSRRRIKFAGNKDKRGITVQYFCILNYQGD--- 101
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFI- 147
L+ L + + + + L +G L GNRF I L+ + D D ++ + L NGF
Sbjct: 102 -LSIHLKDVEILEIFRSDQCLEIGDLYGNRFDILLQDTICD--DRVEKIEDEL--NGFFP 156
Query: 148 NYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILD-PREGERNEISKAREYYKETDDID 206
N+FG+QRFG+ THLVG +++G ++ AV+ + P E ++ R+ + E D
Sbjct: 157 NFFGVQRFGASRPITHLVGKFIIQGNYRDAVRYYVGFPSTFEHDD---GRKIFFENMDPL 213
Query: 207 GTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQ 266
+++L ++ ERAIL L K PG+Y+ AL+ +P+ L +++VH YQS+L+N S R+
Sbjct: 214 AAIKELDKNASYERAILNYLIKNPGDYVGALRELPKNLLLLFVHGYQSYLFNKILSERLM 273
Query: 267 KHGTEHVVVGDLV 279
GT+ + VGD+V
Sbjct: 274 I-GTD-LKVGDVV 284
>gi|15668768|ref|NP_247567.1| hypothetical protein MJ_0588 [Methanocaldococcus jannaschii DSM
2661]
gi|1591296|gb|AAB98579.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
2661]
Length = 430
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/258 (31%), Positives = 138/258 (53%), Gaps = 13/258 (5%)
Query: 17 DSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQR 76
+ + ENW G ++ F L K N T +A+ I+ +G + FGFAG KDK +V+TQR
Sbjct: 82 EFKDEENWK---GNYIHFTLEKRNWTTLDAIREIANRVGKQRKHFGFAGNKDKYAVTTQR 138
Query: 77 VTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKA 136
V F + L + ++ GI L DF + LG L GNRFTI +R + +++ +A
Sbjct: 139 VGCFNVKLEDLMKV--KIKGIILRDFQKTNRKIRLGDLWGNRFTIRVREPELKGKELEEA 196
Query: 137 SANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILD---PREGERNEIS 193
F+NY+G+QRFG+ TH+VG ++ +W+ A P + +++++
Sbjct: 197 LNKLCKLKYFLNYYGVQRFGTTRPITHIVGRFIIERDWEGAFHAYCGTPLPYDDKKSKL- 255
Query: 194 KAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQ 253
ARE E ++ +K P+ ER +++ + G+Y +A +P LR M++++YQ
Sbjct: 256 -ARELVDE-ENFKEAYKKFPKAFFYERRMIKAYIET-GSYQKAFMILPPYLRCMFINAYQ 312
Query: 254 SFLWNHAASARVQKHGTE 271
S+L+N + R + +G E
Sbjct: 313 SYLFNEIINRRFE-YGFE 329
>gi|167515790|ref|XP_001742236.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778860|gb|EDQ92474.1| predicted protein [Monosiga brevicollis MX1]
Length = 3017
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/246 (34%), Positives = 127/246 (51%), Gaps = 13/246 (5%)
Query: 36 LYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTV--FKQRASKLAALNKR 93
+ K+ +T L I+ + I G AGTKDKR+++TQ +T+
Sbjct: 280 MRKQGLETSHFLEEIANLFAIRTSHVGVAGTKDKRAITTQLLTLRGVTPAQVLQQQQALS 339
Query: 94 LIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQ 153
+ I LG +E L LGQL GNRF I +R V S V+ + + L NGF+N++G Q
Sbjct: 340 DLQIELGGAWLAREQLTLGQLYGNRFKILIRDVT-HSRSVVDHALSFLRDNGFVNFYGTQ 398
Query: 154 RFGSG--SVPTHLVGATLLRGEWKSAVKMILDPREGERN-EISKARE----YYKETDDID 206
RFGS + H VG +L+ ++ AV++ + P +R+ S+AR+ + +D
Sbjct: 399 RFGSADSTAGPHQVGRLILQRKYLEAVRLWMAPDPADRSMASSRARQRLVSFPWSRSQLD 458
Query: 207 GTLRKLPRHLVAERAILQCLKK---CPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASA 263
L +PR V ILQ L++ LQALK +P T R+ VH+Y S+LWN A
Sbjct: 459 QALAMMPRSRVQVIRILQGLRRFGVSDEGALQALKGLPFTQRLFPVHAYTSYLWNQLAYQ 518
Query: 264 RVQKHG 269
RV+++G
Sbjct: 519 RVERYG 524
>gi|52550411|gb|AAU84260.1| conserved hypothetical protein [uncultured archaeon GZfos9C4]
Length = 455
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/270 (32%), Positives = 144/270 (53%), Gaps = 16/270 (5%)
Query: 26 EQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRAS 85
++ GK+L L KEN DT + IS+ L + GFAGTKDK +V+TQ+++++ + +
Sbjct: 47 QEEGKYLIAVLTKENWDTHSVINEISRRLRVSRNRIGFAGTKDKVAVTTQKISIWGEDIA 106
Query: 86 KLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDV---IKASANSLG 142
+ ++ + L + + LG L GN F I +R + E++ I A +
Sbjct: 107 ETELERLKIADVSLKLIGRSNKAVSLGDLHGNEFEIVVRDIEGSKEEIKRKIAAITAEIA 166
Query: 143 RNGFI-NYFGLQRFGSGSVPTHLVGATLLRGEWKSAV-KMILDPREGERNEISKAREYYK 200
+G + N+FG+QRFG TH+VG L+RGE K AV I D E E +AR K
Sbjct: 167 NDGGVPNFFGVQRFGIRRPITHVVGKHLIRGELKEAVLSYISDVFPDESEEAKQARRLCK 226
Query: 201 ETD--DIDGTLRKLPRHLVAERAILQCLKK--------CPGNYLQALKAIPRTLRMMYVH 250
E + + L+K+P L E+A+L L K ++L A +P+ L+ ++VH
Sbjct: 227 EGELKGLKDGLKKMPPFLRYEKAMLNELVKNGRGRESINESDFLSAFSVLPKNLQKLFVH 286
Query: 251 SYQSFLWNHAASARVQKH-GTEHVVVGDLV 279
+YQ++L+N S R++++ + +VGD+V
Sbjct: 287 AYQAYLFNLVLSRRMKQNLPFDEALVGDVV 316
>gi|408381216|ref|ZP_11178766.1| tRNA pseudouridine synthase D [Methanobacterium formicicum DSM
3637]
gi|407816481|gb|EKF87043.1| tRNA pseudouridine synthase D [Methanobacterium formicicum DSM
3637]
Length = 417
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/255 (31%), Positives = 136/255 (53%), Gaps = 15/255 (5%)
Query: 38 KENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGI 97
K ++ T E + I++ L I + GFAG KDK++V+ Q + + + +L + +L +
Sbjct: 48 KNSRTTLEVVLDIARELKINRKQMGFAGMKDKKAVTRQWICISNKTPEELQGIEDKLHHV 107
Query: 98 RLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASA---NSLGRNGFINYFGLQR 154
++ ++ L +GQL+GN+F + +R + D E + + + L G NY+G QR
Sbjct: 108 KILKITPNQKKLRMGQLVGNKFRLMVRN-LEDPESAAQEAEEILSELKERGVPNYYGYQR 166
Query: 155 FGSGSVPTHLVGATLLRGEWKSAV-KMILDPREGERNEISKAREYYKETDDIDGTLRKLP 213
FG THLVG L++G K AV + I P + E I +AR +Y E ++ +L +P
Sbjct: 167 FGKDRPNTHLVGKALIKGGVKEAVDRYIGHPYDTEPKHIQEARRFYDE-GELGESLASMP 225
Query: 214 RHLVAERAILQCLKK--------CPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARV 265
+ E+ +L L K +Y+ AL++IP+ L M+VH+YQS+L+N S R
Sbjct: 226 SGMRYEKMMLHTLIKEEKKRGELNEKSYILALRSIPKPLSRMFVHAYQSYLFNKVVSERT 285
Query: 266 QKHGTEHVVVGDLVF 280
K G + V GD++
Sbjct: 286 -KLGIDQYVKGDILI 299
>gi|37142616|sp|Q58008.2|TRUD1_METJA RecName: Full=Probable tRNA pseudouridine synthase D 1; AltName:
Full=tRNA pseudouridine(13) synthase; AltName: Full=tRNA
pseudouridylate synthase D 1; AltName: Full=tRNA-uridine
isomerase D 1
Length = 392
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/258 (31%), Positives = 138/258 (53%), Gaps = 13/258 (5%)
Query: 17 DSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQR 76
+ + ENW G ++ F L K N T +A+ I+ +G + FGFAG KDK +V+TQR
Sbjct: 44 EFKDEENWK---GNYIHFTLEKRNWTTLDAIREIANRVGKQRKHFGFAGNKDKYAVTTQR 100
Query: 77 VTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKA 136
V F + L + ++ GI L DF + LG L GNRFTI +R + +++ +A
Sbjct: 101 VGCFNVKLEDLMKV--KIKGIILRDFQKTNRKIRLGDLWGNRFTIRVREPELKGKELEEA 158
Query: 137 SANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILD---PREGERNEIS 193
F+NY+G+QRFG+ TH+VG ++ +W+ A P + +++++
Sbjct: 159 LNKLCKLKYFLNYYGVQRFGTTRPITHIVGRFIIERDWEGAFHAYCGTPLPYDDKKSKL- 217
Query: 194 KAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQ 253
ARE E ++ +K P+ ER +++ + G+Y +A +P LR M++++YQ
Sbjct: 218 -ARELVDE-ENFKEAYKKFPKAFFYERRMIKAYIET-GSYQKAFMILPPYLRCMFINAYQ 274
Query: 254 SFLWNHAASARVQKHGTE 271
S+L+N + R + +G E
Sbjct: 275 SYLFNEIINRRFE-YGFE 291
>gi|149017635|gb|EDL76639.1| rCG59252 [Rattus norvegicus]
Length = 544
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 117/208 (56%), Gaps = 12/208 (5%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
+ F L KEN + EA+G ++ LG++P F +AG KDK++++ Q + V K +L +
Sbjct: 311 YTAFTLQKENLEMFEAIGFLAIQLGVIPSDFSYAGLKDKKAITYQSMVVRKVTPERLKTI 370
Query: 91 NKRLIGIRLGDFCY--VKEGLLLGQLLGNRFTITLRGVVVDSED-------VIKASANSL 141
+ + R+ F V + L LGQL GN F I +R + D V++A N +
Sbjct: 371 EEEIKKKRMNVFNVRSVDDSLRLGQLKGNHFEIIIRNLRNQPNDSANLRERVLEAIEN-V 429
Query: 142 GRNGFINYFGLQRFGSG-SVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYK 200
GF+NY+G QRFG G + T +G LL+ E A+K+ L P + + + ++KA++Y+
Sbjct: 430 KNKGFVNYYGPQRFGKGKKIQTDRIGLALLKNEMVKAIKLFLTPEDAD-DPVNKAKKYFL 488
Query: 201 ETDDIDGTLRKLPRHLVAERAILQCLKK 228
+T+D GTL +P V ERA+L+ L +
Sbjct: 489 QTEDAKGTLSLMPEFRVRERALLESLHR 516
>gi|13542211|ref|NP_111899.1| tRNA pseudouridine synthase D [Thermoplasma volcanium GSS1]
gi|37089625|sp|Q978K9.1|TRUD_THEVO RecName: Full=Probable tRNA pseudouridine synthase D; AltName:
Full=tRNA pseudouridine(13) synthase; AltName: Full=tRNA
pseudouridylate synthase D; AltName: Full=tRNA-uridine
isomerase D
gi|14325645|dbj|BAB60548.1| hypothetical protein [Thermoplasma volcanium GSS1]
Length = 409
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 111/424 (26%), Positives = 198/424 (46%), Gaps = 53/424 (12%)
Query: 25 PEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRA 84
P+ GK+ + DT I++ L + + FAGTKDKR+V Q +
Sbjct: 30 PDPNGKYTIIKARVRDWDTNRIAAEIARRLHMSRKRVTFAGTKDKRAVKLQYFCI-NSAD 88
Query: 85 SKLAALNKRLIGIRLGDFCYVK-----EGLLLGQLLGNRFTITLRGVVVDSEDVIKASAN 139
+A+L+ GI+ DF ++ L LG L+ N F I G+ D E + +
Sbjct: 89 VDVASLS----GIK--DFEVIESFKSSHYLTLGDLIANHFKIRFYGI--DPEMFRERYVH 140
Query: 140 SLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYY 199
+ + GF N+FG QRFGS TH +G +++GE++ AVK + E+ + R+++
Sbjct: 141 IISKGGFPNFFGDQRFGSRRRNTHEIGKLIIKGEYEEAVKKYI---YDEKYDKESYRKHF 197
Query: 200 KETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNH 259
+T D L + P L ER+++ + G + A ++P+ L +M+VH+YQS+L+N
Sbjct: 198 IDTLDYKTALERFPHSLSFERSLIGYYARN-GTFKGAFDSLPKNLTIMFVHAYQSYLFNR 256
Query: 260 AASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDH 319
R++ +G V+ GD+ F V+ F + S + +S+
Sbjct: 257 ILDERLKIYGLNAVLPGDIAF-----------PVDAYFNPDKSKPIEVNSY--------- 296
Query: 320 PDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTES 379
R + K V++ I + LP+ G + +D +V + + +++GI+ +
Sbjct: 297 --NREKISKLVSSDKIR--------ISLPIFGYKTWIDNSDFGDVEYGILKEEGIS-QDD 345
Query: 380 LHNVKEFSITSMTGNYRRVFQKPMDFEWE--LLTYIDGNKPLAETDLDKIAKAKLVNIVK 437
N K+F+ S +G+ R + KP++F E ++ + G A L I + K N+
Sbjct: 346 FKN-KDFAYLSSSGDRRIISAKPINFSLENNVVEFTLGKGIYATVFLSSIGRLK-ENVYS 403
Query: 438 EEEA 441
+ EA
Sbjct: 404 DSEA 407
>gi|66361302|pdb|1Z2Z|A Chain A, Crystal Structure Of The Putative Trna Pseudouridine
Synthase D (Trud) From Methanosarcina Mazei, Northeast
Structural Genomics Target Mar1
gi|66361303|pdb|1Z2Z|B Chain B, Crystal Structure Of The Putative Trna Pseudouridine
Synthase D (Trud) From Methanosarcina Mazei, Northeast
Structural Genomics Target Mar1
Length = 446
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 138/257 (53%), Gaps = 8/257 (3%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
GK+L L K + DT +S++L + + AGTKDKR+++TQ++++F AS++
Sbjct: 47 GKYLIVELTKRDWDTHHLTRTLSRILQVSQKRISVAGTKDKRALTTQKISIFDTDASEIE 106
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGV---VVDSEDVIKASANS-LGRN 144
++ L I L ++ + LG L GN F IT+R + ++E ++K + + L +
Sbjct: 107 KIH--LKDIELKVLGRSRKSVELGDLWGNDFRITVRNIENSPEETEALLKKTTDEILAQG 164
Query: 145 GFINYFGLQRFGSGSVPTHLVGATLLRGEW-KSAVKMILDPREGERNEISKAREYYKETD 203
G N+FG+QRFGS THLVG ++ G + K+A+ I +P E E AR++ K+T
Sbjct: 165 GVPNFFGIQRFGSVRPVTHLVGKAIVEGNFEKAALLYIAEPFPEEPEETKNARQFVKDTL 224
Query: 204 DIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASA 263
D L+ P L ERA L P +Y + + +P+ L +VH YQS+++N
Sbjct: 225 DFKEGLKTYPLRLGHERAXXNHLIANPEDYSGSFRVLPQNLYRXFVHGYQSYIYNIILCR 284
Query: 264 RVQKH-GTEHVVVGDLV 279
R++ V GD+V
Sbjct: 285 RIEAGIPLNRAVEGDIV 301
>gi|335437986|ref|ZP_08560743.1| tRNA pseudouridine synthase D [Halorhabdus tiamatea SARL4B]
gi|334893590|gb|EGM31801.1| tRNA pseudouridine synthase D [Halorhabdus tiamatea SARL4B]
Length = 452
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 89/263 (33%), Positives = 133/263 (50%), Gaps = 23/263 (8%)
Query: 42 DTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGD 101
DT + ++S LGI +AGTKDK + +TQ +V K ++L A++ + I L
Sbjct: 67 DTNDFASVLSDSLGISRERVSWAGTKDKHARTTQLFSVTKVDPAELDAIDLSEVEIEL-- 124
Query: 102 FCYVKEGLLLGQLLGNRFTITLR--------GVVVDSEDVIKASANSLG------RNGFI 147
+L G L GN F I + V+D SA+ G R G
Sbjct: 125 LGRSGRPILFGDLAGNAFEIEISEPDAPGNLDAVLDELAAFAGSASGGGEDDGSTRIGVP 184
Query: 148 NYFGLQRFGSGSVPTHLVGATLLRGEWKSAV-KMILDPREGERNEISKAREYYKETDDID 206
NYFG QRFGS TH VG + RG+WK AV + +P E ER + +AR Y ET+D
Sbjct: 185 NYFGQQRFGSQRPVTHEVGLAIARGDWKDAVLSYVGNPHEREREDTREARRYVTETEDWQ 244
Query: 207 GTLRKLPRHLVAERAILQCLKKC----PGNYLQALKAIPRTLRMMYVHSYQSFLWNHAAS 262
G L +LP+ L ER++ L + ++ +AL A+P L+ ++V++ QS+ +N S
Sbjct: 245 GALDRLPKRLGYERSMCHRLAENGTDESEDFQEALAAVPTNLQQLFVNAAQSYAFNRILS 304
Query: 263 ARVQKH-GTEHVVVGDLVFCKGD 284
AR+++ + V GD+V C D
Sbjct: 305 ARLERGLPFDEPVAGDVV-CFAD 326
>gi|282163841|ref|YP_003356226.1| probable tRNA pseudouridine synthase D [Methanocella paludicola
SANAE]
gi|282156155|dbj|BAI61243.1| probable tRNA pseudouridine synthase D [Methanocella paludicola
SANAE]
Length = 434
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 84/242 (34%), Positives = 127/242 (52%), Gaps = 7/242 (2%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G FL L KEN +T + +S+ LGI G AGTKDKR+V+TQ +++ +L+
Sbjct: 50 GDFLIVRLTKENWETHHLIRDLSRQLGISEERIGIAGTKDKRAVTTQLMSIRGASEEQLS 109
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGV---VVDSEDVIKA-SANSLGRN 144
++ L +RL + + LG L GN F IT+R + + + E ++A AN
Sbjct: 110 RID--LPRVRLEPLGRANKDIGLGDLRGNDFDITVRNISLPLAECEARLRAIDANMAKAG 167
Query: 145 GFINYFGLQRFGSGSVPTHLVGATLLRGEWK-SAVKMILDPREGERNEISKAREYYKETD 203
G N+FG QRFG THLVG LL G+ + +A+ I GE E K R T
Sbjct: 168 GIPNFFGYQRFGIVRPITHLVGKKLLTGDVEGAAMDYIARSFPGESEENKKVRNMVMGTR 227
Query: 204 DIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASA 263
D +R P +L ER ++ L + PG+Y A +++ L +++H+YQS+L+N S
Sbjct: 228 DFKEGIRLYPLNLRYERTMMHHLIERPGDYAGAFRSLSPKLLKLFIHAYQSYLFNKLLSR 287
Query: 264 RV 265
R+
Sbjct: 288 RL 289
>gi|424814517|ref|ZP_18239695.1| conserved hypothetical protein TIGR00094 family [Candidatus
Nanosalina sp. J07AB43]
gi|339758133|gb|EGQ43390.1| conserved hypothetical protein TIGR00094 family [Candidatus
Nanosalina sp. J07AB43]
Length = 387
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 121/239 (50%), Gaps = 10/239 (4%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G + L K+N T EA+G +S ML I G+AG KDKR+VS Q +++ ++
Sbjct: 45 GDHMVVQLRKQNMTTLEAIGKLSNMLHISRDRIGYAGNKDKRAVSEQYISI-----QGVS 99
Query: 89 ALNKRLIGIRLGDFCYVKEG--LLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGR--N 144
+ I D + EG + LG L NRF I +R + + ED + + +
Sbjct: 100 EEDVNQIFTDEFDLEVIGEGNHIGLGNLDANRFEIAIRDLGLPIEDTRNRTLEIIDQLDG 159
Query: 145 GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAV-KMILDPREGERNEISKAREYYKETD 203
F NYFG QRFGS TH VG +LRGE++ AV I P + E I K RE E+
Sbjct: 160 KFPNYFGDQRFGSARPITHQVGRHILRGEFEEAVWTYIAKPYDSEYKSIRKTRENLWESR 219
Query: 204 DIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAAS 262
D + K P E+ +L L K +Y ALK +P L+ +++H+YQS+++N S
Sbjct: 220 DPEDAAEKFPESYRYEKTLLYHLNKNEEDYKGALKRLPEGLQELFIHAYQSWIFNRVLS 278
>gi|288932434|ref|YP_003436494.1| tRNA pseudouridine synthase D TruD [Ferroglobus placidus DSM 10642]
gi|288894682|gb|ADC66219.1| tRNA pseudouridine synthase D TruD [Ferroglobus placidus DSM 10642]
Length = 424
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 85/254 (33%), Positives = 147/254 (57%), Gaps = 13/254 (5%)
Query: 22 ENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVF- 80
E + E+ GK L + K+N +T ++S +LGI + G++GTKDK +VS Q ++
Sbjct: 38 EKFEEKEGKNLLIKVRKKNWETLNFARVLSNVLGISQKRVGYSGTKDKNAVSVQYFMIYN 97
Query: 81 --KQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSE--DVIKA 136
++ A KL ++ +L + C+ + L LG L+GN F + V D+E + ++
Sbjct: 98 ADERIAEKLKSV--KLKDAEIEVVCFTSKNLELGDLIGNFFRVR----VSDAENGERVEK 151
Query: 137 SANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM-ILDPREGERNEISKA 195
L G N+FG+QRFGS + TH VG +++ +++ A + + P EGER E+ +
Sbjct: 152 ITEELKEKGIPNFFGIQRFGSLRLITHEVGKLIIQRKYEDAFWVYVAKPFEGEREEVRRI 211
Query: 196 REYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSF 255
RE D LR+LP++L ER +LQ L++ L+AL ++P+ L++M++H+YQS+
Sbjct: 212 REILWNERDAKFGLRELPKYLRYERLLLQKLREGKSE-LEALLSLPKNLKLMFIHAYQSY 270
Query: 256 LWNHAASARVQKHG 269
L+N S R++++G
Sbjct: 271 LFNRLLSERIREYG 284
>gi|48477577|ref|YP_023283.1| tRNA pseudouridine synthase D [Picrophilus torridus DSM 9790]
gi|62901315|sp|Q6L1R2.1|TRUD_PICTO RecName: Full=Probable tRNA pseudouridine synthase D; AltName:
Full=tRNA pseudouridine(13) synthase; AltName: Full=tRNA
pseudouridylate synthase D; AltName: Full=tRNA-uridine
isomerase D
gi|48430225|gb|AAT43090.1| conserved hypothetical protein [Picrophilus torridus DSM 9790]
Length = 414
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 120/426 (28%), Positives = 200/426 (46%), Gaps = 64/426 (15%)
Query: 15 PFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVST 74
PFD + +N GK+L + DT + +++ + I + +AGTKDKR+V+T
Sbjct: 42 PFDIKKDDN-----GKYLIIKARLYDWDTNRFVMYLARHMNISRKRITYAGTKDKRAVTT 96
Query: 75 QRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSE-DV 133
Q + R ++N GI + + + + LG L GNRF I VD D+
Sbjct: 97 QYFCINTDRMFS-GSIN----GIEIIEQFRSNDIIKLGDLYGNRFLIK-----VDYPGDL 146
Query: 134 IKASANSLG----RNGFINYFGLQRFGSGSVPTHLVGATLLRGEW-KSAVKMILDPREGE 188
K S+ +L + GF N+FG+QRFGS TH +G +++GE+ K+A K + D +
Sbjct: 147 EKDSSETLKEINEKGGFPNFFGVQRFGSMRSNTHYIGKMIIKGEYEKAADKYLYD----D 202
Query: 189 RNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMY 248
+ + R Y + D +L++ P +L ER+IL + GN A A+P+ L +M+
Sbjct: 203 NFDTEEYRINYGKNMDAKNSLKEYPGNLTFERSILGAI--ASGNKSSAFNALPKNLSIMF 260
Query: 249 VHSYQSFLWNHAASARVQKH--GTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDAD 306
VH++QS+L+N S R+ KH + V+ GDL++ D NP
Sbjct: 261 VHAFQSYLFNKMLSERM-KHVKDLKTVIEGDLLYNIDD-------YFNP----------- 301
Query: 307 DSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYH 366
D L E R+NL + ++ + V+PLPG P ++
Sbjct: 302 DKKRLIEA-------NRYNLEMLNNLSSMDKIR-----PVIPLPGFDTRMPDGLQRDIML 349
Query: 367 HLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEW---ELLTYIDGNKPLAETD 423
+ E + ++L + E+S S +G+YR + KP++ ++ L +I G A +
Sbjct: 350 KVLEDENVSL-QDFKIPGEYSYMSSSGDYRIISAKPINLKFPEKNKLDFILGRGIYATSF 408
Query: 424 LDKIAK 429
L +I K
Sbjct: 409 LREIIK 414
>gi|375082494|ref|ZP_09729551.1| tRNA pseudouridine synthase D [Thermococcus litoralis DSM 5473]
gi|374742833|gb|EHR79214.1| tRNA pseudouridine synthase D [Thermococcus litoralis DSM 5473]
Length = 421
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/243 (34%), Positives = 131/243 (53%), Gaps = 11/243 (4%)
Query: 30 KFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAA 89
K L + L K N +T A+ I+K +GI + GFAGTKD+ +V+ Q +++ + + ++
Sbjct: 45 KCLIYLLKKRNWETMAAIKEIAKRVGIDYKQIGFAGTKDRHAVTYQYISICTENSEEI-- 102
Query: 90 LNKRLIGIRLGD----FCYVKEGLLLGQLLGNRFTITLRGVVVDS--EDVIKASANSLGR 143
KRL + + D F + L LG LLGN F IT+R V D+ E + A +
Sbjct: 103 -KKRLDSLEISDISLEFAGYGKRLKLGMLLGNYFQITVRDVNPDTALERTKEILAELKVK 161
Query: 144 NGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETD 203
GF NYFG QRFG V H VG LL+G ++ A L G+ +AR + ++
Sbjct: 162 GGFPNYFGYQRFGEKRVINHEVGKLLLKGNFEEAAFKFLGEYTGDMMG-DEARRNFLKSG 220
Query: 204 DIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASA 263
D++ L + P L ERA+L K+ ++ +A +PR + +++HSYQS+L+N S
Sbjct: 221 DVEKALEEFPNFLRYERAMLYKYKETK-SWKKAFAVLPRPIVRIFIHSYQSYLFNKVLSR 279
Query: 264 RVQ 266
R++
Sbjct: 280 RIE 282
>gi|325968183|ref|YP_004244375.1| tRNA pseudouridine synthase D TruD [Vulcanisaeta moutnovskia
768-28]
gi|323707386|gb|ADY00873.1| tRNA pseudouridine synthase D TruD [Vulcanisaeta moutnovskia
768-28]
Length = 449
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 124/244 (50%), Gaps = 9/244 (3%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G ++ + K D ++S+ LG+ PR F G KD +V++Q V+V + +
Sbjct: 65 GPWVWMIIEKRGIDAITLSLILSRKLGVSPRDISFGGFKDAVAVTSQIVSVRGISINDVP 124
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ R I++ + + G + GN FTI +R + + D I N L G
Sbjct: 125 SDFGR--DIKVLSAVGMDRAFITGNIWGNEFTIRVRNIDISKRDSINCVVNQLMERGLPT 182
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILD---PREGERNEISKAREYYKETDDI 205
Y+G QRFG +H++G ++ GE++SAV +L P E R I + RE+ T D
Sbjct: 183 YYGYQRFGLKRPNSHVIGRHIILGEFESAVSELLAHAYPMEPPR--IREIREFIARTGDY 240
Query: 206 DGTLRKLPR--HLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASA 263
L +PR ERA+L+ L P +++ AL+ +PR L ++YV SYQS+L+N A S
Sbjct: 241 SKALELMPRGYRYYPERAVLRQLSSNPRDFVNALRKLPRELLILYVESYQSYLFNLALSE 300
Query: 264 RVQK 267
R+ +
Sbjct: 301 RIGR 304
>gi|257053726|ref|YP_003131559.1| tRNA pseudouridine synthase D [Halorhabdus utahensis DSM 12940]
gi|256692489|gb|ACV12826.1| tRNA pseudouridine synthase D TruD [Halorhabdus utahensis DSM
12940]
Length = 452
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/270 (32%), Positives = 136/270 (50%), Gaps = 24/270 (8%)
Query: 42 DTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGD 101
DT + ++S LGI +AGTKDK + +TQ +V K + L ++ L + +
Sbjct: 67 DTNDFASVLSDHLGISRERVSWAGTKDKYAETTQLFSVAKVDPADLETID--LSNVEIEV 124
Query: 102 FCYVKEGLLLGQLLGNRFTI---------TLRGVVVDSEDVIKASANSLG------RNGF 146
+L G L GN F I L GV+ D SA+ G R G
Sbjct: 125 LGRSGRPILFGDLAGNAFEIEISEPDAPGNLDGVL-DELAAFAGSASGGGEDDGSIRIGV 183
Query: 147 INYFGLQRFGSGSVPTHLVGATLLRGEWKSAV-KMILDPREGERNEISKAREYYKETDDI 205
NYFG QRFGS TH VG + RG W AV + +P + ER + KAR+Y ET+D
Sbjct: 184 PNYFGQQRFGSQRPVTHEVGLAVARGGWTDAVLAYVGNPHDREREDTRKARKYVTETEDW 243
Query: 206 DGTLRKLPRHLVAERAILQCLKKC----PGNYLQALKAIPRTLRMMYVHSYQSFLWNHAA 261
+G L +LP+ L ER++ L + P ++ +AL+A+P L+ ++V++ QS+ +N
Sbjct: 244 EGALDRLPKRLGYERSMCHRLVENGADDPEDFQEALEAVPTNLQQLFVNAAQSYAFNRIL 303
Query: 262 SARVQKH-GTEHVVVGDLVFCKGDDTEKEL 290
SAR+++ + V GD+V D +E+
Sbjct: 304 SARLERGLPFDEPVAGDVVCFADSDAPEEI 333
>gi|7020619|dbj|BAA91203.1| unnamed protein product [Homo sapiens]
Length = 205
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 123/301 (40%), Gaps = 103/301 (34%)
Query: 232 NYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELG 291
N + A IPR R+MY+HSYQS++WN+ S R++ +G + V GDLV T E
Sbjct: 3 NIVSAFGIIPRNNRLMYIHSYQSYVWNNMVSKRIEDYGLKPVP-GDLVLKGATATYIEED 61
Query: 292 CVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPG 351
VN Y+I DVV+PLPG
Sbjct: 62 DVN--------------------------------------------NYSIHDVVMPLPG 77
Query: 352 SRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLT 411
VIYP + + E Y + D +++ H ++++ S++G YR++ +P + WE++
Sbjct: 78 FDVIYPKHKIQEAYREMLTADNLDIDNMRHKIRDY---SLSGAYRKIIIRPQNVSWEVVA 134
Query: 412 YIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENN 471
Y D PL TD+D +
Sbjct: 135 YDDPKIPLFNTDVDNL-------------------------------------------- 150
Query: 472 EAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTL 531
E K P V + S+GK ALK+ +LP S YATMAIRE+LK TS+ L
Sbjct: 151 ------EGKTPPVFA-----SEGKYRALKMDFSLPPSTYATMAIREVLKMDTSIKNQTQL 199
Query: 532 N 532
N
Sbjct: 200 N 200
>gi|16081363|ref|NP_393692.1| tRNA pseudouridine synthase D [Thermoplasma acidophilum DSM 1728]
gi|37089820|sp|Q9HLL3.1|TRUD_THEAC RecName: Full=Probable tRNA pseudouridine synthase D; AltName:
Full=tRNA pseudouridine(13) synthase; AltName: Full=tRNA
pseudouridylate synthase D; AltName: Full=tRNA-uridine
isomerase D
gi|10639358|emb|CAC11360.1| conserved hypothetical protein [Thermoplasma acidophilum]
Length = 411
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 84/246 (34%), Positives = 118/246 (47%), Gaps = 24/246 (9%)
Query: 42 DTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGD 101
DT + I+ L I + +AGTKDKR+ Q + + A G R+ D
Sbjct: 53 DTNRIVEEIASALRISRKRISYAGTKDKRARKIQYFCINAPVDVSVLAFK----GFRIID 108
Query: 102 FCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGR-NGFINYFGLQRFGSGSV 160
L LG L N F I +G S+D I+ + GF NYFG QRFGS
Sbjct: 109 RFRSDHYLRLGDLTANHFRIRFQGA---SDDYIEQRYEKMMECGGFPNYFGQQRFGSRRR 165
Query: 161 PTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAER 220
TH VG ++ G ++ AV++ L ER +I R + ET D + L K PR L ER
Sbjct: 166 NTHDVGRLIVTGRYEDAVRLYL---YDERYDIEDYRREFIETLDYNRALEKFPRTLRFER 222
Query: 221 AILQCLKKCPGNYLQ------ALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVV 274
+I+ G Y Q A A+P+ L +M+VH+YQS+L+N S R++K+G +
Sbjct: 223 SII-------GYYAQHHTFKGAFDALPKNLSIMFVHAYQSYLFNRMLSLRIEKYGLNRAI 275
Query: 275 VGDLVF 280
GD F
Sbjct: 276 PGDTAF 281
>gi|358331782|dbj|GAA50543.1| multisubstrate pseudouridine synthase 7 [Clonorchis sinensis]
Length = 344
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 102/355 (28%), Positives = 153/355 (43%), Gaps = 83/355 (23%)
Query: 169 LLRGEWKSAVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKK 228
LLRGEW A+ +IL P ++ ++ L ++ L ER LK
Sbjct: 66 LLRGEWTHAIDLILIPTFAGLGNLAISQP---------ACLLRVAWQLGTER-----LKN 111
Query: 229 -CPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTE 287
P ++L +PR LR +YVHSYQS +WN AS RV + H GDL D+
Sbjct: 112 DGPMSFLN----LPRNLRQLYVHSYQSLIWNRIASRRVNQSHAGHAQPGDLYIQNAADSL 167
Query: 288 KELGCVNPEFEYE-SSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVV 346
++ V+ E +SN + +++ V ++ A+ N + DVV
Sbjct: 168 PQIDAVDEALCLELNSNTSSNAT---------------TPVPSIVTAE-NYQDIPLTDVV 211
Query: 347 LPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFE 406
LPLPG V YP N Y L ++DGI + H VK+F ++ G+YR + KP D
Sbjct: 212 LPLPGFAVSYPQNQCGRWYEELMKEDGICQQDLRHRVKDF---ALPGSYRALVVKPTDVN 268
Query: 407 WELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKL 466
+ + Y+D N PL ++DL ++ + Q+ + S +I
Sbjct: 269 FRIEEYLDPNVPLVKSDLQRLVEV-------------------------QNNTDSSNIP- 302
Query: 467 STENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKT 521
E + + P+ AL L TLP S YAT+AIREL K+
Sbjct: 303 -----EDSSLESTAHPY-------------RALILEFTLPKSSYATIAIRELTKS 339
>gi|333986329|ref|YP_004518936.1| tRNA pseudouridine synthase D [Methanobacterium sp. SWAN-1]
gi|333824473|gb|AEG17135.1| tRNA pseudouridine synthase D [Methanobacterium sp. SWAN-1]
Length = 417
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 98/299 (32%), Positives = 152/299 (50%), Gaps = 30/299 (10%)
Query: 22 ENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFK 81
EN P G + K ++T + + I+K + I + GFAG KDK +V+ Q + V
Sbjct: 32 ENLPSGTGPNTWIFIEKIGRNTLDVVLDIAKEMHINRKRTGFAGMKDKAAVTRQWLCVSN 91
Query: 82 QRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSL 141
+L L ++L +++ ++ L +GQL+GN+F I +R DSED K A +
Sbjct: 92 IEPEELPDLEEKLYNVKVLKIMKNEKKLRIGQLVGNKFRILIR----DSEDP-KQDAETA 146
Query: 142 GR-------NGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAV-KMILDPREGERNEIS 193
GR NG NY+G QRFG TH VG L+ + K AV I +P E E++ I
Sbjct: 147 GRILDQLVQNGVPNYYGWQRFGKNRPNTHKVGEALVHNDIKGAVDSYIGNPYEKEKDHIK 206
Query: 194 KAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGN--------YLQALKAIPRTLR 245
+AR Y + + + + +P + E+ +L+ L K Y +L+++P+ L+
Sbjct: 207 EARALY-DIGEFEEAYQSMPSGMRYEKMMLRELMKQQRKRGKLDEEAYKISLESLPKPLK 265
Query: 246 MMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSND 304
M+VH+YQS+L+N A S R K G + V GD+V D E+ L EFE E N+
Sbjct: 266 RMFVHAYQSYLFNKAVSERT-KMGIDRYVEGDIVI----DNEEHL---IHEFEEEDINE 316
>gi|448737342|ref|ZP_21719383.1| tRNA pseudouridine synthase D [Halococcus thailandensis JCM 13552]
gi|445803802|gb|EMA54078.1| tRNA pseudouridine synthase D [Halococcus thailandensis JCM 13552]
Length = 460
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 93/281 (33%), Positives = 136/281 (48%), Gaps = 32/281 (11%)
Query: 32 LRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALN 91
L F EN DT + + +S L + +AGTKDKR+VSTQ +F RA A +
Sbjct: 57 LVFRATLENWDTNDFVSALSSQLEMSRERIDWAGTKDKRAVSTQ---LFSVRAGSDALDD 113
Query: 92 KRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDS-----EDVIKASAN------- 139
L G + GL G L GN F I +R DS E ++ + N
Sbjct: 114 IDLRGATIDPIGRAGRGLRFGDLAGNAFEIVVREADTDSIERITESLLAFAGNEDENADG 173
Query: 140 SLGRNGFI----NYFGLQRFGSGSVPTHLVGATLLRGEWKSAV-KMILDPREGERNEISK 194
+ GR+G + NYFG QRFGS TH VG ++RG+W+ AV + P E E + +
Sbjct: 174 ASGRDGTMVGVPNYFGQQRFGSYRPVTHEVGLAVVRGDWREAVLAYVGQPHESEPDATRE 233
Query: 195 AREYYKETDDIDGT------LRKLPRHLVAERAILQCLKKCPG----NYLQALKAIPRTL 244
AR + D GT L + PR L ER++L L + G ++ AL+ +P L
Sbjct: 234 ARAFVDREADAAGTADWVTALERYPRQLGFERSMLHRLVENGGERSDDFRAALETVPSNL 293
Query: 245 RMMYVHSYQSFLWNHAASARVQKH-GTEHVVVGDLVFCKGD 284
+ ++V++ QS+L+N S R+ + + V GD+V C D
Sbjct: 294 QRLFVNAAQSYLFNRILSVRLDRGLPFDRAVAGDVV-CFAD 333
>gi|333910728|ref|YP_004484461.1| tRNA pseudouridine synthase D [Methanotorris igneus Kol 5]
gi|333751317|gb|AEF96396.1| tRNA pseudouridine synthase D [Methanotorris igneus Kol 5]
Length = 434
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 86/256 (33%), Positives = 136/256 (53%), Gaps = 13/256 (5%)
Query: 19 RGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVT 78
+ ENW G F+ F L K+N +T +A+ I+K ++FGFAGTKDK +++TQRV
Sbjct: 86 KDEENWN---GSFIHFTLEKKNWNTLDAIREIAKQTKSKRKNFGFAGTKDKFAITTQRVG 142
Query: 79 VFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASA 138
F L +N + I L DF + L +G L GNRFTI +R V VD ++
Sbjct: 143 CFGVSIEDLKKVN--IPNITLRDFQKTNKKLKIGCLWGNRFTIKVRDVEVDKSELDNILK 200
Query: 139 NSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILD---PREGERNEISKA 195
+NYFG+QRFGS TH+VG +++ +++SA P +GE+++ +A
Sbjct: 201 ELSKLKYVLNYFGIQRFGSVRPITHVVGKFIVQRDFESAFYAYCGTPLPYDGEKSK--EA 258
Query: 196 REYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSF 255
R E L+ PR E+ +++ K +Y ++ +P L+ M+V++YQS+
Sbjct: 259 RSLVDE-GKFKEALKIYPRIFYYEKRMIKYYLKHR-DYKKSFNVLPPQLKSMFVNAYQSY 316
Query: 256 LWNHAASARVQKHGTE 271
L+N + R K+G E
Sbjct: 317 LFNEMINERY-KYGFE 331
>gi|242398429|ref|YP_002993853.1| Probable tRNA pseudouridine synthase D [Thermococcus sibiricus MM
739]
gi|259550605|sp|C6A1K9.1|TRUD_THESM RecName: Full=Probable tRNA pseudouridine synthase D; AltName:
Full=tRNA pseudouridine(13) synthase; AltName: Full=tRNA
pseudouridylate synthase D; AltName: Full=tRNA-uridine
isomerase D
gi|242264822|gb|ACS89504.1| Probable tRNA pseudouridine synthase D [Thermococcus sibiricus MM
739]
Length = 422
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 85/257 (33%), Positives = 141/257 (54%), Gaps = 15/257 (5%)
Query: 32 LRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTV----FKQRASKL 87
L + + K+N +T A+ I+K +GI ++ GFAGTKD+ +++ Q +++ + +
Sbjct: 47 LIYLIKKQNWETMAAIKEIAKRIGIDYKNVGFAGTKDRHAITYQYISICSENLESIKESI 106
Query: 88 AALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGR---- 143
A+LN + GI L F + L LG L+GN F I LRG+ D E ++ + L
Sbjct: 107 ASLN--IEGISL-KFVGRGKPLKLGMLIGNHFQIILRGLE-DPERALERTKKILKELKLK 162
Query: 144 NGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETD 203
GF NYFG QRFG V H VG LL+G+++ A L G+ +AR+ + +T
Sbjct: 163 GGFPNYFGSQRFGERRVINHEVGKLLLKGDFEGAALKFLGEYTGDMTG-DEARKDFLKTG 221
Query: 204 DIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASA 263
D++ L + P L ERA+L ++ ++ +A +PR + +++HSYQS+L+N A S
Sbjct: 222 DVEKALEEFPNFLRYERAMLYKYRETR-SWKKAFAVLPRPIVRIFIHSYQSYLFNKALSR 280
Query: 264 RVQKH-GTEHVVVGDLV 279
R+++ + GD+V
Sbjct: 281 RIEEGLSLNEALSGDIV 297
>gi|386002606|ref|YP_005920905.1| tRNA pseudouridine synthase D [Methanosaeta harundinacea 6Ac]
gi|357210662|gb|AET65282.1| tRNA pseudouridine synthase D [Methanosaeta harundinacea 6Ac]
Length = 425
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 89/277 (32%), Positives = 138/277 (49%), Gaps = 21/277 (7%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G++L + K +T + +S+ L I + F +AGTKDK +V+ QR++++ +L
Sbjct: 48 GRYLVVEVEKAGWETHHLVRDLSRQLQISQKRFSWAGTKDKNAVTRQRMSIYGLEEGELV 107
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSE------DVIKASANSLG 142
N L G+R+ + LG L GNRF + +R + +D + + +LG
Sbjct: 108 RAN--LPGVRIRALGRSDRPVSLGDLRGNRFAVRIREIDLDDAEAARRLEAVTGEIRALG 165
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILD-PREGERNEISKAREYYKE 201
G NYFG+QRFG THLVG L+RG+ + A + L P GE ARE
Sbjct: 166 --GLPNYFGVQRFGEVRPVTHLVGEALVRGDPEGAAMIYLALPFPGEPESTRAARERLLA 223
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAA 261
D L++ P L ERA++ L++ G++ ++ + LR ++VH+YQS L+N
Sbjct: 224 DRDFSLALKEYPLRLRYERAMMARLQE-EGDFARSFDVLAENLRRLFVHAYQSLLYNRIL 282
Query: 262 SARVQKHGTE--HVVVGDLVFCKGDDTEKELGCVNPE 296
S R+ K G V GD+V C D G NP+
Sbjct: 283 SRRM-KSGLPLGRAVEGDVV-CFSKD-----GLPNPD 312
>gi|389582824|dbj|GAB65561.1| hypothetical protein PCYB_062930 [Plasmodium cynomolgi strain B]
Length = 990
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 122/454 (26%), Positives = 203/454 (44%), Gaps = 64/454 (14%)
Query: 97 IRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFG 156
+ + + Y K+ L LG L GN F + +RGV SE+ A A++ + GF+NYFG QRFG
Sbjct: 572 VYVSNLSYKKKKLSLGDLQGNFFKVLIRGVEDTSEEKFCALADNFRKAGFVNYFGHQRFG 631
Query: 157 SGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDDIDG--------- 207
S + + +G +L+ +K A+ +++ + ++ + EY E D +
Sbjct: 632 SKQIKNYEIGICILKKNYKQALFHVIENAGLDSSKKGRLIEYLNELDATNRVEGEEEVVV 691
Query: 208 -TLRKLPRHL------VAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
T H+ ++ + C K + A +P+ + +++HS QS ++N
Sbjct: 692 LTTPNDESHVWKDEKDEKDKKTILCSLKNDKKFKNAFMNLPKDIFSLFIHSTQSLIFNIL 751
Query: 261 ASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHP 320
A R++K+G VVVGDL+ ++ E S+D H DE E+ P
Sbjct: 752 ADVRMKKYGFA-VVVGDLIESSRNNEEA------------LSSDNFTEHHSDE-SESGEP 797
Query: 321 DGRHNLVKTVTAADINSGKYTIDDVVLPLPGSR-VIYPMNDVAEVYHHLAEKDGINLTES 379
N++ VT +I+ Y I DVVLP PG + ++P N E L+ NL S
Sbjct: 798 LYETNII-VVTPENISL--YDIYDVVLPFPGDKNFVFPPNLTEEYKSVLS-----NLRLS 849
Query: 380 LHNVK-EFSITSMTGNYRRVFQKPMDFEWELLTYID----GNKPLAETDLDKIAKAKLVN 434
L + + E + S G YR+V KP DF+ L D G P +DL K+
Sbjct: 850 LDDFRSEKNFFSAPGGYRKVVVKPRDFK-SLFIKSDAAGGGRIPFIRSDLTKLV------ 902
Query: 435 IVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQG 494
E+E N E ++ ++SE ++D A + V+S +
Sbjct: 903 ---EQEGWAPNSE---ANSAERSEEPNRDAANPAATTRMADEMQTHITFVQSDVYHEHLI 956
Query: 495 KQM-------ALKLGLTLPSSCYATMAIRELLKT 521
K++ ++ L +LP S Y T+A+ E+L +
Sbjct: 957 KEVPNYRTTASVLLTCSLPKSSYITVALLEVLNS 990
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
+L F+LYKENKD E L I L + G KDKR ++ QR + K + L L
Sbjct: 452 YLHFNLYKENKDICEVLHKIKINLKKKNGDISYCGIKDKRGITVQRFCIHKAKKFDLFRL 511
>gi|389852845|ref|YP_006355079.1| tRNA pseudouridine synthase D [Pyrococcus sp. ST04]
gi|388250151|gb|AFK23004.1| tRNA pseudouridine synthase D [Pyrococcus sp. ST04]
Length = 405
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/248 (33%), Positives = 135/248 (54%), Gaps = 10/248 (4%)
Query: 34 FHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKR 93
+ L K N +T A+ I+K LGI GFAGTKD+ +++ Q +++ + L LN +
Sbjct: 43 YLLKKRNWETMAAIKEIAKRLGIHYSKIGFAGTKDRHAITYQYISICGEYRGILENLNIQ 102
Query: 94 LIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDS-EDVIKASANSLGRNGFINYFGL 152
I IR F L LG LLGN F I +R + ++IK + + GF NYFG+
Sbjct: 103 DIDIR---FIGYGRPLKLGLLLGNWFLIRVRDANPSTLPELIKEAKE---KGGFPNYFGI 156
Query: 153 QRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDDIDGTLRKL 212
QRFG H+VG LL+ +++ A ++ L G+ E +AR + ET +++ L +
Sbjct: 157 QRFGERRAVNHIVGKLLLQRKYEEAAEVFLG-YPGDGMEGDEARRNFLETKNVEKALEEF 215
Query: 213 PRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKH-GTE 271
P+ L ERA+L K+ ++ +A +PR + +++HS+QS+L+N S R+++
Sbjct: 216 PKFLRYERAMLYRYKETK-SWKKAFLVLPRPILRIFIHSFQSYLFNLYLSRRIEEGLPLN 274
Query: 272 HVVVGDLV 279
V GD+V
Sbjct: 275 EAVPGDIV 282
>gi|433638152|ref|YP_007283912.1| tRNA pseudouridine synthase, TruD family [Halovivax ruber XH-70]
gi|433289956|gb|AGB15779.1| tRNA pseudouridine synthase, TruD family [Halovivax ruber XH-70]
Length = 456
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 96/316 (30%), Positives = 147/316 (46%), Gaps = 37/316 (11%)
Query: 6 KKRKERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAG 65
++R++ P D+ + +PE L + DT + +S +GI +AG
Sbjct: 37 REREQFATEPVDA-SPDAYPE-----LVVRVTLTGWDTNDFAAALSDSVGISRERVSWAG 90
Query: 66 TKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTI---- 121
TKDKR+V+TQ ++ + L L+ I + L G L GN F I
Sbjct: 91 TKDKRAVTTQLFSIRDVEPADLPTLSNADIEV----VGRAGRSLTFGDLAGNEFEIVVSD 146
Query: 122 --------TLRGVVVD--SEDVIKASANSLGRN----GFINYFGLQRFGSGSVPTHLVGA 167
++R +VD A A+S+ + G N+FG QRFGS TH VG
Sbjct: 147 PDDPTAANSVRDALVDFGGAQSTPADADSVPSDSTTVGVPNFFGQQRFGSYRPITHEVGL 206
Query: 168 TLLRGEWKSAVKMIL-DPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCL 226
+LRG+W+ AV L +P E E +ARE+ ET D D L + P HL ER++L L
Sbjct: 207 AILRGDWEGAVMAYLGNPHEAEPASTREAREFLLETRDWDEALDRYPGHLRYERSLLHVL 266
Query: 227 KKCPGN-----YLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKH-GTEHVVVGDLVF 280
+ G+ + +AL P L+ ++VH+ QS+ +N S R+ + + V GD+V
Sbjct: 267 TESDGDPDETTFREALGRFPSNLQRLFVHAAQSYAFNLMLSERLDRGLPFDRPVAGDVVC 326
Query: 281 CKGDDTEKELGCVNPE 296
DT+ G V P+
Sbjct: 327 FT--DTDAPDGLVVPD 340
>gi|374636736|ref|ZP_09708290.1| tRNA pseudouridine synthase D TruD [Methanotorris formicicus
Mc-S-70]
gi|373558028|gb|EHP84395.1| tRNA pseudouridine synthase D TruD [Methanotorris formicicus
Mc-S-70]
Length = 433
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/256 (33%), Positives = 137/256 (53%), Gaps = 20/256 (7%)
Query: 22 ENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFK 81
+NW G F+ F L K+N +T +A+ I+K ++FGFAGTKDK +++TQR+ F
Sbjct: 89 KNWN---GSFIHFTLEKKNWNTLDAIREIAKQTKSKRKNFGFAGTKDKFAITTQRIGCFG 145
Query: 82 QRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDS---EDVIKASA 138
L +N L I L DF + L +G L GNRFTI +R + VD ED++K +
Sbjct: 146 VNVEDLKKVN--LPNITLKDFQKTNKKLKIGCLWGNRFTIKVRDMDVDKSELEDILKELS 203
Query: 139 NSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILD---PREGERNEISKA 195
+NYFG+QRFGS TH+VG +++G+++SA P +G E A
Sbjct: 204 KL---KYVLNYFGIQRFGSVRPITHVVGKFIVQGDFESAFYAYCGTPLPYDGRSKE---A 257
Query: 196 REYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSF 255
R E + L+ P+ E+ +++ K +Y ++ +P L+ M+V++YQS+
Sbjct: 258 RTLVDE-GEFKEALKIYPKIFYYEKKMIRYYLKHR-DYKKSFNVLPPQLKSMFVNAYQSY 315
Query: 256 LWNHAASARVQKHGTE 271
L+N + R ++G E
Sbjct: 316 LFNEMINERY-RYGYE 330
>gi|41472389|gb|AAS07447.1| unknown [Homo sapiens]
Length = 195
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 120/293 (40%), Gaps = 103/293 (35%)
Query: 240 IPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEY 299
IPR R+MY+HSYQS++WN+ S R++ +G + V GDLV T E VN
Sbjct: 1 IPRNNRLMYIHSYQSYVWNNMVSKRIEDYGLKPVP-GDLVLKGATATYIEEDDVN----- 54
Query: 300 ESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMN 359
Y+I DVV+PLPG VIYP +
Sbjct: 55 ---------------------------------------NYSIHDVVMPLPGFDVIYPKH 75
Query: 360 DVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPL 419
+ E Y + D +++ H ++++ S++G YR++ +P + WE++ Y D PL
Sbjct: 76 KIQEAYREMLTADNLDIDNMRHKIRDY---SLSGAYRKIIIRPQNVSWEVVAYDDPKIPL 132
Query: 420 AETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEV 479
TD+D + E
Sbjct: 133 FNTDVDNL--------------------------------------------------EG 142
Query: 480 KQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
K P V + S+GK ALK+ +LP S YATMAIRE+LK TS+ LN
Sbjct: 143 KTPPVFA-----SEGKYRALKMDFSLPPSTYATMAIREVLKMDTSIKNQTQLN 190
>gi|410720796|ref|ZP_11360147.1| tRNA pseudouridine synthase, TruD family [Methanobacterium sp.
Maddingley MBC34]
gi|410600255|gb|EKQ54786.1| tRNA pseudouridine synthase, TruD family [Methanobacterium sp.
Maddingley MBC34]
Length = 417
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/274 (31%), Positives = 142/274 (51%), Gaps = 21/274 (7%)
Query: 22 ENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFK 81
E P G + K + T E + I++ L I + GFAG KDK++V+ Q + +
Sbjct: 32 ETQPSGEGPNTWLWIEKNGRTTLEVVLDIARELKINRKQMGFAGMKDKKAVTRQWICISN 91
Query: 82 QRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASA--- 138
+ +L L +L +++ + ++ L +GQL+GN+F + +R D ED A+
Sbjct: 92 KTPEELQGLEDKLHHVKIINITPNQKKLRMGQLVGNKFRLMVR----DVEDPEAAAQEAE 147
Query: 139 ---NSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAV-KMILDPREGERNEISK 194
+ L G NY+G QRFG THLVG L++G K AV + I P + E I +
Sbjct: 148 EILSELKERGVPNYYGYQRFGKDRPNTHLVGKALIKGGVKEAVDRYIGHPFDTEPKHIQE 207
Query: 195 AREYYKETDDIDGTLRKLPRHLVAERAILQCLKK--------CPGNYLQALKAIPRTLRM 246
AR +Y + +++ +L +P + E+ +L+ L K +Y+ AL++IP+ L
Sbjct: 208 ARRFY-DEGELEESLESMPSGMRYEKMMLRALIKEMKKRGTLNEKSYILALRSIPKPLSR 266
Query: 247 MYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVF 280
M+VH+YQS+L+N S R K G + V GD++
Sbjct: 267 MFVHAYQSYLFNRVVSERT-KLGIDQYVKGDILI 299
>gi|156356272|ref|XP_001623851.1| predicted protein [Nematostella vectensis]
gi|156210587|gb|EDO31751.1| predicted protein [Nematostella vectensis]
Length = 180
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 105/218 (48%), Gaps = 45/218 (20%)
Query: 197 EYYKETDDIDGTLRKLPRHLVAERAILQCLKK-------CPGNYLQALKAIPRTLRMMYV 249
YY+ET DI GTL ++P ER IL+ L + C QAL ++P + R++Y
Sbjct: 1 RYYEETGDIPGTLARMPPGQTRERLILKALHRHGRDKYGC----TQALLSLPYSARLLYA 56
Query: 250 HSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSS 309
HSY S WNHAASARV+ +G+ V GDLV+ S A +
Sbjct: 57 HSYTSLAWNHAASARVRLYGSTRVAAGDLVY--------------------DSQSASSQT 96
Query: 310 HLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLA 369
+D+ V+ V+ D SGKY++ DVVLPLPG VIYP N +A+ Y
Sbjct: 97 PIDKC-----------AVRVVSEDDAGSGKYSMADVVLPLPGYSVIYPENKIADSYQGTL 145
Query: 370 EKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEW 407
D + + +++ + S+ G YR++ P W
Sbjct: 146 NSDRLRAED--FRLRKLGL-SLPGAYRKLVAFPTGIAW 180
>gi|448412884|ref|ZP_21576775.1| tRNA pseudouridine synthase D [Halosimplex carlsbadense 2-9-1]
gi|445667586|gb|ELZ20227.1| tRNA pseudouridine synthase D [Halosimplex carlsbadense 2-9-1]
Length = 469
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 92/288 (31%), Positives = 130/288 (45%), Gaps = 36/288 (12%)
Query: 42 DTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGD 101
DT + +S LGI +AGTKDK +V+TQ +V K ++ + R I L
Sbjct: 67 DTNDFASELSNRLGISRERVSWAGTKDKHAVTTQLFSVEKGDPEAVSEVEVRDAEIEL-- 124
Query: 102 FCYVKEGLLLGQLLGNRFTITLRGVVVDSED---VIKASANSLGRN-------------- 144
+L G L GN F IT+RGV D+ + + A S
Sbjct: 125 LGRTGRPVLFGDLAGNAFEITVRGVDPDASEHAESVTADLRSFATGADDAESANGDTDDP 184
Query: 145 ---GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAV-KMILDPREGERNEISKAREYYK 200
G NYFG QRFGS TH VG +LRG WK AV + P E E +AR Y
Sbjct: 185 VTVGVPNYFGQQRFGSKRPVTHEVGLEILRGNWKGAVLAYVGSPAEREPESTREARAYVD 244
Query: 201 ETDDIDGTLRKLPRHLVAERAILQCLKKCPG------------NYLQALKAIPRTLRMMY 248
ET+D G L +LP+ L ER++ L + +Y AL+A+P L+ ++
Sbjct: 245 ETEDWAGALDRLPKRLGFERSMCHRLVERQDEREGEDGALDDEDYRAALEAVPSNLQRLF 304
Query: 249 VHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPE 296
V++ QS+ +N S R+++ H V V C D+E G P+
Sbjct: 305 VNAAQSYAFNRMLSERLERGLPFHEPVAGDVVCFA-DSEAPEGVALPD 351
>gi|18977927|ref|NP_579284.1| tRNA pseudouridine synthase D [Pyrococcus furiosus DSM 3638]
gi|397652048|ref|YP_006492629.1| tRNA pseudouridine synthase D [Pyrococcus furiosus COM1]
gi|37089082|sp|Q8U0N1.1|TRUD_PYRFU RecName: Full=Probable tRNA pseudouridine synthase D; AltName:
Full=tRNA pseudouridine(13) synthase; AltName: Full=tRNA
pseudouridylate synthase D; AltName: Full=tRNA-uridine
isomerase D
gi|18893695|gb|AAL81679.1| hypothetical protein PF1555 [Pyrococcus furiosus DSM 3638]
gi|393189639|gb|AFN04337.1| tRNA pseudouridine synthase D [Pyrococcus furiosus COM1]
Length = 407
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 131/237 (55%), Gaps = 17/237 (7%)
Query: 34 FHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKR 93
+ L K+N +T A+ I+K +G+ GFAGTKD+ +V+ Q +++ + +N
Sbjct: 47 YILKKKNWETMAAIKEIAKRVGVHYSEIGFAGTKDRHAVTYQYISICRD-------VNLE 99
Query: 94 LIGIRLGDFCYVKEG--LLLGQLLGNRFTITLRGVVVDSEDVIKASA--NSLGRNGFINY 149
+ IR + +V G L LG LLGN F I +R +S + S + + GF NY
Sbjct: 100 EVKIRDIELKFVGYGRPLKLGFLLGNFFKIRVR----ESNPSLLPSVIEEAKEKGGFPNY 155
Query: 150 FGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDDIDGTL 209
FG+QRFG H+VG LL G+++ A ++ L G+ E +AR + ET D+D L
Sbjct: 156 FGIQRFGEKRSVNHVVGKLLLLGKYEEAAEVFLG-FPGKGMEGDEARRKFLETKDVDLAL 214
Query: 210 RKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQ 266
R+ P L ERA+L K+ G++ +A +PR + +++HS+QS+L+N S R++
Sbjct: 215 REFPNFLRYERAMLYRYKET-GSWKKAFLVLPRPILRIFIHSFQSYLFNLYLSRRIE 270
>gi|448652134|ref|ZP_21681147.1| tRNA pseudouridine synthase D [Haloarcula californiae ATCC 33799]
gi|445769537|gb|EMA20611.1| tRNA pseudouridine synthase D [Haloarcula californiae ATCC 33799]
Length = 460
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 95/292 (32%), Positives = 137/292 (46%), Gaps = 41/292 (14%)
Query: 32 LRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALN 91
L F N +T + +S LGI +AGTKDKR+V+TQ +V A L +
Sbjct: 57 LVFRAELRNWETNDFASKLSDRLGISRERVSWAGTKDKRAVTTQLFSVKGVAAGDLPEIG 116
Query: 92 KRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLR---------GVVVDSEDVIKASAN--- 139
I + +L G L GN F I +R VV D ++A AN
Sbjct: 117 GTDIEV----IGRAGRPILFGDLAGNAFEIVVRDTENTDNAASVVAD----LRAFANGND 168
Query: 140 ---SLGRN------------GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAV-KMILD 183
S GR+ G NYFG QRFGS TH VG + RGEWK AV + +
Sbjct: 169 SMTSEGRSSDATLPDGDTTVGVPNYFGQQRFGSRRPVTHEVGLAIARGEWKDAVLAYVGN 228
Query: 184 PREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKC----PGNYLQALKA 239
P E E +AR Y ET D G L +LP L ER+I L + P ++ +AL+A
Sbjct: 229 PDEREPESTQEARAYVDETHDWAGALDRLPGALGYERSICHRLVENGASEPADFREALEA 288
Query: 240 IPRTLRMMYVHSYQSFLWNHAASARVQKH-GTEHVVVGDLVFCKGDDTEKEL 290
+P L+ ++V++ QS+++N S R+++ + V GD+V + D ++
Sbjct: 289 LPSNLQSLFVNAAQSYVFNRILSERLERGLPFDRPVEGDVVCFRDSDAPEDF 340
>gi|448637191|ref|ZP_21675567.1| tRNA pseudouridine synthase D [Haloarcula sinaiiensis ATCC 33800]
gi|445764738|gb|EMA15882.1| tRNA pseudouridine synthase D [Haloarcula sinaiiensis ATCC 33800]
Length = 460
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 95/292 (32%), Positives = 137/292 (46%), Gaps = 41/292 (14%)
Query: 32 LRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALN 91
L F N +T + +S LGI +AGTKDKR+V+TQ +V A L +
Sbjct: 57 LVFRAELRNWETNDFASKLSDRLGISRERVSWAGTKDKRAVTTQLFSVKGVAAGDLPEIG 116
Query: 92 KRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLR---------GVVVDSEDVIKASAN--- 139
I + +L G L GN F I +R VV D ++A AN
Sbjct: 117 GTDIEV----IGRAGRPILFGDLAGNAFEIVVRDTENTDNAASVVAD----LRAFANGDD 168
Query: 140 ---SLGRN------------GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAV-KMILD 183
S GR+ G NYFG QRFGS TH VG + RGEWK AV + +
Sbjct: 169 SVTSEGRSSDATLPDGDTTVGVPNYFGQQRFGSRRPVTHEVGLAIARGEWKDAVLAYVGN 228
Query: 184 PREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKC----PGNYLQALKA 239
P E E +AR Y ET D G L +LP L ER+I L + P ++ +AL+A
Sbjct: 229 PNEREPESTQEARGYVDETHDWAGALDRLPGALGYERSICHRLVENGASEPADFREALEA 288
Query: 240 IPRTLRMMYVHSYQSFLWNHAASARVQKH-GTEHVVVGDLVFCKGDDTEKEL 290
+P L+ ++V++ QS+++N S R+++ + V GD+V + D ++
Sbjct: 289 LPSNLQSLFVNAAQSYVFNRILSERLERGLPFDRPVEGDVVCFRDSDAPEDF 340
>gi|404497881|ref|YP_006721987.1| tRNA pseudouridine 13 synthase [Geobacter metallireducens GS-15]
gi|418067735|ref|ZP_12705070.1| tRNA pseudouridine synthase D TruD [Geobacter metallireducens RCH3]
gi|91208115|sp|Q39R76.1|TRUD_GEOMG RecName: Full=tRNA pseudouridine synthase D; AltName: Full=tRNA
pseudouridine(13) synthase; AltName: Full=tRNA
pseudouridylate synthase D; AltName: Full=tRNA-uridine
isomerase D
gi|78195481|gb|ABB33248.1| tRNA pseudouridine 13 synthase [Geobacter metallireducens GS-15]
gi|373558334|gb|EHP84683.1| tRNA pseudouridine synthase D TruD [Geobacter metallireducens RCH3]
Length = 404
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 84/251 (33%), Positives = 133/251 (52%), Gaps = 11/251 (4%)
Query: 35 HLY----KENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
H+Y K T +A+ +++ L + R G+AG KD R V+ Q V++ + + ++ AL
Sbjct: 42 HVYALIEKRGVTTLDAIRRLARALKLSERDVGYAGMKDARGVTRQTVSLPRMKPEEVLAL 101
Query: 91 NKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYF 150
L GIR+ + L LG L GNRF I +RGVV D+ +A L R G N F
Sbjct: 102 E--LPGIRILSAERHRNKLKLGHLAGNRFRIRVRGVVSDAVARAEAILAVLERRGVPNRF 159
Query: 151 GLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYYKETDDIDGTL 209
G QR+G+ +HL+G +L G+W +AV +++ DP + A E Y+ +++ +
Sbjct: 160 GEQRYGAQGN-SHLIGRAMLAGDWCAAVDLLMGDPAKVTGEAWRSAIEAYQR-GELEESQ 217
Query: 210 RKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHG 269
R P H ER ++Q L K P ++ A +A+ LR +Y+ + QS L++H AR+
Sbjct: 218 RLFPGHCRTERDVIQRLVKRPDDFEGAFRAVNPRLRKLYLSACQSALFDHVVEARLDSLD 277
Query: 270 TEHVVVGDLVF 280
T V GDL +
Sbjct: 278 T--VQEGDLAW 286
>gi|257076322|ref|ZP_05570683.1| tRNA pseudouridine synthase D [Ferroplasma acidarmanus fer1]
Length = 414
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 137/258 (53%), Gaps = 17/258 (6%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVF---KQRAS 85
GK+ + N DT + L ++ L I + +AGTKDK ++TQ + Q+ +
Sbjct: 44 GKYTILKVRLRNWDTNKFLMYLADQLHISNKRITYAGTKDKIGITTQYFCINMPENQQIN 103
Query: 86 KLAALNKRLIGIRLGDFCYVKEGLL-LGQLLGNRFTITLRGVVVDSEDVIKASANSLGRN 144
++ + +I + + L+ LG LLGN F I+++ +++ + + + +
Sbjct: 104 NISIKDAEIIS------SFRTDKLVKLGDLLGNEFIISIQSTDDNTQKIGETVESIVKNG 157
Query: 145 GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVK-MILDPREGERNEISKAREYYKETD 203
GF N++G QRFGS TH +G L++ +++ AVK I DP E +R + R + ET
Sbjct: 158 GFPNFYGYQRFGSIRANTHKIGKLLVQNKYEDAVKTYIYDP-EFDRED---YRRTFGETG 213
Query: 204 DIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASA 263
D +++ P +L ER++L + + Y A PR L M+++H+YQS+L+N S
Sbjct: 214 DAKRAIKEFPEYLTFERSLLGYIIR-ENTYKNAFSVFPRNLSMLFIHAYQSYLFNRILSD 272
Query: 264 RVQKHGTEHVVV-GDLVF 280
R++ G+ H V+ GDL++
Sbjct: 273 RMKYAGSMHKVLEGDLLY 290
>gi|297618700|ref|YP_003706805.1| tRNA pseudouridine synthase D TruD [Methanococcus voltae A3]
gi|297377677|gb|ADI35832.1| tRNA pseudouridine synthase D TruD [Methanococcus voltae A3]
Length = 469
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 84/258 (32%), Positives = 132/258 (51%), Gaps = 14/258 (5%)
Query: 15 PFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVST 74
P + + E W G FL F + K N +T + + ++++ ++FGFAGTKDK +++T
Sbjct: 98 PEEFKDVERWN---GSFLHFTVEKVNYNTIDVIKDLARLTKTKRKNFGFAGTKDKYALTT 154
Query: 75 QRVTVFKQRASKLAALNKR-LIGIRLGDF-----CYVKEGLLLGQLLGNRFTITLRGVVV 128
QR+ F + L A+ K L+ R G F C + L +G L GNRF+I +R V
Sbjct: 155 QRMGCFGIKPEVLEAVGKNGLVEKRGGQFIIRDVCKSNKKLRMGNLWGNRFSIKIRDVEE 214
Query: 129 DSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGE 188
+ E A +L + INYFG+QRFG THLVG + ++++A + E
Sbjct: 215 EGESY---DAKNLSLDYVINYFGVQRFGLQRPITHLVGKHIYERDFETAFYIYCGTPINE 271
Query: 189 RNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMY 248
+ +ARE E D L+ PR E+ ++Q K +Y +A A LR ++
Sbjct: 272 KGLKKEAREAV-EDGDFKLALKLFPRESEYEKRLIQQYLKYK-DYKKAFYAFAPQLRSLF 329
Query: 249 VHSYQSFLWNHAASARVQ 266
V+SYQS+L+N + R +
Sbjct: 330 VNSYQSYLFNEILNKRYE 347
>gi|300711939|ref|YP_003737753.1| tRNA pseudouridine synthase D [Halalkalicoccus jeotgali B3]
gi|448295629|ref|ZP_21485693.1| tRNA pseudouridine synthase D [Halalkalicoccus jeotgali B3]
gi|299125622|gb|ADJ15961.1| tRNA pseudouridine synthase D [Halalkalicoccus jeotgali B3]
gi|445583728|gb|ELY38057.1| tRNA pseudouridine synthase D [Halalkalicoccus jeotgali B3]
Length = 460
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 91/281 (32%), Positives = 129/281 (45%), Gaps = 32/281 (11%)
Query: 42 DTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGD 101
DT + +S +G +AGTKDKR+V+TQ +V K L + I +
Sbjct: 70 DTNDFARRLSDAMGASRERVSWAGTKDKRAVTTQLFSVMKGEPEALPEVRGADIEV---- 125
Query: 102 FCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG--RNGFINYFGLQRFGSGS 159
L G L GN F I +R ++ D I A+ G R G NYFG QRFGS
Sbjct: 126 VGRAGRDLQFGDLAGNEFRIRVRDADPENCDAITAALREFGGGRVGVPNYFGQQRFGSRR 185
Query: 160 VPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREY------------------YK 200
TH VG + R +W+ AV L +PRE E + AR Y
Sbjct: 186 PVTHRVGLAIAREDWRGAVMEYLGNPRESEPEDTQAARGYVDREARRASKEGEEGSDPLD 245
Query: 201 ETDDIDGTLRKLPRHLVAERAILQCL----KKCPGNYLQALKAIPRTLRMMYVHSYQSFL 256
ET+D DG L + PR L ERA+L L + ++ AL+ P L+ ++V++ QS L
Sbjct: 246 ETEDWDGALERFPRKLGFERAMLHRLVEGGAESEADFRAALETAPTNLQRLFVNAAQSSL 305
Query: 257 WNHAASARVQKH-GTEHVVVGDLVFCKGDDTEKELGCVNPE 296
+N S R+++ + V GD+V C DT+ G P+
Sbjct: 306 FNRILSERLERDLPFDRAVAGDVV-CFA-DTDAPEGLARPD 344
>gi|448681235|ref|ZP_21691368.1| tRNA pseudouridine synthase D [Haloarcula argentinensis DSM 12282]
gi|445767768|gb|EMA18861.1| tRNA pseudouridine synthase D [Haloarcula argentinensis DSM 12282]
Length = 460
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 95/292 (32%), Positives = 137/292 (46%), Gaps = 41/292 (14%)
Query: 32 LRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALN 91
L F N +T + +S LGI +AGTKDKR+V+TQ +V A L +
Sbjct: 57 LVFRAELRNWETNDFASKLSDRLGISRERVSWAGTKDKRAVTTQLFSVKGVAAGDLPEIG 116
Query: 92 KRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLR---------GVVVDSEDVIKASAN--- 139
+ + +L G L GN F I +R VV D ++A AN
Sbjct: 117 GTDVEV----IGRAGRPILFGDLAGNAFEIVVRDTENTDNAASVVAD----LRAFANGDD 168
Query: 140 ---SLGRN------------GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAV-KMILD 183
S GR+ G NYFG QRFGS TH VG + RGEWK AV + +
Sbjct: 169 SVTSEGRSSDATLPDGDTTVGVPNYFGQQRFGSRRPVTHEVGLAIARGEWKDAVLAYVGN 228
Query: 184 PREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKC----PGNYLQALKA 239
P E E +AR Y ET D G L KLP L ER+I L + P ++ +AL+A
Sbjct: 229 PNEREPESTQEARGYVDETHDWAGALDKLPGALGYERSICHRLVENGADEPEDFREALEA 288
Query: 240 IPRTLRMMYVHSYQSFLWNHAASARVQKH-GTEHVVVGDLVFCKGDDTEKEL 290
+P L+ ++V++ QS+++N S R+++ + V GD+V + D ++
Sbjct: 289 LPSNLQSLFVNAAQSYVFNRILSKRLERGLPFDRPVEGDVVCFRDSDAPEDF 340
>gi|56755145|gb|AAW25752.1| SJCHGC00569 protein [Schistosoma japonicum]
Length = 368
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 89/150 (59%), Gaps = 9/150 (6%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
+ F LYKE KDT A+ ++S+ L + P F +AGTKD+R+++TQ VT + L+ L
Sbjct: 172 YCHFVLYKEGKDTLSAIQVLSRFLHVGPNVFSYAGTKDRRAITTQFVTAKSINSKTLSLL 231
Query: 91 NKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYF 150
N RL G+R+G+F YV L LG L GN+F + LR V V++ + N+ GF+NY+
Sbjct: 232 NARLHGLRVGNFSYVSSPLFLGDLDGNQFVVVLRSVCA-PRSVVETAINAWKCTGFVNYY 290
Query: 151 GLQRFGSGS------VPTHLVGATLLRGEW 174
GLQRFG S + +L+ + L G W
Sbjct: 291 GLQRFGHSSKSKSFEIGKYLISS--LSGRW 318
>gi|14591320|ref|NP_143398.1| tRNA pseudouridine synthase D [Pyrococcus horikoshii OT3]
gi|37087890|sp|O59207.1|TRUD_PYRHO RecName: Full=Probable tRNA pseudouridine synthase D; AltName:
Full=tRNA pseudouridine(13) synthase; AltName: Full=tRNA
pseudouridylate synthase D; AltName: Full=tRNA-uridine
isomerase D
gi|3257965|dbj|BAA30648.1| 409aa long hypothetical protein [Pyrococcus horikoshii OT3]
Length = 409
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 135/247 (54%), Gaps = 10/247 (4%)
Query: 34 FHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKR 93
+ L K+N +T A+ I+K +GI GFAGTKD+ +V+ Q +++ ++ + A+
Sbjct: 48 YLLKKKNWETMAAIKEIAKRIGIHYSEIGFAGTKDRHAVTYQYISICREVDLENVAIKD- 106
Query: 94 LIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQ 153
+ +R F L LG LLGN F I +R + I A G GF NYFG+Q
Sbjct: 107 -VTLR---FVGYGRPLKLGLLLGNFFKIRVRDTTPELLPNILKEAKEKG--GFPNYFGIQ 160
Query: 154 RFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDDIDGTLRKLP 213
RFG H+VG LL G+++ A ++ L G E +AR+ + ET ++D L + P
Sbjct: 161 RFGEKRSVNHIVGKLLLLGKYEEAAEVFLG-YPGNGMEGDEARKKFLETKNVDLALEEFP 219
Query: 214 RHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQK-HGTEH 272
+ L ERA+L ++ G++ ++ A+PR + +++H++QS+L+N S R+++
Sbjct: 220 KFLRYERAMLYKYRET-GSWKRSFLALPRPILRIFIHAFQSYLFNLYISRRIEEGFPLNE 278
Query: 273 VVVGDLV 279
+ GD+V
Sbjct: 279 ALPGDIV 285
>gi|14520838|ref|NP_126313.1| tRNA pseudouridine synthase D [Pyrococcus abyssi GE5]
gi|37090003|sp|Q9V107.1|TRUD_PYRAB RecName: Full=Probable tRNA pseudouridine synthase D; AltName:
Full=tRNA pseudouridine(13) synthase; AltName: Full=tRNA
pseudouridylate synthase D; AltName: Full=tRNA-uridine
isomerase D
gi|5458054|emb|CAB49544.1| Hypothetical protein PAB0430 [Pyrococcus abyssi GE5]
gi|380741380|tpe|CCE70014.1| TPA: tRNA pseudouridine synthase D [Pyrococcus abyssi GE5]
Length = 406
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 132/244 (54%), Gaps = 9/244 (3%)
Query: 38 KENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGI 97
K N +T A+ I+K +GI GFAGTKD+ +V+ Q ++V + ++ L R + +
Sbjct: 47 KRNWETIAAIKEIAKRIGIHYSEIGFAGTKDRHAVTYQYISVCRDVRKEVEKLKIRDVEL 106
Query: 98 RLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG-RNGFINYFGLQRFG 156
+ F L LG LLGN F I +R V ++I L + GF NYFG+QRFG
Sbjct: 107 K---FVGYGRPLKLGFLLGNFFLIRVRDV--KRPELIPKIIEELKIKGGFPNYFGIQRFG 161
Query: 157 SGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHL 216
H+VG LL G+++ A ++ L G E +AR+ + ET D+D L + P+ L
Sbjct: 162 EKRSVNHIVGKLLLEGKYEEAAEVFLG-YPGNGMEGDEARKRFLETKDVDLALEEFPKFL 220
Query: 217 VAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKH-GTEHVVV 275
ERA+L ++ ++ +A +PR + +++H++Q++L+N S R+++ +
Sbjct: 221 RYERAMLYRYRET-RSWKKAFLVLPRPILRIFIHAFQAYLFNLYLSRRIEEGLPLNEAIP 279
Query: 276 GDLV 279
GD+V
Sbjct: 280 GDIV 283
>gi|448685110|ref|ZP_21693120.1| tRNA pseudouridine synthase D [Haloarcula japonica DSM 6131]
gi|445782313|gb|EMA33160.1| tRNA pseudouridine synthase D [Haloarcula japonica DSM 6131]
Length = 460
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 94/288 (32%), Positives = 132/288 (45%), Gaps = 33/288 (11%)
Query: 32 LRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALN 91
L F N +T + +S LGI +AGTKDKR+V+TQ +V A L +
Sbjct: 57 LVFRAELRNWETNDFASKLSDRLGISRERVSWAGTKDKRAVTTQLFSVKGVAAEDLPEIG 116
Query: 92 KRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLR---------GVVVD-----SEDVIKAS 137
I + +L G L GN F I +R VV D S D AS
Sbjct: 117 GTDIEV----IGRAGRPILFGDLAGNAFEIVVRDTENTDNAASVVADLQAFASGDTPAAS 172
Query: 138 ANSLGRN---------GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAV-KMILDPREG 187
G G NYFG QRFGS TH VG + RGEW+ AV + +P E
Sbjct: 173 EERAGDATLPDGDTTVGVPNYFGQQRFGSRRPVTHEVGLAIARGEWQDAVLAYVGNPNER 232
Query: 188 ERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKC----PGNYLQALKAIPRT 243
E +AR Y ET D G L KLP L ER+I L + P ++ +AL+A+P
Sbjct: 233 EPESTQEARAYVDETHDWAGALDKLPGALGYERSICHRLVENGADEPEDFREALEALPSN 292
Query: 244 LRMMYVHSYQSFLWNHAASARVQKH-GTEHVVVGDLVFCKGDDTEKEL 290
L+ ++V++ QS+++N S R+ + + V GD+V + D ++
Sbjct: 293 LQSLFVNAAQSYVFNRILSERLDRGLPFDRPVEGDVVCFRDSDAPEDF 340
>gi|325957770|ref|YP_004289236.1| tRNA pseudouridine synthase D [Methanobacterium sp. AL-21]
gi|325329202|gb|ADZ08264.1| tRNA pseudouridine synthase D [Methanobacterium sp. AL-21]
Length = 417
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 87/279 (31%), Positives = 145/279 (51%), Gaps = 28/279 (10%)
Query: 41 KDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLG 100
++T + + I+K L I + GFAG KDK + + Q + V ++ ++ +L + +
Sbjct: 51 RNTLDVVLDIAKELKISRKRMGFAGMKDKTARTRQWLCVSNSSVEEIQSITDKLYNVEVL 110
Query: 101 DFCYVKEGLLLGQLLGNRFTITLRGV------VVDSEDVIKASANSLGRNGFINYFGLQR 154
D ++ L +GQL+GN+F I +R V ++DV+K L G NY+G QR
Sbjct: 111 DIKQNEKKLRIGQLVGNKFKILIRNTDDPENDVETAQDVLK----QLIETGVPNYYGWQR 166
Query: 155 FGSGSVPTHLVGATLLRGEWKSAV-KMILDPREGERNEISKAREYYKETDDIDGTLRKLP 213
FG TH+VG L+ + K AV I +P ER I +AR Y E ++ + +P
Sbjct: 167 FGKERSNTHVVGEYLVHNDVKGAVDAYIGNPYPKEREHIKEARSLYDE-GKLEEAYQTMP 225
Query: 214 RHLVAERAILQ---CLKKCPG-----NYLQALKAIPRTLRMMYVHSYQSFLWNHAASARV 265
+ E+ +L+ L++ G +Y+ A++++P+ L+ M+VH+YQS+L+N A S R
Sbjct: 226 GSMRYEKMLLRELLNLQRRKGELTEKSYIIAIESLPKPLKRMFVHAYQSYLFNKAVSERA 285
Query: 266 QKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSND 304
K G V GD++ D E+ L EF+ E+ D
Sbjct: 286 -KLGLNKYVEGDILI----DNEEHLVH---EFDVETVED 316
>gi|344212546|ref|YP_004796866.1| tRNA pseudouridine synthase D [Haloarcula hispanica ATCC 33960]
gi|343783901|gb|AEM57878.1| tRNA pseudouridine synthase D [Haloarcula hispanica ATCC 33960]
Length = 460
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 92/284 (32%), Positives = 134/284 (47%), Gaps = 33/284 (11%)
Query: 32 LRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALN 91
L F N +T + +S LGI +AGTKDKR+V+TQ +V A L +
Sbjct: 57 LVFRAELRNWETNDFASKLSDRLGISRERVSWAGTKDKRAVTTQLFSVKGVAAEDLPEIG 116
Query: 92 KRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLR---------GVVVD----------SED 132
I + +L G L GN F I +R VV D + D
Sbjct: 117 GTDIEV----IGRAGRPILFGDLAGNAFEIVVRDTENTDNAASVVADLQAFASGEDPTGD 172
Query: 133 VIKASANSLGRN----GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAV-KMILDPREG 187
++S +L G NYFG QRFGS TH VG + RGEWK+AV + +P E
Sbjct: 173 RARSSDATLPDGDTTVGVPNYFGQQRFGSRRPVTHEVGLAIARGEWKNAVLAYVGNPDER 232
Query: 188 ERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKC----PGNYLQALKAIPRT 243
E +AR Y ET D G L +LP L ER+I L + P ++ +AL+A+P
Sbjct: 233 EPESTQEARAYVDETHDWAGALDRLPGALGYERSICHRLVENGASEPADFREALEALPSN 292
Query: 244 LRMMYVHSYQSFLWNHAASARVQKH-GTEHVVVGDLVFCKGDDT 286
L+ ++V++ QS+++N S R+++ + V GD+V + D
Sbjct: 293 LQSLFVNAAQSYVFNRILSERLERGLPFDRPVEGDIVCFRDSDA 336
>gi|448630983|ref|ZP_21673438.1| tRNA pseudouridine synthase D [Haloarcula vallismortis ATCC 29715]
gi|445755357|gb|EMA06747.1| tRNA pseudouridine synthase D [Haloarcula vallismortis ATCC 29715]
Length = 460
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/288 (30%), Positives = 132/288 (45%), Gaps = 33/288 (11%)
Query: 32 LRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALN 91
L F N +T + +S LGI +AGTKDKR+V+TQ +V A L +
Sbjct: 57 LVFRAELRNWETNDFASKLSDRLGISRERVSWAGTKDKRAVTTQLFSVKGVTAEDLPEIG 116
Query: 92 KRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLR---------GVVVDSEDVIKASANSLG 142
I + +L G L GN F I +R VV D + + G
Sbjct: 117 GTDIEV----IGRAGRPILFGDLAGNAFEIVVRDTENTDSAASVVADLQAFASGGDPTAG 172
Query: 143 RN--------------GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAV-KMILDPREG 187
+ G NYFG QRFGS TH VG + RGEWK AV + +P +
Sbjct: 173 GDRSSDAALPDGDTTVGVPNYFGQQRFGSRRPVTHKVGLAIARGEWKDAVLAYVGNPHDR 232
Query: 188 ERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKC----PGNYLQALKAIPRT 243
E +AR Y ET D G L +LP L ER+I L + P ++ +AL+A+P
Sbjct: 233 EPESTQEARAYVDETHDWAGALDRLPGALGYERSICHRLVENGADEPADFREALEALPSN 292
Query: 244 LRMMYVHSYQSFLWNHAASARVQKH-GTEHVVVGDLVFCKGDDTEKEL 290
L+ ++V++ QS+++N S R+++ + V GD+V + D ++
Sbjct: 293 LQSLFVNAAQSYVFNRILSERLERGLPFDRPVEGDVVCFRDSDAPEDF 340
>gi|55378512|ref|YP_136362.1| tRNA pseudouridine synthase D [Haloarcula marismortui ATCC 43049]
gi|62901223|sp|Q5V1E6.1|TRUD_HALMA RecName: Full=Probable tRNA pseudouridine synthase D; AltName:
Full=tRNA pseudouridine(13) synthase; AltName: Full=tRNA
pseudouridylate synthase D; AltName: Full=tRNA-uridine
isomerase D
gi|55231237|gb|AAV46656.1| unknown [Haloarcula marismortui ATCC 43049]
Length = 460
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 91/288 (31%), Positives = 133/288 (46%), Gaps = 33/288 (11%)
Query: 32 LRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALN 91
L F N +T + +S LGI +AGTKDKR+V+TQ +V A L +
Sbjct: 57 LVFRAELRNWETNDFASKLSDRLGISRERVSWAGTKDKRAVTTQLFSVKGVAAGDLPEIG 116
Query: 92 KRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLR---------GVVVD------SEDVIKA 136
I + +L G L GN F I +R VV D +D + +
Sbjct: 117 GTDIEV----IGRAGRPILFGDLAGNAFEIVVRDTENTDNAASVVADLRAFANGDDSVTS 172
Query: 137 SANSLGRN--------GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAV-KMILDPREG 187
S G NYFG QRFGS TH VG + RGEWK AV + +P E
Sbjct: 173 EGWSSDATLPDGDTTVGVPNYFGQQRFGSRRPVTHEVGLAIARGEWKDAVLAYVGNPNER 232
Query: 188 ERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKC----PGNYLQALKAIPRT 243
E +AR Y ET D G L +LP L ER+I L + P ++ +AL+A+P
Sbjct: 233 EPESTQEARGYVDETHDWAGALDRLPGALGYERSICHRLVENGASEPADFREALEALPSN 292
Query: 244 LRMMYVHSYQSFLWNHAASARVQKH-GTEHVVVGDLVFCKGDDTEKEL 290
L+ ++V++ QS+++N S R+++ + V GD+V + D ++
Sbjct: 293 LQSLFVNAAQSYVFNRILSERLERGLPFDRPVEGDVVCFRDSDAPEDF 340
>gi|148643216|ref|YP_001273729.1| tRNA pseudouridine synthase D, TruD [Methanobrevibacter smithii
ATCC 35061]
gi|148552233|gb|ABQ87361.1| tRNA pseudouridine synthase D, TruD [Methanobrevibacter smithii
ATCC 35061]
Length = 420
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/261 (33%), Positives = 135/261 (51%), Gaps = 19/261 (7%)
Query: 50 ISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIG-IRLGDFCYVKEG 108
I++ L I + GFAG KDK++ + Q + + + + K L G I DF V G
Sbjct: 60 IARDLHISRKRMGFAGMKDKKARTRQWICISNMESEEQFRQVKDLEGTIYKTDFLKVVRG 119
Query: 109 ---LLLGQLLGNRFTITLRGV--VVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTH 163
L +GQL GN+F I +R + + S ++ L G NYFG QRFG TH
Sbjct: 120 RKKLRMGQLKGNKFQILIRDIDDIEKSAEIANNILKELEVTGVPNYFGWQRFGKPRTNTH 179
Query: 164 LVGATLLRGEWKSAV-KMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAE--- 219
LVG L++ + K AV + I +P E E KAR+ Y + +++ +L + + + E
Sbjct: 180 LVGEALVQNDLKEAVRRYIGNPTSEEHEENQKARQAY-DDGNLEESLELMSKGMRYEKMM 238
Query: 220 -RAILQCLKKCPGN---YLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVV 275
R +++ KK P + Y AL A+P+ L+ M+VH+YQS+L+N A S RV G V
Sbjct: 239 VRELIKYAKKGPLDDKAYKNALHALPKPLQRMFVHAYQSYLFNDAVSRRVA-MGINRYVE 297
Query: 276 GDLVFCKGDDTEKELGCVNPE 296
GD++ D+ E+ + PE
Sbjct: 298 GDIII---DNEERIVRDKTPE 315
>gi|222445447|ref|ZP_03607962.1| hypothetical protein METSMIALI_01085 [Methanobrevibacter smithii
DSM 2375]
gi|222435012|gb|EEE42177.1| tRNA pseudouridine synthase D [Methanobrevibacter smithii DSM 2375]
Length = 420
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 88/261 (33%), Positives = 136/261 (52%), Gaps = 19/261 (7%)
Query: 50 ISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIG-IRLGDFCYVKEG 108
I++ L I + GFAG KDK++ + Q + + + + K L G I DF V G
Sbjct: 60 IARDLHISRKRMGFAGMKDKKARTRQWICISNMESEEQFRQVKDLEGTIYKTDFLKVVRG 119
Query: 109 ---LLLGQLLGNRFTITLRGV--VVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTH 163
L +GQL GN+F I +R + + S ++ L G NYFG QRFG TH
Sbjct: 120 RKKLRMGQLKGNKFQILIRDIDDIEKSAEIANNILKELEVTGVPNYFGWQRFGKPRTNTH 179
Query: 164 LVGATLLRGEWKSAV-KMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAI 222
LVG L++ + K AV + I +P E E KAR+ Y + +++ +L + + + E+ +
Sbjct: 180 LVGEALVQNDLKEAVRRYIGNPTSEEHEENQKARQAY-DDGNLEESLELMSKGMRYEKMM 238
Query: 223 LQCL----KKCPGN---YLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVV 275
++ L KK P + Y AL A+P+ L+ M+VH+YQS+L+N A S RV G V
Sbjct: 239 VRELIKDAKKGPLDDKAYKNALHALPKPLQRMFVHAYQSYLFNDAVSRRVA-MGINRYVE 297
Query: 276 GDLVFCKGDDTEKELGCVNPE 296
GD++ D+ E+ + PE
Sbjct: 298 GDIII---DNEERIVRDKTPE 315
>gi|261349992|ref|ZP_05975409.1| tRNA pseudouridine synthase D [Methanobrevibacter smithii DSM 2374]
gi|288860776|gb|EFC93074.1| tRNA pseudouridine synthase D [Methanobrevibacter smithii DSM 2374]
Length = 420
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 84/245 (34%), Positives = 129/245 (52%), Gaps = 16/245 (6%)
Query: 50 ISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIG-IRLGDFCYVKEG 108
I++ L I + GFAG KDK++ + Q + + + + K L G I DF V G
Sbjct: 60 IARDLHISRKRMGFAGMKDKKARTRQWICISNMESEEQFRQVKDLEGTIYKTDFLKVVRG 119
Query: 109 ---LLLGQLLGNRFTITLRGV--VVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTH 163
L +GQL GN+F I +R + + S ++ L G NYFG QRFG TH
Sbjct: 120 RKKLRMGQLKGNKFQILIRDIDDIEKSAEIANNILKELEVTGVPNYFGWQRFGKPRTNTH 179
Query: 164 LVGATLLRGEWKSAV-KMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAI 222
LVG L++ + K AV + I +P E E KAR+ Y + +++ +L + + + E+ +
Sbjct: 180 LVGEALVQNDLKEAVRRYIGNPTSEEHEENQKARQAY-DDGNLEESLELMSKGMRYEKMM 238
Query: 223 LQCL----KKCPGN---YLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVV 275
++ L KK P + Y AL A+P+ L+ M+VH+YQS+L+N A S RV G V
Sbjct: 239 VRELIKDAKKGPLDDKAYKNALHALPKPLQRMFVHAYQSYLFNDAVSRRVA-MGINRYVE 297
Query: 276 GDLVF 280
GD++
Sbjct: 298 GDIII 302
>gi|84489049|ref|YP_447281.1| TruD [Methanosphaera stadtmanae DSM 3091]
gi|84372368|gb|ABC56638.1| TruD [Methanosphaera stadtmanae DSM 3091]
Length = 416
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 143/272 (52%), Gaps = 22/272 (8%)
Query: 20 GSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTV 79
GS W + KE + T + + ++K L I + GFAG KD+ +++ Q + +
Sbjct: 39 GSNTW---------IQIEKEGRTTLDVVLDMAKYLHISRKRTGFAGMKDRSAITRQWLCI 89
Query: 80 FKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGV--VVDSEDVIKAS 137
+L + L +++ D ++ L +GQL GN+F I ++ V+ +D+ +
Sbjct: 90 SNITPEELPDFEEVLHNVKVLDIKQNQKKLRMGQLKGNKFKIHIKNTNNPVEDKDIAEDV 149
Query: 138 ANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAR 196
SL G N++G QRFG THLVG L+ G+ K AV + +P + E N+ +AR
Sbjct: 150 LESLKVTGVPNFYGFQRFGEVRSTTHLVGKCLVEGDIKKAVDTYIGNPNKNEHNQPFEAR 209
Query: 197 EYYKETDDIDGTLRKLPRHLVAERAILQCL---KKCPG-----NYLQALKAIPRTLRMMY 248
+ Y E + + +P+ + E+++L+ L K+ G +Y++A++++P+ L+ M+
Sbjct: 210 QLYDE-GKLQESYDLMPKSMRYEKSMLKELILSKEKHGEITEKDYIRAIESLPKPLKRMF 268
Query: 249 VHSYQSFLWNHAASARVQKHGTEHVVVGDLVF 280
V++Y+S+L+N + R K G + GD++
Sbjct: 269 VNAYESYLFNKVVNER-SKIGINKYLPGDIII 299
>gi|448671277|ref|ZP_21687216.1| tRNA pseudouridine synthase D [Haloarcula amylolytica JCM 13557]
gi|445765880|gb|EMA17017.1| tRNA pseudouridine synthase D [Haloarcula amylolytica JCM 13557]
Length = 460
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 93/288 (32%), Positives = 131/288 (45%), Gaps = 33/288 (11%)
Query: 32 LRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALN 91
L F N +T + +S LGI +AGTKDKR+V+TQ +V A L +
Sbjct: 57 LVFRAELRNWETNDFASKLSDRLGISRERVSWAGTKDKRAVTTQLFSVKGVAAGDLPEIG 116
Query: 92 KRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLR---------GVVVD------------S 130
I + +L G L GN F I +R VV D S
Sbjct: 117 GTDIEV----IGRAGRPILFGDLAGNAFEIVVRDTENTDNAASVVADLRAFASGDDPTAS 172
Query: 131 EDVIKASANSLGRN--GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAV-KMILDPREG 187
ED A G G NYFG QRFGS TH VG + RGEW+ AV + +P E
Sbjct: 173 EDRSSDPALPDGDTTVGVPNYFGQQRFGSRRPVTHEVGLAIARGEWRDAVLAYVGNPNER 232
Query: 188 ERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKC----PGNYLQALKAIPRT 243
E AR Y ET D G L +LP L ER+I L + P ++ AL+A+P
Sbjct: 233 EPESTQAARAYVDETHDWAGALDELPGALGYERSICHRLVENGADEPDDFRDALEALPSN 292
Query: 244 LRMMYVHSYQSFLWNHAASARVQKH-GTEHVVVGDLVFCKGDDTEKEL 290
L+ ++V++ QS+++N S R+++ + V GD+V + D ++
Sbjct: 293 LQSLFVNAAQSYVFNRILSERLERGLPFDRPVEGDVVCFRDSDAPEDF 340
>gi|336121214|ref|YP_004575989.1| tRNA pseudouridine synthase D [Methanothermococcus okinawensis IH1]
gi|334855735|gb|AEH06211.1| tRNA pseudouridine synthase D [Methanothermococcus okinawensis IH1]
Length = 451
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 87/285 (30%), Positives = 144/285 (50%), Gaps = 37/285 (12%)
Query: 19 RGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVT 78
+ ++NW G F+ F L K N +T +A+ ++K G ++FGFAGTKDK +++TQRV
Sbjct: 88 KNTKNWN---GSFIHFTLEKINWNTMDAIRKLAKRTGTKRKNFGFAGTKDKFALTTQRVG 144
Query: 79 VFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLR-------------- 124
F + KL + + I++ D L +G L GN+FTI +R
Sbjct: 145 CFGVKPEKLEEIKNSIKDIKIRDIQKTNVKLRMGSLWGNKFTIRIRLNDKDNNKNKCDNN 204
Query: 125 -----GVVVDSE---DVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKS 176
G D E D++K ++ + +NY+G+QRFG+ TH+VG + +++S
Sbjct: 205 SNNKNGNNADIEKLNDILK----NIKLDYVLNYYGMQRFGTYRPITHIVGKFIYNRDFES 260
Query: 177 AVKMILDPREGERNEISKAREYYKETD--DIDGTLRKLPRHLVAERAILQCLKKCPGNYL 234
A NEI K E K D D G L+ P E+ +++ K G+Y
Sbjct: 261 AFYTYCGT---PINEIGKTLEARKLVDEGDFRGALKIYPNSQYYEKKMIRHYLKT-GSYK 316
Query: 235 QALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLV 279
++ K +P L+ M+V++YQS+L+N + R + +G E + GD++
Sbjct: 317 ESFKVLPPQLKSMFVNAYQSYLFNEMINKRYE-YGFE-AMEGDVL 359
>gi|332157767|ref|YP_004423046.1| tRNA pseudouridine synthase D [Pyrococcus sp. NA2]
gi|331033230|gb|AEC51042.1| tRNA pseudouridine synthase D [Pyrococcus sp. NA2]
Length = 404
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 137/248 (55%), Gaps = 11/248 (4%)
Query: 34 FHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKR 93
+ L K N +T A+ I+K LG+ GFAGTKD+ +++ Q +++ K ++ L R
Sbjct: 43 YLLKKRNWETMAAIKEIAKRLGMHYSEIGFAGTKDRHALTYQYISICKD--VEVEDLKIR 100
Query: 94 LIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG-RNGFINYFGL 152
I ++ F + L LG LLGN+F I +R +++ L + GF NYFG+
Sbjct: 101 DIELK---FVGYGKRLKLGYLLGNKFLIRVREA--KRPELLPEIIGELKEKGGFPNYFGI 155
Query: 153 QRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDDIDGTLRKL 212
QRFG H+VG LL G+++ A ++ L G E AR+ + ET D++ L++
Sbjct: 156 QRFGERRSVNHIVGKLLLEGKYEEAAEVFLG-YPGNGMEGDDARKRFMETKDVELALKEF 214
Query: 213 PRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKH-GTE 271
P+ L ERA+L ++ G++ +A +PR + +++H++Q++L+N S R+++ +
Sbjct: 215 PKFLRYERAMLYKYRET-GSWKRAFLVLPRPILRIFIHAFQAYLFNLYLSRRIEEGLPLD 273
Query: 272 HVVVGDLV 279
+ GD++
Sbjct: 274 EALPGDII 281
>gi|257386102|ref|YP_003175875.1| tRNA pseudouridine synthase D [Halomicrobium mukohataei DSM 12286]
gi|257168409|gb|ACV46168.1| tRNA pseudouridine synthase D TruD [Halomicrobium mukohataei DSM
12286]
Length = 449
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 86/263 (32%), Positives = 124/263 (47%), Gaps = 25/263 (9%)
Query: 40 NKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRL 99
N DT + +S LGI +AGTKDKR+V+TQ ++ A+ + ++ G +
Sbjct: 65 NWDTNDFASALSDRLGISRERVSWAGTKDKRAVTTQLFSIADADAADVPEID----GAEI 120
Query: 100 GDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVI------------KASANSLGRNGFI 147
+L G L GN F I +R VD D + A A
Sbjct: 121 DVVGRAGRPVLFGDLAGNAFEIIVR--EVDRPDGVDGITEQLREFAGSADAADEPTVAVP 178
Query: 148 NYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYYKETDDID 206
NYFG QRFGS TH VG ++R +W+ AV L +P E E AR Y +ET D +
Sbjct: 179 NYFGQQRFGSKRPITHEVGLAIVRNDWEGAVMAYLGNPNEREPEATQAARAYVEETHDWE 238
Query: 207 GTLRKLPRHLVAERAILQCL----KKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAAS 262
G L + PR L ERA+ L P + AL+ +P L+ ++V++ QS+L+N S
Sbjct: 239 GALERFPRALGYERALCHSLADADDASPAAFRSALETLPTNLQTLFVNAAQSYLFNRVLS 298
Query: 263 ARVQKH-GTEHVVVGDLVFCKGD 284
R+ + + V GD+V C D
Sbjct: 299 ERLDRGLPFDRPVAGDVV-CFAD 320
>gi|383625639|ref|ZP_09950045.1| tRNA pseudouridine synthase D [Halobiforma lacisalsi AJ5]
gi|448695630|ref|ZP_21697455.1| tRNA pseudouridine synthase D [Halobiforma lacisalsi AJ5]
gi|445784387|gb|EMA35200.1| tRNA pseudouridine synthase D [Halobiforma lacisalsi AJ5]
Length = 448
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 83/268 (30%), Positives = 125/268 (46%), Gaps = 20/268 (7%)
Query: 32 LRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALN 91
L F DT + +S LG +AGTKDK +V+TQ +V+ L ++
Sbjct: 57 LVFRATLRGWDTNDFAARLSDALGTSRERVDWAGTKDKYAVTTQLFSVYGADPDDLPEID 116
Query: 92 KRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVV-VDSEDVIKASANSLGRN------ 144
G+ + GL G L GN F + + D+ D I ++ G
Sbjct: 117 ----GVEIEVLGRAGRGLEFGDLAGNAFEVVVSDPAEPDNADEITDELHAFGGRDDEPRE 172
Query: 145 -GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILD-PREGERNEISKAREYYKET 202
G N+FG QRFGS TH VG ++RG+W+ AV L P E E +AR + +ET
Sbjct: 173 IGVPNFFGQQRFGSRRPITHEVGLEVVRGDWEGAVMAYLGRPTEAEPEGTQEARTFLEET 232
Query: 203 DDIDGTLRKLPRHLVAERAILQCLKKC-----PGNYLQALKAIPRTLRMMYVHSYQSFLW 257
D L + P L ER++L L +C P + AL+ +P L+ ++VH+ QS+ +
Sbjct: 233 RDWAEALDRFPNRLRYERSMLHELAECDGEPGPDEFRAALERVPSNLQRLFVHAAQSYAF 292
Query: 258 NHAASARVQKH-GTEHVVVGDLVFCKGD 284
N S R+++ + V GD+V C D
Sbjct: 293 NLMLSRRLERGLPFDRPVAGDVV-CFAD 319
>gi|167534903|ref|XP_001749126.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163772279|gb|EDQ85932.1| predicted protein [Monosiga brevicollis MX1]
Length = 395
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 93/165 (56%), Gaps = 14/165 (8%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
+ F + K N++T + L +++ I FAGTKD+R+++ QR+ + A ++
Sbjct: 231 YTHFTMVKVNQETVQCLTQLARAGKIKDSRLSFAGTKDRRAITVQRIAAERTPAIRIKGG 290
Query: 91 NKRL-------------IGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKAS 137
R GI +GDF K+GL LG L GNRF I LR V S +++
Sbjct: 291 ADRSSADHITPPPPLLGTGIEVGDFADAKDGLSLGNLWGNRFRIVLRNVD-GSPELMTKR 349
Query: 138 ANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL 182
SL GFINYFGLQRFG+ SVP+H VG +L+G++ +A++++L
Sbjct: 350 LQSLREQGFINYFGLQRFGTYSVPSHAVGVAVLQGDYAAAIELLL 394
>gi|222054764|ref|YP_002537126.1| tRNA pseudouridine synthase D TruD [Geobacter daltonii FRC-32]
gi|254789851|sp|B9M644.1|TRUD_GEOSF RecName: Full=tRNA pseudouridine synthase D; AltName: Full=tRNA
pseudouridine(13) synthase; AltName: Full=tRNA
pseudouridylate synthase D; AltName: Full=tRNA-uridine
isomerase D
gi|221564053|gb|ACM20025.1| tRNA pseudouridine synthase D TruD [Geobacter daltonii FRC-32]
Length = 397
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 78/251 (31%), Positives = 131/251 (52%), Gaps = 11/251 (4%)
Query: 35 HLYKENKD----TQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
H+Y E + T EA+ ++K LGI R G+AG KD + ++ Q +++ R + L
Sbjct: 39 HIYAEIEKRGITTLEAIRRLAKALGIGERDVGYAGMKDAKGITRQTISL--PRVAPEQVL 96
Query: 91 NKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYF 150
L GI++ + L +G L GNRF I + GV D+ + A + L + G N+F
Sbjct: 97 GLELPGIKVLSAVPHRNKLKVGHLRGNRFRIRIGGVGADAATIAIAVLDILEKRGVPNFF 156
Query: 151 GLQRFGSGSVPTHLVGATLLRGEWKSAV-KMILDPREGERNEISKAREYYKETDDIDGTL 209
G QR+G+ +HL+G +LR +++ AV +I +P + +A E +K D+ +L
Sbjct: 157 GEQRYGAQG-NSHLIGGAILRNDYRGAVDALIGEPDKVTDERWRRAIEAFK-AGDLAKSL 214
Query: 210 RKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHG 269
P H ER +LQ L K P + +A +A+ LR +Y+ ++Q+ L++ R+
Sbjct: 215 ETFPPHCRTERELLQKLVKQPEAHEKAFRAVHPRLRKLYLSAFQADLFDRVVQQRMDS-- 272
Query: 270 TEHVVVGDLVF 280
+ VV GD+ F
Sbjct: 273 LDQVVHGDVAF 283
>gi|294881036|ref|XP_002769212.1| tRNA pseudouridine synthase D, putative [Perkinsus marinus ATCC
50983]
gi|239872490|gb|EER01930.1| tRNA pseudouridine synthase D, putative [Perkinsus marinus ATCC
50983]
Length = 531
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 112/428 (26%), Positives = 178/428 (41%), Gaps = 86/428 (20%)
Query: 33 RFHLYKENKDTQEALGLIS----KMLGILP-----RSFGFAGTKDKRSVSTQRVTVFKQR 83
+F L K DT EA+ L+S +G+ R FGFAG KD +V+ Q VTV
Sbjct: 93 KFILAKTRTDTLEAVHLLSNAVTSYIGVAAGRGAVRDFGFAGIKDSWAVTVQEVTVKGVA 152
Query: 84 ASKLAALNKRL----IGIRLGDFCYVKEGLLLGQLLGNRFTITLRGV-VVDSEDVIKASA 138
+L R + IR C ++ L G L GNRF I +R V S+ + +
Sbjct: 153 TEELEGAVARFLPSSVQIRDCRPCDREDKLRPGMLGGNRFRIRIREVHPTVSQQQLDDTL 212
Query: 139 NSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAV-KMILDPREGE--------- 188
+ +GFINY G+QRFG G V + VG ++ ++ A+ +++ DP +
Sbjct: 213 GHVRDHGFINYVGMQRFGKGGVASPDVGLAYIKRDYSGAIDRLMSDPAADKPVSVKGGHT 272
Query: 189 -RNEISKAREYYKETDDIDGTLRKLPRHL-------VAERAILQCLKKCPGNYLQALKA- 239
++ S + +++T L + R L A+R +++ + KA
Sbjct: 273 TKHNSSSWQSVWRKTYCASAVLAAMDRQLGKSSGAAYAQRRVMEHMTVAQSQLNMDWKAS 332
Query: 240 -------IPRTLRMMYVHSYQSFLWNHAASARVQK-----HGTEHVVVGDLVFCKGDDTE 287
IP+ LRM+Y H+Y +WN ASA V + G E + GDL+
Sbjct: 333 CRYAFLSIPKYLRMLYAHAYFDRVWNLGASAWVNESQCRDSGREKPLPGDLIRIG----S 388
Query: 288 KELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVL 347
K G V + DE +TD T+ DVVL
Sbjct: 389 KMDGYVK---------------YYDEEEDTDA---------------------TVYDVVL 412
Query: 348 PLPGSRVIYPMNDVAEVYHHLAEKDGINLTE-SLHNVKEFSITSMTGNYRRVFQKPMDFE 406
P PG ++P N V V DG+++ + ++ + + + G+YR V + +
Sbjct: 413 PRPGRDALFPDNFVGTVMRQYYAFDGVDVEDVTVEQNQAGEVWDILGDYRNVLSRAAGLK 472
Query: 407 WELLTYID 414
W+L+ D
Sbjct: 473 WQLVEEAD 480
>gi|409728388|ref|ZP_11271255.1| tRNA pseudouridine synthase D [Halococcus hamelinensis 100A6]
gi|448724812|ref|ZP_21707317.1| tRNA pseudouridine synthase D [Halococcus hamelinensis 100A6]
gi|445785021|gb|EMA35817.1| tRNA pseudouridine synthase D [Halococcus hamelinensis 100A6]
Length = 450
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 125/274 (45%), Gaps = 19/274 (6%)
Query: 39 ENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIR 98
EN DT + +S LGI +AGTKDKR+V+TQ +V LA ++ + I
Sbjct: 64 ENWDTNDFARALSNRLGISRERVDWAGTKDKRAVTTQLFSVRDGDPETLADVDFDGVTIE 123
Query: 99 LGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRN-----GFINYFGLQ 153
L GL G L GN F + +R D I G G NYFG Q
Sbjct: 124 L--VGRAGRGLQFGDLSGNAFEVAVRDADTDPVAAITEDLREFGGEEGETVGLPNYFGGQ 181
Query: 154 RFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYYKE------TDDID 206
RFGS TH VG + R +WK AV L P + E +AR + + +D
Sbjct: 182 RFGSLRPVTHEVGLAVARDDWKGAVVAYLGGPDDAEPPGTREARGFVDDEVAAAGDEDWA 241
Query: 207 GTLRKLPRHLVAERAILQCLKK----CPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAAS 262
L + PR L ERA+L L + P +Y AL+ P L+ ++V++ QS+++N S
Sbjct: 242 AALDRFPRRLGFERAMLHRLVEDGAGGPEDYRAALETAPTNLQRLFVNAAQSYVFNRILS 301
Query: 263 ARVQKH-GTEHVVVGDLVFCKGDDTEKELGCVNP 295
AR+ + V GD+V G+ +L +P
Sbjct: 302 ARLDAGLPFDAAVAGDVVCFTGEGGRDDLAVPDP 335
>gi|399575570|ref|ZP_10769328.1| hypothetical protein HSB1_13670 [Halogranum salarium B-1]
gi|399239838|gb|EJN60764.1| hypothetical protein HSB1_13670 [Halogranum salarium B-1]
Length = 446
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 93/299 (31%), Positives = 141/299 (47%), Gaps = 23/299 (7%)
Query: 16 FDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQ 75
FD++ + P G + + DT + + ++ +GI +AGTKDK +V+TQ
Sbjct: 42 FDTQPLDADPGDFGHLV-LRVTLRGWDTNDFVRQLTNQMGISRERVSWAGTKDKHAVTTQ 100
Query: 76 RVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRG-----VVVDS 130
TV + + + +N I + GL G L GN FTI + V D
Sbjct: 101 LFTVKQADSEDIPEVNNADIEV----LGRSGRGLQFGDLAGNAFTIRVHDPDRPETVDDI 156
Query: 131 EDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAV-KMILDPREGER 189
D + A A S G NYFG QRFGS TH VG ++RGEW+ AV + P E E
Sbjct: 157 TDNLHAFAGSDEHVGVPNYFGQQRFGSHRPVTHTVGLHVVRGEWREAVLAYVGHPAESEP 216
Query: 190 NEISKAREYYKE---TDDIDG--TLRKLPRHLVAERAILQCLKK----CPGNYLQALKAI 240
AR + E +DD D L ++P L ER++L L + + AL+A+
Sbjct: 217 EGTQAARAFVDEQAASDDPDWQEALEQMPNRLRYERSMLHRLHQDGDESDDEWRHALEAV 276
Query: 241 PRTLRMMYVHSYQSFLWNHAASARVQKH-GTEHVVVGDLVFCKGDDTEKELGCVNPEFE 298
P L+ ++V++ QS+++N S R+ + + V GD+V C D E G V P+ +
Sbjct: 277 PSNLQRLFVNAAQSYIFNRVLSERLDRGLPFDKPVEGDVV-CFADRDAPE-GLVMPDVD 333
>gi|254167054|ref|ZP_04873907.1| tRNA pseudouridine synthase D [Aciduliprofundum boonei T469]
gi|197623910|gb|EDY36472.1| tRNA pseudouridine synthase D [Aciduliprofundum boonei T469]
Length = 410
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 125/242 (51%), Gaps = 15/242 (6%)
Query: 40 NKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRL 99
N +T + ++SK LGI FAG KDKR V+ Q + +N L + +
Sbjct: 56 NWETNRFVKILSKNLGISRHRIKFAGNKDKRGVTIQYFCILNYPGK----INLNLKDVEI 111
Query: 100 GDFCYVKEGLLLGQLLGNRFTITLRGVVVDSE-DVIKASANSLGRNGFINYFGLQRFGSG 158
D + +G L GN+F I +R D D I+ N F N+FG+QRFG+
Sbjct: 112 LDEFRSSREINIGDLYGNKFEIVVRDAKCDDRVDKIEEELNGF----FPNFFGVQRFGAS 167
Query: 159 SVPTHLVGATLLRGEWKSAVKMILD-PREGERNEISKAREYYKETDDIDGTLRKLPRHLV 217
TH+VG +++G + AV+ + P + ++ R+ + E D ++ + ++
Sbjct: 168 RPITHIVGKFIIKGRYDEAVRYYIGFPSSFDEDD---GRKIFFENMDAREAIKNISKNAS 224
Query: 218 AERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGD 277
ERA+L L K G+Y+ ALK +P+ L +++VH YQS++++ S R+ K G + V VGD
Sbjct: 225 YERAMLNYLIKNEGDYVGALKQLPKNLLLLFVHGYQSYIFDKILSKRL-KIGID-VQVGD 282
Query: 278 LV 279
++
Sbjct: 283 II 284
>gi|448374261|ref|ZP_21558146.1| tRNA pseudouridine synthase D [Halovivax asiaticus JCM 14624]
gi|445660938|gb|ELZ13733.1| tRNA pseudouridine synthase D [Halovivax asiaticus JCM 14624]
Length = 456
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 90/281 (32%), Positives = 131/281 (46%), Gaps = 33/281 (11%)
Query: 42 DTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGD 101
DT + +S +GI +AGTKDKR+V+TQ ++ + L L+ I +
Sbjct: 67 DTNDFAAALSDAVGISRERVSWAGTKDKRAVTTQLFSIRDVEPADLPTLSNADIEV---- 122
Query: 102 FCYVKEGLLLGQLLGNRFTI--------TLRGVVVDS------EDVIKASANSLGRN--- 144
L G L GN F I T G V D+ A A+S+ +
Sbjct: 123 VGRAGRSLTFGDLAGNEFEIVVSDPDDPTAAGSVRDALADFGGAQSAPADADSVPSDSTT 182
Query: 145 -GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYYKET 202
G N+FG QRFGS TH VG +LR +W+ AV L +P E E +ARE+ ET
Sbjct: 183 VGVPNFFGQQRFGSYRPITHEVGLAILRDDWEGAVMAYLGNPHEAEPASTREAREFLLET 242
Query: 203 DDIDGTLRKLPRHLVAERAILQCLKKCPGN-----YLQALKAIPRTLRMMYVHSYQSFLW 257
D D L + P HL ER++L L + + + +AL P L+ ++VH+ QS+ +
Sbjct: 243 RDWDEALDRYPGHLRYERSLLHVLAESDSDPDETTFREALGRFPSNLQRLFVHAAQSYAF 302
Query: 258 NHAASARVQKH-GTEHVVVGDLV-FCKGDDTEKELGCVNPE 296
N S R+ + + V GD+V F DT+ G V P+
Sbjct: 303 NLMLSERLDRGLPFDRPVAGDVVCFI---DTDAPDGLVVPD 340
>gi|159042137|ref|YP_001541389.1| tRNA pseudouridine synthase D TruD [Caldivirga maquilingensis
IC-167]
gi|157920972|gb|ABW02399.1| tRNA pseudouridine synthase D TruD [Caldivirga maquilingensis
IC-167]
Length = 443
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 133/261 (50%), Gaps = 19/261 (7%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G + + K DT + +S+ LG+ + G KD ++V+TQ +++ +L
Sbjct: 61 GPYTWIIIEKRGIDTISLVVTLSRRLGVKLSDVSYGGLKDTKAVATQVISIKGITPMQLE 120
Query: 89 ALNKRLIG--IRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGF 146
L+ +G +R+ + + ++ GN+FTI +RG+ D E V + G
Sbjct: 121 GLD---LGPRVRVVASFSMDKPFTPSEIWGNQFTIVIRGITGD-ESVFNCVIEQVMERGL 176
Query: 147 INYFGLQRFGSGSVPTHLVGATLLRGEWKSAVK-MILDPREGERNEISKARE------YY 199
+Y+G QRFG +H++G ++ G+++ AV+ ++ P E + I KARE Y
Sbjct: 177 PSYYGYQRFGLRRPNSHIIGKLIIMGDFEKAVEELVAKPYPYEDDTIRKARELAGMGEYS 236
Query: 200 KETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNH 259
K + + ++R LP ER +L+ L PGNY+ AL +P L +YV +YQS+L+N
Sbjct: 237 KALELLPRSIRYLP-----ERLVLKQLLMDPGNYMNALSKLPVNLLKLYVEAYQSYLFNK 291
Query: 260 AASARVQKH-GTEHVVVGDLV 279
A SAR+ + V GDL+
Sbjct: 292 ALSARIGRGISINRAVDGDLI 312
>gi|440492859|gb|ELQ75392.1| hypothetical protein THOM_1690 [Trachipleistophora hominis]
Length = 546
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 136/254 (53%), Gaps = 31/254 (12%)
Query: 34 FHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKR 93
F L KEN+DT EA IS+ L + ++ GFAG KD+R+++ QR+++ + L+
Sbjct: 126 FVLRKENEDTVEACMRISRELNVPFKNIGFAGNKDRRAITYQRISISDVYYKDVKHLH-- 183
Query: 94 LIGIRLGDFCYVKE--GLLLGQLLGNRFTITLR--------GVVVDSEDVIKASANSLGR 143
C +E L LG+ GNRF I +R G + + K N+
Sbjct: 184 ---------CVRRERGHLKLGRFKGNRFIILVRPKEDPSETGTCSLDDAIRKMDVNT--- 231
Query: 144 NGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETD 203
F N+FG+QRFG ++ HLVG L + +++ A+ +I+ +E + + + +A+ +
Sbjct: 232 KKFPNFFGIQRFGR-NLDNHLVGKLLHQKKYEDAINLIMMVKESDGDYVKEAKHSFY-NK 289
Query: 204 DIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASA 263
+ D + PR+ +AE++I + + K Y +A+ +I +R++Y+H+YQS+++N S
Sbjct: 290 EYDQAYAQFPRNCLAEKSICRNISK---GYRRAIFSIKEKIRILYLHAYQSYIFNQELSK 346
Query: 264 RVQK--HGTEHVVV 275
+ + GTE +++
Sbjct: 347 LLTEKYEGTEELIL 360
>gi|254167652|ref|ZP_04874503.1| tRNA pseudouridine synthase D [Aciduliprofundum boonei T469]
gi|289596914|ref|YP_003483610.1| tRNA pseudouridine synthase D TruD [Aciduliprofundum boonei T469]
gi|197623461|gb|EDY36025.1| tRNA pseudouridine synthase D [Aciduliprofundum boonei T469]
gi|289534701|gb|ADD09048.1| tRNA pseudouridine synthase D TruD [Aciduliprofundum boonei T469]
Length = 410
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 74/242 (30%), Positives = 124/242 (51%), Gaps = 15/242 (6%)
Query: 40 NKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRL 99
N +T + ++SK LGI FAG KDKR V+ Q + +N L + +
Sbjct: 56 NWETNRFVKILSKNLGISRHRIKFAGNKDKRGVTIQYFCILNYPGK----INLNLKDVEI 111
Query: 100 GDFCYVKEGLLLGQLLGNRFTITLRGVVVDSE-DVIKASANSLGRNGFINYFGLQRFGSG 158
D + +G L GN+F I +R D D I+ N F N+FG+QRFG+
Sbjct: 112 LDEFRSSREINIGDLYGNKFEIVVRDAKCDDRVDKIEEELNGF----FPNFFGVQRFGAS 167
Query: 159 SVPTHLVGATLLRGEWKSAVKMILD-PREGERNEISKAREYYKETDDIDGTLRKLPRHLV 217
TH+VG +++G + AV+ + P + ++ R+ + E D ++ + ++
Sbjct: 168 RPITHIVGKFIIKGRYDEAVRYYIGFPSSFDEDD---GRKIFFENMDAREAIKNISKNAS 224
Query: 218 AERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGD 277
ERA+L L K +Y+ ALK +P+ L +++VH YQS+++N S R++ G + V VGD
Sbjct: 225 YERAMLNYLIKNERDYVGALKQLPKNLLLLFVHGYQSYIFNKILSKRLE-IGID-VQVGD 282
Query: 278 LV 279
++
Sbjct: 283 II 284
>gi|163782455|ref|ZP_02177453.1| tRNA pseudouridine synthase D [Hydrogenivirga sp. 128-5-R1-1]
gi|159882488|gb|EDP75994.1| tRNA pseudouridine synthase D [Hydrogenivirga sp. 128-5-R1-1]
Length = 379
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 82/265 (30%), Positives = 135/265 (50%), Gaps = 16/265 (6%)
Query: 26 EQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRAS 85
EQ G+F F + K+N T EA+ ++K LG+ + GF G KDK S+S Q ++V R
Sbjct: 22 EQKGRFAYFLMRKKNLSTLEAVREVAKRLGVPEKRIGFGGLKDKNSLSEQFISV--DRPP 79
Query: 86 KLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNG 145
++ + + ++ Y + LG + GN F ITLR + + +K + R G
Sbjct: 80 EIKEFTEENLSLKF--LGYGNRPVSLGDIEGNYFEITLRRIGDRKREFLKERIPFVKRFG 137
Query: 146 FINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPRE--GERNEISKAREYYKETD 203
F NYFG QRFGS + + LLR +++ AVK L + G + + +A +KE
Sbjct: 138 FENYFGEQRFGSVRYAGNFIVKYLLRNDYEGAVKEYLTSLKDRGRKKALLRAWGRWKE-- 195
Query: 204 DIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAAS- 262
LR +P+ E +++ L K +Y +AL +P+++++M++ +YQS+LWN +
Sbjct: 196 ----FLRIMPQSSHPEINLVKSLMKGK-SYEEALSGLPKSIKLMFLFAYQSYLWNRYLNT 250
Query: 263 --ARVQKHGTEHVVVGDLVFCKGDD 285
R KH + + L F K D
Sbjct: 251 FVVRYFKHCSVPFLKWRLSFIKEVD 275
>gi|449528935|ref|XP_004171457.1| PREDICTED: multisubstrate pseudouridine synthase 7-like, partial
[Cucumis sativus]
Length = 402
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 49/55 (89%), Positives = 51/55 (92%)
Query: 2 GRNSKKRKERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGI 56
GR SKKRKERGD PFDSRGS+NWPE +GKFLRFHLYKENKDTQEALGLI KMLGI
Sbjct: 162 GRFSKKRKERGDKPFDSRGSDNWPEHVGKFLRFHLYKENKDTQEALGLIGKMLGI 216
>gi|307596333|ref|YP_003902650.1| tRNA pseudouridine synthase D TruD [Vulcanisaeta distributa DSM
14429]
gi|307551534|gb|ADN51599.1| tRNA pseudouridine synthase D TruD [Vulcanisaeta distributa DSM
14429]
Length = 449
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 114/224 (50%), Gaps = 9/224 (4%)
Query: 49 LISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEG 108
+IS+ LG+ R F G KD +V++Q V+V +++ R I++ + +
Sbjct: 85 VISRKLGVNYRDVSFGGLKDAIAVTSQVVSVRGVSINEVPNDFGR--DIKVLNAVSMDRA 142
Query: 109 LLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGAT 168
+ GN FTI +R + V +D I N L G Y+G QRFG +H++G
Sbjct: 143 FTTSDIWGNEFTIKVRNIDVSRKDSINCVINQLMERGLPTYYGYQRFGLKRPNSHIIGKH 202
Query: 169 LLRGEWKSAVKMILD---PREGERNEISKAREYYKETDDIDGTLRKLPR--HLVAERAIL 223
++ GE++ AV +L P E R I + RE+ T D L +PR ERA+L
Sbjct: 203 IIFGEFEEAVNELLTHAYPMEPPR--IREVREFIARTGDYSKALELMPRSYRYYPERAVL 260
Query: 224 QCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQK 267
+ L P +++ AL+ +P L +YV SYQS+L+N A S R+ +
Sbjct: 261 KQLASNPRDFVNALRKLPHELLNLYVESYQSYLFNLALSERIGR 304
>gi|448355462|ref|ZP_21544213.1| tRNA pseudouridine synthase D [Natrialba hulunbeirensis JCM 10989]
gi|445634990|gb|ELY88162.1| tRNA pseudouridine synthase D [Natrialba hulunbeirensis JCM 10989]
Length = 478
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 95/323 (29%), Positives = 139/323 (43%), Gaps = 49/323 (15%)
Query: 6 KKRKERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAG 65
++R+ P D+ P L F DT + +S LGI +AG
Sbjct: 37 RERERFSTEPIDA------PTDAYPHLVFRATLRGWDTNDFATRLSDALGISRERVNWAG 90
Query: 66 TKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRG 125
TKDK +V+TQ +V+ + A + G L L G L GN F I
Sbjct: 91 TKDKYAVTTQLFSVYDTSSDTGATALPDIDGADLEVLGRAGRSLEFGDLAGNAFEI---- 146
Query: 126 VVVDSE------------------DVIKA----SANSLGRNGFINYFGLQRFGSGSVPTH 163
VV D++ D A SA G N+FG QRFGS TH
Sbjct: 147 VVSDADHPKTASQIADELCEFGGLDAATAGDSGSATETTPVGVPNFFGQQRFGSRRPVTH 206
Query: 164 LVGATLLRGEWKSAVKMILD-PREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAI 222
VG ++RG+W+ AV L P + E +AR + +ET D L + P L ER++
Sbjct: 207 EVGLEIVRGDWEGAVMAYLGAPADAEPEGTQEARRFIEETRDWQEALDRFPNRLRYERSM 266
Query: 223 LQCLKKC-----------PGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKH-GT 270
L L +C P ++ AL+ +P L+ ++VH+ QS+ +N S R+++
Sbjct: 267 LHELAECTASSDGTGDPDPADFRAALERLPSNLQRLFVHAAQSYAFNLMLSERLERGLPF 326
Query: 271 EHVVVGDLVFC---KGDDTEKEL 290
+ V GD+V C GDD +EL
Sbjct: 327 DRPVAGDVV-CFADTGDDVPEEL 348
>gi|156082445|ref|XP_001608707.1| tRNA pseudouridine synthase D (TruD) domain containing protein
[Babesia bovis T2Bo]
gi|154795956|gb|EDO05139.1| tRNA pseudouridine synthase D (TruD) domain containing protein
[Babesia bovis]
Length = 809
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 98/163 (60%), Gaps = 9/163 (5%)
Query: 26 EQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRAS 85
++L ++L F++ K ++ T E ++ + L AG KD+R+++TQR + + +
Sbjct: 269 QKLKQYLHFNVQKRDRSTHEITNMLCRTLHRSSHDIFTAGNKDRRAITTQRFCIRRAKIE 328
Query: 86 K-LAALN--KRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASAN--S 140
L A+ K L + + DF Y + L LG L GN F +T+RG+ DV +A N S
Sbjct: 329 DFLGAMTHPKWLDSVVVADFKYSPDRLKLGDLRGNTFWVTIRGI----SDVKQALTNLES 384
Query: 141 LGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILD 183
L NGF+NYFGLQRFGS V TH+VGA +LR ++++ V++I++
Sbjct: 385 LRYNGFLNYFGLQRFGSLHVGTHVVGAAMLRRDYETVVRLIVN 427
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 82/341 (24%), Positives = 130/341 (38%), Gaps = 86/341 (25%)
Query: 204 DIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASA 263
D D + P+ ER ++ L++ L+ IP + +YVH+ QS ++N +
Sbjct: 519 DCDSVFKLAPKISFIERDLMNGLERN-KPVEDVLRRIPTNVLSIYVHAAQSLVFNFVLTE 577
Query: 264 RVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGR 323
RV+++G + VV GDLV + E ES + +D++ + P P+
Sbjct: 578 RVKRYGMKPVV-GDLV------VRSSQLPLTTSVEGESIDCSDEAQEIKLFPHNMEPEA- 629
Query: 324 HNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLA-EKDGI-------- 374
VT D++ ++I DVVLPLPG V YP + VY + E+ G+
Sbjct: 630 ----YVVTPEDLD--MWSIYDVVLPLPGDNVEYP-EFLKPVYERVVNEEFGMPLEMFSTI 682
Query: 375 --NLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKL 432
NL E L +E + + G YR + + ++
Sbjct: 683 IENLPEHLKG-RERCMVGVGGGYRHIVARAHGLQY------------------------- 716
Query: 433 VNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADS 492
+IV E G E+L I+L + +PH + S
Sbjct: 717 -HIVPELARTVG-----------HMENLPPYIRLKNQTRYPGST----EPH---AINSGS 757
Query: 493 QGKQMA--------------LKLGLTLPSSCYATMAIRELL 519
Q K A L + LP SCY T A+RE+L
Sbjct: 758 QSKNEAEMFEMNYKLVTRCTLVVSCALPKSCYLTCALREVL 798
>gi|134046025|ref|YP_001097511.1| pseudouridylate synthase [Methanococcus maripaludis C5]
gi|189036631|sp|A4FYL2.1|TRUD_METM5 RecName: Full=Probable tRNA pseudouridine synthase D; AltName:
Full=tRNA pseudouridine(13) synthase; AltName: Full=tRNA
pseudouridylate synthase D; AltName: Full=tRNA-uridine
isomerase D
gi|132663650|gb|ABO35296.1| Pseudouridylate synthase [Methanococcus maripaludis C5]
Length = 390
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 78/248 (31%), Positives = 130/248 (52%), Gaps = 8/248 (3%)
Query: 20 GSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTV 79
G E+ + G F+ F + K N +T +AL I + ++FGFAGTKDK +V+TQR
Sbjct: 45 GFEDVEKWHGSFIHFTVEKTNWNTMDALKQIVRTTKTKRKNFGFAGTKDKFAVTTQRFGC 104
Query: 80 FKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASAN 139
F + +L +N + I IR D + L +G L GN+FTI +RG+ + +++ + S
Sbjct: 105 FGLKKEQLENINIKDIVIR--DVQKSNKKLRMGDLWGNKFTIKIRGLDLSKKEIKRIS-- 160
Query: 140 SLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYY 199
L + +NY+G+QRFG TH+VG + +++SA E + +AR+
Sbjct: 161 DLKLDYVLNYYGIQRFGLIRPITHIVGKFIYERDFESAFYTYCGTPISETGDSLEARQLV 220
Query: 200 KETDDIDGTLRKLPR-HLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWN 258
+ + L+ R H +R I Q LK ++ A A+P L M+V++YQ++L+N
Sbjct: 221 -DVGEFKKALKLFNRNHDYEKRLIQQYLK--YKDFKMAFTALPPQLNSMFVNAYQAYLFN 277
Query: 259 HAASARVQ 266
+ R +
Sbjct: 278 EMINKRFE 285
>gi|197119149|ref|YP_002139576.1| tRNA pseudouridine 13 synthase [Geobacter bemidjiensis Bem]
gi|197088509|gb|ACH39780.1| tRNA pseudouridine 13 synthase [Geobacter bemidjiensis Bem]
Length = 420
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 80/246 (32%), Positives = 127/246 (51%), Gaps = 7/246 (2%)
Query: 36 LYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLI 95
L K T EAL I+K LG+ R G+AG KD V+ Q V++ + K+ AL +
Sbjct: 66 LEKRGIATLEALRRIAKTLGVQERDLGYAGMKDAIGVTRQTVSIPRVAPDKVLALE--IP 123
Query: 96 GIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQRF 155
GI++ L LG L GNRF I +R V + +A+ + R G N FG+QR+
Sbjct: 124 GIKILSARMHGNKLRLGHLKGNRFVIRVRDVAQGAVKNAEAALEVMTRRGVPNRFGVQRY 183
Query: 156 GSGSVPTHLVGATLLRGEWKSAV-KMILDPREGERNEISKAREYYKETDDIDGTLRKLPR 214
G+ TH +GA +LR E+KSAV ++I DP +A E Y+ +++ +L P
Sbjct: 184 GAQG-NTHEIGAAMLRREFKSAVDRLIGDPAAVTDERWRQAIEAYRR-GEVEESLALFPG 241
Query: 215 HLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVV 274
H ER +L L + P + +A ++ ++ +Y+ ++QS L++ R+ + V
Sbjct: 242 HFRVERELLTRLVQRPDGFERAFNSVQPRMKRLYLSAFQSSLFDLVLEKRLDSF--DKVN 299
Query: 275 VGDLVF 280
VGD+ F
Sbjct: 300 VGDIAF 305
>gi|150401185|ref|YP_001324951.1| tRNA pseudouridine synthase D TruD [Methanococcus aeolicus
Nankai-3]
gi|189036630|sp|A6UV17.1|TRUD_META3 RecName: Full=Probable tRNA pseudouridine synthase D; AltName:
Full=tRNA pseudouridine(13) synthase; AltName: Full=tRNA
pseudouridylate synthase D; AltName: Full=tRNA-uridine
isomerase D
gi|150013888|gb|ABR56339.1| tRNA pseudouridine synthase D TruD [Methanococcus aeolicus
Nankai-3]
Length = 402
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/264 (29%), Positives = 133/264 (50%), Gaps = 10/264 (3%)
Query: 22 ENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFK 81
EN + G F+ F + K N +T +A+ +++ ++FGFAGTKDK +++TQRV F
Sbjct: 48 ENKHDWNGSFIHFTMEKINWNTMDAIRELARRTKTKRKNFGFAGTKDKFALTTQRVGCFG 107
Query: 82 QRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDS--EDVIKASAN 139
+ KL + + I + D L +G L GN+FTI +R D D+ K
Sbjct: 108 IKPEKLEEIKNSIKDITIRDIQKTNIKLRMGHLWGNKFTIKIRLNETDKYYNDISKYEEI 167
Query: 140 SLGRN--GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKARE 197
+N +NY+G QRFG+ TH+VG + +++SA E + +ARE
Sbjct: 168 LKNKNLDYILNYYGTQRFGTFRPITHIVGKFIYNRDFESAFYTYCGAPINETGVVKEARE 227
Query: 198 YYKETDDIDGTLRKLPR--HLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSF 255
+ + + L+ P+ + + I +K GNY + K +P L M+V++YQS+
Sbjct: 228 MV-DNGEFEKALKLFPKKSYYNEIKMIRHYIK--TGNYKECFKVLPPQLSSMFVNAYQSY 284
Query: 256 LWNHAASARVQKHGTEHVVVGDLV 279
L+N + R + + + ++ GD+V
Sbjct: 285 LFNEMINIRHRDYSFD-ILDGDVV 307
>gi|119719595|ref|YP_920090.1| pseudouridylate synthase [Thermofilum pendens Hrk 5]
gi|119524715|gb|ABL78087.1| Pseudouridylate synthase [Thermofilum pendens Hrk 5]
Length = 444
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/296 (29%), Positives = 146/296 (49%), Gaps = 13/296 (4%)
Query: 24 WPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ- 82
+ E G+F L K DT A +++ G+ R G AG KD +V+ Q +++ +
Sbjct: 54 YAEGAGEFTWLVLEKRKIDTVSAARAVARFFGLKLRDVGIAGLKDTSAVTYQFISIPGEV 113
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLL--GQLLGNRFTITLRGVVVDSEDVIKASANS 140
+ + N L R+ C + L G L GN F + +RG + + ++A
Sbjct: 114 KMESIEEFN--LSHKRVKLHCPFRRPFALKPGMLYGNFFNVKVRGA--ECLECLEALLRE 169
Query: 141 LG-RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVK-MILDPREGERNEISKAREY 198
L + NY+G QRFG+ TH+VG +L GE+K AV+ +I GE +AR +
Sbjct: 170 LKEKKAVPNYYGYQRFGTVRPVTHVVGRMILLGEFKEAVEELIYKVFPGESQVSRRARLF 229
Query: 199 YKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWN 258
E+ D L P+ L +ERA+L+ L + PG+Y+ AL+A+ ++ +++ +YQ++L+N
Sbjct: 230 LSESGDPLKALELFPKSLKSERAVLRHLARHPGDYVGALRAVSPYVKKLFIGAYQAYLFN 289
Query: 259 HAASARVQKHGTEHV-VVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDE 313
S R+++ + + V GD V G EK G V + +N +DE
Sbjct: 290 KLLSKRIERGLSYYYPVPGDTV---GIFREKRGGEVTGVLKVNDANVEKVKRWIDE 342
>gi|429190943|ref|YP_007176621.1| tRNA pseudouridine synthase, TruD family [Natronobacterium gregoryi
SP2]
gi|448327050|ref|ZP_21516388.1| tRNA pseudouridine synthase D [Natronobacterium gregoryi SP2]
gi|429135161|gb|AFZ72172.1| tRNA pseudouridine synthase, TruD family [Natronobacterium gregoryi
SP2]
gi|445609248|gb|ELY63054.1| tRNA pseudouridine synthase D [Natronobacterium gregoryi SP2]
Length = 450
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 125/267 (46%), Gaps = 21/267 (7%)
Query: 42 DTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGD 101
DT + +S LG+ +AGTKDK +V+TQ +V LAAL + G+ L
Sbjct: 67 DTNDFAARVSDALGVSRERVDWAGTKDKYAVTTQLFSVDGVDPDALAALE--IDGVDLEV 124
Query: 102 FCYVKEGLLLGQLLGNRFTITLR--------GVVVDSEDVIKASANSLGRNGFINYFGLQ 153
GL G L GN F + + + D + G N+FG Q
Sbjct: 125 LGRAGRGLEFGDLAGNAFELVVSEPNRPETAAEITDELREFGGRESEDREIGVPNFFGQQ 184
Query: 154 RFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYYKETDDIDGTLRKL 212
RFGS TH VG + RG+W+ AV L +P + E +AR + +ET D + L +
Sbjct: 185 RFGSRRPITHEVGLAIARGDWEGAVMAYLGNPADAEPEGTQEARAFLEETRDWEEALDRF 244
Query: 213 PRHLVAERAILQCLKKCPGN-----YLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQK 267
P L ER++L L +C G+ + AL+ +P L+ ++VH+ QS+ +N R+++
Sbjct: 245 PNRLRYERSMLHELAECTGDPDEKTFRAALERVPSNLQRLFVHAAQSYAFNLMLGERLER 304
Query: 268 H-GTEHVVVGDLVFC---KGDDTEKEL 290
+ V GD+V C G D EL
Sbjct: 305 GLPFDRPVEGDVV-CFSDTGSDVPDEL 330
>gi|448349582|ref|ZP_21538415.1| tRNA pseudouridine synthase D [Natrialba taiwanensis DSM 12281]
gi|445639548|gb|ELY92653.1| tRNA pseudouridine synthase D [Natrialba taiwanensis DSM 12281]
Length = 481
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/291 (29%), Positives = 125/291 (42%), Gaps = 47/291 (16%)
Query: 42 DTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGD 101
DT + IS LG+ +AGTKDK +V+TQ +V+ A L +N L
Sbjct: 67 DTNDFAARISDALGVSRERINWAGTKDKYAVTTQLFSVYSTDAVDLPDIND----AELEP 122
Query: 102 FCYVKEGLLLGQLLGNRFTITLR----------------------GVVVDSEDVIKASAN 139
L G L GN F + + G V ++D +
Sbjct: 123 LGRAGRSLEFGDLAGNAFEVVISDPAEPANATDIARELRAFGSFDGTVGRTDDDSDGGPS 182
Query: 140 SLGRN----------GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILD-PREGE 188
+ G G NYFG QRFGS TH VG + RG+W+ AV L P E E
Sbjct: 183 ADGSGATEPSDSAPIGVPNYFGQQRFGSRRPVTHEVGLEIARGDWEGAVMAYLGAPTEAE 242
Query: 189 RNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKC-----PGNYLQALKAIPRT 243
+ AR + +ET D L + P L ER++L L C P ++ AL+++P
Sbjct: 243 PDGTQAARTFIEETRDWQQALDRFPNRLRYERSMLHELAACDGDPGPDDFRAALESVPSN 302
Query: 244 LRMMYVHSYQSFLWNHAASARVQKH-GTEHVVVGDLVFC---KGDDTEKEL 290
L+ ++VH+ QS+ +N R+++ + V GD V C GDD EL
Sbjct: 303 LQRLFVHAAQSYAFNLFLGERLERGLPFDRPVAGDGV-CFTDTGDDIPAEL 352
>gi|428173788|gb|EKX42688.1| hypothetical protein GUITHDRAFT_141088 [Guillardia theta CCMP2712]
Length = 185
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 96/164 (58%), Gaps = 6/164 (3%)
Query: 134 IKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEIS 193
++ A + GFINYFGLQRFG+GSVP+ VG ++ EW+ AV++I+DP +
Sbjct: 1 MQKQARRMKSKGFINYFGLQRFGTGSVPSAEVGKWIILREWEKAVEVIMDPATAKDPGER 60
Query: 194 KAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQ 253
+A+ YKE + L ++P +E AIL+ L K G + +A+ ++ R MY S++
Sbjct: 61 RAKVKYKENGNAGIALSRMPPFAKSETAILRELAKG-GGHKEAIFSLSN--RNMYASSFE 117
Query: 254 SFLWNHAASARVQKHGTEHVVVGDLVF---CKGDDTEKELGCVN 294
S LWN AA+ R++ +G++ V GDLV +G ++ +G N
Sbjct: 118 SLLWNMAATRRIELYGSKEVAAGDLVLLTDARGYTQKRNMGRKN 161
>gi|448383243|ref|ZP_21562594.1| tRNA pseudouridine synthase D [Haloterrigena thermotolerans DSM
11522]
gi|445660035|gb|ELZ12833.1| tRNA pseudouridine synthase D [Haloterrigena thermotolerans DSM
11522]
Length = 458
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 130/296 (43%), Gaps = 41/296 (13%)
Query: 32 LRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALN 91
L F DT + +S LGI +AGTKDK +V+TQ +V+ +L ++
Sbjct: 57 LVFRATLRGWDTNDFAARVSDALGISRERVNWAGTKDKYAVTTQLFSVYGADPEELPEID 116
Query: 92 KRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSE-----DVIKASANSLG---- 142
G+ + L G L GN F + VV D E D I + G
Sbjct: 117 ----GVEIEVLGRAGRNLEFGDLAGNAFEL----VVTDPERPDNADAITDELRTFGGLAD 168
Query: 143 ---------------RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPRE 186
G N+FG QRFGS TH VG + R +W+ AV L +P +
Sbjct: 169 EHRSDGADGSSEDATSIGVPNFFGQQRFGSRRPVTHKVGLAIARDDWEGAVMAYLGNPTD 228
Query: 187 GERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKC-----PGNYLQALKAIP 241
E +AR + ET D L ++P L ER+++ L +C P Y +AL+ +P
Sbjct: 229 AEPAGTQEARAFVAETRDWQEALERVPHRLRYERSMIHALAECDGEPGPDQYREALERVP 288
Query: 242 RTLRMMYVHSYQSFLWNHAASARVQKH-GTEHVVVGDLVFCKGDDTEKELGCVNPE 296
L+ ++VH+ QS+ +N S R+++ + V GD+V DT+ G P+
Sbjct: 289 SNLQRLFVHAAQSYAFNLMLSERLERGLPFDRPVEGDVVCFS--DTDAPDGVALPD 342
>gi|289582063|ref|YP_003480529.1| tRNA pseudouridine synthase [Natrialba magadii ATCC 43099]
gi|448282524|ref|ZP_21473810.1| tRNA pseudouridine synthase D [Natrialba magadii ATCC 43099]
gi|289531616|gb|ADD05967.1| tRNA pseudouridine synthase D TruD [Natrialba magadii ATCC 43099]
gi|445576066|gb|ELY30525.1| tRNA pseudouridine synthase D [Natrialba magadii ATCC 43099]
Length = 480
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 95/323 (29%), Positives = 139/323 (43%), Gaps = 49/323 (15%)
Query: 6 KKRKERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAG 65
++R+ P D+ P L F DT + +S LGI +AG
Sbjct: 37 RERERFATEPIDA------PTDAYPHLVFRATLRGWDTNDFATRLSDALGISRERVNWAG 90
Query: 66 TKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRG 125
TKDK +V+TQ +V+ + A + G L L G L GN+F I
Sbjct: 91 TKDKYAVTTQLFSVYDTTSDAGATGLPDIDGADLEVLGRAGRSLEFGDLAGNQFEI---- 146
Query: 126 VVVDSED-------------------VIKASANSLGRN---GFINYFGLQRFGSGSVPTH 163
VV D++ V A A+S G N+FG QRFGS TH
Sbjct: 147 VVSDADQPETASQIADELCEFGGLDAVGAAGADSETETTPVGVPNFFGQQRFGSRRPVTH 206
Query: 164 LVGATLLRGEWKSAVKMILD-PREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAI 222
VG ++RG+W+ AV L P E +AR + +ET D L + P L ER++
Sbjct: 207 EVGLEIVRGDWEGAVMAYLGAPTNAEPESTQEARRFIEETRDWQEALDRFPNRLRYERSM 266
Query: 223 LQCLKKC-----------PGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKH-GT 270
L L +C P ++ AL+ +P L+ ++VH+ QS+ +N S R+++
Sbjct: 267 LHELAECTANSDGNGDPDPADFRAALERLPSNLQRLFVHAAQSYAFNLMLSERLERGLPF 326
Query: 271 EHVVVGDLVFC---KGDDTEKEL 290
+ V GD V C GDD +EL
Sbjct: 327 DRPVAGD-VACFSDTGDDVPEEL 348
>gi|452206707|ref|YP_007486829.1| tRNA pseudouridine(13) synthase TruD [Natronomonas moolapensis
8.8.11]
gi|452082807|emb|CCQ36079.1| tRNA pseudouridine(13) synthase TruD [Natronomonas moolapensis
8.8.11]
Length = 445
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 86/274 (31%), Positives = 132/274 (48%), Gaps = 28/274 (10%)
Query: 32 LRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALN 91
L F DT + +SK LG+ +AGTKDK +V+TQ ++ K +L +++
Sbjct: 59 LVFRATLRGWDTNDFASTLSKRLGVSRERVSWAGTKDKHAVTTQLFSI-KHPDDELPSVD 117
Query: 92 KRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGV-VVDSEDVIKASANSLGRNG----- 145
G + +L G L GN F + +RG ++ D I G +G
Sbjct: 118 ----GATIEPLGRAGRPVLFGDLAGNDFEVVVRGAERPENADPIAVELGRFGADGRSADE 173
Query: 146 -------FINYFGLQRFGSGSVPTHLVGATLLRGEWKS-AVKMILDPREGERNEISKARE 197
NYFG QRFGS TH VG ++RGEW+S AV+ + + + E + AR+
Sbjct: 174 DGDGAVAVPNYFGQQRFGSMRPITHRVGLDVVRGEWESAAVRYVCESSDREPDRTRTARQ 233
Query: 198 YYKETDDIDGTLRKLPRHLVAERAILQCLKK---CPGNYLQALKAIPRTLRMMYVHSYQS 254
E + + LP L ERAI L + P +Y +AL+ +PR L+ M+ ++ QS
Sbjct: 234 RLDEEREWERANEVLPGGLRFERAIAGRLAEGADGPADYREALETLPRNLQSMFTNAAQS 293
Query: 255 FLWNHAASARVQK---HGTEHVVVGDLV-FCKGD 284
+++N S R+++ GT VGD+V F GD
Sbjct: 294 YVFNRVLSERLRRGLPFGTP--AVGDVVCFADGD 325
>gi|448337746|ref|ZP_21526820.1| tRNA pseudouridine synthase D [Natrinema pallidum DSM 3751]
gi|445624947|gb|ELY78318.1| tRNA pseudouridine synthase D [Natrinema pallidum DSM 3751]
Length = 453
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 86/291 (29%), Positives = 129/291 (44%), Gaps = 36/291 (12%)
Query: 32 LRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALN 91
L F DT + +S LGI +AGTKDK +V+TQ +V+ + L A++
Sbjct: 57 LVFRATLRGWDTNDFAARVSDALGISRERVNWAGTKDKYAVTTQLFSVYGADPADLPAID 116
Query: 92 KRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSE-----DVIKASANSLG---- 142
G+ + L G L GN F + VV D E D I G
Sbjct: 117 ----GVEIEVLGRAGRNLEFGDLAGNEFAL----VVTDPERPDNADAITTELAEFGGLET 168
Query: 143 ----------RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNE 191
G N+FG QRFGS TH VG + R +W+ AV L +P + E
Sbjct: 169 DQPDSSGTETSIGVPNFFGQQRFGSRRPVTHEVGLAIARDDWEGAVMAYLGNPTDAEPEG 228
Query: 192 ISKAREYYKETDDIDGTLRKLPRHLVAERAILQCL-----KKCPGNYLQALKAIPRTLRM 246
+AR + +ET D L ++P L ER++L L + P + AL+ +P L+
Sbjct: 229 TQEARAFVEETRDWQDALERMPHRLRYERSMLHALAEYDGEPGPEQFRAALERVPSNLQR 288
Query: 247 MYVHSYQSFLWNHAASARVQKH-GTEHVVVGDLVFCKGDDTEKELGCVNPE 296
++VH+ QS+ +N S R+++ + V GD+V DT+ G P+
Sbjct: 289 LFVHAAQSYAFNLMLSERLERGLPFDRPVEGDVVCFT--DTDAPDGLALPD 337
>gi|448344900|ref|ZP_21533801.1| tRNA pseudouridine synthase D [Natrinema altunense JCM 12890]
gi|445636450|gb|ELY89611.1| tRNA pseudouridine synthase D [Natrinema altunense JCM 12890]
Length = 453
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 86/291 (29%), Positives = 133/291 (45%), Gaps = 36/291 (12%)
Query: 32 LRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALN 91
L F DT + +S LGI +AGTKDK +V+TQ +V+ +L ++
Sbjct: 57 LVFRATLRGWDTNDFAARVSDALGISRERVNWAGTKDKYAVTTQLFSVYGADPDELPEID 116
Query: 92 KRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANS----------L 141
G+ + L G L GN F + VV + E A+A +
Sbjct: 117 ----GVEIEVLGRAGRNLEFGDLAGNEFEL----VVTEPERPDNAAAITDALCEFGGLET 168
Query: 142 GRN---------GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNE 191
GR+ G N+FG QRFGS TH VG + R +W+ AV L +P + E
Sbjct: 169 GRSDSSEDVTSIGVPNFFGQQRFGSRRPVTHKVGLAIARDDWEGAVMAYLGEPTDAEPKG 228
Query: 192 ISKAREYYKETDDIDGTLRKLPRHLVAERAILQCL-----KKCPGNYLQALKAIPRTLRM 246
+AR + +ET D L ++P L ER++L L + P Y +AL+ +P L+
Sbjct: 229 TQEARAFVEETRDWQAALERMPHRLRYERSMLHALAEHDGEPGPDQYREALERVPSNLQR 288
Query: 247 MYVHSYQSFLWNHAASARVQKH-GTEHVVVGDLVFCKGDDTEKELGCVNPE 296
++VH+ QS+ +N S R+++ + V GD+V DT+ G P+
Sbjct: 289 LFVHAAQSYAFNLMLSERLERGLPFDRPVEGDVVCFS--DTDAPDGLALPD 337
>gi|448717111|ref|ZP_21702643.1| tRNA pseudouridine synthase D [Halobiforma nitratireducens JCM
10879]
gi|445786070|gb|EMA36843.1| tRNA pseudouridine synthase D [Halobiforma nitratireducens JCM
10879]
Length = 451
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 80/262 (30%), Positives = 120/262 (45%), Gaps = 23/262 (8%)
Query: 25 PEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRA 84
P +L F DT + +S LGI +AGTKDK +V+TQ +V+
Sbjct: 50 PTDAYPYLVFRATLSGWDTNDFASRLSNALGISRERVNWAGTKDKYAVTTQLFSVYGAEP 109
Query: 85 SKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITL----RGVVVDS-EDVIKASAN 139
L ++ G L L G L GN F + + R +VD D + A A
Sbjct: 110 DDLPDVD----GANLEVVGRAGRALEFGDLAGNAFELVVSEPERPALVDEITDELAAFAG 165
Query: 140 SLGRN--------GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERN 190
+ + G N+FG QRFGS TH VG ++R +W+ AV L +P + E
Sbjct: 166 TEDADDSDGAVTVGVPNFFGQQRFGSRRPVTHEVGLEIVRDDWEGAVMAYLGNPTDAEPE 225
Query: 191 EISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPG-----NYLQALKAIPRTLR 245
AR + +ET D L + P L ER++L L +C G Y AL+ +P L+
Sbjct: 226 GTQAARTFVEETRDWQEALERFPHRLRYERSLLHELAECDGEPESDTYRAALERLPTNLQ 285
Query: 246 MMYVHSYQSFLWNHAASARVQK 267
++VH+ QS+ +N S R+++
Sbjct: 286 RLFVHAAQSYAFNLMLSERLER 307
>gi|41615082|ref|NP_963580.1| hypothetical protein NEQ293 [Nanoarchaeum equitans Kin4-M]
gi|42559716|sp|P60348.1|TRUD_NANEQ RecName: Full=Probable tRNA pseudouridine synthase D; AltName:
Full=tRNA pseudouridine(13) synthase; AltName: Full=tRNA
pseudouridylate synthase D; AltName: Full=tRNA-uridine
isomerase D
gi|40068806|gb|AAR39141.1| NEQ293 [Nanoarchaeum equitans Kin4-M]
Length = 374
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 129/255 (50%), Gaps = 23/255 (9%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G + + L K+N T +A+ +I+K + F+G KDK++++ Q ++++K +
Sbjct: 42 GDYTIYVLKKKNLSTTQAIKIIAKQFRLSKYRISFSGEKDKKAITYQLISIYKGPKKSMF 101
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
N L I L D + + LG LGN F I + + + G + F N
Sbjct: 102 LDNLELYYIGLSD-----KPVKLGSHLGNYFEIKV------------YAESPKGFDVFPN 144
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAR----EYYKETDD 204
YF +QRFG + HL+G L++ E + A K++L E + K R EY+ +
Sbjct: 145 YFDVQRFGDKRLVNHLIGKHLIKNECEEAAKILLTFVGKESKKTIKVRQLIKEYWNNIEK 204
Query: 205 IDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASAR 264
+ + +P+ L E+A LQ + +Y +A KAIP+ + M+++HSYQS+++N
Sbjct: 205 LKKVIPLMPKALDIEKAYLQSFIE-KKDYCKAFKAIPKWILMLFIHSYQSYIFNETLKMY 263
Query: 265 VQKHGTEHVVVGDLV 279
+ K+ T+ + + DL+
Sbjct: 264 L-KNKTKIIKIRDLL 277
>gi|448365855|ref|ZP_21554109.1| tRNA pseudouridine synthase D [Natrialba aegyptia DSM 13077]
gi|445654464|gb|ELZ07315.1| tRNA pseudouridine synthase D [Natrialba aegyptia DSM 13077]
Length = 480
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 88/300 (29%), Positives = 128/300 (42%), Gaps = 46/300 (15%)
Query: 32 LRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALN 91
L F DT + IS LG+ +AGTKDK +V+TQ +V+ A L +N
Sbjct: 57 LVFRATLHGWDTNDFAARISDALGVSRERINWAGTKDKYAVTTQLFSVYSTDAVDLPDIN 116
Query: 92 KRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVV--VDSEDVIK------ASANSLGR 143
L L G L GN F + + ++ D+ + + A GR
Sbjct: 117 D----AELEPLGRAGRSLEFGDLAGNAFEVVISDPAEPANATDIARELRAFGSFAGESGR 172
Query: 144 N-----------------------GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM 180
G NYFG QRFGS TH VG + RG+W+ AV
Sbjct: 173 TDDSGGGPTTDGSGATEPSDSAPIGVPNYFGQQRFGSRRPVTHEVGLEIARGDWEGAVMA 232
Query: 181 ILD-PREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKC-----PGNYL 234
L P E E AR + +ET D L + P L ER+++ L C P ++
Sbjct: 233 YLGAPTEAEPEGTQAARSFIEETRDWQQALDRFPNRLRYERSMIHELVACDGDPGPDDFR 292
Query: 235 QALKAIPRTLRMMYVHSYQSFLWNHAASARVQKH-GTEHVVVGDLVFC---KGDDTEKEL 290
AL+++P L+ ++VH+ QS+ +N R+++ + V GD+V C GDD EL
Sbjct: 293 AALESVPSNLQRLFVHAAQSYAFNLFLGERLERGLPFDRPVAGDVV-CFTDTGDDVPAEL 351
>gi|150400227|ref|YP_001323994.1| tRNA pseudouridine synthase D TruD [Methanococcus vannielii SB]
gi|189036632|sp|A6USB0.1|TRUD_METVS RecName: Full=Probable tRNA pseudouridine synthase D; AltName:
Full=tRNA pseudouridine(13) synthase; AltName: Full=tRNA
pseudouridylate synthase D; AltName: Full=tRNA-uridine
isomerase D
gi|150012930|gb|ABR55382.1| tRNA pseudouridine synthase D TruD [Methanococcus vannielii SB]
Length = 390
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 125/236 (52%), Gaps = 6/236 (2%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G F+ F L K N +T +AL I + ++FGFAGTKDK +V+TQR+ F + +L
Sbjct: 54 GSFIHFTLEKRNWNTMDALSAIVRATKTKRKNFGFAGTKDKFAVTTQRMGCFGLKKEQLE 113
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
++ ++ I + D + L +G L GNRFTI +R ++ + + + + L + +N
Sbjct: 114 SV--KIPEIIIKDIQKSNKKLRMGDLFGNRFTINIRD--IEKKYMELENLSDLKLDHVLN 169
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDDIDGT 208
YFG+QRFG TH+VG + +++SA E + +ARE ++ + G
Sbjct: 170 YFGIQRFGLKRPITHIVGKFIYERDFESAFYTYCGTPISETGDEKEARELV-DSGNFKGA 228
Query: 209 LRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASAR 264
L+ + E+ ++Q K ++ A A+P L M+V++YQ++L+N + R
Sbjct: 229 LKLFSKGNEYEKRLIQQYFKYK-DFKMAFTALPPQLNSMFVNAYQAYLFNEMVNER 283
>gi|395818896|ref|XP_003782847.1| PREDICTED: LOW QUALITY PROTEIN: pseudouridylate synthase 7 homolog
[Otolemur garnettii]
Length = 536
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 68/102 (66%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
+WP+ G + F LYKENKDT +A+ ++SK L + P F + GTKDKR+++ Q + V K
Sbjct: 223 SWPKSRGSYCHFVLYKENKDTMDAINVLSKYLRVKPNIFSYMGTKDKRAITVQEIAVLKI 282
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLR 124
A +LA LNK L+ +LG+F Y K L LG+L GN FT+ LR
Sbjct: 283 TAQRLAHLNKCLMNFKLGNFSYQKNPLKLGELQGNHFTVVLR 324
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 90/199 (45%), Gaps = 60/199 (30%)
Query: 334 DINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTG 393
D+N+ Y+I DVV+PLPG VIYP + + + Y + D +++ H ++++ S++G
Sbjct: 393 DVNN--YSIHDVVMPLPGFDVIYPKHKIRDAYREMLTADNLDIDNMRHKIRDY---SLSG 447
Query: 394 NYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDC 453
YR++ +P + WE++ Y D PL TDLD +
Sbjct: 448 AYRKIIIRPQNVSWEVVAYDDPKIPLFNTDLDNL-------------------------- 481
Query: 454 MKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATM 513
E K P V + S+GK ALK+ +LP S YATM
Sbjct: 482 ------------------------EGKPPPVFA-----SEGKYRALKMDFSLPPSTYATM 512
Query: 514 AIRELLKTSTSVAFHKTLN 532
AIRE+LK TS+ LN
Sbjct: 513 AIREVLKMDTSIKNQTQLN 531
>gi|448359745|ref|ZP_21548394.1| tRNA pseudouridine synthase D [Natrialba chahannaoensis JCM 10990]
gi|445641812|gb|ELY94884.1| tRNA pseudouridine synthase D [Natrialba chahannaoensis JCM 10990]
Length = 477
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 85/295 (28%), Positives = 130/295 (44%), Gaps = 40/295 (13%)
Query: 32 LRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALN 91
L F DT + +S LGI +AGTKDK +V+TQ +V+ + A
Sbjct: 57 LVFRATLRGWDTNDFATRLSNALGISRERVNWAGTKDKYAVTTQLFSVYDTSSGTDATEL 116
Query: 92 KRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGV--------------------VVDSE 131
+ G L L G L GN+F I + V +
Sbjct: 117 PDIDGADLEVLGRAGRSLEFGDLAGNQFEIVVSDADQPETASQIAGELYEFGGLDVAATG 176
Query: 132 DVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILD-PREGERN 190
DV + + +G N+FG QRFGS TH VG ++RG W+ AV L P + E
Sbjct: 177 DVSETESTPVG---VPNFFGQQRFGSRRPVTHEVGLEIVRGNWEGAVMAYLGAPADAEPE 233
Query: 191 EISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKC-----------PGNYLQALKA 239
+AR + +ET D L + P L ER++L L +C P ++ AL+
Sbjct: 234 STQEARRFIEETRDWQEALNRFPNRLRYERSMLHELAECTANGDGSSEPDPADFRAALER 293
Query: 240 IPRTLRMMYVHSYQSFLWNHAASARVQKH-GTEHVVVGDLVFC---KGDDTEKEL 290
+P L+ ++VH+ QS+ +N S R+++ + + GD+V C G+D +EL
Sbjct: 294 MPSNLQRLFVHAAQSYAFNLMLSERLERGLPFDRPIAGDVV-CFADTGNDVPEEL 347
>gi|340623848|ref|YP_004742301.1| tRNA pseudouridine synthase D TruD [Methanococcus maripaludis X1]
gi|339904116|gb|AEK19558.1| tRNA pseudouridine synthase D TruD [Methanococcus maripaludis X1]
Length = 430
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 131/248 (52%), Gaps = 8/248 (3%)
Query: 20 GSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTV 79
G E+ + G F+ F + K N +T +AL I + ++FGFAGTKDK +V+TQR
Sbjct: 85 GFEDVEKWHGSFIHFTVEKTNWNTMDALKQIVRATKTKRKNFGFAGTKDKFAVTTQRFGC 144
Query: 80 FKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASAN 139
F + +L +N + I IR D + L +G L GN+FTI +R + + SED IK ++
Sbjct: 145 FGLKKEQLENINIKDIVIR--DVQKTNKKLRMGGLWGNKFTIKIRDLNL-SEDEIKRISD 201
Query: 140 SLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYY 199
L + +NY+G+QRFG TH+VG + +++SA E + +AR+
Sbjct: 202 -LKLDYVLNYYGIQRFGLIRPITHIVGKFIYERDFESAFYTYCGTPINETGDSLEARQLV 260
Query: 200 KETDDIDGTLRKLPR-HLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWN 258
+ + L+ R H +R I Q LK ++ A A+P L M+V++YQ++L+N
Sbjct: 261 -DMGEFKKALKLFNRGHDYEKRLIQQYLK--FKDFKMAFTALPPQLNSMFVNAYQAYLFN 317
Query: 259 HAASARVQ 266
+ R +
Sbjct: 318 EMINKRFE 325
>gi|76803242|ref|YP_331337.1| tRNA pseudouridine synthase D [Natronomonas pharaonis DSM 2160]
gi|91208117|sp|Q3IMF3.1|TRUD_NATPD RecName: Full=Probable tRNA pseudouridine synthase D; AltName:
Full=tRNA pseudouridine(13) synthase; AltName: Full=tRNA
pseudouridylate synthase D; AltName: Full=tRNA-uridine
isomerase D
gi|76559107|emb|CAI50705.1| tRNA pseudouridine(13) synthase TruD [Natronomonas pharaonis DSM
2160]
Length = 435
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 85/263 (32%), Positives = 125/263 (47%), Gaps = 18/263 (6%)
Query: 32 LRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALN 91
L F DT + +S LG+ +AGTKDK +V+TQ +F R A +
Sbjct: 59 LVFRATLREWDTNDFASAVSNALGVSRERVSWAGTKDKHAVTTQ---LFSVRHDDAALPD 115
Query: 92 KRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSL-----GRNGF 146
L G + +L G L GN F + +R D + +A+A L G G
Sbjct: 116 --LDGADIEPIGRAGRPVLFGDLAGNEFELVIRDP--DRPEHAEATAAELCDFGGGEAGV 171
Query: 147 INYFGLQRFGSGSVPTHLVGATLLRGEWK-SAVKMILDPREGERNEISKAREYYKETDDI 205
NYFG QRFGS TH VG +L G+W+ +AV+ + + E E + RE D
Sbjct: 172 PNYFGTQRFGSRRPITHRVGLDVLDGDWEAAAVRYVCESSEREPERTQEVREGIDADRDW 231
Query: 206 DGTLRKLPRHLVAERAILQCL---KKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAAS 262
+LP L ERAI L + P +Y AL+ +P L+ M+V++ QS+++N S
Sbjct: 232 AAAGERLPGSLRFERAIANRLAEGAESPDDYRAALEELPSNLQRMFVNAAQSYVFNRILS 291
Query: 263 ARVQKH-GTEHVVVGDLVFCKGD 284
R+++ + VVGD+V C D
Sbjct: 292 ERLRRGLPFDEPVVGDVV-CFSD 313
>gi|448343707|ref|ZP_21532628.1| tRNA pseudouridine synthase D [Natrinema gari JCM 14663]
gi|445622623|gb|ELY76074.1| tRNA pseudouridine synthase D [Natrinema gari JCM 14663]
Length = 459
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 85/293 (29%), Positives = 133/293 (45%), Gaps = 34/293 (11%)
Query: 32 LRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALN 91
L F DT + +S LGI +AGTKDK +V+TQ +V+ +L ++
Sbjct: 57 LVFRATLRGWDTNDFAARLSDALGISRERVNWAGTKDKYAVTTQLFSVYGADPDELPEID 116
Query: 92 KRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGV------------------VVDSEDV 133
G+ + L G L GN F + + G + DS+
Sbjct: 117 ----GVEIEVLGRAGRNLEFGDLAGNEFELVVTGPERPDNAAAITDALCEFGGLGDSQRR 172
Query: 134 IKASANSLGRN---GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGER 189
++A S G G N+FG QRFGS TH VG + R +W+ AV L +P + E
Sbjct: 173 GGSAAASSGTETSIGVPNFFGQQRFGSRRPVTHTVGLAIARDDWEGAVLAYLGEPTDAEP 232
Query: 190 NEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKC-----PGNYLQALKAIPRTL 244
+AR + +ET D L ++P L ER++L L +C P + AL+ +P L
Sbjct: 233 AGTQEARAFIEETRDWQEALERVPHRLRYERSMLHALAECDGEPGPEEFRAALERVPSNL 292
Query: 245 RMMYVHSYQSFLWNHAASARVQKH-GTEHVVVGDLVFCKGDDTEKELGCVNPE 296
+ ++VH+ QS+ +N S R+++ + V GD+V DT+ G P+
Sbjct: 293 QRLFVHAAQSYAFNLMLSERLERGLPFDRPVEGDVVCFS--DTDAPDGLALPD 343
>gi|221052493|ref|XP_002257822.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
knowlesi strain H]
gi|193807653|emb|CAQ38158.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
knowlesi strain H]
Length = 896
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 94/172 (54%), Gaps = 9/172 (5%)
Query: 20 GSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTV 79
G N E+ +++ F LYK NKDTQEA+ ISK I + F +AG KDKRSVSTQ ++
Sbjct: 159 GESNSQEEKNEWISFILYKVNKDTQEAIREISKSTNIPIKDFYYAGFKDKRSVSTQIIST 218
Query: 80 FKQRASKLAAL-------NKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSED 132
K+ + +KR+ I++ V + + LG GNRF + LR V ED
Sbjct: 219 RMMHIDKIRNMMRNGQSNDKRMKNIQICSLEKVHKKIELGAHSGNRFVVVLRN-VQRHED 277
Query: 133 VIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDP 184
++ + ++GFINYFG+QRFG T G L+R ++K + +LDP
Sbjct: 278 YLRHKLEQIKKHGFINYFGMQRFGVYK-NTFNKGKALIRRDYKEYIGHVLDP 328
>gi|389581959|dbj|GAB64680.1| hypothetical protein PCYB_022500, partial [Plasmodium cynomolgi
strain B]
Length = 863
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 96/172 (55%), Gaps = 9/172 (5%)
Query: 20 GSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTV 79
G N E+ +++ F LYK NKDTQEA+ ISK I + F +AG KDKRSVSTQ ++
Sbjct: 121 GESNSTEEKNEWINFILYKVNKDTQEAIREISKSTNIPIKDFYYAGFKDKRSVSTQIIST 180
Query: 80 FKQRASKLAAL-------NKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSED 132
K++ + +K++ I++ V++ + LG GNRF + LR V ED
Sbjct: 181 RMMHIHKISNMMRSGISNHKKMKKIQIYGLEKVQKKIELGAHSGNRFVVVLRNVQT-HED 239
Query: 133 VIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDP 184
++ + ++GFINYFG+QRFG T G L+R ++K + +LDP
Sbjct: 240 YLRHKLEQIKKHGFINYFGMQRFGVYK-NTFNKGKALIRRDYKEYIGHVLDP 290
>gi|448725273|ref|ZP_21707741.1| tRNA pseudouridine synthase D [Halococcus morrhuae DSM 1307]
gi|445799376|gb|EMA49756.1| tRNA pseudouridine synthase D [Halococcus morrhuae DSM 1307]
Length = 460
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 130/293 (44%), Gaps = 31/293 (10%)
Query: 32 LRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALN 91
L F EN DT + +S L + +AGTKDKR+VSTQ +F RA A +
Sbjct: 57 LVFRATLENWDTNDFASALSSRLEMSRERIDWAGTKDKRAVSTQ---LFSVRAGSDALDD 113
Query: 92 KRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNG------ 145
L G + GL G L GN F I +R +S I S S NG
Sbjct: 114 IDLRGATIDLVGRAGRGLRFGDLAGNAFEIVVREADTESIQRITESLRSFAGNGDENADG 173
Query: 146 ----------FINYFGLQRFGSGSVPTHLVGATLLRGEWKSAV-KMILDPREGERNEISK 194
NYFG QRFGS TH VG ++R +W+ AV + P E E +
Sbjct: 174 ASGENGATVGVPNYFGQQRFGSYRPVTHEVGLAVVRDDWREAVLAYVGRPHESEPEATRE 233
Query: 195 AREYYKE------TDDIDGTLRKLPRHLVAERAILQCLKKCPG----NYLQALKAIPRTL 244
AR + T D L + PR L ER++L L + G ++ AL+ +P L
Sbjct: 234 ARAFVDSEATAAGTADWAAALDRYPRQLGFERSMLHRLVENGGESSDDFRAALETVPSNL 293
Query: 245 RMMYVHSYQSFLWNHAASARVQKH-GTEHVVVGDLVFCKGDDTEKELGCVNPE 296
+ ++V++ QS+L+N SAR+ + + + GD+V + L +P+
Sbjct: 294 QRLFVNAAQSYLYNRILSARLDRGLPFDRAIAGDVVCFADSEAPDGLALPDPD 346
>gi|374724493|gb|EHR76573.1| tRNA pseudouridine synthase D [uncultured marine group II
euryarchaeote]
Length = 473
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 88/267 (32%), Positives = 128/267 (47%), Gaps = 20/267 (7%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+F + N +T ++K L I FAGTKDKR+V TQ++ V K+A
Sbjct: 56 GRFTVAKITLTNWETNRFCNNLAKALKIPRNRIFFAGTKDKRAV-TQQLFVIDAPQRKVA 114
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVD------SEDVIKA------ 136
+ + I + + K G G GNRFTI +RG D SED +K
Sbjct: 115 EIEMPDVEIEVLGRTHQKIGF--GNHRGNRFTIVVRGCAHDDGTPMSSEDALKEVERIQA 172
Query: 137 -SANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG--ERNEIS 193
A LG N F N+ G QRFGSG T VG ++ EW+ AV M EG E +++
Sbjct: 173 EMAEKLGENTFPNWIGPQRFGSGRPVTAEVGKHVIAEEWEKAV-MTYIAMEGAAENDDVH 231
Query: 194 KAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQ 253
R + + + L P+ L ER +++ L K +++ A K +P L++M VH+ Q
Sbjct: 232 AFRAHVRANGPTEEGLALAPQWLGFERRMVEHLLKREDDFVGAFKKLPGNLQLMTVHALQ 291
Query: 254 SFLWNHAASARVQKH-GTEHVVVGDLV 279
S ++N A AR++ V GDLV
Sbjct: 292 SVVFNKALHARIEAGLPISRPVAGDLV 318
>gi|45358178|ref|NP_987735.1| hypothetical protein MMP0615 [Methanococcus maripaludis S2]
gi|44920935|emb|CAF30171.1| Conserved hypothetical protein [Methanococcus maripaludis S2]
Length = 430
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 128/247 (51%), Gaps = 8/247 (3%)
Query: 20 GSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTV 79
G E+ + G F+ F + K N +T +AL I + ++FGFAGTKDK +V+TQR
Sbjct: 85 GFEDVEKWHGSFIHFTVEKTNWNTMDALKQIVRATKTKRKNFGFAGTKDKFAVTTQRFGC 144
Query: 80 FKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASAN 139
F + +L +N + I IR D + L +G L GN+FTI +R + + +++ + S
Sbjct: 145 FGLKKEQLENINIKDIVIR--DVQKTNKKLRMGGLWGNKFTIKIRDLNLSEKEIKRIS-- 200
Query: 140 SLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYY 199
L + +NY+G+QRFG TH+VG + +++SA E + +AR+
Sbjct: 201 DLKLDYVLNYYGIQRFGLIRPITHIVGKFIYERDFESAFYTYCGTPINETGDSLEARQLV 260
Query: 200 KETDDIDGTLRKLPR-HLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWN 258
+ + L+ R H +R I Q LK ++ A A+P L M+V++YQ++L+N
Sbjct: 261 -DMGEFKKALKLFNRGHDYEKRLIQQYLK--YKDFKMAFTALPPQLNSMFVNAYQAYLFN 317
Query: 259 HAASARV 265
+ R
Sbjct: 318 EMINKRF 324
>gi|448305257|ref|ZP_21495189.1| tRNA pseudouridine synthase D [Natronorubrum sulfidifaciens JCM
14089]
gi|445589104|gb|ELY43340.1| tRNA pseudouridine synthase D [Natronorubrum sulfidifaciens JCM
14089]
Length = 449
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/253 (30%), Positives = 118/253 (46%), Gaps = 21/253 (8%)
Query: 32 LRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALN 91
L F + DT + +S LGI +AGTKDK +V+TQ +V+ L ++
Sbjct: 57 LVFRVTLSGWDTNDFASRLSDALGISRERVDWAGTKDKYAVTTQLFSVYGADPDDLPDVD 116
Query: 92 KRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLR-----GVVVDSEDVIKA-----SANSL 141
I I L G L GN F + + V D + A A++
Sbjct: 117 GAEIDI----LGRAGRSLEFGDLAGNAFELVVSDPDQPANVAQITDELHAFGGLEDADTE 172
Query: 142 GRN-GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYY 199
G G N+FG QRFGS TH VG + RG+W+ AV L +P + E AR +
Sbjct: 173 GTVVGVPNFFGQQRFGSRRPVTHKVGLEIARGDWEGAVMAYLGNPTDAEPEGTQDARAFV 232
Query: 200 KETDDIDGTLRKLPRHLVAERAILQCLKKC-----PGNYLQALKAIPRTLRMMYVHSYQS 254
+ET D L + P L ER++L + +C P ++ AL+ +P L+ ++VH+ QS
Sbjct: 233 QETRDWQEALERFPNRLRYERSMLHGITECDGEPGPEDFRAALERVPSNLQRLFVHAAQS 292
Query: 255 FLWNHAASARVQK 267
+ +N S R+++
Sbjct: 293 YAFNLMLSKRLER 305
>gi|448306311|ref|ZP_21496219.1| tRNA pseudouridine synthase D [Natronorubrum bangense JCM 10635]
gi|445598370|gb|ELY52429.1| tRNA pseudouridine synthase D [Natronorubrum bangense JCM 10635]
Length = 449
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 116/253 (45%), Gaps = 21/253 (8%)
Query: 32 LRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALN 91
L F + DT + +S LGI +AGTKDK +V+TQ +V+ + L +N
Sbjct: 57 LVFRVTLSGWDTNDFASRLSDALGISRERVNWAGTKDKYAVTTQLFSVYGADPADLPDVN 116
Query: 92 KRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLR-----GVVVDSEDVIKASANSLGRN-- 144
I + L G L GN F + + V D + A +
Sbjct: 117 GAEIDV----LGRAGRSLEFGDLAGNAFELVVSDPAQPANVAQITDELHAFGGLEDEDTE 172
Query: 145 ----GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYY 199
G N+FG QRFGS TH VG + RG+W+ AV L +P + E AR +
Sbjct: 173 GTVVGVPNFFGQQRFGSRRPVTHKVGLEIARGDWEGAVMAYLGNPTDAEPEGTQDARAFV 232
Query: 200 KETDDIDGTLRKLPRHLVAERAILQCLKKC-----PGNYLQALKAIPRTLRMMYVHSYQS 254
+ET D L + P L ER++L + +C P ++ AL+ +P L+ ++VH+ QS
Sbjct: 233 QETRDWQEALERFPNRLRYERSMLHGITECDGEPGPEDFRAALERVPSNLQRLFVHAAQS 292
Query: 255 FLWNHAASARVQK 267
+ +N S R+++
Sbjct: 293 YAFNLMLSKRLER 305
>gi|397774922|ref|YP_006542468.1| tRNA pseudouridine synthase D TruD [Natrinema sp. J7-2]
gi|397684015|gb|AFO58392.1| tRNA pseudouridine synthase D TruD [Natrinema sp. J7-2]
Length = 459
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 85/293 (29%), Positives = 132/293 (45%), Gaps = 34/293 (11%)
Query: 32 LRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALN 91
L F DT + +S LGI +AGTKDK +V+TQ +V+ +L ++
Sbjct: 57 LVFRATLRGWDTNDFAARLSDALGISRERVNWAGTKDKYAVTTQLFSVYGADPDELPEID 116
Query: 92 KRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLR------------------GVVVDSEDV 133
G+ + L G L GN F + + G + DS+
Sbjct: 117 ----GVEIEVLGRAGRNLEFGDLAGNEFELVVTSPERPDNAAAITDALCEFGGLGDSQRR 172
Query: 134 IKASANSLGRN---GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGER 189
+A S G G N+FG QRFGS TH VG + R +W+ AV L +P + E
Sbjct: 173 GGGAAASSGTETSIGVPNFFGQQRFGSRRPVTHKVGLAIARDDWEGAVLAYLGEPTDAEP 232
Query: 190 NEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKC-----PGNYLQALKAIPRTL 244
+AR + +ET D L ++P L ER++L L +C P + AL+ +P L
Sbjct: 233 AGTQEARAFIEETRDWQEALERVPHRLRYERSMLHALAECDGEPGPEEFRAALERVPSNL 292
Query: 245 RMMYVHSYQSFLWNHAASARVQKH-GTEHVVVGDLVFCKGDDTEKELGCVNPE 296
+ ++VH+ QS+ +N S R+++ + V GD+V DT+ G P+
Sbjct: 293 QRLFVHAAQSYAFNLMLSERLERGLPFDRPVEGDVVCFS--DTDAPDGLALPD 343
>gi|62901433|sp|Q6LZL0.2|TRUD2_METMP RecName: Full=Probable tRNA pseudouridine synthase D 2; AltName:
Full=tRNA pseudouridine(13) synthase; AltName: Full=tRNA
pseudouridylate synthase D 2; AltName: Full=tRNA-uridine
isomerase D 2
Length = 390
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 128/247 (51%), Gaps = 8/247 (3%)
Query: 20 GSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTV 79
G E+ + G F+ F + K N +T +AL I + ++FGFAGTKDK +V+TQR
Sbjct: 45 GFEDVEKWHGSFIHFTVEKTNWNTMDALKQIVRATKTKRKNFGFAGTKDKFAVTTQRFGC 104
Query: 80 FKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASAN 139
F + +L +N + I IR D + L +G L GN+FTI +R + + +++ + S
Sbjct: 105 FGLKKEQLENINIKDIVIR--DVQKTNKKLRMGGLWGNKFTIKIRDLNLSEKEIKRIS-- 160
Query: 140 SLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYY 199
L + +NY+G+QRFG TH+VG + +++SA E + +AR+
Sbjct: 161 DLKLDYVLNYYGIQRFGLIRPITHIVGKFIYERDFESAFYTYCGTPINETGDSLEARQLV 220
Query: 200 KETDDIDGTLRKLPR-HLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWN 258
+ + L+ R H +R I Q LK ++ A A+P L M+V++YQ++L+N
Sbjct: 221 -DMGEFKKALKLFNRGHDYEKRLIQQYLKY--KDFKMAFTALPPQLNSMFVNAYQAYLFN 277
Query: 259 HAASARV 265
+ R
Sbjct: 278 EMINKRF 284
>gi|253700071|ref|YP_003021260.1| tRNA pseudouridine synthase D TruD [Geobacter sp. M21]
gi|259550564|sp|C6E4K4.1|TRUD_GEOSM RecName: Full=tRNA pseudouridine synthase D; AltName: Full=tRNA
pseudouridine(13) synthase; AltName: Full=tRNA
pseudouridylate synthase D; AltName: Full=tRNA-uridine
isomerase D
gi|251774921|gb|ACT17502.1| tRNA pseudouridine synthase D TruD [Geobacter sp. M21]
Length = 398
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 124/246 (50%), Gaps = 7/246 (2%)
Query: 36 LYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLI 95
L K T EAL ++K LG+ R G+AG KD ++ Q +++ + K+ AL +
Sbjct: 44 LEKRGIATLEALRRLAKALGVQERDLGYAGMKDAIGITRQTISIPRVAPEKVLALE--IP 101
Query: 96 GIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQRF 155
GI + L LG L GNRF I +R V + +A+ + R G N FG+QR+
Sbjct: 102 GITVLSASMHGNKLRLGHLKGNRFVIRVRDVAQGAAGNAEAALEIMTRRGVPNRFGVQRY 161
Query: 156 GSGSVPTHLVGATLLRGEWKSAV-KMILDPREGERNEISKAREYYKETDDIDGTLRKLPR 214
G+ TH +GA +LR E+KSAV ++I DP A E Y+ ++ +L P
Sbjct: 162 GAQG-NTHEIGAAMLRREFKSAVDRLIGDPAAVTDERWRLAIEAYRR-GEVAESLALFPG 219
Query: 215 HLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVV 274
H ER +L L + P + +A ++ ++ +Y+ ++QS L++ R+ + V
Sbjct: 220 HFRVERELLTRLVQRPDGFERAFNSVQPRMKRLYLSAFQSSLFDLVLGKRLDSF--DQVN 277
Query: 275 VGDLVF 280
VGD+ F
Sbjct: 278 VGDIAF 283
>gi|16554460|ref|NP_444184.1| tRNA pseudouridine synthase D [Halobacterium sp. NRC-1]
gi|169235247|ref|YP_001688447.1| tRNA pseudouridine synthase D [Halobacterium salinarum R1]
gi|47606793|sp|Q9HSG5.2|TRUD_HALSA RecName: Full=Probable tRNA pseudouridine synthase D; AltName:
Full=tRNA pseudouridine(13) synthase; AltName: Full=tRNA
pseudouridylate synthase D; AltName: Full=tRNA-uridine
isomerase D
gi|226708691|sp|B0R2Y4.1|TRUD_HALS3 RecName: Full=Probable tRNA pseudouridine synthase D; AltName:
Full=tRNA pseudouridine(13) synthase; AltName: Full=tRNA
pseudouridylate synthase D; AltName: Full=tRNA-uridine
isomerase D
gi|167726313|emb|CAP13094.1| tRNA pseudouridine(13) synthase TruD [Halobacterium salinarum R1]
Length = 434
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 117/244 (47%), Gaps = 10/244 (4%)
Query: 42 DTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGD 101
DT + ++ +G+ +AGTKD+ +V+TQ V A+++ + I +
Sbjct: 67 DTNDFARELANTVGMSRERVRWAGTKDRHAVTTQLFAVRDLDAAQVPEIRNADIEV---- 122
Query: 102 FCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSL---GRNGFINYFGLQRFGSG 158
GL G L GN F I +R A + G G NYFG QRFGS
Sbjct: 123 VGRAGRGLEFGDLAGNAFEIVVRDPDAPERAAAVADELAAFGGGTVGTPNYFGQQRFGSK 182
Query: 159 SVPTHLVGATLLRGEWKSAVKMILD-PREGERNEISKAREYYKETDDIDGTLRKLPRHLV 217
TH VG +LR +W++A L P E E + +AREY ET D G L + P+ L
Sbjct: 183 RPVTHEVGLAILRDDWEAAAMAYLGAPTEHEPADSQRAREYVAETRDWTGALAEFPQRLR 242
Query: 218 AERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKH-GTEHVVVG 276
ER +L L G++ A++ P L+ ++VH+ QS+++N S R+ + V G
Sbjct: 243 YERTMLHELADG-GSFRDAVETFPSNLQQLFVHAAQSYVFNRIVSERMARGLPFGEPVAG 301
Query: 277 DLVF 280
D+V+
Sbjct: 302 DVVW 305
>gi|448319115|ref|ZP_21508621.1| tRNA pseudouridine synthase D [Natronococcus jeotgali DSM 18795]
gi|445596729|gb|ELY50813.1| tRNA pseudouridine synthase D [Natronococcus jeotgali DSM 18795]
Length = 455
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 86/285 (30%), Positives = 123/285 (43%), Gaps = 37/285 (12%)
Query: 32 LRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALN 91
L F DT + +S LGI +AGTKDK +V+TQ +V+ L ++
Sbjct: 57 LVFRATLRGWDTNDFASRVSDALGISRERVNWAGTKDKYAVTTQLFSVYGAEPEDLPDVD 116
Query: 92 KRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASA--------NSLGR 143
G L L G L GN F I VV D E A L R
Sbjct: 117 ----GADLEVLGRAGRNLEFGDLAGNAFEI----VVGDPERPANAETITDELREFGGLER 168
Query: 144 N-------------GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGER 189
G N+FG QRFGS TH VG ++R W+ AV L +P + E
Sbjct: 169 QRGEDGADGSGTPIGVPNFFGQQRFGSRRPVTHKVGLEIVRENWEGAVMAYLGNPTDAEP 228
Query: 190 NEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKC-----PGNYLQALKAIPRTL 244
+AR + +ET D L ++P L ER++ L +C P + AL+ +P L
Sbjct: 229 EGTQEARAFVEETRDWQAALERIPNRLRYERSMCHALAECDGEPGPEEFRTALERVPSNL 288
Query: 245 RMMYVHSYQSFLWNHAASARVQKH-GTEHVVVGDLV-FCKGDDTE 287
+ ++VH+ QS+ +N S R+++ + V GD+V F D E
Sbjct: 289 QRLFVHAAQSYAFNRTLSERLERGLPFDRPVAGDVVCFSDADAPE 333
>gi|448363262|ref|ZP_21551863.1| tRNA pseudouridine synthase D [Natrialba asiatica DSM 12278]
gi|445646461|gb|ELY99447.1| tRNA pseudouridine synthase D [Natrialba asiatica DSM 12278]
Length = 478
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 88/307 (28%), Positives = 125/307 (40%), Gaps = 59/307 (19%)
Query: 32 LRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALN 91
L F DT + IS LG+ +AGTKDK +V+TQ +V+ A L +N
Sbjct: 57 LVFRATLHGWDTNDFAARISDALGVSRERINWAGTKDKYAVTTQLFSVYSTDAVDLPDIN 116
Query: 92 KRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRN------- 144
L L G L GN F + + S+ A+A + R
Sbjct: 117 D----AELEPLGRAGRSLEFGDLAGNAFEVVI------SDPAEPANATDIARELRAFGSF 166
Query: 145 -------------------------------GFINYFGLQRFGSGSVPTHLVGATLLRGE 173
G NYFG QRFGS TH VG + R
Sbjct: 167 DGESGRTDGDSDGEPTTDGSVATEPSDSAPIGVPNYFGQQRFGSRRPVTHEVGLEIARDN 226
Query: 174 WKSAVKMILD-PREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKC--- 229
W+ AV L P E E + AR + +ET D L + P L ER++L L C
Sbjct: 227 WEGAVMAYLGAPTEAEPDGTQAARTFIEETRDWQQALDRFPNRLRYERSMLHELAACDGD 286
Query: 230 --PGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKH-GTEHVVVGDLVFC---KG 283
P ++ AL+++P L+ ++VH+ QS+ +N R+++ + V GD+V C G
Sbjct: 287 PGPDDFRAALESVPSNLQRLFVHAAQSYAFNLLLGERLERGLPFDRPVAGDVV-CFTDTG 345
Query: 284 DDTEKEL 290
DD EL
Sbjct: 346 DDVPAEL 352
>gi|10579883|gb|AAG18841.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
Length = 575
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 117/244 (47%), Gaps = 10/244 (4%)
Query: 42 DTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGD 101
DT + ++ +G+ +AGTKD+ +V+TQ V A+++ + I +
Sbjct: 208 DTNDFARELANTVGMSRERVRWAGTKDRHAVTTQLFAVRDLDAAQVPEIRNADIEV---- 263
Query: 102 FCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSL---GRNGFINYFGLQRFGSG 158
GL G L GN F I +R A + G G NYFG QRFGS
Sbjct: 264 VGRAGRGLEFGDLAGNAFEIVVRDPDAPERAAAVADELAAFGGGTVGTPNYFGQQRFGSK 323
Query: 159 SVPTHLVGATLLRGEWKSAVKMILD-PREGERNEISKAREYYKETDDIDGTLRKLPRHLV 217
TH VG +LR +W++A L P E E + +AREY ET D G L + P+ L
Sbjct: 324 RPVTHEVGLAILRDDWEAAAMAYLGAPTEHEPADSQRAREYVAETRDWTGALAEFPQRLR 383
Query: 218 AERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKH-GTEHVVVG 276
ER +L L G++ A++ P L+ ++VH+ QS+++N S R+ + V G
Sbjct: 384 YERTMLHELADG-GSFRDAVETFPSNLQQLFVHAAQSYVFNRIVSERMARGLPFGEPVAG 442
Query: 277 DLVF 280
D+V+
Sbjct: 443 DVVW 446
>gi|288559455|ref|YP_003422941.1| tRNA pseudouridine synthase D TruD [Methanobrevibacter ruminantium
M1]
gi|288542165|gb|ADC46049.1| tRNA pseudouridine synthase D TruD [Methanobrevibacter ruminantium
M1]
Length = 452
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 90/304 (29%), Positives = 143/304 (47%), Gaps = 48/304 (15%)
Query: 25 PEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRA 84
P+ G + + K + T + L I++ L I + GFAG KDK++++ Q + + +
Sbjct: 35 PDGEGPNIYIWIEKLGRTTLDVLLDIARDLHIDRKRMGFAGMKDKKAITRQWICIANMDS 94
Query: 85 SKLAALNKRLIG-IRLGDFCYVKEG---LLLGQLLGNRFTITLR---GVVVDSEDVIK-- 135
+ A + L G I +F V G L +GQL GN+F I ++ G+ D+E+ K
Sbjct: 95 EEQFAQVEALAGTIHNTEFLKVIRGRKKLRMGQLKGNKFRILVKDIDGMESDNEETRKLA 154
Query: 136 ---------ASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAV-KMILDPR 185
A +L + G NYFG QRFG THLVG L+ + K AV + I +P
Sbjct: 155 IEDAAKRADAILKTLEKTGVPNYFGWQRFGKPRTNTHLVGEALIHNDLKEAVRRYIGNPS 214
Query: 186 EGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKK----------------- 228
E E + KAR+ + + + + +L + + E+ +L+ L K
Sbjct: 215 EEESEDSRKARQAF-DDGNWEESLELMHPGMRYEKMMLKVLLKEKRRAIRKIAEEEGIEI 273
Query: 229 ----------CPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDL 278
Y A+ A+P+ L+ M+VH+YQSFL+N A S RV G + + GD+
Sbjct: 274 EEVDESKVELSDKAYKNAIHALPKPLQRMFVHAYQSFLFNAAVSERVA-MGMDKYIEGDI 332
Query: 279 VFCK 282
V K
Sbjct: 333 VIDK 336
>gi|433592155|ref|YP_007281651.1| tRNA pseudouridine synthase, TruD family [Natrinema pellirubrum DSM
15624]
gi|448333502|ref|ZP_21522694.1| tRNA pseudouridine synthase D [Natrinema pellirubrum DSM 15624]
gi|433306935|gb|AGB32747.1| tRNA pseudouridine synthase, TruD family [Natrinema pellirubrum DSM
15624]
gi|445622290|gb|ELY75750.1| tRNA pseudouridine synthase D [Natrinema pellirubrum DSM 15624]
Length = 458
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 83/292 (28%), Positives = 129/292 (44%), Gaps = 33/292 (11%)
Query: 32 LRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALN 91
L F DT + +S LGI +AGTKDK +V+TQ +V+ +L ++
Sbjct: 57 LVFRATLRGWDTNDFAARVSDALGISRERVNWAGTKDKYAVTTQLFSVYGADPEELPEID 116
Query: 92 KRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVV-VDSEDVIKASANSLG-------- 142
G+ + L G L GN F + + V D+ D I + G
Sbjct: 117 ----GVEIEVLGRAGRNLEFGDLAGNAFELRVTDPVRPDNADAITDELRAFGGLADEHRS 172
Query: 143 -----------RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERN 190
G N+FG QRFGS TH VG + R +W+ AV L +P + E
Sbjct: 173 DGADGSSDDATSIGVPNFFGQQRFGSRRPVTHKVGLAIARDDWEGAVMAYLGNPTDAEPA 232
Query: 191 EISKAREYYKETDDIDGTLRKLPRHLVAERAILQCL-----KKCPGNYLQALKAIPRTLR 245
+AR + ET D L ++P L ER+++ L + P Y +AL+ +P L+
Sbjct: 233 GTQEARAFVAETRDWQEALERVPHRLRYERSMIHALAEHDGEPGPDQYREALERVPSNLQ 292
Query: 246 MMYVHSYQSFLWNHAASARVQKH-GTEHVVVGDLVFCKGDDTEKELGCVNPE 296
++VH+ QS+ +N S R+++ + V GD+V DT+ G P+
Sbjct: 293 RLFVHAAQSYAFNLMLSERLERGLPFDRPVEGDVVCFS--DTDAPDGLALPD 342
>gi|15606802|ref|NP_214182.1| tRNA pseudouridine synthase D [Aquifex aeolicus VF5]
gi|37087906|sp|O67616.1|TRUD_AQUAE RecName: Full=tRNA pseudouridine synthase D; AltName: Full=tRNA
pseudouridine(13) synthase; AltName: Full=tRNA
pseudouridylate synthase D; AltName: Full=tRNA-uridine
isomerase D
gi|2984044|gb|AAC07586.1| hypothetical protein aq_1723 [Aquifex aeolicus VF5]
Length = 385
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 127/267 (47%), Gaps = 15/267 (5%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G++ F L K++ T +A+ IS GI ++ GFAG KDK++V+ Q ++V K+
Sbjct: 26 GQYAYFLLKKKDMTTLDAVRHISHRFGIPLKNIGFAGLKDKKAVTEQYISVKDLNEEKIR 85
Query: 89 ALN-KRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFI 147
++ R + L + +GL LG++ GN F + +RGV V + G
Sbjct: 86 KMDGYRTENLELKFLGFSDKGLELGEIEGNYFEVVVRGVTKYHRRVFPRMKELVENYGCE 145
Query: 148 NYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDDIDG 207
NYFG QRFGS + LLR E++ A+K L +R + R K D D
Sbjct: 146 NYFGEQRFGSVKHAEEFIVKYLLRHEYEEAMKEYLTSLGDKRLK----RLLRKAWRDWDR 201
Query: 208 TLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQK 267
L +P+ E +++ L++ ++ A +P+ +R+M+V +YQS+LWN
Sbjct: 202 FLSLMPKGAKPELEVVKALRRGE-SFKNAFMVLPKNIRLMFVFAYQSYLWNRYLYT---- 256
Query: 268 HGTEHVVVGDLVFCKGDDTEKELGCVN 294
VV L +CK + EL N
Sbjct: 257 -----FVVRYLKYCKTPFLKWELAFFN 278
>gi|448397677|ref|ZP_21569710.1| tRNA pseudouridine synthase D [Haloterrigena limicola JCM 13563]
gi|445672776|gb|ELZ25347.1| tRNA pseudouridine synthase D [Haloterrigena limicola JCM 13563]
Length = 453
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 81/291 (27%), Positives = 130/291 (44%), Gaps = 34/291 (11%)
Query: 32 LRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALN 91
L F + DT + +S LGI +AGTKDK +V+TQ +V+ + ++
Sbjct: 57 LVFRATLQGWDTNDFASRLSDALGISRERVNWAGTKDKYAVTTQLFSVYGADPEDIPEID 116
Query: 92 KRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGF----- 146
I + L G L GN F + VV + + A+A + G + F
Sbjct: 117 GAEIEV----LGRAGRNLEFGDLAGNAFEL----VVSEPDRPDNAAAITDGLHDFGGLEG 168
Query: 147 --------------INYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNE 191
N+FG QRFGS TH VG + RG+W+ AV L +P + E
Sbjct: 169 QRSDNSSDTTSIGVPNFFGQQRFGSRRPVTHEVGLAIARGDWEGAVMAYLGNPTDAEPES 228
Query: 192 ISKAREYYKETDDIDGTLRKLPRHLVAERAILQCL-----KKCPGNYLQALKAIPRTLRM 246
+AR + +ET D L ++P L ER+++ L + P + AL+ +P L+
Sbjct: 229 TQEARAFIEETRDWQEALERVPNRLRYERSMIHALAEHDGEPGPAQFRAALERVPSNLQR 288
Query: 247 MYVHSYQSFLWNHAASARVQKH-GTEHVVVGDLVFCKGDDTEKELGCVNPE 296
++VH+ QS+ +N S R+++ + V GD+V D L +P+
Sbjct: 289 LFVHAAQSYAFNLMLSERLERDLPFDRPVDGDVVCFSDTDAPDGLELPDPD 339
>gi|150403553|ref|YP_001330847.1| tRNA pseudouridine synthase D TruD [Methanococcus maripaludis C7]
gi|150034583|gb|ABR66696.1| tRNA pseudouridine synthase D TruD [Methanococcus maripaludis C7]
Length = 430
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 126/245 (51%), Gaps = 11/245 (4%)
Query: 22 ENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFK 81
E W G F+ F + K N +T +AL I K ++FGFAGTKDK +V+TQR F
Sbjct: 90 ETWH---GSFIHFTVEKTNWNTMDALKQIVKATKTKRKNFGFAGTKDKFAVTTQRFGCFG 146
Query: 82 QRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSL 141
+ +L + + I IR D + L +G L GN+FTI +R + + +++ + S +L
Sbjct: 147 IKKEQLENIKIKDIVIR--DVQKSNKKLRMGDLWGNKFTIKIRDLDLSKKEIERIS--NL 202
Query: 142 GRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKE 201
+ +NY+G+QRFG TH+VG + +++SA E + +AR+ +
Sbjct: 203 KLDYVLNYYGIQRFGLVRPITHIVGKFIYERDFESAFYTYCGTPINETGDSLEARQLV-D 261
Query: 202 TDDIDGTLRKLPR-HLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
+ L+ R H +R I Q LK ++ A A+P L M+V++YQ++L+N
Sbjct: 262 MGEFKKALKLFNRNHDYEKRLIQQYLK--YKDFKMAFTALPPQLNSMFVNAYQAYLFNEM 319
Query: 261 ASARV 265
+ R
Sbjct: 320 INKRF 324
>gi|448320006|ref|ZP_21509494.1| tRNA pseudouridine synthase D [Natronococcus amylolyticus DSM
10524]
gi|445606412|gb|ELY60316.1| tRNA pseudouridine synthase D [Natronococcus amylolyticus DSM
10524]
Length = 456
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 85/282 (30%), Positives = 123/282 (43%), Gaps = 38/282 (13%)
Query: 32 LRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALN 91
L F DT + IS LGI +AGTKDK +V+TQ +V+ L ++
Sbjct: 57 LVFRATLRGWDTNDFASRISDALGISRERVNWAGTKDKYAVTTQLFSVYGAEPPDLPDVD 116
Query: 92 KRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSE-----DVIKASANSLG---- 142
G L L G L GN F + VV D E +VI G
Sbjct: 117 ----GADLEVLGRAGRNLEFGDLAGNAFEV----VVGDPERPENAEVITDELREFGGLED 168
Query: 143 -------------RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGE 188
G N+FG QRFGS TH VG ++R W+ AV L +P + E
Sbjct: 169 GRPDREGNGSDATPVGVPNFFGQQRFGSRRPVTHKVGLEIVRRNWEGAVMAYLGNPTDAE 228
Query: 189 RNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKC-----PGNYLQALKAIPRT 243
+AR + +ET D L ++P L ER++ L +C P + AL+ +P
Sbjct: 229 PEGTQEARAFVEETRDWQEALERIPNRLRYERSMCHALAECEDEPGPEEFRAALERVPSN 288
Query: 244 LRMMYVHSYQSFLWNHAASARVQKH-GTEHVVVGDLVFCKGD 284
L+ ++VH+ QS+ +N S R+++ + V GD+V C D
Sbjct: 289 LQRLFVHAAQSYAFNRMLSERLERGLPFDRPVAGDVV-CFSD 329
>gi|345004277|ref|YP_004807130.1| tRNA pseudouridine synthase D [halophilic archaeon DL31]
gi|344319903|gb|AEN04757.1| tRNA pseudouridine synthase D [halophilic archaeon DL31]
Length = 456
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 84/273 (30%), Positives = 127/273 (46%), Gaps = 36/273 (13%)
Query: 42 DTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGI--RL 99
DT + +S L I +AGTKDK +V+TQ +++ + L + I + R
Sbjct: 67 DTNDFASRLSDALSISRERVDWAGTKDKYAVTTQLFSIYDADPADLPEIRDAEIEVVGRA 126
Query: 100 GDFCYVKEGLLLGQLLGNRFTITLRGV-----VVDSEDVIKASANSLGRNGFINYFGLQR 154
G L G L GN F IT+R + + ++A A R G N FG QR
Sbjct: 127 G------RHLSYGDLAGNAFEITVRDPKSPENADEITEQLRAFAGDSDRAGVPNIFGHQR 180
Query: 155 FGSGSVPTHLVGATLLRGEWKSAV-KMILDPREGERNEISKAREYYKET-----DDIDGT 208
FGS TH VG ++RGEW+ AV + +P E E + AR + E D D
Sbjct: 181 FGSRRPVTHEVGLHIVRGEWRGAVLSYVGNPFETEPEDTQSARGFVDEQAVSDEPDWDAC 240
Query: 209 LRKLPRHLVAERAILQCLK---------------KCPGNYLQALKAIPRTLRMMYVHSYQ 253
L ++PR L ER++L L+ + P + AL+A+P L+ ++V++ Q
Sbjct: 241 LDRMPRKLGYERSMLHRLRERETGSGDPSAGSDQETPDPWRYALEAVPSNLQRLFVNAAQ 300
Query: 254 SFLWNHAASARVQKH-GTEHVVVGDLVFCKGDD 285
S+ +N S R+++ E V GD V C D+
Sbjct: 301 SYAFNRILSERLERGLPFERPVTGD-VCCFADN 332
>gi|83315830|ref|XP_730962.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23490851|gb|EAA22527.1| Homo sapiens KIAA1897 protein [Plasmodium yoelii yoelii]
Length = 717
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 98/173 (56%), Gaps = 9/173 (5%)
Query: 17 DSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQR 76
D +EN + +++ F LYK NKDTQEA+ ISKM I + F ++G KDKRSVSTQ
Sbjct: 162 DKNNAENLETE--EWVNFVLYKVNKDTQEAIREISKMSDIEIKDFHYSGFKDKRSVSTQI 219
Query: 77 VTVFKQRASKL-----AALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSE 131
++ + K+ NK++ + + K+ + LG+ GNRF + LR + + E
Sbjct: 220 ISTNVRNLKKILDIKNYYFNKKIKNLLICKIEKCKKKIELGEHNGNRFIVVLRN-IQNYE 278
Query: 132 DVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDP 184
D +K N++ + GFINYFG+QRFG S T G L+ +K ++ +LDP
Sbjct: 279 DYLKNRLNNIKKKGFINYFGMQRFGVYS-NTFNKGKALISRNYKDYIRHVLDP 330
>gi|336254239|ref|YP_004597346.1| tRNA pseudouridine synthase D [Halopiger xanaduensis SH-6]
gi|335338228|gb|AEH37467.1| tRNA pseudouridine synthase D [Halopiger xanaduensis SH-6]
Length = 449
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 85/275 (30%), Positives = 126/275 (45%), Gaps = 28/275 (10%)
Query: 42 DTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGD 101
DT + +S LG+ +AGTKDK +V+TQ +V+ L +N I +
Sbjct: 67 DTNDFATRLSDALGVSRERVNWAGTKDKYAVTTQLFSVYGADPEDLPDVNGADIEV---- 122
Query: 102 FCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSL-------GRNG------FIN 148
L G L GN F + + D D A + L G NG N
Sbjct: 123 LGRAGRSLEFGDLAGNEFELVVSDP--DRPDNAAAITDELREFGGFDGSNGQAVSVGVPN 180
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILD-PREGERNEISKAREYYKETDDIDG 207
+FG QRFGS TH VG ++R +W+ AV L P + E +AR + +ET D
Sbjct: 181 FFGQQRFGSRRPITHEVGLEIVRDDWEGAVMAYLGRPTDAEPEGTQEARTFVEETRDWQE 240
Query: 208 TLRKLPRHLVAERAILQCLKKC-----PGNYLQALKAIPRTLRMMYVHSYQSFLWNHAAS 262
L + P L ER++L L +C P + AL+ +P L+ ++VH+ QS+ +N S
Sbjct: 241 ALERFPNRLRYERSMLHELAECDGEPGPEEFRAALERLPSNLQRLFVHAAQSYAFNLMLS 300
Query: 263 ARVQKH-GTEHVVVGDLVFCKGDDTEKELGCVNPE 296
R+++ + V GD V C DT+ G V P+
Sbjct: 301 ERLERGLPFDRPVEGD-VACFA-DTDAPEGLVLPD 333
>gi|327311799|ref|YP_004338696.1| Pseudouridylate synthase [Thermoproteus uzoniensis 768-20]
gi|326948278|gb|AEA13384.1| Pseudouridylate synthase [Thermoproteus uzoniensis 768-20]
Length = 411
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 94/376 (25%), Positives = 167/376 (44%), Gaps = 69/376 (18%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
+L H+ K + DT + + + + LG+ G G KD R+V++Q +++F + L
Sbjct: 61 WLWVHVVKRDVDTLKLVEALRRSLGLRRGDIGIGGIKDARAVASQIISLFGVKPEDL--- 117
Query: 91 NKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYF 150
++ G+ F Y + ++ GNRFT+ LR V V+ + +L + NY+
Sbjct: 118 -PKIPGVEYKGFWYADSPVSPSRIAGNRFTLVLRDVDVECA---AEALRALKASPLPNYY 173
Query: 151 GLQRFGSGSVPTHLVGATLLRGEWKSAVK-MILDPREGERNEISKAREYYKETDDIDGTL 209
G QRFG+ +HL+G L+R + ++ M E E +ARE D L
Sbjct: 174 GYQRFGTVRPVSHLLGRALVRRDPDEFIEVMFCRVFEAESPAAREARE-LACRGDYSAAL 232
Query: 210 RKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHG 269
K+P+ L+ ER +L+ L N A+ A+P ++ ++V +YQ++L+N S R+
Sbjct: 233 SKMPKSLLEERRLLKALASG-ENPWNAIMAVPYSILKIFVEAYQAYLFNKMLSLRL---- 287
Query: 270 TEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKT 329
+ LG A+D D V E +P
Sbjct: 288 ----------------ADGPLGA------------AED----DLVLEGGYP--------- 306
Query: 330 VTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSIT 389
I + K + VLP+PGS +I P + + + ++G+ L ++F+++
Sbjct: 307 -----ILAAKASDRQPVLPVPGSGLIIPESRARDYLRRVLGEEGLEL-------RDFALS 354
Query: 390 --SMTGNYRRVFQKPM 403
+ G+YRR+F P+
Sbjct: 355 RVGVAGSYRRIFVSPV 370
>gi|149443250|ref|XP_001521519.1| PREDICTED: pseudouridylate synthase 7 homolog-like protein-like,
partial [Ornithorhynchus anatinus]
Length = 178
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 70/182 (38%), Positives = 105/182 (57%), Gaps = 17/182 (9%)
Query: 34 FHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKL----AA 89
F L KEN +T EA+G +S LG+LP F +AG KDK++V+ Q + V K +L +A
Sbjct: 1 FTLRKENLETFEAIGYLSSELGVLPSDFSYAGIKDKKAVTYQAMVVKKVAPERLKEIRSA 60
Query: 90 LNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGV---VVDS-----EDVIKASANSL 141
+ K+ GI + + V + L LGQL GN F IT+R + DS E +++A N
Sbjct: 61 VEKK--GISIYNIHSVHQPLRLGQLTGNHFDITVRDLKRQTSDSSAKPKESIVEAIENVK 118
Query: 142 GRNGFINYFGLQRFGS-GSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYK 200
R GFINY+G QRFG SV T +G LL E AVK+ P + + + +++A++++
Sbjct: 119 TR-GFINYYGPQRFGQWQSVQTDQIGLALLNNEMVKAVKLFFTPEDLD-DPVNRAKKHFF 176
Query: 201 ET 202
+T
Sbjct: 177 QT 178
>gi|322420158|ref|YP_004199381.1| tRNA pseudouridine synthase D TruD [Geobacter sp. M18]
gi|320126545|gb|ADW14105.1| tRNA pseudouridine synthase D TruD [Geobacter sp. M18]
Length = 398
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 126/246 (51%), Gaps = 11/246 (4%)
Query: 38 KENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGI 97
K T EA+ +SK LG+ R G+AG KD ++ Q V++ + K+ AL IGI
Sbjct: 46 KRGIATLEAVRRLSKSLGVQERDIGYAGMKDAVGITRQTVSIPRVAPEKVLALEIPGIGI 105
Query: 98 RLGDFCYVKEG--LLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQRF 155
V G L LG L GNRF I +R V + +A L R G N FG+QR+
Sbjct: 106 ----LSAVLHGNKLRLGHLKGNRFEIRVRDVASGALARAEAVLALLTRRGVPNRFGVQRY 161
Query: 156 GSGSVPTHLVGATLLRGEWKSAV-KMILDPREGERNEISKAREYYKETDDIDGTLRKLPR 214
G TH++GA +LR ++K+AV +I DP +A E Y++ D++ +L P
Sbjct: 162 GVQG-NTHVIGAAMLRRDYKAAVDTLIGDPALVTDERWRQAIEAYRQ-GDLEKSLALFPG 219
Query: 215 HLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVV 274
H ER ++ L++ P +A ++ ++ +Y+ ++QS L++ R+++ + +
Sbjct: 220 HFRVERELIGRLQQRPDACEKAFNSVQPRMKRLYLSAFQSSLFDLVLDQRLER--LDRIE 277
Query: 275 VGDLVF 280
GD+ F
Sbjct: 278 AGDIAF 283
>gi|284164754|ref|YP_003403033.1| tRNA pseudouridine synthase D TruD [Haloterrigena turkmenica DSM
5511]
gi|284014409|gb|ADB60360.1| tRNA pseudouridine synthase D TruD [Haloterrigena turkmenica DSM
5511]
Length = 454
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 125/270 (46%), Gaps = 36/270 (13%)
Query: 42 DTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGD 101
DT + G +S LG+ +AGTKDK +V+TQ +++ L + I +
Sbjct: 67 DTNDFAGRLSDALGVSRERVNWAGTKDKYAVTTQLFSIYGADPEDLPEVRGADIEV---- 122
Query: 102 FCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASA-----NSLGRN------------ 144
L G L GN F + +V D++ A+A ++ G +
Sbjct: 123 VGRAGRSLEFGDLAGNEFEL----IVSDADAPENATAITEELHAFGGHEESDADAADGSS 178
Query: 145 ---GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYYK 200
G N+FG QRFGS TH VG ++RG W+ AV L +P + E +AR + +
Sbjct: 179 TAVGVPNFFGQQRFGSRRPVTHEVGLEIVRGSWEGAVMAYLGNPTDAEPESTQEARRFIE 238
Query: 201 ETDDIDGTLRKLPRHLVAERAILQCLKKC-----PGNYLQALKAIPRTLRMMYVHSYQSF 255
ET D L + P L ER++ L + P ++ AL+ +P L+ ++VH+ QS+
Sbjct: 239 ETRDWQEALERFPNRLRYERSLCHGLAEVDGDPEPDDFRAALERLPSNLQRLFVHAAQSY 298
Query: 256 LWNHAASARVQKH-GTEHVVVGDLVFCKGD 284
+N SAR+++ + V GD V C D
Sbjct: 299 AFNLMLSARLERGLPFDEPVAGD-VACFAD 327
>gi|224149680|ref|XP_002336848.1| predicted protein [Populus trichocarpa]
gi|222837000|gb|EEE75393.1| predicted protein [Populus trichocarpa]
Length = 118
Score = 101 bits (252), Expect = 9e-19, Method: Composition-based stats.
Identities = 52/102 (50%), Positives = 63/102 (61%), Gaps = 25/102 (24%)
Query: 157 SGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHL 216
SGSV TH +GA LL GEW+S + AREYY+E +D +GTLR+LPRH
Sbjct: 10 SGSVSTHFLGAALLGGEWES----------------TAAREYYEERNDTEGTLRQLPRHR 53
Query: 217 VAERAILQC---------LKKCPGNYLQALKAIPRTLRMMYV 249
VAE I+ C K+CPG+YLQALKAIPR +RMM V
Sbjct: 54 VAEGVIVSCRLSLLHSSVFKECPGDYLQALKAIPRIMRMMQV 95
>gi|269986857|gb|EEZ93134.1| tRNA pseudouridine synthase D TruD [Candidatus Parvarchaeum
acidiphilum ARMAN-4]
Length = 406
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 128/249 (51%), Gaps = 18/249 (7%)
Query: 26 EQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRAS 85
E+ +L F L K T EA+ I++ L I + + G KDKR++++QR+++FK A
Sbjct: 52 EEKKDYLLFTLVKRGISTPEAIKSIARNLHISFKRIAYNGNKDKRALTSQRISIFKFDAE 111
Query: 86 KLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNG 145
+L ++R+ D Y E +G+L GN FT+T++ + + + + + ++ G
Sbjct: 112 RLKLESERMF---FRDIVYSNEPCKIGKLYGNHFTVTVKKLENPMQQLQEIAEDA--AKG 166
Query: 146 FINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGE-------RNEISKAREY 198
N++G QRFGS S+ + +++ ++KSA ++ E R+E+ +
Sbjct: 167 IPNFYGPQRFGSSSLNIK-ISRNIIKRDFKSAFYTLVFTERAESQLNQEKRSELREFFSP 225
Query: 199 YKETDDID-----GTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQ 253
Y E DID L LP + ER LQ L +Y+ A++ +P+ +R++ + +YQ
Sbjct: 226 YLEGMDIDLEKAREILSSLPGFMYFERDSLQYLLVHKNDYIGAIRMMPKYIRLLIIQAYQ 285
Query: 254 SFLWNHAAS 262
+++N S
Sbjct: 286 YYIFNRTLS 294
>gi|448728834|ref|ZP_21711155.1| tRNA pseudouridine synthase D [Halococcus saccharolyticus DSM 5350]
gi|445796209|gb|EMA46720.1| tRNA pseudouridine synthase D [Halococcus saccharolyticus DSM 5350]
Length = 474
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 84/302 (27%), Positives = 130/302 (43%), Gaps = 39/302 (12%)
Query: 34 FHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKR 93
F +N DT + +G +S L +AGTKDKR+VSTQ +V + LA
Sbjct: 59 FRATLDNWDTNDFVGALSNRLESSRERVSWAGTKDKRAVSTQLFSVDGVDQATLADAAAG 118
Query: 94 LIGIRLGDFCYVKEGLLLGQLLGNRFTITLR-------GVVVDSEDVIKASANSLGRN-- 144
L + + L G L GN F I +R + D + + GR
Sbjct: 119 LDDVDITIVGRSGRALRFGDLAGNAFEIVVREADPEPVAAITDDLRAFGSESGDDGRTSS 178
Query: 145 ------GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAV-KMILDPREGERNEISKARE 197
G NYFG QRFGS TH VG ++RG+W AV + +P E E ++ +AR
Sbjct: 179 DGGVTVGVPNYFGQQRFGSLRPVTHEVGLAIVRGDWAGAVLAYVGNPHESEPDDTREARA 238
Query: 198 YYK------------------ETDDIDGTLRKLPRHLVAERAILQCL----KKCPGNYLQ 235
+ + +D + L +LP L ER+++ L ++
Sbjct: 239 FVEREFRVDDGDTEAETATRVRSDGWEAALERLPNRLGFERSMVHRLIENGAHSQDDFRA 298
Query: 236 ALKAIPRTLRMMYVHSYQSFLWNHAASARVQKH-GTEHVVVGDLVFCKGDDTEKELGCVN 294
A++A+P L+ ++V++ QS L+N S R+ + V GD+V D EL +
Sbjct: 299 AIEAVPSNLQRLFVNAAQSSLFNRILSERLARGLPFGRAVAGDVVCFADPDAPDELRVPD 358
Query: 295 PE 296
P+
Sbjct: 359 PD 360
>gi|448579747|ref|ZP_21644741.1| tRNA pseudouridine synthase D [Haloferax larsenii JCM 13917]
gi|445723083|gb|ELZ74733.1| tRNA pseudouridine synthase D [Haloferax larsenii JCM 13917]
Length = 448
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 113/243 (46%), Gaps = 23/243 (9%)
Query: 42 DTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGI--RL 99
DT + G +S LG+ +AGTKDK +V+TQ TV A + + I + RL
Sbjct: 69 DTNDFAGHLSDELGVSRERVSWAGTKDKHAVTTQLFTVHGGDADDVPEIRNADIEVVGRL 128
Query: 100 GDFCYVKEGLLLGQLLGNRFTITLRGV-----VVDSEDVIKASANSLGRNGFINYFGLQR 154
G L G L GN F I +R V D D ++ G G NYFG QR
Sbjct: 129 G------RTLDFGDLAGNHFRIRVRNPDHPENVADITDSLREFGGRDGMVGVPNYFGHQR 182
Query: 155 FGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYYKE-----TDDIDGT 208
FGS TH VG ++RGEW+ AV P E E E K R E D
Sbjct: 183 FGSIRPITHTVGLHVVRGEWREAVLAYCGGPTEDEPEETQKGRAIVDEEAASADPDWHRA 242
Query: 209 LRKLPRHLVAERAILQCL----KKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASAR 264
L +P +L ER +L L + ++ AL+++P L+ ++V++ QS+++N S R
Sbjct: 243 LDAIPGYLGYERGMLHRLAEDGAETDDDWRNALESVPSNLQRLFVNAAQSYVFNQILSER 302
Query: 265 VQK 267
+ +
Sbjct: 303 LDR 305
>gi|156095201|ref|XP_001613636.1| hypothetical protein [Plasmodium vivax Sal-1]
gi|148802510|gb|EDL43909.1| hypothetical protein, conserved [Plasmodium vivax]
Length = 901
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 92/177 (51%), Gaps = 14/177 (7%)
Query: 20 GSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTV 79
G N E +++ F LYK NKDTQEA+ ISK I + F +AG KDKRSVSTQ ++
Sbjct: 155 GESNPQEGKNEWISFILYKVNKDTQEAIREISKRTNIPIKDFYYAGFKDKRSVSTQIIST 214
Query: 80 FKQRASKLAAL------------NKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVV 127
K+ + +R+ I++ V + + LG GNRF I LR V
Sbjct: 215 SMMHIRKIRNMMSSDLSDHEQLKKRRMRNIQICSLEKVHQKIELGAHSGNRFVIVLRNVQ 274
Query: 128 VDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDP 184
ED ++ + ++GFINYFG+QRFG T G L+R ++K + +LDP
Sbjct: 275 T-HEDYLRHKLEQIKKHGFINYFGMQRFGVYK-NTFNKGKALIRRDYKEYIGHVLDP 329
>gi|354612097|ref|ZP_09030049.1| tRNA pseudouridine synthase D [Halobacterium sp. DL1]
gi|353191675|gb|EHB57181.1| tRNA pseudouridine synthase D [Halobacterium sp. DL1]
Length = 434
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 77/263 (29%), Positives = 121/263 (46%), Gaps = 18/263 (6%)
Query: 42 DTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGD 101
DT + + +G+ +AGTKD+ +V+TQ + A+ + + + +
Sbjct: 67 DTNDFARSFANAVGMSRERVTWAGTKDRHAVTTQLFAIRDLDAADVPEVRNADVKV---- 122
Query: 102 FCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGF-------INYFGLQR 154
GL G L GN F + +R D E+ KA + F NYFG QR
Sbjct: 123 VGRAGRGLQFGDLAGNEFRVVVR----DPENPGKADGVTEDLRDFGSGAVATPNYFGQQR 178
Query: 155 FGSGSVPTHLVGATLLRGEWKSAVKMILD-PREGERNEISKAREYYKETDDIDGTLRKLP 213
FGS TH VG +LR +W+ A L P E E + +AREY ++T D G L + P
Sbjct: 179 FGSKRPITHEVGLAILRDDWEGAAMAYLGRPTEYEPADSQRAREYVEDTRDWAGALDEFP 238
Query: 214 RHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEH- 272
L ER +L L G++ A++ P L+ ++V++ QS+ +N S R+ + H
Sbjct: 239 GRLRYERTMLHELADG-GSFRDAVETFPSNLQRLFVNAAQSYAFNRMLSERMARGLPFHE 297
Query: 273 VVVGDLVFCKGDDTEKELGCVNP 295
V GD+V+ D + +P
Sbjct: 298 PVAGDVVWFAESDAPDGVARPDP 320
>gi|374326822|ref|YP_005085022.1| Pseudouridylate synthase [Pyrobaculum sp. 1860]
gi|356642091|gb|AET32770.1| Pseudouridylate synthase [Pyrobaculum sp. 1860]
Length = 416
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 84/268 (31%), Positives = 135/268 (50%), Gaps = 14/268 (5%)
Query: 27 QLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASK 86
++G + H+ K N DT + ++K LG+ PR G KD R+V++Q V+V R S
Sbjct: 59 RVGGWTWIHVVKRNVDTIRLVLRLAKALGLGPRDVSVGGIKDTRAVASQIVSV---RGS- 114
Query: 87 LAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGF 146
+A L K + G+ + + ++ GNRFTI +RG V+ D + + L
Sbjct: 115 VADLPK-IPGVEYLGAWPMDRPISPAEIYGNRFTIVIRG--VERVDCARETLELLKSVAV 171
Query: 147 INYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMI---LDPREGERNEISKAREYYKETD 203
NY+G QRFG+ THL+G LLR + ++ +++ + P E E + +ARE
Sbjct: 172 PNYYGYQRFGTIRPVTHLLGMALLRKDPQAFFEIMFCRVFPHESEAAK--RARE-LACRG 228
Query: 204 DIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASA 263
+ L P+ LV ERA+L+ L + ++ AIP + +YV + QS+L+N SA
Sbjct: 229 EYQRALESFPKKLVEERALLRRLAAG-YDMWNSIMAIPLQILRIYVEAAQSYLYNRLLSA 287
Query: 264 RVQKHGTEHVVVGDLVFCKGDDTEKELG 291
R++ + V GDLV G +G
Sbjct: 288 RMELGPLDKPVEGDLVEVNGQVVYYTVG 315
>gi|68077101|ref|XP_680470.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56501407|emb|CAH94987.1| conserved hypothetical protein [Plasmodium berghei]
Length = 822
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 92/159 (57%), Gaps = 7/159 (4%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA-- 88
++ F LYK NKDTQEA+ ISKM I + F ++G KDKRSVSTQ ++ + K+
Sbjct: 174 WVNFALYKVNKDTQEAIREISKMSDIEIKDFHYSGFKDKRSVSTQIISTNLRNLKKIIDI 233
Query: 89 ---ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNG 145
NK++ + + K+ + LG+ GNRF + LR + + E+ +K N++ + G
Sbjct: 234 KNYYFNKKIKNLLICKIEKCKKKIELGEHNGNRFIVVLRN-IQNYEEYLKNRLNNIKKKG 292
Query: 146 FINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDP 184
FINYFG+QRFG S T G L+ +K ++ +LDP
Sbjct: 293 FINYFGMQRFGVYS-NTFNKGKALISRNYKDYIRHVLDP 330
>gi|352682804|ref|YP_004893328.1| tRNA pseudouridine synthase D [Thermoproteus tenax Kra 1]
gi|350275603|emb|CCC82250.1| probable tRNA pseudouridine synthase D [Thermoproteus tenax Kra 1]
Length = 415
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 96/390 (24%), Positives = 172/390 (44%), Gaps = 67/390 (17%)
Query: 20 GSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTV 79
G+E + G +L H+ K + DT + + + K L + G KD R+V++ +++
Sbjct: 54 GAELPRSRPGPWLLVHVVKRDVDTLKLIEELRKTLKLKGDEIKIGGIKDARAVASHVISL 113
Query: 80 FKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASAN 139
+K R L R+ G+ DF Y + ++ GN+FT+ +R D +K +A
Sbjct: 114 YKIRPEDLP----RIPGVVYKDFAYADAPITPARIEGNKFTVVIRET--DCGCALK-TAE 166
Query: 140 SLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVK-MILDPREGERNEISKAREY 198
L NY+G QRFG+ +HL+G L++ + + + M EGE + +AR
Sbjct: 167 LLRNVPIANYYGYQRFGTIRPTSHLLGRALVKRDPEEFLNVMFCKIFEGESELVKEAR-L 225
Query: 199 YKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYL-QALKAIPRTLRMMYVHSYQSFLW 257
D D L K+P+ ++ ERA+L+ L G L A+ AIPR + +Y+ +YQ++L+
Sbjct: 226 LACRGDYDKALEKMPKSMLEERALLKALSS--GQSLWNAIAAIPRNILKIYLEAYQAYLF 283
Query: 258 NHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPET 317
N S R+++ + DD L P
Sbjct: 284 NRMLSLRLREG--------------------------------IATMPDDLVMLGNYP-- 309
Query: 318 DHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLT 377
+ A+ ++G I + +P G+ ++ P + E + ++G+ L
Sbjct: 310 ------------ILAS--HAGGAGIPVLPVP--GAGIVVPESRAREYLRKILREEGLEL- 352
Query: 378 ESLHNVKEFSITSMTGNYRRVFQKPMDFEW 407
+ V+ S++G+YRRVF +P D +
Sbjct: 353 QDFAAVR----VSVSGSYRRVFVEPRDLAY 378
>gi|448310585|ref|ZP_21500401.1| tRNA pseudouridine synthase D [Natronolimnobius innermongolicus JCM
12255]
gi|445607732|gb|ELY61608.1| tRNA pseudouridine synthase D [Natronolimnobius innermongolicus JCM
12255]
Length = 450
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 113/248 (45%), Gaps = 30/248 (12%)
Query: 42 DTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGD 101
DT + +S LG +AGTKDK +V+TQ +V+ L ++ G L
Sbjct: 67 DTNDFASRLSDALGCSRERVNWAGTKDKYAVTTQLFSVYGADPGDLPDVD----GADLEV 122
Query: 102 FCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFI-------------- 147
L G L GN F + VV D + A + + F
Sbjct: 123 LGRAGRSLEFGDLAGNEFEL----VVSDPDAPENAREITDELHAFGGLDSDSDSDGVSVG 178
Query: 148 --NYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYYKETDD 204
N+FG QRFGS TH VG ++RG+WK AV L +P + E ARE+ +ET+D
Sbjct: 179 VPNFFGQQRFGSRRPVTHEVGLEIVRGDWKGAVMAYLGNPTDAEPESTQDAREFVEETED 238
Query: 205 IDGTLRKLPRHLVAERAILQCLKKC-----PGNYLQALKAIPRTLRMMYVHSYQSFLWNH 259
+ + P L ER++ + + P ++ AL+ +P L+ ++VH+ QS+ +N
Sbjct: 239 WQEAIERFPNRLRYERSLCHGMAEVDGEPEPADFRAALERLPSNLQRLFVHAAQSYAFNL 298
Query: 260 AASARVQK 267
S R+++
Sbjct: 299 MLSRRLER 306
>gi|313127281|ref|YP_004037551.1| hypothetical protein Hbor_25520 [Halogeometricum borinquense DSM
11551]
gi|448288245|ref|ZP_21479446.1| tRNA pseudouridine synthase D [Halogeometricum borinquense DSM
11551]
gi|312293646|gb|ADQ68106.1| conserved hypothetical protein TIGR00094 [Halogeometricum
borinquense DSM 11551]
gi|445570284|gb|ELY24850.1| tRNA pseudouridine synthase D [Halogeometricum borinquense DSM
11551]
Length = 462
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 84/284 (29%), Positives = 130/284 (45%), Gaps = 34/284 (11%)
Query: 42 DTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGD 101
DT + +S LGI +AGTKDK +V+TQ +V ++ A+N I + LG
Sbjct: 67 DTNDFARRLSDALGISRERVSWAGTKDKYAVTTQLFSVRDASPDEIPAINNADIEV-LG- 124
Query: 102 FCYVKEGLLLGQLLGNRFTITLRGV---------------VVDSEDVIKASANSLGRNGF 146
+ L G L GN F + +R + ED + +A G
Sbjct: 125 --RIGRDLGFGDLAGNDFDVRVRDADASANAATVTAQLQAFLTDEDAVDGAATE-GETAA 181
Query: 147 I---NYFGLQRFGSGSVPTHLVGATLLRGEWKSAV-KMILDPREGERNEISKAREYYKE- 201
+ NYFG QRFGS TH VG ++RGEW AV + +P E + AR + E
Sbjct: 182 VAVPNYFGHQRFGSRRPVTHEVGLHVVRGEWCEAVLSYVGNPASAEPDGTQAARRFVDEQ 241
Query: 202 --TDDID--GTLRKLPRHLVAERAILQCL----KKCPGNYLQALKAIPRTLRMMYVHSYQ 253
+DD D L +P L ER++L L + ++ AL+A+PR L+ ++V++ Q
Sbjct: 242 AASDDPDWHAALETMPNRLRYERSMLHRLAEDGDESAEDWRHALEAVPRNLQRLFVNAAQ 301
Query: 254 SFLWNHAASARVQKH-GTEHVVVGDLVFCKGDDTEKELGCVNPE 296
S+++N S R+ + + GD+V D L +P+
Sbjct: 302 SYVFNRILSERLDRGLPLTRPIEGDVVCFADRDVPDRLYRADPD 345
>gi|9188102|emb|CAB97032.1| hypothetical protein L8382.04 [Leishmania major]
Length = 188
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 83/158 (52%), Gaps = 9/158 (5%)
Query: 145 GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDD 204
G INYFG QRFG+ + T VG L+G + ++MIL+ + E+ + E + + +
Sbjct: 35 GVINYFGRQRFGTTCILTSDVGVQFLQGRLREGLRMILESKARMVPEMQRVVELF-DASE 93
Query: 205 IDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASAR 264
L+ P ER IL+ L P +YL +L+ I RT+ MMY H QS +WN AS+R
Sbjct: 94 YAAALQTAPYFCYQERDILRHLSTNPTDYLGSLQTISRTMGMMYFHCVQSLVWNLLASSR 153
Query: 265 VQKHGTEHVVVGDLVFCKGDDTEKE----LGC-VNPEF 297
+ G H VGDLV + T +E GC N EF
Sbjct: 154 LSDKGRAHAEVGDLVL---ESTYQERVAHQGCAANAEF 188
>gi|124512126|ref|XP_001349196.1| tRNA pseudouridine synthase D, putative [Plasmodium falciparum 3D7]
gi|23498964|emb|CAD51042.1| tRNA pseudouridine synthase D, putative [Plasmodium falciparum 3D7]
Length = 868
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 92/171 (53%), Gaps = 21/171 (12%)
Query: 32 LRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL- 90
L F LYK NKDTQEA+ ISK+ GI SF ++G KDKRSVSTQ ++ +L L
Sbjct: 177 LHFILYKVNKDTQEAIREISKVSGIPITSFHYSGFKDKRSVSTQIISTKLNYLKELNNLK 236
Query: 91 -------NKRLIGIRLGDFCYV-----KEGLLLGQLLGNRFTITLRGVVVDSEDVIKASA 138
NK+L+ C + K+ + LG+ GN+F + LR V ++ED ++
Sbjct: 237 DYYINKKNKKLL------ICNIEKVRDKKKIELGEHYGNKFIVVLRN-VQNNEDYLRDRL 289
Query: 139 NSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGER 189
+ + GFINYFG+QRFG T G L+ +K + +LDP E+
Sbjct: 290 KYIKKYGFINYFGMQRFGIYK-NTFNKGRVLISRNYKEYINYVLDPHIFEK 339
>gi|322370110|ref|ZP_08044672.1| tRNA pseudouridine synthase D [Haladaptatus paucihalophilus DX253]
gi|320550446|gb|EFW92098.1| tRNA pseudouridine synthase D [Haladaptatus paucihalophilus DX253]
Length = 441
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 79/250 (31%), Positives = 125/250 (50%), Gaps = 16/250 (6%)
Query: 42 DTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGD 101
DT + +S +LGI +AGTKDKR+V+TQ ++ K L + L
Sbjct: 67 DTNDFARSLSSVLGISRERVSWAGTKDKRAVTTQLFSLRKVEPDDLPEMR----AAELEP 122
Query: 102 FCYVKEGLLLGQLLGNRFTITLRGV--VVDSEDV---IKASANSLGRNGFINYFGLQRFG 156
LL G L+GN F IT+ +++++ ++A A G N+FG QRFG
Sbjct: 123 VGRAGRELLFGDLVGNEFEITVSNPDHPENADEIAAQLRAFAGGDGALAVPNFFGQQRFG 182
Query: 157 SGSVPTHLVGATLLRGEWKSAV-KMILDPREGERNEISKAREYYKE-TDDIDGTLRKLPR 214
S TH VG ++R EW+ AV + +P E E + +ARE + D D L LP
Sbjct: 183 SLRPVTHEVGLHVVREEWEEAVMAYVGNPFETEPEDTREARERVENLAPDWDAVLDALPG 242
Query: 215 HLVAERAILQCLKKC----PGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKH-G 269
L ER++ L + P ++ AL+++P L+ + V++ QS+++N S R+Q+
Sbjct: 243 RLGFERSMAHRLVENGGTDPEDFRDALESLPTNLQRLLVNAAQSYVFNRILSKRLQRGLP 302
Query: 270 TEHVVVGDLV 279
+ V GD+V
Sbjct: 303 FDEPVAGDVV 312
>gi|289192050|ref|YP_003457991.1| tRNA pseudouridine synthase D TruD [Methanocaldococcus sp.
FS406-22]
gi|288938500|gb|ADC69255.1| tRNA pseudouridine synthase D TruD [Methanocaldococcus sp.
FS406-22]
Length = 396
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 84/284 (29%), Positives = 133/284 (46%), Gaps = 26/284 (9%)
Query: 34 FHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRAS-KLAALNK 92
+ L K N ++ +A ISK I R G+ G KD+ +++TQ +++ K+ L N
Sbjct: 29 YKLTKRNIESLKAFSYISKKFKIPLRDIGYCGLKDRHALTTQYISIPKKYGKLSLDEPNL 88
Query: 93 RLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGL 152
+L + F LLLG L GNRFTIT+RG+ D IK + L G NYF
Sbjct: 89 KLELVGESKF------LLLGDLEGNRFTITVRGIKKDDIPKIKENLKYL-EFGAPNYFDS 141
Query: 153 QRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISK--AREYYKETDDIDGTLR 210
QRFGS + +++G ++ AVK++L + +I K R K D D
Sbjct: 142 QRFGS-VFDKKFIAKEVIKGNYEEAVKILLTKYKKSEKKIIKDLKRFISKNWGDWDKVWN 200
Query: 211 KLPRHLVAERAILQCLK--KCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKH 268
+ + + + + +K K +Y +AL + L+ ++V +YQS+LWN ++K+
Sbjct: 201 YIKENNIKAKLYVNMVKELKKSNDYKKALSYVDDRLKKIFVAAYQSYLWNECVKELLKKY 260
Query: 269 GTEHVVV------GDLVFCKGDDTE-------KELGCVNPEFEY 299
E V G L+F K D E K+ + P+ EY
Sbjct: 261 IPEEDRVYYEYECGTLMFYKKMDREVFNLLKDKKFPTIAPDIEY 304
>gi|448301616|ref|ZP_21491607.1| tRNA pseudouridine synthase D [Natronorubrum tibetense GA33]
gi|445583532|gb|ELY37862.1| tRNA pseudouridine synthase D [Natronorubrum tibetense GA33]
Length = 449
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 125/275 (45%), Gaps = 31/275 (11%)
Query: 32 LRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALN 91
L F + DT + +S L + +AGTKDK +V+TQ +V+ L ++
Sbjct: 57 LVFRVTLSGWDTNDFASRLSNALEMSRERVNWAGTKDKYAVTTQLFSVYGADPGDLPDVD 116
Query: 92 KRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKAS-------------- 137
I + L G L GN F + VV + + AS
Sbjct: 117 GAEIEV----LGRAGRNLEFGDLAGNAFEL----VVSEPDRPDNASEITDELHEFGGLDS 168
Query: 138 ANSLGRN-GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKA 195
N+ G + G N+FG QRFGS TH VG + RG W+ AV L +P + E +A
Sbjct: 169 PNAAGVSVGVPNFFGQQRFGSRRPVTHKVGLEIARGSWEGAVMAYLGNPTDEEPESTQEA 228
Query: 196 REYYKETDDIDGTLRKLPRHLVAERAILQCLKKC-----PGNYLQALKAIPRTLRMMYVH 250
R + +ET D L + P L ER++L + C P ++ AL+ +P L+ ++VH
Sbjct: 229 RAFVQETRDWQEALERFPNRLRYERSMLHGVVDCDGEPGPEDFRAALERVPSNLQRLFVH 288
Query: 251 SYQSFLWNHAASARVQKH-GTEHVVVGDLVFCKGD 284
+ QS+ +N S R+++ + V GD+V C D
Sbjct: 289 AAQSYAFNLMLSERLERGLPFDEPVEGDVV-CFAD 322
>gi|118348980|ref|XP_001007963.1| hypothetical protein TTHERM_00540380 [Tetrahymena thermophila]
gi|89289730|gb|EAR87718.1| hypothetical protein TTHERM_00540380 [Tetrahymena thermophila
SB210]
Length = 527
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 105/384 (27%), Positives = 167/384 (43%), Gaps = 67/384 (17%)
Query: 36 LYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLI 95
L+K D A+ ISK L + P++ AG K+KR ++T +++ S LN+R
Sbjct: 149 LFKNGIDNFTAIQNISKYLRLPPKNINAAGIKEKRGITTHLISIAMSNTS-AEILNQRFQ 207
Query: 96 GIRLG--DFCYVKEG---LLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYF 150
R F VK+ L G L GNRF++ ++ V + ++VIKA L + FINYF
Sbjct: 208 NSRWNKMKFQNVKDATSKLRAGDLYGNRFSLAIKLVSYEEQEVIKA-VEDLKKLRFINYF 266
Query: 151 GLQRFGS-GSVPTHLVGATLLRGEWKSAVKMILDPREGER--NEISKAREYYKETDDIDG 207
G+QRFG+ S+ TH +G +L+ + + I+ ++ NE KA + K+ I
Sbjct: 267 GMQRFGTNNSIHTHEIGLLILKRQQEQVFDSIVGQETNDKRVNEAKKA--FLKDKTQIRD 324
Query: 208 TLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQK 267
LR +P ER +LQ ++ N A + W+ A R
Sbjct: 325 ALRGIPFKYKIERTLLQGYERNSDNRQLACQ------------------WDIVAKKR--- 363
Query: 268 HGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLV 327
++ G+ +GDD E G E +Y+S D E+ D P
Sbjct: 364 --ENFLIDGE---AEGDD---ENGQEEEESKYQSIGDY-------EIEVIDDP------- 401
Query: 328 KTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYH-HLAEKDGINLTESLHNVKEF 386
N KYT+ DV++P+ G ++ P N Y + EKDG++ K+F
Sbjct: 402 --------NIDKYTLYDVLIPIIGGKLKVPENFNLNAYLISILEKDGLDQQLFEQVQKKF 453
Query: 387 SITSMTGNYRRVFQKPMDFEWELL 410
+ G YR + + D ++ L
Sbjct: 454 YV---EGGYRFLICQAEDVQYSRL 474
>gi|448327918|ref|ZP_21517237.1| tRNA pseudouridine synthase D [Natrinema versiforme JCM 10478]
gi|445616938|gb|ELY70548.1| tRNA pseudouridine synthase D [Natrinema versiforme JCM 10478]
Length = 455
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 82/293 (27%), Positives = 129/293 (44%), Gaps = 38/293 (12%)
Query: 32 LRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALN 91
L F DT + +S LGI +AGTKDK +V+TQ +V+ + L ++
Sbjct: 57 LVFRATLRGWDTNDFASRLSDALGISRERVNWAGTKDKYAVTTQLFSVYGADPADLPEID 116
Query: 92 KRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFI---- 147
G+ + L G L GN F + VV D E A+A + F
Sbjct: 117 ----GVEIEVLGRAGRNLEFGDLAGNAFEL----VVTDPERPDNAAAITDELRAFGGLES 168
Query: 148 -----------------NYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGER 189
N+FG QRFGS TH VG + R +W+ AV L +P + E
Sbjct: 169 GGGGSESSESATSIGVPNFFGQQRFGSRRPVTHKVGLAIARDDWEGAVMAYLGNPTDAEP 228
Query: 190 NEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCL-----KKCPGNYLQALKAIPRTL 244
+AR + +ET + L ++P L ER+++ L + P + AL+ +P L
Sbjct: 229 EGTQEARAFVEETREWQEALERVPHRLRYERSMIHALAEYDGEPGPEQFRAALERVPSNL 288
Query: 245 RMMYVHSYQSFLWNHAASARVQKH-GTEHVVVGDLVFCKGDDTEKELGCVNPE 296
+ ++VH+ QS+ +N S R+++ + V GD+V DT+ G P+
Sbjct: 289 QRLFVHAAQSYAFNLMLSERLERGLPFDRPVAGDVVCFS--DTDAPDGLALPD 339
>gi|82697894|gb|ABB88976.1| putative tRNA pseudouridine synthase D [uncultured crenarchaeote]
Length = 440
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 85/275 (30%), Positives = 135/275 (49%), Gaps = 26/275 (9%)
Query: 33 RFHLY---KENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAA 89
RF LY K D+ AL I K LGI R G KD ++VS Q T +
Sbjct: 83 RFPLYVLEKTGLDSNHALIEIRKELGIHVR---LLGIKDSKAVSLQYCT---SEQDTIQN 136
Query: 90 LNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFI-N 148
++ R +RL Y +E + ++GNRF I + ++ ++ S FI N
Sbjct: 137 VSTRHTKLRL--LGYTEESVRKSHMVGNRFDIRIHET--NNNNISDFSEEC----RFIPN 188
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISK-AREYYKETDDIDG 207
++GLQRFGS + THLVG +L+ +++ AV ++L E SK RE ++ +
Sbjct: 189 FYGLQRFGSARLVTHLVGRQILKRDFRGAVDLLLCYTTEYDTEFSKEIREKCQDPQNYQS 248
Query: 208 TLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQK 267
LR +PR + ER IL L ++ AL+ IP +R ++VH+YQ++L+N S +++
Sbjct: 249 VLRNMPRGMDIERLILSALVNGK-KHISALREIPINIRRLFVHAYQAYLFNKCLSTGIKE 307
Query: 268 -HGTEHVVVGDLVFCKGDDT-----EKELGCVNPE 296
VG+L F D + +K + +NP+
Sbjct: 308 GENVTECKVGNLCFEIEDQSNLGKLQKYVDTMNPD 342
>gi|256811289|ref|YP_003128658.1| tRNA pseudouridine synthase D [Methanocaldococcus fervens AG86]
gi|256794489|gb|ACV25158.1| tRNA pseudouridine synthase D TruD [Methanocaldococcus fervens
AG86]
Length = 396
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 86/285 (30%), Positives = 133/285 (46%), Gaps = 28/285 (9%)
Query: 34 FHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRAS-KLAALNK 92
+ L K N ++ A ISK I R G+ G KD+ +++TQ V++ K+ L N
Sbjct: 29 YKLTKRNIESLRAFSYISKKFRIPLRDIGYCGLKDRHALTTQYVSIPKKYGKFSLDEPNL 88
Query: 93 RLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASAN-SLGRNGFINYFG 151
+L I F LLLG L GNRFTIT+RG + ED+ K N G NYF
Sbjct: 89 KLELIGESKF------LLLGDLEGNRFTITVRG--LKKEDIPKMKENLKYLEFGAPNYFD 140
Query: 152 LQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISK--AREYYKETDDIDGTL 209
QRFGS + +++G ++ AVK++L + +I K R K D +
Sbjct: 141 SQRFGS-VFDKKFISKEVIKGNYEEAVKILLTKYKKSEKKIIKDLKRFIAKNWGDWNKIW 199
Query: 210 RKLPRHLVAERAILQCLK--KCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQK 267
+ ++ + R + +K K G+Y +AL + L+ ++V +YQS+LWN + K
Sbjct: 200 NYIEKNNIKARLYVNMVKELKESGDYKKALSYVDDRLKKIFVAAYQSYLWNECVKELLSK 259
Query: 268 HGTEHVVV------GDLVFCKGDD-------TEKELGCVNPEFEY 299
+ E V G L+F K D +K+ + P+ EY
Sbjct: 260 YIPEEDRVYYEYECGTLMFYKKMDEDIFNMLKDKKFPTIAPDIEY 304
>gi|294893380|ref|XP_002774443.1| tRNA pseudouridine synthase D, putative [Perkinsus marinus ATCC
50983]
gi|239879836|gb|EER06259.1| tRNA pseudouridine synthase D, putative [Perkinsus marinus ATCC
50983]
Length = 440
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 128/257 (49%), Gaps = 18/257 (7%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+++ F L+K++ T++AL IS+ GI + + AG KD+++++TQRV++ + +KL
Sbjct: 60 GEWIHFTLWKKDLTTRDALAEISRKTGISMKEWCVAGWKDRKAITTQRVSIRAELENKLK 119
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSE----DVIKASANSLGRN 144
+ IRL D V E L G GNRF ITLR D ++A +S+ N
Sbjct: 120 SYENG-NSIRLSDLS-VGEQLKAGHHDGNRFQITLRDFPFTLSSPDFDAVEALLDSIKNN 177
Query: 145 GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKA--REYYKET 202
G NY GLQRFG+ +G L+ AV +LDP + S+ E+++
Sbjct: 178 GVFNYAGLQRFGAFG-QAFRIGRHLIAERADLAVGALLDPAMTPLSSPSRCVLEEWHRTR 236
Query: 203 DDIDGTLRKLPRHLVAERAILQCLK-KCPGNYLQALK-AIPRTLRMMYVHSYQSFLWNHA 260
D R E A+L+ L C + +AL+ IP+ R Y+H+Y +LWN
Sbjct: 237 DAKSAISLSSGRVRELEYALLKRLAGDCRNDLNRALRTTIPKEHRRFYMHAYGCYLWNRM 296
Query: 261 ASARVQKHGTEHVVVGD 277
V + GTE VGD
Sbjct: 297 ----VSQCGTE---VGD 306
>gi|290558818|gb|EFD92211.1| tRNA pseudouridine synthase D TruD [Candidatus Parvarchaeum
acidophilus ARMAN-5]
Length = 398
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 132/262 (50%), Gaps = 18/262 (6%)
Query: 23 NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
N P+ FL F L K T EA+ +S+ L I + + G KDKR++++Q++++FK
Sbjct: 48 NIPKDKKDFLTFTLVKRGVSTPEAVKSLSRNLHISFKRIAYNGNKDKRALTSQKMSIFKF 107
Query: 83 RASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
A L R I + D Y + +G+L GN FT+ +R + +++D+ K +
Sbjct: 108 DAENLKFSTDR---IFIRDLAYSNDPCKIGKLYGNHFTVKVRDLNDNNKDLNKLKEEII- 163
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKET 202
G N++G QRFGS S+ V ++L+ ++K+A +++ E + R+ +ET
Sbjct: 164 -KGIPNFYGPQRFGSSSLNIE-VSKSILKKDFKTAFFLLVLKERAESKLNAYKRKGLRET 221
Query: 203 DDIDGT-----------LRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHS 251
++D T L LP + E+ + L + +Y A++ +P+ R++ + +
Sbjct: 222 INLDDTNNLDREKIKEVLASLPGFMYFEKESIAYLLEHKNDYAGAIRLMPKYSRLIILQA 281
Query: 252 YQSFLWNHAASARVQKHGTEHV 273
+Q +++N S + K G + +
Sbjct: 282 FQYYVFNQTLS-ELLKEGYDEI 302
>gi|448589899|ref|ZP_21649958.1| tRNA pseudouridine synthase D [Haloferax elongans ATCC BAA-1513]
gi|445735014|gb|ELZ86567.1| tRNA pseudouridine synthase D [Haloferax elongans ATCC BAA-1513]
Length = 448
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 112/243 (46%), Gaps = 23/243 (9%)
Query: 42 DTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGI--RL 99
DT + G +S LG+ +AGTKDK +V+TQ TV A + + I + RL
Sbjct: 69 DTNDFAGHLSDELGVSRERVSWAGTKDKHAVTTQLFTVHGGDADDVPEVRNADIEVVGRL 128
Query: 100 GDFCYVKEGLLLGQLLGNRFTITLRGV-----VVDSEDVIKASANSLGRNGFINYFGLQR 154
G L G L GN F I +R V D D ++ G NYFG QR
Sbjct: 129 G------RTLDFGDLAGNHFRIRVRNPDHPENVADITDSLREFGGRDDMVGVPNYFGHQR 182
Query: 155 FGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYYKE-----TDDIDGT 208
FGS TH VG ++RGEW+ AV P E E E R E D
Sbjct: 183 FGSIRPITHTVGLHVVRGEWREAVLAYCGGPTEDEPEETQDGRAIVDEEAASSDPDWHRA 242
Query: 209 LRKLPRHLVAERAILQCL----KKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASAR 264
L +P +L ER +L L + ++ AL+++P L+ ++V++ QS+++N S R
Sbjct: 243 LDAIPGYLGYERGMLHRLAEDGAETDDDWRNALESVPSNLQRLFVNAAQSYVFNQILSER 302
Query: 265 VQK 267
+++
Sbjct: 303 LER 305
>gi|319790538|ref|YP_004152171.1| tRNA pseudouridine synthase D TruD [Thermovibrio ammonificans HB-1]
gi|317115040|gb|ADU97530.1| tRNA pseudouridine synthase D TruD [Thermovibrio ammonificans HB-1]
Length = 388
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 78/255 (30%), Positives = 118/255 (46%), Gaps = 24/255 (9%)
Query: 25 PEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTV---FK 81
P GKF L K N T EAL +IS+ I + GFAG KD+ +V+ Q +TV F+
Sbjct: 24 PGNEGKFWLLKLKKRNTSTLEALRVISRFKKIPLKKIGFAGLKDRFAVTVQYLTVPVEFE 83
Query: 82 QRASKLAALNKRLIGIRLGDF-----CY-----VKEGLLLGQLLGNRFTITLRGVVVDSE 131
N R + + DF C V L LG L GNRFT+ +R +
Sbjct: 84 VGNWCFEFRNGRWVEVEAFDFTGMGFCVEPLGRVNRPLTLGDLKGNRFTVVIRNFEKNLR 143
Query: 132 DVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNE 191
+ + + R GF NYFG QRFGS V LLRG++ A++ ++
Sbjct: 144 ERFYRNYEVVKRYGFPNYFGEQRFGSVKSRDDFVLRYLLRGDFDGALRSYF----FGKSS 199
Query: 192 ISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHS 251
I ++ K + TL + + L+ R +++ L +A + +P+ +R+M+ +
Sbjct: 200 IDFWGDWRKLYKTLSPTLEEYEKDLI--RGLMRGLTAE-----KAFRILPKNVRLMFNFA 252
Query: 252 YQSFLWNHAASARVQ 266
YQSFLWN V+
Sbjct: 253 YQSFLWNEVLREYVE 267
>gi|325294318|ref|YP_004280832.1| tRNA pseudouridine synthase D [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325064766|gb|ADY72773.1| tRNA pseudouridine synthase D [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 389
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 132/274 (48%), Gaps = 46/274 (16%)
Query: 25 PEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTV----- 79
P++ GK+ L K N T EAL +IS++L I + GFAG KD+ +++ Q +TV
Sbjct: 24 PKEEGKYYFVKLKKSNVSTLEALRVISRLLKIPLKEVGFAGLKDRYAITEQYLTVPITYQ 83
Query: 80 -----FK---QRASKLAALN-KRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDS 130
FK R ++ ++N ++ +G L YV++ L LG L GNRF IT++ +
Sbjct: 84 IERKCFKLINNRWKEVNSVNFEKEMGFCLEVLGYVEKFLSLGDLKGNRFIITVKNFEKNM 143
Query: 131 EDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEW----------KSAVKM 180
+ + + GF NYFG QRFGS V LL+G++ KS+V
Sbjct: 144 RERFYKNLEVVKSYGFPNYFGEQRFGSVKSRDDFVLRYLLKGDFDGALRSYFFGKSSVDY 203
Query: 181 ILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAI 240
D R + +S A E Y E D I G L R L AE+ A + +
Sbjct: 204 WGDWRRLYKT-LSPALEEY-EKDLIRG----LMRGLTAEK---------------AFRIL 242
Query: 241 PRTLRMMYVHSYQSFLWNHAASARVQ-KHGTEHV 273
P+ +R+M+ ++QSFLWN ++ K+ E V
Sbjct: 243 PKNVRLMFNFAFQSFLWNEYLREYIEAKYPFERV 276
>gi|401406366|ref|XP_003882632.1| hypothetical protein NCLIV_023890 [Neospora caninum Liverpool]
gi|325117048|emb|CBZ52600.1| hypothetical protein NCLIV_023890 [Neospora caninum Liverpool]
Length = 1895
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 91/215 (42%), Gaps = 54/215 (25%)
Query: 24 WPEQLGKFLRFHLYKENKDTQEALGLISKML-GILPRSFGFAGTKDKRSVSTQRVTVFKQ 82
WP LG +L F L K N+DT AL I + L RS AGTKDKR ++ QR +V K
Sbjct: 942 WPADLGMYLHFILLKVNRDTSNALHNIGRGLRRYFQRSLAVAGTKDKRGITVQRCSVHKV 1001
Query: 83 RASKLAALNKRLI-------GIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDV-- 133
A L LN + + + + LG LLGN F + LR V + S
Sbjct: 1002 SAPAL--LNACYLDHPSWDSNVYIAPLGHYSRPQRLGALLGNSFQVILRNVRLPSSATHA 1059
Query: 134 ------------------------------------------IKASANSLGRNGFINYFG 151
+ A ++ GF+NYFG
Sbjct: 1060 CLPSNTLSLPSSFPSASRRAVVPPGFVPIVCCGPAVHVLASRVAAGMETISSRGFLNYFG 1119
Query: 152 LQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPRE 186
LQRFG+ +V T VGA LL+G+WK AV IL R+
Sbjct: 1120 LQRFGTHAVRTFEVGAALLQGDWKEAVARILGKRQ 1154
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 70/157 (44%), Gaps = 24/157 (15%)
Query: 232 NYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELG 291
+Y +AL+ IP +YVHS QS ++NHA + R + G + V VGD+V + +
Sbjct: 1413 DYFRALQEIPADSLQLYVHSAQSVIFNHACTWRWKALG-DKVCVGDVVRVRSRGSSSATP 1471
Query: 292 CVNPEFEYESSNDADDSSHLDEVPETDHPDGR-------------------HNLVKTVTA 332
+S ++ P+ + GR H VK V
Sbjct: 1472 SAGSTL--SASFSGCENGEACPTPDPEGVGGRFFFDEEPGETGGEDGEEHGHQTVK-VIE 1528
Query: 333 ADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLA 369
+ + + +I D+VLPLPG+ ++YP +A VY LA
Sbjct: 1529 TEAEAQQASIFDLVLPLPGADIVYPSQMMA-VYRQLA 1564
>gi|448731926|ref|ZP_21714209.1| tRNA pseudouridine synthase D [Halococcus salifodinae DSM 8989]
gi|445805204|gb|EMA55427.1| tRNA pseudouridine synthase D [Halococcus salifodinae DSM 8989]
Length = 474
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 93/317 (29%), Positives = 139/317 (43%), Gaps = 45/317 (14%)
Query: 34 FHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKR 93
F N DT + +G +S L +AGTKDKR+VSTQ +F AAL
Sbjct: 59 FRATLHNWDTNDFVGALSNRLESSRERVSWAGTKDKRAVSTQ---LFSVDGVDRAALVDA 115
Query: 94 LIGIRLGDFCYVKE---GLLLGQLLGNRFTITLRGV----VVDSEDVIKASA------NS 140
G+ D V L G L GN F I +R V D ++A +
Sbjct: 116 AAGLDDVDCTIVGRSGRALRFGDLAGNAFEIVVRDAETEPVTAITDDLRAFGGENDGDDE 175
Query: 141 LGRNGFI-----NYFGLQRFGSGSVPTHLVGATLLRGEWKSAV-KMILDPREGERNEISK 194
G NG + NYFG QRFGS TH VG ++RG+W AV + +P E ++ +
Sbjct: 176 TGSNGGVTVGVPNYFGQQRFGSLRPVTHEVGLAIVRGDWAGAVLAYVGNPHSNEPDDTRE 235
Query: 195 AREYYKETDDID------GT------------LRKLPRHLVAERAILQCL----KKCPGN 232
AR + + ID GT L +LP L ER+++ L + +
Sbjct: 236 ARTFVEREFRIDDEDAEAGTTTRVRSDGWEVALERLPNRLGFERSMVHRLVENGAQSRED 295
Query: 233 YLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKH-GTEHVVVGDLVFCKGDDTEKELG 291
+ A++A+P L+ ++V++ QS L+N S R+ + V GD+V D EL
Sbjct: 296 FRAAIEAVPSNLQRLFVNAAQSSLFNRILSERLARGLPFGRAVAGDVVCFADPDAPDELR 355
Query: 292 CVNPEFEYESSNDADDS 308
+P+ ++ D D+
Sbjct: 356 VPDPDRSQRATEDRVDT 372
>gi|448395875|ref|ZP_21568969.1| tRNA pseudouridine synthase D [Haloterrigena salina JCM 13891]
gi|445660456|gb|ELZ13252.1| tRNA pseudouridine synthase D [Haloterrigena salina JCM 13891]
Length = 459
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 115/257 (44%), Gaps = 39/257 (15%)
Query: 42 DTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGD 101
DT + G +S +G+ +AGTKDK +V+TQ +++ L + I I
Sbjct: 67 DTNDFAGRLSDAIGVSRERVNWAGTKDKYAVTTQLFSIYGADPEDLPEVRGADIEI---- 122
Query: 102 FCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASA-----NSLG-------------- 142
L G L GN F + VV D +D +A+ ++ G
Sbjct: 123 VGRAGRSLEFGDLAGNEFEL----VVSDPDDPQRATEITDELHAFGGLEDGTDETDDDAA 178
Query: 143 ------RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKA 195
G N+FG QRFGS TH VG ++R +W AV L +P + E +A
Sbjct: 179 GDETTVSIGVPNFFGQQRFGSRRPVTHEVGLEIVRDDWAGAVMAYLGNPADAEPESTQEA 238
Query: 196 REYYKETDDIDGTLRKLPRHLVAERAILQCLKKC-----PGNYLQALKAIPRTLRMMYVH 250
R + +ET D L + P L ER++ L + P +Y AL+ +P L+ ++VH
Sbjct: 239 RAFVEETRDWQEALERFPNRLRYERSLCHGLAEVDGDPDPEDYRAALERLPSNLQRLFVH 298
Query: 251 SYQSFLWNHAASARVQK 267
+ QS+ +N S R+++
Sbjct: 299 AAQSYAFNLMLSERLER 315
>gi|70951654|ref|XP_745050.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56525247|emb|CAH78414.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 820
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 91/160 (56%), Gaps = 8/160 (5%)
Query: 30 KFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKL-- 87
+++ F LYK NKDTQEA+ ISKM I + F ++G KDKR VSTQ ++ K+
Sbjct: 173 EWVHFVLYKVNKDTQEAIREISKMSDIEIKDFHYSGFKDKR-VSTQIISTNVHNLKKILD 231
Query: 88 ---AALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRN 144
NK++ + + K+ + LG+ GNRF + LR + + ED +K N++ +
Sbjct: 232 IKNYYFNKKIKTLLICKIEKCKKKIELGEHNGNRFIVVLRN-IQNYEDYLKNRLNNIKKK 290
Query: 145 GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDP 184
GFINYFG+QRFG S T G L+ +K +K +LDP
Sbjct: 291 GFINYFGMQRFGVYS-NTFNKGKALISRNYKDYIKHVLDP 329
>gi|159904667|ref|YP_001548329.1| tRNA pseudouridine synthase D TruD [Methanococcus maripaludis C6]
gi|159886160|gb|ABX01097.1| tRNA pseudouridine synthase D TruD [Methanococcus maripaludis C6]
Length = 430
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 125/245 (51%), Gaps = 11/245 (4%)
Query: 22 ENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFK 81
E W G F+ F + K N +T +AL I K ++FGFAGTKDK +V+TQR F
Sbjct: 90 ETWH---GSFIHFTVEKTNWNTMDALKQIVKATKTKRKNFGFAGTKDKFAVTTQRFGCFG 146
Query: 82 QRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSL 141
+ +L N ++ I + D + L +G L GN+FTI +R + + +++ + S L
Sbjct: 147 LKKEQLE--NIKIKDIIIRDVQKTNKKLRMGDLWGNKFTIKIRDLELSKKEIKRIS--DL 202
Query: 142 GRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKE 201
+ +NY+G+QRFG TH+VG + +++SA E + +AR+ +
Sbjct: 203 KLDYVLNYYGIQRFGLVRPITHIVGKFIYERDFESAFYTYCGTPISETGDSLEARQLV-D 261
Query: 202 TDDIDGTLRKLPR-HLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
+ L+ R H +R I Q LK ++ A A+P L M+V++YQ++L+N
Sbjct: 262 MGEFKKALKLFNRNHDYEKRLIQQYLK--YKDFKMAFTALPPQLNSMFVNAYQAYLFNEM 319
Query: 261 ASARV 265
+ R
Sbjct: 320 INERF 324
>gi|380791505|gb|AFE67628.1| pseudouridylate synthase 7 homolog-like protein, partial [Macaca
mulatta]
Length = 463
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 89/158 (56%), Gaps = 9/158 (5%)
Query: 34 FHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKR 93
F L KEN + EA+G ++ LG++P F +AG KDK++++ Q + V K +L + K
Sbjct: 305 FTLRKENLEMFEAIGFLAIKLGVIPSDFSYAGLKDKKAITYQAMVVRKVTPERLKNIEKE 364
Query: 94 LIGIRLGDFCY--VKEGLLLGQLLGNRFTITLRGV---VVDSEDV---IKASANSLGRNG 145
+ R+ F V + L LGQL GN F I +R + + DS ++ I + ++ + G
Sbjct: 365 IEKKRMNVFNIRSVDDSLRLGQLKGNHFDIVIRNLKKQINDSANLRERIMEAIENVKKKG 424
Query: 146 FINYFGLQRFGSG-SVPTHLVGATLLRGEWKSAVKMIL 182
F+NY+G QRFG G V T +G LL+ E A+K+ L
Sbjct: 425 FVNYYGPQRFGKGRKVHTDQIGLALLKNEMMKAIKLFL 462
>gi|95928233|ref|ZP_01310981.1| Pseudouridylate synthase [Desulfuromonas acetoxidans DSM 684]
gi|95135504|gb|EAT17155.1| Pseudouridylate synthase [Desulfuromonas acetoxidans DSM 684]
Length = 400
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 117/237 (49%), Gaps = 4/237 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G L + K+ T + ++ LGI + FG+AG KD R+++ Q V++ +++
Sbjct: 37 GDHLYLRVEKQGMSTFAMIQRLATALGIKEKEFGYAGLKDSRAITRQLVSLPLIDEARIT 96
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
L+ L GI + + L LG L GNRFTI + GV +E + L + G N
Sbjct: 97 HLD--LEGITILEARRHTNKLRLGHLRGNRFTIRVHGVTQGAEQCALDILHILEQTGVPN 154
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDDIDGT 208
FG QR+G HLVG +L+ ++ A +I+ G NE K + D++
Sbjct: 155 LFGPQRYGVLGT-NHLVGRAILQEHFEEAAALIIGDPAGISNERWKTAATAYRSGDMEQA 213
Query: 209 LRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARV 265
L+ P ER +L L + ++ QA+ A+PR L +++ +YQS L++ + R+
Sbjct: 214 LQAFPGRFRDERRLLHSLLRGQ-SHQQAVLALPRKLLRLFLSAYQSHLFDRQVTMRL 269
>gi|398018179|ref|XP_003862274.1| hypothetical protein, conserved [Leishmania donovani]
gi|322500503|emb|CBZ35580.1| hypothetical protein, conserved [Leishmania donovani]
Length = 669
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 114/417 (27%), Positives = 168/417 (40%), Gaps = 77/417 (18%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
+L+ L+K+ AL I+++L I PRS AG KD + QRV + + S AAL
Sbjct: 64 YLQCTLHKQRMAHGNALAHIAQILRIHPRSISVAGIKDYIGDTVQRVRL--ENVSPAAAL 121
Query: 91 --NKRL----IGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRN 144
N+R + ++L DF Y L+ G L GN F I LR V V V+ + + G N
Sbjct: 122 EANRRFRRKGLRMKLSDFSYETRPLMPGDLFGNHFRIVLRDVSV-PRAVLADAIAAFGEN 180
Query: 145 GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERN---EISKAREYYKE 201
GF NY+G QRF S LLR W + + L+ +R+ + + ++Y
Sbjct: 181 GFPNYYGCQRF-SWFGGKQDAAFALLRHNWLAFAFLFLNYTGKDRSLRELLQRPKKYPHP 239
Query: 202 T-DDIDGTLRKLPRHLVAE---------------RAILQCLKKCPGNYLQALKAIPRTLR 245
T D+ + + RH+ E A+L P N ++ L I LR
Sbjct: 240 TQDEYRRRVVRRLRHIAVEPTDLDVAPFLSCPPLSAVLTHADGRPFNKVEEL--ICTQLR 297
Query: 246 MMY-----------VHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVN 294
Y SFLWN A + R+ G V+ GD+ V
Sbjct: 298 DAYFDLHVQSRRLTAQRLSSFLWNQALTLRLHHVGGARVLDGDM--------------VA 343
Query: 295 PEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLP-LPGSR 353
P + S +D D H VTA N +YTI+DVV P
Sbjct: 344 PAAIRQLSTSVEDRR-----------DWFHTFGDRVTAE--NRHRYTIEDVVHPGFSFDG 390
Query: 354 VIYPMNDVAEVYHHLAEKDGINLT--ESLHNVKEFSITSMTGNYRRVFQKPMDFEWE 408
+ P N V Y + +K G++ S +K+F R + +KP+D +E
Sbjct: 391 IALPQNIVGAYYQQICDKYGLDWMAQHSRSGLKDFREPP-----RPIIRKPLDLSYE 442
>gi|161579521|ref|NP_248367.2| tRNA pseudouridine synthase D [Methanocaldococcus jannaschii DSM
2661]
gi|37154737|sp|Q58759.2|TRUD2_METJA RecName: Full=Probable tRNA pseudouridine synthase D 2; AltName:
Full=tRNA pseudouridine(13) synthase; AltName: Full=tRNA
pseudouridylate synthase D 2; AltName: Full=tRNA-uridine
isomerase D 2
Length = 422
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 83/285 (29%), Positives = 135/285 (47%), Gaps = 28/285 (9%)
Query: 34 FHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRAS-KLAALNK 92
+ L K N ++ +A I+K I + G+ G KD+ +++TQ +++ K+ L N
Sbjct: 55 YKLTKRNIESLKAFSYIAKKFKIPLKDIGYCGLKDRHALTTQYISIPKKYGKLSLDEPNL 114
Query: 93 RLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASAN-SLGRNGFINYFG 151
+L I F LLLG L GNRFTIT+RG+ ED+ K N G NYF
Sbjct: 115 KLELIGESKF------LLLGDLEGNRFTITVRGL--KKEDIPKIKENLKYLEFGAPNYFD 166
Query: 152 LQRFGSGSVPTHLVGATLLRGEWKSAVKMILDP-REGERNEISKAREYY-KETDDIDGTL 209
QRFGS + +++G ++ AVK++L ++ E+ I + + K D D
Sbjct: 167 SQRFGS-VFDKKFIAKEVIKGNYEEAVKILLTKYKKSEKKLIKDLKRFIDKNWGDWDKIW 225
Query: 210 RKLPRHLVAERAILQCLK--KCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQK 267
+ + + R + +K K +Y +AL + L+ ++V +YQS+LWN ++K
Sbjct: 226 EYIKENNIKSRLYVNMVKELKKSNDYKKALSYVDDRLKKIFVAAYQSYLWNECVKELLRK 285
Query: 268 HGTEHVVV------GDLVFCKGDDTE-------KELGCVNPEFEY 299
+ E V G L+F K D E K+ + P+ EY
Sbjct: 286 YVPEEDRVYYEYECGTLMFYKKMDEEVFNILKDKKFPTIAPDIEY 330
>gi|221502179|gb|EEE27917.1| tRNA pseudouridine synthase D, putative [Toxoplasma gondii VEG]
Length = 1818
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 91/203 (44%), Gaps = 46/203 (22%)
Query: 24 WPEQLGKFLRFHLYKENKDTQEALGLISKMLGI-LPRSFGFAGTKDKRSVSTQRVTVFKQ 82
WP LG +L F L K N+DT AL +I + L RS AGTKDKR ++ QR +V K
Sbjct: 869 WPADLGVYLHFILLKVNRDTSNALHMIGRGLRRHCQRSLAVAGTKDKRGITVQRCSVHKV 928
Query: 83 RASKLAALNKRLI-------GIRLGDFCYVKEGLLLGQLLGNRFTITLRG---------- 125
A L LN + + + + LG LLGN F + LR
Sbjct: 929 LAPAL--LNACYLDHPSWDSNVHIAPLGHFSRPQRLGALLGNSFQVVLRNARLPLSATGA 986
Query: 126 --------------------VVVDSEDV------IKASANSLGRNGFINYFGLQRFGSGS 159
V + + V + A ++ GF+NYFGLQRFG+ +
Sbjct: 987 SLPSSLSSSFDGEVPPGFVPVALCDQSVQVLASRVSAGVATISSRGFLNYFGLQRFGTHA 1046
Query: 160 VPTHLVGATLLRGEWKSAVKMIL 182
V T VGA LL+G+WK AV IL
Sbjct: 1047 VRTFEVGAALLQGDWKEAVARIL 1069
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 79/157 (50%), Gaps = 24/157 (15%)
Query: 232 NYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVF--CKGD----- 284
+Y +AL+ IP +YVHS QS L+NHA + R + G + V VGD+V +GD
Sbjct: 1335 DYFRALQGIPADSLQLYVHSAQSVLFNHACTWRWKALGGK-VCVGDVVRVRARGDHRSTL 1393
Query: 285 --------DTEK--ELGCVNPEFEYESSNDAD--DSSHLDEVPETDHPDGRHNLVKTVTA 332
D+ K E V E + ++D D D + + PDG+ VK V
Sbjct: 1394 STSGSTSADSSKRREARQVGRITELDGTDDRFLFDEGQGDGSEDEEEPDGQ--TVK-VIE 1450
Query: 333 ADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLA 369
+ + + +I D+VLPLPG+ ++YP + A VY LA
Sbjct: 1451 TEAEAEQASIYDLVLPLPGADIVYPSHMTA-VYRQLA 1486
>gi|221481767|gb|EEE20143.1| tRNA pseudouridine synthase D, putative [Toxoplasma gondii GT1]
Length = 1818
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 91/203 (44%), Gaps = 46/203 (22%)
Query: 24 WPEQLGKFLRFHLYKENKDTQEALGLISKMLGI-LPRSFGFAGTKDKRSVSTQRVTVFKQ 82
WP LG +L F L K N+DT AL +I + L RS AGTKDKR ++ QR +V K
Sbjct: 869 WPADLGVYLHFILLKVNRDTSNALHMIGRGLRRHCQRSLAVAGTKDKRGITVQRCSVHKV 928
Query: 83 RASKLAALNKRLI-------GIRLGDFCYVKEGLLLGQLLGNRFTITLRG---------- 125
A L LN + + + + LG LLGN F + LR
Sbjct: 929 LAPAL--LNACYLDHPSWDSNVHIAPLGHFSRPQRLGALLGNSFQVVLRNARLPLSATGA 986
Query: 126 --------------------VVVDSEDV------IKASANSLGRNGFINYFGLQRFGSGS 159
V + + V + A ++ GF+NYFGLQRFG+ +
Sbjct: 987 SLPSSLSSSFDGEVPPGFVPVALCDQSVQVLASRVSAGVATISSRGFLNYFGLQRFGTHA 1046
Query: 160 VPTHLVGATLLRGEWKSAVKMIL 182
V T VGA LL+G+WK AV IL
Sbjct: 1047 VRTFEVGAALLQGDWKEAVARIL 1069
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 79/157 (50%), Gaps = 24/157 (15%)
Query: 232 NYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVF--CKGD----- 284
+Y +AL+ IP +YVHS QS L+NHA + R + G + V VGD+V +GD
Sbjct: 1335 DYFRALQGIPADSLQLYVHSAQSVLFNHACTWRWKALGGK-VCVGDVVRVRARGDHRSTL 1393
Query: 285 --------DTEK--ELGCVNPEFEYESSNDAD--DSSHLDEVPETDHPDGRHNLVKTVTA 332
D+ K E V E + ++D D D + + PDG+ VK V
Sbjct: 1394 STSGSTSADSSKRREARQVGRITELDGTDDRFLFDEGQGDGSEDEEEPDGQ--TVK-VIE 1450
Query: 333 ADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLA 369
+ + + +I D+VLPLPG+ ++YP + A VY LA
Sbjct: 1451 TEAEAEQASIYDLVLPLPGADIVYPSHMTA-VYRQLA 1486
>gi|221054253|ref|XP_002261874.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
knowlesi strain H]
gi|193808334|emb|CAQ39037.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
knowlesi strain H]
Length = 1067
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 99/206 (48%), Gaps = 31/206 (15%)
Query: 30 KFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAA 89
K+L F+LYKENKD E L I L + G KDKR ++ QR + K + L
Sbjct: 474 KYLHFNLYKENKDICEVLHKIKINLKKKNGDISYCGIKDKRGITVQRFCIHKAKKFDLFK 533
Query: 90 LNKRLIG-------------------------IRLGDFCYVKEGLLLGQLLGNRFTITLR 124
L ++G + + + Y K+ L LG L GN F + +R
Sbjct: 534 L---IMGGDSDSRDRGGDKSGGRGGSSPWCNNVFVSNLSYRKKKLSLGDLKGNFFKVLIR 590
Query: 125 GVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDP 184
GV SE+ A AN+ + GF+NYFG QRFGS + + +G +L+ +K A+ +++
Sbjct: 591 GVEDTSEEKFCALANNFKKTGFVNYFGHQRFGSKKIKNYEIGICILKKNYKLALFHVIEN 650
Query: 185 REGERNEISKAREYYKETDDIDGTLR 210
E ++ S+ EY E +DGT R
Sbjct: 651 TGLEFSKKSRLIEYLNE---LDGTNR 673
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 84/327 (25%), Positives = 139/327 (42%), Gaps = 51/327 (15%)
Query: 204 DIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASA 263
+I + +P H E+ IL LK + A + + + +++HS QS ++N A
Sbjct: 783 EISEIINSIPSHSHVEKTILFSLKN-DNKFKNAFMNLSKDIFSLFIHSAQSLIFNILADI 841
Query: 264 RVQKHGTEHVVVGDLVFC--KGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPD 321
R+ K+G VVVGDLV + + C + ND D+S + V ET+
Sbjct: 842 RMNKYGF-GVVVGDLVESNPRNEQVVSSDDC--------TENDEDESGSDEAVYETN--- 889
Query: 322 GRHNLVKTVTAADINSGKYTIDDVVLPLPGSR-VIYPMNDVAEVYHHLAEKDGINLTESL 380
V VT +I KY I DVVLPLPG + ++P N + E + +
Sbjct: 890 -----VTLVTNENI--SKYDIYDVVLPLPGDKNFLFPPNLIEE--YKSVLSSLHLSLDDF 940
Query: 381 HNVKEFSITSMTGNYRRVFQKPMDFEWELL---TYIDGNKPLAETDLDKIAKAKLVNIVK 437
+ K F S G YR+V KP F+ + +G P +DL ++ + +
Sbjct: 941 RSEKNF--FSAPGGYRKVVVKPCHFKSLFIKSDAAGEGKIPFIRSDLCRLME-------Q 991
Query: 438 EEEAVCG--NKEKDPSDCMKQSESLSKDIK-LSTENNEAACAKEVKQPHVESVCGADSQG 494
E A G N +P+ + + + I + ++ KEV P+ +
Sbjct: 992 EGAAANGATNSVANPAAITRIPDEIHTHITFVQSDAYHEHLIKEV--PNYRTTA------ 1043
Query: 495 KQMALKLGLTLPSSCYATMAIRELLKT 521
++ L +LP S Y T+A+ E+L +
Sbjct: 1044 ---SVFLTCSLPKSSYITVALLEVLNS 1067
>gi|429963826|gb|ELA45825.1| TruD family tRNA pseudouridine synthase, partial [Vavraia culicis
'floridensis']
Length = 300
Score = 95.5 bits (236), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 141/287 (49%), Gaps = 26/287 (9%)
Query: 34 FHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKR 93
F L KEN+DT EA ISK L + ++ FAG KD+R+++ QRV++ + L+
Sbjct: 19 FVLRKENEDTVEACMRISKELNVPFKNVKFAGNKDRRAITYQRVSINDVYYDNIKHLH-- 76
Query: 94 LIGIRLGDFCYVKEG--LLLGQLLGNRFTITLRGVVVDSE----DVIKASAN-SLGRNGF 146
C +E L LG GNRFTI +R SE + A N L
Sbjct: 77 ---------CVRRERGYLKLGGFKGNRFTIMVRPKENSSETGDCSLDDAVMNMDLNMKMV 127
Query: 147 INYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDDID 206
N+FG QRFG ++ HLVG + +++ AV +I+ + + + + +A++ + + D
Sbjct: 128 PNFFGPQRFGR-NLNNHLVGKLIQEKKYEDAVNLIMMAEKNDGDYVKEAKQSF-HNKEYD 185
Query: 207 GTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARV- 265
+ P++ +AE++I + + + Y A+ +I +R+ Y+H+YQS+++N S +
Sbjct: 186 KAYAQFPKNCLAEKSICRNITR---GYKYAVFSIKEKIRVFYLHAYQSYVFNQELSKLLG 242
Query: 266 --QKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSH 310
+ E V+ G V K +EL C +Y+ + SS+
Sbjct: 243 GKYEVNEELVLKGSKVKRKAFTEIRELACKKKGNDYQFTFTLGPSSY 289
>gi|237832423|ref|XP_002365509.1| hypothetical protein TGME49_064190 [Toxoplasma gondii ME49]
gi|211963173|gb|EEA98368.1| hypothetical protein TGME49_064190 [Toxoplasma gondii ME49]
Length = 1818
Score = 95.5 bits (236), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 91/203 (44%), Gaps = 46/203 (22%)
Query: 24 WPEQLGKFLRFHLYKENKDTQEALGLISKMLGI-LPRSFGFAGTKDKRSVSTQRVTVFKQ 82
WP LG +L F L K N+DT AL +I + L RS AGTKDKR ++ QR +V K
Sbjct: 869 WPADLGVYLHFILLKVNRDTSNALHMIGRGLRRHCQRSLAVAGTKDKRGITVQRCSVHKV 928
Query: 83 RASKLAALNKRLI-------GIRLGDFCYVKEGLLLGQLLGNRFTITLRG---------- 125
A L LN + + + + LG LLGN F + LR
Sbjct: 929 LAPAL--LNACYLDHPSWDSNVHIAPLGHFSRPQRLGALLGNSFQVVLRNARLPLSATGA 986
Query: 126 --------------------VVVDSEDV------IKASANSLGRNGFINYFGLQRFGSGS 159
V + + V + A ++ GF+NYFGLQRFG+ +
Sbjct: 987 SLPSSLSSSFDGEVPPGFVPVALCDQSVQVLASRVSAGVATISSRGFLNYFGLQRFGTHA 1046
Query: 160 VPTHLVGATLLRGEWKSAVKMIL 182
V T VGA LL+G+WK AV IL
Sbjct: 1047 VRTFEVGAALLQGDWKEAVARIL 1069
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 79/157 (50%), Gaps = 24/157 (15%)
Query: 232 NYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVF--CKGD----- 284
+Y +AL+ IP +YVHS QS L+NHA + R + G + V VGD+V +GD
Sbjct: 1335 DYFRALQGIPADSLQLYVHSAQSVLFNHACTWRWKALGGK-VCVGDVVRVRARGDHRSTL 1393
Query: 285 --------DTEK--ELGCVNPEFEYESSNDAD--DSSHLDEVPETDHPDGRHNLVKTVTA 332
D+ K E V E + ++D D D + + PDG+ VK V
Sbjct: 1394 STSGSTSADSSKRREARQVGRITELDGTDDRFLFDEGQGDGSEDEEEPDGQ--TVK-VIE 1450
Query: 333 ADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLA 369
+ + + +I D+VLPLPG+ ++YP + A VY LA
Sbjct: 1451 TEAEAEQASIYDLVLPLPGADIVYPSHMTA-VYRQLA 1486
>gi|1592008|gb|AAB99372.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
2661]
Length = 487
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 83/285 (29%), Positives = 135/285 (47%), Gaps = 28/285 (9%)
Query: 34 FHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRAS-KLAALNK 92
+ L K N ++ +A I+K I + G+ G KD+ +++TQ +++ K+ L N
Sbjct: 120 YKLTKRNIESLKAFSYIAKKFKIPLKDIGYCGLKDRHALTTQYISIPKKYGKLSLDEPNL 179
Query: 93 RLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASAN-SLGRNGFINYFG 151
+L I F LLLG L GNRFTIT+RG+ ED+ K N G NYF
Sbjct: 180 KLELIGESKF------LLLGDLEGNRFTITVRGL--KKEDIPKIKENLKYLEFGAPNYFD 231
Query: 152 LQRFGSGSVPTHLVGATLLRGEWKSAVKMILDP-REGERNEISKAREYY-KETDDIDGTL 209
QRFGS + +++G ++ AVK++L ++ E+ I + + K D D
Sbjct: 232 SQRFGS-VFDKKFIAKEVIKGNYEEAVKILLTKYKKSEKKLIKDLKRFIDKNWGDWDKIW 290
Query: 210 RKLPRHLVAERAILQCLK--KCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQK 267
+ + + R + +K K +Y +AL + L+ ++V +YQS+LWN ++K
Sbjct: 291 EYIKENNIKSRLYVNMVKELKKSNDYKKALSYVDDRLKKIFVAAYQSYLWNECVKELLRK 350
Query: 268 HGTEHVVV------GDLVFCKGDDTE-------KELGCVNPEFEY 299
+ E V G L+F K D E K+ + P+ EY
Sbjct: 351 YVPEEDRVYYEYECGTLMFYKKMDEEVFNILKDKKFPTIAPDIEY 395
>gi|18313848|ref|NP_560515.1| hypothetical protein PAE3134 [Pyrobaculum aerophilum str. IM2]
gi|37089561|sp|Q8ZTR2.1|TRUD_PYRAE RecName: Full=Probable tRNA pseudouridine synthase D; AltName:
Full=tRNA pseudouridine(13) synthase; AltName: Full=tRNA
pseudouridylate synthase D; AltName: Full=tRNA-uridine
isomerase D
gi|18161412|gb|AAL64697.1| conserved hypothetical protein [Pyrobaculum aerophilum str. IM2]
Length = 413
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 99/418 (23%), Positives = 174/418 (41%), Gaps = 70/418 (16%)
Query: 27 QLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASK 86
++G + H+ K N DT + + +++ LG+ R G KD ++V++Q ++V
Sbjct: 56 RVGNWTWIHVVKRNVDTIKLVLRLARALGLSHRDVSVGGLKDTKAVTSQIISV----RGP 111
Query: 87 LAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGF 146
+A L + L G++ + + + Q+ GNRFTI LR V+ + + +L +
Sbjct: 112 VANLPQ-LPGVQFLGMWSMDKPITPSQIYGNRFTIILRD--VERISCAEGALEALKKTAA 168
Query: 147 INYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDDID 206
NY+G QRFG+ THL+G LL+ + +++ +E++K D
Sbjct: 169 PNYYGYQRFGTIRPVTHLLGKALLKKDPHLFFEVMFCKIFSRESEVAKRAREAACKGDYA 228
Query: 207 GTLRKLPRHLVAERAILQCLKKCPGNY--LQALKAIPRTLRMMYVHSYQSFLWNHAASAR 264
L P+ V ER LK+ G Y A+ AIP + +Y+ + QS+++N S R
Sbjct: 229 KALELFPKKFVEERVF---LKRLAGGYDMWNAIMAIPPQILRVYIEAAQSYIFNRFLSIR 285
Query: 265 VQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRH 324
++ + V GDLV +N + Y +
Sbjct: 286 MEIGPIDRPVEGDLV------------EINRQIAYYAEGLG------------------- 314
Query: 325 NLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVK 384
+VVLP+ G+ V P V E + ++G++ + L +
Sbjct: 315 ------------------GEVVLPVVGAGVRMPRGKVGEALLRVLREEGLDPSAFLKMPR 356
Query: 385 EFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDK--IAKAKLVNIVKEEE 440
+ G YRRV +P FE++++ GN + L + A L +VK E
Sbjct: 357 GLRV---YGTYRRVRLEPAGFEYKIM----GNDVFMQFTLPRGSYATVLLREVVKPAE 407
>gi|294942248|ref|XP_002783450.1| tRNA pseudouridine synthase D, putative [Perkinsus marinus ATCC
50983]
gi|239895905|gb|EER15246.1| tRNA pseudouridine synthase D, putative [Perkinsus marinus ATCC
50983]
Length = 687
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 85/279 (30%), Positives = 116/279 (41%), Gaps = 60/279 (21%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
GK R L+K N DT L ++ K L + S +AG KDKR ++
Sbjct: 332 GKRWRCVLHKANLDTPRVLAMLEKKLRLPRESIHYAGLKDKRGLTYH------------- 378
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
N F I LRGV S ++ SL + GFIN
Sbjct: 379 ----------------------------NCFRIRLRGVEPGSSSAVE----SLRKTGFIN 406
Query: 149 YFGLQRFG----SGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDD 204
YFGLQRFG G+ GA ++ ++ AV+ L P + +E ++ R + ET D
Sbjct: 407 YFGLQRFGWDKGDGASSHVYTGAAIITRDFNRAVRSYLRPLADDISEDAQIRRAWLETGD 466
Query: 205 IDGTLRKLP-------RHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLW 257
L R + RA+L L C A+ IP+TL + SY S LW
Sbjct: 467 AHKAAEALAKASTRDNRDISLYRAMLLELATCRDKGRHAMMLIPKTLWHLLAASYVSCLW 526
Query: 258 NHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPE 296
N AS R+++ G V VGDLV D T +EL + E
Sbjct: 527 NRLASQRIREGGL-RVTVGDLV---EDPTSRELRLIRSE 561
>gi|146092088|ref|XP_001470203.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|134084997|emb|CAM69396.1| conserved hypothetical protein [Leishmania infantum JPCM5]
Length = 669
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 113/417 (27%), Positives = 167/417 (40%), Gaps = 77/417 (18%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
+L+ L+K+ AL I+++L I PRS AG KD + QRV + + S AAL
Sbjct: 64 YLQCTLHKQRMAHGNALAHIAQILRIHPRSISVAGIKDYIGDTVQRVRL--ENVSPAAAL 121
Query: 91 --NKRL----IGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRN 144
N+R + ++L DF Y L+ G L GN F I LR V V V+ + + G N
Sbjct: 122 EANRRFRRKGLRMKLSDFSYETRPLMPGDLFGNHFRIVLRDVSV-PRAVLADAIAAFGEN 180
Query: 145 GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERN---EISKAREYYKE 201
GF NY+G QRF S LLR W + + L+ +R+ + + ++Y
Sbjct: 181 GFPNYYGCQRF-SWFGGKQDAAFALLRHNWLAFAFLFLNYTGQDRSLRELLQRPKKYPHP 239
Query: 202 T-DDIDGTLRKLPRHLVAE---------------RAILQCLKKCPGNYLQALKAIPRTLR 245
T D+ + + RH+ E A+L P N ++ L I LR
Sbjct: 240 TQDEYRRRVVRRLRHIAVEPTDLDVAPFLSCPPLSAVLTHADGRPFNKVEEL--ICTQLR 297
Query: 246 MMY-----------VHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVN 294
Y SFLWN + R+ G V+ GD+ V
Sbjct: 298 DAYFDLHVQSRRLTAQRLSSFLWNQVLTLRLHHVGGARVLDGDM--------------VA 343
Query: 295 PEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLP-LPGSR 353
P + S +D D H VTA N +YTI+DVV P
Sbjct: 344 PAAIRQLSTSVEDRR-----------DWFHTFGDRVTAE--NRHRYTIEDVVHPGFSFDG 390
Query: 354 VIYPMNDVAEVYHHLAEKDGINLT--ESLHNVKEFSITSMTGNYRRVFQKPMDFEWE 408
+ P N V Y + +K G++ S +K+F R + +KP+D +E
Sbjct: 391 IALPQNIVGAYYQQICDKYGLDWMAQHSRSGLKDFREPP-----RPIIRKPLDLSYE 442
>gi|290559819|gb|EFD93143.1| putative tRNA pseudouridine synthase D [Candidatus Parvarchaeum
acidophilus ARMAN-5]
Length = 398
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 128/254 (50%), Gaps = 18/254 (7%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
FL F L K T EA+ +S+ L I + + G KDKR++++Q++++FK A L
Sbjct: 56 FLTFTLVKRGVSTPEAVKSLSRNLHISFKRIAYNGNKDKRALTSQKMSIFKFDAENLKFS 115
Query: 91 NKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYF 150
R I + D Y + +G+L GN FT+ +R +++D+ K + G N++
Sbjct: 116 TDR---IFIRDLAYSNDPCKIGKLYGNHFTVKVRDFNDNNKDLDKLKEEII--KGIPNFY 170
Query: 151 GLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDDIDGT-- 208
G QRFGS S+ V ++L+ ++K+A +++ E + R+ +ET ++D T
Sbjct: 171 GPQRFGSSSLNIE-VSKSILKKDFKTAFFLLVLKERAESKLNAYKRKGLRETINLDDTNN 229
Query: 209 ---------LRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNH 259
L LP + E+ + L + +Y A++ +P+ R++ + ++Q +++N
Sbjct: 230 LDREKIKEVLASLPGFMYFEKESIAYLLEHKNDYAGAIRLMPKYSRLIILQAFQYYVFNQ 289
Query: 260 AASARVQKHGTEHV 273
S + K G + +
Sbjct: 290 TLS-ELLKEGYDEI 302
>gi|294868672|ref|XP_002765637.1| tRNA pseudouridine synthase D, putative [Perkinsus marinus ATCC
50983]
gi|239865716|gb|EEQ98354.1| tRNA pseudouridine synthase D, putative [Perkinsus marinus ATCC
50983]
Length = 1735
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 86/277 (31%), Positives = 133/277 (48%), Gaps = 45/277 (16%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G RF L K DT I + L + S FAG KDK V+ F++
Sbjct: 330 GSRWRFTLMKAGWDTTAIQRAIERELDLPKDSMHFAGVKDKFGVTYH----FER-----T 380
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+N +R G L GN F + +R V +++ ++AS L GFIN
Sbjct: 381 EVNGGTTELR------------HGMLSGNCFRLRIRDVEGGADEKVRAS--KLADTGFIN 426
Query: 149 YFGLQRFGSGSVPTH--------LVGATLLRGEWKSAVKMILDPREGERNEISKAREYYK 200
Y+GLQRFG P H +GA L+ G+++ A K+IL P ++ +++ ++
Sbjct: 427 YYGLQRFGIN--PHHDESRHNNVDIGAALVSGDYEKAAKLILTPAGCDKRKVADILREWQ 484
Query: 201 ETDD---IDGTLRKL---PRHLVAERAILQCLKKCP--GNYLQALKA-IPRTLRMMYVHS 251
ET + + LRK+ R + ++ + P Y AL+A +PR L +++ +
Sbjct: 485 ETGESSVVAERLRKVRSRDRDVEMWSRMMSAIVASPTVDGYRGALRAGVPRALLQIHLLA 544
Query: 252 YQSFLWNHAASARVQKHGTEHVVVGDLVFC--KGDDT 286
YQS LWN AS R++++G E VV D+V+C KGD T
Sbjct: 545 YQSCLWNRMASRRIRENGLE-VVESDVVWCKEKGDIT 580
>gi|298711451|emb|CBJ32590.1| pseudouridine synthase [Ectocarpus siliculosus]
Length = 579
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 98/194 (50%), Gaps = 11/194 (5%)
Query: 16 FDSRGSE-NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVST 74
F+ R S +WP+ G++L F +YK + T E + + L I +AG KD+R+++
Sbjct: 269 FEKRKSRASWPKGRGEYLEFSVYKAGRSTSEVAEALCQRLYIKRARLSYAGAKDRRALTA 328
Query: 75 QRVTVFKQRASKLAALNKRLI----GIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDS 130
Q++ ++ A + + + G+ + D+ YV+ L LG L GN F + LR S
Sbjct: 329 QKMRCWRLPAEAIHEAHADGLLSQDGLAVSDYRYVETDLSLGGLKGNHFDVLLR---PPS 385
Query: 131 EDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERN 190
+ A R GF+N+FG QRFG VG LL G+W +A+ I+ P +
Sbjct: 386 GGWGRGEA---AREGFVNFFGEQRFGRDGTNNLDVGLLLLEGDWPAAIDRIMAPHPADSA 442
Query: 191 EISKAREYYKETDD 204
+S+A+E + + D
Sbjct: 443 MVSEAKEAFFDGRD 456
Score = 45.1 bits (105), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 327 VKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGI-NLTESLHNVKE 385
V VTA +G +TI VVLPLPG+ V++P+N V E ++DG+ ++ + H K
Sbjct: 495 VVRVTAEAARAGVFTIKHVVLPLPGNSVMFPLNPVGEEMLVSLKQDGVDDVILNGHPQKA 554
Query: 386 FSITSMTGNYRRVF 399
F + G YR V
Sbjct: 555 F---DLEGAYRHVM 565
>gi|294953207|ref|XP_002787648.1| tRNA pseudouridine synthase D, putative [Perkinsus marinus ATCC
50983]
gi|239902672|gb|EER19444.1| tRNA pseudouridine synthase D, putative [Perkinsus marinus ATCC
50983]
Length = 384
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 128/254 (50%), Gaps = 14/254 (5%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
F++ + K +TQ + L++ P +AG KD+ + +TQ +T+ ++ +
Sbjct: 104 FVQLTVQKYLVETQSVVQLLAHHAECAPEDISYAGRKDEHADTTQLITMPQEAFLRFFRK 163
Query: 91 NKRL-IGIRLGDFCYVKEGLLLGQLLGNRFTITLRG--VVVDSEDVIKASANSLGRNGFI 147
+++L + R+GD V+ L L L GN F + G V++SE A+ + GF+
Sbjct: 164 HRQLRLPFRIGDPLGVERALKLSDLSGNHFRLVFTGDSRVIESE-AHDAALARIAEGGFV 222
Query: 148 NYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPR-EGERNEISKAREYYKETDDID 206
NYFG QRFGS T +VG L G + AV +L + E RN++SK +
Sbjct: 223 NYFGPQRFGSPRYMTPVVGWHLNTGRVEEAVMALLASQGEPSRNDVSKK----ILGKNFK 278
Query: 207 GTLRKLPRHLVA--ERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASAR 264
R LP + + + +++ + K P + IP +L Y ++++S LWN+ SAR
Sbjct: 279 SLQRNLPEDVSSRDDHHLIEAIVKYPKRLWRT--KIPASLWSTYNNAFESLLWNYVVSAR 336
Query: 265 VQKHGTEHVVVGDL 278
++++G + V GDL
Sbjct: 337 IERYGMKG-VAGDL 349
>gi|389846100|ref|YP_006348339.1| tRNA pseudouridine synthase D [Haloferax mediterranei ATCC 33500]
gi|448616283|ref|ZP_21664993.1| tRNA pseudouridine synthase D [Haloferax mediterranei ATCC 33500]
gi|388243406|gb|AFK18352.1| tRNA pseudouridine synthase D [Haloferax mediterranei ATCC 33500]
gi|445750938|gb|EMA02375.1| tRNA pseudouridine synthase D [Haloferax mediterranei ATCC 33500]
Length = 452
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 86/265 (32%), Positives = 125/265 (47%), Gaps = 33/265 (12%)
Query: 42 DTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGI--RL 99
DT + G +S LG+ +AGTKDK +V+TQ TV A + + I + RL
Sbjct: 69 DTNDFAGRLSDELGVSRERVSWAGTKDKHAVTTQLFTVHGGDADNVPEIPNADIEVVGRL 128
Query: 100 GDFCYVKEGLLLGQLLGNRFTITLRGVVVDSE--DVIKASANSL----GRN---GFINYF 150
G L G L GN F I +R D E + A +SL GR+ G N+F
Sbjct: 129 G------RTLDFGDLAGNGFRIRVR----DPERPENTAAITDSLREFSGRDDVVGVPNFF 178
Query: 151 GLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYYKE-----TDD 204
G QRFGS TH VG ++RGEW+ AV P E E E + R E D
Sbjct: 179 GHQRFGSIRPITHTVGLHVIRGEWREAVLAYCGGPTEDEPEETQEGRAVVNEEAESADPD 238
Query: 205 IDGTLRKLPRHLVAERAILQCL----KKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
L ++P +L ER +L L + ++ AL+++P L+ ++V++ QS+ +N
Sbjct: 239 WHRALDRIPGYLGYERGMLHRLAEDGAETDADWRNALESVPSNLQRLFVNAAQSYAFNRM 298
Query: 261 ASARVQKH-GTEHVVVGDLVFCKGD 284
S R+ + + V GD+V C D
Sbjct: 299 LSERLDRGLPFDEPVEGDVV-CFAD 322
>gi|159484528|ref|XP_001700308.1| predicted protein [Chlamydomonas reinhardtii]
gi|158272475|gb|EDO98275.1| predicted protein [Chlamydomonas reinhardtii]
Length = 185
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 65/106 (61%), Gaps = 6/106 (5%)
Query: 42 DTQEALGLISKMLGILP--RSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRL 99
DTQ AL L+SK G+ P FGFAGTKDKR ++TQ VT FK AS+LA LN RL G+RL
Sbjct: 2 DTQVALSLVSKFAGLGPGGNCFGFAGTKDKRGITTQFVTAFKVPASRLAPLNSRLRGMRL 61
Query: 100 GDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNG 145
GD+ Y GL LG L GN F + +R D + SA + R G
Sbjct: 62 GDWSYAAAGLRLGALGGNTFELLMR----DPSSAAQHSATRIRRYG 103
Score = 42.4 bits (98), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 344 DVVLPLP--GSRVIYPMNDVAEVYHHLAEKDGINL------TESLHNVKEFSITSMTGNY 395
D+VLPLP G+ V+YP +D A G+ L + E S+ S++G+Y
Sbjct: 110 DLVLPLPAAGAGVVYPAHDTGAFIREAAAAAGVYLDRPSSAPSAAAAPHELSLASLSGDY 169
Query: 396 RRVFQKPMDFEWEL 409
RR+ +P E+
Sbjct: 170 RRLLIRPRHLEYSF 183
>gi|349604168|gb|AEP99794.1| Pseudouridylate synthase 7-like protein-like protein, partial
[Equus caballus]
Length = 154
Score = 92.8 bits (229), Expect = 4e-16, Method: Composition-based stats.
Identities = 59/193 (30%), Positives = 86/193 (44%), Gaps = 58/193 (30%)
Query: 340 YTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVF 399
Y+I DVV+PLPG VIYP + ++E Y + D +++ H ++++ S++G YR+V
Sbjct: 15 YSIHDVVMPLPGFDVIYPKHKISEAYREMLTADNLDIDNMRHKIRDY---SLSGAYRKVV 71
Query: 400 QKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSES 459
+P + WE++ Y D PL TD+D +
Sbjct: 72 IRPQNVSWEVVAYDDPKIPLFNTDVDNL-------------------------------- 99
Query: 460 LSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELL 519
E K P V + S+GK ALK+ LP S YATMAIRE+L
Sbjct: 100 ------------------EGKPPPVFA-----SEGKYRALKMDFALPPSTYATMAIREVL 136
Query: 520 KTSTSVAFHKTLN 532
K TS+ LN
Sbjct: 137 KMDTSIKNQTQLN 149
>gi|401425038|ref|XP_003877004.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322493248|emb|CBZ28533.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 852
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 113/417 (27%), Positives = 168/417 (40%), Gaps = 77/417 (18%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
+L+ L+K++ AL I+++L I PRS AG KD + QRV + + S AAL
Sbjct: 247 YLQCTLHKQHMAHGHALAHIAQVLRIHPRSISVAGIKDYIGDTVQRVRL--ENVSPAAAL 304
Query: 91 --NKRL----IGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRN 144
N+R + ++L DF Y L+ G L GN F + LR V V V+ + + G N
Sbjct: 305 EANRRFRRKGLQMKLSDFSYETRPLVPGDLFGNHFRVVLRDVSV-PRAVLADAIAAFGEN 363
Query: 145 GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNE---ISKAREYYKE 201
GF NY+G QRF S LLR W + + L+ +R+ + + R+Y
Sbjct: 364 GFPNYYGCQRF-SWFGGRQDAAFALLRHNWLAFAFLFLNYTGKDRSLRELLQRPRKYPHP 422
Query: 202 TDD--------------IDGTLRKLPRHLVAE--RAILQCLKKCPGNYLQALKAIPRTLR 245
T D ++ T + L A+L P N ++ L I LR
Sbjct: 423 TQDEYRRRVVRRLRQIAVEPTDLDVAPFLSCPPLSAVLTHADGQPFNKVEEL--ICAQLR 480
Query: 246 MMYVHSYQ-----------SFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVN 294
Y ++ SFLWN A + R+ G ++ GD+ V
Sbjct: 481 DAYFDLHEQSRRLTGQRLSSFLWNQALTLRLHHVGGTRMLDGDM--------------VA 526
Query: 295 PEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLP-LPGSR 353
P S DD D H VTA N +YTI+DVV P
Sbjct: 527 PAAIRRLSTSVDDRR-----------DWFHIFGDRVTAE--NRHRYTIEDVVHPGFSFDG 573
Query: 354 VIYPMNDVAEVYHHLAEKDGINLT--ESLHNVKEFSITSMTGNYRRVFQKPMDFEWE 408
+ P N V Y + +K G++ S +K+F R + +KP+D +E
Sbjct: 574 IALPQNIVGAYYKQICDKYGLDWMAQHSRSGLKDFREPP-----RPIIRKPLDLSYE 625
>gi|157871792|ref|XP_001684445.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|68127514|emb|CAJ05495.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 848
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 112/417 (26%), Positives = 163/417 (39%), Gaps = 77/417 (18%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
+L+ L+K++ AL I+++L I PRS AG KD + QRV + + S AAL
Sbjct: 243 YLQCTLHKQHMAHGNALAHIAQILRIHPRSISVAGIKDYIGDTVQRVRL--ENVSPAAAL 300
Query: 91 ------NKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRN 144
++ + ++L DF Y L+ G L GN F I LR V V V+ + + G N
Sbjct: 301 EANRHFRRKGLHMKLSDFSYETRPLMPGDLFGNHFRIVLRDVSV-PRAVLADAIAAFGEN 359
Query: 145 GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL---DPREGERNEISKAREYYKE 201
GF NY+G QRF S LLR W + + L D R + + ++Y
Sbjct: 360 GFPNYYGCQRF-SWFGGKQDAAFALLRHNWLAFAFLFLNYTDKDRSLRELLQRPKKYPHP 418
Query: 202 TDD--------IDGTLRKLPRHLVAE--------RAILQCLKKCPGNYLQALKAIPRTLR 245
T D + P L A A+L P N ++ L I LR
Sbjct: 419 TQDEYRRRVVRRLRQIAVEPTDLDAAPFLSCPPLSAVLTHTDGQPFNKVEEL--ICAQLR 476
Query: 246 MMY-----------VHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVN 294
Y SFLWN A + R+ G V+ GD+ V
Sbjct: 477 DAYFDLHVQSRRLTAQRLSSFLWNQALTLRLHHVGGARVLDGDM--------------VA 522
Query: 295 PEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLP-LPGSR 353
P + S +D D H VTA N +YTI+DVV P
Sbjct: 523 PAAIRQLSTSVEDRR-----------DWFHTFGDRVTAE--NRHRYTIEDVVHPGFSFDG 569
Query: 354 VIYPMNDVAEVYHHLAEKDGINLT--ESLHNVKEFSITSMTGNYRRVFQKPMDFEWE 408
+ P N V Y + +K G++ S +K+F R + +KP++ +E
Sbjct: 570 IALPQNIVGAYYQQICDKYGLDWMAQHSRSGLKDFREPP-----RPIVRKPLELSYE 621
>gi|385802656|ref|YP_005839056.1| tRNA pseudouridine synthase D [Haloquadratum walsbyi C23]
gi|339728148|emb|CCC39274.1| tRNA pseudouridine(13) synthase TruD [Haloquadratum walsbyi C23]
Length = 484
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 85/306 (27%), Positives = 136/306 (44%), Gaps = 49/306 (16%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
LR L K DT + + +S L I +AGTKDK +++TQ ++ +++
Sbjct: 58 LLRVTLSK--WDTNDFVQQLSDNLEISRERVSWAGTKDKYAITTQLFSI-----ARINPN 110
Query: 91 NKRLIGIRLGD---FCYVKEGLLLGQLLGNRFTITLRGV----VVD-------------- 129
NK L I D + L G L GN F I +R VVD
Sbjct: 111 NKSLTAIPNADIEVLGRIGRPLQFGDLGGNSFEICVRRATDTSVVDAITAELHAYTVSNN 170
Query: 130 ------SEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAV-KMIL 182
++ V AN + F NYFG QRFGS TH VG ++R W+ AV + +
Sbjct: 171 HSQDDDTQSVYAGDANKVS-IAFPNYFGHQRFGSRRPITHRVGRAIVRNAWRDAVLQYVA 229
Query: 183 DPREGERNEISKAREYYKET-----DDIDGTLRKLPRHLVAERAILQCLKKCPGN----- 232
+ E E +ARE+ E D + + ++P L E+++L L + N
Sbjct: 230 NSFESEPETTQRAREFVSEQAGSSRPDWEEAIERMPNALRFEQSMLHRLNEANANIDSDA 289
Query: 233 --YLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEH-VVVGDLVFCKGDDTEKE 289
+ AL A+P+ L+ ++V++ QS L+N S R++ H + GD+V + ++ E
Sbjct: 290 ATWRHALMAVPKNLQRLFVNAAQSDLFNRIISERLRHDIPIHRPIAGDIVCFQDQNSPTE 349
Query: 290 LGCVNP 295
+ +P
Sbjct: 350 VIRPDP 355
>gi|333910984|ref|YP_004484717.1| tRNA pseudouridine synthase D TruD [Methanotorris igneus Kol 5]
gi|333751573|gb|AEF96652.1| tRNA pseudouridine synthase D TruD [Methanotorris igneus Kol 5]
Length = 400
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 78/292 (26%), Positives = 138/292 (47%), Gaps = 30/292 (10%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRAS-KL 87
G++ + L K N + +AL I+K I + G+ G KD+ +++TQ +T+ K+ KL
Sbjct: 26 GEYYLYKLTKRNIENLKALSYIAKKFKIPLKEIGYCGLKDRHALTTQYITIPKKYGILKL 85
Query: 88 AALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRN-GF 146
N +L ++ L +G L+GNRF IT+R + SED +K + N + G
Sbjct: 86 DEKNLKL------EYVAPSNPLKIGDLIGNRFNITVRS--IKSEDFLKIADNIHALDYGV 137
Query: 147 INYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDP-REGERNEISKAREYY-KETDD 204
NYF QRFGS + ++ G ++ A+K++L ++ E+ I + Y K D
Sbjct: 138 PNYFDSQRFGS-VFERKFIAKEIMLGNYEEALKILLTKYKKSEKKTIKDLKRYIAKNWGD 196
Query: 205 IDGTLRKLPRHLVAERA---ILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAA 261
+ + + ++ + R I+ L K +Y + K + LR ++V +YQS+LWN
Sbjct: 197 WEKCAKYIEKNDIKSRMFVNIINALNK-GKSYKEVFKYVDDRLRKIFVSAYQSYLWNECI 255
Query: 262 SARVQKHGTE------HVVVGDLVFCKGDDTEK-------ELGCVNPEFEYE 300
++ + E GD +F K D + + + P+ EY+
Sbjct: 256 KEVLKDYVNEKDRYYLEYECGDFMFYKELDEDSFNALKDVKFPTIAPDVEYK 307
>gi|110667248|ref|YP_657059.1| tRNA pseudouridine synthase D [Haloquadratum walsbyi DSM 16790]
gi|109624995|emb|CAJ51410.1| tRNA pseudouridine(13) synthase TruD [Haloquadratum walsbyi DSM
16790]
Length = 484
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 84/306 (27%), Positives = 135/306 (44%), Gaps = 49/306 (16%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
LR L K DT + + +S L I +AGTKDK +++TQ ++ +++
Sbjct: 58 LLRVTLSK--WDTNDFVQQLSDNLEISRERVSWAGTKDKYAITTQLFSI-----ARINPN 110
Query: 91 NKRLIGIRLGD---FCYVKEGLLLGQLLGNRFTITLRGV----VVD-------------- 129
NK L I D + L G L GN F I +R VVD
Sbjct: 111 NKSLTAIPNADIEVLGRIGRPLQFGDLGGNSFEICVRSATDTSVVDAITAELHAYTVSNN 170
Query: 130 ------SEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAV-KMIL 182
++ V N + F NYFG QRFGS TH VG ++R W+ AV + +
Sbjct: 171 HSQDDDTQSVYAGDTNKVS-IAFPNYFGHQRFGSRRPITHRVGRAIVRNAWRDAVLQYVA 229
Query: 183 DPREGERNEISKAREYYKET-----DDIDGTLRKLPRHLVAERAILQCLKKCPGN----- 232
+ E E +ARE+ E D + + ++P L E+++L L + N
Sbjct: 230 NSFESEPETTQRAREFASEQAGSSRPDWEEAIERMPNALRFEQSMLHRLNEANANIDSDA 289
Query: 233 --YLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEH-VVVGDLVFCKGDDTEKE 289
+ AL A+P+ L+ ++V++ QS L+N S R++ H + GD+V + ++ E
Sbjct: 290 ATWRHALMAVPKNLQRLFVNAAQSDLFNRIISERLRHDIPIHRPIAGDIVCFQDQNSPTE 349
Query: 290 LGCVNP 295
+ +P
Sbjct: 350 VIRPDP 355
>gi|145591885|ref|YP_001153887.1| pseudouridylate synthase [Pyrobaculum arsenaticum DSM 13514]
gi|189036639|sp|A4WLG8.1|TRUD_PYRAR RecName: Full=Probable tRNA pseudouridine synthase D; AltName:
Full=tRNA pseudouridine(13) synthase; AltName: Full=tRNA
pseudouridylate synthase D; AltName: Full=tRNA-uridine
isomerase D
gi|145283653|gb|ABP51235.1| Pseudouridylate synthase [Pyrobaculum arsenaticum DSM 13514]
Length = 413
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/258 (29%), Positives = 120/258 (46%), Gaps = 10/258 (3%)
Query: 27 QLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASK 86
++G + H+ K N DT + ++K LG+ PR G KD R+V++ ++V
Sbjct: 56 RVGGWTWIHVVKRNVDTIRLMIRLAKALGVSPREVSVGGIKDTRAVASHIISV----RGA 111
Query: 87 LAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGF 146
+ L + + G++ + + ++ GNRFTI LR V+ D + +L
Sbjct: 112 VKGLPE-IPGVKFLGMWSMDRPMSPSEIYGNRFTIVLRD--VERVDCAVEALEALKSAAV 168
Query: 147 INYFGLQRFGSGSVPTHLVGATLLRGEWKSAV-KMILDPREGERNEISKAREYYKETDDI 205
NY+G QRFG+ +HL+G LLR + M E E KARE +
Sbjct: 169 PNYYGYQRFGTIRPVSHLLGRALLRKSPEEFFDAMFCKIFEHESAAAKKARE-LACRGEY 227
Query: 206 DGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARV 265
L PR V ERA L+ L + + A+ IP + +YV + QS+L+N SAR+
Sbjct: 228 QKALETFPRRFVEERAFLRRLAQG-YDMWNAIMGIPLQILRIYVEAAQSYLFNRFLSARL 286
Query: 266 QKHGTEHVVVGDLVFCKG 283
+ + + GDLV G
Sbjct: 287 ELGPLDKPLEGDLVEVGG 304
>gi|404492351|ref|YP_006716457.1| tRNA pseudouridine 13 synthase [Pelobacter carbinolicus DSM 2380]
gi|91207936|sp|Q3A6I8.1|TRUD_PELCD RecName: Full=tRNA pseudouridine synthase D; AltName: Full=tRNA
pseudouridine(13) synthase; AltName: Full=tRNA
pseudouridylate synthase D; AltName: Full=tRNA-uridine
isomerase D
gi|77544457|gb|ABA88019.1| tRNA pseudouridine 13 synthase [Pelobacter carbinolicus DSM 2380]
Length = 398
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 134/254 (52%), Gaps = 10/254 (3%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L + K T E L +S+ L + R+ G+AG KD ++ + Q ++V A +
Sbjct: 37 GEHLYLEVEKRGMTTFELLKRLSRALQVNERAMGYAGLKDAQATTRQFISVTDCSAEQAL 96
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
AL +L IR+ + L LG L GNRFTIT+R + D+ + + + L G N
Sbjct: 97 AL--QLQDIRILSARRHRNKLRLGHLAGNRFTITIRDIDSDALEKARDILHVLQMTGVPN 154
Query: 149 YFGLQRFGS-GSVPTHLVGATLLRGEW-KSAVKMILDPREGERNEISKAREYYKETDDID 206
+FG QR+G+ G+ +HL+G +++ + ++A +I DP + E + Y E + ++
Sbjct: 155 FFGEQRYGALGN--SHLIGQAIVQKNFSQAAAHIIGDPDKIIHPEWRQGAILYAE-NRLE 211
Query: 207 GTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQ 266
+ LPR + ER +++ L++ +A++ +P L +Y+ +YQS L++ S R++
Sbjct: 212 EAEQALPRRMRNERNLVRSLRQGRSAE-KAVRRLPGKLLRLYLSAYQSHLFDRLVSMRLE 270
Query: 267 KHGTEHVVVGDLVF 280
E + GD+ +
Sbjct: 271 S--LETLWTGDIAY 282
>gi|108761140|ref|YP_632138.1| tRNA pseudouridine synthase D [Myxococcus xanthus DK 1622]
gi|108465020|gb|ABF90205.1| tRNA pseudouridine synthase D [Myxococcus xanthus DK 1622]
Length = 544
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 117/246 (47%), Gaps = 22/246 (8%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ + + K+ T +A+ + G+ P + + G KDK+ + Q + V A
Sbjct: 24 GRHRVYLMDKQKLSTFDAVTRLRDAFGLKPGAISYCGLKDKQGRTEQIIAV------DGA 77
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
++ + +RL + L + NRF++T+R + +S + +A + R G IN
Sbjct: 78 DVDMQEPDLRLKYLGRTDKPLSAANITSNRFSVTVRALQPESLGPLNVAAAEVNRLGVIN 137
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAV-KMILDPREGERNEISKAREYYKET----- 202
YF QRFGS + L+RG++++A+ + P E +R E +K + ++KE
Sbjct: 138 YFDSQRFGSLKHGQGFIAKDLIRGDFEAALHNYMAKPSELDRTEDAKIKAFWKENWGRWD 197
Query: 203 --DDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
+GT RK R +L+ L+ PG+YL+A I R M + +YQSFLWN
Sbjct: 198 ARVPYEGT-RKYHR-------VLKSLRDQPGDYLRAFMQIDADYRAMLIFTYQSFLWNEG 249
Query: 261 ASARVQ 266
+Q
Sbjct: 250 VRRYLQ 255
>gi|292654822|ref|YP_003534719.1| tRNA pseudouridine synthase D (TruD) superfamily protein [Haloferax
volcanii DS2]
gi|448292959|ref|ZP_21483280.1| tRNA pseudouridine synthase D [Haloferax volcanii DS2]
gi|291371265|gb|ADE03492.1| tRNA pseudouridine synthase D (TruD) superfamily [Haloferax
volcanii DS2]
gi|445571934|gb|ELY26477.1| tRNA pseudouridine synthase D [Haloferax volcanii DS2]
Length = 463
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 84/263 (31%), Positives = 122/263 (46%), Gaps = 29/263 (11%)
Query: 42 DTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGI--RL 99
DT + G +S LG +AGTKDK +V+TQ TV A+ + + I + RL
Sbjct: 69 DTNDFAGRLSDELGASRERVSWAGTKDKHAVTTQLFTVNGGDAADVPEVPNADIEVVGRL 128
Query: 100 GDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSL-------GRNGFINYFGL 152
G L G L GN F I +R ++ D A ++L GR G N+FG
Sbjct: 129 G------RTLDFGDLAGNGFRIRVRDP--ETPDNAAAVTDALTEFGGREGRVGVPNFFGH 180
Query: 153 QRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYYKE-----TDDID 206
QRFGS TH VG ++RGEW+ AV P E E E R E D
Sbjct: 181 QRFGSIRPITHTVGLHVVRGEWREAVLAYCGGPTEDEPEETQAGRAVVDEEAASADPDWH 240
Query: 207 GTLRKLPRHLVAERAILQCL----KKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAAS 262
L ++P +L ER +L L + ++ AL+++P L+ ++V++ QS+ +N S
Sbjct: 241 RALDRIPGYLGYERGMLHRLAEDGAETDEDWRNALESVPSNLQRLFVNAAQSYAFNRMLS 300
Query: 263 ARVQKH-GTEHVVVGDLVFCKGD 284
R + + V GD+V C D
Sbjct: 301 ERRDRGLPFDEPVEGDVV-CFAD 322
>gi|119872025|ref|YP_930032.1| pseudouridylate synthase [Pyrobaculum islandicum DSM 4184]
gi|189036222|sp|A1RRV7.1|TRUD_PYRIL RecName: Full=Probable tRNA pseudouridine synthase D; AltName:
Full=tRNA pseudouridine(13) synthase; AltName: Full=tRNA
pseudouridylate synthase D; AltName: Full=tRNA-uridine
isomerase D
gi|119673433|gb|ABL87689.1| Pseudouridylate synthase [Pyrobaculum islandicum DSM 4184]
Length = 412
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 125/257 (48%), Gaps = 8/257 (3%)
Query: 27 QLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASK 86
++G + H+ K+N DT + L ++K LG+ R G KD R+V++Q +++ + +
Sbjct: 56 RVGSWTWIHVVKKNTDTLKLLLYLAKTLGLKARDISIGGIKDTRAVTSQIISI-RGDVTN 114
Query: 87 LAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGF 146
L + + F + + + + GNRFTITLR V+ D +A+ +L
Sbjct: 115 LPKIRN----VEFLSFWPMDKPITPSLIYGNRFTITLRN--VEKVDCAEATLKTLQYIAL 168
Query: 147 INYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDDID 206
NY+G QRFG+ +HL+G L++ + + ++ ++++K D
Sbjct: 169 PNYYGYQRFGTIRPVSHLLGKALVKKDAEEFFDIMFCKIFAYESDVAKKAREAACKGDYR 228
Query: 207 GTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQ 266
L P+ + ERA+L+ L + + A+ +IP + +YV + QS+L+N S R++
Sbjct: 229 RALEIFPKRFIEERAVLRGLLRGLDLW-NAIMSIPIQILRIYVEALQSYLFNLFLSKRME 287
Query: 267 KHGTEHVVVGDLVFCKG 283
+ GDLV G
Sbjct: 288 LGPLNRPIEGDLVEING 304
>gi|379003416|ref|YP_005259088.1| tRNA pseudouridine synthase, TruD family [Pyrobaculum oguniense
TE7]
gi|375158869|gb|AFA38481.1| tRNA pseudouridine synthase, TruD family [Pyrobaculum oguniense
TE7]
Length = 413
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 120/259 (46%), Gaps = 10/259 (3%)
Query: 27 QLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASK 86
++G + H+ K N DT + ++K LG+ PR G KD R+V++ ++V
Sbjct: 56 RVGGWTWIHVVKRNVDTIRLMLRLAKALGVSPREVSVGGIKDTRAVASHIISV----RGA 111
Query: 87 LAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGF 146
+ L + + G++ + + ++ GNRFTI LR V+ D + +L
Sbjct: 112 VKGLPE-VPGVKFLGMWSMDRPMSPSEIYGNRFTIVLRD--VERVDCAVEALEALKSAAV 168
Query: 147 INYFGLQRFGSGSVPTHLVGATLLRGEWKSAV-KMILDPREGERNEISKAREYYKETDDI 205
NY+G QRFG+ +HL+G LLR + M E E KARE +
Sbjct: 169 PNYYGYQRFGTIRPVSHLLGRALLRKSPEEFFDAMFCKIFEHESAAAKKARE-LACRGEY 227
Query: 206 DGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARV 265
L PR V ERA L+ L + + A+ IP + +YV + QS+L+N SAR+
Sbjct: 228 QKALETFPRRFVEERAFLRRLAQG-YDMWNAIMGIPLQILRIYVEAAQSYLFNRFLSARL 286
Query: 266 QKHGTEHVVVGDLVFCKGD 284
+ + + GDLV G
Sbjct: 287 ELGPLDKPLEGDLVEVGGQ 305
>gi|126460387|ref|YP_001056665.1| pseudouridylate synthase [Pyrobaculum calidifontis JCM 11548]
gi|126250108|gb|ABO09199.1| Pseudouridylate synthase [Pyrobaculum calidifontis JCM 11548]
Length = 411
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 128/264 (48%), Gaps = 23/264 (8%)
Query: 27 QLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASK 86
++G + H+ K DT + + ++K LG+ PR G KD R+V++Q V+V + S
Sbjct: 55 RVGNWTWIHVVKRGVDTLKFVLRLAKALGVNPRDISIGGIKDTRAVTSQIVSV-RGTVSS 113
Query: 87 LAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGF 146
L ++ G+ + + ++ GNRFTI +RG VD D + +L +
Sbjct: 114 L----PQIPGVEFLGMWPMDRPITPAEIYGNRFTIVVRG--VDRADCAAEALAALAKTPI 167
Query: 147 INYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMI---LDPREGE----RNEISKAREYY 199
NY+G QRFG+ HL+G LL+ + ++ ++ + PRE E E++ EY
Sbjct: 168 PNYYGYQRFGTVRPVGHLLGLALLKKDAEAFFDVMFCKIFPRESEAAKRARELACRGEYA 227
Query: 200 KETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNH 259
K L P+ + ERA L+ L + + A AIP + +Y+ + QS+++N
Sbjct: 228 K-------ALEAFPKRFLEERAFLRKLVEG-ADLWNAAMAIPGQILKIYIEAAQSYVFNL 279
Query: 260 AASARVQKHGTEHVVVGDLVFCKG 283
S R++ E V GDLV G
Sbjct: 280 FLSRRMELAPLEP-VEGDLVDVGG 302
>gi|433426508|ref|ZP_20406889.1| tRNA pseudouridine synthase D [Haloferax sp. BAB2207]
gi|432196973|gb|ELK53386.1| tRNA pseudouridine synthase D [Haloferax sp. BAB2207]
Length = 463
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 83/263 (31%), Positives = 122/263 (46%), Gaps = 29/263 (11%)
Query: 42 DTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGI--RL 99
DT + G +S L +AGTKDK +V+TQ TV A+ + + I + RL
Sbjct: 69 DTNDFAGRLSDELDASRERVSWAGTKDKHAVTTQLFTVNGGDAADVPEIPNADIEVVGRL 128
Query: 100 GDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSL-------GRNGFINYFGL 152
G L G L GN F I +R ++ D A ++L GR G N+FG
Sbjct: 129 G------RTLDFGDLAGNGFRIRVRDP--ETPDNAAAVTDALTEFGGREGRVGVPNFFGH 180
Query: 153 QRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYYKE-----TDDID 206
QRFGS TH VG ++RGEW+ AV P E E E R E D
Sbjct: 181 QRFGSIRPITHTVGLHVVRGEWREAVLAYCGGPTEDEPEETQAGRAVVDEEAASADPDWH 240
Query: 207 GTLRKLPRHLVAERAILQCL----KKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAAS 262
L ++P +L ER +L L + ++ AL+++P L+ ++V++ QS+ +N S
Sbjct: 241 RALDRIPGYLGYERGMLHRLAEDGAETDEDWRNALESVPSNLQRLFVNAAQSYAFNRMLS 300
Query: 263 ARVQKH-GTEHVVVGDLVFCKGD 284
R+ + + V GD+V C D
Sbjct: 301 ERLDRGLPFDEPVEGDVV-CFAD 322
>gi|448543376|ref|ZP_21624941.1| tRNA pseudouridine synthase D [Haloferax sp. ATCC BAA-646]
gi|448550402|ref|ZP_21628781.1| tRNA pseudouridine synthase D [Haloferax sp. ATCC BAA-645]
gi|448559372|ref|ZP_21633543.1| tRNA pseudouridine synthase D [Haloferax sp. ATCC BAA-644]
gi|445706513|gb|ELZ58391.1| tRNA pseudouridine synthase D [Haloferax sp. ATCC BAA-646]
gi|445711383|gb|ELZ63176.1| tRNA pseudouridine synthase D [Haloferax sp. ATCC BAA-644]
gi|445711403|gb|ELZ63195.1| tRNA pseudouridine synthase D [Haloferax sp. ATCC BAA-645]
Length = 459
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 83/263 (31%), Positives = 122/263 (46%), Gaps = 29/263 (11%)
Query: 42 DTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGI--RL 99
DT + G +S L +AGTKDK +V+TQ TV A+ + + I + RL
Sbjct: 69 DTNDFAGRLSDELDASRERVSWAGTKDKHAVTTQLFTVNGGDAADVPEIPNADIEVVGRL 128
Query: 100 GDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSL-------GRNGFINYFGL 152
G L G L GN F I +R ++ D A ++L GR G N+FG
Sbjct: 129 G------RTLDFGDLAGNGFRIRVRDP--ETPDNAAAVTDALTEFGGREGRVGVPNFFGH 180
Query: 153 QRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYYKE-----TDDID 206
QRFGS TH VG ++RGEW+ AV P E E E R E D
Sbjct: 181 QRFGSIRPITHTVGLHVVRGEWREAVLAYCGGPTEDEPEETQAGRAVVDEEAASADPDWH 240
Query: 207 GTLRKLPRHLVAERAILQCL----KKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAAS 262
L ++P +L ER +L L + ++ AL+++P L+ ++V++ QS+ +N S
Sbjct: 241 RALDRIPGYLGYERGMLHRLAEDGAETDEDWRNALESVPSNLQRLFVNAAQSYAFNRMLS 300
Query: 263 ARVQKH-GTEHVVVGDLVFCKGD 284
R+ + + V GD+V C D
Sbjct: 301 ERLDRGLPFDEPVEGDVV-CFAD 322
>gi|435845918|ref|YP_007308168.1| tRNA pseudouridine synthase, TruD family [Natronococcus occultus
SP4]
gi|433672186|gb|AGB36378.1| tRNA pseudouridine synthase, TruD family [Natronococcus occultus
SP4]
Length = 470
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 83/298 (27%), Positives = 126/298 (42%), Gaps = 53/298 (17%)
Query: 42 DTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGD 101
DT + +S LGI +AGTKDK +V+TQ +V+ +L ++ G L
Sbjct: 67 DTNDFASRLSDALGISRERVNWAGTKDKYAVTTQLFSVYGAEPEELPDVD----GADLEV 122
Query: 102 FCYVKEGLLLGQLLGNRFTITLRGVVVDSE------------------DVIKASANSLGR 143
L G L GN F I VV D + D + G+
Sbjct: 123 LGRAGRNLEFGDLAGNAFEI----VVADPDRPGNAEPITDALREFGGLDRRRGGEEGDGK 178
Query: 144 N---GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYY 199
G N+FG QRFGS TH VG ++RG W+ AV L +P + E +AR +
Sbjct: 179 ETPIGVPNFFGQQRFGSRRPVTHKVGLEIVRGNWEGAVMAYLGNPTDAEPEGTQEARAFV 238
Query: 200 ---------------KETDDIDGTLRKLPRHLVAERAILQCLKKC-----PGNYLQALKA 239
++ D L ++P L ER++ L + P + AL+
Sbjct: 239 DRELRRSSDSSSGERRDPGDWQEALERIPNRLRYERSMCHALAELDEEPGPEEFRAALER 298
Query: 240 IPRTLRMMYVHSYQSFLWNHAASARVQKH-GTEHVVVGDLVFCKGDDTEKELGCVNPE 296
+P L+ ++VH+ QS+ +N S R+++ + V GD+V C D E G V P+
Sbjct: 299 VPSNLQRLFVHAAQSYAFNRMLSERLERGLPFDRPVAGDVV-CFADSDAPE-GLVLPD 354
>gi|448572871|ref|ZP_21640632.1| tRNA pseudouridine synthase D [Haloferax lucentense DSM 14919]
gi|448597084|ref|ZP_21654222.1| tRNA pseudouridine synthase D [Haloferax alexandrinus JCM 10717]
gi|445719643|gb|ELZ71322.1| tRNA pseudouridine synthase D [Haloferax lucentense DSM 14919]
gi|445740965|gb|ELZ92470.1| tRNA pseudouridine synthase D [Haloferax alexandrinus JCM 10717]
Length = 463
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 83/263 (31%), Positives = 122/263 (46%), Gaps = 29/263 (11%)
Query: 42 DTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGI--RL 99
DT + G +S L +AGTKDK +V+TQ TV A+ + + I + RL
Sbjct: 69 DTNDFAGRLSDELDASRERVSWAGTKDKHAVTTQLFTVNGGDAADVPEIPNADIEVVGRL 128
Query: 100 GDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSL-------GRNGFINYFGL 152
G L G L GN F I +R ++ D A ++L GR G N+FG
Sbjct: 129 G------RTLDFGDLAGNGFRIRVRDP--ETPDNAAAVTDALTEFGGREGRVGVPNFFGH 180
Query: 153 QRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYYKE-----TDDID 206
QRFGS TH VG ++RGEW+ AV P E E E R E D
Sbjct: 181 QRFGSIRPITHTVGLHVVRGEWREAVLAYCGGPTEDEPEETQAGRAVVDEEAASADPDWH 240
Query: 207 GTLRKLPRHLVAERAILQCLK----KCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAAS 262
L ++P +L ER +L L + ++ AL+++P L+ ++V++ QS+ +N S
Sbjct: 241 RALDRIPGYLGYERGMLHRLAEDGTETDEDWRNALESVPSNLQRLFVNAAQSYAFNRMLS 300
Query: 263 ARVQKH-GTEHVVVGDLVFCKGD 284
R+ + + V GD+V C D
Sbjct: 301 ERLDRGLPFDEPVEGDVV-CFAD 322
>gi|340345274|ref|ZP_08668406.1| tRNA pseudouridine synthase D TruD [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339520415|gb|EGP94138.1| tRNA pseudouridine synthase D TruD [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 398
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 116/231 (50%), Gaps = 15/231 (6%)
Query: 34 FHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKR 93
+ L K+ DT AL I K GI +S G KD +V+ Q V + S +++
Sbjct: 55 YKLKKKKIDTNHALSDIFKKTGIRLKSLGL---KDASAVTEQFVCSDSKSKSIDNYSSEK 111
Query: 94 LIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQ 153
++G +VK+ L ++GN F+I + V + D + + +N++G Q
Sbjct: 112 YSLEKIG---HVKKPLSKKDMIGNHFSIEISDCVGNLTDFTE-------YDKILNFYGYQ 161
Query: 154 RFGSGSVPTHLVGATLLRGEWKSAVKMILD-PREGERNEISKAREYYKETDDIDGTLRKL 212
RFGS THL+G LL+ +K AV ++L + E ++ RE + + L ++
Sbjct: 162 RFGSKRAVTHLIGKALLQRNFKKAVDLLLSFTSTYDSKENTEIREKLADPSNYKKYLGQV 221
Query: 213 PRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASA 263
P + ER +LQ + + + +A+ A+P LR YV +YQSFL+NHA SA
Sbjct: 222 PPQMDVERIVLQEMIEHDDS-QKAIHAVPLPLRRFYVQAYQSFLFNHALSA 271
>gi|448472235|ref|ZP_21601111.1| tRNA pseudouridine synthase D [Halorubrum aidingense JCM 13560]
gi|445820025|gb|EMA69855.1| tRNA pseudouridine synthase D [Halorubrum aidingense JCM 13560]
Length = 500
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 100/355 (28%), Positives = 152/355 (42%), Gaps = 76/355 (21%)
Query: 15 PFDS-RGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVS 73
P D+ RGS +PE L + + DT + IS LGI +AGTKDKR+V+
Sbjct: 52 PMDADRGS--YPE-----LVVRVTLRDWDTNDFARRISDALGISRERVSWAGTKDKRAVT 104
Query: 74 TQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSE-- 131
TQ T+ + L A+ G + GL G L GN F I + V ++
Sbjct: 105 TQLFTLREVDPEDLPAIR----GAEIEPLGRAGRGLSFGDLAGNAFEIRVADAVNEAPAR 160
Query: 132 --DVIKASANSLGRN-----------------GFINYFGLQRFGSGSVPTHLVGATLLRG 172
DV++ + G G NYFG QRFGS TH+VG + R
Sbjct: 161 VADVVRDLRSFAGGAESDEEPVRPDEIPPAIVGVPNYFGQQRFGSRRPVTHVVGLAIARN 220
Query: 173 EWKSAVKMIL-DPREGERNE-------------ISKAREYYKETDD---------IDGT- 208
+ + AV++ +P E E ++ I +A E + D+ +DGT
Sbjct: 221 DPREAVRLYAGNPAETEPDDTRAARDRVDAAFGIGRADETGTDGDESNPAGVEGSVDGTG 280
Query: 209 -------LRKLPRHLVAERAILQCLKK---CPG------NYLQALKAIPRTLRMMYVHSY 252
L +P L ER+++ L PG ++ AL+A+P L+ ++V++
Sbjct: 281 DGDWNACLDAIPGKLRFERSMVHRLADRDVAPGAPSDHEDWWHALEAVPSNLQRLFVNAA 340
Query: 253 QSFLWNHAASARVQKH-GTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDAD 306
QSFL+N S R+++ + V GD+V D EL P+ + DAD
Sbjct: 341 QSFLFNRIVSERLRRGLPFDRPVAGDVVCFADGDAPDEL--YAPDMDRTQRVDAD 393
>gi|374851944|dbj|BAL54890.1| ribosomal large subunit pseudouridine synthase D [uncultured
Acidobacteria bacterium]
Length = 410
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 126/258 (48%), Gaps = 11/258 (4%)
Query: 25 PEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRA 84
P G++ + L K +T + L +++ G+ +F + G KD+ +++TQ +T+ +R
Sbjct: 33 PSDRGRYRLYRLTKAGWNTTDLLRRLARRFGLPYDAFSYGGRKDRHALTTQYITIRDERD 92
Query: 85 SKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRN 144
L L +V E + +LGNRF ITLR + + ++ + ++
Sbjct: 93 LSLTE-----SAFALHALGWVDEPMTPEFILGNRFRITLRAMRAEEVAQVERNLQAVRAY 147
Query: 145 GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILD---PREGERNEISKAREYYKE 201
G NYF QRFGS + L++ +W+ A+K+ L P+E +R + R + +
Sbjct: 148 GLPNYFDDQRFGSYDRKRGFIAEKLVKDQWEEALKIYLTLCYPQE-KRAAKERKRYFLEH 206
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAA 261
+ D L++ V ER + + L++ G+Y+ A+ IPR + + +YQSFLWN
Sbjct: 207 WGEWDACLKQA--KTVTERRLFRFLQRRGGDYVGAVNLIPREELALILSAYQSFLWNEMV 264
Query: 262 SARVQKHGTEHVVVGDLV 279
V++ + + V +V
Sbjct: 265 REIVREWASPILEVRGVV 282
>gi|336121710|ref|YP_004576485.1| tRNA pseudouridine synthase D TruD [Methanothermococcus okinawensis
IH1]
gi|334856231|gb|AEH06707.1| tRNA pseudouridine synthase D TruD [Methanothermococcus okinawensis
IH1]
Length = 417
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 121/248 (48%), Gaps = 22/248 (8%)
Query: 34 FHLY---KENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
F+LY K N + +AL +SK I ++ G+ G KD+ +++ Q +T+ S L
Sbjct: 47 FNLYTLKKTNIENLKALSYVSKEFNIPLKNIGYCGLKDRHAITKQYITI----PSNYGVL 102
Query: 91 NKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFI--- 147
+ + L +K+ L +G L GNRF IT+R + D D +K N RN +I
Sbjct: 103 SINEKNLELKYIKTIKKPLKIGDLKGNRFEITVRDI--DKNDFLKIGENL--RNLYIGAP 158
Query: 148 NYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYYKET-DDI 205
NY+ QRFGS + L+G +++ + ++L + ++ E I + Y K ++
Sbjct: 159 NYYDEQRFGS-VFHNKFIAKEYLKGNYENILNILLTNYKKSENKRIKDLKRYIKNNWNNW 217
Query: 206 DGTLRKLPRHLVAERAILQCLKKCPG-----NYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
+ L+ + + + + + +K NY +ALK + L+ +++ +YQS+LWN
Sbjct: 218 EKILKYIKDNRIKSKMFVNIIKYLAYENNQVNYKEALKYVDDRLKKLFISAYQSYLWNEC 277
Query: 261 ASARVQKH 268
++ +
Sbjct: 278 VKELLKNY 285
>gi|365874108|ref|ZP_09413641.1| hypothetical protein TheveDRAFT_1282 [Thermanaerovibrio velox DSM
12556]
gi|363984195|gb|EHM10402.1| hypothetical protein TheveDRAFT_1282 [Thermanaerovibrio velox DSM
12556]
Length = 390
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 81/274 (29%), Positives = 123/274 (44%), Gaps = 31/274 (11%)
Query: 22 ENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFK 81
E + + G F+ + + K + TQEA+ I+ G+ R F G KDKR V++Q +TV
Sbjct: 24 EGFIKDRGDFIVYRMEKRDMGTQEAVEAIASKSGVPIRDIRFGGRKDKRGVTSQFITV-- 81
Query: 82 QRASKLAALNKRLIGIRLGDFCYVKEGLLLGQ-----LLGNRFTITLRGVVVDSEDVIKA 136
A + L G+ + G L + GN+FT+T+RG ++S+D+ A
Sbjct: 82 ------PAGTRELTTEGGGNISLRRIGFALSHIAPSNITGNQFTVTVRG--LESQDIF-A 132
Query: 137 SANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-------DPREGER 189
S G GF NYF QRFGS L+RG A+K++L PRE ER
Sbjct: 133 KRVSKGEQGFPNYFDDQRFGSLGKSGAYFAERLIRGHLNGALKLLLTDITPEDTPRERER 192
Query: 190 NEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYV 249
+ A + D + + +++ A + G AL+ IPR M
Sbjct: 193 KAL-MAEIWGDFKDCLPLASSPWAKKILSALAEDHSSRGMKG----ALRLIPREQLSMLF 247
Query: 250 HSYQSFLWNHAASARVQKHGTEHVVV---GDLVF 280
+YQSFLWN S ++ H V+ G++ F
Sbjct: 248 SAYQSFLWNLTTSRLMEASSDGHTVILRGGEVFF 281
>gi|448613493|ref|ZP_21663373.1| tRNA pseudouridine synthase D [Haloferax mucosum ATCC BAA-1512]
gi|445740390|gb|ELZ91896.1| tRNA pseudouridine synthase D [Haloferax mucosum ATCC BAA-1512]
Length = 456
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 83/263 (31%), Positives = 121/263 (46%), Gaps = 29/263 (11%)
Query: 42 DTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGI--RL 99
DT + G +S LG+ +AGTKDK +V+TQ TV A + + I + RL
Sbjct: 69 DTNDFAGRLSDDLGVSRERVSWAGTKDKHAVTTQLFTVHGGDADDVPEIPNADIEVVGRL 128
Query: 100 GDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSL----GRN---GFINYFGL 152
G L G L GN F I +R D + + +SL GR G N+FG
Sbjct: 129 G------RTLDFGDLAGNGFRIRVRDP--DQPEAVAEITDSLREFGGREDIVGVPNFFGH 180
Query: 153 QRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYYKE-----TDDID 206
QRFGS TH VG ++RGEW+ AV P E E R E D
Sbjct: 181 QRFGSIRPITHKVGLHVVRGEWREAVLAYCGGPTEDEPEATQVGRAVVDEEAESADPDWH 240
Query: 207 GTLRKLPRHLVAERAILQCL----KKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAAS 262
L ++P +L ER +L L + ++ AL+++P L+ ++V++ QS+ +N S
Sbjct: 241 RALDRIPGYLGYERGMLHRLAEDGSETDDDWRNALESVPSNLQRLFVNAAQSYAFNKMLS 300
Query: 263 ARVQKH-GTEHVVVGDLVFCKGD 284
R+ + + V GD+V C D
Sbjct: 301 ERLDRDLPFDEPVEGDVV-CFAD 322
>gi|448624164|ref|ZP_21670237.1| tRNA pseudouridine synthase D [Haloferax denitrificans ATCC 35960]
gi|445750131|gb|EMA01570.1| tRNA pseudouridine synthase D [Haloferax denitrificans ATCC 35960]
Length = 462
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 85/265 (32%), Positives = 124/265 (46%), Gaps = 33/265 (12%)
Query: 42 DTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGI--RL 99
DT + G +S L +AGTKDK +V+TQ TV A+ + + I + RL
Sbjct: 69 DTNDFAGRLSDELDASRERVSWAGTKDKHAVTTQLFTVNGGDAADVPEIPNADIEVVGRL 128
Query: 100 GDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASA--NSL-------GRNGFINYF 150
G L G L GN F I +R D E+ A+A ++L GR G N+F
Sbjct: 129 G------RTLNFGDLAGNGFRIRVR----DPENPDNAAAVTDALADFGGREGRVGVPNFF 178
Query: 151 GLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYYKE-----TDD 204
G QRFGS TH VG ++RGEW+ AV P E E E R E D
Sbjct: 179 GHQRFGSIRPITHKVGLHVVRGEWREAVLAYCGGPTEDEPEETQAGRAVVDEEAASADPD 238
Query: 205 IDGTLRKLPRHLVAERAILQCL----KKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
L ++P +L ER +L L + ++ AL+++P L+ ++V++ QS+ +N
Sbjct: 239 WHRALDRIPGYLGYERGMLHRLAEDGAETDEDWRNALESVPSNLQRLFVNAAQSYAFNRM 298
Query: 261 ASARVQKH-GTEHVVVGDLVFCKGD 284
S R+ + + V GD+V C D
Sbjct: 299 LSERLDRGLPFDEPVEGDVV-CFAD 322
>gi|294945434|ref|XP_002784678.1| tRNA pseudouridine synthase D, putative [Perkinsus marinus ATCC
50983]
gi|239897863|gb|EER16474.1| tRNA pseudouridine synthase D, putative [Perkinsus marinus ATCC
50983]
Length = 650
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 91/296 (30%), Positives = 133/296 (44%), Gaps = 44/296 (14%)
Query: 33 RFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNK 92
RF L+K N D + + L + S FAG KDKR ++ Q T+ A +
Sbjct: 236 RFVLHKVNIDMPTLQSHLERKLKLPRDSLHFAGLKDKRGLTYQFATL-------PATHSP 288
Query: 93 RLIGIRLGDFC-YVKEG---------------LLLGQLLGNRFTITLRGVVVDSEDVIKA 136
I + D C +K G L G L+GN F + +RGV + + ++
Sbjct: 289 AEIQFAIEDLCSTLKRGWAQVDNFEADNTSRKLQYGMLMGNFFRVRVRGVQKGASERLE- 347
Query: 137 SANSLGRNGFINYFGLQRFG----SGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEI 192
SL + GFINYFGLQRFG GS + GA L + ++K A++ + P EG+
Sbjct: 348 ---SLRKVGFINYFGLQRFGWALDGGSQHVRIGGAILCK-DYKRAIRNWMKPPEGDDTVQ 403
Query: 193 SKAREYYKETDDIDGTLRKLPRHLVAER---------AILQCLKKCP-GNYLQALKAIPR 242
++ + D + L RHL E A+L Y QA+K +PR
Sbjct: 404 AEVFRQWLLDGDSAKAVSAL-RHLSTENNRDLNWWIDALLIVGDDGEHWKYRQAVKRLPR 462
Query: 243 TLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFE 298
++ ++ ++Y + LWN AS R+ K G V VGDLV D +EL V E E
Sbjct: 463 SVIHLFPNAYTACLWNRLASRRI-KTGGLTVQVGDLVAVGAGDNLEELALVQSEEE 517
>gi|386875169|ref|ZP_10117357.1| tRNA pseudouridine synthase D [Candidatus Nitrosopumilus salaria
BD31]
gi|386807011|gb|EIJ66442.1| tRNA pseudouridine synthase D [Candidatus Nitrosopumilus salaria
BD31]
Length = 398
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 127/256 (49%), Gaps = 30/256 (11%)
Query: 34 FHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRV-TVFKQRASKLAALNK 92
+ L K+N DT AL I GI +S G KD +++ Q V + K RA + + +K
Sbjct: 55 YKLKKKNIDTNHALSGIFNKKGIRLKSLGL---KDASAITEQFVCSGNKGRAIENFSTDK 111
Query: 93 RLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGR----NGFIN 148
L YVK+ L ++GN F I I +N L + +N
Sbjct: 112 ----YSLEKIGYVKKPLSKKDMIGNHFKIK-----------ISECSNDLSSFTEYDKILN 156
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL---DPREGERNEISKAREYYKETDDI 205
++G QRFGS THL+G LL+ ++K AV++IL + E N ++ RE + ++
Sbjct: 157 FYGYQRFGSKRAVTHLIGKALLKRDFKKAVELILCFTSTYDSEEN--TEIREKLSDPENY 214
Query: 206 DGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHA-ASAR 264
+ ++P + ER +L+ + + ++A++AIP +LR YV +YQSF++N + +SA
Sbjct: 215 EKYFDQVPPQMDIERIVLKEMID-HNDPIRAIRAIPVSLRRFYVQAYQSFIFNQSLSSAF 273
Query: 265 VQKHGTEHVVVGDLVF 280
+ V GD+ F
Sbjct: 274 LDGENLFEVESGDVCF 289
>gi|448606997|ref|ZP_21659254.1| tRNA pseudouridine synthase D [Haloferax sulfurifontis ATCC
BAA-897]
gi|445738425|gb|ELZ89945.1| tRNA pseudouridine synthase D [Haloferax sulfurifontis ATCC
BAA-897]
Length = 460
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 85/265 (32%), Positives = 124/265 (46%), Gaps = 33/265 (12%)
Query: 42 DTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGI--RL 99
DT + G +S L +AGTKDK +V+TQ TV A+ + + I + RL
Sbjct: 69 DTNDFAGRLSDELDASRERVSWAGTKDKHAVTTQLFTVNGGDAADVPEIPNADIEVVGRL 128
Query: 100 GDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASA--NSL-------GRNGFINYF 150
G L G L GN F I +R D E+ A+A ++L GR G N+F
Sbjct: 129 G------RTLDFGDLAGNGFRIRVR----DPENPDNAAAVTDALADFGGREGRVGVPNFF 178
Query: 151 GLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYYKE-----TDD 204
G QRFGS TH VG ++RGEW+ AV P E E E + R E D
Sbjct: 179 GHQRFGSIRPITHKVGLHVVRGEWREAVLAYCGGPTEDEPEETQEGRAVVDEEAASADPD 238
Query: 205 IDGTLRKLPRHLVAERAILQCL----KKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
L +P +L ER +L L + ++ AL+++P L+ ++V++ QS+ +N
Sbjct: 239 WHRALDAIPGYLGYERGMLHRLAEDGAETDEDWRNALESVPSNLQRLFVNAAQSYAFNRM 298
Query: 261 ASARVQKH-GTEHVVVGDLVFCKGD 284
S R+ + + V GD+V C D
Sbjct: 299 LSERLDRGLPFDEPVEGDVV-CFAD 322
>gi|269792142|ref|YP_003317046.1| tRNA pseudouridine synthase D TruD [Thermanaerovibrio
acidaminovorans DSM 6589]
gi|269099777|gb|ACZ18764.1| tRNA pseudouridine synthase D TruD [Thermanaerovibrio
acidaminovorans DSM 6589]
Length = 385
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 112/241 (46%), Gaps = 18/241 (7%)
Query: 34 FHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTV---FKQRASKLAAL 90
+ L+K + TQEAL +++ I AG KD+R+V+ Q VT + R + A L
Sbjct: 32 YSLWKRDLGTQEALEALARANRIPVHRIRAAGRKDRRAVTEQFVTCDLSTELRPPQDARL 91
Query: 91 NKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYF 150
RL + +E + +LGNRF+IT+R V + + ++A SL R GF NYF
Sbjct: 92 -------RLTPVGFSREHVSPSHILGNRFSITVREV--EDPEAVRARLASLPREGFPNYF 142
Query: 151 GLQRFGSGSVPTHLVGATLLRGEWKSAVKMILD--PREGERNEISKAREYYKETDDIDGT 208
QRF S + L++G A++++L P EG + + D D
Sbjct: 143 DDQRFRSVPTSGEMFAERLVKGHLNGALRLLLTEAPWEGAPEHSERMSQLRGAWGDFDRC 202
Query: 209 LRKLPRHLVAERAILQCLKK--CPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQ 266
L L ER IL+ L + AL+ IPR M +YQSFLWN AS +
Sbjct: 203 LSLASTPL--ERRILESLAQDSSKRGLKGALRLIPRDTLSMLFSAYQSFLWNCTASLLIH 260
Query: 267 K 267
+
Sbjct: 261 Q 261
>gi|448561090|ref|ZP_21634442.1| tRNA pseudouridine synthase D [Haloferax prahovense DSM 18310]
gi|445721322|gb|ELZ72990.1| tRNA pseudouridine synthase D [Haloferax prahovense DSM 18310]
Length = 461
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 85/265 (32%), Positives = 123/265 (46%), Gaps = 33/265 (12%)
Query: 42 DTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGI--RL 99
DT + G +S L +AGTKDK +V+TQ TV A + + I + RL
Sbjct: 69 DTNDFAGRLSDELDASRERVSWAGTKDKHAVTTQLFTVNGGDADDVPEIPNADIEVVGRL 128
Query: 100 GDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASA--NSL-------GRNGFINYF 150
G L G L GN F I +R D E+ A+A ++L GR G N+F
Sbjct: 129 G------RTLNFGDLAGNGFRIRVR----DPENPDNAAAVTDALAEFGGREGRVGVPNFF 178
Query: 151 GLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYYKE-----TDD 204
G QRFGS TH VG ++RGEW+ AV P E E E R E D
Sbjct: 179 GHQRFGSIRPITHKVGLHVVRGEWREAVLAYCGGPTEDEPEETQAGRAVVDEEAASADPD 238
Query: 205 IDGTLRKLPRHLVAERAILQCL----KKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
L ++P +L ER +L L + ++ AL+++P L+ ++V++ QS+ +N
Sbjct: 239 WHRALDRIPGYLGYERGMLHRLAEDGAETDEDWRNALESVPSNLQRLFVNAAQSYAFNRM 298
Query: 261 ASARVQKH-GTEHVVVGDLVFCKGD 284
S R+ + + V GD+V C D
Sbjct: 299 LSERLDRGLPFDEPVEGDVV-CFAD 322
>gi|448582276|ref|ZP_21645780.1| tRNA pseudouridine synthase D [Haloferax gibbonsii ATCC 33959]
gi|445731924|gb|ELZ83507.1| tRNA pseudouridine synthase D [Haloferax gibbonsii ATCC 33959]
Length = 462
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 85/265 (32%), Positives = 122/265 (46%), Gaps = 33/265 (12%)
Query: 42 DTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGI--RL 99
DT + G +S L +AGTKDK +V+TQ TV A + + I + RL
Sbjct: 69 DTNDFAGRLSDELDASRERVSWAGTKDKHAVTTQLFTVNGGDADDVPEIPNADIEVVGRL 128
Query: 100 GDFCYVKEGLLLGQLLGNRFTITLRGVVVDSED------VIKASANSLGRN---GFINYF 150
G L G L GN F I +R D E+ V A A GR+ G N+F
Sbjct: 129 G------RTLNFGDLAGNGFRIRVR----DPENPENAAAVTDALAEFGGRDERVGVPNFF 178
Query: 151 GLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYYKE-----TDD 204
G QRFGS TH VG ++RGEW+ AV P E E E + R E D
Sbjct: 179 GHQRFGSIRPITHTVGLHVVRGEWREAVLAYCGGPTEDEPEETQEGRAVVDEEAASADPD 238
Query: 205 IDGTLRKLPRHLVAERAILQCL----KKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
L ++P +L ER +L L + ++ AL+++P L+ ++V++ QS+ +N
Sbjct: 239 WHRALDRIPGYLGYERGMLHRLAEDGAETDEDWRNALESVPSNLQRLFVNAAQSYAFNRM 298
Query: 261 ASARVQKH-GTEHVVVGDLVFCKGD 284
S R+ + + V GD+V C D
Sbjct: 299 LSERLDRGLPFDEPVEGDVV-CFAD 322
>gi|448445303|ref|ZP_21590358.1| tRNA pseudouridine synthase D [Halorubrum saccharovorum DSM 1137]
gi|445685609|gb|ELZ37963.1| tRNA pseudouridine synthase D [Halorubrum saccharovorum DSM 1137]
Length = 490
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 82/301 (27%), Positives = 123/301 (40%), Gaps = 56/301 (18%)
Query: 42 DTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGD 101
DT + IS LGI +AGTKDKR+V+TQ T+ + L + G +
Sbjct: 73 DTNDFARRISDALGISRERVSWAGTKDKRAVTTQLFTLREVDPGDLPEIR----GAEIEA 128
Query: 102 FCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSL-------------------- 141
GL G L GN F I + V ++ + + L
Sbjct: 129 VGRAGRGLSFGDLAGNAFEIQVADTVPEAPERVADVVGDLRAFGGDGEESGGGGPSDGDD 188
Query: 142 GRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYYK 200
G NYFG QRFGS TH VG ++RG+++ AV++ +P E E ++ AR+
Sbjct: 189 ATVGVPNYFGQQRFGSRRPVTHRVGLAVVRGDFREAVRLYAGNPSEAEPDDTRAARDRVD 248
Query: 201 ET----------------------------DDIDGTLR--KLPRHLVAERAILQCLKKCP 230
D I G LR + H +AER +
Sbjct: 249 AAFGVGGDGEGDDADRTADGTGDGDWEACLDAIPGKLRFERSMVHRLAERGVTPDAPPDH 308
Query: 231 GNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKH-GTEHVVVGDLVFCKGDDTEKE 289
+ AL+A+P L+ ++V++ QSFL+N S R+++ + V GD+V D E
Sbjct: 309 EGWRHALEAVPSNLQRLFVNAAQSFLFNRVLSERLRRGLPFDRPVAGDVVCFADADAPDE 368
Query: 290 L 290
L
Sbjct: 369 L 369
>gi|444912381|ref|ZP_21232545.1| tRNA pseudouridine 13 synthase [Cystobacter fuscus DSM 2262]
gi|444716963|gb|ELW57800.1| tRNA pseudouridine 13 synthase [Cystobacter fuscus DSM 2262]
Length = 533
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 119/246 (48%), Gaps = 22/246 (8%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G++ + + K+ T +A + + G+ P S + G KDK+ + Q + V A
Sbjct: 24 GRYRVYLMDKQKLSTFDAANRLREAFGLKPGSISYCGLKDKQGRTEQLIAV------DGA 77
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
++ + +RL + L + NRF +T+R + +S + +A + R G +N
Sbjct: 78 DVDMQEPDLRLKYLGRSDKALSAANITSNRFAVTVRMLTQESVGPLNVAAAEINRLGVVN 137
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAV-KMILDPREGERNEISKAREYYKET----- 202
YF QRFGS + LLRG++++A+ + P E +R+E +K + ++++
Sbjct: 138 YFDSQRFGSLKHGQGFIAKDLLRGDFEAALHNYMARPSELDRSEDAKVKAFWRDNWGKWD 197
Query: 203 --DDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
+G+ RK R IL+ L++ PG++++A I R M + +YQS+LWN
Sbjct: 198 ARVPFEGS-RKYHR-------ILKSLREHPGDWVRAFLQIEADYRAMLLFTYQSYLWNEG 249
Query: 261 ASARVQ 266
+Q
Sbjct: 250 VRRYLQ 255
>gi|150401583|ref|YP_001325349.1| tRNA pseudouridine synthase D [Methanococcus aeolicus Nankai-3]
gi|150014286|gb|ABR56737.1| tRNA pseudouridine synthase D TruD [Methanococcus aeolicus
Nankai-3]
Length = 399
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 111/238 (46%), Gaps = 15/238 (6%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G + + L K N + +AL ISK I G+ G KDK +++TQ +++ + K+
Sbjct: 27 GNYSLYILKKSNIENLKALNYISKNCNIPINDIGYCGLKDKYAITTQYISI-PTKYDKI- 84
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG-RNGFI 147
LN++ + L + L +G L+GN F IT+R +D D S N G
Sbjct: 85 ELNEK--NLTLKYLKTINSPLKIGSLMGNSFKITVRA--IDKNDFSNISKNLQNLEQGAP 140
Query: 148 NYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISK--AREYYKETDDI 205
NYF QRFGS + L+GE++ A+K+IL N+ K R K +
Sbjct: 141 NYFDDQRFGS-VFHNQFIAKYYLKGEYEKALKIILTEYTRSENKRIKDLKRNIKKNWNKW 199
Query: 206 DGTLRKLPRHLVAERAILQCLKKC-----PGNYLQALKAIPRTLRMMYVHSYQSFLWN 258
D + + + + + + +K NY +A K + L+ ++V SYQS+LWN
Sbjct: 200 DNIIEYIKNNKINSKMFVNIIKYLNNPERNNNYKEAFKYVDNRLKKLFVLSYQSYLWN 257
>gi|171186044|ref|YP_001794963.1| tRNA pseudouridine synthase D TruD [Pyrobaculum neutrophilum
V24Sta]
gi|226708708|sp|B1Y9W7.1|TRUD_THENV RecName: Full=Probable tRNA pseudouridine synthase D; AltName:
Full=tRNA pseudouridine(13) synthase; AltName: Full=tRNA
pseudouridylate synthase D; AltName: Full=tRNA-uridine
isomerase D
gi|170935256|gb|ACB40517.1| tRNA pseudouridine synthase D TruD [Pyrobaculum neutrophilum
V24Sta]
Length = 412
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 81/263 (30%), Positives = 129/263 (49%), Gaps = 14/263 (5%)
Query: 27 QLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASK 86
++G + H+ K N DT + + ++K LG+ R G KD R+V++Q V+V A
Sbjct: 56 RVGGWTWIHVVKRNVDTVKLVLRLAKALGLRSRDISIGGIKDTRAVTSQIVSVRGNVADL 115
Query: 87 LAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGF 146
N + +G+ D + + + GNRFTI LR V+ + +A+ +LG+
Sbjct: 116 PKIPNVQFLGLWPMD-----KPIAPSLIYGNRFTIVLRN--VERRECAEAALAALGKAAL 168
Query: 147 INYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMI---LDPREGERNEISKAREYYKETD 203
NY+G QRFG+ +HL+G LLR + + ++ + P E E + KARE
Sbjct: 169 PNYYGYQRFGTIRPVSHLLGKALLRKDAEGFFHVMFCKIFPYESEAAK--KARE-LACRG 225
Query: 204 DIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASA 263
+ L PR V ERA+L+ L + + A AIP + +Y+ + QS L+N S
Sbjct: 226 EYQKALEAFPRGFVEERALLRRLVRG-SDLWNAAMAIPLQILRIYIEAAQSHLFNLLLSK 284
Query: 264 RVQKHGTEHVVVGDLVFCKGDDT 286
R++ + V GDLV G T
Sbjct: 285 RMELGPLDRPVEGDLVEVNGQVT 307
>gi|302417314|ref|XP_003006488.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
gi|261354090|gb|EEY16518.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
Length = 423
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 85/165 (51%), Gaps = 16/165 (9%)
Query: 8 RKERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTK 67
R + G N +++G E G++L F LYKEN+DT +A+ +++ P+ F FAGTK
Sbjct: 260 RMKTGSNRRNAKGKVK-AEGEGEYLHFTLYKENRDTMDAIHQLARAGRAKPQHFAFAGTK 318
Query: 68 DKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLR--- 124
D+R+ + QR +V +A L + R+ G+ GD+ Y + L LG LLGN F ITL+
Sbjct: 319 DRRAATAQRCSVRWLKAENLHGVQARVHGLVTGDYRYERHPLHLGGLLGNEFVITLKKCH 378
Query: 125 --------GVVVDSEDVIKASA----NSLGRNGFINYFGLQRFGS 157
E I+ +A S+ G NYF QR G+
Sbjct: 379 LADPASEALPAAAREAAIRGAAETALESMASRGCFNYFEHQRIGT 423
>gi|68073401|ref|XP_678615.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56499141|emb|CAH98023.1| conserved hypothetical protein [Plasmodium berghei]
Length = 1006
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 89/174 (51%), Gaps = 12/174 (6%)
Query: 19 RGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVT 78
RG + ++ K+L F+LYKENKD E L + + + G KDKR ++ Q+
Sbjct: 429 RGEKRSIKRDKKYLHFNLYKENKDICEILKKLKIIFKKNNSDISYCGIKDKRGITIQKFC 488
Query: 79 VFKQRASKLAALNKRLIG-------IRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSE 131
+ K + + K LI + L + Y K L LG L GN F I +RGV + +
Sbjct: 489 IQKIKKEDIY---KMLINNSNWCNSVYLSNLEYKKNKLSLGYLKGNFFKILIRGVNNNED 545
Query: 132 DVIKASA--NSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILD 183
+ IK L GFINY+G QRFGS + + +G ++L+ +K A+ +I++
Sbjct: 546 EKIKFHNLFEILKNFGFINYYGHQRFGSKKIKNYQIGISILKKNYKQALFLIIE 599
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 82/320 (25%), Positives = 147/320 (45%), Gaps = 58/320 (18%)
Query: 218 AERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGD 277
E+ IL LK N+ A IP+ + +++H+ QS ++N + R++K G + VV+GD
Sbjct: 728 VEKIILGSLKNN-RNFKNAFINIPKDIFSLFIHATQSLIFNILVNIRMKKFGFK-VVIGD 785
Query: 278 LVFC--KGD-DTE-KELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHN-------- 325
LV KG+ +TE K L VN ++ Y+S +++ ET++P+ + N
Sbjct: 786 LVQLPYKGNYETELKSLDGVNSDYTYDSMSES----------ETNYPEKKLNDSSSNNEI 835
Query: 326 ---LVKTVTAADINSGKYTIDDVVLPLPGSR-VIYPMNDVAEVYHHLAEKDGINLTESLH 381
K + + N +Y I DVVLPLPG + ++P N + E Y + E ++ H
Sbjct: 836 DFDEKKIIIITEENISQYNIYDVVLPLPGDKNTLFPSNLINE-YKKVLESFELSFD---H 891
Query: 382 NVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEA 441
+ + + +G YR++ KP + + LA+ + I K L N++
Sbjct: 892 FKSDKYLFNASGGYRKIVVKPSNLHSVFIK-----ADLAKKNTIPIIKGDLYNLI----- 941
Query: 442 VCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQM-ALK 500
N + D S+ + L++ I + + E + K+M ++
Sbjct: 942 ---NHKNDQSE-QTYDQQLNQHIVFTNS-----------SLYHEHLIKEIPNYKEMSSIF 986
Query: 501 LGLTLPSSCYATMAIRELLK 520
L +LP S Y T+A+ E++K
Sbjct: 987 LTCSLPKSSYITVALMEIIK 1006
>gi|338535209|ref|YP_004668543.1| tRNA pseudouridine synthase D TruD [Myxococcus fulvus HW-1]
gi|337261305|gb|AEI67465.1| tRNA pseudouridine synthase D TruD [Myxococcus fulvus HW-1]
Length = 534
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 116/246 (47%), Gaps = 22/246 (8%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ + + K+ T +A+ + G+ P + + G KDK+ + Q + V A
Sbjct: 24 GRHRVYLMDKQKLSTFDAVTRLRDAFGLKPGAISYCGLKDKQGRTEQIIAV------DGA 77
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
++ + +RL + L + NRF++T+R + S + +A + R G IN
Sbjct: 78 DVDMQDPDLRLKYLGRTDKPLSAANITSNRFSVTVRALQHASLGPLNVAAAEVNRLGVIN 137
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAV-KMILDPREGERNEISKAREYYKET----- 202
YF QRFGS + L+RG++++A+ + P E +R E +K + ++KE
Sbjct: 138 YFDSQRFGSLKHGQGFIAKDLIRGDFEAALHNYMAKPSELDRTEDAKIKAFWKENWGRWD 197
Query: 203 --DDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
+GT RK R +L+ L+ PG+YL+A I R M + +YQSFLWN
Sbjct: 198 ARVPYEGT-RKYHR-------VLKSLRDQPGDYLRAFMQIDADYRAMLLFTYQSFLWNEG 249
Query: 261 ASARVQ 266
+Q
Sbjct: 250 VRRYLQ 255
>gi|310821680|ref|YP_003954038.1| tRNA pseudouridine synthase d [Stigmatella aurantiaca DW4/3-1]
gi|309394752|gb|ADO72211.1| tRNA pseudouridine synthase D [Stigmatella aurantiaca DW4/3-1]
Length = 490
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 126/267 (47%), Gaps = 24/267 (8%)
Query: 9 KERGDNPFDSRGSENWPEQLGKFLRFHLYKENK-DTQEALGLISKMLGILPRSFGFAGTK 67
K+R ++ F + S + E G R +L + K T EA+ I G+ P + F G K
Sbjct: 4 KQRPED-FSVKESYRFDEVPGGLFRVYLMDKQKLSTFEAVDRIRDAFGLKPGAISFCGLK 62
Query: 68 DKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVV 127
DK+ + Q + V + + ++ + +RL + L + NRF +T+R +
Sbjct: 63 DKQGRTEQIIAV------QGSDVDVQDANLRLKYLGRTDKPLSAANITSNRFAVTVRSLD 116
Query: 128 VDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVK-MILDPRE 186
+ +A + R G +NYF QRFGS + L+RG++++A++ P E
Sbjct: 117 ESVLGPLNGAAAEVNRLGVVNYFDSQRFGSLKHGQGFIAKDLIRGDFEAALRNYFAKPSE 176
Query: 187 GERNEISKAREYYKET-------DDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKA 239
+R E +K +++++E +G+ +K R IL+ L+ PG+Y++A
Sbjct: 177 LDRTEDAKVKQFWRENWGRWDARVPFEGS-KKYHR-------ILRSLRDHPGDYVRAFLQ 228
Query: 240 IPRTLRMMYVHSYQSFLWNHAASARVQ 266
I R M + +YQS+LWN +Q
Sbjct: 229 IDADYRAMLLFTYQSYLWNEGVRRYLQ 255
>gi|124802886|ref|XP_001347625.1| tRNA pseudouridine synthase D, putative [Plasmodium falciparum 3D7]
gi|23495208|gb|AAN35538.1| tRNA pseudouridine synthase D, putative [Plasmodium falciparum 3D7]
Length = 993
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 79/163 (48%), Gaps = 7/163 (4%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
+L F+LYKENKD E L L + G KDKR+++ Q+ + K + L
Sbjct: 444 YLHFNLYKENKDICEILNKFKMNLSKKNTDISYCGIKDKRAITVQKFCIHKTNKYDIYNL 503
Query: 91 -------NKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGR 143
+ + + Y ++ L LG L GN F + +RGV + + + +L
Sbjct: 504 ISNNNNKWFCNNNVYISNLEYKRKKLSLGNLNGNHFKVIIRGVHNNVKSNFHILSENLRT 563
Query: 144 NGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPRE 186
GF+NY+G QRFG+ + + +G ++L+ +K ++ ++ E
Sbjct: 564 KGFVNYYGHQRFGTKQIKNYEIGISILKRNYKHSLSYVIQNTE 606
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 84/314 (26%), Positives = 139/314 (44%), Gaps = 46/314 (14%)
Query: 218 AERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGD 277
E+ IL +K N A +P+ + +++H+ QS ++N S R++K G + + +GD
Sbjct: 716 VEKTILNSIKN-SNNLKNAFMNLPKDIFSLFIHAIQSIVFNLLVSIRMKKFGLQ-IALGD 773
Query: 278 LVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLV-----KTVTA 332
LV E+ YE + S LDE + + D +N K +
Sbjct: 774 LV---------EI--------YEQHHSG--YSSLDESSDDNTSDNTNNDNMLYESKIIPI 814
Query: 333 ADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLT-ESLHNVKEFSITSM 391
+ N Y I DVVLPLPG + I ++ E Y + E INLT E + K F +
Sbjct: 815 TENNISLYNIYDVVLPLPGDKNIVLPPNLKEEYIKVLE--TINLTLEDFKSEKHF--FNA 870
Query: 392 TGNYRRVFQKPMDFEWELLT--YIDGNK-PLAETDLDKIAKAKLVNIVKEEEAVCGNKEK 448
+G YR++ KP +F+ + D NK P+ ++DL K+ N +E + +
Sbjct: 871 SGCYRKIVVKPYNFKSIFIKNELNDLNKIPIIKSDLYKLKNEDKENNTFIKEQLPNKTNQ 930
Query: 449 DPSDCMKQSESLSKD-IKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPS 507
S + + +++ + I +S E KE+ S ++ L +LP
Sbjct: 931 ASSQIITEQQNVEDELIYVSNEQYHEYLIKEIPDYQTTS-----------SIYLTCSLPK 979
Query: 508 SCYATMAIRELLKT 521
S Y T+A+ ELLK
Sbjct: 980 SSYITVALMELLKN 993
>gi|70947381|ref|XP_743312.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56522748|emb|CAH79276.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 928
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 84/163 (51%), Gaps = 12/163 (7%)
Query: 30 KFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAA 89
K+L F+LYKENKD E L + + + G KDKR ++ Q+ + K + +
Sbjct: 449 KYLHFNLYKENKDICEILKKLKIIFKKNNSDISYCGIKDKRGITIQKFCIQKIKKEDIY- 507
Query: 90 LNKRLIG-------IRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASA--NS 140
K LI + L + Y K L LG L GN F I +RGV + ++ IK
Sbjct: 508 --KMLINNSNWYNNVYLSNLEYKKNKLSLGYLKGNFFKILIRGVNNNEDEKIKFHNLFEI 565
Query: 141 LGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILD 183
L GFINY+G QRFGS + + +G ++L+ +K A+ +I++
Sbjct: 566 LKNFGFINYYGHQRFGSKKIKNYQIGISILKKNYKQALFLIIE 608
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 96/203 (47%), Gaps = 25/203 (12%)
Query: 203 DDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAAS 262
++I+ + + + E+ IL LK N+ A IP+ + +++H+ QS ++N +
Sbjct: 726 NEIEEIINSISNNSHVEKIILGSLKNS-HNFKNAFINIPKDIFSLFIHATQSLIFNILTN 784
Query: 263 ARVQKHGTEHVVVGDLVFC--KGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHP 320
R+ K G + VV+GDLV KG+ YE+ D L++ +
Sbjct: 785 IRMNKFGFK-VVIGDLVQVPHKGN--------------YETELKNHDDKKLNDSSSNNEI 829
Query: 321 DGRHNLVKTVTAADINSGKYTIDDVVLPLPGSR-VIYPMNDVAEVYHHLAEKDGINLTES 379
D N + +T +I +Y I DVVLPLPG + ++P N + E + L D L+
Sbjct: 830 DFDENKIIIITEENI--SQYNIYDVVLPLPGDKNTLFPSNLIDEYKNVL---DSFELSFD 884
Query: 380 LHNVKEFSITSMTGNYRRVFQKP 402
H + + + +G YR++ KP
Sbjct: 885 -HFKSDKYLFNASGGYRKIVVKP 906
>gi|82539456|ref|XP_724115.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23478650|gb|EAA15680.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 626
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 88/171 (51%), Gaps = 6/171 (3%)
Query: 19 RGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVT 78
RG + ++ K+L F+LYKENKD E L + L + G KDKR ++ Q+
Sbjct: 41 RGEKRSIKRDKKYLHFNLYKENKDICEILKKLKINLKKNNSDISYCGIKDKRGITIQKFC 100
Query: 79 VFKQRASKLAAL----NKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVI 134
+ K + + + N + L + Y K L LG L GN F I +RGV + ++ I
Sbjct: 101 IQKIKKEDIYKMLINNNNWCNNVYLSNLEYKKNKLSLGYLKGNFFKILIRGVNNNEDEKI 160
Query: 135 KASA--NSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILD 183
K L GFINY+G QRFGS + + +G ++L+ +K A+ +I++
Sbjct: 161 KFHNLFEILKNFGFINYYGHQRFGSKKIKNYQIGISILKKNYKQALFLIIE 211
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 79/320 (24%), Positives = 144/320 (45%), Gaps = 58/320 (18%)
Query: 218 AERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGD 277
E+ IL LK N+ A IP+ + +++H+ QS ++N + R+ K G + +V+GD
Sbjct: 348 VEKIILGSLKN-NHNFKNAFMNIPKDIFSLFIHATQSLIFNILVNIRMNKFGFK-IVIGD 405
Query: 278 LVFC--KGD-DTE-KELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHN-------- 325
LV KG+ TE K VN ++ Y+S +++ ET++ D + N
Sbjct: 406 LVQLSHKGNYGTELKSPDGVNSDYTYDSMSES----------ETNYSDKKLNDSSLNNEI 455
Query: 326 ---LVKTVTAADINSGKYTIDDVVLPLPGSR-VIYPMNDVAEVYHHLAEKDGINLTESLH 381
K + + N +Y I DVVLPLPG + ++P N + E Y + E ++ H
Sbjct: 456 DFDETKIIIITEENISQYNIYDVVLPLPGDKNTLFPSNLIDE-YKKVLESFELSFD---H 511
Query: 382 NVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEA 441
+ + + +G YR++ KP + + L + + I K L N++
Sbjct: 512 FKSDKHLFNASGGYRKIVVKPSNLHSVFIK-----ADLTKKNTIPIIKGDLYNLI----- 561
Query: 442 VCGNKEKDPSDCMKQSESLSKDIKLSTEN-NEAACAKEVKQPHVESVCGADSQGKQMALK 500
N + D S+ + L ++I + + KE+ P+ + + ++
Sbjct: 562 ---NHKNDQSE-QTYDQQLDQNIVFTNSSLYHDHLIKEI--PNYQEMS---------SIF 606
Query: 501 LGLTLPSSCYATMAIRELLK 520
L +LP S Y T+A+ E++K
Sbjct: 607 LTCSLPKSSYITVALMEIIK 626
>gi|405375863|ref|ZP_11029880.1| tRNA pseudouridine 13 synthase [Chondromyces apiculatus DSM 436]
gi|397085817|gb|EJJ16990.1| tRNA pseudouridine 13 synthase [Myxococcus sp. (contaminant ex DSM
436)]
Length = 595
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 116/246 (47%), Gaps = 22/246 (8%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ + + K+ T +A+ + G+ P + + G KDK+ + Q + V A
Sbjct: 24 GRHRVYLMDKQKLSTFDAVTRLRDAFGLKPGAISYCGLKDKQGRTEQIIAV------DGA 77
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
++ + +RL + L + NRF++T+R + + + +A + R G IN
Sbjct: 78 DVDMQEPDLRLKYLGRTDKPLSAANITSNRFSVTVRALEDATLGPLNVAAAEVNRLGVIN 137
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAV-KMILDPREGERNEISKAREYYKET----- 202
YF QRFGS + L+RG++++A+ + P E +R E SK + +++E
Sbjct: 138 YFDSQRFGSLKHGQGFIAKDLIRGDFEAALHNYMAKPSELDRTEDSKIKAFWRENWGRWD 197
Query: 203 --DDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
+GT RK R +L+ L+ PG+YL+A I R M + +YQSFLWN
Sbjct: 198 ARVPYEGT-RKYHR-------VLKSLRDQPGDYLRAFLQIDADYRAMLIFTYQSFLWNEG 249
Query: 261 ASARVQ 266
+Q
Sbjct: 250 VRRYLQ 255
>gi|115380083|ref|ZP_01467123.1| tRNA pseudouridine synthase D [Stigmatella aurantiaca DW4/3-1]
gi|115362905|gb|EAU62100.1| tRNA pseudouridine synthase D [Stigmatella aurantiaca DW4/3-1]
Length = 529
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 126/267 (47%), Gaps = 24/267 (8%)
Query: 9 KERGDNPFDSRGSENWPEQLGKFLRFHLYKENK-DTQEALGLISKMLGILPRSFGFAGTK 67
K+R ++ F + S + E G R +L + K T EA+ I G+ P + F G K
Sbjct: 43 KQRPED-FSVKESYRFDEVPGGLFRVYLMDKQKLSTFEAVDRIRDAFGLKPGAISFCGLK 101
Query: 68 DKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVV 127
DK+ + Q + V + + ++ + +RL + L + NRF +T+R +
Sbjct: 102 DKQGRTEQIIAV------QGSDVDVQDANLRLKYLGRTDKPLSAANITSNRFAVTVRSLD 155
Query: 128 VDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVK-MILDPRE 186
+ +A + R G +NYF QRFGS + L+RG++++A++ P E
Sbjct: 156 ESVLGPLNGAAAEVNRLGVVNYFDSQRFGSLKHGQGFIAKDLIRGDFEAALRNYFAKPSE 215
Query: 187 GERNEISKAREYYKET-------DDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKA 239
+R E +K +++++E +G+ +K R IL+ L+ PG+Y++A
Sbjct: 216 LDRTEDAKVKQFWRENWGRWDARVPFEGS-KKYHR-------ILRSLRDHPGDYVRAFLQ 267
Query: 240 IPRTLRMMYVHSYQSFLWNHAASARVQ 266
I R M + +YQS+LWN +Q
Sbjct: 268 IDADYRAMLLFTYQSYLWNEGVRRYLQ 294
>gi|261403290|ref|YP_003247514.1| tRNA pseudouridine synthase D [Methanocaldococcus vulcanius M7]
gi|261370283|gb|ACX73032.1| tRNA pseudouridine synthase D TruD [Methanocaldococcus vulcanius
M7]
Length = 394
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 125/252 (49%), Gaps = 17/252 (6%)
Query: 25 PEQLG--KFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFK- 81
PE++ K + L K+N ++ +AL ISK I + G+ G KD+ +++ Q +++ K
Sbjct: 14 PEKIAGDKCYLYILTKKNIESLKALSYISKKFKIPLKDIGYCGLKDRHAITKQYISIPKY 73
Query: 82 QRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASAN-S 140
+ L N +L I + F LLLG L GN+FTIT+RG + ED+ K N
Sbjct: 74 YKKLYLEEPNLKLKPIGISRF------LLLGDLEGNKFTITIRG--IKKEDIPKLEENLK 125
Query: 141 LGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDP-REGERNEISKAREYY 199
G NYF QRFGS + ++ G + AVK++L ++ E+ I + +
Sbjct: 126 YLDMGAPNYFDSQRFGS-VFDGKFIAKEIIMGNIEEAVKILLTRYKKSEKKRIKDLKRFI 184
Query: 200 -KETDDIDGTLRKLPRHLVAERAILQCLK--KCPGNYLQALKAIPRTLRMMYVHSYQSFL 256
K D + + + + + + + +K K G+Y +A + L+ +++ +YQS+L
Sbjct: 185 SKNWGDWEKIWKYIKENNIKAKMYVNIVKELKKSGDYKKAFNYVDDRLKKLFLSAYQSYL 244
Query: 257 WNHAASARVQKH 268
WN ++++
Sbjct: 245 WNECIKELLKEY 256
>gi|448468015|ref|ZP_21599713.1| tRNA pseudouridine synthase D [Halorubrum kocurii JCM 14978]
gi|445811069|gb|EMA61081.1| tRNA pseudouridine synthase D [Halorubrum kocurii JCM 14978]
Length = 485
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 83/296 (28%), Positives = 127/296 (42%), Gaps = 51/296 (17%)
Query: 42 DTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGD 101
DT + +S LGI +AGTKDKR+V+TQ T+ L + G +
Sbjct: 73 DTNDFARRVSDALGISRERVSWAGTKDKRAVTTQLFTLRGVDPDDLPEIR----GAEIEP 128
Query: 102 FCYVKEGLLLGQLLGNRFTITLRGVVVDSE----DVIK----------------ASANSL 141
GL G L GN F I + G V ++ DV+ A
Sbjct: 129 LGRAGRGLSFGDLAGNAFEIRVAGAVDEAPERVADVVSDLRAFAGGGDDASDGGDEATDD 188
Query: 142 GRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYYK 200
G NYFG QRFGS TH VG ++R +++ AV++ +P E E ++ AR+
Sbjct: 189 ATVGVPNYFGQQRFGSRRPVTHRVGLAVVRDDFREAVRLYAGNPSETEPDDTRAARDRVD 248
Query: 201 -------ETD---------DIDGTLRKLPRHLVAERAILQCLKK------CPG---NYLQ 235
E+D D D L +P L ER+++ L + P ++
Sbjct: 249 AAFGATGESDPAADGTGDGDWDACLDAIPGKLRFERSMVHRLAERDVSPDAPPDHEDWRH 308
Query: 236 ALKAIPRTLRMMYVHSYQSFLWNHAASARVQKH-GTEHVVVGDLVFCKGDDTEKEL 290
AL+A+P L+ ++V++ QS L+N S R+++ + V GD+ D EL
Sbjct: 309 ALEAVPSNLQRLFVNAAQSSLFNKVLSERLRRGLPFDRPVAGDVACFADADAPDEL 364
>gi|448424471|ref|ZP_21582445.1| tRNA pseudouridine synthase D [Halorubrum terrestre JCM 10247]
gi|445682199|gb|ELZ34620.1| tRNA pseudouridine synthase D [Halorubrum terrestre JCM 10247]
Length = 491
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 82/301 (27%), Positives = 126/301 (41%), Gaps = 58/301 (19%)
Query: 42 DTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGD 101
DT + +S LGI +AGTKDKR+V+TQ TV A +L + G +
Sbjct: 73 DTNDFARRLSDALGISRERVSWAGTKDKRAVTTQLFTVRGIGADELPEIR----GAEIEA 128
Query: 102 FCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSL-------------------- 141
L G L GN F I + V ++ D + +A L
Sbjct: 129 LGRAGRSLSFGDLAGNAFEIRVADAVEEAPDRVADAARDLRAFAGDGEAPPDGEGDVPIE 188
Query: 142 GRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYYK 200
G NYFG QRFGS THLVG + R + + AV++ +P E E ++ AR+
Sbjct: 189 ATVGVPNYFGQQRFGSRRPVTHLVGLAIARKDPREAVRLYAGNPAETEPDDTRAARDRVD 248
Query: 201 ETDDID--------------GT--------LRKLPR---------HLVAERAILQCLKKC 229
+D GT L +P H +A+R +
Sbjct: 249 AAFGVDEGSGSDDADRAAADGTGDGDWAACLEAIPGKLRFERSMVHRLADRGVDPDAPPD 308
Query: 230 PGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKH-GTEHVVVGDLV-FCKGDDTE 287
++ AL+A+P L+ ++V++ QS+ +N S R+++ + V GD+V F GD E
Sbjct: 309 DEDWWHALEAVPSNLQRLFVNAAQSYCFNRVVSERLRRGLPFDRPVAGDVVCFADGDAPE 368
Query: 288 K 288
+
Sbjct: 369 E 369
>gi|383455982|ref|YP_005369971.1| tRNA pseudouridine synthase D [Corallococcus coralloides DSM 2259]
gi|380734554|gb|AFE10556.1| tRNA pseudouridine synthase D [Corallococcus coralloides DSM 2259]
Length = 546
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 115/240 (47%), Gaps = 10/240 (4%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
GK + + K+ T +A+ I G+ P + + G KDK+ + Q + V A
Sbjct: 24 GKHRVYLMDKQKLSTFDAVNRIRDAFGLKPGAISYCGLKDKQGRTEQIIAV------DGA 77
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
++ + +RL + L + NRF++T+R + DS + +A + R G +N
Sbjct: 78 DVDMQEPDLRLKFLGRTDKPLSAKNITSNRFSVTVRALTRDSLAPLNLAAAEVNRLGVVN 137
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAV-KMILDPREGERNEISKAREYYKETDDIDG 207
YF QRFG+ + L+RG++++A+ P + +R E +K + +++ D+
Sbjct: 138 YFDSQRFGAIKHGQGFIAKDLIRGDFEAALHNYFARPSDLDRTEDAKVKGFWR--DNWGR 195
Query: 208 TLRKLPRHLVAE-RAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQ 266
++P + IL+ L++ PG++L+A I R M + YQSFLWN +Q
Sbjct: 196 WDARVPFEGAKKYHRILRSLREHPGDWLRAFLQIDSDYRAMILFEYQSFLWNEGVRRYLQ 255
>gi|448456501|ref|ZP_21595270.1| tRNA pseudouridine synthase D [Halorubrum lipolyticum DSM 21995]
gi|445811977|gb|EMA61974.1| tRNA pseudouridine synthase D [Halorubrum lipolyticum DSM 21995]
Length = 487
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 83/298 (27%), Positives = 125/298 (41%), Gaps = 53/298 (17%)
Query: 42 DTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGD 101
DT + IS L I +AGTKDKR+V+TQ T+ L + G +
Sbjct: 73 DTNDFARRISDALQISRERVSWAGTKDKRAVTTQLFTLRGVDPGDLPEIR----GAEIEP 128
Query: 102 FCYVKEGLLLGQLLGNRFTITL-------RGVVVDSEDVIKASANSLGRN---------- 144
GL G L GN F I + R V D ++A G +
Sbjct: 129 LGRAGRGLSFGDLAGNAFEIRVADAVPEARERVADVVSDLRAFGGDAGESAAIEPIDGDA 188
Query: 145 --GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAR----- 196
G NYFG QRFGS TH VG ++R +++ AV++ +P E E ++ AR
Sbjct: 189 TVGVPNYFGQQRFGSRRPVTHRVGLAVVRDDFREAVRLYAGNPSETEPDDTRAARGRVDA 248
Query: 197 ---------------------EYYKETDDIDGTLR--KLPRHLVAERAILQCLKKCPGNY 233
++ D I G LR + H +AER + ++
Sbjct: 249 AFGVGGDGPGDGPAADGTGDGDWEACLDAIPGKLRFERSMVHRLAERDVAPDAPPAHDDW 308
Query: 234 LQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKH-GTEHVVVGDLVFCKGDDTEKEL 290
AL+A+P L+ ++V++ QSFL+N S R+++ + V GD+V D +EL
Sbjct: 309 RHALEAVPSNLQRLFVNAAQSFLFNRMLSERLRRGIPFDRPVAGDVVCFADADAPEEL 366
>gi|332799731|ref|YP_004461230.1| tRNA pseudouridine synthase D TruD [Tepidanaerobacter acetatoxydans
Re1]
gi|438002982|ref|YP_007272725.1| tRNA pseudouridine 13 synthase [Tepidanaerobacter acetatoxydans
Re1]
gi|332697466|gb|AEE91923.1| tRNA pseudouridine synthase D TruD [Tepidanaerobacter acetatoxydans
Re1]
gi|432179776|emb|CCP26749.1| tRNA pseudouridine 13 synthase [Tepidanaerobacter acetatoxydans
Re1]
Length = 395
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 117/251 (46%), Gaps = 11/251 (4%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G + + L K + +T +AL I++ + G+ G KD+ +++ Q ++V ++
Sbjct: 24 GAYRIYLLEKRHWNTMDALLAIARQNKMPMARIGYGGRKDRHALTYQYISVPREYDLSFN 83
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+L I D YV +L G N F +TLR + + + N + R GF N
Sbjct: 84 MPKIKLTFIGFAD-DYVSPAILKG----NYFELTLRKIPTAQKTSVAKRLNEVARCGFPN 138
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDP--REGERNEISKAREYYKETDDID 206
YF QRFGS P + ++R +K A+K+ L E E + R K+ D
Sbjct: 139 YFDDQRFGSVINPEEFLAERIIRKHYKGALKLYLTSIYPEDRGKEKERKRAIEKQWGDWQ 198
Query: 207 GTLRKLPRHLVAERAILQCLKKCPGNY--LQALKAIPRTLRMMYVHSYQSFLWNHAASAR 264
L L R AE+ I++ L K Y ++A+ AIP+ M+ +YQSFLWN +
Sbjct: 199 AIL-PLCRT-AAEKDIVKILAKGESKYQLVKAINAIPKEELSMHFSAYQSFLWNQSLERI 256
Query: 265 VQKHGTEHVVV 275
+ ++ T + +
Sbjct: 257 LLQYITNPIKI 267
>gi|374586649|ref|ZP_09659741.1| tRNA pseudouridine synthase D TruD [Leptonema illini DSM 21528]
gi|373875510|gb|EHQ07504.1| tRNA pseudouridine synthase D TruD [Leptonema illini DSM 21528]
Length = 409
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 76/306 (24%), Positives = 137/306 (44%), Gaps = 21/306 (6%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G + + + KE +T +AL ++K I R + G KD+ ++ Q +T + R A
Sbjct: 42 GPYYVYRMQKEGWNTVDALIRLAKENRISLRDIQYGGKKDRHGITEQFITS-RSRLRLPA 100
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+L ++L + +E + G+++GNRF + LR + ++ + ++ G+IN
Sbjct: 101 SLEG---AVQLMELGRSQEPMAPGRIVGNRFKLWLRSLQASEISHLQRNFEAIKEYGYIN 157
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL--DPREGERNEISKAREYYKETDDID 206
YF QRF + L L G ++ A+KM+L R + + + E K D
Sbjct: 158 YFDSQRFSTFDREEGLPAFALYAGNYEQALKMLLLGTFRREKSHAKDRKAELLKSWGRWD 217
Query: 207 GTLRKLPRHLVAERAILQCLK----KCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAAS 262
L+K ER + LK + P ++ AL +P +M + ++Q+FLWNH S
Sbjct: 218 ACLQKA--DTAVERRVFAFLKESQRRAPADFAGALDLLPFEELLMMLSAFQAFLWNHLVS 275
Query: 263 ARVQKHGTEHVVV-----GDLVF-CKGDDT---EKELGCVNPEFEYESSNDADDSSHLDE 313
+++H + G L F GD + ++EL + + AD S L +
Sbjct: 276 NHIERHANGRAALFKTRTGILAFPAPGDQSIALDQELCLPGKDERFSPEFQADLQSLLAQ 335
Query: 314 VPETDH 319
+ D+
Sbjct: 336 LGLPDN 341
>gi|351705073|gb|EHB07992.1| Pseudouridylate synthase 7-like protein [Heterocephalus glaber]
Length = 175
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 84/186 (45%), Gaps = 58/186 (31%)
Query: 340 YTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVF 399
Y+I DV++PLPG VIYP + ++E Y + D +++ ++++ S++G YR++
Sbjct: 36 YSIHDVLMPLPGFDVIYPKHKISEAYREMLTTDNLDIDNMRCKIRDY---SLSGAYRKII 92
Query: 400 QKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSES 459
+P + WE++ Y D PL TD+D +
Sbjct: 93 VRPQNVSWEVVVYDDPKIPLFNTDVDNL-------------------------------- 120
Query: 460 LSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELL 519
E K P V + S+GK ALK+ +LP S YATMAIRE+L
Sbjct: 121 ------------------EGKPPPVFA-----SEGKYRALKMHFSLPPSTYATMAIREVL 157
Query: 520 KTSTSV 525
K TS+
Sbjct: 158 KMDTSI 163
>gi|70921467|ref|XP_734057.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56506434|emb|CAH85247.1| hypothetical protein PC301464.00.0 [Plasmodium chabaudi chabaudi]
Length = 211
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 85/169 (50%), Gaps = 17/169 (10%)
Query: 30 KFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAA 89
K+L F+LYKENKD E L + + + G KDKR ++ Q+ + K + +
Sbjct: 42 KYLHFNLYKENKDICEILKKLKIIFKKNNSDISYCGIKDKRGITIQKFCIQKIKKEDIYK 101
Query: 90 LNKRLIG-------IRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASA--NS 140
+ LI + L + Y K L LG L GN F I +RGV + ++ IK
Sbjct: 102 M---LINNSNWYNNVYLSNLEYKKNKLSLGYLKGNFFKILIRGVNNNEDEKIKFHNLFEI 158
Query: 141 LGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMI-----LDP 184
L GFINY+G QRFGS + + +G ++L+ +K A+ +I LDP
Sbjct: 159 LKNFGFINYYGHQRFGSKKIKNYQIGISILKKNYKQALFLIIENTDLDP 207
>gi|169806182|ref|XP_001827836.1| hypothetical protein EBI_23221 [Enterocytozoon bieneusi H348]
gi|161779284|gb|EDQ31307.1| uncharacterized conserved protein [Enterocytozoon bieneusi H348]
Length = 406
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 129/276 (46%), Gaps = 66/276 (23%)
Query: 21 SENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRV--- 77
+EN E + F L K N++T +A+G++S +L I + F F+G KDK++++ Q++
Sbjct: 96 TENTDED---YFVFTLKKINQNTSDAIGILSMLLHIPYKEFSFSGNKDKKAITYQKIGCK 152
Query: 78 ------------------------TVFK-QRASKLAALNKRLIGIRLGDFCYVKEG--LL 110
T+F + S + K+ I + D + +G +
Sbjct: 153 VSFTKLFLLACHLKNDDDCLKKFSTIFNFIKTSDIVQFKKKDYMINIFD---IHKGSPIK 209
Query: 111 LGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLL 170
+G +GNRF IT+R V + +++I + F+NYFG QRFG + H +G ++
Sbjct: 210 MGDHIGNRFKITIRDV--NCDNIIPT------KQFFLNYFGPQRFGK-NCNNHKIGELII 260
Query: 171 RGEWKSAVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCP 230
E+ A+ MI N++ + + D K+ R + ++R + K
Sbjct: 261 NKEYDLAIDMIY-------NDVFHNKTH-------DNGKSKIQRFIESQRHKGKTAKSIF 306
Query: 231 GNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQ 266
N + R +M+Y+H+YQS+++N A + R+Q
Sbjct: 307 FN-------LNRDSQMLYLHAYQSYIFNGAINERIQ 335
>gi|448419668|ref|ZP_21580512.1| tRNA pseudouridine synthase D [Halosarcina pallida JCM 14848]
gi|445674582|gb|ELZ27119.1| tRNA pseudouridine synthase D [Halosarcina pallida JCM 14848]
Length = 470
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/291 (26%), Positives = 120/291 (41%), Gaps = 40/291 (13%)
Query: 42 DTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGD 101
DT + +S +GI +AGTKDK +V+TQ +V ++ + + +
Sbjct: 67 DTNDFARRLSDAMGISRERVSWAGTKDKYAVTTQLFSVRDVDPERIPDVRDADVAV---- 122
Query: 102 FCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANS---LGRNG------------- 145
+ L G L GN F + +R + + G NG
Sbjct: 123 LGRIGRDLGFGDLAGNDFEVRVRDADAPENAAAVTAELAAFLAGENGSEGDDAGGDGGEP 182
Query: 146 ---------FINYFGLQRFGSGSVPTHLVGATLLRGEWKSAV-KMILDPREGERNEISKA 195
NYFG QRFGS TH+VG + R EW+ AV + +P E E +A
Sbjct: 183 TDGQTAAVAVPNYFGHQRFGSRRPVTHVVGLHVAREEWREAVLAYVGNPAEAEPEGTREA 242
Query: 196 REYYKETDDID-----GTLRKLPRHLVAERAILQCL----KKCPGNYLQALKAIPRTLRM 246
R++ D D L +P L ER++L L + + AL+A+PR L+
Sbjct: 243 RQFVDREADSDRPDWGACLDAMPHRLRYERSMLHRLAEDGDETDEEWRHALEAVPRNLQR 302
Query: 247 MYVHSYQSFLWNHAASARVQKH-GTEHVVVGDLVFCKGDDTEKELGCVNPE 296
++V++ QS+ +N S R+ + V GD+V D L +P+
Sbjct: 303 LFVNAAQSYAFNRIISERLDRGLPLTEPVEGDVVCFSDRDVPDRLYRADPD 353
>gi|389601912|ref|XP_001566209.2| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322505238|emb|CAM39709.2| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 849
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 109/415 (26%), Positives = 164/415 (39%), Gaps = 73/415 (17%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
+L+ L+K++ AL I++ L I PRS AG KD + QRV + + S AAL
Sbjct: 244 YLQCTLHKQHMAHGNALAHIAQTLRIHPRSISVAGIKDYIGDTVQRVRL--ESVSPAAAL 301
Query: 91 --NKRL----IGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRN 144
N+R + I+L DF Y L+ G L GN F + LR V V + + + G N
Sbjct: 302 EANRRFRRKGLPIKLSDFSYESRPLMPGDLFGNHFHVVLRDVSV-PRAALADAIAAFGEN 360
Query: 145 GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERN---EISKAREY-YK 200
GF NY+G QRF S LLR W + + L+ + +R+ + + ++Y +
Sbjct: 361 GFPNYYGCQRF-SWFGGKQDAAFALLRHNWLAFAFLFLNYTDKDRSLRELLQRPKKYPHP 419
Query: 201 ETDDIDGTLRKLPRHLVAERAILQC--LKKCP----------GNYLQALKA-IPRTLRMM 247
D+ + + R + E L CP G L+ I LR
Sbjct: 420 SQDEYRRRVVRRLRQIAVEPTDLDVGPFLSCPPLSAVLTHADGQPFSKLEELICAQLRDA 479
Query: 248 Y--VHS---------YQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPE 296
Y +HS SFLWN + R+ G V+ GD+ V P
Sbjct: 480 YFDLHSQSRRLTAQRLSSFLWNQVLTLRLHHLGGARVLDGDM--------------VAPA 525
Query: 297 FEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLP-LPGSRVI 355
+ S +D D H TA N +YTI DVV P +
Sbjct: 526 ATRQLSTSVEDRR-----------DWFHTFGDRATAE--NRHRYTIQDVVHPGFSFDGIA 572
Query: 356 YPMNDVAEVYHHLAEKDGINLT--ESLHNVKEFSITSMTGNYRRVFQKPMDFEWE 408
P N + Y + +K ++ S +K+F R + +KP+D +E
Sbjct: 573 LPQNIIGAYYLQICDKYRLDWMAQHSRSGLKDFREPP-----RPIIRKPLDLSYE 622
>gi|407465223|ref|YP_006776105.1| tRNA pseudouridine synthase TruD [Candidatus Nitrosopumilus sp.
AR2]
gi|407048411|gb|AFS83163.1| tRNA pseudouridine synthase TruD [Candidatus Nitrosopumilus sp.
AR2]
Length = 398
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 117/234 (50%), Gaps = 21/234 (8%)
Query: 34 FHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKR 93
+ L K+ DT AL I + GI +S G KD +++ Q V + S + + +
Sbjct: 55 YKLKKKKIDTNHALSGIFRQKGIRLKSLGL---KDASAITEQFVCSGNKGKSIESFSSDK 111
Query: 94 LIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQ 153
++G +VK+ L ++GN F + + D E ++ + +N++G Q
Sbjct: 112 YSLEKIG---FVKKPLSKKDMVGNHFKLKISDCKNDLESFVEF-------DKILNFYGYQ 161
Query: 154 RFGSGSVPTHLVGATLLRGEWKSAVKMILDPREG----ERNEISKAREYYKETDDIDGTL 209
RFGS THL+G +L+ ++ AV +IL E NEI RE + ++
Sbjct: 162 RFGSKRPVTHLIGKAILQMDFDRAVDLILSFTSSYDSKENNEI---REKLSDRENYQQYF 218
Query: 210 RKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASA 263
++P + ER +L+ + + G ++A++AIP +LR Y+ +YQSF++N + SA
Sbjct: 219 DQVPVQMDIERIVLKEMIE-HGESVRAIRAIPISLRRFYIQAYQSFIFNQSLSA 271
>gi|401842417|gb|EJT44630.1| PUS7-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 302
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 71/112 (63%), Gaps = 2/112 (1%)
Query: 3 RNSKKRK-ERGDNPFDSRGSENWPEQLGK-FLRFHLYKENKDTQEALGLISKMLGILPRS 60
RNS+ K E+ + DS G ENW K F+ F L+KENKDT E + +I+K+L + R
Sbjct: 190 RNSRTNKQEKINQTKDSNGVENWGYGPSKDFIHFTLHKENKDTMEGVNVITKLLRVPSRV 249
Query: 61 FGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLG 112
+AGTKD+R+V+ QR+++ K +L ALN+ L G+ +G++ + GL LG
Sbjct: 250 IRYAGTKDRRAVTCQRLSISKIGLDRLNALNRTLKGMIIGNYNFSDAGLNLG 301
>gi|448481658|ref|ZP_21604996.1| tRNA pseudouridine synthase D [Halorubrum arcis JCM 13916]
gi|445821718|gb|EMA71503.1| tRNA pseudouridine synthase D [Halorubrum arcis JCM 13916]
Length = 491
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 81/301 (26%), Positives = 125/301 (41%), Gaps = 58/301 (19%)
Query: 42 DTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGD 101
DT + +S LGI +AGTKDKR+V+TQ TV A +L + G +
Sbjct: 73 DTNDFARRLSDALGISRERVSWAGTKDKRAVTTQLFTVRGIGADELPEIR----GAEIEA 128
Query: 102 FCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSL-------------------- 141
L G L GN F I + V ++ D + + L
Sbjct: 129 LGRSGRSLSFGDLAGNAFEIRVADAVEEAPDRVADAVRDLRAFAGDGEAPPDGEGDVLIE 188
Query: 142 GRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYYK 200
G NYFG QRFGS THLVG + R + + AV++ +P E E ++ AR+
Sbjct: 189 ATVGVPNYFGQQRFGSRRPVTHLVGLAIARKDPREAVRLYAGNPAETEPDDTRAARDRVD 248
Query: 201 ETDDID--------------GT--------LRKLPR---------HLVAERAILQCLKKC 229
+D GT L +P H +A+R +
Sbjct: 249 AAFGVDEGSGSDDADRAAADGTGDGDWAACLEAIPGKLRFERSMVHRLADRGVDPDAPPD 308
Query: 230 PGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKH-GTEHVVVGDLV-FCKGDDTE 287
++ AL+A+P L+ ++V++ QS+ +N S R+++ + V GD+V F GD E
Sbjct: 309 DEDWWHALEAVPSNLQRLFVNAAQSYCFNRVVSERLRRGLPFDRPVAGDVVCFADGDAPE 368
Query: 288 K 288
+
Sbjct: 369 E 369
>gi|118575709|ref|YP_875452.1| tRNA pseudouridine synthase D [Cenarchaeum symbiosum A]
gi|118194230|gb|ABK77148.1| tRNA pseudouridine synthase D [Cenarchaeum symbiosum A]
Length = 395
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 121/256 (47%), Gaps = 21/256 (8%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G + + L K DT AL +K G+ ++ G KD +V+ Q V ++ +K
Sbjct: 55 GGYAVYILKKRGMDTSHALRRAAKA-GLRLKALGL---KDAAAVTEQYVCSMRKGPAKAW 110
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ I L YV+ L + GNRF+I + G D+ + G N N
Sbjct: 111 SSGT----ISLSHAGYVERPLSGKDMAGNRFSIRITGTHGDASEFD-------GYNSIPN 159
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILD-PREGERNEISKAREYYKETDDIDG 207
++G QRFGS +HL+G +++G++ AV ++L P E + E ++ R + + + G
Sbjct: 160 HYGYQRFGSARPVSHLIGRAIVKGDFDWAVDLLLSHPSEYDSTEKAELRRSLGDREKLAG 219
Query: 208 TLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQK 267
+ +P + ER L + G+ +AL A+P ++ +V +YQS+++N S +
Sbjct: 220 KMGDIPPGMDLERTAAAELVRH-GDARRALAALPSSMAGFFVQAYQSYIFNKTLSGTDEL 278
Query: 268 HGTEHVVVGDLVFCKG 283
E GD+ + KG
Sbjct: 279 QPAE----GDVCYTKG 290
>gi|222479007|ref|YP_002565244.1| tRNA pseudouridine synthase D [Halorubrum lacusprofundi ATCC 49239]
gi|222451909|gb|ACM56174.1| tRNA pseudouridine synthase D TruD [Halorubrum lacusprofundi ATCC
49239]
Length = 483
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 79/293 (26%), Positives = 123/293 (41%), Gaps = 50/293 (17%)
Query: 42 DTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGD 101
DT + IS LGI +AGTKDKR+V+TQ T+ + L + G +
Sbjct: 73 DTNDFARRISDALGISRERVSWAGTKDKRAVTTQLFTLREVDPDDLPEIR----GAEIEP 128
Query: 102 FCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSL-------------GRNGFIN 148
L G L GN F I + V ++ + + L G N
Sbjct: 129 LGRAGRRLSFGDLAGNAFEIRVADTVPEAPERVADVVGDLRAFGGDAEEAKDDATVGVPN 188
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYYKET----- 202
YFG QRFGS TH VG ++R +++ AV++ + + E ++ AR+
Sbjct: 189 YFGQQRFGSRRPVTHRVGLAVVRDDFREAVRLYAGNSSDTEPDDTRAARDRVDAAFGVGG 248
Query: 203 -----------------------DDIDGTLR--KLPRHLVAERAILQCLKKCPGNYLQAL 237
D I G LR + H +AER + ++ AL
Sbjct: 249 DDTGDGSDPSADGTGDGDWETCLDAIPGKLRFERSMVHRLAERDVAPDAPPDHEDWRHAL 308
Query: 238 KAIPRTLRMMYVHSYQSFLWNHAASARVQKH-GTEHVVVGDLV-FCKGDDTEK 288
+A+P L+ ++V++ QSFL+N S R+++ + V GD+V F GD E+
Sbjct: 309 EAVPSNLQRLFVNAAQSFLFNQVLSERLRRGLSFDRPVAGDVVCFADGDAPEE 361
>gi|403416450|emb|CCM03150.1| predicted protein [Fibroporia radiculosa]
Length = 231
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 111/275 (40%), Gaps = 75/275 (27%)
Query: 268 HGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNL- 326
HG E VVGDLVF D G + E E + ++ D+ + D G+ N
Sbjct: 2 HGAEKAVVGDLVFDAADS-----GKADDELEPTLESVEGEALVDDKEADNDALSGKSNKR 56
Query: 327 ---------VKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLT 377
VKT+TA D++ KYTI DV++PLPG V YP + E Y DG++
Sbjct: 57 SRKPWVPPKVKTLTAEDVD--KYTIFDVIMPLPGRDVAYPGGALGERYQEFLRVDGLDPH 114
Query: 378 ESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVK 437
K++ S+ G+YR++ P + W +L Y D + LA+ D DK+
Sbjct: 115 NFERKQKDY---SLGGSYRKILHLPKELSWSVLRYTDPDVALAQADEDKLLGF------- 164
Query: 438 EEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQM 497
DP ++ + ++ ++L+
Sbjct: 165 -----------DPPTIVEDGKFIALQVQLT------------------------------ 183
Query: 498 ALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
L ++ YATMA+RE+ KT TS + L
Sbjct: 184 -------LGTAAYATMALREVTKTETSSQYQAGLT 211
>gi|448531013|ref|ZP_21620847.1| tRNA pseudouridine synthase D [Halorubrum hochstenium ATCC 700873]
gi|445707453|gb|ELZ59307.1| tRNA pseudouridine synthase D [Halorubrum hochstenium ATCC 700873]
Length = 487
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 81/297 (27%), Positives = 125/297 (42%), Gaps = 54/297 (18%)
Query: 42 DTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGD 101
DT + +S LG+ +AGTKDKR+V+TQ TV A L + G +
Sbjct: 73 DTNDFARRLSDALGVSRERVSWAGTKDKRAVTTQLFTVRGVDADDLPEVR----GAEIEA 128
Query: 102 FCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSL-------------------- 141
L G L GN F I + V D+ + + A+ L
Sbjct: 129 LGRAGRSLSFGDLAGNAFEIRVADAVEDAPERVAAAVRDLRAFAGETEGSDAAETPADSA 188
Query: 142 ----GRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAR 196
G NYFG QRFGS TH+VG + R + + AV++ +P E ++ AR
Sbjct: 189 FPVRATVGVPNYFGQQRFGSRRPVTHVVGLAIARNDPREAVRLYAGNPAATEPDDTRAAR 248
Query: 197 EYYKETDDI------DGT--------LRKLPRHLVAERAILQCLK------KCPG---NY 233
+ + DGT L ++P L ER+++ L P ++
Sbjct: 249 DRVDAAFGVGGEVESDGTGDGDWAACLDEIPGKLRFERSMVHRLADRGVDPDAPADNEDW 308
Query: 234 LQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKH-GTEHVVVGDLVFCKGDDTEKE 289
AL+A+P L+ ++V++ QS+L+N S R+++ V GD+V C D E
Sbjct: 309 WHALEAVPSNLQRLFVNAAQSYLFNRIVSERLRRGLPFGRPVAGDVV-CFADSGAPE 364
>gi|156081855|ref|XP_001608420.1| hypothetical protein [Plasmodium vivax Sal-1]
gi|148800991|gb|EDL42396.1| hypothetical protein, conserved [Plasmodium vivax]
Length = 1170
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 90/205 (43%), Gaps = 32/205 (15%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
+L F+LYKENKD E L I L + G KDKR ++ QR + K R L L
Sbjct: 491 YLHFNLYKENKDICEVLHKIKINLKKKNGDISYCGIKDKRGITVQRFCIHKARKVDLFRL 550
Query: 91 --------------NKRLIG------------------IRLGDFCYVKEGLLLGQLLGNR 118
R G + + + Y K L LG L GN
Sbjct: 551 IMGGDCDGRDRGRSGHRSDGRSGHRNDGRGRATPWCNNVYVSNLSYAKRKLSLGDLKGNF 610
Query: 119 FTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAV 178
F + +RGV SE+ ++ + GF+NYFG QRFGS + + +G +L+ +K A+
Sbjct: 611 FKVLIRGVEDSSEEKFCVLTDNFRKAGFVNYFGHQRFGSKQIKNYEIGICILKKNYKQAL 670
Query: 179 KMILDPREGERNEISKAREYYKETD 203
+++ + ++ ++ EY E +
Sbjct: 671 FHVVENAGLDSSKKARLVEYLNEVE 695
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 87/330 (26%), Positives = 144/330 (43%), Gaps = 47/330 (14%)
Query: 204 DIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASA 263
DI L + H E+ IL C K N+ A +P+ + +++HS QS ++N A
Sbjct: 872 DISEILNSISSHSHVEKTIL-CSLKNDKNFKNAFMNLPKDIFSLFIHSAQSLIFNILADI 930
Query: 264 RVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGR 323
R++K+G VVVGDL+ ++ E ++D+ H DE E D P
Sbjct: 931 RMKKYGFS-VVVGDLIESTRNNDEV------------PTSDSSTEHHSDES-EGDEPPYE 976
Query: 324 HNLVKTVTAADINSGKYTIDDVVLPLPGSR-VIYPMNDVAEVYHHLAEKDGINLTESLHN 382
N++ VT +I+S Y I DVVLPLPG + ++P N + + + + +
Sbjct: 977 TNVI-IVTHENISS--YNIYDVVLPLPGDKNFLFPPNLIDQ--YKSVLSSLHLSLDDFRS 1031
Query: 383 VKEFSITSMTGNYRRVFQKPMDFEWELL---TYIDGNKPLAETDLDKI--AKAKLVNIVK 437
K F S G YR+V KP D + + +G P +DL ++ + + N
Sbjct: 1032 EKNF--FSAPGGYRKVVVKPRDVKSLFIKSGAAGEGRIPFIRSDLSRLMEGEGRGANSAA 1089
Query: 438 EEEAVCGN------KEKDP-SDCMKQSESLSKDIK-LSTENNEAACAKEVKQPHVESVCG 489
E G+ K + P D +E + + I + ++ KEV P+ +
Sbjct: 1090 RSEGPKGDAANLAAKSEGPKGDAANLAEEIQRHITFVRSDAYHEYLVKEV--PNYRTTA- 1146
Query: 490 ADSQGKQMALKLGLTLPSSCYATMAIRELL 519
++ L +LP S Y T+A+ E+L
Sbjct: 1147 --------SVLLTCSLPKSSYITVALLEVL 1168
>gi|161528706|ref|YP_001582532.1| tRNA pseudouridine synthase TruD [Nitrosopumilus maritimus SCM1]
gi|160340007|gb|ABX13094.1| tRNA pseudouridine synthase D TruD [Nitrosopumilus maritimus SCM1]
Length = 398
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 116/234 (49%), Gaps = 21/234 (8%)
Query: 34 FHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKR 93
+ L K+ DT AL I + G+ +S G KD +++ Q V + S ++
Sbjct: 55 YKLKKKRIDTNHALSDIFRKKGLRLKSLGL---KDASAITEQFVCSGNKGKSIEDYSTEK 111
Query: 94 LIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQ 153
++G +VK+ L ++GN F I + D ++ N +N++G Q
Sbjct: 112 YSLKKIG---FVKKPLSKKDMIGNHFKIKI-------SDCTNKLSSFEEFNNVLNFYGYQ 161
Query: 154 RFGSGSVPTHLVGATLLRGEWKSAVKMIL----DPREGERNEISKAREYYKETDDIDGTL 209
RFGS THL+G +L+ ++ AV+++L D E NEI R+ + + +
Sbjct: 162 RFGSKRPVTHLIGKAILQRDFDKAVELVLSFTSDYDSKENNEI---RQKLVDKQNYNQYF 218
Query: 210 RKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASA 263
K+P+ + ER +L+ + + + +A++AIP +LR Y+ +YQSF++N + S
Sbjct: 219 EKIPKQMDIERIVLKEMIE-HDDAFRAIRAIPVSLRRFYIQAYQSFIFNKSLST 271
>gi|300707327|ref|XP_002995876.1| hypothetical protein NCER_101113 [Nosema ceranae BRL01]
gi|239605108|gb|EEQ82205.1| hypothetical protein NCER_101113 [Nosema ceranae BRL01]
Length = 473
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 83/156 (53%), Gaps = 20/156 (12%)
Query: 111 LGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLL 170
LG L GN+FTI +R V D+ + NGFINY+G QRFG H+VG +L
Sbjct: 276 LGDLKGNKFTIKIRNVA----DLKYKNI----ENGFINYYGPQRFGKAK-NNHIVGEKIL 326
Query: 171 RGEWKSAVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCP 230
E++ A+ +I+ +G + I K E + D T R + + L+ ++ +
Sbjct: 327 NKEYEEAINLIIKNSKGYADFIEKNFE--ECLRKCDNTERFIFKKLLYQKKV-------- 376
Query: 231 GNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQ 266
+Y Q + ++ R +RM+Y+HSYQSFL+N + ++
Sbjct: 377 -DYKQIVLSMRREIRMLYLHSYQSFLFNKDVNKFIE 411
>gi|442320927|ref|YP_007360948.1| tRNA pseudouridine synthase D [Myxococcus stipitatus DSM 14675]
gi|441488569|gb|AGC45264.1| tRNA pseudouridine synthase D [Myxococcus stipitatus DSM 14675]
Length = 540
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 117/240 (48%), Gaps = 10/240 (4%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+F + + K+ T +A+ + G+ P + + G KDK+ + Q + V A
Sbjct: 24 GRFRVYLMDKQKLSTFDAVTRLRDAFGLRPGAISYCGLKDKQGRTEQLIAV------DGA 77
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
++ + +RL + L + NRF++T+R + +S + +A + R G +N
Sbjct: 78 DVDMQEPDLRLKYLGRTNKALSSANITSNRFSVTVRSLGPESLGPLNVAAAEVNRLGVVN 137
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYYKETDDIDG 207
YF QRFGS + L+RG++++A+ L P + +R+E +K + +++ D+
Sbjct: 138 YFDSQRFGSLKHGQGFIAKDLIRGDFEAALHNYLAKPSDLDRSEDAKVKAFWR--DNWGK 195
Query: 208 TLRKLPRHLVAE-RAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQ 266
++P + +L+ L++ P ++ +A I R M + +YQS+LWN +Q
Sbjct: 196 WDSRVPFEGTKKYHRVLRSLREEPKDFARAFLQIDSDYRAMQLFTYQSYLWNEGVRRYLQ 255
>gi|410938487|ref|ZP_11370334.1| tRNA pseudouridine synthase D [Leptospira noguchii str. 2006001870]
gi|410786412|gb|EKR75356.1| tRNA pseudouridine synthase D [Leptospira noguchii str. 2006001870]
Length = 408
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 113/242 (46%), Gaps = 16/242 (6%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
GK+ F L K +T +AL ISK + G+AG KD+ + ++Q ++ K
Sbjct: 37 GKWTIFRLQKSGWNTLDALLRISKESKVSIFEIGYAGKKDRHASTSQYIS-----CQKPL 91
Query: 89 ALNKRLIG-IRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFI 147
+ K L IRL + ++ L +GNRF + LR ++ I+ + + +NGFI
Sbjct: 92 RVPKELANVIRLDKIGFSRKSLSTELNVGNRFRLVLRNLLEKEIKSIQNNFEKICKNGFI 151
Query: 148 NYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYYKETDDID 206
NY+ QRF L L+G+ ++ +K+IL DP GE+ + AR+ K D+
Sbjct: 152 NYYDSQRFSRFHSEFRLPILPFLKGDSETCLKLILTDPFPGEKKQ---ARDRKKNLHDLW 208
Query: 207 GTLRKLPRHLVA--ERAILQCLKK----CPGNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
G + + + E+ I LK+ Y + P+ +M V S+QS +WN
Sbjct: 209 GNWSQCEKWSKSKLEKNIFSNLKREKNPTQKTYSDLILRFPKEELLMLVSSFQSLIWNEF 268
Query: 261 AS 262
S
Sbjct: 269 VS 270
>gi|424812865|ref|ZP_18238105.1| conserved hypothetical protein TIGR00094 family [Candidatus
Nanosalinarum sp. J07AB56]
gi|339757087|gb|EGQ40670.1| conserved hypothetical protein TIGR00094 family [Candidatus
Nanosalinarum sp. J07AB56]
Length = 237
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 86/171 (50%), Gaps = 10/171 (5%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G L L K+N T EA+ +S ML I G+AG KDKR+ + Q ++V ++
Sbjct: 72 GDHLIAKLRKQNMTTMEAINKLSNMLHISKSRIGYAGNKDKRATTEQHISVEGVSQEEIR 131
Query: 89 ALNKRLIGIR-LGDFCYVKEGLLLGQLLGNRFTITLRGV---VVDSEDVIKASANSLGRN 144
+ I LG ++ +G LL N+F IT+R + V D D ++ + L
Sbjct: 132 QIFTDEFEIEVLGRNGHIG----IGNLLANKFEITVRKLELPVDDIADKVEKTNEELS-G 186
Query: 145 GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAV-KMILDPREGERNEISK 194
F NYFG QRFGS TH VG LLRGE++ AV I P + E + I +
Sbjct: 187 KFPNYFGEQRFGSPRPITHQVGRHLLRGEYEEAVWTYIAKPYDQEYDSIGR 237
>gi|418716378|ref|ZP_13276376.1| tRNA pseudouridine synthase D [Leptospira interrogans str. UI
08452]
gi|410787760|gb|EKR81491.1| tRNA pseudouridine synthase D [Leptospira interrogans str. UI
08452]
Length = 408
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 118/249 (47%), Gaps = 24/249 (9%)
Query: 26 EQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFK---- 81
++ GK++ F L K +T +AL ISK + G+AG KD+ + ++Q ++ K
Sbjct: 34 QKTGKWMIFRLQKSGWNTLDALLRISKESKVSIFEIGYAGKKDRHASTSQYISCQKPLRV 93
Query: 82 -QRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANS 140
+ +K+ LNK IG + K+ L +GNRF + LR ++ + I+ +
Sbjct: 94 PKELTKVIQLNK--IG-------FSKKSLSTELNIGNRFQLVLRNLLEKEIESIRNNFEK 144
Query: 141 LGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYY 199
+ +NGFINY+ QRF L +G+ ++ +K+IL DP GE+ + AR+
Sbjct: 145 ITKNGFINYYDSQRFSRFHSEFRLPILPFFKGDAETCLKLILTDPFPGEKKQ---ARDRK 201
Query: 200 KETDDIDGTLRKLPRHLVA--ERAILQCLKK----CPGNYLQALKAIPRTLRMMYVHSYQ 253
K D+ G + + + E+ I LKK Y + P +M V S+Q
Sbjct: 202 KILYDLWGNWSQCEKWSKSKLEKNIFSNLKKEKKPTQKTYSDLILRFPEEELLMLVSSFQ 261
Query: 254 SFLWNHAAS 262
S +WN S
Sbjct: 262 SLIWNEFVS 270
>gi|448507612|ref|ZP_21615052.1| tRNA pseudouridine synthase D [Halorubrum distributum JCM 9100]
gi|448523242|ref|ZP_21618595.1| tRNA pseudouridine synthase D [Halorubrum distributum JCM 10118]
gi|445698275|gb|ELZ50321.1| tRNA pseudouridine synthase D [Halorubrum distributum JCM 9100]
gi|445701641|gb|ELZ53617.1| tRNA pseudouridine synthase D [Halorubrum distributum JCM 10118]
Length = 491
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 80/302 (26%), Positives = 124/302 (41%), Gaps = 57/302 (18%)
Query: 42 DTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGD 101
DT + +S LGI +AGTKDKR+V+TQ TV A +L + G +
Sbjct: 73 DTNDFARRLSDALGISRERVSWAGTKDKRAVTTQLFTVRGIGADELPEIR----GAEIEA 128
Query: 102 FCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVI--------------------KASANSL 141
L G L GN F I + V ++ D + + A +
Sbjct: 129 LGRSGRSLSFGDLAGNAFEIRVADAVEEAPDRVADAVRDLRAFAGDGEAPPDGEGGAPTE 188
Query: 142 GRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYYK 200
G NYFG QRFGS THLVG + R + + AV++ +P E E ++ AR+
Sbjct: 189 ATVGVPNYFGQQRFGSRRPVTHLVGLAIARKDPREAVRLYAGNPAETEPDDTRAARDRVD 248
Query: 201 ETDDID--------------GT--------LRKLPR---------HLVAERAILQCLKKC 229
+D GT L +P H +A+R +
Sbjct: 249 AAFGVDEGSGSDDADRAAADGTGDGDWAACLEAIPGKLRFERSMVHRLADRGVDPDAPPD 308
Query: 230 PGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKH-GTEHVVVGDLVFCKGDDTEK 288
++ AL+A+P L+ ++V++ QS+ +N S R+++ + V GD+V D
Sbjct: 309 DEDWWHALEAVPSNLQRLFVNAAQSYCFNRVVSERLRRGLPFDRPVAGDVVCFADADAPD 368
Query: 289 EL 290
EL
Sbjct: 369 EL 370
>gi|329765590|ref|ZP_08257166.1| tRNA pseudouridine synthase D TruD [Candidatus Nitrosoarchaeum
limnia SFB1]
gi|329138028|gb|EGG42288.1| tRNA pseudouridine synthase D TruD [Candidatus Nitrosoarchaeum
limnia SFB1]
Length = 398
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 112/232 (48%), Gaps = 17/232 (7%)
Query: 34 FHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKR 93
+ L K DT L I + GI ++ G KD +V+ Q V R + +
Sbjct: 55 YKLKKRKIDTNHTLSDIFRKTGIRLKALGL---KDAFAVTEQFVCS-DSRGKSIENYSSD 110
Query: 94 LIGI-RLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGL 152
I ++G YVK+ L ++ N F I + D ED + + + +N++G
Sbjct: 111 KYSIEKIG---YVKKPLSKKDMIANHFNIK----ISDCEDRL---SEFVDYQKILNFYGY 160
Query: 153 QRFGSGSVPTHLVGATLLRGEWKSAVKMILD-PREGERNEISKAREYYKETDDIDGTLRK 211
QRFGS THL+G LLR ++K AV++I+ + + E ++ RE + + L +
Sbjct: 161 QRFGSKRPVTHLIGQALLRRDFKKAVELIVSFTSKYDSKENTEIREKLVDKSNYKKYLNQ 220
Query: 212 LPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASA 263
+P + ER +LQ + + +A+ A+P LR YV +YQS+L+N SA
Sbjct: 221 VPHQMDIERIVLQEMID-HDDAQKAIHAVPLNLRRFYVQAYQSYLFNQTLSA 271
>gi|223992719|ref|XP_002286043.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220977358|gb|EED95684.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 911
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 106/412 (25%), Positives = 157/412 (38%), Gaps = 118/412 (28%)
Query: 36 LYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTV-------FKQRASKLA 88
+ KE + Q A+ + + L P G AG KD ++++ Q T +Q S+L
Sbjct: 530 VQKEQVEHQVAMQHLVRALRCRPGDIGCAGIKDMQAITYQFCTFRGIDLQRARQANSQLL 589
Query: 89 ALNKRLIGIRLGDFCYVKEGLL-LGQLLGNRFTITLRGV------VVDSEDVIKAS---- 137
NKR + L D VK+ LL G+L+GNRF I +R + V + V A+
Sbjct: 590 NGNKR---VALRDMELVKDFLLDRGKLIGNRFEILVRDLKRVERKSVAGDAVCSATNYLE 646
Query: 138 -------------ANSLGRNGFINYFGLQRFGS-GS-----VPTHLVGATLLRGEWKSAV 178
N + GFIN++G QR G GS V + VG LLR ++ AV
Sbjct: 647 QMVPCRASHINEMVNRIKDCGFINFYGEQRVGEPGSSRRVGVRSFDVGRALLRQQFAEAV 706
Query: 179 KMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALK 238
+I+ R E Y+ D++ + K G+ LK
Sbjct: 707 DLIMAGRSSEM--------YFPSEDEVKAR---------------EIWKTSGGDARATLK 743
Query: 239 AIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFE 298
A P++ M ++ GDL GD E + C E
Sbjct: 744 AFPKSQSTMVRE--------------------RDLMKGDLYL--GDTEESDGTCGGEE-- 779
Query: 299 YESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPM 358
G +K VT D NS I +VLPLPG V YP
Sbjct: 780 -----------------------GSAVNIKVVT--DPNS--VDISQIVLPLPGYNVQYPT 812
Query: 359 NDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELL 410
ND+ ++Y L DGI L + + + G+YR + QK +W+++
Sbjct: 813 NDIGQLYKELLTNDGIQLDKKSSQPE----GTAKGSYRCLIQKAHKIKWDIV 860
>gi|307721173|ref|YP_003892313.1| tRNA pseudouridine synthase D TruD [Sulfurimonas autotrophica DSM
16294]
gi|306979266|gb|ADN09301.1| tRNA pseudouridine synthase D TruD [Sulfurimonas autotrophica DSM
16294]
Length = 358
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 77/145 (53%), Gaps = 3/145 (2%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L + K+N T E +G I++ LGI + G+AG KDK +++ Q +++ K+ L
Sbjct: 37 GEHLILQVRKKNLSTNEMVGQIARYLGIKNKEIGYAGLKDKNAMTVQYISLHKKYEETLE 96
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
N GI++ Y L +G L GNRF I L+ V S I + ++ + G N
Sbjct: 97 NFN--FDGIKILSKTYHNNKLRIGHLKGNRFYIKLKKVNPTSAAKIDEALKNIEKFGMPN 154
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGE 173
+FG QRFG+ H++G L +GE
Sbjct: 155 FFGYQRFGNDG-DNHILGEKLAKGE 178
>gi|86158911|ref|YP_465696.1| tRNA pseudouridine synthase D, TruD [Anaeromyxobacter dehalogenans
2CP-C]
gi|85775422|gb|ABC82259.1| tRNA pseudouridine synthase D, TruD [Anaeromyxobacter dehalogenans
2CP-C]
Length = 457
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 133/273 (48%), Gaps = 21/273 (7%)
Query: 14 NPFDSRGSENWP---EQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKR 70
P D + +E+W + G + + + K+ T EA+ I I S + G KDK+
Sbjct: 6 RPEDFQVTESWKFDEDPRGAWFVYLMDKQKLSTFEAVDRICTRFKIPRASVSYCGLKDKQ 65
Query: 71 SVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDS 130
+TQ V + ++R +L + +RL + L NRF +T+R + D
Sbjct: 66 GRTTQLVAI-ERREIELQDTD-----LRLKPLGRTRTPLSAANTTSNRFAVTVRDLGEDD 119
Query: 131 EDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGER 189
+ AS + R G +NYF QRFGS + L+RG+++ A++ +L P E ++
Sbjct: 120 VARLPASVAEVRRLGVVNYFDSQRFGSLKHGQGFIVKDLMRGDFEIALRNVLARPSELDQ 179
Query: 190 NEISKAREYYKE-TDDIDGTLRKLPRHLVAER--AILQCLKKCPGNYLQALKAIPRTLRM 246
+ +K + ++KE + D R+ P + AER A+++ L+ P +Y AL R
Sbjct: 180 SGDAKVKAFWKEHWGEWD---RRNP-NPGAERYQAVVKWLRDHPEDYRGALLRTEPRWRA 235
Query: 247 MYVHSYQSFLWNHAASARVQKHGTEHVVVGDLV 279
+ V +YQS+LWN V+++ E V +G LV
Sbjct: 236 LQVFAYQSWLWNEG----VKQYLREVVGIGRLV 264
>gi|418691443|ref|ZP_13252533.1| tRNA pseudouridine synthase D [Leptospira interrogans str. FPW2026]
gi|418705660|ref|ZP_13266522.1| tRNA pseudouridine synthase D [Leptospira interrogans serovar
Hebdomadis str. R499]
gi|400359392|gb|EJP15390.1| tRNA pseudouridine synthase D [Leptospira interrogans str. FPW2026]
gi|410764706|gb|EKR35411.1| tRNA pseudouridine synthase D [Leptospira interrogans serovar
Hebdomadis str. R499]
Length = 408
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 115/245 (46%), Gaps = 16/245 (6%)
Query: 26 EQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRAS 85
++ GK++ F L K +T +AL ISK + G+AG KD+ + ++Q ++
Sbjct: 34 QKTGKWMIFRLQKSGWNTLDALLRISKESKVSIFEIGYAGKKDRHASTSQYIS-----CQ 88
Query: 86 KLAALNKRLIG-IRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRN 144
K + K L I+L + K+ L +GNRF + LR ++ + I+ + + +N
Sbjct: 89 KPLRVPKELTKVIQLDKIGFSKKSLSTELNVGNRFQLVLRNLLEKEIESIRNNFEKITKN 148
Query: 145 GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYYKETD 203
GFINY+ QRF L +G+ ++ +K+IL DP GE+ + AR+ K
Sbjct: 149 GFINYYDSQRFSRFHSEFRLPILPFFKGDAETCLKLILTDPFPGEKKQ---ARDRKKILY 205
Query: 204 DIDGTLRKLPRHLVA--ERAILQCLKK----CPGNYLQALKAIPRTLRMMYVHSYQSFLW 257
D+ G + + + E+ I LKK Y + P +M V S+QS +W
Sbjct: 206 DLWGNWSQCEKWSKSKLEKNIFSNLKKEKKPTQKTYSDLILRFPEEELLMLVSSFQSLIW 265
Query: 258 NHAAS 262
N S
Sbjct: 266 NEFVS 270
>gi|297619948|ref|YP_003708053.1| tRNA pseudouridine synthase D TruD [Methanococcus voltae A3]
gi|297378925|gb|ADI37080.1| tRNA pseudouridine synthase D TruD [Methanococcus voltae A3]
Length = 405
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 112/240 (46%), Gaps = 17/240 (7%)
Query: 34 FHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKR 93
+ L K+N + +A+ ISK I + G+ G KD+ +++ Q +++ ++ + N +
Sbjct: 35 YELCKKNMENLKAISYISKSQEIPLKEIGYCGLKDRHAITKQYISIPEEYEINIKENNLK 94
Query: 94 LIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRN---GFINYF 150
L I Y E L +G L+GN F IT+R +D + + N RN G NYF
Sbjct: 95 LTFI-----GYSSEKLTIGDLIGNEFEITIRN--IDKTYFLDIAENI--RNLEQGVPNYF 145
Query: 151 GLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYY--KETDDIDGT 208
QRFGS + +L+ ++ K++L N+ K + Y K D +
Sbjct: 146 DNQRFGS-VFEGKFIAEYMLKNNFEEIFKILLTKYGKSENKTIKDLKRYIAKNWGDWEKC 204
Query: 209 LRKLPRHLVAERAILQCLKKCP--GNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQ 266
+ L + + + + LKK G Y +A K I L +++ +YQS+LWN + ++
Sbjct: 205 YQYLSENNIKSKMYINVLKKLKNTGKYKEAYKYIDVRLNDLFIAAYQSYLWNESVKEYLK 264
>gi|421089487|ref|ZP_15550294.1| tRNA pseudouridine synthase D [Leptospira kirschneri str.
200802841]
gi|410001735|gb|EKO52328.1| tRNA pseudouridine synthase D [Leptospira kirschneri str.
200802841]
Length = 405
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 117/246 (47%), Gaps = 18/246 (7%)
Query: 26 EQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRAS 85
++ GK+ F L K +T +AL ISK + G+AG KD+ + ++Q ++
Sbjct: 31 QKTGKWTIFRLQKSGWNTLDALLRISKESKVSIFEIGYAGKKDRHASTSQYIS-----CQ 85
Query: 86 KLAALNKRLIG-IRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRN 144
K + K L I+L + K+ L +GNRF + LR ++ ++I+ + +G+N
Sbjct: 86 KPLRVPKELTNVIQLDKVGFSKKSLSTELNVGNRFRLVLRNLLEREIELIQNNFEKIGKN 145
Query: 145 GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYYKETD 203
GFINY+ QRF L +G+ ++ +K+IL DP GE+ + AR+ K
Sbjct: 146 GFINYYDSQRFSRFHPEFRLPILPFFKGDAETCLKLILTDPFPGEKKQ---ARDRKKILH 202
Query: 204 DIDGTL---RKLPRHLVAERAILQCLKK----CPGNYLQALKAIPRTLRMMYVHSYQSFL 256
D+ G KL + + E+ I LK+ Y + P +M + S+QS +
Sbjct: 203 DLWGNWSQCEKLSKSKL-EKNIFSNLKREKNPTQKTYSDLILRFPEEELLMLISSFQSLI 261
Query: 257 WNHAAS 262
WN S
Sbjct: 262 WNEFVS 267
>gi|418711468|ref|ZP_13272232.1| tRNA pseudouridine synthase D [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
gi|410768389|gb|EKR43638.1| tRNA pseudouridine synthase D [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
Length = 405
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 115/245 (46%), Gaps = 16/245 (6%)
Query: 26 EQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRAS 85
++ GK++ F L K +T +AL ISK + G+AG KD+ + ++Q ++
Sbjct: 31 QKTGKWMIFRLQKSGWNTLDALLRISKESKVSIFEIGYAGKKDRHASTSQYIS-----CQ 85
Query: 86 KLAALNKRLIG-IRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRN 144
K + K L I+L + K+ L +GNRF + LR ++ + I+ + + +N
Sbjct: 86 KPLRVPKELTKVIQLDKIGFSKKSLSTELNVGNRFQLVLRNLLEKEIESIRNNFEKITKN 145
Query: 145 GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYYKETD 203
GFINY+ QRF L +G+ ++ +K+IL DP GE+ + AR+ K
Sbjct: 146 GFINYYDSQRFSRFHSEFRLPILPFFKGDAETCLKLILTDPFPGEKKQ---ARDRKKILY 202
Query: 204 DIDGTLRKLPRHLVA--ERAILQCLKK----CPGNYLQALKAIPRTLRMMYVHSYQSFLW 257
D+ G + + + E+ I LKK Y + P +M V S+QS +W
Sbjct: 203 DLWGNWSQCEKWSKSKLEKNIFSNLKKEKKPTQKTYSDLILRFPEEELLMLVSSFQSLIW 262
Query: 258 NHAAS 262
N S
Sbjct: 263 NEFVS 267
>gi|418694429|ref|ZP_13255467.1| tRNA pseudouridine synthase D [Leptospira kirschneri str. H1]
gi|409957936|gb|EKO16839.1| tRNA pseudouridine synthase D [Leptospira kirschneri str. H1]
Length = 408
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 116/246 (47%), Gaps = 18/246 (7%)
Query: 26 EQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRAS 85
++ GK+ F L K +T +AL ISK + G+AG KD+ + ++Q V+
Sbjct: 34 QKTGKWTIFRLQKSGWNTLDALLRISKESKVSIFEIGYAGKKDRHASTSQYVS-----CQ 88
Query: 86 KLAALNKRLIG-IRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRN 144
K + K L I+L + K+ L +GNRF + LR ++ + I+ + +G+N
Sbjct: 89 KPLRVPKELTNVIQLDKIGFSKKSLSTELNVGNRFRLVLRNLLEREIESIRNNFEKIGKN 148
Query: 145 GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYYKETD 203
GFINY+ QRF L +G+ ++ +K+IL DP GE+ + AR+ K
Sbjct: 149 GFINYYDSQRFSRFHPEFRLPILPFFKGDAETCLKLILTDPFPGEKKQ---ARDRKKILH 205
Query: 204 DIDGTL---RKLPRHLVAERAILQCLKK----CPGNYLQALKAIPRTLRMMYVHSYQSFL 256
D+ G KL + + E+ I LK+ Y + P +M + S+QS +
Sbjct: 206 DLWGNWSQCEKLSKSKL-EKNIFSNLKREKNPTQKTYSDLIFRFPEEELLMLISSFQSLI 264
Query: 257 WNHAAS 262
WN S
Sbjct: 265 WNEFVS 270
>gi|421126664|ref|ZP_15586894.1| tRNA pseudouridine synthase D [Leptospira interrogans serovar
Grippotyphosa str. 2006006986]
gi|421135214|ref|ZP_15595339.1| tRNA pseudouridine synthase D [Leptospira interrogans serovar
Grippotyphosa str. Andaman]
gi|410020632|gb|EKO87432.1| tRNA pseudouridine synthase D [Leptospira interrogans serovar
Grippotyphosa str. Andaman]
gi|410435889|gb|EKP85015.1| tRNA pseudouridine synthase D [Leptospira interrogans serovar
Grippotyphosa str. 2006006986]
Length = 408
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 115/245 (46%), Gaps = 16/245 (6%)
Query: 26 EQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRAS 85
++ GK++ F L K +T +AL ISK + G+AG KD+ + ++Q ++
Sbjct: 34 QKTGKWMIFRLQKSGWNTLDALLRISKESKVSIFEIGYAGKKDRHASTSQYIS-----CQ 88
Query: 86 KLAALNKRLIG-IRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRN 144
K + K L I+L + K+ L +GNRF + LR ++ + I+ + + +N
Sbjct: 89 KPLRVPKELTKVIQLDKIGFSKKSLSTELNVGNRFQLVLRNLLEKEIESIRNNFEKITKN 148
Query: 145 GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYYKETD 203
GFINY+ QRF L +G+ ++ +K+IL DP GE+ + AR+ K
Sbjct: 149 GFINYYDSQRFSRFHSEFRLPILPFFKGDAETCLKLILTDPFPGEKKQ---ARDRKKILY 205
Query: 204 DIDGTLRKLPRHLVA--ERAILQCLKK----CPGNYLQALKAIPRTLRMMYVHSYQSFLW 257
D+ G + + + E+ I LKK Y + P +M V S+QS +W
Sbjct: 206 DLWGNWSQCEKWSKSKLEKNIFSNLKKEKKPTQKTYSDLILRFPEEELLMLVSSFQSLIW 265
Query: 258 NHAAS 262
N S
Sbjct: 266 NEFVS 270
>gi|398340205|ref|ZP_10524908.1| pseudouridine synthase [Leptospira kirschneri serovar Bim str.
1051]
Length = 405
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 117/246 (47%), Gaps = 18/246 (7%)
Query: 26 EQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRAS 85
++ GK+ F L K +T +AL ISK + G+AG KD+ + ++Q ++
Sbjct: 31 QKTGKWTIFRLQKSGWNTLDALLRISKESKVSIFEIGYAGKKDRHASTSQYIS-----CQ 85
Query: 86 KLAALNKRLIG-IRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRN 144
K + K L I+L + K+ L +GNRF + LR ++ ++I+ + +G+N
Sbjct: 86 KPLRVPKELTNVIQLDKVGFSKKSLSTELNVGNRFRLVLRNLLEREIELIQNNFEKIGKN 145
Query: 145 GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYYKETD 203
GFINY+ QRF L +G+ ++ +K+IL DP GE+ + AR+ K
Sbjct: 146 GFINYYDSQRFSRFHPEFRLPILPFFKGDAETCLKLILTDPFPGEKKQ---ARDRKKILH 202
Query: 204 DIDGTL---RKLPRHLVAERAILQCLKK----CPGNYLQALKAIPRTLRMMYVHSYQSFL 256
D+ G KL + + E+ I LK+ Y + P +M + S+QS +
Sbjct: 203 DLWGNWSQCEKLSKSKL-EKNIFSNLKREKNPTQKTYSDLILRFPEEELLMLISSFQSLI 261
Query: 257 WNHAAS 262
WN S
Sbjct: 262 WNEFVS 267
>gi|71390063|ref|XP_802174.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70857840|gb|EAN80728.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 377
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/292 (25%), Positives = 117/292 (40%), Gaps = 68/292 (23%)
Query: 116 GNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWK 175
G + + LR + + ++K + SL GFINYFG QRF S + G LL+GE++
Sbjct: 64 GYAYRVRLRCIPQNHLPLVKPAMQSLEEKGFINYFGPQRFASYTKQNMHPGLHLLKGEFR 123
Query: 176 SAVKMILD--------PREGERNEISKAREY------YKETDDI--DGTLRKLPRHLVAE 219
+A +I+ E R + Y ++ D I D R + H A
Sbjct: 124 AAANIIVQQFYMDSDIAAEKRRRGAGFVKMYHSKAMGFRIPDRIKLDAKRRSIAEHGTAL 183
Query: 220 RAIL-----------------QCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAAS 262
++IL + C +L+ + P +M VH + +F+WN +
Sbjct: 184 QSILDSALQAATLLEEDEEKGSSIDPCEEAFLRVVG--PNAC-LMLVHEFLAFVWNDIVN 240
Query: 263 ARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDG 322
R Q++GT V+ GDLV + S H E
Sbjct: 241 QRFQRYGTFAVLPGDLV----------------------RRNPLASPHSKE--------- 269
Query: 323 RHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGI 374
+ V + + I+ GKYT DVVLPLPG + P N ++Y ++ GI
Sbjct: 270 -YQNVVFASKSGIDKGKYTFSDVVLPLPGVGIRLPENHTTDLYIVTLQRMGI 320
>gi|24213223|ref|NP_710704.1| pseudouridine synthase [Leptospira interrogans serovar Lai str.
56601]
gi|386072909|ref|YP_005987226.1| pseudouridine synthase [Leptospira interrogans serovar Lai str.
IPAV]
gi|421085158|ref|ZP_15546013.1| tRNA pseudouridine synthase D [Leptospira santarosai str. HAI1594]
gi|421105248|ref|ZP_15565837.1| tRNA pseudouridine synthase D [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|37088855|sp|Q8F8N2.1|TRUD_LEPIN RecName: Full=tRNA pseudouridine synthase D; AltName: Full=tRNA
pseudouridine(13) synthase; AltName: Full=tRNA
pseudouridylate synthase D; AltName: Full=tRNA-uridine
isomerase D
gi|62901333|sp|Q72N01.2|TRUD_LEPIC RecName: Full=tRNA pseudouridine synthase D; AltName: Full=tRNA
pseudouridine(13) synthase; AltName: Full=tRNA
pseudouridylate synthase D; AltName: Full=tRNA-uridine
isomerase D
gi|24193946|gb|AAN47722.1| pseudouridine synthase [Leptospira interrogans serovar Lai str.
56601]
gi|353456698|gb|AER01243.1| pseudouridine synthase [Leptospira interrogans serovar Lai str.
IPAV]
gi|410364926|gb|EKP20325.1| tRNA pseudouridine synthase D [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|410432551|gb|EKP76907.1| tRNA pseudouridine synthase D [Leptospira santarosai str. HAI1594]
Length = 408
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 115/245 (46%), Gaps = 16/245 (6%)
Query: 26 EQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRAS 85
++ GK++ F L K +T +AL ISK + G+AG KD+ + ++Q ++
Sbjct: 34 QKTGKWMIFRLQKSGWNTLDALLRISKESKVSIFEIGYAGKKDRHASTSQYIS-----CQ 88
Query: 86 KLAALNKRLIG-IRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRN 144
K + K L I+L + K+ L +GNRF + LR ++ + I+ + + +N
Sbjct: 89 KPLRVPKELTKVIQLDKIGFSKKSLSTELNVGNRFQLVLRNLLEKEIESIRNNFEKITKN 148
Query: 145 GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYYKETD 203
GFINY+ QRF L +G+ ++ +K+IL DP GE+ + AR+ K
Sbjct: 149 GFINYYDSQRFSRFHSEFRLPILPFFKGDAETCLKLILTDPFPGEKKQ---ARDRKKILY 205
Query: 204 DIDGTLRKLPRHLVA--ERAILQCLKK----CPGNYLQALKAIPRTLRMMYVHSYQSFLW 257
D+ G + + + E+ I LKK Y + P +M V S+QS +W
Sbjct: 206 DLWGNWSQCEKWSKSKLEKNIFSNLKKEKKPTQKTYSDLILRFPEEELLMLVSSFQSLIW 265
Query: 258 NHAAS 262
N S
Sbjct: 266 NEFVS 270
>gi|456824054|gb|EMF72491.1| tRNA pseudouridine synthase D [Leptospira interrogans serovar
Canicola str. LT1962]
Length = 408
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 115/245 (46%), Gaps = 16/245 (6%)
Query: 26 EQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRAS 85
++ GK++ F L K +T +AL ISK + G+AG KD+ + ++Q ++
Sbjct: 34 QKTGKWMIFRLQKSGWNTLDALLRISKESKVSIFEIGYAGKKDRHASTSQYIS-----CQ 88
Query: 86 KLAALNKRLIG-IRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRN 144
K + K L I+L + K+ L +GNRF + LR ++ + I+ + + +N
Sbjct: 89 KPLRVPKELTKVIQLDKIGFSKKSLSTELNVGNRFQLVLRNLLEKEIESIRNNFEKITKN 148
Query: 145 GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYYKETD 203
GFINY+ QRF L +G+ ++ +K+IL DP GE+ + AR+ K
Sbjct: 149 GFINYYDSQRFSRFHSEFRLPILPFFKGDAETCLKLILTDPFPGEKKQ---ARDRKKILY 205
Query: 204 DIDGTLRKLPRHLVA--ERAILQCLKK----CPGNYLQALKAIPRTLRMMYVHSYQSFLW 257
D+ G + + + E+ I LKK Y + P +M V S+QS +W
Sbjct: 206 DLWGNWSQCEKWSKSKLEKNIFSNLKKEKKPTQKTYSDLILRFPEEELLMLVSSFQSLIW 265
Query: 258 NHAAS 262
N S
Sbjct: 266 NEFVS 270
>gi|45658864|ref|YP_002950.1| hypothetical protein LIC13038 [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|45602109|gb|AAS71587.1| conserved hypothetical protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
Length = 377
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 115/245 (46%), Gaps = 16/245 (6%)
Query: 26 EQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRAS 85
++ GK++ F L K +T +AL ISK + G+AG KD+ + ++Q ++
Sbjct: 3 QKTGKWMIFRLQKSGWNTLDALLRISKESKVSIFEIGYAGKKDRHASTSQYIS-----CQ 57
Query: 86 KLAALNKRLIG-IRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRN 144
K + K L I+L + K+ L +GNRF + LR ++ + I+ + + +N
Sbjct: 58 KPLRVPKELTKVIQLDKIGFSKKSLSTELNVGNRFQLVLRNLLEKEIESIRNNFEKITKN 117
Query: 145 GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYYKETD 203
GFINY+ QRF L +G+ ++ +K+IL DP GE+ + AR+ K
Sbjct: 118 GFINYYDSQRFSRFHSEFRLPILPFFKGDAETCLKLILTDPFPGEKKQ---ARDRKKILY 174
Query: 204 DIDGTLRKLPRHLVA--ERAILQCLKK----CPGNYLQALKAIPRTLRMMYVHSYQSFLW 257
D+ G + + + E+ I LKK Y + P +M V S+QS +W
Sbjct: 175 DLWGNWSQCEKWSKSKLEKNIFSNLKKEKKPTQKTYSDLILRFPEEELLMLVSSFQSLIW 234
Query: 258 NHAAS 262
N S
Sbjct: 235 NEFVS 239
>gi|421130377|ref|ZP_15590572.1| tRNA pseudouridine synthase D [Leptospira kirschneri str.
2008720114]
gi|410358479|gb|EKP05647.1| tRNA pseudouridine synthase D [Leptospira kirschneri str.
2008720114]
Length = 405
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 117/246 (47%), Gaps = 18/246 (7%)
Query: 26 EQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRAS 85
++ GK+ F L K +T +AL ISK + G+AG KD+ + ++Q ++
Sbjct: 31 QKTGKWTIFRLQKSGWNTLDALLRISKESKVSIFEIGYAGKKDRHASTSQYIS-----CQ 85
Query: 86 KLAALNKRLIG-IRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRN 144
K + K L I+L + K+ L +GNRF + LR ++ + I+ + +G+N
Sbjct: 86 KPLRVPKELTNVIQLDKIGFSKKSLSTELNVGNRFRLVLRNLLEREIESIRNNFEKIGKN 145
Query: 145 GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYYKETD 203
GFINY+ QRF L +G+ ++ +K+IL DP GE+ + AR+ K
Sbjct: 146 GFINYYDSQRFSRFHPEFRLPILPFFKGDAETCLKLILTDPFPGEKKQ---ARDRKKILH 202
Query: 204 DIDGTL---RKLPRHLVAERAILQCLK--KCPGN--YLQALKAIPRTLRMMYVHSYQSFL 256
D+ G KL + + E+ I LK K P Y + P +M + S+QS +
Sbjct: 203 DLWGNWSQCEKLSKSKL-EKNIFSNLKREKNPTQKIYSDLILRFPEEELLMLISSFQSLI 261
Query: 257 WNHAAS 262
WN S
Sbjct: 262 WNEFVS 267
>gi|345317077|ref|XP_001515758.2| PREDICTED: pseudouridylate synthase 7 homolog-like protein-like,
partial [Ornithorhynchus anatinus]
Length = 219
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 98/213 (46%), Gaps = 47/213 (22%)
Query: 204 DIDGTLRKLPRHLVAERAILQCLKK-------CPGNYLQALKAIPRTLRMMYVHSYQSFL 256
D GTL LP + + ER +L+ L + C +L +IP ++R+ YVH+Y S +
Sbjct: 1 DAKGTLALLPEYKLRERMLLRALNRYGVTEEGCTRGWL----SIPHSMRIFYVHAYCSKI 56
Query: 257 WNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPE 316
WN AAS R++ +G++ VV GDLV S++ HL P
Sbjct: 57 WNEAASFRLETYGSK-VVEGDLV----------------------SSEEKGREHL---PL 90
Query: 317 TDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINL 376
+D V ++A + + Y I VVLP+ G ++YP N V + Y +DG+
Sbjct: 91 SDR-------VHVISAEEEAANVYAIHQVVLPMVGHSIVYPKNKVGQWYRERLGRDGLQT 143
Query: 377 TESLHNVKEFSITSMTGNYRRVFQKPMDFEWEL 409
+ + +I G YR++ + P + + L
Sbjct: 144 CRFRVSALQLNI---PGCYRQILKYPRNVSYHL 173
>gi|448488574|ref|ZP_21607328.1| tRNA pseudouridine synthase D [Halorubrum californiensis DSM 19288]
gi|445695877|gb|ELZ47974.1| tRNA pseudouridine synthase D [Halorubrum californiensis DSM 19288]
Length = 497
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 89/335 (26%), Positives = 139/335 (41%), Gaps = 72/335 (21%)
Query: 15 PFDS-RGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVS 73
P D+ RGS +PE + LR L + DT + +S LG+ +AGTKDKR+V+
Sbjct: 52 PLDADRGS--YPELV---LRATL--RDWDTNDFARRLSDALGVSRERVSWAGTKDKRAVT 104
Query: 74 TQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDV 133
TQ TV + A L + G + L G L GN F I + V ++ +
Sbjct: 105 TQLFTVREVDADDLPEIR----GAEIEALGRAGRSLSFGDLAGNAFDIRVADAVDEAPER 160
Query: 134 IKASANSL--------------------GRNGFINYFGLQRFGSGSVPTHLVGATLLRGE 173
+ + L G NYFG QRFGS TH VG ++R +
Sbjct: 161 VAETVRDLRVFAGDGEGSPDGEEAEIVDAPVGVPNYFGQQRFGSRRPVTHFVGLAIVRDD 220
Query: 174 WKSAVKMIL-DPREGERNEISKAR-----------------------------------E 197
+ AV++ +P E E ++ AR +
Sbjct: 221 PREAVRLYAGNPAETEPDDTRAARDRVDAAFGLGGSEESGDDSAADDTDDLGADGTGDGD 280
Query: 198 YYKETDDIDGTLR--KLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSF 255
+ D I G LR + H +A+R + ++ AL+A+P L+ ++V++ QS
Sbjct: 281 WVACLDAIPGKLRFERSMVHRLADRGVAPDAPPDDEDWWHALEAVPSNLQRLFVNAAQSS 340
Query: 256 LWNHAASARVQKH-GTEHVVVGDLV-FCKGDDTEK 288
L+N S R+++ + V GD+V F GD E+
Sbjct: 341 LFNRIVSERLRRGLPFDRPVAGDVVCFADGDAPEE 375
>gi|418679016|ref|ZP_13240282.1| tRNA pseudouridine synthase D [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|418685300|ref|ZP_13246476.1| tRNA pseudouridine synthase D [Leptospira kirschneri serovar
Grippotyphosa str. Moskva]
gi|418740089|ref|ZP_13296469.1| tRNA pseudouridine synthase D [Leptospira kirschneri serovar
Valbuzzi str. 200702274]
gi|400320624|gb|EJO68492.1| tRNA pseudouridine synthase D [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|410739908|gb|EKQ84630.1| tRNA pseudouridine synthase D [Leptospira kirschneri serovar
Grippotyphosa str. Moskva]
gi|410752675|gb|EKR09648.1| tRNA pseudouridine synthase D [Leptospira kirschneri serovar
Valbuzzi str. 200702274]
Length = 405
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 118/246 (47%), Gaps = 18/246 (7%)
Query: 26 EQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRAS 85
++ GK+ F L K +T +AL ISK + G+AG KD+ + ++Q ++
Sbjct: 31 QKTGKWTIFRLQKSGWNTLDALLRISKESKVSIFEIGYAGKKDRHASTSQYIS-----CQ 85
Query: 86 KLAALNKRLIG-IRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRN 144
K + K L I+L + K+ L +GNRF + LR ++ ++I+ + +G+N
Sbjct: 86 KPLRVPKELTNVIQLDKVGFSKKSLSTELNVGNRFRLVLRNLLEREIELIQNNFEKIGKN 145
Query: 145 GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYYKETD 203
GFINY+ QRF L +G+ ++ +K+IL DP GE+ + AR+ K
Sbjct: 146 GFINYYDSQRFSRFHPEFRLPILPFFKGDAETCLKLILTDPFPGEKKQ---ARDRKKILY 202
Query: 204 DIDGTL---RKLPRHLVAERAILQCLK--KCPGN--YLQALKAIPRTLRMMYVHSYQSFL 256
D+ G KL + + E+ I LK K P Y + P +M + S+QS +
Sbjct: 203 DLWGNWSQCEKLSKSKL-EKNIFSNLKREKNPTQKIYSDLILRFPEEELLMLISSFQSLI 261
Query: 257 WNHAAS 262
WN S
Sbjct: 262 WNEFVS 267
>gi|71395375|ref|XP_802319.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70861647|gb|EAN80873.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 481
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 75/292 (25%), Positives = 118/292 (40%), Gaps = 68/292 (23%)
Query: 116 GNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWK 175
G + + LR + + ++K + SL GFINYFG QRF S + G LL+GE++
Sbjct: 170 GYAYRVRLRCIPQNHIPLVKPAMQSLEEKGFINYFGPQRFASYTKQNMHPGLHLLKGEFR 229
Query: 176 SAVKMILD--------PREGERNEISKAREYYKET------DDI--DGTLRKLPRHLVAE 219
+A +I+ E R + Y+ + D I D R + H A
Sbjct: 230 AAANIIVQQFYMDSDIAAEKRRRGAGFFKMYHSKAMGFRIPDHIKLDARRRSIAEHGTAL 289
Query: 220 RAIL-----------------QCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAAS 262
++IL + C +L+ + P +M VH + +F+WN +
Sbjct: 290 QSILDSALQAAALLGEDEEKESSIDPCEEAFLRVVG--PNAC-LMLVHEFLAFVWNDIVN 346
Query: 263 ARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDG 322
R Q++GT V+ GDLV + +P H
Sbjct: 347 QRFQRYGTFAVLPGDLV--------RRNPLASP-----------------------HSKE 375
Query: 323 RHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGI 374
N+V + + I+ GKYT DVVLPLPG + P N ++Y ++ GI
Sbjct: 376 YQNVV-FASKSGIDKGKYTFSDVVLPLPGVGIRLPENHTTDLYIVTLQRMGI 426
>gi|421107019|ref|ZP_15567579.1| tRNA pseudouridine synthase D [Leptospira kirschneri str. H2]
gi|410007933|gb|EKO61612.1| tRNA pseudouridine synthase D [Leptospira kirschneri str. H2]
Length = 405
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 116/246 (47%), Gaps = 18/246 (7%)
Query: 26 EQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRAS 85
++ GK+ F L K +T +AL ISK + G+AG KD+ + ++Q V+
Sbjct: 31 QKTGKWTIFRLQKSGWNTLDALLRISKESKVSIFEIGYAGKKDRHASTSQYVS-----CQ 85
Query: 86 KLAALNKRLIG-IRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRN 144
K + K L I+L + ++ L +GNRF + LR ++ + I+ + +G+N
Sbjct: 86 KPLRVPKELTNVIQLDKIGFSQKSLSTELNVGNRFRLVLRNLLEREIESIRNNFEKIGKN 145
Query: 145 GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYYKETD 203
GFINY+ QRF L +G+ ++ +K+IL DP GE+ + AR+ K
Sbjct: 146 GFINYYDSQRFSRFHPEFRLPILPFFKGDAETCLKLILTDPFPGEKKQ---ARDRKKILH 202
Query: 204 DIDGTL---RKLPRHLVAERAILQCLKK----CPGNYLQALKAIPRTLRMMYVHSYQSFL 256
D+ G KL + + E+ I LK+ Y + P +M + S+QS +
Sbjct: 203 DLWGNWSQCEKLSKSKL-EKNIFSNLKREKNPTQKTYSDLIFRFPEEELLMLISSFQSLI 261
Query: 257 WNHAAS 262
WN S
Sbjct: 262 WNEFVS 267
>gi|448450308|ref|ZP_21592207.1| tRNA pseudouridine synthase D [Halorubrum litoreum JCM 13561]
gi|445812160|gb|EMA62156.1| tRNA pseudouridine synthase D [Halorubrum litoreum JCM 13561]
Length = 491
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 86/318 (27%), Positives = 130/318 (40%), Gaps = 59/318 (18%)
Query: 42 DTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGD 101
DT + +S LGI +AGTKDKR+V+TQ TV A +L + G +
Sbjct: 73 DTNDFARRLSDALGISRERVSWAGTKDKRAVTTQLFTVRGIGADELPEIR----GAEIEA 128
Query: 102 FCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSL-------------------- 141
L G L GN F I + V D+ + + + L
Sbjct: 129 LGRAGRSLSFGDLAGNAFEIRVADAVDDAPERVADAVRDLRAFAGDGEAPPDGEGDVPIE 188
Query: 142 GRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYYK 200
G NYFG QRFGS THLVG + R + + AV++ +P E E ++ AR+
Sbjct: 189 ATVGVPNYFGQQRFGSRRPVTHLVGLAIAREDPREAVRLYAGNPAETEPDDTRAARDRVD 248
Query: 201 E--------------------TDDID--GTLRKLPRHLVAERAILQCLK---------KC 229
T D D L +P L ER+++ L
Sbjct: 249 AAFGVGEGSGSDDADRAAADGTGDGDWAACLDAIPGKLRFERSMVHRLADRDVDPDAPPD 308
Query: 230 PGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKH-GTEHVVVGDLVFCKGDDTEK 288
++ AL+A+P L+ ++V++ QS+ +N S R+++ + V GD+V C D
Sbjct: 309 DEDWWHALEAVPSNLQRLFVNAAQSYCFNRVVSERLRRGLPFDRPVAGDVV-CFADADAP 367
Query: 289 ELGCVNPEFEYESSNDAD 306
E G P+ + DAD
Sbjct: 368 E-GLYAPDTDRLQRVDAD 384
>gi|402467258|gb|EJW02586.1| TruD family tRNA pseudouridine synthase [Edhazardia aedis USNM
41457]
Length = 545
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 82/311 (26%), Positives = 122/311 (39%), Gaps = 83/311 (26%)
Query: 32 LRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQ---------------- 75
R + K N+DT EA +I+ ML I FAG KDKR+++ Q
Sbjct: 167 FRCTMKKINRDTIEACNVIASMLKIPREKICFAGNKDKRAITYQEITIEKVRFIDLYKLT 226
Query: 76 --------RVTVFKQRASKLAALNKRLIGIRL--------GDFC---------YVKEGLL 110
++T++ R + L A LIG R F V++ +
Sbjct: 227 FNCYKNNDKITLYNLRKTSLKAKLGNLIGNRFIIRIKPNQESFNEINNVSINNLVEKENI 286
Query: 111 LGQLLGN---------------RFTI----TLRGVVVDSEDVIKASANSLGR-------- 143
+ QL N + T+ + R + S + I S N R
Sbjct: 287 INQLFNNSADDQEAYQNEAGSEKMTVDEVNSKRMKIQTSANTIYDSKNHKNRLKELKKER 346
Query: 144 --NGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKE 201
GFINYFG QRFGS ++ H+VG L+ E+ A I+ + + + KA+E Y
Sbjct: 347 LEKGFINYFGHQRFGS-NMNNHIVGKHLINKEFDQAFDEIMKIGQFDSETVKKAKELYN- 404
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKKCPGN-----YLQALKAIPRTLRMMYVHSYQSFL 256
+ + P ER I C G + + +K I R M+Y HSYQS+
Sbjct: 405 SKNFSEAFDSFPLRNKVERCI------CKGKMKNLEFYKIIKNIQRETIMLYHHSYQSYK 458
Query: 257 WNHAASARVQK 267
+N S VQ+
Sbjct: 459 FNIKLSNLVQE 469
>gi|384173438|ref|YP_005554815.1| tRNA pseudouridine synthase [Arcobacter sp. L]
gi|345473048|dbj|BAK74498.1| tRNA pseudouridine synthase [Arcobacter sp. L]
Length = 332
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 77/147 (52%), Gaps = 2/147 (1%)
Query: 27 QLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASK 86
Q G FL + K N DT E + ++K LGI G+AG KDKR+ +TQ +T+ K+ + +
Sbjct: 35 QSGSFLVLKIKKTNCDTWELIDRLAKFLGIYSNEIGYAGLKDKRATTTQYITIPKKYSKE 94
Query: 87 LAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGF 146
+ + I I L F + + L +G L GNRF I L V V + I+ + +NG
Sbjct: 95 IKLFKNKKIEI-LETFLH-NQKLNIGDLEGNRFKINLHDVEVADINHIQKIIKIITKNGM 152
Query: 147 INYFGLQRFGSGSVPTHLVGATLLRGE 173
NYFG QRFG + +++ GE
Sbjct: 153 PNYFGYQRFGKEVIENLEKAKSVIYGE 179
>gi|407843903|gb|EKG01686.1| hypothetical protein TCSYLVIO_007309 [Trypanosoma cruzi]
Length = 1472
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 74/292 (25%), Positives = 116/292 (39%), Gaps = 68/292 (23%)
Query: 116 GNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWK 175
G + + LR + + ++K + SL GFINYFG QRF S + G LL+GE++
Sbjct: 904 GYAYRVRLRCIPQNHLPLVKPAMQSLEEKGFINYFGPQRFASYTKQNMHPGLHLLKGEFR 963
Query: 176 SAVKMILD--------PREGERNEISKAREYYKET------DDI--DGTLRKLPRHLVAE 219
+A +I+ E R + Y+ + D I D R + H A
Sbjct: 964 AAANIIVQQFYMDSDIAAEKRRRGAGFFKMYHSKAMGFRIPDHIKLDARRRSIAEHGTAL 1023
Query: 220 RAIL-----------------QCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAAS 262
++IL + C + L+ + +M VH + +F+WN +
Sbjct: 1024 QSILDSALQAAALLGEDEEKGSSIDPCEEAF---LRVVGPNACLMLVHEFLAFVWNDIVN 1080
Query: 263 ARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDG 322
R Q++GT V+ GDLV + S H E
Sbjct: 1081 QRFQRYGTFAVLPGDLV----------------------RRNPLASPHSKE--------- 1109
Query: 323 RHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGI 374
+ V + + I+ GKYT DVVLPLPG + P N ++Y ++ GI
Sbjct: 1110 -YQNVVFASKSGIDKGKYTFSDVVLPLPGVGIRLPENHTTDLYIVTLQRMGI 1160
>gi|303389704|ref|XP_003073084.1| pseudouridine synthase-like protein [Encephalitozoon intestinalis
ATCC 50506]
gi|303302228|gb|ADM11724.1| pseudouridine synthase-like protein [Encephalitozoon intestinalis
ATCC 50506]
Length = 487
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 94/174 (54%), Gaps = 23/174 (13%)
Query: 111 LGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLL 170
LG L GNRF+I LRG +D K +L R GF+NYFG QRFG+ + H +G +L
Sbjct: 257 LGDLKGNRFSIALRGF----KD--KGLIENLER-GFLNYFGQQRFGN-KLKNHEIGYEIL 308
Query: 171 RGEWKSAVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCP 230
+++ AV I+ + G+ E+ +Y + DG E+ IL+C K
Sbjct: 309 TKKYEEAVNKIM--KGGKCYELYIDGKYEEAMSLGDGV----------EKYILKCKSKGI 356
Query: 231 GNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGD 284
+ + R LRM+Y+HSYQS +N A ++R++ +GT VV GD+V+ G+
Sbjct: 357 KEK-DMIYGLRRELRMLYLHSYQSLKFNEAINSRME-YGT-SVVEGDMVYVDGE 407
>gi|168698520|ref|ZP_02730797.1| tRNA pseudouridine synthase D family protein [Gemmata obscuriglobus
UQM 2246]
Length = 388
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 112/240 (46%), Gaps = 15/240 (6%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G F + L K T +AL + + + R + G KD+ +V++Q +T+F R K
Sbjct: 24 GDFALYRLDKTGWTTPDALAALRRRWQVDHRRLSYGGLKDRHAVTSQHLTIF--RGPKRN 81
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
++R+ LG C E ++ NRFT+TLR + +A+ + G N
Sbjct: 82 LTHERVTVTYLGQ-CV--EPFTAQEIRANRFTVTLRSLNAAGVSRAEATLREVADAGLPN 138
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAR----EYYKETD 203
YF QRFGS V ++ G ++ A+ + L P E +R + + + E + +
Sbjct: 139 YFDDQRFGSVGEQQEFVAKEMVFGRFERALWLALAAPYEHDRADAKREKATLTELWGKWP 198
Query: 204 DIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASA 263
+ KLP+ R+++ L P ++ A+ + L+ +Y+ +YQS+LWN +A
Sbjct: 199 ECQA---KLPKGHA--RSLVSYLAAHPTDFKGAVARLRPELQGLYLSAYQSYLWNKMLAA 253
>gi|419610352|ref|ZP_14144417.1| tRNA pseudouridine synthase D [Campylobacter coli H8]
gi|380590136|gb|EIB11162.1| tRNA pseudouridine synthase D [Campylobacter coli H8]
Length = 372
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 84/152 (55%), Gaps = 3/152 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
GK L H+ K++ T EAL ++S++ G+ R FG+AG KDKR + Q +++ K+ S LA
Sbjct: 46 GKHLILHINKKDLSTNEALRILSELSGVKMRDFGYAGLKDKRGSTFQYLSMPKKFESFLA 105
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ + I L F + + L +G L GN F I L+ V+ ++ + +L + GF N
Sbjct: 106 NFSHPKLKI-LETFIH-ENKLRIGHLKGNSFFIRLKKVLPSDALKLEQALINLDKQGFAN 163
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM 180
YFG QRFG + G +LRG+ VKM
Sbjct: 164 YFGYQRFGKFG-DNYKEGLEILRGKKMKNVKM 194
>gi|150402935|ref|YP_001330229.1| tRNA pseudouridine synthase D [Methanococcus maripaludis C7]
gi|150033965|gb|ABR66078.1| tRNA pseudouridine synthase D TruD [Methanococcus maripaludis C7]
Length = 389
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 116/237 (48%), Gaps = 12/237 (5%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G + + L K + +A+ +SK + + G+ G KD+ +++TQ V++ ++
Sbjct: 24 GNYSLYKLQKNGIENLKAISYLSKNFEVPTKEIGYCGLKDRHAITTQYVSI----PNEYG 79
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRN-GFI 147
L+ ++L +K+ L +G+L GNRF I R VD + +K + N + G
Sbjct: 80 KLSLDEDNLKLEYVGTIKKPLKIGKLYGNRFEIIARA--VDKNEFLKIADNIRALSLGAP 137
Query: 148 NYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPR-EGERNEISKAREYY-KETDDI 205
NY+ QRFGS + +L+G ++ VK++L + E+ +I + + K +
Sbjct: 138 NYYDEQRFGS-VFNGKFIAKEILKGNYEEVVKILLTSYTKSEKKQIKDLKRFIDKNWGNW 196
Query: 206 DGTLRKLPRHLVAERAILQCLK--KCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHA 260
D L+ + + + + +K K ++ ++ K + L+ +++ +YQS+LWN
Sbjct: 197 DECLKYIDKKQIKSKMFRNMVKSLKYENDFKKSFKYMDNRLKELFISAYQSYLWNEC 253
>gi|449681545|ref|XP_002160335.2| PREDICTED: uncharacterized protein LOC100210112 [Hydra
magnipapillata]
Length = 419
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 92/215 (42%), Gaps = 60/215 (27%)
Query: 318 DHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLT 377
+H +G ++ +T DI S Y+I DVVLPLPG + YP N + +VY + DG+++
Sbjct: 256 EHQNG-YDTSYELTDKDIESSTYSIYDVVLPLPGYDMRYPSNGIRQVYEEMLVADGLDIN 314
Query: 378 ESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVK 437
+ +KE S++G R + KP + +W ++ Y D PL ++
Sbjct: 315 NMRNKIKEL---SLSGKLRNIIAKPTNMDWRVIPYDDYQIPL---------------LLN 356
Query: 438 EEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQM 497
+ E + G + H +S+ G K
Sbjct: 357 DYELLTGKE------------------------------------HPKSIEG-----KNK 375
Query: 498 ALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 532
A+ L TLP+S YAT A+RE+L + +S LN
Sbjct: 376 AVMLRFTLPASSYATSALREVLSSESSFEVQCNLN 410
>gi|342186658|emb|CCC96145.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 664
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 108/253 (42%), Gaps = 21/253 (8%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA-A 89
F F + K N D E L+++ + + AG KDKR+V+ QR ++ +
Sbjct: 301 FTHFLVRKRNLDMMELRILLAEHFHVPVDTVCTAGLKDKRAVAYQRCSIPRTSWQPCQEG 360
Query: 90 LNKRLIGIRLGD---FCYVKEG-------LLLGQLLGNRFTITLRGVVVDSEDVIKASAN 139
+K L I GD + + E + +G+L GN FTI LR V S +
Sbjct: 361 GDKVLHLIWPGDPTSYVEILEASGPHTVPVAIGELRGNMFTIHLRDVRGMSPSQMTQRVR 420
Query: 140 SLGRNGFINYFGLQRFGSGS-VPTHLVGATLLRGEWKSAVKMILDPREG------ERNEI 192
+ GF+NYFG QRF + T VG +L G W AV+ +L G R E+
Sbjct: 421 QIETQGFLNYFGQQRFSENTKCVTDHVGVHILAGRWPEAVRCLLSGVPGLYNSFPARMEL 480
Query: 193 SKAREYYKETDDIDGTLRKLPRHLVA---ERAILQCLKKCPGNYLQALKAIPRTLRMMYV 249
++ I L +L R A E +L C +AL +P R +++
Sbjct: 481 RHVPATSRDAQCIVQALSQLHRSKFAALTEADVLGCTGYWKELCYEALHKVPYAFRALWL 540
Query: 250 HSYQSFLWNHAAS 262
H+ Q ++N A S
Sbjct: 541 HAAQGLIFNRALS 553
>gi|220916569|ref|YP_002491873.1| tRNA pseudouridine synthase D TruD [Anaeromyxobacter dehalogenans
2CP-1]
gi|219954423|gb|ACL64807.1| tRNA pseudouridine synthase D TruD [Anaeromyxobacter dehalogenans
2CP-1]
Length = 455
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 79/278 (28%), Positives = 130/278 (46%), Gaps = 31/278 (11%)
Query: 14 NPFDSRGSENWP---EQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKR 70
P D + +E+W + G + + + K+ T EA+ I I S + G KDK+
Sbjct: 6 RPEDFQVTESWKFDEDPRGAWFVYLMDKQKLSTFEAVDRICTRFKIPRASVSYCGLKDKQ 65
Query: 71 SVSTQRVTVFKQRASKLAALNKRLI-----GIRLGDFCYVKEGLLLGQLLGNRFTITLRG 125
+TQ L AL +R I +RL + L NRF +T+R
Sbjct: 66 GRTTQ-----------LVALERREIELQDTDLRLKPLGRSRTRLSAANTTSNRFAVTVRD 114
Query: 126 VVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DP 184
+ D + AS + R G +NYF QRFGS + L+RG+++ A++ +L P
Sbjct: 115 LGEDDVARLPASVAEVRRLGVVNYFDSQRFGSLKHGQGFIVKDLMRGDFEIALRNVLARP 174
Query: 185 REGERNEISKAREYYKE-TDDIDGTLRKLPRHLVAER--AILQCLKKCPGNYLQALKAIP 241
E +++ +K + ++KE + D R+ P + AER A+++ L+ P +Y AL
Sbjct: 175 SELDQSGDAKVKAFWKEHWGEWD---RRNP-NPGAERYQAVVKWLRDHPEDYRGALLRTE 230
Query: 242 RTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLV 279
R + V +YQS+LWN V+++ E V + LV
Sbjct: 231 PRWRGLQVFAYQSWLWNEG----VKQYLREVVGIQRLV 264
>gi|407404904|gb|EKF30172.1| hypothetical protein MOQ_006024 [Trypanosoma cruzi marinkellei]
Length = 1476
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 75/292 (25%), Positives = 117/292 (40%), Gaps = 68/292 (23%)
Query: 116 GNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWK 175
G + + LR + + ++K + SL GFINYFG QRF S + G LL+GE++
Sbjct: 904 GYAYRLRLRCIPQNHLPLVKPAMKSLEEKGFINYFGPQRFASYTKQNMHPGLHLLKGEFR 963
Query: 176 SAVKMILD--------PREGERNEISKAREYYKET------DDI--DGTLRKLPRHLVAE 219
+A +I+ E R + Y+ + D I D R + H A
Sbjct: 964 AAANIIVQQFYMDADIAAEKRRRGAGFVKMYHSKAMGFRLPDRIKLDVKRRSIAEHGTAL 1023
Query: 220 RAIL-----------------QCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAAS 262
++IL + C +L+ + P +M VH + +F+WN +
Sbjct: 1024 QSILDSALQAAALLGEDEEKGSSIDPCEEAFLRVVG--PNAC-LMLVHEFLAFVWNDIVN 1080
Query: 263 ARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDG 322
R Q++GT V+ GDLV + S H E
Sbjct: 1081 QRFQRYGTFAVLPGDLV----------------------RRNPLASPHSKE--------- 1109
Query: 323 RHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGI 374
+ V + + I+ GKYT DVVLPLPG + P N ++Y ++ GI
Sbjct: 1110 -YQNVVFASKSGIDKGKYTFSDVVLPLPGLGIRLPENHTTDLYIVTLQRMGI 1160
>gi|337286643|ref|YP_004626116.1| tRNA pseudouridine synthase D TruD [Thermodesulfatator indicus DSM
15286]
gi|335359471|gb|AEH45152.1| tRNA pseudouridine synthase D TruD [Thermodesulfatator indicus DSM
15286]
Length = 384
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 126/285 (44%), Gaps = 24/285 (8%)
Query: 25 PEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRA 84
PE G F + LYK T + +G I++ L + + F G KD+ ++S Q VT+
Sbjct: 20 PEPQGDFALYRLYKRGATTWDVIGDIARRLRLKASAIQFGGLKDRHAISYQYVTIRHGPK 79
Query: 85 SKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRN 144
+ N L LG K + +L GN F + +R V + E + + A + R
Sbjct: 80 KDIKGKNYEL--SYLGQ---TKTPMSKARLKGNFFRLLVREVKISPEKLSREIA-LISRY 133
Query: 145 GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYY----K 200
G +NYF QRFGS L+ G ++ A+ ++L EG + E+ + + K
Sbjct: 134 GVVNYFDEQRFGSVKHGLGFAVKELILGHYERALYLLLA--EGSQYEMKRTEAFRKCLKK 191
Query: 201 ETDDIDGTLRKLPRHLVAERAILQCL---KKCPGNYLQALKAIPRTLRMMYVHSYQSFLW 257
+ L P ER +L+ L K + +A + R +M H+YQ+++W
Sbjct: 192 NWPNFSACLDLAPSPW--ERRLLEFLASHKPSKRTFKRAFALVDREYLLMLCHAYQAYIW 249
Query: 258 NHAASARVQKHGTEHV----VVGDLVFCKG---DDTEKELGCVNP 295
N ++ G + + ++G+L+F + + TE LG P
Sbjct: 250 NETVKLYLKNLGLKLLPVPYLLGELLFYRDFPEELTEAILGTKIP 294
>gi|294867265|ref|XP_002765033.1| tRNA pseudouridine synthase D, putative [Perkinsus marinus ATCC
50983]
gi|239864913|gb|EEQ97750.1| tRNA pseudouridine synthase D, putative [Perkinsus marinus ATCC
50983]
Length = 219
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 86/165 (52%), Gaps = 13/165 (7%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+++ F L+K++ T++AL +S+ GI + + AG KD++++++QRV+V + KL
Sbjct: 60 GEWIHFTLWKKDLTTRDALADVSRKTGISMKEWCVAGWKDRKAITSQRVSVRAELEEKLK 119
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSE----DVIKASANSLGRN 144
+ IRL D V E L G GNRF ITLR D ++A +S+ N
Sbjct: 120 SYENG-NSIRLSDLS-VGEQLKAGHHDGNRFQITLRDFPFTLSSPDFDAVEALLDSIKNN 177
Query: 145 GFINYFGLQRFGSGS----VPTHLVGATLLRGEWKSAVKMILDPR 185
G NY GLQRFG+ + HL+ R + V MIL R
Sbjct: 178 GVFNYAGLQRFGAFGQAFRIGRHLIAE---RADLAVTVAMILTER 219
>gi|197121775|ref|YP_002133726.1| tRNA pseudouridine synthase D TruD [Anaeromyxobacter sp. K]
gi|196171624|gb|ACG72597.1| tRNA pseudouridine synthase D TruD [Anaeromyxobacter sp. K]
Length = 455
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 132/273 (48%), Gaps = 21/273 (7%)
Query: 14 NPFDSRGSENWP---EQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKR 70
P D + +E+W + G + + + K+ T EA+ I I S + G KDK+
Sbjct: 6 RPEDFQVTESWKFDEDPRGAWFVYLMDKQKLSTFEAVDRICTRFKIPRASVSYCGLKDKQ 65
Query: 71 SVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDS 130
+TQ V + ++R +L + +RL + L NRF +T+R + D
Sbjct: 66 GRTTQLVAI-ERREIELQDTD-----LRLKPLGRSRTPLSAANTTSNRFAVTVRDLGEDD 119
Query: 131 EDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGER 189
+ AS + R G +NYF QRFGS + L+RG+++ A++ +L P E ++
Sbjct: 120 VARLPASVAEVRRLGVVNYFDSQRFGSLKHGQGFIVKDLMRGDFEIALRNVLARPSELDQ 179
Query: 190 NEISKAREYYKE-TDDIDGTLRKLPRHLVAER--AILQCLKKCPGNYLQALKAIPRTLRM 246
+ +K + ++KE + D R+ P + AER A+++ L+ P +Y AL R
Sbjct: 180 SGDAKVKAFWKEHWGEWD---RRNP-NPGAERYQAVVKWLRDHPEDYRGALLRTEPRWRG 235
Query: 247 MYVHSYQSFLWNHAASARVQKHGTEHVVVGDLV 279
+ V +YQS+LWN V+++ E V + LV
Sbjct: 236 LQVFAYQSWLWNEG----VKQYLREVVGIQRLV 264
>gi|340623199|ref|YP_004741650.1| tRNA pseudouridine synthase D [Methanococcus maripaludis X1]
gi|339903465|gb|AEK18907.1| tRNA pseudouridine synthase D [Methanococcus maripaludis X1]
Length = 389
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 71/313 (22%), Positives = 143/313 (45%), Gaps = 31/313 (9%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G + + L K + +A+ +SK + + G+ G KD+ +++TQ V++ K+ KL+
Sbjct: 24 GNYSLYTLQKNGIENLKAISYLSKNFEVPTKEIGYCGLKDRHAITTQYVSIPKEYG-KLS 82
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRN---G 145
L +L +++ L +G+L GNRF I R VD ++ +K + N RN G
Sbjct: 83 LDEDNL---KLEYVGTIEKPLKIGRLYGNRFEIIARA--VDKDEFLKIADNI--RNLSSG 135
Query: 146 FINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPR-EGERNEISKAREYY-KETD 203
NY+ QRFGS + +L+G ++ VK++L + E+ ++ + + K
Sbjct: 136 APNYYDDQRFGS-VFNGKFIAKEILKGNYEEVVKILLTSYTKSEKKQLKDLKRFIAKNWG 194
Query: 204 DIDGTLRKLPRHLVAERAILQCLKKCP--GNYLQALKAIPRTLRMMYVHSYQSFLWNHAA 261
+ D L + + + + +K ++ +A K + L+ +++ +YQS+LWN
Sbjct: 195 NWDECLEYIDKKQIRSKMFRNMVKSLTYENDFKKAFKYVDNRLKELFISAYQSYLWNECL 254
Query: 262 SARVQ----KHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPET 317
++ K +V F ++ E+EL C E ++ + V +
Sbjct: 255 KEFLKEVIPKENRIYVDYSCGTFLFYENIEEELFCKLKEMDFPTI-----------VSDV 303
Query: 318 DHPDGRHNLVKTV 330
++ D ++K +
Sbjct: 304 EYSDSEKRIIKAI 316
>gi|302389058|ref|YP_003824879.1| tRNA pseudouridine synthase D TruD [Thermosediminibacter oceani DSM
16646]
gi|302199686|gb|ADL07256.1| tRNA pseudouridine synthase D TruD [Thermosediminibacter oceani DSM
16646]
Length = 387
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 107/237 (45%), Gaps = 17/237 (7%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G + + L K + +T +AL IS+ + G G KD+ +++ Q ++V ++
Sbjct: 24 GPYRIYLLEKRHWNTMDALKFISRENKVPLSKIGSGGRKDRHALTYQYISVPREYELHFE 83
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
N RL + D +V +L G N F ITLR + S D IK+ + + G+ N
Sbjct: 84 KPNVRLQFVGFAD-DFVSPAVLEG----NYFEITLRRINPGSVDGIKSRLSEVEEFGYPN 138
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAR-----EYYKETD 203
+F QRFGS P + +++ + A+K+ E KAR E + +
Sbjct: 139 FFDDQRFGSVEDPGEFIAERIIKKHYNGALKLYFTTVHPEDKREEKARKRKIAELWGRWE 198
Query: 204 DIDGTLRKLPRHLVAERAILQCL--KKCPGNYLQALKAIPRTLRMMYVHSYQSFLWN 258
DI R E+ I++ L + + AL AIP+ M+ +YQSFLWN
Sbjct: 199 DILPLCRT-----PVEKDIIKILLEGQSKKHLAAALNAIPKEELSMFFSAYQSFLWN 250
>gi|390940217|ref|YP_006403954.1| tRNA pseudouridine synthase, TruD family [Sulfurospirillum barnesii
SES-3]
gi|390193324|gb|AFL68379.1| tRNA pseudouridine synthase, TruD family [Sulfurospirillum barnesii
SES-3]
Length = 363
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 106/239 (44%), Gaps = 37/239 (15%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L H+ K++ T + L +S++ G R FG+AG KDK ++TQ V++ K KLA
Sbjct: 37 GEHLVLHVRKKDMTTWDMLQYLSEVTGCKVRDFGYAGLKDKEGMTTQYVSLHKSFEPKLA 96
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ I++ D Y + G L GNRF + L+ V ++ + + GF N
Sbjct: 97 NFSHE--KIKILDTTYHNNKIRTGHLKGNRFFVRLKKVSHIDAKKLQDGLKKIAKEGFPN 154
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWK------------SAVKMILDPREGERNEISKAR 196
+FG QRFG +L G +L G K + + + +R EIS+
Sbjct: 155 FFGYQRFGIDG-DNYLKGKAILEGSRKERNPKMKEFFINAYQSYLFNNWLSKRIEISRLI 213
Query: 197 EYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMY---VHSY 252
E + +D + T LP+ +V + LK P+ +MM+ +H Y
Sbjct: 214 EEFNVSDGVRST--NLPKEMV-----------------ENLKKQPQFFKMMHGDVLHHY 253
>gi|294892289|ref|XP_002773989.1| tRNA pseudouridine synthase D, putative [Perkinsus marinus ATCC
50983]
gi|239879193|gb|EER05805.1| tRNA pseudouridine synthase D, putative [Perkinsus marinus ATCC
50983]
Length = 504
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 119/260 (45%), Gaps = 23/260 (8%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
++R L+K +T + ++S++ P +AG KDK + + Q +T+ + L
Sbjct: 108 YVRLTLHKTKIETDTCIRIMSEVAKCDPAVITYAGRKDKGADTMQYITLPQVHFQNLFFA 167
Query: 91 NKR--LIGIRLGDFCYVKEGLLLGQLLGNRFTITLRG---VVVDS--EDVIKASANSLGR 143
++R + LGD V+ L G L GN F +T G +V +S ++V+ +S
Sbjct: 168 SRRGEALPFELGDPVGVRAPLTWGALEGNHFKLTFVGQPRIVGNSKHDEVLTKIRDS--- 224
Query: 144 NGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETD 203
GF+N+FGLQRFG+ + +VG L GE AV +L K RE +
Sbjct: 225 -GFVNFFGLQRFGAPRFNSPVVGRYLENGEPLEAVVAMLI------GLCPKGRE-WTALK 276
Query: 204 DIDGTLRKLPRHLVA----ERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNH 259
+G +R + L + L + + +AI YVH++ S LWN+
Sbjct: 277 LTNGAIRSVYESLSSGYEGHEMRLLLARAAKQEDVDWQRAISPRQWSTYVHAWHSLLWNY 336
Query: 260 AASARVQKHGTEHVVVGDLV 279
RV + GT + + GD+V
Sbjct: 337 MVQFRVNEFGT-NPIEGDMV 355
>gi|45357577|ref|NP_987134.1| tRNA pseudouridine synthase D [Methanococcus maripaludis S2]
gi|62901434|sp|Q6M1A3.1|TRUD1_METMP RecName: Full=Probable tRNA pseudouridine synthase D 1; AltName:
Full=tRNA pseudouridine(13) synthase; AltName: Full=tRNA
pseudouridylate synthase D 1; AltName: Full=tRNA-uridine
isomerase D 1
gi|45047137|emb|CAF29570.1| conserved hypothetical protein [Methanococcus maripaludis S2]
Length = 389
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 117/238 (49%), Gaps = 16/238 (6%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G + + L K + +A+ +SK + + G+ G KD+ +++TQ V++ K+ KL+
Sbjct: 24 GNYFLYKLQKNGIENLKAISYLSKNFEVPTKEIGYCGLKDRHAITTQYVSIPKEYG-KLS 82
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRN---G 145
L +L +++ L +G+L GNRF I R VD ++ +K + N RN G
Sbjct: 83 LDEDNL---KLEYVGTIEKPLKIGRLYGNRFEIIARA--VDKDEFLKIADNI--RNLSSG 135
Query: 146 FINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPR-EGERNEISKAREYY-KETD 203
NY+ QRFGS + +L+G ++ VK++L + E+ ++ + + K
Sbjct: 136 APNYYDDQRFGS-VFNGKFIAKEILKGNYEEVVKILLTSYTKSEKKQLKDLKRFIAKNWG 194
Query: 204 DIDGTLRKLPRHLVAERAILQCLKKCP--GNYLQALKAIPRTLRMMYVHSYQSFLWNH 259
+ D L + + + + +K ++ +A K + L+ +++ +YQS+LWN
Sbjct: 195 NWDECLEYIDKKQIRSKMFRNMVKSLTYENDFKKAFKYVDNRLKELFISAYQSYLWNE 252
>gi|419613634|ref|ZP_14147431.1| tRNA pseudouridine synthase D [Campylobacter coli H56]
gi|380594092|gb|EIB14901.1| tRNA pseudouridine synthase D [Campylobacter coli H56]
Length = 372
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 84/152 (55%), Gaps = 3/152 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L H+ K++ T EAL ++S++ G+ R FG+AG KDKR + Q +++ K+ S LA
Sbjct: 46 GEHLILHINKKDLSTNEALRILSELSGVKMRDFGYAGLKDKRGSTFQYLSMPKKFESFLA 105
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ + I L F + + L +G L GN F I L+ V+ ++ + +L + GF N
Sbjct: 106 NFSHPKLKI-LETFIH-ENKLRIGHLKGNSFFIRLKKVLPSDALKLEQALINLDKQGFAN 163
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM 180
YFG QRFG + G +LRG+ VKM
Sbjct: 164 YFGYQRFGKFG-DNYKEGLEILRGKKMKNVKM 194
>gi|268679808|ref|YP_003304239.1| tRNA pseudouridine synthase D TruD [Sulfurospirillum deleyianum DSM
6946]
gi|268617839|gb|ACZ12204.1| tRNA pseudouridine synthase D TruD [Sulfurospirillum deleyianum DSM
6946]
Length = 361
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 80/297 (26%), Positives = 126/297 (42%), Gaps = 52/297 (17%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L H+ K++ T + L +S++ G R FG+AG KDK ++TQ +++ K +KLA
Sbjct: 37 GEHLVLHVRKKDMTTWDMLQYLSEVSGCKVRDFGYAGLKDKEGMTTQYISLHKSFEAKLA 96
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ I++ + Y + G L GNRF I L+ V ++ + + GF N
Sbjct: 97 NFSHE--KIKILEKTYHNNKIRTGHLKGNRFFIRLKKVSHIDAKKLQDGLKKIAKEGFPN 154
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWK------------SAVKMILDPREGERNEISKAR 196
+FG QRFG +L G +L G K + + + +R EIS+
Sbjct: 155 FFGYQRFGIDG-DNYLKGKAILEGSRKERNPKMKEFFINAYQSYLFNNWLSKRIEISRLI 213
Query: 197 EYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMY---VHSYQ 253
E + +D T LP+ +VA LK P+ +MM+ +H Y
Sbjct: 214 EEFGVSDGARAT--NLPKEMVAN-----------------LKKQPQFFKMMHGDVLHHYP 254
Query: 254 SFLWNHAASARVQKHGTEHV---------VVGDLVFCKGDDTEKELGCVNPEFEYES 301
A A V ++ TE + + G LV K E E G + E ES
Sbjct: 255 ------AGKAFVCENVTEELPRFLERGISIAGWLVGGKNIRAEHEAGVIEQEMFKES 305
>gi|157738317|ref|YP_001491001.1| tRNA pseudouridine synthase [Arcobacter butzleri RM4018]
gi|315636604|ref|ZP_07891838.1| pseudouridylate synthase [Arcobacter butzleri JV22]
gi|157700171|gb|ABV68331.1| tRNA pseudouridine synthase [Arcobacter butzleri RM4018]
gi|315479113|gb|EFU69812.1| pseudouridylate synthase [Arcobacter butzleri JV22]
Length = 332
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 70/132 (53%), Gaps = 2/132 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G FL + K N DT E + I+K L + G+AG KDKR+ +TQ +T+ K+ + ++
Sbjct: 37 GNFLVLKIKKTNCDTWELIDRIAKFLNVYSNEIGYAGLKDKRATTTQYITIPKKYSKEIK 96
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ I I L F + E L +G L GNRF I L V + + I+ + +NG N
Sbjct: 97 NFRSKKIEI-LETFLH-NEKLNIGDLEGNRFKINLYDVEISDINHIQKIIKIISKNGMPN 154
Query: 149 YFGLQRFGSGSV 160
YFG QRFG V
Sbjct: 155 YFGYQRFGKEVV 166
>gi|417783871|ref|ZP_12431584.1| tRNA pseudouridine synthase D [Leptospira interrogans str. C10069]
gi|409952910|gb|EKO07416.1| tRNA pseudouridine synthase D [Leptospira interrogans str. C10069]
Length = 405
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 114/245 (46%), Gaps = 16/245 (6%)
Query: 26 EQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRAS 85
++ GK++ F L K +T +AL ISK + G+AG KD+ + ++Q ++
Sbjct: 31 QKTGKWMIFRLQKSGWNTLDALLRISKESKVSIFEIGYAGKKDRHASTSQYIS-----CQ 85
Query: 86 KLAALNKRLIG-IRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRN 144
K + K L I+L + K+ L +GNRF + LR ++ + I+ + + +N
Sbjct: 86 KPLRIPKELTKVIQLDKIGFSKKSLSTELNVGNRFQLVLRNLLEKEIESIRNNFEKITKN 145
Query: 145 GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYYKETD 203
GFINY+ QRF L +G+ ++ +K+IL DP GE+ + AR+ K
Sbjct: 146 GFINYYDSQRFSRFHSEFRLPILPFFKGDAETCLKLILTDPFPGEKKQ---ARDRKKILY 202
Query: 204 DIDGTLRKLPRHLVA--ERAILQCL----KKCPGNYLQALKAIPRTLRMMYVHSYQSFLW 257
D+ G + + + E+ I L K Y + P +M V S+QS +W
Sbjct: 203 DLWGNWSQCEKWSKSKLEKNIFSNLKKEKKTTQKTYSDLILRFPEEELLMLVSSFQSLIW 262
Query: 258 NHAAS 262
N S
Sbjct: 263 NEFVS 267
>gi|78045172|ref|YP_360450.1| tRNA pseudouridine synthase D family protein [Carboxydothermus
hydrogenoformans Z-2901]
gi|77997287|gb|ABB16186.1| tRNA pseudouridine synthase D family protein [Carboxydothermus
hydrogenoformans Z-2901]
Length = 387
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 116/257 (45%), Gaps = 11/257 (4%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G F + L K +T +AL I+ G+ G+ G KD+ + Q +TV RA+K
Sbjct: 24 GDFKVYLLEKRYWNTLDALQRIAAENGLRLSEIGYGGRKDRYGHTFQYITV---RATK-- 78
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVV-VDSEDVIKASANSLGRNGFI 147
L R ++L Y+ + + GN F ITLR + + D+IK N + + GF
Sbjct: 79 NLTTREKNLKLTLMGYLNLPMSPELIAGNHFEITLRALSGEEGRDLIKRGEN-VKKYGFP 137
Query: 148 NYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDDIDG 207
NYF QRFGS LL G A+K+ L E ++ +K R+ + + +
Sbjct: 138 NYFDDQRFGSYDKEQGFFAKKLLLGHLNGALKIYLTSIYPEESKEAKERKRFFMANWGNW 197
Query: 208 TLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQK 267
++ ER I L+K P N+ A+ IP+ +Y +YQ +L+N+ +
Sbjct: 198 SVCLEASKTRVEREIFSLLEKEPKNFAGAINLIPKEQLSLYFAAYQGYLYNNLLKEVLLN 257
Query: 268 HGTEHV----VVGDLVF 280
G E VV D +F
Sbjct: 258 QGIELRAYPGVVDDYLF 274
>gi|225850126|ref|YP_002730360.1| tRNA pseudouridine synthase D [Persephonella marina EX-H1]
gi|225645374|gb|ACO03560.1| tRNA pseudouridine synthase D [Persephonella marina EX-H1]
Length = 390
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 113/254 (44%), Gaps = 26/254 (10%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVT---------- 78
G + F L K N T + + ++ + P GFAG KD+ +++ Q ++
Sbjct: 29 GDYQIFILTKSNLSTIQVVRFLASFYRLKPSDIGFAGLKDRFAITKQYLSFPSDINIPER 88
Query: 79 -VFKQRASKLAALNK----RLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDV 133
VF+ R K + R L Y + LG GN F+I + + + +
Sbjct: 89 VVFQLRNGKWEKTDNVDFSRSTAFSLEKIGYSDSPIKLGDNRGNLFSIKIHNLNREMRRL 148
Query: 134 IKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEIS 193
+ + GF NYFG QRFGS + LL+GE + A+K+ + +N +
Sbjct: 149 FYENLDRAKIYGFPNYFGEQRFGSVKGRNDFIFLYLLKGETEKALKLYFSIKGSVKNWGN 208
Query: 194 KAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQ 253
+ Y D+ G L ER ++ LK+ ++ +A++ +P+ +R+M+ ++Q
Sbjct: 209 WEKLY----RDLRGVLEN------YERDLILGLKRGL-SFEKAVRILPKNIRLMFNFAFQ 257
Query: 254 SFLWNHAASARVQK 267
S+LWN ++K
Sbjct: 258 SYLWNEYLRRYIEK 271
>gi|134046696|ref|YP_001098181.1| tRNA pseudouridine synthase D [Methanococcus maripaludis C5]
gi|132664321|gb|ABO35967.1| Pseudouridylate synthase [Methanococcus maripaludis C5]
Length = 389
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 64/281 (22%), Positives = 133/281 (47%), Gaps = 18/281 (6%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G + + L K + +A+ +SK L + + G+ G KD+ +++TQ V++ ++
Sbjct: 24 GNYSLYALQKNGIENLKAISYLSKNLEVPTKEIGYCGLKDRHAITTQYVSI----PNEYG 79
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASAN--SLGRNGF 146
L+ ++L +++ L +G+L GNRF I R +D + ++ + N +LG G
Sbjct: 80 KLSLNEDNLKLEYIGNIEKPLKIGKLYGNRFEIIARA--IDKNEFLRIADNIRALGF-GA 136
Query: 147 INYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPR-EGERNEISKAREYY-KETDD 204
NY+ QRFGS + +L+G ++ VK++L + E+ ++ + + K
Sbjct: 137 PNYYDDQRFGS-VFNGKFIAKEILKGNYEEVVKILLTSYTKSEKKQLKDLKRFIAKNWGS 195
Query: 205 IDGTLRKLPRHLVAERAILQCLK--KCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAAS 262
D L + + + + +K K ++ +A K + L+ +++ +YQS+LWN
Sbjct: 196 WDECLEYIDKKQIRSKMFRNMVKSLKYENDFKKAFKYVDNRLKELFISAYQSYLWNECLK 255
Query: 263 ARVQ----KHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEY 299
++ K ++V F + ++EL C E ++
Sbjct: 256 EFLKEIIPKENRKYVDYSCGTFLFYESIDEELFCKLKEMDF 296
>gi|384156624|ref|YP_005539439.1| tRNA pseudouridine synthase [Arcobacter butzleri ED-1]
gi|345470178|dbj|BAK71629.1| tRNA pseudouridine synthase [Arcobacter butzleri ED-1]
Length = 332
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 70/132 (53%), Gaps = 2/132 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G FL + K N DT E + I+K L + G+AG KDKR+ +TQ +T+ K+ + ++
Sbjct: 37 GNFLVLKIKKTNCDTWELIDRIAKFLNVYSNEIGYAGLKDKRATTTQYITIPKKYSKEIK 96
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ I I L F + E L +G L GNRF I L V + + I+ + +NG N
Sbjct: 97 NFRSKKIEI-LETFLH-NEKLNIGDLEGNRFKINLYDVEISDINHIQKIIKIISKNGMPN 154
Query: 149 YFGLQRFGSGSV 160
YFG QRFG V
Sbjct: 155 YFGYQRFGKEVV 166
>gi|418728821|ref|ZP_13287391.1| tRNA pseudouridine synthase D [Leptospira interrogans str. UI
12758]
gi|410776402|gb|EKR56380.1| tRNA pseudouridine synthase D [Leptospira interrogans str. UI
12758]
Length = 408
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 114/245 (46%), Gaps = 16/245 (6%)
Query: 26 EQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRAS 85
++ GK++ F L K +T +AL ISK + G+AG KD+ + ++Q ++
Sbjct: 34 QKTGKWMIFRLQKSGWNTLDALLRISKESKVSIFEIGYAGKKDRHASTSQYIS-----CQ 88
Query: 86 KLAALNKRLIG-IRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRN 144
K + K L I+L + K+ L +GNRF + LR ++ + I+ + + +N
Sbjct: 89 KPLRVPKELTKVIQLDKIGFSKKSLSTELNVGNRFQLVLRNLLEKEIESIRNNFEKITKN 148
Query: 145 GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYYKETD 203
GFINY+ QRF L +G+ ++ +K+IL DP GE+ + AR+ K
Sbjct: 149 GFINYYDSQRFSRFHSEFRLPILPFFKGDAETCLKLILTDPFPGEKKQ---ARDRKKILY 205
Query: 204 DIDGTLRKLPRHLVA--ERAILQCL----KKCPGNYLQALKAIPRTLRMMYVHSYQSFLW 257
D+ G + + + E+ I L K Y + P +M V S+QS +W
Sbjct: 206 DLWGNWSQCEKWSKSKLEKNIFSNLKKEKKTTQKTYSDLILRFPEEELLMLVSSFQSLIW 265
Query: 258 NHAAS 262
N S
Sbjct: 266 NEFVS 270
>gi|417760821|ref|ZP_12408837.1| tRNA pseudouridine synthase D [Leptospira interrogans str.
2002000624]
gi|418675606|ref|ZP_13236896.1| tRNA pseudouridine synthase D [Leptospira interrogans str.
2002000623]
gi|409943410|gb|EKN89011.1| tRNA pseudouridine synthase D [Leptospira interrogans str.
2002000624]
gi|410577470|gb|EKQ45341.1| tRNA pseudouridine synthase D [Leptospira interrogans str.
2002000623]
Length = 405
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 114/245 (46%), Gaps = 16/245 (6%)
Query: 26 EQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRAS 85
++ GK++ F L K +T +AL ISK + G+AG KD+ + ++Q ++
Sbjct: 31 QKTGKWMIFRLQKSGWNTLDALLRISKESKVSIFEIGYAGKKDRHASTSQYIS-----CQ 85
Query: 86 KLAALNKRLIG-IRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRN 144
K + K L I+L + K+ L +GNRF + LR ++ + I+ + + +N
Sbjct: 86 KPLRVPKELTKVIQLDKIGFSKKSLSTELNVGNRFQLVLRNLLEKEIESIRNNFEKITKN 145
Query: 145 GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYYKETD 203
GFINY+ QRF L +G+ ++ +K+IL DP GE+ + AR+ K
Sbjct: 146 GFINYYDSQRFSRFHSEFRLPILPFFKGDAETCLKLILTDPFPGEKKQ---ARDRKKILY 202
Query: 204 DIDGTLRKLPRHLVA--ERAILQCL----KKCPGNYLQALKAIPRTLRMMYVHSYQSFLW 257
D+ G + + + E+ I L K Y + P +M V S+QS +W
Sbjct: 203 DLWGNWSQCEKWSKSKLEKNIFSNLKKEKKTTQKTYSDLILRFPEEELLMLVSSFQSLIW 262
Query: 258 NHAAS 262
N S
Sbjct: 263 NEFVS 267
>gi|418723154|ref|ZP_13281996.1| tRNA pseudouridine synthase D [Leptospira interrogans str. UI
12621]
gi|409963280|gb|EKO27006.1| tRNA pseudouridine synthase D [Leptospira interrogans str. UI
12621]
Length = 408
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 114/245 (46%), Gaps = 16/245 (6%)
Query: 26 EQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRAS 85
++ GK++ F L K +T +AL ISK + G+AG KD+ + ++Q ++
Sbjct: 34 QKTGKWMIFRLQKSGWNTLDALLRISKESKVSIFEIGYAGKKDRHASTSQYIS-----CQ 88
Query: 86 KLAALNKRLIG-IRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRN 144
K + K L I+L + K+ L +GNRF + LR ++ + I+ + + +N
Sbjct: 89 KPLRVPKELTKVIQLDKIGFSKKSLSTELNVGNRFQLVLRNLLEKEIESIRNNFEKITKN 148
Query: 145 GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYYKETD 203
GFINY+ QRF L +G+ ++ +K+IL DP GE+ + AR+ K
Sbjct: 149 GFINYYDSQRFSRFHSEFRLPILPFFKGDAETCLKLILTDPFPGEKKQ---ARDRKKILY 205
Query: 204 DIDGTLRKLPRHLVA--ERAILQCL----KKCPGNYLQALKAIPRTLRMMYVHSYQSFLW 257
D+ G + + + E+ I L K Y + P +M V S+QS +W
Sbjct: 206 DLWGNWSQCEKWSKSKLEKNIFSNLKKEKKTTQKTYSDLILRFPEEELLMLVSSFQSLIW 265
Query: 258 NHAAS 262
N S
Sbjct: 266 NEFVS 270
>gi|417765209|ref|ZP_12413174.1| tRNA pseudouridine synthase D [Leptospira interrogans serovar
Bulgarica str. Mallika]
gi|418669607|ref|ZP_13230987.1| tRNA pseudouridine synthase D [Leptospira interrogans serovar
Pyrogenes str. 2006006960]
gi|418698583|ref|ZP_13259559.1| tRNA pseudouridine synthase D [Leptospira interrogans serovar
Bataviae str. L1111]
gi|421120396|ref|ZP_15580708.1| tRNA pseudouridine synthase D [Leptospira interrogans str. Brem
329]
gi|400352511|gb|EJP04692.1| tRNA pseudouridine synthase D [Leptospira interrogans serovar
Bulgarica str. Mallika]
gi|410346886|gb|EKO97829.1| tRNA pseudouridine synthase D [Leptospira interrogans str. Brem
329]
gi|410754682|gb|EKR16331.1| tRNA pseudouridine synthase D [Leptospira interrogans serovar
Pyrogenes str. 2006006960]
gi|410762369|gb|EKR28531.1| tRNA pseudouridine synthase D [Leptospira interrogans serovar
Bataviae str. L1111]
Length = 408
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 114/245 (46%), Gaps = 16/245 (6%)
Query: 26 EQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRAS 85
++ GK++ F L K +T +AL ISK + G+AG KD+ + ++Q ++
Sbjct: 34 QKTGKWMIFRLQKSGWNTLDALLRISKESKVSIFEIGYAGKKDRHASTSQYIS-----CQ 88
Query: 86 KLAALNKRLIG-IRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRN 144
K + K L I+L + K+ L +GNRF + LR ++ + I+ + + +N
Sbjct: 89 KPLRVPKELTKVIQLDKIGFSKKSLSTELNVGNRFQLVLRNLLEKEIESIRNNFEKITKN 148
Query: 145 GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYYKETD 203
GFINY+ QRF L +G+ ++ +K+IL DP GE+ + AR+ K
Sbjct: 149 GFINYYDSQRFSRFHSEFRLPILPFFKGDAETCLKLILTDPFPGEKKQ---ARDRKKILY 205
Query: 204 DIDGTLRKLPRHLVA--ERAILQCL----KKCPGNYLQALKAIPRTLRMMYVHSYQSFLW 257
D+ G + + + E+ I L K Y + P +M V S+QS +W
Sbjct: 206 DLWGNWSQCEKWSKSKLEKNIFSNLKKEKKTTQKTYSDLILRFPEEELLMLVSSFQSLIW 265
Query: 258 NHAAS 262
N S
Sbjct: 266 NEFVS 270
>gi|417773281|ref|ZP_12421164.1| tRNA pseudouridine synthase D [Leptospira interrogans str.
2002000621]
gi|410576948|gb|EKQ39947.1| tRNA pseudouridine synthase D [Leptospira interrogans str.
2002000621]
Length = 408
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 114/245 (46%), Gaps = 16/245 (6%)
Query: 26 EQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRAS 85
++ GK++ F L K +T +AL ISK + G+AG KD+ + ++Q ++
Sbjct: 34 QKTGKWMIFRLQKSGWNTLDALLRISKESKVSIFEIGYAGKKDRHASTSQYIS-----CQ 88
Query: 86 KLAALNKRLIG-IRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRN 144
K + K L I+L + K+ L +GNRF + LR ++ + I+ + + +N
Sbjct: 89 KPLRVPKELTKVIQLDKIGFSKKSLSTELNVGNRFQLVLRNLLEKEIESIRNNFEKITKN 148
Query: 145 GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYYKETD 203
GFINY+ QRF L +G+ ++ +K+IL DP GE+ + AR+ K
Sbjct: 149 GFINYYDSQRFSRFHSEFRLPILPFFKGDAETCLKLILTDPFPGEKKQ---ARDRKKILY 205
Query: 204 DIDGTLRKLPRHLVA--ERAILQCL----KKCPGNYLQALKAIPRTLRMMYVHSYQSFLW 257
D+ G + + + E+ I L K Y + P +M V S+QS +W
Sbjct: 206 DLWGNWSQCEKWSKSKLEKNIFSNLKKEKKTTQKTYSDLILRFPEEELLMLVSSFQSLIW 265
Query: 258 NHAAS 262
N S
Sbjct: 266 NEFVS 270
>gi|357628943|gb|EHJ78032.1| tRNA pseudouridine synthase D [Danaus plexippus]
Length = 325
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 64/107 (59%), Gaps = 5/107 (4%)
Query: 16 FDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQ 75
FD+R W G+++ F +YKEN DT EA ++++ L I P G+AGTKD+R+ ++Q
Sbjct: 201 FDNRVKWVWG---GEYVHFVVYKENCDTMEAASVLAQRLHISPSMLGYAGTKDRRAKTSQ 257
Query: 76 RVTV--FKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFT 120
++ F+ R AA R+ +R+G+FC+ L LG L GN++
Sbjct: 258 WFSIRRFEPRRIASAAQQNRMPRVRVGNFCFKDYHLKLGMLKGNKYV 304
>gi|421114977|ref|ZP_15575391.1| tRNA pseudouridine synthase D [Leptospira interrogans serovar
Canicola str. Fiocruz LV133]
gi|410013698|gb|EKO71775.1| tRNA pseudouridine synthase D [Leptospira interrogans serovar
Canicola str. Fiocruz LV133]
Length = 405
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 114/245 (46%), Gaps = 16/245 (6%)
Query: 26 EQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRAS 85
++ GK++ F L K +T +AL ISK + G+AG KD+ + ++Q ++
Sbjct: 31 QKTGKWMIFRLQKSGWNTLDALLRISKESKVSIFEIGYAGKKDRHASTSQYIS-----CQ 85
Query: 86 KLAALNKRLIG-IRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRN 144
K + K L I+L + K+ L +GNRF + LR ++ + I+ + + +N
Sbjct: 86 KPLRVPKELTKVIQLDKIGFSKKSLSTELNVGNRFQLVLRNLLEKEIESIRNNFEKITKN 145
Query: 145 GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYYKETD 203
GFINY+ QRF L +G+ ++ +K+IL DP GE+ + AR+ K
Sbjct: 146 GFINYYDSQRFSRFHSEFRLPILPFFKGDAETCLKLILTDPFPGEKKQ---ARDRKKILY 202
Query: 204 DIDGTLRKLPRHLVA--ERAILQCL----KKCPGNYLQALKAIPRTLRMMYVHSYQSFLW 257
D+ G + + + E+ I L K Y + P +M V S+QS +W
Sbjct: 203 DLWGNWSQCEKWSNSKLEKNIFSNLKKEKKTTQKTYSDLILRFPEEELLMLVSSFQSLIW 262
Query: 258 NHAAS 262
N S
Sbjct: 263 NEFVS 267
>gi|448435277|ref|ZP_21586754.1| tRNA pseudouridine synthase D [Halorubrum tebenquichense DSM 14210]
gi|445684101|gb|ELZ36487.1| tRNA pseudouridine synthase D [Halorubrum tebenquichense DSM 14210]
Length = 517
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 83/323 (25%), Positives = 128/323 (39%), Gaps = 84/323 (26%)
Query: 42 DTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGD 101
DT + +S LG+ +AGTKDKR+V+TQ TV A L + G +
Sbjct: 73 DTNDFARRLSDALGVSRERVSWAGTKDKRAVTTQLFTVRGVDADDLPEIR----GAEIEA 128
Query: 102 FCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSL--------GRN--------- 144
L G L GN F I + V D+ + A+ L G +
Sbjct: 129 LGRAGRALSFGDLAGNDFEIRVADAVEDAPGRVAAAVRDLRAFAGGTEGSDAGDAENAAE 188
Query: 145 -------------GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERN 190
G NYFG QRFGS TH+VG + R + + AV++ +P E +
Sbjct: 189 ASDDPAFPIRSTVGVPNYFGQQRFGSRRPVTHVVGLAIARNDPREAVRLYAGNPAATEPD 248
Query: 191 EISKAR-----------EYYKETDDIDGT---------------------------LRKL 212
+ AR E + D+ GT L ++
Sbjct: 249 DTRAARDRVDAAFGVSGEGESDGDEPGGTADDSDAANDGSGSGSADGAGDGDWAACLDEI 308
Query: 213 PRHLVAERAILQCLKK---CP------GNYLQALKAIPRTLRMMYVHSYQSFLWNHAASA 263
P L ER+++ L P ++ AL+A+P L+ ++V++ QS+L+N S
Sbjct: 309 PGKLRFERSMVHRLADRGVAPDAPPDHDDWWHALEAVPSNLQRLFVNAAQSYLFNRVVSE 368
Query: 264 RVQKH-GTEHVVVGDLV-FCKGD 284
R+++ + V GD+V F GD
Sbjct: 369 RLRRGLPFDRPVAGDVVCFADGD 391
>gi|448503506|ref|ZP_21613136.1| tRNA pseudouridine synthase D [Halorubrum coriense DSM 10284]
gi|445692265|gb|ELZ44445.1| tRNA pseudouridine synthase D [Halorubrum coriense DSM 10284]
Length = 496
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 78/302 (25%), Positives = 123/302 (40%), Gaps = 63/302 (20%)
Query: 42 DTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGD 101
DT + +S LGI +AGTKDKR+V+TQ TV A L + G +
Sbjct: 73 DTNDFARRLSDALGISRERVSWAGTKDKRAVTTQLFTVRGVDADALPEIR----GAEVEA 128
Query: 102 FCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIK-----------ASANSLGRNGFI--- 147
L G L GN F I + V ++ + + +A+S G +
Sbjct: 129 LGRAGRSLSFGDLAGNAFEIRVADAVDEAPERVAETVRDLRAFTGGAADSAAGEGDVPID 188
Query: 148 ------NYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYYK 200
NYFG QRFGS TH+VG + R + + AV++ + E E ++ AR+
Sbjct: 189 ATVGVPNYFGQQRFGSRRPVTHVVGLAVAREDPREAVRLYAGNSAETEPDDTRAARDRVD 248
Query: 201 ET----------------------------------DDIDGTLR--KLPRHLVAERAILQ 224
D I G LR + H +A+R +
Sbjct: 249 AAFGVAEDSGAGGDGSGVGDGPAADGTGDGDWAACLDAIPGKLRFERSMVHRLADRGVDP 308
Query: 225 CLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKH-GTEHVVVGDLV-FCK 282
++ AL+A+P L+ ++V++ QS+L+N S R+++ + V GD+ F
Sbjct: 309 AAPPDDEDWWHALEAVPSNLQRLFVNAAQSYLFNRIVSERLRRGLPFDRPVAGDVACFAD 368
Query: 283 GD 284
GD
Sbjct: 369 GD 370
>gi|419544630|ref|ZP_14083583.1| tRNA pseudouridine synthase D [Campylobacter coli 2553]
gi|419564978|ref|ZP_14102340.1| tRNA pseudouridine synthase D [Campylobacter coli 1098]
gi|419568519|ref|ZP_14105656.1| tRNA pseudouridine synthase D [Campylobacter coli 1417]
gi|419571467|ref|ZP_14108419.1| tRNA pseudouridine synthase D [Campylobacter coli 132-6]
gi|419575136|ref|ZP_14111832.1| tRNA pseudouridine synthase D [Campylobacter coli 1909]
gi|419578731|ref|ZP_14115157.1| tRNA pseudouridine synthase D [Campylobacter coli 1948]
gi|419581586|ref|ZP_14117881.1| tRNA pseudouridine synthase D [Campylobacter coli 1957]
gi|419583099|ref|ZP_14119289.1| tRNA pseudouridine synthase D [Campylobacter coli 1961]
gi|380525038|gb|EIA50603.1| tRNA pseudouridine synthase D [Campylobacter coli 2553]
gi|380540961|gb|EIA65251.1| tRNA pseudouridine synthase D [Campylobacter coli 1098]
gi|380545428|gb|EIA69405.1| tRNA pseudouridine synthase D [Campylobacter coli 1417]
gi|380553481|gb|EIA76993.1| tRNA pseudouridine synthase D [Campylobacter coli 132-6]
gi|380554194|gb|EIA77676.1| tRNA pseudouridine synthase D [Campylobacter coli 1909]
gi|380558851|gb|EIA82019.1| tRNA pseudouridine synthase D [Campylobacter coli 1948]
gi|380559069|gb|EIA82234.1| tRNA pseudouridine synthase D [Campylobacter coli 1957]
gi|380564144|gb|EIA86963.1| tRNA pseudouridine synthase D [Campylobacter coli 1961]
Length = 372
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 84/152 (55%), Gaps = 3/152 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L H+ K++ T EAL ++S++ G+ R FG+AG KDK+ + Q +++ K+ S LA
Sbjct: 46 GEHLILHINKKDLSTNEALRILSELSGVKMRDFGYAGLKDKQGSTFQYLSMPKKFESFLA 105
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ + I L F + + L +G L GN F I L+ V+ ++ + +L + GF N
Sbjct: 106 NFSHPKLKI-LETFIH-ENKLRIGHLKGNSFFIRLKKVMPSDALKLEQALMNLDKQGFAN 163
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM 180
YFG QRFG + G +LRG+ VKM
Sbjct: 164 YFGYQRFGKFG-DNYKEGLEILRGKKMKNVKM 194
>gi|305432249|ref|ZP_07401412.1| tRNA pseudouridine synthase D [Campylobacter coli JV20]
gi|419550567|ref|ZP_14089066.1| tRNA pseudouridine synthase D [Campylobacter coli 2688]
gi|304444597|gb|EFM37247.1| tRNA pseudouridine synthase D [Campylobacter coli JV20]
gi|380530227|gb|EIA55317.1| tRNA pseudouridine synthase D [Campylobacter coli 2688]
Length = 372
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 84/152 (55%), Gaps = 3/152 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L H+ K++ T EAL ++S++ G+ R FG+AG KDK+ + Q +++ K+ S LA
Sbjct: 46 GEHLILHINKKDLSTNEALRILSELSGVKMRDFGYAGLKDKQGSTFQYLSMPKKFESFLA 105
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ + I L F + + L +G L GN F I L+ V+ ++ + +L + GF N
Sbjct: 106 NFSHPKLKI-LETFIH-ENKLRIGHLKGNSFFIRLKKVMPSDALKLEQALINLDKQGFAN 163
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM 180
YFG QRFG + G +LRG+ VKM
Sbjct: 164 YFGYQRFGKFG-DNYKEGLEILRGKKMKNVKM 194
>gi|419540414|ref|ZP_14079651.1| tRNA pseudouridine synthase D [Campylobacter coli Z163]
gi|419559177|ref|ZP_14096991.1| tRNA pseudouridine synthase D [Campylobacter coli 80352]
gi|419585655|ref|ZP_14121703.1| tRNA pseudouridine synthase D [Campylobacter coli 202/04]
gi|419603573|ref|ZP_14138117.1| tRNA pseudouridine synthase D [Campylobacter coli 151-9]
gi|419615808|ref|ZP_14149466.1| tRNA pseudouridine synthase D [Campylobacter coli Z156]
gi|380517148|gb|EIA43271.1| tRNA pseudouridine synthase D [Campylobacter coli Z163]
gi|380537966|gb|EIA62497.1| tRNA pseudouridine synthase D [Campylobacter coli 80352]
gi|380561742|gb|EIA84655.1| tRNA pseudouridine synthase D [Campylobacter coli 202/04]
gi|380578520|gb|EIB00365.1| tRNA pseudouridine synthase D [Campylobacter coli 151-9]
gi|380596605|gb|EIB17288.1| tRNA pseudouridine synthase D [Campylobacter coli Z156]
Length = 372
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 84/152 (55%), Gaps = 3/152 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L H+ K++ T EAL ++S++ G+ R FG+AG KDK+ + Q +++ K+ S LA
Sbjct: 46 GEHLILHINKKDLSTNEALRILSELSGVKMRDFGYAGLKDKQGSTFQYLSMPKKFESFLA 105
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ + I L F + + L +G L GN F I L+ V+ ++ + +L + GF N
Sbjct: 106 NFSHPKLKI-LETFIH-ENKLRIGHLKGNSFFIRLKKVLPSDALKLEQALINLDKQGFAN 163
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM 180
YFG QRFG + G +LRG+ VKM
Sbjct: 164 YFGYQRFGKFG-DNYKEGLEILRGKKMKNVKM 194
>gi|88811683|ref|ZP_01126937.1| tRNA pseudouridine synthase D [Nitrococcus mobilis Nb-231]
gi|88791074|gb|EAR22187.1| tRNA pseudouridine synthase D [Nitrococcus mobilis Nb-231]
Length = 361
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 72/139 (51%), Gaps = 9/139 (6%)
Query: 25 PEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRA 84
P+ G+ L + K T EA+ ++ +LG+ PR+ G AG KD+ +V+TQ ++V +
Sbjct: 50 PDGQGEHLLVEIRKRGLTTAEAVERLAGLLGVAPRAVGHAGRKDRNAVTTQWLSVHQPGG 109
Query: 85 SKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASAN----S 140
+L G+ + L +G L GNRF I LRG+ DV +A+A+
Sbjct: 110 RQLPVPGAIAPGLEILSAARHSRKLRVGALAGNRFQIRLRGI-----DVPRAAADRRLLR 164
Query: 141 LGRNGFINYFGLQRFGSGS 159
+ +G NYFG QRFG G
Sbjct: 165 IVHHGVPNYFGRQRFGRGG 183
>gi|237835309|ref|XP_002366952.1| hypothetical protein TGME49_044630 [Toxoplasma gondii ME49]
gi|211964616|gb|EEA99811.1| hypothetical protein TGME49_044630 [Toxoplasma gondii ME49]
Length = 1479
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 94/190 (49%), Gaps = 22/190 (11%)
Query: 234 LQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCK-GDDTEKELGC 292
L+A+++IPR R++YV +Y S+LWN A+ R + +G VVGDLV K G++T +
Sbjct: 1206 LKAVRSIPRLQRLIYVKAYASYLWNLCATERARVYGLCRPVVGDLVLEKAGNETMQSTAA 1265
Query: 293 VNPE----FEYESSNDA--------DDSSHLDEVPETDHPDG-RHNLVKTVTAADINSGK 339
F +E + +A DS + + PD R L++T +
Sbjct: 1266 SCSSSSLLFPFERTGEARPDSQRVRSDSQRVRLDSQRVRPDSQRVRLLRT----EEECQS 1321
Query: 340 YTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVF 399
++I DVVLPL G+ +++P N V E +L ++ L E L+ +E + +YR +
Sbjct: 1322 FSIADVVLPLIGAGMVFPENKVGEFLRNLMNEE--FLCERLYRREEELF--LDASYRPLL 1377
Query: 400 QKPMDFEWEL 409
P DF L
Sbjct: 1378 AFPQDFSCTL 1387
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 26/38 (68%)
Query: 145 GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL 182
GFINYFG QRFG+G+ PTH +G LL ++ +IL
Sbjct: 854 GFINYFGPQRFGTGARPTHHIGRALLHRQFARVCNLIL 891
Score = 45.1 bits (105), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 34/48 (70%)
Query: 32 LRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTV 79
+RF L K N++T EAL +++++ G+ + F FAG KD+R+V++Q +
Sbjct: 512 VRFILTKHNRETPEALEVLARVTGVDIKRFSFAGMKDRRAVTSQWIAC 559
>gi|419553304|ref|ZP_14091555.1| tRNA pseudouridine synthase D [Campylobacter coli 2692]
gi|380529078|gb|EIA54273.1| tRNA pseudouridine synthase D [Campylobacter coli 2692]
Length = 372
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 84/152 (55%), Gaps = 3/152 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L H+ K++ T EAL ++S++ G+ R FG+AG KDK+ + Q +++ K+ S LA
Sbjct: 46 GEHLILHINKKDLSTNEALRILSELSGVKMRDFGYAGLKDKQGSTFQYLSMPKKFESFLA 105
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ + I L F + + L +G L GN F I L+ V+ ++ + +L + GF N
Sbjct: 106 NFSHPKLKI-LETFIH-ENKLRIGHLKGNSFFIRLKKVLPSDALKLEQALINLDKQGFAN 163
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM 180
YFG QRFG + G +LRG+ VKM
Sbjct: 164 YFGYQRFGKFG-DNYKEGLEILRGKKMKNVKM 194
>gi|419538787|ref|ZP_14078135.1| tRNA pseudouridine synthase D [Campylobacter coli 90-3]
gi|380516476|gb|EIA42607.1| tRNA pseudouridine synthase D [Campylobacter coli 90-3]
Length = 372
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 84/152 (55%), Gaps = 3/152 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L H+ K++ T EAL ++S++ G+ R FG+AG KDK+ + Q +++ K+ S LA
Sbjct: 46 GEHLILHINKKDLSTNEALRILSELSGVKMRDFGYAGLKDKQGSTFQYLSMPKKFESFLA 105
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ + I L F + + L +G L GN F I L+ V+ ++ + +L + GF N
Sbjct: 106 NFSHPKLKI-LETFIH-ENKLRIGHLKGNSFFIRLKKVLPSDALKLEQALINLDKQGFAN 163
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM 180
YFG QRFG + G +LRG+ VKM
Sbjct: 164 YFGYQRFGKFG-DNYKEGLEILRGKKMKNVKM 194
>gi|419560190|ref|ZP_14097840.1| tRNA pseudouridine synthase D [Campylobacter coli 86119]
gi|419604824|ref|ZP_14139282.1| tRNA pseudouridine synthase D [Campylobacter coli LMG 9853]
gi|380537540|gb|EIA62089.1| tRNA pseudouridine synthase D [Campylobacter coli 86119]
gi|380579449|gb|EIB01246.1| tRNA pseudouridine synthase D [Campylobacter coli LMG 9853]
Length = 372
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 84/152 (55%), Gaps = 3/152 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L H+ K++ T EAL ++S++ G+ R FG+AG KDK+ + Q +++ K+ S LA
Sbjct: 46 GEHLILHINKKDLSTNEALRILSELSGVKMRDFGYAGLKDKQGSTFQYLSMPKKFESFLA 105
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ + I L F + + L +G L GN F I L+ V+ ++ + +L + GF N
Sbjct: 106 NFSHPKLKI-LETFIH-ENKLRIGHLKGNSFFIRLKKVLPSDALKLEQALINLDKQGFAN 163
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM 180
YFG QRFG + G +LRG+ VKM
Sbjct: 164 YFGYQRFGKFG-DNYKEGLEILRGKKMKNVKM 194
>gi|419595322|ref|ZP_14130428.1| tRNA pseudouridine synthase D [Campylobacter coli LMG 23336]
gi|419600070|ref|ZP_14134839.1| tRNA pseudouridine synthase D [Campylobacter coli LMG 23344]
gi|419612959|ref|ZP_14146820.1| tRNA pseudouridine synthase D [Campylobacter coli H9]
gi|380573868|gb|EIA95994.1| tRNA pseudouridine synthase D [Campylobacter coli LMG 23336]
gi|380583474|gb|EIB05020.1| tRNA pseudouridine synthase D [Campylobacter coli LMG 23344]
gi|380588924|gb|EIB10014.1| tRNA pseudouridine synthase D [Campylobacter coli H9]
Length = 372
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 84/152 (55%), Gaps = 3/152 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L H+ K++ T EAL ++S++ G+ R FG+AG KDK+ + Q +++ K+ S LA
Sbjct: 46 GEHLILHINKKDLSTNEALRILSELSGVKMRDFGYAGLKDKQGSTFQYLSMPKKFESFLA 105
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ + I L F + + L +G L GN F I L+ V+ ++ + +L + GF N
Sbjct: 106 NFSHPKLKI-LETFIH-ENKLRIGHLKGNSFFIRLKKVLPSDALKLEQALINLDKQGFAN 163
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM 180
YFG QRFG + G +LRG+ VKM
Sbjct: 164 YFGYQRFGKFG-DNYKEGLEILRGKKMKNVKM 194
>gi|340059124|emb|CCC53499.1| putative tRNA pseudouridine synthase, fragment [Trypanosoma vivax
Y486]
Length = 936
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 79/282 (28%), Positives = 116/282 (41%), Gaps = 36/282 (12%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFK-QRASKLAA 89
FL+ HL+K++ AL I++ L + P AG KD + QRV + AS LAA
Sbjct: 339 FLQCHLHKQHVAHSIALANIAQTLRMHPSQISVAGIKDYIGDTLQRVRLQNITPASALAA 398
Query: 90 ---LNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGF 146
K+ + L DF Y E L+ G+L GN F I LR V E + +A G +GF
Sbjct: 399 NRIFRKKKWSMSLSDFSYHTEPLVPGRLYGNHFKIVLRDVTAPREHIERA-IYEFGLHGF 457
Query: 147 INYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGE---RNEISKAREYYKETD 203
NY+G QRF S +L W L E R+ + +A++Y
Sbjct: 458 PNYYGCQRF-SWFGGREDAAFAILNQNWLVFAFRFLGYTVRELTLRDLLQRAKKYPNPLQ 516
Query: 204 D--IDGTLRKLPRHLVAERAIL--QCLKKCP--GNYLQALKAIP---------------- 241
D +R+L R + E + L CP G L ++ P
Sbjct: 517 DEYRRNVVRRL-RSIAVEPSELDEPPFLSCPPLGTPLASVDGGPISRKQELILLQLKGAF 575
Query: 242 ----RTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLV 279
R M S+LWN + R+ G + V++GD++
Sbjct: 576 MDLTMVSRRMTAQRLCSYLWNQVLTLRLHHFGGQQVLLGDMI 617
>gi|419608665|ref|ZP_14142851.1| tRNA pseudouridine synthase D [Campylobacter coli H6]
gi|380585117|gb|EIB06487.1| tRNA pseudouridine synthase D [Campylobacter coli H6]
Length = 372
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 84/152 (55%), Gaps = 3/152 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L H+ K++ T EAL ++S++ G+ R FG+AG KDK+ + Q +++ K+ S LA
Sbjct: 46 GEHLILHINKKDLSTNEALRILSELSGVKMRDFGYAGLKDKQGSTFQYLSMPKKFESFLA 105
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ + I L F + + L +G L GN F I L+ V+ ++ + +L + GF N
Sbjct: 106 NFSHPKLKI-LETFIH-ENKLRIGHLKGNSFFIRLKKVLPSDALKLEQALINLDKQGFAN 163
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM 180
YFG QRFG + G +LRG+ VKM
Sbjct: 164 YFGYQRFGKFG-DNYKEGLEILRGKKMKNVKM 194
>gi|429962856|gb|ELA42400.1| hypothetical protein VICG_00499 [Vittaforma corneae ATCC 50505]
Length = 435
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 115/272 (42%), Gaps = 75/272 (27%)
Query: 34 FHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTV---FKQRASKLAAL 90
F L K + A L+SK L I GTKDKR+++ Q V+V F+ + +L
Sbjct: 105 FTLLKYDYSDHSAQNLLSKRLNIPLACIQTGGTKDKRAITLQEVSVKCSFEALFNYALSL 164
Query: 91 NKRLIGIRLGDFCYVKE---------------------------GLL---------LGQL 114
+K I+ D Y E G+ LG L
Sbjct: 165 SKNS-KIKFKDLGYCAELENLNATAAHAFNNYMRIETLSFQEEIGIYNIRRGSSKKLGDL 223
Query: 115 LGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEW 174
GN FTI +R DS K F NYFG QRFG+ H++G +L G++
Sbjct: 224 SGNYFTIKVRNFFTDSPVSTK----------FYNYFGPQRFGNNR-NNHIIGEKILNGQY 272
Query: 175 KSAVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYL 234
+ A+++IL G ET+ GT++K ++++ K P +
Sbjct: 273 EEAIELILKDDAGS------------ETN--PGTIKKFIQNMIENY-------KKPKYIV 311
Query: 235 QALKAIPRTLRMMYVHSYQSFLWNHAASARVQ 266
+ L R M+Y+H+YQS+++N + ++RV+
Sbjct: 312 EHL---SRRSLMIYLHAYQSYIFNMSINSRVE 340
>gi|396081596|gb|AFN83212.1| pseudouridine synthase-like protein [Encephalitozoon romaleae
SJ-2008]
Length = 487
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 95/174 (54%), Gaps = 23/174 (13%)
Query: 111 LGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLL 170
LG L GNRF+I L+G + ++K +L R GF+NYFG QRFG+ + H +G +L
Sbjct: 257 LGDLKGNRFSIALKGF--RDQGLVK----NLER-GFLNYFGQQRFGN-KLRNHEIGYDIL 308
Query: 171 RGEWKSAVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCP 230
++ A+ I+ + G+ +E+ + +Y + D E+ IL+C K
Sbjct: 309 TRRYEEAIDKIM--KGGKCHELYISGKYEEAMGLGDSV----------EKYILKCKSKGM 356
Query: 231 GNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGD 284
+ + R LRM+Y+HSYQS +N A ++R++ GT+ VV GD+V+ GD
Sbjct: 357 KEK-DMVYGLRRELRMLYLHSYQSLKFNEAINSRME-LGTD-VVEGDMVYVNGD 407
>gi|422003094|ref|ZP_16350327.1| tRNA pseudouridine synthase D [Leptospira santarosai serovar
Shermani str. LT 821]
gi|417258315|gb|EKT87707.1| tRNA pseudouridine synthase D [Leptospira santarosai serovar
Shermani str. LT 821]
Length = 428
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 78/296 (26%), Positives = 126/296 (42%), Gaps = 36/296 (12%)
Query: 14 NPFDSRGSE----NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDK 69
NP D R E ++ ++ GK+ F L+K +T +AL ISK + G+AG KD+
Sbjct: 38 NPGDFRVEEILRPDFIQKSGKWTIFRLHKSGWNTLDALLKISKESKVSISEIGYAGKKDR 97
Query: 70 RSVSTQRVTVFKQRASKLAALNKRLIGI-RLGDFCYVKEGLLLGQLLGNRFTITLRGVVV 128
+ ++Q ++ K + K L + +L + L GNRF + LR ++
Sbjct: 98 HATTSQYLS-----CQKPLKIPKELGNVLQLEKIGFSNRPLSPEANAGNRFVLILRNLLE 152
Query: 129 DSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREG 187
+ ++ + +G NGFINY+ QRF L + L+G+ ++ +K+IL DP G
Sbjct: 153 REIESVRNNFEKIGNNGFINYYDSQRFSRFHPEFKLPILSYLKGDAETCLKLILTDPYAG 212
Query: 188 ERNEISKAREYYKETDDIDGTLRKLPRH------------LVAERAILQCLKKCPGNYLQ 235
E+ + AR+ K + G + + L ER + Q Y
Sbjct: 213 EKKQ---ARDRKKNIQAVWGNWSQCKKWSDSKLENRIFFDLSRERNLTQ------KTYSD 263
Query: 236 ALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVV----GDLVFCKGDDTE 287
+ P +M V S QS +WN S + G V + G L F TE
Sbjct: 264 LIFQFPEEELLMLVSSMQSLIWNEFVSELLISEGYSGVRIKTKTGFLFFPGESSTE 319
>gi|419562075|ref|ZP_14099600.1| tRNA pseudouridine synthase D [Campylobacter coli 1091]
gi|419566102|ref|ZP_14103369.1| tRNA pseudouridine synthase D [Campylobacter coli 1148]
gi|419573138|ref|ZP_14109948.1| tRNA pseudouridine synthase D [Campylobacter coli 1891]
gi|419592030|ref|ZP_14127356.1| tRNA pseudouridine synthase D [Campylobacter coli 37/05]
gi|419593510|ref|ZP_14128726.1| tRNA pseudouridine synthase D [Campylobacter coli LMG 9854]
gi|380542056|gb|EIA66300.1| tRNA pseudouridine synthase D [Campylobacter coli 1091]
gi|380547711|gb|EIA71629.1| tRNA pseudouridine synthase D [Campylobacter coli 1148]
gi|380552189|gb|EIA75754.1| tRNA pseudouridine synthase D [Campylobacter coli 1891]
gi|380566993|gb|EIA89546.1| tRNA pseudouridine synthase D [Campylobacter coli 37/05]
gi|380570252|gb|EIA92681.1| tRNA pseudouridine synthase D [Campylobacter coli LMG 9854]
Length = 372
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 84/152 (55%), Gaps = 3/152 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L H+ K++ T EAL ++S++ G+ R FG+AG KDK+ + Q +++ K+ S LA
Sbjct: 46 GEHLILHINKKDLSTNEALRILSELSGVKMRDFGYAGLKDKQGSTFQYLSMPKKFESFLA 105
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ + I L F + + L +G L GN F I L+ V+ ++ + +L + GF N
Sbjct: 106 NFSHPKLKI-LETFIH-ENKLRIGHLKGNSFFIRLKKVLPSDALKLEQALINLDKQGFAN 163
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM 180
YFG QRFG + G +LRG+ VKM
Sbjct: 164 YFGYQRFGKFG-DNYKEGLEILRGKKMKNVKM 194
>gi|159905320|ref|YP_001548982.1| tRNA pseudouridine synthase D [Methanococcus maripaludis C6]
gi|159886813|gb|ABX01750.1| tRNA pseudouridine synthase D TruD [Methanococcus maripaludis C6]
Length = 389
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 112/236 (47%), Gaps = 12/236 (5%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G + + L K + +A+ +SK + + G+ G KD+ +++TQ V++ ++
Sbjct: 24 GNYSLYKLQKNGIENLKAISYLSKNFEVPTKEIGYCGLKDRHAITTQYVSI----PNEYG 79
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRN-GFI 147
L+ ++L +++ L +G+L GNRF I R +D + +K + N + G
Sbjct: 80 KLSLNEDNLKLEYIGNIEKPLKIGKLYGNRFEIIARA--IDKNEFLKIADNMRALSFGAP 137
Query: 148 NYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISK--AREYYKETDDI 205
NY+ QRFGS + +L+G ++ VK++L N+ K R K +
Sbjct: 138 NYYDDQRFGS-VFNGKFIAKEILKGNYEEVVKILLTSYTKSENKQLKDLKRFIAKNWGNW 196
Query: 206 DGTLRKLPRHLVAERAILQCLK--KCPGNYLQALKAIPRTLRMMYVHSYQSFLWNH 259
D L + + + + +K K ++ ++ K + L+ +++ +YQS+LWN
Sbjct: 197 DECLNYIDKKQIKSKMFRNMVKSLKYENDFKKSFKYVDNRLKELFISAYQSYLWNE 252
>gi|221503873|gb|EEE29557.1| tRNA pseudouridine synthase D, putative [Toxoplasma gondii VEG]
Length = 1436
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 89/181 (49%), Gaps = 18/181 (9%)
Query: 234 LQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCK-GDDTEKELGC 292
L+A+++IPR R++YV +Y S+LWN A+ R + +G VVGDLV K G++T +
Sbjct: 1177 LKAVRSIPRLQRLIYVKAYASYLWNLCATERARVYGLCRPVVGDLVLEKAGNETMQSTAA 1236
Query: 293 VNPE----FEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLP 348
F +E + +A S R L++T + ++I DVVLP
Sbjct: 1237 SCSSSSLLFPFERTGEARPDSQ-----RVRSDSQRVRLLRT----EEECQSFSIADVVLP 1287
Query: 349 LPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWE 408
L G+ +++P N V E +L ++ L E L+ +E + +YR + P DF
Sbjct: 1288 LIGAGMVFPENKVGEFLRNLMNEE--FLCERLYRREEELF--LDASYRPLLAFPQDFSCT 1343
Query: 409 L 409
L
Sbjct: 1344 L 1344
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 26/38 (68%)
Query: 145 GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL 182
GFINYFG QRFG+G+ PTH +G LL ++ +IL
Sbjct: 825 GFINYFGPQRFGTGARPTHHIGRALLHRQFARVCNLIL 862
Score = 45.1 bits (105), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 34/47 (72%)
Query: 32 LRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVT 78
+RF L K N++T EAL +++++ G+ + F FAG KD+R+V++Q +
Sbjct: 487 VRFILTKHNRETPEALEVLARVTGVDIKRFSFAGMKDRRAVTSQWIA 533
>gi|418753402|ref|ZP_13309648.1| tRNA pseudouridine synthase D [Leptospira santarosai str. MOR084]
gi|421112562|ref|ZP_15573019.1| tRNA pseudouridine synthase D [Leptospira santarosai str. JET]
gi|409966156|gb|EKO34007.1| tRNA pseudouridine synthase D [Leptospira santarosai str. MOR084]
gi|410802207|gb|EKS08368.1| tRNA pseudouridine synthase D [Leptospira santarosai str. JET]
Length = 428
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 76/290 (26%), Positives = 125/290 (43%), Gaps = 24/290 (8%)
Query: 14 NPFDSRGSE----NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDK 69
NP D R E ++ ++ GK+ F L+K +T +AL ISK + G+AG KD+
Sbjct: 38 NPGDFRVEEILRPDFIQKSGKWTIFRLHKSGWNTLDALLKISKESKVSISEIGYAGKKDR 97
Query: 70 RSVSTQRVTVFKQRASKLAALNKRLIGI-RLGDFCYVKEGLLLGQLLGNRFTITLRGVVV 128
+ ++Q ++ K + K L + +L + L GNRF + LR ++
Sbjct: 98 HATTSQYLS-----CQKPLKIPKELGNVLQLEKIGFSNRPLSPEANAGNRFVLILRNLLE 152
Query: 129 DSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREG 187
+ ++ + +G NGFINY+ QRF L + L+G+ ++ +K+IL DP G
Sbjct: 153 REIESVRNNFEKIGNNGFINYYDSQRFSRFHPEFKLPILSYLKGDAETCLKLILTDPYAG 212
Query: 188 ERNEISKAREYYKETDDIDGTL---RKLPRHLVAERAILQCLKK---CPGNYLQALKAIP 241
E+ + AR+ K + G +K + R ++ Y + P
Sbjct: 213 EKKQ---ARDRKKNIQAVWGNWSQCKKWSDSKLENRIFFDLSRERNPTQKTYSDLIFQFP 269
Query: 242 RTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVV----GDLVFCKGDDTE 287
+M V S QS +WN S + G V + G L F TE
Sbjct: 270 EEELLMLVSSMQSLIWNEFVSELLISEGYSGVRIKTKTGFLFFPGESSTE 319
>gi|418744611|ref|ZP_13300965.1| tRNA pseudouridine synthase D [Leptospira santarosai str. CBC379]
gi|410794557|gb|EKR92458.1| tRNA pseudouridine synthase D [Leptospira santarosai str. CBC379]
Length = 428
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 77/295 (26%), Positives = 129/295 (43%), Gaps = 34/295 (11%)
Query: 14 NPFDSRGSE----NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDK 69
NP D R E ++ ++ GK+ F L+K +T +AL ISK + G+AG KD+
Sbjct: 38 NPGDFRVEEILRPDFIQKSGKWTIFRLHKSGWNTLDALLKISKESKVSISEIGYAGKKDR 97
Query: 70 RSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLL------GNRFTITL 123
+ ++Q ++ Q+ K+ LG+ +++ L + L GNRF + L
Sbjct: 98 HATTSQYLSC--QKPLKIPK--------ELGNVLQLEKIGLSNRPLSPEANAGNRFVLIL 147
Query: 124 RGVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL- 182
R ++ + ++ + +G NGFINY+ QRF L + L+G+ ++ +K+IL
Sbjct: 148 RNLLEREIESVRNNFEKIGNNGFINYYDSQRFSRFHPEFKLPILSYLKGDAETCLKLILT 207
Query: 183 DPREGERNEISKAREYYKETDDIDGTL---RKLPRHLVAERAILQCLKK---CPGNYLQA 236
DP GE+ + AR+ K + G +K + R ++ Y
Sbjct: 208 DPYAGEKKQ---ARDRKKNIQAVWGNWSQCKKWSDSKLENRIFFDLSRERNPTQKTYSDL 264
Query: 237 LKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVV----GDLVFCKGDDTE 287
+ P +M V S QS +WN S + G V + G L F TE
Sbjct: 265 IFQFPEEELLMLVSSMQSLIWNEFVSELLISEGYSGVRIKTKTGFLFFPGESSTE 319
>gi|421097127|ref|ZP_15557823.1| tRNA pseudouridine synthase D [Leptospira borgpetersenii str.
200901122]
gi|410799867|gb|EKS01931.1| tRNA pseudouridine synthase D [Leptospira borgpetersenii str.
200901122]
Length = 425
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 128/290 (44%), Gaps = 24/290 (8%)
Query: 14 NPFDSRGSE----NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDK 69
NP D R E + ++ GK++ F L+K +T +AL ISK I G+AG KD+
Sbjct: 35 NPGDFRVEEILRPGFIQKSGKWMIFRLHKSGWNTLDALLKISKESKISISEIGYAGKKDR 94
Query: 70 RSVSTQRVTVFKQRASKLAALNKRLIGI-RLGDFCYVKEGLLLGQLLGNRFTITLRGVVV 128
+ ++Q ++ K + K L + +L + ++ L GNRF + LR +
Sbjct: 95 HATTSQYLS-----CQKPLKVPKELANVLQLEKIGFSEKSLSPEANAGNRFVLILRNLPE 149
Query: 129 DSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREG 187
+ ++ + +G NGFINY+ QRF L L+G+ ++ +K+IL DP G
Sbjct: 150 KEIESVRNNFEKIGNNGFINYYDSQRFSRFHPEFRLPIFPYLKGDAEACLKLILTDPYAG 209
Query: 188 ERNEISKAREYYKETDDIDGTLRKLPR--HLVAERAILQCL--KKCPGN--YLQALKAIP 241
E+ + AR+ K+ G + + + E I L +K P Y + P
Sbjct: 210 EKKQ---ARDRKKKIQAAWGNWSQCKKWSNNKLENKIFFSLNREKSPTQKMYSALILQFP 266
Query: 242 RTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVV----GDLVFCKGDDTE 287
+M + S QS +WN S + G V + G L F + E
Sbjct: 267 EEELLMLISSMQSLIWNEFVSELLISEGCFGVRIKTKTGFLFFPEKSSIE 316
>gi|419554497|ref|ZP_14092637.1| tRNA pseudouridine synthase D [Campylobacter coli 2698]
gi|380532697|gb|EIA57667.1| tRNA pseudouridine synthase D [Campylobacter coli 2698]
Length = 372
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 84/152 (55%), Gaps = 3/152 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L H+ K++ T EAL ++S++ G+ R FG+AG KDK+ + Q +++ K+ S LA
Sbjct: 46 GEHLILHINKKDLSTNEALRILSELSGVKMRDFGYAGLKDKQGSTFQYLSMPKKFESFLA 105
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ + I L F + + L +G L GN F I L+ V+ ++ + +L + GF N
Sbjct: 106 NFSHPKLKI-LETFIH-ENKLRIGHLKGNSFFIRLKKVMPSDALKLEQALINLDKQGFAN 163
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM 180
YFG QRFG + G +LRG+ VKM
Sbjct: 164 YFGYQRFGKFG-DNYKEGLEILRGKKMKNVKM 194
>gi|398331935|ref|ZP_10516640.1| pseudouridine synthase [Leptospira alexanderi serovar Manhao 3 str.
L 60]
Length = 425
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 118/271 (43%), Gaps = 20/271 (7%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
GK+ F L+K +T +AL ISK + G+AG KD+ + ++Q ++ K
Sbjct: 54 GKWTIFRLHKSGWNTLDALLKISKESKVSISEIGYAGKKDRHATTSQYLS-----CQKPL 108
Query: 89 ALNKRLIGI-RLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFI 147
+ K L + +L + ++ L GNRF + LR + + ++ + +G+NGFI
Sbjct: 109 KIPKELANVLQLEKIGFSEKSLSPEANAGNRFVLILRNLPEKEIESVRNNFEKIGKNGFI 168
Query: 148 NYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYYKETDDID 206
NY+ QRF L L+G+ ++ +K+IL DP GE+ + AR+ K
Sbjct: 169 NYYDSQRFSRFHPEFRLPIFPYLKGDAETCLKLILTDPYAGEKKQ---ARDRKKNIQAAW 225
Query: 207 GTLRKLPRHL--VAERAILQCL--KKCPGN--YLQALKAIPRTLRMMYVHSYQSFLWNHA 260
G + + E I L +K P Y + P +M + S QS +WN
Sbjct: 226 GNWSQCKKWSDNKLENKIFFSLNREKNPTQKTYSALILQFPEEELLMLISSMQSLIWNEF 285
Query: 261 ASARVQKHGTEHVVV----GDLVFCKGDDTE 287
S + G V + G L F + E
Sbjct: 286 VSELLISEGCSGVRIKTKTGSLFFPEESSIE 316
>gi|408907990|emb|CCM10908.1| tRNA pseudouridine 13 synthase [Helicobacter heilmannii ASB1.4]
Length = 376
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 72/132 (54%), Gaps = 2/132 (1%)
Query: 27 QLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASK 86
Q G+ L H+ K++K T E L L+S++LG FG+AG KDK +++ Q +++ K
Sbjct: 51 QSGEHLIAHVRKKDKSTWEMLDLLSQVLGCKVSCFGYAGLKDKNALTFQYISMPKTYEKA 110
Query: 87 LAALNKRLI--GIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRN 144
L+ + L G+++ D + LG L GN F++ L+ + S I L +
Sbjct: 111 LSQHAQTLYEQGVKILDTTTHTHKIRLGHLKGNYFSLRLKKLTPLSAQKIAEVLEILQKK 170
Query: 145 GFINYFGLQRFG 156
GF+NYFG QRFG
Sbjct: 171 GFLNYFGAQRFG 182
>gi|456875404|gb|EMF90605.1| tRNA pseudouridine synthase D [Leptospira santarosai str. ST188]
Length = 428
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 76/290 (26%), Positives = 125/290 (43%), Gaps = 24/290 (8%)
Query: 14 NPFDSRGSE----NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDK 69
NP D R E ++ ++ GK+ F L+K +T +AL ISK + G+AG KD+
Sbjct: 38 NPGDFRVEEILRPDFIQKSGKWTIFRLHKSGWNTLDALLKISKESKVSISEIGYAGKKDR 97
Query: 70 RSVSTQRVTVFKQRASKLAALNKRLIGI-RLGDFCYVKEGLLLGQLLGNRFTITLRGVVV 128
+ ++Q ++ K + K L + +L + L GNRF + LR ++
Sbjct: 98 HATTSQYLS-----CQKPLKIPKELGNVLQLEKIGFSNRPLSPEANAGNRFVLILRNLLE 152
Query: 129 DSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREG 187
+ ++ + +G NGFINY+ QRF L + L+G+ ++ +K+IL DP G
Sbjct: 153 REIESVRNNFEKIGNNGFINYYDSQRFSRFHPEFKLPILSYLKGDAETCLKLILTDPYAG 212
Query: 188 ERNEISKAREYYKETDDIDGTL---RKLPRHLVAERAILQCLKK---CPGNYLQALKAIP 241
E+ + AR+ K + G +K + R ++ Y + P
Sbjct: 213 EKKQ---ARDRKKNIQALWGNWSQCKKWSDSKLENRIFFDLSRERNPTQKTYSDLIFQFP 269
Query: 242 RTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVV----GDLVFCKGDDTE 287
+M V S QS +WN S + G V + G L F TE
Sbjct: 270 EEELLMLVSSMQSLIWNEFVSELLISEGYSGVRIKTKTGFLFFPGESSTE 319
>gi|419546856|ref|ZP_14085602.1| tRNA pseudouridine synthase D [Campylobacter coli 2680]
gi|380521805|gb|EIA47520.1| tRNA pseudouridine synthase D [Campylobacter coli 2680]
Length = 372
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 83/152 (54%), Gaps = 3/152 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L H+ K++ T EAL ++S+ G+ R FG+AG KDK+ + Q +++ K+ S LA
Sbjct: 46 GEHLILHINKKDLTTNEALKILSETSGVKMRDFGYAGLKDKQGSTFQYLSMPKKFESFLA 105
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ + I L F + + L +G L GN F I L+ V+ ++ + +L + GF N
Sbjct: 106 NFSHPKLKI-LETFIH-ENKLRIGHLKGNSFFIRLKKVLPSDALKLEQALINLDKQGFAN 163
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM 180
YFG QRFG + G +LRG+ VKM
Sbjct: 164 YFGYQRFGKFG-DNYKEGLEILRGKKMKNVKM 194
>gi|389860883|ref|YP_006363123.1| trNA pseudouridine synthase D [Thermogladius cellulolyticus 1633]
gi|388525787|gb|AFK50985.1| tRNA pseudouridine synthase D [Thermogladius cellulolyticus 1633]
Length = 361
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 103/233 (44%), Gaps = 23/233 (9%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G++ + K DT EAL ++SK I ++F G KDK S S Q V V + +
Sbjct: 50 GEYAVLEVRKRGLDTYEALRIMSKEADIPLQNFLVLGLKDKDSTSVQYVFVKRSLLPENF 109
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+L + + R+ F K G LLGNRF I + K + +G N
Sbjct: 110 SLERGGVEARVVGFSRGKPGK--SALLGNRFKIRFETSHESDHQLAKEIMRLVVEHGLPN 167
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILD---PREGERNEISKAREYYKETDDI 205
Y+G QRFG THL+G +L + KM+L P E E++ +S+
Sbjct: 168 YYGYQRFGVKRPVTHLLGKAVLEADSAFFAKMLLSDTTPLESEKSVLSR----------- 216
Query: 206 DGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWN 258
TL K L+ E+ C + P A+ + LR +YV +Y S+L+N
Sbjct: 217 --TLMKFDNSLLYEK---MCYEMPPLE--DCGLALNKKLRNLYVDAYVSYLFN 262
>gi|419549337|ref|ZP_14087936.1| tRNA pseudouridine synthase D [Campylobacter coli 2685]
gi|380526088|gb|EIA51565.1| tRNA pseudouridine synthase D [Campylobacter coli 2685]
Length = 372
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 83/152 (54%), Gaps = 3/152 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L H+ K++ T EAL ++S+ G+ R FG+AG KDK+ + Q +++ K+ S L+
Sbjct: 46 GEHLILHINKKDLTTNEALKILSETSGVKIRDFGYAGLKDKQGSTFQYLSIPKKFESFLS 105
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ + I L F + + L +G L GN F I L+ V+ ++ + +L + GF N
Sbjct: 106 NFSHPKLKI-LETFIH-ENKLRIGHLKGNTFFIRLKKVLPSDALKLEQALMNLDKQGFAN 163
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM 180
YFG QRFG + G +LRG+ VKM
Sbjct: 164 YFGYQRFGKFG-DNYKEGLEILRGKKMKNVKM 194
>gi|393795239|ref|ZP_10378603.1| tRNA pseudouridine synthase TruD, partial [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 167
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 68/118 (57%), Gaps = 2/118 (1%)
Query: 147 INYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILD-PREGERNEISKAREYYKETDDI 205
+N++G QRFGS THL+G LLR ++K AV++I+ + + E ++ RE + +
Sbjct: 17 LNFYGYQRFGSKRPVTHLIGKALLRRDFKKAVELIVSFTSKYDSKENTEIREKLVDKSNY 76
Query: 206 DGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASA 263
L ++P + ER +LQ + + +A+ A+P LR YV +YQS+L+N SA
Sbjct: 77 KKYLDQVPPQMDIERIVLQEMID-HDDAQKAIHAVPLNLRRFYVQAYQSYLFNQTLSA 133
>gi|393795005|ref|ZP_10378369.1| tRNA pseudouridine synthase TruD, partial [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 166
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 67/118 (56%), Gaps = 2/118 (1%)
Query: 147 INYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILD-PREGERNEISKAREYYKETDDI 205
+N++G QRFGS THL+G LLR ++K AV++I+ + E ++ RE + +
Sbjct: 17 LNFYGYQRFGSKRPVTHLIGKALLRRDFKKAVELIVSFTSRYDSKENTEIREKLVDKSNY 76
Query: 206 DGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASA 263
L ++P + ER +LQ + + +A+ A+P LR YV +YQS+L+N SA
Sbjct: 77 KKYLNQVPPQMDIERIVLQEMID-HDDAQKAIHAVPLNLRRFYVQAYQSYLFNQTLSA 133
>gi|410996301|gb|AFV97766.1| hypothetical protein B649_07270 [uncultured Sulfuricurvum sp.
RIFRC-1]
Length = 363
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 74/147 (50%), Gaps = 3/147 (2%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L H+ K+N T + + + S LGI R G+AG KDK + + Q +++ ++ S L
Sbjct: 37 GEHLVLHVRKKNLSTWQMIDVFSNHLGIKGRDIGYAGLKDKNAQTKQYISLPRKFESVLE 96
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
GI++ + Y + +G L GNRF I L+ V + IK + + + G N
Sbjct: 97 TFEHE--GIKILEKTYHNNKIRVGHLKGNRFFIRLKKVNPTAAVKIKEALKMIKQQGMPN 154
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWK 175
YFG QRFG + G +L GE K
Sbjct: 155 YFGFQRFGIDG-ENYKKGQAILAGELK 180
>gi|410449266|ref|ZP_11303325.1| tRNA pseudouridine synthase D [Leptospira sp. Fiocruz LV3954]
gi|410016925|gb|EKO78998.1| tRNA pseudouridine synthase D [Leptospira sp. Fiocruz LV3954]
Length = 428
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 76/290 (26%), Positives = 125/290 (43%), Gaps = 24/290 (8%)
Query: 14 NPFDSRGSE----NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDK 69
NP D R E ++ ++ GK+ F L+K +T +AL ISK + G+AG KD+
Sbjct: 38 NPGDFRVEEILRPDFIQKSGKWTIFRLHKSGWNTLDALLKISKESKVSISEIGYAGKKDR 97
Query: 70 RSVSTQRVTVFKQRASKLAALNKRLIGI-RLGDFCYVKEGLLLGQLLGNRFTITLRGVVV 128
+ ++Q ++ K + K L + +L + L GNRF + LR ++
Sbjct: 98 HATTSQYLS-----CQKPLKIPKELGNVLQLEKIGFSNRPLSPEANAGNRFVLILRNLLE 152
Query: 129 DSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREG 187
+ ++ + +G NGFINY+ QRF L + L+G+ ++ +K+IL DP G
Sbjct: 153 REIESVRNNFERIGNNGFINYYDSQRFSRFHPEFKLPILSYLKGDAETCLKLILTDPYAG 212
Query: 188 ERNEISKAREYYKETDDIDGTL---RKLPRHLVAERAILQCLKK---CPGNYLQALKAIP 241
E+ + AR+ K + G +K + R ++ Y + P
Sbjct: 213 EKKQ---ARDRKKNIQAVWGNWSQCKKWSDGKLENRIFFDLSRERNPTQKTYSDLIFQFP 269
Query: 242 RTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVV----GDLVFCKGDDTE 287
+M V S QS +WN S + G V + G L F TE
Sbjct: 270 EEELLMLVSSMQSLIWNEFVSELLISEGYSGVRIKTKTGFLFFPGESSTE 319
>gi|19074373|ref|NP_585879.1| similarity to HYPOTHETICAL PROTEIN YO7T_yeast [Encephalitozoon
cuniculi GB-M1]
gi|19069015|emb|CAD25483.1| similarity to HYPOTHETICAL PROTEIN YO7T_yeast [Encephalitozoon
cuniculi GB-M1]
gi|449329408|gb|AGE95680.1| hypothetical protein ECU06_1230 [Encephalitozoon cuniculi]
Length = 487
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 87/177 (49%), Gaps = 29/177 (16%)
Query: 111 LGQLLGNRFTITLRGVVVDSEDVIKASANSLGRN---GFINYFGLQRFGSGSVPTHLVGA 167
LG L GNRF+I L+G L RN GF+NYFG QRFG+ + H +G
Sbjct: 257 LGDLRGNRFSIVLKGF----------RDRELVRNLEKGFLNYFGQQRFGN-KLRNHEIGY 305
Query: 168 TLLRGEWKSAVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLK 227
+L +++ A+ I+ R G+ E+ A Y + D T E+ +L+C
Sbjct: 306 DILTRKYEEAIDKIM--RGGKCYELYVAGRYEEALGLGDST----------EKYVLKCKS 353
Query: 228 KCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGD 284
K + + R LRM+Y+HSYQ +N A +AR++ HG V+ GD V G+
Sbjct: 354 KGMKEK-DIVYGLRRELRMLYLHSYQGLKFNEAINARME-HGA-RVIEGDTVCVNGE 407
>gi|419606662|ref|ZP_14141019.1| tRNA pseudouridine synthase D [Campylobacter coli LMG 9860]
gi|380586626|gb|EIB07910.1| tRNA pseudouridine synthase D [Campylobacter coli LMG 9860]
Length = 372
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 83/152 (54%), Gaps = 3/152 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L H+ K++ T EAL ++S++ G+ R FG+AG KDK+ + Q +++ K+ S L
Sbjct: 46 GEHLILHINKKDLSTNEALRILSELSGVKMRDFGYAGLKDKQGSTFQYLSMPKKFESFLT 105
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ + I L F + + L +G L GN F I L+ V+ ++ + +L + GF N
Sbjct: 106 NFSHPKLKI-LETFIH-ENKLRIGHLKGNSFFIRLKKVMPSDALKLEQALINLDKQGFAN 163
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM 180
YFG QRFG + G +LRG+ VKM
Sbjct: 164 YFGYQRFGKFG-DNYKEGLEILRGKKMKNVKM 194
>gi|86153046|ref|ZP_01071251.1| conserved hypothetical protein TIGR00094 [Campylobacter jejuni
subsp. jejuni HB93-13]
gi|419668766|ref|ZP_14198572.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
1997-11]
gi|85843931|gb|EAQ61141.1| conserved hypothetical protein TIGR00094 [Campylobacter jejuni
subsp. jejuni HB93-13]
gi|380648502|gb|EIB65351.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
1997-11]
Length = 372
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 83/152 (54%), Gaps = 3/152 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L H+ K++ T EAL ++S+ GI R FG+AG KDK+ + Q +++ K+ S L+
Sbjct: 46 GEHLVLHINKKDLTTNEALKILSEASGIKIRDFGYAGLKDKQGSTFQYLSMPKKFESFLS 105
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ + I L F + + L +G L GN F I L+ V+ ++ + +L + GF N
Sbjct: 106 NFSHPKLKI-LETFIH-ENKLRIGHLKGNSFFIRLKKVLPSDALKLEQALMNLDKQGFAN 163
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM 180
YFG QRFG + G +LRG+ VKM
Sbjct: 164 YFGYQRFGKFG-DNYKEGLEILRGKKMKNVKM 194
>gi|283955062|ref|ZP_06372565.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
414]
gi|283793429|gb|EFC32195.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
414]
Length = 372
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 83/152 (54%), Gaps = 3/152 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L H+ K++ T EAL ++S+ G+ R FG+AG KDK+ ++ Q +++ K+ S L
Sbjct: 46 GEHLILHINKKDLTTNEALKILSEASGVKMRDFGYAGLKDKQGLTFQYLSMPKKFESFLL 105
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ + I L F + + L +G L GN F I L+ V+ ++ + +L + GF N
Sbjct: 106 NFSHSKLKI-LETFIH-ENKLRIGHLKGNSFFIRLKKVLPSDALKLEQALINLNKQGFAN 163
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM 180
YFG QRFG + G +LRG+ VKM
Sbjct: 164 YFGYQRFGKFG-DNYKEGLEILRGKKMKNVKM 194
>gi|320334332|ref|YP_004171043.1| tRNA pseudouridine synthase D [Deinococcus maricopensis DSM 21211]
gi|319755621|gb|ADV67378.1| tRNA pseudouridine synthase D [Deinococcus maricopensis DSM 21211]
Length = 356
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 82/157 (52%), Gaps = 9/157 (5%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G L H+ K T + + + LG+ R G AG KD+ +V+TQ +++ + ++L
Sbjct: 44 GDHLYLHVEKTGHTTAFVVQELQRQLGLRDRDIGVAGLKDRHAVTTQYLSIPAKHEARLP 103
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ + G+R+ D L +G L GNRFT+ + G +E +A+ ++L + G N
Sbjct: 104 TFS--VEGVRVLDVTRHTNKLGMGHLAGNRFTVRVSGAPGTAEQA-RATLDALVQFGLPN 160
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPR 185
YFG QRFG G + GA +LRGE + + DPR
Sbjct: 161 YFGPQRFGLGGLNAE-EGARVLRGESR-----LRDPR 191
>gi|401826756|ref|XP_003887471.1| TruD-like pseudouridine synthase [Encephalitozoon hellem ATCC
50504]
gi|395459989|gb|AFM98490.1| TruD-like pseudouridine synthase [Encephalitozoon hellem ATCC
50504]
Length = 486
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 92/174 (52%), Gaps = 23/174 (13%)
Query: 111 LGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLL 170
LG L GNRF+I L+G ++++K +L R GF+NYFG QRFG+ + H +G +L
Sbjct: 256 LGDLKGNRFSIALKGF--KDKELVK----NLER-GFLNYFGQQRFGN-KLRNHEIGYDIL 307
Query: 171 RGEWKSAVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCP 230
++ A+ I+ + G+ +E +Y + D T E+ IL+C K
Sbjct: 308 TKRYEEAIDKIM--KAGKCHEFYVGGKYEEGMGLGDST----------EKYILKCKSKGM 355
Query: 231 GNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGD 284
+ + R LRM+Y+HSYQS +N A ++R++ G VV GD+V G+
Sbjct: 356 KGK-DMVYGLRRELRMLYLHSYQSLKFNEAINSRMELGG--DVVKGDMVCVGGE 406
>gi|419557027|ref|ZP_14094990.1| tRNA pseudouridine synthase D [Campylobacter coli 84-2]
gi|380534012|gb|EIA58859.1| tRNA pseudouridine synthase D [Campylobacter coli 84-2]
Length = 372
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 83/152 (54%), Gaps = 3/152 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L H+ K++ T EAL ++S+ G+ R FG+AG KDK+ + Q +++ K+ S LA
Sbjct: 46 GEHLILHINKKDLTTNEALKILSETSGVKIRDFGYAGLKDKQGSTFQYLSMPKKFESFLA 105
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ + I L F + + L +G L GN F I L+ V+ ++ + +L + GF N
Sbjct: 106 NFSHPKLKI-LEIFTH-ENKLRIGHLKGNSFFIRLKKVLPSDALKLEQALINLDKQGFAN 163
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM 180
YFG QRFG + G +LRG+ VKM
Sbjct: 164 YFGYQRFGKFG-DNYKEGLEILRGKKMKNVKM 194
>gi|153951422|ref|YP_001398746.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. doylei
269.97]
gi|189036617|sp|A7H5G6.1|TRUD_CAMJD RecName: Full=tRNA pseudouridine synthase D; AltName: Full=tRNA
pseudouridine(13) synthase; AltName: Full=tRNA
pseudouridylate synthase D; AltName: Full=tRNA-uridine
isomerase D
gi|152938868|gb|ABS43609.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. doylei
269.97]
Length = 372
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 82/152 (53%), Gaps = 3/152 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L H+ K++ T EAL ++S+ G+ R FG+AG KDK+ + Q +++ K+ S L+
Sbjct: 46 GEHLILHINKKDLSTNEALKILSEQSGVKMRDFGYAGLKDKQGSTFQYLSIPKKFESFLS 105
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ + I L F + + L +G L GN F I L+ V+ ++ +L + GF N
Sbjct: 106 NFSHSKLKI-LETFTH-ENKLRIGHLKGNSFFIRLKKVMPSDALKLEQVLMNLDKQGFAN 163
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM 180
YFG QRFG + G +LRG+ +KM
Sbjct: 164 YFGYQRFGKFG-DNYKEGLEILRGKKMKNIKM 194
>gi|408405222|ref|YP_006863205.1| tRNA pseudouridine synthase D [Candidatus Nitrososphaera gargensis
Ga9.2]
gi|408365818|gb|AFU59548.1| putative tRNA pseudouridine synthase D [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 420
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 116/253 (45%), Gaps = 16/253 (6%)
Query: 33 RFHLY---KENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAA 89
R+ LY K + D+ AL I + + R G KD ++V+TQ + + +
Sbjct: 58 RYPLYILEKHDIDSNHALFEIERECRMRLRVMGI---KDAKAVTTQYASADRVMRNPPGE 114
Query: 90 LNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINY 149
L + + L F + L L GN+F IT+ + + +G N+
Sbjct: 115 LKTKHTRLTLEGF--TRRPLGKEFLAGNKFEITIHRPRSHDLSGLLPEIDKVG-----NF 167
Query: 150 FGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISK-AREYYKETDDIDGT 208
+GLQRFGS + THLVG +++ ++ AV+++L SK R + +
Sbjct: 168 YGLQRFGSERLVTHLVGREIVKRNFRRAVELLLSYTTEYDTPASKEIRSKSADPGNYRQV 227
Query: 209 LRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAAS-ARVQK 267
LR LPR + ER +L L + + AL+ +P T+R ++V +YQ++++N S A +
Sbjct: 228 LRILPRGMDIERQVLTAL-VAGKDAVSALRTVPITIRRLFVQAYQAYIFNKCLSTAVING 286
Query: 268 HGTEHVVVGDLVF 280
GDL F
Sbjct: 287 EDLLQPAAGDLCF 299
>gi|336452545|ref|YP_004607011.1| tRNA pseudouridine 13 synthase [Helicobacter bizzozeronii CIII-1]
gi|335332572|emb|CCB79299.1| tRNA pseudouridine 13 synthase [Helicobacter bizzozeronii CIII-1]
Length = 380
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 68/124 (54%), Gaps = 2/124 (1%)
Query: 35 HLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRL 94
H+ K+NK T E L ++ +LG +FG+AG KDK ++++Q +++ K+ S L + + L
Sbjct: 54 HVRKKNKSTWEMLSFLANVLGCPLSAFGYAGLKDKDALTSQYISLPKEYLSTLESHAQTL 113
Query: 95 I--GIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGL 152
I++ D + LG L GNRF + L+ V + I L + GF NYFG
Sbjct: 114 QDHNIKILDTTCHSHKIRLGHLKGNRFFMRLKKVTPLNAQKISHVLEFLTQWGFPNYFGA 173
Query: 153 QRFG 156
QRFG
Sbjct: 174 QRFG 177
>gi|419597591|ref|ZP_14132563.1| tRNA pseudouridine synthase D [Campylobacter coli LMG 23341]
gi|419599071|ref|ZP_14133940.1| tRNA pseudouridine synthase D [Campylobacter coli LMG 23342]
gi|380573245|gb|EIA95396.1| tRNA pseudouridine synthase D [Campylobacter coli LMG 23341]
gi|380576082|gb|EIA98142.1| tRNA pseudouridine synthase D [Campylobacter coli LMG 23342]
Length = 372
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 83/152 (54%), Gaps = 3/152 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L H+ K++ T EAL ++S+ G+ R FG+AG KDK+ + Q +++ K+ S L+
Sbjct: 46 GEHLILHINKKDLSTNEALKILSETSGVKIRDFGYAGLKDKQGSTFQYLSMPKKFESFLS 105
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ + I L F + + L +G L GN F I L+ V+ ++ + +L + GF N
Sbjct: 106 NFSHPKLKI-LETFIH-ENKLRIGHLKGNTFFIRLKKVLPSDALKLEQALINLDKQGFAN 163
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM 180
YFG QRFG + G +LRG+ VKM
Sbjct: 164 YFGYQRFGKFG-DNYKEGLEILRGKKMKNVKM 194
>gi|148925629|ref|ZP_01809317.1| hypothetical protein Cj8486_1495c [Campylobacter jejuni subsp.
jejuni CG8486]
gi|145845639|gb|EDK22730.1| hypothetical protein Cj8486_1495c [Campylobacter jejuni subsp.
jejuni CG8486]
Length = 372
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 83/152 (54%), Gaps = 3/152 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L H+ K++ T EAL ++S+ G+ R FG+AG KDK+ + Q +++ K+ S L+
Sbjct: 46 GEHLILHINKKDLTTNEALKILSETSGVKIRDFGYAGLKDKQGSTFQYLSMPKKFESFLS 105
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ + I L F + + L +G L GN F I L+ V+ ++ + +L + GF N
Sbjct: 106 NFSHPKLKI-LETFIH-ENKLRIGHLKGNTFFIRLKKVLPSDALKLEQALMNLDKQGFTN 163
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM 180
YFG QRFG + G +LRG+ VKM
Sbjct: 164 YFGYQRFGKFG-DNYKEGLEILRGKKMKNVKM 194
>gi|419653599|ref|ZP_14184567.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
2008-872]
gi|419665505|ref|ZP_14195571.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
1997-7]
gi|419686562|ref|ZP_14214992.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
1798]
gi|419692613|ref|ZP_14220696.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
1928]
gi|380632396|gb|EIB50486.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
2008-872]
gi|380643285|gb|EIB60518.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
1997-7]
gi|380664109|gb|EIB79721.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
1798]
gi|380669208|gb|EIB84498.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
1928]
Length = 372
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 83/152 (54%), Gaps = 3/152 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L H+ K++ T EAL ++S+ G+ R FG+AG KDK+ + Q +++ K+ S L+
Sbjct: 46 GEHLILHINKKDLTTNEALKILSETSGVKIRDFGYAGLKDKQGSTFQYLSMPKKFESFLS 105
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ + I L F + + L +G L GN F I L+ V+ ++ + +L + GF N
Sbjct: 106 NFSHPKLKI-LETFIH-ENKLRIGHLKGNSFFIRLKKVMPSDALKLEQALMNLDKQGFAN 163
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM 180
YFG QRFG + G +LRG+ VKM
Sbjct: 164 YFGYQRFGKFG-DNYKEGLEILRGKKMKNVKM 194
>gi|419684102|ref|ZP_14212713.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
1577]
gi|380667541|gb|EIB82976.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
1577]
Length = 372
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 83/152 (54%), Gaps = 3/152 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L H+ K++ T EAL ++S+ G+ R FG+AG KDK+ + Q +++ K+ S L+
Sbjct: 46 GEHLILHINKKDLTTNEALKILSETSGVKIRDFGYAGLKDKQGSTFQYLSMPKKFESFLS 105
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ + I L F + + L +G L GN F I L+ V+ ++ + +L + GF N
Sbjct: 106 NFSHPKLKI-LETFIH-ENKLRIGHLKGNTFFIRLKKVLPSDALKLEQALMNLDKQGFTN 163
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM 180
YFG QRFG + G +LRG+ VKM
Sbjct: 164 YFGYQRFGKFG-DNYKEGLEILRGKKMKNVKM 194
>gi|57168996|ref|ZP_00368125.1| tRNA pseudouridine synthase D, putative [Campylobacter coli RM2228]
gi|419625255|ref|ZP_14158277.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
LMG 23223]
gi|419627883|ref|ZP_14160775.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
LMG 23263]
gi|419631117|ref|ZP_14163714.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
LMG 23264]
gi|419655781|ref|ZP_14186621.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
2008-988]
gi|419664182|ref|ZP_14194350.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
1997-4]
gi|419680973|ref|ZP_14209823.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
140-16]
gi|419689966|ref|ZP_14218184.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
1893]
gi|424848927|ref|ZP_18273399.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
D2600]
gi|57019662|gb|EAL56351.1| tRNA pseudouridine synthase D, putative [Campylobacter coli RM2228]
gi|356487823|gb|EHI17763.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
D2600]
gi|380605204|gb|EIB25184.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
LMG 23223]
gi|380606135|gb|EIB26063.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
LMG 23263]
gi|380611565|gb|EIB31112.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
LMG 23264]
gi|380636412|gb|EIB54113.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
2008-988]
gi|380641398|gb|EIB58750.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
1997-4]
gi|380659165|gb|EIB75148.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
140-16]
gi|380669841|gb|EIB85110.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
1893]
Length = 372
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 83/152 (54%), Gaps = 3/152 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L H+ K++ T EAL ++S+ G+ R FG+AG KDK+ + Q +++ K+ S L+
Sbjct: 46 GEHLILHINKKDLTTNEALKILSETSGVKIRDFGYAGLKDKQGSTFQYLSMPKKFESFLS 105
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ + I L F + + L +G L GN F I L+ V+ ++ + +L + GF N
Sbjct: 106 NFSHPKLKI-LETFIH-ENKLRIGHLKGNTFFIRLKKVLPSDALKLEQALMNLDKQGFTN 163
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM 180
YFG QRFG + G +LRG+ VKM
Sbjct: 164 YFGYQRFGKFG-DNYKEGLEILRGKKMKNVKM 194
>gi|15897125|ref|NP_341730.1| hypothetical protein SSO0174 [Sulfolobus solfataricus P2]
gi|284174366|ref|ZP_06388335.1| hypothetical protein Ssol98_06877 [Sulfolobus solfataricus 98/2]
gi|384433633|ref|YP_005642991.1| tRNA pseudouridine synthase D TruD [Sulfolobus solfataricus 98/2]
gi|37089648|sp|Q980V2.1|TRUD_SULSO RecName: Full=Probable tRNA pseudouridine synthase D; AltName:
Full=tRNA pseudouridine(13) synthase; AltName: Full=tRNA
pseudouridylate synthase D; AltName: Full=tRNA-uridine
isomerase D
gi|13813306|gb|AAK40520.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
gi|261601787|gb|ACX91390.1| tRNA pseudouridine synthase D TruD [Sulfolobus solfataricus 98/2]
Length = 377
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 130/285 (45%), Gaps = 27/285 (9%)
Query: 17 DSRGSENWP-EQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQ 75
D + +++W E GK+ F L K D A IS++ +L + G KD ++++Q
Sbjct: 40 DFKPAQDWKGETKGKYAVFLLTKWGIDHFSA---ISEVQKVLHSKVNYIGIKDANAITSQ 96
Query: 76 RVTV-FKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVI 134
V + ++ + R ++ F K L GN F I+L + D++
Sbjct: 97 LVYIPLNEKQELIEKYQSRSFILKFLGFSSKK----LNHT-GNIFEISLS---ISDFDIV 148
Query: 135 KASANSLGRNGFINYF-GLQRFGSGSVPTHLVGATLLRGEWKSAVKMILD-PREGERNEI 192
+ +N ++ F G QRFG+ THL+G LLR +W+ A +IL P E E
Sbjct: 149 IERIEQIKKNPYLPAFIGYQRFGTRRPITHLIGKYLLRRDWEKAFYLILTYPFLSESKET 208
Query: 193 SKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKA--IPRTLRMMYVH 250
R+ E D +R +P E+ +L+ + YL ALK+ IP +L Y+
Sbjct: 209 IDIRKLIME-GDFKEAVRSIPSKFKQEKLLLKNYMRFNSYYL-ALKSSFIPISL---YLD 263
Query: 251 SYQSFLWNHAASARVQKHGTEHVVVGDLV-----FCKGDDTEKEL 290
+YQS+L+N S ++ ++ + V L+ F DD KE+
Sbjct: 264 AYQSYLFNLYLSRKLDEYKNLNDKVNLLIRIPIYFNNCDDVCKEI 308
>gi|419652741|ref|ZP_14183801.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
2008-894]
gi|380628151|gb|EIB46482.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
2008-894]
Length = 372
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 84/152 (55%), Gaps = 3/152 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L H+ K++ T EAL ++S++ G+ R FG+AG KDK+ + Q +++ K+ S L+
Sbjct: 46 GEHLILHINKKDLTTNEALKILSEVSGVKIRDFGYAGLKDKQGSTFQYLSMPKKFESFLS 105
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ + I L F + + L +G L GN F I L+ V+ ++ + +L + GF N
Sbjct: 106 NFSHPKLKI-LEIFTH-ENKLRIGHLKGNSFFIRLKKVMPSDALKLEQALMNLDKQGFAN 163
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM 180
YFG QRFG + G +LRG+ VKM
Sbjct: 164 YFGYQRFGKFG-DNYKEGLEILRGKKMKNVKM 194
>gi|419623777|ref|ZP_14156900.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
LMG 23218]
gi|419638852|ref|ZP_14170899.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
86605]
gi|380600293|gb|EIB20634.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
LMG 23218]
gi|380617891|gb|EIB37046.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
86605]
Length = 372
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 83/152 (54%), Gaps = 3/152 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L H+ K++ T EAL ++S+ G+ R FG+AG KDK+ + Q +++ K+ S L+
Sbjct: 46 GEHLILHINKKDLTTNEALKILSETSGVKIRDFGYAGLKDKQGSTFQYLSMPKKFESFLS 105
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ + I L F + + L +G L GN F I L+ V+ ++ + +L + GF N
Sbjct: 106 NFSHPKLKI-LETFIH-ENKLRIGHLKGNTFFIRLKKVLPSDALKLEQALMNLDKQGFTN 163
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM 180
YFG QRFG + G +LRG+ VKM
Sbjct: 164 YFGYQRFGKFG-DNYKEGLEILRGKKMKNVKM 194
>gi|419697121|ref|ZP_14224858.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
LMG 23211]
gi|380679411|gb|EIB94255.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
LMG 23211]
Length = 367
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 83/152 (54%), Gaps = 3/152 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L H+ K++ T EAL ++S+ G+ R FG+AG KDK+ + Q +++ K+ S L+
Sbjct: 46 GEHLILHINKKDLTTNEALKILSETSGVKIRDFGYAGLKDKQGSTFQYLSMPKKFESFLS 105
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ + I L F + + L +G L GN F I L+ V+ ++ + +L + GF N
Sbjct: 106 NFSHPKLKI-LETFIH-ENKLRIGHLKGNSFFIRLKKVMPSDALKLEQALMNLDKQGFAN 163
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM 180
YFG QRFG + G +LRG+ VKM
Sbjct: 164 YFGYQRFGKFG-DNYKEGLEILRGKKMKNVKM 194
>gi|57238481|ref|YP_179612.1| tRNA pseudouridine synthase D [Campylobacter jejuni RM1221]
gi|384443825|ref|YP_005660077.1| tRNA pseudouridine 13 synthase [Campylobacter jejuni subsp. jejuni
S3]
gi|419644774|ref|ZP_14176348.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
LMG 9081]
gi|424846054|ref|ZP_18270653.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
NW]
gi|62901171|sp|Q5HSX3.1|TRUD_CAMJR RecName: Full=tRNA pseudouridine synthase D; AltName: Full=tRNA
pseudouridine(13) synthase; AltName: Full=tRNA
pseudouridylate synthase D; AltName: Full=tRNA-uridine
isomerase D
gi|57167285|gb|AAW36064.1| tRNA pseudouridine synthase D, putative [Campylobacter jejuni
RM1221]
gi|315058912|gb|ADT73241.1| tRNA pseudouridine 13 synthase [Campylobacter jejuni subsp. jejuni
S3]
gi|356486397|gb|EHI16381.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
NW]
gi|380621520|gb|EIB40322.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
LMG 9081]
Length = 372
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 83/152 (54%), Gaps = 3/152 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L H+ K++ T EAL ++S+ G+ R FG+AG KDK+ + Q +++ K+ S L+
Sbjct: 46 GEHLILHINKKDLTTNEALKILSETSGVKIRDFGYAGFKDKQGSTFQYLSMPKKFESFLS 105
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ + I L F + + L +G L GN F I L+ V+ ++ + +L + GF N
Sbjct: 106 NFSHPKLKI-LETFIH-ENKLRIGHLKGNTFFIRLKKVLPSDALKLEQALMNLDKQGFTN 163
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM 180
YFG QRFG + G +LRG+ VKM
Sbjct: 164 YFGYQRFGKFG-DNYKEGLEILRGKKMKNVKM 194
>gi|407411242|gb|EKF33391.1| hypothetical protein MOQ_002739 [Trypanosoma cruzi marinkellei]
Length = 651
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 75/283 (26%), Positives = 122/283 (43%), Gaps = 39/283 (13%)
Query: 5 SKKRKERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFA 64
++ R++R + D S G F + K N D + L+S+ + + A
Sbjct: 260 TRHREKRARDDADDASS-------GLFTHLLVRKRNLDMMKLRLLLSRQFDVSENAVCTA 312
Query: 65 GTKDKRSVSTQRVTV----FKQRASKLAALNKRLIG----------IRLGDFCYVKEGLL 110
G KDK +V+ QR +V ++ + RL+ ++L + C G
Sbjct: 313 GLKDKCAVTYQRCSVPLSTQNLKSKEQHGETARLVWPGDPSSYAEILQLSEPCATPVG-- 370
Query: 111 LGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFGS--GSVPTHLVGAT 168
+GQL GN F++ L V S + + NGF+NYFG QRF S H VG
Sbjct: 371 IGQLNGNWFSVRLVDVRGMSFCELVQRVRHIESNGFLNYFGQQRFSEHVSSTKDH-VGLH 429
Query: 169 LLRGEWKSAVKMILDPREG------ERNEISKAREYYKETDDIDGTLRKLPRHLVAERAI 222
L+ G W AV+ IL G ER +I + ++ I L++L R +
Sbjct: 430 LMAGRWAEAVQSILSCVPGIYASFPERMKIRYVQTSARDAVYIVQALQRLHRTQYTSPSN 489
Query: 223 LQCL---KKCPGNYLQ----ALKAIPRTLRMMYVHSYQSFLWN 258
C+ C + Q AL A+P +R+++V++ QS ++N
Sbjct: 490 PLCMDDVANCTSRWQQLCHDALLAVPYNIRVLWVNAAQSLIFN 532
>gi|419536608|ref|ZP_14076087.1| tRNA pseudouridine synthase D [Campylobacter coli 111-3]
gi|419569452|ref|ZP_14106513.1| tRNA pseudouridine synthase D [Campylobacter coli 7--1]
gi|419577910|ref|ZP_14114451.1| tRNA pseudouridine synthase D [Campylobacter coli 59-2]
gi|380517845|gb|EIA43951.1| tRNA pseudouridine synthase D [Campylobacter coli 111-3]
gi|380549314|gb|EIA73188.1| tRNA pseudouridine synthase D [Campylobacter coli 7--1]
gi|380556202|gb|EIA79462.1| tRNA pseudouridine synthase D [Campylobacter coli 59-2]
Length = 372
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 84/152 (55%), Gaps = 3/152 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L ++ K++ T EAL ++S++ G+ R FG+AG KDK+ + Q +++ K+ S LA
Sbjct: 46 GEHLILYINKKDLSTNEALRILSEVSGVKMRDFGYAGLKDKQGSTFQYLSMPKKFESFLA 105
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ + I L F + + L +G L GN F I L+ V+ ++ + +L + GF N
Sbjct: 106 NFSHPKLKI-LETFVH-ENKLRIGHLKGNSFFIRLKKVLPSDALKLEQALINLDKQGFAN 163
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM 180
YFG QRFG + G +LRG+ VKM
Sbjct: 164 YFGYQRFGKFG-DNYKEGLEILRGKKMKNVKM 194
>gi|330835725|ref|YP_004410453.1| tRNA pseudouridine synthase D, TruD [Metallosphaera cuprina Ar-4]
gi|329567864|gb|AEB95969.1| tRNA pseudouridine synthase D, TruD [Metallosphaera cuprina Ar-4]
Length = 361
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 112/241 (46%), Gaps = 26/241 (10%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
GK+ + L K D + ++K+LG P G+ G KD + + Q + V K+R +
Sbjct: 50 GKYAVYLLRKRGLDHFSVMAKLTKILGERP---GYLGIKDANASTEQLIYVRKKR---IE 103
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ + I F K L GNRF ITL V E + + R G +
Sbjct: 104 SYSNSSFSIEFKGFTNQK----LNHT-GNRFEITL----VSDEAELTKRVEMIKREGTLP 154
Query: 149 YF-GLQRFGSGSVPTHLVGATLLRGEWKSAVKMILD-PREGERNEISKAREYY--KETDD 204
F G QRFG+ THL+G L + +W AV IL P E+ EI + R+ Y ++TD
Sbjct: 155 AFIGYQRFGTRRPITHLIGKALSQRDWCKAVDFILGYPFSEEKKEIKQFRKDYMKRKTDR 214
Query: 205 IDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASAR 264
+ + +P+ ER + L G+ L ALK P L Y+ ++QS+L+N S +
Sbjct: 215 LQ--ISNVPKQ---EREVYLELNSS-GSCLSALKRSPVKLS-FYLEAFQSYLFNRVLSRK 267
Query: 265 V 265
+
Sbjct: 268 L 268
>gi|419657663|ref|ZP_14188312.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
1997-1]
gi|380634432|gb|EIB52312.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
1997-1]
Length = 372
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 83/152 (54%), Gaps = 3/152 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L H+ K++ T EAL ++S+ G+ R FG+AG KDK+ + Q +++ K+ S L+
Sbjct: 46 GEHLILHINKKDLTTNEALKILSETSGVKIRDFGYAGFKDKQGSTFQYLSMPKKFESFLS 105
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ + I L F + + L +G L GN F I L+ V+ ++ + +L + GF N
Sbjct: 106 NFSHPKLKI-LETFIH-ENKLRIGHLKGNTFFIRLKKVLPSDALKLEQALMNLDKQGFTN 163
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM 180
YFG QRFG + G +LRG+ VKM
Sbjct: 164 YFGYQRFGKFG-DNYKEGLEILRGKKMKNVKM 194
>gi|430742494|ref|YP_007201623.1| hypothetical protein Sinac_1549 [Singulisphaera acidiphila DSM
18658]
gi|430014214|gb|AGA25928.1| hypothetical protein Sinac_1549 [Singulisphaera acidiphila DSM
18658]
Length = 390
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 111/250 (44%), Gaps = 13/250 (5%)
Query: 26 EQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFK--QR 83
E G+F+ + L K T EA+ IS+ + R + G KD+ +V+ Q +T+F+ +R
Sbjct: 22 EPRGRFVYYRLTKRGLGTLEAIEAISRRWNVPGRRISYGGLKDRHAVTVQYLTIFEGPER 81
Query: 84 ASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGR 143
+ + +G + E GNRF + LR + S D + + R
Sbjct: 82 PLHETSFDLEPVG-------RLPEPYSPSHFRGNRFVVVLRDLSPHSLDQALKAVAEVPR 134
Query: 144 NGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYYKET 202
+G NYF QRFGS + L G+ + A ++ + +P +R + +ET
Sbjct: 135 DGLPNYFDDQRFGSVGFGGGFIAQAWLTGDHERAFRLAMAEPNPSDRPTAKAEKAILRET 194
Query: 203 -DDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAA 261
+ +L R R+++ L P ++ A + R LR +Y ++QS LWN
Sbjct: 195 WGNWAEAKSRLDRS--NARSLVTYLVDHPTDFRGAFARLRRELRSLYFSAFQSHLWNLIL 252
Query: 262 SARVQKHGTE 271
+ ++++ E
Sbjct: 253 ARWIERNTRE 262
>gi|419619995|ref|ZP_14153449.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
51494]
gi|419647740|ref|ZP_14179096.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
LMG 9217]
gi|419659125|ref|ZP_14189667.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
2008-979]
gi|419667472|ref|ZP_14197441.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
1997-10]
gi|380601973|gb|EIB22272.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
51494]
gi|380627253|gb|EIB45658.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
LMG 9217]
gi|380640302|gb|EIB57760.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
2008-979]
gi|380645920|gb|EIB62924.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
1997-10]
Length = 372
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 83/152 (54%), Gaps = 3/152 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L H+ K++ T EAL ++S+ G+ R FG+AG KDK+ + Q +++ K+ S L+
Sbjct: 46 GEHLILHINKKDLTTNEALKILSEASGVKIRDFGYAGLKDKQGSTFQYLSMPKKFESFLS 105
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ + I L F + + L +G L GN F I L+ V+ ++ + +L + GF N
Sbjct: 106 NFSHSKLKI-LEIFTH-ENKLRIGHLKGNSFFIRLKKVLPSDALKLEQALMNLDKQGFAN 163
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM 180
YFG QRFG + G +LRG+ VKM
Sbjct: 164 YFGYQRFGKFG-DNYKEGLEILRGKKMKNVKM 194
>gi|418718041|ref|ZP_13277578.1| tRNA pseudouridine synthase D [Leptospira borgpetersenii str. UI
09149]
gi|410745034|gb|EKQ93766.1| tRNA pseudouridine synthase D [Leptospira borgpetersenii str. UI
09149]
Length = 402
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 124/273 (45%), Gaps = 18/273 (6%)
Query: 14 NPFDSRGSE----NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDK 69
NP D R E + ++ GK+ F L+K +T +AL ISK + G+AG KD+
Sbjct: 12 NPEDFRVEEILRPGFIQKSGKWTIFRLHKSGWNTLDALLKISKESKVSISEIGYAGKKDR 71
Query: 70 RSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVD 129
+ ++Q ++ Q+ K+ ++ +L + ++ L GNRF + LR ++
Sbjct: 72 HANTSQYLSC--QKPLKIPKEFANVL--QLEKIGFSEKSLSPEANAGNRFVLILRNLLEK 127
Query: 130 SEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGE 188
+ ++ + +G+NGFINY+ QRF L L+G+ ++ +K+IL DP GE
Sbjct: 128 EIESVRNNFEKIGKNGFINYYDSQRFSRFHPEFRLPIFPYLKGDAETCLKLILTDPYAGE 187
Query: 189 RNEISKAREYYKETDDIDGTL---RKLPRHLVAERAILQCLK-KCPGN--YLQALKAIPR 242
+ + AR+ K+ G +K + + + + K P Y + P
Sbjct: 188 KKQ---ARDRKKKIQVAWGNWSQCKKWSNNKLENKIFFNLSREKNPTQKMYSTLILQFPE 244
Query: 243 TLRMMYVHSYQSFLWNHAASARVQKHGTEHVVV 275
+M + S QS +WN S + G V +
Sbjct: 245 EELLMLISSMQSLIWNEFVSELLISEGCSGVRI 277
>gi|419643591|ref|ZP_14175304.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
ATCC 33560]
gi|380620879|gb|EIB39728.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
ATCC 33560]
Length = 371
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 83/152 (54%), Gaps = 3/152 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L H+ K++ T EAL ++S+ G+ R FG+AG KDK+ + Q +++ K+ S L+
Sbjct: 46 GEHLILHINKKDLTTNEALKILSEASGVKIRDFGYAGLKDKQGSTFQYLSMPKKFESFLS 105
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ + I L F + + L +G L GN F I L+ V+ ++ + +L + GF N
Sbjct: 106 NFSHPKLKI-LETFIH-ENKLRIGHLKGNSFFIRLKKVLPSDALKLEQALMNLDKQGFAN 163
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM 180
YFG QRFG + G +LRG+ VKM
Sbjct: 164 YFGYQRFGKFG-DNYKEGFEILRGKKMKNVKM 194
>gi|419679790|ref|ZP_14208761.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
87459]
gi|380656576|gb|EIB72752.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
87459]
Length = 372
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 83/152 (54%), Gaps = 3/152 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L H+ K++ T EAL ++S+ G+ R FG+AG KDK+ + Q +++ K+ S L+
Sbjct: 46 GEHLILHINKKDLTTNEALKILSETSGVKIRDFGYAGLKDKQGSTFQYLSMPKKFESFLS 105
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ + I L F + + L +G L GN F I L+ V+ ++ + +L + GF N
Sbjct: 106 NFSHPKLKI-LEIFTH-ENKLRIGHLKGNTFFIRLKKVLPSDALKLEQALMNLDKQGFTN 163
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM 180
YFG QRFG + G +LRG+ VKM
Sbjct: 164 YFGYQRFGKFG-DNYKEGLEILRGKKMKNVKM 194
>gi|407942805|ref|YP_006858452.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
PT14]
gi|419650534|ref|ZP_14181751.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
2008-1025]
gi|419661814|ref|ZP_14192132.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
2008-831]
gi|419677280|ref|ZP_14206432.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
87330]
gi|380628286|gb|EIB46606.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
2008-1025]
gi|380639256|gb|EIB56752.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
2008-831]
gi|380654454|gb|EIB70809.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
87330]
gi|407906643|gb|AFU43472.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
PT14]
Length = 372
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 83/152 (54%), Gaps = 3/152 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L H+ K++ T EAL ++S+ G+ R FG+AG KDK+ + Q +++ K+ S L+
Sbjct: 46 GEHLILHINKKDLTTNEALKILSETSGVKIRDFGYAGLKDKQGSTFQYLSMPKKFESFLS 105
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ + I L F + + L +G L GN F I L+ V+ ++ + +L + GF N
Sbjct: 106 NFSHPKLKI-LEIFTH-ENKLRIGHLKGNTFFIRLKKVLPSDALKLEQALMNLDKQGFTN 163
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM 180
YFG QRFG + G +LRG+ VKM
Sbjct: 164 YFGYQRFGKFG-DNYKEGLEILRGKKMKNVKM 194
>gi|86152036|ref|ZP_01070249.1| tRNA pseudouridine synthase D, putative [Campylobacter jejuni
subsp. jejuni 260.94]
gi|315124894|ref|YP_004066898.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
gi|85841144|gb|EAQ58393.1| tRNA pseudouridine synthase D, putative [Campylobacter jejuni
subsp. jejuni 260.94]
gi|315018616|gb|ADT66709.1| tRNA pseudouridine synthase D, putative [Campylobacter jejuni
subsp. jejuni ICDCCJ07001]
Length = 372
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 83/152 (54%), Gaps = 3/152 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L H+ K++ T EAL ++S+ G+ R FG+AG KDK+ + Q +++ K+ S L+
Sbjct: 46 GEHLILHINKKDLTTNEALKILSETSGVKIRDFGYAGLKDKQGSTFQYLSMPKKFESFLS 105
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ + I L F + + L +G L GN F I L+ V+ ++ + +L + GF N
Sbjct: 106 NFSHPKLKI-LEIFTH-ENKLRIGHLKGNTFFIRLKKVLPSDALKLEQALMNLDKQGFTN 163
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM 180
YFG QRFG + G +LRG+ VKM
Sbjct: 164 YFGYQRFGKFG-DNYKEGLEILRGKKMKNVKM 194
>gi|150399950|ref|YP_001323717.1| tRNA pseudouridine synthase D [Methanococcus vannielii SB]
gi|150012653|gb|ABR55105.1| tRNA pseudouridine synthase D TruD [Methanococcus vannielii SB]
Length = 389
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/266 (22%), Positives = 124/266 (46%), Gaps = 18/266 (6%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G + + L K + A+ ISK I G+ G KD+ +++TQ +T+ +++
Sbjct: 24 GNYSLYRLKKLGIENLAAISYISKNFKIPLNDIGYCGLKDRHAITTQYITI-PNEYGRIS 82
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASAN-SLGRNGFI 147
+ L +G +++ L +G+L GN F I R +D D +K + N ++G
Sbjct: 83 LDEENLTLEYVGT---IEKPLKIGELFGNSFEIVARN--IDKNDFLKFAENIDTLKDGIP 137
Query: 148 NYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYY-KETDDI 205
NYF QRFGS + ++ ++SAVK++L + + E+ + + + K +
Sbjct: 138 NYFDEQRFGS-VFNGKFIIKEIINENYESAVKILLTNYTKSEKKSLKDLKRFIAKNWGNW 196
Query: 206 DGTLRKLPRHLVAERAILQCLK--KCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHA--- 260
D ++ + + + + +K K ++ ++ + L+ +++ +YQS++WN
Sbjct: 197 DACIKYIEKKQITSKMFKNMIKSLKYENDFKKSFYYVDNRLKELFISAYQSYIWNECLKE 256
Query: 261 -ASARVQKHGTEHV--VVGDLVFCKG 283
++QK +++ G +F K
Sbjct: 257 ILKEKLQKDDRKYIDYSCGTFLFYKN 282
>gi|116327017|ref|YP_796737.1| tRNA pseudouridine synthase D [Leptospira borgpetersenii serovar
Hardjo-bovis str. L550]
gi|116119761|gb|ABJ77804.1| tRNA pseudouridine synthase D [Leptospira borgpetersenii serovar
Hardjo-bovis str. L550]
Length = 402
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/271 (24%), Positives = 123/271 (45%), Gaps = 14/271 (5%)
Query: 14 NPFDSRGSE----NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDK 69
NP D R E + ++ GK+ F L+K +T +AL ISK + G+AG KD+
Sbjct: 12 NPEDFRVEEILRPGFIQKSGKWTIFRLHKSGWNTLDALLKISKESKVSISEIGYAGKKDR 71
Query: 70 RSVSTQRVTVFKQRASKLAALNKRLIGI-RLGDFCYVKEGLLLGQLLGNRFTITLRGVVV 128
+ ++Q ++ Q+ K+ ++ + R+G + ++ L GNRF + LR ++
Sbjct: 72 HANTSQYLSC--QKPLKIPKEFANVLQLERIG---FSEKSLSPEANAGNRFVLILRNLLE 126
Query: 129 DSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREG 187
+ ++ + +G+NGFINY+ QRF L L+G+ ++ +K+IL DP G
Sbjct: 127 KEIESVRNNFEKIGKNGFINYYDSQRFSRFHPEFRLPIFPYLKGDAETCLKLILTDPYAG 186
Query: 188 ERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLK-KCPGN--YLQALKAIPRTL 244
E+ + ++ + +K + + + + K P Y + P
Sbjct: 187 EKKQTRDRKKKIQVAWGNWSQCKKWSNNKLENKIFFNLSREKNPTQKTYSTLILQFPEEE 246
Query: 245 RMMYVHSYQSFLWNHAASARVQKHGTEHVVV 275
+M + S QS +WN S + G V +
Sbjct: 247 LLMLISSMQSLIWNEFVSELLVSEGCSGVRI 277
>gi|419637035|ref|ZP_14169217.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
LMG 9879]
gi|419670692|ref|ZP_14200377.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
1997-14]
gi|419672511|ref|ZP_14202003.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
51037]
gi|380616088|gb|EIB35306.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
LMG 9879]
gi|380650266|gb|EIB66908.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
1997-14]
gi|380655412|gb|EIB71727.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
51037]
Length = 372
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 83/152 (54%), Gaps = 3/152 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L H+ K++ T EAL ++S+ G+ R FG+AG KDK+ + Q +++ K+ S L+
Sbjct: 46 GEHLILHINKKDLTTNEALKILSETSGVKIRDFGYAGLKDKQGSTFQYLSMPKKFESFLS 105
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ + I L F + + L +G L GN F I L+ V+ ++ + +L + GF N
Sbjct: 106 NFSHPKLKI-LEIFTH-ENKLRIGHLKGNTFFIRLKKVLPSDALKLEQALMNLDKQGFTN 163
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM 180
YFG QRFG + G +LRG+ VKM
Sbjct: 164 YFGYQRFGKFG-DNYKEGLEILRGKKMKNVKM 194
>gi|421095533|ref|ZP_15556246.1| tRNA pseudouridine synthase D [Leptospira borgpetersenii str.
200801926]
gi|410362243|gb|EKP13283.1| tRNA pseudouridine synthase D [Leptospira borgpetersenii str.
200801926]
gi|456887562|gb|EMF98597.1| tRNA pseudouridine synthase D [Leptospira borgpetersenii str.
200701203]
Length = 402
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 124/273 (45%), Gaps = 18/273 (6%)
Query: 14 NPFDSRGSE----NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDK 69
NP D R E + ++ GK+ F L+K +T +AL ISK + G+AG KD+
Sbjct: 12 NPEDFRVEEILRPGFIQKSGKWTIFRLHKSGWNTLDALLKISKESKVSISEIGYAGKKDR 71
Query: 70 RSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVD 129
+ ++Q ++ Q+ K+ ++ +L + ++ L GNRF + LR ++
Sbjct: 72 HANTSQYLSC--QKPLKIPKEFANVL--QLEKIGFSEKSLSPEANAGNRFVLILRNLLEK 127
Query: 130 SEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGE 188
+ ++ + +G+NGFINY+ QRF L L+G+ ++ +K+IL DP GE
Sbjct: 128 EIESVRNNFEKIGKNGFINYYDSQRFSRFHPEFRLPIFPYLKGDAETCLKLILTDPYAGE 187
Query: 189 RNEISKAREYYKETDDIDGTL---RKLPRHLVAERAILQCLK-KCPGN--YLQALKAIPR 242
+ + AR+ K+ G +K + + + + K P Y + P
Sbjct: 188 KKQ---ARDRKKKIQVAWGNWSQCKKWSNNKLENKIFFNLSREKNPTQKMYSTLILQFPE 244
Query: 243 TLRMMYVHSYQSFLWNHAASARVQKHGTEHVVV 275
+M + S QS +WN S + G V +
Sbjct: 245 EELLMLISSMQSLIWNEFVSELLISEGCSGVRI 277
>gi|419633508|ref|ZP_14165941.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
LMG 23269]
gi|419646563|ref|ZP_14178027.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
53161]
gi|419695518|ref|ZP_14223409.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
LMG 23210]
gi|380612007|gb|EIB31546.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
LMG 23269]
gi|380623360|gb|EIB42069.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
53161]
gi|380678195|gb|EIB93052.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
LMG 23210]
Length = 372
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 83/152 (54%), Gaps = 3/152 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L H+ K++ T EAL ++S+ G+ R FG+AG KDK+ + Q +++ K+ S L+
Sbjct: 46 GEHLILHINKKDLTTNEALKILSETSGVKIRDFGYAGLKDKQGSTFQYLSMPKKFESFLS 105
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ + I L F + + L +G L GN F I L+ V+ ++ + +L + GF N
Sbjct: 106 NFSHPKLKI-LEIFIH-ENKLRIGHLKGNTFFIRLKKVLPSDALKLEQALMNLDKQGFTN 163
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM 180
YFG QRFG + G +LRG+ VKM
Sbjct: 164 YFGYQRFGKFG-DNYKEGLEILRGKKMKNVKM 194
>gi|419682320|ref|ZP_14211055.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
1213]
gi|380661610|gb|EIB77495.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
1213]
Length = 372
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 83/152 (54%), Gaps = 3/152 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L H+ K++ T EAL ++S+ G+ R FG+AG KDK+ + Q +++ K+ S L+
Sbjct: 46 GEHLILHINKKDLTTNEALKILSEASGVKIRDFGYAGLKDKQGSTFQYLSMPKKFESFLS 105
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ + I L F + + L +G L GN F I L+ V+ ++ + +L + GF N
Sbjct: 106 NFSHPKLKI-LEIFTH-ENKLRIGHLKGNSFFIRLKKVMPSDALKLEQALMNLDKQGFAN 163
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM 180
YFG QRFG + G +LRG+ VKM
Sbjct: 164 YFGYQRFGKFG-DNYKEGLEILRGKKMKNVKM 194
>gi|154174417|ref|YP_001408379.1| tRNA pseudouridine synthase D [Campylobacter curvus 525.92]
gi|112802616|gb|EAT99960.1| tRNA pseudouridine synthase D [Campylobacter curvus 525.92]
Length = 374
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 71/128 (55%), Gaps = 2/128 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L + K++ TQEAL +S G+ R FG+AG KDK+ ++TQ V++ ++ + LA
Sbjct: 43 GEHLIIEIAKKDMTTQEALRALSDATGVKLREFGYAGLKDKQGMTTQFVSIPRKFEANLA 102
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ I I L + + L +G L N F I L+ VV ++ + +L +GF N
Sbjct: 103 NFSYEKIKI-LSTVAH-ENKLRVGHLRANNFFIRLKKVVPSEAAKLENAIKTLDTSGFAN 160
Query: 149 YFGLQRFG 156
YFG QRFG
Sbjct: 161 YFGYQRFG 168
>gi|115504139|ref|XP_001218862.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|83642344|emb|CAJ16145.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 1523
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 83/320 (25%), Positives = 128/320 (40%), Gaps = 89/320 (27%)
Query: 109 LLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGAT 168
L +G G + + LR + ++K + SL ++GFINYFG QRF S + G
Sbjct: 920 LRMGDNDGYDYRVKLRRIPQSHFPLVKPAMVSLQKHGFINYFGPQRFSSYTRYNMHPGLH 979
Query: 169 LLRGEWKSAVKMILD--------PREGERNEISKAREYYKE-----TDDID---GTLRKL 212
LL+GE+ +A +I+ E RN + + Y + DID G R +
Sbjct: 980 LLKGEFHAAASIIVQQFYMDSDLAAEKRRNGHTIEKMYSSKGAGFRLPDIDRSFGGRRSV 1039
Query: 213 PRHLVAERAIL--------------------------------------QCLKKCPGNYL 234
+ A +++L L C +L
Sbjct: 1040 TENGSALQSVLSNALQASSLLGLNENSAEMESYSSSPKDQQIMNVTNGASVLDPCGEAFL 1099
Query: 235 QALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVN 294
+ + P+ M+ VH + +FLWN + R+Q++GT ++ GDLV +N
Sbjct: 1100 RVVG--PKACSML-VHEFLAFLWNDIVNQRLQRYGTFAILPGDLVR------------LN 1144
Query: 295 PEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRV 354
P S H +E GR V + I GKYT DVVLP+PG+ V
Sbjct: 1145 PL----------ASPHSNEF-------GR---VVYASKNSIEKGKYTCYDVVLPVPGAGV 1184
Query: 355 IYPMNDVAEVYHHLAEKDGI 374
P N A++Y ++ GI
Sbjct: 1185 ELPDNHTADLYVVTLKRMGI 1204
>gi|418736422|ref|ZP_13292824.1| tRNA pseudouridine synthase D [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
gi|410747953|gb|EKR00855.1| tRNA pseudouridine synthase D [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
Length = 402
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 124/273 (45%), Gaps = 18/273 (6%)
Query: 14 NPFDSRGSE----NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDK 69
NP D R E + ++ GK+ F L+K +T +AL ISK + G+AG KD+
Sbjct: 12 NPEDFRVEEILRPGFIQKSGKWTIFRLHKSGWNTLDALLKISKESKVSISEIGYAGKKDR 71
Query: 70 RSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVD 129
+ ++Q ++ Q+ K+ ++ +L + ++ L GNRF + LR ++
Sbjct: 72 HANTSQYLSC--QKPLKIPKEFANVL--QLEKIGFSEKSLSPEANAGNRFVLILRNLLEK 127
Query: 130 SEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGE 188
+ ++ + +G+NGFINY+ QRF L L+G+ ++ +K+IL DP GE
Sbjct: 128 EIESVRNNFEKIGKNGFINYYDSQRFSRFHPEFRLPIFPYLKGDAETCLKLILTDPYAGE 187
Query: 189 RNEISKAREYYKETDDIDGTL---RKLPRHLVAERAILQCLK-KCPGN--YLQALKAIPR 242
+ + AR+ K+ G +K + + + + K P Y + P
Sbjct: 188 KKQ---ARDRKKKIQVAWGNWSQCKKWSNNKLENKIFFNLSREKKPTQKMYSTLILQFPE 244
Query: 243 TLRMMYVHSYQSFLWNHAASARVQKHGTEHVVV 275
+M + S QS +WN S + G V +
Sbjct: 245 EELLMLISSMQSLIWNEFVSELLISEGCSGVRI 277
>gi|328950666|ref|YP_004368001.1| tRNA pseudouridine synthase D [Marinithermus hydrothermalis DSM
14884]
gi|328450990|gb|AEB11891.1| tRNA pseudouridine synthase D [Marinithermus hydrothermalis DSM
14884]
Length = 353
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 68/135 (50%), Gaps = 2/135 (1%)
Query: 25 PEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRA 84
P G+ L HL KE T++ I +G+ + G AG KDK +++ Q ++ K A
Sbjct: 43 PSGQGEHLFIHLEKEGLTTRQVFEYIRDEMGVPEKLIGVAGLKDKHALTRQWFSIPKSHA 102
Query: 85 SKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRN 144
L L +RL G+R+ + Y + L +G L GNRF I +R E +A +L
Sbjct: 103 PHLPRL-ERLPGVRVLEAAYHRNKLGVGHLKGNRFAILVRDPEGPPERA-RAILEALAAK 160
Query: 145 GFINYFGLQRFGSGS 159
G NY+G QRFG G
Sbjct: 161 GVPNYYGPQRFGIGG 175
>gi|419640319|ref|ZP_14172254.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
LMG 23357]
gi|380619569|gb|EIB38622.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
LMG 23357]
Length = 372
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 83/152 (54%), Gaps = 3/152 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L H+ K++ T EAL ++S+ G+ R FG+AG KDK+ + Q +++ K+ S L+
Sbjct: 46 GEHLILHINKKDLTTNEALKILSETSGVKIRDFGYAGLKDKQGSTFQYLSMPKKFESFLS 105
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ + I L F + + L +G L GN F I L+ V+ ++ + +L + GF N
Sbjct: 106 NFSHPKLKI-LEIFTH-ENKLRIGHLKGNTFFIRLKKVLPSDALKLEQALMNLDKQGFAN 163
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM 180
YFG QRFG + G +LRG+ VKM
Sbjct: 164 YFGYQRFGKFG-DNYKEGLEILRGKKMKNVKM 194
>gi|419629199|ref|ZP_14161932.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
60004]
gi|380608293|gb|EIB28104.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
60004]
Length = 372
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 83/152 (54%), Gaps = 3/152 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L H+ K++ T EAL ++S+ G+ R FG+AG KDK+ + Q +++ K+ S L+
Sbjct: 46 GEHLILHINKKDLTTNEALKILSETSGVKIRDFGYAGLKDKQGSTFQYLSMPKKFESFLS 105
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ + I L F + + L +G L GN F I L+ V+ ++ + +L + GF N
Sbjct: 106 NFSHPKLKI-LEIFTH-ENKLRIGHLKGNTFFIRLKKVLPSDALKLEQALMNLDKQGFTN 163
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM 180
YFG QRFG + G +LRG+ VKM
Sbjct: 164 YFGYQRFGKFG-DNYKEGLEILRGKKMKNVKM 194
>gi|157415682|ref|YP_001482938.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
81116]
gi|384442040|ref|YP_005658343.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
M1]
gi|415747679|ref|ZP_11476165.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
327]
gi|189036616|sp|A8FNC4.1|TRUD_CAMJ8 RecName: Full=tRNA pseudouridine synthase D; AltName: Full=tRNA
pseudouridine(13) synthase; AltName: Full=tRNA
pseudouridylate synthase D; AltName: Full=tRNA-uridine
isomerase D
gi|157386646|gb|ABV52961.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
81116]
gi|307748323|gb|ADN91593.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
M1]
gi|315930965|gb|EFV09940.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
327]
Length = 372
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 83/152 (54%), Gaps = 3/152 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L H+ K++ T EAL ++S+ G+ R FG+AG KDK+ + Q +++ K+ S L+
Sbjct: 46 GEHLILHINKKDLTTNEALKILSETSGVKIRDFGYAGLKDKQGSTFQYLSMPKKFESFLS 105
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ + I L F + + L +G L GN F I L+ V+ ++ + +L + GF N
Sbjct: 106 NFSHPKLKI-LEIFTH-ENKLRIGHLKGNTFFIRLKKVLPSDALKLEQALMNLDKQGFAN 163
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM 180
YFG QRFG + G +LRG+ VKM
Sbjct: 164 YFGYQRFGKFG-DNYKEGFEILRGKKMKNVKM 194
>gi|86149323|ref|ZP_01067554.1| tRNA pseudouridine synthase D, putative [Campylobacter jejuni
subsp. jejuni CF93-6]
gi|88596349|ref|ZP_01099586.1| tRNA pseudouridine synthase D, putative [Campylobacter jejuni
subsp. jejuni 84-25]
gi|218563060|ref|YP_002344839.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
NCTC 11168 = ATCC 700819]
gi|384448684|ref|YP_005656735.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
IA3902]
gi|403056183|ref|YP_006633588.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
NCTC 11168-BN148]
gi|415731805|ref|ZP_11473613.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
DFVF1099]
gi|419675293|ref|ZP_14204564.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
110-21]
gi|37089932|sp|Q9PMK3.1|TRUD_CAMJE RecName: Full=tRNA pseudouridine synthase D; AltName: Full=tRNA
pseudouridine(13) synthase; AltName: Full=tRNA
pseudouridylate synthase D; AltName: Full=tRNA-uridine
isomerase D
gi|85840105|gb|EAQ57363.1| tRNA pseudouridine synthase D, putative [Campylobacter jejuni
subsp. jejuni CF93-6]
gi|88191190|gb|EAQ95162.1| tRNA pseudouridine synthase D, putative [Campylobacter jejuni
subsp. jejuni 84-25]
gi|112360766|emb|CAL35565.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
NCTC 11168 = ATCC 700819]
gi|284926665|gb|ADC29017.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
IA3902]
gi|315927402|gb|EFV06740.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
DFVF1099]
gi|380651924|gb|EIB68441.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
110-21]
gi|401781835|emb|CCK67542.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
NCTC 11168-BN148]
Length = 372
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 83/152 (54%), Gaps = 3/152 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L H+ K++ T EAL ++S+ G+ R FG+AG KDK+ + Q +++ K+ S L+
Sbjct: 46 GEHLILHINKKDLTTNEALKILSEASGVKIRDFGYAGLKDKQGSTFQYLSMPKKFESFLS 105
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ + I L F + + L +G L GN F I L+ V+ ++ + +L + GF N
Sbjct: 106 NFSHPKLKI-LEIFTH-ENKLRIGHLKGNSFFIRLKKVLPSDALKLEQALMNLDKQGFAN 163
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM 180
YFG QRFG + G +LRG+ VKM
Sbjct: 164 YFGYQRFGKFG-DNYKEGLEILRGKKMKNVKM 194
>gi|261326066|emb|CBH08892.1| T. brucei spp.-specific protein [Trypanosoma brucei gambiense DAL972]
Length = 1523
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 83/320 (25%), Positives = 128/320 (40%), Gaps = 89/320 (27%)
Query: 109 LLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGAT 168
L +G G + + LR + ++K + SL ++GFINYFG QRF S + G
Sbjct: 920 LRMGDNDGYDYRVKLRRIPQSHFPLVKPAMVSLQKHGFINYFGPQRFSSYTRYNMHPGLH 979
Query: 169 LLRGEWKSAVKMILD--------PREGERNEISKAREYYKE-----TDDID---GTLRKL 212
LL+GE+ +A +I+ E RN + + Y + DID G R +
Sbjct: 980 LLKGEFHAAASIIVQQFYMDSDLAAEKRRNGHTIEKMYSSKGAGFRLPDIDRSFGGRRSV 1039
Query: 213 PRHLVAERAIL--------------------------------------QCLKKCPGNYL 234
+ A +++L L C +L
Sbjct: 1040 TENGSALQSVLSNALQASSLLGLNENSAEMESYSSSPKDQQIMNVTNGASVLDPCGEAFL 1099
Query: 235 QALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVN 294
+ + P+ M+ VH + +FLWN + R+Q++GT ++ GDLV +N
Sbjct: 1100 RVVG--PKACSML-VHEFLAFLWNDIVNQRLQRYGTFAILPGDLVR------------LN 1144
Query: 295 PEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRV 354
P S H +E GR V + I GKYT DVVLP+PG+ V
Sbjct: 1145 PL----------ASPHSNEF-------GR---VVYASKNSIEKGKYTCYDVVLPVPGAGV 1184
Query: 355 IYPMNDVAEVYHHLAEKDGI 374
P N A++Y ++ GI
Sbjct: 1185 ELPDNHTADLYVVTLKRMGI 1204
>gi|257458745|ref|ZP_05623868.1| tRNA pseudouridine synthase D [Campylobacter gracilis RM3268]
gi|257443733|gb|EEV18853.1| tRNA pseudouridine synthase D [Campylobacter gracilis RM3268]
Length = 400
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 66/121 (54%), Gaps = 2/121 (1%)
Query: 36 LYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLI 95
L K+ T EAL ++S+ G R FG+AG KDK+ ++TQ V++ + L +
Sbjct: 74 LQKKGIGTHEALRILSERTGAKMREFGYAGLKDKQGLTTQHVSMPAKFEPALGGFSHE-- 131
Query: 96 GIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQRF 155
+++ K L +G L GN F I L+ V+ + A+ ++LGR GF NYFG QRF
Sbjct: 132 SLKILSVQRHKNKLKIGHLKGNDFFIRLKKVLPPDAVKLAAALDTLGREGFANYFGYQRF 191
Query: 156 G 156
G
Sbjct: 192 G 192
>gi|221485749|gb|EEE24019.1| tRNA pseudouridine synthase D, putative [Toxoplasma gondii GT1]
Length = 1461
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 87/181 (48%), Gaps = 18/181 (9%)
Query: 234 LQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDD-----TEK 288
L+A+++IPR R++YV +Y S+LWN A+ R + +G VVGDLV K + T
Sbjct: 1202 LKAVRSIPRLQRLIYVKAYASYLWNLCATERARVYGLCRPVVGDLVLEKAGNETMQSTAA 1261
Query: 289 ELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVVLP 348
+ F +E + +A S R L++T + ++I DVVLP
Sbjct: 1262 SFSSSSLLFPFERTGEARPDSQ-----RVRSDSQRVRLLRT----EEECQSFSIADVVLP 1312
Query: 349 LPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWE 408
L G+ +++P N V E +L ++ L E L+ +E + +YR + P DF
Sbjct: 1313 LIGAGMVFPENKVGEFLRNLMNEE--FLCERLYRREEELF--LDASYRPLLAFPQDFSCT 1368
Query: 409 L 409
L
Sbjct: 1369 L 1369
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 26/38 (68%)
Query: 145 GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL 182
GFINYFG QRFG+G+ PTH +G LL ++ +IL
Sbjct: 850 GFINYFGPQRFGTGARPTHHIGRALLHRQFARVCNLIL 887
Score = 45.1 bits (105), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 34/48 (70%)
Query: 32 LRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTV 79
+RF L K N++T EAL +++++ G+ + F FAG KD+R+V++Q +
Sbjct: 508 VRFILTKHNRETPEALEVLARVTGVDIKRFSFAGMKDRRAVTSQWIAC 555
>gi|255322665|ref|ZP_05363809.1| tRNA pseudouridine synthase D [Campylobacter showae RM3277]
gi|255300226|gb|EET79499.1| tRNA pseudouridine synthase D [Campylobacter showae RM3277]
Length = 374
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 73/128 (57%), Gaps = 2/128 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L + K++ TQEAL +S++ G+ R FG+AG KDK+ ++TQ +++ ++ + LA
Sbjct: 43 GEHLIIEICKKDMTTQEALQALSEISGVKMRDFGYAGLKDKQGMTTQFISMPRKFEAMLA 102
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ +++ L +G L GN F I L+ V+ ++ + ++G +G+ N
Sbjct: 103 NFSHE--KMKILSLAAHDNKLRIGHLKGNSFFIRLKKVMPSEAAKLEQAVRNVGESGYPN 160
Query: 149 YFGLQRFG 156
YFG QRFG
Sbjct: 161 YFGYQRFG 168
>gi|153004244|ref|YP_001378569.1| tRNA pseudouridine synthase D TruD [Anaeromyxobacter sp. Fw109-5]
gi|152027817|gb|ABS25585.1| tRNA pseudouridine synthase D TruD [Anaeromyxobacter sp. Fw109-5]
Length = 455
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 124/253 (49%), Gaps = 19/253 (7%)
Query: 14 NPFDSRGSENW---PEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKR 70
P D + +E+W + G + + K+ T EA+ I I + + G KDK+
Sbjct: 6 RPEDFQVTESWRFEEDPRGAHFVYLMDKQKLSTFEAVERICAGFKIPRAAVSYCGLKDKQ 65
Query: 71 SVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDS 130
+TQ + + + R +L + +RL E L NRF +T+R + D
Sbjct: 66 GRTTQLIAI-QGREIELQDPD-----LRLKPLGRAAEPLSAANTTSNRFAVTVRDLGEDD 119
Query: 131 EDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGER 189
+ AS + R G +NYF QRFGS + L+RG+++ A++ IL P + ++
Sbjct: 120 VARLTASIAEVRRLGVVNYFDSQRFGSLKHGQGFIVKDLMRGDFEVALRNILARPSDLDQ 179
Query: 190 NEISKAREYYKE-TDDIDGTLRKLPRHLVAER--AILQCLKKCPGNYLQA-LKAIPRTLR 245
+ ++ + ++KE + D R+ P + AER A+++ LK P ++ A L+ PR R
Sbjct: 180 SGDARVKAFWKEHWGEWD---RRNP-YPGAERYQAVVKWLKAHPTDHRGAILRTEPR-WR 234
Query: 246 MMYVHSYQSFLWN 258
+ V +YQS+LWN
Sbjct: 235 ALQVFAYQSWLWN 247
>gi|254457963|ref|ZP_05071390.1| tRNA pseudouridine synthase D [Sulfurimonas gotlandica GD1]
gi|373868993|ref|ZP_09605391.1| tRNA pseudouridine synthase D [Sulfurimonas gotlandica GD1]
gi|207085356|gb|EDZ62641.1| tRNA pseudouridine synthase D [Sulfurimonas gotlandica GD1]
gi|372471094|gb|EHP31298.1| tRNA pseudouridine synthase D [Sulfurimonas gotlandica GD1]
Length = 357
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 74/145 (51%), Gaps = 3/145 (2%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L + K++ T E +G+ ++ LGI + G+AG KDK +++ Q +++ K+ L
Sbjct: 37 GEHLILFVRKKSLTTPELVGIFARYLGIQNKEIGYAGLKDKHAMTKQYISLHKKHEEMLE 96
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
I++ Y + +G L GNRF I ++ V S I + + + G N
Sbjct: 97 NFTHE--NIKIISKTYHNNKIRIGHLKGNRFYIKIKKVNPTSAAKIDEALKKISKFGMPN 154
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGE 173
+FG QRFG+ H++G + +GE
Sbjct: 155 FFGYQRFGNDG-DNHILGEKIAKGE 178
>gi|374632943|ref|ZP_09705310.1| hypothetical protein MetMK1DRAFT_00020540 [Metallosphaera
yellowstonensis MK1]
gi|373524427|gb|EHP69304.1| hypothetical protein MetMK1DRAFT_00020540 [Metallosphaera
yellowstonensis MK1]
Length = 362
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 113/238 (47%), Gaps = 27/238 (11%)
Query: 33 RFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALN- 91
+ +Y K + +I K+ IL G KD +V++Q + K+ + N
Sbjct: 55 KLAVYLLRKIGLDFFSMIRKLTSILGERPSHLGIKDANAVTSQLIYTRKKSLDEYQEDNF 114
Query: 92 -KRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFI-NY 149
R +G G + GN F I L G +++ ++ ++ R G + Y
Sbjct: 115 SLRFLGYTQGKLNHT----------GNMFEIDLIGA---NQEELRKRVETIVREGVLPAY 161
Query: 150 FGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILD-PREGERNEISKAREYYKETDDIDGT 208
G QRFG+ TH+VG L++GEW +AV IL P E I + R ++ D+ +G
Sbjct: 162 IGYQRFGTRRPTTHVVGKMLVKGEWCNAVYFILGFPYIWENENIRRFRAHF--MDEGNG- 218
Query: 209 LRKLPRHL-VAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARV 265
P H+ + ER +L L+K G+ ++ALKA L+ +V SYQS+L+N S ++
Sbjct: 219 ----PCHIPMQERRVLLELRKS-GSCVRALKASLVPLK-FFVESYQSYLFNRLLSKKL 270
>gi|359684173|ref|ZP_09254174.1| tRNA pseudouridine synthase D [Leptospira santarosai str.
2000030832]
Length = 428
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 124/290 (42%), Gaps = 24/290 (8%)
Query: 14 NPFDSRGSE----NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDK 69
NP D R E ++ ++ GK+ F L+K +T +AL ISK + G+AG KD+
Sbjct: 38 NPGDFRVEEILRPDFIQKSGKWTIFRLHKSGCNTLDALLKISKESKVSISEIGYAGKKDR 97
Query: 70 RSVSTQRVTVFKQRASKLAALNKRLIGI-RLGDFCYVKEGLLLGQLLGNRFTITLRGVVV 128
+ ++Q ++ K + K L + +L + L GNRF + LR ++
Sbjct: 98 HATTSQYLS-----CQKPLKIPKELGNVLQLEKIGFSNRPLSPEANAGNRFVLILRNLLE 152
Query: 129 DSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREG 187
+ ++ + + NGFINY+ QRF L + L+G+ ++ +K+IL DP G
Sbjct: 153 REIESVRNNFEKICNNGFINYYDSQRFSRFHPEFKLPILSYLKGDAETCLKLILTDPYAG 212
Query: 188 ERNEISKAREYYKETDDIDGTL---RKLPRHLVAERAILQCLKK---CPGNYLQALKAIP 241
E+ + AR+ K + G +K + R ++ Y + P
Sbjct: 213 EKKQ---ARDRKKNIQAVWGNWSQCKKWSDSKLENRIFFDLSRERNPTQKTYSDLIFQFP 269
Query: 242 RTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVV----GDLVFCKGDDTE 287
+M V S QS +WN S + G V + G L F TE
Sbjct: 270 EEELLMLVSSMQSLIWNEFVSELLISEGYSGVRIKTKTGFLFFPGESSTE 319
>gi|441146464|ref|ZP_20964150.1| hypothetical protein SRIM_09036 [Streptomyces rimosus subsp.
rimosus ATCC 10970]
gi|440620585|gb|ELQ83612.1| hypothetical protein SRIM_09036 [Streptomyces rimosus subsp.
rimosus ATCC 10970]
Length = 348
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 76/154 (49%), Gaps = 16/154 (10%)
Query: 36 LYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNK--- 92
L+K T EA+ L++ LG+ R G+AG KD+ ++ Q ++V + + L L
Sbjct: 37 LHKRGYTTMEAVRLVADRLGVPSRDVGYAGLKDEDGITEQLLSVPLKVPAALGELTSAGL 96
Query: 93 -------RLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNG 145
RL+ L + Y +E L +G+L GN F + LRG +D + +
Sbjct: 97 VEERGPDRLLS--LSHYGYGREPLRVGRLNGNGFRVVLRG--LDETTAARLADRHRMNLL 152
Query: 146 FINYFGLQRFGSGSVP--THLVGATLLRGEWKSA 177
F+NY+ QRFG P THLVG LL+ +W A
Sbjct: 153 FVNYYDTQRFGVPGGPKRTHLVGEALLKEDWALA 186
>gi|337287695|ref|YP_004627167.1| tRNA pseudouridine synthase D TruD [Thermodesulfobacterium sp.
OPB45]
gi|334901433|gb|AEH22239.1| tRNA pseudouridine synthase D TruD [Thermodesulfobacterium
geofontis OPF15]
Length = 389
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 103/437 (23%), Positives = 184/437 (42%), Gaps = 70/437 (16%)
Query: 7 KRKERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGT 66
K KE+ ++ S ++ +PE G++ + L K N T +ALG I+K L I S + G
Sbjct: 2 KIKEKLEDFVVSEIADIYPEGKGEYSLYMLKKLNISTWDALGKIAKKLRISMDSINYGGL 61
Query: 67 KDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGV 126
KDK++++ Q +T+ + K K I LG + + L+GN+F I +R
Sbjct: 62 KDKKAIAHQFITI--KGGPKRDIKEKEFELIYLGK---TTKPMSKDLLIGNKFEIIVRDF 116
Query: 127 VVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPRE 186
++ E + + G NYF QRFGS ++ G ++ A+ +++ E
Sbjct: 117 QIE-EKKFDREVELVRKFGLSNYFNEQRFGSIKSSKEFAAKEIILGNYERALYLMMA--E 173
Query: 187 GERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRM 246
G +I K R++ CLKK GN+ + L+ ++
Sbjct: 174 GSAVDIEKTRKFR------------------------DCLKKHWGNFEKCLEFA----KV 205
Query: 247 MYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDAD 306
+ + +FL H S R K ++V + +F G+ + L N+
Sbjct: 206 NWEKNLLNFLITHKPSKRTFKRAL-NLVDKEYLFFLGNAYQSYLW-----------NEVL 253
Query: 307 DSSHLD-EVP--ETDHPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMN---- 359
L E+P E + G+ K V A + ++ LPLP ++ +
Sbjct: 254 KEVILRLEIPYFEISYLLGKLFFYKEVPADKWE----ILKNLKLPLPSPKLKFKEKFENL 309
Query: 360 DVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRR---VFQKPMDFEWELLTYIDGN 416
++ E+Y+ + +++G++ ++ N++ F + Y R +F P EWE L D
Sbjct: 310 NLEEIYNEICKREGLD---NIKNLRSFIKGLIFKTYPRPAVIF--PEKLEWEKL---DNT 361
Query: 417 KPLAETDLDKIAKAKLV 433
+ L+K A A LV
Sbjct: 362 TIKIKFTLEKGAYATLV 378
>gi|419541647|ref|ZP_14080788.1| tRNA pseudouridine synthase D [Campylobacter coli 2548]
gi|380524606|gb|EIA50207.1| tRNA pseudouridine synthase D [Campylobacter coli 2548]
Length = 372
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 83/152 (54%), Gaps = 3/152 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L H+ K++ T EAL ++S+ G+ R FG+AG KDK+ + Q +++ K+ S L+
Sbjct: 46 GEHLILHINKKDLTTNEALKILSETSGVKIRDFGYAGLKDKQGSTFQYLSMPKKFESFLS 105
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ + I L F + + L +G L GN F I L+ V+ ++ + +L + GF N
Sbjct: 106 NFSHPKLKI-LEIFTH-ENKLRIGHLKGNTFFIRLKKVLPSDALKLEQALINLDKQGFAN 163
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM 180
YFG QRFG + G +LRG+ VKM
Sbjct: 164 YFGYQRFGKFG-DNYKEGLEILRGKKMKNVKM 194
>gi|419635552|ref|ZP_14167855.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
55037]
gi|380612575|gb|EIB32099.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
55037]
Length = 372
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 83/152 (54%), Gaps = 3/152 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L H+ K++ T EAL ++S+ G+ R FG+AG KDK+ + Q +++ K+ S L+
Sbjct: 46 GEHLILHINKKDLTTNEALKILSEASGVKIRDFGYAGLKDKQGSTFQYLSMPKKFESFLS 105
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ + I L F + + L +G L GN F I L+ V+ ++ + +L + GF N
Sbjct: 106 NFSHPKLKI-LEIFTH-ENKLRIGHLKGNSFFIRLKKVLPSDALKLEQALMNLDKQGFAN 163
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM 180
YFG QRFG + G +LRG+ VKM
Sbjct: 164 YFGYQRFGKFG-DNYKEGLEILRGKKMKNVKM 194
>gi|456985478|gb|EMG21288.1| tRNA pseudouridine synthase D-like protein, partial [Leptospira
interrogans serovar Copenhageni str. LT2050]
Length = 234
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 102/207 (49%), Gaps = 12/207 (5%)
Query: 26 EQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRAS 85
++ GK++ F L K +T +AL ISK + G+AG KD+ + ++Q ++
Sbjct: 34 QKTGKWMIFRLQKSGWNTLDALLRISKESKVSIFEIGYAGKKDRHASTSQYIS-----CQ 88
Query: 86 KLAALNKRLIG-IRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRN 144
K + K L I+L + K+ L +GNRF + LR ++ + I+ + + +N
Sbjct: 89 KPLRVPKELTKVIQLDKIGFSKKSLSTELNVGNRFQLVLRNLLEKEIESIRNNFEKITKN 148
Query: 145 GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYYKETD 203
GFINY+ QRF L +G+ ++ +K+IL DP GE+N+ AR+ K
Sbjct: 149 GFINYYDSQRFSRFHSEFRLPILPFFKGDAETCLKLILTDPFPGEKNQ---ARDRKKILY 205
Query: 204 DIDGTLRKLPRHLVA--ERAILQCLKK 228
D+ G + + + E+ I LKK
Sbjct: 206 DLWGNWSQCEKWSKSKLEKNIFSNLKK 232
>gi|313680073|ref|YP_004057812.1| tRNA pseudouridine synthase d trud [Oceanithermus profundus DSM
14977]
gi|313152788|gb|ADR36639.1| tRNA pseudouridine synthase D TruD [Oceanithermus profundus DSM
14977]
Length = 358
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 72/135 (53%), Gaps = 1/135 (0%)
Query: 25 PEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRA 84
P G+ L L K T++ +S+ L I ++ G AG KDK +V+ Q +++ + A
Sbjct: 44 PSGKGEHLYVFLEKRGLTTRQVFDHLSQELRIPEKAIGVAGLKDKHAVTRQWISLPARYA 103
Query: 85 SKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRN 144
+L L + L G+R+ + L +G L GNRF I +R VV ++ + +A + L R
Sbjct: 104 DRLPQLEE-LPGVRILETGLHTNKLGVGHLRGNRFEIVIRDVVPEALHLARAVLSELERA 162
Query: 145 GFINYFGLQRFGSGS 159
G NY+G QRFG G
Sbjct: 163 GVPNYYGPQRFGLGG 177
>gi|384171775|ref|YP_005553152.1| tRNA pseudouridine synthase D [Arcobacter sp. L]
gi|345471385|dbj|BAK72835.1| tRNA pseudouridine synthase D [Arcobacter sp. L]
Length = 354
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 100/238 (42%), Gaps = 66/238 (27%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L + K++ T +A+ +++ LG R FG+AG KDK +++ Q +++ ++ +L
Sbjct: 38 GEHLVLKIRKKDLATWDAIEILANYLGCSTREFGYAGLKDKNAMTIQSISIHRKFEEQLK 97
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ I++ + Y + +G L GN+F I L+ V + + I+ + + G N
Sbjct: 98 SFQHE--NIKILETTYHNNKIKVGHLKGNKFFIRLKRVGLVEKRKIEEAFGQIATYGIPN 155
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDDIDGT 208
YFG QRFG EG+ Y K D IDG
Sbjct: 156 YFGFQRFGI----------------------------EGDN--------YKKGKDIIDGK 179
Query: 209 LRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQ 266
L K R L+ MY+++YQS+L+N+ S R++
Sbjct: 180 L----------------------------KEKRRNLKQMYINAYQSYLFNNWLSKRIE 209
>gi|419688456|ref|ZP_14216779.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
1854]
gi|380665480|gb|EIB81048.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
1854]
Length = 372
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 82/152 (53%), Gaps = 3/152 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L H+ K++ T EAL ++S G+ R FG+AG KDK+ + Q +++ K+ S L+
Sbjct: 46 GEHLILHINKKDLTTNEALKILSATSGVKIRDFGYAGLKDKQGSTFQYLSMPKKFESFLS 105
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ + I L F + + L +G L GN F I L+ V+ ++ + +L + GF N
Sbjct: 106 NFSHPKLKI-LEIFTH-ENKLRIGHLKGNTFFIRLKKVLPSDALKLEQALMNLDKQGFAN 163
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM 180
YFG QRFG + G +LRG+ VKM
Sbjct: 164 YFGYQRFGKFG-DNYKEGLEILRGKKMKNVKM 194
>gi|205356110|ref|ZP_03222877.1| hypothetical protein Cj8421_1500 [Campylobacter jejuni subsp.
jejuni CG8421]
gi|205345953|gb|EDZ32589.1| hypothetical protein Cj8421_1500 [Campylobacter jejuni subsp.
jejuni CG8421]
Length = 372
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 82/152 (53%), Gaps = 3/152 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L H+ K++ T EAL ++S G+ R FG+AG KDK+ + Q +++ K+ S L+
Sbjct: 46 GEHLILHINKKDLTTNEALKILSATSGVKIRDFGYAGLKDKQGSTFQYLSMPKKFESFLS 105
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ + I L F + + L +G L GN F I L+ V+ ++ + +L + GF N
Sbjct: 106 NFSHPKLKI-LEIFTH-ENKLRIGHLKGNTFFIRLKKVLPSDALKLEQALMNLDKQGFAN 163
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM 180
YFG QRFG + G +LRG+ VKM
Sbjct: 164 YFGYQRFGKFG-DNYKEGLEILRGKKMKNVKM 194
>gi|406835669|ref|ZP_11095263.1| tRNA pseudouridine synthase D TruD [Schlesneria paludicola DSM
18645]
Length = 387
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 83/360 (23%), Positives = 142/360 (39%), Gaps = 69/360 (19%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+F + L K + T EA+ IS+ I R+ G+ G KDK + + Q +T+ QR +
Sbjct: 23 GQFAVYLLIKRSLGTPEAVTAISERWNIPRRAIGYGGLKDKHATTRQWITI--QRGPRR- 79
Query: 89 ALNKRLIGIRLGDFCYVKEGLL---LG--QLLGNRFTITLRGVVVDSEDVIKASANSLGR 143
+R F +G G + NRF I LR + + I + R
Sbjct: 80 -------DLREESFSLEYQGQASRHFGPHDISANRFYIVLRNLTEAAAQKIVGERELVSR 132
Query: 144 NGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM-ILDP----REGERNEISKAREY 198
G NY+ QRFGS + +G ++ A+ + I +P R +R+E R Y
Sbjct: 133 FGVPNYYDDQRFGSLGESGEFIAKPWCQGNYERALWLAIAEPNTHDRPRDRDEKEIVRRY 192
Query: 199 YKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWN 258
+ E L K R R+++ L P + A + LR +++ ++QS LWN
Sbjct: 193 WGEWQSCKSLLDKSSR-----RSVITYLVDHPTRFRDAFALQRQDLRSIWLAAFQSDLWN 247
Query: 259 HAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETD 318
+ +T +E+ V P+ + ++ DE+ + +
Sbjct: 248 RCLA----------------------ETLREI--VQPDRLWSVPLATSNAPFFDELADDE 283
Query: 319 HPDGRHNLVKTVTAADINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTE 378
TA + D LPLP +R+ + ++Y +A + G+ L E
Sbjct: 284 ------------TA--------MLSDCTLPLPSARLHLEEGRLLDLYERVAGEQGLALRE 323
>gi|424783282|ref|ZP_18210122.1| tRNA pseudouridine 13 synthase [Campylobacter showae CSUNSWCD]
gi|421958894|gb|EKU10507.1| tRNA pseudouridine 13 synthase [Campylobacter showae CSUNSWCD]
Length = 374
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 74/131 (56%), Gaps = 8/131 (6%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L + K++ TQEAL +S++ G+ R FG+AG KDK+ ++TQ +++ ++ + LA
Sbjct: 43 GEHLIVEICKKDMTTQEALHALSEVSGVKMRDFGYAGLKDKQGMTTQFISMPRKFEAALA 102
Query: 89 ALNK---RLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNG 145
+ +++ + D L +G L GN F I L+ V+ ++ + ++G G
Sbjct: 103 NFSHDKMKILSLAAHD-----NKLRIGHLKGNSFFIRLKKVMPSEAAKLEQAVRNVGEAG 157
Query: 146 FINYFGLQRFG 156
+ NYFG QRFG
Sbjct: 158 YANYFGYQRFG 168
>gi|226356391|ref|YP_002786131.1| tRNA pseudouridine synthase D [Deinococcus deserti VCD115]
gi|226318381|gb|ACO46377.1| putative tRNA pseudouridine synthase D (tRNA-uridine isomerase
D)(tRNA pseudouridylate synthase D) [Deinococcus deserti
VCD115]
Length = 360
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 79/157 (50%), Gaps = 9/157 (5%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L L K T L ++ LG+ R G AG KD+ +V+TQ +++ + +LA
Sbjct: 49 GEHLYLQLEKTGHTTAHVLRELAAQLGVRDRDIGVAGLKDRHAVTTQWISLPAKAEPRLA 108
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ + G+R+ + L LG L GNRF + +RG V + + +A+ L G N
Sbjct: 109 TFS--MDGVRVLETTRHGNKLGLGHLRGNRFVVRVRGPVGRAAEA-QATLQELTERGVPN 165
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPR 185
YFG QRFG G + G +LRGE + + DPR
Sbjct: 166 YFGPQRFGVGGLNAE-EGLRVLRGESR-----LKDPR 196
>gi|340059886|emb|CCC54283.1| conserved hypothetical protein [Trypanosoma vivax Y486]
Length = 666
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 80/304 (26%), Positives = 125/304 (41%), Gaps = 61/304 (20%)
Query: 2 GRNSKKRKERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSF 61
GR K+R+ G + F + K N D L+S+ G+ P +
Sbjct: 276 GRGEKRRRSAGKG------------TIAVFTHLLIRKRNLDMIGLRLLLSEHYGVPPTTV 323
Query: 62 GFAGTKDKRSVSTQRVTV-----FKQRASKLAALNKRLIGIRLGD--FCYVK-------- 106
AG KDK +V+ QR +V KQ+ ++ L+ + L D YV+
Sbjct: 324 CTAGLKDKCAVTYQRCSVPGFQLPKQQRQWDREGSEALLRLSLPDNPTSYVEVLQASGPY 383
Query: 107 -EGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSV-PTHL 164
E + +GQL GN F I LR V + + GF+NYFG QRF G+ T
Sbjct: 384 DEAINIGQLKGNWFVICLRHVHGITPLEFVDRVRRVEVKGFLNYFGEQRFSEGARDSTDH 443
Query: 165 VGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQ 224
VG +L G W AV+ +L G E R +PR + + +I+Q
Sbjct: 444 VGLHILCGRWVEAVRCVLSNIPGLYESFPAHMEP-----------RHVPRGMRDQLSIVQ 492
Query: 225 CLKK----------------CPGNYLQ----ALKAIPRTLRMMYVHSYQSFLWNHAASAR 264
L + C + + AL A+P T R +++++ QS ++N S R
Sbjct: 493 ALHRAHRTGFRALSASDVENCTPYWQELCHDALLAVPYTQRALWLNAVQSLIFNCMLS-R 551
Query: 265 VQKH 268
+++H
Sbjct: 552 LKEH 555
>gi|315637881|ref|ZP_07893070.1| tRNA pseudouridine synthase D [Campylobacter upsaliensis JV21]
gi|315482036|gb|EFU72651.1| tRNA pseudouridine synthase D [Campylobacter upsaliensis JV21]
Length = 373
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 81/152 (53%), Gaps = 3/152 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L + K++ T EAL ++S+ G R FG+AG KDK+ + Q +++ K+ +KL+
Sbjct: 46 GEHLIIQICKKDLSTNEALRILSEFSGAKMRDFGYAGLKDKQGCTFQHISLPKKFEAKLS 105
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ + I + F + L +G L GN F I L+ V+ ++ + +L + GF N
Sbjct: 106 HFSHPKMKI-MQSFIH-NNKLRIGHLKGNSFFIRLKKVLASDALKLEQALENLNKMGFAN 163
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM 180
YFG QRFG + G +L+G+ VKM
Sbjct: 164 YFGYQRFGKFK-DNYKEGLAILQGKKMKNVKM 194
>gi|402548220|ref|ZP_10845084.1| tRNA pseudouridine synthase D [Campylobacter sp. FOBRC14]
gi|401015707|gb|EJP74485.1| tRNA pseudouridine synthase D [Campylobacter sp. FOBRC14]
Length = 374
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 71/128 (55%), Gaps = 2/128 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L + K++ TQEAL +S G+ R FG+AG KDK+ ++TQ V++ ++ + LA
Sbjct: 43 GEHLIIEIAKKDMTTQEALRALSDATGVKLREFGYAGLKDKQGMTTQFVSIPRKFEANLA 102
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ I I L + + L +G L N F I L+ V+ ++ + +L +GF N
Sbjct: 103 NFSHEKIKI-LSTVAH-ENKLRVGHLRANNFFIRLKKVMPSEAVKLEEAIKTLDASGFAN 160
Query: 149 YFGLQRFG 156
YFG QRFG
Sbjct: 161 YFGYQRFG 168
>gi|453050115|gb|EME97667.1| tRNA pseudouridine synthase D TruD [Streptomyces mobaraensis NBRC
13819 = DSM 40847]
Length = 357
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 89/333 (26%), Positives = 129/333 (38%), Gaps = 72/333 (21%)
Query: 36 LYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTV-FKQRASKLAALNKRL 94
L+K T EA+ L++ +G+ R +AG KD+ V+ Q ++V + A L
Sbjct: 61 LHKRGYTTMEAVRLLADRIGVAGREVRYAGLKDEDGVTEQLLSVPARALADGLPEFPDGE 120
Query: 95 IGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNG----FINYF 150
+RL + Y E L +G L GN F + LR D +D A+ GR F+NY+
Sbjct: 121 RRLRLAHYGYGHEPLAVGGLEGNAFRVVLR----DLDD--GAAGRLAGRRRINLLFVNYY 174
Query: 151 GLQRFGSGSVP--THLVGATLLRGEWKSA---VKMILDPREGERNEISKAREYYKETDDI 205
QRFG P THLVGA LL EW A + + P E + AR++ +D
Sbjct: 175 DTQRFGVPGGPKRTHLVGAALLDEEWARARHELAGLGAP------ESASARDWTGPDED- 227
Query: 206 DGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARV 265
+ ++L PRT+ Y+ ++ S+ WN +
Sbjct: 228 ---------------------------FFRSLD--PRTV-AFYLAAHSSYRWNAEVRGLI 257
Query: 266 QKHGTEHVVVGDLV--FCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGR 323
V V L F G L PE Y AD PE
Sbjct: 258 GAEHARDVTVDGLPYRFPAGAREAAALQARCPELAYTRYTWADG-------PE------E 304
Query: 324 HNLVK-TVTAADINSGKYTIDDVVLPLPGSRVI 355
H +V+ TV + G + DD PG R +
Sbjct: 305 HRVVRPTVVQTLVTVGAHGPDDA---FPGRRAV 334
>gi|227828225|ref|YP_002830005.1| tRNA pseudouridine synthase D TruD [Sulfolobus islandicus M.14.25]
gi|227830983|ref|YP_002832763.1| tRNA pseudouridine synthase D TruD [Sulfolobus islandicus L.S.2.15]
gi|229579862|ref|YP_002838261.1| tRNA pseudouridine synthase D TruD [Sulfolobus islandicus
Y.G.57.14]
gi|229581478|ref|YP_002839877.1| tRNA pseudouridine synthase D TruD [Sulfolobus islandicus
Y.N.15.51]
gi|229585453|ref|YP_002843955.1| tRNA pseudouridine synthase D TruD [Sulfolobus islandicus M.16.27]
gi|284998472|ref|YP_003420240.1| Pseudouridylate synthase [Sulfolobus islandicus L.D.8.5]
gi|385773902|ref|YP_005646469.1| tRNA pseudouridine synthase, TruD family, aPus7 [Sulfolobus
islandicus HVE10/4]
gi|385776544|ref|YP_005649112.1| tRNA pseudouridine synthase, TruD family, aPus7 [Sulfolobus
islandicus REY15A]
gi|227457431|gb|ACP36118.1| tRNA pseudouridine synthase D TruD [Sulfolobus islandicus L.S.2.15]
gi|227460021|gb|ACP38707.1| tRNA pseudouridine synthase D TruD [Sulfolobus islandicus M.14.25]
gi|228010577|gb|ACP46339.1| tRNA pseudouridine synthase D TruD [Sulfolobus islandicus
Y.G.57.14]
gi|228012194|gb|ACP47955.1| tRNA pseudouridine synthase D TruD [Sulfolobus islandicus
Y.N.15.51]
gi|228020503|gb|ACP55910.1| tRNA pseudouridine synthase D TruD [Sulfolobus islandicus M.16.27]
gi|284446368|gb|ADB87870.1| Pseudouridylate synthase [Sulfolobus islandicus L.D.8.5]
gi|323475292|gb|ADX85898.1| tRNA pseudouridine synthase, TruD family, aPus7 [Sulfolobus
islandicus REY15A]
gi|323478017|gb|ADX83255.1| tRNA pseudouridine synthase, TruD family, aPus7 [Sulfolobus
islandicus HVE10/4]
Length = 377
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 119/263 (45%), Gaps = 32/263 (12%)
Query: 17 DSRGSENWP-EQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQ 75
D + + W E+ GK+ + L K D L I K +L + G KD ++++Q
Sbjct: 40 DFKPAHEWKGEEKGKYAVYLLTKWGIDHFSVLSEIQK---VLHSKVNYMGIKDASAITSQ 96
Query: 76 RVTVFKQRASKLAALNK------RLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVD 129
V + + +L K + +G F + GN F I+L
Sbjct: 97 LVYITLTKKQELINEYKSNSFILKFLGYSSMKFNHT----------GNIFEISLS---TS 143
Query: 130 SEDVIKASANSLGRNGFINYF-GLQRFGSGSVPTHLVGATLLRGEWKSAVKMILD-PREG 187
+ D++ + +N ++ F G QRFG+ THL+G LL+ +W+ A +IL P
Sbjct: 144 NFDLVVERVRQIEKNPYLPAFIGYQRFGTRRPVTHLIGKYLLKRDWEKAFYLILTYPFLS 203
Query: 188 ERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALK--AIPRTLR 245
E EI + R+ + D + +R +P E+ +L+ K YL ALK IP +L
Sbjct: 204 ESKEIIEIRKLIIK-GDFNEAVRLIPSKFKQEKLLLKNYMKFNSYYL-ALKNSFIPISL- 260
Query: 246 MMYVHSYQSFLWNHAASARVQKH 268
Y+ +YQS+L+N S R+ K+
Sbjct: 261 --YLDAYQSYLFNMYLSRRLDKY 281
>gi|378754514|gb|EHY64545.1| tRNA pseudouridine synthase D [Nematocida sp. 1 ERTm2]
Length = 579
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 83/178 (46%), Gaps = 19/178 (10%)
Query: 96 GIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQRF 155
GI L D V+ G+ LG L NRF + L + I+ L GF NY+G QRF
Sbjct: 301 GIILTDIERVQGGIQLGDLDKNRFYLRLEAT--HGLEGIEERITMLKTEGFPNYYGNQRF 358
Query: 156 GSGSVPTHLVGATLLRGEWKSAVKMILDPREGERN--EISKAREY-----YKETDDIDGT 208
G G + LVG +++ ++K A +IL E N + A E+ Y + +I
Sbjct: 359 GYG-MSNPLVGEAMIQRDFKKAADLILKNLECLENSQRVKSALEHINKQEYSQAAEI--- 414
Query: 209 LRKLPRHLVAERAILQCL-KKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARV 265
LP E+ IL+ L +K P + I R RMMY HSYQS ++N R+
Sbjct: 415 ---LPGKFQTEKIILRSLERKIPPKII--FSRIRRENRMMYYHSYQSKIFNDTLEQRL 467
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 31/44 (70%)
Query: 36 LYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTV 79
L K+ K T +A+ +++++L I FAG KDK++++TQR+++
Sbjct: 132 LTKKGKTTHDAVEVLARLLKIPSHQINFAGNKDKKAITTQRISI 175
>gi|222823441|ref|YP_002575015.1| tRNA pseudouridine synthase D [Campylobacter lari RM2100]
gi|222538663|gb|ACM63764.1| tRNA pseudouridine synthase D [Campylobacter lari RM2100]
Length = 375
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 72/129 (55%), Gaps = 4/129 (3%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L H+ K++ T EAL ++S+ G+ R FG+ G KDK+ ++TQ +++ K+ L
Sbjct: 43 GEHLILHIQKKDLSTSEALRILSEQSGVKMRDFGYCGLKDKQGLTTQYISMPKKFEENLK 102
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVV-VDSEDVIKASANSLGRNGFI 147
+ I L F + L +G L GN F I L+ V+ VD+ + +A N + GF
Sbjct: 103 NFKHEKMKI-LESFVH-DNKLRIGHLKGNSFFIRLKKVLKVDALKIEQAFKN-IQEQGFA 159
Query: 148 NYFGLQRFG 156
NYFG QRFG
Sbjct: 160 NYFGYQRFG 168
>gi|238620416|ref|YP_002915242.1| tRNA pseudouridine synthase D TruD [Sulfolobus islandicus M.16.4]
gi|238381486|gb|ACR42574.1| tRNA pseudouridine synthase D TruD [Sulfolobus islandicus M.16.4]
Length = 377
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 119/263 (45%), Gaps = 32/263 (12%)
Query: 17 DSRGSENWP-EQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQ 75
D + + W E+ GK+ + L K D L I K +L + G KD ++++Q
Sbjct: 40 DFKPAHEWKGEKKGKYAVYLLTKWGIDHFSVLSEIQK---VLHSKVNYMGIKDASAITSQ 96
Query: 76 RVTVFKQRASKLAALNK------RLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVD 129
V + + +L K + +G F + GN F I+L
Sbjct: 97 LVYITLTKKQELINEYKSNSFILKFLGYSSMKFNHT----------GNIFEISLS---TS 143
Query: 130 SEDVIKASANSLGRNGFINYF-GLQRFGSGSVPTHLVGATLLRGEWKSAVKMILD-PREG 187
+ D++ + +N ++ F G QRFG+ THL+G LL+ +W+ A +IL P
Sbjct: 144 NFDLVVERVRQIEKNPYLPAFIGYQRFGTRRPVTHLIGKYLLKRDWEKAFYLILTYPFLS 203
Query: 188 ERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALK--AIPRTLR 245
E EI + R+ + D + +R +P E+ +L+ K YL ALK IP +L
Sbjct: 204 ESKEIIEIRKLIIK-GDFNEAVRLIPSKFKQEKLLLKNYMKFNSYYL-ALKNSFIPISL- 260
Query: 246 MMYVHSYQSFLWNHAASARVQKH 268
Y+ +YQS+L+N S R+ K+
Sbjct: 261 --YLDAYQSYLFNMYLSRRLDKY 281
>gi|57242544|ref|ZP_00370482.1| conserved hypothetical protein TIGR00094 [Campylobacter upsaliensis
RM3195]
gi|57016829|gb|EAL53612.1| conserved hypothetical protein TIGR00094 [Campylobacter upsaliensis
RM3195]
Length = 373
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 81/152 (53%), Gaps = 3/152 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L + K++ T EAL ++S+ G R FG+AG KDK+ + Q +++ K+ +KL+
Sbjct: 46 GEHLIIQICKKDLSTNEALRILSEFSGAKMRDFGYAGLKDKQGCTFQHISLPKKFEAKLS 105
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ + I + F + L +G L GN F I L+ V+ ++ + +L + GF N
Sbjct: 106 HFSHPKMKI-MQSFIH-NNKLRIGHLKGNSFFIRLKKVLASDALKLEQALENLNKMGFAN 163
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM 180
YFG QRFG + G +L+G+ VKM
Sbjct: 164 YFGYQRFGKFK-DNYKEGLAILQGKKMKNVKM 194
>gi|157736992|ref|YP_001489675.1| tRNA pseudouridine synthase D [Arcobacter butzleri RM4018]
gi|157698846|gb|ABV67006.1| tRNA pseudouridine synthase D [Arcobacter butzleri RM4018]
Length = 354
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 100/238 (42%), Gaps = 66/238 (27%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L L K++ T +A+ ++++ L R FG+AG KDK +++ Q +++ ++ KL
Sbjct: 38 GEHLILKLRKKDLATWDAIEILARYLECSTREFGYAGLKDKNAMTIQSISIHRKFEEKLQ 97
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
I++ + Y + +G L GN+F I L+ V + + I+ + + G N
Sbjct: 98 NFQHE--NIKILETTYHNNKIKIGHLKGNKFFIRLKRVGLVEKRKIEEALGQIATFGIPN 155
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDDIDGT 208
YFG QRFG EG+ Y K D IDG
Sbjct: 156 YFGFQRFGI----------------------------EGDN--------YKKGKDIIDGK 179
Query: 209 LRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQ 266
L+ ER R L+ MY+++YQS+L+N S R++
Sbjct: 180 LK--------ERN--------------------RNLKQMYINAYQSYLFNSWLSKRIE 209
>gi|294909661|ref|XP_002777820.1| tRNA pseudouridine synthase D, putative [Perkinsus marinus ATCC
50983]
gi|239885782|gb|EER09615.1| tRNA pseudouridine synthase D, putative [Perkinsus marinus ATCC
50983]
Length = 547
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 95/194 (48%), Gaps = 21/194 (10%)
Query: 112 GQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFG----SGSVPTHLVGA 167
G L+GN F + +RGV + ++ SL GFINYFG QRFG S+P LVG
Sbjct: 318 GMLMGNWFGLRIRGVCSGASKKLQ----SLQTVGFINYFGKQRFGFELNGVSLPV-LVGG 372
Query: 168 TLLRGEWKSAVKMILDPREGERNEISKAREYY---KETDDIDGTLRKLPRHLVAERAILQ 224
+LL G+ K A+++ P + ++ I E + +R LP + + + +
Sbjct: 373 SLLSGDIKRALQLWAWPSDVDKGSIHGIYEEWLCDGRASKALQRIRTLPSAMREKLTLWE 432
Query: 225 CLKKCPGN------YLQALK--AIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVG 276
+ + G+ Y +A+K +P+ + ++ +Y + LWN AS R++ G V VG
Sbjct: 433 RVLEHVGDNAGEPQYREAIKHLNLPKAMLHLFPTAYSACLWNRLASRRIRDGGL-RVRVG 491
Query: 277 DLVFCKGDDTEKEL 290
DLV + +EL
Sbjct: 492 DLVAIGAGENFEEL 505
>gi|294911912|ref|XP_002778096.1| tRNA pseudouridine synthase D, putative [Perkinsus marinus ATCC
50983]
gi|239886217|gb|EER09891.1| tRNA pseudouridine synthase D, putative [Perkinsus marinus ATCC
50983]
Length = 508
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 70/138 (50%), Gaps = 14/138 (10%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASK-- 86
GK R L+K N DT L ++ K L + S +AG KDKR ++ Q VT+ +++
Sbjct: 333 GKRWRCVLHKANLDTPRVLAMLEKKLRLPRESIHYAGLKDKRGLTYQYVTIPATHSAEEI 392
Query: 87 LAALNKRL----IGIRLGDFCYVKEG----LLLGQLLGNRFTITLRGVVVDSEDVIKASA 138
+AL K+ G + D V + G L GN F I LRGV S ++
Sbjct: 393 RSALEKQCGDASRGWAVIDNFQVHDAPEKKFKCGTLYGNCFRIRLRGVEPGSSSAVE--- 449
Query: 139 NSLGRNGFINYFGLQRFG 156
S+ R GFINYFGLQRFG
Sbjct: 450 -SVRRTGFINYFGLQRFG 466
>gi|315636184|ref|ZP_07891438.1| tRNA pseudouridine synthase D [Arcobacter butzleri JV22]
gi|315479545|gb|EFU70224.1| tRNA pseudouridine synthase D [Arcobacter butzleri JV22]
Length = 354
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 100/238 (42%), Gaps = 66/238 (27%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L L K++ T +A+ ++++ L R FG+AG KDK +++ Q +++ ++ KL
Sbjct: 38 GEHLILKLRKKDLATWDAIEILARYLECNTREFGYAGLKDKNAMTIQSISIHRKFEEKLQ 97
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
I++ + Y + +G L GN+F I L+ V + + I+ + + G N
Sbjct: 98 NFQHE--NIKILETTYHNNKIKIGHLKGNKFFIRLKRVGLVEKRKIEEALGQIATFGIPN 155
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDDIDGT 208
YFG QRFG EG+ Y K D IDG
Sbjct: 156 YFGFQRFGI----------------------------EGDN--------YKKGKDIIDGK 179
Query: 209 LRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQ 266
L+ ER R L+ MY+++YQS+L+N S R++
Sbjct: 180 LK--------ERN--------------------RNLKQMYINAYQSYLFNSWLSKRIE 209
>gi|283956830|ref|ZP_06374304.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
1336]
gi|283791691|gb|EFC30486.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
1336]
Length = 372
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 82/152 (53%), Gaps = 3/152 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L H+ K++ EAL ++S+ G+ R FG+AG KDK+ + Q +++ K+ S L+
Sbjct: 46 GEHLILHINKKDLTANEALKILSEASGVKIRDFGYAGLKDKQGSTFQYLSMPKKFESFLS 105
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ + I L F + + L +G L GN F I L+ V+ ++ + +L + GF N
Sbjct: 106 NFSHPKLKI-LEIFTH-ENKLRIGHLKGNSFFIRLKKVLPSDALKLEQALMNLDKQGFAN 163
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM 180
YFG QRFG + G +LRG+ VKM
Sbjct: 164 YFGYQRFGKFG-DNYKEGLEILRGKKMKNVKM 194
>gi|121612519|ref|YP_001001106.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
81-176]
gi|419618597|ref|ZP_14152131.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
129-258]
gi|189036618|sp|A1W165.1|TRUD_CAMJJ RecName: Full=tRNA pseudouridine synthase D; AltName: Full=tRNA
pseudouridine(13) synthase; AltName: Full=tRNA
pseudouridylate synthase D; AltName: Full=tRNA-uridine
isomerase D
gi|87249559|gb|EAQ72518.1| tRNA pseudouridine synthase D, putative [Campylobacter jejuni
subsp. jejuni 81-176]
gi|380594464|gb|EIB15260.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
129-258]
Length = 372
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 82/152 (53%), Gaps = 3/152 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L H+ K++ T EAL ++S+ G+ R FG+AG KDK+ + Q +++ K+ S L+
Sbjct: 46 GEHLILHINKKDLTTNEALKILSETSGVKIRDFGYAGLKDKQGSTFQYLSMPKKFESFLS 105
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ + I L F + + L +G L GN F I L+ V+ ++ + +L + GF N
Sbjct: 106 NFSHPKLKI-LEIFTH-ENKLRIGHLKGNTFFIRLKKVLPSDALKLEQALMNLDKQGFTN 163
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM 180
YFG QRFG + G +L G+ VKM
Sbjct: 164 YFGYQRFGKFG-DNYKEGLEILHGKKMKNVKM 194
>gi|398335982|ref|ZP_10520687.1| pseudouridine synthase [Leptospira kmetyi serovar Malaysia str.
Bejo-Iso9]
Length = 385
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 105/241 (43%), Gaps = 14/241 (5%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
GK++ F L K +T +AL ISK + G+AG KD+ + + Q ++ Q+ K+
Sbjct: 39 GKWMVFRLRKSGWNTLDALLRISKESKVSQNEIGYAGKKDRHATTVQFLSC--QKPLKVP 96
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+++ + F + L GNRF + LR +V ++ + + GFIN
Sbjct: 97 RELSQVLHLEPAGFS--DKPLTPEANEGNRFVLILRNLVDKELKALQTNFEKVRETGFIN 154
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYYKETDDIDG 207
Y+ QRF L L+G+ ++ +K++L DP GE+ + AR+ K G
Sbjct: 155 YYDSQRFSRFHTEFRLPVFPFLKGDAETCLKLLLTDPYPGEKKQ---ARDRKKNLQAAWG 211
Query: 208 TLRKLPRHLVA--ERAILQCLKKC----PGNYLQALKAIPRTLRMMYVHSYQSFLWNHAA 261
+ + + E I K+ Y ++ P +M + S QS +WN
Sbjct: 212 NWSQCEKLSGSKLENRIFSTFKRAGVPTSKTYFDMIQQFPEEELLMLLSSMQSLVWNEFV 271
Query: 262 S 262
S
Sbjct: 272 S 272
>gi|384155401|ref|YP_005538216.1| tRNA pseudouridine synthase D [Arcobacter butzleri ED-1]
gi|345468955|dbj|BAK70406.1| tRNA pseudouridine synthase D [Arcobacter butzleri ED-1]
Length = 354
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 100/238 (42%), Gaps = 66/238 (27%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L L K++ T +A+ ++++ L R FG+AG KDK +++ Q +++ ++ KL
Sbjct: 38 GEHLILKLRKKDLATWDAIEILARYLECSTREFGYAGLKDKNAMTIQSISIHRKFEEKLQ 97
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
I++ + Y + +G L GN+F I L+ V + + I+ + + G N
Sbjct: 98 NFQHE--NIKILETTYHNNKIKIGHLKGNKFFIRLKRVGLVEKRKIEEALGQIATFGIPN 155
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDDIDGT 208
YFG QRFG EG+ Y K D IDG
Sbjct: 156 YFGFQRFGI----------------------------EGDN--------YKKGKDIIDGK 179
Query: 209 LRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQ 266
L+ ER R L+ MY+++YQS+L+N S R++
Sbjct: 180 LK--------ERN--------------------RNLKQMYINAYQSYLFNSWLSRRIE 209
>gi|456967877|gb|EMG09176.1| tRNA pseudouridine synthase D-like protein [Leptospira interrogans
serovar Grippotyphosa str. LT2186]
Length = 204
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 86/169 (50%), Gaps = 7/169 (4%)
Query: 26 EQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRAS 85
++ GK++ F L K +T +AL ISK + G+AG KD+ + ++Q ++
Sbjct: 34 QKTGKWMIFRLQKSGWNTLDALLRISKESKVSIFEIGYAGKKDRHASTSQYIS-----CQ 88
Query: 86 KLAALNKRLIG-IRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRN 144
K + K L I+L + K+ L +GNRF + LR ++ + I+ + + +N
Sbjct: 89 KPLRVPKELTKVIQLDKIGFSKKSLSTELNVGNRFQLVLRNLLEKEIESIRNNFEKITKN 148
Query: 145 GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEI 192
GFINY+ QRF L +G+ ++ +K+IL DP GE+N +
Sbjct: 149 GFINYYDSQRFSRFHSEFRLPILPFFKGDAETCLKLILTDPFPGEKNRL 197
>gi|419622096|ref|ZP_14155338.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
LMG 23216]
gi|380600460|gb|EIB20797.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
LMG 23216]
Length = 372
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 83/152 (54%), Gaps = 3/152 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ + H+ K++ T EAL ++S+ G+ + FG+AG KDK+ + Q +++ K+ S L+
Sbjct: 46 GEHIILHINKKDLTTNEALKILSEASGVKIKDFGYAGLKDKQGSTFQYLSMPKKFESFLS 105
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ + I L F + + L +G L GN F I L+ V+ ++ + +L + GF N
Sbjct: 106 NFSHPKLKI-LEIFTH-ENKLRIGHLKGNSFFIRLKKVLPSDALKLEQALMNLDKQGFAN 163
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM 180
YFG QRFG + G +LRG+ VKM
Sbjct: 164 YFGYQRFGKFG-DNYKEGLEILRGKKMKNVKM 194
>gi|78777230|ref|YP_393545.1| tRNA pseudouridine synthase D [Sulfurimonas denitrificans DSM 1251]
gi|91207946|sp|Q30RS1.1|TRUD_SULDN RecName: Full=tRNA pseudouridine synthase D; AltName: Full=tRNA
pseudouridine(13) synthase; AltName: Full=tRNA
pseudouridylate synthase D; AltName: Full=tRNA-uridine
isomerase D
gi|78497770|gb|ABB44310.1| Pseudouridylate synthase [Sulfurimonas denitrificans DSM 1251]
Length = 357
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 74/147 (50%), Gaps = 3/147 (2%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L + K+ T E + +I+K LGI + G+AG KDK +++ Q +++ K+ K+
Sbjct: 37 GEHLILFVRKKGISTLELVSMIAKYLGIKNKEIGYAGLKDKHAMTKQYISLHKKYEEKMD 96
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+++ Y + +G L GN+F I L+ V S I + ++ G N
Sbjct: 97 TFEHE--DVKILSKTYHNNKIRIGHLNGNKFYIKLKKVNPTSALKIDEALKNIASFGMPN 154
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWK 175
YFG QRFG+ H+ G + +GE K
Sbjct: 155 YFGYQRFGTDG-NNHIDGELIAKGEKK 180
>gi|297526102|ref|YP_003668126.1| tRNA pseudouridine synthase D TruD [Staphylothermus hellenicus DSM
12710]
gi|297255018|gb|ADI31227.1| tRNA pseudouridine synthase D TruD [Staphylothermus hellenicus DSM
12710]
Length = 375
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 112/245 (45%), Gaps = 23/245 (9%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G + F + K N DT +A+ +I+K LGI ++ F G KD+ S S Q + K
Sbjct: 61 GDYAVFEIRKRNIDTLKAIRIIAKDLGIPEQNILFLGFKDRDSRSKQFFFIRKNIIYDHL 120
Query: 89 ALNKRLIGIRLGDFC-YVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFI 147
K + +F YV+ L+GN+F + ++ V D N + R+G
Sbjct: 121 VYEKVMHRDLEYEFIGYVRRKPRRKDLIGNKFVLIVKDVDKKDRDTTDHIMNMIVRHGLP 180
Query: 148 NYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILD---PREGERNEISKAREYYKETDD 204
+Y+G QRFG +HL+G LL G ++ L+ P E + + +++ +++
Sbjct: 181 SYYGYQRFGLKRFNSHLLGKYLLTGRIDLFIREFLEGIYPSESDESIYNRSFLRFEK--- 237
Query: 205 IDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASAR 264
L+ E+ ++ + + +A+ I R +R + V +Y +FL+N +
Sbjct: 238 -----------LLYEKILVNAV-----DVFKAVNKINRMIRNILVDAYAAFLYNLLLNKI 281
Query: 265 VQKHG 269
V++ G
Sbjct: 282 VEEKG 286
>gi|296108899|ref|YP_003615848.1| tRNA pseudouridine synthase D TruD [methanocaldococcus infernus ME]
gi|295433713|gb|ADG12884.1| tRNA pseudouridine synthase D TruD [Methanocaldococcus infernus ME]
Length = 381
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 69/292 (23%), Positives = 140/292 (47%), Gaps = 23/292 (7%)
Query: 34 FHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKR 93
+ L K N + +AL ISK I + G+ G KD+ +++ Q +++ K+ +LN++
Sbjct: 31 YKLTKRNIECLKALSYISKKFKIPLKDIGYCGLKDRHALTIQYISIPKKYGK--LSLNEK 88
Query: 94 LIGIRL-GDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGL 152
+ + L G+ ++K LG L GN+F I +R + + + N + + NYF
Sbjct: 89 NLKLELVGESRFLK----LGDLEGNKFKIVVRDLGEEHLKRFYENVNYIEK--IPNYFDS 142
Query: 153 QRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDDIDGTLRKL 212
QRFGS +V +++G ++ A+K+IL + +++E + + + + + G K+
Sbjct: 143 QRFGSVFNKKFIV-KEIIKGNYEEALKIILT--QYKKSENKRIKNFKRFVNQHWGDWEKI 199
Query: 213 PRHL----VAERAILQCLK--KCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQ 266
++ + + + +K K ++ +AL I L+ +++ +YQS+LWN ++
Sbjct: 200 WDYIKNKDIRAKLYVNIIKELKESNDFKKALTYIDDRLKKLFLAAYQSYLWNECVKEILK 259
Query: 267 KHGTEHVVV----GDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEV 314
E + G L+F K E E P +S+ + ++ +D V
Sbjct: 260 NKVNEPLYYNYECGTLLFFKELKEELEFKDF-PTIALDSNYNEEERKIIDRV 310
>gi|386283898|ref|ZP_10061121.1| tRNA pseudouridine synthase D [Sulfurovum sp. AR]
gi|385344801|gb|EIF51514.1| tRNA pseudouridine synthase D [Sulfurovum sp. AR]
Length = 363
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 5/133 (3%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G FL + K + T + + +++K G+ R G+AG KDK + + Q +++ K+ +L
Sbjct: 39 GNFLILKIKKTDMSTWKLVTVLAKATGLQERDIGYAGLKDKNATTIQYISLPKKYEKEL- 97
Query: 89 ALNKRLIG--IRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGF 146
NK L I + + Y K + +G L GNRF+I L + + +A + +G
Sbjct: 98 --NKNLTTEKIEILERTYNKAPIKIGHLKGNRFSIVLHDIAENEAKFFNTTAKKMQVDGI 155
Query: 147 INYFGLQRFGSGS 159
NY+G QRFG S
Sbjct: 156 PNYYGYQRFGEDS 168
>gi|154148223|ref|YP_001406570.1| tRNA pseudouridine synthase D [Campylobacter hominis ATCC BAA-381]
gi|153804232|gb|ABS51239.1| tRNA pseudouridine synthase D [Campylobacter hominis ATCC BAA-381]
Length = 365
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 73/140 (52%), Gaps = 3/140 (2%)
Query: 36 LYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLI 95
L K++ T +AL ++S+ LG+ R FG+AG KDK +++Q ++ + + + +
Sbjct: 45 LQKKDLTTFDALHILSEHLGVKIRDFGYAGLKDKDGLTSQFISFPAKFVADIENFSHE-- 102
Query: 96 GIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQRF 155
I++ K L +G L GN F I L+ V I+A+ ++ GF NYFG QRF
Sbjct: 103 KIKILSITKHKNKLKIGHLKGNNFFIRLKKVSQIDAQKIQAALQTIANQGFANYFGYQRF 162
Query: 156 GSGSVPTHLVGATLLRGEWK 175
G S G +L+GE K
Sbjct: 163 GKFS-DNFEQGEKILKGEKK 181
>gi|325283292|ref|YP_004255833.1| tRNA pseudouridine synthase D [Deinococcus proteolyticus MRP]
gi|324315101|gb|ADY26216.1| tRNA pseudouridine synthase D [Deinococcus proteolyticus MRP]
Length = 367
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 72/154 (46%), Gaps = 14/154 (9%)
Query: 25 PEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRA 84
P G+ L HL KE T L +++ L + R G AG KD+ +V+TQ V+V
Sbjct: 53 PAGEGEHLMIHLRKEGHTTGHLLRELARQLRVKDRDIGSAGQKDRHAVTTQWVSV----- 107
Query: 85 SKLAALNKRLIGIRLGDFCYVKEG-----LLLGQLLGNRFTITLRGVVVDSEDVIKASAN 139
AA KRL L ++ G L LG L GNRF + +RG +E A
Sbjct: 108 --PAAAEKRLPHFALPGVEVLEAGRHTGKLGLGHLRGNRFRVEVRGAPGTAEQA-AARLR 164
Query: 140 SLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGE 173
L G NYFG QRFG G + G +LRGE
Sbjct: 165 ELEAQGIPNYFGPQRFGLGGI-NAAEGVRVLRGE 197
>gi|417769407|ref|ZP_12417323.1| tRNA pseudouridine synthase D-like protein [Leptospira interrogans
serovar Pomona str. Pomona]
gi|418680725|ref|ZP_13241967.1| tRNA pseudouridine synthase D-like protein [Leptospira interrogans
serovar Pomona str. Kennewicki LC82-25]
gi|400327559|gb|EJO79806.1| tRNA pseudouridine synthase D-like protein [Leptospira interrogans
serovar Pomona str. Kennewicki LC82-25]
gi|409948557|gb|EKN98545.1| tRNA pseudouridine synthase D-like protein [Leptospira interrogans
serovar Pomona str. Pomona]
gi|455665716|gb|EMF31223.1| tRNA pseudouridine synthase D-like protein [Leptospira interrogans
serovar Pomona str. Fox 32256]
Length = 243
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 92/184 (50%), Gaps = 10/184 (5%)
Query: 26 EQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRAS 85
++ GK++ F L K +T +AL ISK + G+AG KD+ + ++Q ++
Sbjct: 34 QKTGKWMIFRLQKSGWNTLDALLRISKESKVSIFEIGYAGKKDRHASTSQYIS-----CQ 88
Query: 86 KLAALNKRLIG-IRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRN 144
K + K L I+L + K+ L +GNRF + LR ++ + I+ + + +N
Sbjct: 89 KPLRVPKELTKVIQLDKIGFSKKSLSTELNVGNRFQLVLRNLLEKEIESIRNNFEKITKN 148
Query: 145 GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYYKETD 203
GFINY+ QRF L +G+ ++ +K+IL DP GE+ + AR+ K
Sbjct: 149 GFINYYDSQRFSRFHSEFRLPILPFFKGDAETCLKLILTDPFPGEKKQ---ARDRKKILY 205
Query: 204 DIDG 207
D+ G
Sbjct: 206 DLWG 209
>gi|106364405|dbj|BAE95231.1| hypothetical conserved protein [unclutured Candidatus Nitrosocaldus
sp.]
Length = 482
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 97/202 (48%), Gaps = 31/202 (15%)
Query: 114 LLGNRFTITLRGVVVDSED----------VIKASANSLGRNGFINYFGLQRFGSGSVPTH 163
L+GNRFTIT+ +D D V++ A +G N++G QRFGS TH
Sbjct: 191 LIGNRFTITID---IDPSDHEYLEKIKSVVMEVRARRVG-----NFYGYQRFGSIRPVTH 242
Query: 164 LVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAIL 223
LVG + R ++ AV L +E S++ + ++ +P H+ ER +
Sbjct: 243 LVGKAITRRMFREAVDTFLTYIGECEDEQSRSVRLMLRDGISEESIENIPYHMDLERDLA 302
Query: 224 QCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQK-HGTEHVVVGDLVF-- 280
+ + K + ++AL+ +P ++R ++V +YQ++++N S +++ + +GD+ F
Sbjct: 303 KSMIKS-SDPIRALRRLPISVRRLFVEAYQAYIFNRTLSTAIREGYDISTPSMGDICFSI 361
Query: 281 ---------CKGDDTEKELGCV 293
C+ D + + G V
Sbjct: 362 DANNKVGDICRFDGSSSKSGLV 383
>gi|407853221|gb|EKG06299.1| tRNA pseudouridine synthase, putative [Trypanosoma cruzi]
Length = 950
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 67/131 (51%), Gaps = 9/131 (6%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
+L+ +L+K + AL I++ L + P AG KD + QRV + + + AAL
Sbjct: 355 YLQCYLHKRHIAHSVALANIAQTLRMHPSGISVAGIKDYIGDTIQRVRL--KNITPAAAL 412
Query: 91 NK------RLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRN 144
+ + L DF Y E L+ G+L GN F I LR V EDV +A ++ +N
Sbjct: 413 EANSFFRMKKWSMTLSDFSYQNEPLVPGRLFGNHFRIVLRDVTAAREDVERA-LHAFEQN 471
Query: 145 GFINYFGLQRF 155
GF NY+G QRF
Sbjct: 472 GFPNYYGCQRF 482
>gi|313682695|ref|YP_004060433.1| tRNA pseudouridine synthase d trud [Sulfuricurvum kujiense DSM
16994]
gi|313155555|gb|ADR34233.1| tRNA pseudouridine synthase D TruD [Sulfuricurvum kujiense DSM
16994]
Length = 363
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 66/128 (51%), Gaps = 2/128 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L H+ K+N T + + + S LGI R G+AG KDK + + Q +++ ++ L
Sbjct: 37 GEHLVLHVRKKNLSTWQMIDIFSNHLGIKGRDIGYAGLKDKNAQTKQYISLPRKYEGVLE 96
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
GI++ + Y + +G L GNRF I L+ V + I+ + + + G N
Sbjct: 97 NFEHE--GIKILEKTYHNNKIRVGHLKGNRFFIRLKKVNPTAAFKIQEALKLIKKQGMPN 154
Query: 149 YFGLQRFG 156
YFG QRFG
Sbjct: 155 YFGFQRFG 162
>gi|157164757|ref|YP_001466702.1| tRNA pseudouridine synthase D [Campylobacter concisus 13826]
gi|112800484|gb|EAT97828.1| tRNA pseudouridine synthase D [Campylobacter concisus 13826]
Length = 374
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 73/128 (57%), Gaps = 2/128 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L + K++ T +AL +S++ G R FG+AG KDK+ ++TQ +++ ++ S LA
Sbjct: 43 GEHLIVEISKKDMTTSDALHALSEVTGAKMRDFGYAGLKDKQGMTTQFISMPRKFESALA 102
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ +++ + K L +G L GN F I L+ V+ S ++ + S+ + G+ N
Sbjct: 103 NFSHE--KMKILNLNVHKNKLRIGHLKGNSFFIRLKKVLPSSAKKLEQAFVSIDKMGYAN 160
Query: 149 YFGLQRFG 156
YFG QRFG
Sbjct: 161 YFGYQRFG 168
>gi|416121344|ref|ZP_11595025.1| tRNA pseudouridine 13 synthase [Campylobacter concisus UNSWCD]
gi|384576790|gb|EIF06121.1| tRNA pseudouridine 13 synthase [Campylobacter concisus UNSWCD]
Length = 374
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 73/128 (57%), Gaps = 2/128 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L + K++ T +AL +S++ G R FG+AG KDK+ ++TQ +++ ++ S LA
Sbjct: 43 GEHLIVEISKKDMTTSDALHALSEVTGAKMRDFGYAGLKDKQGMTTQFISMPRKFESALA 102
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ +++ + K L +G L GN F I L+ V+ S ++ + S+ + G+ N
Sbjct: 103 NFSHE--KMKILNLNVHKNKLRIGHLKGNSFFIRLKKVLPSSAKKLEQAFVSIDKMGYAN 160
Query: 149 YFGLQRFG 156
YFG QRFG
Sbjct: 161 YFGYQRFG 168
>gi|223040894|ref|ZP_03611158.1| tRNA pseudouridine synthase D [Campylobacter rectus RM3267]
gi|222877856|gb|EEF12973.1| tRNA pseudouridine synthase D [Campylobacter rectus RM3267]
Length = 374
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 72/128 (56%), Gaps = 2/128 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L + K++ TQEAL +S++ G+ R FG+AG KDK+ ++TQ +++ ++ S +A
Sbjct: 43 GEHLIIEICKKDMTTQEALHALSEVSGVKMRDFGYAGLKDKQGMTTQFISMPRKFESAIA 102
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ +++ + L +G L GN F I L+ V+ ++ + ++ G+ N
Sbjct: 103 NFSHE--KMKILNLSAHDNKLRIGHLKGNSFFIRLKKVMSGEAAKLEQAVRNIDEAGYPN 160
Query: 149 YFGLQRFG 156
YFG QRFG
Sbjct: 161 YFGYQRFG 168
>gi|395225236|ref|ZP_10403764.1| tRNA pseudouridine synthase, TruD family [Thiovulum sp. ES]
gi|394446577|gb|EJF07396.1| tRNA pseudouridine synthase, TruD family [Thiovulum sp. ES]
Length = 366
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 66/115 (57%), Gaps = 3/115 (2%)
Query: 43 TQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNK-RLIGIRLGD 101
T E + +++K+LG+ R G+AG KDK +++ Q +++ K+ + LN+ R + + +
Sbjct: 53 TWEMVSIVAKVLGMNKRDIGYAGLKDKNALTIQHISLPKKYLENVEKLNEERSLSVLETN 112
Query: 102 FCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFG 156
F K + LG L GNRF I L+ V S ++ + + ++G N+FG QRFG
Sbjct: 113 FH--KNKIKLGHLKGNRFFIRLKKVTPTSAKRLEIAIKEIAKSGIPNFFGFQRFG 165
>gi|365152993|ref|ZP_09349438.1| TruD family tRNA pseudouridine synthase [Campylobacter sp. 10_1_50]
gi|363652502|gb|EHL91538.1| TruD family tRNA pseudouridine synthase [Campylobacter sp. 10_1_50]
Length = 374
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 73/128 (57%), Gaps = 2/128 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L + K++ T +AL +S++ G R FG+AG KDK+ ++TQ +++ ++ S LA
Sbjct: 43 GEHLIVEISKKDMTTSDALHALSEVTGAKMRDFGYAGLKDKQGMTTQFISMPRKFESALA 102
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ +++ + K L +G L GN F I L+ V+ S ++ + S+ + G+ N
Sbjct: 103 NFSHE--KMKILNLNVHKNKLRIGHLKGNSFFIRLKKVLPSSAKKLEQAFVSIDKMGYAN 160
Query: 149 YFGLQRFG 156
YFG QRFG
Sbjct: 161 YFGYQRFG 168
>gi|312792621|ref|YP_004025544.1| tRNA pseudouridine synthase d trud [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312179761|gb|ADQ39931.1| tRNA pseudouridine synthase D TruD [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 388
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 117/241 (48%), Gaps = 16/241 (6%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G++ + L K + +T +AL ISK I G AG KD+ +++ Q ++V ++
Sbjct: 24 GRYKIYLLTKRHWNTVDALRFISKENKIPLEKIGCAGRKDRHALTFQYISVPREYTINFN 83
Query: 89 ALNKR--LIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGF 146
N + LIG DF L+L GN F IT+R + E V++ N + + GF
Sbjct: 84 KENVKVELIGYS-DDFV---SPLILE---GNFFEITIRKLKNKDEKVLR-RLNEVQQFGF 135
Query: 147 INYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDDID 206
NYF QRFGS +G +++ + A+K+ E + K R+ K+ ++
Sbjct: 136 PNYFDDQRFGSTQSEDEFIGEKIVKKHYNGALKLYFTTIHPEDKKEEKQRK--KKISELW 193
Query: 207 GTLRK-LPR-HLVAERAILQCLKKCPGNY--LQALKAIPRTLRMMYVHSYQSFLWNHAAS 262
G K LP ER I++ L K + ++AL IP+ +++ +YQS++WN S
Sbjct: 194 GDFEKILPLCKTKVERDIIKTLLKGKSRHYLIEALNLIPKEEMSIFLSAYQSYIWNRTLS 253
Query: 263 A 263
+
Sbjct: 254 S 254
>gi|294929548|ref|XP_002779271.1| tRNA pseudouridine synthase D, putative [Perkinsus marinus ATCC
50983]
gi|239888324|gb|EER11066.1| tRNA pseudouridine synthase D, putative [Perkinsus marinus ATCC
50983]
Length = 378
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 86/367 (23%), Positives = 138/367 (37%), Gaps = 81/367 (22%)
Query: 58 PRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKR--LIGIRLGDFCYVKEGLLLGQLL 115
P +AG KDK + + Q +T+ + L ++R + LGD V+ L G L
Sbjct: 9 PTVITYAGRKDKGADTMQYITLPQVHFQNLFFSSRRGEALPFELGDPVGVRAPLTWGALE 68
Query: 116 GNRFTITLRG---VVVDS--EDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLL 170
GN F +T G ++ +S ++V+ +S GF+N+FGLQRFG+ + +VG L
Sbjct: 69 GNYFKLTFVGQPRIIGNSKHDEVLTKIRDS----GFVNFFGLQRFGAPRFNSPVVGRYLE 124
Query: 171 RGEWKSAVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVA----ERAILQCL 226
GE AV +L K RE + +G +R + L + L
Sbjct: 125 NGEHLEAVVAMLI------GLCPKGRE-WTALKLTNGAIRSVYESLSSGYEGHEMRLLLA 177
Query: 227 KKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDT 286
+ + +AI YVH++ S LWN+ RV + GT + + GD+V +
Sbjct: 178 RAAKQEDVDWQRAISSRQWSTYVHAWHSLLWNYMVQFRVNEFGT-NPIEGDMVINGPGGS 236
Query: 287 EKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAADINSGKYTIDDVV 346
P + ++ + + H V
Sbjct: 237 VHHF----PPYIWDGQKQSSVACH----------------------------------VC 258
Query: 347 LPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTG------NYRRVFQ 400
LPLP + + P N E L ++EF I+S G R V
Sbjct: 259 LPLPVNSCLKPHNKTGEFLDKL--------------MREFGISSFNGRGSSAKEAREVLV 304
Query: 401 KPMDFEW 407
+P +W
Sbjct: 305 RPTGLKW 311
>gi|455790980|gb|EMF42812.1| tRNA pseudouridine synthase D-like protein [Leptospira interrogans
serovar Lora str. TE 1992]
Length = 229
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 91/182 (50%), Gaps = 7/182 (3%)
Query: 26 EQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRAS 85
++ GK++ F L K +T +AL ISK + G+AG KD+ + ++Q ++
Sbjct: 34 QKTGKWMIFRLQKSGWNTLDALLRISKESKVSIFEIGYAGKKDRHASTSQYIS-----CQ 88
Query: 86 KLAALNKRLIG-IRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRN 144
K + K L I+L + K+ L +GNRF + LR ++ + I+ + + +N
Sbjct: 89 KPLRVPKELTKVIQLDKIGFSKKSLSTELNVGNRFQLVLRNLLEKEIESIRNNFEKITKN 148
Query: 145 GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DPREGERNEISKAREYYKETD 203
GFINY+ QRF L +G+ ++ +K+IL DP GE+ + ++++
Sbjct: 149 GFINYYDSQRFSRFHSEFRLPILPFFKGDAETCLKLILTDPFPGEKKQARDRKKFFMTFG 208
Query: 204 DI 205
+I
Sbjct: 209 EI 210
>gi|15806989|ref|NP_295714.1| hypothetical protein DR_1991 [Deinococcus radiodurans R1]
gi|37089943|sp|Q9RSX8.1|TRUD_DEIRA RecName: Full=tRNA pseudouridine synthase D; AltName: Full=tRNA
pseudouridine(13) synthase; AltName: Full=tRNA
pseudouridylate synthase D; AltName: Full=tRNA-uridine
isomerase D
gi|6459780|gb|AAF11542.1|AE002037_3 conserved hypothetical protein [Deinococcus radiodurans R1]
Length = 353
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 80/161 (49%), Gaps = 9/161 (5%)
Query: 25 PEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRA 84
P G++L H+ K T + + LG+ R G AG KD+ +V+TQ +++ +
Sbjct: 35 PGGSGEYLYLHVEKTRHTTAHVVRELCAQLGVRDRDVGVAGLKDRHAVTTQWLSLPAKVE 94
Query: 85 SKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRN 144
++ + L G+R+ + L +G L GNRF + +RG +E + A +L +
Sbjct: 95 PRMGDFS--LPGVRILETSRHTNKLGMGHLHGNRFVVRVRGAAGMAEQAGETLA-TLAQG 151
Query: 145 GFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPR 185
G NYFG QRFG G + G +LRGE + + DPR
Sbjct: 152 GVPNYFGPQRFGLGGLNAE-EGLRVLRGESE-----LRDPR 186
>gi|146302991|ref|YP_001190307.1| tRNA pseudouridine synthase D [Metallosphaera sedula DSM 5348]
gi|145701241|gb|ABP94383.1| tRNA pseudouridine synthase D, TruD [Metallosphaera sedula DSM
5348]
Length = 365
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 116/256 (45%), Gaps = 27/256 (10%)
Query: 19 RGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVT 78
RGSE+ GK+ + L K + + ++ +LG PR + G KD +V+ Q +
Sbjct: 47 RGSES-----GKYAVYLLRKRGMEHNAVMSRLASILGEKPR---YLGIKDTNAVTEQLIY 98
Query: 79 VFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASA 138
V R SK + I F K GN F+I L D E+ +K
Sbjct: 99 V--TRKSK-DFHREESFSIEFMGFTSTKL-----NHTGNIFSIKLE--TGDKEE-LKRRV 147
Query: 139 NSLGRNGFINYF-GLQRFGSGSVPTHLVGATLLRGEWKSAVKMILD-PREGERNEISKAR 196
N++ G + F G QRFG+ THLVG L + +W AV IL P E I R
Sbjct: 148 NTIKGEGVLPAFIGYQRFGTRRPITHLVGKALTQRDWCKAVDFILGYPFVWENENIRLFR 207
Query: 197 EYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFL 256
E Y + + + LRK+P ER I L+K + L AL+ R YV +YQS+L
Sbjct: 208 EEYMKGEVKEELLRKIPSQ---ERNIYLELRKTE-DCLSALRK-SRVKLSFYVEAYQSYL 262
Query: 257 WNHAASARVQKHGTEH 272
+N S ++ ++ T H
Sbjct: 263 FNRVLSRKL-RYSTVH 277
>gi|291277444|ref|YP_003517216.1| tRNA pseudouridine synthase D, TruD [Helicobacter mustelae 12198]
gi|290964638|emb|CBG40492.1| putative tRNA pseudouridine synthase D, TruD [Helicobacter mustelae
12198]
Length = 370
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 67/126 (53%), Gaps = 6/126 (4%)
Query: 35 HLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA----AL 90
H+ K+ TQE L ++S +LG + FG+AG KDK + +TQ +++ K+ LA L
Sbjct: 44 HVRKKGLSTQEMLKILSNVLGCRIQEFGYAGLKDKSATTTQYLSINKKFTKDLAIHLPVL 103
Query: 91 NKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYF 150
++ GI++ D Y + LG L GN F I L+ + ++ + + G NYF
Sbjct: 104 KEQ--GIKILDETYHDNKIKLGHLKGNSFFIRLKKITPLLAMQLENAIQKIRTQGLPNYF 161
Query: 151 GLQRFG 156
G QRFG
Sbjct: 162 GYQRFG 167
>gi|21231157|ref|NP_637074.1| tRNA pseudouridine synthase D [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66768835|ref|YP_243597.1| tRNA pseudouridine synthase D [Xanthomonas campestris pv.
campestris str. 8004]
gi|37089012|sp|Q8P9Y9.1|TRUD_XANCP RecName: Full=tRNA pseudouridine synthase D; AltName: Full=tRNA
pseudouridine(13) synthase; AltName: Full=tRNA
pseudouridylate synthase D; AltName: Full=tRNA-uridine
isomerase D
gi|81305198|sp|Q4UTP6.1|TRUD_XANC8 RecName: Full=tRNA pseudouridine synthase D; AltName: Full=tRNA
pseudouridine(13) synthase; AltName: Full=tRNA
pseudouridylate synthase D; AltName: Full=tRNA-uridine
isomerase D
gi|21112796|gb|AAM40998.1| hydrogenase subunit [Xanthomonas campestris pv. campestris str.
ATCC 33913]
gi|66574167|gb|AAY49577.1| hydrogenase subunit [Xanthomonas campestris pv. campestris str.
8004]
Length = 367
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 75/143 (52%), Gaps = 12/143 (8%)
Query: 16 FDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQ 75
FD+ G G+ L + K ++T +++ GI G+AG KD+ +V+TQ
Sbjct: 35 FDASGE-------GEHLLLTVRKRGQNTAYVAKRLAQWAGIAEMGIGYAGLKDRHAVTTQ 87
Query: 76 RVTVF--KQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDV 133
R +V K+ A L+AL+ +++ + + L G L GNRF +TLR VV D + V
Sbjct: 88 RFSVHLPKRIAPDLSALDDD--DMQVVEHTWHNRKLQRGALHGNRFVLTLREVVGD-QAV 144
Query: 134 IKASANSLGRNGFINYFGLQRFG 156
I A +++ G N+FG QRFG
Sbjct: 145 IDARLHAIAARGIPNWFGEQRFG 167
>gi|407848168|gb|EKG03629.1| hypothetical protein TCSYLVIO_005322 [Trypanosoma cruzi]
Length = 651
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 111/259 (42%), Gaps = 32/259 (12%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTV--FKQRASK 86
G F + K N D + L+S+ + + AG KDK +V+ QR +V Q +
Sbjct: 277 GLFTHLVVRKRNLDMMKLRLLLSRNFDVSENAVCTAGLKDKCAVTYQRCSVPLSTQNSKS 336
Query: 87 LAALNKRLIGIRLGDFCYVKEGLLL----------GQLLGNRFTITLRGVVVDSEDVIKA 136
A + + + GD E L L GQL GN F++ L V + +
Sbjct: 337 RAQHGETVRLVWPGDPSSYAEILQLLEPCDTPVGIGQLNGNWFSVRLVDVRGMTFCELVQ 396
Query: 137 SANSLGRNGFINYFGLQRFGS--GSVPTHLVGATLLRGEWKSAVKMILDPREG---ERNE 191
+ NGF+NYFG QRF S H VG L+ G W AV+ IL G E
Sbjct: 397 RVRHIESNGFLNYFGQQRFSEHVSSTKDH-VGVHLMAGRWAGAVQSILSCVPGIYASFPE 455
Query: 192 ISKAREYYKETDDIDGT-----LRKLPRHLVAERAILQCL---KKCPGNYLQ----ALKA 239
KAR Y +T D L++L R A + C+ C + Q AL +
Sbjct: 456 RMKAR--YIQTSARDAVYVVKALQRLHRTQYASSSNPLCMDDVANCTSRWQQLCHDALLS 513
Query: 240 IPRTLRMMYVHSYQSFLWN 258
+P +R+++V + QS ++N
Sbjct: 514 VPYNIRVLWVSAAQSLIFN 532
>gi|307591585|ref|YP_003900384.1| tRNA pseudouridine synthase D TruD [Cyanothece sp. PCC 7822]
gi|306986439|gb|ADN18318.1| tRNA pseudouridine synthase D TruD [Cyanothece sp. PCC 7822]
Length = 352
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 73/146 (50%), Gaps = 12/146 (8%)
Query: 43 TQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQ-RASKLAALNKRLIGIRLGD 101
T E +I + + P+ G KD+ ++ Q ++V K + + N + I R G
Sbjct: 48 TFEVQRIICQYFDLNPKDVSAQGLKDEDGITLQTISVRKHLNQNDVLRFNNQHIN-RPG- 105
Query: 102 FCYVKEGLLLGQ-------LLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQR 154
C +KE L G+ L GN FT+T+R V V+ D I + + FINY+ LQR
Sbjct: 106 ICTIKEILGYGKKTVTPKALHGNTFTVTVRSVAVELADKIAETFHLNNDFEFINYYDLQR 165
Query: 155 FG--SGSVPTHLVGATLLRGEWKSAV 178
FG G HL+G +++G WKSA+
Sbjct: 166 FGLPGGPYNAHLIGELIIQGNWKSAL 191
>gi|162452590|ref|YP_001614957.1| hypothetical protein sce4314 [Sorangium cellulosum So ce56]
gi|161163172|emb|CAN94477.1| hypothetical protein sce4314 [Sorangium cellulosum So ce56]
Length = 420
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 65/134 (48%), Gaps = 2/134 (1%)
Query: 25 PEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRA 84
P G+ + K + T +A+ I+ LG P S GFAG KD+ +++TQ + A
Sbjct: 52 PSGRGEHVFVTFRKTGRTTLDAVRAIALALGADPGSAGFAGMKDRHAITTQTASFQLPLA 111
Query: 85 SKLAALNKR--LIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
A L ++ L GI + L G LLGNRF I LRG+ + + + +G
Sbjct: 112 QDPAPLLEKAELPGIEVLAVARHDNKLKPGHLLGNRFRIALRGIAPAALPLAERRLAEIG 171
Query: 143 RNGFINYFGLQRFG 156
R G N FG QRFG
Sbjct: 172 RAGVPNAFGPQRFG 185
>gi|71756161|ref|XP_828995.1| tRNA pseudouridine synthase [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70834381|gb|EAN79883.1| tRNA pseudouridine synthase, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
Length = 923
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 79/288 (27%), Positives = 117/288 (40%), Gaps = 41/288 (14%)
Query: 29 GKF-LRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKL 87
GKF L+ +L K++ AL I++ L + P AG KD + QRV + Q +
Sbjct: 323 GKFYLQCYLRKQHIAHSVALSNIAQTLRMHPSCISVAGIKDYIGDTLQRVRL--QNVTPA 380
Query: 88 AAL------NKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSL 141
+AL K+ + L DF Y E L G+L GN F I LR V V + I+ + L
Sbjct: 381 SALEANRVFRKKKWAMTLSDFSYHTEPLFPGRLFGNHFKIVLRDVTV-PKTCIQQAVYEL 439
Query: 142 GRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGE---RNEISKAREY 198
+GF NY+G QRF S T+ +L W + L E R + + ++Y
Sbjct: 440 QTHGFPNYYGCQRF-SWFGGTNDAAFAILNQNWLAFAFRFLGYTSRELTLRELLQREKKY 498
Query: 199 YKETDD--IDGTLRKLPRHLVAERAILQC--LKKCP--GNYLQALKAIPRT--------- 243
D +R+L R + E + L CP G L A P +
Sbjct: 499 PNPVQDEYRRNIVRRL-RSIAIEPSELDTAPFLACPSLGAPLTATDGGPVSKKQELILLQ 557
Query: 244 -----------LRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVF 280
R + S+LWN + R+ G + V+ GD+V
Sbjct: 558 LQGAYLDLSVMSRRLTAQRLCSYLWNQVLTLRLHHFGGKEVLEGDMVL 605
>gi|315452784|ref|YP_004073054.1| tRNA pseudouridine synthase D, TruD [Helicobacter felis ATCC 49179]
gi|315131836|emb|CBY82464.1| tRNA pseudouridine synthase D, TruD [Helicobacter felis ATCC 49179]
Length = 372
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 63/121 (52%), Gaps = 2/121 (1%)
Query: 38 KENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLI-- 95
K+++ T E L L S++ G FG+AG KDK++++TQ +++ K A L L+
Sbjct: 59 KKDRSTWEMLSLFSQISGCKMADFGYAGLKDKQAITTQYISLPKIHAPALEKHTPTLLEH 118
Query: 96 GIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQRF 155
GI++ + + LG L GN F + L+ + I+ L GF NYFG QRF
Sbjct: 119 GIKILEISAHSHKIRLGHLKGNHFFMRLKKLKPTDAHKIEQVLGFLKTYGFPNYFGAQRF 178
Query: 156 G 156
G
Sbjct: 179 G 179
>gi|344997187|ref|YP_004799530.1| tRNA pseudouridine synthase D TruD [Caldicellulosiruptor
lactoaceticus 6A]
gi|343965406|gb|AEM74553.1| tRNA pseudouridine synthase D TruD [Caldicellulosiruptor
lactoaceticus 6A]
Length = 388
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 117/241 (48%), Gaps = 16/241 (6%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G++ + L K + +T +AL ISK I G AG KD+ +++ Q ++V ++
Sbjct: 24 GRYKIYLLTKRHWNTVDALRFISKENKIPLEKIGCAGRKDRHALTFQYISVPREYTINFN 83
Query: 89 ALNKR--LIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGF 146
N + LIG DF L+L GN F IT+R + E V++ N + + GF
Sbjct: 84 KENVKVELIGYS-DDFV---SPLILE---GNFFEITIRKLKNKDEKVLR-RLNEVQQFGF 135
Query: 147 INYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDDID 206
NYF QRFGS +G +++ + A+K+ E + K R+ K+ ++
Sbjct: 136 PNYFDDQRFGSTQSEDEFIGEKIVKKHYNGALKLYFTTIHPEDKKEEKQRK--KKISELW 193
Query: 207 GTLRK-LPR-HLVAERAILQCLKKCPGNY--LQALKAIPRTLRMMYVHSYQSFLWNHAAS 262
G K LP ER I++ L K + ++AL IP+ +++ +YQS++WN S
Sbjct: 194 GDFEKILPLCKTKVERDIIKTLLKGKSRHYLIEALNLIPKEEISIFLSAYQSYIWNRTLS 253
Query: 263 A 263
+
Sbjct: 254 S 254
>gi|261334930|emb|CBH17924.1| tRNA pseudouridine synthase, putative [Trypanosoma brucei gambiense
DAL972]
Length = 923
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 79/288 (27%), Positives = 117/288 (40%), Gaps = 41/288 (14%)
Query: 29 GKF-LRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKL 87
GKF L+ +L K++ AL I++ L + P AG KD + QRV + Q +
Sbjct: 323 GKFYLQCYLRKQHIAHSVALSNIAQTLRMHPSCISVAGIKDYIGDTLQRVRL--QNVTPA 380
Query: 88 AAL------NKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSL 141
+AL K+ + L DF Y E L G+L GN F I LR V V + I+ + L
Sbjct: 381 SALEANRVFRKKKWAMTLSDFSYHTEPLFPGRLFGNHFKIVLRDVTV-PKACIQQAVYEL 439
Query: 142 GRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGE---RNEISKAREY 198
+GF NY+G QRF S T+ +L W + L E R + + ++Y
Sbjct: 440 QTHGFPNYYGCQRF-SWFGGTNDAAFAILNQNWLAFAFRFLGYTSRELTLRELLQREKKY 498
Query: 199 YKETDD--IDGTLRKLPRHLVAERAILQC--LKKCP--GNYLQALKAIPRT--------- 243
D +R+L R + E + L CP G L A P +
Sbjct: 499 PNPVQDEYRRNIVRRL-RSIAIEPSELDTAPFLACPSLGAPLTATDGGPVSKKQELILLQ 557
Query: 244 -----------LRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVF 280
R + S+LWN + R+ G + V+ GD+V
Sbjct: 558 LQGAYLDLSVMSRRLTAQRLCSYLWNQVLTLRLHHFGGKEVLEGDMVL 605
>gi|320103317|ref|YP_004178908.1| tRNA pseudouridine synthase D TruD [Isosphaera pallida ATCC 43644]
gi|319750599|gb|ADV62359.1| tRNA pseudouridine synthase D TruD [Isosphaera pallida ATCC 43644]
Length = 485
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 110/256 (42%), Gaps = 15/256 (5%)
Query: 21 SENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVF 80
S + P G+F+ + L K T EAL I + + S G KD+ + + Q +T+
Sbjct: 53 SSDQPIARGEFVLYRLTKIGLGTPEALEAIRRRWNLPRASLSVGGLKDRHARTIQYLTIR 112
Query: 81 KQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANS 140
+ +L L+ + Y GNRF++ LR + D+ + K S
Sbjct: 113 RGPWRRLRQSRLELVPVGTMSRPYGPR-----DFAGNRFSLVLRDLDRDALERAKRGLES 167
Query: 141 LGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL---DP--REGERNEISKA 195
L R+G NYF QRFGS A+ L+G+ A+ + + +P R R+E
Sbjct: 168 LERDGLPNYFDDQRFGSVGFTGEFQAASWLKGDHARALWLAIAQANPLDRPHARHEKELL 227
Query: 196 REYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSF 255
R ++ D LPR R+++ L P ++ A + R + ++QS
Sbjct: 228 RAHWG---DWLAAKAALPRG--HARSLVTYLVDHPEDFRGAFARLRYDDRSIAFSAFQSH 282
Query: 256 LWNHAASARVQKHGTE 271
+WN A ++ ++ H E
Sbjct: 283 IWNLALASWIRHHLPE 298
>gi|448747063|ref|ZP_21728725.1| Pseudouridine synthase, TruD [Halomonas titanicae BH1]
gi|445565223|gb|ELY21334.1| Pseudouridine synthase, TruD [Halomonas titanicae BH1]
Length = 361
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 76/153 (49%), Gaps = 4/153 (2%)
Query: 25 PEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRA 84
PE G+ L + K N+ T + + +S++ G+ PR G++G KD+ +V+ Q ++V
Sbjct: 58 PEAHGEHLWLRVEKRNQTTLDVVNTLSRLCGVTPRDIGYSGMKDRIAVTRQWLSVHLPGR 117
Query: 85 SKLAALNKRL--IGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
L + L +GI + + L G NRF + L G ++SED + + +L
Sbjct: 118 DAPTELEQSLNALGITVVEQARHPRKLKRGVHRTNRFVLRLSGEAIESEDFV-SRWEALC 176
Query: 143 RNGFINYFGLQRFGSGSVPTHLVGATLLRGEWK 175
++G NYFG QRFG A L RG W+
Sbjct: 177 QHGVPNYFGPQRFGPEGRNLQRAEALLNRG-WR 208
>gi|46199469|ref|YP_005136.1| hypothetical protein TTC1167 [Thermus thermophilus HB27]
gi|62901330|sp|Q72IG5.1|TRUD_THET2 RecName: Full=tRNA pseudouridine synthase D; AltName: Full=tRNA
pseudouridine(13) synthase; AltName: Full=tRNA
pseudouridylate synthase D; AltName: Full=tRNA-uridine
isomerase D
gi|46197095|gb|AAS81509.1| conserved hypothetical protein [Thermus thermophilus HB27]
Length = 356
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 70/139 (50%), Gaps = 8/139 (5%)
Query: 25 PEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRA 84
P+ G+ L F L KE + T+E L + +G+ + G AG KDKR+ + Q ++ ++
Sbjct: 41 PKGEGEHLYFLLEKEGRTTREVLEFLRDEVGVPEKEIGVAGLKDKRAKTRQWFSIPRKYE 100
Query: 85 SKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLR---GVVVDSEDVIKASANSL 141
L L L G+RL L G L GNRF I +R G V ++E V+K L
Sbjct: 101 DALCLLEN-LQGVRLLAADLHTNKLRTGHLKGNRFHILIRRPKGGVAEAEAVLK----RL 155
Query: 142 GRNGFINYFGLQRFGSGSV 160
G NY+G QRFG G +
Sbjct: 156 AEKGVPNYYGPQRFGLGGL 174
>gi|419589333|ref|ZP_14125134.1| tRNA pseudouridine synthase D [Campylobacter coli 317/04]
gi|380567734|gb|EIA90234.1| tRNA pseudouridine synthase D [Campylobacter coli 317/04]
Length = 372
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 82/152 (53%), Gaps = 3/152 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L H+ K++ T EAL ++S+ G+ R FG+AG KDK+ + Q +++ K+ S L+
Sbjct: 46 GEHLILHINKKDLTTNEALKILSETSGVKIRDFGYAGLKDKQGSTFQYLSMPKKFESFLS 105
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ + I L F + + L +G L GN F I L+ V+ ++ + +L + GF N
Sbjct: 106 NFSHPKLKI-LEIFTH-ENKLRIGHLKGNTFFIRLKKVLPSHALKLEQALINLDKQGFAN 163
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM 180
YFG QRFG + G +L G+ VKM
Sbjct: 164 YFGYQRFGKFG-DNYKEGLEILCGKKMKNVKM 194
>gi|374636385|ref|ZP_09707957.1| tRNA pseudouridine synthase D TruD [Methanotorris formicicus
Mc-S-70]
gi|373559160|gb|EHP85468.1| tRNA pseudouridine synthase D TruD [Methanotorris formicicus
Mc-S-70]
Length = 315
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 82/165 (49%), Gaps = 8/165 (4%)
Query: 109 LLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRN-GFINYFGLQRFGSGSVPTHLVGA 167
L +G L+GN+FTIT+R + ED +K S N + G NYF QRFGS +
Sbjct: 17 LKIGDLIGNKFTITVRDI--KPEDFLKISGNIGALDYGVPNYFDSQRFGS-VFDRKFIAK 73
Query: 168 TLLRGEWKSAVKMILDP-REGERNEISKAREYY-KETDDIDGTLRKLPRHLVAERAILQC 225
++ G ++ A+K++L ++ E+ I + Y K + + + + ++ + R +
Sbjct: 74 EIILGNYEEALKILLTKYKKSEKKTIKDLKRYINKNWGNWEKCAKYIEKNDIKSRMFVNI 133
Query: 226 LKKCPG--NYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKH 268
+ +Y + K I LR ++V +YQS+LWN ++ +
Sbjct: 134 IDALNSGKSYKEVFKYIDERLRKIFVSAYQSYLWNECIKEVLKDY 178
>gi|51892102|ref|YP_074793.1| hypothetical protein STH964 [Symbiobacterium thermophilum IAM
14863]
gi|51855791|dbj|BAD39949.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
14863]
Length = 384
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 102/237 (43%), Gaps = 24/237 (10%)
Query: 33 RFHLY---KENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAA 89
R+ +Y K+ +T +A+ I++ + P + G KD+ + + Q VT+ L+
Sbjct: 26 RYRVYLLEKKGWNTADAVAAIARARRLPPGRIQYGGKKDRHAHTFQYVTIDHPADHSLST 85
Query: 90 LNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINY 149
RL + Y E + G++L N F +T+R + + + + GF NY
Sbjct: 86 PYYRLKAV-----GYATEPMAPGRVLANHFEVTVRELRPEEAARLVDGVRRVAAAGFPNY 140
Query: 150 FGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILD---PREGERNEISKAREYYKETD--- 203
F QRFGS + + +G W+ A+++ L P E R + K R D
Sbjct: 141 FDDQRFGSFDPRRGFIAEQMAQGRWEQALQIALTHVYPGEKSRAKARKRRLLEAWGDWAT 200
Query: 204 --DIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWN 258
D+ T ER L + PG + AL R + M++ ++Q+FLWN
Sbjct: 201 CLDLAET--------AFERRCFALLAEQPGGFRAALATARREEQEMWLSAWQAFLWN 249
>gi|296123354|ref|YP_003631132.1| tRNA pseudouridine synthase D TruD [Planctomyces limnophilus DSM
3776]
gi|296015694|gb|ADG68933.1| tRNA pseudouridine synthase D TruD [Planctomyces limnophilus DSM
3776]
Length = 432
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 100/238 (42%), Gaps = 15/238 (6%)
Query: 27 QLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASK 86
Q G + + L K + T EA+ I + I + G KD+ +++ Q VT+ +
Sbjct: 45 QGGNYAVYKLTKTSLGTPEAIEAILRRWKIKREHISYGGLKDRHAITQQYVTISRGPRRD 104
Query: 87 LAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGF 146
L N L+ G K+ + GNRF I +R + + SL +
Sbjct: 105 LNQQNFTLV--YQGQ---TKQHFGPTDISGNRFHIVIRDLPRNVAQKYVNLRESLLVDRL 159
Query: 147 INYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMIL-DP----REGERNEISKAREYYKE 201
NYF QRFGS + G ++ A+ + L +P R +R E R+ +
Sbjct: 160 PNYFDDQRFGSLGASREFIAQPWCAGNYERALWLALAEPNPHDRPDDREEKRILRDNWGN 219
Query: 202 TDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNH 259
D L + R R+I+ L P N+ A I LR +++ +YQS+LWNH
Sbjct: 220 WVDCKAKLAQSSR-----RSIVTYLCDHPTNFKNAFALIRVDLRGLFLSAYQSYLWNH 272
>gi|419693408|ref|ZP_14221398.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
LMG 9872]
gi|380672639|gb|EIB87791.1| tRNA pseudouridine synthase D [Campylobacter jejuni subsp. jejuni
LMG 9872]
Length = 372
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 81/152 (53%), Gaps = 3/152 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L H+ K++ T E L ++S+ G+ + FG+ G KDK+ + Q +++ K+ S L+
Sbjct: 46 GEHLILHINKKDLTTNETLKILSEASGVKIKDFGYTGLKDKQGSTFQYLSMPKKFESFLS 105
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
+ + I L F + + L +G L GN F I L+ V+ ++ + +L + GF N
Sbjct: 106 NFSHPKLKI-LEIFTH-ENKLRIGHLKGNSFFIRLKKVLPSDALKLEQALMNLDKQGFAN 163
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKM 180
YFG QRFG + G +LRG+ VKM
Sbjct: 164 YFGYQRFGKFG-DNYKEGLEILRGKKMKNVKM 194
>gi|312621547|ref|YP_004023160.1| tRNA pseudouridine synthase d trud [Caldicellulosiruptor
kronotskyensis 2002]
gi|312202014|gb|ADQ45341.1| tRNA pseudouridine synthase D TruD [Caldicellulosiruptor
kronotskyensis 2002]
Length = 398
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 116/239 (48%), Gaps = 12/239 (5%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
GK+ + L K + +T +AL ISK I G AG KD+ +++ Q ++V ++
Sbjct: 33 GKYKIYLLAKRHWNTVDALRFISKENKIPLEKIGCAGRKDRHALTFQYISVPREYTINFN 92
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
N ++ I D +V +L G N F IT+R + E +++ N + + GF N
Sbjct: 93 KENVKVEFIGYSD-DFVSPLILEG----NFFEITMRKLKNKDEKILQ-RLNEVQQFGFPN 146
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDDIDGT 208
YF QRFGS +G +++ + A+K+ E + K R+ K+ ++ G
Sbjct: 147 YFDDQRFGSTQSEDEFIGEKIVKKHYNGALKLYFTTIHPEDKKEEKERK--KKISELWGD 204
Query: 209 LRK-LPR-HLVAERAILQCLKKCPGNY--LQALKAIPRTLRMMYVHSYQSFLWNHAASA 263
K LP ER I++ L K + ++AL IP+ +++ +YQS++WN S+
Sbjct: 205 FEKILPLCKTKVERDIIKTLLKGNSRHYLIRALNLIPKEEMSIFLSAYQSYIWNRTLSS 263
>gi|386284125|ref|ZP_10061348.1| tRNA pseudouridine synthase D [Sulfurovum sp. AR]
gi|385345028|gb|EIF51741.1| tRNA pseudouridine synthase D [Sulfurovum sp. AR]
Length = 355
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 67/129 (51%), Gaps = 2/129 (1%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L + K+ T E L +IS +GI R G+AG KDK +++ Q +++ + KL
Sbjct: 36 GEHLVLQVRKKELTTWEMLDVISNHVGIRRRDMGYAGLKDKHAMTIQYISLPAKFEEKLK 95
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
A + I++ + +G L GNRF I L+ V+ +D + + + NG N
Sbjct: 96 AFSHD--KIKILSMVLHNNKIRVGHLKGNRFKIRLKKVLGVQKDKLDSVLKWIDENGVPN 153
Query: 149 YFGLQRFGS 157
YFG QRFG+
Sbjct: 154 YFGNQRFGT 162
>gi|335419050|ref|ZP_08550108.1| tRNA pseudouridine synthase D [Salinisphaera shabanensis E1L3A]
gi|334897185|gb|EGM35321.1| tRNA pseudouridine synthase D [Salinisphaera shabanensis E1L3A]
Length = 356
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 68/132 (51%), Gaps = 3/132 (2%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L + K +TQ+A+ +S+ G+ PR GFAG KD+ +V+ Q +++ A L
Sbjct: 49 GEHLWCRIEKTGLNTQDAVQALSRATGVHPRQIGFAGMKDRVAVTRQWLSIAWPIARDLP 108
Query: 89 ALNKR--LIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGF 146
L L GI + + + L G GNRF + LR + D DV++A + G
Sbjct: 109 DLPDLDGLEGIEILEMDRHERKLKRGAHRGNRFVLRLRELAGD-RDVLEADLARVREQGV 167
Query: 147 INYFGLQRFGSG 158
NYFG QRFG G
Sbjct: 168 PNYFGAQRFGHG 179
>gi|254523550|ref|ZP_05135605.1| tRNA pseudouridine synthase D [Stenotrophomonas sp. SKA14]
gi|219721141|gb|EED39666.1| tRNA pseudouridine synthase D [Stenotrophomonas sp. SKA14]
Length = 343
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 67/141 (47%), Gaps = 7/141 (4%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVF--KQRASK 86
G+ L H+ K +T L++ G+ + +AG KD+ +V+TQR +V K+ A
Sbjct: 38 GEHLLLHIRKRGANTVHVAKLLAAWAGLPEMAVSYAGMKDRHAVTTQRFSVHLPKRIAPD 97
Query: 87 LAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGF 146
LAAL I + D + L G L GNRF + LR V D I + G
Sbjct: 98 LAALASDEIEVL--DATWHNRKLQRGALAGNRFKLVLRDVKGDRA-AISERLQQIAERGL 154
Query: 147 INYFGLQRFG--SGSVPTHLV 165
N+FG QRFG G+VP L
Sbjct: 155 PNWFGEQRFGRDGGNVPAALA 175
>gi|188991950|ref|YP_001903960.1| tRNA pseudouridine synthase D [Xanthomonas campestris pv.
campestris str. B100]
gi|226708711|sp|B0RU01.1|TRUD_XANCB RecName: Full=tRNA pseudouridine synthase D; AltName: Full=tRNA
pseudouridine(13) synthase; AltName: Full=tRNA
pseudouridylate synthase D; AltName: Full=tRNA-uridine
isomerase D
gi|167733710|emb|CAP51915.1| tRNA pseudouridine synthase D, probable [Xanthomonas campestris pv.
campestris]
Length = 367
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 74/143 (51%), Gaps = 12/143 (8%)
Query: 16 FDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQ 75
FD+ G G+ L + K ++T +++ GI G+AG KD+ +V+TQ
Sbjct: 35 FDASGE-------GEHLLLSVRKRGQNTAYVAKRLAQWAGIAEMGIGYAGLKDRHAVTTQ 87
Query: 76 RVTVF--KQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDV 133
R +V K+ A L+AL+ +++ + + L G L GNRF +TLR VV D +
Sbjct: 88 RFSVHLPKRIAPDLSALDDD--DMQVVEHTWHNRKLQRGALHGNRFVLTLREVVGD-QTA 144
Query: 134 IKASANSLGRNGFINYFGLQRFG 156
I A +++ G N+FG QRFG
Sbjct: 145 IDARLHAIAARGIPNWFGEQRFG 167
>gi|118474715|ref|YP_891299.1| tRNA pseudouridine synthase D [Campylobacter fetus subsp. fetus
82-40]
gi|261886233|ref|ZP_06010272.1| tRNA pseudouridine synthase D [Campylobacter fetus subsp.
venerealis str. Azul-94]
gi|118413941|gb|ABK82361.1| tRNA pseudouridine synthase D [Campylobacter fetus subsp. fetus
82-40]
Length = 377
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 70/131 (53%), Gaps = 8/131 (6%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTV---FKQRAS 85
G+ L + K+ T EAL ++S+ G R FG+AG KDK ++TQ +++ F+ S
Sbjct: 43 GEHLVVEIQKKGMTTSEALTVLSRQSGAKMRDFGYAGLKDKEGMTTQFISMPAKFENEIS 102
Query: 86 KLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNG 145
K + N +++ I + + +G L N F I L+ V+ +K + ++ +NG
Sbjct: 103 KFSYENLKILSITKHN-----NKIRIGHLKSNSFFIRLKKVLGSEALKLKEALKTIDKNG 157
Query: 146 FINYFGLQRFG 156
+ NYFG QRFG
Sbjct: 158 YPNYFGYQRFG 168
>gi|384427592|ref|YP_005636951.1| tRNA pseudouridine synthase D [Xanthomonas campestris pv. raphani
756C]
gi|341936694|gb|AEL06833.1| tRNA pseudouridine synthase D [Xanthomonas campestris pv. raphani
756C]
Length = 367
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 74/143 (51%), Gaps = 12/143 (8%)
Query: 16 FDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQ 75
FD+ G G+ L + K ++T +++ GI G+AG KD+ +V+TQ
Sbjct: 35 FDASGE-------GEHLLLSVRKRGQNTAYVAKRLAQWAGIAEMGIGYAGLKDRHAVTTQ 87
Query: 76 RVTVF--KQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDV 133
R +V K+ A L+AL+ +++ + + L G L GNRF +TLR VV D +
Sbjct: 88 RFSVHLPKRIAPDLSALDDD--DMQVVEHTWHNRKLQRGALHGNRFVLTLREVVGD-QAA 144
Query: 134 IKASANSLGRNGFINYFGLQRFG 156
I A +++ G N+FG QRFG
Sbjct: 145 IDARLHAIAARGIPNWFGEQRFG 167
>gi|71663588|ref|XP_818785.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70884055|gb|EAN96934.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 651
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 73/284 (25%), Positives = 124/284 (43%), Gaps = 39/284 (13%)
Query: 4 NSKKRKERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGF 63
+++ R++R + D S G F + K + D + L+S+ + +
Sbjct: 259 STRHREKRARDDVDDASS-------GLFTHLVVRKRDLDMMKLRLLLSRQFDVSENAVCT 311
Query: 64 AGTKDKRSVSTQRVTV---FKQRASKLA-ALNKRLIG----------IRLGDFCYVKEGL 109
AG KDK +V+ QR +V + SK+ RL+ ++L + C G+
Sbjct: 312 AGLKDKCAVTYQRCSVPLSTQNSKSKVQHGETVRLVWPGDPSSYAEILQLLEPCATPVGI 371
Query: 110 LLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFGS--GSVPTHLVGA 167
GQL GN F++ L V + + + NGF+NYFG QRF S H VG
Sbjct: 372 --GQLNGNWFSVRLVDVRGMAFCELVQRVRLIESNGFLNYFGQQRFSEHVSSTKDH-VGV 428
Query: 168 TLLRGEWKSAVKMILDPREG------ERNEISKAREYYKETDDIDGTLRKLPRHLVAERA 221
L+ G W AV+ IL G ER ++ + ++ + L++L R A +
Sbjct: 429 HLMAGRWAEAVQSILSCVPGIYASFPERMKVRYVQTGARDAVYVVKALQRLHRTQYASPS 488
Query: 222 ILQCL---KKCPGNYLQ----ALKAIPRTLRMMYVHSYQSFLWN 258
C+ C + Q AL ++P +R ++V++ QS ++N
Sbjct: 489 NPLCMDDVANCTSRWQQLCHDALLSVPYNIRALWVNAAQSLIFN 532
>gi|34557593|ref|NP_907408.1| tRNA pseudouridine synthase D [Wolinella succinogenes DSM 1740]
gi|37088082|sp|P59893.1|TRUD_WOLSU RecName: Full=tRNA pseudouridine synthase D; AltName: Full=tRNA
pseudouridine(13) synthase; AltName: Full=tRNA
pseudouridylate synthase D; AltName: Full=tRNA-uridine
isomerase D
gi|34483310|emb|CAE10308.1| hypothetical protein WS1227 [Wolinella succinogenes]
Length = 361
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 73/145 (50%), Gaps = 3/145 (2%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G+ L + K N T E + ++S LGI R G+AG KDK +++ Q +++ + KL
Sbjct: 37 GEHLVLKIRKRNLSTFELVDILSSHLGIKSREIGYAGLKDKSALTLQHLSIPAKFGDKLE 96
Query: 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFIN 148
A + +++ + + + +G L GNRF I L+ + + I+ + R G N
Sbjct: 97 AFDHP--EVKILEQVRHENKIRIGHLKGNRFFIRLKKLSPLNSLKIQGVLEEIKRWGIPN 154
Query: 149 YFGLQRFGSGSVPTHLVGATLLRGE 173
YFG QRFG+ H +G + GE
Sbjct: 155 YFGYQRFGNDG-NNHEIGRKIAHGE 178
>gi|152992853|ref|YP_001358574.1| tRNA pseudouridine synthase D [Sulfurovum sp. NBC37-1]
gi|151424714|dbj|BAF72217.1| tRNA pseudouridine synthase D [Sulfurovum sp. NBC37-1]
Length = 362
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 5/133 (3%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G FL + K + T + + +++K G+ R G+AG KDK + + Q +++ K+ +L
Sbjct: 39 GNFLILKIKKTDMSTWKLVTVLAKATGLQERDIGYAGLKDKNATTIQYISLPKRYEKEL- 97
Query: 89 ALNKRLIG--IRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGF 146
NK L + + + Y K + +G L GNRF+I L + +A + +G
Sbjct: 98 --NKNLTTERVEILERTYNKAPIKIGHLKGNRFSIVLHKINEKDAKFFNTTAKKMQVDGI 155
Query: 147 INYFGLQRFGSGS 159
NY+G QRFG S
Sbjct: 156 PNYYGYQRFGEDS 168
>gi|313144477|ref|ZP_07806670.1| tRNA pseudouridine synthase D [Helicobacter cinaedi CCUG 18818]
gi|313129508|gb|EFR47125.1| tRNA pseudouridine synthase D [Helicobacter cinaedi CCUG 18818]
Length = 375
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 73/134 (54%), Gaps = 2/134 (1%)
Query: 25 PEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRA 84
P G+ L ++ K+ T E L L S++LGI R G+AG KDK + + Q +++ +
Sbjct: 35 PSGNGEHLLIYVRKKGLSTFEMLELFSQILGIKVRDIGYAGLKDKAATTYQYISIPRHLE 94
Query: 85 SKLAALNKRLI--GIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLG 142
S+L ++ L I++ + L +G L GN F + L+ ++ + ++++ +
Sbjct: 95 SRLNLISPILQEHNIKILNLHAHNNKLKIGHLKGNEFFMRLKKLLPHNATKLESTLELIA 154
Query: 143 RNGFINYFGLQRFG 156
++GF NYFG QRFG
Sbjct: 155 QSGFPNYFGDQRFG 168
>gi|407420090|gb|EKF38460.1| tRNA pseudouridine synthase, putative [Trypanosoma cruzi
marinkellei]
Length = 966
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 68/131 (51%), Gaps = 9/131 (6%)
Query: 31 FLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAAL 90
+L+ +L+K + AL I++ L + P AG KD + QRV + + + AAL
Sbjct: 370 YLQCYLHKRHVAHSVALANIAQTLRMHPSGISVAGIKDYIGDTIQRVRL--KNITPAAAL 427
Query: 91 N-KRLIGIR-----LGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRN 144
R ++ L DF Y E L+ G+L GN F I LR V EDV +A ++ ++
Sbjct: 428 EANRFFRMKKWSMTLSDFSYQNEPLVPGRLFGNHFRIVLREVTAAREDVERA-LHAFEQH 486
Query: 145 GFINYFGLQRF 155
GF NY+G QRF
Sbjct: 487 GFPNYYGCQRF 497
>gi|291243445|ref|XP_002741613.1| PREDICTED: pseudouridylate synthase 7 homolog [Saccoglossus
kowalevskii]
Length = 331
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 48/78 (61%), Gaps = 8/78 (10%)
Query: 4 NSKKRKERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGF 63
NSK RK + +RG WP+ + F LYKENKDT +A+ LISK+L F F
Sbjct: 262 NSKGRKSQ------NRG--GWPKDCPNYCCFVLYKENKDTMDAINLISKLLRKPSHLFSF 313
Query: 64 AGTKDKRSVSTQRVTVFK 81
AGTKDKR+++ Q +T ++
Sbjct: 314 AGTKDKRAITVQELTAYR 331
>gi|312135877|ref|YP_004003215.1| tRNA pseudouridine synthase d trud [Caldicellulosiruptor owensensis
OL]
gi|311775928|gb|ADQ05415.1| tRNA pseudouridine synthase D TruD [Caldicellulosiruptor owensensis
OL]
Length = 386
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 115/241 (47%), Gaps = 16/241 (6%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G++ + L K + +T +AL ISK I G AG KD+ +++ Q ++V ++
Sbjct: 24 GRYKIYLLTKRHWNTVDALRFISKRNNIPLEKIGCAGRKDRHALTFQYISVPREYTVDFN 83
Query: 89 ALN--KRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGF 146
N + IG DF L+L GN F IT+R + E +++ N + + GF
Sbjct: 84 KENVKTQFIGYS-DDFV---SPLILE---GNFFEITIRKLKNKDEKILR-RLNEVQKFGF 135
Query: 147 INYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDDID 206
NYF QRFGS +G +++ + A+K+ E + K R+ K+ ++
Sbjct: 136 PNYFDDQRFGSTQNEDEFIGEKIVKKHYNGALKLYFTTIHPEDKKEEKERK--KKISELW 193
Query: 207 GTLRK-LPR-HLVAERAILQCLKKCPGNY--LQALKAIPRTLRMMYVHSYQSFLWNHAAS 262
G K LP ER I++ L K + ++AL IP+ +++ +YQS++WN
Sbjct: 194 GDFEKILPLCKTKVERDIIKTLLKGKSRHYLIEALNLIPKEEMSIFLSAYQSYIWNRTLI 253
Query: 263 A 263
A
Sbjct: 254 A 254
>gi|71403686|ref|XP_804618.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70867684|gb|EAN82767.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 547
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 113/259 (43%), Gaps = 32/259 (12%)
Query: 29 GKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88
G F + K + D + L+S+ + + AG KDK +V+ QR +V + +
Sbjct: 277 GLFTHLVVRKRDLDMMKLRLLLSRQFDVSENAVCTAGLKDKCAVTYQRCSVPLSTQNSKS 336
Query: 89 ALNK----RLIG----------IRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVI 134
+ RL+ ++L + C G+ GQL GN F++ L V + +
Sbjct: 337 RVQHGETVRLVWPGDPSSYAEILQLLEPCSTPVGI--GQLNGNWFSVRLVDVRGMTFCEL 394
Query: 135 KASANSLGRNGFINYFGLQRFGS--GSVPTHLVGATLLRGEWKSAVKMILDPREG----- 187
+ NGF+NYFG QRF S H VG L+ G W AV+ IL G
Sbjct: 395 VQRVRHIESNGFLNYFGQQRFSEHVSSTKDH-VGVHLMAGRWAEAVQSILSCVPGIYASF 453
Query: 188 -ERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCL---KKCPGNYLQ----ALKA 239
ER ++ + ++ + L++L R A + C+ C + Q AL +
Sbjct: 454 PERMKVRYVQTSARDAVYVVKALQRLHRTQYASSSNPLCMDDVANCTSRWQQLCHDALLS 513
Query: 240 IPRTLRMMYVHSYQSFLWN 258
+P +R+++V++ QS ++
Sbjct: 514 VPYNIRVLWVNAAQSLIFT 532
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.133 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,324,434,039
Number of Sequences: 23463169
Number of extensions: 356572250
Number of successful extensions: 887190
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 1080
Number of HSP's that attempted gapping in prelim test: 879562
Number of HSP's gapped (non-prelim): 4615
length of query: 532
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 385
effective length of database: 8,910,109,524
effective search space: 3430392166740
effective search space used: 3430392166740
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 79 (35.0 bits)