Query 009530
Match_columns 532
No_of_seqs 226 out of 855
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 07:16:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009530.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009530hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z2z_A Probable tRNA pseudouri 100.0 2.2E-96 8E-101 789.6 34.8 397 12-526 27-437 (446)
2 1szw_A TRNA pseudouridine synt 100.0 3.6E-77 1.2E-81 624.8 22.9 286 12-410 43-335 (379)
3 1sgv_A TRNA pseudouridine synt 50.1 1.3E+02 0.0046 30.2 11.7 102 33-141 8-110 (316)
4 2aus_C Pseudouridine synthase; 36.9 66 0.0022 32.6 7.2 48 32-81 47-95 (334)
5 2apo_A Probable tRNA pseudouri 30.9 93 0.0032 31.8 7.2 48 32-81 67-115 (357)
6 2x4i_A CAG38848, uncharacteriz 28.1 46 0.0016 28.6 3.6 44 104-153 5-48 (114)
7 1r3e_A TRNA pseudouridine synt 27.7 1.2E+02 0.0041 30.4 7.2 96 33-141 5-106 (309)
8 2fho_A Spliceosomal protein SF 25.2 15 0.00052 26.7 0.0 24 326-358 18-41 (47)
9 1k8w_A TRNA pseudouridine synt 25.0 1.4E+02 0.0049 30.1 7.1 96 33-141 27-128 (327)
10 2j6b_A AFV3-109; sulfolobus, c 22.9 52 0.0018 28.1 2.9 44 104-153 3-46 (109)
No 1
>1z2z_A Probable tRNA pseudouridine synthase D; alpha-beta protein., structural genomics, PSI, protein structure initiative; 2.60A {Methanosarcina mazei}
Probab=100.00 E-value=2.2e-96 Score=789.56 Aligned_cols=397 Identities=28% Similarity=0.436 Sum_probs=342.5
Q ss_pred CCCCCCCCCCcCC---CCCCCCEEEEEEEEcccCHHHHHHHHHHHhCCCCcceeecccccCCceEEEEEEEecCChhhHH
Q 009530 12 GDNPFDSRGSENW---PEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLA 88 (532)
Q Consensus 12 ~~~~~~~~~~~~w---p~~~g~y~~f~L~K~n~dT~~ai~~Lar~l~i~~~~~~~AG~KDkrAvT~Q~vsv~~~~~~~l~ 88 (532)
...|.|+...+.. |.+.|+|++|+|+|+|+||++|++.||+.|||++++|+|||||||||||+|||||++..++++.
T Consensus 27 k~~peDF~V~Ei~~~~~~g~G~~l~f~l~K~n~dT~~a~~~Lak~lgi~~~~i~yAG~KDk~AvT~Q~~sv~~~~~~~l~ 106 (446)
T 1z2z_A 27 RQEIEDFIVKEITNREEGEEGKYLIVELTKRDWDTHHLTRTLSRILQVSQKRISVAGTKDKRALTTQKISIFDTDASEIE 106 (446)
T ss_dssp CSSGGGEEEEEEECCCCBSCSSEEEEEEEEESCCHHHHHHHHHHHHTCCGGGEEESSCCCSSSEEEEEEEEETCCHHHHT
T ss_pred EecCCCceEEeeecCCCCCCCCEEEEEEEEcCCCHHHHHHHHHHHhCcChHhEeECccccCCeeEEEEEEEECCCHHHHh
Confidence 4557777766543 3678999999999999999999999999999999999999999999999999999999988887
Q ss_pred HHhccCCCeEEccEEEeecCCCCCCCCCCEEEEEEecCCCCCHH---HHHHHHHhhcccc-ccccccCCCcCCCCCChHH
Q 009530 89 ALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSED---VIKASANSLGRNG-FINYFGLQRFGSGSVPTHL 164 (532)
Q Consensus 89 ~ln~~l~~i~vg~~~~~~~~L~lG~L~GN~F~I~LR~v~~~~~~---~i~~~l~~l~~~G-FiNYFG~QRFGs~~~~th~ 164 (532)
.+| +.+++|++++|++++|++|+|.||+|+|+||+|...+.+ .|+++++.|+++| ||||||+||||+.+.+||+
T Consensus 107 ~l~--~~~i~i~~~~~~~~~L~lG~L~GN~F~I~LR~v~~~~~~~~~~i~~~l~~l~~~G~fpNYFG~QRFG~~~~~t~~ 184 (446)
T 1z2z_A 107 KIH--LKDIELKVLGRSRKSVELGDLWGNDFRITVRNIENSPEETEALLKKTTDEILAQGGVPNFFGIQRFGSVRPVTHL 184 (446)
T ss_dssp SCC--CTTEEEEEEEEESSCCCTTCEEEEEEEEEEEEESSCHHHHHHHHHHHHHHHHHHTEEECCCCTTTTCSSSCCHHH
T ss_pred hcc--cCCeEEEEEEEecCCCCCCcCCCCEEEEEEecCCccchhhHHHHHHHHHHHHhcCCcceeccccccCCCCCCcHH
Confidence 776 789999999999999999999999999999999865433 8999999999999 9999999999999889999
Q ss_pred HHHHHHhhcHHHHHHHhcC-CCCCCchhHHHHHHHHHhcCCHHHHHHhCCcchHHHHHHHHHHhhCCCChHHhhhcCChh
Q 009530 165 VGATLLRGEWKSAVKMILD-PREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRT 243 (532)
Q Consensus 165 iG~~lL~g~~~~Av~liL~-p~~~~~~~~~~ar~~~~~~gd~~~al~~~p~~~~~Er~iL~~L~~~~~~~~~Al~~iPr~ 243 (532)
||++||+|+|++|+++||. |.+.+.+...+||+.|.++||+++||+.||+++.+||.||++|.+++++|.+|++.||++
T Consensus 185 iG~~ll~g~~~~Av~lil~~~~~~e~~~~~~ar~~~~~~gd~~~al~~~p~~~~~Er~iL~~L~~~~~~~~~A~~~ipr~ 264 (446)
T 1z2z_A 185 VGKAIVEGNFEKAALLYIAEPFPEEPEETKNARQFVKDTLDFKEGLKTYPLRLGHERAMMNHLIANPEDYSGSFRVLPQN 264 (446)
T ss_dssp HHHHHHHTCHHHHHHHHHSCCCTTSCTTHHHHHHHHHHHCCHHHHHHHSCTTCHHHHHHHHHHHHSTTCGGGGGTTSCHH
T ss_pred HHHHHHcCCHHHHHHHHhcCCCcccCHHHHHHHHHHHHcCCHHHHHHHCcchhHHHHHHHHHHHhccccHHHHHHhCCHH
Confidence 9999999999999999996 778888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-cCCCccccCcEEEecCCCCcccccCCCCcccccCCCCCCCCCCCCCCCCCCCCCC
Q 009530 244 LRMMYVHSYQSFLWNHAASARVQK-HGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDG 322 (532)
Q Consensus 244 lr~myvhAYQSylwN~~~S~Ri~~-~G~~~vv~GDLV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 322 (532)
+|+||||||||||||++||+||+. +++++|++||+|+..+..... . + .
T Consensus 265 lr~myv~AyQS~lfN~~lS~Ri~~~~~~~~~~~GDlv~~~~~~~~p-------~----~-~------------------- 313 (446)
T 1z2z_A 265 LYRMFVHGYQSYIYNIILCRRIEAGIPLNRAVEGDIVCFRNEVGLP-------D----S-S------------------- 313 (446)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCSSSCCTTCCEECBCSSSCB-------C----S-S-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcCcccccceEeeccccCCc-------c----c-C-------------------
Confidence 999999999999999999999998 477789999999986542100 0 0 0
Q ss_pred CccceeeehhhhhcC----CCccccceeeecCCCCCCCCcchHHHHHHHHHhhcCCChhhhh-hhhhhcccccccccccc
Q 009530 323 RHNLVKTVTAADINS----GKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESL-HNVKEFSITSMTGNYRR 397 (532)
Q Consensus 323 ~~~~v~~lt~edi~~----~~yti~DVvLPLPG~~v~yP~n~~~~~y~eiL~edGl~~~~~~-~~~k~~~~~~l~G~YR~ 397 (532)
.+..+|+++++. -.+.+.|||+||||+++.||.|+++++|+++|+++|+++++|. ..++.++ ++|+||+
T Consensus 314 ---~~~~~~~~~~~~~~~~~~~~~~~v~lPLpG~~~~~p~~~~~~~~~~il~~~gl~~~~f~~~~~~~~~---~~g~~R~ 387 (446)
T 1z2z_A 314 ---KTEKVTSETVNAMNRLLKLGRAFITAPLPGYNTEFASGIPGEIENGVLKELGVSLEGFNIEKFPEMS---SKGTRRE 387 (446)
T ss_dssp ---SCCCCCTTTHHHHHHHHTTTSCEEBCCBCSSSCCCCCSHHHHHHHHHHHHTTCCGGGSSCSSCGGGC---CCCBCCB
T ss_pred ---ceeeechhhHHHHHHHHhcCCceEEEeecCCCCCCCchHHHHHHHHHHHHcCCChHHcccccccccC---cCCCcce
Confidence 011112222110 1235789999999999999999999999999999999998885 3455666 9999999
Q ss_pred ccccccceeEEEEEecCCCCccccchHHHHhhcccchhhhhhhhhcCCCCCCCCccccccccchhhhcccccchhhhhhh
Q 009530 398 VFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAKLVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAK 477 (532)
Q Consensus 398 li~~P~dl~~~~~~y~d~~~~l~~tDld~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (532)
++++|.|++ .+ .+| .+ .
T Consensus 388 l~~~p~~l~-~~-----------~~d--~~------------------------------------------~------- 404 (446)
T 1z2z_A 388 VLLEVKPKF-EA-----------GED--EL------------------------------------------N------- 404 (446)
T ss_dssp SEEECCCBC-CE-----------EEC--TT------------------------------------------S-------
T ss_pred eeecccccc-cc-----------ccc--ee------------------------------------------e-------
Confidence 999999998 11 011 00 0
Q ss_pred hccCCccccccCCCCccceeEEEEEEecCCcchhhHHHHHHhccCccHh
Q 009530 478 EVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVA 526 (532)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~al~l~f~Lp~ssYATmalREl~k~~ts~~ 526 (532)
. ...+|+|+|+||+||||||+||||||.+||..
T Consensus 405 -----------~-----~~~~l~L~F~Lp~GsYAT~~LREl~k~~~~~~ 437 (446)
T 1z2z_A 405 -----------P-----GKSKAVLEFMLPKGSYATTVLREYMKVNPLQM 437 (446)
T ss_dssp -----------T-----TCEEEEEBCEEETTCCTHHHHHHHHCCCTTTC
T ss_pred -----------c-----CCCEEEEEEEcCCccHHHHHHHHHhCCCcchh
Confidence 0 13589999999999999999999999999864
No 2
>1szw_A TRNA pseudouridine synthase D; novel fold, RNA modification, TRUD, structural proteomics in europe, spine, structural genomics; 2.00A {Escherichia coli} SCOP: d.265.1.4 PDB: 1si7_A 1sb7_A
Probab=100.00 E-value=3.6e-77 Score=624.76 Aligned_cols=286 Identities=24% Similarity=0.331 Sum_probs=233.4
Q ss_pred CCCCCCCCCCc---CCCCCCCCEEEEEEEEcccCHHHHHHHHHHHhCCCCcceeecccccCCceEEEEEEEe--cCChhh
Q 009530 12 GDNPFDSRGSE---NWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVF--KQRASK 86 (532)
Q Consensus 12 ~~~~~~~~~~~---~wp~~~g~y~~f~L~K~n~dT~~ai~~Lar~l~i~~~~~~~AG~KDkrAvT~Q~vsv~--~~~~~~ 86 (532)
...|.|+...+ .||.+.|+|++|+|+|+|+||++|++.||+.+||++++|+|||+|||||||+|||||+ +...++
T Consensus 43 K~~peDF~V~Ei~~~~~~g~G~~l~~~l~K~n~~T~~a~~~Lak~lgi~~~~i~yAGlKDk~AvT~Q~~sv~~p~~~~~~ 122 (379)
T 1szw_A 43 KANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPD 122 (379)
T ss_dssp SSSGGGEEEEEECSSCCCSCSSEEEEEEEESSSCHHHHHHHHHHHTTCCGGGEEESCCCCTTSEEEEEEEEECCSSCCCC
T ss_pred EeCCCCcEEEeecCCCCCCCcCEEEEEEEEcCCCHHHHHHHHHHHhCcCHHhEeECccccCCEEEEEEEEEEeCCcChhh
Confidence 45677777664 3678999999999999999999999999999999999999999999999999999986 444555
Q ss_pred HHHHhccCCCeEEccEEEeecCCCCCCCCCCEEEEEEecCCCCCHHHHHHHHHhhccccccccccCCCcCCCCCChHHHH
Q 009530 87 LAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVG 166 (532)
Q Consensus 87 l~~ln~~l~~i~vg~~~~~~~~L~lG~L~GN~F~I~LR~v~~~~~~~i~~~l~~l~~~GFiNYFG~QRFGs~~~~th~iG 166 (532)
+..++ +.+++|+++.|++++|++|+|.||+|+|+||+|. +.+.++++++.|++.|||||||+||||+.+
T Consensus 123 l~~l~--~~~i~i~~~~~~~~kL~lG~L~GN~F~I~LR~v~--~~~~i~~~l~~l~~~GfpNYFG~QRFG~~~------- 191 (379)
T 1szw_A 123 LSAFQ--LEGCQVLEYARHKRKLRLGALKGNAFTLVLREVS--NRDDVEQRLIDICVKGVPNYFGAQRFGIGG------- 191 (379)
T ss_dssp GGGCC--CTTEEEEEEEEESSCCCTTCCCEEEEEEEEBSCS--CHHHHHHHHHHHHHHCEECCCCGGGGCGGG-------
T ss_pred HHhcc--cCCeEEEEEEeecCCcCCccCCCCEEEEEEecCC--CHHHHHHHHHHHHhCCccccChhhhCCCcC-------
Confidence 65554 7899999999999999999999999999999996 578999999999999999999999999864
Q ss_pred HHHHhhcHHHHHHHhcCCCCCCchhHHHHHHHHHhcCCHHHHHHhCCcchHHHHHHHHHHhhCCCChHHhhhcCChhHHH
Q 009530 167 ATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRM 246 (532)
Q Consensus 167 ~~lL~g~~~~Av~liL~p~~~~~~~~~~ar~~~~~~gd~~~al~~~p~~~~~Er~iL~~L~~~~~~~~~Al~~iPr~lr~ 246 (532)
++|++|..++.. .++.||+++|+
T Consensus 192 -----~n~~~a~~~~~~----------------------------------------------------~~~~ipr~lr~ 214 (379)
T 1szw_A 192 -----SNLQGAQRWAQT----------------------------------------------------NTPVRDRNKRS 214 (379)
T ss_dssp -----HHHHHHHHHHC-----------------------------------------------------------CHHHH
T ss_pred -----chHHHHHHHHhh----------------------------------------------------chhcCCHHHHH
Confidence 566655444321 14568999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCccccCcEEEecCCCCcccccCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCccc
Q 009530 247 MYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNL 326 (532)
Q Consensus 247 myvhAYQSylwN~~~S~Ri~~~G~~~vv~GDLV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 326 (532)
||||||||||||++||+||+.+|+++|++||+|+..+... .|..+.. ++
T Consensus 215 ~yv~AyQS~lfN~~lS~Ri~~~g~~~~v~GDlv~~~~~~~---------~f~~~~~---------------~~------- 263 (379)
T 1szw_A 215 FWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGS---------WFVATTE---------------EL------- 263 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSTTCCCTTCEEEETTSSC---------EEECCGG---------------GH-------
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCceeCCcEEEecCCCc---------eeeeccc---------------cH-------
Confidence 9999999999999999999999988899999999875421 1110000 00
Q ss_pred eeeehhhhhcCCCccccc--eeeecCCCCCCCCcchHHHHHHHHHhhcCCChhhhhhhhhhccccccccccccccccccc
Q 009530 327 VKTVTAADINSGKYTIDD--VVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMD 404 (532)
Q Consensus 327 v~~lt~edi~~~~yti~D--VvLPLPG~~v~yP~n~~~~~y~eiL~edGl~~~~~~~~~k~~~~~~l~G~YR~li~~P~d 404 (532)
++ ....|++.| |++||||+++.||.++++++|+++|+++|++++.|. .++ ++|+||+++++|.|
T Consensus 264 -----~~--~~~r~~~~di~~t~PLpG~~~~~~~~~~~~~e~~iL~~~g~~~~~f~----~~~---~~g~rR~l~~~P~d 329 (379)
T 1szw_A 264 -----AE--LQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLV----REK---VEAARRAMLLYPQQ 329 (379)
T ss_dssp -----HH--HHHHHHTTSEEEEEEECCBSCCSCCHHHHHHHHHHTTTCHHHHHHHH----HTT---CBCEEEESEECCEE
T ss_pred -----HH--HHHHHhcCCccEEeccCCCCCcCCchHHHHHHHHHHHhcccchhhHh----hcC---CCCcceeEEEeccc
Confidence 00 012333444 699999999999999999999999999999876653 345 89999999999999
Q ss_pred eeEEEE
Q 009530 405 FEWELL 410 (532)
Q Consensus 405 l~~~~~ 410 (532)
++|++.
T Consensus 330 l~~~~~ 335 (379)
T 1szw_A 330 LSWNWW 335 (379)
T ss_dssp EEEEEE
T ss_pred cEEEEe
Confidence 999875
No 3
>1sgv_A TRNA pseudouridine synthase B; hinged motion, tRNA modification, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} SCOP: b.122.1.1 d.265.1.2
Probab=50.10 E-value=1.3e+02 Score=30.19 Aligned_cols=102 Identities=14% Similarity=0.103 Sum_probs=63.6
Q ss_pred EEEEEEc-ccCHHHHHHHHHHHhCCCCcceeecccccCCceEEEEEEEecCChhhHHHHhccCCCeEEccEEEeecCCCC
Q 009530 33 RFHLYKE-NKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLL 111 (532)
Q Consensus 33 ~f~L~K~-n~dT~~ai~~Lar~l~i~~~~~~~AG~KDkrAvT~Q~vsv~~~~~~~l~~ln~~l~~i~vg~~~~~~~~L~l 111 (532)
.+.|.|- |++..+++..+-+.++. +.++.+||=|..|--+--|++-+-. ++...-..........+.+-. .=.-
T Consensus 8 il~vdKP~G~TS~dvv~~vrr~l~~--kKvGH~GTLDP~AtGvL~i~iG~aT--Kl~~~l~~~~K~Y~~~~~lG~-~TdT 82 (316)
T 1sgv_A 8 IVVIDKPAGMTSHDVVGRCRRIFAT--RRVGHAGTLDPMATGVLVIGIERAT--KILGLLTAAPKSYAATIRLGQ-TTST 82 (316)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTC--SCEEESSCCCTTCEEEEEEEEGGGG--GGGGGTTTSCEEEEEEEEETE-EETT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc--ccccccccCCCCCeEEEEEEECHHH--hHHHHhCcCCcEEEEEEEECC-ccCC
Confidence 6788886 99999999999999986 5899999999999999999985432 322211001111111111100 0023
Q ss_pred CCCCCCEEEEEEecCCCCCHHHHHHHHHhh
Q 009530 112 GQLLGNRFTITLRGVVVDSEDVIKASANSL 141 (532)
Q Consensus 112 G~L~GN~F~I~LR~v~~~~~~~i~~~l~~l 141 (532)
.|..|.-- .-+++..-+.+.|++++.++
T Consensus 83 ~D~eG~v~--~~~~~~~~t~~~i~~~l~~f 110 (316)
T 1sgv_A 83 EDAEGQVL--QSVPAKHLTIEAIDAAMERL 110 (316)
T ss_dssp SBTTSCEE--EECCCTTCCHHHHHHHHHHT
T ss_pred CCCCCCEE--EecCCCCCCHHHHHHHHHhc
Confidence 57777733 23344333567788887776
No 4
>2aus_C Pseudouridine synthase; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_A 3lwo_A* 3lwq_A* 3lwp_A 3lwv_A 3hax_A* 2hvy_A* 3hay_A* 2ey4_A 2rfk_A 3mqk_A 3hjw_A* 3hjy_A
Probab=36.89 E-value=66 Score=32.61 Aligned_cols=48 Identities=21% Similarity=0.304 Sum_probs=43.0
Q ss_pred EEEEEEEc-ccCHHHHHHHHHHHhCCCCcceeecccccCCceEEEEEEEec
Q 009530 32 LRFHLYKE-NKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFK 81 (532)
Q Consensus 32 ~~f~L~K~-n~dT~~ai~~Lar~l~i~~~~~~~AG~KDkrAvT~Q~vsv~~ 81 (532)
=.+.++|- |++..+++..|-+.++. +.++.+||-|..|.-+--|++-+
T Consensus 47 Gil~vdKP~g~tS~~vv~~vr~~~~~--~KvGH~GTLDP~atGvL~v~~g~ 95 (334)
T 2aus_C 47 GVINLDKPPGPTSHEVVAWIKRILNL--EKAGHGGTLDPKVSGVLPVALER 95 (334)
T ss_dssp EEEEEEECSSSCHHHHHHHHHHHTTC--SCEEESSCCCTTCEEEEEEEEGG
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCc--ceeccccccCCccceeEEEEeCh
Confidence 47888886 99999999999999986 58999999999999999999854
No 5
>2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: b.122.1.1 d.265.1.2
Probab=30.94 E-value=93 Score=31.85 Aligned_cols=48 Identities=19% Similarity=0.221 Sum_probs=42.9
Q ss_pred EEEEEEEc-ccCHHHHHHHHHHHhCCCCcceeecccccCCceEEEEEEEec
Q 009530 32 LRFHLYKE-NKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFK 81 (532)
Q Consensus 32 ~~f~L~K~-n~dT~~ai~~Lar~l~i~~~~~~~AG~KDkrAvT~Q~vsv~~ 81 (532)
=.+.|+|- |++..+++..|-+.+++ +.++.+||-|..|.-+--|++-+
T Consensus 67 Gil~vdKP~G~TS~~vv~~vr~~l~~--~KvGH~GTLDP~AtGvL~v~~G~ 115 (357)
T 2apo_A 67 GVVVVDKPRGPTSHEVSTWVKKILNL--DKAGHGGTLDPKVTGVLPVALER 115 (357)
T ss_dssp EEEEEEECSSSCHHHHHHHHHHHTTC--SCEEESSCCCTTCEEEEEEEEGG
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCc--cccccccccCCCceeEEEEEeCH
Confidence 37888886 99999999999999986 58999999999999999999843
No 6
>2x4i_A CAG38848, uncharacterized protein 114; unknown function, DUF1874, archeal virus; 2.20A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=28.07 E-value=46 Score=28.60 Aligned_cols=44 Identities=11% Similarity=0.196 Sum_probs=34.8
Q ss_pred EeecCCCCCCCCCCEEEEEEecCCCCCHHHHHHHHHhhccccccccccCC
Q 009530 104 YVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQ 153 (532)
Q Consensus 104 ~~~~~L~lG~L~GN~F~I~LR~v~~~~~~~i~~~l~~l~~~GFiNYFG~Q 153 (532)
|--..+.+..|.|-.+.|.++.++ ++++-+.+.+.+|+|+-|.|
T Consensus 5 YLlN~fsl~ml~~~~~~i~~~~is------~~EAk~~v~~~~~iSaIGH~ 48 (114)
T 2x4i_A 5 YLANAFSINMLTKFPTKVVIDKID------RLEFCENIDNEDIINSIGHD 48 (114)
T ss_dssp EEESCCCGGGBCSSSEEEEEEEEC------HHHHHHHHCCTTEEECCCCH
T ss_pred EEecccccccccCCceEEEEecCC------HHHHHHHhcccCeEEeeccH
Confidence 455667888999999999999997 23455666789999999876
No 7
>1r3e_A TRNA pseudouridine synthase B; RNA modification, pseudouridylation, lyase-RNA complex; HET: FHU; 2.10A {Thermotoga maritima} SCOP: b.122.1.1 d.265.1.2 PDB: 1ze2_A* 2ab4_A* 1ze1_A
Probab=27.74 E-value=1.2e+02 Score=30.43 Aligned_cols=96 Identities=21% Similarity=0.267 Sum_probs=62.2
Q ss_pred EEEEEEc-ccCHHHHHHHHHHHhCCCCcceeecccccCCceEEEEEEEecCChhhHHHHhccCCC-----eEEccEEEee
Q 009530 33 RFHLYKE-NKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIG-----IRLGDFCYVK 106 (532)
Q Consensus 33 ~f~L~K~-n~dT~~ai~~Lar~l~i~~~~~~~AG~KDkrAvT~Q~vsv~~~~~~~l~~ln~~l~~-----i~vg~~~~~~ 106 (532)
.+.|+|- |++..+++..|-+.++. +.++.+||=|..|--+--|++-+.. ++...-..... +++| ...
T Consensus 5 il~vdKP~G~TS~~vv~~vrr~l~~--kKvGH~GTLDP~AtGvL~i~iG~aT--Kl~~~l~~~~K~Y~a~~~lG---~~T 77 (309)
T 1r3e_A 5 ILVAYKPKGPTSHDVVDEVRKKLKT--RKVGHGGTLDPFACGVLIIGVNQGT--RILEFYKDLKKVYWVKMRLG---LIT 77 (309)
T ss_dssp EEEEEECSSSCHHHHHHHHHHHTTC--SCEEESSCCCTTCEEEEEEEEGGGG--GGGGGGTTSCEEEEEEEEET---EEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc--ceecccccCCCCcceeEEEEECHHH--hHHHHhCccCcEEEEEEEEC---Ccc
Confidence 6778886 99999999999999975 5899999999999999999985432 32221100111 2222 111
Q ss_pred cCCCCCCCCCCEEEEEEecCCCCCHHHHHHHHHhh
Q 009530 107 EGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSL 141 (532)
Q Consensus 107 ~~L~lG~L~GN~F~I~LR~v~~~~~~~i~~~l~~l 141 (532)
.-+|..|.-- .-+++. -+.+.|++++.++
T Consensus 78 ---dT~D~eG~v~--~~~~~~-~t~~~i~~~l~~f 106 (309)
T 1r3e_A 78 ---ETFDITGEVV--EERECN-VTEEEIREAIFSF 106 (309)
T ss_dssp ---SSSBTTSCEE--EECCCC-CCHHHHHHHHHSS
T ss_pred ---cCCCCCCCEE--EEecCC-CCHHHHHHHHHhc
Confidence 2356777632 223333 2567788877766
No 8
>2fho_A Spliceosomal protein SF3B155; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.22 E-value=15 Score=26.66 Aligned_cols=24 Identities=17% Similarity=0.495 Sum_probs=18.6
Q ss_pred ceeeehhhhhcCCCccccceeeecCCCCCCCCc
Q 009530 326 LVKTVTAADINSGKYTIDDVVLPLPGSRVIYPM 358 (532)
Q Consensus 326 ~v~~lt~edi~~~~yti~DVvLPLPG~~v~yP~ 358 (532)
+-+.+|.|+++ ..|| +||.+.-|.
T Consensus 18 rnrpltDEeLD--------~~LP-~GY~il~pP 41 (47)
T 2fho_A 18 RNRPLSDEELD--------AMFP-EGYKVLPPP 41 (47)
T ss_dssp CCCCSCTTHHH--------HHSC-TTEEECCCC
T ss_pred ccCCCCHHHHH--------HhCC-CCCeecCCC
Confidence 44678999884 7899 899877654
No 9
>1k8w_A TRNA pseudouridine synthase B; protein-RNA complex, T stem-loop, lyase/RNA complex; HET: FHU; 1.85A {Escherichia coli} SCOP: b.122.1.1 d.265.1.2 PDB: 1zl3_A* 1r3f_A
Probab=24.99 E-value=1.4e+02 Score=30.15 Aligned_cols=96 Identities=18% Similarity=0.145 Sum_probs=62.6
Q ss_pred EEEEEEc-ccCHHHHHHHHHHHhCCCCcceeecccccCCceEEEEEEEecCChhhH-HHHhccCC----CeEEccEEEee
Q 009530 33 RFHLYKE-NKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKL-AALNKRLI----GIRLGDFCYVK 106 (532)
Q Consensus 33 ~f~L~K~-n~dT~~ai~~Lar~l~i~~~~~~~AG~KDkrAvT~Q~vsv~~~~~~~l-~~ln~~l~----~i~vg~~~~~~ 106 (532)
.+.|+|- |++..+++..+-+.++. +.++.+||=|..|--+--|++-+.. ++ ..+....+ -+++| ...
T Consensus 27 il~vdKP~G~TS~dvv~~vr~~l~~--kKvGH~GTLDP~AtGvL~i~~G~aT--Kl~~~l~~~~K~Y~a~~~lG---~~T 99 (327)
T 1k8w_A 27 VLLLDKPQGMSSNDALQKVKRIYNA--NRAGHTGALDPLATGMLPICLGEAT--KFSQYLLDSDKRYRVIARLG---QRT 99 (327)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTC--SCEEESSCCCTTCEEEEEEEEGGGG--GGTHHHHTSCEEEEEEEEET---EEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhhcc--ceeccCCCCCCCCeeEEEEEECHHH--hHHHHhccCCcEEEEEEEEC---Ccc
Confidence 7888886 99999999999999975 5899999999999999888885432 22 22221111 12233 111
Q ss_pred cCCCCCCCCCCEEEEEEecCCCCCHHHHHHHHHhh
Q 009530 107 EGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSL 141 (532)
Q Consensus 107 ~~L~lG~L~GN~F~I~LR~v~~~~~~~i~~~l~~l 141 (532)
.-.|..|.-- .-+++. -+.+.|++++.++
T Consensus 100 ---dT~D~eG~v~--~~~~~~-~t~e~i~~~l~~f 128 (327)
T 1k8w_A 100 ---DTSDADGQIV--EERPVT-FSAEQLAAALDTF 128 (327)
T ss_dssp ---SSSBTTSCEE--EECCCC-CCHHHHHHHHHTT
T ss_pred ---cCCCCCCCEE--eecCCC-CCHHHHHHHHHhc
Confidence 2356677532 223332 2567788887766
No 10
>2j6b_A AFV3-109; sulfolobus, crenarchaea, viral protein; 1.3A {Acidianus filamentous virus 1} SCOP: d.321.1.1 PDB: 2j6c_A
Probab=22.86 E-value=52 Score=28.09 Aligned_cols=44 Identities=16% Similarity=0.348 Sum_probs=32.6
Q ss_pred EeecCCCCCCCCCCEEEEEEecCCCCCHHHHHHHHHhhccccccccccCC
Q 009530 104 YVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQ 153 (532)
Q Consensus 104 ~~~~~L~lG~L~GN~F~I~LR~v~~~~~~~i~~~l~~l~~~GFiNYFG~Q 153 (532)
|--....+..+.|-.+.|.++.++ . +++-+.|.+.+|+|+-|.|
T Consensus 3 YllNsfsl~m~~g~~~~v~~~~Is---~---~Ea~~~l~~~~~vSaIGH~ 46 (109)
T 2j6b_A 3 YILNSAILPLKPGEEYTVKAKEIT---I---QEAKELVTKEQFTSAIGHQ 46 (109)
T ss_dssp EEESSCCCCBCSSSCCCEEEEEEC---H---HHHHHHHHHSCEEECBCSH
T ss_pred EEecccccccCCCCceEEEEeeCC---H---HHHHHHhcccceEEeeccH
Confidence 334456777888999999999996 2 3344555678999998876
Done!