Query 009533
Match_columns 532
No_of_seqs 207 out of 933
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 14:16:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009533.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009533hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1300 Vesicle trafficking pr 100.0 6.4E-96 1E-100 753.8 41.7 481 17-531 2-490 (593)
2 PF00995 Sec1: Sec1 family; I 100.0 2.6E-77 5.5E-82 657.7 36.8 456 43-531 1-472 (564)
3 COG5158 SEC1 Proteins involved 100.0 2.2E-73 4.7E-78 599.0 42.9 479 16-529 2-492 (582)
4 KOG1302 Vacuolar sorting prote 100.0 6.1E-74 1.3E-78 593.2 36.1 474 11-530 10-512 (600)
5 KOG1299 Vacuolar sorting prote 100.0 3.4E-68 7.4E-73 530.4 35.4 464 19-530 4-476 (549)
6 KOG1301 Vesicle trafficking pr 100.0 4.7E-64 1E-68 506.7 35.6 442 15-475 9-473 (621)
7 PF14071 YlbD_coat: Putative c 60.7 8.2 0.00018 33.5 2.8 14 306-319 32-45 (124)
8 cd04752 Commd4 COMM_Domain con 24.8 1.1E+02 0.0024 28.3 4.4 27 446-472 59-85 (174)
9 CHL00123 rps6 ribosomal protei 22.6 3.2E+02 0.0069 22.6 6.3 25 82-106 4-30 (97)
10 KOG0011 Nucleotide excision re 20.1 3.3E+02 0.0071 27.9 6.8 96 362-479 216-312 (340)
No 1
>KOG1300 consensus Vesicle trafficking protein Sec1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.4e-96 Score=753.82 Aligned_cols=481 Identities=43% Similarity=0.690 Sum_probs=429.5
Q ss_pred hHHHHHHHHHHHHHHHhccCCCCCCCeEEEEEeccchhhhhhccCchhhhhcCccEEEeccCCCCCCCCCceEEEecCCH
Q 009533 17 NFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTK 96 (532)
Q Consensus 17 sl~~~~r~~ll~~~l~~v~~~~~~~~~KvLVlD~~~~~ils~~~~~s~L~e~gV~~v~~l~~~r~~~~~~~aIY~i~Pt~ 96 (532)
+|+++++++++.++++ +.+ .+.|||||+|+.+++++|+||+|++++++||++|+.|++.|+|+|.++|||||+||.
T Consensus 2 ~l~~l~~~kil~~v~~-~~k---~g~wkVLi~Dk~~~~ilss~~km~~i~~egIt~ve~i~~~ReP~~SmeaIY~i~pt~ 77 (593)
T KOG1300|consen 2 GLKELVKKKILEDVLR-VEK---KGEWKVLVVDKLTMRILSSCCKMSEILEEGITIVEDINKRREPLPSMEAIYFITPTE 77 (593)
T ss_pred chHHHHHHHHHHHhcc-cCC---CCeeEEEEecchHHHHHHHHHHHHHHHHcCceeeeeccccCCCCCcceeEEEecCch
Confidence 4899999999988887 433 347999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCcceEEEEecCCCCHHHHHHHHhcCCcccccceeeEEecceeecCCCceEecCcchhhhhhCCCC
Q 009533 97 ENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEE 176 (532)
Q Consensus 97 ~~i~~i~~d~~~~~~~y~~~~i~F~~~~p~~~~e~l~~~~~~~~~i~~i~e~~ldf~ple~~lfsl~~p~~~~~l~~~~~ 176 (532)
++|+++++||....|+|+.+||||++.||+++++.+.. ..+.+.|++++|+|++|+|+|+++|+++.|++|..+|++.
T Consensus 78 ~~V~~~i~Df~~~~~~Y~~ahifF~~~c~~~lf~~l~k-s~~a~~i~tlkeinl~F~p~ESqvF~~~~~~~~~~~y~~~- 155 (593)
T KOG1300|consen 78 ESVDCLIKDFEGRSPLYKAAHIFFLDPCPDPLFNKLSK-SRAAKKIKTLKEINLAFIPYESQVFTLDSPDAFLQLYSPD- 155 (593)
T ss_pred hhHHHHHHhhcccCcccceEEEEEcCCCCHHHHHHHHh-hhHhhhhhhheecccccceecceeeeecChhhHHHhcCch-
Confidence 99999999997667899999999999999999999985 4578899999999999999999999999999999999976
Q ss_pred CccchHHHHHHHHHHHHHHHHHhCCCcEEEEccCCCccccccccccchHHHHHHHHHHHHHHHhhhhCCCCCCCCCeeEE
Q 009533 177 NSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQTETCDLL 256 (532)
Q Consensus 177 ~~~~~~~~l~~ia~~L~~l~~~lg~~P~Ir~~g~~~~~~~~~~~~~~~l~~~la~~l~~~l~~~~~~~~~~~~~~~~~Li 256 (532)
+......+++.+|.+|++||+++|++|.|||++.....+ +.+|.++|+++++.++.|+.+.+.+|..+++.||
T Consensus 156 ~a~~~~~~l~~~a~~I~tvCatL~e~P~vRy~~~~~~~a-------s~l~~~va~~l~~~~~~~~~~~~~~p~~~~seLl 228 (593)
T KOG1300|consen 156 NAAIIDANLEKIADQIATVCATLGEYPNVRYRGDFARNA-------SELAQKVAAKLWDAYKAYKPSIGNGPQKTRSELL 228 (593)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHhCcCcceeeccccccCH-------HHHHHHHHHHHHHHHHhcccccCCCCCcccceEE
Confidence 566677899999999999999999999999999865443 3789999999999999998766777887899999
Q ss_pred EecCCCCcccccchhhhhhHHHhhhcccCCCeEEEeccCCCCCCCcceeEecCCCChHHHHhhcccHHHHHHHHHHHHHH
Q 009533 257 ILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADASERLHEKMTS 336 (532)
Q Consensus 257 IlDR~~D~iTPLlh~~TYqali~dll~I~~~~v~~~~~~~~g~~~~~k~~~L~~~D~l~~e~R~~hi~~v~~~l~~~~~~ 336 (532)
|+||++|++||+||+||||||+||+++|+||+|.|+.+..+|++ +|+++|+++|++|.++||+||++|++.|++++++
T Consensus 229 IlDRs~D~iaPlLHE~TyqAM~~DLl~iend~Y~ye~~g~~g~~--kk~vllde~D~~WveLRH~HIadvse~l~~~~k~ 306 (593)
T KOG1300|consen 229 ILDRSFDPVAPLLHEFTYQAMAYDLLPIENDVYRYETPGKSGEK--KKEVLLDEDDDLWVELRHKHIADVSERLTKKMKN 306 (593)
T ss_pred EEeccccccchHHHHHHHHHHHHHHHhhcCCEEEEecCCCCCCc--cceeecccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999886555533 7889999999999999999999999999999999
Q ss_pred HHHHhHHHHhhhcccCCCCCCHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHhhcCCC-ChH
Q 009533 337 FISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDA-GLK 415 (532)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~s~~em~~~v~~Lp~~~~~~~~l~~H~~la~~i~~~~~~~~l~~~~~lEQ~l~~g~~-~~k 415 (532)
|.++++.+.. +++..|++||+++|++||+|+++..++++|++||++||+.++. ++.+++.+||+|++|.+ ..+
T Consensus 307 f~~~nk~~~~-----~~k~~S~kDL~~mv~~lpqy~k~~~Kls~Hl~LA~eC~~~~~~-~L~~l~~iEQDLa~G~Daeg~ 380 (593)
T KOG1300|consen 307 FSSKNKRLQT-----KSKETSTKDLSKMVKKLPQYQKELDKLSLHLELAEECMKKFQE-GLEKLGAIEQDLATGTDAEGE 380 (593)
T ss_pred HHhhhhhhhc-----cccccchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccCCcccc
Confidence 9998875432 3446899999999999999999999999999999999999987 99999999999999954 322
Q ss_pred -------HHHHhhhcCCCCChhhHHHHHHHHHHhCCCCCCchHHHHHHHHcCCChhHHHHHHHHHHhcCccccCCCCCCC
Q 009533 416 -------DVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTGA 488 (532)
Q Consensus 416 -------~l~~~i~~~~~~~~~dkLRLl~Ly~l~~~~gi~~~~~~~llq~~gl~~~~~~~l~nL~~lGl~~~~~~~~~~~ 488 (532)
.+++.+. ...++..||+|++++|.+. ++|+...++.+|++|.|++.+++.++.|+..+|....++..
T Consensus 381 kik~~~~~~~p~l~-~~~~~~~dklR~Illy~~~-~~Gi~ee~l~kL~~~~~i~~~~~~ii~~~~~~~~~~~~~~~---- 454 (593)
T KOG1300|consen 381 KIKDSLRDLLPILL-ESNVRLLDKLRLILLYIFE-RKGIIEENLAKLLQHAGISVEEMQIIQNLHILGVPVTKDSF---- 454 (593)
T ss_pred cHHHHHHhhhhhhc-ccCchHHHHHHHHHHHHHh-cCCccHHHHHHHhcccCCCchHHHHHhhHHHhCCccccCcc----
Confidence 3444444 4678999999999999997 58999999999999999999999999999999999876532
Q ss_pred ccccccccccccccccccCCCCCccccccccccccchhhhhhc
Q 009533 489 FSLKFDINKKKRAVRKDRTGEEQTWQLSRFYPMIEVHPKLVFS 531 (532)
Q Consensus 489 ~~~~f~~~k~~~~~~k~~~~~~~~y~~Sry~P~i~~lv~~~~~ 531 (532)
+ .|.+++.+++|. .+.+|++|||+|.|++|+|.+|.
T Consensus 455 -~-----~k~~~~~rker~-~e~tyqlSR~~P~Ik~ilE~~i~ 490 (593)
T KOG1300|consen 455 -L-----LKFDPPERKERV-EEQTYQLSRWVPVIKNILEKLIE 490 (593)
T ss_pred -c-----ccCCCCcccccc-ccceeeeeeeehHHHHHHHHHHh
Confidence 1 233445578885 89999999999999999999873
No 2
>PF00995 Sec1: Sec1 family; InterPro: IPR001619 Sec1-like molecules have been implicated in a variety of eukaryotic vesicle transport processes including neurotransmitter release by exocytosis []. They regulate vesicle transport by binding to a t-SNARE from the syntaxin family. This process is thought to prevent SNARE complex formation, a protein complex required for membrane fusion. Whereas Sec1 molecules are essential for neurotransmitter release and other secretory events, their interaction with syntaxin molecules seems to represent a negative regulatory step in secretion []. ; GO: 0006904 vesicle docking involved in exocytosis, 0016192 vesicle-mediated transport; PDB: 3C98_A 3PUJ_B 1FVH_A 1FVF_A 1EPU_A 2XHE_A 1MQS_A 2PJX_A 3PUK_A 1Y9J_A.
Probab=100.00 E-value=2.6e-77 Score=657.66 Aligned_cols=456 Identities=30% Similarity=0.543 Sum_probs=352.7
Q ss_pred eEEEEEeccchhhhhhccCchhhhhcCccEEEeccCCCCCCCCCceEEEecCCHHHHHHHHHHhccCCCCcceEEEEecC
Q 009533 43 WKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSGRSPLYKKAFVFFSS 122 (532)
Q Consensus 43 ~KvLVlD~~~~~ils~~~~~s~L~e~gV~~v~~l~~~r~~~~~~~aIY~i~Pt~~~i~~i~~d~~~~~~~y~~~~i~F~~ 122 (532)
|||||+|+.++++||++|++++|+++||+.++.|++.|+|+|+.+|||||+|+.+++++|++|++. +.|++|||+|++
T Consensus 1 wKvLi~D~~~~~ils~~~~~~~L~~~gV~~i~~l~~~r~~~~~~~~iy~i~p~~~~i~~i~~~~~~--~~~~~~~i~f~~ 78 (564)
T PF00995_consen 1 WKVLILDKSTLKILSSLCSMSDLLEHGVTLIEKLENKREPMPSMDAIYFIRPTPENIKRIIKDLKN--PPYRSYHIFFTP 78 (564)
T ss_dssp -EEEEE-HHHHHHHHCCS-HHHHHTTTEEEEEETTS--S-BTTSEEEEEE-S-HHHHHHHHHHCHS--TSBSEEEEEESS
T ss_pred CEEEEECcccHHHHHhhcCHHHHHHcCCceEeeccchhhcCCCcceEEEEcCcHHHHHHHHHHHHh--cccccEEEEEeh
Confidence 999999999999999999999999999999999999999999999999999999999999999985 789999999999
Q ss_pred CCCHHHHHHHHhcCCcccccceeeEEecceeecCCCceEecCcchhhhhhC-CCCCccchHHHHHHHHHHHHHHHHHhCC
Q 009533 123 PISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFG-DEENSRRGDACLNVMASRIATVFASLRE 201 (532)
Q Consensus 123 ~~p~~~~e~l~~~~~~~~~i~~i~e~~ldf~ple~~lfsl~~p~~~~~l~~-~~~~~~~~~~~l~~ia~~L~~l~~~lg~ 201 (532)
.+++.+++.|+++ ++.+.|.++.|++++|+|+|+|+|||++|.+|..+|. +++ .+.++.+|++|+++|.++|.
T Consensus 79 ~~~~~~~~~l~~~-~~~~~i~~i~e~~~~~~pld~d~fsl~~~~~~~~~~~~~~~-----~~~l~~~a~~L~~l~~~~g~ 152 (564)
T PF00995_consen 79 RVSESLLEILAES-GVLGRIKSIKEFNLDFIPLDSDLFSLEIPNSFSDLYSSDGD-----ESSLQRIADSLLSLQLTLGE 152 (564)
T ss_dssp ---HHHHHHHHHS-CGGGGEEEEEETT--SEEECTTEEEES-TCHHHHHHSTTGH-----HHHHHHHHHHHHHHHHHTT-
T ss_pred hhhhHHHHhhhhc-CccceecccccceeEEEEccchhhhhcccchHHHHhccccc-----hhHHHHHHHHHHHHHHHhCC
Confidence 9999999999874 6899998899999999999999999999999999999 666 68899999999999999999
Q ss_pred CcEEEEccCCCccccccccccchHHHHHHHHHHHHHHH----hhhhCCCCC---CCCCeeEEEecCCCCcccccchhhhh
Q 009533 202 FPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMK----YKQSIENFP---QTETCDLLILDRSVDQVAPIIHEWTY 274 (532)
Q Consensus 202 ~P~Ir~~g~~~~~~~~~~~~~~~l~~~la~~l~~~l~~----~~~~~~~~~---~~~~~~LiIlDR~~D~iTPLlh~~TY 274 (532)
+|.|||+|+. .|+++|+.+.+.+.+ +....+.++ ..++++|||+||++|++|||||||||
T Consensus 153 ~p~I~~~g~~-------------~a~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LiIlDR~~D~iTPll~~~TY 219 (564)
T PF00995_consen 153 IPNIRYKGNS-------------NAKRVAELLQKKLQENEDNFSSSNPDFPPGSSFERPLLIILDRSVDLITPLLHQWTY 219 (564)
T ss_dssp --EEEE-TTC-------------HHHHHHHHHHHHHHHHHTTHCHCSTTTT-SCSCCSEEEEEEEGGG-SSTTTS---BH
T ss_pred CCeEEEeCch-------------hHHHHHHHHHHHhhhccccccccccccCCccccCCceEEEecccccccchhhcCcee
Confidence 9999999982 256666666666655 333333333 23368999999999999999999999
Q ss_pred hHHHhhhcccCCCeEEEeccCCCCCCCcceeEecCCCChHHHHhhcccHHHHHHHHHHHHHHHHHHhHHHHhhhcccCCC
Q 009533 275 DAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADASERLHEKMTSFISKNKAAQIQHSARDGG 354 (532)
Q Consensus 275 qali~dll~I~~~~v~~~~~~~~g~~~~~k~~~L~~~D~l~~e~R~~hi~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 354 (532)
|||+||+|||++|.|+++.+...| ..++++.|+++|++|+++||+||++|++.|.++++++++++ .. ..++
T Consensus 220 e~li~d~~~i~~~~v~~~~~~~~~--~~~~~~~L~~~D~~~~~~r~~~~~~v~~~l~~~~~~~~~~~-~~------~~~~ 290 (564)
T PF00995_consen 220 EGLIDDLFGINNNKVEIPDEINSG--ENKKKVVLNSNDPFFNEIRHLHFSEVGEKLNKKAKELKEEY-EK------SRSK 290 (564)
T ss_dssp HHHHHHHSTEBTTEEEEEECSSSS--ECEEEEE-STTCTCHHHHTTSBCHHHHHHHHHHHHHHHHHC-H----------S
T ss_pred eeEHHhhhhhcCCEeccccCCCcc--ccceeEecCCCCHHHHHHHhhCHHHHHHHHHHHHHHHHHhh-cc------ccch
Confidence 999999999999999998743333 12478999999999999999999999999999999998654 10 1246
Q ss_pred CCCHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHhhcCCCCh----HHHHHhhhcCCCCChh
Q 009533 355 ELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAGL----KDVVKFFTTNEDVSRE 430 (532)
Q Consensus 355 ~~s~~em~~~v~~Lp~~~~~~~~l~~H~~la~~i~~~~~~~~l~~~~~lEQ~l~~g~~~~----k~l~~~i~~~~~~~~~ 430 (532)
..++++|++||++||+++++++.++.|++||++|++.+++++|.+++++||+|++|.+.. +.+.++|. +...+..
T Consensus 291 ~~~~~~~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~~Eq~i~~~~~~~~~~~~~i~~~i~-~~~~~~~ 369 (564)
T PF00995_consen 291 SKSIQEMKEFVKKLPELQEQQKSLSLHTNIAEEILKIIKKRNLDELIELEQDIASGEDSDGELLQYIEELIN-SRKISIE 369 (564)
T ss_dssp TTTHHCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHSCHTTSHB-SCHHHHHH-STTSTHH
T ss_pred hhHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhCCccchhhHHHHHHHhh-ccCCCHH
Confidence 789999999999999999999999999999999999999999999999999999997543 24888885 3678999
Q ss_pred hHHHHHHHHHHhCCCCCCch---HHHHHHHHcCCChhHHHHHHHHHHhcCccccCCC-CCCCcccccccccccccccccc
Q 009533 431 NKLRLLMILAAIYPEKFQGE---KGQNIMKLARLQSDDITAVNNMRLLGGASDIKKS-STGAFSLKFDINKKKRAVRKDR 506 (532)
Q Consensus 431 dkLRLl~Ly~l~~~~gi~~~---~~~~llq~~gl~~~~~~~l~nL~~lGl~~~~~~~-~~~~~~~~f~~~k~~~~~~k~~ 506 (532)
++|||+|||+++. |++.. .+++++.++|++.+++.++.||+++|+...+.+. ........|..-.+........
T Consensus 370 d~LRLl~L~sl~~--g~~~~~~~~l~~~l~~~~~g~~~l~~l~~L~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 447 (564)
T PF00995_consen 370 DKLRLLCLYSLTN--GIKGKDYDQLKKLLLQAGYGIEALQLLNNLEKLGLLKSKDNSSNFQSIRKKLNLISKFNDKNDKN 447 (564)
T ss_dssp HHHHHHHHHHHHH---HTCBHHHHHHHHHHHTT--HCHHHHHHHGGGGTHHCBSHTTS--CTTC-TT---HHTTCCCSSS
T ss_pred HHHHHHHHHHHHh--cCCcchHHHHHHHhhhcCCChHHHHHHHHHHHhcchhhccCccchhhhccccccccccccccccc
Confidence 9999999999983 55543 4566666666666999999999999999877310 0001111111100001111122
Q ss_pred CCCCCccccccccccccchhhhhhc
Q 009533 507 TGEEQTWQLSRFYPMIEVHPKLVFS 531 (532)
Q Consensus 507 ~~~~~~y~~Sry~P~i~~lv~~~~~ 531 (532)
.+.+.+|.+|||+|+++++||.++.
T Consensus 448 ~~~~~~~~~~~y~Pli~rlve~~~~ 472 (564)
T PF00995_consen 448 NPKDISYVYSGYAPLIVRLVEDLIK 472 (564)
T ss_dssp SCSCCCSTTCT---HHHHHHHHHHT
T ss_pred ccccccchhcccccHHHHHHHHHhh
Confidence 4788999999999999999999863
No 3
>COG5158 SEC1 Proteins involved in synaptic transmission and general secretion, Sec1 family [Intracellular trafficking and secretion]
Probab=100.00 E-value=2.2e-73 Score=599.02 Aligned_cols=479 Identities=22% Similarity=0.408 Sum_probs=386.8
Q ss_pred hhHHHHHHHHHHHHHHHhccCCCCCCCeEEEEEeccchhhhhhccCchhhhhcCccEEEeccCCCCCCCCCceEEEecCC
Q 009533 16 KNFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPT 95 (532)
Q Consensus 16 ~sl~~~~r~~ll~~~l~~v~~~~~~~~~KvLVlD~~~~~ils~~~~~s~L~e~gV~~v~~l~~~r~~~~~~~aIY~i~Pt 95 (532)
.++++.++.+|+ +++..|.+. ..|||||+|..+..+||+|+++++|++|||+.++.|+++|+|.++.+|||||+||
T Consensus 2 ~dl~e~q~~~i~-~~i~~v~~~---n~~KvLllD~~t~~ils~~~~~s~lle~~I~~~~~i~~~R~~~~~~~aiy~v~pt 77 (582)
T COG5158 2 MDLLELQKNKIL-DEIFLVQPA---NIWKVLLLDKDTTSILSSLITTSELLEHGITLVDLIENKREPISDLPAIYFVRPT 77 (582)
T ss_pred ccHHHHHHHHHH-HHHHhcCCC---cceEEEEEecchHHHHHhhcchHHHHhcCceEEEeecCCCCCCCCCCEEEEEcCc
Confidence 458999999998 588888653 3699999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCcceEEEEecCCCCHHHHHHHHhcCCcccccceeeEEecceeecCCCceEecCcchhhhhhCCC
Q 009533 96 KENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDE 175 (532)
Q Consensus 96 ~~~i~~i~~d~~~~~~~y~~~~i~F~~~~p~~~~e~l~~~~~~~~~i~~i~e~~ldf~ple~~lfsl~~p~~~~~l~~~~ 175 (532)
.+++++|++|+.+..|.|..+|++|++.++..+++.+++ .++...|..+.++++||+|+|+++|++++|..|...+.+.
T Consensus 78 ~e~i~~i~~D~~~~~~~Y~~~~~~f~~~~~~~l~e~l~e-s~~~~~i~~V~e~~ldf~~le~dlfsl~~p~~~~~~~~~~ 156 (582)
T COG5158 78 KENIDLILEDLEQWDPFYLNYHISFLNTVTESLLELLAE-SGVFEKILSVYEIYLDFFVLESDLFSLNLPESFLESSLPS 156 (582)
T ss_pred hHHHHHHHHHHhccCccccceeEEecccchHHHHHHHhh-cCchhheeeeeeeecceEEechHhHhhcCchhhhhhcCCC
Confidence 999999999998656899999999999999999998886 5778889999999999999999999999999999888864
Q ss_pred CCccchHHHHHHHHHHHHHHHHHhCCCcEEEEccCCCccccccccccchHHHHHHHHHHHHHHHhhhhCCCCCC---CCC
Q 009533 176 ENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQ---TET 252 (532)
Q Consensus 176 ~~~~~~~~~l~~ia~~L~~l~~~lg~~P~Ir~~g~~~~~~~~~~~~~~~l~~~la~~l~~~l~~~~~~~~~~~~---~~~ 252 (532)
. ...+-.++.+|+++|.++|++|.|||.++. .|.++|+++...+.......-+++. +.+
T Consensus 157 ~-----~~~~~~~v~gl~S~~~slg~~P~Ir~~~~~-------------~a~~~ak~l~~~~~~~~~~~~~~~~~~~~~~ 218 (582)
T COG5158 157 T-----TEALIKIVNGLFSLCVSLGRIPIIRYSGGK-------------NAEHMAKKLSDEIRNELSINFDGVVSKNPLR 218 (582)
T ss_pred c-----hHHHHHHHhhHHHHHhhcCCcceEEecCCc-------------hHHHHHHHHHHHHHHHHHhhcccccccCCCC
Confidence 3 234448999999999999999999998863 2455555555444422222212211 247
Q ss_pred eeEEEecCCCCcccccchhhhhhHHHhhhcccCCCeEEEeccCCCCCCCcceeEecCCCChHHHHhhcccHHHHHHHHHH
Q 009533 253 CDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADASERLHE 332 (532)
Q Consensus 253 ~~LiIlDR~~D~iTPLlh~~TYqali~dll~I~~~~v~~~~~~~~g~~~~~k~~~L~~~D~l~~e~R~~hi~~v~~~l~~ 332 (532)
++|||+||+.|++|||+|+||||||+||+++|++|.|+++.....| .++|...++.+|++|.++||+||.+|+++|.+
T Consensus 219 ~~LIIlDRs~D~iTPlLh~wTYqaml~Dl~~~~~~~v~~~~~~~~g--~~kk~~~~~~~D~~w~~~k~~~f~~v~e~l~~ 296 (582)
T COG5158 219 PILIILDRSLDPITPLLHQWTYQAMLHDLLGINNNIVTIPSSSVNG--PEKKFSLSDKDDPFWNDNKFLNFGEVGEKLKK 296 (582)
T ss_pred ceEEEEecCCCcccchHHHHHHHHHHHHHHHhhcCeEEeccccccc--ccceeccCCcccHhHHHhccCchhhHHHHHHH
Confidence 8999999999999999999999999999999999999997654444 55666667789999999999999999999999
Q ss_pred HHHHHHHHhHHHHhhhcccCCCCCCHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHhhcCCC
Q 009533 333 KMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDA 412 (532)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~s~~em~~~v~~Lp~~~~~~~~l~~H~~la~~i~~~~~~~~l~~~~~lEQ~l~~g~~ 412 (532)
.+++++.+++. .. ...+.|+.||++||.+||++++.++.+.+|++||++|++++++++|.++.++||++.++.+
T Consensus 297 ~~~~l~~~~~~--~~----~~~~~s~~dik~~v~~lpel~~~~~~l~~H~~l~~e~l~~~~~~~l~~f~eIEq~l~~~~~ 370 (582)
T COG5158 297 LAKELKTKAQL--RH----KENAKSVNDIKEFVDKLPELQKRSRSLNKHLTLASELLKVVEERYLDDFSEIEQNLSTGND 370 (582)
T ss_pred HHHHHHHHHhh--hh----hhhcccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Confidence 99999987652 21 1235799999999999999999999999999999999999999999999999999998875
Q ss_pred Ch---HHHHHhhhcCCCCChhhHHHHHHHHHHhCCCCC-CchHHHHHHHHcCCChhHHHHHHHHHHhcCccccCCCCC--
Q 009533 413 GL---KDVVKFFTTNEDVSRENKLRLLMILAAIYPEKF-QGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSST-- 486 (532)
Q Consensus 413 ~~---k~l~~~i~~~~~~~~~dkLRLl~Ly~l~~~~gi-~~~~~~~llq~~gl~~~~~~~l~nL~~lGl~~~~~~~~~-- 486 (532)
.. .+++++++. +....+||||+|||+++. +|+ .+.+..+++.+-|++.+++..+.+|..+|....++....
T Consensus 371 ~~~~i~Dli~~l~~--~~~E~~klRllilysL~~-~~~~~~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~s~ 447 (582)
T COG5158 371 VKSDISDLIELLES--GVEEDDKLRLLILYSLTK-DGLIKDIDELRLLRIQGYGIEALNFFQRLKELGFLTLKDSKTISL 447 (582)
T ss_pred chhhHHHHHHHHhc--CchHHHHHHHHHHHHHhc-CcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhhhhccccccc
Confidence 43 355555542 233336999999999987 563 333456677777888899999999999999876653211
Q ss_pred --CCccccccccccccccccc-cCCCCCccccccccccccchhhhh
Q 009533 487 --GAFSLKFDINKKKRAVRKD-RTGEEQTWQLSRFYPMIEVHPKLV 529 (532)
Q Consensus 487 --~~~~~~f~~~k~~~~~~k~-~~~~~~~y~~Sry~P~i~~lv~~~ 529 (532)
|.....|.-. ...+..++ +...+..+.+++|.|..++++...
T Consensus 448 ~~g~~d~l~~~~-n~y~~s~~~~~~~~~~~v~~~~iP~~k~~~~~~ 492 (582)
T COG5158 448 KRGDKDSLFQWF-NTYSLSREHQGVPDLENVYSGLIPLKKDIPIDL 492 (582)
T ss_pred ccCCcccccCcc-cccccccccCCCchHHHHHHhhcchhcccchhh
Confidence 1100001000 00111111 235678899999999999887543
No 4
>KOG1302 consensus Vacuolar sorting protein VPS33/slp1 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.1e-74 Score=593.16 Aligned_cols=474 Identities=18% Similarity=0.320 Sum_probs=399.4
Q ss_pred CCCChhhHHHHHHHHHHHHHHHhccCCCCCCCeEEEEEeccchhhhhhccCchhhhhcCccEEEeccCCCCC-CCCCceE
Q 009533 11 YGGDYKNFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQP-LPSMEAI 89 (532)
Q Consensus 11 ~~~~~~sl~~~~r~~ll~~~l~~v~~~~~~~~~KvLVlD~~~~~ils~~~~~s~L~e~gV~~v~~l~~~r~~-~~~~~aI 89 (532)
...++..+++.++++|+ ++|++++ |.|+||+|+.++++++++.++|.|++|||.....++..+.| ....+.|
T Consensus 10 ~~~~l~~lq~~a~~eL~-~lLds~p------G~K~lvlD~dL~~pL~~ia~~s~Lk~hgV~~~~~l~~~~~~~~~~~~~v 82 (600)
T KOG1302|consen 10 ADLNLQGLQEVARRELI-SLLDSLP------GKKELVLDPDLMGPLGLIATASLLKEHGVRRLLHLDAEKSPNSEVKQVV 82 (600)
T ss_pred ccchHHHHHHHHHHHHH-HHHhcCC------CceeEEecccccchhhccccHHHHHHhCcHHhhccCcccCcccccCeEE
Confidence 33678999999999998 6999997 49999999999999999999999999999988888775533 3346799
Q ss_pred EEecCCHHHHHHHHHHhcc--CCCCcceEEEEecCCCCHH--HHHHHHhcCCcccccceeeEEecceeecCCCceEecCc
Q 009533 90 YFIQPTKENVIMFLSDMSG--RSPLYKKAFVFFSSPISRE--LVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDE 165 (532)
Q Consensus 90 Y~i~Pt~~~i~~i~~d~~~--~~~~y~~~~i~F~~~~p~~--~~e~l~~~~~~~~~i~~i~e~~ldf~ple~~lfsl~~p 165 (532)
||++|+.++++.|++++.+ +...-+.||++| +|+. +|+.+.++.++++.+ .+.|++++++|+|.|++||+.|
T Consensus 83 y~~Rp~~~~~~~ia~~v~~~~~d~~~r~~~vi~---~P~~~~~c~~~Lee~gv~~~v-~~~e~~~~~lpld~DllSlEl~ 158 (600)
T KOG1302|consen 83 YFVRPRLENMQLIAEHVENVQRDGFTRDYHVIF---VPRRSSLCETLLEEEGVYGLV-LVEEQILDLLPLDGDLLSLELP 158 (600)
T ss_pred EEEcCchHHHHHHHHHHhhhhhchhcceeEEEE---eccHHHHHHHHHHhccccccc-ccchhhhhhccccccchhccch
Confidence 9999999999999999974 234578899999 6653 688888889999776 5999999999999999999999
Q ss_pred chhhhhhCCCCCccchHHHHHHHHHHHHHHHHHhCCCcEEEEccCCCccccccccccchHHHHHHHHHHHHHHHhhhhCC
Q 009533 166 RALEELFGDEENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIE 245 (532)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~~l~~ia~~L~~l~~~lg~~P~Ir~~g~~~~~~~~~~~~~~~l~~~la~~l~~~l~~~~~~~~ 245 (532)
.+|.++|.++| .+.+..+|+++.+++.++|.||.|+++|+ .|+++++.+.+..++..
T Consensus 159 ~~~~d~~~~gd-----~s~l~~va~~l~~LQ~~~G~ip~v~g~G~------------------~ak~~~~l~~~l~~e~~ 215 (600)
T KOG1302|consen 159 NSFLDLYLDGD-----QSSLYHVADALVSLQRLYGIIPKVYGKGE------------------CAKRVWELLKKLEREEA 215 (600)
T ss_pred HHHHHHhhccc-----cchhHHHHHHHHHHHHhhCCCcceeeccH------------------HHHHHHHHHHHHhhccc
Confidence 99999999998 67899999999999999999999999998 56666777776655432
Q ss_pred --CCC-CCCCeeEEEecCCCCcccccchhhhhhHHHhhhcccCCCeEEEeccCCC----C----CCCcceeEecCCCChH
Q 009533 246 --NFP-QTETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKT----G----GPPEKKEVLLEEHDPL 314 (532)
Q Consensus 246 --~~~-~~~~~~LiIlDR~~D~iTPLlh~~TYqali~dll~I~~~~v~~~~~~~~----g----~~~~~k~~~L~~~D~l 314 (532)
+.+ .+++++||++||++|++||||||+||+|++||+|||++|.|+++.+..+ | +..+++.+.++..|++
T Consensus 216 t~n~~~~~~~~~liLlDR~~D~vtpLlTQltYeGLLDEiy~I~~g~vk~p~~~~~~~q~g~~~~~~~~~~~~l~~~~deI 295 (600)
T KOG1302|consen 216 TENNGDRPEIDHLILLDRDVDPVTPLLTQLTYEGLLDEIYGISSGNVKLPSENFKRNQAGDLGKGKTEKKIVLLYSSDEI 295 (600)
T ss_pred cccCCCccccceEEEEeccCcccchhhhHHHHHHHHHHHhhccCCeEecChHHccchhcCCCccCccccceeccCcHHHH
Confidence 112 2457899999999999999999999999999999999999998764321 1 2345677888899999
Q ss_pred HHHhhcccHHHHHHHHHHHHHHHHHHhHHHHhhhcccCCCCCCHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHH
Q 009533 315 WLELRHAHIADASERLHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRE 394 (532)
Q Consensus 315 ~~e~R~~hi~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~em~~~v~~Lp~~~~~~~~l~~H~~la~~i~~~~~~ 394 (532)
|+++||+||+.|++.+++++++++..... +.+++|++||++||++||.++++++.++.|+++||.+++++.+
T Consensus 296 y~eiR~k~f~~v~~~lsk~ak~l~~~~~~--------r~~~~sV~Eik~FV~~Lp~L~~~~~~l~~H~~lae~i~~~v~~ 367 (600)
T KOG1302|consen 296 YAEIRNKHFNAVGPLLSKKAKELQAQYET--------RRQAMSVAEIKDFVSKLPKLQQRKKSLERHTNLAEMIMQHVKN 367 (600)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999876542 3568899999999999999999999999999999999999999
Q ss_pred hhHhHHHHHHHHhhcCCCChHHHHHhhhc--CCCCChhhHHHHHHHHHHhCCCCCCchH----HHHHHHHcCCChhHHHH
Q 009533 395 LRLRELGQLEQDLVFGDAGLKDVVKFFTT--NEDVSRENKLRLLMILAAIYPEKFQGEK----GQNIMKLARLQSDDITA 468 (532)
Q Consensus 395 ~~l~~~~~lEQ~l~~g~~~~k~l~~~i~~--~~~~~~~dkLRLl~Ly~l~~~~gi~~~~----~~~llq~~gl~~~~~~~ 468 (532)
..|.+...+||+++.|.+..+. .++|++ ....+...+|||+||.|++. +|+++++ +++++|.||+ +|+.+
T Consensus 368 ~~f~~~l~lE~ell~~~d~~k~-~~~IeElI~~~~~~~~vLRLicL~Slt~-~Gl~~k~l~~~rr~~lqsYG~--ehl~t 443 (600)
T KOG1302|consen 368 EDFRKLLKLEHELLEGNDSDKD-FDYIEELIYQEVPLNNVLRLICLLSLTC-NGLKPKDLDHYRREYLQSYGY--EHLLT 443 (600)
T ss_pred HHHHHHHHHHHHHHhccCcccc-hHHHHHHHhhcccHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhhhH--HHHHH
Confidence 9999999999999999876654 555554 34789999999999999987 7999865 5679999999 99999
Q ss_pred HHHHHHhcCccccCCCCC---CCccccccccccccccccc----cCCCCCccccccccccccchhhhhh
Q 009533 469 VNNMRLLGGASDIKKSST---GAFSLKFDINKKKRAVRKD----RTGEEQTWQLSRFYPMIEVHPKLVF 530 (532)
Q Consensus 469 l~nL~~lGl~~~~~~~~~---~~~~~~f~~~k~~~~~~k~----~~~~~~~y~~Sry~P~i~~lv~~~~ 530 (532)
|.||+++|++..+..... -..+..|++.++..+..++ .+|+|++|+||||+|++.+|||.++
T Consensus 444 l~nL~kaGLl~~q~~~~~~~~~~~~~~~st~~ntl~l~~~~~d~~~p~DiaYvySgy~PLs~rlve~~l 512 (600)
T KOG1302|consen 444 LQNLEKAGLLREQTGGRKLHTKSSKRNYSTWANTLPLVDEENDESNPSDIAYVYSGYAPLSCRLVEDLL 512 (600)
T ss_pred HHHHHHcCCcccccCCCcchhhHHHHHHHHHHhcCCCcCCcccccCcccchhhhcccccHHHHHHHHHh
Confidence 999999999997764311 0011134444444444432 2599999999999999999999876
No 5
>KOG1299 consensus Vacuolar sorting protein VPS45/Stt10 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.4e-68 Score=530.39 Aligned_cols=464 Identities=23% Similarity=0.384 Sum_probs=373.8
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCeEEEEEeccchhhhhhccCchhhhhcCccEEEeccC-CCCCCCCCceEEEecCCHH
Q 009533 19 KQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHR-RRQPLPSMEAIYFIQPTKE 97 (532)
Q Consensus 19 ~~~~r~~ll~~~l~~v~~~~~~~~~KvLVlD~~~~~ils~~~~~s~L~e~gV~~v~~l~~-~r~~~~~~~aIY~i~Pt~~ 97 (532)
-...|..+ +.|+.... ++.|||++|+.|+.++|.|++.|+++++.|.+++.|++ .|+.+.+.+||+||+||++
T Consensus 4 v~~~k~yi-~~m~~~~g-----~~mKvLLlD~eTt~ivS~~~tQSelLq~evyLferI~n~~rE~~khLkcvvfiRPT~e 77 (549)
T KOG1299|consen 4 VSSSKKYI-EKMIQESG-----PGMKVLLLDKETTPIVSMCITQSELLQKEVYLFERIDNKSRERIKHLKCVVFIRPTPE 77 (549)
T ss_pred HHHHHHHH-HHHHHhcC-----CCceEEEEcCCCceehhhhcchHHHhhhheehhhhhcchhhHHhhCceEEEEeccChH
Confidence 34556554 45766543 36999999999999999999999999999999999986 7889999999999999999
Q ss_pred HHHHHHHHhccCCCCcceEEEEecCCCCHHHHHHHHhcCCcccccceeeEEecceeecCCCceEecCcchhhhhhCCCCC
Q 009533 98 NVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEEN 177 (532)
Q Consensus 98 ~i~~i~~d~~~~~~~y~~~~i~F~~~~p~~~~e~l~~~~~~~~~i~~i~e~~ldf~ple~~lfsl~~p~~~~~l~~~~~~ 177 (532)
||+.++++++ +|+|..|||||++.+|+..++.||++ +....|+.++|+++||++.++++|||++|+.|...++ .+
T Consensus 78 niq~L~~ELr--nPry~~Y~lyFsN~i~ks~le~LAes-D~~E~V~eVqE~y~Df~~~n~~Lfsln~p~~~~~~~~-w~- 152 (549)
T KOG1299|consen 78 NIQLLIEELR--NPRYGEYHLYFSNIISKSDLERLAES-DEQEVVREVQEIYLDFFKVNPDLFSLNIPHIFESSLN-WD- 152 (549)
T ss_pred HHHHHHHHhc--CCcceeEEEEEeccCCHHHHHHHHhc-chHHHHHHHHHHHHhhhccCCceeecCCchhhccccc-cC-
Confidence 9999999997 59999999999999999999999975 5567778899999999999999999999998877533 11
Q ss_pred ccchHHHHHHHHHHHHHHHHHhCCCcEEEEccCCCccccccccccchHHHHHHHHHHHHHHHhhhhCCCCCCCC-CeeEE
Q 009533 178 SRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQTE-TCDLL 256 (532)
Q Consensus 178 ~~~~~~~l~~ia~~L~~l~~~lg~~P~Ir~~g~~~~~~~~~~~~~~~l~~~la~~l~~~l~~~~~~~~~~~~~~-~~~Li 256 (532)
...+.++.++|++++.+|+..|.|||++++ ..|+++|+.+...+.+ .+..-+|+..+ .++||
T Consensus 153 ----~~~l~R~~~GI~AllLsLK~~P~IRYq~~S------------~~~~~lAe~vs~~i~~-E~~lFdfr~~~~~p~LL 215 (549)
T KOG1299|consen 153 ----PGALTRSTQGIIALLLSLKKKPVIRYQTSS------------RACKRLAEEVSYRITK-ESTLFDFRRTDSPPLLL 215 (549)
T ss_pred ----hhhhhHhHhhHHHHHHhccCCCeeEeecCC------------HHHHHHHHHHHHHHhh-hhhhcccccCCCCCeEE
Confidence 567899999999999999999999999883 5688999998888766 33344666533 68999
Q ss_pred EecCCCCcccccchhhhhhHHHhhhcccCCCeEEEeccCCCCCCCcceeEecC-CCChHHHHhhcccHHHHHHHHHHHHH
Q 009533 257 ILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLE-EHDPLWLELRHAHIADASERLHEKMT 335 (532)
Q Consensus 257 IlDR~~D~iTPLlh~~TYqali~dll~I~~~~v~~~~~~~~g~~~~~k~~~L~-~~D~l~~e~R~~hi~~v~~~l~~~~~ 335 (532)
|+||+.||+||||+|||||||+||++||+||.|.+.. .++...+.++++|+ .+|+||+..++.||+|++..|+..+.
T Consensus 216 iLDR~~DpvTPLL~qWTYQaMvHEl~gi~nnrvdls~--~~~~~kd~~evvLS~~~D~Ff~~nmy~NfgEiG~~IK~lv~ 293 (549)
T KOG1299|consen 216 ILDRRDDPVTPLLNQWTYQAMVHELLGIKNNRVDLSK--VPSIPKDLEEVVLSSEQDPFFKNNMYANFGEIGSNIKQLVS 293 (549)
T ss_pred EEecCCCCCchhhhHHHHHHHHHHHhccccCEEeecc--CCCCccccceeeeccccchHHHhhhhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999875 23333444677776 79999999999999999999999999
Q ss_pred HHHHHhHHHHhhhcccCCCCCCHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHhhcCCCCh-
Q 009533 336 SFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAGL- 414 (532)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~s~~em~~~v~~Lp~~~~~~~~l~~H~~la~~i~~~~~~~~l~~~~~lEQ~l~~g~~~~- 414 (532)
+|+.+.+. +.+..|++||+.|+..+|+|+++...++.|+.+..++++..+.++|.+++++||++++..+..
T Consensus 294 ~fq~k~~~--------~~~iesi~Dmk~Fve~YPefkkmSG~VsKHv~lvgEls~lv~~~nL~evSEvEQ~l~c~~~~~~ 365 (549)
T KOG1299|consen 294 EFQFKTKT--------NSNIESIADMKNFVEDYPEFKKMSGNVSKHVALVGELSKLVQRRNLLEVSEVEQNLACNGDHGA 365 (549)
T ss_pred HHHHhhhh--------chhhhhHHHHHHHHHhcHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCcchh
Confidence 99874331 234679999999999999999999999999999999999999999999999999999865432
Q ss_pred --HHHHHhhhcCCCCChhhHHHHHHHHHHhCCCCCCchHHHHHHH---HcCCChhHHHHHHHHHHhcCccccCCCCCCCc
Q 009533 415 --KDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMK---LARLQSDDITAVNNMRLLGGASDIKKSSTGAF 489 (532)
Q Consensus 415 --k~l~~~i~~~~~~~~~dkLRLl~Ly~l~~~~gi~~~~~~~llq---~~gl~~~~~~~l~nL~~lGl~~~~~~~~~~~~ 489 (532)
.++.++|. +..++..|++||+|||+|.+ ...+..+.+++++ .-|- ..-.++.-|.+.|....+++...|+-
T Consensus 366 ~~~~i~~LL~-n~~vs~~d~lrLv~lYaLr~-e~~~~~~~~~L~~~l~~~~~--~~~~~v~~ll~~~G~~~R~~dlf~~~ 441 (549)
T KOG1299|consen 366 DFNDIKKLLQ-NEKVSEIDRLRLVALYALRY-ERHPPNELRQLPQILREQGP--KKPELVPFLLKYAGLHVRQGDLFGPN 441 (549)
T ss_pred hHHHHHHHHc-CCcccHHHHHHHHHHHHHHh-ccCChHHHHHHHHHHHhcCC--CcchhHHHHHHhcCcccccccccCcc
Confidence 46677777 57799999999999999998 4666666666544 3333 22344555555554444443221111
Q ss_pred cccccccccccccccccCCCCCccccccccccccchhhhhh
Q 009533 490 SLKFDINKKKRAVRKDRTGEEQTWQLSRFYPMIEVHPKLVF 530 (532)
Q Consensus 490 ~~~f~~~k~~~~~~k~~~~~~~~y~~Sry~P~i~~lv~~~~ 530 (532)
+ .+...|. .-| ..++.+=+|-.+.|+++++++.+|
T Consensus 442 ~-~v~i~R~---~~k--glkgvENVytQH~P~lk~~l~~~~ 476 (549)
T KOG1299|consen 442 D-LVPIARR---FIK--GLKGVENVYTQHQPLLKSTLEDLF 476 (549)
T ss_pred h-hHHHHHH---Hhh--ccCcchhhhhccCHHHHHHHHHHH
Confidence 0 0111111 111 123456678899999999999886
No 6
>KOG1301 consensus Vesicle trafficking protein Sly1 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.7e-64 Score=506.66 Aligned_cols=442 Identities=24% Similarity=0.422 Sum_probs=364.9
Q ss_pred hhhHHHHHHHHHHHHHHHhccC----CC-CCCCeEEEEEeccchhhhhhccCchhhhhcCccEEEeccCCCCCCCCCceE
Q 009533 15 YKNFKQISRERLLYEMLRSAKT----GT-SKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAI 89 (532)
Q Consensus 15 ~~sl~~~~r~~ll~~~l~~v~~----~~-~~~~~KvLVlD~~~~~ils~~~~~s~L~e~gV~~v~~l~~~r~~~~~~~aI 89 (532)
..|||+.|-..|. .||.--.+ +. .++-|||||+|..+..+||.+++++||++||||++..|.+.|+|+|+.+||
T Consensus 9 ~~slRe~Qi~al~-~mlnLN~~~~~~~~~~epvWKVLI~Dr~gq~iISpll~VkeLRe~GvTlH~li~~dR~Pi~DVPAV 87 (621)
T KOG1301|consen 9 AASLRERQIVALK-KMLNLNKPVNKNGTAAEPVWKVLILDRFGQDIISPLLRVKELREHGITLHLLITSDRDPIPDVPAV 87 (621)
T ss_pred hhhHHHHHHHHHH-HHHHhcCCccccccccCCceEEEEEecccchhhcccccHHHHHhcCcEEEEeeccccCCCCCCCeE
Confidence 5689999998887 48752211 11 256799999999999999999999999999999999999999999999999
Q ss_pred EEecCCHHHHHHHHHHhccCCCCcceEEEEecCCCCHHHHHHHHh---cCCcccccceeeEEecceeecCCCceEecCcc
Q 009533 90 YFIQPTKENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKK---DSTVLPRIGALREMNLEYFAIDSQGFVTDDER 166 (532)
Q Consensus 90 Y~i~Pt~~~i~~i~~d~~~~~~~y~~~~i~F~~~~p~~~~e~l~~---~~~~~~~i~~i~e~~ldf~ple~~lfsl~~p~ 166 (532)
|||+||.+|+++|++|+++ .+|..||+.|++++|+..+|.||. +.|.+.+|..+.+-+++|+.+|+|+|+|.++.
T Consensus 88 YFV~Pt~eNid~i~~Dl~~--~lY~~~ylNF~Ssi~R~~LE~lA~~a~~~g~v~~I~kVyDQYlnFI~LEddlFsL~~~~ 165 (621)
T KOG1301|consen 88 YFVSPTEENIDRIIQDLSK--GLYDSYYLNFISSISRSLLEDLASAASETGAVLQIHKVYDQYLNFIVLEDDLFSLGMQN 165 (621)
T ss_pred EEeCCchHhHHHHHHHHHH--hhhhhheeeccccccHHHHHHHHHHHhhcchHHHHHHHHHhHhhheeecchhhhhcccc
Confidence 9999999999999999985 689999999999999999999985 46788889999999999999999999999999
Q ss_pred hhhhhhCCCCCccchHHHHHHHHHHHHHHHHHhCCCcEEEEccCCCccccccccccchHHHHHHHHHHHHHHHhhhhC--
Q 009533 167 ALEELFGDEENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSI-- 244 (532)
Q Consensus 167 ~~~~l~~~~~~~~~~~~~l~~ia~~L~~l~~~lg~~P~Ir~~g~~~~~~~~~~~~~~~l~~~la~~l~~~l~~~~~~~-- 244 (532)
+|..+..|+.....+...++.||++|+++|.++|.+|.|||-.+. .++.+|+++-+++.+.+-..++..
T Consensus 166 ~~~~~n~p~t~e~ei~~~~~~IvdgLF~v~vTlG~VPiIRcp~g~---------aAEmvA~kL~qKLRd~l~d~k~~lft 236 (621)
T KOG1301|consen 166 SFHAINRPSTTEEEINALMDRIVDGLFSVFVTLGEVPIIRCPKGG---------AAEMVARKLDQKLRDNLRDTKNNLFT 236 (621)
T ss_pred cchhccCCCchHHHHHHHHHHHHHHHHHHheecccceeEECCCCC---------HHHHHHHHHHHHHHHHhHhhccccee
Confidence 997777766555566778999999999999999999999995442 246677777777777665444321
Q ss_pred --CCCCCCCCeeEEEecCCCCcccccchhhhhhHHHhhhcccCCCeEEEeccCCCCCCCcceeEecCCCChHHHHhhccc
Q 009533 245 --ENFPQTETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAH 322 (532)
Q Consensus 245 --~~~~~~~~~~LiIlDR~~D~iTPLlh~~TYqali~dll~I~~~~v~~~~~~~~g~~~~~k~~~L~~~D~l~~e~R~~h 322 (532)
+.+..-+|+.|+|+||++|++||+-|.||||||+||+|+.+.|.|+++.+. +...+|.+.|+.+|+||....+..
T Consensus 237 ~~~~~~~~~RPvLvl~DRn~Dlat~l~HtWtYqaLvhDvl~l~lN~vtv~~~~---~~~~~k~yDld~~D~fW~~n~~~p 313 (621)
T KOG1301|consen 237 MDGGGAGFQRPVLVLLDRNIDLATPLHHTWTYQALVHDVLDLELNRVTLESES---KRKKKKSYDLDPNDKFWRRNKGSP 313 (621)
T ss_pred ccCcccCCCCceEEEEecccccccccccceehHHHHHHHHhcccceEEeeccc---cCCCCccccCCCccHHHHhcCCCC
Confidence 111123589999999999999999999999999999999999999998743 223467899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHhhh--c---ccCC---CCCCHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHH
Q 009533 323 IADASERLHEKMTSFISKNKAAQIQH--S---ARDG---GELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRE 394 (532)
Q Consensus 323 i~~v~~~l~~~~~~~~~~~~~~~~~~--~---~~~~---~~~s~~em~~~v~~Lp~~~~~~~~l~~H~~la~~i~~~~~~ 394 (532)
|++|.+.+.+.+.+++.+. +++++ | ..++ ...+...++..|++||++.++++.+.+|++||.++++.++.
T Consensus 314 FP~VAE~Ve~eL~~Yk~~~--~ei~r~~G~sg~~e~~~~~~~Dtt~l~~aV~sLPEL~ekK~~ID~HtnIatalL~~Ike 391 (621)
T KOG1301|consen 314 FPEVAENVEEELESYKNEE--AEIKRKMGLSGEDEGAIDELNDTTKLQSAVSSLPELTEKKRLIDLHTNIATALLEQIKE 391 (621)
T ss_pred CchHHHHHHHHHHHHHhhH--HHHHhhcCCCcccccccccccchHHHHHHHHHhHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999998753 34442 1 1111 12334489999999999999999999999999999999999
Q ss_pred hhHhHHHHHHHHhhcCCCChHHHHHhhhcCCCCChhhHHHHHHHHHHhCCCCCCchH---HHHHHHHcCCChhHHHHHHH
Q 009533 395 LRLRELGQLEQDLVFGDAGLKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEK---GQNIMKLARLQSDDITAVNN 471 (532)
Q Consensus 395 ~~l~~~~~lEQ~l~~g~~~~k~l~~~i~~~~~~~~~dkLRLl~Ly~l~~~~gi~~~~---~~~llq~~gl~~~~~~~l~n 471 (532)
++++.+.++|+++..+.- ...+++.+.+....+++||||++++|.++. .-+++.+ ++..++.+|+....+..+..
T Consensus 392 R~lD~ff~~E~~~~~~~l-~~~~l~~~~~~~~gt~EDkLR~~Ii~~ls~-et~~~s~le~~e~al~e~~~d~~Al~yvkr 469 (621)
T KOG1301|consen 392 RKLDDFFEVEKKIMSTTL-DRSLLDILEDGEAGTPEDKLRLFIIYYLST-ETVPQSDLEAVENALTEAGCDLNALKYVKR 469 (621)
T ss_pred hhhhHHHHHhcccccccc-cHHHHHHHhcccCCChHHHHHHHHHHHHhh-ccccHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 999999999999987332 245677776545678999999999999986 3455544 34568888987776666666
Q ss_pred HHHh
Q 009533 472 MRLL 475 (532)
Q Consensus 472 L~~l 475 (532)
+..+
T Consensus 470 ~k~~ 473 (621)
T KOG1301|consen 470 LKEI 473 (621)
T ss_pred HHHH
Confidence 5544
No 7
>PF14071 YlbD_coat: Putative coat protein
Probab=60.70 E-value=8.2 Score=33.46 Aligned_cols=14 Identities=43% Similarity=0.895 Sum_probs=12.9
Q ss_pred EecCCCChHHHHhh
Q 009533 306 VLLEEHDPLWLELR 319 (532)
Q Consensus 306 ~~L~~~D~l~~e~R 319 (532)
++|.++|++|..+|
T Consensus 32 ~LlGEdD~~W~~Yk 45 (124)
T PF14071_consen 32 YLLGEDDPIWDPYK 45 (124)
T ss_pred HHhCCCcchHHHhh
Confidence 67889999999999
No 8
>cd04752 Commd4 COMM_Domain containing protein 4. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=24.81 E-value=1.1e+02 Score=28.28 Aligned_cols=27 Identities=15% Similarity=0.191 Sum_probs=18.7
Q ss_pred CCCchHHHHHHHHcCCChhHHHHHHHH
Q 009533 446 KFQGEKGQNIMKLARLQSDDITAVNNM 472 (532)
Q Consensus 446 gi~~~~~~~llq~~gl~~~~~~~l~nL 472 (532)
.++++.+..-++..|+|.++..+|.+.
T Consensus 59 n~~~~~l~~eL~~lglp~e~~~~l~~~ 85 (174)
T cd04752 59 NVDGESLSSELQQLGLPKEHATSLCRS 85 (174)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 355556666566678888888888774
No 9
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=22.63 E-value=3.2e+02 Score=22.56 Aligned_cols=25 Identities=20% Similarity=0.644 Sum_probs=17.9
Q ss_pred CCCCCceEEEecCC--HHHHHHHHHHh
Q 009533 82 PLPSMEAIYFIQPT--KENVIMFLSDM 106 (532)
Q Consensus 82 ~~~~~~aIY~i~Pt--~~~i~~i~~d~ 106 (532)
++...+++|+++|+ .+.++.+++.+
T Consensus 4 ~mr~YE~~~Il~p~l~e~~~~~~~~~~ 30 (97)
T CHL00123 4 KLNKYETMYLLKPDLNEEELLKWIENY 30 (97)
T ss_pred cccceeEEEEECCCCCHHHHHHHHHHH
Confidence 34467899999997 55666666654
No 10
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=20.15 E-value=3.3e+02 Score=27.90 Aligned_cols=96 Identities=8% Similarity=0.124 Sum_probs=56.3
Q ss_pred HHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHhhcCCCChHHHHHhhhcCCCCChhhHHHHHHHHHH
Q 009533 362 QKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAGLKDVVKFFTTNEDVSRENKLRLLMILAA 441 (532)
Q Consensus 362 ~~~v~~Lp~~~~~~~~l~~H~~la~~i~~~~~~~~l~~~~~lEQ~l~~g~~~~k~l~~~i~~~~~~~~~dkLRLl~Ly~l 441 (532)
-+|++.-|+|+..++.+...=.++..++..+.+.+=.-+--+.++ ..+++++|.. +..+
T Consensus 216 l~fLr~~~qf~~lR~~iqqNP~ll~~~Lqqlg~~nP~L~q~Iq~n-------qe~Fl~mlne----p~~~---------- 274 (340)
T KOG0011|consen 216 LEFLRNQPQFQQLRQMIQQNPELLHPLLQQLGKQNPQLLQLIQEN-------QEAFLQLLNE----PVEG---------- 274 (340)
T ss_pred hhhhhccHHHHHHHHHHhhCHHHHHHHHHHHhhhCHHHHHHHHHH-------HHHHHHHhhc----cccc----------
Confidence 478889999999999888888888888877754331111111111 2255666652 1111
Q ss_pred hCCCCCCchHHHHHH-HHcCCChhHHHHHHHHHHhcCcc
Q 009533 442 IYPEKFQGEKGQNIM-KLARLQSDDITAVNNMRLLGGAS 479 (532)
Q Consensus 442 ~~~~gi~~~~~~~ll-q~~gl~~~~~~~l~nL~~lGl~~ 479 (532)
--++|...- -.... +.-.+++++..+|..|+.||+..
T Consensus 275 ~~~~~~~~~-~~~~~~~~I~vtpee~eAIeRL~alGF~r 312 (340)
T KOG0011|consen 275 GDGGGTGAP-AAEGPGHQIQVTPEEKEAIERLEALGFPR 312 (340)
T ss_pred ccccccccc-cccCCcceEecCHHHHHHHHHHHHhCCcH
Confidence 111111110 01111 34468899999999999999853
Done!