Query 009533
Match_columns 532
No_of_seqs 207 out of 933
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 07:20:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009533.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009533hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dn1_A NSEC1, syntaxin binding 100.0 1.2E-93 4E-98 782.5 40.6 476 16-531 4-491 (594)
2 3puk_A Syntaxin-binding protei 100.0 1.8E-92 6.1E-97 772.9 33.6 468 16-531 8-487 (592)
3 3c98_A Syntaxin-binding protei 100.0 4.6E-91 1.6E-95 768.9 41.4 477 15-531 15-503 (606)
4 1epu_A S-SEC1; parallel beta-s 100.0 4.6E-91 1.6E-95 767.2 39.5 480 17-531 2-493 (591)
5 2xhe_A UNC18; exocytosis, exoc 100.0 5.6E-90 1.9E-94 764.0 46.6 476 17-531 3-489 (650)
6 1mqs_A SLY1 protein, SLY1P; SM 100.0 3.8E-80 1.3E-84 687.1 36.8 442 14-475 15-501 (671)
7 1y9j_A SEC1 family domain cont 100.0 1.5E-29 5E-34 227.6 11.2 133 16-151 20-159 (159)
8 3he4_B Synzip5; heterodimeric 48.0 41 0.0014 21.6 4.8 32 356-387 3-34 (46)
9 3ci9_A Heat shock factor-bindi 25.0 1.4E+02 0.0048 20.4 4.8 31 357-392 3-33 (48)
10 3lwf_A LIN1550 protein, putati 14.7 2.5E+02 0.0087 24.1 5.6 52 431-484 28-80 (159)
No 1
>1dn1_A NSEC1, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3puj_A 3c98_A
Probab=100.00 E-value=1.2e-93 Score=782.54 Aligned_cols=476 Identities=31% Similarity=0.564 Sum_probs=413.5
Q ss_pred hhHHHHHHHHHHHHHHHhccCCCCCCCeEEEEEeccchhhhhhccCchhhhhcCccEEEeccCCCCCCCCCceEEEecCC
Q 009533 16 KNFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPT 95 (532)
Q Consensus 16 ~sl~~~~r~~ll~~~l~~v~~~~~~~~~KvLVlD~~~~~ils~~~~~s~L~e~gV~~v~~l~~~r~~~~~~~aIY~i~Pt 95 (532)
.+||+++|++|++++|+++++ .++|||||+|+.++++||++|++++|+++||++|+.|++.|+|+|+++|||||+||
T Consensus 4 ~~lk~~~~~~l~~~~l~~~~~---~~~~KvLilD~~t~~ils~~~~~s~Ll~~gVtlve~i~~~R~~~~~~~aIYfv~Pt 80 (594)
T 1dn1_A 4 IGLKAVVGEKIMHDVIKKVKK---KGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINKRREPLPSLEAVYLITPS 80 (594)
T ss_dssp CCHHHHHHHHHHHHTTGGGCC---TTCCEEEEECHHHHHHHHHHCCHHHHHTTTEEEEEETTSCCCCCTTSEEEEEECCC
T ss_pred hhHHHHHHHHHHHHHHhhccc---CCCCEEEEECcccHHHHHHHhCHHHHhhCCeEEEEecccccCCCCCCceEEEEeCC
Confidence 469999999999889999864 34799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcc-CCCCcceEEEEecCCCCHHHHHHHHhcCCcccccceeeEEecceeecCCCceEecCcchhhhhhCC
Q 009533 96 KENVIMFLSDMSG-RSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGD 174 (532)
Q Consensus 96 ~~~i~~i~~d~~~-~~~~y~~~~i~F~~~~p~~~~e~l~~~~~~~~~i~~i~e~~ldf~ple~~lfsl~~p~~~~~l~~~ 174 (532)
.+||++|++||+. ..++|+.|||||++.+|+.+++.|++ .++.+.|+++.|+++||+|+|+|+|||++|++|..+|++
T Consensus 81 ~~ni~~i~~d~~~~~~~~Y~~y~i~Ft~~~~~~~le~La~-~~~~~~i~~v~e~~ldfiple~dlFsL~~p~~f~~l~~~ 159 (594)
T 1dn1_A 81 EKSVHSLISDFKDPPTAKYRAAHVFFTDSCPDALFNELVK-SRAAKVIKTLTEINIAFLPYESQVYSLDSADSFQSFYSP 159 (594)
T ss_dssp HHHHHHHHHTTSSGGGCCCSEEEEEESSCCCHHHHHHHHH-SGGGGTEEEEEECCCCSEEEETTEEECCCTTHHHHHHCG
T ss_pred HHHHHHHHHHHhcccccccceEEEEeCCCCCHHHHHHHHh-cchHhhhcchheeeeeeEEccCCEEEecCcchHHHHhCC
Confidence 9999999999974 23689999999999999999999997 478999999999999999999999999999999999996
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHhCCCcEEEEccCCCccccccccccchHHHHHHHHHHHHHHHhhhhCCCCC---CCC
Q 009533 175 EENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFP---QTE 251 (532)
Q Consensus 175 ~~~~~~~~~~l~~ia~~L~~l~~~lg~~P~Ir~~g~~~~~~~~~~~~~~~l~~~la~~l~~~l~~~~~~~~~~~---~~~ 251 (532)
+.+ ....+.++.+|++|+++|.++|++|.|||+|++ ..|+++|+.|++.|+++..+++.++ ...
T Consensus 160 ~~~-~~~~~~l~~ia~~L~sl~~tlg~~P~IRy~~~~------------~~~~~lA~~v~~~l~~~~~~~~~~~~~~~~~ 226 (594)
T 1dn1_A 160 HKA-QMKNPILERLAEQIATLCATLKEYPAVRYRGEY------------KDNALLAQLIQDKLDAYKADDPTMGEGPDKA 226 (594)
T ss_dssp GGT-TSHHHHHHHHHHHHHHHHHHHTCCCEECCCTTS------------HHHHHHHHHHHHHHHHHHTTCTTTTCSTTGG
T ss_pred ccc-ccchHHHHHHHHHHHHHHHHcCCCCEEEECCCc------------hHHHHHHHHHHHHHHHhhccCccccCCCCCC
Confidence 432 234678999999999999999999999999874 2468899999999998876555442 234
Q ss_pred CeeEEEecCCCCcccccchhhhhhHHHhhhcccCCCeEEEeccCCCCCCCcceeEecCCCChHHHHhhcccHHHHHHHHH
Q 009533 252 TCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADASERLH 331 (532)
Q Consensus 252 ~~~LiIlDR~~D~iTPLlh~~TYqali~dll~I~~~~v~~~~~~~~g~~~~~k~~~L~~~D~l~~e~R~~hi~~v~~~l~ 331 (532)
+++|||+||++|++|||+||||||||+||+|||++|+|+++.+. .+..++|++.|+++|++|.++||+||++|++.|.
T Consensus 227 ~~~LiIlDR~~D~vTPLlhq~TYqalv~dll~I~~n~v~~~~~~--~~~~~~k~~~L~~~D~~~~~~r~~~f~~v~~~l~ 304 (594)
T 1dn1_A 227 RSQLLILDRGFDPSSPVLHELTFQAMSYDLLPIENDVYKYETSG--IGEARVKEVLLDEDDDLWIALRHKHIAEVSQEVT 304 (594)
T ss_dssp GCEEEEEEGGGCSSTTTSCCCBHHHHHHHHSCCBTTEEEEEECS--SSSCEEEEEECSTTCHHHHHHTTSBHHHHHHHHH
T ss_pred CCeEEEEcCCccccccccccccHHHHHHHHhcccCCEEEecCCC--CCCccceEEecCCCCHHHHHHhccCHHHHHHHHH
Confidence 78999999999999999999999999999999999999998632 2234568899999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHhhhcccCCCCCCHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHhhcCC
Q 009533 332 EKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGD 411 (532)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~em~~~v~~Lp~~~~~~~~l~~H~~la~~i~~~~~~~~l~~~~~lEQ~l~~g~ 411 (532)
+++++|+++++.. .++..|++||++||++||+|+++++.+++|++||++|++.+++ .|.+++++||+|++|.
T Consensus 305 ~~~~~~~~~~~~~-------~~~~~s~~dl~~~v~~lP~~~~~~~~l~~H~~ia~~l~~~~~~-~l~~~~e~EQ~l~~g~ 376 (594)
T 1dn1_A 305 RSLKDFSSSKRMN-------TGEKTTMRDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKHYQG-TVDKLCRVEQDLAMGT 376 (594)
T ss_dssp HHHHHHHHHTTC--------------CCSSCCTTTTCGGGHHHHHHHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHSB
T ss_pred HHHHHHHHHhhhc-------ccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCC
Confidence 9999999875421 1245688999999999999999999999999999999999987 8999999999999986
Q ss_pred CC--------hHHHHHhhhcCCCCChhhHHHHHHHHHHhCCCCCCchHHHHHHHHcCCChhHHHHHHHHHHhcCccccCC
Q 009533 412 AG--------LKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKK 483 (532)
Q Consensus 412 ~~--------~k~l~~~i~~~~~~~~~dkLRLl~Ly~l~~~~gi~~~~~~~llq~~gl~~~~~~~l~nL~~lGl~~~~~~ 483 (532)
+. .+.+.++|. +++++..|||||+|||++++ +|++++++.+|++++|++.+++.++.||+++|+...++.
T Consensus 377 d~~~~~~k~~~~~i~~lL~-~~~~~~~dkLRL~~Ly~l~~-~g~~~~~~~~L~~~~~~~~~~~~~i~nl~~lG~~~~~~~ 454 (594)
T 1dn1_A 377 DAEGEKIKDPMRAIVPILL-DANVSTYDKIRIILLYIFLK-NGITEENLNKLIQHAQIPPEDSEIITNMAHLGVPIVTDS 454 (594)
T ss_dssp CSSCCBCCCTHHHHHHHHH-CTTSCHHHHHHHHHHHHHHT-TCBCHHHHHHHHHHHTCCHHHHHHHHHGGGGTCCCBCCC
T ss_pred CcccchhHHHHHHHHHHHh-CCCCChHhHHHHHHHHHHHc-CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhCCcccccc
Confidence 42 134566776 56789999999999999987 699999999999999999999999999999998876553
Q ss_pred CCCCCccccccccccccccccccCCCCCccccccccccccchhhhhhc
Q 009533 484 SSTGAFSLKFDINKKKRAVRKDRTGEEQTWQLSRFYPMIEVHPKLVFS 531 (532)
Q Consensus 484 ~~~~~~~~~f~~~k~~~~~~k~~~~~~~~y~~Sry~P~i~~lv~~~~~ 531 (532)
.. .|.+++.++++ +.+..|++|||+|++++++|.++.
T Consensus 455 ~~----------~k~~~~~~k~~-~~e~~Y~lsr~~P~l~~ile~~~~ 491 (594)
T 1dn1_A 455 TL----------RRRSKPERKER-ISEQTYQLSRWTPIIKDIMEDTIE 491 (594)
T ss_dssp GG----------GCCCCCCCCCC-CCSCCCTTCCCCCHHHHHHHHHHT
T ss_pred cc----------ccccccccccC-CCCccceeeccchHHHHHHHHHHh
Confidence 20 12233455554 578999999999999999999874
No 2
>3puk_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare proteins, binding protein, endocytosis-exocytosis complex; 3.05A {Mus musculus} PDB: 2pjx_A
Probab=100.00 E-value=1.8e-92 Score=772.89 Aligned_cols=468 Identities=28% Similarity=0.495 Sum_probs=405.1
Q ss_pred hhHHHHHHHHHHHHHHHhccCCCCCCCeEEEEEeccchhhhhhccCchhhhhcCccEEEeccCCCCCCCCCceEEEecCC
Q 009533 16 KNFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPT 95 (532)
Q Consensus 16 ~sl~~~~r~~ll~~~l~~v~~~~~~~~~KvLVlD~~~~~ils~~~~~s~L~e~gV~~v~~l~~~r~~~~~~~aIY~i~Pt 95 (532)
.+||+++|++|++++|++|++ +++|||||+|+.++++||++|++++|+++||++|+.|++.|+|+|+++|||||+||
T Consensus 8 ~~lk~~~~~~l~~~~l~~v~~---~~~~KvLvlD~~t~~ils~~~~~sdLl~~gVtlve~i~~~R~~~~~~~aIYfv~Pt 84 (592)
T 3puk_A 8 RGLKSVVWRKIKTAVFDDCRK---EGEWKIMLLDEFTTKLLSSCCKMTDLLEEGITVIENIYKNREPVRQMKALYFISPT 84 (592)
T ss_dssp CCHHHHHHHHHHHHTTGGGCC---TTCCEEEEECHHHHHHHHHSSCTTGGGGGTEEEEEESSSCCCCBTTSCEEEEECSC
T ss_pred hhHHHHHHHHHHHHHHHhhcc---cCCCEEEEECCccHHHHHHHhcHHHHHhCCcEEEeeccCccCCCCCCcEEEEEeCC
Confidence 569999999999889999964 34799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccC-CCCcceEEEEecCCCCHHHHHHHHhcCCcccccceeeEEecceeecCCCceEecCcchhhhhhCC
Q 009533 96 KENVIMFLSDMSGR-SPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGD 174 (532)
Q Consensus 96 ~~~i~~i~~d~~~~-~~~y~~~~i~F~~~~p~~~~e~l~~~~~~~~~i~~i~e~~ldf~ple~~lfsl~~p~~~~~l~~~ 174 (532)
.+||++|++||+.. .++|+.|||||++.+|+.+++.| + +++.+.|+++.|+++||+|+|+++|||++|++|..+|++
T Consensus 85 ~eni~~i~~dl~~~~~~~Y~~~~i~F~~~~~~~lle~L-~-~~~~~~I~~v~e~~ldfiple~~lFsL~~p~~~~~l~~~ 162 (592)
T 3puk_A 85 PKSVDCFLRDFGSKSEKKYKAAYIYFTDFCPDSLFNKI-K-ASCSKSIRRCKEINISFIPQESQVYTLDVPDAFYYCYSP 162 (592)
T ss_dssp HHHHHHHHHHHTGGGCCCBSCEEEEESSCCCHHHHHHH-H-HSCCSSEEEEEECCCCEEEEETTEEEECCTTHHHHHSCC
T ss_pred HHHHHHHHHHHhccccccCCeEEEEECCCCCHHHHHHH-H-hhHHhhcCEEEEEeeeeEeccCCEEEecCCchHHHHcCC
Confidence 99999999999842 35899999999999999999999 4 578999999999999999999999999999999999996
Q ss_pred CCC-ccchHHHHHHHHHHHHHHHHHhCCCcEEEEccCCCccccccccccchHHHHHHHHHHHHHHH-hhhhCCCCCC-CC
Q 009533 175 EEN-SRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMK-YKQSIENFPQ-TE 251 (532)
Q Consensus 175 ~~~-~~~~~~~l~~ia~~L~~l~~~lg~~P~Ir~~g~~~~~~~~~~~~~~~l~~~la~~l~~~l~~-~~~~~~~~~~-~~ 251 (532)
+.+ +....+.++.+|++|+++|.++|++|.|||+|++.. -|+++|+.+++.|.+ ++.+.+.++. .+
T Consensus 163 ~~~~~~~~~~~l~~ia~~L~sl~~tlg~~P~IRy~~~~~~-----------~a~~lA~~l~~~l~~~~~~~~~~~~~~~~ 231 (592)
T 3puk_A 163 DPSNASRKEVVMEAMAEQIVTVCATLDENPGVRYKSKPLD-----------NASKLAQLVEKKLEDYYKIDEKGLIKGKT 231 (592)
T ss_dssp SSSTTHHHHHHHHHHHHHHHHHHHHHTCCCEEEECCSSSS-----------HHHHHHHHHHHHHHHSSSSCSSCSCCSCC
T ss_pred cccccccchHHHHHHHHHHHHHHHhcCCCCeEEECCCchH-----------HHHHHHHHHHHHHHHHHhccCCCcCCCCC
Confidence 542 134578899999999999999999999999987421 256899999988887 4443343332 45
Q ss_pred CeeEEEecCCCCcccccchhhhhhHHHhhhcccCCCeEEEeccCCCCCCCcceeEecCCCChHHHHhhcccHHHHHHHHH
Q 009533 252 TCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADASERLH 331 (532)
Q Consensus 252 ~~~LiIlDR~~D~iTPLlh~~TYqali~dll~I~~~~v~~~~~~~~g~~~~~k~~~L~~~D~l~~e~R~~hi~~v~~~l~ 331 (532)
+++|||+||++|++|||+||||||||+||+|||++|+|+++. .| ++|++.|+++|++|.++||+||++|++.|.
T Consensus 232 ~~~LiIlDR~~D~vtPLlh~~TYqalv~dll~i~~~~v~~~~---~g---~~k~~~L~~~D~~~~~~r~~~f~~v~~~l~ 305 (592)
T 3puk_A 232 QSQLLIIDRGFDPVSTVLHELTFQAMAYDLLPIENDTYKYKT---DG---KEKEAVLEEDDDLWVRVRHRHIAVVLEEIP 305 (592)
T ss_dssp SEEEEEEEGGGCSSTTTSCCCBHHHHHHHHSCCGGGEEECCS---SS---SCCEEECSTTSSSTTTTTTSBHHHHHTTSC
T ss_pred CceEEEecCCccccccccccccHHHHHHHHhcccCCEEEecC---CC---ceeEEecCCCCHHHHHHhccCHHHHHHHHH
Confidence 899999999999999999999999999999999999999874 22 457899999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHhhhcccCCCCCCHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHhhcCC
Q 009533 332 EKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGD 411 (532)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~em~~~v~~Lp~~~~~~~~l~~H~~la~~i~~~~~~~~l~~~~~lEQ~l~~g~ 411 (532)
+++++|+++++. ..+..|++||++||++||+|+++++.+++|++||++|++.+++ +|.+++++||+|++|.
T Consensus 306 ~~~~~~~~~~~~--------~~~~~s~~dl~~~v~~lp~~~~~~~~l~~H~~ia~~l~~~~~~-~l~~~~e~EQ~l~~g~ 376 (592)
T 3puk_A 306 KLMKEISSTKKA--------TEGKTSLSALTQLMKKMPHFRKQISKQVVHLNLAEDCMNKFKL-NIEKLCKTEQDLALGT 376 (592)
T ss_dssp SCSTTTTTCC---------------CCTTHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHhhc--------ccCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCC
Confidence 999999876542 1245689999999999999999999999999999999999987 8999999999999987
Q ss_pred CCh----H----HHHHhhhcCCCCChhhHHHHHHHHHHhCCCCCCchHHHHHHHHcCCChhHHHHHHHHHHhcCccccCC
Q 009533 412 AGL----K----DVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKK 483 (532)
Q Consensus 412 ~~~----k----~l~~~i~~~~~~~~~dkLRLl~Ly~l~~~~gi~~~~~~~llq~~gl~~~~~~~l~nL~~lGl~~~~~~ 483 (532)
+.. + .++++|. +.+++..|||||+|||++++ +|++++++.+|++++|+++ ++.+|.||+++|+...++.
T Consensus 377 d~~~~~~k~~~~~i~~~L~-~~~~~~~dkLRL~lLy~L~~-~g~~~~~~~~Ll~~~g~~~-~~~~i~nl~~lg~~~~~~~ 453 (592)
T 3puk_A 377 DAEGQRVKDSMLVLLPVLL-NKNHDNCDKIRAVLLYIFGI-NGTTEENLDRLIHNVKIED-DSDMIRNWSHLGVPIVPPS 453 (592)
T ss_dssp CTTCCSCSCCHHHHTTTTT-SCSCCHHHHHHHHHHHHHHS-CBCCHHHHHHHHHHTCCCT-TTHHHHGGGGGTCCSSSSB
T ss_pred CccchhhHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHcCCCh-HHHHHHHHHHhCCccccCc
Confidence 521 2 3345555 56789999999999999987 7999999999999999987 8999999999998876542
Q ss_pred CCCCCccccccccccccccccccCCCCCccccccccccccchhhhhhc
Q 009533 484 SSTGAFSLKFDINKKKRAVRKDRTGEEQTWQLSRFYPMIEVHPKLVFS 531 (532)
Q Consensus 484 ~~~~~~~~~f~~~k~~~~~~k~~~~~~~~y~~Sry~P~i~~lv~~~~~ 531 (532)
. ++++.+|++ +.|.+|++|||+|++++++|.++.
T Consensus 454 ~-------------~~~~~rk~~-~~e~~Y~~Sr~~P~l~~ile~~~~ 487 (592)
T 3puk_A 454 Q-------------QAKPLRKDR-SAEETFQLSRWTPFIKDIMEDAID 487 (592)
T ss_dssp S-------------SCCCCCCCC-CCCCGGGSCCCCCTTHHHHHHHHT
T ss_pred c-------------ccCcccccC-CCCcceeeeccchHHHHHHHHHHh
Confidence 1 223344554 678999999999999999999874
No 3
>3c98_A Syntaxin-binding protein 1; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} PDB: 3puj_A
Probab=100.00 E-value=4.6e-91 Score=768.89 Aligned_cols=477 Identities=31% Similarity=0.558 Sum_probs=412.1
Q ss_pred hhhHHHHHHHHHHHHHHHhccCCCCCCCeEEEEEeccchhhhhhccCchhhhhcCccEEEeccCCCCCCCCCceEEEecC
Q 009533 15 YKNFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQP 94 (532)
Q Consensus 15 ~~sl~~~~r~~ll~~~l~~v~~~~~~~~~KvLVlD~~~~~ils~~~~~s~L~e~gV~~v~~l~~~r~~~~~~~aIY~i~P 94 (532)
+.+||+++|++|++++|++|++ +++|||||+|+.+++|||++|++++|+++||++|+.|++.|+|+|+++|||||+|
T Consensus 15 p~~l~~~~~~~~l~~~i~~v~~---~~~wKvLi~D~~t~~iis~~~~~~~L~~~gVtl~~~i~~~R~~~~~~~aIyfv~P 91 (606)
T 3c98_A 15 PIGLKAVVGEKIMHDVIKKVKK---KGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINKRREPLPSLEAVYLITP 91 (606)
T ss_dssp -CCHHHHHHHHHHHHTHHHHCB---TTBCEEEEECHHHHHHHHTTCCHHHHTTTTEEEEEETTSCCCCBTTSCEEEEECC
T ss_pred cHHHHHHHHHHHHHHHHhccCC---CCceEEEEEcCCChHHHHhhCCHHHHHHCCCeEEEeccCCCCCCCCCCEEEEEcC
Confidence 4679999999999999999975 2479999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhccC-CCCcceEEEEecCCCCHHHHHHHHhcCCcccccceeeEEecceeecCCCceEecCcchhhhhhC
Q 009533 95 TKENVIMFLSDMSGR-SPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFG 173 (532)
Q Consensus 95 t~~~i~~i~~d~~~~-~~~y~~~~i~F~~~~p~~~~e~l~~~~~~~~~i~~i~e~~ldf~ple~~lfsl~~p~~~~~l~~ 173 (532)
|.+||++|++||++. .++|+.|||||++.+|+.++++|+++ ++...|.++.|+++||+|+|+|+|||++|++|..+|+
T Consensus 92 t~eni~~i~~dl~~~~~~~Y~~~~i~F~~~~~~~~le~la~~-~~~~~i~~v~e~~ldf~~le~~lfsL~~~~~~~~l~~ 170 (606)
T 3c98_A 92 SEKSVHSLISDFKDPPTAKYRAAHVFFTDSCPDALFNELVKS-RAAKVIKTLTEINIAFLPYESQVYSLDSADSFQSFYS 170 (606)
T ss_dssp CHHHHHHHHHTTTSGGGCCBSCEEEEESSCCCHHHHHHHHTS-GGGGTEEEEEECCCCSEECSSSEEECCCTTHHHHHHC
T ss_pred CHHHHHHHHHHhcchhhcccCeEEEEECCCCCHHHHHHHHhc-CcccccCeEEEEecchhhcCCcEEEecCCchHHHhcC
Confidence 999999999999742 35899999999999999999999974 6788999999999999999999999999999999998
Q ss_pred CCCCccchHHHHHHHHHHHHHHHHHhCCCcEEEEccCCCccccccccccchHHHHHHHHHHHHHHHhhhhCCCCC---CC
Q 009533 174 DEENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFP---QT 250 (532)
Q Consensus 174 ~~~~~~~~~~~l~~ia~~L~~l~~~lg~~P~Ir~~g~~~~~~~~~~~~~~~l~~~la~~l~~~l~~~~~~~~~~~---~~ 250 (532)
++. .......++.+|++|+++|.++|++|.|||+|++ ..|+.+|+.+++.++.+.++++.++ ..
T Consensus 171 ~~~-~~~~~~~l~~ia~~L~sv~~~lg~~P~Ir~~~~~------------~~~~~la~~~~~~l~~~~~~~~~~~~~~~~ 237 (606)
T 3c98_A 171 PHK-AQMKNPILERLAEQIATLCATLKEYPAVRYRGEY------------KDNALLAQLIQDKLDAYKADDPTMGEGPDK 237 (606)
T ss_dssp GGG-TTSCHHHHHHHHHHHHHHHHHHTCCCEEEECTTS------------HHHHHHHHHHHHHHHHHHHHCTTTTCSTTT
T ss_pred Ccc-cccchHHHHHHHHHHHHHHHHcCCCCeEEEecCc------------hHHHHHHHHHHHHHHHHHhcCCcccCCCCC
Confidence 643 2233678999999999999999999999999874 3467889999999998887765442 34
Q ss_pred CCeeEEEecCCCCcccccchhhhhhHHHhhhcccCCCeEEEeccCCCCCCCcceeEecCCCChHHHHhhcccHHHHHHHH
Q 009533 251 ETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADASERL 330 (532)
Q Consensus 251 ~~~~LiIlDR~~D~iTPLlh~~TYqali~dll~I~~~~v~~~~~~~~g~~~~~k~~~L~~~D~l~~e~R~~hi~~v~~~l 330 (532)
.+++|||+||++|++|||+||||||||+||+|||++|+|+++.+. .+..++|++.|+++|++|.++||+||++|++.|
T Consensus 238 ~~~~LlIlDR~~D~vTPLlhq~TYqalv~dll~I~~n~v~~~~~~--~~~~~~k~~~l~~~D~~~~~~r~~~f~~v~~~l 315 (606)
T 3c98_A 238 ARSQLLILDRGFDPSSPVLHELTFQAMSYDLLPIENDVYKYETSG--IGEARVKEVLLDEDDDLWIALRHKHIAEVSQEV 315 (606)
T ss_dssp TSCEEEEEEGGGCSSTTTSCCCBHHHHHHHHSCCBTTEEEEEEES--SSSEEEEEEECSTTCHHHHHHTTSBHHHHHHHH
T ss_pred CCceEEEeeccccccchhcccccHHHHHHHHhCccCCeEEEecCC--CCCccceEeecCCCchhHHHHhccCHHHHHHHH
Confidence 578999999999999999999999999999999999999998632 233456889999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHhhhcccCCCCCCHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHhhcC
Q 009533 331 HEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFG 410 (532)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~em~~~v~~Lp~~~~~~~~l~~H~~la~~i~~~~~~~~l~~~~~lEQ~l~~g 410 (532)
.+++++|+++++. ..++..|++||++||++||+|+++++.+++|++||++|++.++ ++|.+++++||+|++|
T Consensus 316 ~~~~~~~~~~~~~-------~~~~~~s~~dlk~~v~~lP~~~~~~~~l~~H~~ia~~l~~~~~-~~l~~~~e~EQ~l~~~ 387 (606)
T 3c98_A 316 TRSLKDFSSSKRM-------NTGEKTTMRDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKHYQ-GTVDKLCRVEQDLAMG 387 (606)
T ss_dssp HHHHHHHHHHTTC--------------CCSCCCTTTTCGGGHHHHHHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhh-------hcccccCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhC
Confidence 9999999876542 1234568899999999999999999999999999999999995 6899999999999998
Q ss_pred CCC--------hHHHHHhhhcCCCCChhhHHHHHHHHHHhCCCCCCchHHHHHHHHcCCChhHHHHHHHHHHhcCccccC
Q 009533 411 DAG--------LKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIK 482 (532)
Q Consensus 411 ~~~--------~k~l~~~i~~~~~~~~~dkLRLl~Ly~l~~~~gi~~~~~~~llq~~gl~~~~~~~l~nL~~lGl~~~~~ 482 (532)
.+. .+.++++|. +..++..|||||+|||++++ +|++++++.++++++|++.++..++.||+++|+...++
T Consensus 388 ~d~~~~~~~~~~~~i~~ll~-~~~~~~~dkLRL~lLy~l~~-~g~~~~~l~~~~~~~~~~~~~~~~i~~l~~lg~~~~~~ 465 (606)
T 3c98_A 388 TDAEGEKIKDPMRAIVPILL-DANVSTYDKIRIILLYIFLK-NGITEENLNKLIQHAQIPPEDSEIITNMAHLGVPIVTD 465 (606)
T ss_dssp BCTTSCBCSCTHHHHHHHHT-CTTSCHHHHHHHHHHHHHHT-TSBCHHHHHHHHHHHTCCHHHHHHHHHGGGGTCCCBCC
T ss_pred CCcchhhHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhCCccccc
Confidence 642 246777776 57889999999999999997 69999889999999999999999999999999887665
Q ss_pred CCCCCCccccccccccccccccccCCCCCccccccccccccchhhhhhc
Q 009533 483 KSSTGAFSLKFDINKKKRAVRKDRTGEEQTWQLSRFYPMIEVHPKLVFS 531 (532)
Q Consensus 483 ~~~~~~~~~~f~~~k~~~~~~k~~~~~~~~y~~Sry~P~i~~lv~~~~~ 531 (532)
... .+...+.++++ +.+.+|++|||+|++++++|.++.
T Consensus 466 ~~~----------~~~~~~~~~~~-~~~~~~~~s~~~Pll~~lle~l~k 503 (606)
T 3c98_A 466 STL----------RRRSKPERKER-ISEQTYQLSRWTPIIKDIMEDTIE 503 (606)
T ss_dssp CTT----------TCCCCCCCCCC-CCCCCCTTCCCCCHHHHHHHHHHT
T ss_pred ccc----------ccccchhhccC-CcccccceecchHHHHHHHHHHHh
Confidence 321 01112223333 578899999999999999998763
No 4
>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical BUN endocytosis-exocytosis complex; 2.40A {Loligo pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A
Probab=100.00 E-value=4.6e-91 Score=767.19 Aligned_cols=480 Identities=30% Similarity=0.516 Sum_probs=407.4
Q ss_pred hHHHHHHHHHHHHHHHhccCCCCCCCeEEEEEeccchhhhhhccCchhhhhcCccEEEeccCCCCCCCCCceEEEecCCH
Q 009533 17 NFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTK 96 (532)
Q Consensus 17 sl~~~~r~~ll~~~l~~v~~~~~~~~~KvLVlD~~~~~ils~~~~~s~L~e~gV~~v~~l~~~r~~~~~~~aIY~i~Pt~ 96 (532)
+|++++|+++++++++++++. ++|||||+|+.++++||++|++++|+++||++|++|++.|+|+|+++|||||+||.
T Consensus 2 ~l~~~~~~~~~~~i~~~~~~~---~~~KvLvlD~~~~~ils~~~~~s~L~~~gV~lv~~l~~~r~~~~~~~aIy~v~Pt~ 78 (591)
T 1epu_A 2 ALKTAVHEKIMNDVVLAVKKN---AEWKVLIVDQLSMRMVSACCKMHEIMSEGITLVEDINRRREPLPLLEAVYLITPTE 78 (591)
T ss_dssp CHHHHHHHHHHHHTHHHHCSS---SCCEEEEECHHHHHHHHHHCCHHHHHTTTEEEEEESSSCCCCEEEEEEEEEECCCH
T ss_pred ChHHHHHHHHHHHHHHhhccC---CCcEEEEEccccHHHHHHhcCHHHHHHCCCEEEeecccCCCCCCCCCeEEEecCCH
Confidence 699999999999999998752 37999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccC-CCCcceEEEEecCCCCHHHHHHHHhcCCcccccceeeEEecceeecCCCceEecCcchhhhhhCCC
Q 009533 97 ENVIMFLSDMSGR-SPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDE 175 (532)
Q Consensus 97 ~~i~~i~~d~~~~-~~~y~~~~i~F~~~~p~~~~e~l~~~~~~~~~i~~i~e~~ldf~ple~~lfsl~~p~~~~~l~~~~ 175 (532)
+||++|++||++. .|+|+.|||||++.+|+.+++.++++ ++.+.|.++.|+++||+|+|+|+|||++|++|..+|.+.
T Consensus 79 ~ni~~i~~d~~~~~~~~y~~~~i~F~~~~~~~~le~la~~-~~~~~i~~v~e~~ldf~ple~dlfsl~~~~~~~~~~~~~ 157 (591)
T 1epu_A 79 ESVKCLMADFQNPDNPQYRGAHIFFTEACPEELFKELCKS-TTARFIKTLKEINIAFLPYESQIFSLDSPDTFQVYYNPS 157 (591)
T ss_dssp HHHHHHHHHTSSTTSCSEEEEEEEESSCCCHHHHHHHHHS-TTGGGEEEEEECCCCSEEEETTEEECCCTHHHHHHHCGG
T ss_pred HHHHHHHHHHhhcccccCCeEEEEECCCCCHHHHHHHHhC-chHhhhceeeEeccceEecCCCEEEeCCccHHHHhcCCc
Confidence 9999999999852 37999999999999999999999975 578888899999999999999999999999999999863
Q ss_pred CCccchHHHHHHHHHHHHHHHHHhCCCcEEEEccCCCccccccccccchHHHHHHHHHHHHHHHhhhhCCCCCC---CCC
Q 009533 176 ENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQ---TET 252 (532)
Q Consensus 176 ~~~~~~~~~l~~ia~~L~~l~~~lg~~P~Ir~~g~~~~~~~~~~~~~~~l~~~la~~l~~~l~~~~~~~~~~~~---~~~ 252 (532)
. +....+.++.+|++|+++|.++|++|.|||+|++ ..|+++|+.++++|.++.++++.|+. ..+
T Consensus 158 ~-~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~------------~~a~~lA~~l~~~l~~~~~~~~~~~~~~~~~~ 224 (591)
T 1epu_A 158 R-AQGGIPNKERCAEQIATLCATLGEYPSVRYRSDF------------DENASFAQLVQQKLDAYRADDPTMGEGPQKDR 224 (591)
T ss_dssp G-STTCHHHHHHHHHHHHHHHHHHTCCCEEEECTTS------------THHHHHHHHHHHHHHHHHHTCTTTTCHHHHTS
T ss_pred c-hhhhhHHHHHHHHHHHHHHHHcCCCCeEEecCCC------------cHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 2 1223688999999999999999999999999884 24788999999999988776666643 357
Q ss_pred eeEEEecCCCCcccccchhhhhhHHHhhhcccCCCeEEEeccCCCCCCCcceeEecCCCChHHHHhhcccHHHHHHHHHH
Q 009533 253 CDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADASERLHE 332 (532)
Q Consensus 253 ~~LiIlDR~~D~iTPLlh~~TYqali~dll~I~~~~v~~~~~~~~g~~~~~k~~~L~~~D~l~~e~R~~hi~~v~~~l~~ 332 (532)
++|||+||++|++|||+||||||||+||+|||++|+|+++.+ +++..++|++.|+++|++|.++||+||++|++.|.+
T Consensus 225 ~~LiIlDR~~D~vTPLlhq~TYqali~dll~I~~n~v~~~~~--~~~~~~~k~~~L~~~D~~~~~~r~~~f~~v~~~l~~ 302 (591)
T 1epu_A 225 SQLLILDRGFDPISPLLHELTFQAMAYDLLPIENDVYKYVNT--GGNEVPEKEVLLDEKDDLWVEMRHQHIAVVSQNVTK 302 (591)
T ss_dssp CEEEEEEGGGCSSGGGSCCCBHHHHHHHHSCCBTTEECC-------------CEECCGGGSSHHHHTTSBHHHHHHHHHH
T ss_pred ceEEEECCCccchhhhhhhhhHHHHHHHHhCcCCCEEEEEec--CCCCccceEEeCCCCChHHHHHhccCHHHHHHHHHH
Confidence 899999999999999999999999999999999999999753 223345688999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHhhhcccCCCCCCHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHhhcCCC
Q 009533 333 KMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDA 412 (532)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~s~~em~~~v~~Lp~~~~~~~~l~~H~~la~~i~~~~~~~~l~~~~~lEQ~l~~g~~ 412 (532)
++++|+++++... .++..|++||++||++||+|+++++++++|++||++|++.+++ +|.+++++||+|++|.+
T Consensus 303 ~~~~~~~~~~~~~------~~~~~s~~~lk~~v~~lP~~~~~~~~l~~H~~ia~~l~~~i~~-~l~~~~~~EQ~l~~g~d 375 (591)
T 1epu_A 303 KLKQFADEKRMGT------AADKAGIKDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKQYQQ-HVDKLCKVEQDLAMGTD 375 (591)
T ss_dssp HHHHHHHHTC--------------CCCCCHHHHHTHHHHHHHHTTSHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHSBC
T ss_pred HHHHHHHhccccc------cccccCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCC
Confidence 9999998764211 0235688999999999999999999999999999999999999 99999999999999875
Q ss_pred Ch--------HHHHHhhhcCCCCChhhHHHHHHHHHHhCCCCCCchHHHHHHHHcCCChhHHHHHHHHHHhcCccccCCC
Q 009533 413 GL--------KDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKS 484 (532)
Q Consensus 413 ~~--------k~l~~~i~~~~~~~~~dkLRLl~Ly~l~~~~gi~~~~~~~llq~~gl~~~~~~~l~nL~~lGl~~~~~~~ 484 (532)
.. +.++++|. +.+.+..|||||+|||++++ +|++++++.+++++||++.+++.+|.||+++|+...++..
T Consensus 376 ~~g~~~k~~~~~i~~~l~-~~~~~~~dkLRLl~Ly~l~~-~g~~~~~l~~ll~~~g~~~~~~~~i~~l~~~g~~~~~~~~ 453 (591)
T 1epu_A 376 ADGEKIRDHMRNIVPILL-DQKISAYDKIRIILLYIIHK-GGISEENLAKLVQHAHIPAEEKWIINDMQNLGVPIIQDGG 453 (591)
T ss_dssp TTSCBCCCCHHHHHHHHT-CTTSCHHHHHHHHHHHHHHH-TCBCHHHHHHHHHHTTCCHHHHHHHHHGGGGTCCCBSCTT
T ss_pred ccccccchHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHc-CCCCHHHHHHHHHhcCCCHHHHHHHHHHHHcCCccccCCc
Confidence 21 25677665 46789999999999999998 6899988999999999999999999999999998766532
Q ss_pred CCCCccccccccccccccccccCCCCCccccccccccccchhhhhhc
Q 009533 485 STGAFSLKFDINKKKRAVRKDRTGEEQTWQLSRFYPMIEVHPKLVFS 531 (532)
Q Consensus 485 ~~~~~~~~f~~~k~~~~~~k~~~~~~~~y~~Sry~P~i~~lv~~~~~ 531 (532)
+...+...+ ...+++ .+++.+|++|||+|+++++||.++.
T Consensus 454 ~~~~~~~~~------~~~~~~-~~~~~~y~~s~~~Pl~~~ive~l~~ 493 (591)
T 1epu_A 454 RRKIPQPYH------THNRKE-RQADHTYQMSRWTPYMKDIMEAAVE 493 (591)
T ss_dssp SCCCCCTTS------GGGSCC-CCSCCSCGGGCCCCHHHHHHHHHHT
T ss_pred ccccccccc------cccccc-CCCCccccccccchhHHHHHHHHhc
Confidence 101111000 112223 3678899999999999999998863
No 5
>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=100.00 E-value=5.6e-90 Score=764.00 Aligned_cols=476 Identities=26% Similarity=0.486 Sum_probs=408.1
Q ss_pred hHHHHHHHHHHHHHHHhccCCCCCCCeEEEEEeccchhhhhhccCchhhhhcCccEEEeccCCCCCCCCCceEEEecCCH
Q 009533 17 NFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTK 96 (532)
Q Consensus 17 sl~~~~r~~ll~~~l~~v~~~~~~~~~KvLVlD~~~~~ils~~~~~s~L~e~gV~~v~~l~~~r~~~~~~~aIY~i~Pt~ 96 (532)
+||+++|++|++++| +|+++ ++|||||+|+.++++||++|++++|+++||++|+.|++.|+|+|+++|||||+||.
T Consensus 3 ~l~~~~r~~ll~~~l-~v~~~---~~~KvLvlD~~~~~ils~~~~~s~L~~~gV~lv~~l~~~r~~~~~~~aIyfv~Pt~ 78 (650)
T 2xhe_A 3 SLKSAVKTVLTNSLR-SVADG---GDWKVLVVDKPALRMISECARMSEILDLGVTVVEDVSKQRKVLPQFHGVYFIEPTE 78 (650)
T ss_dssp CHHHHHHHHHHHHHT-TCCCC---SSCEEEEECHHHHHHHHTTCCHHHHHTTTEEEEEETTTCCSCBTTSEEEEEECSCH
T ss_pred cHHHHHHHHHHHHHh-ccccC---CCCEEEEEccccHHHHHhhcCHHHHHhCCCEEEEeccCCCCCCCCCCEEEEEcCCH
Confidence 699999999997799 98642 37999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCcceEEEEecCCCCHHHHHHHHhcCCcccccceeeEEecceeecCCCceEecCcchhhhhhCCCC
Q 009533 97 ENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEE 176 (532)
Q Consensus 97 ~~i~~i~~d~~~~~~~y~~~~i~F~~~~p~~~~e~l~~~~~~~~~i~~i~e~~ldf~ple~~lfsl~~p~~~~~l~~~~~ 176 (532)
+||++|++||+...|+|+.|||||++.+|+.+++.+++. ++.+.|.++.|+++||+|+|+|+|||++|++|..+|++..
T Consensus 79 ~ni~~i~~d~~~~~~~y~~~~i~F~~~~~~~~le~la~~-~~~~~i~~v~e~~ldfiple~dlfsL~~~~~~~~l~~~~~ 157 (650)
T 2xhe_A 79 ENLDYVIRDFADRTPTYEAAHLFFLSPVPDALMAKLASA-KAVKYVKTLKEINTLFIPKEHRVFTLNEPHGLVQYYGSRS 157 (650)
T ss_dssp HHHHHHHHHHHSSSCSBSCEEEEESSCCCHHHHHHHHHS-GGGGGEEEEEECCCCSEEEETTEEECSCTTHHHHHHSTTG
T ss_pred HHHHHHHHHHhhcCCCcceEEEEeCCCCCHHHHHHHHhc-chhhhcCEEEEEccceEeccCCEEEeCCchHHHHhcCCcc
Confidence 999999999985447999999999999999999999874 5788998999999999999999999999999999996421
Q ss_pred CccchHHHHHHHHHHHHHHHHHhCCCcEEEEccCCCccccccccccchHHHHHHHHHHHHHHHhhhhCCCC---CCCCCe
Q 009533 177 NSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENF---PQTETC 253 (532)
Q Consensus 177 ~~~~~~~~l~~ia~~L~~l~~~lg~~P~Ir~~g~~~~~~~~~~~~~~~l~~~la~~l~~~l~~~~~~~~~~---~~~~~~ 253 (532)
..+.++.+|++|+++|.++|++|.|||+|++ ...|+++|+.+++.|.+ ..+++.+ +...++
T Consensus 158 ----~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~-----------~~~a~~la~~l~~~l~~-~~~~~~~~~~~~~~~~ 221 (650)
T 2xhe_A 158 ----SSYNIDHLVRRLSTLCTTMNVAPIVRYSSTS-----------TPGTERMAMQLQKEIDM-SVSQGLINAREGKLKS 221 (650)
T ss_dssp ----GGCCHHHHHHHHHHHHHHHTCCCEEEECTTC-----------CHHHHHHHHHHHHHHHH-HHTTTSCCCCCCSSCC
T ss_pred ----chHHHHHHHHHHHHHHHHcCCCCEEEecCCC-----------chHHHHHHHHHHHHHHh-hccCCcccCCCCCCCC
Confidence 1567999999999999999999999999874 13578889988887775 2222221 334589
Q ss_pred eEEEecCCCCcccccchhhhhhHHHhhhcccCCCeEEEeccCCCCCCCcceeEecCCCChHHHHhhcccHHHHHHHHHHH
Q 009533 254 DLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADASERLHEK 333 (532)
Q Consensus 254 ~LiIlDR~~D~iTPLlh~~TYqali~dll~I~~~~v~~~~~~~~g~~~~~k~~~L~~~D~l~~e~R~~hi~~v~~~l~~~ 333 (532)
+|||+||++|++|||+||||||||+||+|||++|+|+++.+.. ++..++|++.|+++|++|.++||+||++|++.|.++
T Consensus 222 ~LiIlDR~~D~vTPLlhq~TYqaLi~dll~I~~n~v~~~~~~~-~~~~~~k~~~L~~~D~~~~~~r~~~f~~v~~~l~~~ 300 (650)
T 2xhe_A 222 QFLILDRAVDLKSPLVHELTYQAAAYDLLNIENDIYSYSTVDA-GGREQQRQVVLGEDDDIWLQMRHLHISEVFRKVKSS 300 (650)
T ss_dssp EEEEECGGGCSSTTTSCCCBHHHHHHHHSCCBTTEEEEEECCS-SCCSEEEEEECCTTCTTHHHHTTSBHHHHHHHHHHH
T ss_pred EEEEEcCCcchhhhccccchHHHHHHHHhcCcCCEEEEEecCC-CCCccceEEeCCCCCHHHHHHhccCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987432 234567889999999999999999999999999999
Q ss_pred HHHHHHHhHHHHhhhcccCCCCCCHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHhhcCCCC
Q 009533 334 MTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAG 413 (532)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~s~~em~~~v~~Lp~~~~~~~~l~~H~~la~~i~~~~~~~~l~~~~~lEQ~l~~g~~~ 413 (532)
+++|+++++..... +...++..+++||++||++||+|+++++++++|++||++|++.+++ +|.+++++||+|++|.+.
T Consensus 301 ~~~~~~~~~~~~~~-~~~~~~~~s~~~lk~~V~~LP~~~~~~~~l~~H~~ia~~l~~~i~~-~l~~~~~~EQ~l~~g~d~ 378 (650)
T 2xhe_A 301 FDEFCVSARRLQGL-RDSQQGEGGAGALKQMLKDLPQHREQMQKYSLHLDMSNAINMAFSS-TIDSCTKAEQNIVTEEEQ 378 (650)
T ss_dssp HHHHHHHHHHTTTC-CCCCCSTTTHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHSCH-HHHHHHHHHHHHHHSBCS
T ss_pred HHHHHHHhhhhccc-cccccccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCcc
Confidence 99999876632100 0001245789999999999999999999999999999999999998 999999999999998753
Q ss_pred --------hHHHHHhhhcCCCCChhhHHHHHHHHHHhCCCCCCchHHHHHHHHcCCChhHHHHHHHHHHhcCccccCCCC
Q 009533 414 --------LKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSS 485 (532)
Q Consensus 414 --------~k~l~~~i~~~~~~~~~dkLRLl~Ly~l~~~~gi~~~~~~~llq~~gl~~~~~~~l~nL~~lGl~~~~~~~~ 485 (532)
.+.+.++|. +.+.+..|||||+|||++++ +|++++++++++++||++.+++.+|.||+++|+...++..+
T Consensus 379 ~g~~~~~~~~~i~~ll~-~~~~~~~dkLRLl~Ly~l~~-~g~~~~~l~~ll~~~G~~~~~~~~i~nL~~lgl~~~~~~~~ 456 (650)
T 2xhe_A 379 DGNKVRDFIGEVASVVV-DRRVSTEDKLRCLMLCVLAK-NGTSSHELNNLLDNANIATPSRSAIYNLEMLGATVVADRRG 456 (650)
T ss_dssp SCCBCCCHHHHHHHHHH-CTTSCHHHHHHHHHHHHHHH-TCBCHHHHHHHHHHTTCCGGGGHHHHGGGGGTCCCBGGGCC
T ss_pred cccchhHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhCCcccccccc
Confidence 135667776 46789999999999999998 68999889999999999999999999999999988654210
Q ss_pred CCCccccccccccccccccccCCCCCccccccccccccchhhhhhc
Q 009533 486 TGAFSLKFDINKKKRAVRKDRTGEEQTWQLSRFYPMIEVHPKLVFS 531 (532)
Q Consensus 486 ~~~~~~~f~~~k~~~~~~k~~~~~~~~y~~Sry~P~i~~lv~~~~~ 531 (532)
.+.+...++++ +.+|++|||+|+++++||.++.
T Consensus 457 ----------~~~~~~~rk~~---~~~yv~s~y~Pl~~rlve~l~~ 489 (650)
T 2xhe_A 457 ----------RKPKTMKRIER---DMPYVLSRWTPIVKDLMEYIAT 489 (650)
T ss_dssp ----------CCCCCCCCCCC---CCCSTTCCCCCHHHHHHHHHTT
T ss_pred ----------ccccccccccc---CCcceeccchHHHHHHHHHHhc
Confidence 11122223332 2489999999999999999864
No 6
>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1
Probab=100.00 E-value=3.8e-80 Score=687.06 Aligned_cols=442 Identities=20% Similarity=0.338 Sum_probs=359.2
Q ss_pred ChhhHHHHHHHHHHHHHHHhccCC-----C----------CCCCeEEEEEeccchhhhhhccCchhhhhcCccEEEeccC
Q 009533 14 DYKNFKQISRERLLYEMLRSAKTG-----T----------SKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHR 78 (532)
Q Consensus 14 ~~~sl~~~~r~~ll~~~l~~v~~~-----~----------~~~~~KvLVlD~~~~~ils~~~~~s~L~e~gV~~v~~l~~ 78 (532)
...+||+.|++.|+ .||+...++ . ..++|||||+|+.++++||++|++++|+++||++|+.|++
T Consensus 15 ~~~~lr~~q~~~l~-~ml~~~~~~~~~~~~~~~~~~~~~~~~~~~KvLVlD~~~~~ils~~~~~s~L~~~gVtlv~~l~~ 93 (671)
T 1mqs_A 15 KDISLRDMQISAIL-KMLFLNKDLNNNDNITTITDDIFNQQEIIWKVLILDIKSTATISSVLRVNDLLKAGITVHSLIKQ 93 (671)
T ss_dssp CCCCHHHHHHHHHH-HHHTTTTTTTSCCCCSSCCHHHHHHHCCCCEEEEECHHHHHHHTTTCCHHHHHHTTEEEEEETTS
T ss_pred CcccHHHHHHHHHH-HHHccCCCCcccccccccccccccccCCCCEEEEEccccHHHHHHhcCHHHHHhCCCeEEeeccC
Confidence 34689999999998 699877521 1 1467999999999999999999999999999999999999
Q ss_pred CCCCCCCCceEEEecCCHHHHHHHHHHhccCCCCcceEEEEecCCCCHHHHHHHHhc---CCcccccceeeEEecceeec
Q 009533 79 RRQPLPSMEAIYFIQPTKENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKKD---STVLPRIGALREMNLEYFAI 155 (532)
Q Consensus 79 ~r~~~~~~~aIY~i~Pt~~~i~~i~~d~~~~~~~y~~~~i~F~~~~p~~~~e~l~~~---~~~~~~i~~i~e~~ldf~pl 155 (532)
.|+|+|+++|||||+||.+||++|++||+. |+|+.|||||++.+|+.+++.+++. .++.+.|.++.|+++||+|+
T Consensus 94 ~r~~~~~~~aIYfv~Pt~~ni~~i~~d~~~--~~Y~~~~i~F~~~~~~~lle~la~~~~~~~~~~~i~~v~e~~ldfipl 171 (671)
T 1mqs_A 94 DRSPLPDVPAIYFVSPTKENIDIIVNDLKS--DKYSEFYINFTSSLPRNLLEDLAQQVSITGKSDKIKQVYDQYLDFIVT 171 (671)
T ss_dssp CCCCEEEEEEEEEECSCHHHHHHHHHHHHH--TCEEEEEEEESSCCCHHHHHHHHHHHHTSTTGGGEEEEEECCCCSEEC
T ss_pred CCCCCCCceEEEEeCCCHHHHHHHHHHhhh--cccceEEEEecCCCCHHHHHHHHhhhhhcchhhhcCEEEEEccceeec
Confidence 999999999999999999999999999984 7899999999999999999999873 57889998999999999999
Q ss_pred CCCceEecCcchhhhhhCCCCCccchHHHHHHHHHHHHHHHHHhCCCcEEEEccCCCccccccccccchHHHHHHHHHHH
Q 009533 156 DSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWN 235 (532)
Q Consensus 156 e~~lfsl~~p~~~~~l~~~~~~~~~~~~~l~~ia~~L~~l~~~lg~~P~Ir~~g~~~~~~~~~~~~~~~l~~~la~~l~~ 235 (532)
|+|+|||++|++|..+|.+..|.......++.+|++|+++|.++|++|.|||..+. .|+++|+.+.+
T Consensus 172 e~dlfsL~~p~s~~~l~~~~~~d~~~~~~l~~ia~~L~sl~~~lg~~P~IRy~~g~-------------~a~~va~~L~~ 238 (671)
T 1mqs_A 172 EPELFSLEISNAYLTLNDPKTTEEEITGLCANIADGLFNTVLTINSIPIIRAAKGG-------------PAEIIAEKLGT 238 (671)
T ss_dssp STTEEECCCCSHHHHHHCSSSCTTHHHHHHHHHHHHHHHHHHHHTCCCEEEECSSS-------------HHHHHHHHHHH
T ss_pred cCCEEEecCchHHHHhcCCCccchhHHHHHHHHHHHHHHHHHhcCCCCEEEeCCCC-------------hHHHHHHHHHH
Confidence 99999999999999999977554445578999999999999999999999985442 25667777776
Q ss_pred HHHHhhhhC--CCC------CCCCCeeEEEecCCCCcccccchhhhhhHHHhhhcccCCCeEEEeccCCCC-------CC
Q 009533 236 CLMKYKQSI--ENF------PQTETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTG-------GP 300 (532)
Q Consensus 236 ~l~~~~~~~--~~~------~~~~~~~LiIlDR~~D~iTPLlh~~TYqali~dll~I~~~~v~~~~~~~~g-------~~ 300 (532)
++..+.... ..| +...+++|||+||++|++|||+||||||||+||+|||++|+|+++.+...+ ..
T Consensus 239 ~l~~~~~~~~~~lf~~~~~~~~~~~~~LiIlDR~~DlvTPLlhq~TYqaLi~Dll~I~~n~v~~~~~~~~~~~~~~~~~~ 318 (671)
T 1mqs_A 239 KLRDFVINTNSSSTSTLQGNDSLERGVLIILDRNIDFASMFSHSWIYQCMVFDIFKLSRNTVTIPLESKENGTDNTTAKP 318 (671)
T ss_dssp HHHHHHHTTCC------------CCCEEEEEEGGGCSHHHHCCCCBHHHHHHHHTTCCSSCEEECC--------------
T ss_pred HHHHHHhhccccccccccCCCCCCCCEEEEecCCccchhhhcccchHHHHHHHHhhccCCEEEEeccCCCcccccccccc
Confidence 666553321 123 123578999999999999999999999999999999999999998632211 01
Q ss_pred CcceeEecCCCChHHHHhhcccHHHHHHHHHHHHHHHHHHhHHHHhhh--cc------cCCCCCCHHHHHHHHHhccchH
Q 009533 301 PEKKEVLLEEHDPLWLELRHAHIADASERLHEKMTSFISKNKAAQIQH--SA------RDGGELSTKDLQKMVQALPQYS 372 (532)
Q Consensus 301 ~~~k~~~L~~~D~l~~e~R~~hi~~v~~~l~~~~~~~~~~~~~~~~~~--~~------~~~~~~s~~em~~~v~~Lp~~~ 372 (532)
.++|++.|+++|++|.++||+||++|++.|.+++++|+++++. +++ +. .+....+++||++||++||+|+
T Consensus 319 ~~~k~~~L~~~D~~w~~~r~~~f~~v~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~lk~~V~~LP~~~ 396 (671)
T 1mqs_A 319 LATKKYDIEPNDFFWMENSHLPFPEAAENVEAALNTYKEEAAE--ITRKTGVTNISDLDPNSNNDTVQIQEVVKKLPELT 396 (671)
T ss_dssp -CCEEECCCSSCTTHHHHSSSBHHHHHHHHHHHHHHHHHHHHH--HHHHC--------------------CCCCSCHHHH
T ss_pred ccceEEecCCCCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH--HhcccCccCcccccccccccHHHHHHHHHHhHHHH
Confidence 3458899999999999999999999999999999999987642 221 00 0122467999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHhhcCCCChHHHHHhhhcCCCCChhhHHHHHHHHHHhCCC-CCCchH
Q 009533 373 DQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAGLKDVVKFFTTNEDVSRENKLRLLMILAAIYPE-KFQGEK 451 (532)
Q Consensus 373 ~~~~~l~~H~~la~~i~~~~~~~~l~~~~~lEQ~l~~g~~~~k~l~~~i~~~~~~~~~dkLRLl~Ly~l~~~~-gi~~~~ 451 (532)
++++++++|++||++|++.+++++|.+++++||+|+ |..+.+.++++|.+....+..|||||+|||++++ + |+++++
T Consensus 397 ~~~~~l~~H~~ia~~l~~~i~~~~l~~~~e~EQ~l~-~~~~~~~i~~ll~~~~~~~~~dkLRLl~Ly~l~~-~~g~~~~~ 474 (671)
T 1mqs_A 397 AKKNTIDTHMNIFAALLSQLESKSLDTFFEVEQDPG-STKTRSRFLDILKDGKTNNLEDKLRSFIVLYLTS-TTGLPKDF 474 (671)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHTSCCS-SHHHHHHHHHHTTSCCSTTHHHHHHHHHHHHHHC-SSCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHh-cCchHHHHHHHHhCcCCCCHHHHHHHHHHHHHHc-CCCCCHHH
Confidence 999999999999999999999999999999999997 4433457888997422359999999999999998 6 898776
Q ss_pred ---HHHHHHHcCCChhHHHHHHHHHHh
Q 009533 452 ---GQNIMKLARLQSDDITAVNNMRLL 475 (532)
Q Consensus 452 ---~~~llq~~gl~~~~~~~l~nL~~l 475 (532)
+++++++||++...+..+.++..+
T Consensus 475 ~~~l~~~l~~~G~~~~~~~~l~~~~~l 501 (671)
T 1mqs_A 475 VQNVENYFKENDYDINALKYVYKLREF 501 (671)
T ss_dssp HHHHHHHHHTTTCCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 456678999965555555554443
No 7
>1y9j_A SEC1 family domain containing protein 1; membrane traffic, SLY1, SM proteins, snares, protein protein transport; NMR {Rattus norvegicus}
Probab=99.96 E-value=1.5e-29 Score=227.56 Aligned_cols=133 Identities=25% Similarity=0.455 Sum_probs=119.7
Q ss_pred hhHHHHHHHHHHHHHHHhccCC----CCCCCeEEEEEeccchhhhhhccCchhhhhcCccEEEeccCCCCCCCCCceEEE
Q 009533 16 KNFKQISRERLLYEMLRSAKTG----TSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYF 91 (532)
Q Consensus 16 ~sl~~~~r~~ll~~~l~~v~~~----~~~~~~KvLVlD~~~~~ils~~~~~s~L~e~gV~~v~~l~~~r~~~~~~~aIY~ 91 (532)
.+||+.+|++|+ +||+.+.+. ...++|||||+|+.++++||++|+++||+++||++|+.|+++|+|+|+++||||
T Consensus 20 ~sLr~~qr~~l~-~mL~~~~~~~~~~~~~~~wKVLVlD~~t~~iiS~~~~~sdLl~~gVtlve~i~~~R~p~~~~~aIYf 98 (159)
T 1y9j_A 20 ASIRERQTVALK-RMLNFNVPHVKNSPGEPVWKVLIYDRFGQDIISPLLSVKELRDMGITLHLLLHSDRDPIRDVPAVYF 98 (159)
T ss_dssp CHHHHHHHHHHH-HHTTCCCSCCCSSSSCCCCEEEEECHHHHHHHTTTCCHHHHHHHTEEEEEETTSCCCCBTTSCCEEE
T ss_pred HHHHHHHHHHHH-HHHhccCCcccccccCCCcEEEEEecccHHHHHHHhCHHHHHhCCcEEEeeccCCCCCCCCCCEEEE
Confidence 489999999998 699986532 113579999999999999999999999999999999999999999999999999
Q ss_pred ecCCHHHHHHHHHHhccCCCCcceEEEEecCCCCHHHHHHHHh---cCCcccccceeeEEecc
Q 009533 92 IQPTKENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKK---DSTVLPRIGALREMNLE 151 (532)
Q Consensus 92 i~Pt~~~i~~i~~d~~~~~~~y~~~~i~F~~~~p~~~~e~l~~---~~~~~~~i~~i~e~~ld 151 (532)
|+||.+||++|++||++ |+|++|||||++.+|+.++++|++ +.+....|+.+.|+++|
T Consensus 99 v~Pt~enI~~i~~D~~~--~~Y~~y~i~Ft~~i~~~lle~LA~~~~~~d~~~~V~~V~e~y~d 159 (159)
T 1y9j_A 99 VMPTEENIDRLCQDLRN--QLYESYYLNFISAISRSKLEDIANAALAANAVTQVAKVFDQYLN 159 (159)
T ss_dssp ECCCHHHHHHHHHHHHH--TCBSEEEEEESSCCCHHHHHHHHHHHHTTTCEEEEECCSTTTCC
T ss_pred ecCCHHHHHHHHHHhhh--cccCeEEEEEcCCCCHHHHHHHHhccccCCcccceeeeehhhcC
Confidence 99999999999999984 799999999999999999999997 24677888888887765
No 8
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=47.98 E-value=41 Score=21.61 Aligned_cols=32 Identities=22% Similarity=0.400 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Q 009533 356 LSTKDLQKMVQALPQYSDQIDKLSLHVEIAGK 387 (532)
Q Consensus 356 ~s~~em~~~v~~Lp~~~~~~~~l~~H~~la~~ 387 (532)
.++++++.++..|.+-..+.+++.-|+..+..
T Consensus 3 ntvkelknyiqeleernaelknlkehlkfaka 34 (46)
T 3he4_B 3 NTVKELKNYIQELEERNAELKNLKEHLKFAKA 34 (46)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH
Confidence 47889999999888888888888888877654
No 9
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=24.98 E-value=1.4e+02 Score=20.44 Aligned_cols=31 Identities=32% Similarity=0.439 Sum_probs=17.0
Q ss_pred CHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHH
Q 009533 357 STKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKII 392 (532)
Q Consensus 357 s~~em~~~v~~Lp~~~~~~~~l~~H~~la~~i~~~~ 392 (532)
+..|+..+|..| +++.+.++. .++..|+..+
T Consensus 3 ~~~dLt~~vq~L--L~qmq~kFq---~mS~~I~~ri 33 (48)
T 3ci9_A 3 TVQDLTSVVQTL--LQQMQDKFQ---TISDQIIGRI 33 (48)
T ss_dssp CHHHHHHHHHHH--HHHHHHHHH---HHHHHHHHHH
T ss_pred CHHHHHHHHHHH--HHHHHHHHH---HHHHHHHHHH
Confidence 567777777764 233333333 4566665555
No 10
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=14.66 E-value=2.5e+02 Score=24.08 Aligned_cols=52 Identities=15% Similarity=0.123 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHhCCCCCCchHHHHHHHHcCCChhHH-HHHHHHHHhcCccccCCC
Q 009533 431 NKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDI-TAVNNMRLLGGASDIKKS 484 (532)
Q Consensus 431 dkLRLl~Ly~l~~~~gi~~~~~~~llq~~gl~~~~~-~~l~nL~~lGl~~~~~~~ 484 (532)
.-||.++..+...+++ +- ..++|-+..|+++..+ .++..|.+.|+.....++
T Consensus 28 yAlr~L~~LA~~~~~~-~~-s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~rG~ 80 (159)
T 3lwf_A 28 YGLTITLELAKRIGDG-PI-SLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRGA 80 (159)
T ss_dssp HHHHHHHHHHHTTTSC-CB-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECST
T ss_pred HHHHHHHHHHhcCCCC-Cc-CHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecCC
Confidence 4566666554432222 11 2467888889998765 789999999999877665
Done!