Query 009534
Match_columns 532
No_of_seqs 315 out of 3281
Neff 9.2
Searched_HMMs 46136
Date Thu Mar 28 14:17:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009534.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009534hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2.5E-37 5.5E-42 339.0 25.7 234 13-255 7-266 (889)
2 PLN03210 Resistant to P. syrin 99.9 2.4E-22 5.1E-27 232.1 28.8 101 147-255 184-301 (1153)
3 PF00931 NB-ARC: NB-ARC domain 99.5 5.6E-14 1.2E-18 138.8 12.5 103 152-255 1-106 (287)
4 PLN03210 Resistant to P. syrin 99.4 1.6E-12 3.5E-17 150.8 9.8 165 287-484 627-843 (1153)
5 PLN00113 leucine-rich repeat r 98.8 7.2E-09 1.6E-13 119.7 8.2 183 287-488 157-354 (968)
6 PLN00113 leucine-rich repeat r 98.8 9.7E-09 2.1E-13 118.7 7.6 177 292-485 138-327 (968)
7 KOG0444 Cytoskeletal regulator 98.6 2.5E-09 5.5E-14 109.2 -4.1 61 437-500 311-371 (1255)
8 KOG0444 Cytoskeletal regulator 98.5 2E-08 4.3E-13 102.8 0.5 169 313-510 212-405 (1255)
9 KOG0617 Ras suppressor protein 98.5 2.1E-09 4.6E-14 92.9 -5.8 135 322-486 55-192 (264)
10 KOG4194 Membrane glycoprotein 98.5 1.2E-07 2.6E-12 96.6 5.0 119 279-414 85-230 (873)
11 PRK15386 type III secretion pr 98.4 1.1E-06 2.5E-11 88.3 9.0 32 442-476 156-187 (426)
12 KOG0617 Ras suppressor protein 98.3 6E-08 1.3E-12 84.1 -1.1 137 322-487 32-170 (264)
13 PRK15386 type III secretion pr 98.3 3.1E-06 6.7E-11 85.3 8.6 68 323-413 52-120 (426)
14 PRK00411 cdc6 cell division co 98.2 1.4E-05 3E-10 82.6 13.4 109 146-255 29-142 (394)
15 KOG4194 Membrane glycoprotein 98.2 5.5E-07 1.2E-11 92.0 2.4 133 322-477 268-427 (873)
16 KOG2120 SCF ubiquitin ligase, 98.2 6.4E-08 1.4E-12 91.0 -4.0 133 323-478 234-375 (419)
17 PRK15370 E3 ubiquitin-protein 98.1 2.8E-06 6.1E-11 93.4 5.7 20 233-252 162-181 (754)
18 TIGR02928 orc1/cdc6 family rep 98.1 2.5E-05 5.4E-10 79.9 12.1 101 147-248 15-125 (365)
19 PTZ00202 tuzin; Provisional 98.1 6.3E-05 1.4E-09 75.7 14.1 73 146-227 261-336 (550)
20 PF14580 LRR_9: Leucine-rich r 98.1 1.4E-06 3.1E-11 78.2 1.7 122 325-475 21-149 (175)
21 cd01128 rho_factor Transcripti 98.0 2.5E-05 5.5E-10 74.5 9.2 56 167-224 15-72 (249)
22 PRK09376 rho transcription ter 98.0 2E-05 4.4E-10 78.7 8.0 63 159-223 159-224 (416)
23 PF13855 LRR_8: Leucine rich r 98.0 1.2E-05 2.7E-10 58.9 4.9 60 323-394 1-60 (61)
24 KOG0472 Leucine-rich repeat pr 97.9 2.6E-07 5.6E-12 90.3 -6.2 136 325-489 162-297 (565)
25 KOG0618 Serine/threonine phosp 97.9 1.4E-06 3E-11 93.6 -1.6 89 377-482 377-467 (1081)
26 PF14580 LRR_9: Leucine-rich r 97.9 7.5E-06 1.6E-10 73.6 3.2 108 344-478 15-125 (175)
27 PRK15370 E3 ubiquitin-protein 97.9 2.1E-05 4.5E-10 86.7 7.1 133 324-495 200-332 (754)
28 PF13855 LRR_8: Leucine rich r 97.8 1.7E-05 3.6E-10 58.2 3.6 56 349-415 2-59 (61)
29 TIGR03015 pepcterm_ATPase puta 97.8 0.00049 1.1E-08 67.1 13.9 59 166-228 41-99 (269)
30 TIGR00767 rho transcription te 97.8 0.00014 3E-09 73.2 9.7 58 167-226 167-226 (415)
31 KOG4658 Apoptotic ATPase [Sign 97.7 1.5E-05 3.2E-10 89.3 3.0 82 1-82 1-84 (889)
32 PF13191 AAA_16: AAA ATPase do 97.7 4.8E-05 1E-09 69.5 5.4 44 149-192 2-48 (185)
33 PRK15387 E3 ubiquitin-protein 97.7 9E-05 1.9E-09 81.5 8.1 153 295-484 223-379 (788)
34 PF13401 AAA_22: AAA domain; P 97.6 0.00012 2.6E-09 62.7 6.6 83 167-252 3-88 (131)
35 PRK15387 E3 ubiquitin-protein 97.6 0.00016 3.5E-09 79.5 8.6 97 324-460 223-319 (788)
36 cd00116 LRR_RI Leucine-rich re 97.6 1.3E-05 2.9E-10 80.1 -0.1 14 439-452 218-231 (319)
37 KOG0618 Serine/threonine phosp 97.6 8.7E-06 1.9E-10 87.7 -1.4 108 322-455 382-489 (1081)
38 PRK11331 5-methylcytosine-spec 97.6 0.00038 8.3E-09 71.2 9.9 69 147-218 175-243 (459)
39 KOG3207 Beta-tubulin folding c 97.5 2.8E-05 6.1E-10 77.2 1.3 85 381-473 244-333 (505)
40 PF01637 Arch_ATPase: Archaeal 97.5 0.00011 2.4E-09 69.7 4.0 44 149-192 1-44 (234)
41 cd00009 AAA The AAA+ (ATPases 97.4 0.00058 1.3E-08 59.2 7.6 59 150-211 1-59 (151)
42 PRK08118 topology modulation p 97.3 0.00014 3.1E-09 65.3 3.2 35 169-204 2-37 (167)
43 cd00116 LRR_RI Leucine-rich re 97.3 5.5E-05 1.2E-09 75.6 0.3 137 323-477 137-289 (319)
44 KOG1259 Nischarin, modulator o 97.3 3.8E-05 8.2E-10 72.7 -1.2 32 382-413 328-360 (490)
45 KOG0472 Leucine-rich repeat pr 97.2 2.3E-05 5E-10 77.0 -3.2 110 344-478 431-540 (565)
46 COG1474 CDC6 Cdc6-related prot 97.2 0.0033 7.2E-08 63.7 11.6 105 147-255 17-127 (366)
47 KOG4341 F-box protein containi 97.2 8.9E-05 1.9E-09 73.4 0.2 179 325-523 270-466 (483)
48 KOG3665 ZYG-1-like serine/thre 97.2 9.9E-05 2.1E-09 80.6 0.5 34 381-414 171-204 (699)
49 KOG3207 Beta-tubulin folding c 97.2 6.3E-05 1.4E-09 74.8 -1.2 162 290-478 142-313 (505)
50 KOG1259 Nischarin, modulator o 97.0 7.5E-05 1.6E-09 70.7 -1.9 131 290-453 280-410 (490)
51 PTZ00112 origin recognition co 97.0 0.0056 1.2E-07 67.0 11.3 100 146-247 754-863 (1164)
52 TIGR00635 ruvB Holliday juncti 97.0 0.00084 1.8E-08 66.8 4.8 46 147-192 4-54 (305)
53 PF12799 LRR_4: Leucine Rich r 96.9 0.00096 2.1E-08 45.1 3.1 39 383-422 1-40 (44)
54 PF05729 NACHT: NACHT domain 96.9 0.0038 8.2E-08 55.6 8.0 55 169-224 1-62 (166)
55 PF05496 RuvB_N: Holliday junc 96.9 0.0013 2.9E-08 60.8 4.8 46 147-192 24-74 (233)
56 PLN03150 hypothetical protein; 96.9 0.0013 2.8E-08 72.0 5.6 91 380-483 439-532 (623)
57 KOG2004 Mitochondrial ATP-depe 96.8 0.016 3.4E-07 61.7 12.7 63 147-215 411-479 (906)
58 KOG0532 Leucine-rich repeat (L 96.8 0.0002 4.4E-09 73.5 -1.0 142 325-498 123-270 (722)
59 COG0466 Lon ATP-dependent Lon 96.8 0.02 4.3E-07 61.1 12.8 46 147-192 323-374 (782)
60 PRK13342 recombination factor 96.7 0.0028 6.1E-08 65.8 6.4 46 147-192 12-60 (413)
61 KOG4341 F-box protein containi 96.7 0.0004 8.8E-09 68.9 -0.2 145 323-484 294-444 (483)
62 smart00763 AAA_PrkA PrkA AAA d 96.7 0.0024 5.1E-08 63.7 5.1 46 147-192 51-102 (361)
63 TIGR02903 spore_lon_C ATP-depe 96.7 0.033 7.1E-07 60.7 14.2 61 147-208 154-217 (615)
64 PRK00080 ruvB Holliday junctio 96.6 0.0024 5.1E-08 64.2 4.8 46 147-192 25-75 (328)
65 PRK12727 flagellar biosynthesi 96.6 0.1 2.2E-06 54.8 16.7 85 167-255 349-434 (559)
66 PLN03150 hypothetical protein; 96.6 0.0025 5.5E-08 69.7 5.2 91 384-487 419-511 (623)
67 PRK07261 topology modulation p 96.6 0.0056 1.2E-07 55.2 6.6 35 170-205 2-37 (171)
68 PF13207 AAA_17: AAA domain; P 96.5 0.0021 4.6E-08 54.1 3.4 23 170-192 1-23 (121)
69 PF12061 DUF3542: Protein of u 96.5 0.0046 9.9E-08 59.1 5.6 102 9-119 296-400 (402)
70 PF05621 TniB: Bacterial TniB 96.4 0.061 1.3E-06 52.3 13.0 106 147-255 34-151 (302)
71 KOG2543 Origin recognition com 96.4 0.027 6E-07 55.7 10.4 74 146-225 5-81 (438)
72 KOG1947 Leucine rich repeat pr 96.3 0.00029 6.4E-09 74.6 -4.0 136 323-479 243-389 (482)
73 PRK06696 uridine kinase; Valid 96.3 0.0069 1.5E-07 57.2 5.6 41 152-192 3-46 (223)
74 KOG0532 Leucine-rich repeat (L 96.3 0.00063 1.4E-08 70.1 -1.7 154 286-476 113-270 (722)
75 KOG0744 AAA+-type ATPase [Post 96.2 0.021 4.5E-07 55.3 8.4 75 168-255 177-253 (423)
76 COG4886 Leucine-rich repeat (L 96.2 0.0036 7.8E-08 64.7 3.7 78 324-415 141-219 (394)
77 KOG2739 Leucine-rich acidic nu 96.2 0.0016 3.5E-08 61.0 1.0 107 322-452 42-153 (260)
78 KOG2028 ATPase related to the 96.2 0.013 2.9E-07 57.4 7.1 46 159-209 153-198 (554)
79 COG2256 MGS1 ATPase related to 96.2 0.011 2.3E-07 59.0 6.5 45 148-192 25-72 (436)
80 PRK12402 replication factor C 96.2 0.0065 1.4E-07 61.3 5.1 46 147-192 15-60 (337)
81 PRK05564 DNA polymerase III su 96.1 0.037 7.9E-07 55.3 10.2 69 147-215 4-77 (313)
82 PRK00440 rfc replication facto 96.1 0.021 4.6E-07 57.0 8.5 46 147-192 17-62 (319)
83 PRK15455 PrkA family serine pr 96.1 0.0069 1.5E-07 63.7 5.0 45 148-192 77-127 (644)
84 CHL00095 clpC Clp protease ATP 96.1 0.0063 1.4E-07 68.8 5.1 46 147-192 179-224 (821)
85 TIGR03420 DnaA_homol_Hda DnaA 96.1 0.01 2.2E-07 56.1 5.8 55 152-209 22-76 (226)
86 KOG2120 SCF ubiquitin ligase, 96.1 0.0002 4.4E-09 67.9 -5.7 158 322-499 209-374 (419)
87 KOG1947 Leucine rich repeat pr 96.1 0.00054 1.2E-08 72.6 -3.5 37 382-418 268-308 (482)
88 PRK06547 hypothetical protein; 96.1 0.01 2.2E-07 53.5 5.2 36 157-192 4-39 (172)
89 PF05659 RPW8: Arabidopsis bro 96.1 0.04 8.6E-07 48.0 8.6 114 2-124 2-115 (147)
90 KOG2982 Uncharacterized conser 96.0 0.005 1.1E-07 58.7 3.1 182 290-499 93-287 (418)
91 TIGR03345 VI_ClpV1 type VI sec 96.0 0.0081 1.8E-07 67.8 5.2 46 147-192 187-232 (852)
92 PF12799 LRR_4: Leucine Rich r 96.0 0.0052 1.1E-07 41.5 2.1 33 324-358 2-34 (44)
93 KOG1644 U2-associated snRNP A' 95.9 0.0098 2.1E-07 53.7 4.4 104 325-452 44-150 (233)
94 KOG0991 Replication factor C, 95.9 0.013 2.7E-07 54.1 5.0 72 147-220 27-99 (333)
95 PLN03025 replication factor C 95.9 0.026 5.7E-07 56.4 7.9 46 147-192 13-58 (319)
96 PRK10865 protein disaggregatio 95.9 0.0099 2.1E-07 67.3 5.3 46 147-192 178-223 (857)
97 KOG3864 Uncharacterized conser 95.9 0.001 2.2E-08 59.9 -2.1 66 344-418 121-189 (221)
98 TIGR02639 ClpA ATP-dependent C 95.8 0.01 2.3E-07 66.2 5.2 46 147-192 182-227 (731)
99 COG0572 Udk Uridine kinase [Nu 95.8 0.031 6.7E-07 51.6 7.2 26 167-192 7-32 (218)
100 PRK08181 transposase; Validate 95.8 0.49 1.1E-05 45.8 15.8 41 161-206 101-141 (269)
101 PRK13341 recombination factor 95.8 0.012 2.6E-07 64.9 5.3 46 147-192 28-76 (725)
102 PRK12608 transcription termina 95.8 0.088 1.9E-06 53.0 10.9 69 157-227 121-192 (380)
103 KOG3665 ZYG-1-like serine/thre 95.7 0.0045 9.8E-08 67.9 1.7 105 293-414 147-259 (699)
104 COG0542 clpA ATP-binding subun 95.7 0.25 5.3E-06 54.4 14.8 98 147-255 491-597 (786)
105 PRK03992 proteasome-activating 95.7 0.012 2.5E-07 60.6 4.6 46 147-192 131-189 (389)
106 TIGR01242 26Sp45 26S proteasom 95.7 0.013 2.8E-07 59.8 4.9 46 147-192 122-180 (364)
107 COG1618 Predicted nucleotide k 95.7 0.013 2.9E-07 50.9 4.1 36 168-205 5-40 (179)
108 PRK04195 replication factor C 95.7 0.0095 2.1E-07 63.2 3.9 46 147-192 14-63 (482)
109 PF13173 AAA_14: AAA domain 95.6 0.016 3.4E-07 49.5 4.4 38 168-209 2-39 (128)
110 TIGR00763 lon ATP-dependent pr 95.6 0.067 1.5E-06 60.2 10.6 46 147-192 320-371 (775)
111 PHA00729 NTP-binding motif con 95.6 0.018 4E-07 53.7 5.0 35 158-192 7-41 (226)
112 COG1102 Cmk Cytidylate kinase 95.6 0.03 6.6E-07 48.7 5.8 75 170-258 2-83 (179)
113 PRK09270 nucleoside triphospha 95.6 0.019 4.2E-07 54.4 5.2 27 166-192 31-57 (229)
114 PRK08233 hypothetical protein; 95.5 0.013 2.8E-07 53.2 3.7 25 168-192 3-27 (182)
115 KOG4237 Extracellular matrix p 95.5 0.0011 2.5E-08 65.3 -3.4 123 325-473 69-195 (498)
116 PF13238 AAA_18: AAA domain; P 95.5 0.011 2.5E-07 50.0 3.1 21 171-191 1-21 (129)
117 TIGR03346 chaperone_ClpB ATP-d 95.5 0.017 3.8E-07 65.5 5.3 46 147-192 173-218 (852)
118 PRK07667 uridine kinase; Provi 95.5 0.02 4.4E-07 52.7 4.8 37 156-192 3-41 (193)
119 PRK13531 regulatory ATPase Rav 95.5 0.043 9.4E-07 57.0 7.6 44 147-192 20-63 (498)
120 PRK05480 uridine/cytidine kina 95.5 0.014 3E-07 54.5 3.8 27 166-192 4-30 (209)
121 COG1428 Deoxynucleoside kinase 95.5 0.013 2.8E-07 53.5 3.3 25 168-192 4-28 (216)
122 PRK14962 DNA polymerase III su 95.5 0.02 4.4E-07 60.1 5.3 46 147-192 14-60 (472)
123 PF00485 PRK: Phosphoribulokin 95.4 0.012 2.7E-07 54.2 3.3 23 170-192 1-23 (194)
124 TIGR02881 spore_V_K stage V sp 95.4 0.021 4.6E-07 55.3 4.9 45 148-192 7-66 (261)
125 PRK05541 adenylylsulfate kinas 95.4 0.02 4.3E-07 51.8 4.5 36 167-205 6-41 (176)
126 smart00382 AAA ATPases associa 95.4 0.084 1.8E-06 44.9 8.3 39 168-209 2-40 (148)
127 PRK10536 hypothetical protein; 95.4 0.091 2E-06 50.0 8.8 44 147-192 55-98 (262)
128 PRK14961 DNA polymerase III su 95.3 0.026 5.5E-07 57.6 5.5 46 147-192 16-62 (363)
129 COG2255 RuvB Holliday junction 95.3 0.024 5.3E-07 53.9 4.8 46 147-192 26-76 (332)
130 TIGR03499 FlhF flagellar biosy 95.3 0.082 1.8E-06 51.8 8.8 85 167-255 193-278 (282)
131 TIGR00554 panK_bact pantothena 95.3 0.13 2.8E-06 50.3 10.0 27 166-192 60-86 (290)
132 PF00448 SRP54: SRP54-type pro 95.3 0.083 1.8E-06 48.7 8.2 85 168-255 1-89 (196)
133 PHA02544 44 clamp loader, smal 95.3 0.024 5.1E-07 56.7 5.0 46 147-192 21-67 (316)
134 PRK14722 flhF flagellar biosyn 95.3 0.068 1.5E-06 54.1 8.2 85 167-255 136-221 (374)
135 PRK14963 DNA polymerase III su 95.2 0.019 4.2E-07 60.8 4.3 46 147-192 14-60 (504)
136 PRK06762 hypothetical protein; 95.2 0.019 4.1E-07 51.4 3.6 25 168-192 2-26 (166)
137 TIGR00235 udk uridine kinase. 95.2 0.02 4.2E-07 53.5 3.7 26 167-192 5-30 (207)
138 PTZ00301 uridine kinase; Provi 95.2 0.02 4.3E-07 53.4 3.7 25 168-192 3-27 (210)
139 PF06309 Torsin: Torsin; Inte 95.2 0.04 8.7E-07 46.2 5.1 47 147-193 25-78 (127)
140 KOG2123 Uncharacterized conser 95.1 0.0013 2.9E-08 61.9 -4.1 84 347-455 18-101 (388)
141 cd02019 NK Nucleoside/nucleoti 95.1 0.02 4.4E-07 42.9 3.0 23 170-192 1-23 (69)
142 PRK14956 DNA polymerase III su 95.1 0.029 6.3E-07 58.3 5.0 46 147-192 18-64 (484)
143 PRK00771 signal recognition pa 95.1 0.15 3.3E-06 52.9 10.2 86 167-255 94-181 (437)
144 cd02025 PanK Pantothenate kina 95.0 0.13 2.9E-06 48.3 9.0 23 170-192 1-23 (220)
145 KOG2227 Pre-initiation complex 95.0 0.24 5.3E-06 50.5 11.0 104 146-252 149-256 (529)
146 COG1222 RPT1 ATP-dependent 26S 95.0 0.038 8.3E-07 54.3 5.1 46 147-192 151-209 (406)
147 PRK08903 DnaA regulatory inact 94.9 0.046 9.9E-07 51.7 5.7 43 150-192 22-66 (227)
148 TIGR01360 aden_kin_iso1 adenyl 94.9 0.024 5.1E-07 51.8 3.6 26 167-192 2-27 (188)
149 TIGR00390 hslU ATP-dependent p 94.9 0.081 1.8E-06 53.9 7.6 46 147-192 12-71 (441)
150 PRK11034 clpA ATP-dependent Cl 94.9 0.03 6.5E-07 62.1 4.9 46 147-192 186-231 (758)
151 COG4886 Leucine-rich repeat (L 94.8 0.02 4.4E-07 59.1 3.1 128 322-479 162-290 (394)
152 KOG3864 Uncharacterized conser 94.8 0.0041 9E-08 56.1 -1.7 66 381-458 123-192 (221)
153 PRK14957 DNA polymerase III su 94.8 0.04 8.6E-07 58.7 5.3 46 147-192 16-62 (546)
154 PF00308 Bac_DnaA: Bacterial d 94.8 0.18 3.9E-06 47.4 9.1 89 149-255 11-103 (219)
155 PRK10787 DNA-binding ATP-depen 94.8 0.31 6.7E-06 54.6 12.4 47 146-192 321-373 (784)
156 PRK08084 DNA replication initi 94.8 0.088 1.9E-06 50.1 7.1 58 149-209 25-83 (235)
157 PRK03839 putative kinase; Prov 94.7 0.027 5.9E-07 51.1 3.4 23 170-192 2-24 (180)
158 PRK14960 DNA polymerase III su 94.7 0.043 9.3E-07 59.1 5.1 46 147-192 15-61 (702)
159 PF13671 AAA_33: AAA domain; P 94.7 0.029 6.4E-07 48.6 3.4 23 170-192 1-23 (143)
160 PF00004 AAA: ATPase family as 94.6 0.031 6.8E-07 47.5 3.3 22 171-192 1-22 (132)
161 PTZ00454 26S protease regulato 94.6 0.05 1.1E-06 55.9 5.4 46 147-192 145-203 (398)
162 TIGR02237 recomb_radB DNA repa 94.6 0.072 1.6E-06 49.6 6.0 49 167-219 11-59 (209)
163 COG1223 Predicted ATPase (AAA+ 94.6 0.047 1E-06 51.3 4.5 46 147-192 121-175 (368)
164 PRK05439 pantothenate kinase; 94.6 0.32 6.9E-06 48.0 10.6 83 166-251 84-166 (311)
165 PRK04841 transcriptional regul 94.6 0.3 6.5E-06 56.3 12.3 68 147-225 14-83 (903)
166 PRK14955 DNA polymerase III su 94.6 0.048 1E-06 56.3 5.1 46 147-192 16-62 (397)
167 PRK05896 DNA polymerase III su 94.6 0.046 1E-06 58.5 5.1 46 147-192 16-62 (605)
168 PRK08727 hypothetical protein; 94.5 0.1 2.2E-06 49.6 6.9 59 148-209 20-79 (233)
169 PRK04040 adenylate kinase; Pro 94.5 0.034 7.5E-07 50.9 3.5 25 168-192 2-26 (188)
170 cd01393 recA_like RecA is a b 94.5 0.33 7.3E-06 45.7 10.5 48 167-217 18-71 (226)
171 CHL00181 cbbX CbbX; Provisiona 94.5 0.067 1.5E-06 52.5 5.7 45 148-192 24-83 (287)
172 PRK11889 flhF flagellar biosyn 94.5 0.19 4.2E-06 50.9 9.0 83 167-255 240-326 (436)
173 cd02023 UMPK Uridine monophosp 94.5 0.028 6.1E-07 51.9 2.9 23 170-192 1-23 (198)
174 PRK10865 protein disaggregatio 94.5 2 4.3E-05 49.0 18.0 46 147-192 568-622 (857)
175 PRK07003 DNA polymerase III su 94.4 0.14 3.1E-06 55.9 8.4 46 147-192 16-62 (830)
176 PRK13765 ATP-dependent proteas 94.4 0.089 1.9E-06 57.2 6.8 75 147-226 31-105 (637)
177 KOG4237 Extracellular matrix p 94.4 0.014 3E-07 57.9 0.6 80 322-413 273-354 (498)
178 PRK08116 hypothetical protein; 94.4 0.15 3.3E-06 49.5 7.8 70 169-255 115-184 (268)
179 TIGR00150 HI0065_YjeE ATPase, 94.3 0.077 1.7E-06 45.4 5.0 39 154-192 6-46 (133)
180 PTZ00361 26 proteosome regulat 94.3 0.066 1.4E-06 55.5 5.4 46 147-192 183-241 (438)
181 PF03205 MobB: Molybdopterin g 94.3 0.061 1.3E-06 46.6 4.4 39 169-209 1-39 (140)
182 TIGR02902 spore_lonB ATP-depen 94.3 0.084 1.8E-06 56.6 6.3 45 148-192 66-110 (531)
183 PRK06893 DNA replication initi 94.2 0.078 1.7E-06 50.2 5.4 39 167-208 38-76 (229)
184 PF07728 AAA_5: AAA domain (dy 94.2 0.11 2.4E-06 44.8 6.0 43 171-219 2-44 (139)
185 PRK05201 hslU ATP-dependent pr 94.2 0.14 2.9E-06 52.4 7.2 46 147-192 15-74 (443)
186 PRK14949 DNA polymerase III su 94.2 0.06 1.3E-06 59.8 4.9 46 147-192 16-62 (944)
187 CHL00081 chlI Mg-protoporyphyr 94.2 0.062 1.4E-06 53.9 4.7 46 147-192 17-62 (350)
188 TIGR00764 lon_rel lon-related 94.1 0.16 3.5E-06 55.3 8.2 75 147-226 18-92 (608)
189 cd02028 UMPK_like Uridine mono 94.1 0.12 2.5E-06 47.0 6.1 23 170-192 1-23 (179)
190 PRK14964 DNA polymerase III su 94.1 0.066 1.4E-06 56.2 5.0 45 147-191 13-58 (491)
191 PRK12724 flagellar biosynthesi 94.1 0.16 3.5E-06 51.9 7.6 25 168-192 223-247 (432)
192 cd02024 NRK1 Nicotinamide ribo 94.1 0.041 8.8E-07 50.2 2.9 23 170-192 1-23 (187)
193 PF13306 LRR_5: Leucine rich r 94.1 0.16 3.6E-06 42.8 6.6 76 323-413 12-89 (129)
194 PRK00625 shikimate kinase; Pro 94.1 0.045 9.7E-07 49.3 3.2 23 170-192 2-24 (173)
195 cd01123 Rad51_DMC1_radA Rad51_ 94.1 0.16 3.4E-06 48.3 7.1 51 167-218 18-72 (235)
196 TIGR02880 cbbX_cfxQ probable R 94.0 0.1 2.3E-06 51.1 5.9 45 148-192 23-82 (284)
197 PRK13975 thymidylate kinase; P 94.0 0.051 1.1E-06 50.0 3.5 24 169-192 3-26 (196)
198 PRK00131 aroK shikimate kinase 94.0 0.054 1.2E-06 48.7 3.6 25 168-192 4-28 (175)
199 TIGR02322 phosphon_PhnN phosph 94.0 0.051 1.1E-06 49.3 3.4 24 169-192 2-25 (179)
200 COG1703 ArgK Putative periplas 94.0 0.071 1.5E-06 51.3 4.4 62 157-219 38-101 (323)
201 PF02562 PhoH: PhoH-like prote 93.9 0.052 1.1E-06 50.1 3.4 53 151-206 4-56 (205)
202 PRK14951 DNA polymerase III su 93.9 0.079 1.7E-06 57.3 5.3 46 147-192 16-62 (618)
203 PRK12377 putative replication 93.9 0.26 5.6E-06 47.2 8.2 70 167-255 100-169 (248)
204 TIGR00073 hypB hydrogenase acc 93.9 0.068 1.5E-06 49.8 4.2 31 162-192 16-46 (207)
205 COG3899 Predicted ATPase [Gene 93.9 0.17 3.8E-06 57.2 8.1 45 148-192 1-48 (849)
206 PRK12726 flagellar biosynthesi 93.9 0.36 7.8E-06 48.7 9.4 84 167-255 205-291 (407)
207 PRK06217 hypothetical protein; 93.9 0.05 1.1E-06 49.6 3.2 23 170-192 3-25 (183)
208 PRK10751 molybdopterin-guanine 93.9 0.062 1.3E-06 48.2 3.7 26 167-192 5-30 (173)
209 PRK07952 DNA replication prote 93.9 3.4 7.3E-05 39.5 15.7 70 168-255 99-168 (244)
210 cd02020 CMPK Cytidine monophos 93.9 0.048 1E-06 47.4 3.0 23 170-192 1-23 (147)
211 PRK06645 DNA polymerase III su 93.9 0.071 1.5E-06 56.4 4.6 46 147-192 21-67 (507)
212 TIGR01359 UMP_CMP_kin_fam UMP- 93.8 0.047 1E-06 49.7 3.0 23 170-192 1-23 (183)
213 PRK10463 hydrogenase nickel in 93.8 0.16 3.5E-06 49.4 6.7 33 160-192 96-128 (290)
214 PRK14970 DNA polymerase III su 93.8 0.09 1.9E-06 53.8 5.3 46 147-192 17-63 (367)
215 KOG2739 Leucine-rich acidic nu 93.8 0.033 7.1E-07 52.4 1.8 134 325-484 20-161 (260)
216 PRK08691 DNA polymerase III su 93.8 0.08 1.7E-06 57.5 5.0 46 147-192 16-62 (709)
217 TIGR02397 dnaX_nterm DNA polym 93.8 0.091 2E-06 53.4 5.3 46 147-192 14-60 (355)
218 PF01583 APS_kinase: Adenylyls 93.8 0.07 1.5E-06 46.9 3.8 36 168-206 2-37 (156)
219 PF00625 Guanylate_kin: Guanyl 93.8 0.098 2.1E-06 47.6 4.9 36 168-206 2-37 (183)
220 PF07726 AAA_3: ATPase family 93.8 0.046 1E-06 46.0 2.5 28 171-201 2-29 (131)
221 TIGR02030 BchI-ChlI magnesium 93.8 0.1 2.2E-06 52.3 5.3 46 147-192 4-49 (337)
222 PRK14958 DNA polymerase III su 93.7 0.081 1.8E-06 56.2 4.9 46 147-192 16-62 (509)
223 PRK00889 adenylylsulfate kinas 93.7 0.067 1.5E-06 48.3 3.7 26 167-192 3-28 (175)
224 PRK12323 DNA polymerase III su 93.7 0.081 1.7E-06 56.9 4.7 46 147-192 16-62 (700)
225 PF13504 LRR_7: Leucine rich r 93.7 0.047 1E-06 28.5 1.6 17 466-483 1-17 (17)
226 PRK06995 flhF flagellar biosyn 93.7 0.29 6.3E-06 51.3 8.7 83 168-255 256-340 (484)
227 TIGR03689 pup_AAA proteasome A 93.7 0.08 1.7E-06 55.9 4.6 46 147-192 182-240 (512)
228 PF03308 ArgK: ArgK protein; 93.7 0.081 1.8E-06 50.1 4.2 63 155-218 14-78 (266)
229 cd01672 TMPK Thymidine monopho 93.7 0.15 3.1E-06 46.9 6.0 23 170-192 2-24 (200)
230 PRK14721 flhF flagellar biosyn 93.7 0.43 9.4E-06 49.2 9.8 85 167-255 190-275 (420)
231 TIGR03263 guanyl_kin guanylate 93.6 0.055 1.2E-06 49.0 3.0 24 169-192 2-25 (180)
232 PRK12723 flagellar biosynthesi 93.6 0.43 9.3E-06 48.8 9.5 84 167-255 173-260 (388)
233 PRK13947 shikimate kinase; Pro 93.5 0.062 1.3E-06 48.3 3.1 23 170-192 3-25 (171)
234 PF08477 Miro: Miro-like prote 93.5 0.068 1.5E-06 44.6 3.2 22 171-192 2-23 (119)
235 PF13306 LRR_5: Leucine rich r 93.5 0.23 5E-06 41.9 6.6 114 340-484 4-119 (129)
236 PRK09361 radB DNA repair and r 93.5 0.26 5.6E-06 46.5 7.5 46 167-216 22-67 (225)
237 PRK09087 hypothetical protein; 93.5 0.16 3.5E-06 48.0 5.9 26 167-192 43-68 (226)
238 PRK05703 flhF flagellar biosyn 93.5 0.24 5.1E-06 51.5 7.6 83 168-255 221-305 (424)
239 PF00158 Sigma54_activat: Sigm 93.5 0.11 2.4E-06 46.5 4.6 44 149-192 1-46 (168)
240 PF00910 RNA_helicase: RNA hel 93.5 0.058 1.3E-06 44.4 2.6 22 171-192 1-22 (107)
241 COG0467 RAD55 RecA-superfamily 93.4 0.19 4E-06 48.7 6.5 50 167-221 22-71 (260)
242 PRK13949 shikimate kinase; Pro 93.4 0.068 1.5E-06 48.0 3.2 23 170-192 3-25 (169)
243 cd02021 GntK Gluconate kinase 93.4 0.062 1.4E-06 47.1 2.9 23 170-192 1-23 (150)
244 KOG0989 Replication factor C, 93.4 0.14 3E-06 49.5 5.3 62 147-209 36-98 (346)
245 PRK14954 DNA polymerase III su 93.4 0.1 2.2E-06 56.6 5.0 46 147-192 16-62 (620)
246 cd00227 CPT Chloramphenicol (C 93.4 0.071 1.5E-06 48.2 3.3 24 169-192 3-26 (175)
247 KOG3347 Predicted nucleotide k 93.4 0.13 2.8E-06 44.3 4.5 68 169-249 8-75 (176)
248 COG0488 Uup ATPase components 93.4 0.13 2.8E-06 54.7 5.7 26 167-192 347-372 (530)
249 PRK07940 DNA polymerase III su 93.4 0.12 2.6E-06 53.1 5.2 46 147-192 5-60 (394)
250 PRK09111 DNA polymerase III su 93.4 0.11 2.3E-06 56.3 5.0 46 147-192 24-70 (598)
251 PRK00300 gmk guanylate kinase; 93.3 0.071 1.5E-06 49.5 3.3 26 167-192 4-29 (205)
252 cd01878 HflX HflX subfamily. 93.3 0.27 5.8E-06 45.5 7.1 27 166-192 39-65 (204)
253 COG1936 Predicted nucleotide k 93.3 0.066 1.4E-06 47.3 2.7 20 170-189 2-21 (180)
254 COG0542 clpA ATP-binding subun 93.3 0.097 2.1E-06 57.4 4.6 46 147-192 170-215 (786)
255 PRK07994 DNA polymerase III su 93.2 0.11 2.4E-06 56.4 5.0 46 147-192 16-62 (647)
256 PRK03846 adenylylsulfate kinas 93.2 0.089 1.9E-06 48.6 3.7 27 166-192 22-48 (198)
257 PF05673 DUF815: Protein of un 93.2 0.28 6.1E-06 46.3 7.0 46 147-192 27-76 (249)
258 COG0003 ArsA Predicted ATPase 93.2 0.17 3.6E-06 50.3 5.8 49 168-219 2-50 (322)
259 PRK14723 flhF flagellar biosyn 93.2 0.38 8.3E-06 53.1 9.0 83 168-255 185-269 (767)
260 COG3640 CooC CO dehydrogenase 93.2 0.17 3.8E-06 47.0 5.4 43 170-214 2-44 (255)
261 PRK14969 DNA polymerase III su 93.2 0.12 2.5E-06 55.4 5.0 46 147-192 16-62 (527)
262 PRK04220 2-phosphoglycerate ki 93.2 0.29 6.3E-06 47.9 7.3 27 166-192 90-116 (301)
263 PRK15453 phosphoribulokinase; 93.1 0.59 1.3E-05 45.3 9.2 78 167-248 4-88 (290)
264 COG1484 DnaC DNA replication p 93.1 0.7 1.5E-05 44.5 9.8 70 167-255 104-173 (254)
265 cd00464 SK Shikimate kinase (S 93.1 0.08 1.7E-06 46.5 3.1 22 171-192 2-23 (154)
266 PRK14952 DNA polymerase III su 93.1 0.12 2.7E-06 55.6 5.0 46 147-192 13-59 (584)
267 PF13245 AAA_19: Part of AAA d 93.1 0.22 4.7E-06 38.1 5.1 26 167-192 9-35 (76)
268 PRK06851 hypothetical protein; 93.1 1.4 3E-05 44.6 12.2 50 150-205 200-249 (367)
269 COG0125 Tmk Thymidylate kinase 93.1 0.22 4.7E-06 46.2 6.0 49 168-219 3-51 (208)
270 cd01120 RecA-like_NTPases RecA 93.0 0.12 2.6E-06 45.5 4.2 39 170-211 1-39 (165)
271 PLN02924 thymidylate kinase 93.0 0.23 4.9E-06 46.7 6.2 53 168-222 16-68 (220)
272 KOG1532 GTPase XAB1, interacts 93.0 0.1 2.3E-06 49.3 3.8 86 167-255 18-121 (366)
273 cd00071 GMPK Guanosine monopho 93.0 0.08 1.7E-06 45.7 2.8 23 170-192 1-23 (137)
274 KOG1859 Leucine-rich repeat pr 93.0 0.0087 1.9E-07 63.7 -3.7 109 286-416 179-290 (1096)
275 PF13086 AAA_11: AAA domain; P 93.0 0.23 4.9E-06 46.8 6.2 53 170-222 19-75 (236)
276 COG1224 TIP49 DNA helicase TIP 93.0 0.23 5.1E-06 48.9 6.2 54 147-201 39-97 (450)
277 PRK14530 adenylate kinase; Pro 93.0 0.088 1.9E-06 49.4 3.3 23 170-192 5-27 (215)
278 TIGR00041 DTMP_kinase thymidyl 92.9 0.25 5.3E-06 45.4 6.3 24 169-192 4-27 (195)
279 PRK12339 2-phosphoglycerate ki 92.9 0.11 2.3E-06 48.0 3.7 25 168-192 3-27 (197)
280 PRK05057 aroK shikimate kinase 92.9 0.099 2.1E-06 47.1 3.5 25 168-192 4-28 (172)
281 COG0563 Adk Adenylate kinase a 92.9 0.088 1.9E-06 47.7 3.1 23 170-192 2-24 (178)
282 PRK05642 DNA replication initi 92.9 0.25 5.4E-06 47.0 6.4 38 168-208 45-82 (234)
283 TIGR01287 nifH nitrogenase iro 92.9 0.1 2.2E-06 50.9 3.9 40 169-211 1-40 (275)
284 PRK10078 ribose 1,5-bisphospho 92.9 0.084 1.8E-06 48.2 3.1 24 169-192 3-26 (186)
285 PF03193 DUF258: Protein of un 92.9 0.14 3E-06 45.3 4.2 36 154-192 24-59 (161)
286 TIGR00362 DnaA chromosomal rep 92.9 0.33 7.2E-06 50.3 7.8 50 168-224 136-185 (405)
287 PRK06305 DNA polymerase III su 92.9 0.16 3.4E-06 53.3 5.3 46 147-192 17-63 (451)
288 cd01394 radB RadB. The archaea 92.9 0.41 9E-06 44.8 7.8 43 167-212 18-60 (218)
289 TIGR01313 therm_gnt_kin carboh 92.9 0.077 1.7E-06 47.2 2.7 22 171-192 1-22 (163)
290 cd03115 SRP The signal recogni 92.8 0.4 8.7E-06 43.1 7.4 23 170-192 2-24 (173)
291 PF13604 AAA_30: AAA domain; P 92.8 0.17 3.6E-06 46.8 4.8 36 157-192 7-42 (196)
292 KOG1909 Ran GTPase-activating 92.8 0.027 5.9E-07 55.0 -0.4 173 286-477 84-281 (382)
293 PRK13695 putative NTPase; Prov 92.8 0.13 2.8E-06 46.4 4.0 34 170-205 2-35 (174)
294 PF08298 AAA_PrkA: PrkA AAA do 92.7 0.19 4E-06 50.0 5.2 74 147-226 61-147 (358)
295 PRK12422 chromosomal replicati 92.7 0.38 8.3E-06 50.3 7.9 24 169-192 142-165 (445)
296 PRK13946 shikimate kinase; Pro 92.7 0.1 2.2E-06 47.6 3.3 25 168-192 10-34 (184)
297 PF04665 Pox_A32: Poxvirus A32 92.7 0.17 3.7E-06 47.9 4.7 36 169-207 14-49 (241)
298 TIGR00176 mobB molybdopterin-g 92.6 0.097 2.1E-06 46.3 2.9 23 170-192 1-23 (155)
299 KOG0733 Nuclear AAA ATPase (VC 92.6 0.19 4.1E-06 52.9 5.3 46 147-192 190-247 (802)
300 PRK13407 bchI magnesium chelat 92.6 0.16 3.4E-06 50.9 4.7 46 147-192 8-53 (334)
301 PRK14527 adenylate kinase; Pro 92.6 0.12 2.6E-06 47.5 3.6 26 167-192 5-30 (191)
302 TIGR02012 tigrfam_recA protein 92.6 0.3 6.4E-06 48.5 6.5 74 167-248 54-130 (321)
303 PF00005 ABC_tran: ABC transpo 92.5 0.093 2E-06 45.1 2.7 25 168-192 11-35 (137)
304 PRK14950 DNA polymerase III su 92.5 0.17 3.7E-06 55.0 5.3 46 147-192 16-62 (585)
305 KOG1909 Ran GTPase-activating 92.5 0.023 4.9E-07 55.6 -1.3 139 323-478 157-310 (382)
306 COG1100 GTPase SAR1 and relate 92.5 0.089 1.9E-06 49.2 2.7 25 169-193 6-30 (219)
307 PF03266 NTPase_1: NTPase; In 92.5 0.11 2.4E-06 46.6 3.1 22 171-192 2-23 (168)
308 PF05970 PIF1: PIF1-like helic 92.5 0.33 7.2E-06 49.5 7.0 102 155-260 9-114 (364)
309 PRK13948 shikimate kinase; Pro 92.5 0.14 3E-06 46.6 3.7 26 167-192 9-34 (182)
310 PRK00698 tmk thymidylate kinas 92.5 0.3 6.4E-06 45.2 6.1 25 168-192 3-27 (205)
311 PRK04182 cytidylate kinase; Pr 92.4 0.12 2.6E-06 46.7 3.4 23 170-192 2-24 (180)
312 PRK14737 gmk guanylate kinase; 92.4 0.13 2.9E-06 46.9 3.6 26 167-192 3-28 (186)
313 COG1124 DppF ABC-type dipeptid 92.4 0.11 2.3E-06 48.7 3.0 26 167-192 32-57 (252)
314 PRK09112 DNA polymerase III su 92.4 0.23 4.9E-06 50.2 5.6 47 147-193 23-70 (351)
315 cd03269 ABC_putative_ATPase Th 92.4 0.17 3.7E-06 47.2 4.5 26 167-192 25-50 (210)
316 PF13504 LRR_7: Leucine rich r 92.4 0.081 1.8E-06 27.6 1.3 15 384-398 2-16 (17)
317 PRK06835 DNA replication prote 92.4 8 0.00017 38.7 16.5 37 168-207 183-219 (329)
318 TIGR01241 FtsH_fam ATP-depende 92.4 0.17 3.6E-06 54.0 4.9 46 147-192 55-112 (495)
319 TIGR00960 3a0501s02 Type II (G 92.4 0.17 3.6E-06 47.5 4.4 35 167-205 28-62 (216)
320 PRK06761 hypothetical protein; 92.4 0.18 3.8E-06 49.1 4.6 24 169-192 4-27 (282)
321 PF13521 AAA_28: AAA domain; P 92.4 0.11 2.4E-06 46.3 3.0 21 171-191 2-22 (163)
322 TIGR00064 ftsY signal recognit 92.3 0.2 4.4E-06 48.7 5.0 39 167-208 71-109 (272)
323 COG0194 Gmk Guanylate kinase [ 92.3 0.14 3E-06 45.9 3.5 25 168-192 4-28 (191)
324 cd03255 ABC_MJ0796_Lo1CDE_FtsE 92.3 0.17 3.7E-06 47.4 4.4 26 167-192 29-54 (218)
325 cd02029 PRK_like Phosphoribulo 92.3 0.69 1.5E-05 44.4 8.3 79 170-251 1-85 (277)
326 cd00983 recA RecA is a bacter 92.3 0.31 6.7E-06 48.4 6.2 75 167-249 54-131 (325)
327 cd03229 ABC_Class3 This class 92.3 0.19 4.1E-06 45.5 4.5 26 167-192 25-50 (178)
328 cd04139 RalA_RalB RalA/RalB su 92.3 0.11 2.5E-06 45.7 3.0 23 170-192 2-24 (164)
329 COG2019 AdkA Archaeal adenylat 92.2 0.13 2.8E-06 45.2 3.0 25 168-192 4-28 (189)
330 TIGR01166 cbiO cobalt transpor 92.2 0.19 4E-06 46.1 4.4 26 167-192 17-42 (190)
331 PLN02200 adenylate kinase fami 92.2 0.15 3.2E-06 48.5 3.8 26 167-192 42-67 (234)
332 cd01124 KaiC KaiC is a circadi 92.2 0.32 7E-06 44.1 6.0 44 171-219 2-45 (187)
333 TIGR02640 gas_vesic_GvpN gas v 92.2 0.52 1.1E-05 45.7 7.6 55 155-217 10-64 (262)
334 PRK13976 thymidylate kinase; P 92.2 0.32 6.8E-06 45.4 5.9 23 170-192 2-24 (209)
335 PRK06620 hypothetical protein; 92.2 0.12 2.7E-06 48.3 3.2 24 169-192 45-68 (214)
336 TIGR02673 FtsE cell division A 92.2 0.18 3.9E-06 47.1 4.4 35 167-205 27-61 (214)
337 PRK14087 dnaA chromosomal repl 92.1 0.47 1E-05 49.8 7.7 72 168-255 141-212 (450)
338 TIGR00602 rad24 checkpoint pro 92.1 0.18 3.9E-06 54.8 4.7 46 147-192 84-134 (637)
339 COG1763 MobB Molybdopterin-gua 92.1 0.12 2.7E-06 45.6 2.9 25 168-192 2-26 (161)
340 PRK14738 gmk guanylate kinase; 92.1 0.14 3.1E-06 47.6 3.5 25 167-191 12-36 (206)
341 TIGR02173 cyt_kin_arch cytidyl 92.1 0.14 3.1E-06 45.7 3.4 23 170-192 2-24 (171)
342 cd03265 ABC_DrrA DrrA is the A 92.1 0.2 4.3E-06 47.1 4.5 35 167-205 25-59 (220)
343 PRK00149 dnaA chromosomal repl 92.1 0.51 1.1E-05 49.7 8.0 25 168-192 148-172 (450)
344 cd00820 PEPCK_HprK Phosphoenol 92.0 0.15 3.2E-06 41.7 3.1 22 168-189 15-36 (107)
345 COG0237 CoaE Dephospho-CoA kin 92.0 0.14 3.1E-06 47.2 3.3 23 168-190 2-24 (201)
346 cd02027 APSK Adenosine 5'-phos 92.0 0.13 2.7E-06 45.2 2.9 23 170-192 1-23 (149)
347 PF01078 Mg_chelatase: Magnesi 92.0 0.27 6E-06 45.2 5.1 44 147-192 3-46 (206)
348 COG4240 Predicted kinase [Gene 92.0 0.94 2E-05 42.0 8.4 84 166-252 48-135 (300)
349 TIGR00959 ffh signal recogniti 92.0 0.68 1.5E-05 48.0 8.6 86 167-255 98-188 (428)
350 PF02374 ArsA_ATPase: Anion-tr 92.0 0.21 4.5E-06 49.5 4.7 24 169-192 2-25 (305)
351 PRK09354 recA recombinase A; P 92.0 0.4 8.6E-06 48.1 6.6 75 167-249 59-136 (349)
352 PRK14088 dnaA chromosomal repl 91.9 0.55 1.2E-05 49.1 8.0 37 168-206 130-167 (440)
353 COG1126 GlnQ ABC-type polar am 91.9 0.22 4.8E-06 45.8 4.3 36 167-206 27-62 (240)
354 cd01983 Fer4_NifH The Fer4_Nif 91.9 0.14 3.1E-06 40.5 2.9 23 170-192 1-23 (99)
355 cd02117 NifH_like This family 91.9 0.14 3E-06 47.9 3.2 24 169-192 1-24 (212)
356 PRK14971 DNA polymerase III su 91.9 0.57 1.2E-05 51.1 8.3 46 147-192 17-63 (614)
357 cd03225 ABC_cobalt_CbiO_domain 91.9 0.2 4.4E-06 46.6 4.3 26 167-192 26-51 (211)
358 KOG0727 26S proteasome regulat 91.9 0.35 7.7E-06 45.3 5.6 45 148-192 156-213 (408)
359 PRK09825 idnK D-gluconate kina 91.9 0.15 3.3E-06 46.1 3.3 24 169-192 4-27 (176)
360 PRK13768 GTPase; Provisional 91.8 0.15 3.3E-06 49.0 3.5 24 169-192 3-26 (253)
361 PLN02165 adenylate isopentenyl 91.8 0.16 3.5E-06 50.3 3.7 30 163-192 38-67 (334)
362 PRK08154 anaerobic benzoate ca 91.8 0.25 5.4E-06 49.1 5.1 26 167-192 132-157 (309)
363 cd03116 MobB Molybdenum is an 91.8 0.17 3.7E-06 44.9 3.5 24 169-192 2-25 (159)
364 PRK08099 bifunctional DNA-bind 91.8 0.14 3.1E-06 52.6 3.4 27 166-192 217-243 (399)
365 KOG0531 Protein phosphatase 1, 91.8 0.068 1.5E-06 55.6 1.1 103 290-414 91-195 (414)
366 PHA02244 ATPase-like protein 91.8 0.37 8.1E-06 48.4 6.2 37 154-192 107-143 (383)
367 PF06068 TIP49: TIP49 C-termin 91.7 0.35 7.5E-06 48.4 5.8 46 147-192 24-74 (398)
368 cd03264 ABC_drug_resistance_li 91.7 0.2 4.3E-06 46.7 4.1 32 170-205 27-58 (211)
369 cd03222 ABC_RNaseL_inhibitor T 91.7 0.24 5.1E-06 44.9 4.4 26 167-192 24-49 (177)
370 PRK05342 clpX ATP-dependent pr 91.7 0.15 3.3E-06 52.6 3.5 46 147-192 71-132 (412)
371 cd03297 ABC_ModC_molybdenum_tr 91.7 0.23 5E-06 46.4 4.5 26 166-192 22-47 (214)
372 PRK14493 putative bifunctional 91.7 0.15 3.3E-06 49.5 3.3 35 169-207 2-36 (274)
373 cd01122 GP4d_helicase GP4d_hel 91.7 1.5 3.3E-05 42.6 10.4 53 168-224 30-82 (271)
374 cd03293 ABC_NrtD_SsuB_transpor 91.7 0.23 4.9E-06 46.7 4.5 26 167-192 29-54 (220)
375 TIGR03574 selen_PSTK L-seryl-t 91.7 0.13 2.8E-06 49.4 2.9 23 170-192 1-23 (249)
376 PRK03731 aroL shikimate kinase 91.7 0.16 3.4E-06 45.6 3.2 24 169-192 3-26 (171)
377 PLN03046 D-glycerate 3-kinase; 91.7 0.54 1.2E-05 48.0 7.2 26 167-192 211-236 (460)
378 TIGR00101 ureG urease accessor 91.7 0.3 6.6E-06 45.1 5.1 24 169-192 2-25 (199)
379 PRK14948 DNA polymerase III su 91.7 0.24 5.3E-06 53.9 5.2 46 147-192 16-62 (620)
380 PF01926 MMR_HSR1: 50S ribosom 91.7 0.15 3.2E-06 42.5 2.8 21 171-191 2-22 (116)
381 PRK04301 radA DNA repair and r 91.7 0.71 1.5E-05 46.1 8.2 57 167-225 101-161 (317)
382 smart00173 RAS Ras subfamily o 91.7 0.15 3.3E-06 45.1 3.0 23 170-192 2-24 (164)
383 PLN02348 phosphoribulokinase 91.7 0.18 4E-06 51.0 3.9 27 166-192 47-73 (395)
384 PRK07471 DNA polymerase III su 91.6 0.27 5.8E-06 50.0 5.1 47 147-193 19-66 (365)
385 cd01862 Rab7 Rab7 subfamily. 91.6 0.14 3E-06 45.7 2.8 23 170-192 2-24 (172)
386 KOG0652 26S proteasome regulat 91.6 0.34 7.3E-06 45.6 5.3 53 140-192 162-229 (424)
387 PLN02796 D-glycerate 3-kinase 91.6 0.18 3.9E-06 50.3 3.7 26 167-192 99-124 (347)
388 PF10443 RNA12: RNA12 protein; 91.6 0.67 1.4E-05 47.3 7.8 68 152-226 1-72 (431)
389 PRK09435 membrane ATPase/prote 91.6 0.44 9.6E-06 47.6 6.5 36 157-192 43-80 (332)
390 cd03221 ABCF_EF-3 ABCF_EF-3 E 91.6 0.25 5.4E-06 43.1 4.3 26 167-192 25-50 (144)
391 cd03263 ABC_subfamily_A The AB 91.6 0.23 5E-06 46.6 4.4 26 167-192 27-52 (220)
392 TIGR01243 CDC48 AAA family ATP 91.6 0.2 4.4E-06 56.1 4.6 46 147-192 178-236 (733)
393 TIGR02211 LolD_lipo_ex lipopro 91.6 0.23 5E-06 46.6 4.4 35 167-205 30-64 (221)
394 cd04155 Arl3 Arl3 subfamily. 91.6 0.24 5.1E-06 44.3 4.3 25 167-191 13-37 (173)
395 TIGR03864 PQQ_ABC_ATP ABC tran 91.6 0.24 5.2E-06 47.1 4.5 26 167-192 26-51 (236)
396 cd01673 dNK Deoxyribonucleosid 91.6 0.15 3.2E-06 46.8 3.0 23 170-192 1-23 (193)
397 cd04119 RJL RJL (RabJ-Like) su 91.6 0.15 3.3E-06 45.1 3.0 22 171-192 3-24 (168)
398 PF03215 Rad17: Rad17 cell cyc 91.6 0.3 6.4E-06 51.9 5.5 54 148-206 20-78 (519)
399 COG1419 FlhF Flagellar GTP-bin 91.6 1.7 3.7E-05 44.1 10.5 98 154-255 185-287 (407)
400 cd03226 ABC_cobalt_CbiO_domain 91.6 0.24 5.2E-06 45.9 4.4 26 167-192 25-50 (205)
401 PRK13973 thymidylate kinase; P 91.5 0.49 1.1E-05 44.2 6.4 24 169-192 4-27 (213)
402 KOG0734 AAA+-type ATPase conta 91.5 0.26 5.6E-06 51.1 4.7 46 147-192 304-361 (752)
403 PLN00020 ribulose bisphosphate 91.5 0.19 4.2E-06 50.3 3.7 26 167-192 147-172 (413)
404 cd02022 DPCK Dephospho-coenzym 91.5 0.15 3.3E-06 46.2 2.9 21 170-190 1-21 (179)
405 PF03029 ATP_bind_1: Conserved 91.4 0.17 3.7E-06 48.2 3.3 20 173-192 1-20 (238)
406 TIGR01189 ccmA heme ABC export 91.4 0.25 5.5E-06 45.5 4.4 35 167-205 25-59 (198)
407 PRK13540 cytochrome c biogenes 91.4 0.26 5.7E-06 45.5 4.5 36 167-206 26-61 (200)
408 PRK14953 DNA polymerase III su 91.4 0.31 6.8E-06 51.5 5.5 46 147-192 16-62 (486)
409 PRK08939 primosomal protein Dn 91.4 0.85 1.8E-05 45.2 8.2 85 151-255 135-223 (306)
410 PRK10867 signal recognition pa 91.4 0.85 1.8E-05 47.3 8.5 86 167-255 99-189 (433)
411 PRK10584 putative ABC transpor 91.4 0.26 5.6E-06 46.6 4.5 26 167-192 35-60 (228)
412 cd03301 ABC_MalK_N The N-termi 91.4 0.26 5.7E-06 46.0 4.5 26 167-192 25-50 (213)
413 TIGR03608 L_ocin_972_ABC putat 91.4 0.27 5.8E-06 45.6 4.5 25 168-192 24-48 (206)
414 PRK13232 nifH nitrogenase redu 91.3 0.17 3.7E-06 49.4 3.3 25 169-193 2-26 (273)
415 cd01428 ADK Adenylate kinase ( 91.3 0.17 3.8E-06 46.3 3.2 22 171-192 2-23 (194)
416 cd03261 ABC_Org_Solvent_Resist 91.3 0.26 5.6E-06 46.9 4.4 26 167-192 25-50 (235)
417 PRK13230 nitrogenase reductase 91.3 0.17 3.7E-06 49.5 3.3 25 169-193 2-26 (279)
418 PF14532 Sigma54_activ_2: Sigm 91.3 0.21 4.6E-06 43.1 3.5 43 150-192 1-45 (138)
419 cd03230 ABC_DR_subfamily_A Thi 91.3 0.28 6.1E-06 44.1 4.4 26 167-192 25-50 (173)
420 TIGR02315 ABC_phnC phosphonate 91.3 0.25 5.5E-06 47.2 4.4 26 167-192 27-52 (243)
421 COG0703 AroK Shikimate kinase 91.3 0.21 4.6E-06 44.5 3.4 23 170-192 4-26 (172)
422 PRK13236 nitrogenase reductase 91.2 0.2 4.3E-06 49.5 3.7 28 165-192 3-30 (296)
423 PRK07764 DNA polymerase III su 91.2 0.27 5.8E-06 55.2 5.0 46 147-192 15-61 (824)
424 KOG0730 AAA+-type ATPase [Post 91.2 0.75 1.6E-05 49.1 7.9 51 147-200 434-497 (693)
425 cd03266 ABC_NatA_sodium_export 91.2 0.26 5.7E-06 46.2 4.3 35 167-205 30-64 (218)
426 COG1120 FepC ABC-type cobalami 91.2 0.18 3.9E-06 48.2 3.1 26 167-192 27-52 (258)
427 PRK07133 DNA polymerase III su 91.2 0.31 6.8E-06 53.4 5.4 46 147-192 18-64 (725)
428 cd03259 ABC_Carb_Solutes_like 91.2 0.28 6.1E-06 45.8 4.5 26 167-192 25-50 (213)
429 TIGR00750 lao LAO/AO transport 91.2 0.33 7.2E-06 48.0 5.2 27 166-192 32-58 (300)
430 PRK11629 lolD lipoprotein tran 91.2 0.28 6.1E-06 46.5 4.5 26 167-192 34-59 (233)
431 TIGR02639 ClpA ATP-dependent C 91.2 0.48 1E-05 53.1 7.0 46 147-192 454-508 (731)
432 PRK14965 DNA polymerase III su 91.1 0.32 6.9E-06 52.7 5.4 46 147-192 16-62 (576)
433 cd03296 ABC_CysA_sulfate_impor 91.1 0.27 5.9E-06 46.8 4.4 26 167-192 27-52 (239)
434 PF10662 PduV-EutP: Ethanolami 91.1 0.19 4.1E-06 43.4 2.9 24 169-192 2-25 (143)
435 cd03114 ArgK-like The function 91.1 0.18 3.9E-06 44.2 2.9 23 170-192 1-23 (148)
436 COG3903 Predicted ATPase [Gene 91.1 0.24 5.2E-06 49.9 4.1 80 167-255 13-93 (414)
437 cd02040 NifH NifH gene encodes 91.1 0.18 3.8E-06 49.0 3.2 42 169-213 2-43 (270)
438 TIGR00017 cmk cytidylate kinas 91.1 0.2 4.4E-06 46.9 3.4 24 169-192 3-26 (217)
439 cd03235 ABC_Metallic_Cations A 91.1 0.25 5.3E-06 46.2 4.0 26 167-192 24-49 (213)
440 PRK13538 cytochrome c biogenes 91.1 0.28 6E-06 45.5 4.3 26 167-192 26-51 (204)
441 PRK01184 hypothetical protein; 91.1 0.2 4.3E-06 45.6 3.2 23 169-192 2-24 (184)
442 PRK14532 adenylate kinase; Pro 91.1 0.19 4.1E-06 45.9 3.2 22 171-192 3-24 (188)
443 cd03256 ABC_PhnC_transporter A 91.1 0.27 5.8E-06 46.9 4.3 26 167-192 26-51 (241)
444 cd03224 ABC_TM1139_LivF_branch 91.1 0.26 5.7E-06 46.3 4.2 26 167-192 25-50 (222)
445 cd03267 ABC_NatA_like Similar 91.0 0.29 6.2E-06 46.6 4.4 26 167-192 46-71 (236)
446 cd01131 PilT Pilus retraction 91.0 0.31 6.8E-06 45.0 4.5 24 169-192 2-25 (198)
447 PRK11124 artP arginine transpo 91.0 0.29 6.3E-06 46.7 4.5 35 167-205 27-61 (242)
448 PRK10247 putative ABC transpor 91.0 0.29 6.3E-06 46.2 4.4 26 167-192 32-57 (225)
449 PRK06647 DNA polymerase III su 91.0 0.3 6.6E-06 52.5 5.0 46 147-192 16-62 (563)
450 TIGR01277 thiQ thiamine ABC tr 91.0 0.29 6.3E-06 45.7 4.4 26 167-192 23-48 (213)
451 KOG1969 DNA replication checkp 91.0 0.48 1E-05 51.0 6.3 53 167-225 325-377 (877)
452 cd03218 ABC_YhbG The ABC trans 91.0 0.28 6.1E-06 46.5 4.3 26 167-192 25-50 (232)
453 cd04153 Arl5_Arl8 Arl5/Arl8 su 91.0 0.29 6.3E-06 44.0 4.2 35 158-192 5-39 (174)
454 smart00072 GuKc Guanylate kina 91.0 0.27 5.8E-06 44.8 4.0 25 168-192 2-26 (184)
455 PRK05537 bifunctional sulfate 91.0 0.38 8.2E-06 51.9 5.7 47 146-192 368-416 (568)
456 TIGR02236 recomb_radA DNA repa 90.9 1.1 2.4E-05 44.6 8.7 57 167-225 94-154 (310)
457 PTZ00088 adenylate kinase 1; P 90.9 0.2 4.3E-06 47.4 3.2 23 170-192 8-30 (229)
458 PRK11248 tauB taurine transpor 90.9 0.29 6.2E-06 47.2 4.4 26 167-192 26-51 (255)
459 PRK10416 signal recognition pa 90.9 0.23 5E-06 49.5 3.7 26 167-192 113-138 (318)
460 COG1121 ZnuC ABC-type Mn/Zn tr 90.9 0.3 6.4E-06 46.5 4.3 25 168-192 30-54 (254)
461 cd03292 ABC_FtsE_transporter F 90.9 0.32 6.8E-06 45.4 4.5 26 167-192 26-51 (214)
462 cd03295 ABC_OpuCA_Osmoprotecti 90.8 0.3 6.5E-06 46.7 4.4 26 167-192 26-51 (242)
463 PRK14250 phosphate ABC transpo 90.8 0.3 6.5E-06 46.6 4.4 26 167-192 28-53 (241)
464 TIGR01184 ntrCD nitrate transp 90.8 0.3 6.5E-06 46.3 4.3 25 168-192 11-35 (230)
465 PRK07933 thymidylate kinase; V 90.8 0.21 4.6E-06 46.7 3.2 23 170-192 2-24 (213)
466 PRK13235 nifH nitrogenase redu 90.8 0.27 5.9E-06 47.9 4.2 25 169-193 2-26 (274)
467 cd03246 ABCC_Protease_Secretio 90.8 0.35 7.6E-06 43.5 4.6 26 167-192 27-52 (173)
468 PF07693 KAP_NTPase: KAP famil 90.8 1.1 2.3E-05 44.8 8.6 73 154-227 3-83 (325)
469 PRK13541 cytochrome c biogenes 90.8 0.32 7E-06 44.7 4.4 26 167-192 25-50 (195)
470 PRK09183 transposase/IS protei 90.8 0.2 4.3E-06 48.4 3.1 25 168-192 102-126 (259)
471 COG3638 ABC-type phosphate/pho 90.8 0.57 1.2E-05 43.7 5.8 26 167-192 29-54 (258)
472 PRK08356 hypothetical protein; 90.8 0.22 4.7E-06 45.9 3.2 21 168-188 5-25 (195)
473 cd04113 Rab4 Rab4 subfamily. 90.7 0.21 4.4E-06 44.1 3.0 22 171-192 3-24 (161)
474 KOG0736 Peroxisome assembly fa 90.7 0.73 1.6E-05 50.0 7.3 46 147-192 672-729 (953)
475 KOG1644 U2-associated snRNP A' 90.7 0.31 6.7E-06 44.3 3.9 83 322-415 63-150 (233)
476 cd04138 H_N_K_Ras_like H-Ras/N 90.7 0.21 4.6E-06 43.8 3.0 23 170-192 3-25 (162)
477 TIGR02324 CP_lyasePhnL phospho 90.7 0.33 7.1E-06 45.7 4.5 36 167-206 33-68 (224)
478 PRK14959 DNA polymerase III su 90.7 0.35 7.6E-06 52.2 5.1 46 147-192 16-62 (624)
479 COG0714 MoxR-like ATPases [Gen 90.7 0.72 1.6E-05 46.3 7.2 65 147-219 24-88 (329)
480 TIGR03877 thermo_KaiC_1 KaiC d 90.7 0.98 2.1E-05 43.0 7.8 49 167-220 20-68 (237)
481 PRK09493 glnQ glutamine ABC tr 90.7 0.32 7E-06 46.3 4.5 35 167-205 26-60 (240)
482 COG1875 NYN ribonuclease and A 90.7 0.33 7.1E-06 48.1 4.4 39 150-188 227-265 (436)
483 PRK10908 cell division protein 90.7 0.34 7.3E-06 45.6 4.5 35 167-205 27-61 (222)
484 PLN02318 phosphoribulokinase/u 90.6 0.23 5.1E-06 52.8 3.6 27 166-192 63-89 (656)
485 PRK11247 ssuB aliphatic sulfon 90.6 0.33 7.2E-06 46.8 4.5 26 167-192 37-62 (257)
486 cd04159 Arl10_like Arl10-like 90.6 0.18 3.9E-06 43.9 2.5 22 171-192 2-23 (159)
487 TIGR02528 EutP ethanolamine ut 90.6 0.18 4E-06 43.4 2.5 23 170-192 2-24 (142)
488 PRK14531 adenylate kinase; Pro 90.6 0.24 5.3E-06 45.0 3.4 24 169-192 3-26 (183)
489 cd02026 PRK Phosphoribulokinas 90.6 0.2 4.3E-06 48.8 2.9 23 170-192 1-23 (273)
490 PRK11034 clpA ATP-dependent Cl 90.6 0.39 8.5E-06 53.5 5.5 46 147-192 458-512 (758)
491 PRK06526 transposase; Provisio 90.6 0.21 4.5E-06 48.1 3.0 25 168-192 98-122 (254)
492 cd04163 Era Era subfamily. Er 90.6 0.23 5E-06 43.6 3.1 24 168-191 3-26 (168)
493 smart00175 RAB Rab subfamily o 90.6 0.21 4.5E-06 44.1 2.8 22 171-192 3-24 (164)
494 cd00876 Ras Ras family. The R 90.6 0.21 4.7E-06 43.7 2.9 21 171-191 2-22 (160)
495 TIGR00231 small_GTP small GTP- 90.5 0.2 4.4E-06 43.3 2.7 23 170-192 3-25 (161)
496 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 90.5 0.34 7.4E-06 45.7 4.4 26 167-192 47-72 (224)
497 cd03219 ABC_Mj1267_LivG_branch 90.5 0.31 6.7E-06 46.3 4.1 26 167-192 25-50 (236)
498 cd03216 ABC_Carb_Monos_I This 90.5 0.38 8.3E-06 42.8 4.5 35 167-205 25-59 (163)
499 COG1116 TauB ABC-type nitrate/ 90.5 0.24 5.1E-06 46.7 3.1 26 167-192 28-53 (248)
500 TIGR00382 clpX endopeptidase C 90.5 0.47 1E-05 48.9 5.6 46 147-192 77-140 (413)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-37 Score=338.96 Aligned_cols=234 Identities=35% Similarity=0.609 Sum_probs=197.2
Q ss_pred hHHHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhc-
Q 009534 13 GTISRCLDCIVSKAGYICHLKDNLYALRTDFQKLIEARNDVQIRVIVAEQRQMRRLQQVQGWLSRVQDVEKEVPRLSRK- 91 (532)
Q Consensus 13 ~v~~kl~~~~~~~~~~~~~~~~~~~~L~~~l~~l~~~l~~v~~~i~~ae~~~~~~~~~~~~Wl~~lr~~~~d~ed~id~- 91 (532)
..++++.+++.++...+.+.++++..|++++..++.++.| |++++.. ...+..|.+.+++++|++||+++.
T Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d-------~~a~~~~-~~~~~~~~e~~~~~~~~~e~~~~~~ 78 (889)
T KOG4658|consen 7 FGVEKLDQLLNRESECLDGKDNYILELKENLKALQSALED-------LDAKRDD-LERRVNWEEDVGDLVYLAEDIIWLF 78 (889)
T ss_pred EehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-------HHhhcch-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777788888889999999999999999999999998 6666653 488999999999999999999988
Q ss_pred ----------------------cccCCCCCCchhhhchHHHHHHHHHHHHHHHHhcCCCCcccc-cCCCCCCCCCCCCCc
Q 009534 92 ----------------------INLGGFCSGNCVERYKDGKRVVELLKNVQSLRKEGDFKDVAQ-TVPENPVDERPLPPT 148 (532)
Q Consensus 92 ----------------------~~~~~~~~~~~~~r~~i~~~i~~i~~~i~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~ 148 (532)
.|..++|......-+.+++++-++.++++.+..++.|..++. ..+......+|..+.
T Consensus 79 ~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~ 158 (889)
T KOG4658|consen 79 LVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSE 158 (889)
T ss_pred HHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcc
Confidence 112245666777777888999999999998888776766664 233334444444343
Q ss_pred c-cccHHHHHHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhccC-CCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcC
Q 009534 149 V-VGLQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLH-TPNNFDFVIWEVVSRDLQLGKIQESIAKKIGL 226 (532)
Q Consensus 149 ~-vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~ 226 (532)
. ||.+..++++.+.|.+++..++||+||||+||||||+.+||+. . ++++||.++||.||+.++...++++|+..++.
T Consensus 159 ~~VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~-~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~ 237 (889)
T KOG4658|consen 159 SDVGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKF-DEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGL 237 (889)
T ss_pred ccccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhccc-chhcccCceEEEEEEcccccHHhHHHHHHHHhcc
Confidence 3 9999999999999999888999999999999999999999999 6 99999999999999999999999999999998
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCcEEEe
Q 009534 227 CNESWDSKSFDEKAQEIFKTMRNTKFLIS 255 (532)
Q Consensus 227 ~~~~~~~~~~~~~~~~l~~~L~~kr~LlV 255 (532)
....+.....++.+..|.+.|++|||+||
T Consensus 238 ~~~~~~~~~~~~~~~~i~~~L~~krfllv 266 (889)
T KOG4658|consen 238 LDEEWEDKEEDELASKLLNLLEGKRFLLV 266 (889)
T ss_pred CCcccchhhHHHHHHHHHHHhccCceEEE
Confidence 66555555668899999999999999999
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=2.4e-22 Score=232.05 Aligned_cols=101 Identities=20% Similarity=0.314 Sum_probs=72.4
Q ss_pred CcccccHHHHHHHHHHhc--cCCceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEe---CCC-----------
Q 009534 147 PTVVGLQSTLDRVWRCLT--EEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVV---SRD----------- 210 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v---~~~----------- 210 (532)
+++||++++++++.++|. .+++++|+||||||+||||||+++|++. ..+|++.+|+.. +..
T Consensus 184 ~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l---~~~F~g~vfv~~~~v~~~~~~~~~~~~~~ 260 (1153)
T PLN03210 184 EDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL---SRQFQSSVFIDRAFISKSMEIYSSANPDD 260 (1153)
T ss_pred ccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH---hhcCCeEEEeeccccccchhhcccccccc
Confidence 568999999999999885 3479999999999999999999999988 478999988742 111
Q ss_pred CC-HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhcCCcEEEe
Q 009534 211 LQ-LGKIQESIAKKIGLCNESWDSKSFDEKAQEIFKTMRNTKFLIS 255 (532)
Q Consensus 211 ~~-~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlV 255 (532)
++ ...++++++..+..... ..... ...+++.++++|+|||
T Consensus 261 ~~~~~~l~~~~l~~il~~~~-~~~~~----~~~~~~~L~~krvLLV 301 (1153)
T PLN03210 261 YNMKLHLQRAFLSEILDKKD-IKIYH----LGAMEERLKHRKVLIF 301 (1153)
T ss_pred cchhHHHHHHHHHHHhCCCC-cccCC----HHHHHHHHhCCeEEEE
Confidence 01 23455566655543211 01111 2457788889999988
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.53 E-value=5.6e-14 Score=138.75 Aligned_cols=103 Identities=28% Similarity=0.533 Sum_probs=91.2
Q ss_pred cHHHHHHHHHHhcc--CCceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC
Q 009534 152 LQSTLDRVWRCLTE--EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQLGKIQESIAKKIGLCNE 229 (532)
Q Consensus 152 r~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~ 229 (532)
||.++++|.++|.+ ++.++|+|+||||+||||||+.+|++. .++++|+.++|+.+++..+...+++.|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~-~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDL-RIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHH-HHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccc-cccccccccccccccccccccccccccccccccccc
Confidence 78999999999988 789999999999999999999999996 467999999999999999999999999999988743
Q ss_pred CC-CCCCHHHHHHHHHHHhcCCcEEEe
Q 009534 230 SW-DSKSFDEKAQEIFKTMRNTKFLIS 255 (532)
Q Consensus 230 ~~-~~~~~~~~~~~l~~~L~~kr~LlV 255 (532)
.. ...+.......+.+.|+++++|+|
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlV 106 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLV 106 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEE
T ss_pred ccccccccccccccchhhhccccceee
Confidence 33 566788899999999999999999
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.35 E-value=1.6e-12 Score=150.82 Aligned_cols=165 Identities=25% Similarity=0.409 Sum_probs=91.7
Q ss_pred hhhhcCCccCceeeEEeccchhHHHhhcCCcccccccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeee
Q 009534 287 VEELLGLKHLNVLTITLHSFAALQRLLTYPSLQSIVSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEI 366 (532)
Q Consensus 287 ~~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~ 366 (532)
+++...+++|+.|+ +..+..+..++.. ..+++|+.|++.+|..+..+|.. +.++++|+.|++++|..++.+|.
T Consensus 627 ~~~~~~l~~Lk~L~--Ls~~~~l~~ip~l----s~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L~~Lp~ 699 (1153)
T PLN03210 627 WDGVHSLTGLRNID--LRGSKNLKEIPDL----SMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENLEILPT 699 (1153)
T ss_pred ccccccCCCCCEEE--CCCCCCcCcCCcc----ccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCcCccCC
Confidence 33445566666666 3344334444321 12456777777777777777654 66677777777777777766655
Q ss_pred cccCCccccccccCCCCCccEEEEeCC-ccccCCch--------------------hcC---------------------
Q 009534 367 DYAGGEVKRIRETHGFFSLHKVSIWGS-KLRHVTWL--------------------ILA--------------------- 404 (532)
Q Consensus 367 ~~~~~~~~~~~~~~~l~~L~~L~l~~c-~L~~l~~l--------------------~~l--------------------- 404 (532)
.. ++++|++|++++| .+..+|.. ..+
T Consensus 700 ~i------------~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~ 767 (1153)
T PLN03210 700 GI------------NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQ 767 (1153)
T ss_pred cC------------CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhcccccc
Confidence 32 2445555555555 44433311 111
Q ss_pred ----------CCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccccCCCCcCCCCccEEeec
Q 009534 405 ----------PNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIYPRALPFPHLKELHVT 474 (532)
Q Consensus 405 ----------~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~ 474 (532)
++|+.|++++|+.+.++|. .+..+++|+.|++.+|++++.+|... .+++|+.|+++
T Consensus 768 ~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~-------------si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls 833 (1153)
T PLN03210 768 PLTPLMTMLSPSLTRLFLSDIPSLVELPS-------------SIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLS 833 (1153)
T ss_pred ccchhhhhccccchheeCCCCCCccccCh-------------hhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECC
Confidence 1222333333332223322 55667777777777777777776544 56777777777
Q ss_pred CCCCCCCCCC
Q 009534 475 LCPKLKKLPF 484 (532)
Q Consensus 475 ~C~~L~~lp~ 484 (532)
+|.+++.+|.
T Consensus 834 ~c~~L~~~p~ 843 (1153)
T PLN03210 834 GCSRLRTFPD 843 (1153)
T ss_pred CCCccccccc
Confidence 7777766654
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.81 E-value=7.2e-09 Score=119.71 Aligned_cols=183 Identities=15% Similarity=0.133 Sum_probs=92.1
Q ss_pred hhhhcCCccCceeeEEeccchhHHHhhcCCcccccccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeee
Q 009534 287 VEELLGLKHLNVLTITLHSFAALQRLLTYPSLQSIVSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEI 366 (532)
Q Consensus 287 ~~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~ 366 (532)
...+..+++|+.|+++ ++.....++.. ...+++|++|++++|.-...+|.. +.++++|+.|+++++.....+|.
T Consensus 157 p~~~~~l~~L~~L~L~--~n~l~~~~p~~---~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~ 230 (968)
T PLN00113 157 PNDIGSFSSLKVLDLG--GNVLVGKIPNS---LTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNLSGEIPY 230 (968)
T ss_pred ChHHhcCCCCCEEECc--cCcccccCChh---hhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCccCCcCCh
Confidence 3445566666666633 22211122211 122344666666655433334432 55555666665555432222222
Q ss_pred cccC-------------CccccccccCCCCCccEEEEeCCcccc-CC-chhcCCCcceeeeccccccccccccccccCcC
Q 009534 367 DYAG-------------GEVKRIRETHGFFSLHKVSIWGSKLRH-VT-WLILAPNLKLIQMYDCRCLEEIISLEKLGEVP 431 (532)
Q Consensus 367 ~~~~-------------~~~~~~~~~~~l~~L~~L~l~~c~L~~-l~-~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~ 431 (532)
.... ..+..+.....+++|++|++++|++.. +| ++..+++|+.|++++|.-...++.
T Consensus 231 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-------- 302 (968)
T PLN00113 231 EIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE-------- 302 (968)
T ss_pred hHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCCh--------
Confidence 1111 000011112235555555555553332 33 244555556666555543223332
Q ss_pred cccCcccccccccceeeccccccccccCCCCcCCCCccEEeecCCCCCCCCCCCCCC
Q 009534 432 SEEMQNLIPFARLERLSLGGLENLRSIYPRALPFPHLKELHVTLCPKLKKLPFDCTS 488 (532)
Q Consensus 432 ~~~~~~~~~~~~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~ 488 (532)
.+..+++|+.|++.++.-...+|.....+++|+.|++.+|.-...+|.....
T Consensus 303 -----~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 354 (968)
T PLN00113 303 -----LVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK 354 (968)
T ss_pred -----hHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhC
Confidence 5666778888888776655556666677888888888888766677754433
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.77 E-value=9.7e-09 Score=118.65 Aligned_cols=177 Identities=14% Similarity=0.100 Sum_probs=92.9
Q ss_pred CCccCceeeEEeccchhHHHhhcCCcccccccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCC
Q 009534 292 GLKHLNVLTITLHSFAALQRLLTYPSLQSIVSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGG 371 (532)
Q Consensus 292 ~L~~L~~L~i~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~ 371 (532)
.+++|+.|+++ .+.....++. ....+++|++|+++++.-...+|.. +.++++|++|++++|.....+|....
T Consensus 138 ~l~~L~~L~Ls--~n~~~~~~p~---~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~l~-- 209 (968)
T PLN00113 138 SIPNLETLDLS--NNMLSGEIPN---DIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQLVGQIPRELG-- 209 (968)
T ss_pred ccCCCCEEECc--CCcccccCCh---HHhcCCCCCEEECccCcccccCChh-hhhCcCCCeeeccCCCCcCcCChHHc--
Confidence 46778888844 3322112222 2223567999999887654566654 78888999999888754433343222
Q ss_pred ccccccccCCCCCccEEEEeCCcccc-CCc-hhcCCCcceeeeccccccccccccccc-----------cCcCcccCccc
Q 009534 372 EVKRIRETHGFFSLHKVSIWGSKLRH-VTW-LILAPNLKLIQMYDCRCLEEIISLEKL-----------GEVPSEEMQNL 438 (532)
Q Consensus 372 ~~~~~~~~~~l~~L~~L~l~~c~L~~-l~~-l~~l~~L~~L~l~~c~~l~~i~~~~~~-----------~~~~~~~~~~~ 438 (532)
.+++|++|++++|++.. +|. ++.+++|++|++++|.-...++..-.. .......+..+
T Consensus 210 ---------~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l 280 (968)
T PLN00113 210 ---------QMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI 280 (968)
T ss_pred ---------CcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhH
Confidence 35555555555553332 332 445555555555544322222210000 00000001245
Q ss_pred ccccccceeeccccccccccCCCCcCCCCccEEeecCCCCCCCCCCC
Q 009534 439 IPFARLERLSLGGLENLRSIYPRALPFPHLKELHVTLCPKLKKLPFD 485 (532)
Q Consensus 439 ~~~~~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~ 485 (532)
..+++|+.|++++|.-...+|.....+++|+.|++.+|.-...+|..
T Consensus 281 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~ 327 (968)
T PLN00113 281 FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA 327 (968)
T ss_pred hhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChh
Confidence 55667777777666444445555566677777777776655555543
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.58 E-value=2.5e-09 Score=109.20 Aligned_cols=61 Identities=15% Similarity=0.100 Sum_probs=36.5
Q ss_pred ccccccccceeeccccccccccCCCCcCCCCccEEeecCCCCCCCCCCCCCCCCCceeEEecch
Q 009534 437 NLIPFARLERLSLGGLENLRSIYPRALPFPHLKELHVTLCPKLKKLPFDCTSGHERKLIIKGQE 500 (532)
Q Consensus 437 ~~~~~~~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~l~~L~~~~~~~ 500 (532)
.++.+.+|+.+...+ .+|+-.|.+++.|+.|++|.+ +|..|-.+|..+.-. +.|+..+..+
T Consensus 311 GIGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L-~~NrLiTLPeaIHlL-~~l~vLDlre 371 (1255)
T KOG0444|consen 311 GIGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKL-DHNRLITLPEAIHLL-PDLKVLDLRE 371 (1255)
T ss_pred chhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhcc-cccceeechhhhhhc-CCcceeeccC
Confidence 455555555555544 345555666666777777776 367777788765433 6666655443
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.52 E-value=2e-08 Score=102.81 Aligned_cols=169 Identities=17% Similarity=0.183 Sum_probs=112.8
Q ss_pred hcCCcccccccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeC
Q 009534 313 LTYPSLQSIVSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWG 392 (532)
Q Consensus 313 ~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 392 (532)
...+.....|.||+.++++. +++..+|.- +-.+++|+.|++++. .++.+...... -.+|++|+++.
T Consensus 212 ~N~Ptsld~l~NL~dvDlS~-N~Lp~vPec-ly~l~~LrrLNLS~N-~iteL~~~~~~-----------W~~lEtLNlSr 277 (1255)
T KOG0444|consen 212 DNIPTSLDDLHNLRDVDLSE-NNLPIVPEC-LYKLRNLRRLNLSGN-KITELNMTEGE-----------WENLETLNLSR 277 (1255)
T ss_pred hcCCCchhhhhhhhhccccc-cCCCcchHH-HhhhhhhheeccCcC-ceeeeeccHHH-----------Hhhhhhhcccc
Confidence 33344444567788888875 557777765 667788888888873 56655442221 34555555555
Q ss_pred CccccCCc-hhcCCCcceeeeccc------------------------cccccccccccccCcCcccCccccccccccee
Q 009534 393 SKLRHVTW-LILAPNLKLIQMYDC------------------------RCLEEIISLEKLGEVPSEEMQNLIPFARLERL 447 (532)
Q Consensus 393 c~L~~l~~-l~~l~~L~~L~l~~c------------------------~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L 447 (532)
|.|+.+|. +.+++.|+.|++.+. ++++-+| +.+..+++|+.|
T Consensus 278 NQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVP-------------EglcRC~kL~kL 344 (1255)
T KOG0444|consen 278 NQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVP-------------EGLCRCVKLQKL 344 (1255)
T ss_pred chhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCc-------------hhhhhhHHHHHh
Confidence 55555554 444555555544321 2233333 488899999999
Q ss_pred eccccccccccCCCCcCCCCccEEeecCCCCCCCCCCCCCCCCCceeEEecchhhhhhcccCc
Q 009534 448 SLGGLENLRSIYPRALPFPHLKELHVTLCPKLKKLPFDCTSGHERKLIIKGQEEWWNNLQWDD 510 (532)
Q Consensus 448 ~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~l~~L~~~~~~~~w~~~l~w~~ 510 (532)
.|.. ..|..+|..+.-+|.|+.|++++.|+|-.-|.-.... +.|...+......+.+.--+
T Consensus 345 ~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~-~~lefYNIDFSLq~QlrlAG 405 (1255)
T KOG0444|consen 345 KLDH-NRLITLPEAIHLLPDLKVLDLRENPNLVMPPKPNDAR-KKLEFYNIDFSLQHQLRLAG 405 (1255)
T ss_pred cccc-cceeechhhhhhcCCcceeeccCCcCccCCCCcchhh-hcceeeecceehhhHHhhcc
Confidence 9975 5677899988899999999999999998877644333 67777777777766665444
No 9
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.51 E-value=2.1e-09 Score=92.89 Aligned_cols=135 Identities=21% Similarity=0.294 Sum_probs=79.3
Q ss_pred ccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCcccc--CC
Q 009534 322 VSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRH--VT 399 (532)
Q Consensus 322 l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~--l~ 399 (532)
+.||+.|++.+ ++++.+|.+ +++++.|+.|+++- ..+..+|-++. +||-|+.|++..++|.+ +|
T Consensus 55 l~nlevln~~n-nqie~lp~~-issl~klr~lnvgm-nrl~~lprgfg-----------s~p~levldltynnl~e~~lp 120 (264)
T KOG0617|consen 55 LKNLEVLNLSN-NQIEELPTS-ISSLPKLRILNVGM-NRLNILPRGFG-----------SFPALEVLDLTYNNLNENSLP 120 (264)
T ss_pred hhhhhhhhccc-chhhhcChh-hhhchhhhheecch-hhhhcCccccC-----------CCchhhhhhccccccccccCC
Confidence 34455555555 345555554 55555555555542 23433343332 36666666666554443 33
Q ss_pred c-hhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccccCCCCcCCCCccEEeecCCCC
Q 009534 400 W-LILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIYPRALPFPHLKELHVTLCPK 478 (532)
Q Consensus 400 ~-l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~ 478 (532)
- +..+..|+-|++.+. ..+.+|. .++.+++|+.|.+.+. .|-++|.+++.+..|+.|+|.+ .+
T Consensus 121 gnff~m~tlralyl~dn-dfe~lp~-------------dvg~lt~lqil~lrdn-dll~lpkeig~lt~lrelhiqg-nr 184 (264)
T KOG0617|consen 121 GNFFYMTTLRALYLGDN-DFEILPP-------------DVGKLTNLQILSLRDN-DLLSLPKEIGDLTRLRELHIQG-NR 184 (264)
T ss_pred cchhHHHHHHHHHhcCC-CcccCCh-------------hhhhhcceeEEeeccC-chhhCcHHHHHHHHHHHHhccc-ce
Confidence 2 223444555555442 3455555 6777888888888774 5667888888888888888887 46
Q ss_pred CCCCCCCC
Q 009534 479 LKKLPFDC 486 (532)
Q Consensus 479 L~~lp~~~ 486 (532)
|..+|-..
T Consensus 185 l~vlppel 192 (264)
T KOG0617|consen 185 LTVLPPEL 192 (264)
T ss_pred eeecChhh
Confidence 77776543
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.49 E-value=1.2e-07 Score=96.57 Aligned_cols=119 Identities=18% Similarity=0.264 Sum_probs=72.0
Q ss_pred ccCCcc--cchhhhcCCccCceeeEEeccchhHHHhhcCCcccccccCCCeEEEecCCCCCccccccccccccccceeec
Q 009534 279 LSGGSL--VLVEELLGLKHLNVLTITLHSFAALQRLLTYPSLQSIVSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMR 356 (532)
Q Consensus 279 LS~g~L--v~~~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~ 356 (532)
||+..| +.++++.+|++|+.+++.-. .+..+|......++ |+.|+|.+ +.+.++....+..++.|+.|+++
T Consensus 85 lsnNkl~~id~~~f~nl~nLq~v~l~~N---~Lt~IP~f~~~sgh---l~~L~L~~-N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 85 LSNNKLSHIDFEFFYNLPNLQEVNLNKN---ELTRIPRFGHESGH---LEKLDLRH-NLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred ccccccccCcHHHHhcCCcceeeeeccc---hhhhcccccccccc---eeEEeeec-cccccccHHHHHhHhhhhhhhhh
Confidence 566666 68888999999999986522 34445544444444 55555555 22444443334444444444444
Q ss_pred cc-----------------------cCcceeeecccCCccccccccCCCCCccEEEEeCCccccCCc--hhcCCCcceee
Q 009534 357 YC-----------------------KDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTW--LILAPNLKLIQ 411 (532)
Q Consensus 357 ~c-----------------------~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~--l~~l~~L~~L~ 411 (532)
.- ..+..+..+. ..+|.+|..|.+++|.++.+|. +..||+|+.|+
T Consensus 158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~----------F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~Ld 227 (873)
T KOG4194|consen 158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGH----------FDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLD 227 (873)
T ss_pred hchhhcccCCCCCCCCCceEEeecccccccccccc----------ccccchheeeecccCcccccCHHHhhhcchhhhhh
Confidence 31 2333333322 2357788888888888888875 56688888888
Q ss_pred ecc
Q 009534 412 MYD 414 (532)
Q Consensus 412 l~~ 414 (532)
+..
T Consensus 228 Lnr 230 (873)
T KOG4194|consen 228 LNR 230 (873)
T ss_pred ccc
Confidence 854
No 11
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.39 E-value=1.1e-06 Score=88.33 Aligned_cols=32 Identities=22% Similarity=0.323 Sum_probs=17.4
Q ss_pred cccceeeccccccccccCCCCcCCCCccEEeecCC
Q 009534 442 ARLERLSLGGLENLRSIYPRALPFPHLKELHVTLC 476 (532)
Q Consensus 442 ~~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C 476 (532)
++|++|.+.+|..+. +|..+. ++|+.|.+..+
T Consensus 156 sSLk~L~Is~c~~i~-LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNII-LPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCccc-Cccccc--ccCcEEEeccc
Confidence 467777777666442 332211 46677776553
No 12
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.34 E-value=6e-08 Score=84.05 Aligned_cols=137 Identities=20% Similarity=0.299 Sum_probs=109.5
Q ss_pred ccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCCc-
Q 009534 322 VSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTW- 400 (532)
Q Consensus 322 l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~- 400 (532)
++++..|.+++ +.+..+|.. +..+.+|+.|++++ ..++++|.... +++.|+.|++.-++|..+|.
T Consensus 32 ~s~ITrLtLSH-NKl~~vppn-ia~l~nlevln~~n-nqie~lp~~is-----------sl~klr~lnvgmnrl~~lprg 97 (264)
T KOG0617|consen 32 MSNITRLTLSH-NKLTVVPPN-IAELKNLEVLNLSN-NQIEELPTSIS-----------SLPKLRILNVGMNRLNILPRG 97 (264)
T ss_pred hhhhhhhhccc-CceeecCCc-HHHhhhhhhhhccc-chhhhcChhhh-----------hchhhhheecchhhhhcCccc
Confidence 46688899988 458888865 88999999999988 47888887654 49999999998778888887
Q ss_pred hhcCCCcceeeeccccccc-cccccccccCcCcccCcccccccccceeeccccccccccCCCCcCCCCccEEeecCCCCC
Q 009534 401 LILAPNLKLIQMYDCRCLE-EIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIYPRALPFPHLKELHVTLCPKL 479 (532)
Q Consensus 401 l~~l~~L~~L~l~~c~~l~-~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L 479 (532)
++.+|-|+.|++++.+--+ .+|. .+..++.|+.|.+.+ ..++.+|..++.+..|+.|.+++. .|
T Consensus 98 fgs~p~levldltynnl~e~~lpg-------------nff~m~tlralyl~d-ndfe~lp~dvg~lt~lqil~lrdn-dl 162 (264)
T KOG0617|consen 98 FGSFPALEVLDLTYNNLNENSLPG-------------NFFYMTTLRALYLGD-NDFEILPPDVGKLTNLQILSLRDN-DL 162 (264)
T ss_pred cCCCchhhhhhccccccccccCCc-------------chhHHHHHHHHHhcC-CCcccCChhhhhhcceeEEeeccC-ch
Confidence 8999999999998654322 2333 677788999999988 467889999999999999999884 55
Q ss_pred CCCCCCCC
Q 009534 480 KKLPFDCT 487 (532)
Q Consensus 480 ~~lp~~~~ 487 (532)
-++|....
T Consensus 163 l~lpkeig 170 (264)
T KOG0617|consen 163 LSLPKEIG 170 (264)
T ss_pred hhCcHHHH
Confidence 67776443
No 13
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.25 E-value=3.1e-06 Score=85.27 Aligned_cols=68 Identities=16% Similarity=0.378 Sum_probs=39.1
Q ss_pred cCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCC-ccccCCch
Q 009534 323 SNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGS-KLRHVTWL 401 (532)
Q Consensus 323 ~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c-~L~~l~~l 401 (532)
.+++.|++++| .++.+|. ++ ++|+.|.+++|.+++.+|... .++|++|++++| ++..+|
T Consensus 52 ~~l~~L~Is~c-~L~sLP~--LP--~sLtsL~Lsnc~nLtsLP~~L-------------P~nLe~L~Ls~Cs~L~sLP-- 111 (426)
T PRK15386 52 RASGRLYIKDC-DIESLPV--LP--NELTEITIENCNNLTTLPGSI-------------PEGLEKLTVCHCPEISGLP-- 111 (426)
T ss_pred cCCCEEEeCCC-CCcccCC--CC--CCCcEEEccCCCCcccCCchh-------------hhhhhheEccCcccccccc--
Confidence 44666666666 4666652 33 256666776666666554311 246667777766 665554
Q ss_pred hcCCCcceeeec
Q 009534 402 ILAPNLKLIQMY 413 (532)
Q Consensus 402 ~~l~~L~~L~l~ 413 (532)
++|+.|.+.
T Consensus 112 ---~sLe~L~L~ 120 (426)
T PRK15386 112 ---ESVRSLEIK 120 (426)
T ss_pred ---cccceEEeC
Confidence 345555553
No 14
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.23 E-value=1.4e-05 Score=82.65 Aligned_cols=109 Identities=19% Similarity=0.160 Sum_probs=76.7
Q ss_pred CCcccccHHHHHHHHHHhcc----CCceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCHHHHHHHHH
Q 009534 146 PPTVVGLQSTLDRVWRCLTE----EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQLGKIQESIA 221 (532)
Q Consensus 146 ~~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~ 221 (532)
++.++||+++++++...+.+ .....+-|+|+.|+|||++++.++++. ......-..+++......+...++..|+
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l-~~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEEL-EEIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH-HHhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 36789999999999998743 345567899999999999999999987 3222223455666666667888999999
Q ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHhcCC-cEEEe
Q 009534 222 KKIGLCNESWDSKSFDEKAQEIFKTMRNT-KFLIS 255 (532)
Q Consensus 222 ~~l~~~~~~~~~~~~~~~~~~l~~~L~~k-r~LlV 255 (532)
.++..........+..+....+.+.+..+ +.++|
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi 142 (394)
T PRK00411 108 RQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIV 142 (394)
T ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEE
Confidence 99875221113345667777777777543 33433
No 15
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.22 E-value=5.5e-07 Score=91.96 Aligned_cols=133 Identities=20% Similarity=0.252 Sum_probs=82.9
Q ss_pred ccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeee-cccCCccccccccCCCCCccEEEEeCCccccCCc
Q 009534 322 VSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEI-DYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTW 400 (532)
Q Consensus 322 l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~-~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~ 400 (532)
|.++++|+|.. +++..+....+-+++.|+.|++++- .++.+.. .|.. .++|+.|++++|.++.++.
T Consensus 268 l~kme~l~L~~-N~l~~vn~g~lfgLt~L~~L~lS~N-aI~rih~d~Wsf-----------tqkL~~LdLs~N~i~~l~~ 334 (873)
T KOG4194|consen 268 LEKMEHLNLET-NRLQAVNEGWLFGLTSLEQLDLSYN-AIQRIHIDSWSF-----------TQKLKELDLSSNRITRLDE 334 (873)
T ss_pred ecccceeeccc-chhhhhhcccccccchhhhhccchh-hhheeecchhhh-----------cccceeEeccccccccCCh
Confidence 56677777776 4466666666677788888887763 4554533 3432 5666666666666666543
Q ss_pred --hhcCCCcceeeeccc-----------------------cccccccccccccCcCcccCcccccccccceeeccccccc
Q 009534 401 --LILAPNLKLIQMYDC-----------------------RCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENL 455 (532)
Q Consensus 401 --l~~l~~L~~L~l~~c-----------------------~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L 455 (532)
+..|.+|++|.++.. +.+.-.++. ....+.++++|+.|.+.+ .++
T Consensus 335 ~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED---------aa~~f~gl~~LrkL~l~g-Nql 404 (873)
T KOG4194|consen 335 GSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED---------AAVAFNGLPSLRKLRLTG-NQL 404 (873)
T ss_pred hHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec---------chhhhccchhhhheeecC-cee
Confidence 334444444444321 112111110 112566799999999998 589
Q ss_pred cccCCCC-cCCCCccEEeecCCC
Q 009534 456 RSIYPRA-LPFPHLKELHVTLCP 477 (532)
Q Consensus 456 ~~i~~~~-~~~p~L~~L~i~~C~ 477 (532)
++|+... ..++.|+.|++.+.+
T Consensus 405 k~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 405 KSIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred eecchhhhccCcccceecCCCCc
Confidence 9999844 468999999998855
No 16
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=6.4e-08 Score=90.95 Aligned_cols=133 Identities=24% Similarity=0.300 Sum_probs=97.7
Q ss_pred cCCCeEEEecCCCCCcccccc-ccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCC--cccc--
Q 009534 323 SNTPSLSLTNCRSLSSLSVLT-LASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGS--KLRH-- 397 (532)
Q Consensus 323 ~~L~~L~l~~c~~l~~l~~~~-l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c--~L~~-- 397 (532)
.+|+.|+|+.|.+++...... +.+++.|..|+++.|.--.....-... .-=++|+.|+|+|| ++..
T Consensus 234 ~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~---------hise~l~~LNlsG~rrnl~~sh 304 (419)
T KOG2120|consen 234 SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVA---------HISETLTQLNLSGYRRNLQKSH 304 (419)
T ss_pred ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHh---------hhchhhhhhhhhhhHhhhhhhH
Confidence 459999999999998876554 478899999999988544322100000 01258999999999 4433
Q ss_pred CCc-hhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccccCC---CCcCCCCccEEee
Q 009534 398 VTW-LILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIYP---RALPFPHLKELHV 473 (532)
Q Consensus 398 l~~-l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~---~~~~~p~L~~L~i 473 (532)
+.. ...+|+|..|++++|..+..-.. +.+..|+.|++|.++.|..+ +|. ...+.|+|.+|++
T Consensus 305 ~~tL~~rcp~l~~LDLSD~v~l~~~~~------------~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv 370 (419)
T KOG2120|consen 305 LSTLVRRCPNLVHLDLSDSVMLKNDCF------------QEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDV 370 (419)
T ss_pred HHHHHHhCCceeeeccccccccCchHH------------HHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEe
Confidence 333 45799999999999988765333 36777999999999999865 232 5678999999999
Q ss_pred cCCCC
Q 009534 474 TLCPK 478 (532)
Q Consensus 474 ~~C~~ 478 (532)
.+|-.
T Consensus 371 ~g~vs 375 (419)
T KOG2120|consen 371 FGCVS 375 (419)
T ss_pred ccccC
Confidence 99753
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.12 E-value=2.8e-06 Score=93.40 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=12.1
Q ss_pred CCCHHHHHHHHHHHhcCCcE
Q 009534 233 SKSFDEKAQEIFKTMRNTKF 252 (532)
Q Consensus 233 ~~~~~~~~~~l~~~L~~kr~ 252 (532)
..+.+.....++.++.++..
T Consensus 162 ~~~r~~a~~r~~~Cl~~~~~ 181 (754)
T PRK15370 162 AANREEAVQRMRDCLKNNKT 181 (754)
T ss_pred cccHHHHHHHHHhhcccCce
Confidence 44555666667777765443
No 18
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.11 E-value=2.5e-05 Score=79.88 Aligned_cols=101 Identities=14% Similarity=0.152 Sum_probs=70.1
Q ss_pred CcccccHHHHHHHHHHhcc----CCceEEEEecCCCCcHHHHHHHHHHhccCCCCCC---CeEEEEEeCCCCCHHHHHHH
Q 009534 147 PTVVGLQSTLDRVWRCLTE----EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNF---DFVIWEVVSRDLQLGKIQES 219 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F---~~~~wv~v~~~~~~~~l~~~ 219 (532)
+.++||++++++|..++.+ .....+-|+|++|+|||++++.++++..+..... -..+|+......+...++..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 5789999999999999864 3456789999999999999999998762101111 13466766666677889999
Q ss_pred HHHHhc---CCCCCCCCCCHHHHHHHHHHHhc
Q 009534 220 IAKKIG---LCNESWDSKSFDEKAQEIFKTMR 248 (532)
Q Consensus 220 i~~~l~---~~~~~~~~~~~~~~~~~l~~~L~ 248 (532)
|+.++. .... ....+..+....+.+.+.
T Consensus 95 i~~~l~~~~~~~~-~~~~~~~~~~~~l~~~l~ 125 (365)
T TIGR02928 95 LANQLRGSGEEVP-TTGLSTSEVFRRLYKELN 125 (365)
T ss_pred HHHHHhhcCCCCC-CCCCCHHHHHHHHHHHHH
Confidence 999884 2211 122344555566666663
No 19
>PTZ00202 tuzin; Provisional
Probab=98.10 E-value=6.3e-05 Score=75.72 Aligned_cols=73 Identities=21% Similarity=0.156 Sum_probs=57.8
Q ss_pred CCcccccHHHHHHHHHHhccC---CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 009534 146 PPTVVGLQSTLDRVWRCLTEE---PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQLGKIQESIAK 222 (532)
Q Consensus 146 ~~~~vGr~~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~ 222 (532)
.+.|+||+.+...+...|.+. ..+++.|.|+.|+|||||++.+.... . ...++.-.. +..++++.|+.
T Consensus 261 ~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l----~---~~qL~vNpr--g~eElLr~LL~ 331 (550)
T PTZ00202 261 IRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE----G---MPAVFVDVR--GTEDTLRSVVK 331 (550)
T ss_pred ccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC----C---ceEEEECCC--CHHHHHHHHHH
Confidence 468999999999999988642 35689999999999999999999766 2 113332222 77999999999
Q ss_pred HhcCC
Q 009534 223 KIGLC 227 (532)
Q Consensus 223 ~l~~~ 227 (532)
+++.+
T Consensus 332 ALGV~ 336 (550)
T PTZ00202 332 ALGVP 336 (550)
T ss_pred HcCCC
Confidence 99974
No 20
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.07 E-value=1.4e-06 Score=78.23 Aligned_cols=122 Identities=21% Similarity=0.295 Sum_probs=34.0
Q ss_pred CCeEEEecCCCCCcccccccc-ccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCCc-h-
Q 009534 325 TPSLSLTNCRSLSSLSVLTLA-SLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTW-L- 401 (532)
Q Consensus 325 L~~L~l~~c~~l~~l~~~~l~-~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~-l- 401 (532)
+++|+|+++. +..+.. +. .+.+|+.|+++++ .++.++. ...+++|+.|++++|.++.+.. +
T Consensus 21 ~~~L~L~~n~-I~~Ie~--L~~~l~~L~~L~Ls~N-~I~~l~~------------l~~L~~L~~L~L~~N~I~~i~~~l~ 84 (175)
T PF14580_consen 21 LRELNLRGNQ-ISTIEN--LGATLDKLEVLDLSNN-QITKLEG------------LPGLPRLKTLDLSNNRISSISEGLD 84 (175)
T ss_dssp ----------------S----TT-TT--EEE-TTS---S--TT----------------TT--EEE--SS---S-CHHHH
T ss_pred cccccccccc-cccccc--hhhhhcCCCEEECCCC-CCccccC------------ccChhhhhhcccCCCCCCccccchH
Confidence 5566666533 443321 32 3456666666654 3443321 1235666666666666666542 2
Q ss_pred hcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccccCC----CCcCCCCccEEeecC
Q 009534 402 ILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIYP----RALPFPHLKELHVTL 475 (532)
Q Consensus 402 ~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~----~~~~~p~L~~L~i~~ 475 (532)
..+|+|++|++++ +++.++.. -..+..+|+|+.|++.+.|-- .-+. -+..+|+|+.|+-..
T Consensus 85 ~~lp~L~~L~L~~-N~I~~l~~-----------l~~L~~l~~L~~L~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 85 KNLPNLQELYLSN-NKISDLNE-----------LEPLSSLPKLRVLSLEGNPVC-EKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp HH-TT--EEE-TT-S---SCCC-----------CGGGGG-TT--EEE-TT-GGG-GSTTHHHHHHHH-TT-SEETTEE
T ss_pred HhCCcCCEEECcC-CcCCChHH-----------hHHHHcCCCcceeeccCCccc-chhhHHHHHHHHcChhheeCCEE
Confidence 2466666666653 22333322 124455666666666665532 2222 134466666665443
No 21
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.01 E-value=2.5e-05 Score=74.54 Aligned_cols=56 Identities=20% Similarity=0.208 Sum_probs=47.7
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCC--CCHHHHHHHHHHHh
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRD--LQLGKIQESIAKKI 224 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~--~~~~~l~~~i~~~l 224 (532)
.-..++|+|++|+|||||++.+|+.. .. .+|+.++|+.+.+. +++.++++.+...+
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l-~~-~~fdv~~~v~vI~er~~ev~el~~~I~~~~ 72 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAI-TK-NHPEVYLIVLLIDERPEEVTDMQRSVKGEV 72 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc-cc-ccCCeEEEEEEccCCCccHHHHHHHhccEE
Confidence 45789999999999999999999998 44 38999999997766 79999999984443
No 22
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.98 E-value=2e-05 Score=78.72 Aligned_cols=63 Identities=19% Similarity=0.183 Sum_probs=50.4
Q ss_pred HHHHhcc-CCceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCC--CHHHHHHHHHHH
Q 009534 159 VWRCLTE-EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDL--QLGKIQESIAKK 223 (532)
Q Consensus 159 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~--~~~~l~~~i~~~ 223 (532)
+++++.. +.-....|+|++|+||||||+.||+.. .. ++|+.++||.+.+.. .+.++++.|...
T Consensus 159 vID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I-~~-nhFDv~~~VvLIgER~~EVtdiqrsIlg~ 224 (416)
T PRK09376 159 IIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSI-TT-NHPEVHLIVLLIDERPEEVTDMQRSVKGE 224 (416)
T ss_pred eeeeecccccCceEEEeCCCCCChhHHHHHHHHHH-Hh-hcCCeEEEEEEeCCchhHHHHHHHHhcCc
Confidence 3444432 245678899999999999999999998 43 489999999998877 888999988743
No 23
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.97 E-value=1.2e-05 Score=58.94 Aligned_cols=60 Identities=23% Similarity=0.324 Sum_probs=40.1
Q ss_pred cCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCc
Q 009534 323 SNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSK 394 (532)
Q Consensus 323 ~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 394 (532)
++|++|++++| .++.+|...+..+++|+.|+|+++ .++.++.+... .+++|++|++++|+
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~----------~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFS----------NLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSS-SESEEETTTTT----------TSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHc----------CCCCCCEEeCcCCc
Confidence 35777777775 577777666677777777777754 56666665544 57777777777663
No 24
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.92 E-value=2.6e-07 Score=90.31 Aligned_cols=136 Identities=19% Similarity=0.245 Sum_probs=89.4
Q ss_pred CCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCCchhcC
Q 009534 325 TPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTWLILA 404 (532)
Q Consensus 325 L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~l~~l 404 (532)
|..|.+.+ +.++.+|...+ +|+.|+.|+..+ .-++.+|.+.. ++.+|..|++..+++..+|.+..+
T Consensus 162 l~~l~~~~-n~l~~l~~~~i-~m~~L~~ld~~~-N~L~tlP~~lg-----------~l~~L~~LyL~~Nki~~lPef~gc 227 (565)
T KOG0472|consen 162 LSKLDLEG-NKLKALPENHI-AMKRLKHLDCNS-NLLETLPPELG-----------GLESLELLYLRRNKIRFLPEFPGC 227 (565)
T ss_pred HHHhhccc-cchhhCCHHHH-HHHHHHhcccch-hhhhcCChhhc-----------chhhhHHHHhhhcccccCCCCCcc
Confidence 45555555 33555555423 366666666544 24555655443 377777777777777777777777
Q ss_pred CCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccccCCCCcCCCCccEEeecCCCCCCCCCC
Q 009534 405 PNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIYPRALPFPHLKELHVTLCPKLKKLPF 484 (532)
Q Consensus 405 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~ 484 (532)
..|.+|++. -+.++.++. +...++++|..|++.+ .++++.|.+++.+.+|+.|++++ ..+..+|.
T Consensus 228 s~L~Elh~g-~N~i~~lpa------------e~~~~L~~l~vLDLRd-Nklke~Pde~clLrsL~rLDlSN-N~is~Lp~ 292 (565)
T KOG0472|consen 228 SLLKELHVG-ENQIEMLPA------------EHLKHLNSLLVLDLRD-NKLKEVPDEICLLRSLERLDLSN-NDISSLPY 292 (565)
T ss_pred HHHHHHHhc-ccHHHhhHH------------HHhcccccceeeeccc-cccccCchHHHHhhhhhhhcccC-CccccCCc
Confidence 777777774 345666655 2344678888888877 46788888777788888888877 46777777
Q ss_pred CCCCC
Q 009534 485 DCTSG 489 (532)
Q Consensus 485 ~~~~~ 489 (532)
...+.
T Consensus 293 sLgnl 297 (565)
T KOG0472|consen 293 SLGNL 297 (565)
T ss_pred ccccc
Confidence 66655
No 25
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.91 E-value=1.4e-06 Score=93.62 Aligned_cols=89 Identities=19% Similarity=0.252 Sum_probs=68.0
Q ss_pred cccCCCCCccEEEEeCCccccCCc--hhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeecccccc
Q 009534 377 RETHGFFSLHKVSIWGSKLRHVTW--LILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLEN 454 (532)
Q Consensus 377 ~~~~~l~~L~~L~l~~c~L~~l~~--l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 454 (532)
+-+.+|.+|+.|++++|.|..+|. +.+++.|++|++++ ++++.++. ++..+++|++|..++ ..
T Consensus 377 p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSG-NkL~~Lp~-------------tva~~~~L~tL~ahs-N~ 441 (1081)
T KOG0618|consen 377 PVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSG-NKLTTLPD-------------TVANLGRLHTLRAHS-NQ 441 (1081)
T ss_pred hhhccccceeeeeecccccccCCHHHHhchHHhHHHhccc-chhhhhhH-------------HHHhhhhhHHHhhcC-Cc
Confidence 345578899999999999999986 78899999999987 45888876 677777888777765 35
Q ss_pred ccccCCCCcCCCCccEEeecCCCCCCCC
Q 009534 455 LRSIYPRALPFPHLKELHVTLCPKLKKL 482 (532)
Q Consensus 455 L~~i~~~~~~~p~L~~L~i~~C~~L~~l 482 (532)
+.++| +...+|+|+.++++ |.+|..+
T Consensus 442 l~~fP-e~~~l~qL~~lDlS-~N~L~~~ 467 (1081)
T KOG0618|consen 442 LLSFP-ELAQLPQLKVLDLS-CNNLSEV 467 (1081)
T ss_pred eeech-hhhhcCcceEEecc-cchhhhh
Confidence 66777 56677778877775 4566553
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.90 E-value=7.5e-06 Score=73.56 Aligned_cols=108 Identities=17% Similarity=0.256 Sum_probs=39.0
Q ss_pred ccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCCchhcCCCcceeeeccccccccccc
Q 009534 344 LASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTWLILAPNLKLIQMYDCRCLEEIIS 423 (532)
Q Consensus 344 l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~l~~l~~L~~L~l~~c~~l~~i~~ 423 (532)
+.+..+++.|++.++ .++.+. +... .+.+|+.|++++|.++.++-+..+++|++|++++ +.+.++..
T Consensus 15 ~~n~~~~~~L~L~~n-~I~~Ie-~L~~----------~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~-N~I~~i~~ 81 (175)
T PF14580_consen 15 YNNPVKLRELNLRGN-QISTIE-NLGA----------TLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSN-NRISSISE 81 (175)
T ss_dssp -----------------------S--T----------T-TT--EEE-TTS--S--TT----TT--EEE--S-S---S-CH
T ss_pred ccccccccccccccc-cccccc-chhh----------hhcCCCEEECCCCCCccccCccChhhhhhcccCC-CCCCcccc
Confidence 445567899999986 455442 2221 4789999999999999998888999999999975 45777743
Q ss_pred cccccCcCcccCccc-ccccccceeeccccccccccCC--CCcCCCCccEEeecCCCC
Q 009534 424 LEKLGEVPSEEMQNL-IPFARLERLSLGGLENLRSIYP--RALPFPHLKELHVTLCPK 478 (532)
Q Consensus 424 ~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~L~~i~~--~~~~~p~L~~L~i~~C~~ 478 (532)
.+ ..+|+|+.|++.+. ++.++.. ....+|+|+.|++.+.|-
T Consensus 82 -------------~l~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 82 -------------GLDKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp -------------HHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred -------------chHHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCcc
Confidence 33 35899999999873 4555533 345799999999998764
No 27
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.90 E-value=2.1e-05 Score=86.71 Aligned_cols=133 Identities=17% Similarity=0.186 Sum_probs=97.3
Q ss_pred CCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCCchhc
Q 009534 324 NTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTWLIL 403 (532)
Q Consensus 324 ~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~l~~ 403 (532)
+|+.|+++++ .++.+|.. +. ++|+.|+++++ .++.+|... .++|+.|++++|.+..+|. ..
T Consensus 200 ~L~~L~Ls~N-~LtsLP~~-l~--~nL~~L~Ls~N-~LtsLP~~l-------------~~~L~~L~Ls~N~L~~LP~-~l 260 (754)
T PRK15370 200 QITTLILDNN-ELKSLPEN-LQ--GNIKTLYANSN-QLTSIPATL-------------PDTIQEMELSINRITELPE-RL 260 (754)
T ss_pred CCcEEEecCC-CCCcCChh-hc--cCCCEEECCCC-ccccCChhh-------------hccccEEECcCCccCcCCh-hH
Confidence 4999999985 58888865 33 58999999986 577676522 3589999999998888874 23
Q ss_pred CCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccccCCCCcCCCCccEEeecCCCCCCCCC
Q 009534 404 APNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIYPRALPFPHLKELHVTLCPKLKKLP 483 (532)
Q Consensus 404 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp 483 (532)
..+|+.|+++ |+++..++. .+ +++|+.|+++++ +|+.+|.... ++|+.|++++| +|..+|
T Consensus 261 ~s~L~~L~Ls-~N~L~~LP~-------------~l--~~sL~~L~Ls~N-~Lt~LP~~lp--~sL~~L~Ls~N-~Lt~LP 320 (754)
T PRK15370 261 PSALQSLDLF-HNKISCLPE-------------NL--PEELRYLSVYDN-SIRTLPAHLP--SGITHLNVQSN-SLTALP 320 (754)
T ss_pred hCCCCEEECc-CCccCcccc-------------cc--CCCCcEEECCCC-ccccCcccch--hhHHHHHhcCC-ccccCC
Confidence 4689999996 566877765 44 368999999986 6888875432 57999999986 577777
Q ss_pred CCCCCCCCceeE
Q 009534 484 FDCTSGHERKLI 495 (532)
Q Consensus 484 ~~~~~~l~~L~~ 495 (532)
......++.|.+
T Consensus 321 ~~l~~sL~~L~L 332 (754)
T PRK15370 321 ETLPPGLKTLEA 332 (754)
T ss_pred ccccccceeccc
Confidence 644433344433
No 28
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.84 E-value=1.7e-05 Score=58.22 Aligned_cols=56 Identities=21% Similarity=0.329 Sum_probs=26.5
Q ss_pred cccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCCc--hhcCCCcceeeeccc
Q 009534 349 HLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTW--LILAPNLKLIQMYDC 415 (532)
Q Consensus 349 ~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~--l~~l~~L~~L~l~~c 415 (532)
+|+.|.+.+| .+..++.+... .+++|++|++++|.++.++. +..+++|++|++++|
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~----------~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFS----------NLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSS-TESEECTTTTT----------TGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCC-CCCccCHHHHc----------CCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 4455555554 44444443333 44555555555444444432 444555555555443
No 29
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.77 E-value=0.00049 Score=67.05 Aligned_cols=59 Identities=20% Similarity=0.303 Sum_probs=42.9
Q ss_pred CCceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC
Q 009534 166 EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQLGKIQESIAKKIGLCN 228 (532)
Q Consensus 166 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~ 228 (532)
....++.|+|+.|+||||+++.+++.. .. ..+ ..+|+ +....+..+++..|...++.+.
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l-~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~ 99 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRL-DQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLET 99 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhc-CC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCC
Confidence 346689999999999999999999987 32 111 22333 3334577889999999887753
No 30
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.75 E-value=0.00014 Score=73.17 Aligned_cols=58 Identities=16% Similarity=0.140 Sum_probs=48.7
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCC--CCHHHHHHHHHHHhcC
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRD--LQLGKIQESIAKKIGL 226 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~--~~~~~l~~~i~~~l~~ 226 (532)
.-..++|+|++|+|||||++.+++.. . .++|+..+||.+.+. .++.++++.+...+-.
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I-~-~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vva 226 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAI-T-RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVA 226 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhh-c-ccCCceEEEEEEcCCCCccHHHHHHHhhceEEE
Confidence 45678999999999999999999998 3 348999999998865 7999999999665433
No 31
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.75 E-value=1.5e-05 Score=89.27 Aligned_cols=82 Identities=32% Similarity=0.452 Sum_probs=68.8
Q ss_pred CCCceecccc-hhhHHHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhchHHHHHHHHHH
Q 009534 1 MGNVCSAQFS-CDGTISRCLDCIVSKAGYICHLKDNLYALRTDFQKLIEARNDVQIRVIVAEQRQ-MRRLQQVQGWLSRV 78 (532)
Q Consensus 1 m~~~~~~~~~-~~~v~~kl~~~~~~~~~~~~~~~~~~~~L~~~l~~l~~~l~~v~~~i~~ae~~~-~~~~~~~~~Wl~~l 78 (532)
|++.+++++- ++.+++.....+.....++..+++++..|+..++.+.+...+....+...|..+ ...+.++..|+.++
T Consensus 1 ~~~~~s~~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v 80 (889)
T KOG4658|consen 1 MGACVSFGVEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLV 80 (889)
T ss_pred CCeEEEEehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777665553 678999999999999999999999999999999999999999888888777776 55578889999888
Q ss_pred HHHH
Q 009534 79 QDVE 82 (532)
Q Consensus 79 r~~~ 82 (532)
+...
T Consensus 81 ~~~~ 84 (889)
T KOG4658|consen 81 EEIE 84 (889)
T ss_pred HHHH
Confidence 7554
No 32
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.71 E-value=4.8e-05 Score=69.47 Aligned_cols=44 Identities=27% Similarity=0.394 Sum_probs=32.7
Q ss_pred ccccHHHHHHHHHHhc---cCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 149 VVGLQSTLDRVWRCLT---EEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 149 ~vGr~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
|+||+++++++...+. ....+.+-|+|..|+|||++.+.++...
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 7999999999999993 3467999999999999999999999988
No 33
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.70 E-value=9e-05 Score=81.50 Aligned_cols=153 Identities=24% Similarity=0.249 Sum_probs=77.2
Q ss_pred cCceeeEEeccchhHHHhhcCCcccccccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccc
Q 009534 295 HLNVLTITLHSFAALQRLLTYPSLQSIVSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVK 374 (532)
Q Consensus 295 ~L~~L~i~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~ 374 (532)
+|+.|.+... .+..++.. +++|++|+++++ .++.+|. + .++|+.|++.++ .+..+|.
T Consensus 223 ~L~~L~L~~N---~Lt~LP~l------p~~Lk~LdLs~N-~LtsLP~--l--p~sL~~L~Ls~N-~L~~Lp~-------- 279 (788)
T PRK15387 223 HITTLVIPDN---NLTSLPAL------PPELRTLEVSGN-QLTSLPV--L--PPGLLELSIFSN-PLTHLPA-------- 279 (788)
T ss_pred CCCEEEccCC---cCCCCCCC------CCCCcEEEecCC-ccCcccC--c--ccccceeeccCC-chhhhhh--------
Confidence 6777774422 23333332 245888888885 5777764 2 257788888775 3554443
Q ss_pred cccccCCCCCccEEEEeCCccccCCchhcCCCcceeeeccccccccccccccccC---cCcccCcccccc-cccceeecc
Q 009534 375 RIRETHGFFSLHKVSIWGSKLRHVTWLILAPNLKLIQMYDCRCLEEIISLEKLGE---VPSEEMQNLIPF-ARLERLSLG 450 (532)
Q Consensus 375 ~~~~~~~l~~L~~L~l~~c~L~~l~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~---~~~~~~~~~~~~-~~L~~L~l~ 450 (532)
.+.+|+.|++++|+++.+|. .+++|+.|+++++ ++..++.....-. .....-..+..+ ++|+.|+++
T Consensus 280 ------lp~~L~~L~Ls~N~Lt~LP~--~p~~L~~LdLS~N-~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS 350 (788)
T PRK15387 280 ------LPSGLCKLWIFGNQLTSLPV--LPPGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVS 350 (788)
T ss_pred ------chhhcCEEECcCCccccccc--cccccceeECCCC-ccccCCCCcccccccccccCccccccccccccceEecC
Confidence 13455566666665555553 2455666666553 3444332100000 000000001112 367888887
Q ss_pred ccccccccCCCCcCCCCccEEeecCCCCCCCCCC
Q 009534 451 GLENLRSIYPRALPFPHLKELHVTLCPKLKKLPF 484 (532)
Q Consensus 451 ~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~ 484 (532)
++ +|+.+|.. .++|+.|+++++ +|..+|.
T Consensus 351 ~N-~Ls~LP~l---p~~L~~L~Ls~N-~L~~LP~ 379 (788)
T PRK15387 351 DN-QLASLPTL---PSELYKLWAYNN-RLTSLPA 379 (788)
T ss_pred CC-ccCCCCCC---Ccccceehhhcc-ccccCcc
Confidence 64 56666642 245666666553 4555554
No 34
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.65 E-value=0.00012 Score=62.72 Aligned_cols=83 Identities=19% Similarity=0.266 Sum_probs=59.6
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCC---CCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHH
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTP---NNFDFVIWEVVSRDLQLGKIQESIAKKIGLCNESWDSKSFDEKAQEI 243 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l 243 (532)
+-+++.|+|..|+|||++++.+..+.. .. ..-..++|+.+....+...+.+.|+..++.... ...+..+....+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~l~~~~ 79 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLN-AEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLK--SRQTSDELRSLL 79 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHH-HHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSS--STS-HHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhH-HhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcccc--ccCCHHHHHHHH
Confidence 356889999999999999999998862 00 003456799988777999999999999998652 235677778888
Q ss_pred HHHhcCCcE
Q 009534 244 FKTMRNTKF 252 (532)
Q Consensus 244 ~~~L~~kr~ 252 (532)
.+.+...+.
T Consensus 80 ~~~l~~~~~ 88 (131)
T PF13401_consen 80 IDALDRRRV 88 (131)
T ss_dssp HHHHHHCTE
T ss_pred HHHHHhcCC
Confidence 888877765
No 35
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.62 E-value=0.00016 Score=79.49 Aligned_cols=97 Identities=22% Similarity=0.263 Sum_probs=72.6
Q ss_pred CCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCCchhc
Q 009534 324 NTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTWLIL 403 (532)
Q Consensus 324 ~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~l~~ 403 (532)
+|+.|.+.+ +.++.+|.. +++|++|+++++ .++.+|. .+++|+.|++.+|.++.+|. .
T Consensus 223 ~L~~L~L~~-N~Lt~LP~l----p~~Lk~LdLs~N-~LtsLP~--------------lp~sL~~L~Ls~N~L~~Lp~--l 280 (788)
T PRK15387 223 HITTLVIPD-NNLTSLPAL----PPELRTLEVSGN-QLTSLPV--------------LPPGLLELSIFSNPLTHLPA--L 280 (788)
T ss_pred CCCEEEccC-CcCCCCCCC----CCCCcEEEecCC-ccCcccC--------------cccccceeeccCCchhhhhh--c
Confidence 499999998 458888752 478999999885 7776653 25789999999998888874 4
Q ss_pred CCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccccCC
Q 009534 404 APNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIYP 460 (532)
Q Consensus 404 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~ 460 (532)
+++|+.|+++++ +++.++. . +++|+.|+++++ ++..+|.
T Consensus 281 p~~L~~L~Ls~N-~Lt~LP~-------------~---p~~L~~LdLS~N-~L~~Lp~ 319 (788)
T PRK15387 281 PSGLCKLWIFGN-QLTSLPV-------------L---PPGLQELSVSDN-QLASLPA 319 (788)
T ss_pred hhhcCEEECcCC-ccccccc-------------c---ccccceeECCCC-ccccCCC
Confidence 578999999876 4666654 1 467888888875 5666654
No 36
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.60 E-value=1.3e-05 Score=80.07 Aligned_cols=14 Identities=36% Similarity=0.458 Sum_probs=7.6
Q ss_pred ccccccceeecccc
Q 009534 439 IPFARLERLSLGGL 452 (532)
Q Consensus 439 ~~~~~L~~L~l~~~ 452 (532)
..+++|++|++++|
T Consensus 218 ~~~~~L~~L~ls~n 231 (319)
T cd00116 218 ASLKSLEVLNLGDN 231 (319)
T ss_pred cccCCCCEEecCCC
Confidence 33455566665554
No 37
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.60 E-value=8.7e-06 Score=87.68 Aligned_cols=108 Identities=25% Similarity=0.358 Sum_probs=80.9
Q ss_pred ccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCCch
Q 009534 322 VSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTWL 401 (532)
Q Consensus 322 l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~l 401 (532)
+.+|+.|++++ +.+.++|.+.+.++..|+.|++++ ..|+.+|..... +..|++|...+|.+..+|-+
T Consensus 382 ~~hLKVLhLsy-NrL~~fpas~~~kle~LeeL~LSG-NkL~~Lp~tva~-----------~~~L~tL~ahsN~l~~fPe~ 448 (1081)
T KOG0618|consen 382 FKHLKVLHLSY-NRLNSFPASKLRKLEELEELNLSG-NKLTTLPDTVAN-----------LGRLHTLRAHSNQLLSFPEL 448 (1081)
T ss_pred ccceeeeeecc-cccccCCHHHHhchHHhHHHhccc-chhhhhhHHHHh-----------hhhhHHHhhcCCceeechhh
Confidence 66788888888 458888887778888888888887 478878765443 77888888877788888888
Q ss_pred hcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccc
Q 009534 402 ILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENL 455 (532)
Q Consensus 402 ~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L 455 (532)
..+++|+.++| .|+++.++... ....-|+|++|++++.+++
T Consensus 449 ~~l~qL~~lDl-S~N~L~~~~l~------------~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 449 AQLPQLKVLDL-SCNNLSEVTLP------------EALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred hhcCcceEEec-ccchhhhhhhh------------hhCCCcccceeeccCCccc
Confidence 88888888888 57778777541 1111278888888887653
No 38
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.57 E-value=0.00038 Score=71.21 Aligned_cols=69 Identities=16% Similarity=0.119 Sum_probs=57.6
Q ss_pred CcccccHHHHHHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCHHHHHH
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQLGKIQE 218 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~~~~l~~ 218 (532)
.++++.++..+.+...|.. .+-+.++|++|+|||++|+.+++.. .....|+.+.||++++.++..++..
T Consensus 175 ~d~~i~e~~le~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l-~~~~~~~~v~~VtFHpsySYeDFI~ 243 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI--KKNIILQGPPGVGKTFVARRLAYLL-TGEKAPQRVNMVQFHQSYSYEDFIQ 243 (459)
T ss_pred hcccCCHHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHh-cCCcccceeeEEeecccccHHHHhc
Confidence 3578889999999999875 3567779999999999999999988 4455788999999999888777664
No 39
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=2.8e-05 Score=77.21 Aligned_cols=85 Identities=16% Similarity=0.247 Sum_probs=50.1
Q ss_pred CCCCccEEEEeCCccccCC---chhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccc
Q 009534 381 GFFSLHKVSIWGSKLRHVT---WLILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRS 457 (532)
Q Consensus 381 ~l~~L~~L~l~~c~L~~l~---~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~ 457 (532)
.++.|+.|+|+++.+..++ -.+.+|.|+.|.++.|. +.++-.-+.+. ..-...||+|++|++... +.+.
T Consensus 244 i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s------~~kt~~f~kL~~L~i~~N-~I~~ 315 (505)
T KOG3207|consen 244 ILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPDVES------LDKTHTFPKLEYLNISEN-NIRD 315 (505)
T ss_pred hhhHHhhccccCCcccccccccccccccchhhhhccccC-cchhcCCCccc------hhhhcccccceeeecccC-cccc
Confidence 4677888888888555543 47778888888887664 44443211100 012355888888888764 3444
Q ss_pred cCC--CCcCCCCccEEee
Q 009534 458 IYP--RALPFPHLKELHV 473 (532)
Q Consensus 458 i~~--~~~~~p~L~~L~i 473 (532)
|+. ....+++|+.|.+
T Consensus 316 w~sl~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 316 WRSLNHLRTLENLKHLRI 333 (505)
T ss_pred ccccchhhccchhhhhhc
Confidence 543 3334455555543
No 40
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.45 E-value=0.00011 Score=69.68 Aligned_cols=44 Identities=32% Similarity=0.506 Sum_probs=37.9
Q ss_pred ccccHHHHHHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 149 VVGLQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 149 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
|+||++++++|.+++..+..+.+.|+|+.|+|||+|++.+.+..
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 68999999999999988778899999999999999999999987
No 41
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.39 E-value=0.00058 Score=59.20 Aligned_cols=59 Identities=29% Similarity=0.333 Sum_probs=45.8
Q ss_pred cccHHHHHHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCC
Q 009534 150 VGLQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDL 211 (532)
Q Consensus 150 vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~ 211 (532)
+|++..++.+...+.....+.+.|+|..|+|||++++.+++.. . ..-..++++......
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~-~--~~~~~v~~~~~~~~~ 59 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANEL-F--RPGAPFLYLNASDLL 59 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh-h--cCCCCeEEEehhhhh
Confidence 4788889999999877677889999999999999999999987 2 222455666655433
No 42
>PRK08118 topology modulation protein; Reviewed
Probab=97.34 E-value=0.00014 Score=65.28 Aligned_cols=35 Identities=34% Similarity=0.699 Sum_probs=28.8
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhccCCC-CCCCeEEE
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSFLHTP-NNFDFVIW 204 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~F~~~~w 204 (532)
..|.|+|++|+||||+|+.+++.. ... -+||...|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l-~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKL-NIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh-CCCceecchhhc
Confidence 358899999999999999999997 443 46787775
No 43
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.32 E-value=5.5e-05 Score=75.58 Aligned_cols=137 Identities=18% Similarity=0.135 Sum_probs=80.1
Q ss_pred cCCCeEEEecCCCCC-----ccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCcccc
Q 009534 323 SNTPSLSLTNCRSLS-----SLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRH 397 (532)
Q Consensus 323 ~~L~~L~l~~c~~l~-----~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~ 397 (532)
++|+.|++++|. +. .++. .+..+++|+.|++.+|. +..-.... .......+++|++|++++|.+..
T Consensus 137 ~~L~~L~L~~n~-l~~~~~~~~~~-~~~~~~~L~~L~l~~n~-l~~~~~~~------l~~~l~~~~~L~~L~L~~n~i~~ 207 (319)
T cd00116 137 PALEKLVLGRNR-LEGASCEALAK-ALRANRDLKELNLANNG-IGDAGIRA------LAEGLKANCNLEVLDLNNNGLTD 207 (319)
T ss_pred CCceEEEcCCCc-CCchHHHHHHH-HHHhCCCcCEEECcCCC-CchHHHHH------HHHHHHhCCCCCEEeccCCccCh
Confidence 568999999886 33 1221 24556789999998874 33100000 00011235799999999997654
Q ss_pred CC------chhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeecccccccc-----ccCCCCcCCC
Q 009534 398 VT------WLILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLR-----SIYPRALPFP 466 (532)
Q Consensus 398 l~------~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~-----~i~~~~~~~p 466 (532)
.. .+..+++|++|++++|. +.......-.. ......++|++|++.+|. ++ .+......++
T Consensus 208 ~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~-------~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~ 278 (319)
T cd00116 208 EGASALAETLASLKSLEVLNLGDNN-LTDAGAAALAS-------ALLSPNISLLTLSLSCND-ITDDGAKDLAEVLAEKE 278 (319)
T ss_pred HHHHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHH-------HHhccCCCceEEEccCCC-CCcHHHHHHHHHHhcCC
Confidence 21 25567899999999875 33211100000 001124799999999873 32 2222344568
Q ss_pred CccEEeecCCC
Q 009534 467 HLKELHVTLCP 477 (532)
Q Consensus 467 ~L~~L~i~~C~ 477 (532)
.|+.++++++.
T Consensus 279 ~L~~l~l~~N~ 289 (319)
T cd00116 279 SLLELDLRGNK 289 (319)
T ss_pred CccEEECCCCC
Confidence 89999998853
No 44
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.29 E-value=3.8e-05 Score=72.69 Aligned_cols=32 Identities=19% Similarity=0.366 Sum_probs=14.1
Q ss_pred CCCccEEEEeCCccccC-CchhcCCCcceeeec
Q 009534 382 FFSLHKVSIWGSKLRHV-TWLILAPNLKLIQMY 413 (532)
Q Consensus 382 l~~L~~L~l~~c~L~~l-~~l~~l~~L~~L~l~ 413 (532)
+++|+.|++++|.|.++ -|-.++.|.++|.+.
T Consensus 328 L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 328 LPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred cccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 44444555544444332 233344444444443
No 45
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.25 E-value=2.3e-05 Score=76.98 Aligned_cols=110 Identities=16% Similarity=0.202 Sum_probs=73.7
Q ss_pred ccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCCchhcCCCcceeeeccccccccccc
Q 009534 344 LASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTWLILAPNLKLIQMYDCRCLEEIIS 423 (532)
Q Consensus 344 l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~l~~l~~L~~L~l~~c~~l~~i~~ 423 (532)
++.+++|..|++++- -+.++|.+... +..|+.|+|+.++++.+|-....+...++.+..-.++.+++.
T Consensus 431 l~~l~kLt~L~L~NN-~Ln~LP~e~~~-----------lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~ 498 (565)
T KOG0472|consen 431 LSQLQKLTFLDLSNN-LLNDLPEEMGS-----------LVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDP 498 (565)
T ss_pred HHhhhcceeeecccc-hhhhcchhhhh-----------hhhhheecccccccccchHHHhhHHHHHHHHhccccccccCh
Confidence 556666666666652 45556665543 556777777766666666533333322222323344555554
Q ss_pred cccccCcCcccCcccccccccceeeccccccccccCCCCcCCCCccEEeecCCCC
Q 009534 424 LEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIYPRALPFPHLKELHVTLCPK 478 (532)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~ 478 (532)
+.+..+.+|.+|++.+ ..+..+|+..++|.+|++|.+.|.|-
T Consensus 499 ------------~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 499 ------------SGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred ------------HHhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCcc
Confidence 3588899999999988 47889999999999999999999763
No 46
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.0033 Score=63.68 Aligned_cols=105 Identities=16% Similarity=0.209 Sum_probs=78.6
Q ss_pred CcccccHHHHHHHHHHhcc----CCceEEEEecCCCCcHHHHHHHHHHhccCCC-CCCCeEEEEEeCCCCCHHHHHHHHH
Q 009534 147 PTVVGLQSTLDRVWRCLTE----EPVGIVGLYGMGGVGKTTLLTQINNSFLHTP-NNFDFVIWEVVSRDLQLGKIQESIA 221 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~F~~~~wv~v~~~~~~~~l~~~i~ 221 (532)
+.+.+|+++++++...|.. ..+.-+-|+|..|+|||+.++.+..+. +.. ...+ +++|.+.......++...|+
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l-~~~~~~~~-~~yINc~~~~t~~~i~~~i~ 94 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEEL-EESSANVE-VVYINCLELRTPYQVLSKIL 94 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHH-HhhhccCc-eEEEeeeeCCCHHHHHHHHH
Confidence 4589999999999988753 233448899999999999999999998 322 2222 78888888889999999999
Q ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHhcC-CcEEEe
Q 009534 222 KKIGLCNESWDSKSFDEKAQEIFKTMRN-TKFLIS 255 (532)
Q Consensus 222 ~~l~~~~~~~~~~~~~~~~~~l~~~L~~-kr~LlV 255 (532)
+.++.... ...+..+....+.+.+.. ++.++|
T Consensus 95 ~~~~~~p~--~g~~~~~~~~~l~~~~~~~~~~~Iv 127 (366)
T COG1474 95 NKLGKVPL--TGDSSLEILKRLYDNLSKKGKTVIV 127 (366)
T ss_pred HHcCCCCC--CCCchHHHHHHHHHHHHhcCCeEEE
Confidence 99973321 455666677777777755 344555
No 47
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.20 E-value=8.9e-05 Score=73.40 Aligned_cols=179 Identities=18% Similarity=0.254 Sum_probs=95.2
Q ss_pred CCeEEEecCCCCCccccccc-cccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCC-ccccC--Cc
Q 009534 325 TPSLSLTNCRSLSSLSVLTL-ASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGS-KLRHV--TW 400 (532)
Q Consensus 325 L~~L~l~~c~~l~~l~~~~l-~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c-~L~~l--~~ 400 (532)
+-++++..|..++......+ ..+..|+.|..++|..+.+.+....+ .+.++|+.|.+.+| .++.. ..
T Consensus 270 i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg---------~~~~~L~~l~l~~c~~fsd~~ft~ 340 (483)
T KOG4341|consen 270 ILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALG---------QHCHNLQVLELSGCQQFSDRGFTM 340 (483)
T ss_pred hhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHh---------cCCCceEEEeccccchhhhhhhhh
Confidence 34445555555554443222 23556666666666665554443332 24567777777777 66552 22
Q ss_pred h-hcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeecccccccccc-----CCCCcCCCCccEEeec
Q 009534 401 L-ILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSI-----YPRALPFPHLKELHVT 474 (532)
Q Consensus 401 l-~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i-----~~~~~~~p~L~~L~i~ 474 (532)
+ ...+.|+.+++.+|..+..-.. .+-..+.|.|+.|.++.|...+.- .........|+.+.+.
T Consensus 341 l~rn~~~Le~l~~e~~~~~~d~tL-----------~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~ 409 (483)
T KOG4341|consen 341 LGRNCPHLERLDLEECGLITDGTL-----------ASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELD 409 (483)
T ss_pred hhcCChhhhhhcccccceehhhhH-----------hhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeec
Confidence 2 3466677777766655433211 013345677777777777655444 2233456667777777
Q ss_pred CCCCCCCCCCCC---CCCCCceeEEecchhhhhhc-----ccCccccccccccCccc
Q 009534 475 LCPKLKKLPFDC---TSGHERKLIIKGQEEWWNNL-----QWDDQATQNAFLPYFKT 523 (532)
Q Consensus 475 ~C~~L~~lp~~~---~~~l~~L~~~~~~~~w~~~l-----~w~~~~~~~~~~~~~~~ 523 (532)
+||.+..--... ...++....++|..-..+.. .--...+..+|-|.-+|
T Consensus 410 n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~a~~t~p 466 (483)
T KOG4341|consen 410 NCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYFAPVTPP 466 (483)
T ss_pred CCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhhccCCCCc
Confidence 777665432211 11245566666654333222 13334566666666655
No 48
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.19 E-value=9.9e-05 Score=80.64 Aligned_cols=34 Identities=21% Similarity=0.393 Sum_probs=19.4
Q ss_pred CCCCccEEEEeCCccccCCchhcCCCcceeeecc
Q 009534 381 GFFSLHKVSIWGSKLRHVTWLILAPNLKLIQMYD 414 (532)
Q Consensus 381 ~l~~L~~L~l~~c~L~~l~~l~~l~~L~~L~l~~ 414 (532)
+||||..|+|++++++.+.-++.|+||+.|.+.+
T Consensus 171 sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrn 204 (699)
T KOG3665|consen 171 SFPNLRSLDISGTNISNLSGISRLKNLQVLSMRN 204 (699)
T ss_pred ccCccceeecCCCCccCcHHHhccccHHHHhccC
Confidence 4566666666666555554455555655555543
No 49
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=6.3e-05 Score=74.80 Aligned_cols=162 Identities=18% Similarity=0.198 Sum_probs=83.5
Q ss_pred hcCCccCceeeEEeccchhHHHhhcCCcccccccCCCeEEEecCCCCCccccccc-cccccccceeeccccCcceeeecc
Q 009534 290 LLGLKHLNVLTITLHSFAALQRLLTYPSLQSIVSNTPSLSLTNCRSLSSLSVLTL-ASLRHLEALDMRYCKDLEEMEIDY 368 (532)
Q Consensus 290 l~~L~~L~~L~i~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~l-~~l~~L~~L~i~~c~~L~~l~~~~ 368 (532)
.+.+++++.|+++..-......+.. ...-|++|+.|+|+... +.....+.. ..+++|+.|.+++|. +..=.+.+
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~~---i~eqLp~Le~LNls~Nr-l~~~~~s~~~~~l~~lK~L~l~~CG-ls~k~V~~ 216 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVLK---IAEQLPSLENLNLSSNR-LSNFISSNTTLLLSHLKQLVLNSCG-LSWKDVQW 216 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHHH---HHHhcccchhccccccc-ccCCccccchhhhhhhheEEeccCC-CCHHHHHH
Confidence 4556666666654222222222211 11124557777776632 222211111 245667777777773 22111111
Q ss_pred cCCccccccccCCCCCccEEEEeCC-cccc-CCchhcCCCcceeeeccccccccccccccccCcCcccCcccccccccce
Q 009534 369 AGGEVKRIRETHGFFSLHKVSIWGS-KLRH-VTWLILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLER 446 (532)
Q Consensus 369 ~~~~~~~~~~~~~l~~L~~L~l~~c-~L~~-l~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~ 446 (532)
. ...||+|+.|.+.+| .+.. -.....+..|++|+|++.+. .+... ..-.+.||.|+.
T Consensus 217 ~---------~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~l-i~~~~-----------~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 217 I---------LLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNL-IDFDQ-----------GYKVGTLPGLNQ 275 (505)
T ss_pred H---------HHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcc-ccccc-----------ccccccccchhh
Confidence 1 135777777777776 3322 11234456677777766443 23321 125677899998
Q ss_pred eecccccccccc---CCC----CcCCCCccEEeecCCCC
Q 009534 447 LSLGGLENLRSI---YPR----ALPFPHLKELHVTLCPK 478 (532)
Q Consensus 447 L~l~~~~~L~~i---~~~----~~~~p~L~~L~i~~C~~ 478 (532)
|+++.| .+.++ +.+ ...||+|+.|++...+-
T Consensus 276 Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 276 LNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred hhcccc-CcchhcCCCccchhhhcccccceeeecccCcc
Confidence 888875 23333 221 24589999999887543
No 50
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.04 E-value=7.5e-05 Score=70.74 Aligned_cols=131 Identities=18% Similarity=0.185 Sum_probs=94.6
Q ss_pred hcCCccCceeeEEeccchhHHHhhcCCcccccccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeeccc
Q 009534 290 LLGLKHLNVLTITLHSFAALQRLLTYPSLQSIVSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYA 369 (532)
Q Consensus 290 l~~L~~L~~L~i~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~ 369 (532)
+...+.|.+++++.. .+..+-.+..+ .++++.|++++ +++..+.. +..+++|..|++++. .+..+ .+|.
T Consensus 280 ~dTWq~LtelDLS~N---~I~~iDESvKL---~Pkir~L~lS~-N~i~~v~n--La~L~~L~~LDLS~N-~Ls~~-~Gwh 348 (490)
T KOG1259|consen 280 ADTWQELTELDLSGN---LITQIDESVKL---APKLRRLILSQ-NRIRTVQN--LAELPQLQLLDLSGN-LLAEC-VGWH 348 (490)
T ss_pred cchHhhhhhcccccc---chhhhhhhhhh---ccceeEEeccc-cceeeehh--hhhcccceEeecccc-hhHhh-hhhH
Confidence 344556677775533 23344444444 35599999998 44655543 778899999999884 45544 3454
Q ss_pred CCccccccccCCCCCccEEEEeCCccccCCchhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeec
Q 009534 370 GGEVKRIRETHGFFSLHKVSIWGSKLRHVTWLILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSL 449 (532)
Q Consensus 370 ~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l 449 (532)
. .+-|+++|.+.+|.+..++-++++-+|+.|++++. +++.+.. -+.++++|.|+.+.+
T Consensus 349 ~----------KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N-~Ie~lde-----------V~~IG~LPCLE~l~L 406 (490)
T KOG1259|consen 349 L----------KLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSN-QIEELDE-----------VNHIGNLPCLETLRL 406 (490)
T ss_pred h----------hhcCEeeeehhhhhHhhhhhhHhhhhheecccccc-chhhHHH-----------hcccccccHHHHHhh
Confidence 4 58899999999998888888999999999999763 4665543 357899999999999
Q ss_pred cccc
Q 009534 450 GGLE 453 (532)
Q Consensus 450 ~~~~ 453 (532)
.+.|
T Consensus 407 ~~NP 410 (490)
T KOG1259|consen 407 TGNP 410 (490)
T ss_pred cCCC
Confidence 9876
No 51
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.99 E-value=0.0056 Score=67.04 Aligned_cols=100 Identities=13% Similarity=0.081 Sum_probs=68.1
Q ss_pred CCcccccHHHHHHHHHHhcc----C-CceEEEEecCCCCcHHHHHHHHHHhccCC---CCCCC--eEEEEEeCCCCCHHH
Q 009534 146 PPTVVGLQSTLDRVWRCLTE----E-PVGIVGLYGMGGVGKTTLLTQINNSFLHT---PNNFD--FVIWEVVSRDLQLGK 215 (532)
Q Consensus 146 ~~~~vGr~~~~~~l~~~L~~----~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~~F~--~~~wv~v~~~~~~~~ 215 (532)
++.++||++++++|...|.. . ...++-|.|+.|+|||+.++.|.... .. +.... .+++|......+...
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrEL-qeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLL-QHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHH-HHHHhhccCCCceEEEEeCCccCCHHH
Confidence 45678999999999998854 2 33577899999999999999998776 21 12222 245565556667888
Q ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHh
Q 009534 216 IQESIAKKIGLCNESWDSKSFDEKAQEIFKTM 247 (532)
Q Consensus 216 l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L 247 (532)
+...|..++...... ...+..+....+...+
T Consensus 833 IYqvI~qqL~g~~P~-~GlsS~evLerLF~~L 863 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPP-NALNSFKILDRLFNQN 863 (1164)
T ss_pred HHHHHHHHHcCCCCC-ccccHHHHHHHHHhhh
Confidence 899999888543321 2333444555566555
No 52
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=96.98 E-value=0.00084 Score=66.79 Aligned_cols=46 Identities=28% Similarity=0.433 Sum_probs=39.3
Q ss_pred CcccccHHHHHHHHHHhcc-----CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTE-----EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+|+|+++.++.+..++.. .....+-++|+.|+|||+||+.+.+..
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~ 54 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM 54 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999888862 345567899999999999999999887
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.90 E-value=0.00096 Score=45.09 Aligned_cols=39 Identities=15% Similarity=0.282 Sum_probs=28.0
Q ss_pred CCccEEEEeCCccccCCc-hhcCCCcceeeecccccccccc
Q 009534 383 FSLHKVSIWGSKLRHVTW-LILAPNLKLIQMYDCRCLEEII 422 (532)
Q Consensus 383 ~~L~~L~l~~c~L~~l~~-l~~l~~L~~L~l~~c~~l~~i~ 422 (532)
++|++|++++|+++.+|. +..+++|+.|++++++ +.+++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 467888888888888877 8888888888887764 55553
No 54
>PF05729 NACHT: NACHT domain
Probab=96.90 E-value=0.0038 Score=55.56 Aligned_cols=55 Identities=15% Similarity=0.298 Sum_probs=36.4
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhccCCCCC----CCeEEEEEeCCCCCHH---HHHHHHHHHh
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSFLHTPNN----FDFVIWEVVSRDLQLG---KIQESIAKKI 224 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----F~~~~wv~v~~~~~~~---~l~~~i~~~l 224 (532)
|++.|+|.+|+||||+++.+..+. ..... +...+|+......... .+...|..+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 62 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQL-AEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQL 62 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHH-HhcCcccccceEEEEEeehhhhhccccchHHHHHHHhh
Confidence 578999999999999999999888 33332 3456666655433322 3444444444
No 55
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.89 E-value=0.0013 Score=60.79 Aligned_cols=46 Identities=26% Similarity=0.356 Sum_probs=32.4
Q ss_pred CcccccHHHHHHHHHHhc-----cCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLT-----EEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++|||.++-++.+.-++. .+...-+-.||++|+||||||..+.+..
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~ 74 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL 74 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc
Confidence 468999877776544432 2346678899999999999999999988
No 56
>PLN03150 hypothetical protein; Provisional
Probab=96.88 E-value=0.0013 Score=71.97 Aligned_cols=91 Identities=16% Similarity=0.145 Sum_probs=59.8
Q ss_pred CCCCCccEEEEeCCccc-cCCc-hhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccc
Q 009534 380 HGFFSLHKVSIWGSKLR-HVTW-LILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRS 457 (532)
Q Consensus 380 ~~l~~L~~L~l~~c~L~-~l~~-l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~ 457 (532)
..+++|+.|+|++|.+. .+|. ++.+++|+.|+++++.-...++. .+..+++|+.|+|+++.--..
T Consensus 439 ~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~-------------~l~~L~~L~~L~Ls~N~l~g~ 505 (623)
T PLN03150 439 SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE-------------SLGQLTSLRILNLNGNSLSGR 505 (623)
T ss_pred hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCch-------------HHhcCCCCCEEECcCCccccc
Confidence 35778888888888665 3653 77788888888877653334544 677778888888877654446
Q ss_pred cCCCCcC-CCCccEEeecCCCCCCCCC
Q 009534 458 IYPRALP-FPHLKELHVTLCPKLKKLP 483 (532)
Q Consensus 458 i~~~~~~-~p~L~~L~i~~C~~L~~lp 483 (532)
+|..+.. +.++..+.+.+++.+...|
T Consensus 506 iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 506 VPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CChHHhhccccCceEEecCCccccCCC
Confidence 6654433 2456677777766655544
No 57
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.016 Score=61.75 Aligned_cols=63 Identities=19% Similarity=0.261 Sum_probs=47.9
Q ss_pred CcccccHHHHHHHHHHhccC------CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCHHH
Q 009534 147 PTVVGLQSTLDRVWRCLTEE------PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQLGK 215 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~~~~ 215 (532)
.+-+|+++-+++|++++.-+ +-+++..+|++|||||++|+.|.... ...|.. ++|+...|..+
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL---nRkFfR---fSvGG~tDvAe 479 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL---NRKFFR---FSVGGMTDVAE 479 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh---CCceEE---EeccccccHHh
Confidence 46699999999999998532 67899999999999999999999988 344432 33444444433
No 58
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=96.83 E-value=0.0002 Score=73.52 Aligned_cols=142 Identities=17% Similarity=0.148 Sum_probs=86.0
Q ss_pred CCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCCc-hhc
Q 009534 325 TPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTW-LIL 403 (532)
Q Consensus 325 L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~-l~~ 403 (532)
|..|+|+. +.+..+|.. +..|+ |+.|.+.+ .++..+|.... .++.|..|+.+.|.+..+|. ++.
T Consensus 123 lt~l~ls~-NqlS~lp~~-lC~lp-Lkvli~sN-Nkl~~lp~~ig-----------~~~tl~~ld~s~nei~slpsql~~ 187 (722)
T KOG0532|consen 123 LTFLDLSS-NQLSHLPDG-LCDLP-LKVLIVSN-NKLTSLPEEIG-----------LLPTLAHLDVSKNEIQSLPSQLGY 187 (722)
T ss_pred HHHhhhcc-chhhcCChh-hhcCc-ceeEEEec-CccccCCcccc-----------cchhHHHhhhhhhhhhhchHHhhh
Confidence 56666665 345666554 43333 66666655 35666655443 26677777777776666655 666
Q ss_pred CCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccccCCCCcCCCCccEEeecCCCCCCCCC
Q 009534 404 APNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIYPRALPFPHLKELHVTLCPKLKKLP 483 (532)
Q Consensus 404 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp 483 (532)
+.+|+.|.+.. +.+..++. .+. --.|..|+++ |.++..||.++..+..|++|.+.+. -|++-|
T Consensus 188 l~slr~l~vrR-n~l~~lp~-------------El~-~LpLi~lDfS-cNkis~iPv~fr~m~~Lq~l~LenN-PLqSPP 250 (722)
T KOG0532|consen 188 LTSLRDLNVRR-NHLEDLPE-------------ELC-SLPLIRLDFS-CNKISYLPVDFRKMRHLQVLQLENN-PLQSPP 250 (722)
T ss_pred HHHHHHHHHhh-hhhhhCCH-------------HHh-CCceeeeecc-cCceeecchhhhhhhhheeeeeccC-CCCCCh
Confidence 77777777754 34566665 343 2356677766 4677788887777888888887653 466666
Q ss_pred CCC-----CCCCCceeEEec
Q 009534 484 FDC-----TSGHERKLIIKG 498 (532)
Q Consensus 484 ~~~-----~~~l~~L~~~~~ 498 (532)
... .+..+.|.+..|
T Consensus 251 AqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 251 AQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred HHHHhccceeeeeeecchhc
Confidence 532 222455555555
No 59
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.02 Score=61.14 Aligned_cols=46 Identities=30% Similarity=0.402 Sum_probs=40.5
Q ss_pred CcccccHHHHHHHHHHhcc----C--CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTE----E--PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~----~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+-+|.++-+++|++.|.- + +-.++..+|++|||||+|++.|....
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al 374 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL 374 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh
Confidence 4569999999999999852 2 45799999999999999999999988
No 60
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.72 E-value=0.0028 Score=65.81 Aligned_cols=46 Identities=30% Similarity=0.383 Sum_probs=39.3
Q ss_pred CcccccHHHHHH---HHHHhccCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDR---VWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~---l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+++||.+..+.. +.+++..+....+-++|++|+||||+|+.+.+..
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 458998887666 8888877777788899999999999999999876
No 61
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.67 E-value=0.0004 Score=68.87 Aligned_cols=145 Identities=12% Similarity=0.231 Sum_probs=97.6
Q ss_pred cCCCeEEEecCCCCCccccccc-cccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCC-cccc--C
Q 009534 323 SNTPSLSLTNCRSLSSLSVLTL-ASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGS-KLRH--V 398 (532)
Q Consensus 323 ~~L~~L~l~~c~~l~~l~~~~l-~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c-~L~~--l 398 (532)
..|+.|+.++|..+...+...+ .+.++|+.|.+.+|..+.+......+ .+.+.|+.+++.+| .... +
T Consensus 294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~---------rn~~~Le~l~~e~~~~~~d~tL 364 (483)
T KOG4341|consen 294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLG---------RNCPHLERLDLEECGLITDGTL 364 (483)
T ss_pred hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhh---------cCChhhhhhcccccceehhhhH
Confidence 5588999999988877766555 46789999999999876655333222 35788899999988 4433 2
Q ss_pred -CchhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccccCC-CCcCCCCccEEeecCC
Q 009534 399 -TWLILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIYP-RALPFPHLKELHVTLC 476 (532)
Q Consensus 399 -~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~-~~~~~p~L~~L~i~~C 476 (532)
..-.++|.|+.|.++.|..+..-.-..- .........|..+.+.+||.+..-.- ....++.|+.+++.+|
T Consensus 365 ~sls~~C~~lr~lslshce~itD~gi~~l--------~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 365 ASLSRNCPRLRVLSLSHCELITDEGIRHL--------SSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred hhhccCCchhccCChhhhhhhhhhhhhhh--------hhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 1135688899999988876554411000 01234467788888889887654322 3456888898988888
Q ss_pred CCCCCCCC
Q 009534 477 PKLKKLPF 484 (532)
Q Consensus 477 ~~L~~lp~ 484 (532)
....+=|.
T Consensus 437 q~vtk~~i 444 (483)
T KOG4341|consen 437 QDVTKEAI 444 (483)
T ss_pred hhhhhhhh
Confidence 87765443
No 62
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.67 E-value=0.0024 Score=63.71 Aligned_cols=46 Identities=22% Similarity=0.387 Sum_probs=40.8
Q ss_pred CcccccHHHHHHHHHHhcc------CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTE------EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+++|.++.++++++++.. ...+++.++|+.|+||||+|+.+.+..
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3789999999999999864 256899999999999999999998887
No 63
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=96.65 E-value=0.033 Score=60.74 Aligned_cols=61 Identities=20% Similarity=0.187 Sum_probs=46.6
Q ss_pred CcccccHHHHHHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhccCCCCCC---CeEEEEEeC
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNF---DFVIWEVVS 208 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F---~~~~wv~v~ 208 (532)
++++|.+..++.+.+.+.......+.|+|+.|+||||+|+.+++.. .....+ ...-|+.+.
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~-~~~~~~~~~~~~~fv~i~ 217 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEA-KKLKHTPFAEDAPFVEVD 217 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhh-hhccCCcccCCCCeEEEe
Confidence 3579999999999888876667789999999999999999998876 333333 133566553
No 64
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=96.61 E-value=0.0024 Score=64.24 Aligned_cols=46 Identities=30% Similarity=0.427 Sum_probs=39.0
Q ss_pred CcccccHHHHHHHHHHhcc-----CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTE-----EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+|+|+++.++.+..++.. .....+-|+|+.|+|||++|+.+.+..
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l 75 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM 75 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh
Confidence 5689999999998877752 245678899999999999999999987
No 65
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.60 E-value=0.1 Score=54.81 Aligned_cols=85 Identities=18% Similarity=0.316 Sum_probs=45.8
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCC-CCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHH
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRD-LQLGKIQESIAKKIGLCNESWDSKSFDEKAQEIFK 245 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~-~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 245 (532)
...+++|+|..|+||||++..+.... ..+.....+..++.... .....-+......++.... ...+...... ..+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~l-a~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~--~a~d~~~L~~-aL~ 424 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRF-AAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH--EADSAESLLD-LLE 424 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCceEEEecccccccHHHHHHHhhcccCceeE--ecCcHHHHHH-HHH
Confidence 35899999999999999999988765 22222234555543221 1112222222223332211 1223333443 334
Q ss_pred HhcCCcEEEe
Q 009534 246 TMRNTKFLIS 255 (532)
Q Consensus 246 ~L~~kr~LlV 255 (532)
.+.+..++||
T Consensus 425 ~l~~~DLVLI 434 (559)
T PRK12727 425 RLRDYKLVLI 434 (559)
T ss_pred HhccCCEEEe
Confidence 5677888888
No 66
>PLN03150 hypothetical protein; Provisional
Probab=96.58 E-value=0.0025 Score=69.69 Aligned_cols=91 Identities=16% Similarity=0.068 Sum_probs=73.7
Q ss_pred CccEEEEeCCcccc-CCc-hhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccccCCC
Q 009534 384 SLHKVSIWGSKLRH-VTW-LILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIYPR 461 (532)
Q Consensus 384 ~L~~L~l~~c~L~~-l~~-l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~~ 461 (532)
.++.|+|.+|.+.. +|. ++.+++|+.|+++++.-...++. .+..+++|+.|+|+++.--..+|..
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~-------------~~~~l~~L~~LdLs~N~lsg~iP~~ 485 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPP-------------SLGSITSLEVLDLSYNSFNGSIPES 485 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCCh-------------HHhCCCCCCEEECCCCCCCCCCchH
Confidence 47889999997765 554 88899999999998764445655 7888999999999998655578888
Q ss_pred CcCCCCccEEeecCCCCCCCCCCCCC
Q 009534 462 ALPFPHLKELHVTLCPKLKKLPFDCT 487 (532)
Q Consensus 462 ~~~~p~L~~L~i~~C~~L~~lp~~~~ 487 (532)
.+.+++|+.|++++|.--..+|....
T Consensus 486 l~~L~~L~~L~Ls~N~l~g~iP~~l~ 511 (623)
T PLN03150 486 LGQLTSLRILNLNGNSLSGRVPAALG 511 (623)
T ss_pred HhcCCCCCEEECcCCcccccCChHHh
Confidence 88999999999999976668887544
No 67
>PRK07261 topology modulation protein; Provisional
Probab=96.58 E-value=0.0056 Score=55.22 Aligned_cols=35 Identities=23% Similarity=0.563 Sum_probs=25.9
Q ss_pred EEEEecCCCCcHHHHHHHHHHhccCCC-CCCCeEEEE
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSFLHTP-NNFDFVIWE 205 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~F~~~~wv 205 (532)
.|.|+|++|+||||||+.+.... ... -+.|...|-
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~-~~~~i~~D~~~~~ 37 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY-NCPVLHLDTLHFQ 37 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh-CCCeEecCCEEec
Confidence 48899999999999999998765 222 144555553
No 68
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.53 E-value=0.0021 Score=54.11 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=21.6
Q ss_pred EEEEecCCCCcHHHHHHHHHHhc
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+|.|.|+.|+||||+|+.+.++.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999886
No 69
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=96.50 E-value=0.0046 Score=59.08 Aligned_cols=102 Identities=11% Similarity=0.059 Sum_probs=75.4
Q ss_pred cchhhHHHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q 009534 9 FSCDGTISRCLDCIVSKAGYICHLKDNLYALRTDFQKLIEARNDVQIRVIVAEQRQMRRLQQVQGWLSRVQDVEKEVPRL 88 (532)
Q Consensus 9 ~~~~~v~~kl~~~~~~~~~~~~~~~~~~~~L~~~l~~l~~~l~~v~~~i~~ae~~~~~~~~~~~~Wl~~lr~~~~d~ed~ 88 (532)
+.++-+++++..+..+....+.-++.+++-++.+++.++.+|+.+ ++....+.+. ......++.+.||++|.+
T Consensus 296 GyVdFlL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V------~ee~~nkh~~-~ed~a~~ii~kAyevEYV 368 (402)
T PF12061_consen 296 GYVDFLLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHV------VEEPHNKHDT-NEDCATQIIRKAYEVEYV 368 (402)
T ss_pred cHHHHHHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHH------Hhccchhhhh-hhhHHHHHHHHHhheeee
Confidence 346778888888888888888889999999999999999999886 5665554434 899999999999999999
Q ss_pred Hhc---cccCCCCCCchhhhchHHHHHHHHHHHH
Q 009534 89 SRK---INLGGFCSGNCVERYKDGKRVVELLKNV 119 (532)
Q Consensus 89 id~---~~~~~~~~~~~~~r~~i~~~i~~i~~~i 119 (532)
+|. +..+.+| ...+-+++...|..+++++
T Consensus 369 VDaCi~k~~P~Wc--l~~WL~dIieei~~ik~~i 400 (402)
T PF12061_consen 369 VDACISKSVPHWC--LERWLLDIIEEITCIKAKI 400 (402)
T ss_pred eehhhcCCCcHHH--HHHHHHHHHHHHHHHHHHh
Confidence 998 1223333 2233345555555555554
No 70
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.44 E-value=0.061 Score=52.25 Aligned_cols=106 Identities=15% Similarity=0.215 Sum_probs=71.6
Q ss_pred CcccccH---HHHHHHHHHhccC---CceEEEEecCCCCcHHHHHHHHHHhccCCCCCC----CeEEEEEeCCCCCHHHH
Q 009534 147 PTVVGLQ---STLDRVWRCLTEE---PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNF----DFVIWEVVSRDLQLGKI 216 (532)
Q Consensus 147 ~~~vGr~---~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F----~~~~wv~v~~~~~~~~l 216 (532)
+..+|-. +-++++.+++... ...-+-|+|..|.|||++++++...+ .....= -.++.|.....++...+
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~h-p~~~d~~~~~~PVv~vq~P~~p~~~~~ 112 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLH-PPQSDEDAERIPVVYVQMPPEPDERRF 112 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHC-CCCCCCCCccccEEEEecCCCCChHHH
Confidence 4556643 3344444445443 45668999999999999999998877 322111 14667778889999999
Q ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhc--CCcEEEe
Q 009534 217 QESIAKKIGLCNESWDSKSFDEKAQEIFKTMR--NTKFLIS 255 (532)
Q Consensus 217 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlV 255 (532)
...|+.+++.+.. ...+...........++ +-|.|||
T Consensus 113 Y~~IL~~lgaP~~--~~~~~~~~~~~~~~llr~~~vrmLII 151 (302)
T PF05621_consen 113 YSAILEALGAPYR--PRDRVAKLEQQVLRLLRRLGVRMLII 151 (302)
T ss_pred HHHHHHHhCcccC--CCCCHHHHHHHHHHHHHHcCCcEEEe
Confidence 9999999998764 33344444444444553 5678888
No 71
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.40 E-value=0.027 Score=55.72 Aligned_cols=74 Identities=26% Similarity=0.348 Sum_probs=63.5
Q ss_pred CCcccccHHHHHHHHHHhccCCc---eEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 009534 146 PPTVVGLQSTLDRVWRCLTEEPV---GIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQLGKIQESIAK 222 (532)
Q Consensus 146 ~~~~vGr~~~~~~l~~~L~~~~~---~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~ 222 (532)
++.+.+|+.++..+..++.+... ..+-|+|..|.|||.+.+.+++.. . ...+|+++-..+....++..|+.
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~-n-----~~~vw~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL-N-----LENVWLNCVECFTYAILLEKILN 78 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc-C-----CcceeeehHHhccHHHHHHHHHH
Confidence 36789999999999999987543 445789999999999999999987 2 24689999999999999999999
Q ss_pred Hhc
Q 009534 223 KIG 225 (532)
Q Consensus 223 ~l~ 225 (532)
+..
T Consensus 79 ~~~ 81 (438)
T KOG2543|consen 79 KSQ 81 (438)
T ss_pred Hhc
Confidence 995
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.33 E-value=0.00029 Score=74.60 Aligned_cols=136 Identities=23% Similarity=0.373 Sum_probs=62.4
Q ss_pred cCCCeEEEecCCCCCcccccccc-ccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCC-cccc--C
Q 009534 323 SNTPSLSLTNCRSLSSLSVLTLA-SLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGS-KLRH--V 398 (532)
Q Consensus 323 ~~L~~L~l~~c~~l~~l~~~~l~-~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c-~L~~--l 398 (532)
.+|+.|++++|..++..-...+. .+++|+.|.+.+|..+.+-..... ...+++|++|++++| .++. +
T Consensus 243 ~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i---------~~~~~~L~~L~l~~c~~~~d~~l 313 (482)
T KOG1947|consen 243 RKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSI---------AERCPSLRELDLSGCHGLTDSGL 313 (482)
T ss_pred CCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHH---------HHhcCcccEEeeecCccchHHHH
Confidence 44556666655544444333232 245566666555554332211111 123555666666666 5433 1
Q ss_pred C-chhcCCCcceeeecccc---ccccccccccccCcCcccCcccccc--cccceeeccccccccccCCCCcCCCCcc-EE
Q 009534 399 T-WLILAPNLKLIQMYDCR---CLEEIISLEKLGEVPSEEMQNLIPF--ARLERLSLGGLENLRSIYPRALPFPHLK-EL 471 (532)
Q Consensus 399 ~-~l~~l~~L~~L~l~~c~---~l~~i~~~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~L~~i~~~~~~~p~L~-~L 471 (532)
. ....+++|+.|.+..+. .++.... ...... -.+..+.+.+|++++.+........... .+
T Consensus 314 ~~~~~~c~~l~~l~~~~~~~c~~l~~~~l------------~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 381 (482)
T KOG1947|consen 314 EALLKNCPNLRELKLLSLNGCPSLTDLSL------------SGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLEL 381 (482)
T ss_pred HHHHHhCcchhhhhhhhcCCCccHHHHHH------------HHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHH
Confidence 1 13335555554443332 2332211 011111 1566677777777766643222222233 46
Q ss_pred eecCCCCC
Q 009534 472 HVTLCPKL 479 (532)
Q Consensus 472 ~i~~C~~L 479 (532)
.+.+||+|
T Consensus 382 ~l~gc~~l 389 (482)
T KOG1947|consen 382 SLRGCPNL 389 (482)
T ss_pred HhcCCccc
Confidence 66777777
No 73
>PRK06696 uridine kinase; Validated
Probab=96.28 E-value=0.0069 Score=57.22 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=34.6
Q ss_pred cHHHHHHHHHHhc---cCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 152 LQSTLDRVWRCLT---EEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 152 r~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
|.+-+++|.+.+. .++..+|+|.|..|+||||+|+.+....
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 5666777777775 3478899999999999999999999877
No 74
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=96.27 E-value=0.00063 Score=70.05 Aligned_cols=154 Identities=18% Similarity=0.211 Sum_probs=112.0
Q ss_pred chhhhcCCccCceeeEEeccchhHHHhhcCCcccccccCCCeEEEecCCCCCccccccccccccccceeeccccCcceee
Q 009534 286 LVEELLGLKHLNVLTITLHSFAALQRLLTYPSLQSIVSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEME 365 (532)
Q Consensus 286 ~~~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~ 365 (532)
..+.+.+|..|.+++++.... ..++... |.--|+.|.+++ ++++.+|.. ++.++.|..|+.+.| ++.++|
T Consensus 113 ip~~i~~L~~lt~l~ls~Nql---S~lp~~l----C~lpLkvli~sN-Nkl~~lp~~-ig~~~tl~~ld~s~n-ei~slp 182 (722)
T KOG0532|consen 113 IPEAICNLEALTFLDLSSNQL---SHLPDGL----CDLPLKVLIVSN-NKLTSLPEE-IGLLPTLAHLDVSKN-EIQSLP 182 (722)
T ss_pred cchhhhhhhHHHHhhhccchh---hcCChhh----hcCcceeEEEec-CccccCCcc-cccchhHHHhhhhhh-hhhhch
Confidence 455566677777777652222 2222211 334488999888 569999977 778889999999886 666677
Q ss_pred ecccCCccccccccCCCCCccEEEEeCCccccCCc-hhcCCCcceeeeccccccccccccccccCcCcccCccccccccc
Q 009534 366 IDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTW-LILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARL 444 (532)
Q Consensus 366 ~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~-l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L 444 (532)
.... .+.+|+.|+++.+++.++|. +..| .|..|++ .|+++..||- .+..+..|
T Consensus 183 sql~-----------~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDf-ScNkis~iPv-------------~fr~m~~L 236 (722)
T KOG0532|consen 183 SQLG-----------YLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDF-SCNKISYLPV-------------DFRKMRHL 236 (722)
T ss_pred HHhh-----------hHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeec-ccCceeecch-------------hhhhhhhh
Confidence 7554 48999999999998888876 4433 4778888 5899999988 88999999
Q ss_pred ceeeccccccccccCCC---CcCCCCccEEeecCC
Q 009534 445 ERLSLGGLENLRSIYPR---ALPFPHLKELHVTLC 476 (532)
Q Consensus 445 ~~L~l~~~~~L~~i~~~---~~~~p~L~~L~i~~C 476 (532)
++|.|.+.| |++=|.. .+...=.++|.+.-|
T Consensus 237 q~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 237 QVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence 999999876 5554432 344555788888888
No 75
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.021 Score=55.26 Aligned_cols=75 Identities=15% Similarity=0.131 Sum_probs=49.4
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhccCCC--CCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHH
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSFLHTP--NNFDFVIWEVVSRDLQLGKIQESIAKKIGLCNESWDSKSFDEKAQEIFK 245 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 245 (532)
-++|-++|++|.|||+|.++++++. .++ +.|....-+.++. ..+..+.+.. ..+-...+-++|.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkL-SIR~~~~y~~~~liEins----hsLFSKWFsE--------SgKlV~kmF~kI~E 243 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKL-SIRTNDRYYKGQLIEINS----HSLFSKWFSE--------SGKLVAKMFQKIQE 243 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhh-eeeecCccccceEEEEeh----hHHHHHHHhh--------hhhHHHHHHHHHHH
Confidence 5888999999999999999999998 544 3444444454432 2333333221 23445666777788
Q ss_pred HhcCCcEEEe
Q 009534 246 TMRNTKFLIS 255 (532)
Q Consensus 246 ~L~~kr~LlV 255 (532)
.+.++..|+.
T Consensus 244 Lv~d~~~lVf 253 (423)
T KOG0744|consen 244 LVEDRGNLVF 253 (423)
T ss_pred HHhCCCcEEE
Confidence 8888775554
No 76
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.24 E-value=0.0036 Score=64.67 Aligned_cols=78 Identities=22% Similarity=0.350 Sum_probs=53.0
Q ss_pred CCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCCch-h
Q 009534 324 NTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTWL-I 402 (532)
Q Consensus 324 ~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~l-~ 402 (532)
+|+.|++++ ..+..+|.. +..+++|+.|.+.++ .+..++.... ..++|+.|+++++++..+|.. .
T Consensus 141 nL~~L~l~~-N~i~~l~~~-~~~l~~L~~L~l~~N-~l~~l~~~~~-----------~~~~L~~L~ls~N~i~~l~~~~~ 206 (394)
T COG4886 141 NLKELDLSD-NKIESLPSP-LRNLPNLKNLDLSFN-DLSDLPKLLS-----------NLSNLNNLDLSGNKISDLPPEIE 206 (394)
T ss_pred hcccccccc-cchhhhhhh-hhccccccccccCCc-hhhhhhhhhh-----------hhhhhhheeccCCccccCchhhh
Confidence 588888887 447777522 677888888888886 4555554321 367788888888877777764 3
Q ss_pred cCCCcceeeeccc
Q 009534 403 LAPNLKLIQMYDC 415 (532)
Q Consensus 403 ~l~~L~~L~l~~c 415 (532)
.+.+|++|.+.+.
T Consensus 207 ~~~~L~~l~~~~N 219 (394)
T COG4886 207 LLSALEELDLSNN 219 (394)
T ss_pred hhhhhhhhhhcCC
Confidence 4455777777654
No 77
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.24 E-value=0.0016 Score=60.96 Aligned_cols=107 Identities=18% Similarity=0.233 Sum_probs=63.9
Q ss_pred ccCCCeEEEecCCCCCccccccccccccccceeeccc--cCcceeeecccCCccccccccCCCCCccEEEEeCCccc---
Q 009534 322 VSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYC--KDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLR--- 396 (532)
Q Consensus 322 l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c--~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~--- 396 (532)
+.+|+.|++.++- ++++ ..++.|++|+.|.++.- ...-.++.-. ..+|+|++|++++|+++
T Consensus 42 ~~~le~ls~~n~g-ltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~-----------e~~P~l~~l~ls~Nki~~ls 107 (260)
T KOG2739|consen 42 FVELELLSVINVG-LTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLA-----------EKAPNLKVLNLSGNKIKDLS 107 (260)
T ss_pred ccchhhhhhhccc-eeec--ccCCCcchhhhhcccCCcccccccceehh-----------hhCCceeEEeecCCcccccc
Confidence 4456666666543 3333 23677888899888754 1111222222 24689999999998444
Q ss_pred cCCchhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeecccc
Q 009534 397 HVTWLILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGL 452 (532)
Q Consensus 397 ~l~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 452 (532)
.++.+..++||..|++.+|+... +.. .. ...+.-+|+|++|+-.+.
T Consensus 108 tl~pl~~l~nL~~Ldl~n~~~~~-l~d-----yr----e~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 108 TLRPLKELENLKSLDLFNCSVTN-LDD-----YR----EKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred ccchhhhhcchhhhhcccCCccc-ccc-----HH----HHHHHHhhhhcccccccc
Confidence 35567788888899998887544 111 00 013444677777776554
No 78
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=96.24 E-value=0.013 Score=57.42 Aligned_cols=46 Identities=22% Similarity=0.265 Sum_probs=34.3
Q ss_pred HHHHhccCCceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCC
Q 009534 159 VWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSR 209 (532)
Q Consensus 159 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~ 209 (532)
+..++..+.+.-+-.||++|+||||||+.+.... +... ..+|+.+-
T Consensus 153 lrs~ieq~~ipSmIlWGppG~GKTtlArlia~ts-k~~S----yrfvelSA 198 (554)
T KOG2028|consen 153 LRSLIEQNRIPSMILWGPPGTGKTTLARLIASTS-KKHS----YRFVELSA 198 (554)
T ss_pred HHHHHHcCCCCceEEecCCCCchHHHHHHHHhhc-CCCc----eEEEEEec
Confidence 4445556788889999999999999999999876 3222 45666554
No 79
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.21 E-value=0.011 Score=58.97 Aligned_cols=45 Identities=31% Similarity=0.393 Sum_probs=34.8
Q ss_pred cccccHHHH---HHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 148 TVVGLQSTL---DRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 148 ~~vGr~~~~---~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++||.+.-+ .-|.+++..+.+.-.-.||++|+||||||+.+....
T Consensus 25 e~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~ 72 (436)
T COG2256 25 EVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT 72 (436)
T ss_pred HhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh
Confidence 456665433 345566667788888899999999999999998876
No 80
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.18 E-value=0.0065 Score=61.27 Aligned_cols=46 Identities=17% Similarity=0.333 Sum_probs=40.9
Q ss_pred CcccccHHHHHHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++++|+++.++.+.+++..+..+.+-++|+.|+||||+|+.+.+..
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l 60 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALAREL 60 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999988776667899999999999999998877
No 81
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=96.14 E-value=0.037 Score=55.25 Aligned_cols=69 Identities=16% Similarity=0.309 Sum_probs=50.3
Q ss_pred CcccccHHHHHHHHHHhccCC-ceEEEEecCCCCcHHHHHHHHHHhcc---CCCCCCCeEEEEE-eCCCCCHHH
Q 009534 147 PTVVGLQSTLDRVWRCLTEEP-VGIVGLYGMGGVGKTTLLTQINNSFL---HTPNNFDFVIWEV-VSRDLQLGK 215 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~~F~~~~wv~-v~~~~~~~~ 215 (532)
.+++|.+..++.+.+++..++ .+..-++|+.|+||||+|+.++.... ....|+|...|.. -+....+.+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH
Confidence 457899999999999998765 46778999999999999999988652 1234667665654 233344444
No 82
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.13 E-value=0.021 Score=57.03 Aligned_cols=46 Identities=22% Similarity=0.325 Sum_probs=41.1
Q ss_pred CcccccHHHHHHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+++|+++.++.+..++..+..+.+-++|..|+||||+|+.+.+..
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALAREL 62 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999987766678999999999999999999886
No 83
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.12 E-value=0.0069 Score=63.73 Aligned_cols=45 Identities=22% Similarity=0.403 Sum_probs=40.3
Q ss_pred cccccHHHHHHHHHHhc------cCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 148 TVVGLQSTLDRVWRCLT------EEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 148 ~~vGr~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+++|.++.+++|++.|. ..+.+++.++|+.|+||||||+.+..-.
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 57999999999999983 3467899999999999999999999877
No 84
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.12 E-value=0.0063 Score=68.77 Aligned_cols=46 Identities=26% Similarity=0.373 Sum_probs=39.9
Q ss_pred CcccccHHHHHHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+.++||+++++.+++.|......-+-++|.+|+|||++|+.+....
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i 224 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRI 224 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999987654455699999999999999998876
No 85
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.11 E-value=0.01 Score=56.12 Aligned_cols=55 Identities=16% Similarity=0.143 Sum_probs=40.5
Q ss_pred cHHHHHHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCC
Q 009534 152 LQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSR 209 (532)
Q Consensus 152 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~ 209 (532)
.+..++.+.+++.......+-++|..|+|||++|+.+++... ......++++++.
T Consensus 22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~---~~~~~~~~i~~~~ 76 (226)
T TIGR03420 22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAE---ERGKSAIYLPLAE 76 (226)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHH---hcCCcEEEEeHHH
Confidence 455677777776666677899999999999999999998872 2334456665433
No 86
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.0002 Score=67.93 Aligned_cols=158 Identities=18% Similarity=0.154 Sum_probs=101.9
Q ss_pred ccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccc-c-CC
Q 009534 322 VSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLR-H-VT 399 (532)
Q Consensus 322 l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~-~-l~ 399 (532)
+++|+.|.|.+.. +..--...+..-.+|+.|+++.|..+.+...... ..++..|..|+|+.|.+. . +.
T Consensus 209 C~kLk~lSlEg~~-LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll---------~~scs~L~~LNlsWc~l~~~~Vt 278 (419)
T KOG2120|consen 209 CSKLKNLSLEGLR-LDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLL---------LSSCSRLDELNLSWCFLFTEKVT 278 (419)
T ss_pred HHhhhhccccccc-cCcHHHHHHhccccceeeccccccccchhHHHHH---------HHhhhhHhhcCchHhhccchhhh
Confidence 4778888888754 3332222355567999999999988876543222 136889999999999443 3 22
Q ss_pred c--hhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccccCC-CCcCCCCccEEeecCC
Q 009534 400 W--LILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIYP-RALPFPHLKELHVTLC 476 (532)
Q Consensus 400 ~--l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~-~~~~~p~L~~L~i~~C 476 (532)
. .+--++|..|+|++|..--.... . ..-...+|+|..|+|++|-.|+.-.. .+..|+.|++|.++.|
T Consensus 279 v~V~hise~l~~LNlsG~rrnl~~sh------~----~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRC 348 (419)
T KOG2120|consen 279 VAVAHISETLTQLNLSGYRRNLQKSH------L----STLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRC 348 (419)
T ss_pred HHHhhhchhhhhhhhhhhHhhhhhhH------H----HHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhh
Confidence 2 23357899999999864221111 0 00234589999999999988876333 4567999999999999
Q ss_pred CCCCC---CCCCCCCCCCceeEEecc
Q 009534 477 PKLKK---LPFDCTSGHERKLIIKGQ 499 (532)
Q Consensus 477 ~~L~~---lp~~~~~~l~~L~~~~~~ 499 (532)
=-+-- +-+.....+..|.+.+|-
T Consensus 349 Y~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 349 YDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred cCCChHHeeeeccCcceEEEEecccc
Confidence 65421 111222225666666653
No 87
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.08 E-value=0.00054 Score=72.60 Aligned_cols=37 Identities=19% Similarity=0.274 Sum_probs=17.1
Q ss_pred CCCccEEEEeCC-ccccC--Cc-hhcCCCcceeeecccccc
Q 009534 382 FFSLHKVSIWGS-KLRHV--TW-LILAPNLKLIQMYDCRCL 418 (532)
Q Consensus 382 l~~L~~L~l~~c-~L~~l--~~-l~~l~~L~~L~l~~c~~l 418 (532)
+++|++|++.+| .++.. .. ...+++|++|+|++|..+
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 445555555555 44331 11 233555555555555544
No 88
>PRK06547 hypothetical protein; Provisional
Probab=96.06 E-value=0.01 Score=53.50 Aligned_cols=36 Identities=25% Similarity=0.159 Sum_probs=29.8
Q ss_pred HHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 157 DRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 157 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+.+...+......+|+|.|+.|+||||+|+.+.+..
T Consensus 4 ~~~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 4 ALIAARLCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 344555666788999999999999999999998875
No 89
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=96.06 E-value=0.04 Score=47.98 Aligned_cols=114 Identities=11% Similarity=0.095 Sum_probs=85.9
Q ss_pred CCceecccchhhHHHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Q 009534 2 GNVCSAQFSCDGTISRCLDCIVSKAGYICHLKDNLYALRTDFQKLIEARNDVQIRVIVAEQRQMRRLQQVQGWLSRVQDV 81 (532)
Q Consensus 2 ~~~~~~~~~~~~v~~kl~~~~~~~~~~~~~~~~~~~~L~~~l~~l~~~l~~v~~~i~~ae~~~~~~~~~~~~Wl~~lr~~ 81 (532)
.+.++.+++++.+++.+...+.+.......++.-++.|..+++.|...+.+++..=.+ -|..-+.=++++.++
T Consensus 2 ~~eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~e-------ld~~~~ee~e~L~~~ 74 (147)
T PF05659_consen 2 IAELVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVE-------LDRPRQEEIERLKEL 74 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhh-------cCCchhHHHHHHHHH
Confidence 3445577889999999999999999999999999999999999999999886544111 122236667889999
Q ss_pred HHHHHHHHhccccCCCCCCchhhhchHHHHHHHHHHHHHHHHh
Q 009534 82 EKEVPRLSRKINLGGFCSGNCVERYKDGKRVVELLKNVQSLRK 124 (532)
Q Consensus 82 ~~d~ed~id~~~~~~~~~~~~~~r~~i~~~i~~i~~~i~~l~~ 124 (532)
..+++++++...... -+++...++.+++|+++.+.+.....
T Consensus 75 L~~g~~LV~k~sk~~--r~n~~kk~~y~~Ki~~le~~l~~f~~ 115 (147)
T PF05659_consen 75 LEKGKELVEKCSKVR--RWNLYKKPRYARKIEELEESLRRFIQ 115 (147)
T ss_pred HHHHHHHHHHhcccc--HHHHHhhHhHHHHHHHHHHHHHHHhc
Confidence 999999998821111 12556677789999999998876654
No 90
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.02 E-value=0.005 Score=58.72 Aligned_cols=182 Identities=21% Similarity=0.222 Sum_probs=100.9
Q ss_pred hcCCccCceeeEEeccc-hhHHHhhcCCcccccccCCCeEEEecCCCCCcc-ccccccccccccceeeccccCcceeeec
Q 009534 290 LLGLKHLNVLTITLHSF-AALQRLLTYPSLQSIVSNTPSLSLTNCRSLSSL-SVLTLASLRHLEALDMRYCKDLEEMEID 367 (532)
Q Consensus 290 l~~L~~L~~L~i~~~~~-~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~l~~l~~L~~L~i~~c~~L~~l~~~ 367 (532)
+++||+|++|+++-... +.+..+| . -+.||+.|.|.+- .+.-- ..+.+..+|.++.|+++.. ++..+-.+
T Consensus 93 le~lP~l~~LNls~N~L~s~I~~lp---~---p~~nl~~lVLNgT-~L~w~~~~s~l~~lP~vtelHmS~N-~~rq~n~D 164 (418)
T KOG2982|consen 93 LEQLPALTTLNLSCNSLSSDIKSLP---L---PLKNLRVLVLNGT-GLSWTQSTSSLDDLPKVTELHMSDN-SLRQLNLD 164 (418)
T ss_pred HhcCccceEeeccCCcCCCccccCc---c---cccceEEEEEcCC-CCChhhhhhhhhcchhhhhhhhccc-hhhhhccc
Confidence 56788888888653322 2222222 1 1356888888762 22211 1122456777777777652 33333221
Q ss_pred ccCCccccccccCCCCCccEEEEeCC-cccc--CCch-hcCCCcceeeeccccccccccccccccCcCcccCcccccccc
Q 009534 368 YAGGEVKRIRETHGFFSLHKVSIWGS-KLRH--VTWL-ILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFAR 443 (532)
Q Consensus 368 ~~~~~~~~~~~~~~l~~L~~L~l~~c-~L~~--l~~l-~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~ 443 (532)
-.. . ..--+-+++|+...| -..- .--+ ..+||+..+.+..|+ ++.... ......||.
T Consensus 165 d~c--~-----e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s~-----------ek~se~~p~ 225 (418)
T KOG2982|consen 165 DNC--I-----EDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTESS-----------EKGSEPFPS 225 (418)
T ss_pred ccc--c-----cccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccchhh-----------cccCCCCCc
Confidence 111 0 001235666777777 2221 1112 347889988888876 444432 124455777
Q ss_pred cceeeccccccccccCC--CCcCCCCccEEeecCCCCCCCCCCCCCCC-----CCceeEEecc
Q 009534 444 LERLSLGGLENLRSIYP--RALPFPHLKELHVTLCPKLKKLPFDCTSG-----HERKLIIKGQ 499 (532)
Q Consensus 444 L~~L~l~~~~~L~~i~~--~~~~~p~L~~L~i~~C~~L~~lp~~~~~~-----l~~L~~~~~~ 499 (532)
+-.|+|.. .++.+|.. ....||+|..|.+.+-|-...+.-+.... +.++...++.
T Consensus 226 ~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 226 LSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred chhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 77777765 45666644 45568999999999888777665443322 5666666655
No 91
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.00 E-value=0.0081 Score=67.77 Aligned_cols=46 Identities=22% Similarity=0.277 Sum_probs=40.3
Q ss_pred CcccccHHHHHHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+.++||++++.++++.|......-+-++|.+|+||||+|+.+....
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i 232 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRI 232 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHH
Confidence 4679999999999999887655556699999999999999999876
No 92
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.95 E-value=0.0052 Score=41.48 Aligned_cols=33 Identities=30% Similarity=0.436 Sum_probs=17.7
Q ss_pred CCCeEEEecCCCCCccccccccccccccceeeccc
Q 009534 324 NTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYC 358 (532)
Q Consensus 324 ~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c 358 (532)
+|++|+++++ .++.+|.. +.+|++|+.|+++++
T Consensus 2 ~L~~L~l~~N-~i~~l~~~-l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPPE-LSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSS-S-SSHGGH-GTTCTTSSEEEETSS
T ss_pred cceEEEccCC-CCcccCch-HhCCCCCCEEEecCC
Confidence 4666666664 35555543 555666666666655
No 93
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.94 E-value=0.0098 Score=53.70 Aligned_cols=104 Identities=15% Similarity=0.188 Sum_probs=63.7
Q ss_pred CCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCcccc---CCch
Q 009534 325 TPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRH---VTWL 401 (532)
Q Consensus 325 L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~---l~~l 401 (532)
...+++++.+ +..++. ++.++.|.+|.+++- .+..+...... .+++|+.|.+.+|++.. +-.+
T Consensus 44 ~d~iDLtdNd-l~~l~~--lp~l~rL~tLll~nN-rIt~I~p~L~~----------~~p~l~~L~LtnNsi~~l~dl~pL 109 (233)
T KOG1644|consen 44 FDAIDLTDND-LRKLDN--LPHLPRLHTLLLNNN-RITRIDPDLDT----------FLPNLKTLILTNNSIQELGDLDPL 109 (233)
T ss_pred cceecccccc-hhhccc--CCCccccceEEecCC-cceeeccchhh----------hccccceEEecCcchhhhhhcchh
Confidence 5566776643 444443 677778888888763 56656555544 57888888888876655 3446
Q ss_pred hcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeecccc
Q 009534 402 ILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGL 452 (532)
Q Consensus 402 ~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 452 (532)
..+|.|+.|.+-+.+--+.-. .. ..-+..+|+|+.|++.+-
T Consensus 110 a~~p~L~~Ltll~Npv~~k~~------YR----~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 110 ASCPKLEYLTLLGNPVEHKKN------YR----LYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ccCCccceeeecCCchhcccC------ce----eEEEEecCcceEeehhhh
Confidence 677888888776543211110 00 013455788888887653
No 94
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.91 E-value=0.013 Score=54.06 Aligned_cols=72 Identities=21% Similarity=0.287 Sum_probs=54.4
Q ss_pred CcccccHHHHHHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhccCCCCCC-CeEEEEEeCCCCCHHHHHHHH
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNF-DFVIWEVVSRDLQLGKIQESI 220 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F-~~~~wv~v~~~~~~~~l~~~i 220 (532)
.++||-++.++.+--...+++..-+-|-||+|+||||-+..+.+..+ +..+ +.+.-...|...++.-+-..|
T Consensus 27 ~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LL--G~~~ke~vLELNASdeRGIDvVRn~I 99 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELL--GDSYKEAVLELNASDERGIDVVRNKI 99 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHh--ChhhhhHhhhccCccccccHHHHHHH
Confidence 46799999999988888888999999999999999999999988885 3333 455555556555554444433
No 95
>PLN03025 replication factor C subunit; Provisional
Probab=95.89 E-value=0.026 Score=56.43 Aligned_cols=46 Identities=22% Similarity=0.295 Sum_probs=39.1
Q ss_pred CcccccHHHHHHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+++|.++-++.+..++..++.+-+-++|+.|+||||+|+.+.+..
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3578998888888888877766657799999999999999999886
No 96
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.88 E-value=0.0099 Score=67.27 Aligned_cols=46 Identities=24% Similarity=0.368 Sum_probs=40.6
Q ss_pred CcccccHHHHHHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+.++||+.++..+++.|......-+-++|.+|+|||++|+.+....
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999987666566699999999999999998887
No 97
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.87 E-value=0.001 Score=59.93 Aligned_cols=66 Identities=23% Similarity=0.446 Sum_probs=42.7
Q ss_pred ccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCC-cccc--CCchhcCCCcceeeecccccc
Q 009534 344 LASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGS-KLRH--VTWLILAPNLKLIQMYDCRCL 418 (532)
Q Consensus 344 l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c-~L~~--l~~l~~l~~L~~L~l~~c~~l 418 (532)
+..++.++.|.+.+|..+.+...+..+ +-+++|+.|+|++| .+++ +-++.+++||+.|.|.+.+..
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~---------~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLG---------GLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhc---------ccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhh
Confidence 445566666777777666655444333 24677777777777 7776 556777777777777665443
No 98
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.85 E-value=0.01 Score=66.19 Aligned_cols=46 Identities=24% Similarity=0.327 Sum_probs=40.1
Q ss_pred CcccccHHHHHHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+.++||+++++.+++.|......=+-++|.+|+|||++|+.+....
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999977655556699999999999999999886
No 99
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.80 E-value=0.031 Score=51.65 Aligned_cols=26 Identities=35% Similarity=0.586 Sum_probs=24.3
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++.+|||-|..|.||||+|+.++...
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~ 32 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQL 32 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 46899999999999999999999988
No 100
>PRK08181 transposase; Validated
Probab=95.78 E-value=0.49 Score=45.84 Aligned_cols=41 Identities=24% Similarity=0.259 Sum_probs=29.5
Q ss_pred HHhccCCceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEE
Q 009534 161 RCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEV 206 (532)
Q Consensus 161 ~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~ 206 (532)
+|+.. ..-+-++|..|+|||.||.++.+... .....+.|++
T Consensus 101 ~~~~~--~~nlll~Gp~GtGKTHLa~Aia~~a~---~~g~~v~f~~ 141 (269)
T PRK08181 101 SWLAK--GANLLLFGPPGGGKSHLAAAIGLALI---ENGWRVLFTR 141 (269)
T ss_pred HHHhc--CceEEEEecCCCcHHHHHHHHHHHHH---HcCCceeeee
Confidence 45543 34589999999999999999998773 2233456664
No 101
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.77 E-value=0.012 Score=64.85 Aligned_cols=46 Identities=39% Similarity=0.512 Sum_probs=37.6
Q ss_pred CcccccHHHHH---HHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLD---RVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~---~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++++|.+..+. .+.+.+..++..-+-++|++|+||||+|+.+++..
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~ 76 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT 76 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 35789887664 56666777777778899999999999999999876
No 102
>PRK12608 transcription termination factor Rho; Provisional
Probab=95.77 E-value=0.088 Score=52.95 Aligned_cols=69 Identities=16% Similarity=0.129 Sum_probs=49.9
Q ss_pred HHHHHHhcc-CCceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCe-EEEEEeCC-CCCHHHHHHHHHHHhcCC
Q 009534 157 DRVWRCLTE-EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDF-VIWEVVSR-DLQLGKIQESIAKKIGLC 227 (532)
Q Consensus 157 ~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~-~~wv~v~~-~~~~~~l~~~i~~~l~~~ 227 (532)
.++++.+.. ++-..+.|+|..|+|||||++.+.+... .++-+. ++|+.+.+ ...+.++++.+...+...
T Consensus 121 ~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~--~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvas 192 (380)
T PRK12608 121 MRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVA--ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYAS 192 (380)
T ss_pred HhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHH--hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEee
Confidence 347777654 3445679999999999999999988773 223344 46767654 557899999998877653
No 103
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.72 E-value=0.0045 Score=67.87 Aligned_cols=105 Identities=19% Similarity=0.251 Sum_probs=56.3
Q ss_pred CccCceeeEEeccchhHHHhhcCCcccccccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCc
Q 009534 293 LKHLNVLTITLHSFAALQRLLTYPSLQSIVSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGE 372 (532)
Q Consensus 293 L~~L~~L~i~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~ 372 (532)
||.|+.|.++......-. + ..+..+|+||..|++++++ +.++ +.+++++||+.|.+.+.+-...-. ..
T Consensus 147 LPsL~sL~i~~~~~~~~d-F---~~lc~sFpNL~sLDIS~Tn-I~nl--~GIS~LknLq~L~mrnLe~e~~~~--l~--- 214 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDD-F---SQLCASFPNLRSLDISGTN-ISNL--SGISRLKNLQVLSMRNLEFESYQD--LI--- 214 (699)
T ss_pred CcccceEEecCceecchh-H---HHHhhccCccceeecCCCC-ccCc--HHHhccccHHHHhccCCCCCchhh--HH---
Confidence 577777775432221111 1 1222346778888888754 6666 337777788877777643221100 00
Q ss_pred cccccccCCCCCccEEEEeCC-ccccC--C-----chhcCCCcceeeecc
Q 009534 373 VKRIRETHGFFSLHKVSIWGS-KLRHV--T-----WLILAPNLKLIQMYD 414 (532)
Q Consensus 373 ~~~~~~~~~l~~L~~L~l~~c-~L~~l--~-----~l~~l~~L~~L~l~~ 414 (532)
.+-+|.+|+.|+++.- ....- . .-..||+|+.|+.++
T Consensus 215 -----~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 215 -----DLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred -----HHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 1224778888888765 32221 0 122377777777764
No 104
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=0.25 Score=54.37 Aligned_cols=98 Identities=18% Similarity=0.330 Sum_probs=62.6
Q ss_pred CcccccHHHHHHHHHHhcc-------C--CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCHHHHH
Q 009534 147 PTVVGLQSTLDRVWRCLTE-------E--PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQLGKIQ 217 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~~~~l~ 217 (532)
..++|.++.++.+.+.+.. + .....-..|+.|||||.||+.+..... +.=+..+-+.+|..-....+.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lf---g~e~aliR~DMSEy~EkHsVS 567 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALF---GDEQALIRIDMSEYMEKHSVS 567 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhc---CCCccceeechHHHHHHHHHH
Confidence 4689999999999999853 1 356777799999999999999988873 222555656555533333322
Q ss_pred HHHHHHhcCCCCCCCCCCHHHHHHHHHHHhcCCcEEEe
Q 009534 218 ESIAKKIGLCNESWDSKSFDEKAQEIFKTMRNTKFLIS 255 (532)
Q Consensus 218 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlV 255 (532)
+ =++.++ ..-..++ -..|-+.++.+.|=+|
T Consensus 568 r----LIGaPP---GYVGyee-GG~LTEaVRr~PySVi 597 (786)
T COG0542 568 R----LIGAPP---GYVGYEE-GGQLTEAVRRKPYSVI 597 (786)
T ss_pred H----HhCCCC---CCceecc-ccchhHhhhcCCCeEE
Confidence 2 233332 1111122 2346677788888666
No 105
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=95.72 E-value=0.012 Score=60.61 Aligned_cols=46 Identities=30% Similarity=0.406 Sum_probs=38.1
Q ss_pred CcccccHHHHHHHHHHhcc-------------CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTE-------------EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++++|+++.++++.+.+.. ...+-|-++|++|+|||++|+++++..
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~ 189 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET 189 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh
Confidence 4678999999999887632 135568899999999999999999987
No 106
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=95.71 E-value=0.013 Score=59.80 Aligned_cols=46 Identities=28% Similarity=0.403 Sum_probs=38.2
Q ss_pred CcccccHHHHHHHHHHhcc-------------CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTE-------------EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++++|+++.++++.+.+.. ...+-+-++|+.|+|||++|+++++..
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l 180 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET 180 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC
Confidence 4679999999999887642 124558899999999999999999987
No 107
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.70 E-value=0.013 Score=50.91 Aligned_cols=36 Identities=25% Similarity=0.322 Sum_probs=27.3
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEE
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWE 205 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv 205 (532)
..-|.|.||+|+||||+++.+.+.. +. ..|...-++
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L-~~-~g~kvgGf~ 40 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL-RE-KGYKVGGFI 40 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH-Hh-cCceeeeEE
Confidence 3468999999999999999999988 33 336544333
No 108
>PRK04195 replication factor C large subunit; Provisional
Probab=95.67 E-value=0.0095 Score=63.18 Aligned_cols=46 Identities=30% Similarity=0.514 Sum_probs=40.0
Q ss_pred CcccccHHHHHHHHHHhcc---C-CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTE---E-PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~---~-~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++++|.++.++.+.+|+.. + ..+.+-|+|+.|+||||+|+.+.++.
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999864 2 26789999999999999999999987
No 109
>PF13173 AAA_14: AAA domain
Probab=95.64 E-value=0.016 Score=49.50 Aligned_cols=38 Identities=32% Similarity=0.392 Sum_probs=30.4
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCC
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSR 209 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~ 209 (532)
.+++.|.|+.|+||||+++.++.+. . ..+..+++.+..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~-~---~~~~~~yi~~~~ 39 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDL-L---PPENILYINFDD 39 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh-c---ccccceeeccCC
Confidence 4789999999999999999999887 2 345667776554
No 110
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=95.63 E-value=0.067 Score=60.20 Aligned_cols=46 Identities=30% Similarity=0.378 Sum_probs=38.1
Q ss_pred CcccccHHHHHHHHHHhcc------CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTE------EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+++|.++.++.|.+++.. .+..++.++|+.|+|||++|+.+.+..
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999887642 134578999999999999999999987
No 111
>PHA00729 NTP-binding motif containing protein
Probab=95.60 E-value=0.018 Score=53.73 Aligned_cols=35 Identities=17% Similarity=0.299 Sum_probs=29.0
Q ss_pred HHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 158 RVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 158 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++++.+..++...|.|.|.+|+||||||..+.+..
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45566666667789999999999999999998875
No 112
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.57 E-value=0.03 Score=48.74 Aligned_cols=75 Identities=20% Similarity=0.357 Sum_probs=46.9
Q ss_pred EEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCC-----CCCCCHHHHHHHHH
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQLGKIQESIAKKIGLCNES-----WDSKSFDEKAQEIF 244 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~-----~~~~~~~~~~~~l~ 244 (532)
+|+|-|.+|.||||+|+.+.++.. +.++ +...+.+++++..+.+... ..+...+...+.-.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g-----l~~v---------saG~iFR~~A~e~gmsl~ef~~~AE~~p~iD~~iD~rq 67 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG-----LKLV---------SAGTIFREMARERGMSLEEFSRYAEEDPEIDKEIDRRQ 67 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC-----Ccee---------eccHHHHHHHHHcCCCHHHHHHHHhcCchhhHHHHHHH
Confidence 689999999999999999999872 2211 3456788888877664311 02333344444443
Q ss_pred HHhcCCcEEEe--hhh
Q 009534 245 KTMRNTKFLIS--NLK 258 (532)
Q Consensus 245 ~~L~~kr~LlV--~lA 258 (532)
..+..+.-++| +||
T Consensus 68 ~e~a~~~nvVlegrLA 83 (179)
T COG1102 68 KELAKEGNVVLEGRLA 83 (179)
T ss_pred HHHHHcCCeEEhhhhH
Confidence 44444555666 565
No 113
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.57 E-value=0.019 Score=54.42 Aligned_cols=27 Identities=33% Similarity=0.480 Sum_probs=24.8
Q ss_pred CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 166 EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 166 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++..+++|.|..|.|||||++.+....
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998877
No 114
>PRK08233 hypothetical protein; Provisional
Probab=95.52 E-value=0.013 Score=53.22 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=23.0
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..+|+|.|..|+||||+|+.+....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4789999999999999999998876
No 115
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=95.52 E-value=0.0011 Score=65.32 Aligned_cols=123 Identities=21% Similarity=0.281 Sum_probs=68.4
Q ss_pred CCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCC-ccccCCc--h
Q 009534 325 TPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGS-KLRHVTW--L 401 (532)
Q Consensus 325 L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c-~L~~l~~--l 401 (532)
...|.|.. ++++++|...|+.+++|++|+++. .+++.+..+... ++++|..|-+.++ +++.+|. +
T Consensus 69 tveirLdq-N~I~~iP~~aF~~l~~LRrLdLS~-N~Is~I~p~AF~----------GL~~l~~Lvlyg~NkI~~l~k~~F 136 (498)
T KOG4237|consen 69 TVEIRLDQ-NQISSIPPGAFKTLHRLRRLDLSK-NNISFIAPDAFK----------GLASLLSLVLYGNNKITDLPKGAF 136 (498)
T ss_pred ceEEEecc-CCcccCChhhccchhhhceecccc-cchhhcChHhhh----------hhHhhhHHHhhcCCchhhhhhhHh
Confidence 34455555 457777777777777777777776 356656554433 5667766666664 7777664 5
Q ss_pred hcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccccCC-CCcCCCCccEEee
Q 009534 402 ILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIYP-RALPFPHLKELHV 473 (532)
Q Consensus 402 ~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~-~~~~~p~L~~L~i 473 (532)
..|..|+.|.+.- ..+..+.. +.+..+++|..|.+.+ ..++.++. .+..+.+++.+.+
T Consensus 137 ~gL~slqrLllNa-n~i~Cir~------------~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhl 195 (498)
T KOG4237|consen 137 GGLSSLQRLLLNA-NHINCIRQ------------DALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHL 195 (498)
T ss_pred hhHHHHHHHhcCh-hhhcchhH------------HHHHHhhhcchhcccc-hhhhhhccccccchhccchHhh
Confidence 5566666655532 22333332 2444555565555555 34455554 2333444444443
No 116
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.50 E-value=0.011 Score=49.99 Aligned_cols=21 Identities=33% Similarity=0.716 Sum_probs=19.6
Q ss_pred EEEecCCCCcHHHHHHHHHHh
Q 009534 171 VGLYGMGGVGKTTLLTQINNS 191 (532)
Q Consensus 171 i~I~G~gGiGKTtLa~~v~~~ 191 (532)
|.|.|..|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999887
No 117
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.47 E-value=0.017 Score=65.49 Aligned_cols=46 Identities=24% Similarity=0.379 Sum_probs=40.0
Q ss_pred CcccccHHHHHHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+.++||++++.++++.|......-+-++|.+|+|||++|+.+..+.
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i 218 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRI 218 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 4589999999999999977655556689999999999999998876
No 118
>PRK07667 uridine kinase; Provisional
Probab=95.47 E-value=0.02 Score=52.70 Aligned_cols=37 Identities=22% Similarity=0.426 Sum_probs=29.6
Q ss_pred HHHHHHHhcc--CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 156 LDRVWRCLTE--EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 156 ~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+.+.+.+.. ++..+|+|-|..|.||||+|+.+....
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3455555543 356899999999999999999999877
No 119
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.47 E-value=0.043 Score=57.01 Aligned_cols=44 Identities=14% Similarity=0.144 Sum_probs=38.1
Q ss_pred CcccccHHHHHHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..++|+++.++.+...+..+ .-+-+.|++|+|||++|+.+....
T Consensus 20 ~~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred hhccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHh
Confidence 57899999999999988764 446689999999999999999876
No 120
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.46 E-value=0.014 Score=54.50 Aligned_cols=27 Identities=33% Similarity=0.498 Sum_probs=24.4
Q ss_pred CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 166 EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 166 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+..+|+|.|..|+||||||+.+....
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999999876
No 121
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.46 E-value=0.013 Score=53.52 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=23.4
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..+|+|-||-|+||||||+.+.++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh
Confidence 4689999999999999999999988
No 122
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.46 E-value=0.02 Score=60.12 Aligned_cols=46 Identities=24% Similarity=0.316 Sum_probs=39.3
Q ss_pred CcccccHHHHHHHHHHhccCCc-eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPV-GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++++|.+.-++.+.+.+..++. +.+-++|+.|+||||+|+.+.+..
T Consensus 14 ~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l 60 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSL 60 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999888888888877765 567899999999999999998876
No 123
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.43 E-value=0.012 Score=54.15 Aligned_cols=23 Identities=39% Similarity=0.683 Sum_probs=22.0
Q ss_pred EEEEecCCCCcHHHHHHHHHHhc
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
||+|.|.+|+||||+|+.+....
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L 23 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQIL 23 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999999988
No 124
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.40 E-value=0.021 Score=55.32 Aligned_cols=45 Identities=24% Similarity=0.278 Sum_probs=32.6
Q ss_pred cccccHHHHHHHHHH---hcc------------CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 148 TVVGLQSTLDRVWRC---LTE------------EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 148 ~~vGr~~~~~~l~~~---L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.++|.+..++.|.+. +.- +...-+-++|++|+||||+|+.+++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 478888776665543 211 134557789999999999999998765
No 125
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.39 E-value=0.02 Score=51.84 Aligned_cols=36 Identities=22% Similarity=0.364 Sum_probs=29.3
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEE
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWE 205 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv 205 (532)
+..+|.+.|+.|+||||+|+.++... ...+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l---~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERL---KLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEE
Confidence 45689999999999999999999988 2455556555
No 126
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.38 E-value=0.084 Score=44.86 Aligned_cols=39 Identities=23% Similarity=0.137 Sum_probs=28.6
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCC
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSR 209 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~ 209 (532)
...+.|+|+.|+||||+++.+..... .....++++..+.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~---~~~~~~~~~~~~~ 40 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELG---PPGGGVIYIDGED 40 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccC---CCCCCEEEECCEE
Confidence 35788999999999999999998872 2223455565443
No 127
>PRK10536 hypothetical protein; Provisional
Probab=95.37 E-value=0.091 Score=50.05 Aligned_cols=44 Identities=11% Similarity=0.175 Sum_probs=37.1
Q ss_pred CcccccHHHHHHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..+.+++......+.++.+. .++.+.|..|+|||+||.++..+.
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~ 98 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEA 98 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHH
Confidence 34678888888899988763 499999999999999999988864
No 128
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.34 E-value=0.026 Score=57.58 Aligned_cols=46 Identities=24% Similarity=0.286 Sum_probs=40.2
Q ss_pred CcccccHHHHHHHHHHhccCC-ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEP-VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+++|.+..++.+.+.+..++ .+.+-++|+.|+||||+|+.+....
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l 62 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSL 62 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHh
Confidence 468999999999999988765 4567899999999999999998876
No 129
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=95.34 E-value=0.024 Score=53.93 Aligned_cols=46 Identities=28% Similarity=0.415 Sum_probs=36.5
Q ss_pred CcccccHHHHHHHHHHhc-----cCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLT-----EEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+++|.++-++.+-=.+. .+.+--+-++|++|.||||||.-+.+..
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em 76 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL 76 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh
Confidence 357998877776655553 2356678899999999999999999988
No 130
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.31 E-value=0.082 Score=51.82 Aligned_cols=85 Identities=20% Similarity=0.258 Sum_probs=46.9
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCC-CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHH
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDL-QLGKIQESIAKKIGLCNESWDSKSFDEKAQEIFK 245 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~-~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 245 (532)
+.+++.|+|+.|+||||++..+.... ..+..-..+..|+..... ....-+......++.+.. ...+..+....+ +
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~-~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~--~~~~~~~l~~~l-~ 268 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF-VLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK--VARDPKELRKAL-D 268 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee--ccCCHHHHHHHH-H
Confidence 45799999999999999999988776 222111345556543321 122222333333443321 223444444333 3
Q ss_pred HhcCCcEEEe
Q 009534 246 TMRNTKFLIS 255 (532)
Q Consensus 246 ~L~~kr~LlV 255 (532)
.+.+..++||
T Consensus 269 ~~~~~d~vli 278 (282)
T TIGR03499 269 RLRDKDLILI 278 (282)
T ss_pred HccCCCEEEE
Confidence 4566777776
No 131
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.28 E-value=0.13 Score=50.31 Aligned_cols=27 Identities=22% Similarity=0.236 Sum_probs=23.1
Q ss_pred CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 166 EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 166 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..+.+|+|.|..|+||||+|+.+..-.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999998876554
No 132
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.28 E-value=0.083 Score=48.69 Aligned_cols=85 Identities=18% Similarity=0.183 Sum_probs=51.4
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCC-CCCHHHHHHHHHHHhcCCCCCC-CCCCHHHHHHHHHH
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSR-DLQLGKIQESIAKKIGLCNESW-DSKSFDEKAQEIFK 245 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~-~~~~~~l~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~ 245 (532)
++++.++|+.|+||||.+-++.... ..+ -..+..++... .....+=++..++.++.+.... ...+..+......+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~-~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL-KLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALE 77 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH-HHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH-hhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHH
Confidence 4789999999999999998888777 322 34566676543 2244555667777777642111 23344444443333
Q ss_pred HhcC--CcEEEe
Q 009534 246 TMRN--TKFLIS 255 (532)
Q Consensus 246 ~L~~--kr~LlV 255 (532)
..+. ..+++|
T Consensus 78 ~~~~~~~D~vlI 89 (196)
T PF00448_consen 78 KFRKKGYDLVLI 89 (196)
T ss_dssp HHHHTTSSEEEE
T ss_pred HHhhcCCCEEEE
Confidence 3433 457887
No 133
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.27 E-value=0.024 Score=56.69 Aligned_cols=46 Identities=13% Similarity=0.080 Sum_probs=39.9
Q ss_pred CcccccHHHHHHHHHHhccCC-ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEP-VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++++|.++..+.+..++..++ ..++-++|+.|+||||+|+.+++..
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 467999999999999998765 4677779999999999999998876
No 134
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.26 E-value=0.068 Score=54.10 Aligned_cols=85 Identities=18% Similarity=0.172 Sum_probs=50.1
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCC-CCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHH
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSR-DLQLGKIQESIAKKIGLCNESWDSKSFDEKAQEIFK 245 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~-~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 245 (532)
+-.++.++|+.|+||||++.++..... .+.....+..++... .....+-++...+.++.+.. ...+..+.. ....
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~-~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~--~~~~~~~l~-~~l~ 211 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCV-MRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH--AVKDGGDLQ-LALA 211 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH-HhcCCCeEEEEecccccccHHHHHHHHHHHcCCceE--ecCCcccHH-HHHH
Confidence 357999999999999999999988762 111223556665332 12334444555555555332 122222233 2334
Q ss_pred HhcCCcEEEe
Q 009534 246 TMRNTKFLIS 255 (532)
Q Consensus 246 ~L~~kr~LlV 255 (532)
.+.++.+++|
T Consensus 212 ~l~~~DlVLI 221 (374)
T PRK14722 212 ELRNKHMVLI 221 (374)
T ss_pred HhcCCCEEEE
Confidence 5678899988
No 135
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.23 E-value=0.019 Score=60.78 Aligned_cols=46 Identities=26% Similarity=0.266 Sum_probs=39.8
Q ss_pred CcccccHHHHHHHHHHhccCCc-eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPV-GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++++|.+.-++.+.+++..++. +.+-++|+.|+||||+|+.+....
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l 60 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAV 60 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999887764 566999999999999999998877
No 136
>PRK06762 hypothetical protein; Provisional
Probab=95.20 E-value=0.019 Score=51.38 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=22.7
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.++|.|.|+.|+||||+|+.+....
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998876
No 137
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.16 E-value=0.02 Score=53.45 Aligned_cols=26 Identities=35% Similarity=0.457 Sum_probs=23.8
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
...+|+|.|+.|+||||||+.+....
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999999876
No 138
>PTZ00301 uridine kinase; Provisional
Probab=95.16 E-value=0.02 Score=53.39 Aligned_cols=25 Identities=32% Similarity=0.631 Sum_probs=22.8
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..+|+|-|..|.||||+|+.+....
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 5789999999999999999998776
No 139
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.16 E-value=0.04 Score=46.25 Aligned_cols=47 Identities=15% Similarity=0.247 Sum_probs=38.0
Q ss_pred CcccccHHHHHHHHHHhcc-------CCceEEEEecCCCCcHHHHHHHHHHhcc
Q 009534 147 PTVVGLQSTLDRVWRCLTE-------EPVGIVGLYGMGGVGKTTLLTQINNSFL 193 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 193 (532)
..++|..-..+.|++.+.+ +++-|++.+|..|+|||.+++.+.+...
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly 78 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLY 78 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHH
Confidence 4678888777777777743 3788999999999999999988877743
No 140
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.14 E-value=0.0013 Score=61.90 Aligned_cols=84 Identities=20% Similarity=0.275 Sum_probs=53.6
Q ss_pred cccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCCchhcCCCcceeeecccccccccccccc
Q 009534 347 LRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTWLILAPNLKLIQMYDCRCLEEIISLEK 426 (532)
Q Consensus 347 l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~l~~l~~L~~L~l~~c~~l~~i~~~~~ 426 (532)
+.+.+.|+.++| .|.++.+ . ..++.|+.|.|+-|+++.+.++..+.+|++|+|... .+.++..
T Consensus 18 l~~vkKLNcwg~-~L~DIsi--c----------~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN-~I~sldE--- 80 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDISI--C----------EKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKN-CIESLDE--- 80 (388)
T ss_pred HHHhhhhcccCC-CccHHHH--H----------HhcccceeEEeeccccccchhHHHHHHHHHHHHHhc-ccccHHH---
Confidence 445666677776 3544433 1 257788888888778888777888888888888642 2333322
Q ss_pred ccCcCcccCcccccccccceeeccccccc
Q 009534 427 LGEVPSEEMQNLIPFARLERLSLGGLENL 455 (532)
Q Consensus 427 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~L 455 (532)
-..+.++|+|+.|-|...|.-
T Consensus 81 --------L~YLknlpsLr~LWL~ENPCc 101 (388)
T KOG2123|consen 81 --------LEYLKNLPSLRTLWLDENPCC 101 (388)
T ss_pred --------HHHHhcCchhhhHhhccCCcc
Confidence 124666777777777766543
No 141
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.11 E-value=0.02 Score=42.89 Aligned_cols=23 Identities=26% Similarity=0.569 Sum_probs=20.7
Q ss_pred EEEEecCCCCcHHHHHHHHHHhc
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+|.|.|..|+||||+++.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998873
No 142
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.07 E-value=0.029 Score=58.33 Aligned_cols=46 Identities=20% Similarity=0.307 Sum_probs=40.4
Q ss_pred CcccccHHHHHHHHHHhccCCc-eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPV-GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+++|.+..+..+..++..+++ +.+-++|+.|+||||+|+.+....
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~L 64 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRL 64 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4589999999999999988775 467899999999999999998877
No 143
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.05 E-value=0.15 Score=52.87 Aligned_cols=86 Identities=22% Similarity=0.215 Sum_probs=51.4
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCC-CCCHHHHHHHHHHHhcCCCCCC-CCCCHHHHHHHHH
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSR-DLQLGKIQESIAKKIGLCNESW-DSKSFDEKAQEIF 244 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~-~~~~~~l~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 244 (532)
.+.+|.++|..|+||||.+..+.... .. ..+ .++-|+... .....+-++.++..++.+.... ...+.........
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L-~~-~g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYF-KK-KGL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-HH-cCC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 46899999999999999999998877 32 223 344454322 1123444556666665543211 1234444444444
Q ss_pred HHhcCCcEEEe
Q 009534 245 KTMRNTKFLIS 255 (532)
Q Consensus 245 ~~L~~kr~LlV 255 (532)
+.+.+..++||
T Consensus 171 ~~~~~~DvVII 181 (437)
T PRK00771 171 EKFKKADVIIV 181 (437)
T ss_pred HHhhcCCEEEE
Confidence 55566688888
No 144
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.04 E-value=0.13 Score=48.34 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=21.4
Q ss_pred EEEEecCCCCcHHHHHHHHHHhc
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+|+|.|..|+||||+|+.+....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999877
No 145
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.00 E-value=0.24 Score=50.53 Aligned_cols=104 Identities=18% Similarity=0.221 Sum_probs=71.3
Q ss_pred CCcccccHHHHHHHHHHhcc----CCceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCHHHHHHHHH
Q 009534 146 PPTVVGLQSTLDRVWRCLTE----EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQLGKIQESIA 221 (532)
Q Consensus 146 ~~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~ 221 (532)
+..++||+.+.+.+.+++.. ...+-+=|.|..|.|||.+...++.+....... -.++++....-.....+...|.
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~-~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKS-PVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhccc-ceeEEEeeccccchHHHHHHHH
Confidence 45789999999999999864 367778889999999999999999988211111 1345665555456778888888
Q ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHhcCCcE
Q 009534 222 KKIGLCNESWDSKSFDEKAQEIFKTMRNTKF 252 (532)
Q Consensus 222 ~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~ 252 (532)
..+-.... ......+....+.++.++.++
T Consensus 228 ~~~~q~~~--s~~~~~~~~~~~~~h~~q~k~ 256 (529)
T KOG2227|consen 228 SSLLQDLV--SPGTGMQHLEKFEKHTKQSKF 256 (529)
T ss_pred HHHHHHhc--CCchhHHHHHHHHHHHhcccc
Confidence 87722111 122225566777777776663
No 146
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.97 E-value=0.038 Score=54.34 Aligned_cols=46 Identities=28% Similarity=0.415 Sum_probs=37.8
Q ss_pred CcccccHHHHHHHHHHhcc-------------CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTE-------------EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.++-|.++.+++|.+.+.- +.++=|-.+|++|+|||-||++|.++-
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T 209 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT 209 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 3467889999998888642 246667889999999999999999987
No 147
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=94.95 E-value=0.046 Score=51.73 Aligned_cols=43 Identities=21% Similarity=0.303 Sum_probs=30.1
Q ss_pred cccHHHH-HHHHHHhcc-CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 150 VGLQSTL-DRVWRCLTE-EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 150 vGr~~~~-~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.|.++.. ..+.++... .....+.|+|..|+|||+||+.+++..
T Consensus 22 ~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~ 66 (227)
T PRK08903 22 AGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADA 66 (227)
T ss_pred cCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3554444 333333332 345678899999999999999999986
No 148
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.94 E-value=0.024 Score=51.80 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=23.4
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+..+|.|+|+.|+||||+|+.+....
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998765
No 149
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.93 E-value=0.081 Score=53.92 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=37.7
Q ss_pred CcccccHHHHHHHHHHhccC--------------CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEE--------------PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~--------------~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..++|.++.++.+.-.+... ..+-|-++|+.|+|||++|+.+....
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l 71 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA 71 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999998887766531 24678899999999999999998887
No 150
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.91 E-value=0.03 Score=62.12 Aligned_cols=46 Identities=24% Similarity=0.333 Sum_probs=38.8
Q ss_pred CcccccHHHHHHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+.++||++++..+++.|......-+-++|..|+|||++|+.+....
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i 231 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999877543444589999999999999998875
No 151
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=94.81 E-value=0.02 Score=59.10 Aligned_cols=128 Identities=21% Similarity=0.257 Sum_probs=85.1
Q ss_pred ccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCC-ccccCCc
Q 009534 322 VSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGS-KLRHVTW 400 (532)
Q Consensus 322 l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c-~L~~l~~ 400 (532)
+++|+.|++++++ +..+|.. ...+++|+.|.+++. .+..+|.... ...+|++|.+.++ .+..+..
T Consensus 162 l~~L~~L~l~~N~-l~~l~~~-~~~~~~L~~L~ls~N-~i~~l~~~~~-----------~~~~L~~l~~~~N~~~~~~~~ 227 (394)
T COG4886 162 LPNLKNLDLSFND-LSDLPKL-LSNLSNLNNLDLSGN-KISDLPPEIE-----------LLSALEELDLSNNSIIELLSS 227 (394)
T ss_pred cccccccccCCch-hhhhhhh-hhhhhhhhheeccCC-ccccCchhhh-----------hhhhhhhhhhcCCcceecchh
Confidence 4668888888865 7777653 336678888888874 5666665321 1445888888887 4554555
Q ss_pred hhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccccCCCCcCCCCccEEeecCCCCC
Q 009534 401 LILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIYPRALPFPHLKELHVTLCPKL 479 (532)
Q Consensus 401 l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L 479 (532)
+..+.++..|.+. ...+..++. .+..++.|+.|++.++ .+.+++. .+.+.+|+.|++.+-...
T Consensus 228 ~~~~~~l~~l~l~-~n~~~~~~~-------------~~~~l~~l~~L~~s~n-~i~~i~~-~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 228 LSNLKNLSGLELS-NNKLEDLPE-------------SIGNLSNLETLDLSNN-QISSISS-LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred hhhcccccccccC-Cceeeeccc-------------hhccccccceeccccc-ccccccc-ccccCccCEEeccCcccc
Confidence 7777777777753 344444433 5666777888888774 4666665 667778888888774333
No 152
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.81 E-value=0.0041 Score=56.06 Aligned_cols=66 Identities=21% Similarity=0.293 Sum_probs=50.5
Q ss_pred CCCCccEEEEeCC-cccc--CCchh-cCCCcceeeeccccccccccccccccCcCcccCcccccccccceeecccccccc
Q 009534 381 GFFSLHKVSIWGS-KLRH--VTWLI-LAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLR 456 (532)
Q Consensus 381 ~l~~L~~L~l~~c-~L~~--l~~l~-~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~ 456 (532)
.++.++.|.+.+| .+.. +..++ -.|+|+.|+|++|+.+++-.- ..+..|++|+.|.|.++|...
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL------------~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL------------ACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH------------HHHHHhhhhHHHHhcCchhhh
Confidence 5778888889998 7776 33333 478999999999998877644 367788999999999887665
Q ss_pred cc
Q 009534 457 SI 458 (532)
Q Consensus 457 ~i 458 (532)
..
T Consensus 191 ~~ 192 (221)
T KOG3864|consen 191 NL 192 (221)
T ss_pred ch
Confidence 44
No 153
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.81 E-value=0.04 Score=58.70 Aligned_cols=46 Identities=30% Similarity=0.377 Sum_probs=39.5
Q ss_pred CcccccHHHHHHHHHHhccCCc-eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPV-GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++++|.+..++.+...+..++. +.+-++|+.|+||||+|+.+....
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L 62 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCL 62 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999987654 557789999999999999998765
No 154
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.78 E-value=0.18 Score=47.42 Aligned_cols=89 Identities=24% Similarity=0.273 Sum_probs=50.3
Q ss_pred cccc-HHHHHHHHHHhcc-C--CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 009534 149 VVGL-QSTLDRVWRCLTE-E--PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQLGKIQESIAKKI 224 (532)
Q Consensus 149 ~vGr-~~~~~~l~~~L~~-~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l 224 (532)
++|- ++..-...+.+.+ . ....+-|+|..|+|||.|.+++++... ....=..++++ +..++...+...+
T Consensus 11 v~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~-~~~~~~~v~y~------~~~~f~~~~~~~~ 83 (219)
T PF00308_consen 11 VVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQ-KQHPGKRVVYL------SAEEFIREFADAL 83 (219)
T ss_dssp --TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHH-HHCTTS-EEEE------EHHHHHHHHHHHH
T ss_pred CcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHH-hccccccceee------cHHHHHHHHHHHH
Confidence 4564 3333344444433 2 345678999999999999999999873 11111245566 4455666655555
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhcCCcEEEe
Q 009534 225 GLCNESWDSKSFDEKAQEIFKTMRNTKFLIS 255 (532)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlV 255 (532)
... ....+++.+++-.+|++
T Consensus 84 ~~~-----------~~~~~~~~~~~~DlL~i 103 (219)
T PF00308_consen 84 RDG-----------EIEEFKDRLRSADLLII 103 (219)
T ss_dssp HTT-----------SHHHHHHHHCTSSEEEE
T ss_pred Hcc-----------cchhhhhhhhcCCEEEE
Confidence 331 12345555666666666
No 155
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=94.77 E-value=0.31 Score=54.64 Aligned_cols=47 Identities=32% Similarity=0.347 Sum_probs=39.8
Q ss_pred CCcccccHHHHHHHHHHhcc------CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 146 PPTVVGLQSTLDRVWRCLTE------EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 146 ~~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+.+.+|.++-++.|++++.. ....++.++|+.|+||||+|+.+....
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l 373 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT 373 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 35679999999999998852 245689999999999999999999876
No 156
>PRK08084 DNA replication initiation factor; Provisional
Probab=94.77 E-value=0.088 Score=50.11 Aligned_cols=58 Identities=21% Similarity=0.241 Sum_probs=38.5
Q ss_pred ccccH-HHHHHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCC
Q 009534 149 VVGLQ-STLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSR 209 (532)
Q Consensus 149 ~vGr~-~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~ 209 (532)
++|.+ ..+..+.++........+-|+|+.|+|||+|++.+++... ..-..+.++++..
T Consensus 25 ~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~---~~~~~v~y~~~~~ 83 (235)
T PRK08084 25 YPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELS---QRGRAVGYVPLDK 83 (235)
T ss_pred ccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEEHHH
Confidence 34633 3344444444444556889999999999999999999872 2234566776543
No 157
>PRK03839 putative kinase; Provisional
Probab=94.72 E-value=0.027 Score=51.14 Aligned_cols=23 Identities=35% Similarity=0.601 Sum_probs=21.4
Q ss_pred EEEEecCCCCcHHHHHHHHHHhc
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.|.|.|+.|+||||+|+.+.++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999987
No 158
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.69 E-value=0.043 Score=59.05 Aligned_cols=46 Identities=22% Similarity=0.242 Sum_probs=40.2
Q ss_pred CcccccHHHHHHHHHHhccCC-ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEP-VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++++|.+..++.+.+++..++ .+.+-++|+.|+||||+|+.+....
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~L 61 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCL 61 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999998776 4677899999999999999998776
No 159
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.69 E-value=0.029 Score=48.59 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.9
Q ss_pred EEEEecCCCCcHHHHHHHHHHhc
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+|-+.|+.|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 57789999999999999998776
No 160
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=94.63 E-value=0.031 Score=47.48 Aligned_cols=22 Identities=36% Similarity=0.458 Sum_probs=20.4
Q ss_pred EEEecCCCCcHHHHHHHHHHhc
Q 009534 171 VGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 171 i~I~G~gGiGKTtLa~~v~~~~ 192 (532)
|-|+|+.|+||||+|+.+.+..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 4689999999999999999987
No 161
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=94.63 E-value=0.05 Score=55.88 Aligned_cols=46 Identities=26% Similarity=0.359 Sum_probs=37.4
Q ss_pred CcccccHHHHHHHHHHhcc-------------CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTE-------------EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.++.|.+..++++.+.+.. ...+-+-++|+.|+|||++|+++.+..
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l 203 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT 203 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc
Confidence 4678999888888876631 135678899999999999999999876
No 162
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=94.61 E-value=0.072 Score=49.62 Aligned_cols=49 Identities=18% Similarity=0.200 Sum_probs=37.9
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCHHHHHHH
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQLGKIQES 219 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~ 219 (532)
.-.++-|+|.+|+|||+++..+..... ..-+.++|++... ++...+.+.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~---~~g~~v~yi~~e~-~~~~rl~~~ 59 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAA---RQGKKVVYIDTEG-LSPERFKQI 59 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEECCC-CCHHHHHHH
Confidence 468999999999999999999877662 3457899999865 666555443
No 163
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.60 E-value=0.047 Score=51.30 Aligned_cols=46 Identities=24% Similarity=0.363 Sum_probs=38.2
Q ss_pred CcccccHHHHHH---HHHHhccC------CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDR---VWRCLTEE------PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~---l~~~L~~~------~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+++||.++.+.+ |++.|.+. .++-|-.+|+.|.|||-+|+++.+..
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~ 175 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA 175 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc
Confidence 567998877665 66777653 58889999999999999999999987
No 164
>PRK05439 pantothenate kinase; Provisional
Probab=94.60 E-value=0.32 Score=48.05 Aligned_cols=83 Identities=13% Similarity=0.005 Sum_probs=44.7
Q ss_pred CCceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHH
Q 009534 166 EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQLGKIQESIAKKIGLCNESWDSKSFDEKAQEIFK 245 (532)
Q Consensus 166 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 245 (532)
+...+|+|.|..|+||||+|+.+.... .....-..+.-++...-+...+.+.. ..+.........-+.+.+...|..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l-~~~~~~~~v~vi~~DdFy~~~~~l~~--~~l~~~kg~Pes~D~~~l~~~L~~ 160 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALL-SRWPEHPKVELVTTDGFLYPNAVLEE--RGLMKRKGFPESYDMRALLRFLSD 160 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH-HhhCCCCceEEEeccccccCHHHHhh--hhccccCCCcccccHHHHHHHHHH
Confidence 367899999999999999999988765 21111123344444443322222211 111111111144566666666666
Q ss_pred HhcCCc
Q 009534 246 TMRNTK 251 (532)
Q Consensus 246 ~L~~kr 251 (532)
...++.
T Consensus 161 Lk~G~~ 166 (311)
T PRK05439 161 VKSGKP 166 (311)
T ss_pred HHcCCC
Confidence 555554
No 165
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.59 E-value=0.3 Score=56.35 Aligned_cols=68 Identities=22% Similarity=0.217 Sum_probs=49.5
Q ss_pred CcccccHHHHHHHHHHhcc-CCceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeC-CCCCHHHHHHHHHHHh
Q 009534 147 PTVVGLQSTLDRVWRCLTE-EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVS-RDLQLGKIQESIAKKI 224 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~-~~~~~~~l~~~i~~~l 224 (532)
+.+|-|..-.+ .|.. ...+++.|.|++|.||||++....... . .++|+++. .+.+...+...++..+
T Consensus 14 ~~~~~R~rl~~----~l~~~~~~~~~~v~apaG~GKTtl~~~~~~~~----~---~~~w~~l~~~d~~~~~f~~~l~~~l 82 (903)
T PRK04841 14 HNTVVRERLLA----KLSGANNYRLVLVTSPAGYGKTTLISQWAAGK----N---NLGWYSLDESDNQPERFASYLIAAL 82 (903)
T ss_pred cccCcchHHHH----HHhcccCCCeEEEECCCCCCHHHHHHHHHHhC----C---CeEEEecCcccCCHHHHHHHHHHHH
Confidence 45677764443 3333 357899999999999999999987543 2 68999986 4557677777777777
Q ss_pred c
Q 009534 225 G 225 (532)
Q Consensus 225 ~ 225 (532)
.
T Consensus 83 ~ 83 (903)
T PRK04841 83 Q 83 (903)
T ss_pred H
Confidence 4
No 166
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.59 E-value=0.048 Score=56.33 Aligned_cols=46 Identities=20% Similarity=0.191 Sum_probs=39.4
Q ss_pred CcccccHHHHHHHHHHhccCCc-eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPV-GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+++|.+.-++.+.+++..+++ +.+-++|+.|+||||+|+.+....
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l 62 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAV 62 (397)
T ss_pred hhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999989999998887765 457889999999999999998877
No 167
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=94.58 E-value=0.046 Score=58.47 Aligned_cols=46 Identities=13% Similarity=0.224 Sum_probs=39.7
Q ss_pred CcccccHHHHHHHHHHhccCC-ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEP-VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+++|.+..++.+.+++..++ .+.+-++|+.|+||||+|+.+....
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L 62 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAI 62 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 467999999999999987764 4578899999999999999998776
No 168
>PRK08727 hypothetical protein; Validated
Probab=94.53 E-value=0.1 Score=49.61 Aligned_cols=59 Identities=14% Similarity=0.083 Sum_probs=38.0
Q ss_pred cccccH-HHHHHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCC
Q 009534 148 TVVGLQ-STLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSR 209 (532)
Q Consensus 148 ~~vGr~-~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~ 209 (532)
+|++.. .....+...........+.|+|..|+|||+|++++++... .....+.++++.+
T Consensus 20 ~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~---~~~~~~~y~~~~~ 79 (233)
T PRK08727 20 SYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAE---QAGRSSAYLPLQA 79 (233)
T ss_pred hccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEeHHH
Confidence 454433 3444443333333445699999999999999999998873 2334566776543
No 169
>PRK04040 adenylate kinase; Provisional
Probab=94.53 E-value=0.034 Score=50.87 Aligned_cols=25 Identities=36% Similarity=0.561 Sum_probs=22.8
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..+|.|+|+.|+||||+++.+....
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998887
No 170
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=94.52 E-value=0.33 Score=45.68 Aligned_cols=48 Identities=19% Similarity=0.146 Sum_probs=36.7
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCC------CeEEEEEeCCCCCHHHHH
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNF------DFVIWEVVSRDLQLGKIQ 217 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F------~~~~wv~v~~~~~~~~l~ 217 (532)
.-.++.|+|.+|+|||++|..+..... ..- ..++|++....++...+.
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~---~~~~~~g~~~~v~yi~~e~~~~~~rl~ 71 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQ---LPGELGGLEGKVVYIDTEGAFRPERLV 71 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhh---cccccCCCcceEEEEecCCCCCHHHHH
Confidence 467999999999999999999876652 223 577899887777765544
No 171
>CHL00181 cbbX CbbX; Provisional
Probab=94.52 E-value=0.067 Score=52.51 Aligned_cols=45 Identities=24% Similarity=0.350 Sum_probs=31.9
Q ss_pred cccccHHHHHHHHHHhc---c------------CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 148 TVVGLQSTLDRVWRCLT---E------------EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 148 ~~vGr~~~~~~l~~~L~---~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+++|.++-+++|.++.. - +....+-++|.+|+||||+|+.++...
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 57888776665554431 1 122347789999999999999997765
No 172
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.52 E-value=0.19 Score=50.87 Aligned_cols=83 Identities=20% Similarity=0.283 Sum_probs=46.5
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCHHH--HHHHHHHHhcCCCCCCCCCCHHHHHHHHH
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQLGK--IQESIAKKIGLCNESWDSKSFDEKAQEIF 244 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~~~~--l~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 244 (532)
+.++|+++|.+|+||||++..+.... . ... ..+..++.. .+.+.. =++...+..+.+.. ...+.....+.+.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L-~-~~G-kkVglI~aD-t~RiaAvEQLk~yae~lgipv~--v~~d~~~L~~aL~ 313 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF-H-GKK-KTVGFITTD-HSRIGTVQQLQDYVKTIGFEVI--AVRDEAAMTRALT 313 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH-H-HcC-CcEEEEecC-CcchHHHHHHHHHhhhcCCcEE--ecCCHHHHHHHHH
Confidence 45799999999999999999998776 2 222 234445433 222222 12223333333221 2335555555554
Q ss_pred HHhc--CCcEEEe
Q 009534 245 KTMR--NTKFLIS 255 (532)
Q Consensus 245 ~~L~--~kr~LlV 255 (532)
..-. +..++||
T Consensus 314 ~lk~~~~~DvVLI 326 (436)
T PRK11889 314 YFKEEARVDYILI 326 (436)
T ss_pred HHHhccCCCEEEE
Confidence 4322 4688888
No 173
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.48 E-value=0.028 Score=51.91 Aligned_cols=23 Identities=39% Similarity=0.648 Sum_probs=20.9
Q ss_pred EEEEecCCCCcHHHHHHHHHHhc
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+|+|.|..|+||||+|+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997764
No 174
>PRK10865 protein disaggregation chaperone; Provisional
Probab=94.47 E-value=2 Score=49.04 Aligned_cols=46 Identities=28% Similarity=0.482 Sum_probs=37.6
Q ss_pred CcccccHHHHHHHHHHhcc--------C-CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTE--------E-PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~--------~-~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..++|.+..++.+.+.+.. + ...++.++|+.|+|||++|+.+.+..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999888888753 1 12578899999999999999998876
No 175
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=94.44 E-value=0.14 Score=55.90 Aligned_cols=46 Identities=24% Similarity=0.291 Sum_probs=39.4
Q ss_pred CcccccHHHHHHHHHHhccCC-ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEP-VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+++||.+..++.|.+++..++ .+.+-++|..|+||||+|+.+.+..
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaL 62 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKAL 62 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999998775 4566799999999999999887766
No 176
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.39 E-value=0.089 Score=57.18 Aligned_cols=75 Identities=12% Similarity=0.158 Sum_probs=57.4
Q ss_pred CcccccHHHHHHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcC
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQLGKIQESIAKKIGL 226 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~ 226 (532)
+.++|.++.++.+...+..+ +.+-++|..|+||||+|+.+..... ..+|+...|..- .......+.+.+...++.
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~--~~~~~~~~~~~n-p~~~~~~~~~~v~~~~G~ 105 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLP--KEELQDILVYPN-PEDPNNPKIRTVPAGKGK 105 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcC--hHhHHHheEeeC-CCcchHHHHHHHHHhcCH
Confidence 46799998888888877664 4688899999999999999988762 334677888655 444777788888776654
No 177
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=94.37 E-value=0.014 Score=57.89 Aligned_cols=80 Identities=16% Similarity=0.246 Sum_probs=63.7
Q ss_pred ccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCCc-
Q 009534 322 VSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTW- 400 (532)
Q Consensus 322 l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~- 400 (532)
+++|++|++++ +.++.+....|..+.+++.|.+.. ..++.+...... ++.+|+.|++++++++.+.|
T Consensus 273 L~~L~~lnlsn-N~i~~i~~~aFe~~a~l~eL~L~~-N~l~~v~~~~f~----------~ls~L~tL~L~~N~it~~~~~ 340 (498)
T KOG4237|consen 273 LPNLRKLNLSN-NKITRIEDGAFEGAAELQELYLTR-NKLEFVSSGMFQ----------GLSGLKTLSLYDNQITTVAPG 340 (498)
T ss_pred cccceEeccCC-CccchhhhhhhcchhhhhhhhcCc-chHHHHHHHhhh----------ccccceeeeecCCeeEEEecc
Confidence 67799999988 458888777788888999999887 477777665554 68899999999998888765
Q ss_pred -hhcCCCcceeeec
Q 009534 401 -LILAPNLKLIQMY 413 (532)
Q Consensus 401 -l~~l~~L~~L~l~ 413 (532)
+..+..|.+|.+.
T Consensus 341 aF~~~~~l~~l~l~ 354 (498)
T KOG4237|consen 341 AFQTLFSLSTLNLL 354 (498)
T ss_pred cccccceeeeeehc
Confidence 6677888888876
No 178
>PRK08116 hypothetical protein; Validated
Probab=94.36 E-value=0.15 Score=49.46 Aligned_cols=70 Identities=24% Similarity=0.285 Sum_probs=43.5
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhc
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQLGKIQESIAKKIGLCNESWDSKSFDEKAQEIFKTMR 248 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~ 248 (532)
.-+-++|..|+|||.||.++++... .+-..+++++ ..+++..+....... ...+ ...+.+.+.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~---~~~~~v~~~~------~~~ll~~i~~~~~~~----~~~~----~~~~~~~l~ 177 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELI---EKGVPVIFVN------FPQLLNRIKSTYKSS----GKED----ENEIIRSLV 177 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEE------HHHHHHHHHHHHhcc----cccc----HHHHHHHhc
Confidence 4578999999999999999999983 2234556664 444555555544321 1111 223445566
Q ss_pred CCcEEEe
Q 009534 249 NTKFLIS 255 (532)
Q Consensus 249 ~kr~LlV 255 (532)
+-.+|++
T Consensus 178 ~~dlLvi 184 (268)
T PRK08116 178 NADLLIL 184 (268)
T ss_pred CCCEEEE
Confidence 6667666
No 179
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.34 E-value=0.077 Score=45.36 Aligned_cols=39 Identities=26% Similarity=0.351 Sum_probs=29.7
Q ss_pred HHHHHHHHHhcc--CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 154 STLDRVWRCLTE--EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 154 ~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++.+++.+.+.. ..-.+|.+.|.-|+||||+++.+....
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 344555555543 245689999999999999999999987
No 180
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=94.30 E-value=0.066 Score=55.54 Aligned_cols=46 Identities=28% Similarity=0.405 Sum_probs=37.1
Q ss_pred CcccccHHHHHHHHHHhcc-------------CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTE-------------EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.++.|.++.++++.+.+.- ...+-+.++|+.|+|||++|+++.+..
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el 241 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET 241 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 3568899999988887631 134567789999999999999999987
No 181
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.30 E-value=0.061 Score=46.65 Aligned_cols=39 Identities=21% Similarity=0.346 Sum_probs=28.5
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCC
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSR 209 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~ 209 (532)
++|.|+|..|+|||||++.+.+... +..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~--~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK--RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH--HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh--HcCCceEEEEEccC
Confidence 4799999999999999999999983 34566555665544
No 182
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=94.26 E-value=0.084 Score=56.60 Aligned_cols=45 Identities=22% Similarity=0.289 Sum_probs=38.1
Q ss_pred cccccHHHHHHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 148 TVVGLQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 148 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+++|.+..++.+...+......-+-|+|..|+|||++|+.+++..
T Consensus 66 ~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999888766655667789999999999999998753
No 183
>PRK06893 DNA replication initiation factor; Validated
Probab=94.24 E-value=0.078 Score=50.25 Aligned_cols=39 Identities=26% Similarity=0.353 Sum_probs=30.3
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeC
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVS 208 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~ 208 (532)
..+.+-++|+.|+|||+|++++.+... .....+.|+++.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~---~~~~~~~y~~~~ 76 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYL---LNQRTAIYIPLS 76 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEeeHH
Confidence 346789999999999999999999873 233456777764
No 184
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.22 E-value=0.11 Score=44.77 Aligned_cols=43 Identities=33% Similarity=0.229 Sum_probs=31.6
Q ss_pred EEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCHHHHHHH
Q 009534 171 VGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQLGKIQES 219 (532)
Q Consensus 171 i~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~ 219 (532)
|-++|..|+|||++|+.+....- ....-+.++...+..++...
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~------~~~~~i~~~~~~~~~dl~g~ 44 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG------RPVIRINCSSDTTEEDLIGS 44 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT------CEEEEEE-TTTSTHHHHHCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhh------cceEEEEeccccccccceee
Confidence 46899999999999999998871 13334567777777776654
No 185
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.20 E-value=0.14 Score=52.38 Aligned_cols=46 Identities=20% Similarity=0.241 Sum_probs=38.1
Q ss_pred CcccccHHHHHHHHHHhccC--------------CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEE--------------PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~--------------~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..++|.++.++.+..++... ..+-|-++|+.|+|||++|+.+....
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999988887430 14678899999999999999998876
No 186
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.16 E-value=0.06 Score=59.83 Aligned_cols=46 Identities=26% Similarity=0.359 Sum_probs=40.1
Q ss_pred CcccccHHHHHHHHHHhccCCce-EEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPVG-IVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.++||.+.-++.+.+++..+++. .+-++|+.|+||||+|+.+....
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~L 62 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGL 62 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46899999999999999877654 45899999999999999999887
No 187
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=94.15 E-value=0.062 Score=53.90 Aligned_cols=46 Identities=20% Similarity=0.292 Sum_probs=40.4
Q ss_pred CcccccHHHHHHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+.+||.++.+..+...+.++++.-+-|.|..|+||||+|+.+++-.
T Consensus 17 ~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 17 TAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred HHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 5689999999999988888777767799999999999999997765
No 188
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.13 E-value=0.16 Score=55.25 Aligned_cols=75 Identities=15% Similarity=0.143 Sum_probs=52.5
Q ss_pred CcccccHHHHHHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcC
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQLGKIQESIAKKIGL 226 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~ 226 (532)
+.++|.++.++.+...+..+. -+-++|+.|+||||+|+.+.+... ...|...+++.- .......+++.+...++.
T Consensus 18 ~~viG~~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~~l~--~~~~~~~~~~~n-~~~~~~~~~~~v~~~~g~ 92 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAELLP--DEELEDILVYPN-PEDPNMPRIVEVPAGEGR 92 (608)
T ss_pred hhccCHHHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHHHcC--chhheeEEEEeC-CCCCchHHHHHHHHhhch
Confidence 467899988887777776643 444899999999999999998872 223444444432 333556667887777764
No 189
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.13 E-value=0.12 Score=46.97 Aligned_cols=23 Identities=39% Similarity=0.736 Sum_probs=21.5
Q ss_pred EEEEecCCCCcHHHHHHHHHHhc
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+|+|.|..|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999886
No 190
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.12 E-value=0.066 Score=56.25 Aligned_cols=45 Identities=27% Similarity=0.297 Sum_probs=38.5
Q ss_pred CcccccHHHHHHHHHHhccCCce-EEEEecCCCCcHHHHHHHHHHh
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPVG-IVGLYGMGGVGKTTLLTQINNS 191 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~ 191 (532)
.++||.+..++.+.+.+..+++. -+-++|+.|+||||+|+.+...
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~ 58 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLC 58 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHH
Confidence 46899999999888888877654 7889999999999999998764
No 191
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.09 E-value=0.16 Score=51.92 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=22.2
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..++.++|++|+||||++..+....
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999998654
No 192
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.07 E-value=0.041 Score=50.20 Aligned_cols=23 Identities=39% Similarity=0.602 Sum_probs=21.3
Q ss_pred EEEEecCCCCcHHHHHHHHHHhc
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+|+|.|..|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998876
No 193
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.06 E-value=0.16 Score=42.84 Aligned_cols=76 Identities=17% Similarity=0.242 Sum_probs=35.8
Q ss_pred cCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCC--c
Q 009534 323 SNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVT--W 400 (532)
Q Consensus 323 ~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~--~ 400 (532)
++|+.+.+.. .+..++...+.++++|+.+.+.+ .++.++..... .+++|+.+.+.+ .+..++ .
T Consensus 12 ~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~----------~~~~l~~i~~~~-~~~~i~~~~ 76 (129)
T PF13306_consen 12 SNLESITFPN--TIKKIGENAFSNCTSLKSINFPN--NLTSIGDNAFS----------NCKSLESITFPN-NLKSIGDNA 76 (129)
T ss_dssp TT--EEEETS--T--EE-TTTTTT-TT-SEEEESS--TTSCE-TTTTT----------T-TT-EEEEETS-TT-EE-TTT
T ss_pred CCCCEEEECC--CeeEeChhhcccccccccccccc--cccccceeeee----------cccccccccccc-ccccccccc
Confidence 4566666653 46666666666666777777655 35555544333 455667777754 222222 2
Q ss_pred hhcCCCcceeeec
Q 009534 401 LILAPNLKLIQMY 413 (532)
Q Consensus 401 l~~l~~L~~L~l~ 413 (532)
+..+++|+.+.+.
T Consensus 77 F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 77 FSNCTNLKNIDIP 89 (129)
T ss_dssp TTT-TTECEEEET
T ss_pred ccccccccccccC
Confidence 4456667666663
No 194
>PRK00625 shikimate kinase; Provisional
Probab=94.06 E-value=0.045 Score=49.33 Aligned_cols=23 Identities=26% Similarity=0.340 Sum_probs=20.8
Q ss_pred EEEEecCCCCcHHHHHHHHHHhc
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.|.++||.|+||||+++.+.++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998876
No 195
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=94.06 E-value=0.16 Score=48.28 Aligned_cols=51 Identities=18% Similarity=0.249 Sum_probs=37.4
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCC----CCeEEEEEeCCCCCHHHHHH
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNN----FDFVIWEVVSRDLQLGKIQE 218 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----F~~~~wv~v~~~~~~~~l~~ 218 (532)
.-.++.|+|.+|+|||++|..+.-.. ..... -..++|++....++...+.+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~-~~~~~~~g~~~~viyi~~e~~~~~~rl~~ 72 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTV-QLPIELGGLEGKAVYIDTEGTFRPERLVQ 72 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHe-eCccccCCCCccEEEEeCCCCcCHHHHHH
Confidence 46789999999999999999997544 11221 36899999877776654433
No 196
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=94.02 E-value=0.1 Score=51.13 Aligned_cols=45 Identities=22% Similarity=0.361 Sum_probs=31.3
Q ss_pred cccccHHHHHHHHHHhc---c-------C-----CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 148 TVVGLQSTLDRVWRCLT---E-------E-----PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 148 ~~vGr~~~~~~l~~~L~---~-------~-----~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.++|.++.++.|.++.. . + ...-+-++|..|+|||++|+.+....
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 46887777666655421 1 0 12247789999999999998887766
No 197
>PRK13975 thymidylate kinase; Provisional
Probab=93.98 E-value=0.051 Score=50.02 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=22.6
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..|.|.|+.|+||||+|+.+....
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l 26 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKL 26 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999988
No 198
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.98 E-value=0.054 Score=48.65 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=22.9
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
...|.++|+.|+||||+|+.+....
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999887
No 199
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.97 E-value=0.051 Score=49.27 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.7
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.++.|.|+.|+||||+++.+....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998875
No 200
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.95 E-value=0.071 Score=51.32 Aligned_cols=62 Identities=21% Similarity=0.295 Sum_probs=44.7
Q ss_pred HHHHHHhcc--CCceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCHHHHHHH
Q 009534 157 DRVWRCLTE--EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQLGKIQES 219 (532)
Q Consensus 157 ~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~ 219 (532)
.+++..+.. ++..+|+|.|.+|+||+||.-.+-... ..+++=-.++=|+-|+.+.-..++.+
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l-~~~G~rVaVlAVDPSSp~TGGsiLGD 101 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL-RERGHRVAVLAVDPSSPFTGGSILGD 101 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH-HHCCcEEEEEEECCCCCCCCcccccc
Confidence 445555543 578899999999999999999988877 44455455666666777766555544
No 201
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=93.95 E-value=0.052 Score=50.07 Aligned_cols=53 Identities=19% Similarity=0.150 Sum_probs=36.0
Q ss_pred ccHHHHHHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEE
Q 009534 151 GLQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEV 206 (532)
Q Consensus 151 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~ 206 (532)
.+..+-...++.|. +..++.+.|++|+|||.||.+..-+. -..+.|+..+++.
T Consensus 4 p~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~-v~~g~~~kiii~R 56 (205)
T PF02562_consen 4 PKNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALEL-VKEGEYDKIIITR 56 (205)
T ss_dssp --SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHH-HHTTS-SEEEEEE
T ss_pred CCCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHH-HHhCCCcEEEEEe
Confidence 44555666677776 46799999999999999999987665 2347888888774
No 202
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.93 E-value=0.079 Score=57.30 Aligned_cols=46 Identities=26% Similarity=0.372 Sum_probs=39.2
Q ss_pred CcccccHHHHHHHHHHhccCCc-eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPV-GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+++||-+.-++.+.+++..++. +.+-++|..|+||||+|+.+....
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~L 62 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSL 62 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999989999999988765 667899999999999999996655
No 203
>PRK12377 putative replication protein; Provisional
Probab=93.92 E-value=0.26 Score=47.18 Aligned_cols=70 Identities=19% Similarity=0.244 Sum_probs=44.5
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHH
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQLGKIQESIAKKIGLCNESWDSKSFDEKAQEIFKT 246 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 246 (532)
+..-+.++|..|+|||+||.++.+... .....+.++++. ++...+-..... ... ...+.+.
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~---~~g~~v~~i~~~------~l~~~l~~~~~~------~~~----~~~~l~~ 160 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLL---AKGRSVIVVTVP------DVMSRLHESYDN------GQS----GEKFLQE 160 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEEEHH------HHHHHHHHHHhc------cch----HHHHHHH
Confidence 346788999999999999999999983 333445666443 455554443321 111 1234555
Q ss_pred hcCCcEEEe
Q 009534 247 MRNTKFLIS 255 (532)
Q Consensus 247 L~~kr~LlV 255 (532)
+..-.+|++
T Consensus 161 l~~~dLLiI 169 (248)
T PRK12377 161 LCKVDLLVL 169 (248)
T ss_pred hcCCCEEEE
Confidence 677777777
No 204
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=93.90 E-value=0.068 Score=49.80 Aligned_cols=31 Identities=23% Similarity=0.415 Sum_probs=27.0
Q ss_pred HhccCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 162 CLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 162 ~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+...++++|+++|..|+|||||..++....
T Consensus 16 ~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 16 RLDKHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred HhhhcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3445689999999999999999999998875
No 205
>COG3899 Predicted ATPase [General function prediction only]
Probab=93.88 E-value=0.17 Score=57.22 Aligned_cols=45 Identities=18% Similarity=0.400 Sum_probs=40.2
Q ss_pred cccccHHHHHHHHHHhcc---CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 148 TVVGLQSTLDRVWRCLTE---EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 148 ~~vGr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.++||+.+++.+...+.+ +.-.++.+.|..|||||++++.|....
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i 48 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPI 48 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHH
Confidence 368999999999998864 467799999999999999999999988
No 206
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.88 E-value=0.36 Score=48.75 Aligned_cols=84 Identities=19% Similarity=0.114 Sum_probs=50.4
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCC-CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHH
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDL-QLGKIQESIAKKIGLCNESWDSKSFDEKAQEIFK 245 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~-~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 245 (532)
+.+++.++|+.|+||||++..+..... .+ -..+.+|+..... ...+-++..++.++.+.. ...+..+....+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~-~~--g~~V~lItaDtyR~gAveQLk~yae~lgvpv~--~~~dp~dL~~al~~ 279 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLL-KQ--NRTVGFITTDTFRSGAVEQFQGYADKLDVELI--VATSPAELEEAVQY 279 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-Hc--CCeEEEEeCCccCccHHHHHHHHhhcCCCCEE--ecCCHHHHHHHHHH
Confidence 468999999999999999999987662 22 2356667654322 223334444454444321 23455555554443
Q ss_pred Hh--cCCcEEEe
Q 009534 246 TM--RNTKFLIS 255 (532)
Q Consensus 246 ~L--~~kr~LlV 255 (532)
.- .+..++||
T Consensus 280 l~~~~~~D~VLI 291 (407)
T PRK12726 280 MTYVNCVDHILI 291 (407)
T ss_pred HHhcCCCCEEEE
Confidence 32 45688888
No 207
>PRK06217 hypothetical protein; Validated
Probab=93.88 E-value=0.05 Score=49.60 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=21.4
Q ss_pred EEEEecCCCCcHHHHHHHHHHhc
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.|.|.|..|.||||+|+.+....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999886
No 208
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.87 E-value=0.062 Score=48.22 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=23.8
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
...+++|+|..|+|||||++.+....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 46799999999999999999999887
No 209
>PRK07952 DNA replication protein DnaC; Validated
Probab=93.87 E-value=3.4 Score=39.47 Aligned_cols=70 Identities=19% Similarity=0.283 Sum_probs=43.1
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHh
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQLGKIQESIAKKIGLCNESWDSKSFDEKAQEIFKTM 247 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L 247 (532)
...+-++|.+|+|||+||.++.+... ..-..+++++ ..++...+-..... ...+ ...+.+.+
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~---~~g~~v~~it------~~~l~~~l~~~~~~-----~~~~----~~~~l~~l 160 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELL---LRGKSVLIIT------VADIMSAMKDTFSN-----SETS----EEQLLNDL 160 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEE------HHHHHHHHHHHHhh-----cccc----HHHHHHHh
Confidence 45788999999999999999999883 2234556663 34455554443321 1111 12344456
Q ss_pred cCCcEEEe
Q 009534 248 RNTKFLIS 255 (532)
Q Consensus 248 ~~kr~LlV 255 (532)
..-.+|+|
T Consensus 161 ~~~dlLvI 168 (244)
T PRK07952 161 SNVDLLVI 168 (244)
T ss_pred ccCCEEEE
Confidence 66677777
No 210
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.86 E-value=0.048 Score=47.41 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=21.2
Q ss_pred EEEEecCCCCcHHHHHHHHHHhc
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+|.|.|..|+||||+|+.+....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 211
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=93.85 E-value=0.071 Score=56.41 Aligned_cols=46 Identities=24% Similarity=0.274 Sum_probs=39.3
Q ss_pred CcccccHHHHHHHHHHhccCC-ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEP-VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+++|.+..++.+...+..++ .+-+-++|+.|+||||+|+.+....
T Consensus 21 ~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~L 67 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAV 67 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 357999999999888887765 3578899999999999999998876
No 212
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=93.85 E-value=0.047 Score=49.65 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=21.0
Q ss_pred EEEEecCCCCcHHHHHHHHHHhc
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+|.|+|++|+||||+|+.+....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999998876
No 213
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.83 E-value=0.16 Score=49.37 Aligned_cols=33 Identities=27% Similarity=0.267 Sum_probs=28.0
Q ss_pred HHHhccCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 160 WRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 160 ~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+++...+..++.|.|..|.|||||...+.+..
T Consensus 96 r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 96 RARFAARKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred HHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 334444689999999999999999999999986
No 214
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.81 E-value=0.09 Score=53.75 Aligned_cols=46 Identities=22% Similarity=0.309 Sum_probs=40.1
Q ss_pred CcccccHHHHHHHHHHhccCCc-eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPV-GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++++|.+..++.+.+.+..+.. +.+-++|+.|+||||+|+.+.+..
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l 63 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKI 63 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999987654 578899999999999999997776
No 215
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.80 E-value=0.033 Score=52.41 Aligned_cols=134 Identities=19% Similarity=0.148 Sum_probs=80.0
Q ss_pred CCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCC--cccc-CCc-
Q 009534 325 TPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGS--KLRH-VTW- 400 (532)
Q Consensus 325 L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c--~L~~-l~~- 400 (532)
.+.+.+.+|.+...-.......+.+|+.|.+.++. +.++ .. ...+++|++|.++.+ +... ++.
T Consensus 20 v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~g-ltt~--~~----------~P~Lp~LkkL~lsdn~~~~~~~l~vl 86 (260)
T KOG2739|consen 20 VDELFLDNARSGAGKLGGLTDEFVELELLSVINVG-LTTL--TN----------FPKLPKLKKLELSDNYRRVSGGLEVL 86 (260)
T ss_pred hhhhhcchhhhcCCCcccccccccchhhhhhhccc-eeec--cc----------CCCcchhhhhcccCCcccccccceeh
Confidence 45556666544331111113345677888777653 2222 11 235889999999888 4333 433
Q ss_pred hhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccccCC----CCcCCCCccEEeecCC
Q 009534 401 LILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIYP----RALPFPHLKELHVTLC 476 (532)
Q Consensus 401 l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~----~~~~~p~L~~L~i~~C 476 (532)
+..+|+|++|++++.. +..+.. ...+..+.+|..|++.+|+-.. +-. -..-+|+|++|+..++
T Consensus 87 ~e~~P~l~~l~ls~Nk-i~~lst-----------l~pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 87 AEKAPNLKVLNLSGNK-IKDLST-----------LRPLKELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhCCceeEEeecCCc-cccccc-----------cchhhhhcchhhhhcccCCccc-cccHHHHHHHHhhhhcccccccc
Confidence 4567999999997643 333211 1245567888899999987554 211 1234789999998887
Q ss_pred CCCCCCCC
Q 009534 477 PKLKKLPF 484 (532)
Q Consensus 477 ~~L~~lp~ 484 (532)
..=+..+.
T Consensus 154 ~~~Ea~~~ 161 (260)
T KOG2739|consen 154 DGEEAPEA 161 (260)
T ss_pred CCcccccc
Confidence 66554443
No 216
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=93.79 E-value=0.08 Score=57.45 Aligned_cols=46 Identities=28% Similarity=0.382 Sum_probs=39.9
Q ss_pred CcccccHHHHHHHHHHhccCCc-eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPV-GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++++|.+..++.+.+++..+++ +.+-++|..|+||||+|+.+....
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~L 62 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSL 62 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 4689999999999999988764 568899999999999999987764
No 217
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=93.79 E-value=0.091 Score=53.35 Aligned_cols=46 Identities=15% Similarity=0.261 Sum_probs=39.8
Q ss_pred CcccccHHHHHHHHHHhccCC-ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEP-VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+++|.++.++.+.+++..++ .+.+-++|+.|+||||+|+.+....
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l 60 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKAL 60 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 457999999999999998765 4567889999999999999998776
No 218
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=93.79 E-value=0.07 Score=46.92 Aligned_cols=36 Identities=25% Similarity=0.189 Sum_probs=27.1
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEE
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEV 206 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~ 206 (532)
..+|=|.|..|.||||||+++..+.. ..-..+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~---~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLF---ARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHH---HTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEec
Confidence 45788999999999999999999982 3334555554
No 219
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=93.77 E-value=0.098 Score=47.65 Aligned_cols=36 Identities=31% Similarity=0.478 Sum_probs=29.8
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEE
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEV 206 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~ 206 (532)
.+++.|+|+.|+|||||++.+..+. ...|...++-+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~---~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF---PDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS---TTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc---ccccccceeec
Confidence 5789999999999999999999987 46786555554
No 220
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=93.77 E-value=0.046 Score=46.03 Aligned_cols=28 Identities=43% Similarity=0.501 Sum_probs=19.1
Q ss_pred EEEecCCCCcHHHHHHHHHHhccCCCCCCCe
Q 009534 171 VGLYGMGGVGKTTLLTQINNSFLHTPNNFDF 201 (532)
Q Consensus 171 i~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~ 201 (532)
+-++|..|+||||+|+.+.... ...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~---~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL---GLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT---T--EEE
T ss_pred EeeECCCccHHHHHHHHHHHHc---CCceeE
Confidence 4589999999999999999887 466753
No 221
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=93.76 E-value=0.1 Score=52.33 Aligned_cols=46 Identities=20% Similarity=0.276 Sum_probs=38.5
Q ss_pred CcccccHHHHHHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+.+||.++.+..++-.+.++...-+.|.|..|+||||+++.+..-.
T Consensus 4 ~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred cccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 4579999999888777777666667799999999999999997654
No 222
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.75 E-value=0.081 Score=56.24 Aligned_cols=46 Identities=22% Similarity=0.320 Sum_probs=39.9
Q ss_pred CcccccHHHHHHHHHHhccCCc-eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPV-GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+++||-+.-++.+.+++..+++ +.+-++|+.|+||||+|+.+....
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l 62 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCL 62 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999987764 457899999999999999998876
No 223
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.72 E-value=0.067 Score=48.29 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=23.5
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
...+|.|.|+.|+||||+|+.+....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999999887
No 224
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.70 E-value=0.081 Score=56.90 Aligned_cols=46 Identities=28% Similarity=0.380 Sum_probs=40.1
Q ss_pred CcccccHHHHHHHHHHhccCCc-eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPV-GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+++||.+.-++.+.+++..+++ +.+-++|..|+||||+|+.+.+..
T Consensus 16 ddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaL 62 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSL 62 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999988764 567889999999999999998776
No 225
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.70 E-value=0.047 Score=28.51 Aligned_cols=17 Identities=35% Similarity=0.651 Sum_probs=9.7
Q ss_pred CCccEEeecCCCCCCCCC
Q 009534 466 PHLKELHVTLCPKLKKLP 483 (532)
Q Consensus 466 p~L~~L~i~~C~~L~~lp 483 (532)
++|+.|++++|. |+++|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 467788888877 77766
No 226
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.69 E-value=0.29 Score=51.31 Aligned_cols=83 Identities=18% Similarity=0.193 Sum_probs=46.8
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCC--HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHH
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQ--LGKIQESIAKKIGLCNESWDSKSFDEKAQEIFK 245 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~--~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 245 (532)
.+|++++|+.|+||||.+..+.... ..+..-..+..|+.. .+. ..+-++...+.++.+.. ...+..+.... ..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~-~~~~G~~kV~LI~~D-t~RigA~EQLr~~AeilGVpv~--~~~~~~Dl~~a-L~ 330 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARC-VMRHGASKVALLTTD-SYRIGGHEQLRIYGKILGVPVH--AVKDAADLRLA-LS 330 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHH-HHhcCCCeEEEEeCC-ccchhHHHHHHHHHHHhCCCee--ccCCchhHHHH-HH
Confidence 4799999999999999999998766 222222244555432 232 22333344444444321 11222223322 24
Q ss_pred HhcCCcEEEe
Q 009534 246 TMRNTKFLIS 255 (532)
Q Consensus 246 ~L~~kr~LlV 255 (532)
.+.++.+.+|
T Consensus 331 ~L~d~d~VLI 340 (484)
T PRK06995 331 ELRNKHIVLI 340 (484)
T ss_pred hccCCCeEEe
Confidence 5677888888
No 227
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=93.69 E-value=0.08 Score=55.88 Aligned_cols=46 Identities=30% Similarity=0.480 Sum_probs=37.3
Q ss_pred CcccccHHHHHHHHHHhcc-------------CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTE-------------EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.++.|.++.++.+.+.+.. ...+-+-++|+.|+|||++|+++++..
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL 240 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSL 240 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhh
Confidence 3567899999998887632 134558889999999999999999987
No 228
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.68 E-value=0.081 Score=50.13 Aligned_cols=63 Identities=17% Similarity=0.207 Sum_probs=37.9
Q ss_pred HHHHHHHHhcc--CCceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCHHHHHH
Q 009534 155 TLDRVWRCLTE--EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQLGKIQE 218 (532)
Q Consensus 155 ~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~~~~l~~ 218 (532)
...++++.+.. ++..+|+|.|.+|+||+||...+.... ..+++=-.++=|+-++.++-..++.
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~-~~~g~~VaVlAVDPSSp~tGGAlLG 78 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIREL-RERGKRVAVLAVDPSSPFTGGALLG 78 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHH-HHTT--EEEEEE-GGGGCC---SS-
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHH-hhcCCceEEEEECCCCCCCCCcccc
Confidence 44556666543 478899999999999999999988877 3333323455555566665555444
No 229
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=93.68 E-value=0.15 Score=46.88 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=21.7
Q ss_pred EEEEecCCCCcHHHHHHHHHHhc
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+|+|.|+.|+||||+++.+.+..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999887
No 230
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.67 E-value=0.43 Score=49.16 Aligned_cols=85 Identities=18% Similarity=0.212 Sum_probs=48.2
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCC-CCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHH
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSR-DLQLGKIQESIAKKIGLCNESWDSKSFDEKAQEIFK 245 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~-~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 245 (532)
+..+++++|..|+||||+...+.... ......+.+..+.... .....+-+....+-++.+.. ...+..+.. ....
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~-~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~--~v~~~~dl~-~al~ 265 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARA-VIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVR--SIKDIADLQ-LMLH 265 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCcee--cCCCHHHHH-HHHH
Confidence 35799999999999999999887654 1112223444444322 11222223344444554332 223344443 3344
Q ss_pred HhcCCcEEEe
Q 009534 246 TMRNTKFLIS 255 (532)
Q Consensus 246 ~L~~kr~LlV 255 (532)
.+.++...+|
T Consensus 266 ~l~~~d~VLI 275 (420)
T PRK14721 266 ELRGKHMVLI 275 (420)
T ss_pred HhcCCCEEEe
Confidence 5788888888
No 231
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.63 E-value=0.055 Score=49.03 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.8
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++|.|+|+.|+||||+++.+....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999998865
No 232
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.56 E-value=0.43 Score=48.79 Aligned_cols=84 Identities=17% Similarity=0.267 Sum_probs=49.1
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCC--CCCCeEEEEEeCCCCCHHH--HHHHHHHHhcCCCCCCCCCCHHHHHHH
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTP--NNFDFVIWEVVSRDLQLGK--IQESIAKKIGLCNESWDSKSFDEKAQE 242 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~~F~~~~wv~v~~~~~~~~--l~~~i~~~l~~~~~~~~~~~~~~~~~~ 242 (532)
..+++.++|..|+||||.+..+.... ... .+-..+..++... +.... -++..++.++.+.. ...+..+....
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~-~~~~~~~g~~V~lit~Dt-~R~aa~eQL~~~a~~lgvpv~--~~~~~~~l~~~ 248 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIY-GINSDDKSLNIKIITIDN-YRIGAKKQIQTYGDIMGIPVK--AIESFKDLKEE 248 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HhhhccCCCeEEEEeccC-ccHHHHHHHHHHhhcCCcceE--eeCcHHHHHHH
Confidence 46799999999999999999988766 211 1123455555443 33322 24444554554321 23344455444
Q ss_pred HHHHhcCCcEEEe
Q 009534 243 IFKTMRNTKFLIS 255 (532)
Q Consensus 243 l~~~L~~kr~LlV 255 (532)
+.+ +.+..+++|
T Consensus 249 L~~-~~~~DlVLI 260 (388)
T PRK12723 249 ITQ-SKDFDLVLV 260 (388)
T ss_pred HHH-hCCCCEEEE
Confidence 443 477778887
No 233
>PRK13947 shikimate kinase; Provisional
Probab=93.54 E-value=0.062 Score=48.26 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=21.1
Q ss_pred EEEEecCCCCcHHHHHHHHHHhc
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
-|.|+|+.|+||||+|+.+.+..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999887
No 234
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.53 E-value=0.068 Score=44.57 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=20.3
Q ss_pred EEEecCCCCcHHHHHHHHHHhc
Q 009534 171 VGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 171 i~I~G~gGiGKTtLa~~v~~~~ 192 (532)
|.|+|..|+|||||.+.+.+..
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 6899999999999999998776
No 235
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.50 E-value=0.23 Score=41.90 Aligned_cols=114 Identities=14% Similarity=0.181 Sum_probs=52.1
Q ss_pred ccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCCc--hhcCCCcceeeeccccc
Q 009534 340 SVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTW--LILAPNLKLIQMYDCRC 417 (532)
Q Consensus 340 ~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~--l~~l~~L~~L~l~~c~~ 417 (532)
+...+..+++|+.+.+.. .++.+...... .+++|+.+++.+. +..++. +..+++|+.+.+.+ .
T Consensus 4 ~~~~F~~~~~l~~i~~~~--~~~~I~~~~F~----------~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~ 68 (129)
T PF13306_consen 4 GNNAFYNCSNLESITFPN--TIKKIGENAFS----------NCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--N 68 (129)
T ss_dssp -TTTTTT-TT--EEEETS--T--EE-TTTTT----------T-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--T
T ss_pred CHHHHhCCCCCCEEEECC--CeeEeChhhcc----------ccccccccccccc-ccccceeeeecccccccccccc--c
Confidence 334466666777777763 45555554433 5667888887763 444432 56676788887743 3
Q ss_pred cccccccccccCcCcccCcccccccccceeeccccccccccCCCCcCCCCccEEeecCCCCCCCCCC
Q 009534 418 LEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIYPRALPFPHLKELHVTLCPKLKKLPF 484 (532)
Q Consensus 418 l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~ 484 (532)
+..+.. ..+..+++|+.+.+.. ++..++...+.-..|+.+.+.+ .++.++.
T Consensus 69 ~~~i~~------------~~F~~~~~l~~i~~~~--~~~~i~~~~f~~~~l~~i~~~~--~~~~i~~ 119 (129)
T PF13306_consen 69 LKSIGD------------NAFSNCTNLKNIDIPS--NITEIGSSSFSNCNLKEINIPS--NITKIEE 119 (129)
T ss_dssp T-EE-T------------TTTTT-TTECEEEETT--T-BEEHTTTTTT-T--EEE-TT--B-SS---
T ss_pred cccccc------------ccccccccccccccCc--cccEEchhhhcCCCceEEEECC--CccEECC
Confidence 444443 2455577777777743 3555655433322677666653 5555544
No 236
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=93.48 E-value=0.26 Score=46.49 Aligned_cols=46 Identities=26% Similarity=0.267 Sum_probs=36.0
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCHHHH
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQLGKI 216 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~~~~l 216 (532)
.-.++-|+|.+|+|||++|.++..... ..-..++|++.. .++...+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~---~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAA---KNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEECC-CCCHHHH
Confidence 467999999999999999999987763 334678999887 5555444
No 237
>PRK09087 hypothetical protein; Validated
Probab=93.46 E-value=0.16 Score=47.95 Aligned_cols=26 Identities=35% Similarity=0.355 Sum_probs=22.6
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..+.+.|+|..|+|||+|++.++...
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~ 68 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKS 68 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhc
Confidence 34668999999999999999988765
No 238
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.46 E-value=0.24 Score=51.48 Aligned_cols=83 Identities=23% Similarity=0.268 Sum_probs=46.3
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCH--HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHH
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQL--GKIQESIAKKIGLCNESWDSKSFDEKAQEIFK 245 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~~--~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 245 (532)
.+++.++|++|+||||++..+.... .....-..+..|+... +.. ..-++...+.++.+.. ...+..+....+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~-~~~~~g~~V~li~~D~-~r~~a~eqL~~~a~~~~vp~~--~~~~~~~l~~~l~- 295 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARY-ALLYGKKKVALITLDT-YRIGAVEQLKTYAKIMGIPVE--VVYDPKELAKALE- 295 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEECCc-cHHHHHHHHHHHHHHhCCceE--ccCCHHhHHHHHH-
Confidence 4699999999999999999887665 2012224566666433 221 1122222333333221 2233444554444
Q ss_pred HhcCCcEEEe
Q 009534 246 TMRNTKFLIS 255 (532)
Q Consensus 246 ~L~~kr~LlV 255 (532)
.+.+..++||
T Consensus 296 ~~~~~DlVlI 305 (424)
T PRK05703 296 QLRDCDVILI 305 (424)
T ss_pred HhCCCCEEEE
Confidence 3567788888
No 239
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=93.45 E-value=0.11 Score=46.53 Aligned_cols=44 Identities=23% Similarity=0.259 Sum_probs=31.3
Q ss_pred ccccHHHHHHHHHHhcc--CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 149 VVGLQSTLDRVWRCLTE--EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 149 ~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++|....+.++++.+.. ....-|-|+|..|+||+.+|+.+++..
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 36777777777776643 223445599999999999999999965
No 240
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.45 E-value=0.058 Score=44.37 Aligned_cols=22 Identities=32% Similarity=0.700 Sum_probs=18.9
Q ss_pred EEEecCCCCcHHHHHHHHHHhc
Q 009534 171 VGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 171 i~I~G~gGiGKTtLa~~v~~~~ 192 (532)
|=|+|.+|+|||++|+.+..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 3489999999999999977666
No 241
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.45 E-value=0.19 Score=48.69 Aligned_cols=50 Identities=18% Similarity=0.123 Sum_probs=40.0
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCHHHHHHHHH
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQLGKIQESIA 221 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~ 221 (532)
.-+++.|.|.+|+|||+++.++..... .+.+.++||+... +..++.+...
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~---~~ge~vlyvs~~e--~~~~l~~~~~ 71 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGA---REGEPVLYVSTEE--SPEELLENAR 71 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHH---hcCCcEEEEEecC--CHHHHHHHHH
Confidence 678999999999999999999888874 5588999998877 4445555443
No 242
>PRK13949 shikimate kinase; Provisional
Probab=93.44 E-value=0.068 Score=48.03 Aligned_cols=23 Identities=35% Similarity=0.397 Sum_probs=21.3
Q ss_pred EEEEecCCCCcHHHHHHHHHHhc
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
-|.|+|+.|+||||+++.+....
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48899999999999999999887
No 243
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.42 E-value=0.062 Score=47.07 Aligned_cols=23 Identities=26% Similarity=0.521 Sum_probs=20.2
Q ss_pred EEEEecCCCCcHHHHHHHHHHhc
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++.+.|+.|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 46789999999999999997764
No 244
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=93.42 E-value=0.14 Score=49.46 Aligned_cols=62 Identities=16% Similarity=0.168 Sum_probs=48.8
Q ss_pred CcccccHHHHHHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEE-EEEeCC
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVI-WEVVSR 209 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~-wv~v~~ 209 (532)
++++|.+..++.+.+.+........-.+|+.|.|||+-|.+..... --.+.|.+++ -.++|.
T Consensus 36 de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L-~~~~~~~~rvl~lnaSd 98 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARAL-NCEQLFPCRVLELNASD 98 (346)
T ss_pred HhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHh-cCccccccchhhhcccc
Confidence 4679999999999999988788889999999999999999998887 3334565443 333444
No 245
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.42 E-value=0.1 Score=56.62 Aligned_cols=46 Identities=20% Similarity=0.221 Sum_probs=39.3
Q ss_pred CcccccHHHHHHHHHHhccCCc-eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPV-GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+++|.+.-++.+.+++..+++ +.+-++|+.|+||||+|+.+....
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L 62 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAV 62 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999998887665 558899999999999999988776
No 246
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.40 E-value=0.071 Score=48.16 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=21.9
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++|.+.|+.|+||||+|+.+....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998775
No 247
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=93.40 E-value=0.13 Score=44.26 Aligned_cols=68 Identities=16% Similarity=0.151 Sum_probs=38.8
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhc
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQLGKIQESIAKKIGLCNESWDSKSFDEKAQEIFKTMR 248 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~ 248 (532)
.=|-|.|-+|+||||++..+.... . .-|+++++-..-..+....=+... ...-+.+...+.|-..+.
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~-----~---~~~i~isd~vkEn~l~~gyDE~y~-----c~i~DEdkv~D~Le~~m~ 74 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKT-----G---LEYIEISDLVKENNLYEGYDEEYK-----CHILDEDKVLDELEPLMI 74 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHh-----C---CceEehhhHHhhhcchhccccccc-----CccccHHHHHHHHHHHHh
Confidence 447789999999999999998665 2 336666553332222222111111 123345556666666554
Q ss_pred C
Q 009534 249 N 249 (532)
Q Consensus 249 ~ 249 (532)
+
T Consensus 75 ~ 75 (176)
T KOG3347|consen 75 E 75 (176)
T ss_pred c
Confidence 4
No 248
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=93.40 E-value=0.13 Score=54.70 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=22.9
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.--.|+|+|+.|+|||||.+.+....
T Consensus 347 ~g~riaiiG~NG~GKSTLlk~l~g~~ 372 (530)
T COG0488 347 RGDRIAIVGPNGAGKSTLLKLLAGEL 372 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhc
Confidence 45679999999999999999997766
No 249
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=93.39 E-value=0.12 Score=53.05 Aligned_cols=46 Identities=11% Similarity=0.166 Sum_probs=38.9
Q ss_pred CcccccHHHHHHHHHHhccCC----------ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEP----------VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~----------~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++++|.+.-++.+.+++..+. .+-+-++|+.|+|||++|+.+....
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l 60 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAAL 60 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 468999999999999987653 4668899999999999999997765
No 250
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=93.36 E-value=0.11 Score=56.33 Aligned_cols=46 Identities=20% Similarity=0.329 Sum_probs=40.2
Q ss_pred CcccccHHHHHHHHHHhccCCc-eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPV-GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+++|.+..++.+.+++..++. +-+-++|+.|+||||+|+.+....
T Consensus 24 ~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L 70 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARAL 70 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999987764 468899999999999999998866
No 251
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.32 E-value=0.071 Score=49.47 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=23.3
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-.+|+|+|+.|+||||||+.+....
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 35689999999999999999998875
No 252
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=93.30 E-value=0.27 Score=45.48 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=23.3
Q ss_pred CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 166 EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 166 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+....|+|+|.+|+|||||.+.+.+..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcch
Confidence 346789999999999999999988764
No 253
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.29 E-value=0.066 Score=47.32 Aligned_cols=20 Identities=35% Similarity=0.640 Sum_probs=18.8
Q ss_pred EEEEecCCCCcHHHHHHHHH
Q 009534 170 IVGLYGMGGVGKTTLLTQIN 189 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~ 189 (532)
.|.|.|.+|+||||+++.+-
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999987
No 254
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=93.28 E-value=0.097 Score=57.40 Aligned_cols=46 Identities=24% Similarity=0.368 Sum_probs=36.2
Q ss_pred CcccccHHHHHHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+.++||++++.++++.|....-.=-..+|-+|||||+++.-+..+.
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rI 215 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRI 215 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHH
Confidence 4579999999999999976421122347899999999998888776
No 255
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=93.25 E-value=0.11 Score=56.38 Aligned_cols=46 Identities=26% Similarity=0.327 Sum_probs=39.6
Q ss_pred CcccccHHHHHHHHHHhccCCc-eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPV-GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.++||.+.-++.+.+.+..+++ +.+-++|..|+||||+|+.+....
T Consensus 16 ~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L 62 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGL 62 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999987765 456789999999999999998776
No 256
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.23 E-value=0.089 Score=48.63 Aligned_cols=27 Identities=19% Similarity=0.377 Sum_probs=24.5
Q ss_pred CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 166 EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 166 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+..+|.|+|+.|+||||+|+.+....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998876
No 257
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=93.23 E-value=0.28 Score=46.27 Aligned_cols=46 Identities=22% Similarity=0.437 Sum_probs=37.5
Q ss_pred CcccccHHHHHHHHHHh----ccCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCL----TEEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++++|.+..++.+++-. ......-+-+||..|+|||++++++.+..
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y 76 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEY 76 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHH
Confidence 56899999998887753 23345566779999999999999999988
No 258
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.22 E-value=0.17 Score=50.27 Aligned_cols=49 Identities=27% Similarity=0.300 Sum_probs=33.6
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCHHHHHHH
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQLGKIQES 219 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~ 219 (532)
.+++-+.|.|||||||+|-+..-... .....+.-|+.....++.+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA---~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLA---ESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHH---HcCCcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999999655552 22244666666555555554443
No 259
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.21 E-value=0.38 Score=53.06 Aligned_cols=83 Identities=14% Similarity=0.195 Sum_probs=51.1
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCC--HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHH
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQ--LGKIQESIAKKIGLCNESWDSKSFDEKAQEIFK 245 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~--~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 245 (532)
.+++.++|+.|+||||.+..+.... ........+..++.. .+. ..+-++...+.++.+.. ...+..+..+.+ +
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~-~~~~G~kkV~lit~D-t~RigA~eQL~~~a~~~gvpv~--~~~~~~~l~~al-~ 259 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC-VAREGADQLALLTTD-SFRIGALEQLRIYGRILGVPVH--AVKDAADLRFAL-A 259 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH-HHHcCCCeEEEecCc-ccchHHHHHHHHHHHhCCCCcc--ccCCHHHHHHHH-H
Confidence 4799999999999999999988766 211212345555433 233 34444555555555432 233555554444 4
Q ss_pred HhcCCcEEEe
Q 009534 246 TMRNTKFLIS 255 (532)
Q Consensus 246 ~L~~kr~LlV 255 (532)
.++++.++||
T Consensus 260 ~~~~~D~VLI 269 (767)
T PRK14723 260 ALGDKHLVLI 269 (767)
T ss_pred HhcCCCEEEE
Confidence 5678889999
No 260
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.21 E-value=0.17 Score=46.96 Aligned_cols=43 Identities=28% Similarity=0.460 Sum_probs=28.4
Q ss_pred EEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCHH
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQLG 214 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~~~ 214 (532)
.|+|.|-||+||||+|..+..... .++.|+ +.=|+...++++.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~-~~~~~~-VLvVDaDpd~nL~ 44 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLL-SKGGYN-VLVVDADPDSNLP 44 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHH-hcCCce-EEEEeCCCCCChH
Confidence 689999999999999999666663 223244 3335444444443
No 261
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.19 E-value=0.12 Score=55.36 Aligned_cols=46 Identities=26% Similarity=0.368 Sum_probs=39.6
Q ss_pred CcccccHHHHHHHHHHhccCCc-eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPV-GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++++|.+.-++.+.+++..++. +.+-++|+.|+||||+|+.+....
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l 62 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSL 62 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999987765 456899999999999999997766
No 262
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=93.16 E-value=0.29 Score=47.88 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=24.1
Q ss_pred CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 166 EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 166 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..+-+|.|.|..|+||||+|..+.++.
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l 116 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRL 116 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999999887
No 263
>PRK15453 phosphoribulokinase; Provisional
Probab=93.15 E-value=0.59 Score=45.26 Aligned_cols=78 Identities=19% Similarity=0.129 Sum_probs=43.7
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCC-eEEEEEeCCCC--CHHHHHHHHHH--HhcCCCCC--CCCCCHHHH
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFD-FVIWEVVSRDL--QLGKIQESIAK--KIGLCNES--WDSKSFDEK 239 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~-~~~wv~v~~~~--~~~~l~~~i~~--~l~~~~~~--~~~~~~~~~ 239 (532)
+..+|+|.|-.|+||||+|+.+.+.. . +.. ..+.++....+ +-..+-..+.. .-+...+. .+..+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if-~---~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL 79 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIF-R---RENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDEL 79 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-h---hcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHH
Confidence 56799999999999999999998765 2 222 23444433222 33333222221 12211122 255566677
Q ss_pred HHHHHHHhc
Q 009534 240 AQEIFKTMR 248 (532)
Q Consensus 240 ~~~l~~~L~ 248 (532)
.+.++....
T Consensus 80 ~~~l~~l~~ 88 (290)
T PRK15453 80 EQLFREYGE 88 (290)
T ss_pred HHHHHHHhc
Confidence 777766544
No 264
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=93.13 E-value=0.7 Score=44.46 Aligned_cols=70 Identities=20% Similarity=0.280 Sum_probs=46.1
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHH
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQLGKIQESIAKKIGLCNESWDSKSFDEKAQEIFKT 246 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 246 (532)
+..=+.++|..|+|||.||.++.+... +.. -.+.+++ ..++.+++...... .....+|.+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~--~~g-~sv~f~~------~~el~~~Lk~~~~~----------~~~~~~l~~~ 164 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL--KAG-ISVLFIT------APDLLSKLKAAFDE----------GRLEEKLLRE 164 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH--HcC-CeEEEEE------HHHHHHHHHHHHhc----------CchHHHHHHH
Confidence 567788999999999999999999983 222 3455663 44455555554432 1123345555
Q ss_pred hcCCcEEEe
Q 009534 247 MRNTKFLIS 255 (532)
Q Consensus 247 L~~kr~LlV 255 (532)
+..-.+||+
T Consensus 165 l~~~dlLIi 173 (254)
T COG1484 165 LKKVDLLII 173 (254)
T ss_pred hhcCCEEEE
Confidence 666777777
No 265
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.12 E-value=0.08 Score=46.49 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=20.2
Q ss_pred EEEecCCCCcHHHHHHHHHHhc
Q 009534 171 VGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 171 i~I~G~gGiGKTtLa~~v~~~~ 192 (532)
|.++|+.|.||||+|+.+....
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 6789999999999999998776
No 266
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.11 E-value=0.12 Score=55.57 Aligned_cols=46 Identities=22% Similarity=0.261 Sum_probs=39.9
Q ss_pred CcccccHHHHHHHHHHhccCCc-eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPV-GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++++|.+.-++.+.+++..+++ +.+-++|+.|+||||+|+.+....
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l 59 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSL 59 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999988764 457899999999999999998776
No 267
>PF13245 AAA_19: Part of AAA domain
Probab=93.10 E-value=0.22 Score=38.09 Aligned_cols=26 Identities=31% Similarity=0.370 Sum_probs=18.4
Q ss_pred CceEEEEecCCCCcHHHHH-HHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLL-TQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa-~~v~~~~ 192 (532)
+.+++.|.|.+|.|||+++ ..+.+-.
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567888999999999544 4444433
No 268
>PRK06851 hypothetical protein; Provisional
Probab=93.08 E-value=1.4 Score=44.60 Aligned_cols=50 Identities=24% Similarity=0.288 Sum_probs=34.5
Q ss_pred cccHHHHHHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEE
Q 009534 150 VGLQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWE 205 (532)
Q Consensus 150 vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv 205 (532)
.|.-.-.+.+. .+--+++.|.|..|+||||+++.++.... ...++...+=
T Consensus 200 ~G~~s~~~~l~----~~~~~~~~i~G~pG~GKstl~~~i~~~a~--~~G~~v~~~h 249 (367)
T PRK06851 200 KGAVDFVPSLT----EGVKNRYFLKGRPGTGKSTMLKKIAKAAE--ERGFDVEVYH 249 (367)
T ss_pred CcHHhhHHhHh----cccceEEEEeCCCCCcHHHHHHHHHHHHH--hCCCeEEEEe
Confidence 45444444444 34468899999999999999999999883 3345444433
No 269
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=93.08 E-value=0.22 Score=46.24 Aligned_cols=49 Identities=16% Similarity=0.158 Sum_probs=32.9
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCHHHHHHH
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQLGKIQES 219 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~ 219 (532)
-..|+|-|+.|+||||.++.++... + ...-.++|..-.....+.+..+.
T Consensus 3 g~fI~iEGiDGaGKTT~~~~L~~~l-~--~~g~~v~~trEP~~~~ige~iR~ 51 (208)
T COG0125 3 GMFIVIEGIDGAGKTTQAELLKERL-E--ERGIKVVLTREPGGTPIGEKIRE 51 (208)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH-H--HcCCeEEEEeCCCCChHHHHHHH
Confidence 3579999999999999999999998 3 32224555544333334444444
No 270
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=93.04 E-value=0.12 Score=45.52 Aligned_cols=39 Identities=23% Similarity=0.379 Sum_probs=29.9
Q ss_pred EEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCC
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDL 211 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~ 211 (532)
++.|+|..|+||||++..+..... ..-..++|++.....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA---TKGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH---hcCCEEEEEECCcch
Confidence 467999999999999999988872 233567788766543
No 271
>PLN02924 thymidylate kinase
Probab=93.04 E-value=0.23 Score=46.71 Aligned_cols=53 Identities=15% Similarity=0.281 Sum_probs=35.0
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQLGKIQESIAK 222 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~ 222 (532)
-..|+|.|..|+||||+++.+.+.. .. ..+....+-.........+..+.++.
T Consensus 16 g~~IviEGiDGsGKsTq~~~L~~~l-~~-~g~~v~~~~ep~~~~~~g~~ir~~l~ 68 (220)
T PLN02924 16 GALIVLEGLDRSGKSTQCAKLVSFL-KG-LGVAAELWRFPDRTTSVGQMISAYLS 68 (220)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-Hh-cCCCceeeeCCCCCChHHHHHHHHHh
Confidence 4689999999999999999999998 43 23444333222223345555555444
No 272
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.04 E-value=0.1 Score=49.33 Aligned_cols=86 Identities=17% Similarity=0.206 Sum_probs=48.5
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEE---------eCCCCCHHHH--HHHHHHHhcCCCCCC----
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEV---------VSRDLQLGKI--QESIAKKIGLCNESW---- 231 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~---------v~~~~~~~~l--~~~i~~~l~~~~~~~---- 231 (532)
+..+|-++||+|.||||..+.++.... ..+..-.-|. ..-..|+++. .+.+.++....++.-
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~---~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~Ts 94 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLH---AKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTS 94 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHh---hccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhh
Confidence 467888999999999999999999883 2232211111 2223355543 345667666543210
Q ss_pred ---CCCCHHHHHHHHHHHhcCCcEEEe
Q 009534 232 ---DSKSFDEKAQEIFKTMRNTKFLIS 255 (532)
Q Consensus 232 ---~~~~~~~~~~~l~~~L~~kr~LlV 255 (532)
.....++.+..|.+.-..-+|.||
T Consensus 95 LNLF~tk~dqv~~~iek~~~~~~~~li 121 (366)
T KOG1532|consen 95 LNLFATKFDQVIELIEKRAEEFDYVLI 121 (366)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCEEEE
Confidence 011233444444454445567777
No 273
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=92.98 E-value=0.08 Score=45.74 Aligned_cols=23 Identities=43% Similarity=0.733 Sum_probs=20.7
Q ss_pred EEEEecCCCCcHHHHHHHHHHhc
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+|.|+|+.|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999998875
No 274
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=92.98 E-value=0.0087 Score=63.67 Aligned_cols=109 Identities=17% Similarity=0.202 Sum_probs=65.1
Q ss_pred chhhhcCCccCceeeEEeccchhHHHhhcCCcccccccCCCeEEEecCCCCCccccccccccccccceeeccccCcceee
Q 009534 286 LVEELLGLKHLNVLTITLHSFAALQRLLTYPSLQSIVSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEME 365 (532)
Q Consensus 286 ~~~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~ 365 (532)
+=+.|+-+++|+.|+++-.....+..+. .+++|++|+|++ +.++.+|......+. |+.|.+++. .++++-
T Consensus 179 mD~SLqll~ale~LnLshNk~~~v~~Lr-------~l~~LkhLDlsy-N~L~~vp~l~~~gc~-L~~L~lrnN-~l~tL~ 248 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFTKVDNLR-------RLPKLKHLDLSY-NCLRHVPQLSMVGCK-LQLLNLRNN-ALTTLR 248 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhhhhHHHH-------hccccccccccc-chhccccccchhhhh-heeeeeccc-HHHhhh
Confidence 4445666778888886533322222221 135588888876 446777654444433 777777763 444431
Q ss_pred ecccCCccccccccCCCCCccEEEEeCC---ccccCCchhcCCCcceeeecccc
Q 009534 366 IDYAGGEVKRIRETHGFFSLHKVSIWGS---KLRHVTWLILAPNLKLIQMYDCR 416 (532)
Q Consensus 366 ~~~~~~~~~~~~~~~~l~~L~~L~l~~c---~L~~l~~l~~l~~L~~L~l~~c~ 416 (532)
. +.++.+|+.|+++.| ...++.++..|..|..|.+.+.+
T Consensus 249 g------------ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 249 G------------IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred h------------HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 1 225778888888877 23335567778888888887655
No 275
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=92.97 E-value=0.23 Score=46.75 Aligned_cols=53 Identities=28% Similarity=0.312 Sum_probs=30.3
Q ss_pred EEEEecCCCCcHHHHHHHHHHhccCC----CCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSFLHT----PNNFDFVIWEVVSRDLQLGKIQESIAK 222 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~~~~----~~~F~~~~wv~v~~~~~~~~l~~~i~~ 222 (532)
+..|+|++|+||||++..+.....+. ...-...+-++......+..+...+.+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 78899999999998777666655110 123344444544554556666666555
No 276
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=92.96 E-value=0.23 Score=48.92 Aligned_cols=54 Identities=19% Similarity=0.217 Sum_probs=42.0
Q ss_pred CcccccHHHHHH---HHHHhccC--CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCe
Q 009534 147 PTVVGLQSTLDR---VWRCLTEE--PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDF 201 (532)
Q Consensus 147 ~~~vGr~~~~~~---l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~ 201 (532)
+.+||..+..+. +++++..+ .-+.|-|+|++|.|||+||-.+.... -..-.|..
T Consensus 39 dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eL-G~dvPF~~ 97 (450)
T COG1224 39 DGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIAREL-GEDVPFVA 97 (450)
T ss_pred CcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHh-CCCCCcee
Confidence 568997755544 67777766 46789999999999999999999988 54556643
No 277
>PRK14530 adenylate kinase; Provisional
Probab=92.95 E-value=0.088 Score=49.36 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=21.2
Q ss_pred EEEEecCCCCcHHHHHHHHHHhc
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.|.|+|+.|+||||+|+.+....
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998776
No 278
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=92.95 E-value=0.25 Score=45.40 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=22.5
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..|+|.|..|+||||+++.+.+..
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l 27 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLL 27 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999887
No 279
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=92.95 E-value=0.11 Score=48.01 Aligned_cols=25 Identities=32% Similarity=0.312 Sum_probs=22.8
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..+|.|.|.+|+||||+|+.+....
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998876
No 280
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=92.94 E-value=0.099 Score=47.12 Aligned_cols=25 Identities=28% Similarity=0.305 Sum_probs=22.3
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
...|.|+|+.|+||||+|+.+....
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 3468999999999999999998876
No 281
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=92.94 E-value=0.088 Score=47.66 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=21.1
Q ss_pred EEEEecCCCCcHHHHHHHHHHhc
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.|-|.|.+|+||||+|+.+.++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47799999999999999999986
No 282
>PRK05642 DNA replication initiation factor; Validated
Probab=92.93 E-value=0.25 Score=46.98 Aligned_cols=38 Identities=21% Similarity=0.359 Sum_probs=28.9
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeC
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVS 208 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~ 208 (532)
...+-|+|..|+|||.|++++.+... ..-..++|++..
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~---~~~~~v~y~~~~ 82 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFE---QRGEPAVYLPLA 82 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH---hCCCcEEEeeHH
Confidence 36788999999999999999998762 222456777643
No 283
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=92.93 E-value=0.1 Score=50.92 Aligned_cols=40 Identities=23% Similarity=0.326 Sum_probs=28.5
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCC
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDL 211 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~ 211 (532)
+.|+|.|-||+||||++..+..... +..+ .++-|+.....
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La--~~G~-~VlliD~D~q~ 40 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALA--EMGK-KVMIVGCDPKA 40 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHH--HCCC-eEEEEeCCCCC
Confidence 4789999999999999999988873 2233 34555554333
No 284
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=92.93 E-value=0.084 Score=48.22 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.4
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.++.|+|+.|+|||||++.+....
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999997765
No 285
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=92.91 E-value=0.14 Score=45.34 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=30.4
Q ss_pred HHHHHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 154 STLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 154 ~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+.++++.+.+.+ +++.++|..|+|||||...+..+.
T Consensus 24 ~g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 24 EGIEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTHHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 456777777764 899999999999999999998874
No 286
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=92.90 E-value=0.33 Score=50.29 Aligned_cols=50 Identities=28% Similarity=0.367 Sum_probs=32.7
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQLGKIQESIAKKI 224 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l 224 (532)
...+-|+|..|+|||+|++++++... .+..=..+++++ ..++...+...+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~-~~~~~~~v~yi~------~~~~~~~~~~~~ 185 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEIL-ENNPNAKVVYVS------SEKFTNDFVNAL 185 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHH-HhCCCCcEEEEE------HHHHHHHHHHHH
Confidence 35688999999999999999999873 221112445553 334444555444
No 287
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=92.86 E-value=0.16 Score=53.31 Aligned_cols=46 Identities=20% Similarity=0.277 Sum_probs=40.0
Q ss_pred CcccccHHHHHHHHHHhccCCc-eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPV-GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++++|.+..++.+.+++..++. +.+-++|+.|+||||+|+.+....
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l 63 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKAL 63 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4689999999999999987764 667889999999999999998766
No 288
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=92.86 E-value=0.41 Score=44.83 Aligned_cols=43 Identities=19% Similarity=0.132 Sum_probs=32.8
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCC
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQ 212 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~ 212 (532)
.-.++.|.|.+|+||||+|.++..... ..-..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~---~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETA---GQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEECCCCCH
Confidence 468899999999999999999887762 2334678887655443
No 289
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=92.86 E-value=0.077 Score=47.23 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=19.7
Q ss_pred EEEecCCCCcHHHHHHHHHHhc
Q 009534 171 VGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 171 i~I~G~gGiGKTtLa~~v~~~~ 192 (532)
|.++|+.|+||||+|+.+....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999998876
No 290
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=92.81 E-value=0.4 Score=43.06 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=21.2
Q ss_pred EEEEecCCCCcHHHHHHHHHHhc
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++.++|++|+||||++..+....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998876
No 291
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=92.81 E-value=0.17 Score=46.75 Aligned_cols=36 Identities=28% Similarity=0.376 Sum_probs=27.6
Q ss_pred HHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 157 DRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 157 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+.++.+...+-++..|.|.+|+||||+++.+....
T Consensus 7 ~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~ 42 (196)
T PF13604_consen 7 REAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEAL 42 (196)
T ss_dssp HHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHH
Confidence 344444444456788899999999999999988777
No 292
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=92.80 E-value=0.027 Score=55.00 Aligned_cols=173 Identities=22% Similarity=0.201 Sum_probs=94.0
Q ss_pred chhhhcCCccCceeeEEeccchhHHHhhcCCcccccccCCCeEEEecCCCCCcccccc-------------ccccccccc
Q 009534 286 LVEELLGLKHLNVLTITLHSFAALQRLLTYPSLQSIVSNTPSLSLTNCRSLSSLSVLT-------------LASLRHLEA 352 (532)
Q Consensus 286 ~~~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~-------------l~~l~~L~~ 352 (532)
+...|...++|+.++++-... ..+-......+.+++++|++|.+.+|- +....... .++-+.|+.
T Consensus 84 l~~aL~~~~~L~~ldLSDNA~-G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv 161 (382)
T KOG1909|consen 84 LSKALLGCPKLQKLDLSDNAF-GPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRV 161 (382)
T ss_pred HHHHHhcCCceeEeecccccc-CccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEE
Confidence 455677778999998653322 111111122223334678999998874 43332221 233345555
Q ss_pred eeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCcccc--CC----chhcCCCcceeeecccccccccccccc
Q 009534 353 LDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRH--VT----WLILAPNLKLIQMYDCRCLEEIISLEK 426 (532)
Q Consensus 353 L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~--l~----~l~~l~~L~~L~l~~c~~l~~i~~~~~ 426 (532)
+.... +.+++-+.... .......+.|+.+.+..+.+.. +. .+.++|+|+.|++.+..--.+-..
T Consensus 162 ~i~~r-Nrlen~ga~~~------A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~--- 231 (382)
T KOG1909|consen 162 FICGR-NRLENGGATAL------AEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSV--- 231 (382)
T ss_pred EEeec-cccccccHHHH------HHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHH---
Confidence 55543 12332211100 0112245788999888884433 31 267899999999976432111100
Q ss_pred ccCcCcccCcccccccccceeeccccccccccCC------CCcCCCCccEEeecCCC
Q 009534 427 LGEVPSEEMQNLIPFARLERLSLGGLENLRSIYP------RALPFPHLKELHVTLCP 477 (532)
Q Consensus 427 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~------~~~~~p~L~~L~i~~C~ 477 (532)
. -...+..+|.|+.|++.+|- |+.=.. -....|+|+.|.+.+|.
T Consensus 232 --~----LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 232 --A----LAKALSSWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred --H----HHHHhcccchheeecccccc-cccccHHHHHHHHhccCCCCceeccCcch
Confidence 0 01256678899999999983 332211 11238899999988875
No 293
>PRK13695 putative NTPase; Provisional
Probab=92.77 E-value=0.13 Score=46.45 Aligned_cols=34 Identities=29% Similarity=0.462 Sum_probs=25.6
Q ss_pred EEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEE
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWE 205 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv 205 (532)
.+.|+|..|+|||||++.+++.. .. ..+....|+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l-~~-~G~~~~g~~ 35 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL-KE-EGYKVGGFY 35 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-HH-CCCeEEEEE
Confidence 47899999999999999998876 32 235444454
No 294
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=92.67 E-value=0.19 Score=50.01 Aligned_cols=74 Identities=18% Similarity=0.386 Sum_probs=53.3
Q ss_pred CcccccHHHHHHHHHHhcc------CCceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEE----eCCCC---CH
Q 009534 147 PTVVGLQSTLDRVWRCLTE------EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEV----VSRDL---QL 213 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~----v~~~~---~~ 213 (532)
..++|.++.++++++.+.. ..-+|+-.+|+.|.||||+|..+-.-. ..| .+|.- +...+ =.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l----e~y--~~Y~l~~~Pm~e~PL~L~P 134 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL----EEY--PIYTLKGCPMHEEPLHLFP 134 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh----heE--EEEEecCCccccChhhhCC
Confidence 4789999999999998864 367899999999999999999998877 334 44442 11111 13
Q ss_pred HHHHHHHHHHhcC
Q 009534 214 GKIQESIAKKIGL 226 (532)
Q Consensus 214 ~~l~~~i~~~l~~ 226 (532)
.++-+.+.+.++.
T Consensus 135 ~~~r~~~~~~~~~ 147 (358)
T PF08298_consen 135 KELRREFEDELGI 147 (358)
T ss_pred HhHHHHHHHHhCc
Confidence 4555556666665
No 295
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=92.66 E-value=0.38 Score=50.27 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=22.2
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-+-|+|..|+|||+|++++.+..
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l 165 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHAL 165 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHH
Confidence 567899999999999999999987
No 296
>PRK13946 shikimate kinase; Provisional
Probab=92.66 E-value=0.1 Score=47.56 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=22.9
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+.|.++|+.|+||||+++.+.+..
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999999887
No 297
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=92.65 E-value=0.17 Score=47.87 Aligned_cols=36 Identities=25% Similarity=0.335 Sum_probs=30.2
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEe
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVV 207 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v 207 (532)
-.++|+|..|.||||+...+.... ...|.++.+++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~---~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYL---RHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhh---cccCCEEEEEec
Confidence 357899999999999999999877 578988877753
No 298
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=92.63 E-value=0.097 Score=46.26 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=21.6
Q ss_pred EEEEecCCCCcHHHHHHHHHHhc
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
|++|+|+.|+||||++..+....
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999987
No 299
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.61 E-value=0.19 Score=52.90 Aligned_cols=46 Identities=30% Similarity=0.397 Sum_probs=37.9
Q ss_pred CcccccHHHHHHHHHHhcc------------CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTE------------EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+++-|.+..+.++.+++.. ...+=+-++|++|.|||.||+++.+..
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel 247 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL 247 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc
Confidence 4567899988888888753 145667899999999999999999988
No 300
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=92.58 E-value=0.16 Score=50.87 Aligned_cols=46 Identities=20% Similarity=0.317 Sum_probs=36.3
Q ss_pred CcccccHHHHHHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+.++|.++.++.+.-.+.+.+..=+-+.|..|+||||+|+.+..-.
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred HHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 4679999988887765554444457899999999999999986654
No 301
>PRK14527 adenylate kinase; Provisional
Probab=92.57 E-value=0.12 Score=47.47 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=23.5
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
...+|.|.|++|.||||+|+.+..+.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998876
No 302
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=92.57 E-value=0.3 Score=48.49 Aligned_cols=74 Identities=18% Similarity=0.129 Sum_probs=46.0
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCC---CCCCCHHHHHHHH
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQLGKIQESIAKKIGLCNES---WDSKSFDEKAQEI 243 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~---~~~~~~~~~~~~l 243 (532)
.-+++-|.|..|+||||||.++..... ..-..++||+....++.. .+++++...+. ....+.++....+
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~---~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQ---KAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 457899999999999999998776662 334567899876655553 24444432211 1233455555555
Q ss_pred HHHhc
Q 009534 244 FKTMR 248 (532)
Q Consensus 244 ~~~L~ 248 (532)
...++
T Consensus 126 ~~li~ 130 (321)
T TIGR02012 126 ETLVR 130 (321)
T ss_pred HHHhh
Confidence 55444
No 303
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=92.52 E-value=0.093 Score=45.07 Aligned_cols=25 Identities=36% Similarity=0.537 Sum_probs=22.3
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
-.+++|+|..|+|||||.+.+....
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEccCCCccccceeeecccc
Confidence 4689999999999999999987766
No 304
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.52 E-value=0.17 Score=54.97 Aligned_cols=46 Identities=22% Similarity=0.316 Sum_probs=39.4
Q ss_pred CcccccHHHHHHHHHHhccCCc-eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPV-GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++++|.+.-++.+.+++..++. +.+-++|..|+||||+|+.+....
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l 62 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAV 62 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999998887654 556799999999999999998776
No 305
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=92.51 E-value=0.023 Score=55.56 Aligned_cols=139 Identities=15% Similarity=0.066 Sum_probs=82.3
Q ss_pred cCCCeEEEecCCCCCccccc----cccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccC
Q 009534 323 SNTPSLSLTNCRSLSSLSVL----TLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHV 398 (532)
Q Consensus 323 ~~L~~L~l~~c~~l~~l~~~----~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l 398 (532)
++|+.+...+ +.+.+-+.. .+...+.|+.+.+..-..-. .+. . -.......+++|+.|+|.+|.++.-
T Consensus 157 ~~Lrv~i~~r-Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~---eG~-~---al~eal~~~~~LevLdl~DNtft~e 228 (382)
T KOG1909|consen 157 PKLRVFICGR-NRLENGGATALAEAFQSHPTLEEVRLSQNGIRP---EGV-T---ALAEALEHCPHLEVLDLRDNTFTLE 228 (382)
T ss_pred cceEEEEeec-cccccccHHHHHHHHHhccccceEEEecccccC---chh-H---HHHHHHHhCCcceeeecccchhhhH
Confidence 5688888877 345544332 24556788888877532111 110 0 0011133689999999999955541
Q ss_pred C------chhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeecccccccccc-----CCCCcCCCC
Q 009534 399 T------WLILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSI-----YPRALPFPH 467 (532)
Q Consensus 399 ~------~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i-----~~~~~~~p~ 467 (532)
- .+..+|+|+.|++.+|. ++.=....-... --..+|+|+.|.+.++. ++.- -......|.
T Consensus 229 gs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~a-------l~~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~d 299 (382)
T KOG1909|consen 229 GSVALAKALSSWPHLRELNLGDCL-LENEGAIAFVDA-------LKESAPSLEVLELAGNE-ITRDAALALAACMAEKPD 299 (382)
T ss_pred HHHHHHHHhcccchheeecccccc-cccccHHHHHHH-------HhccCCCCceeccCcch-hHHHHHHHHHHHHhcchh
Confidence 1 27788999999999996 221111000000 11237999999988763 2111 113445899
Q ss_pred ccEEeecCCCC
Q 009534 468 LKELHVTLCPK 478 (532)
Q Consensus 468 L~~L~i~~C~~ 478 (532)
|++|++.+|.-
T Consensus 300 L~kLnLngN~l 310 (382)
T KOG1909|consen 300 LEKLNLNGNRL 310 (382)
T ss_pred hHHhcCCcccc
Confidence 99999999854
No 306
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=92.50 E-value=0.089 Score=49.23 Aligned_cols=25 Identities=40% Similarity=0.519 Sum_probs=22.2
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhcc
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSFL 193 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~~ 193 (532)
.-|.|+|++|+|||||+.++..+..
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~ 30 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEF 30 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcC
Confidence 4688999999999999999988763
No 307
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=92.48 E-value=0.11 Score=46.58 Aligned_cols=22 Identities=41% Similarity=0.594 Sum_probs=19.4
Q ss_pred EEEecCCCCcHHHHHHHHHHhc
Q 009534 171 VGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 171 i~I~G~gGiGKTtLa~~v~~~~ 192 (532)
|-|.|..|+||||+.+.+.+..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 5789999999999999999887
No 308
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=92.47 E-value=0.33 Score=49.49 Aligned_cols=102 Identities=18% Similarity=0.196 Sum_probs=57.3
Q ss_pred HHHHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCHHHH--HHHHHHHhcCCCCCCC
Q 009534 155 TLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQLGKI--QESIAKKIGLCNESWD 232 (532)
Q Consensus 155 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~~~~l--~~~i~~~l~~~~~~~~ 232 (532)
-.+.+++.+.......+-|.|.||+|||++.+++.+.. +. .-..++.+ .+.......+ -..+...++.+.....
T Consensus 9 ~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~-~~--~~~~~~~~-a~tg~AA~~i~~G~T~hs~f~i~~~~~~ 84 (364)
T PF05970_consen 9 VFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYL-RS--RGKKVLVT-APTGIAAFNIPGGRTIHSFFGIPINNNE 84 (364)
T ss_pred HHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHh-cc--ccceEEEe-cchHHHHHhccCCcchHHhcCccccccc
Confidence 34555666666667788999999999999999999988 32 22233322 2222222222 1223333333321101
Q ss_pred CCC-HHHHHHHHHHHhcCCcEEEe-hhhHH
Q 009534 233 SKS-FDEKAQEIFKTMRNTKFLIS-NLKML 260 (532)
Q Consensus 233 ~~~-~~~~~~~l~~~L~~kr~LlV-~lAm~ 260 (532)
... .......+++.++..++||+ ++.|.
T Consensus 85 ~~~~~~~~~~~~~~~l~~~~~lIiDEism~ 114 (364)
T PF05970_consen 85 KSQCKISKNSRLRERLRKADVLIIDEISMV 114 (364)
T ss_pred cccccccccchhhhhhhhheeeecccccch
Confidence 110 11234567788889999999 55544
No 309
>PRK13948 shikimate kinase; Provisional
Probab=92.46 E-value=0.14 Score=46.59 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=23.4
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..+.|.++||.|+||||+++.+....
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~l 34 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRAL 34 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 45788999999999999999998876
No 310
>PRK00698 tmk thymidylate kinase; Validated
Probab=92.46 E-value=0.3 Score=45.19 Aligned_cols=25 Identities=20% Similarity=0.400 Sum_probs=22.8
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
-.+|+|.|+.|+||||+++.+.+..
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l 27 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELL 27 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999998876
No 311
>PRK04182 cytidylate kinase; Provisional
Probab=92.45 E-value=0.12 Score=46.65 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=21.6
Q ss_pred EEEEecCCCCcHHHHHHHHHHhc
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+|.|.|+.|+||||+|+.+..+.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999998876
No 312
>PRK14737 gmk guanylate kinase; Provisional
Probab=92.43 E-value=0.13 Score=46.95 Aligned_cols=26 Identities=15% Similarity=0.291 Sum_probs=23.2
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..++|.|.|+.|+|||||++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 35789999999999999999998765
No 313
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=92.43 E-value=0.11 Score=48.68 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=22.2
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-.+++|+|..|.|||||++.+..-.
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 45689999999999999999986543
No 314
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=92.42 E-value=0.23 Score=50.21 Aligned_cols=47 Identities=21% Similarity=0.259 Sum_probs=41.2
Q ss_pred CcccccHHHHHHHHHHhccCC-ceEEEEecCCCCcHHHHHHHHHHhcc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEP-VGIVGLYGMGGVGKTTLLTQINNSFL 193 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~ 193 (532)
..++|.++..+.+...+..++ .+.+-|+|+.|+||||+|..+.....
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Ll 70 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHIL 70 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHc
Confidence 467999999999999998775 45688999999999999999988874
No 315
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.42 E-value=0.17 Score=47.17 Aligned_cols=26 Identities=38% Similarity=0.475 Sum_probs=23.1
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-.+++|+|..|.|||||++.+....
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 35689999999999999999998765
No 316
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.41 E-value=0.081 Score=27.61 Aligned_cols=15 Identities=13% Similarity=0.374 Sum_probs=5.6
Q ss_pred CccEEEEeCCccccC
Q 009534 384 SLHKVSIWGSKLRHV 398 (532)
Q Consensus 384 ~L~~L~l~~c~L~~l 398 (532)
+|+.|+|++|+++.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 444555555444433
No 317
>PRK06835 DNA replication protein DnaC; Validated
Probab=92.41 E-value=8 Score=38.72 Aligned_cols=37 Identities=30% Similarity=0.354 Sum_probs=28.8
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEe
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVV 207 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v 207 (532)
..-+-++|..|+|||+||.++.+... ..-..++++++
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~---~~g~~V~y~t~ 219 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELL---DRGKSVIYRTA 219 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH---HCCCeEEEEEH
Confidence 36799999999999999999999884 22235666653
No 318
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=92.40 E-value=0.17 Score=54.02 Aligned_cols=46 Identities=22% Similarity=0.255 Sum_probs=33.7
Q ss_pred CcccccHHHHHHHHHHhc---c---------CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLT---E---------EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++++|.++.++++.+.+. + ...+=+-++|++|+|||++|+.+.+..
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~ 112 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 112 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc
Confidence 457888877666555442 2 123447789999999999999998876
No 319
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=92.40 E-value=0.17 Score=47.45 Aligned_cols=35 Identities=29% Similarity=0.138 Sum_probs=27.3
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEE
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWE 205 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv 205 (532)
.-.+++|+|..|.|||||++.+..-. ....+.+++
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~ 62 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIE----KPTRGKIRF 62 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEE
Confidence 34689999999999999999998865 233455554
No 320
>PRK06761 hypothetical protein; Provisional
Probab=92.38 E-value=0.18 Score=49.09 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=22.6
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++|.|.|+.|+||||+++.+.+..
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L 27 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDIL 27 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999999987
No 321
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=92.36 E-value=0.11 Score=46.26 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=17.4
Q ss_pred EEEecCCCCcHHHHHHHHHHh
Q 009534 171 VGLYGMGGVGKTTLLTQINNS 191 (532)
Q Consensus 171 i~I~G~gGiGKTtLa~~v~~~ 191 (532)
|+|.|..|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999865
No 322
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=92.35 E-value=0.2 Score=48.67 Aligned_cols=39 Identities=23% Similarity=0.373 Sum_probs=29.0
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeC
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVS 208 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~ 208 (532)
+.+++.++|++|+||||.+..+.... . ..-..+..++..
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l-~--~~g~~V~li~~D 109 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKL-K--KQGKSVLLAAGD 109 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-H--hcCCEEEEEeCC
Confidence 46899999999999999999988776 2 222355566543
No 323
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=92.31 E-value=0.14 Score=45.94 Aligned_cols=25 Identities=32% Similarity=0.372 Sum_probs=22.3
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
-.++.|.|+.|+|||||++.++.+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4678899999999999999999874
No 324
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=92.30 E-value=0.17 Score=47.40 Aligned_cols=26 Identities=31% Similarity=0.379 Sum_probs=23.1
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-.+++|+|..|.|||||++.+..-.
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 34689999999999999999998765
No 325
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=92.28 E-value=0.69 Score=44.43 Aligned_cols=79 Identities=13% Similarity=0.071 Sum_probs=42.8
Q ss_pred EEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCC--CHHHHHHHHHHHhc--CCCCC--CCCCCHHHHHHHH
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDL--QLGKIQESIAKKIG--LCNES--WDSKSFDEKAQEI 243 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~--~~~~l~~~i~~~l~--~~~~~--~~~~~~~~~~~~l 243 (532)
+|+|.|..|+||||+|+++.... ...+ ..++.++....+ +-...-..+..... ..-+. .+..+.+.+.+.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l-~~~g--~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l 77 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIF-AREG--IHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELF 77 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH-HhcC--CceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHH
Confidence 58999999999999999998776 2211 123444432222 22222222222221 11111 2455666677666
Q ss_pred HHHhcCCc
Q 009534 244 FKTMRNTK 251 (532)
Q Consensus 244 ~~~L~~kr 251 (532)
+..-.++.
T Consensus 78 ~~L~~g~~ 85 (277)
T cd02029 78 RTYGETGR 85 (277)
T ss_pred HHHHcCCC
Confidence 66655443
No 326
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=92.27 E-value=0.31 Score=48.43 Aligned_cols=75 Identities=20% Similarity=0.134 Sum_probs=46.5
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCC---CCCCCHHHHHHHH
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQLGKIQESIAKKIGLCNES---WDSKSFDEKAQEI 243 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~---~~~~~~~~~~~~l 243 (532)
.-+++-|+|++|+||||||..+.-... ..-..++||+....++.. .++.++...+. ....+.++....+
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~---~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQ---KLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 457888999999999999999776652 334578899877766653 23334332111 1233455555555
Q ss_pred HHHhcC
Q 009534 244 FKTMRN 249 (532)
Q Consensus 244 ~~~L~~ 249 (532)
...++.
T Consensus 126 ~~li~s 131 (325)
T cd00983 126 DSLVRS 131 (325)
T ss_pred HHHHhc
Confidence 544443
No 327
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.27 E-value=0.19 Score=45.50 Aligned_cols=26 Identities=42% Similarity=0.457 Sum_probs=22.9
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-.+++|+|..|.|||||++.+....
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998765
No 328
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=92.27 E-value=0.11 Score=45.72 Aligned_cols=23 Identities=39% Similarity=0.436 Sum_probs=20.3
Q ss_pred EEEEecCCCCcHHHHHHHHHHhc
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
-|+++|.+|+|||||++.+.+..
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~ 24 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDE 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998754
No 329
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=92.23 E-value=0.13 Score=45.16 Aligned_cols=25 Identities=36% Similarity=0.476 Sum_probs=21.4
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+++.|+|.+|+||||+.+.+-...
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5799999999999999998776544
No 330
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=92.19 E-value=0.19 Score=46.08 Aligned_cols=26 Identities=35% Similarity=0.590 Sum_probs=22.8
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-.+++|+|..|.|||||.+.+....
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998765
No 331
>PLN02200 adenylate kinase family protein
Probab=92.19 E-value=0.15 Score=48.48 Aligned_cols=26 Identities=31% Similarity=0.277 Sum_probs=23.2
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+.+|.|.|+.|+||||+|+.+....
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998766
No 332
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=92.19 E-value=0.32 Score=44.15 Aligned_cols=44 Identities=23% Similarity=0.160 Sum_probs=31.0
Q ss_pred EEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCHHHHHHH
Q 009534 171 VGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQLGKIQES 219 (532)
Q Consensus 171 i~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~ 219 (532)
+-|.|.+|+|||++|..+..... ..=..++|++... +..++.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~---~~g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL---ARGEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH---HCCCcEEEEECCC--CHHHHHHH
Confidence 56899999999999999877653 2225677887654 45555444
No 333
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=92.17 E-value=0.52 Score=45.66 Aligned_cols=55 Identities=25% Similarity=0.234 Sum_probs=34.3
Q ss_pred HHHHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCHHHHH
Q 009534 155 TLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQLGKIQ 217 (532)
Q Consensus 155 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~~~~l~ 217 (532)
-.+.+..++..+ .-+-++|..|+|||++|+.+.... .. ....+......+..++.
T Consensus 10 l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~l---g~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 10 VTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKR---DR---PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHh---CC---CEEEEeCCccCCHHHHh
Confidence 344455555443 344589999999999999998754 22 23455555555554444
No 334
>PRK13976 thymidylate kinase; Provisional
Probab=92.17 E-value=0.32 Score=45.35 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=21.8
Q ss_pred EEEEecCCCCcHHHHHHHHHHhc
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.|+|-|..|+||||+++.+++..
T Consensus 2 fIv~EGiDGsGKsTq~~~L~~~L 24 (209)
T PRK13976 2 FITFEGIDGSGKTTQSRLLAEYL 24 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999988
No 335
>PRK06620 hypothetical protein; Validated
Probab=92.17 E-value=0.12 Score=48.31 Aligned_cols=24 Identities=25% Similarity=0.077 Sum_probs=21.5
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+.+-|+|+.|+|||+|++.+.+..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~ 68 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS 68 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc
Confidence 568999999999999999987765
No 336
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=92.17 E-value=0.18 Score=47.09 Aligned_cols=35 Identities=26% Similarity=0.203 Sum_probs=27.1
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEE
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWE 205 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv 205 (532)
.-.+++|+|..|.|||||++.+..-. ....+.+++
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~----~~~~G~i~~ 61 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGAL----TPSRGQVRI 61 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCceEEE
Confidence 34689999999999999999998765 234555554
No 337
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=92.13 E-value=0.47 Score=49.79 Aligned_cols=72 Identities=17% Similarity=0.178 Sum_probs=43.3
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHh
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQLGKIQESIAKKIGLCNESWDSKSFDEKAQEIFKTM 247 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L 247 (532)
..-+-|+|..|+|||+|++++.+.. .....-..++++ +..++...+...+... ......+++.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l-~~~~~~~~v~yv------~~~~f~~~~~~~l~~~---------~~~~~~~~~~~ 204 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYI-ESNFSDLKVSYM------SGDEFARKAVDILQKT---------HKEIEQFKNEI 204 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHH-HHhCCCCeEEEE------EHHHHHHHHHHHHHHh---------hhHHHHHHHHh
Confidence 3558899999999999999999966 211111234455 3345666666555421 01233455555
Q ss_pred cCCcEEEe
Q 009534 248 RNTKFLIS 255 (532)
Q Consensus 248 ~~kr~LlV 255 (532)
+.-.+|++
T Consensus 205 ~~~dvLiI 212 (450)
T PRK14087 205 CQNDVLII 212 (450)
T ss_pred ccCCEEEE
Confidence 66666666
No 338
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.11 E-value=0.18 Score=54.78 Aligned_cols=46 Identities=20% Similarity=0.330 Sum_probs=39.1
Q ss_pred CcccccHHHHHHHHHHhccC-----CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEE-----PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~-----~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++++|.++.++++..++... ..+++.++|+.|+||||+++.+....
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999998653 34679999999999999999998766
No 339
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=92.10 E-value=0.12 Score=45.59 Aligned_cols=25 Identities=32% Similarity=0.604 Sum_probs=23.4
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+|++|+|+-|+|||||...+....
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L 26 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKL 26 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHH
Confidence 4789999999999999999999888
No 340
>PRK14738 gmk guanylate kinase; Provisional
Probab=92.09 E-value=0.14 Score=47.56 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=22.3
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHh
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNS 191 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~ 191 (532)
..++|.|+|+.|+|||||++.+...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 5788999999999999999999754
No 341
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=92.08 E-value=0.14 Score=45.74 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=21.3
Q ss_pred EEEEecCCCCcHHHHHHHHHHhc
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+|+|.|+.|+||||+|+.+.+..
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 78999999999999999998765
No 342
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.07 E-value=0.2 Score=47.12 Aligned_cols=35 Identities=26% Similarity=0.239 Sum_probs=27.4
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEE
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWE 205 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv 205 (532)
.-.+++|+|..|.|||||.+.+.... ....+.+++
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~----~~~~G~i~~ 59 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTLL----KPTSGRATV 59 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEE
Confidence 45789999999999999999998765 334555555
No 343
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=92.07 E-value=0.51 Score=49.66 Aligned_cols=25 Identities=40% Similarity=0.519 Sum_probs=22.8
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..-+-|+|..|+|||+|++++.+..
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~ 172 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYI 172 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3568899999999999999999988
No 344
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=92.03 E-value=0.15 Score=41.74 Aligned_cols=22 Identities=32% Similarity=0.297 Sum_probs=20.0
Q ss_pred ceEEEEecCCCCcHHHHHHHHH
Q 009534 168 VGIVGLYGMGGVGKTTLLTQIN 189 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~ 189 (532)
-..++|.|..|.|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4689999999999999999975
No 345
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=92.03 E-value=0.14 Score=47.18 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=20.8
Q ss_pred ceEEEEecCCCCcHHHHHHHHHH
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINN 190 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~ 190 (532)
..+|+++|+.|+||||.|+.+-+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 46899999999999999998866
No 346
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=92.03 E-value=0.13 Score=45.20 Aligned_cols=23 Identities=26% Similarity=0.600 Sum_probs=20.8
Q ss_pred EEEEecCCCCcHHHHHHHHHHhc
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++.|+|..|+||||+|+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998876
No 347
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=92.02 E-value=0.27 Score=45.19 Aligned_cols=44 Identities=20% Similarity=0.207 Sum_probs=32.8
Q ss_pred CcccccHHHHHHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++++|.+..+..+.-.... .+=+-++|..|+|||++|+.+-.-.
T Consensus 3 ~dI~GQe~aKrAL~iAAaG--~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG--GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC--C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred hhhcCcHHHHHHHHHHHcC--CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 4678988888777766654 3677899999999999999986543
No 348
>COG4240 Predicted kinase [General function prediction only]
Probab=92.02 E-value=0.94 Score=41.97 Aligned_cols=84 Identities=14% Similarity=0.012 Sum_probs=55.1
Q ss_pred CCceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhc----CCCCCCCCCCHHHHHH
Q 009534 166 EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQLGKIQESIAKKIG----LCNESWDSKSFDEKAQ 241 (532)
Q Consensus 166 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~----~~~~~~~~~~~~~~~~ 241 (532)
+++-+++|.|+-|.||||++-.++... ..+.. +.....++..-+-...-+-.++++.. ..+. ....++.-...
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L-~~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGl-pGTHD~tlgln 124 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLL-AAKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGL-PGTHDPTLGLN 124 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHH-HHhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCC-CCCCchHHHHH
Confidence 468899999999999999999999988 33332 46666665554444444445555531 1111 15566666777
Q ss_pred HHHHHhcCCcE
Q 009534 242 EIFKTMRNTKF 252 (532)
Q Consensus 242 ~l~~~L~~kr~ 252 (532)
.+....+++.-
T Consensus 125 VLnai~~g~~~ 135 (300)
T COG4240 125 VLNAIARGGPT 135 (300)
T ss_pred HHHHHhcCCCC
Confidence 77777777654
No 349
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=92.02 E-value=0.68 Score=47.99 Aligned_cols=86 Identities=15% Similarity=0.160 Sum_probs=45.6
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCC--HHHHHHHHHHHhcCCCCCC-CCCCHHHHHHHH
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQ--LGKIQESIAKKIGLCNESW-DSKSFDEKAQEI 243 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~--~~~l~~~i~~~l~~~~~~~-~~~~~~~~~~~l 243 (532)
.+.++.++|..|+||||.|..+.... ..+..+ .+.-|+.. .+. ..+-+.......+.+.... ...++.+.....
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l-~~~~g~-kV~lV~~D-~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~a 174 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYL-KKKQGK-KVLLVACD-LYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRA 174 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH-HHhCCC-eEEEEecc-ccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHH
Confidence 46899999999999999998887765 111222 33444432 222 2222334445554432111 223444554444
Q ss_pred HHHh--cCCcEEEe
Q 009534 244 FKTM--RNTKFLIS 255 (532)
Q Consensus 244 ~~~L--~~kr~LlV 255 (532)
.+.. .+..++||
T Consensus 175 l~~~~~~~~DvVII 188 (428)
T TIGR00959 175 LEYAKENGFDVVIV 188 (428)
T ss_pred HHHHHhcCCCEEEE
Confidence 3333 33456777
No 350
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=92.00 E-value=0.21 Score=49.52 Aligned_cols=24 Identities=38% Similarity=0.526 Sum_probs=20.4
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+++-+.|-|||||||+|-+..-..
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~ 25 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALAL 25 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHH
Confidence 678899999999999997765555
No 351
>PRK09354 recA recombinase A; Provisional
Probab=91.95 E-value=0.4 Score=48.09 Aligned_cols=75 Identities=20% Similarity=0.132 Sum_probs=48.0
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCC---CCCCCHHHHHHHH
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQLGKIQESIAKKIGLCNES---WDSKSFDEKAQEI 243 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~---~~~~~~~~~~~~l 243 (532)
.-+++-|+|+.|+||||||.++..... ..-..++||+....++.. .++.++...+. ....+.++....+
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~---~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQ---KAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 467888999999999999999876652 334678999887776653 34444432211 1233455555555
Q ss_pred HHHhcC
Q 009534 244 FKTMRN 249 (532)
Q Consensus 244 ~~~L~~ 249 (532)
...++.
T Consensus 131 ~~li~s 136 (349)
T PRK09354 131 DTLVRS 136 (349)
T ss_pred HHHhhc
Confidence 555543
No 352
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=91.93 E-value=0.55 Score=49.14 Aligned_cols=37 Identities=35% Similarity=0.451 Sum_probs=27.7
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhccCCCCCCC-eEEEEE
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFD-FVIWEV 206 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~-~~~wv~ 206 (532)
..-+-|+|..|+|||+|++++.+... +.+.+ .+.|++
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~--~~~~~~~v~yi~ 167 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVV--QNEPDLRVMYIT 167 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH--HhCCCCeEEEEE
Confidence 34689999999999999999999873 22222 456664
No 353
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=91.92 E-value=0.22 Score=45.81 Aligned_cols=36 Identities=28% Similarity=0.155 Sum_probs=27.8
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEE
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEV 206 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~ 206 (532)
+-.|++|+|+.|.|||||.+.+..-. ..=.+.+||.
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE----~~~~G~I~i~ 62 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLE----EPDSGSITVD 62 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCc----CCCCceEEEC
Confidence 45789999999999999999996544 2224677774
No 354
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=91.89 E-value=0.14 Score=40.47 Aligned_cols=23 Identities=39% Similarity=0.707 Sum_probs=20.8
Q ss_pred EEEEecCCCCcHHHHHHHHHHhc
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++.+.|.+|+||||++..+....
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l 23 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAAL 23 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999998887
No 355
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=91.89 E-value=0.14 Score=47.87 Aligned_cols=24 Identities=29% Similarity=0.700 Sum_probs=21.4
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++|+|.|-||+||||++..+....
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~l 24 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAAL 24 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHH
Confidence 578999999999999998887777
No 356
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.89 E-value=0.57 Score=51.10 Aligned_cols=46 Identities=22% Similarity=0.279 Sum_probs=39.5
Q ss_pred CcccccHHHHHHHHHHhccCCc-eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPV-GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++++|.+..++.+.+++..+++ +.+-++|+.|+||||+|+.+....
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l 63 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTI 63 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999988765 557899999999999999887765
No 357
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=91.88 E-value=0.2 Score=46.63 Aligned_cols=26 Identities=35% Similarity=0.438 Sum_probs=23.1
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-.+++|+|..|.|||||++.+....
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998765
No 358
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=91.87 E-value=0.35 Score=45.27 Aligned_cols=45 Identities=29% Similarity=0.389 Sum_probs=36.0
Q ss_pred cccccHHHHHHHHHHhcc-------------CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 148 TVVGLQSTLDRVWRCLTE-------------EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 148 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++-|.+-.++++.+...- +.++=+-.+|++|.|||-||++|.+.-
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t 213 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT 213 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc
Confidence 456788888888777632 356677889999999999999999876
No 359
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=91.87 E-value=0.15 Score=46.10 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=22.3
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.++.|+|..|.||||+++.+....
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l 27 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALF 27 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 578999999999999999999877
No 360
>PRK13768 GTPase; Provisional
Probab=91.85 E-value=0.15 Score=49.02 Aligned_cols=24 Identities=38% Similarity=0.477 Sum_probs=21.5
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.++.|.|.||+||||++..+....
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l 26 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWL 26 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHH
Confidence 578999999999999999887776
No 361
>PLN02165 adenylate isopentenyltransferase
Probab=91.83 E-value=0.16 Score=50.34 Aligned_cols=30 Identities=23% Similarity=0.339 Sum_probs=25.7
Q ss_pred hccCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 163 LTEEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 163 L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+.+..-.++.|+|+.|+||||||..+....
T Consensus 38 ~~~~~g~iivIiGPTGSGKStLA~~LA~~l 67 (334)
T PLN02165 38 EQNCKDKVVVIMGATGSGKSRLSVDLATRF 67 (334)
T ss_pred ccCCCCCEEEEECCCCCcHHHHHHHHHHHc
Confidence 345566799999999999999999998876
No 362
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=91.82 E-value=0.25 Score=49.11 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=23.6
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
....|.++|+.|+||||+++.+....
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999998876
No 363
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=91.82 E-value=0.17 Score=44.87 Aligned_cols=24 Identities=38% Similarity=0.714 Sum_probs=22.5
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++++|+|..|+|||||+..+....
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l 25 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPAL 25 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999887
No 364
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=91.80 E-value=0.14 Score=52.58 Aligned_cols=27 Identities=33% Similarity=0.441 Sum_probs=24.5
Q ss_pred CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 166 EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 166 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-++.|+|+|..|+|||||++.+....
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~~~ 243 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLANIF 243 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998875
No 365
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=91.80 E-value=0.068 Score=55.63 Aligned_cols=103 Identities=17% Similarity=0.192 Sum_probs=58.7
Q ss_pred hcCCccCceeeEEeccchhHHHhhcCCcccccccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeeccc
Q 009534 290 LLGLKHLNVLTITLHSFAALQRLLTYPSLQSIVSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYA 369 (532)
Q Consensus 290 l~~L~~L~~L~i~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~ 369 (532)
+..+.+|..|++.-. .++.+... ..+|++|+.|++++ +.++.+.. +..++.|+.|++.+. .+..+..
T Consensus 91 l~~~~~l~~l~l~~n---~i~~i~~~---l~~~~~L~~L~ls~-N~I~~i~~--l~~l~~L~~L~l~~N-~i~~~~~--- 157 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDN---KIEKIENL---LSSLVNLQVLDLSF-NKITKLEG--LSTLTLLKELNLSGN-LISDISG--- 157 (414)
T ss_pred cccccceeeeecccc---chhhcccc---hhhhhcchheeccc-cccccccc--hhhccchhhheeccC-cchhccC---
Confidence 455566666664322 22222221 23456677777777 34665543 455666777777764 3333322
Q ss_pred CCccccccccCCCCCccEEEEeCCccccCCc--hhcCCCcceeeecc
Q 009534 370 GGEVKRIRETHGFFSLHKVSIWGSKLRHVTW--LILAPNLKLIQMYD 414 (532)
Q Consensus 370 ~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~--l~~l~~L~~L~l~~ 414 (532)
...+++|+.+++.+|.++.+.. +..+++|+.+.+.+
T Consensus 158 ---------~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~ 195 (414)
T KOG0531|consen 158 ---------LESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGG 195 (414)
T ss_pred ---------CccchhhhcccCCcchhhhhhhhhhhhccchHHHhccC
Confidence 1136777777777776666655 46777777777754
No 366
>PHA02244 ATPase-like protein
Probab=91.79 E-value=0.37 Score=48.44 Aligned_cols=37 Identities=22% Similarity=0.223 Sum_probs=26.9
Q ss_pred HHHHHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 154 STLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 154 ~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.....+.+++..+ .-|-++|+.|+|||++|+++....
T Consensus 107 ~~~~ri~r~l~~~--~PVLL~GppGtGKTtLA~aLA~~l 143 (383)
T PHA02244 107 YETADIAKIVNAN--IPVFLKGGAGSGKNHIAEQIAEAL 143 (383)
T ss_pred HHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHh
Confidence 3344555555443 235679999999999999999876
No 367
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=91.75 E-value=0.35 Score=48.36 Aligned_cols=46 Identities=22% Similarity=0.292 Sum_probs=34.9
Q ss_pred CcccccHHHHHH---HHHHhccCC--ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDR---VWRCLTEEP--VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~---l~~~L~~~~--~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..+||..+..+. +++++..++ -+.|-+.|++|.|||+||..+....
T Consensus 24 ~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eL 74 (398)
T PF06068_consen 24 DGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKEL 74 (398)
T ss_dssp TTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHC
T ss_pred ccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHh
Confidence 578998765544 677777764 6788899999999999999999998
No 368
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.72 E-value=0.2 Score=46.72 Aligned_cols=32 Identities=31% Similarity=0.334 Sum_probs=25.6
Q ss_pred EEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEE
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWE 205 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv 205 (532)
+++|+|..|.|||||++.+..-. ....+.+++
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~ 58 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT----PPSSGTIRI 58 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC----CCCccEEEE
Confidence 89999999999999999998765 233455555
No 369
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=91.72 E-value=0.24 Score=44.85 Aligned_cols=26 Identities=27% Similarity=0.511 Sum_probs=23.0
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-.+++|+|..|.|||||.+.+..-.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 45699999999999999999998765
No 370
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=91.72 E-value=0.15 Score=52.60 Aligned_cols=46 Identities=20% Similarity=0.205 Sum_probs=35.4
Q ss_pred CcccccHHHHHHHHHHhcc-------C---------CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTE-------E---------PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~-------~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..++|.+..++.+...+.+ . .-.-+-++|+.|+|||++|+.+....
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 4579999988887665521 0 12457899999999999999998765
No 371
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.71 E-value=0.23 Score=46.42 Aligned_cols=26 Identities=35% Similarity=0.609 Sum_probs=23.4
Q ss_pred CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 166 EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 166 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.. .+++|+|..|.|||||++.+..-.
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCCC
Confidence 36 899999999999999999998765
No 372
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=91.71 E-value=0.15 Score=49.48 Aligned_cols=35 Identities=20% Similarity=0.222 Sum_probs=27.5
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEe
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVV 207 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v 207 (532)
++|+|+|..|+|||||+..+.... ..++ .++-|..
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L-~~~G---~V~~IKh 36 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRL-SGRG---RVGTVKH 36 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH-HhCC---CEEEEEE
Confidence 589999999999999999999988 3332 3555543
No 373
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=91.70 E-value=1.5 Score=42.55 Aligned_cols=53 Identities=17% Similarity=0.099 Sum_probs=37.3
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQLGKIQESIAKKI 224 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l 224 (532)
-.++.|.|..|+||||++..+..... ..+=..++|+++.. ...++...+...+
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~--~~~g~~vl~iS~E~--~~~~~~~r~~~~~ 82 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLI--TQHGVRVGTISLEE--PVVRTARRLLGQY 82 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH--HhcCceEEEEEccc--CHHHHHHHHHHHH
Confidence 45788999999999999999877652 22235688887655 4455666655543
No 374
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.70 E-value=0.23 Score=46.68 Aligned_cols=26 Identities=38% Similarity=0.414 Sum_probs=23.0
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-.+++|+|..|.|||||++.+..-.
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 29 EGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998765
No 375
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=91.70 E-value=0.13 Score=49.40 Aligned_cols=23 Identities=30% Similarity=0.612 Sum_probs=20.7
Q ss_pred EEEEecCCCCcHHHHHHHHHHhc
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+|.++|++|+||||+|+.+....
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l 23 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKL 23 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 37789999999999999998876
No 376
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=91.70 E-value=0.16 Score=45.61 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=21.4
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+.|.|+|+.|+||||+|+.+.+..
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~l 26 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQAL 26 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 357889999999999999999876
No 377
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=91.69 E-value=0.54 Score=48.05 Aligned_cols=26 Identities=35% Similarity=0.574 Sum_probs=23.3
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+-+|+|.|..|.|||||++.+..-.
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL 236 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLF 236 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999997655
No 378
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=91.68 E-value=0.3 Score=45.11 Aligned_cols=24 Identities=29% Similarity=0.492 Sum_probs=21.8
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..++|.|+.|.||||+.+.+.+..
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~l 25 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRAL 25 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhh
Confidence 368999999999999999999876
No 379
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.67 E-value=0.24 Score=53.93 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=39.7
Q ss_pred CcccccHHHHHHHHHHhccCCc-eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPV-GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+++|.++-++.+.+++..++. +-+-++|..|+||||+|+.+....
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L 62 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSL 62 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHh
Confidence 3579999999999999987653 567789999999999999998887
No 380
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=91.67 E-value=0.15 Score=42.47 Aligned_cols=21 Identities=33% Similarity=0.601 Sum_probs=19.7
Q ss_pred EEEecCCCCcHHHHHHHHHHh
Q 009534 171 VGLYGMGGVGKTTLLTQINNS 191 (532)
Q Consensus 171 i~I~G~gGiGKTtLa~~v~~~ 191 (532)
|+|+|+.|+|||||.+.+.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999985
No 381
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=91.67 E-value=0.71 Score=46.11 Aligned_cols=57 Identities=21% Similarity=0.347 Sum_probs=41.1
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCC----CCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNN----FDFVIWEVVSRDLQLGKIQESIAKKIG 225 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----F~~~~wv~v~~~~~~~~l~~~i~~~l~ 225 (532)
.-.++-|+|..|+|||+++..+.-.. ..... =..++||+....++...+.+. ++.++
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~-~~~~~~gg~~~~~~yi~te~~f~~~rl~~~-~~~~g 161 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNV-QLPEEKGGLEGKAVYIDTEGTFRPERIEQM-AEALG 161 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHh-ccccccCCCCceEEEEeCCCCcCHHHHHHH-HHHcC
Confidence 46788899999999999999987654 21111 147899999888888776544 34443
No 382
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=91.66 E-value=0.15 Score=45.11 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=19.9
Q ss_pred EEEEecCCCCcHHHHHHHHHHhc
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
-|.|+|.+|+|||||++++.+..
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~ 24 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGH 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999987654
No 383
>PLN02348 phosphoribulokinase
Probab=91.65 E-value=0.18 Score=51.00 Aligned_cols=27 Identities=26% Similarity=0.581 Sum_probs=24.9
Q ss_pred CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 166 EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 166 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++..+|+|.|..|.||||+|+.+.+..
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~L 73 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVF 73 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999887
No 384
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=91.64 E-value=0.27 Score=50.01 Aligned_cols=47 Identities=17% Similarity=0.188 Sum_probs=40.5
Q ss_pred CcccccHHHHHHHHHHhccCC-ceEEEEecCCCCcHHHHHHHHHHhcc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEP-VGIVGLYGMGGVGKTTLLTQINNSFL 193 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~ 193 (532)
.+++|.++.++.+.+.+..++ .+.+-++|+.|+||+|+|..+.....
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Ll 66 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLL 66 (365)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 468999999999999998876 45688999999999999999877764
No 385
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=91.64 E-value=0.14 Score=45.68 Aligned_cols=23 Identities=43% Similarity=0.509 Sum_probs=20.2
Q ss_pred EEEEecCCCCcHHHHHHHHHHhc
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
-|.|+|.+|+|||||++.+.+..
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~ 24 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKK 24 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999987764
No 386
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=91.64 E-value=0.34 Score=45.62 Aligned_cols=53 Identities=26% Similarity=0.404 Sum_probs=40.8
Q ss_pred CCCCCCC--CcccccHHHHHHHHHHhcc-------------CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 140 VDERPLP--PTVVGLQSTLDRVWRCLTE-------------EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 140 ~~~~~~~--~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+++.|++ +++-|.+..++++++.+.- ..++=+-.+|++|.|||-+|++...+-
T Consensus 162 vDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT 229 (424)
T KOG0652|consen 162 VDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT 229 (424)
T ss_pred eccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc
Confidence 4445543 5678899999999998742 135567789999999999999987765
No 387
>PLN02796 D-glycerate 3-kinase
Probab=91.61 E-value=0.18 Score=50.26 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=23.8
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+-+|+|.|..|.|||||++.+....
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL 124 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLF 124 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHh
Confidence 46789999999999999999999877
No 388
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=91.61 E-value=0.67 Score=47.32 Aligned_cols=68 Identities=16% Similarity=0.245 Sum_probs=51.7
Q ss_pred cHHHHHHHHHHhccCCceEEEEecCCCCcHHHHH-HHHHHhccCCCCCCCeEEEEEeCC---CCCHHHHHHHHHHHhcC
Q 009534 152 LQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLL-TQINNSFLHTPNNFDFVIWEVVSR---DLQLGKIQESIAKKIGL 226 (532)
Q Consensus 152 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~F~~~~wv~v~~---~~~~~~l~~~i~~~l~~ 226 (532)
|.+.++.+-.||.+..-..|.|.|+-|.||+.|+ .++..+. +.+..+++.+ ..+-..+.+.++.++|=
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r-------~~vL~IDC~~i~~ar~D~~~I~~lA~qvGY 72 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDR-------KNVLVIDCDQIVKARGDAAFIKNLASQVGY 72 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCC-------CCEEEEEChHhhhccChHHHHHHHHHhcCC
Confidence 5677899999999988889999999999999999 7776655 1267776443 23456677777777753
No 389
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=91.61 E-value=0.44 Score=47.59 Aligned_cols=36 Identities=22% Similarity=0.419 Sum_probs=28.8
Q ss_pred HHHHHHhc--cCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 157 DRVWRCLT--EEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 157 ~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..+++.+. .++..+|+|.|..|+||||++..+....
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l 80 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHL 80 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34555553 3578899999999999999999987776
No 390
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=91.60 E-value=0.25 Score=43.05 Aligned_cols=26 Identities=42% Similarity=0.682 Sum_probs=23.0
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-.+++|+|..|.|||||++.+....
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 45789999999999999999997765
No 391
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=91.59 E-value=0.23 Score=46.64 Aligned_cols=26 Identities=38% Similarity=0.576 Sum_probs=23.1
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-.+++|+|..|.|||||++.+..-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998865
No 392
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=91.59 E-value=0.2 Score=56.10 Aligned_cols=46 Identities=30% Similarity=0.417 Sum_probs=37.1
Q ss_pred CcccccHHHHHHHHHHhcc-------------CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTE-------------EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+++.|.++.++.+.+++.. ...+-+-++|+.|+|||++|+.+.+..
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~ 236 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA 236 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh
Confidence 3578999999888887632 134567899999999999999999876
No 393
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=91.59 E-value=0.23 Score=46.64 Aligned_cols=35 Identities=29% Similarity=0.246 Sum_probs=27.2
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEE
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWE 205 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv 205 (532)
.-.+++|+|..|.|||||.+.+.... ....+.+++
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~~----~~~~G~i~~ 64 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGLD----NPTSGEVLF 64 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEE
Confidence 45689999999999999999998765 233455554
No 394
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=91.58 E-value=0.24 Score=44.31 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=22.2
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHh
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNS 191 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~ 191 (532)
+...++|+|..|+|||||.+.+...
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcC
Confidence 4566999999999999999999876
No 395
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=91.58 E-value=0.24 Score=47.12 Aligned_cols=26 Identities=35% Similarity=0.641 Sum_probs=23.0
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-.+++|+|..|.|||||++.+....
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45789999999999999999998765
No 396
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=91.57 E-value=0.15 Score=46.85 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.6
Q ss_pred EEEEecCCCCcHHHHHHHHHHhc
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+|+|.|+.|+||||+++.+.+..
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~ 23 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHL 23 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998764
No 397
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=91.57 E-value=0.15 Score=45.07 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=19.8
Q ss_pred EEEecCCCCcHHHHHHHHHHhc
Q 009534 171 VGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 171 i~I~G~gGiGKTtLa~~v~~~~ 192 (532)
|.++|.+|+|||||+.++.+..
T Consensus 3 i~~vG~~~vGKTsli~~l~~~~ 24 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEGR 24 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7899999999999999988764
No 398
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=91.57 E-value=0.3 Score=51.94 Aligned_cols=54 Identities=26% Similarity=0.394 Sum_probs=42.2
Q ss_pred cccccHHHHHHHHHHhccC-----CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEE
Q 009534 148 TVVGLQSTLDRVWRCLTEE-----PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEV 206 (532)
Q Consensus 148 ~~vGr~~~~~~l~~~L~~~-----~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~ 206 (532)
+++--..-++++.+||... ..+++-+.|+.|+||||.++.+.+.. .|+.+-|..
T Consensus 20 eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el-----g~~v~Ew~n 78 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL-----GFEVQEWIN 78 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh-----CCeeEEecC
Confidence 3444556778888888642 36799999999999999999999876 477788874
No 399
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=91.56 E-value=1.7 Score=44.13 Aligned_cols=98 Identities=21% Similarity=0.227 Sum_probs=54.8
Q ss_pred HHHHHHHHHhccC----CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCC-CHHHHHHHHHHHhcCCC
Q 009534 154 STLDRVWRCLTEE----PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDL-QLGKIQESIAKKIGLCN 228 (532)
Q Consensus 154 ~~~~~l~~~L~~~----~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~-~~~~l~~~i~~~l~~~~ 228 (532)
+....+..++.++ +-++|.++|+-||||||-.-.+..+. .....=..+..|+..... +..+=++.-++-++.+-
T Consensus 185 ~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~-~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~ 263 (407)
T COG1419 185 EKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARY-VMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPL 263 (407)
T ss_pred HHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHH-HhhccCcceEEEEeccchhhHHHHHHHHHHHhCCce
Confidence 3344445554443 48999999999999987555554444 211223456667654432 22222333344444433
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCcEEEe
Q 009534 229 ESWDSKSFDEKAQEIFKTMRNTKFLIS 255 (532)
Q Consensus 229 ~~~~~~~~~~~~~~l~~~L~~kr~LlV 255 (532)
. -..+..++...+ ..+++.++.+|
T Consensus 264 ~--vv~~~~el~~ai-~~l~~~d~ILV 287 (407)
T COG1419 264 E--VVYSPKELAEAI-EALRDCDVILV 287 (407)
T ss_pred E--EecCHHHHHHHH-HHhhcCCEEEE
Confidence 1 344555555444 45678899999
No 400
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=91.56 E-value=0.24 Score=45.94 Aligned_cols=26 Identities=35% Similarity=0.460 Sum_probs=23.1
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-.+++|+|..|.|||||.+.+..-.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35689999999999999999998865
No 401
>PRK13973 thymidylate kinase; Provisional
Probab=91.49 E-value=0.49 Score=44.24 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=22.7
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..|+|-|+.|+||||+++.++...
T Consensus 4 ~~IviEG~dGsGKtTq~~~l~~~l 27 (213)
T PRK13973 4 RFITFEGGEGAGKSTQIRLLAERL 27 (213)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 578999999999999999999998
No 402
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=91.47 E-value=0.26 Score=51.13 Aligned_cols=46 Identities=26% Similarity=0.304 Sum_probs=35.5
Q ss_pred CcccccHH---HHHHHHHHhccC--------C-ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQS---TLDRVWRCLTEE--------P-VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~---~~~~l~~~L~~~--------~-~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+++-|.|+ ++++|++.|.++ + ++=|-.+|++|.|||-||++|....
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 45678774 566677788763 2 4557789999999999999998876
No 403
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=91.47 E-value=0.19 Score=50.26 Aligned_cols=26 Identities=23% Similarity=0.325 Sum_probs=24.6
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
-++.++|||+.|+|||.+|++++++.
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 57899999999999999999999988
No 404
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=91.47 E-value=0.15 Score=46.22 Aligned_cols=21 Identities=38% Similarity=0.594 Sum_probs=19.4
Q ss_pred EEEEecCCCCcHHHHHHHHHH
Q 009534 170 IVGLYGMGGVGKTTLLTQINN 190 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~ 190 (532)
+|+|.|+.|+||||+++.+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 405
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=91.44 E-value=0.17 Score=48.19 Aligned_cols=20 Identities=30% Similarity=0.486 Sum_probs=18.2
Q ss_pred EecCCCCcHHHHHHHHHHhc
Q 009534 173 LYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 173 I~G~gGiGKTtLa~~v~~~~ 192 (532)
|+|++|+||||+++.+.+..
T Consensus 1 ViGpaGSGKTT~~~~~~~~~ 20 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWL 20 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHH
Confidence 68999999999999999988
No 406
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=91.43 E-value=0.25 Score=45.53 Aligned_cols=35 Identities=23% Similarity=0.187 Sum_probs=27.4
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEE
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWE 205 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv 205 (532)
.-.+++|+|..|.|||||.+.+.... ....+.+++
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~ 59 (198)
T TIGR01189 25 AGEALQVTGPNGIGKTTLLRILAGLL----RPDSGEVRW 59 (198)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCccEEEE
Confidence 45789999999999999999998865 233455554
No 407
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.42 E-value=0.26 Score=45.51 Aligned_cols=36 Identities=36% Similarity=0.337 Sum_probs=28.2
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEE
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEV 206 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~ 206 (532)
+-.+++|+|..|.|||||.+.+.... ....+.+++.
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~v~~~ 61 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGLL----NPEKGEILFE 61 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC----CCCCeeEEEC
Confidence 45789999999999999999998765 3345566653
No 408
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.41 E-value=0.31 Score=51.50 Aligned_cols=46 Identities=17% Similarity=0.206 Sum_probs=39.0
Q ss_pred CcccccHHHHHHHHHHhccCC-ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEP-VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+++|.+.-++.+.+++..++ .+..-++|+.|+||||+|+.+....
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L 62 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVL 62 (486)
T ss_pred HHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 357999999999999998765 4456789999999999999988765
No 409
>PRK08939 primosomal protein DnaI; Reviewed
Probab=91.39 E-value=0.85 Score=45.19 Aligned_cols=85 Identities=22% Similarity=0.214 Sum_probs=51.4
Q ss_pred ccHHHHHHHHHHhcc----CCceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcC
Q 009534 151 GLQSTLDRVWRCLTE----EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQLGKIQESIAKKIGL 226 (532)
Q Consensus 151 Gr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~ 226 (532)
++....+...+++.. ...+-+-++|..|+|||.||.++.+... +.. ..+.+++++ .+...+......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~--~~g-~~v~~~~~~------~l~~~lk~~~~~ 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA--KKG-VSSTLLHFP------EFIRELKNSISD 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH--HcC-CCEEEEEHH------HHHHHHHHHHhc
Confidence 444445555555542 1345688999999999999999999983 223 345566543 455555544421
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCcEEEe
Q 009534 227 CNESWDSKSFDEKAQEIFKTMRNTKFLIS 255 (532)
Q Consensus 227 ~~~~~~~~~~~~~~~~l~~~L~~kr~LlV 255 (532)
.+. ....+.++.-.+|++
T Consensus 206 -------~~~----~~~l~~l~~~dlLiI 223 (306)
T PRK08939 206 -------GSV----KEKIDAVKEAPVLML 223 (306)
T ss_pred -------CcH----HHHHHHhcCCCEEEE
Confidence 111 223345667777777
No 410
>PRK10867 signal recognition particle protein; Provisional
Probab=91.39 E-value=0.85 Score=47.34 Aligned_cols=86 Identities=15% Similarity=0.190 Sum_probs=46.7
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCH--HHHHHHHHHHhcCCCCCC-CCCCHHHHHHHH
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQL--GKIQESIAKKIGLCNESW-DSKSFDEKAQEI 243 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~~--~~l~~~i~~~l~~~~~~~-~~~~~~~~~~~l 243 (532)
...+|.++|..|+||||.+..+.... ..+. -..+..|+.. .+.. .+-++...+..+.+.... ...++.......
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l-~~~~-G~kV~lV~~D-~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a 175 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYL-KKKK-KKKVLLVAAD-VYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAA 175 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH-HHhc-CCcEEEEEcc-ccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHH
Confidence 47899999999999999888887766 2111 1234444432 2322 222334455555432111 223455555444
Q ss_pred HHHh--cCCcEEEe
Q 009534 244 FKTM--RNTKFLIS 255 (532)
Q Consensus 244 ~~~L--~~kr~LlV 255 (532)
.+.. .+..++||
T Consensus 176 ~~~a~~~~~DvVII 189 (433)
T PRK10867 176 LEEAKENGYDVVIV 189 (433)
T ss_pred HHHHHhcCCCEEEE
Confidence 4433 34457777
No 411
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=91.38 E-value=0.26 Score=46.58 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=23.4
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-.+++|+|..|.|||||++.+..-.
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 45799999999999999999998765
No 412
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=91.38 E-value=0.26 Score=45.99 Aligned_cols=26 Identities=38% Similarity=0.333 Sum_probs=22.9
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-.+++|.|..|.|||||++.+....
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 25 DGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998765
No 413
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=91.37 E-value=0.27 Score=45.64 Aligned_cols=25 Identities=32% Similarity=0.348 Sum_probs=22.6
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
-.+++|+|..|.|||||.+.+....
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 24 GKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999998765
No 414
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=91.33 E-value=0.17 Score=49.37 Aligned_cols=25 Identities=28% Similarity=0.650 Sum_probs=21.9
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhcc
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSFL 193 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~~ 193 (532)
++|+|.|-|||||||+|..+.....
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~La 26 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAALS 26 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH
Confidence 5788889999999999999888773
No 415
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=91.32 E-value=0.17 Score=46.29 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=20.2
Q ss_pred EEEecCCCCcHHHHHHHHHHhc
Q 009534 171 VGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 171 i~I~G~gGiGKTtLa~~v~~~~ 192 (532)
|.|.|+.|+||||+|+.+....
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6899999999999999998875
No 416
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.30 E-value=0.26 Score=46.85 Aligned_cols=26 Identities=35% Similarity=0.459 Sum_probs=23.0
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-.+++|+|..|.|||||++.+....
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998765
No 417
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=91.30 E-value=0.17 Score=49.48 Aligned_cols=25 Identities=32% Similarity=0.615 Sum_probs=22.1
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhcc
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSFL 193 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~~ 193 (532)
++|+|+|-|||||||+|..+.....
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La 26 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALA 26 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHH
Confidence 5789999999999999999888773
No 418
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=91.30 E-value=0.21 Score=43.09 Aligned_cols=43 Identities=26% Similarity=0.335 Sum_probs=30.8
Q ss_pred cccHHHHHHHHHHhcc--CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 150 VGLQSTLDRVWRCLTE--EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 150 vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
||.-..++++.+.+.. ....-|-|+|..|+||+++|+.++...
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 4555566666666543 345567899999999999999999876
No 419
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.28 E-value=0.28 Score=44.15 Aligned_cols=26 Identities=42% Similarity=0.529 Sum_probs=23.0
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-.+++|+|..|.|||||.+.+....
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 35689999999999999999998765
No 420
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=91.28 E-value=0.25 Score=47.15 Aligned_cols=26 Identities=42% Similarity=0.604 Sum_probs=22.9
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-.+++|+|..|.|||||++.+..-.
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 27 PGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34689999999999999999998765
No 421
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=91.26 E-value=0.21 Score=44.47 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=21.1
Q ss_pred EEEEecCCCCcHHHHHHHHHHhc
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
-|..+||.|+||||+.+.+....
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L 26 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKAL 26 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHHc
Confidence 47789999999999999999887
No 422
>PRK13236 nitrogenase reductase; Reviewed
Probab=91.24 E-value=0.2 Score=49.51 Aligned_cols=28 Identities=29% Similarity=0.601 Sum_probs=24.7
Q ss_pred cCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 165 EEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 165 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+++.+++++.|-|||||||.|..+..-.
T Consensus 3 ~~~~~~~~~~GKGGVGKTt~a~NLA~~L 30 (296)
T PRK13236 3 DENIRQIAFYGKGGIGKSTTSQNTLAAM 30 (296)
T ss_pred CcCceEEEEECCCcCCHHHHHHHHHHHH
Confidence 4568999999999999999998887777
No 423
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=91.23 E-value=0.27 Score=55.23 Aligned_cols=46 Identities=20% Similarity=0.260 Sum_probs=40.0
Q ss_pred CcccccHHHHHHHHHHhccCCc-eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPV-GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.++||.+..++.|.+++..+++ +.+-++|..|+||||+|+.+....
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L 61 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSL 61 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999988765 467899999999999999998777
No 424
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.23 E-value=0.75 Score=49.06 Aligned_cols=51 Identities=29% Similarity=0.316 Sum_probs=36.2
Q ss_pred CcccccHHHHHHHHHHhcc-------------CCceEEEEecCCCCcHHHHHHHHHHhccCCCCCCC
Q 009534 147 PTVVGLQSTLDRVWRCLTE-------------EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFD 200 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~ 200 (532)
+++-|.++-+.++-+.+.- ...+=|-.+|++|.|||++|+++.+.. +.+|=
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~---~~nFl 497 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA---GMNFL 497 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh---cCCee
Confidence 4445566655555544432 256778889999999999999999987 45663
No 425
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=91.20 E-value=0.26 Score=46.17 Aligned_cols=35 Identities=29% Similarity=0.301 Sum_probs=27.4
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEE
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWE 205 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv 205 (532)
.-.+++|+|..|.|||||.+.+..-. ....+.+++
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~ 64 (218)
T cd03266 30 PGEVTGLLGPNGAGKTTTLRMLAGLL----EPDAGFATV 64 (218)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc----CCCCceEEE
Confidence 34689999999999999999998765 234555555
No 426
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=91.20 E-value=0.18 Score=48.17 Aligned_cols=26 Identities=35% Similarity=0.529 Sum_probs=23.4
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 45789999999999999999998865
No 427
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=91.19 E-value=0.31 Score=53.44 Aligned_cols=46 Identities=17% Similarity=0.260 Sum_probs=39.3
Q ss_pred CcccccHHHHHHHHHHhccCC-ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEP-VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+++|.+..++.+.+++..++ .+.+-++|+.|+||||+|+.+....
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~L 64 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANAL 64 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 357999999999999998765 4566789999999999999997765
No 428
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.17 E-value=0.28 Score=45.79 Aligned_cols=26 Identities=42% Similarity=0.528 Sum_probs=22.8
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-.+++|+|..|.|||||++.+..-.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998754
No 429
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=91.16 E-value=0.33 Score=48.04 Aligned_cols=27 Identities=33% Similarity=0.511 Sum_probs=24.3
Q ss_pred CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 166 EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 166 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+...+|+|.|.+|+||||++..+....
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~ 58 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMEL 58 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999988876
No 430
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=91.16 E-value=0.28 Score=46.53 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=23.1
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-.+++|+|..|.|||||++.+..-.
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 34 EGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999998865
No 431
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=91.16 E-value=0.48 Score=53.11 Aligned_cols=46 Identities=28% Similarity=0.497 Sum_probs=37.2
Q ss_pred CcccccHHHHHHHHHHhcc-------C--CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTE-------E--PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..++|.++.++.+.+.+.. . ...++-++|+.|+|||++|+.+....
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh
Confidence 4578988888888888753 1 23467899999999999999998876
No 432
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.14 E-value=0.32 Score=52.75 Aligned_cols=46 Identities=17% Similarity=0.252 Sum_probs=39.8
Q ss_pred CcccccHHHHHHHHHHhccCCc-eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPV-GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++++|.+.-++.+.+++..+++ +.+-++|..|+||||+|+.+....
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l 62 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKAL 62 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999987765 567899999999999999988776
No 433
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.14 E-value=0.27 Score=46.82 Aligned_cols=26 Identities=42% Similarity=0.466 Sum_probs=23.1
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-.+++|+|..|.|||||++.+..-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 27 SGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998765
No 434
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=91.14 E-value=0.19 Score=43.44 Aligned_cols=24 Identities=38% Similarity=0.422 Sum_probs=21.1
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+.|-++|..|+|||||++++....
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC
Confidence 457899999999999999998766
No 435
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=91.13 E-value=0.18 Score=44.17 Aligned_cols=23 Identities=30% Similarity=0.739 Sum_probs=20.7
Q ss_pred EEEEecCCCCcHHHHHHHHHHhc
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++++.|.+|+||||++..+....
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~ 23 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITAL 23 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHH
Confidence 47899999999999999998776
No 436
>COG3903 Predicted ATPase [General function prediction only]
Probab=91.13 E-value=0.24 Score=49.86 Aligned_cols=80 Identities=24% Similarity=0.343 Sum_probs=57.2
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCC-CeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHH
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNF-DFVIWEVVSRDLQLGKIQESIAKKIGLCNESWDSKSFDEKAQEIFK 245 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F-~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 245 (532)
..+.++++|.|||||||++-.+.+ . ...| +.++++......+...+.-.....++.... +-+.....+..
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~---~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~-----~g~~~~~~~~~ 83 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-A---ASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ-----PGDSAVDTLVR 83 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-H---hhhcccceeeeeccccCchhHhHHHHHhhcccccc-----cchHHHHHHHH
Confidence 468899999999999999999988 4 3567 567777777776777776666666766431 11223445566
Q ss_pred HhcCCcEEEe
Q 009534 246 TMRNTKFLIS 255 (532)
Q Consensus 246 ~L~~kr~LlV 255 (532)
+..++|.++|
T Consensus 84 ~~~~rr~llv 93 (414)
T COG3903 84 RIGDRRALLV 93 (414)
T ss_pred HHhhhhHHHH
Confidence 7778888877
No 437
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=91.12 E-value=0.18 Score=49.04 Aligned_cols=42 Identities=19% Similarity=0.304 Sum_probs=29.4
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCH
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQL 213 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~~ 213 (532)
++|+|.|-||+||||++..+..... . ..+ .++-|+.....+.
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La-~-~G~-kVlliD~Dpq~n~ 43 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALA-E-MGK-KVMIVGCDPKADS 43 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHH-h-CCC-eEEEEEcCCCCCc
Confidence 5788889999999999999888773 1 222 4555665544333
No 438
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=91.11 E-value=0.2 Score=46.93 Aligned_cols=24 Identities=25% Similarity=0.494 Sum_probs=22.1
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+|+|.|+.|.||||+|+.+..+.
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~ 26 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKL 26 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998876
No 439
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=91.11 E-value=0.25 Score=46.17 Aligned_cols=26 Identities=35% Similarity=0.549 Sum_probs=22.9
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-.+++|+|..|.|||||++.+....
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 45689999999999999999998765
No 440
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.11 E-value=0.28 Score=45.52 Aligned_cols=26 Identities=31% Similarity=0.399 Sum_probs=23.2
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-.+++|+|..|.|||||.+.+....
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 26 AGELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998865
No 441
>PRK01184 hypothetical protein; Provisional
Probab=91.09 E-value=0.2 Score=45.62 Aligned_cols=23 Identities=35% Similarity=0.618 Sum_probs=18.7
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+|+++|+.|+||||+|+ +..+.
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~ 24 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREM 24 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHc
Confidence 479999999999999987 44433
No 442
>PRK14532 adenylate kinase; Provisional
Probab=91.08 E-value=0.19 Score=45.89 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=20.0
Q ss_pred EEEecCCCCcHHHHHHHHHHhc
Q 009534 171 VGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 171 i~I~G~gGiGKTtLa~~v~~~~ 192 (532)
|.+.|++|+||||+|+.+....
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6789999999999999998766
No 443
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.07 E-value=0.27 Score=46.87 Aligned_cols=26 Identities=42% Similarity=0.606 Sum_probs=22.9
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-.+++|+|..|.|||||++.+..-.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 26 PGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34689999999999999999998765
No 444
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=91.06 E-value=0.26 Score=46.27 Aligned_cols=26 Identities=46% Similarity=0.569 Sum_probs=22.9
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-.+++|+|..|.|||||++.+..-.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 45799999999999999999997765
No 445
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=91.01 E-value=0.29 Score=46.62 Aligned_cols=26 Identities=38% Similarity=0.534 Sum_probs=23.1
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-.+++|+|..|.|||||++.+....
T Consensus 46 ~Ge~~~i~G~NGsGKSTLl~~i~Gl~ 71 (236)
T cd03267 46 KGEIVGFIGPNGAGKTTTLKILSGLL 71 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45789999999999999999998765
No 446
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=91.00 E-value=0.31 Score=44.97 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=21.4
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.++.|.|+.|.||||++..+....
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999987766
No 447
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=91.00 E-value=0.29 Score=46.71 Aligned_cols=35 Identities=23% Similarity=0.108 Sum_probs=27.1
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEE
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWE 205 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv 205 (532)
.-.+++|.|..|.|||||++.+.... ....+.+++
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~ 61 (242)
T PRK11124 27 QGETLVLLGPSGAGKSSLLRVLNLLE----MPRSGTLNI 61 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEE
Confidence 45689999999999999999998765 233455554
No 448
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=90.99 E-value=0.29 Score=46.18 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=23.0
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-.+++|+|..|.|||||++.+....
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 32 AGEFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45689999999999999999998754
No 449
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=90.99 E-value=0.3 Score=52.54 Aligned_cols=46 Identities=15% Similarity=0.246 Sum_probs=39.9
Q ss_pred CcccccHHHHHHHHHHhccCCc-eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPV-GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+++|-+..++.+..++..++. +.+-++|+.|+||||+|+.+....
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L 62 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCL 62 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999987654 467899999999999999998876
No 450
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=90.98 E-value=0.29 Score=45.70 Aligned_cols=26 Identities=38% Similarity=0.514 Sum_probs=23.4
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-.+++|.|..|.|||||++.++...
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (213)
T TIGR01277 23 DGEIVAIMGPSGAGKSTLLNLIAGFI 48 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 45789999999999999999998865
No 451
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=90.98 E-value=0.48 Score=51.05 Aligned_cols=53 Identities=28% Similarity=0.328 Sum_probs=41.6
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQLGKIQESIAKKIG 225 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~ 225 (532)
.-+|.-.+|++|+||||||..|..+. .| .++-|..|.......+-..|...+.
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqa-----GY-sVvEINASDeRt~~~v~~kI~~avq 377 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQA-----GY-SVVEINASDERTAPMVKEKIENAVQ 377 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhc-----Cc-eEEEecccccccHHHHHHHHHHHHh
Confidence 45788999999999999999998876 23 3566777887777777777777654
No 452
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=90.97 E-value=0.28 Score=46.45 Aligned_cols=26 Identities=42% Similarity=0.485 Sum_probs=22.9
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-.+++|+|..|.|||||.+.+..-.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 25 QGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998765
No 453
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=90.97 E-value=0.29 Score=44.00 Aligned_cols=35 Identities=26% Similarity=0.284 Sum_probs=25.6
Q ss_pred HHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 158 RVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 158 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+.++........|.++|.+|+|||||...+....
T Consensus 5 ~~~~~~~~~~~~kv~~~G~~~~GKTsl~~~l~~~~ 39 (174)
T cd04153 5 SLWSLFFPRKEYKVIIVGLDNAGKTTILYQFLLGE 39 (174)
T ss_pred HHHHHhcCCCccEEEEECCCCCCHHHHHHHHccCC
Confidence 34455443345668899999999999999986543
No 454
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=90.97 E-value=0.27 Score=44.80 Aligned_cols=25 Identities=36% Similarity=0.458 Sum_probs=22.6
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+++.++|+.|+||+|+++.+....
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 4689999999999999999998875
No 455
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=90.97 E-value=0.38 Score=51.92 Aligned_cols=47 Identities=17% Similarity=0.237 Sum_probs=35.5
Q ss_pred CCcccccHHHHHHHHHHhcc--CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 146 PPTVVGLQSTLDRVWRCLTE--EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 146 ~~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++..+.|.+-.+.+.++... .+..+|.|+|+.|+||||+|+.+....
T Consensus 368 pP~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L 416 (568)
T PRK05537 368 IPEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKL 416 (568)
T ss_pred CChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHh
Confidence 34556777666655555533 255689999999999999999999887
No 456
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=90.95 E-value=1.1 Score=44.55 Aligned_cols=57 Identities=19% Similarity=0.262 Sum_probs=40.9
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCC----CCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPN----NFDFVIWEVVSRDLQLGKIQESIAKKIG 225 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~F~~~~wv~v~~~~~~~~l~~~i~~~l~ 225 (532)
.-.++-|+|..|+|||+++..+.... .... .=..++||+....++...+.+. ++.++
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~-~~~~~~g~~~~~~~yi~te~~f~~~rl~~~-~~~~g 154 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNV-QLPEEKGGLGGKAVYIDTENTFRPERIMQM-AEARG 154 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh-cCCcccCCCcceEEEEECCCCCCHHHHHHH-HHHcC
Confidence 46788899999999999999987664 2110 1137899999888888776543 44443
No 457
>PTZ00088 adenylate kinase 1; Provisional
Probab=90.93 E-value=0.2 Score=47.38 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=21.0
Q ss_pred EEEEecCCCCcHHHHHHHHHHhc
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.|.|.|++|+||||+|+.+....
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999999998876
No 458
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=90.91 E-value=0.29 Score=47.22 Aligned_cols=26 Identities=35% Similarity=0.433 Sum_probs=23.0
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-.+++|+|..|.|||||++.+....
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 26 SGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998765
No 459
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=90.90 E-value=0.23 Score=49.46 Aligned_cols=26 Identities=27% Similarity=0.502 Sum_probs=24.0
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+..+++++|+.|+||||++..+....
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46899999999999999999998877
No 460
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=90.90 E-value=0.3 Score=46.50 Aligned_cols=25 Identities=40% Similarity=0.507 Sum_probs=22.5
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
-.+++|+|+.|.|||||.+.+..-.
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll 54 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLL 54 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999999999998844
No 461
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=90.89 E-value=0.32 Score=45.44 Aligned_cols=26 Identities=38% Similarity=0.381 Sum_probs=23.1
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-.+++|+|..|.|||||++.+....
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998765
No 462
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.84 E-value=0.3 Score=46.66 Aligned_cols=26 Identities=35% Similarity=0.395 Sum_probs=23.0
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-.+++|+|..|.|||||++.+....
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (242)
T cd03295 26 KGEFLVLIGPSGSGKTTTMKMINRLI 51 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999998765
No 463
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.84 E-value=0.3 Score=46.65 Aligned_cols=26 Identities=35% Similarity=0.469 Sum_probs=22.9
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-.+++|+|..|.|||||++.+....
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 28 GGAIYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998765
No 464
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=90.82 E-value=0.3 Score=46.28 Aligned_cols=25 Identities=36% Similarity=0.502 Sum_probs=22.5
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
-.+++|+|..|.|||||++.+..-.
T Consensus 11 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 11 GEFISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999998765
No 465
>PRK07933 thymidylate kinase; Validated
Probab=90.81 E-value=0.21 Score=46.71 Aligned_cols=23 Identities=26% Similarity=0.608 Sum_probs=21.9
Q ss_pred EEEEecCCCCcHHHHHHHHHHhc
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.|+|.|+.|+||||+++.+.+..
T Consensus 2 ~IviEG~dGsGKST~~~~L~~~L 24 (213)
T PRK07933 2 LIAIEGVDGAGKRTLTEALRAAL 24 (213)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999988
No 466
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=90.80 E-value=0.27 Score=47.93 Aligned_cols=25 Identities=32% Similarity=0.573 Sum_probs=21.9
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhcc
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSFL 193 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~~ 193 (532)
++|+|.|-|||||||++..+.....
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~La 26 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGLA 26 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHHH
Confidence 5789999999999999999887773
No 467
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=90.80 E-value=0.35 Score=43.51 Aligned_cols=26 Identities=31% Similarity=0.416 Sum_probs=23.0
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-.+++|+|..|.|||||.+.+....
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 34689999999999999999998765
No 468
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=90.80 E-value=1.1 Score=44.81 Aligned_cols=73 Identities=15% Similarity=0.222 Sum_probs=47.5
Q ss_pred HHHHHHHHHhcc---CCceEEEEecCCCCcHHHHHHHHHHhccCCC-CCCCeEEEEEeCC----CCCHHHHHHHHHHHhc
Q 009534 154 STLDRVWRCLTE---EPVGIVGLYGMGGVGKTTLLTQINNSFLHTP-NNFDFVIWEVVSR----DLQLGKIQESIAKKIG 225 (532)
Q Consensus 154 ~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~F~~~~wv~v~~----~~~~~~l~~~i~~~l~ 225 (532)
.-.+.+.+.+.+ +...+|+|.|.=|+||||+.+.+.+.. +.. ..--..+|+.... ..-...++..|..++.
T Consensus 3 ~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L-~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~l~ 81 (325)
T PF07693_consen 3 PYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEEL-KEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQLE 81 (325)
T ss_pred HHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHH-hcccccceeeEEEccccCCCcchHHHHHHHHHHHHHH
Confidence 345566666665 468899999999999999999999988 333 1112233333222 2234566777777766
Q ss_pred CC
Q 009534 226 LC 227 (532)
Q Consensus 226 ~~ 227 (532)
..
T Consensus 82 ~~ 83 (325)
T PF07693_consen 82 KH 83 (325)
T ss_pred Hh
Confidence 53
No 469
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=90.79 E-value=0.32 Score=44.70 Aligned_cols=26 Identities=35% Similarity=0.567 Sum_probs=23.0
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-.+++|+|..|.|||||++.+....
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999998865
No 470
>PRK09183 transposase/IS protein; Provisional
Probab=90.77 E-value=0.2 Score=48.45 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=21.8
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
...+.|+|+.|+|||+||.++.+..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 4567799999999999999998775
No 471
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=90.76 E-value=0.57 Score=43.74 Aligned_cols=26 Identities=35% Similarity=0.543 Sum_probs=22.8
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+--+|+|+|..|.|||||.+.+..-.
T Consensus 29 ~GE~VaiIG~SGaGKSTLLR~lngl~ 54 (258)
T COG3638 29 QGEMVAIIGPSGAGKSTLLRSLNGLV 54 (258)
T ss_pred CCcEEEEECCCCCcHHHHHHHHhccc
Confidence 45689999999999999999998754
No 472
>PRK08356 hypothetical protein; Provisional
Probab=90.76 E-value=0.22 Score=45.90 Aligned_cols=21 Identities=38% Similarity=0.393 Sum_probs=19.2
Q ss_pred ceEEEEecCCCCcHHHHHHHH
Q 009534 168 VGIVGLYGMGGVGKTTLLTQI 188 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v 188 (532)
..+|.|.|+.|+||||+|+.+
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l 25 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFF 25 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHH
Confidence 357899999999999999999
No 473
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=90.74 E-value=0.21 Score=44.10 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=19.5
Q ss_pred EEEecCCCCcHHHHHHHHHHhc
Q 009534 171 VGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 171 i~I~G~gGiGKTtLa~~v~~~~ 192 (532)
|.|+|.+|+|||||++.+.+..
T Consensus 3 i~v~G~~~vGKTsli~~l~~~~ 24 (161)
T cd04113 3 FIIIGSSGTGKSCLLHRFVENK 24 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 6899999999999999987654
No 474
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=90.73 E-value=0.73 Score=50.03 Aligned_cols=46 Identities=24% Similarity=0.302 Sum_probs=37.0
Q ss_pred CcccccHHHHHHHHHHhcc---------C---CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTE---------E---PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~---------~---~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+++-|.++-+++|.+-+.- . +..=|-.+|++|.|||-+|++|....
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc 729 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC 729 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc
Confidence 5678899999999988743 1 23446679999999999999998876
No 475
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=90.73 E-value=0.31 Score=44.32 Aligned_cols=83 Identities=16% Similarity=0.207 Sum_probs=58.4
Q ss_pred ccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCC--
Q 009534 322 VSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVT-- 399 (532)
Q Consensus 322 l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~-- 399 (532)
+++|++|.+.+ +.+..+....-.-+++|+.|.+.+- ++..+.. ... +..+|.|++|.+-++...+..
T Consensus 63 l~rL~tLll~n-NrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~d-l~p--------La~~p~L~~Ltll~Npv~~k~~Y 131 (233)
T KOG1644|consen 63 LPRLHTLLLNN-NRITRIDPDLDTFLPNLKTLILTNN-SIQELGD-LDP--------LASCPKLEYLTLLGNPVEHKKNY 131 (233)
T ss_pred ccccceEEecC-CcceeeccchhhhccccceEEecCc-chhhhhh-cch--------hccCCccceeeecCCchhcccCc
Confidence 46699999988 4578776553356778999999873 4444421 111 236899999999998655532
Q ss_pred ---chhcCCCcceeeeccc
Q 009534 400 ---WLILAPNLKLIQMYDC 415 (532)
Q Consensus 400 ---~l~~l~~L~~L~l~~c 415 (532)
.+..+|+|++|+..+-
T Consensus 132 R~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 132 RLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eeEEEEecCcceEeehhhh
Confidence 3788999999998653
No 476
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=90.72 E-value=0.21 Score=43.84 Aligned_cols=23 Identities=35% Similarity=0.548 Sum_probs=19.9
Q ss_pred EEEEecCCCCcHHHHHHHHHHhc
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
-|.++|..|+|||||.+++.+..
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~~ 25 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQNH 25 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37889999999999999987654
No 477
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=90.71 E-value=0.33 Score=45.74 Aligned_cols=36 Identities=28% Similarity=0.241 Sum_probs=28.0
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEE
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEV 206 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~ 206 (532)
.-.+++|+|..|.|||||++.+..-. ....+.+++.
T Consensus 33 ~Ge~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~i~~~ 68 (224)
T TIGR02324 33 AGECVALSGPSGAGKSTLLKSLYANY----LPDSGRILVR 68 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCCeEEEe
Confidence 34689999999999999999998865 2344555553
No 478
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.70 E-value=0.35 Score=52.20 Aligned_cols=46 Identities=24% Similarity=0.287 Sum_probs=39.4
Q ss_pred CcccccHHHHHHHHHHhccCC-ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEP-VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+++|.+..++.+.+.+..++ ...+-++|+.|+||||+|+.+....
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L 62 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKAL 62 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhc
Confidence 457999888888888888765 4678889999999999999998877
No 479
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=90.70 E-value=0.72 Score=46.30 Aligned_cols=65 Identities=25% Similarity=0.240 Sum_probs=46.3
Q ss_pred CcccccHHHHHHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCHHHHHHH
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQLGKIQES 219 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~ 219 (532)
..++|.++.+..+...+..+ +-+-+.|..|+|||++|+.+.... . -...+|.+.......++...
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~--~~vll~G~PG~gKT~la~~lA~~l---~---~~~~~i~~t~~l~p~d~~G~ 88 (329)
T COG0714 24 KVVVGDEEVIELALLALLAG--GHVLLEGPPGVGKTLLARALARAL---G---LPFVRIQCTPDLLPSDLLGT 88 (329)
T ss_pred CeeeccHHHHHHHHHHHHcC--CCEEEECCCCccHHHHHHHHHHHh---C---CCeEEEecCCCCCHHHhcCc
Confidence 34789888888887777654 446678999999999999999987 2 23345555655555554443
No 480
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=90.69 E-value=0.98 Score=42.97 Aligned_cols=49 Identities=18% Similarity=0.143 Sum_probs=36.0
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCHHHHHHHH
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQLGKIQESI 220 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i 220 (532)
.-.++-|.|.+|+|||++|..+..... ..-+.++||+... +..++.+.+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~---~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGL---QMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH---HcCCcEEEEEeeC--CHHHHHHHH
Confidence 568899999999999999998755542 3346788888755 555555553
No 481
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=90.69 E-value=0.32 Score=46.33 Aligned_cols=35 Identities=29% Similarity=0.196 Sum_probs=27.3
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEE
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWE 205 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv 205 (532)
.-.+++|+|..|.|||||++.+..-. ....+.+++
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~----~~~~G~i~~ 60 (240)
T PRK09493 26 QGEVVVIIGPSGSGKSTLLRCINKLE----EITSGDLIV 60 (240)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEE
Confidence 34689999999999999999998765 234455555
No 482
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=90.68 E-value=0.33 Score=48.12 Aligned_cols=39 Identities=23% Similarity=0.263 Sum_probs=33.7
Q ss_pred cccHHHHHHHHHHhccCCceEEEEecCCCCcHHHHHHHH
Q 009534 150 VGLQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQI 188 (532)
Q Consensus 150 vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v 188 (532)
-+|+.+..--+++|.++++..|++.|.+|.|||.||-+.
T Consensus 227 ~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaA 265 (436)
T COG1875 227 RPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAA 265 (436)
T ss_pred CcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHH
Confidence 456667777788899999999999999999999999774
No 483
>PRK10908 cell division protein FtsE; Provisional
Probab=90.65 E-value=0.34 Score=45.60 Aligned_cols=35 Identities=34% Similarity=0.347 Sum_probs=27.1
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEE
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWE 205 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv 205 (532)
.-.+++|+|..|+|||||.+.+.... ....+.+++
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~ 61 (222)
T PRK10908 27 PGEMAFLTGHSGAGKSTLLKLICGIE----RPSAGKIWF 61 (222)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEE
Confidence 45789999999999999999998765 233455554
No 484
>PLN02318 phosphoribulokinase/uridine kinase
Probab=90.64 E-value=0.23 Score=52.83 Aligned_cols=27 Identities=30% Similarity=0.501 Sum_probs=24.2
Q ss_pred CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 166 EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 166 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+++.+|+|.|..|.||||+|+.+....
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 467899999999999999999998765
No 485
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=90.64 E-value=0.33 Score=46.84 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=23.1
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-.+++|+|..|.|||||.+.+....
T Consensus 37 ~Ge~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 37 AGQFVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998765
No 486
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=90.63 E-value=0.18 Score=43.89 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=19.7
Q ss_pred EEEecCCCCcHHHHHHHHHHhc
Q 009534 171 VGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 171 i~I~G~gGiGKTtLa~~v~~~~ 192 (532)
|+|+|..|+|||||.+.+....
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~ 23 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQ 23 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCC
Confidence 6899999999999999997763
No 487
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=90.63 E-value=0.18 Score=43.39 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=19.9
Q ss_pred EEEEecCCCCcHHHHHHHHHHhc
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
-|.++|.+|+|||||..++....
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~ 24 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEE 24 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCc
Confidence 37899999999999999987654
No 488
>PRK14531 adenylate kinase; Provisional
Probab=90.60 E-value=0.24 Score=45.03 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=21.5
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..|.|.|+.|.||||+++.+....
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999998876
No 489
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=90.60 E-value=0.2 Score=48.81 Aligned_cols=23 Identities=39% Similarity=0.784 Sum_probs=21.1
Q ss_pred EEEEecCCCCcHHHHHHHHHHhc
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+++|.|..|+||||+++.+....
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll 23 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLF 23 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhh
Confidence 58999999999999999998776
No 490
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=90.58 E-value=0.39 Score=53.49 Aligned_cols=46 Identities=26% Similarity=0.430 Sum_probs=37.3
Q ss_pred CcccccHHHHHHHHHHhcc--------C-CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTE--------E-PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~--------~-~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..++|.++.++.+.+.+.. + ....+-++|+.|+|||++|+.+....
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999998888762 1 24567889999999999999998776
No 491
>PRK06526 transposase; Provisional
Probab=90.58 E-value=0.21 Score=48.09 Aligned_cols=25 Identities=28% Similarity=0.230 Sum_probs=22.3
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..-+-++|++|+|||+||..+....
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHH
Confidence 4568899999999999999998876
No 492
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=90.58 E-value=0.23 Score=43.59 Aligned_cols=24 Identities=38% Similarity=0.592 Sum_probs=21.2
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHh
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNS 191 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~ 191 (532)
..+|+++|..|+||||+.+.+...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999998665
No 493
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=90.57 E-value=0.21 Score=44.09 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=19.8
Q ss_pred EEEecCCCCcHHHHHHHHHHhc
Q 009534 171 VGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 171 i~I~G~gGiGKTtLa~~v~~~~ 192 (532)
|.++|..|+|||||++.+.+..
T Consensus 3 v~v~G~~~~GKTtli~~l~~~~ 24 (164)
T smart00175 3 IILIGDSGVGKSSLLSRFTDGK 24 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999998654
No 494
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=90.56 E-value=0.21 Score=43.67 Aligned_cols=21 Identities=38% Similarity=0.634 Sum_probs=19.0
Q ss_pred EEEecCCCCcHHHHHHHHHHh
Q 009534 171 VGLYGMGGVGKTTLLTQINNS 191 (532)
Q Consensus 171 i~I~G~gGiGKTtLa~~v~~~ 191 (532)
|.|+|..|+|||||...+...
T Consensus 2 i~i~G~~~~GKTsli~~l~~~ 22 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999998765
No 495
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=90.53 E-value=0.2 Score=43.33 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.6
Q ss_pred EEEEecCCCCcHHHHHHHHHHhc
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
-|+++|..|+|||||+..+....
T Consensus 3 ki~~~G~~~~GKstl~~~l~~~~ 25 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLNRLLGNK 25 (161)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999997765
No 496
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=90.50 E-value=0.34 Score=45.69 Aligned_cols=26 Identities=35% Similarity=0.562 Sum_probs=23.1
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-.+++|.|..|.|||||++.+..-.
T Consensus 47 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 47 RGERIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45789999999999999999998765
No 497
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=90.48 E-value=0.31 Score=46.31 Aligned_cols=26 Identities=46% Similarity=0.653 Sum_probs=22.8
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-.+++|+|..|.|||||++.+..-.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 25 PGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 34689999999999999999998764
No 498
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=90.47 E-value=0.38 Score=42.83 Aligned_cols=35 Identities=23% Similarity=0.272 Sum_probs=27.5
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEE
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWE 205 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv 205 (532)
.-.+++|.|..|.|||||.+.+.... ....+.+++
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~v~~ 59 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY----KPDSGEILV 59 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEE
Confidence 35689999999999999999998765 334555555
No 499
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=90.46 E-value=0.24 Score=46.66 Aligned_cols=26 Identities=35% Similarity=0.415 Sum_probs=22.3
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.--.++|+|+.|+|||||.+.+..-.
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999986544
No 500
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=90.46 E-value=0.47 Score=48.87 Aligned_cols=46 Identities=20% Similarity=0.190 Sum_probs=35.9
Q ss_pred CcccccHHHHHHHHHHhc-------c---C--------CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLT-------E---E--------PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~-------~---~--------~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..++|.++.++.+...+. . . ....+-++|+.|+|||++|+.+....
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc
Confidence 467999999988876651 1 1 12468899999999999999998766
Done!