Query 009534
Match_columns 532
No_of_seqs 315 out of 3281
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 07:22:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009534.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009534hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.6 1.3E-15 4.3E-20 152.1 13.0 163 322-510 149-320 (328)
2 2a5y_B CED-4; apoptosis; HET: 99.6 7E-15 2.4E-19 156.9 13.4 108 147-255 128-248 (549)
3 4fcg_A Uncharacterized protein 99.5 7.6E-14 2.6E-18 139.1 13.7 189 286-499 96-285 (328)
4 3qfl_A MLA10; coiled-coil, (CC 99.4 1.3E-13 4.3E-18 114.2 7.4 75 10-91 2-77 (115)
5 2xwt_C Thyrotropin receptor; s 99.4 2.7E-12 9.2E-17 121.7 11.9 178 295-500 32-214 (239)
6 3zyi_A Leucine-rich repeat-con 99.3 6.3E-12 2.1E-16 131.0 13.8 151 322-498 146-297 (452)
7 3zyj_A Leucine-rich repeat-con 99.3 1.2E-11 4.1E-16 128.4 14.4 181 287-498 105-286 (440)
8 1vt4_I APAF-1 related killer D 99.3 4.8E-12 1.6E-16 139.1 8.2 107 148-255 129-249 (1221)
9 1ozn_A Reticulon 4 receptor; N 99.2 3.4E-11 1.2E-15 117.2 10.6 166 288-484 50-218 (285)
10 2o6q_A Variable lymphocyte rec 99.2 1.1E-10 3.9E-15 112.6 13.6 175 294-500 37-214 (270)
11 3rfs_A Internalin B, repeat mo 99.2 6.6E-11 2.2E-15 114.4 11.8 126 323-476 63-191 (272)
12 3rfs_A Internalin B, repeat mo 99.2 7.8E-11 2.7E-15 113.9 11.8 163 286-481 55-220 (272)
13 2xwt_C Thyrotropin receptor; s 99.2 5.8E-11 2E-15 112.4 10.6 175 288-494 49-232 (239)
14 4ezg_A Putative uncharacterize 99.2 7.9E-11 2.7E-15 108.0 10.8 131 322-483 43-175 (197)
15 3m19_A Variable lymphocyte rec 99.1 3.3E-10 1.1E-14 108.1 12.8 149 324-499 36-187 (251)
16 2o6q_A Variable lymphocyte rec 99.1 2.6E-10 8.9E-15 110.1 11.5 159 288-477 55-216 (270)
17 4ezg_A Putative uncharacterize 99.1 2.1E-10 7.1E-15 105.2 9.8 150 291-477 41-192 (197)
18 3sfz_A APAF-1, apoptotic pepti 99.1 1.8E-10 6.2E-15 134.7 11.2 110 146-255 123-241 (1249)
19 3zyj_A Leucine-rich repeat-con 99.1 3.7E-10 1.3E-14 117.1 12.1 181 286-500 80-264 (440)
20 1h6u_A Internalin H; cell adhe 99.1 4.2E-10 1.4E-14 110.8 11.7 150 287-476 56-205 (308)
21 2id5_A Lingo-1, leucine rich r 99.1 4.4E-10 1.5E-14 117.7 12.5 177 287-484 49-241 (477)
22 2id5_A Lingo-1, leucine rich r 99.1 8.1E-10 2.8E-14 115.6 13.4 148 322-496 175-325 (477)
23 1p9a_G Platelet glycoprotein I 99.1 4.9E-10 1.7E-14 109.3 11.0 144 322-496 54-200 (290)
24 2ell_A Acidic leucine-rich nuc 99.1 6.2E-10 2.1E-14 99.1 10.6 134 323-485 24-165 (168)
25 1z6t_A APAF-1, apoptotic prote 99.1 2.7E-10 9.1E-15 122.8 9.7 107 147-255 124-241 (591)
26 3zyi_A Leucine-rich repeat-con 99.1 7.1E-10 2.4E-14 115.4 12.3 181 286-500 91-275 (452)
27 2z62_A TOLL-like receptor 4, v 99.0 7.3E-10 2.5E-14 107.2 11.4 149 322-497 75-230 (276)
28 1ozn_A Reticulon 4 receptor; N 99.0 1E-09 3.5E-14 106.6 12.2 164 293-486 31-197 (285)
29 1p9a_G Platelet glycoprotein I 99.0 2.2E-09 7.6E-14 104.7 14.4 174 289-499 5-180 (290)
30 4eco_A Uncharacterized protein 99.0 1.3E-09 4.6E-14 118.3 14.1 180 286-483 198-419 (636)
31 3o53_A Protein LRIM1, AGAP0063 99.0 2.9E-10 1E-14 112.4 8.2 100 381-498 142-244 (317)
32 1h6t_A Internalin B; cell adhe 99.0 4.8E-10 1.6E-14 109.5 9.4 123 322-477 89-211 (291)
33 4fmz_A Internalin; leucine ric 99.0 4.5E-10 1.5E-14 112.4 9.4 129 322-482 198-326 (347)
34 4ecn_A Leucine-rich repeat pro 99.0 2.6E-09 8.9E-14 119.1 15.8 124 286-415 440-583 (876)
35 1h6t_A Internalin B; cell adhe 99.0 7.8E-10 2.7E-14 108.0 9.9 153 291-484 43-195 (291)
36 3o6n_A APL1; leucine-rich repe 99.0 5.8E-10 2E-14 113.6 9.3 186 289-484 112-335 (390)
37 3e6j_A Variable lymphocyte rec 99.0 1.3E-09 4.4E-14 102.5 11.0 128 323-477 40-170 (229)
38 3m19_A Variable lymphocyte rec 99.0 1.3E-09 4.5E-14 103.9 11.1 153 294-477 35-190 (251)
39 1m9s_A Internalin B; cell inva 99.0 3.8E-10 1.3E-14 121.3 8.2 151 287-477 58-208 (605)
40 3vq2_A TLR4, TOLL-like recepto 99.0 4E-10 1.4E-14 121.7 8.1 150 322-497 398-551 (606)
41 3oja_B Anopheles plasmodium-re 99.0 6.2E-10 2.1E-14 120.1 9.3 187 289-485 118-342 (597)
42 4fmz_A Internalin; leucine ric 99.0 9.3E-10 3.2E-14 110.1 9.8 104 380-501 218-321 (347)
43 3oja_A Leucine-rich immune mol 99.0 5.6E-10 1.9E-14 117.2 8.3 88 381-485 142-232 (487)
44 1m9s_A Internalin B; cell inva 99.0 6.7E-10 2.3E-14 119.4 9.0 153 290-483 39-191 (605)
45 2o6s_A Variable lymphocyte rec 99.0 2.6E-09 8.8E-14 98.7 11.8 130 323-478 28-160 (208)
46 2z66_A Variable lymphocyte rec 99.0 9.6E-10 3.3E-14 108.0 8.9 102 381-496 148-253 (306)
47 3o6n_A APL1; leucine-rich repe 99.0 1.9E-09 6.4E-14 109.8 11.3 31 381-412 163-193 (390)
48 4ay9_X Follicle-stimulating ho 99.0 2.7E-09 9.2E-14 107.0 12.3 190 294-499 30-234 (350)
49 3v47_A TOLL-like receptor 5B a 99.0 3.5E-09 1.2E-13 110.0 13.4 105 379-498 295-402 (455)
50 1xku_A Decorin; proteoglycan, 99.0 3.6E-09 1.2E-13 105.1 12.9 44 438-483 236-279 (330)
51 4ecn_A Leucine-rich repeat pro 99.0 1.4E-09 4.9E-14 121.1 11.0 157 324-503 674-839 (876)
52 3oja_B Anopheles plasmodium-re 99.0 2E-09 6.7E-14 116.1 11.4 77 323-412 123-199 (597)
53 4eco_A Uncharacterized protein 99.0 1.7E-09 5.9E-14 117.4 10.8 159 324-505 434-601 (636)
54 1wwl_A Monocyte differentiatio 99.0 2.1E-09 7.3E-14 105.9 10.6 152 323-502 149-307 (312)
55 2z80_A TOLL-like receptor 2, v 99.0 3.3E-10 1.1E-14 113.8 4.8 39 437-476 193-232 (353)
56 2z66_A Variable lymphocyte rec 98.9 7.9E-10 2.7E-14 108.6 7.1 150 323-499 78-231 (306)
57 1h6u_A Internalin H; cell adhe 98.9 1E-09 3.4E-14 108.1 7.7 152 291-483 38-189 (308)
58 3e6j_A Variable lymphocyte rec 98.9 5.7E-09 1.9E-13 98.0 12.3 146 325-500 21-168 (229)
59 2z80_A TOLL-like receptor 2, v 98.9 3.8E-09 1.3E-13 106.0 11.5 137 322-484 75-215 (353)
60 2z63_A TOLL-like receptor 4, v 98.9 1E-09 3.6E-14 117.3 7.8 103 380-497 418-524 (570)
61 1ogq_A PGIP-2, polygalacturona 98.9 2.9E-09 9.8E-14 105.1 10.2 195 286-500 68-277 (313)
62 4glp_A Monocyte differentiatio 98.9 1.2E-09 4.3E-14 107.5 7.4 179 291-501 114-304 (310)
63 3t6q_A CD180 antigen; protein- 98.9 5.5E-09 1.9E-13 112.7 12.9 170 290-477 274-460 (606)
64 2v9t_B SLIT homolog 2 protein 98.9 6.9E-09 2.4E-13 96.8 11.6 129 323-477 32-163 (220)
65 3o53_A Protein LRIM1, AGAP0063 98.9 2.3E-09 7.7E-14 106.0 8.5 132 322-479 119-250 (317)
66 2je0_A Acidic leucine-rich nuc 98.9 1.4E-09 4.6E-14 94.8 6.0 125 323-475 17-149 (149)
67 2ast_B S-phase kinase-associat 98.9 2.3E-10 7.9E-15 113.9 1.0 129 323-476 142-282 (336)
68 2ast_B S-phase kinase-associat 98.9 5.6E-10 1.9E-14 111.1 3.8 160 290-479 89-260 (336)
69 3bz5_A Internalin-J, INLJ; leu 98.9 5.1E-09 1.8E-13 108.9 11.2 83 382-484 126-208 (457)
70 1ogq_A PGIP-2, polygalacturona 98.9 2.8E-09 9.5E-14 105.2 8.6 178 286-485 93-287 (313)
71 4ay9_X Follicle-stimulating ho 98.9 4.9E-09 1.7E-13 105.1 10.4 190 288-499 48-254 (350)
72 2z81_A CD282 antigen, TOLL-lik 98.9 3.8E-09 1.3E-13 112.5 10.0 129 323-485 361-491 (549)
73 3bz5_A Internalin-J, INLJ; leu 98.9 1E-08 3.5E-13 106.6 12.0 97 379-499 144-241 (457)
74 2v70_A SLIT-2, SLIT homolog 2 98.8 1.6E-08 5.6E-13 94.2 12.0 128 324-477 33-164 (220)
75 2ft3_A Biglycan; proteoglycan, 98.8 1E-08 3.5E-13 101.9 11.0 173 287-484 95-281 (332)
76 3rgz_A Protein brassinosteroid 98.8 9.1E-09 3.1E-13 114.3 11.7 88 323-422 466-555 (768)
77 1o6v_A Internalin A; bacterial 98.8 9.3E-09 3.2E-13 107.3 11.1 86 381-483 285-370 (466)
78 1xeu_A Internalin C; cellular 98.8 5.2E-09 1.8E-13 100.5 8.5 148 289-477 36-183 (263)
79 3vq2_A TLR4, TOLL-like recepto 98.8 4.7E-09 1.6E-13 113.2 8.9 134 321-479 422-558 (606)
80 4g8a_A TOLL-like receptor 4; l 98.8 6.2E-09 2.1E-13 112.6 9.7 126 325-476 54-183 (635)
81 1xeu_A Internalin C; cellular 98.8 2.4E-08 8.2E-13 95.8 12.0 127 321-482 39-165 (263)
82 3rgz_A Protein brassinosteroid 98.8 4.8E-09 1.7E-13 116.5 8.1 92 381-485 464-557 (768)
83 3oja_A Leucine-rich immune mol 98.8 9.8E-09 3.3E-13 107.7 9.9 88 381-484 118-208 (487)
84 1o6v_A Internalin A; bacterial 98.8 8.8E-09 3E-13 107.5 9.4 103 287-412 61-163 (466)
85 2z81_A CD282 antigen, TOLL-lik 98.8 1.6E-08 5.6E-13 107.5 11.5 132 322-477 49-183 (549)
86 2z7x_B TOLL-like receptor 1, v 98.8 1.2E-08 4.1E-13 107.9 10.3 146 322-497 323-474 (520)
87 2o6s_A Variable lymphocyte rec 98.8 6.1E-09 2.1E-13 96.1 7.0 159 293-488 27-187 (208)
88 2z63_A TOLL-like receptor 4, v 98.8 1.6E-08 5.5E-13 108.1 11.2 152 322-500 346-503 (570)
89 3t6q_A CD180 antigen; protein- 98.8 1.2E-08 4.1E-13 110.1 9.9 85 381-476 423-510 (606)
90 2z62_A TOLL-like receptor 4, v 98.8 1.5E-08 5E-13 97.9 9.5 149 322-499 51-208 (276)
91 2xot_A Amphoterin-induced prot 98.8 1.8E-08 6.3E-13 101.4 10.5 135 323-484 39-180 (361)
92 1a9n_A U2A', U2A'; complex (nu 98.8 9.6E-09 3.3E-13 92.2 7.5 126 323-477 19-151 (176)
93 1xku_A Decorin; proteoglycan, 98.8 5.1E-08 1.8E-12 96.7 13.1 183 286-505 92-277 (330)
94 2v9t_B SLIT homolog 2 protein 98.8 5.4E-08 1.9E-12 90.6 12.4 145 326-500 14-161 (220)
95 2z7x_B TOLL-like receptor 1, v 98.8 2.1E-08 7E-13 106.1 10.4 156 291-477 321-479 (520)
96 4glp_A Monocyte differentiatio 98.7 1.4E-08 4.8E-13 99.9 7.8 150 322-495 116-279 (310)
97 3v47_A TOLL-like receptor 5B a 98.7 3.9E-08 1.3E-12 102.0 11.2 132 322-477 53-191 (455)
98 1ziw_A TOLL-like receptor 3; i 98.7 1.1E-07 3.7E-12 104.0 14.7 94 322-416 328-441 (680)
99 3a79_B TLR6, VLRB.59, TOLL-lik 98.7 5.4E-08 1.9E-12 104.0 11.2 150 322-498 352-504 (562)
100 1jl5_A Outer protein YOPM; leu 98.7 5.5E-08 1.9E-12 101.0 10.8 139 323-485 131-275 (454)
101 2ft3_A Biglycan; proteoglycan, 98.7 7.8E-08 2.7E-12 95.5 11.0 130 323-483 78-209 (332)
102 2ell_A Acidic leucine-rich nuc 98.7 2.9E-08 9.9E-13 88.1 6.8 111 346-484 22-137 (168)
103 3j0a_A TOLL-like receptor 5; m 98.6 5.8E-08 2E-12 108.9 10.3 84 322-416 47-134 (844)
104 3a79_B TLR6, VLRB.59, TOLL-lik 98.6 8.2E-08 2.8E-12 102.6 10.8 155 291-477 350-508 (562)
105 1a9n_A U2A', U2A'; complex (nu 98.6 2.5E-08 8.7E-13 89.3 5.5 133 291-453 16-151 (176)
106 3j0a_A TOLL-like receptor 5; m 98.6 9.5E-08 3.3E-12 107.2 11.3 164 286-477 40-215 (844)
107 1dce_A Protein (RAB geranylger 98.6 7.1E-08 2.4E-12 102.9 9.6 119 324-472 442-566 (567)
108 1wwl_A Monocyte differentiatio 98.6 8.5E-08 2.9E-12 94.4 9.2 179 292-501 93-284 (312)
109 2je0_A Acidic leucine-rich nuc 98.6 1.5E-08 5.3E-13 88.0 3.3 111 346-484 15-130 (149)
110 3g06_A SSPH2 (leucine-rich rep 98.6 2.3E-07 7.9E-12 99.8 13.1 53 441-499 240-292 (622)
111 2v70_A SLIT-2, SLIT homolog 2 98.6 3.1E-07 1.1E-11 85.4 12.2 146 325-501 13-163 (220)
112 2o6r_A Variable lymphocyte rec 98.6 2.7E-07 9.3E-12 82.6 10.7 124 325-477 9-135 (177)
113 1ziw_A TOLL-like receptor 3; i 98.6 1.3E-07 4.4E-12 103.5 10.1 158 294-483 25-187 (680)
114 2xot_A Amphoterin-induced prot 98.6 5.5E-08 1.9E-12 97.9 6.1 130 321-476 62-199 (361)
115 3cvr_A Invasion plasmid antige 98.5 2.6E-07 8.9E-12 98.2 10.3 134 322-500 99-239 (571)
116 2wfh_A SLIT homolog 2 protein 98.5 4.7E-07 1.6E-11 82.4 10.4 121 326-476 13-136 (193)
117 4b8c_D Glucose-repressible alc 98.5 7.2E-08 2.5E-12 106.0 5.9 104 322-453 223-327 (727)
118 1jl5_A Outer protein YOPM; leu 98.5 4.3E-07 1.5E-11 94.2 11.2 109 383-499 131-245 (454)
119 2o6r_A Variable lymphocyte rec 98.5 2.9E-07 9.9E-12 82.4 8.6 106 323-453 28-135 (177)
120 3g06_A SSPH2 (leucine-rich rep 98.5 7.4E-07 2.5E-11 95.9 12.6 153 294-483 61-217 (622)
121 2wfh_A SLIT homolog 2 protein 98.5 4E-07 1.4E-11 82.9 8.8 105 323-453 31-137 (193)
122 1w8a_A SLIT protein; signaling 98.4 8.2E-07 2.8E-11 80.7 10.3 124 325-477 10-137 (192)
123 2ca6_A RAN GTPase-activating p 98.4 9.2E-08 3.2E-12 97.1 4.2 34 323-358 94-132 (386)
124 4g8a_A TOLL-like receptor 4; l 98.4 4.5E-07 1.5E-11 97.9 9.7 149 322-496 419-572 (635)
125 1ds9_A Outer arm dynein; leuci 98.4 6.7E-09 2.3E-13 95.1 -4.0 79 322-415 47-125 (198)
126 1dce_A Protein (RAB geranylger 98.4 1.2E-08 4E-13 108.9 -2.8 76 385-476 443-518 (567)
127 1w5s_A Origin recognition comp 98.4 7.7E-07 2.6E-11 90.9 10.4 107 147-255 22-143 (412)
128 3e4g_A ATP synthase subunit S, 98.4 9.9E-08 3.4E-12 84.6 2.6 88 325-420 63-154 (176)
129 4b8c_D Glucose-repressible alc 98.4 5.3E-07 1.8E-11 99.1 8.3 119 339-484 215-334 (727)
130 3cvr_A Invasion plasmid antige 98.4 5.8E-07 2E-11 95.6 8.1 149 291-481 97-245 (571)
131 3sb4_A Hypothetical leucine ri 98.3 1.7E-06 5.9E-11 85.6 11.0 35 322-358 100-134 (329)
132 1ds9_A Outer arm dynein; leuci 98.3 5.1E-08 1.7E-12 89.2 -0.4 124 325-478 25-152 (198)
133 3e4g_A ATP synthase subunit S, 98.3 1.6E-07 5.4E-12 83.3 2.5 64 381-456 83-153 (176)
134 1w8a_A SLIT protein; signaling 98.3 1.2E-06 4.2E-11 79.5 8.0 105 324-453 30-137 (192)
135 2p1m_B Transport inhibitor res 98.3 6.1E-08 2.1E-12 104.1 -1.0 131 322-473 104-242 (594)
136 2ca6_A RAN GTPase-activating p 98.2 1.8E-07 6.1E-12 94.9 -0.4 173 286-478 114-315 (386)
137 2qby_B CDC6 homolog 3, cell di 98.1 7.4E-06 2.5E-10 82.7 10.4 105 147-252 20-135 (384)
138 2r9u_A Variable lymphocyte rec 98.1 4.9E-06 1.7E-10 74.2 8.0 74 326-414 15-90 (174)
139 3sb4_A Hypothetical leucine ri 98.1 8.7E-06 3E-10 80.5 10.5 61 322-395 48-136 (329)
140 3g39_A Variable lymphocyte rec 98.1 6.5E-06 2.2E-10 73.0 8.0 82 325-422 11-94 (170)
141 2v1u_A Cell division control p 98.1 1.6E-05 5.5E-10 80.1 11.8 100 147-248 19-126 (387)
142 2qby_A CDC6 homolog 1, cell di 98.1 5.7E-06 1.9E-10 83.4 8.4 105 147-255 20-133 (386)
143 1fnn_A CDC6P, cell division co 98.1 4.1E-05 1.4E-09 77.3 13.9 99 147-248 17-121 (389)
144 2qen_A Walker-type ATPase; unk 98.1 9.5E-06 3.3E-10 80.6 9.1 69 147-225 12-86 (350)
145 1z7x_W Ribonuclease inhibitor; 98.0 6.6E-07 2.2E-11 92.8 0.4 171 287-477 220-409 (461)
146 1z7x_W Ribonuclease inhibitor; 98.0 6.6E-07 2.2E-11 92.8 0.4 71 286-359 105-181 (461)
147 3goz_A Leucine-rich repeat-con 98.0 9.7E-07 3.3E-11 88.7 1.2 35 442-477 225-264 (362)
148 3ogk_B Coronatine-insensitive 98.0 2E-06 7E-11 92.1 3.5 83 382-477 435-524 (592)
149 3g39_A Variable lymphocyte rec 98.0 1.6E-05 5.5E-10 70.5 8.7 101 349-477 10-113 (170)
150 2ifg_A High affinity nerve gro 98.0 1.3E-05 4.5E-10 79.7 8.3 82 322-415 30-113 (347)
151 2r9u_A Variable lymphocyte rec 97.9 1.3E-05 4.3E-10 71.5 6.7 82 323-416 33-116 (174)
152 3ogk_B Coronatine-insensitive 97.9 2.1E-06 7.1E-11 92.1 1.1 85 381-479 291-390 (592)
153 2p1m_B Transport inhibitor res 97.9 2.6E-06 9E-11 91.2 1.2 39 439-478 478-518 (594)
154 2ra8_A Uncharacterized protein 97.9 4.1E-06 1.4E-10 83.9 2.4 133 321-477 170-318 (362)
155 2fna_A Conserved hypothetical 97.7 7.9E-05 2.7E-09 74.0 9.0 68 147-224 13-85 (357)
156 3goz_A Leucine-rich repeat-con 97.7 8.8E-06 3E-10 81.6 1.6 141 322-481 49-210 (362)
157 2ifg_A High affinity nerve gro 97.7 6.3E-05 2.1E-09 74.7 7.4 100 327-452 12-113 (347)
158 2ra8_A Uncharacterized protein 97.7 3.8E-05 1.3E-09 76.8 5.6 133 322-481 138-293 (362)
159 1jbk_A CLPB protein; beta barr 97.6 7.5E-05 2.6E-09 66.8 6.0 46 147-192 22-67 (195)
160 3te6_A Regulatory protein SIR3 97.6 0.00034 1.2E-08 68.1 10.9 79 148-227 21-108 (318)
161 2p65_A Hypothetical protein PF 97.4 0.00011 3.9E-09 65.4 5.3 46 147-192 22-67 (187)
162 2chg_A Replication factor C sm 97.4 0.00024 8.1E-09 65.1 7.4 46 147-192 17-62 (226)
163 4fdw_A Leucine rich hypothetic 97.2 0.0029 1E-07 64.0 13.3 161 323-505 203-384 (401)
164 1njg_A DNA polymerase III subu 97.1 0.00039 1.3E-08 64.6 5.1 46 147-192 23-69 (250)
165 3un9_A NLR family member X1; l 97.1 3.5E-05 1.2E-09 77.5 -2.5 137 323-477 101-250 (372)
166 3un9_A NLR family member X1; l 97.1 3.2E-05 1.1E-09 77.8 -2.8 134 322-476 71-221 (372)
167 4fdw_A Leucine rich hypothetic 97.0 0.004 1.4E-07 63.0 11.2 143 325-499 159-308 (401)
168 1iqp_A RFCS; clamp loader, ext 96.7 0.0014 4.7E-08 64.2 5.6 46 147-192 25-70 (327)
169 1sxj_B Activator 1 37 kDa subu 96.7 0.0011 3.9E-08 64.6 4.9 46 147-192 21-66 (323)
170 3h4m_A Proteasome-activating n 96.6 0.002 6.7E-08 61.9 5.6 46 147-192 17-75 (285)
171 3n70_A Transport activator; si 96.5 0.0024 8.3E-08 54.5 5.1 45 148-192 2-48 (145)
172 3pxg_A Negative regulator of g 96.5 0.0021 7.1E-08 66.6 5.4 46 147-192 180-225 (468)
173 3bos_A Putative DNA replicatio 96.4 0.0038 1.3E-07 57.8 5.8 60 147-209 28-90 (242)
174 1sxj_D Activator 1 41 kDa subu 96.3 0.0026 8.8E-08 63.0 4.3 46 147-192 37-82 (353)
175 2qz4_A Paraplegin; AAA+, SPG7, 96.2 0.0058 2E-07 57.6 6.2 46 147-192 6-63 (262)
176 3cf0_A Transitional endoplasmi 96.2 0.005 1.7E-07 59.7 5.6 46 147-192 15-73 (301)
177 2chq_A Replication factor C sm 96.2 0.003 1E-07 61.4 4.0 46 147-192 17-62 (319)
178 1jr3_A DNA polymerase III subu 96.2 0.0045 1.5E-07 61.7 5.4 46 147-192 16-62 (373)
179 3b9p_A CG5977-PA, isoform A; A 96.1 0.006 2.1E-07 58.8 5.9 46 147-192 21-78 (297)
180 3syl_A Protein CBBX; photosynt 96.1 0.005 1.7E-07 59.7 5.3 45 148-192 32-91 (309)
181 1sxj_A Activator 1 95 kDa subu 96.1 0.0049 1.7E-07 64.6 5.5 46 147-192 39-101 (516)
182 3ec2_A DNA replication protein 96.1 0.0041 1.4E-07 55.1 4.0 41 152-192 19-62 (180)
183 3pfi_A Holliday junction ATP-d 96.0 0.0056 1.9E-07 60.3 5.3 46 147-192 29-79 (338)
184 2w58_A DNAI, primosome compone 96.0 0.007 2.4E-07 54.6 5.6 51 154-207 36-90 (202)
185 3pvs_A Replication-associated 96.0 0.005 1.7E-07 63.2 4.9 46 147-192 26-74 (447)
186 1hqc_A RUVB; extended AAA-ATPa 96.0 0.0041 1.4E-07 60.7 4.1 46 147-192 12-62 (324)
187 3d8b_A Fidgetin-like protein 1 95.8 0.0081 2.8E-07 59.7 5.5 46 147-192 84-141 (357)
188 1qvr_A CLPB protein; coiled co 95.8 0.0055 1.9E-07 68.4 4.6 46 147-192 170-215 (854)
189 1xwi_A SKD1 protein; VPS4B, AA 95.8 0.01 3.5E-07 58.1 6.0 46 147-192 12-69 (322)
190 3uk6_A RUVB-like 2; hexameric 95.8 0.0094 3.2E-07 59.3 5.8 46 147-192 44-94 (368)
191 3pxi_A Negative regulator of g 95.8 0.0073 2.5E-07 66.5 5.4 46 147-192 180-225 (758)
192 1ofh_A ATP-dependent HSL prote 95.8 0.0081 2.8E-07 58.1 5.1 46 147-192 15-74 (310)
193 3eie_A Vacuolar protein sortin 95.8 0.011 3.9E-07 57.7 6.1 46 147-192 18-75 (322)
194 1sxj_E Activator 1 40 kDa subu 95.7 0.005 1.7E-07 61.0 3.5 46 147-192 14-60 (354)
195 1r6b_X CLPA protein; AAA+, N-t 95.7 0.0097 3.3E-07 65.6 5.9 46 147-192 186-231 (758)
196 3co5_A Putative two-component 95.7 0.0029 9.9E-08 53.9 1.3 46 147-192 4-51 (143)
197 1sxj_C Activator 1 40 kDa subu 95.6 0.0095 3.3E-07 58.7 5.1 46 147-192 25-70 (340)
198 1rz3_A Hypothetical protein rb 95.6 0.013 4.3E-07 53.0 5.5 41 152-192 3-46 (201)
199 1lv7_A FTSH; alpha/beta domain 95.6 0.0098 3.4E-07 56.0 4.7 46 147-192 12-69 (257)
200 3rw6_A Nuclear RNA export fact 95.5 0.0031 1.1E-07 59.8 0.7 36 167-205 23-58 (267)
201 1in4_A RUVB, holliday junction 95.4 0.0089 3E-07 58.8 4.0 46 147-192 25-75 (334)
202 3rw6_A Nuclear RNA export fact 95.4 0.011 3.7E-07 56.0 4.3 33 382-414 169-205 (267)
203 2x8a_A Nuclear valosin-contain 95.4 0.015 5.2E-07 55.4 5.3 45 147-192 10-68 (274)
204 3u61_B DNA polymerase accessor 95.3 0.018 6.1E-07 56.2 5.6 46 147-192 26-72 (324)
205 4fcw_A Chaperone protein CLPB; 95.3 0.012 4E-07 57.1 4.3 60 147-209 17-85 (311)
206 3vfd_A Spastin; ATPase, microt 95.2 0.018 6.2E-07 57.9 5.5 46 147-192 115-172 (389)
207 1d2n_A N-ethylmaleimide-sensit 95.2 0.021 7.1E-07 54.2 5.7 46 147-192 33-88 (272)
208 2r62_A Cell division protease 95.2 0.01 3.5E-07 56.2 3.5 46 147-192 11-68 (268)
209 4b4t_M 26S protease regulatory 95.2 0.018 6.1E-07 58.4 5.3 46 147-192 181-239 (434)
210 4b4t_L 26S protease subunit RP 95.2 0.02 6.9E-07 58.1 5.7 46 147-192 181-239 (437)
211 2qp9_X Vacuolar protein sortin 95.2 0.018 6.2E-07 57.1 5.3 46 147-192 51-108 (355)
212 3c8u_A Fructokinase; YP_612366 95.2 0.019 6.5E-07 52.2 5.0 38 155-192 7-46 (208)
213 2zan_A Vacuolar protein sortin 95.2 0.024 8.3E-07 58.1 6.3 46 147-192 134-191 (444)
214 4b4t_K 26S protease regulatory 95.1 0.019 6.3E-07 58.2 5.2 46 147-192 172-230 (428)
215 2bjv_A PSP operon transcriptio 95.1 0.014 4.9E-07 55.1 4.2 46 147-192 6-53 (265)
216 3nbx_X ATPase RAVA; AAA+ ATPas 95.1 0.033 1.1E-06 57.7 7.0 44 147-192 22-65 (500)
217 3lw7_A Adenylate kinase relate 95.1 0.012 4.2E-07 51.3 3.3 23 169-192 2-24 (179)
218 2hf9_A Probable hydrogenase ni 95.0 0.024 8.3E-07 51.9 5.3 39 154-192 24-62 (226)
219 2z4s_A Chromosomal replication 94.9 0.099 3.4E-06 53.4 10.1 45 148-192 106-154 (440)
220 4b4t_J 26S protease regulatory 94.9 0.02 6.7E-07 57.3 4.6 46 147-192 148-206 (405)
221 1ojl_A Transcriptional regulat 94.9 0.024 8.3E-07 54.9 5.2 46 147-192 2-49 (304)
222 3kb2_A SPBC2 prophage-derived 94.9 0.015 5.2E-07 50.6 3.4 24 169-192 2-25 (173)
223 4b4t_H 26S protease regulatory 94.8 0.025 8.6E-07 57.4 5.3 46 147-192 209-267 (467)
224 2kjq_A DNAA-related protein; s 94.8 0.013 4.6E-07 50.2 2.7 39 167-208 35-73 (149)
225 1qhx_A CPT, protein (chloramph 94.8 0.017 5.9E-07 50.8 3.5 24 169-192 4-27 (178)
226 2wsm_A Hydrogenase expression/ 94.7 0.024 8.2E-07 51.7 4.4 44 149-192 11-54 (221)
227 2ga8_A Hypothetical 39.9 kDa p 94.7 0.036 1.2E-06 54.4 5.8 43 150-192 2-48 (359)
228 2r44_A Uncharacterized protein 94.7 0.024 8.2E-07 55.5 4.6 44 147-192 27-70 (331)
229 3vaa_A Shikimate kinase, SK; s 94.6 0.019 6.6E-07 51.7 3.4 26 167-192 24-49 (199)
230 4b4t_I 26S protease regulatory 94.6 0.034 1.2E-06 55.9 5.4 46 147-192 182-240 (437)
231 2cvh_A DNA repair and recombin 94.5 0.11 3.9E-06 47.0 8.6 46 167-218 19-64 (220)
232 1ixz_A ATP-dependent metallopr 94.5 0.046 1.6E-06 51.2 6.0 46 147-192 16-73 (254)
233 1zp6_A Hypothetical protein AT 94.5 0.02 6.7E-07 51.0 3.3 26 167-192 8-33 (191)
234 1ly1_A Polynucleotide kinase; 94.5 0.024 8.1E-07 49.8 3.7 22 169-190 3-24 (181)
235 1kag_A SKI, shikimate kinase I 94.5 0.019 6.5E-07 50.2 3.1 24 169-192 5-28 (173)
236 1kgd_A CASK, peripheral plasma 94.5 0.023 7.7E-07 50.3 3.5 25 168-192 5-29 (180)
237 1odf_A YGR205W, hypothetical 3 94.3 0.043 1.5E-06 52.6 5.4 27 166-192 29-55 (290)
238 3trf_A Shikimate kinase, SK; a 94.3 0.024 8.2E-07 50.2 3.4 25 168-192 5-29 (185)
239 1nks_A Adenylate kinase; therm 94.3 0.025 8.4E-07 50.3 3.5 24 169-192 2-25 (194)
240 3hws_A ATP-dependent CLP prote 94.3 0.041 1.4E-06 54.6 5.4 45 148-192 16-75 (363)
241 3uie_A Adenylyl-sulfate kinase 94.3 0.031 1.1E-06 50.3 4.1 28 165-192 22-49 (200)
242 1um8_A ATP-dependent CLP prote 94.3 0.046 1.6E-06 54.6 5.6 46 147-192 21-96 (376)
243 2px0_A Flagellar biosynthesis 94.3 0.15 5.2E-06 49.0 9.1 84 167-255 104-188 (296)
244 3t61_A Gluconokinase; PSI-biol 94.2 0.023 7.8E-07 51.2 3.0 25 168-192 18-42 (202)
245 1kht_A Adenylate kinase; phosp 94.2 0.027 9.1E-07 50.0 3.4 24 169-192 4-27 (192)
246 1iy2_A ATP-dependent metallopr 94.2 0.063 2.1E-06 51.1 6.1 45 147-192 40-97 (278)
247 4eun_A Thermoresistant glucoki 94.1 0.03 1E-06 50.4 3.6 27 166-192 27-53 (200)
248 2bbw_A Adenylate kinase 4, AK4 94.1 0.029 9.8E-07 52.4 3.6 26 167-192 26-51 (246)
249 4gt6_A Cell surface protein; l 94.1 0.11 3.6E-06 52.2 8.1 76 382-474 287-365 (394)
250 1l8q_A Chromosomal replication 94.1 0.063 2.2E-06 52.3 6.2 37 156-192 23-61 (324)
251 1knq_A Gluconate kinase; ALFA/ 94.1 0.032 1.1E-06 48.9 3.7 25 168-192 8-32 (175)
252 2rhm_A Putative kinase; P-loop 94.1 0.032 1.1E-06 49.7 3.7 25 168-192 5-29 (193)
253 2yvu_A Probable adenylyl-sulfa 94.1 0.034 1.2E-06 49.3 3.9 26 167-192 12-37 (186)
254 2jaq_A Deoxyguanosine kinase; 94.1 0.029 1E-06 50.3 3.4 23 170-192 2-24 (205)
255 3iij_A Coilin-interacting nucl 94.0 0.029 9.8E-07 49.5 3.2 25 168-192 11-35 (180)
256 2c9o_A RUVB-like 1; hexameric 94.0 0.061 2.1E-06 55.3 6.1 46 147-192 37-87 (456)
257 1g8p_A Magnesium-chelatase 38 94.0 0.027 9.1E-07 55.5 3.3 46 147-192 24-69 (350)
258 3tr0_A Guanylate kinase, GMP k 94.0 0.03 1E-06 50.4 3.4 25 168-192 7-31 (205)
259 2bdt_A BH3686; alpha-beta prot 94.0 0.034 1.2E-06 49.4 3.7 24 169-192 3-26 (189)
260 1tev_A UMP-CMP kinase; ploop, 94.0 0.036 1.2E-06 49.3 3.7 25 168-192 3-27 (196)
261 3hu3_A Transitional endoplasmi 93.9 0.053 1.8E-06 56.1 5.5 46 147-192 204-262 (489)
262 2qor_A Guanylate kinase; phosp 93.9 0.031 1.1E-06 50.5 3.3 26 167-192 11-36 (204)
263 1ukz_A Uridylate kinase; trans 93.9 0.04 1.4E-06 49.6 4.0 26 167-192 14-39 (203)
264 3a00_A Guanylate kinase, GMP k 93.9 0.03 1E-06 49.8 3.0 24 169-192 2-25 (186)
265 2c95_A Adenylate kinase 1; tra 93.8 0.035 1.2E-06 49.5 3.4 26 167-192 8-33 (196)
266 1via_A Shikimate kinase; struc 93.8 0.031 1.1E-06 49.0 3.0 23 170-192 6-28 (175)
267 1uf9_A TT1252 protein; P-loop, 93.8 0.042 1.4E-06 49.3 3.9 26 166-191 6-31 (203)
268 3tau_A Guanylate kinase, GMP k 93.8 0.038 1.3E-06 50.1 3.6 26 167-192 7-32 (208)
269 3asz_A Uridine kinase; cytidin 93.8 0.04 1.4E-06 49.9 3.7 26 167-192 5-30 (211)
270 1ye8_A Protein THEP1, hypothet 93.7 0.037 1.3E-06 48.9 3.4 23 170-192 2-24 (178)
271 1zuh_A Shikimate kinase; alpha 93.7 0.038 1.3E-06 48.1 3.4 26 167-192 6-31 (168)
272 3fwy_A Light-independent proto 93.7 0.037 1.3E-06 53.8 3.6 41 166-209 46-86 (314)
273 2if2_A Dephospho-COA kinase; a 93.7 0.035 1.2E-06 50.0 3.2 22 169-190 2-23 (204)
274 2plr_A DTMP kinase, probable t 93.7 0.044 1.5E-06 49.5 3.9 25 168-192 4-28 (213)
275 2j41_A Guanylate kinase; GMP, 93.7 0.041 1.4E-06 49.5 3.7 25 168-192 6-30 (207)
276 1io0_A Tropomodulin; LRR prote 93.7 0.014 4.7E-07 52.0 0.5 36 323-358 36-75 (185)
277 1y63_A LMAJ004144AAA protein; 93.7 0.043 1.5E-06 48.7 3.7 25 167-191 9-33 (184)
278 2ze6_A Isopentenyl transferase 93.7 0.04 1.4E-06 51.7 3.6 24 169-192 2-25 (253)
279 1cke_A CK, MSSA, protein (cyti 93.7 0.038 1.3E-06 50.6 3.4 24 169-192 6-29 (227)
280 4gp7_A Metallophosphoesterase; 93.6 0.034 1.2E-06 48.7 2.8 23 167-189 8-30 (171)
281 3cm0_A Adenylate kinase; ATP-b 93.5 0.046 1.6E-06 48.3 3.6 25 168-192 4-28 (186)
282 1n0w_A DNA repair protein RAD5 93.5 0.18 6E-06 46.5 7.9 57 167-225 23-83 (243)
283 2iyv_A Shikimate kinase, SK; t 93.5 0.035 1.2E-06 49.1 2.8 24 169-192 3-26 (184)
284 1jjv_A Dephospho-COA kinase; P 93.5 0.043 1.5E-06 49.5 3.5 22 169-190 3-24 (206)
285 3tqc_A Pantothenate kinase; bi 93.5 0.081 2.8E-06 51.4 5.6 26 167-192 91-116 (321)
286 3t15_A Ribulose bisphosphate c 93.4 0.049 1.7E-06 52.3 3.9 26 167-192 35-60 (293)
287 2bwj_A Adenylate kinase 5; pho 93.4 0.043 1.5E-06 49.0 3.3 25 168-192 12-36 (199)
288 3dm5_A SRP54, signal recogniti 93.4 0.31 1.1E-05 49.4 9.9 26 167-192 99-124 (443)
289 1lvg_A Guanylate kinase, GMP k 93.4 0.039 1.3E-06 49.7 3.0 25 168-192 4-28 (198)
290 1e6c_A Shikimate kinase; phosp 93.4 0.04 1.4E-06 48.0 3.0 24 169-192 3-26 (173)
291 3kl4_A SRP54, signal recogniti 93.4 0.39 1.3E-05 48.6 10.6 85 167-255 96-185 (433)
292 4h09_A Hypothetical leucine ri 93.4 0.24 8.4E-06 49.1 9.2 76 323-413 217-294 (379)
293 2qt1_A Nicotinamide riboside k 93.4 0.048 1.6E-06 49.3 3.5 26 167-192 20-45 (207)
294 1qf9_A UMP/CMP kinase, protein 93.4 0.049 1.7E-06 48.3 3.6 25 168-192 6-30 (194)
295 1ex7_A Guanylate kinase; subst 93.3 0.044 1.5E-06 48.7 3.2 24 169-192 2-25 (186)
296 2ce7_A Cell division protein F 93.3 0.072 2.5E-06 54.8 5.2 46 147-192 16-73 (476)
297 2pbr_A DTMP kinase, thymidylat 93.3 0.048 1.6E-06 48.4 3.4 23 170-192 2-24 (195)
298 1gvn_B Zeta; postsegregational 93.3 0.083 2.8E-06 50.6 5.3 26 167-192 32-57 (287)
299 2pt5_A Shikimate kinase, SK; a 93.3 0.05 1.7E-06 47.1 3.5 23 170-192 2-24 (168)
300 2vli_A Antibiotic resistance p 93.3 0.034 1.2E-06 49.0 2.4 25 168-192 5-29 (183)
301 3a4m_A L-seryl-tRNA(SEC) kinas 93.3 0.056 1.9E-06 50.9 4.0 25 168-192 4-28 (260)
302 1qvr_A CLPB protein; coiled co 93.3 0.4 1.4E-05 53.4 11.4 45 148-192 559-612 (854)
303 2cdn_A Adenylate kinase; phosp 93.2 0.053 1.8E-06 48.7 3.6 26 167-192 19-44 (201)
304 3ney_A 55 kDa erythrocyte memb 93.2 0.057 1.9E-06 48.5 3.7 26 167-192 18-43 (197)
305 3hr8_A Protein RECA; alpha and 93.2 0.33 1.1E-05 47.8 9.5 81 167-255 60-145 (356)
306 4h09_A Hypothetical leucine ri 93.2 0.31 1E-05 48.4 9.5 76 323-412 240-317 (379)
307 1g41_A Heat shock protein HSLU 93.2 0.068 2.3E-06 54.3 4.6 46 147-192 15-74 (444)
308 2grj_A Dephospho-COA kinase; T 93.2 0.059 2E-06 48.2 3.7 26 167-192 11-36 (192)
309 1nn5_A Similar to deoxythymidy 93.1 0.053 1.8E-06 49.1 3.5 26 167-192 8-33 (215)
310 1uj2_A Uridine-cytidine kinase 93.1 0.063 2.1E-06 50.3 4.0 26 167-192 21-46 (252)
311 2wwf_A Thymidilate kinase, put 93.1 0.055 1.9E-06 48.9 3.5 25 168-192 10-34 (212)
312 1xjc_A MOBB protein homolog; s 93.1 0.06 2E-06 47.0 3.5 26 167-192 3-28 (169)
313 4e22_A Cytidylate kinase; P-lo 93.0 0.056 1.9E-06 50.7 3.5 26 167-192 26-51 (252)
314 3aez_A Pantothenate kinase; tr 93.0 0.064 2.2E-06 52.0 4.0 27 166-192 88-114 (312)
315 2z0h_A DTMP kinase, thymidylat 93.0 0.058 2E-06 48.0 3.5 23 170-192 2-24 (197)
316 2jeo_A Uridine-cytidine kinase 93.0 0.067 2.3E-06 49.8 4.1 26 167-192 24-49 (245)
317 1io0_A Tropomodulin; LRR prote 93.0 0.023 8E-07 50.5 0.8 13 383-395 65-77 (185)
318 2v54_A DTMP kinase, thymidylat 93.0 0.062 2.1E-06 48.2 3.7 25 168-192 4-28 (204)
319 2p5t_B PEZT; postsegregational 93.0 0.078 2.7E-06 49.7 4.5 26 167-192 31-56 (253)
320 1znw_A Guanylate kinase, GMP k 93.0 0.058 2E-06 48.8 3.5 26 167-192 19-44 (207)
321 1ypw_A Transitional endoplasmi 92.9 0.048 1.6E-06 60.2 3.4 46 147-192 204-262 (806)
322 2xxa_A Signal recognition part 92.9 0.72 2.5E-05 46.7 11.8 87 167-255 99-189 (433)
323 2zr9_A Protein RECA, recombina 92.9 0.35 1.2E-05 47.6 9.2 81 167-255 60-145 (349)
324 1gtv_A TMK, thymidylate kinase 92.9 0.032 1.1E-06 50.6 1.5 24 169-192 1-24 (214)
325 1htw_A HI0065; nucleotide-bind 92.9 0.071 2.4E-06 46.1 3.7 27 166-192 31-57 (158)
326 3umf_A Adenylate kinase; rossm 92.9 0.07 2.4E-06 48.7 3.8 26 167-192 28-53 (217)
327 1zd8_A GTP:AMP phosphotransfer 92.9 0.059 2E-06 49.5 3.4 25 168-192 7-31 (227)
328 1z6g_A Guanylate kinase; struc 92.8 0.054 1.8E-06 49.5 3.0 26 167-192 22-47 (218)
329 2dhr_A FTSH; AAA+ protein, hex 92.7 0.13 4.6E-06 53.1 6.2 46 147-192 31-88 (499)
330 1aky_A Adenylate kinase; ATP:A 92.7 0.069 2.4E-06 48.7 3.6 25 168-192 4-28 (220)
331 4a74_A DNA repair and recombin 92.6 0.23 7.8E-06 45.2 7.1 47 167-214 24-74 (231)
332 3fb4_A Adenylate kinase; psych 92.6 0.071 2.4E-06 48.4 3.5 23 170-192 2-24 (216)
333 2pez_A Bifunctional 3'-phospho 92.5 0.079 2.7E-06 46.5 3.6 25 168-192 5-29 (179)
334 3p32_A Probable GTPase RV1496/ 92.5 0.15 5.3E-06 50.3 6.1 37 156-192 65-103 (355)
335 1m7g_A Adenylylsulfate kinase; 92.5 0.077 2.6E-06 48.1 3.7 27 166-192 23-49 (211)
336 1vht_A Dephospho-COA kinase; s 92.5 0.085 2.9E-06 48.0 3.9 23 168-190 4-26 (218)
337 4fs7_A Uncharacterized protein 92.5 1.2 3.9E-05 44.5 12.7 60 437-500 315-375 (394)
338 3dl0_A Adenylate kinase; phosp 92.5 0.077 2.6E-06 48.2 3.5 23 170-192 2-24 (216)
339 1s96_A Guanylate kinase, GMP k 92.4 0.075 2.6E-06 48.7 3.4 26 167-192 15-40 (219)
340 1zak_A Adenylate kinase; ATP:A 92.4 0.066 2.3E-06 49.0 3.0 25 168-192 5-29 (222)
341 3tif_A Uncharacterized ABC tra 92.4 0.093 3.2E-06 48.6 4.1 35 167-205 30-64 (235)
342 1rj9_A FTSY, signal recognitio 92.3 0.081 2.8E-06 51.1 3.7 26 167-192 101-126 (304)
343 2onk_A Molybdate/tungstate ABC 92.3 0.11 3.9E-06 48.1 4.6 25 167-192 24-48 (240)
344 3tlx_A Adenylate kinase 2; str 92.3 0.092 3.1E-06 48.9 3.9 27 166-192 27-53 (243)
345 2i3b_A HCR-ntpase, human cance 92.2 0.074 2.5E-06 47.4 3.0 23 170-192 3-25 (189)
346 2j37_W Signal recognition part 92.2 1.1 3.9E-05 46.1 12.3 26 167-192 100-125 (504)
347 2f6r_A COA synthase, bifunctio 92.2 0.079 2.7E-06 50.6 3.4 23 167-189 74-96 (281)
348 3k1j_A LON protease, ATP-depen 92.2 0.11 3.7E-06 55.5 4.7 44 147-192 41-84 (604)
349 2qgz_A Helicase loader, putati 92.1 0.14 4.7E-06 49.6 5.1 40 153-192 134-176 (308)
350 2pcj_A ABC transporter, lipopr 92.1 0.1 3.4E-06 48.0 3.9 35 167-205 29-63 (224)
351 3ake_A Cytidylate kinase; CMP 92.0 0.091 3.1E-06 47.2 3.5 23 170-192 4-26 (208)
352 3gfo_A Cobalt import ATP-bindi 92.0 0.11 3.7E-06 49.4 4.0 35 167-205 33-67 (275)
353 1b0u_A Histidine permease; ABC 92.0 0.11 3.7E-06 49.0 4.0 35 167-205 31-65 (262)
354 2ehv_A Hypothetical protein PH 91.9 0.086 3E-06 48.9 3.3 23 167-189 29-51 (251)
355 3nwj_A ATSK2; P loop, shikimat 91.9 0.081 2.8E-06 49.5 3.0 25 168-192 48-72 (250)
356 1u94_A RECA protein, recombina 91.9 0.59 2E-05 46.1 9.4 45 167-214 62-106 (356)
357 3e70_C DPA, signal recognition 91.8 0.18 6E-06 49.2 5.5 27 166-192 127-153 (328)
358 3d3q_A TRNA delta(2)-isopenten 91.8 0.11 3.6E-06 50.9 3.8 24 169-192 8-31 (340)
359 4gt6_A Cell surface protein; l 91.8 0.39 1.3E-05 48.0 8.2 101 323-452 265-367 (394)
360 1sgw_A Putative ABC transporte 91.8 0.11 3.7E-06 47.4 3.6 26 167-192 34-59 (214)
361 1ji0_A ABC transporter; ATP bi 91.8 0.12 4.2E-06 47.9 4.1 26 167-192 31-56 (240)
362 3cf2_A TER ATPase, transitiona 91.7 0.11 3.7E-06 56.9 4.1 46 147-192 204-262 (806)
363 1sq5_A Pantothenate kinase; P- 91.7 0.11 3.7E-06 50.3 3.9 26 167-192 79-104 (308)
364 3lnc_A Guanylate kinase, GMP k 91.7 0.064 2.2E-06 49.4 2.1 25 168-192 27-52 (231)
365 3hjn_A DTMP kinase, thymidylat 91.7 0.2 7E-06 44.8 5.4 83 170-255 2-87 (197)
366 3b9q_A Chloroplast SRP recepto 91.7 0.11 3.8E-06 50.0 3.8 26 167-192 99-124 (302)
367 2pze_A Cystic fibrosis transme 91.7 0.13 4.3E-06 47.5 4.0 26 167-192 33-58 (229)
368 2ff7_A Alpha-hemolysin translo 91.7 0.13 4.3E-06 48.1 4.1 35 167-205 34-68 (247)
369 3r20_A Cytidylate kinase; stru 91.7 0.11 3.6E-06 48.1 3.5 25 168-192 9-33 (233)
370 1np6_A Molybdopterin-guanine d 91.7 0.11 3.9E-06 45.5 3.6 25 168-192 6-30 (174)
371 2olj_A Amino acid ABC transpor 91.6 0.13 4.3E-06 48.6 4.0 35 167-205 49-83 (263)
372 4g1u_C Hemin import ATP-bindin 91.6 0.13 4.3E-06 48.7 4.0 26 167-192 36-61 (266)
373 2xb4_A Adenylate kinase; ATP-b 91.6 0.11 3.7E-06 47.6 3.4 23 170-192 2-24 (223)
374 1g6h_A High-affinity branched- 91.5 0.13 4.5E-06 48.3 4.1 35 167-205 32-66 (257)
375 2f1r_A Molybdopterin-guanine d 91.5 0.069 2.4E-06 46.8 2.0 24 169-192 3-26 (171)
376 1vpl_A ABC transporter, ATP-bi 91.5 0.13 4.6E-06 48.2 4.0 35 167-205 40-74 (256)
377 1tue_A Replication protein E1; 91.5 0.16 5.4E-06 45.7 4.3 37 156-192 45-82 (212)
378 3be4_A Adenylate kinase; malar 91.5 0.1 3.6E-06 47.5 3.3 24 169-192 6-29 (217)
379 2ixe_A Antigen peptide transpo 91.5 0.13 4.6E-06 48.6 4.1 35 167-205 44-78 (271)
380 1e4v_A Adenylate kinase; trans 91.5 0.11 3.7E-06 47.2 3.3 23 170-192 2-24 (214)
381 3pxi_A Negative regulator of g 91.4 0.2 6.9E-06 55.0 6.0 60 147-209 491-559 (758)
382 2z43_A DNA repair and recombin 91.4 0.4 1.4E-05 46.6 7.6 58 167-226 106-167 (324)
383 1ak2_A Adenylate kinase isoenz 91.4 0.12 4.1E-06 47.6 3.6 25 168-192 16-40 (233)
384 1yrb_A ATP(GTP)binding protein 91.4 0.13 4.4E-06 48.2 3.9 26 167-192 13-38 (262)
385 2ocp_A DGK, deoxyguanosine kin 91.4 0.13 4.3E-06 47.7 3.8 25 168-192 2-26 (241)
386 3m6a_A ATP-dependent protease 91.4 0.13 4.5E-06 54.0 4.3 45 148-192 82-132 (543)
387 2ffh_A Protein (FFH); SRP54, s 91.4 0.96 3.3E-05 45.6 10.5 84 168-255 98-186 (425)
388 4fs7_A Uncharacterized protein 91.3 0.4 1.4E-05 47.9 7.7 120 323-475 253-375 (394)
389 2yhs_A FTSY, cell division pro 91.3 0.2 6.7E-06 51.5 5.4 42 167-212 292-333 (503)
390 1j8m_F SRP54, signal recogniti 91.3 0.65 2.2E-05 44.5 8.8 85 168-255 98-186 (297)
391 3b85_A Phosphate starvation-in 91.3 0.082 2.8E-06 47.9 2.3 24 168-191 22-45 (208)
392 1oix_A RAS-related protein RAB 91.2 0.12 4E-06 45.9 3.3 25 168-192 29-53 (191)
393 1mv5_A LMRA, multidrug resista 91.2 0.14 4.6E-06 47.7 3.8 26 167-192 27-52 (243)
394 4tmk_A Protein (thymidylate ki 91.2 0.27 9.2E-06 44.7 5.7 52 169-222 4-55 (213)
395 2yz2_A Putative ABC transporte 91.2 0.15 5E-06 48.2 4.1 26 167-192 32-57 (266)
396 3end_A Light-independent proto 91.2 0.13 4.5E-06 49.6 3.8 44 166-212 39-82 (307)
397 2d2e_A SUFC protein; ABC-ATPas 91.1 0.12 4.1E-06 48.3 3.3 25 167-191 28-52 (250)
398 1xp8_A RECA protein, recombina 91.1 0.74 2.5E-05 45.5 9.2 74 167-248 73-149 (366)
399 2cbz_A Multidrug resistance-as 91.1 0.12 4E-06 48.0 3.2 26 167-192 30-55 (237)
400 3lv8_A DTMP kinase, thymidylat 91.1 0.28 9.7E-06 45.3 5.8 37 168-206 27-63 (236)
401 2dyk_A GTP-binding protein; GT 91.1 0.15 5.1E-06 43.3 3.6 24 169-192 2-25 (161)
402 4eaq_A DTMP kinase, thymidylat 91.0 0.23 7.9E-06 45.7 5.1 26 167-192 25-50 (229)
403 2ihy_A ABC transporter, ATP-bi 91.0 0.16 5.3E-06 48.4 4.0 35 167-205 46-80 (279)
404 1vma_A Cell division protein F 91.0 0.15 5E-06 49.3 3.8 26 167-192 103-128 (306)
405 2zu0_C Probable ATP-dependent 90.9 0.13 4.3E-06 48.7 3.3 25 167-191 45-69 (267)
406 2f9l_A RAB11B, member RAS onco 90.9 0.13 4.4E-06 45.9 3.2 25 168-192 5-29 (199)
407 3crm_A TRNA delta(2)-isopenten 90.9 0.15 5E-06 49.5 3.7 24 169-192 6-29 (323)
408 1v5w_A DMC1, meiotic recombina 90.9 0.56 1.9E-05 45.9 8.1 57 167-225 121-181 (343)
409 2wji_A Ferrous iron transport 90.8 0.14 4.8E-06 44.1 3.3 23 169-191 4-26 (165)
410 3exa_A TRNA delta(2)-isopenten 90.8 0.17 5.7E-06 48.8 4.0 25 168-192 3-27 (322)
411 2og2_A Putative signal recogni 90.8 0.15 5.3E-06 50.2 3.8 26 167-192 156-181 (359)
412 3sr0_A Adenylate kinase; phosp 90.7 0.15 5.2E-06 46.0 3.5 23 170-192 2-24 (206)
413 4edh_A DTMP kinase, thymidylat 90.6 0.41 1.4E-05 43.4 6.3 25 168-192 6-30 (213)
414 1zu4_A FTSY; GTPase, signal re 90.6 0.16 5.6E-06 49.3 3.9 26 167-192 104-129 (320)
415 2e87_A Hypothetical protein PH 90.6 9.6 0.00033 37.2 16.9 26 167-192 166-191 (357)
416 2ce2_X GTPase HRAS; signaling 90.5 0.14 4.8E-06 43.5 3.0 23 170-192 5-27 (166)
417 3a8t_A Adenylate isopentenyltr 90.5 0.17 5.7E-06 49.3 3.7 26 167-192 39-64 (339)
418 4hlc_A DTMP kinase, thymidylat 90.5 0.51 1.7E-05 42.5 6.8 24 169-192 3-26 (205)
419 1a7j_A Phosphoribulokinase; tr 90.4 0.077 2.6E-06 50.9 1.3 26 167-192 4-29 (290)
420 2wjg_A FEOB, ferrous iron tran 90.4 0.18 6E-06 44.3 3.6 24 168-191 7-30 (188)
421 1ltq_A Polynucleotide kinase; 90.4 0.17 5.7E-06 48.6 3.6 24 169-192 3-26 (301)
422 3bh0_A DNAB-like replicative h 90.3 0.56 1.9E-05 45.4 7.4 53 167-224 67-119 (315)
423 2ghi_A Transport protein; mult 90.3 0.15 5.1E-06 48.0 3.2 26 167-192 45-70 (260)
424 2vp4_A Deoxynucleoside kinase; 90.3 0.11 3.7E-06 47.9 2.2 25 167-191 19-43 (230)
425 2qi9_C Vitamin B12 import ATP- 90.3 0.15 5.1E-06 47.6 3.1 26 167-192 25-50 (249)
426 3upu_A ATP-dependent DNA helic 90.3 0.34 1.2E-05 49.6 6.1 40 152-192 30-69 (459)
427 2w0m_A SSO2452; RECA, SSPF, un 90.3 0.16 5.4E-06 46.4 3.3 48 167-219 22-69 (235)
428 2zej_A Dardarin, leucine-rich 90.2 0.15 5E-06 44.9 2.9 22 170-191 4-25 (184)
429 1z2a_A RAS-related protein RAB 90.2 0.16 5.6E-06 43.4 3.1 25 168-192 5-29 (168)
430 1q3t_A Cytidylate kinase; nucl 90.2 0.18 6.3E-06 46.5 3.6 26 167-192 15-40 (236)
431 3con_A GTPase NRAS; structural 90.2 0.16 5.6E-06 44.6 3.2 24 169-192 22-45 (190)
432 1ls1_A Signal recognition part 90.2 0.19 6.5E-06 48.2 3.8 25 168-192 98-122 (295)
433 2nq2_C Hypothetical ABC transp 90.0 0.16 5.4E-06 47.6 3.1 26 167-192 30-55 (253)
434 2i1q_A DNA repair and recombin 90.0 0.58 2E-05 45.3 7.3 58 167-226 97-168 (322)
435 2gno_A DNA polymerase III, gam 90.0 0.29 1E-05 47.2 5.0 41 151-191 1-41 (305)
436 3lda_A DNA repair protein RAD5 89.9 0.69 2.4E-05 46.3 7.8 59 167-226 177-238 (400)
437 1pzn_A RAD51, DNA repair and r 89.9 0.49 1.7E-05 46.6 6.7 48 167-215 130-181 (349)
438 2eyu_A Twitching motility prot 89.9 0.2 6.8E-06 47.1 3.6 27 166-192 23-49 (261)
439 3nh6_A ATP-binding cassette SU 89.9 0.19 6.4E-06 48.5 3.5 26 167-192 79-104 (306)
440 3sop_A Neuronal-specific septi 89.9 0.17 5.9E-06 47.8 3.2 23 170-192 4-26 (270)
441 2v9p_A Replication protein E1; 89.8 0.18 6.3E-06 48.5 3.4 27 166-192 124-150 (305)
442 4gzl_A RAS-related C3 botulinu 89.8 0.2 6.9E-06 44.9 3.5 38 155-192 17-54 (204)
443 1r6b_X CLPA protein; AAA+, N-t 89.8 0.33 1.1E-05 53.2 5.9 46 147-192 458-512 (758)
444 1u8z_A RAS-related protein RAL 89.8 0.19 6.4E-06 42.9 3.2 24 169-192 5-28 (168)
445 3foz_A TRNA delta(2)-isopenten 89.8 0.22 7.5E-06 47.8 3.8 25 168-192 10-34 (316)
446 1zj6_A ADP-ribosylation factor 89.7 0.32 1.1E-05 42.6 4.7 35 157-192 6-40 (187)
447 1svm_A Large T antigen; AAA+ f 89.6 0.34 1.1E-05 48.2 5.2 27 166-192 167-193 (377)
448 1p9r_A General secretion pathw 89.6 0.46 1.6E-05 47.9 6.3 29 164-192 163-191 (418)
449 2vhj_A Ntpase P4, P4; non- hyd 89.5 0.22 7.7E-06 48.0 3.7 24 168-191 123-146 (331)
450 2ged_A SR-beta, signal recogni 89.5 0.23 7.8E-06 43.8 3.6 26 167-192 47-72 (193)
451 2nzj_A GTP-binding protein REM 89.5 0.17 5.9E-06 43.6 2.7 25 168-192 4-28 (175)
452 1p5z_B DCK, deoxycytidine kina 89.5 0.13 4.5E-06 48.4 2.0 26 167-192 23-48 (263)
453 1c1y_A RAS-related protein RAP 89.5 0.2 7E-06 42.7 3.1 23 170-192 5-27 (167)
454 1g8f_A Sulfate adenylyltransfe 89.4 0.36 1.2E-05 49.9 5.4 44 149-192 374-419 (511)
455 3zvl_A Bifunctional polynucleo 89.4 0.19 6.4E-06 50.9 3.3 27 166-192 256-282 (416)
456 1ek0_A Protein (GTP-binding pr 89.3 0.21 7.3E-06 42.6 3.2 23 170-192 5-27 (170)
457 3t1o_A Gliding protein MGLA; G 89.3 0.22 7.4E-06 43.9 3.3 25 168-192 14-38 (198)
458 1z08_A RAS-related protein RAB 89.2 0.21 7.3E-06 42.8 3.1 24 169-192 7-30 (170)
459 1z0j_A RAB-22, RAS-related pro 89.2 0.22 7.4E-06 42.7 3.2 24 169-192 7-30 (170)
460 1r8s_A ADP-ribosylation factor 89.2 0.23 7.9E-06 42.3 3.3 22 171-192 3-24 (164)
461 3io5_A Recombination and repai 89.2 0.87 3E-05 43.8 7.5 54 169-228 29-82 (333)
462 1kao_A RAP2A; GTP-binding prot 89.1 0.22 7.6E-06 42.3 3.2 24 169-192 4-27 (167)
463 1nlf_A Regulatory protein REPA 89.1 0.2 6.7E-06 47.6 3.0 26 167-192 29-54 (279)
464 1m7b_A RND3/RHOE small GTP-bin 89.1 0.21 7.1E-06 43.8 3.0 25 168-192 7-31 (184)
465 1fzq_A ADP-ribosylation factor 89.1 0.3 1E-05 42.7 4.1 26 166-191 14-39 (181)
466 2erx_A GTP-binding protein DI- 89.0 0.21 7.3E-06 42.7 3.0 24 169-192 4-27 (172)
467 2lkc_A Translation initiation 89.0 0.25 8.5E-06 42.7 3.4 26 167-192 7-32 (178)
468 1moz_A ARL1, ADP-ribosylation 89.0 0.23 7.7E-06 43.3 3.2 33 158-190 7-40 (183)
469 1cp2_A CP2, nitrogenase iron p 89.0 0.22 7.7E-06 46.7 3.3 38 169-209 2-39 (269)
470 1ky3_A GTP-binding protein YPT 89.0 0.23 7.8E-06 43.1 3.2 26 167-192 7-32 (182)
471 2pjz_A Hypothetical protein ST 89.0 0.22 7.4E-06 46.9 3.1 24 168-191 30-53 (263)
472 3fvq_A Fe(3+) IONS import ATP- 89.0 0.32 1.1E-05 47.9 4.4 26 167-192 29-54 (359)
473 3tui_C Methionine import ATP-b 88.9 0.34 1.1E-05 47.8 4.6 26 167-192 53-78 (366)
474 3ihw_A Centg3; RAS, centaurin, 88.9 0.23 7.9E-06 43.7 3.2 25 168-192 20-44 (184)
475 2fn4_A P23, RAS-related protei 88.8 0.22 7.6E-06 43.1 3.0 26 167-192 8-33 (181)
476 2gj8_A MNME, tRNA modification 88.8 0.21 7.2E-06 43.4 2.8 24 169-192 5-28 (172)
477 3kta_A Chromosome segregation 88.8 0.24 8.1E-06 43.5 3.1 24 168-191 26-49 (182)
478 1nrj_B SR-beta, signal recogni 88.8 0.28 9.7E-06 44.2 3.7 26 167-192 11-36 (218)
479 1wms_A RAB-9, RAB9, RAS-relate 88.8 0.24 8.3E-06 42.8 3.2 25 168-192 7-31 (177)
480 1f6b_A SAR1; gtpases, N-termin 88.7 0.34 1.2E-05 43.1 4.2 32 159-190 15-47 (198)
481 3c5c_A RAS-like protein 12; GD 88.7 0.24 8.2E-06 43.6 3.2 25 168-192 21-45 (187)
482 2r8r_A Sensor protein; KDPD, P 88.7 0.34 1.1E-05 44.3 4.1 23 170-192 8-30 (228)
483 2dr3_A UPF0273 protein PH0284; 88.7 0.34 1.2E-05 44.6 4.3 48 167-219 22-69 (247)
484 2hxs_A RAB-26, RAS-related pro 88.7 0.26 8.9E-06 42.6 3.3 25 168-192 6-30 (178)
485 1r2q_A RAS-related protein RAB 88.6 0.25 8.7E-06 42.2 3.2 24 169-192 7-30 (170)
486 3kkq_A RAS-related protein M-R 88.6 0.25 8.6E-06 43.0 3.2 25 168-192 18-42 (183)
487 2v3c_C SRP54, signal recogniti 88.6 0.16 5.5E-06 51.6 2.1 25 168-192 99-123 (432)
488 1z0f_A RAB14, member RAS oncog 88.6 0.26 8.8E-06 42.6 3.2 25 168-192 15-39 (179)
489 1svi_A GTP-binding protein YSX 88.5 0.24 8.3E-06 43.6 3.1 25 167-191 22-46 (195)
490 1cr0_A DNA primase/helicase; R 88.5 0.24 8.1E-06 47.4 3.2 54 167-224 34-87 (296)
491 3f9v_A Minichromosome maintena 88.5 0.14 4.8E-06 54.4 1.6 46 147-192 295-351 (595)
492 3q72_A GTP-binding protein RAD 88.5 0.23 7.8E-06 42.4 2.7 21 170-190 4-24 (166)
493 2afh_E Nitrogenase iron protei 88.5 0.27 9.3E-06 46.8 3.6 39 168-209 2-40 (289)
494 4dsu_A GTPase KRAS, isoform 2B 88.4 0.26 8.9E-06 43.1 3.2 24 169-192 5-28 (189)
495 2h92_A Cytidylate kinase; ross 88.4 0.25 8.6E-06 44.7 3.2 24 169-192 4-27 (219)
496 1g16_A RAS-related protein SEC 88.4 0.25 8.5E-06 42.3 3.0 24 169-192 4-27 (170)
497 2bbs_A Cystic fibrosis transme 88.4 0.23 8E-06 47.4 3.0 26 167-192 63-88 (290)
498 1m2o_B GTP-binding protein SAR 88.3 0.25 8.6E-06 43.7 3.0 25 168-192 23-47 (190)
499 3gmt_A Adenylate kinase; ssgci 88.3 0.27 9.3E-06 45.1 3.2 25 168-192 8-32 (230)
500 1upt_A ARL1, ADP-ribosylation 88.3 0.27 9.4E-06 42.1 3.2 25 168-192 7-31 (171)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.63 E-value=1.3e-15 Score=152.07 Aligned_cols=163 Identities=20% Similarity=0.247 Sum_probs=118.6
Q ss_pred ccCCCeEEEecCCCCCcccccc--------ccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCC
Q 009534 322 VSNTPSLSLTNCRSLSSLSVLT--------LASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGS 393 (532)
Q Consensus 322 l~~L~~L~l~~c~~l~~l~~~~--------l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c 393 (532)
+++|++|++++|..+..+|... +..+++|+.|+++++ .+..+|.. ...+++|++|++++|
T Consensus 149 l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~-----------l~~l~~L~~L~L~~N 216 (328)
T 4fcg_A 149 LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPAS-----------IANLQNLKSLKIRNS 216 (328)
T ss_dssp CTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGG-----------GGGCTTCCEEEEESS
T ss_pred CcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHh-----------hcCCCCCCEEEccCC
Confidence 3445555555555555554331 122555555555554 33334332 335888999999988
Q ss_pred ccccCCc-hhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccccCCCCcCCCCccEEe
Q 009534 394 KLRHVTW-LILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIYPRALPFPHLKELH 472 (532)
Q Consensus 394 ~L~~l~~-l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~ 472 (532)
.+..+|. +..+++|+.|++++|.....++. .+..+++|++|++++|..+..+|.....+++|+.|+
T Consensus 217 ~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~-------------~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ 283 (328)
T 4fcg_A 217 PLSALGPAIHHLPKLEELDLRGCTALRNYPP-------------IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLD 283 (328)
T ss_dssp CCCCCCGGGGGCTTCCEEECTTCTTCCBCCC-------------CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEE
T ss_pred CCCcCchhhccCCCCCEEECcCCcchhhhHH-------------HhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEe
Confidence 7777764 77888999999988887777766 788899999999999999999998889999999999
Q ss_pred ecCCCCCCCCCCCCCCCCCceeEEecchhhhhhcccCc
Q 009534 473 VTLCPKLKKLPFDCTSGHERKLIIKGQEEWWNNLQWDD 510 (532)
Q Consensus 473 i~~C~~L~~lp~~~~~~l~~L~~~~~~~~w~~~l~w~~ 510 (532)
+++|+.+..+|...... +.|+...++..+...+.+..
T Consensus 284 L~~n~~~~~iP~~l~~L-~~L~~l~l~~~~~~~l~~~~ 320 (328)
T 4fcg_A 284 LRGCVNLSRLPSLIAQL-PANCIILVPPHLQAQLDQHR 320 (328)
T ss_dssp CTTCTTCCCCCGGGGGS-CTTCEEECCGGGSCC-----
T ss_pred CCCCCchhhccHHHhhc-cCceEEeCCHHHHHHHhhhh
Confidence 99999999999877666 88999999988877776554
No 2
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.58 E-value=7e-15 Score=156.93 Aligned_cols=108 Identities=19% Similarity=0.123 Sum_probs=90.9
Q ss_pred CcccccHHHHHHHHHHhccC---CceEEEEecCCCCcHHHHHHHHHH--hccCCCCCCCeEEEEEeCCCC--CHHHHHHH
Q 009534 147 PTVVGLQSTLDRVWRCLTEE---PVGIVGLYGMGGVGKTTLLTQINN--SFLHTPNNFDFVIWEVVSRDL--QLGKIQES 219 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~~F~~~~wv~v~~~~--~~~~l~~~ 219 (532)
+..+||++++++|.++|..+ +.++|+|+||||+||||||+.+|+ +. +++.+|++++||++++.+ ++..+++.
T Consensus 128 ~~~~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~~~~ 206 (549)
T 2a5y_B 128 MTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQ-LIGINYDSIVWLKDSGTAPKSTFDLFTD 206 (549)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSS-TBTTTBSEEEEEECCCCSTTHHHHHHHH
T ss_pred CccCCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhH-HHhccCCcEEEEEECCCCCCCHHHHHHH
Confidence 33369999999999999754 689999999999999999999998 45 568899999999999875 89999999
Q ss_pred HHHHhcCCCC-----CCCCCCHHHHHHHHHHHhcCC-cEEEe
Q 009534 220 IAKKIGLCNE-----SWDSKSFDEKAQEIFKTMRNT-KFLIS 255 (532)
Q Consensus 220 i~~~l~~~~~-----~~~~~~~~~~~~~l~~~L~~k-r~LlV 255 (532)
|+.+++.... .....+...+...+++.|+++ |||||
T Consensus 207 il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlV 248 (549)
T 2a5y_B 207 ILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFV 248 (549)
T ss_dssp HHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEE
T ss_pred HHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEE
Confidence 9999986521 112335667789999999996 99999
No 3
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.52 E-value=7.6e-14 Score=139.12 Aligned_cols=189 Identities=23% Similarity=0.313 Sum_probs=144.6
Q ss_pred chhhhcCCccCceeeEEeccchhHHHhhcCCcccccccCCCeEEEecCCCCCccccccccccccccceeeccccCcceee
Q 009534 286 LVEELLGLKHLNVLTITLHSFAALQRLLTYPSLQSIVSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEME 365 (532)
Q Consensus 286 ~~~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~ 365 (532)
+...+..+++|++|+++-... ..++ .....+++|++|+++++. +..+|.. +..+++|++|++++|..+..+|
T Consensus 96 lp~~l~~l~~L~~L~L~~n~l---~~lp---~~~~~l~~L~~L~Ls~n~-l~~lp~~-l~~l~~L~~L~L~~n~~~~~~p 167 (328)
T 4fcg_A 96 FPDQAFRLSHLQHMTIDAAGL---MELP---DTMQQFAGLETLTLARNP-LRALPAS-IASLNRLRELSIRACPELTELP 167 (328)
T ss_dssp CCSCGGGGTTCSEEEEESSCC---CCCC---SCGGGGTTCSEEEEESCC-CCCCCGG-GGGCTTCCEEEEEEETTCCCCC
T ss_pred cChhhhhCCCCCEEECCCCCc---cchh---HHHhccCCCCEEECCCCc-cccCcHH-HhcCcCCCEEECCCCCCccccC
Confidence 444566788999999653222 2333 233456789999999975 7788765 8899999999999998888776
Q ss_pred ecccCCccccccccCCCCCccEEEEeCCccccCCc-hhcCCCcceeeeccccccccccccccccCcCcccCccccccccc
Q 009534 366 IDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTW-LILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARL 444 (532)
Q Consensus 366 ~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~-l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L 444 (532)
..... .........+++|++|++++|+++.+|. +..+++|++|++++|. +..++. .+..+++|
T Consensus 168 ~~~~~--~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~-------------~l~~l~~L 231 (328)
T 4fcg_A 168 EPLAS--TDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGP-------------AIHHLPKL 231 (328)
T ss_dssp SCSEE--EC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC-CCCCCG-------------GGGGCTTC
T ss_pred hhHhh--ccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC-CCcCch-------------hhccCCCC
Confidence 54311 0001112358999999999998888875 8899999999998875 666766 78889999
Q ss_pred ceeeccccccccccCCCCcCCCCccEEeecCCCCCCCCCCCCCCCCCceeEEecc
Q 009534 445 ERLSLGGLENLRSIYPRALPFPHLKELHVTLCPKLKKLPFDCTSGHERKLIIKGQ 499 (532)
Q Consensus 445 ~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~l~~L~~~~~~ 499 (532)
+.|++++|.....+|.....+++|+.|++++|..+..+|...... .+|+..+..
T Consensus 232 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l-~~L~~L~L~ 285 (328)
T 4fcg_A 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRL-TQLEKLDLR 285 (328)
T ss_dssp CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGC-TTCCEEECT
T ss_pred CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcC-CCCCEEeCC
Confidence 999999999999999888999999999999999999999875544 455544433
No 4
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.44 E-value=1.3e-13 Score=114.22 Aligned_cols=75 Identities=12% Similarity=0.121 Sum_probs=69.0
Q ss_pred chhhHHHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhchHHHHHHHHHHHHHHHHHHHH
Q 009534 10 SCDGTISRCLDCIVSKAGYICHLKDNLYALRTDFQKLIEARNDVQIRVIVAEQRQ-MRRLQQVQGWLSRVQDVEKEVPRL 88 (532)
Q Consensus 10 ~~~~v~~kl~~~~~~~~~~~~~~~~~~~~L~~~l~~l~~~l~~v~~~i~~ae~~~-~~~~~~~~~Wl~~lr~~~~d~ed~ 88 (532)
+++++++|+.+++.+|+..+.+++++++.|+++|+.|+++|.+ |+.+. ...+++++.|+.+||+++||+||+
T Consensus 2 ~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~d-------a~~~~~~~~d~~vk~W~~~vrdlaYD~ED~ 74 (115)
T 3qfl_A 2 AISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIK-------IGEVPREQLDSQDKLWADEVRELSYVIEDV 74 (115)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HTTSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-------HHHhccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999999998 77763 234799999999999999999999
Q ss_pred Hhc
Q 009534 89 SRK 91 (532)
Q Consensus 89 id~ 91 (532)
+|+
T Consensus 75 iD~ 77 (115)
T 3qfl_A 75 VDK 77 (115)
T ss_dssp HHH
T ss_pred HHH
Confidence 999
No 5
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.36 E-value=2.7e-12 Score=121.69 Aligned_cols=178 Identities=13% Similarity=0.132 Sum_probs=126.2
Q ss_pred cCceeeEEeccchhHHHhhcCCcccccccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccc
Q 009534 295 HLNVLTITLHSFAALQRLLTYPSLQSIVSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVK 374 (532)
Q Consensus 295 ~L~~L~i~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~ 374 (532)
+|+.|+++-... ..++. .....+++|++|+++++..++.++...+..+++|++|++++|..++.++.....
T Consensus 32 ~l~~L~l~~n~l---~~i~~--~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~---- 102 (239)
T 2xwt_C 32 STQTLKLIETHL---RTIPS--HAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALK---- 102 (239)
T ss_dssp TCCEEEEESCCC---SEECT--TTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEE----
T ss_pred cccEEEEeCCcc---eEECH--HHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhC----
Confidence 677777553222 22222 112235679999999876688888766888889999999887788877755443
Q ss_pred cccccCCCCCccEEEEeCCccccCCchhcCCCcc---eeeeccccccccccccccccCcCcccCcccccccccc-eeecc
Q 009534 375 RIRETHGFFSLHKVSIWGSKLRHVTWLILAPNLK---LIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLE-RLSLG 450 (532)
Q Consensus 375 ~~~~~~~l~~L~~L~l~~c~L~~l~~l~~l~~L~---~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~ 450 (532)
.+++|++|++++|.++.+|.+..+++|+ .|++++++.+..++. ..+..+++|+ .|++.
T Consensus 103 ------~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~------------~~~~~l~~L~~~L~l~ 164 (239)
T 2xwt_C 103 ------ELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPV------------NAFQGLCNETLTLKLY 164 (239)
T ss_dssp ------CCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECT------------TTTTTTBSSEEEEECC
T ss_pred ------CCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCc------------ccccchhcceeEEEcC
Confidence 5888899999888888887777777777 888888756777765 2466778888 88887
Q ss_pred ccccccccCCCCcCCCCccEEeecCCCCCCCCCCCCCCCC-CceeEEecch
Q 009534 451 GLENLRSIYPRALPFPHLKELHVTLCPKLKKLPFDCTSGH-ERKLIIKGQE 500 (532)
Q Consensus 451 ~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~l-~~L~~~~~~~ 500 (532)
++ .++.+|...+..++|+.|++.+|++++.+|......+ ..|+..+...
T Consensus 165 ~n-~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~ 214 (239)
T 2xwt_C 165 NN-GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ 214 (239)
T ss_dssp SC-CCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT
T ss_pred CC-CCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC
Confidence 75 4667777665557888888888877888876544444 5666666554
No 6
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.34 E-value=6.3e-12 Score=130.96 Aligned_cols=151 Identities=19% Similarity=0.191 Sum_probs=113.8
Q ss_pred ccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCCch
Q 009534 322 VSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTWL 401 (532)
Q Consensus 322 l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~l 401 (532)
+++|++|+++++. +..++...+..+++|+.|++++|..+..++..... .+++|++|++++|+++.+|.+
T Consensus 146 l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~----------~l~~L~~L~L~~n~l~~~~~~ 214 (452)
T 3zyi_A 146 LSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE----------GLFNLKYLNLGMCNIKDMPNL 214 (452)
T ss_dssp CTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTT----------TCTTCCEEECTTSCCSSCCCC
T ss_pred cCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhcc----------CCCCCCEEECCCCcccccccc
Confidence 4667777777754 66776666777788888888877777777665443 688999999999988888888
Q ss_pred hcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccccCC-CCcCCCCccEEeecCCCCCC
Q 009534 402 ILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIYP-RALPFPHLKELHVTLCPKLK 480 (532)
Q Consensus 402 ~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~-~~~~~p~L~~L~i~~C~~L~ 480 (532)
..+++|+.|+++++. +..++. ..+..+++|+.|++.++ .+..++. ....+++|+.|+++++ +++
T Consensus 215 ~~l~~L~~L~Ls~N~-l~~~~~------------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~ 279 (452)
T 3zyi_A 215 TPLVGLEELEMSGNH-FPEIRP------------GSFHGLSSLKKLWVMNS-QVSLIERNAFDGLASLVELNLAHN-NLS 279 (452)
T ss_dssp TTCTTCCEEECTTSC-CSEECG------------GGGTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCS
T ss_pred cccccccEEECcCCc-CcccCc------------ccccCccCCCEEEeCCC-cCceECHHHhcCCCCCCEEECCCC-cCC
Confidence 899999999998765 555533 27888999999999986 4566644 5667899999999998 788
Q ss_pred CCCCCCCCCCCceeEEec
Q 009534 481 KLPFDCTSGHERKLIIKG 498 (532)
Q Consensus 481 ~lp~~~~~~l~~L~~~~~ 498 (532)
.+|......+++|+..+.
T Consensus 280 ~~~~~~~~~l~~L~~L~L 297 (452)
T 3zyi_A 280 SLPHDLFTPLRYLVELHL 297 (452)
T ss_dssp CCCTTSSTTCTTCCEEEC
T ss_pred ccChHHhccccCCCEEEc
Confidence 888654443455555443
No 7
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.32 E-value=1.2e-11 Score=128.37 Aligned_cols=181 Identities=19% Similarity=0.179 Sum_probs=126.6
Q ss_pred hhhhcCCccCceeeEEeccchhHHHhhcCCcccccccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeee
Q 009534 287 VEELLGLKHLNVLTITLHSFAALQRLLTYPSLQSIVSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEI 366 (532)
Q Consensus 287 ~~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~ 366 (532)
...+..+++|+.|+++ .+ .+..++. .....+++|++|+++++. +..++...+..+++|+.|++.+|..+..++.
T Consensus 105 ~~~~~~l~~L~~L~L~--~n-~l~~~~~--~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~ 178 (440)
T 3zyj_A 105 IGAFNGLANLNTLELF--DN-RLTTIPN--GAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISE 178 (440)
T ss_dssp GGGGTTCSSCCEEECC--SS-CCSSCCT--TTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECT
T ss_pred hhhccCCccCCEEECC--CC-cCCeeCH--hHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCc
Confidence 3455566666666643 22 1122211 112234667778777754 6677666677777888888887777777665
Q ss_pred cccCCccccccccCCCCCccEEEEeCCccccCCchhcCCCcceeeeccccccccccccccccCcCcccCcccccccccce
Q 009534 367 DYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTWLILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLER 446 (532)
Q Consensus 367 ~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~ 446 (532)
.... .+++|++|++++|+++.+|.+..+++|+.|+++++. +..++. ..+..+++|+.
T Consensus 179 ~~~~----------~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~------------~~~~~l~~L~~ 235 (440)
T 3zyj_A 179 GAFE----------GLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNH-LSAIRP------------GSFQGLMHLQK 235 (440)
T ss_dssp TTTT----------TCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSC-CCEECT------------TTTTTCTTCCE
T ss_pred chhh----------cccccCeecCCCCcCccccccCCCcccCEEECCCCc-cCccCh------------hhhccCccCCE
Confidence 5444 689999999999998999988999999999998874 666643 37888999999
Q ss_pred eeccccccccccCC-CCcCCCCccEEeecCCCCCCCCCCCCCCCCCceeEEec
Q 009534 447 LSLGGLENLRSIYP-RALPFPHLKELHVTLCPKLKKLPFDCTSGHERKLIIKG 498 (532)
Q Consensus 447 L~l~~~~~L~~i~~-~~~~~p~L~~L~i~~C~~L~~lp~~~~~~l~~L~~~~~ 498 (532)
|++.++ .+..++. .+..+++|+.|+++++ +++.+|......+..|+.++.
T Consensus 236 L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L 286 (440)
T 3zyj_A 236 LWMIQS-QIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHL 286 (440)
T ss_dssp EECTTC-CCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEEC
T ss_pred EECCCC-ceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEc
Confidence 999986 5666655 4567899999999997 788888654443455555543
No 8
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.27 E-value=4.8e-12 Score=139.08 Aligned_cols=107 Identities=18% Similarity=0.204 Sum_probs=83.7
Q ss_pred cccccHHHHHHHHHHhcc-CCceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCe-EEEEEeCCCCCHHHHHHHHHHHhc
Q 009534 148 TVVGLQSTLDRVWRCLTE-EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDF-VIWEVVSRDLQLGKIQESIAKKIG 225 (532)
Q Consensus 148 ~~vGr~~~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~-~~wv~v~~~~~~~~l~~~i~~~l~ 225 (532)
..|||++++++|.++|.. ++.++|+|+||||+||||||+.+|++. +++.+|+. ++|+++++.++...++..|+..++
T Consensus 129 ~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~-rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~ 207 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHC-HHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhh-HHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 359999999999999976 568999999999999999999999876 55688986 999999999999888888887653
Q ss_pred CCCCC----CC-----CCCHHHHHHHHHHHh---cCCcEEEe
Q 009534 226 LCNES----WD-----SKSFDEKAQEIFKTM---RNTKFLIS 255 (532)
Q Consensus 226 ~~~~~----~~-----~~~~~~~~~~l~~~L---~~kr~LlV 255 (532)
..... .. ..+.+.....+++.| .+||+|||
T Consensus 208 ~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLV 249 (1221)
T 1vt4_I 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249 (1221)
T ss_dssp HHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEE
T ss_pred hcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEE
Confidence 21100 00 112344566677765 78999999
No 9
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.22 E-value=3.4e-11 Score=117.23 Aligned_cols=166 Identities=19% Similarity=0.209 Sum_probs=116.5
Q ss_pred hhhcCCccCceeeEEeccchhHHHhhcCCcccccccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeec
Q 009534 288 EELLGLKHLNVLTITLHSFAALQRLLTYPSLQSIVSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEID 367 (532)
Q Consensus 288 ~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~ 367 (532)
+.+..+++|+.|+++ .+. +..+. ......+++|++|+++++..+..++...+..+++|++|++.++. +..++..
T Consensus 50 ~~~~~~~~L~~L~l~--~n~-l~~~~--~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~ 123 (285)
T 1ozn_A 50 ASFRACRNLTILWLH--SNV-LARID--AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPG 123 (285)
T ss_dssp TTTTTCTTCCEEECC--SSC-CCEEC--TTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTT
T ss_pred HHcccCCCCCEEECC--CCc-cceeC--HhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCc-CCEECHh
Confidence 446677788888844 321 12221 11122356688888888766777765667788888888888863 4444433
Q ss_pred ccCCccccccccCCCCCccEEEEeCCccccCCc--hhcCCCcceeeeccccccccccccccccCcCcccCcccccccccc
Q 009534 368 YAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTW--LILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLE 445 (532)
Q Consensus 368 ~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~--l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~ 445 (532)
... .+++|++|++++|.++.++. +..+++|+.|+++++. +..++. ..+..+++|+
T Consensus 124 ~~~----------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~------------~~~~~l~~L~ 180 (285)
T 1ozn_A 124 LFR----------GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPE------------RAFRGLHSLD 180 (285)
T ss_dssp TTT----------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECT------------TTTTTCTTCC
T ss_pred Hhh----------CCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc-ccccCH------------HHhcCccccC
Confidence 333 68899999999998888764 6788999999998764 666654 2577789999
Q ss_pred eeecccccccccc-CCCCcCCCCccEEeecCCCCCCCCCC
Q 009534 446 RLSLGGLENLRSI-YPRALPFPHLKELHVTLCPKLKKLPF 484 (532)
Q Consensus 446 ~L~l~~~~~L~~i-~~~~~~~p~L~~L~i~~C~~L~~lp~ 484 (532)
.|++.++. +..+ +.....+++|+.|++++| ++..+|.
T Consensus 181 ~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~ 218 (285)
T 1ozn_A 181 RLLLHQNR-VAHVHPHAFRDLGRLMTLYLFAN-NLSALPT 218 (285)
T ss_dssp EEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCSCCCH
T ss_pred EEECCCCc-ccccCHhHccCcccccEeeCCCC-cCCcCCH
Confidence 99999875 5555 556778899999999997 5666663
No 10
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.20 E-value=1.1e-10 Score=112.62 Aligned_cols=175 Identities=18% Similarity=0.182 Sum_probs=122.4
Q ss_pred ccCceeeEEeccchhHHHhhcCCcccccccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCcc
Q 009534 294 KHLNVLTITLHSFAALQRLLTYPSLQSIVSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEV 373 (532)
Q Consensus 294 ~~L~~L~i~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~ 373 (532)
++|+.|+++ .+. +..++. .....+++|++|+++++. +..++...+..+++|++|+++++ .+..++.....
T Consensus 37 ~~l~~L~l~--~n~-l~~~~~--~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~--- 106 (270)
T 2o6q_A 37 ADTKKLDLQ--SNK-LSSLPS--KAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDN-KLQALPIGVFD--- 106 (270)
T ss_dssp TTCSEEECC--SSC-CSCCCT--TSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSS-CCCCCCTTTTT---
T ss_pred CCCCEEECc--CCC-CCeeCH--HHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCC-cCCcCCHhHcc---
Confidence 457777744 321 222221 112235779999998854 77787766678889999999886 46656554433
Q ss_pred ccccccCCCCCccEEEEeCCccccCCc--hhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccc
Q 009534 374 KRIRETHGFFSLHKVSIWGSKLRHVTW--LILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGG 451 (532)
Q Consensus 374 ~~~~~~~~l~~L~~L~l~~c~L~~l~~--l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 451 (532)
.+++|++|++++|.++.++. +..+++|++|+++++. +..++. ..+..+++|+.|++.+
T Consensus 107 -------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~------------~~~~~l~~L~~L~L~~ 166 (270)
T 2o6q_A 107 -------QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPK------------GVFDKLTSLKELRLYN 166 (270)
T ss_dssp -------TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCT------------TTTTTCTTCCEEECCS
T ss_pred -------cccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCH------------hHccCCcccceeEecC
Confidence 68899999999998888765 6789999999998764 666654 2467789999999988
Q ss_pred cccccccCCC-CcCCCCccEEeecCCCCCCCCCCCCCCCCCceeEEecch
Q 009534 452 LENLRSIYPR-ALPFPHLKELHVTLCPKLKKLPFDCTSGHERKLIIKGQE 500 (532)
Q Consensus 452 ~~~L~~i~~~-~~~~p~L~~L~i~~C~~L~~lp~~~~~~l~~L~~~~~~~ 500 (532)
+ .+..++.. ...+++|+.|++++| +++.+|......+.+|+..+...
T Consensus 167 n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~ 214 (270)
T 2o6q_A 167 N-QLKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQE 214 (270)
T ss_dssp S-CCSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCS
T ss_pred C-cCcEeChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecC
Confidence 6 57777764 456899999999998 77788765433345555554433
No 11
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.20 E-value=6.6e-11 Score=114.44 Aligned_cols=126 Identities=18% Similarity=0.182 Sum_probs=58.1
Q ss_pred cCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCCc--
Q 009534 323 SNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTW-- 400 (532)
Q Consensus 323 ~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~-- 400 (532)
++|++|+++++. +..++ .+..+++|++|++++| .+..++..... .+++|++|++++|+++.++.
T Consensus 63 ~~L~~L~l~~n~-l~~~~--~l~~l~~L~~L~L~~n-~l~~~~~~~~~----------~l~~L~~L~L~~n~l~~~~~~~ 128 (272)
T 3rfs_A 63 PNVRYLALGGNK-LHDIS--ALKELTNLTYLILTGN-QLQSLPNGVFD----------KLTNLKELVLVENQLQSLPDGV 128 (272)
T ss_dssp TTCCEEECTTSC-CCCCG--GGTTCTTCCEEECTTS-CCCCCCTTTTT----------TCTTCCEEECTTSCCCCCCTTT
T ss_pred CCCcEEECCCCC-CCCch--hhcCCCCCCEEECCCC-ccCccChhHhc----------CCcCCCEEECCCCcCCccCHHH
Confidence 445555555543 33333 2445555555555554 33333332222 34555555555554444433
Q ss_pred hhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccccCCC-CcCCCCccEEeecCC
Q 009534 401 LILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIYPR-ALPFPHLKELHVTLC 476 (532)
Q Consensus 401 l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~~-~~~~p~L~~L~i~~C 476 (532)
+..+++|++|++++| .+..++. ..+..+++|+.|+++++ ++..++.. ...+++|+.|++++|
T Consensus 129 ~~~l~~L~~L~L~~n-~l~~~~~------------~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 129 FDKLTNLTYLNLAHN-QLQSLPK------------GVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp TTTCTTCCEEECCSS-CCCCCCT------------TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred hccCCCCCEEECCCC-ccCccCH------------HHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCC
Confidence 444555555555544 2333332 12344555555555554 34444332 234455555555554
No 12
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.19 E-value=7.8e-11 Score=113.92 Aligned_cols=163 Identities=17% Similarity=0.117 Sum_probs=124.2
Q ss_pred chhhhcCCccCceeeEEeccchhHHHhhcCCcccccccCCCeEEEecCCCCCccccccccccccccceeeccccCcceee
Q 009534 286 LVEELLGLKHLNVLTITLHSFAALQRLLTYPSLQSIVSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEME 365 (532)
Q Consensus 286 ~~~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~ 365 (532)
.+..+..+++|+.|+++ .+. +..++ ....+++|++|++++|. +..++...+..+++|++|+++++ .+..++
T Consensus 55 ~~~~l~~l~~L~~L~l~--~n~-l~~~~----~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~ 125 (272)
T 3rfs_A 55 SVQGIQYLPNVRYLALG--GNK-LHDIS----ALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVEN-QLQSLP 125 (272)
T ss_dssp CCTTGGGCTTCCEEECT--TSC-CCCCG----GGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTS-CCCCCC
T ss_pred cccccccCCCCcEEECC--CCC-CCCch----hhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCEEECCCC-cCCccC
Confidence 45567788999999954 332 22221 22245789999999974 78887776788999999999997 466666
Q ss_pred ecccCCccccccccCCCCCccEEEEeCCccccCCc--hhcCCCcceeeeccccccccccccccccCcCcccCcccccccc
Q 009534 366 IDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTW--LILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFAR 443 (532)
Q Consensus 366 ~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~--l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~ 443 (532)
..... .+++|++|++++|.++.++. +..+++|+.|++++|. +..++. ..+..+++
T Consensus 126 ~~~~~----------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~------------~~~~~l~~ 182 (272)
T 3rfs_A 126 DGVFD----------KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPE------------GVFDKLTQ 182 (272)
T ss_dssp TTTTT----------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCT------------TTTTTCTT
T ss_pred HHHhc----------cCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCH------------HHhcCCcc
Confidence 54433 68999999999998888775 6889999999999875 666654 24678999
Q ss_pred cceeeccccccccccCCC-CcCCCCccEEeecCCCCCCC
Q 009534 444 LERLSLGGLENLRSIYPR-ALPFPHLKELHVTLCPKLKK 481 (532)
Q Consensus 444 L~~L~l~~~~~L~~i~~~-~~~~p~L~~L~i~~C~~L~~ 481 (532)
|+.|++.++ .+..++.. ...+++|+.|++.+++-...
T Consensus 183 L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 220 (272)
T 3rfs_A 183 LKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWDCT 220 (272)
T ss_dssp CCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCEEECCCC-cCCccCHHHHhCCcCCCEEEccCCCcccc
Confidence 999999987 46777664 56799999999999864433
No 13
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.19 E-value=5.8e-11 Score=112.40 Aligned_cols=175 Identities=14% Similarity=0.115 Sum_probs=129.6
Q ss_pred hhhcCCccCceeeEEeccchhHHHhhcCCcccccccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeec
Q 009534 288 EELLGLKHLNVLTITLHSFAALQRLLTYPSLQSIVSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEID 367 (532)
Q Consensus 288 ~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~ 367 (532)
..+..+++|+.|+++ .+..+..++.. ....+++|++|++++|+.++.++...+..+++|+.|+++++ .++.+|.
T Consensus 49 ~~~~~l~~L~~L~l~--~n~~l~~i~~~--~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n-~l~~lp~- 122 (239)
T 2xwt_C 49 HAFSNLPNISRIYVS--IDVTLQQLESH--SFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT-GLKMFPD- 122 (239)
T ss_dssp TTTTTCTTCCEEEEE--CCSSCCEECTT--TEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEE-CCCSCCC-
T ss_pred HHccCCCCCcEEeCC--CCCCcceeCHh--HcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCC-CCccccc-
Confidence 356778999999965 33223333321 12235789999999988899998777889999999999997 4665654
Q ss_pred ccCCccccccccCCCCCcc---EEEEeCC-ccccCCc--hhcCCCcc-eeeeccccccccccccccccCcCcccCccccc
Q 009534 368 YAGGEVKRIRETHGFFSLH---KVSIWGS-KLRHVTW--LILAPNLK-LIQMYDCRCLEEIISLEKLGEVPSEEMQNLIP 440 (532)
Q Consensus 368 ~~~~~~~~~~~~~~l~~L~---~L~l~~c-~L~~l~~--l~~l~~L~-~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~ 440 (532)
.. .+++|+ +|++++| .++.++. +..+++|+ .|+++++. +..++. ....
T Consensus 123 ~~-----------~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~-------------~~~~ 177 (239)
T 2xwt_C 123 LT-----------KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQG-------------YAFN 177 (239)
T ss_dssp CT-----------TCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECT-------------TTTT
T ss_pred cc-----------cccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCH-------------hhcC
Confidence 22 466666 9999999 9999775 78899999 99998764 667765 3333
Q ss_pred ccccceeeccccccccccCCC-CcCC-CCccEEeecCCCCCCCCCCCCCCCCCcee
Q 009534 441 FARLERLSLGGLENLRSIYPR-ALPF-PHLKELHVTLCPKLKKLPFDCTSGHERKL 494 (532)
Q Consensus 441 ~~~L~~L~l~~~~~L~~i~~~-~~~~-p~L~~L~i~~C~~L~~lp~~~~~~l~~L~ 494 (532)
.++|+.|++.++++++.++.. ...+ ++|+.|+++++ +++.+|......++.|.
T Consensus 178 ~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~~~~~L~~L~ 232 (239)
T 2xwt_C 178 GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSKGLEHLKELI 232 (239)
T ss_dssp TCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCTTCTTCSEEE
T ss_pred CCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChhHhccCceee
Confidence 389999999998889898764 4567 89999999994 67888876332234443
No 14
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.18 E-value=7.9e-11 Score=108.02 Aligned_cols=131 Identities=14% Similarity=0.268 Sum_probs=76.3
Q ss_pred ccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCcccc--CC
Q 009534 322 VSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRH--VT 399 (532)
Q Consensus 322 l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~--l~ 399 (532)
+++|+.|+++++. +..+| .+..+++|++|++++| .++.++ . ...+++|++|++++|.+.. .+
T Consensus 43 l~~L~~L~l~~n~-i~~l~--~l~~l~~L~~L~l~~n-~~~~~~--~----------l~~l~~L~~L~l~~n~l~~~~~~ 106 (197)
T 4ezg_A 43 MNSLTYITLANIN-VTDLT--GIEYAHNIKDLTINNI-HATNYN--P----------ISGLSNLERLRIMGKDVTSDKIP 106 (197)
T ss_dssp HHTCCEEEEESSC-CSCCT--TGGGCTTCSEEEEESC-CCSCCG--G----------GTTCTTCCEEEEECTTCBGGGSC
T ss_pred cCCccEEeccCCC-ccChH--HHhcCCCCCEEEccCC-CCCcch--h----------hhcCCCCCEEEeECCccCcccCh
Confidence 4556677776643 55555 2666667777777666 344332 1 1246677777777765554 44
Q ss_pred chhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccccCCCCcCCCCccEEeecCCCCC
Q 009534 400 WLILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIYPRALPFPHLKELHVTLCPKL 479 (532)
Q Consensus 400 ~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L 479 (532)
.+..+++|++|++++|.-....+. .+..+++|++|++++|..++.++ ....+++|+.|++++|. +
T Consensus 107 ~l~~l~~L~~L~Ls~n~i~~~~~~-------------~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i 171 (197)
T 4ezg_A 107 NLSGLTSLTLLDISHSAHDDSILT-------------KINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-V 171 (197)
T ss_dssp CCTTCTTCCEEECCSSBCBGGGHH-------------HHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-C
T ss_pred hhcCCCCCCEEEecCCccCcHhHH-------------HHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-C
Confidence 466667777777766542222222 45566677777777665566665 35566677777776663 4
Q ss_pred CCCC
Q 009534 480 KKLP 483 (532)
Q Consensus 480 ~~lp 483 (532)
..+|
T Consensus 172 ~~~~ 175 (197)
T 4ezg_A 172 HDYR 175 (197)
T ss_dssp CCCT
T ss_pred cChH
Confidence 4444
No 15
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.13 E-value=3.3e-10 Score=108.06 Aligned_cols=149 Identities=19% Similarity=0.213 Sum_probs=101.5
Q ss_pred CCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCCc--h
Q 009534 324 NTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTW--L 401 (532)
Q Consensus 324 ~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~--l 401 (532)
+++.|+++++. +..++...+..+++|++|+++++ .+..++..... .+++|++|++++|+++.++. +
T Consensus 36 ~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~----------~l~~L~~L~L~~n~l~~~~~~~~ 103 (251)
T 3m19_A 36 DTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFD----------DLTELGTLGLANNQLASLPLGVF 103 (251)
T ss_dssp TCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTT----------TCTTCCEEECTTSCCCCCCTTTT
T ss_pred CCCEEEccCCC-cCccCHhHhcCcccCCEEECCCC-cCCccCHhHhc----------cCCcCCEEECCCCcccccChhHh
Confidence 48888888754 66666656777888888888875 45555444333 57888888888887777663 5
Q ss_pred hcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccccCC-CCcCCCCccEEeecCCCCCC
Q 009534 402 ILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIYP-RALPFPHLKELHVTLCPKLK 480 (532)
Q Consensus 402 ~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~-~~~~~p~L~~L~i~~C~~L~ 480 (532)
..+++|++|+++++ .+..++. ..+..+++|+.|+++++ +++.++. ....+++|+.|+++++ +++
T Consensus 104 ~~l~~L~~L~L~~N-~l~~~~~------------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~ 168 (251)
T 3m19_A 104 DHLTQLDKLYLGGN-QLKSLPS------------GVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTN-QLQ 168 (251)
T ss_dssp TTCTTCCEEECCSS-CCCCCCT------------TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCS
T ss_pred cccCCCCEEEcCCC-cCCCcCh------------hHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCC-cCC
Confidence 67888888888765 4666654 24566788888888876 5777766 3556788888888886 566
Q ss_pred CCCCCCCCCCCceeEEecc
Q 009534 481 KLPFDCTSGHERKLIIKGQ 499 (532)
Q Consensus 481 ~lp~~~~~~l~~L~~~~~~ 499 (532)
.+|......+.+|+.++..
T Consensus 169 ~~~~~~~~~l~~L~~L~l~ 187 (251)
T 3m19_A 169 SVPHGAFDRLGKLQTITLF 187 (251)
T ss_dssp CCCTTTTTTCTTCCEEECC
T ss_pred ccCHHHHhCCCCCCEEEee
Confidence 6665333333555555433
No 16
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.12 E-value=2.6e-10 Score=110.06 Aligned_cols=159 Identities=19% Similarity=0.230 Sum_probs=121.9
Q ss_pred hhhcCCccCceeeEEeccchhHHHhhcCCcccccccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeec
Q 009534 288 EELLGLKHLNVLTITLHSFAALQRLLTYPSLQSIVSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEID 367 (532)
Q Consensus 288 ~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~ 367 (532)
..+..+++|+.|+++ .+. +..++.. ....+++|++|+++++. +..++...+..+++|+.|+++++ .+..++..
T Consensus 55 ~~~~~l~~L~~L~l~--~n~-l~~i~~~--~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~ 127 (270)
T 2o6q_A 55 KAFHRLTKLRLLYLN--DNK-LQTLPAG--IFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRN-QLKSLPPR 127 (270)
T ss_dssp TSSSSCTTCCEEECC--SSC-CSCCCTT--TTSSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEEECCSS-CCCCCCTT
T ss_pred HHhcCCCCCCEEECC--CCc-cCeeChh--hhcCCCCCCEEECCCCc-CCcCCHhHcccccCCCEEECCCC-ccCeeCHH
Confidence 456788999999954 331 2222221 12235779999999965 88888776788999999999986 56666654
Q ss_pred ccCCccccccccCCCCCccEEEEeCCccccCCc--hhcCCCcceeeeccccccccccccccccCcCcccCcccccccccc
Q 009534 368 YAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTW--LILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLE 445 (532)
Q Consensus 368 ~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~--l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~ 445 (532)
... .+++|++|++++|.++.++. +..+++|+.|+++++. +..++. ..+..+++|+
T Consensus 128 ~~~----------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~------------~~~~~l~~L~ 184 (270)
T 2o6q_A 128 VFD----------SLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPE------------GAFDKLTELK 184 (270)
T ss_dssp TTT----------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCT------------TTTTTCTTCC
T ss_pred HhC----------cCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc-CcEeCh------------hHhccCCCcC
Confidence 433 68999999999999888775 7889999999998874 666654 2577789999
Q ss_pred eeeccccccccccCCC-CcCCCCccEEeecCCC
Q 009534 446 RLSLGGLENLRSIYPR-ALPFPHLKELHVTLCP 477 (532)
Q Consensus 446 ~L~l~~~~~L~~i~~~-~~~~p~L~~L~i~~C~ 477 (532)
+|+++++ .++.++.. ...+++|+.|++.++|
T Consensus 185 ~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 185 TLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp EEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence 9999987 67888774 4568999999999875
No 17
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.11 E-value=2.1e-10 Score=105.18 Aligned_cols=150 Identities=18% Similarity=0.191 Sum_probs=111.0
Q ss_pred cCCccCceeeEEeccchhHHHhhcCCcccccccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccC
Q 009534 291 LGLKHLNVLTITLHSFAALQRLLTYPSLQSIVSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAG 370 (532)
Q Consensus 291 ~~L~~L~~L~i~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~ 370 (532)
..+++|+.|+++-.... .++ ....+++|++|++++| .+..++. +..+++|++|+++++. +.......
T Consensus 41 ~~l~~L~~L~l~~n~i~---~l~----~l~~l~~L~~L~l~~n-~~~~~~~--l~~l~~L~~L~l~~n~-l~~~~~~~-- 107 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT---DLT----GIEYAHNIKDLTINNI-HATNYNP--ISGLSNLERLRIMGKD-VTSDKIPN-- 107 (197)
T ss_dssp HHHHTCCEEEEESSCCS---CCT----TGGGCTTCSEEEEESC-CCSCCGG--GTTCTTCCEEEEECTT-CBGGGSCC--
T ss_pred hhcCCccEEeccCCCcc---ChH----HHhcCCCCCEEEccCC-CCCcchh--hhcCCCCCEEEeECCc-cCcccChh--
Confidence 34567888886532222 222 1234578999999998 5777653 7889999999999974 44321222
Q ss_pred CccccccccCCCCCccEEEEeCCcccc--CCchhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceee
Q 009534 371 GEVKRIRETHGFFSLHKVSIWGSKLRH--VTWLILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLS 448 (532)
Q Consensus 371 ~~~~~~~~~~~l~~L~~L~l~~c~L~~--l~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~ 448 (532)
...+++|++|++++|.++. .+.+..+++|++|++++|..+..++ .+..+++|+.|+
T Consensus 108 --------l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--------------~l~~l~~L~~L~ 165 (197)
T 4ezg_A 108 --------LSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--------------PLKTLPELKSLN 165 (197)
T ss_dssp --------CTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--------------GGGGCSSCCEEE
T ss_pred --------hcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--------------hhcCCCCCCEEE
Confidence 2368999999999998876 4458899999999999987666663 467789999999
Q ss_pred ccccccccccCCCCcCCCCccEEeecCCC
Q 009534 449 LGGLENLRSIYPRALPFPHLKELHVTLCP 477 (532)
Q Consensus 449 l~~~~~L~~i~~~~~~~p~L~~L~i~~C~ 477 (532)
+++| .+..++ ....+|+|+.|++++.+
T Consensus 166 l~~n-~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 166 IQFD-GVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CTTB-CCCCCT-TGGGCSSCCEEEECBC-
T ss_pred CCCC-CCcChH-HhccCCCCCEEEeeCcc
Confidence 9987 467776 56789999999998864
No 18
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.10 E-value=1.8e-10 Score=134.72 Aligned_cols=110 Identities=17% Similarity=0.224 Sum_probs=85.5
Q ss_pred CCcccccHHHHHHHHHHhcc--CCceEEEEecCCCCcHHHHHHHHHHhccCCCCCC-CeEEEEEeCCCCC--HHHHHHHH
Q 009534 146 PPTVVGLQSTLDRVWRCLTE--EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNF-DFVIWEVVSRDLQ--LGKIQESI 220 (532)
Q Consensus 146 ~~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F-~~~~wv~v~~~~~--~~~l~~~i 220 (532)
.+.||||++++++|.++|.. ++.++|+|+||||+||||||+++|++......+| +.++||++++..+ ....+..+
T Consensus 123 ~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 202 (1249)
T 3sfz_A 123 PVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNL 202 (1249)
T ss_dssp CSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHH
T ss_pred CceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHH
Confidence 35699999999999999953 5789999999999999999999999851113445 6788999988543 44456677
Q ss_pred HHHhcCCCC--CCCCCCHHHHHHHHHHHhcCC--cEEEe
Q 009534 221 AKKIGLCNE--SWDSKSFDEKAQEIFKTMRNT--KFLIS 255 (532)
Q Consensus 221 ~~~l~~~~~--~~~~~~~~~~~~~l~~~L~~k--r~LlV 255 (532)
+..+..... .....+.+.....++..+.++ |||||
T Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~Llv 241 (1249)
T 3sfz_A 203 CMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLI 241 (1249)
T ss_dssp HHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEE
T ss_pred HHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEE
Confidence 777765431 113457788899999999887 99999
No 19
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.09 E-value=3.7e-10 Score=117.08 Aligned_cols=181 Identities=20% Similarity=0.261 Sum_probs=114.3
Q ss_pred chhhhcCCccCceeeEEeccchhHHHhhcCCcccccccCCCeEEEecCCCCCccccccccccccccceeeccccCcceee
Q 009534 286 LVEELLGLKHLNVLTITLHSFAALQRLLTYPSLQSIVSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEME 365 (532)
Q Consensus 286 ~~~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~ 365 (532)
....+..+++|+.|+++ .+. +..+.. .....+++|++|+++++ .++.++...+..+++|+.|+++++ .+..++
T Consensus 80 ~~~~~~~l~~L~~L~Ls--~n~-i~~i~~--~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~ 152 (440)
T 3zyj_A 80 KVNSFKHLRHLEILQLS--RNH-IRTIEI--GAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNN-PIESIP 152 (440)
T ss_dssp CTTTTSSCSSCCEEECC--SSC-CCEECG--GGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEECCSC-CCCEEC
T ss_pred CHHHhhCCCCCCEEECC--CCc-CCccCh--hhccCCccCCEEECCCC-cCCeeCHhHhhccccCceeeCCCC-cccccC
Confidence 44556677777777744 221 111110 11222466788888775 477776666777778888888775 455555
Q ss_pred ecccCCccccccccCCCCCccEEEEeCC-ccccCCc--hhcCCCcceeeeccccccccccccccccCcCcccCccccccc
Q 009534 366 IDYAGGEVKRIRETHGFFSLHKVSIWGS-KLRHVTW--LILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFA 442 (532)
Q Consensus 366 ~~~~~~~~~~~~~~~~l~~L~~L~l~~c-~L~~l~~--l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~ 442 (532)
..... .+++|++|++.+| .+..++. +..+++|+.|++++|. +..++ .+..++
T Consensus 153 ~~~~~----------~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~--------------~~~~l~ 207 (440)
T 3zyj_A 153 SYAFN----------RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIP--------------NLTPLI 207 (440)
T ss_dssp TTTTT----------TCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCC--------------CCTTCS
T ss_pred HHHhh----------hCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Ccccc--------------ccCCCc
Confidence 54433 5778888888887 6666553 6677888888887763 55543 356678
Q ss_pred ccceeecccccccccc-CCCCcCCCCccEEeecCCCCCCCCCCCCCCCCCceeEEecch
Q 009534 443 RLERLSLGGLENLRSI-YPRALPFPHLKELHVTLCPKLKKLPFDCTSGHERKLIIKGQE 500 (532)
Q Consensus 443 ~L~~L~l~~~~~L~~i-~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~l~~L~~~~~~~ 500 (532)
+|+.|+++++ .+..+ +..+..+++|+.|++.++ +++.++......+++|+..+...
T Consensus 208 ~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~ 264 (440)
T 3zyj_A 208 KLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAH 264 (440)
T ss_dssp SCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTC-CCCEECTTSSTTCTTCCEEECTT
T ss_pred ccCEEECCCC-ccCccChhhhccCccCCEEECCCC-ceeEEChhhhcCCCCCCEEECCC
Confidence 8888888886 56666 345667888899988886 45555443322346666665544
No 20
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.09 E-value=4.2e-10 Score=110.83 Aligned_cols=150 Identities=18% Similarity=0.296 Sum_probs=84.7
Q ss_pred hhhhcCCccCceeeEEeccchhHHHhhcCCcccccccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeee
Q 009534 287 VEELLGLKHLNVLTITLHSFAALQRLLTYPSLQSIVSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEI 366 (532)
Q Consensus 287 ~~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~ 366 (532)
+..+..+++|+.|+++ .+ .+..++. ...+++|++|+++++. +..++. +..+++|+.|++++| .+..++.
T Consensus 56 l~~~~~l~~L~~L~L~--~n-~i~~~~~----~~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~l~~n-~l~~~~~ 124 (308)
T 1h6u_A 56 IEGVQYLNNLIGLELK--DN-QITDLAP----LKNLTKITELELSGNP-LKNVSA--IAGLQSIKTLDLTST-QITDVTP 124 (308)
T ss_dssp CTTGGGCTTCCEEECC--SS-CCCCCGG----GTTCCSCCEEECCSCC-CSCCGG--GTTCTTCCEEECTTS-CCCCCGG
T ss_pred chhhhccCCCCEEEcc--CC-cCCCChh----HccCCCCCEEEccCCc-CCCchh--hcCCCCCCEEECCCC-CCCCchh
Confidence 3456667777777743 22 1122221 2234667777777764 666552 667777777777776 3444332
Q ss_pred cccCCccccccccCCCCCccEEEEeCCccccCCchhcCCCcceeeeccccccccccccccccCcCcccCcccccccccce
Q 009534 367 DYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTWLILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLER 446 (532)
Q Consensus 367 ~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~ 446 (532)
...+++|++|++++|.++.++.+..+++|+.|++++|. +..++. +..+++|+.
T Consensus 125 ------------l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~-l~~~~~--------------l~~l~~L~~ 177 (308)
T 1h6u_A 125 ------------LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQ-VSDLTP--------------LANLSKLTT 177 (308)
T ss_dssp ------------GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSC-CCCCGG--------------GTTCTTCCE
T ss_pred ------------hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCc-CCCChh--------------hcCCCCCCE
Confidence 12467777777777766666666667777777776653 333321 344555555
Q ss_pred eeccccccccccCCCCcCCCCccEEeecCC
Q 009534 447 LSLGGLENLRSIYPRALPFPHLKELHVTLC 476 (532)
Q Consensus 447 L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C 476 (532)
|+++++ .+..++. ...+++|+.|++++|
T Consensus 178 L~l~~n-~l~~~~~-l~~l~~L~~L~L~~N 205 (308)
T 1h6u_A 178 LKADDN-KISDISP-LASLPNLIEVHLKNN 205 (308)
T ss_dssp EECCSS-CCCCCGG-GGGCTTCCEEECTTS
T ss_pred EECCCC-ccCcChh-hcCCCCCCEEEccCC
Confidence 555554 3344432 344555555555554
No 21
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.09 E-value=4.4e-10 Score=117.68 Aligned_cols=177 Identities=20% Similarity=0.247 Sum_probs=99.8
Q ss_pred hhhhcCCccCceeeEEeccchhHHHhhcCCcccccccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeee
Q 009534 287 VEELLGLKHLNVLTITLHSFAALQRLLTYPSLQSIVSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEI 366 (532)
Q Consensus 287 ~~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~ 366 (532)
...+..+++|+.|+++ .+. +..+. +.....+++|++|+++++. +..+|...+..+++|++|+++++. +..++.
T Consensus 49 ~~~~~~l~~L~~L~L~--~n~-i~~~~--~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~ 121 (477)
T 2id5_A 49 QDEFASFPHLEELELN--ENI-VSAVE--PGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISENK-IVILLD 121 (477)
T ss_dssp TTTTTTCTTCCEEECT--TSC-CCEEC--TTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEECTTSC-CCEECT
T ss_pred HhHccCCCCCCEEECC--CCc-cCEeC--hhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEEECCCCc-cccCCh
Confidence 3455666777777643 221 11110 1111224557777776643 566665555666666666666542 222222
Q ss_pred cccC--------------CccccccccCCCCCccEEEEeCCccccCCc--hhcCCCcceeeeccccccccccccccccCc
Q 009534 367 DYAG--------------GEVKRIRETHGFFSLHKVSIWGSKLRHVTW--LILAPNLKLIQMYDCRCLEEIISLEKLGEV 430 (532)
Q Consensus 367 ~~~~--------------~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~--l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~ 430 (532)
.... .....+.....+++|++|++++|+++.++. +..+++|+.|++.++. +..++.
T Consensus 122 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-i~~~~~------- 193 (477)
T 2id5_A 122 YMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN-INAIRD------- 193 (477)
T ss_dssp TTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCC-CCEECT-------
T ss_pred hHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCc-CcEeCh-------
Confidence 1111 000111122345666666666666666553 5566666666666543 333332
Q ss_pred CcccCcccccccccceeeccccccccccCCCCcCCCCccEEeecCCCCCCCCCC
Q 009534 431 PSEEMQNLIPFARLERLSLGGLENLRSIYPRALPFPHLKELHVTLCPKLKKLPF 484 (532)
Q Consensus 431 ~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~ 484 (532)
..+..+++|+.|++.+++.+..++......++|+.|++++| +++.+|.
T Consensus 194 -----~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~ 241 (477)
T 2id5_A 194 -----YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPY 241 (477)
T ss_dssp -----TCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS-CCCSCCH
T ss_pred -----hhcccCcccceeeCCCCccccccCcccccCccccEEECcCC-cccccCH
Confidence 25667788888888888888888777777778888888887 5667773
No 22
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.06 E-value=8.1e-10 Score=115.64 Aligned_cols=148 Identities=17% Similarity=0.148 Sum_probs=103.7
Q ss_pred ccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCCc-
Q 009534 322 VSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTW- 400 (532)
Q Consensus 322 l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~- 400 (532)
+++|+.|+++++. +..++...+..+++|+.|++++|..+..++..... ..+|++|++++|+++.+|.
T Consensus 175 l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-----------~~~L~~L~l~~n~l~~~~~~ 242 (477)
T 2id5_A 175 LHGLIVLRLRHLN-INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY-----------GLNLTSLSITHCNLTAVPYL 242 (477)
T ss_dssp CTTCCEEEEESCC-CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT-----------TCCCSEEEEESSCCCSCCHH
T ss_pred cCCCcEEeCCCCc-CcEeChhhcccCcccceeeCCCCccccccCccccc-----------CccccEEECcCCcccccCHH
Confidence 3556667766643 55555555666777777777777666666554433 4589999999998888884
Q ss_pred -hhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeecccccccccc-CCCCcCCCCccEEeecCCCC
Q 009534 401 -LILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSI-YPRALPFPHLKELHVTLCPK 478 (532)
Q Consensus 401 -l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i-~~~~~~~p~L~~L~i~~C~~ 478 (532)
+..+++|+.|+++++. +..++. ..+..+++|+.|++.++ ++..+ +.....+++|+.|++++| +
T Consensus 243 ~~~~l~~L~~L~Ls~n~-l~~~~~------------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~ 307 (477)
T 2id5_A 243 AVRHLVYLRFLNLSYNP-ISTIEG------------SMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGN-Q 307 (477)
T ss_dssp HHTTCTTCCEEECCSSC-CCEECT------------TSCTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEECCSS-C
T ss_pred HhcCccccCeeECCCCc-CCccCh------------hhccccccCCEEECCCC-ccceECHHHhcCcccCCEEECCCC-c
Confidence 7889999999998775 555544 36778899999999986 45555 445667899999999997 6
Q ss_pred CCCCCCCCCCCCCceeEE
Q 009534 479 LKKLPFDCTSGHERKLII 496 (532)
Q Consensus 479 L~~lp~~~~~~l~~L~~~ 496 (532)
++.+|......+.+|+.+
T Consensus 308 l~~~~~~~~~~l~~L~~L 325 (477)
T 2id5_A 308 LTTLEESVFHSVGNLETL 325 (477)
T ss_dssp CSCCCGGGBSCGGGCCEE
T ss_pred CceeCHhHcCCCcccCEE
Confidence 777776432222444443
No 23
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.06 E-value=4.9e-10 Score=109.34 Aligned_cols=144 Identities=19% Similarity=0.190 Sum_probs=103.2
Q ss_pred ccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCCc-
Q 009534 322 VSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTW- 400 (532)
Q Consensus 322 l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~- 400 (532)
+++|+.|+++++. +..++. ...+++|+.|+++++ .+..+|.... .+++|++|++++|+++.++.
T Consensus 54 l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~Ls~N-~l~~l~~~~~-----------~l~~L~~L~l~~N~l~~l~~~ 118 (290)
T 1p9a_G 54 YTRLTQLNLDRAE-LTKLQV--DGTLPVLGTLDLSHN-QLQSLPLLGQ-----------TLPALTVLDVSFNRLTSLPLG 118 (290)
T ss_dssp CTTCCEEECTTSC-CCEEEC--CSCCTTCCEEECCSS-CCSSCCCCTT-----------TCTTCCEEECCSSCCCCCCSS
T ss_pred CCCCCEEECCCCc-cCcccC--CCCCCcCCEEECCCC-cCCcCchhhc-----------cCCCCCEEECCCCcCcccCHH
Confidence 5668888888854 777765 367788888888876 5565655332 48888888888888888764
Q ss_pred -hhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccccCCCC-cCCCCccEEeecCCCC
Q 009534 401 -LILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIYPRA-LPFPHLKELHVTLCPK 478 (532)
Q Consensus 401 -l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~~~-~~~p~L~~L~i~~C~~ 478 (532)
+..+++|+.|+++++. +..++. ..+..+++|+.|+++++ +++.+|... ..+++|+.|+++++ +
T Consensus 119 ~~~~l~~L~~L~L~~N~-l~~~~~------------~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N-~ 183 (290)
T 1p9a_G 119 ALRGLGELQELYLKGNE-LKTLPP------------GLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQEN-S 183 (290)
T ss_dssp TTTTCTTCCEEECTTSC-CCCCCT------------TTTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSS-C
T ss_pred HHcCCCCCCEEECCCCC-CCccCh------------hhcccccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCC-c
Confidence 6778888888887764 566654 24567888888888875 577787754 45888888888876 5
Q ss_pred CCCCCCCCCCCCCceeEE
Q 009534 479 LKKLPFDCTSGHERKLII 496 (532)
Q Consensus 479 L~~lp~~~~~~l~~L~~~ 496 (532)
++.+|.+.... ..|+.+
T Consensus 184 l~~ip~~~~~~-~~L~~l 200 (290)
T 1p9a_G 184 LYTIPKGFFGS-HLLPFA 200 (290)
T ss_dssp CCCCCTTTTTT-CCCSEE
T ss_pred CCccChhhccc-ccCCeE
Confidence 77888765544 344443
No 24
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.06 E-value=6.2e-10 Score=99.09 Aligned_cols=134 Identities=19% Similarity=0.194 Sum_probs=105.2
Q ss_pred cCCCeEEEecCCCCC--ccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCcccc-CC
Q 009534 323 SNTPSLSLTNCRSLS--SLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRH-VT 399 (532)
Q Consensus 323 ~~L~~L~l~~c~~l~--~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~-l~ 399 (532)
++|+.|++++|. +. .+|.. +..+++|+.|++.+|. +..+ ... ..+++|++|++++|.+.. +|
T Consensus 24 ~~L~~L~l~~n~-l~~~~i~~~-~~~l~~L~~L~l~~n~-l~~~--~~~----------~~l~~L~~L~Ls~N~l~~~~~ 88 (168)
T 2ell_A 24 AAVRELVLDNCK-SNDGKIEGL-TAEFVNLEFLSLINVG-LISV--SNL----------PKLPKLKKLELSENRIFGGLD 88 (168)
T ss_dssp TSCSEEECCSCB-CBTTBCSSC-CGGGGGCCEEEEESSC-CCCC--SSC----------CCCSSCCEEEEESCCCCSCCC
T ss_pred ccCCEEECCCCC-CChhhHHHH-HHhCCCCCEEeCcCCC-CCCh--hhh----------ccCCCCCEEECcCCcCchHHH
Confidence 559999999976 65 77754 7889999999999985 6655 222 368999999999998887 66
Q ss_pred c-hhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccccCC----CCcCCCCccEEeec
Q 009534 400 W-LILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIYP----RALPFPHLKELHVT 474 (532)
Q Consensus 400 ~-l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~----~~~~~p~L~~L~i~ 474 (532)
. +..+++|+.|++++| .+..++. ...+..+++|+.|+++++ .+..++. ....+|+|+.|++.
T Consensus 89 ~~~~~l~~L~~L~Ls~N-~l~~~~~-----------~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 155 (168)
T 2ell_A 89 MLAEKLPNLTHLNLSGN-KLKDIST-----------LEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGY 155 (168)
T ss_dssp HHHHHCTTCCEEECBSS-SCCSSGG-----------GGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTE
T ss_pred HHHhhCCCCCEEeccCC-ccCcchh-----------HHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCC
Confidence 6 445999999999887 4666642 126778999999999997 4667765 56679999999999
Q ss_pred CCCCCCCCCCC
Q 009534 475 LCPKLKKLPFD 485 (532)
Q Consensus 475 ~C~~L~~lp~~ 485 (532)
+|+ +.++|..
T Consensus 156 ~n~-~~~~~~~ 165 (168)
T 2ell_A 156 DRE-DQEAPDS 165 (168)
T ss_dssp ETT-SCBCCSS
T ss_pred CCC-hhhcccc
Confidence 984 5666654
No 25
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.06 E-value=2.7e-10 Score=122.77 Aligned_cols=107 Identities=16% Similarity=0.223 Sum_probs=80.2
Q ss_pred CcccccHHHHHHHHHHhcc--CCceEEEEecCCCCcHHHHHHHHHHhccCC-CCCC-CeEEEEEeCCCCCHHHHHHHH--
Q 009534 147 PTVVGLQSTLDRVWRCLTE--EPVGIVGLYGMGGVGKTTLLTQINNSFLHT-PNNF-DFVIWEVVSRDLQLGKIQESI-- 220 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~~F-~~~~wv~v~~~~~~~~l~~~i-- 220 (532)
+.||||+.+++.+.++|.. ++.++++|+||||+||||||+.+|++. .+ ..+| +.++|++++.. +...+...+
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~-~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~ 201 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDH-SLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQN 201 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCH-HHHHHHCTTCEEEEEEESC-CHHHHHHHHHH
T ss_pred CeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhch-hHHHhhCCCceEEEECCCC-chHHHHHHHHH
Confidence 5799999999999999974 468999999999999999999999875 33 4678 58999999775 333444443
Q ss_pred -HHHhcCCC--CCCCCCCHHHHHHHHHHHhcC--CcEEEe
Q 009534 221 -AKKIGLCN--ESWDSKSFDEKAQEIFKTMRN--TKFLIS 255 (532)
Q Consensus 221 -~~~l~~~~--~~~~~~~~~~~~~~l~~~L~~--kr~LlV 255 (532)
...++... ......+.+.....+++.+.+ +++|||
T Consensus 202 l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLV 241 (591)
T 1z6t_A 202 LCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLI 241 (591)
T ss_dssp HHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEE
T ss_pred HHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEE
Confidence 34444211 112445677788888888876 688888
No 26
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.05 E-value=7.1e-10 Score=115.36 Aligned_cols=181 Identities=19% Similarity=0.209 Sum_probs=115.1
Q ss_pred chhhhcCCccCceeeEEeccchhHHHhhcCCcccccccCCCeEEEecCCCCCccccccccccccccceeeccccCcceee
Q 009534 286 LVEELLGLKHLNVLTITLHSFAALQRLLTYPSLQSIVSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEME 365 (532)
Q Consensus 286 ~~~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~ 365 (532)
..+.+..+++|+.|+++ .+ .+..+.. .....+++|++|+|+++. +..++...+..+++|++|+++++ .++.++
T Consensus 91 ~~~~~~~l~~L~~L~Ls--~n-~i~~~~~--~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~ 163 (452)
T 3zyi_A 91 QADTFRHLHHLEVLQLG--RN-SIRQIEV--GAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNN-PIESIP 163 (452)
T ss_dssp CTTTTTTCTTCCEEECC--SS-CCCEECT--TTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEECCSC-CCCEEC
T ss_pred CHHHcCCCCCCCEEECC--CC-ccCCcCh--hhccCcccCCEEECCCCc-CCccChhhhcccCCCCEEECCCC-CcceeC
Confidence 34556677777777744 22 1111111 112234668888888754 77777666777788888888776 456565
Q ss_pred ecccCCccccccccCCCCCccEEEEeCC-ccccCCc--hhcCCCcceeeeccccccccccccccccCcCcccCccccccc
Q 009534 366 IDYAGGEVKRIRETHGFFSLHKVSIWGS-KLRHVTW--LILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFA 442 (532)
Q Consensus 366 ~~~~~~~~~~~~~~~~l~~L~~L~l~~c-~L~~l~~--l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~ 442 (532)
..... .+++|++|++++| .+..++. +..+++|+.|++++|. +..++ .+..++
T Consensus 164 ~~~~~----------~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~--------------~~~~l~ 218 (452)
T 3zyi_A 164 SYAFN----------RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMP--------------NLTPLV 218 (452)
T ss_dssp TTTTT----------TCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCC--------------CCTTCT
T ss_pred HhHHh----------cCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-ccccc--------------cccccc
Confidence 54433 5788888888887 7777654 6678888888887664 44442 466688
Q ss_pred ccceeecccccccccc-CCCCcCCCCccEEeecCCCCCCCCCCCCCCCCCceeEEecch
Q 009534 443 RLERLSLGGLENLRSI-YPRALPFPHLKELHVTLCPKLKKLPFDCTSGHERKLIIKGQE 500 (532)
Q Consensus 443 ~L~~L~l~~~~~L~~i-~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~l~~L~~~~~~~ 500 (532)
+|+.|+++++. +..+ +..+..+++|+.|++.+|. +..++......+.+|+..+...
T Consensus 219 ~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~ 275 (452)
T 3zyi_A 219 GLEELEMSGNH-FPEIRPGSFHGLSSLKKLWVMNSQ-VSLIERNAFDGLASLVELNLAH 275 (452)
T ss_dssp TCCEEECTTSC-CSEECGGGGTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCS
T ss_pred cccEEECcCCc-CcccCcccccCccCCCEEEeCCCc-CceECHHHhcCCCCCCEEECCC
Confidence 89999998864 5555 4456678899999998874 4444332222235555555443
No 27
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.05 E-value=7.3e-10 Score=107.17 Aligned_cols=149 Identities=19% Similarity=0.199 Sum_probs=91.2
Q ss_pred ccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCcccc--CC
Q 009534 322 VSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRH--VT 399 (532)
Q Consensus 322 l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~--l~ 399 (532)
+++|++|+++++. +..++...+..+++|+.|++.++ .+..++... ...+++|++|++++|.+.. +|
T Consensus 75 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~----------~~~l~~L~~L~l~~n~l~~~~l~ 142 (276)
T 2z62_A 75 LSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVET-NLASLENFP----------IGHLKTLKELNVAHNLIQSFKLP 142 (276)
T ss_dssp CTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTS-CCCCSTTCC----------CTTCTTCCEEECCSSCCCCCCCC
T ss_pred CcCCCEEECCCCc-cCccChhhhcCCccccEEECCCC-CccccCchh----------cccCCCCCEEECcCCccceecCc
Confidence 3456666666643 55555444556666666666654 233332211 2357788888888886665 34
Q ss_pred -chhcCCCcceeeeccccccccccccccccCcCcccCcccccccccc----eeeccccccccccCCCCcCCCCccEEeec
Q 009534 400 -WLILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLE----RLSLGGLENLRSIYPRALPFPHLKELHVT 474 (532)
Q Consensus 400 -~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~----~L~l~~~~~L~~i~~~~~~~p~L~~L~i~ 474 (532)
.+..+++|++|+++++. +..++. ..+..+++|+ .|+++++ .+..++......++|+.|+++
T Consensus 143 ~~~~~l~~L~~L~Ls~N~-l~~~~~------------~~~~~l~~L~~l~l~L~ls~n-~l~~~~~~~~~~~~L~~L~L~ 208 (276)
T 2z62_A 143 EYFSNLTNLEHLDLSSNK-IQSIYC------------TDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEIRLKELALD 208 (276)
T ss_dssp GGGGGCTTCCEEECCSSC-CCEECG------------GGGHHHHTCTTCCEEEECCSS-CCCEECTTSSCSCCEEEEECC
T ss_pred hhhccCCCCCEEECCCCC-CCcCCH------------HHhhhhhhccccceeeecCCC-cccccCccccCCCcccEEECC
Confidence 36777888888887764 454433 1444555565 6677764 466777666667789999999
Q ss_pred CCCCCCCCCCCCCCCCCceeEEe
Q 009534 475 LCPKLKKLPFDCTSGHERKLIIK 497 (532)
Q Consensus 475 ~C~~L~~lp~~~~~~l~~L~~~~ 497 (532)
+|. ++.+|......+.+|+..+
T Consensus 209 ~n~-l~~~~~~~~~~l~~L~~L~ 230 (276)
T 2z62_A 209 TNQ-LKSVPDGIFDRLTSLQKIW 230 (276)
T ss_dssp SSC-CSCCCTTTTTTCCSCCEEE
T ss_pred CCc-eeecCHhHhcccccccEEE
Confidence 875 7888765433335555443
No 28
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.04 E-value=1e-09 Score=106.63 Aligned_cols=164 Identities=16% Similarity=0.141 Sum_probs=117.4
Q ss_pred CccCceeeEEeccchhHHHhhcCCcccccccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCc
Q 009534 293 LKHLNVLTITLHSFAALQRLLTYPSLQSIVSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGE 372 (532)
Q Consensus 293 L~~L~~L~i~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~ 372 (532)
.++|+.|+++ .+. +..++. .....+++|++|+++++ .+..++...+..+++|++|+++++..+..++.....
T Consensus 31 ~~~l~~L~l~--~n~-i~~~~~--~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~-- 102 (285)
T 1ozn_A 31 PAASQRIFLH--GNR-ISHVPA--ASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFH-- 102 (285)
T ss_dssp CTTCSEEECT--TSC-CCEECT--TTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTT--
T ss_pred CCCceEEEee--CCc-CCccCH--HHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhc--
Confidence 3578888743 321 222221 11223577999999986 477776566888999999999988667766554433
Q ss_pred cccccccCCCCCccEEEEeCCccccCCc--hhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeecc
Q 009534 373 VKRIRETHGFFSLHKVSIWGSKLRHVTW--LILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLG 450 (532)
Q Consensus 373 ~~~~~~~~~l~~L~~L~l~~c~L~~l~~--l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 450 (532)
.+++|++|++++|.+..++. +..+++|++|+++++. +..++. ..+..+++|++|+++
T Consensus 103 --------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~------------~~~~~l~~L~~L~l~ 161 (285)
T 1ozn_A 103 --------GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPD------------DTFRDLGNLTHLFLH 161 (285)
T ss_dssp --------TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCT------------TTTTTCTTCCEEECC
T ss_pred --------CCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCH------------hHhccCCCccEEECC
Confidence 68999999999998888644 7789999999998764 555544 257789999999999
Q ss_pred ccccccccCCC-CcCCCCccEEeecCCCCCCCCCCCC
Q 009534 451 GLENLRSIYPR-ALPFPHLKELHVTLCPKLKKLPFDC 486 (532)
Q Consensus 451 ~~~~L~~i~~~-~~~~p~L~~L~i~~C~~L~~lp~~~ 486 (532)
++ .++.++.. ...+++|+.|++++|.--...|...
T Consensus 162 ~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 197 (285)
T 1ozn_A 162 GN-RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197 (285)
T ss_dssp SS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred CC-cccccCHHHhcCccccCEEECCCCcccccCHhHc
Confidence 86 67788764 6679999999999975333334433
No 29
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.04 E-value=2.2e-09 Score=104.69 Aligned_cols=174 Identities=22% Similarity=0.263 Sum_probs=132.7
Q ss_pred hhcCCccCceeeEEeccchhHHHhhcCCcccccccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecc
Q 009534 289 ELLGLKHLNVLTITLHSFAALQRLLTYPSLQSIVSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDY 368 (532)
Q Consensus 289 ~l~~L~~L~~L~i~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~ 368 (532)
++.++++++.++++ .. .+..++... .++++.|+++++. +..++...+..+++|+.|+++++ .+..++..
T Consensus 5 ~~~~l~~l~~l~~~--~~-~l~~ip~~~-----~~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~- 73 (290)
T 1p9a_G 5 EVSKVASHLEVNCD--KR-NLTALPPDL-----PKDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD- 73 (290)
T ss_dssp EEECSTTCCEEECT--TS-CCSSCCSCC-----CTTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-
T ss_pred cccccCCccEEECC--CC-CCCcCCCCC-----CCCCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCC-ccCcccCC-
Confidence 45677888888843 22 233343321 2459999999965 78887677899999999999996 57766653
Q ss_pred cCCccccccccCCCCCccEEEEeCCccccCCc-hhcCCCcceeeeccccccccccccccccCcCcccCccccccccccee
Q 009534 369 AGGEVKRIRETHGFFSLHKVSIWGSKLRHVTW-LILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERL 447 (532)
Q Consensus 369 ~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~-l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L 447 (532)
. .+++|++|++++|.++.+|. +..+++|+.|+++++. +..++. ..+..+++|++|
T Consensus 74 -~----------~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~------------~~~~~l~~L~~L 129 (290)
T 1p9a_G 74 -G----------TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPL------------GALRGLGELQEL 129 (290)
T ss_dssp -S----------CCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCS------------STTTTCTTCCEE
T ss_pred -C----------CCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCc-CcccCH------------HHHcCCCCCCEE
Confidence 2 58999999999999888876 6789999999998764 666654 367889999999
Q ss_pred eccccccccccCCCC-cCCCCccEEeecCCCCCCCCCCCCCCCCCceeEEecc
Q 009534 448 SLGGLENLRSIYPRA-LPFPHLKELHVTLCPKLKKLPFDCTSGHERKLIIKGQ 499 (532)
Q Consensus 448 ~l~~~~~L~~i~~~~-~~~p~L~~L~i~~C~~L~~lp~~~~~~l~~L~~~~~~ 499 (532)
+++++ .++.++... ..+++|+.|+++++ +++.+|.+....+..|+..+..
T Consensus 130 ~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~ 180 (290)
T 1p9a_G 130 YLKGN-ELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQ 180 (290)
T ss_dssp ECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECC
T ss_pred ECCCC-CCCccChhhcccccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECC
Confidence 99986 677887754 57899999999987 6888987654444666666554
No 30
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.04 E-value=1.3e-09 Score=118.25 Aligned_cols=180 Identities=13% Similarity=0.138 Sum_probs=94.5
Q ss_pred chhhhcCCccCceeeEEeccchhH---------------HHhhcCCcccccccCCCeEEEecCCCCCccccccccccccc
Q 009534 286 LVEELLGLKHLNVLTITLHSFAAL---------------QRLLTYPSLQSIVSNTPSLSLTNCRSLSSLSVLTLASLRHL 350 (532)
Q Consensus 286 ~~~~l~~L~~L~~L~i~~~~~~~l---------------~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L 350 (532)
+...+..+++|++|+++-...... ..++..... ..+++|++|++++|.-...+|.. +.++++|
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~-~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L 275 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKW-DNLKDLTDVEVYNCPNLTKLPTF-LKALPEM 275 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCG-GGCTTCCEEEEECCTTCSSCCTT-TTTCSSC
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhh-cccCCCCEEEecCCcCCccChHH-HhcCCCC
Confidence 345677888899988653332220 003333220 14567999999988767777744 7888888
Q ss_pred cceeeccccCcce--eeecccC-------------------Ccccccc--ccCCCCCccEEEEeCCccc-cCCchhcCCC
Q 009534 351 EALDMRYCKDLEE--MEIDYAG-------------------GEVKRIR--ETHGFFSLHKVSIWGSKLR-HVTWLILAPN 406 (532)
Q Consensus 351 ~~L~i~~c~~L~~--l~~~~~~-------------------~~~~~~~--~~~~l~~L~~L~l~~c~L~-~l~~l~~l~~ 406 (532)
+.|+++++..+.. +|..... .+ ..+. ....+++|++|++++|.+. .+|.+..+++
T Consensus 276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~ 354 (636)
T 4eco_A 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIK 354 (636)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEE
T ss_pred CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCC
Confidence 8888888753442 4432211 00 1111 1233444444544444444 3444444444
Q ss_pred cceeeeccccccccccccccccCcCcccCcccccccc-cceeeccccccccccCCCCcC--CCCccEEeecCCCCCCCCC
Q 009534 407 LKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFAR-LERLSLGGLENLRSIYPRALP--FPHLKELHVTLCPKLKKLP 483 (532)
Q Consensus 407 L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~L~~i~~~~~~--~p~L~~L~i~~C~~L~~lp 483 (532)
|+.|+++++. +..++. .+..+++ |++|+++++. +..+|..... +++|+.|++++|.--..+|
T Consensus 355 L~~L~L~~N~-l~~lp~-------------~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p 419 (636)
T 4eco_A 355 LASLNLAYNQ-ITEIPA-------------NFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDG 419 (636)
T ss_dssp ESEEECCSSE-EEECCT-------------TSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSSCTTTTTT
T ss_pred CCEEECCCCc-cccccH-------------hhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcCCcCCCcch
Confidence 4444444432 233333 4555666 6666666643 4455543333 2356666666654444444
No 31
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.04 E-value=2.9e-10 Score=112.42 Aligned_cols=100 Identities=12% Similarity=0.066 Sum_probs=54.9
Q ss_pred CCCCccEEEEeCCccccCCc--h-hcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccc
Q 009534 381 GFFSLHKVSIWGSKLRHVTW--L-ILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRS 457 (532)
Q Consensus 381 ~l~~L~~L~l~~c~L~~l~~--l-~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~ 457 (532)
.+++|++|++++|.+..++. + ..+++|++|++++|. +..++. ...+++|++|+++++ .++.
T Consensus 142 ~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~--------------~~~l~~L~~L~Ls~N-~l~~ 205 (317)
T 3o53_A 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKG--------------QVVFAKLKTLDLSSN-KLAF 205 (317)
T ss_dssp GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC--------------CCCCTTCCEEECCSS-CCCE
T ss_pred ccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Cccccc--------------ccccccCCEEECCCC-cCCc
Confidence 46666666666665555321 2 345666666666554 444422 223566666666664 4555
Q ss_pred cCCCCcCCCCccEEeecCCCCCCCCCCCCCCCCCceeEEec
Q 009534 458 IYPRALPFPHLKELHVTLCPKLKKLPFDCTSGHERKLIIKG 498 (532)
Q Consensus 458 i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~l~~L~~~~~ 498 (532)
++.....+++|+.|++++| +++.+|...... +.|+..+.
T Consensus 206 l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l-~~L~~L~l 244 (317)
T 3o53_A 206 MGPEFQSAAGVTWISLRNN-KLVLIEKALRFS-QNLEHFDL 244 (317)
T ss_dssp ECGGGGGGTTCSEEECTTS-CCCEECTTCCCC-TTCCEEEC
T ss_pred chhhhcccCcccEEECcCC-cccchhhHhhcC-CCCCEEEc
Confidence 5555555666666666665 455566543332 44444433
No 32
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.03 E-value=4.8e-10 Score=109.50 Aligned_cols=123 Identities=18% Similarity=0.250 Sum_probs=66.0
Q ss_pred ccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCCch
Q 009534 322 VSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTWL 401 (532)
Q Consensus 322 l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~l 401 (532)
+++|+.|+++++. +..++. +..+++|+.|++++| .+..++ . ...+++|++|++++|+++.++.+
T Consensus 89 l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~L~~n-~i~~~~--~----------l~~l~~L~~L~l~~n~l~~~~~l 152 (291)
T 1h6t_A 89 LKNLGWLFLDENK-VKDLSS--LKDLKKLKSLSLEHN-GISDIN--G----------LVHLPQLESLYLGNNKITDITVL 152 (291)
T ss_dssp CTTCCEEECCSSC-CCCGGG--GTTCTTCCEEECTTS-CCCCCG--G----------GGGCTTCCEEECCSSCCCCCGGG
T ss_pred CCCCCEEECCCCc-CCCChh--hccCCCCCEEECCCC-cCCCCh--h----------hcCCCCCCEEEccCCcCCcchhh
Confidence 3445555555543 444432 455555555555554 233321 1 12456666666666655555556
Q ss_pred hcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccccCCCCcCCCCccEEeecCCC
Q 009534 402 ILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIYPRALPFPHLKELHVTLCP 477 (532)
Q Consensus 402 ~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~ 477 (532)
..+++|+.|++++|. +..++ .+..+++|+.|+++++ .++.++. ...+++|+.|++++++
T Consensus 153 ~~l~~L~~L~L~~N~-l~~~~--------------~l~~l~~L~~L~L~~N-~i~~l~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 153 SRLTKLDTLSLEDNQ-ISDIV--------------PLAGLTKLQNLYLSKN-HISDLRA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp GGCTTCSEEECCSSC-CCCCG--------------GGTTCTTCCEEECCSS-CCCBCGG-GTTCTTCSEEEEEEEE
T ss_pred ccCCCCCEEEccCCc-cccch--------------hhcCCCccCEEECCCC-cCCCChh-hccCCCCCEEECcCCc
Confidence 666666666665543 33332 1444666666666665 4555543 4556666666666653
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.03 E-value=4.5e-10 Score=112.39 Aligned_cols=129 Identities=12% Similarity=0.155 Sum_probs=89.1
Q ss_pred ccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCCch
Q 009534 322 VSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTWL 401 (532)
Q Consensus 322 l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~l 401 (532)
+++|+.|+++++. +..++. +..+++|+.|++++| .+..++. ...+++|++|++++|.+..++.+
T Consensus 198 l~~L~~L~l~~n~-l~~~~~--~~~~~~L~~L~l~~n-~l~~~~~------------~~~l~~L~~L~l~~n~l~~~~~~ 261 (347)
T 4fmz_A 198 LTSLHYFTAYVNQ-ITDITP--VANMTRLNSLKIGNN-KITDLSP------------LANLSQLTWLEIGTNQISDINAV 261 (347)
T ss_dssp CTTCCEEECCSSC-CCCCGG--GGGCTTCCEEECCSS-CCCCCGG------------GTTCTTCCEEECCSSCCCCCGGG
T ss_pred CCccceeecccCC-CCCCch--hhcCCcCCEEEccCC-ccCCCcc------------hhcCCCCCEEECCCCccCCChhH
Confidence 3556666666643 444433 556677777777776 3443333 23688999999999988888878
Q ss_pred hcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccccCCCCcCCCCccEEeecCCCCCCC
Q 009534 402 ILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIYPRALPFPHLKELHVTLCPKLKK 481 (532)
Q Consensus 402 ~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~ 481 (532)
..+++|+.|++++|. +..+ . .+..+++|+.|++++|+--...+.....+++|+.|++++|+ +..
T Consensus 262 ~~l~~L~~L~l~~n~-l~~~-~-------------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~ 325 (347)
T 4fmz_A 262 KDLTKLKMLNVGSNQ-ISDI-S-------------VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITD 325 (347)
T ss_dssp TTCTTCCEEECCSSC-CCCC-G-------------GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCC
T ss_pred hcCCCcCEEEccCCc-cCCC-h-------------hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-ccc
Confidence 889999999998874 5554 2 46678899999999875332333345678899999999987 444
Q ss_pred C
Q 009534 482 L 482 (532)
Q Consensus 482 l 482 (532)
+
T Consensus 326 ~ 326 (347)
T 4fmz_A 326 I 326 (347)
T ss_dssp C
T ss_pred c
Confidence 4
No 34
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.02 E-value=2.6e-09 Score=119.06 Aligned_cols=124 Identities=15% Similarity=0.171 Sum_probs=73.1
Q ss_pred chhhhcCCccCceeeEEeccchhH---------------HHhhcCCcccccccCCCeEEEecCCCCCccccccccccccc
Q 009534 286 LVEELLGLKHLNVLTITLHSFAAL---------------QRLLTYPSLQSIVSNTPSLSLTNCRSLSSLSVLTLASLRHL 350 (532)
Q Consensus 286 ~~~~l~~L~~L~~L~i~~~~~~~l---------------~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L 350 (532)
+...+..+++|+.|+++-...... ..++.... ...+++|+.|++++|.....+|.. +.++++|
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~-f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L 517 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELS-WSNLKDLTDVELYNCPNMTQLPDF-LYDLPEL 517 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCC-GGGCTTCCEEEEESCTTCCSCCGG-GGGCSSC
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhh-hccCCCCCEEECcCCCCCccChHH-HhCCCCC
Confidence 445688899999999663333220 01333322 114577999999998877888854 8899999
Q ss_pred cceeeccccCcce--eeecccCCccccccccCCCCCccEEEEeCCccccCCc---hhcCCCcceeeeccc
Q 009534 351 EALDMRYCKDLEE--MEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTW---LILAPNLKLIQMYDC 415 (532)
Q Consensus 351 ~~L~i~~c~~L~~--l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~---l~~l~~L~~L~l~~c 415 (532)
+.|+++++..+.. +|..+... ......+++|++|++++|++..+|. ++.+++|+.|+++++
T Consensus 518 ~~L~Ls~N~~lsg~~iP~~i~~L----~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N 583 (876)
T 4ecn_A 518 QSLNIACNRGISAAQLKADWTRL----ADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN 583 (876)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHH----HHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTS
T ss_pred CEEECcCCCCcccccchHHHHhh----hhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCC
Confidence 9999998753442 44322110 0011234455566665555555553 455555555555544
No 35
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.01 E-value=7.8e-10 Score=107.97 Aligned_cols=153 Identities=17% Similarity=0.270 Sum_probs=116.2
Q ss_pred cCCccCceeeEEeccchhHHHhhcCCcccccccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccC
Q 009534 291 LGLKHLNVLTITLHSFAALQRLLTYPSLQSIVSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAG 370 (532)
Q Consensus 291 ~~L~~L~~L~i~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~ 370 (532)
..+++|+.|+++ .+ .+..++. ...+++|+.|+++++. +..++. +..+++|+.|+++++ .+..++.
T Consensus 43 ~~l~~L~~L~l~--~~-~i~~~~~----~~~l~~L~~L~L~~n~-l~~~~~--l~~l~~L~~L~l~~n-~l~~~~~---- 107 (291)
T 1h6t_A 43 NELNSIDQIIAN--NS-DIKSVQG----IQYLPNVTKLFLNGNK-LTDIKP--LANLKNLGWLFLDEN-KVKDLSS---- 107 (291)
T ss_dssp HHHHTCCEEECT--TS-CCCCCTT----GGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSS-CCCCGGG----
T ss_pred hhcCcccEEEcc--CC-CcccChh----HhcCCCCCEEEccCCc-cCCCcc--cccCCCCCEEECCCC-cCCCChh----
Confidence 346677788743 33 1222221 2235789999999975 777765 788999999999987 4554432
Q ss_pred CccccccccCCCCCccEEEEeCCccccCCchhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeecc
Q 009534 371 GEVKRIRETHGFFSLHKVSIWGSKLRHVTWLILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLG 450 (532)
Q Consensus 371 ~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 450 (532)
...+++|++|++++|.+..++.+..+++|+.|++++|. +..+ . .+..+++|+.|+++
T Consensus 108 --------l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~-l~~~-~-------------~l~~l~~L~~L~L~ 164 (291)
T 1h6t_A 108 --------LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNK-ITDI-T-------------VLSRLTKLDTLSLE 164 (291)
T ss_dssp --------GTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSC-CCCC-G-------------GGGGCTTCSEEECC
T ss_pred --------hccCCCCCEEECCCCcCCCChhhcCCCCCCEEEccCCc-CCcc-h-------------hhccCCCCCEEEcc
Confidence 23689999999999999998889999999999998874 5555 3 57779999999999
Q ss_pred ccccccccCCCCcCCCCccEEeecCCCCCCCCCC
Q 009534 451 GLENLRSIYPRALPFPHLKELHVTLCPKLKKLPF 484 (532)
Q Consensus 451 ~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~ 484 (532)
++ .+..++. ...+++|+.|++++| .+..+|.
T Consensus 165 ~N-~l~~~~~-l~~l~~L~~L~L~~N-~i~~l~~ 195 (291)
T 1h6t_A 165 DN-QISDIVP-LAGLTKLQNLYLSKN-HISDLRA 195 (291)
T ss_dssp SS-CCCCCGG-GTTCTTCCEEECCSS-CCCBCGG
T ss_pred CC-ccccchh-hcCCCccCEEECCCC-cCCCChh
Confidence 87 5777765 778999999999998 5666654
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.01 E-value=5.8e-10 Score=113.62 Aligned_cols=186 Identities=17% Similarity=0.153 Sum_probs=87.3
Q ss_pred hhcCCccCceeeEEeccchhHHHhhcCCcccccccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecc
Q 009534 289 ELLGLKHLNVLTITLHSFAALQRLLTYPSLQSIVSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDY 368 (532)
Q Consensus 289 ~l~~L~~L~~L~i~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~ 368 (532)
.+..+++|+.|+++ .+ .+..++.. ....+++|++|+++++. +..++...+..+++|+.|+++++. +..++...
T Consensus 112 ~~~~l~~L~~L~L~--~n-~l~~l~~~--~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~ 184 (390)
T 3o6n_A 112 VFQNVPLLTVLVLE--RN-DLSSLPRG--IFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNR-LTHVDLSL 184 (390)
T ss_dssp TTTTCTTCCEEECC--SS-CCCCCCTT--TTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSC-CSBCCGGG
T ss_pred HhcCCCCCCEEECC--CC-ccCcCCHH--HhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCc-CCcccccc
Confidence 34556666666633 22 11222211 11234567777777754 555655556677777777777642 22221110
Q ss_pred cC-----------Ccc-ccc---------------cccCCCCCccEEEEeCCccccCCchhcCCCcceeeeccccccccc
Q 009534 369 AG-----------GEV-KRI---------------RETHGFFSLHKVSIWGSKLRHVTWLILAPNLKLIQMYDCRCLEEI 421 (532)
Q Consensus 369 ~~-----------~~~-~~~---------------~~~~~l~~L~~L~l~~c~L~~l~~l~~l~~L~~L~l~~c~~l~~i 421 (532)
.. .+. ..+ .....+++|++|++++|.++..+++..+++|+.|+++++. +..+
T Consensus 185 l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~-l~~~ 263 (390)
T 3o6n_A 185 IPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE-LEKI 263 (390)
T ss_dssp CTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC-CCEE
T ss_pred ccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCc-CCCc
Confidence 00 000 000 0011234566666666655555566666777777776653 3333
Q ss_pred cccccccCc-----------CcccCcccccccccceeeccccccccccCCCCcCCCCccEEeecCCCCCCCCCC
Q 009534 422 ISLEKLGEV-----------PSEEMQNLIPFARLERLSLGGLENLRSIYPRALPFPHLKELHVTLCPKLKKLPF 484 (532)
Q Consensus 422 ~~~~~~~~~-----------~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~ 484 (532)
+...-..-. -...+.....+++|+.|+++++ .+..+|.....+++|+.|++++|+ +..+|.
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~~ 335 (390)
T 3o6n_A 264 MYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS-IVTLKL 335 (390)
T ss_dssp ESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCCCC
T ss_pred ChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCc-cceeCc
Confidence 210000000 0000012334556666666655 355555545556666666666654 455554
No 37
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.01 E-value=1.3e-09 Score=102.47 Aligned_cols=128 Identities=19% Similarity=0.165 Sum_probs=86.3
Q ss_pred cCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCCc--
Q 009534 323 SNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTW-- 400 (532)
Q Consensus 323 ~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~-- 400 (532)
++|+.|+++++. +..++...+..+++|+.|+++++ .+..++..... .+++|++|++++|+++.++.
T Consensus 40 ~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~----------~l~~L~~L~Ls~N~l~~l~~~~ 107 (229)
T 3e6j_A 40 TNAQILYLHDNQ-ITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFD----------SLTQLTVLDLGTNQLTVLPSAV 107 (229)
T ss_dssp TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT----------TCTTCCEEECCSSCCCCCCTTT
T ss_pred CCCCEEEcCCCc-cCccCHHHhhCccCCcEEECCCC-CCCCcChhhcc----------cCCCcCEEECCCCcCCccChhH
Confidence 447778887754 66665455677777888888775 45555554433 57778888888777777654
Q ss_pred hhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccccCCC-CcCCCCccEEeecCCC
Q 009534 401 LILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIYPR-ALPFPHLKELHVTLCP 477 (532)
Q Consensus 401 l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~~-~~~~p~L~~L~i~~C~ 477 (532)
+..+++|+.|+++++. +..++. .+..+++|+.|+++++ ++..++.. ...+++|+.|++.+.|
T Consensus 108 ~~~l~~L~~L~Ls~N~-l~~lp~-------------~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 108 FDRLVHLKELFMCCNK-LTELPR-------------GIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TTTCTTCCEEECCSSC-CCSCCT-------------TGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred hCcchhhCeEeccCCc-ccccCc-------------ccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCC
Confidence 5677788888886543 566655 6667778888888775 56666653 4457777777777654
No 38
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.01 E-value=1.3e-09 Score=103.89 Aligned_cols=153 Identities=18% Similarity=0.173 Sum_probs=116.1
Q ss_pred ccCceeeEEeccchhHHHhhcCCcccccccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCcc
Q 009534 294 KHLNVLTITLHSFAALQRLLTYPSLQSIVSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEV 373 (532)
Q Consensus 294 ~~L~~L~i~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~ 373 (532)
++|+.|+++ .+. +..+.. .....+++|++|+++++ .+..++...+..+++|+.|+++++ .+..++.....
T Consensus 35 ~~l~~L~L~--~n~-l~~~~~--~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~--- 104 (251)
T 3m19_A 35 ADTEKLDLQ--STG-LATLSD--ATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLANN-QLASLPLGVFD--- 104 (251)
T ss_dssp TTCCEEECT--TSC-CCCCCT--TTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTT---
T ss_pred CCCCEEEcc--CCC-cCccCH--hHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECCCC-cccccChhHhc---
Confidence 467777743 322 122211 12223578999999996 478887777889999999999986 56666665544
Q ss_pred ccccccCCCCCccEEEEeCCccccCCc--hhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccc
Q 009534 374 KRIRETHGFFSLHKVSIWGSKLRHVTW--LILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGG 451 (532)
Q Consensus 374 ~~~~~~~~l~~L~~L~l~~c~L~~l~~--l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 451 (532)
.+++|++|++++|+++.++. +..+++|+.|+++++ .+..++. ..+..+++|+.|++++
T Consensus 105 -------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~------------~~~~~l~~L~~L~L~~ 164 (251)
T 3m19_A 105 -------HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPA------------GAFDKLTNLQTLSLST 164 (251)
T ss_dssp -------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT------------TTTTTCTTCCEEECCS
T ss_pred -------ccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCH------------HHcCcCcCCCEEECCC
Confidence 68999999999999988875 678999999999876 4676655 2577899999999998
Q ss_pred cccccccCC-CCcCCCCccEEeecCCC
Q 009534 452 LENLRSIYP-RALPFPHLKELHVTLCP 477 (532)
Q Consensus 452 ~~~L~~i~~-~~~~~p~L~~L~i~~C~ 477 (532)
+ .++.++. ....+++|+.|++.+++
T Consensus 165 N-~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 165 N-QLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp S-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred C-cCCccCHHHHhCCCCCCEEEeeCCc
Confidence 6 5777776 45678999999999875
No 39
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.01 E-value=3.8e-10 Score=121.28 Aligned_cols=151 Identities=17% Similarity=0.231 Sum_probs=92.4
Q ss_pred hhhhcCCccCceeeEEeccchhHHHhhcCCcccccccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeee
Q 009534 287 VEELLGLKHLNVLTITLHSFAALQRLLTYPSLQSIVSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEI 366 (532)
Q Consensus 287 ~~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~ 366 (532)
+..+..+++|+.|+++ .+. +..++. ...|++|+.|+|++|. +..++ .+..+++|+.|++++| .+..++.
T Consensus 58 l~~l~~l~~L~~L~Ls--~N~-l~~~~~----l~~l~~L~~L~Ls~N~-l~~l~--~l~~l~~L~~L~Ls~N-~l~~l~~ 126 (605)
T 1m9s_A 58 VQGIQYLPNVTKLFLN--GNK-LTDIKP----LTNLKNLGWLFLDENK-IKDLS--SLKDLKKLKSLSLEHN-GISDING 126 (605)
T ss_dssp CTTGGGCTTCCEEECT--TSC-CCCCGG----GGGCTTCCEEECCSSC-CCCCT--TSTTCTTCCEEECTTS-CCCCCGG
T ss_pred ChHHccCCCCCEEEee--CCC-CCCChh----hccCCCCCEEECcCCC-CCCCh--hhccCCCCCEEEecCC-CCCCCcc
Confidence 3455566666666633 221 111111 2234567777777653 55554 2666677777777765 3443321
Q ss_pred cccCCccccccccCCCCCccEEEEeCCccccCCchhcCCCcceeeeccccccccccccccccCcCcccCcccccccccce
Q 009534 367 DYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTWLILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLER 446 (532)
Q Consensus 367 ~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~ 446 (532)
...+++|+.|+|++|.+..++.+..+++|+.|+|++|. +..++ .+..+++|+.
T Consensus 127 ------------l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~-l~~~~--------------~l~~l~~L~~ 179 (605)
T 1m9s_A 127 ------------LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQ-ISDIV--------------PLAGLTKLQN 179 (605)
T ss_dssp ------------GGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSC-CCCCG--------------GGTTCTTCCE
T ss_pred ------------ccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCc-CCCch--------------hhccCCCCCE
Confidence 22577777777777777777667777777777777664 44332 2556788888
Q ss_pred eeccccccccccCCCCcCCCCccEEeecCCC
Q 009534 447 LSLGGLENLRSIYPRALPFPHLKELHVTLCP 477 (532)
Q Consensus 447 L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~ 477 (532)
|+|++| .+..++ .+..+++|+.|++++|+
T Consensus 180 L~Ls~N-~i~~l~-~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 180 LYLSKN-HISDLR-ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp EECCSS-CCCBCG-GGTTCTTCSEEECCSEE
T ss_pred EECcCC-CCCCCh-HHccCCCCCEEEccCCc
Confidence 888876 466664 46677888888888775
No 40
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.00 E-value=4e-10 Score=121.71 Aligned_cols=150 Identities=15% Similarity=0.154 Sum_probs=94.7
Q ss_pred ccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCcccc--CC
Q 009534 322 VSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRH--VT 399 (532)
Q Consensus 322 l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~--l~ 399 (532)
+++|+.|+++++.-....+...+..+++|+.|++++|. +....... ...+++|++|++++|.+.. +|
T Consensus 398 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~----------~~~l~~L~~L~l~~n~l~~~~~~ 466 (606)
T 3vq2_A 398 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN-TKIDFDGI----------FLGLTSLNTLKMAGNSFKDNTLS 466 (606)
T ss_dssp CTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSC-CEECCTTT----------TTTCTTCCEEECTTCEEGGGEEC
T ss_pred CCCCCeeECCCCccCCccChhhhhccccCCEEECcCCC-CCccchhh----------hcCCCCCCEEECCCCcCCCcchH
Confidence 34466666655432222222335556666666666653 22222222 2357888888888886654 34
Q ss_pred c-hhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeecccccccccc-CCCCcCCCCccEEeecCCC
Q 009534 400 W-LILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSI-YPRALPFPHLKELHVTLCP 477 (532)
Q Consensus 400 ~-l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i-~~~~~~~p~L~~L~i~~C~ 477 (532)
. +..+++|+.|++++|. +..++. ..+..+++|++|+++++. +..+ |.....+++|+.|++++|.
T Consensus 467 ~~~~~l~~L~~L~Ls~n~-l~~~~~------------~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 467 NVFANTTNLTFLDLSKCQ-LEQISW------------GVFDTLHRLQLLNMSHNN-LLFLDSSHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp SCCTTCTTCCEEECTTSC-CCEECT------------TTTTTCTTCCEEECCSSC-CSCEEGGGTTTCTTCCEEECTTSC
T ss_pred HhhccCCCCCEEECCCCc-CCccCh------------hhhcccccCCEEECCCCc-CCCcCHHHccCCCcCCEEECCCCc
Confidence 3 6778888888888774 444433 267889999999999984 4444 6667789999999999985
Q ss_pred CCCCCCCCCCCCCCceeEEe
Q 009534 478 KLKKLPFDCTSGHERKLIIK 497 (532)
Q Consensus 478 ~L~~lp~~~~~~l~~L~~~~ 497 (532)
++.+|.......++|+..+
T Consensus 533 -l~~~p~~~~~l~~~L~~l~ 551 (606)
T 3vq2_A 533 -IETSKGILQHFPKSLAFFN 551 (606)
T ss_dssp -CCCEESCGGGSCTTCCEEE
T ss_pred -CcccCHhHhhhcccCcEEE
Confidence 8888876433322355444
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.00 E-value=6.2e-10 Score=120.06 Aligned_cols=187 Identities=17% Similarity=0.152 Sum_probs=86.6
Q ss_pred hhcCCccCceeeEEeccchhHHHhhcCCcccccccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecc
Q 009534 289 ELLGLKHLNVLTITLHSFAALQRLLTYPSLQSIVSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDY 368 (532)
Q Consensus 289 ~l~~L~~L~~L~i~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~ 368 (532)
.+..+++|+.|+++ ++ .+..++.. ....+++|++|+++++. +..++...+..+++|+.|+++++. +..++...
T Consensus 118 ~~~~l~~L~~L~L~--~n-~l~~l~~~--~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~ 190 (597)
T 3oja_B 118 VFQNVPLLTVLVLE--RN-DLSSLPRG--IFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNR-LTHVDLSL 190 (597)
T ss_dssp TTTTCTTCCEEECC--SS-CCCCCCTT--TTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSC-CSBCCGGG
T ss_pred HHcCCCCCCEEEee--CC-CCCCCCHH--HhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCC-CCCcChhh
Confidence 34556666666633 22 11222211 11234667777777754 566655556777777777777652 33222111
Q ss_pred cC-----------Ccc-cccc---------------ccCCCCCccEEEEeCCccccCCchhcCCCcceeeeccccccccc
Q 009534 369 AG-----------GEV-KRIR---------------ETHGFFSLHKVSIWGSKLRHVTWLILAPNLKLIQMYDCRCLEEI 421 (532)
Q Consensus 369 ~~-----------~~~-~~~~---------------~~~~l~~L~~L~l~~c~L~~l~~l~~l~~L~~L~l~~c~~l~~i 421 (532)
.. .+. ..+. ....+++|++|++++|.++..+++..+++|+.|++++|. +..+
T Consensus 191 l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~-l~~~ 269 (597)
T 3oja_B 191 IPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE-LEKI 269 (597)
T ss_dssp CTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC-CCEE
T ss_pred hhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCc-cCCC
Confidence 00 000 0000 001123455555555555555555666666666665543 2222
Q ss_pred cccccccCc-----------CcccCcccccccccceeeccccccccccCCCCcCCCCccEEeecCCCCCCCCCCC
Q 009534 422 ISLEKLGEV-----------PSEEMQNLIPFARLERLSLGGLENLRSIYPRALPFPHLKELHVTLCPKLKKLPFD 485 (532)
Q Consensus 422 ~~~~~~~~~-----------~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~ 485 (532)
++..-..-. -..-+.....+++|+.|+++++ .+..+|.....+++|+.|++++|+ +..+|..
T Consensus 270 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N~-l~~~~~~ 342 (597)
T 3oja_B 270 MYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS-IVTLKLS 342 (597)
T ss_dssp ESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCCCCC
T ss_pred CHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCCC-CCCcChh
Confidence 210000000 0000013344566666666654 344555555556666666666653 4455543
No 42
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.99 E-value=9.3e-10 Score=110.06 Aligned_cols=104 Identities=12% Similarity=0.092 Sum_probs=77.1
Q ss_pred CCCCCccEEEEeCCccccCCchhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccccC
Q 009534 380 HGFFSLHKVSIWGSKLRHVTWLILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIY 459 (532)
Q Consensus 380 ~~l~~L~~L~l~~c~L~~l~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~ 459 (532)
..+++|++|++++|.++.++.+..+++|+.|++++|. +..+ . .+..+++|+.|++++| .+..++
T Consensus 218 ~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~-~-------------~~~~l~~L~~L~l~~n-~l~~~~ 281 (347)
T 4fmz_A 218 ANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQ-ISDI-N-------------AVKDLTKLKMLNVGSN-QISDIS 281 (347)
T ss_dssp GGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC-CCCC-G-------------GGTTCTTCCEEECCSS-CCCCCG
T ss_pred hcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCc-cCCC-h-------------hHhcCCCcCEEEccCC-ccCCCh
Confidence 4689999999999998888888999999999998874 5554 2 4677899999999997 577774
Q ss_pred CCCcCCCCccEEeecCCCCCCCCCCCCCCCCCceeEEecchh
Q 009534 460 PRALPFPHLKELHVTLCPKLKKLPFDCTSGHERKLIIKGQEE 501 (532)
Q Consensus 460 ~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~l~~L~~~~~~~~ 501 (532)
....+++|+.|++++|+--...|..... ++.|+..+....
T Consensus 282 -~~~~l~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~L~~n 321 (347)
T 4fmz_A 282 -VLNNLSQLNSLFLNNNQLGNEDMEVIGG-LTNLTTLFLSQN 321 (347)
T ss_dssp -GGGGCTTCSEEECCSSCCCGGGHHHHHT-CTTCSEEECCSS
T ss_pred -hhcCCCCCCEEECcCCcCCCcChhHhhc-cccCCEEEccCC
Confidence 3667899999999999543333332222 245555554433
No 43
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.98 E-value=5.6e-10 Score=117.19 Aligned_cols=88 Identities=14% Similarity=0.091 Sum_probs=43.8
Q ss_pred CCCCccEEEEeCCccccCC--chh-cCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccc
Q 009534 381 GFFSLHKVSIWGSKLRHVT--WLI-LAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRS 457 (532)
Q Consensus 381 ~l~~L~~L~l~~c~L~~l~--~l~-~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~ 457 (532)
.+++|++|++++|.+..++ .+. .+++|+.|++++|. +..++. ...+++|+.|+++++ .+..
T Consensus 142 ~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~--------------~~~l~~L~~L~Ls~N-~l~~ 205 (487)
T 3oja_A 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKG--------------QVVFAKLKTLDLSSN-KLAF 205 (487)
T ss_dssp GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC--------------CCCCTTCCEEECCSS-CCCE
T ss_pred CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-cccccc--------------cccCCCCCEEECCCC-CCCC
Confidence 4556666666665554422 122 45566666665543 333322 223555555555554 3445
Q ss_pred cCCCCcCCCCccEEeecCCCCCCCCCCC
Q 009534 458 IYPRALPFPHLKELHVTLCPKLKKLPFD 485 (532)
Q Consensus 458 i~~~~~~~p~L~~L~i~~C~~L~~lp~~ 485 (532)
+|.....+++|+.|++++| ++..+|..
T Consensus 206 ~~~~~~~l~~L~~L~Ls~N-~l~~lp~~ 232 (487)
T 3oja_A 206 MGPEFQSAAGVTWISLRNN-KLVLIEKA 232 (487)
T ss_dssp ECGGGGGGTTCSEEECTTS-CCCEECTT
T ss_pred CCHhHcCCCCccEEEecCC-cCcccchh
Confidence 5444445555555555554 34445543
No 44
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.98 E-value=6.7e-10 Score=119.37 Aligned_cols=153 Identities=16% Similarity=0.270 Sum_probs=113.0
Q ss_pred hcCCccCceeeEEeccchhHHHhhcCCcccccccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeeccc
Q 009534 290 LLGLKHLNVLTITLHSFAALQRLLTYPSLQSIVSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYA 369 (532)
Q Consensus 290 l~~L~~L~~L~i~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~ 369 (532)
+..|++|+.|+++ .+. +..++. ...|++|+.|+|++|. +..++. +..+++|+.|++++| .+..++ .
T Consensus 39 ~~~L~~L~~L~l~--~n~-i~~l~~----l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~--~- 104 (605)
T 1m9s_A 39 QNELNSIDQIIAN--NSD-IKSVQG----IQYLPNVTKLFLNGNK-LTDIKP--LTNLKNLGWLFLDEN-KIKDLS--S- 104 (605)
T ss_dssp HHHHTTCCCCBCT--TCC-CCCCTT----GGGCTTCCEEECTTSC-CCCCGG--GGGCTTCCEEECCSS-CCCCCT--T-
T ss_pred hhcCCCCCEEECc--CCC-CCCChH----HccCCCCCEEEeeCCC-CCCChh--hccCCCCCEEECcCC-CCCCCh--h-
Confidence 3445667777743 321 222221 2345789999999975 777765 788999999999987 455443 1
Q ss_pred CCccccccccCCCCCccEEEEeCCccccCCchhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeec
Q 009534 370 GGEVKRIRETHGFFSLHKVSIWGSKLRHVTWLILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSL 449 (532)
Q Consensus 370 ~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l 449 (532)
...+++|++|+|++|.+..++.+..+++|+.|+|++|. +..+ . .+..+++|+.|+|
T Consensus 105 ---------l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~-l~~l-~-------------~l~~l~~L~~L~L 160 (605)
T 1m9s_A 105 ---------LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNK-ITDI-T-------------VLSRLTKLDTLSL 160 (605)
T ss_dssp ---------STTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSC-CCCC-G-------------GGGSCTTCSEEEC
T ss_pred ---------hccCCCCCEEEecCCCCCCCccccCCCccCEEECCCCc-cCCc-h-------------hhcccCCCCEEEC
Confidence 23689999999999988888889999999999998874 5554 3 5777899999999
Q ss_pred cccccccccCCCCcCCCCccEEeecCCCCCCCCC
Q 009534 450 GGLENLRSIYPRALPFPHLKELHVTLCPKLKKLP 483 (532)
Q Consensus 450 ~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp 483 (532)
++| .+..++. +..+++|+.|++++| .+..+|
T Consensus 161 s~N-~l~~~~~-l~~l~~L~~L~Ls~N-~i~~l~ 191 (605)
T 1m9s_A 161 EDN-QISDIVP-LAGLTKLQNLYLSKN-HISDLR 191 (605)
T ss_dssp CSS-CCCCCGG-GTTCTTCCEEECCSS-CCCBCG
T ss_pred cCC-cCCCchh-hccCCCCCEEECcCC-CCCCCh
Confidence 987 4666655 778999999999987 555554
No 45
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.98 E-value=2.6e-09 Score=98.66 Aligned_cols=130 Identities=18% Similarity=0.139 Sum_probs=95.2
Q ss_pred cCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCCc--
Q 009534 323 SNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTW-- 400 (532)
Q Consensus 323 ~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~-- 400 (532)
++|++|+++++. +..++...+..+++|++|+++++ .++.++..... .+++|++|++++|+++.++.
T Consensus 28 ~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~----------~l~~L~~L~Ls~n~l~~~~~~~ 95 (208)
T 2o6s_A 28 AQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFN----------KLTSLTYLNLSTNQLQSLPNGV 95 (208)
T ss_dssp TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTT----------TCTTCCEEECCSSCCCCCCTTT
T ss_pred CCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCC-ccCccChhhcC----------CCCCcCEEECCCCcCCccCHhH
Confidence 458888888864 77777666778888888888885 56656554433 57888889888888777765
Q ss_pred hhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccccCCC-CcCCCCccEEeecCCCC
Q 009534 401 LILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIYPR-ALPFPHLKELHVTLCPK 478 (532)
Q Consensus 401 l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~~-~~~~p~L~~L~i~~C~~ 478 (532)
+..+++|+.|+++++. +..++. ..+..+++|+.|++.++ .++.++.. ...+++|+.|++.+++-
T Consensus 96 ~~~l~~L~~L~L~~N~-l~~~~~------------~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 96 FDKLTQLKELALNTNQ-LQSLPD------------GVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCT------------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred hcCccCCCEEEcCCCc-CcccCH------------hHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCe
Confidence 5778888888887653 555544 24567888888888875 56677664 45688888888888643
No 46
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.97 E-value=9.6e-10 Score=107.99 Aligned_cols=102 Identities=15% Similarity=0.208 Sum_probs=64.9
Q ss_pred CCCCccEEEEeCCcccc--CC-chhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccc
Q 009534 381 GFFSLHKVSIWGSKLRH--VT-WLILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRS 457 (532)
Q Consensus 381 ~l~~L~~L~l~~c~L~~--l~-~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~ 457 (532)
.+++|++|++++|.+.. +| .+..+++|+.|++++|. +..++. ..+..+++|+.|+++++. +..
T Consensus 148 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~------------~~~~~l~~L~~L~L~~N~-l~~ 213 (306)
T 2z66_A 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSP------------TAFNSLSSLQVLNMSHNN-FFS 213 (306)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECT------------TTTTTCTTCCEEECTTSC-CSB
T ss_pred cCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC-cCCcCH------------HHhcCCCCCCEEECCCCc-cCc
Confidence 56777777777775543 33 25667777777777654 444432 267778899999998864 566
Q ss_pred cCC-CCcCCCCccEEeecCCCCCCCCCCCCCCCCCceeEE
Q 009534 458 IYP-RALPFPHLKELHVTLCPKLKKLPFDCTSGHERKLII 496 (532)
Q Consensus 458 i~~-~~~~~p~L~~L~i~~C~~L~~lp~~~~~~l~~L~~~ 496 (532)
++. ....+++|+.|++++|.--...|.........|+..
T Consensus 214 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L 253 (306)
T 2z66_A 214 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 253 (306)
T ss_dssp CCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEE
T ss_pred cChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEE
Confidence 655 445688999999999865444454433322344444
No 47
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.97 E-value=1.9e-09 Score=109.78 Aligned_cols=31 Identities=29% Similarity=0.401 Sum_probs=16.0
Q ss_pred CCCCccEEEEeCCccccCCchhcCCCcceeee
Q 009534 381 GFFSLHKVSIWGSKLRHVTWLILAPNLKLIQM 412 (532)
Q Consensus 381 ~l~~L~~L~l~~c~L~~l~~l~~l~~L~~L~l 412 (532)
.+++|++|++++|.++.++ +..+++|+.|++
T Consensus 163 ~l~~L~~L~l~~n~l~~~~-~~~l~~L~~L~l 193 (390)
T 3o6n_A 163 ATTSLQNLQLSSNRLTHVD-LSLIPSLFHANV 193 (390)
T ss_dssp SCTTCCEEECCSSCCSBCC-GGGCTTCSEEEC
T ss_pred CCCCCCEEECCCCcCCccc-cccccccceeec
Confidence 4566666666666555543 334444444433
No 48
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.97 E-value=2.7e-09 Score=107.03 Aligned_cols=190 Identities=13% Similarity=0.099 Sum_probs=121.0
Q ss_pred ccCceeeEEeccchhHHHhhcCCcccccccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCcc
Q 009534 294 KHLNVLTITLHSFAALQRLLTYPSLQSIVSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEV 373 (532)
Q Consensus 294 ~~L~~L~i~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~ 373 (532)
++++.|+++-.. ++.++.. ....+++|++|+|+++.-++.++...+.++++|..+.+.++..+..++.+...
T Consensus 30 ~~l~~L~Ls~N~---i~~i~~~--~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~--- 101 (350)
T 4ay9_X 30 RNAIELRFVLTK---LRVIQKG--AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQ--- 101 (350)
T ss_dssp TTCSEEEEESCC---CSEECTT--SSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBC---
T ss_pred CCCCEEEccCCc---CCCcCHH--HHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhh---
Confidence 467777754222 2233221 12235668888888776566676666677777777766666777777655544
Q ss_pred ccccccCCCCCccEEEEeCCccccCCch--hcCCCcceeeeccccccccccccccccCcC------------cccCcccc
Q 009534 374 KRIRETHGFFSLHKVSIWGSKLRHVTWL--ILAPNLKLIQMYDCRCLEEIISLEKLGEVP------------SEEMQNLI 439 (532)
Q Consensus 374 ~~~~~~~~l~~L~~L~l~~c~L~~l~~l--~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~------------~~~~~~~~ 439 (532)
.+++|++|++++|+++.++.. ....++..|++.++..+..++...-..... ..-+....
T Consensus 102 -------~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f 174 (350)
T 4ay9_X 102 -------NLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF 174 (350)
T ss_dssp -------CCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS
T ss_pred -------hccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhc
Confidence 688888888888877776643 334456666776666666554321100000 00111334
Q ss_pred cccccceeeccccccccccCCCC-cCCCCccEEeecCCCCCCCCCCCCCCCCCceeEEecc
Q 009534 440 PFARLERLSLGGLENLRSIYPRA-LPFPHLKELHVTLCPKLKKLPFDCTSGHERKLIIKGQ 499 (532)
Q Consensus 440 ~~~~L~~L~l~~~~~L~~i~~~~-~~~p~L~~L~i~~C~~L~~lp~~~~~~l~~L~~~~~~ 499 (532)
..++|+.|.+.++..++.+|... ..+++|+.|+++++ +++.+|.+....+++|+..++.
T Consensus 175 ~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~~L~~L~~l~~~ 234 (350)
T 4ay9_X 175 NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARSTY 234 (350)
T ss_dssp TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSSCTTCCEEECTTCT
T ss_pred cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhhhccchHhhhccCC
Confidence 45788999998888899998754 57899999999987 7999988665556777666553
No 49
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.97 E-value=3.5e-09 Score=109.98 Aligned_cols=105 Identities=20% Similarity=0.179 Sum_probs=72.8
Q ss_pred cCCCCCccEEEEeCCccccCC--chhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeecccccccc
Q 009534 379 THGFFSLHKVSIWGSKLRHVT--WLILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLR 456 (532)
Q Consensus 379 ~~~l~~L~~L~l~~c~L~~l~--~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~ 456 (532)
...+++|++|++++|.+..++ .+..+++|+.|++++|. +..++. ..+..+++|++|+++++. +.
T Consensus 295 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~------------~~~~~l~~L~~L~Ls~N~-l~ 360 (455)
T 3v47_A 295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF-LGSIDS------------RMFENLDKLEVLDLSYNH-IR 360 (455)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECG------------GGGTTCTTCCEEECCSSC-CC
T ss_pred cccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCc-cCCcCh------------hHhcCcccCCEEECCCCc-cc
Confidence 345677777777777666643 36677777777777664 444432 267788999999999874 55
Q ss_pred cc-CCCCcCCCCccEEeecCCCCCCCCCCCCCCCCCceeEEec
Q 009534 457 SI-YPRALPFPHLKELHVTLCPKLKKLPFDCTSGHERKLIIKG 498 (532)
Q Consensus 457 ~i-~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~l~~L~~~~~ 498 (532)
.+ |.....+++|+.|++++| +++.+|......+++|+..+.
T Consensus 361 ~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l 402 (455)
T 3v47_A 361 ALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWL 402 (455)
T ss_dssp EECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEEC
T ss_pred ccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEc
Confidence 66 556778999999999996 677888754333455555543
No 50
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.97 E-value=3.6e-09 Score=105.10 Aligned_cols=44 Identities=11% Similarity=0.070 Sum_probs=22.3
Q ss_pred cccccccceeeccccccccccCCCCcCCCCccEEeecCCCCCCCCC
Q 009534 438 LIPFARLERLSLGGLENLRSIYPRALPFPHLKELHVTLCPKLKKLP 483 (532)
Q Consensus 438 ~~~~~~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp 483 (532)
+..+++|++|+++++ .+..+|.....+++|+.|++++| +++.+|
T Consensus 236 ~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~ 279 (330)
T 1xku_A 236 LANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIG 279 (330)
T ss_dssp GGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCC
T ss_pred ccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCC-cCCccC
Confidence 444555555555554 34455554555555555555554 244444
No 51
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.97 E-value=1.4e-09 Score=121.14 Aligned_cols=157 Identities=11% Similarity=0.082 Sum_probs=108.6
Q ss_pred CCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCCc-hh
Q 009534 324 NTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTW-LI 402 (532)
Q Consensus 324 ~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~-l~ 402 (532)
+|+.|++++|. +..+|...+..+++|+.|+++++ .+..+|..... ...+...++++|++|+|++|+++.+|. +.
T Consensus 674 ~L~~L~Ls~N~-L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~---~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~ 748 (876)
T 4ecn_A 674 NASTVTLSYNE-IQKFPTELFATGSPISTIILSNN-LMTSIPENSLK---PKDGNYKNTYLLTTIDLRFNKLTSLSDDFR 748 (876)
T ss_dssp CEEEEECCSSC-CCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSS---CTTSCCTTGGGCCEEECCSSCCCCCCGGGS
T ss_pred CcCEEEccCCc-CCccCHHHHccCCCCCEEECCCC-cCCccChHHhc---cccccccccCCccEEECCCCCCccchHHhh
Confidence 56677777654 55666554456777888888776 45556554332 000112234589999999998888876 44
Q ss_pred --cCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccc------cccccccCCCCcCCCCccEEeec
Q 009534 403 --LAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGG------LENLRSIYPRALPFPHLKELHVT 474 (532)
Q Consensus 403 --~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~L~~i~~~~~~~p~L~~L~i~ 474 (532)
.+++|+.|+|++|. +..++. .+..+++|+.|++++ +.-...+|..+..+++|+.|+++
T Consensus 749 ~~~l~~L~~L~Ls~N~-L~~lp~-------------~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls 814 (876)
T 4ecn_A 749 ATTLPYLSNMDVSYNC-FSSFPT-------------QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIG 814 (876)
T ss_dssp TTTCTTCCEEECCSSC-CSSCCC-------------GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECC
T ss_pred hccCCCcCEEEeCCCC-CCccch-------------hhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECC
Confidence 78999999998764 566665 778899999999976 33355677778889999999999
Q ss_pred CCCCCCCCCCCCCCCCCceeEEecchhhh
Q 009534 475 LCPKLKKLPFDCTSGHERKLIIKGQEEWW 503 (532)
Q Consensus 475 ~C~~L~~lp~~~~~~l~~L~~~~~~~~w~ 503 (532)
+|.- ..+|.... ++|+..+...+.+
T Consensus 815 ~N~L-~~Ip~~l~---~~L~~LdLs~N~l 839 (876)
T 4ecn_A 815 SNDI-RKVDEKLT---PQLYILDIADNPN 839 (876)
T ss_dssp SSCC-CBCCSCCC---SSSCEEECCSCTT
T ss_pred CCCC-CccCHhhc---CCCCEEECCCCCC
Confidence 9865 99998755 3455555544433
No 52
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.96 E-value=2e-09 Score=116.13 Aligned_cols=77 Identities=29% Similarity=0.295 Sum_probs=35.3
Q ss_pred cCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCCchh
Q 009534 323 SNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTWLI 402 (532)
Q Consensus 323 ~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~l~ 402 (532)
++|++|+++++. +..+|...+.++++|++|+++++ .+..++.... ..+++|++|++++|.+..++ +.
T Consensus 123 ~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~----------~~l~~L~~L~L~~N~l~~~~-~~ 189 (597)
T 3oja_B 123 PLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTF----------QATTSLQNLQLSSNRLTHVD-LS 189 (597)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTT----------TTCTTCCEEECTTSCCSBCC-GG
T ss_pred CCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhh----------hcCCcCcEEECcCCCCCCcC-hh
Confidence 445555555432 44444443344455555555544 2332322221 24566666666666555543 33
Q ss_pred cCCCcceeee
Q 009534 403 LAPNLKLIQM 412 (532)
Q Consensus 403 ~l~~L~~L~l 412 (532)
.+++|+.|++
T Consensus 190 ~l~~L~~L~l 199 (597)
T 3oja_B 190 LIPSLFHANV 199 (597)
T ss_dssp GCTTCSEEEC
T ss_pred hhhhhhhhhc
Confidence 4444444433
No 53
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.95 E-value=1.7e-09 Score=117.42 Aligned_cols=159 Identities=14% Similarity=0.118 Sum_probs=103.1
Q ss_pred CCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCCc-hh
Q 009534 324 NTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTW-LI 402 (532)
Q Consensus 324 ~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~-l~ 402 (532)
+|+.|+++++. +..+|...+..+++|+.|+++++ .+..+|..... ...+....+++|++|++++|+++.+|. +.
T Consensus 434 ~L~~L~Ls~N~-l~~lp~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~---~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~ 508 (636)
T 4eco_A 434 NVSSINLSNNQ-ISKFPKELFSTGSPLSSINLMGN-MLTEIPKNSLK---DENENFKNTYLLTSIDLRFNKLTKLSDDFR 508 (636)
T ss_dssp CEEEEECCSSC-CCSCCTHHHHTTCCCSEEECCSS-CCSBCCSSSSE---ETTEECTTGGGCCEEECCSSCCCBCCGGGS
T ss_pred CCCEEECcCCc-cCcCCHHHHccCCCCCEEECCCC-CCCCcCHHHhc---cccccccccCCccEEECcCCcCCccChhhh
Confidence 46666666643 45555543445666777777665 34445543322 000011223488899998887778775 43
Q ss_pred --cCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccc------cccccccCCCCcCCCCccEEeec
Q 009534 403 --LAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGG------LENLRSIYPRALPFPHLKELHVT 474 (532)
Q Consensus 403 --~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~L~~i~~~~~~~p~L~~L~i~ 474 (532)
.+++|+.|+++++. +..++. .+..+++|+.|++++ +.-...+|..+..+++|+.|+++
T Consensus 509 ~~~l~~L~~L~Ls~N~-l~~ip~-------------~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls 574 (636)
T 4eco_A 509 ATTLPYLVGIDLSYNS-FSKFPT-------------QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIG 574 (636)
T ss_dssp TTTCTTCCEEECCSSC-CSSCCC-------------GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECC
T ss_pred hccCCCcCEEECCCCC-CCCcCh-------------hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECC
Confidence 78889999998765 555655 777889999999954 44456677778889999999999
Q ss_pred CCCCCCCCCCCCCCCCCceeEEecchhhhhh
Q 009534 475 LCPKLKKLPFDCTSGHERKLIIKGQEEWWNN 505 (532)
Q Consensus 475 ~C~~L~~lp~~~~~~l~~L~~~~~~~~w~~~ 505 (532)
+|.- ..+|.... +.|+..+...+.+..
T Consensus 575 ~N~l-~~ip~~~~---~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 575 SNDI-RKVNEKIT---PNISVLDIKDNPNIS 601 (636)
T ss_dssp SSCC-CBCCSCCC---TTCCEEECCSCTTCE
T ss_pred CCcC-CccCHhHh---CcCCEEECcCCCCcc
Confidence 9865 88888654 455555555544443
No 54
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.95 E-value=2.1e-09 Score=105.92 Aligned_cols=152 Identities=13% Similarity=0.081 Sum_probs=87.7
Q ss_pred cCCCeEEEecCCCCCccccccccccccccceeeccccCccee--eecccCCccccccccCCCCCccEEEEeCCccccCCc
Q 009534 323 SNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEM--EIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTW 400 (532)
Q Consensus 323 ~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l--~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~ 400 (532)
++|++|+++++. +..++...+..+++|+.|+++++.-...+ +.... ...+++|++|++++|+++.++.
T Consensus 149 ~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~---------~~~l~~L~~L~L~~N~l~~~~~ 218 (312)
T 1wwl_A 149 PGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC---------PLKFPTLQVLALRNAGMETPSG 218 (312)
T ss_dssp TTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC---------TTSCTTCCEEECTTSCCCCHHH
T ss_pred CCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH---------hccCCCCCEEECCCCcCcchHH
Confidence 457777776644 55555444666667777777665422211 11110 1246777777777776664321
Q ss_pred -----hhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccccCCCCcCCCCccEEeecC
Q 009534 401 -----LILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIYPRALPFPHLKELHVTL 475 (532)
Q Consensus 401 -----l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~ 475 (532)
+..+++|+.|+++++. +...++ ...+..+++|++|+++++ .++.+|.... ++|+.|++++
T Consensus 219 ~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-----------~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~ 283 (312)
T 1wwl_A 219 VCSALAAARVQLQGLDLSHNS-LRDAAG-----------APSCDWPSQLNSLNLSFT-GLKQVPKGLP--AKLSVLDLSY 283 (312)
T ss_dssp HHHHHHHTTCCCSEEECTTSC-CCSSCC-----------CSCCCCCTTCCEEECTTS-CCSSCCSSCC--SEEEEEECCS
T ss_pred HHHHHHhcCCCCCEEECCCCc-CCcccc-----------hhhhhhcCCCCEEECCCC-ccChhhhhcc--CCceEEECCC
Confidence 2356777777776654 333321 013444677888888775 4667766554 7788888877
Q ss_pred CCCCCCCCCCCCCCCCceeEEecchhh
Q 009534 476 CPKLKKLPFDCTSGHERKLIIKGQEEW 502 (532)
Q Consensus 476 C~~L~~lp~~~~~~l~~L~~~~~~~~w 502 (532)
+ +++.+|. .. .++.|+..+...+.
T Consensus 284 N-~l~~~p~-~~-~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 284 N-RLDRNPS-PD-ELPQVGNLSLKGNP 307 (312)
T ss_dssp S-CCCSCCC-TT-TSCEEEEEECTTCT
T ss_pred C-CCCCChh-Hh-hCCCCCEEeccCCC
Confidence 6 5666665 22 24667766665443
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.95 E-value=3.3e-10 Score=113.79 Aligned_cols=39 Identities=10% Similarity=-0.060 Sum_probs=18.2
Q ss_pred ccccccccceeeccccccccccCCCC-cCCCCccEEeecCC
Q 009534 437 NLIPFARLERLSLGGLENLRSIYPRA-LPFPHLKELHVTLC 476 (532)
Q Consensus 437 ~~~~~~~L~~L~l~~~~~L~~i~~~~-~~~p~L~~L~i~~C 476 (532)
.+..+++|++|++.++. +..++... ..+++|+.|++++|
T Consensus 193 ~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n 232 (353)
T 2z80_A 193 SLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDT 232 (353)
T ss_dssp TTTTCSEEEEEEEECSC-STTHHHHHHHHTTTEEEEEEESC
T ss_pred HHhccccCCeecCCCCc-cccchhhhhhhcccccEEECCCC
Confidence 44445555555555432 33333211 12455666666554
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.94 E-value=7.9e-10 Score=108.59 Aligned_cols=150 Identities=15% Similarity=0.091 Sum_probs=86.1
Q ss_pred cCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCCc--
Q 009534 323 SNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTW-- 400 (532)
Q Consensus 323 ~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~-- 400 (532)
++|++|+++++. +..+|.. +..+++|+.|+++++ .+..++. ......+++|++|++++|.+...+.
T Consensus 78 ~~L~~L~Ls~n~-i~~l~~~-~~~l~~L~~L~l~~n-~l~~~~~---------~~~~~~l~~L~~L~l~~n~l~~~~~~~ 145 (306)
T 2z66_A 78 TSLKYLDLSFNG-VITMSSN-FLGLEQLEHLDFQHS-NLKQMSE---------FSVFLSLRNLIYLDISHTHTRVAFNGI 145 (306)
T ss_dssp SCCCEEECCSCS-EEEEEEE-EETCTTCCEEECTTS-EEESSTT---------TTTTTTCTTCCEEECTTSCCEECSTTT
T ss_pred cccCEEECCCCc-cccChhh-cCCCCCCCEEECCCC-ccccccc---------chhhhhccCCCEEECCCCcCCccchhh
Confidence 445566665543 4444433 455556666666554 2222221 0112356777777777775554322
Q ss_pred hhcCCCcceeeeccccccc-cccccccccCcCcccCcccccccccceeecccccccccc-CCCCcCCCCccEEeecCCCC
Q 009534 401 LILAPNLKLIQMYDCRCLE-EIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSI-YPRALPFPHLKELHVTLCPK 478 (532)
Q Consensus 401 l~~l~~L~~L~l~~c~~l~-~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i-~~~~~~~p~L~~L~i~~C~~ 478 (532)
+..+++|++|+++++.-.. .++. .+..+++|++|+++++ .+..+ +.....+++|+.|++++|.
T Consensus 146 ~~~l~~L~~L~l~~n~l~~~~~~~-------------~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~- 210 (306)
T 2z66_A 146 FNGLSSLEVLKMAGNSFQENFLPD-------------IFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNN- 210 (306)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECS-------------CCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-
T ss_pred cccCcCCCEEECCCCccccccchh-------------HHhhCcCCCEEECCCC-CcCCcCHHHhcCCCCCCEEECCCCc-
Confidence 5667777777777664222 1232 6777888999998886 45566 4456678889999998874
Q ss_pred CCCCCCCCCCCCCceeEEecc
Q 009534 479 LKKLPFDCTSGHERKLIIKGQ 499 (532)
Q Consensus 479 L~~lp~~~~~~l~~L~~~~~~ 499 (532)
+..+|......+.+|+..+..
T Consensus 211 l~~~~~~~~~~l~~L~~L~L~ 231 (306)
T 2z66_A 211 FFSLDTFPYKCLNSLQVLDYS 231 (306)
T ss_dssp CSBCCSGGGTTCTTCCEEECT
T ss_pred cCccChhhccCcccCCEeECC
Confidence 555544222223555555544
No 57
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.94 E-value=1e-09 Score=108.11 Aligned_cols=152 Identities=18% Similarity=0.280 Sum_probs=114.2
Q ss_pred cCCccCceeeEEeccchhHHHhhcCCcccccccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccC
Q 009534 291 LGLKHLNVLTITLHSFAALQRLLTYPSLQSIVSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAG 370 (532)
Q Consensus 291 ~~L~~L~~L~i~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~ 370 (532)
..+++|+.|++ .++ .+..++. ...+++|++|++++|. +..++. +..+++|+.|+++++. +..++.
T Consensus 38 ~~l~~L~~L~l--~~~-~i~~l~~----~~~l~~L~~L~L~~n~-i~~~~~--~~~l~~L~~L~L~~n~-l~~~~~---- 102 (308)
T 1h6u_A 38 ADLDGITTLSA--FGT-GVTTIEG----VQYLNNLIGLELKDNQ-ITDLAP--LKNLTKITELELSGNP-LKNVSA---- 102 (308)
T ss_dssp HHHHTCCEEEC--TTS-CCCCCTT----GGGCTTCCEEECCSSC-CCCCGG--GTTCCSCCEEECCSCC-CSCCGG----
T ss_pred HHcCCcCEEEe--eCC-CccCchh----hhccCCCCEEEccCCc-CCCChh--HccCCCCCEEEccCCc-CCCchh----
Confidence 34667778874 333 1222321 2235789999999974 777775 8889999999999974 665532
Q ss_pred CccccccccCCCCCccEEEEeCCccccCCchhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeecc
Q 009534 371 GEVKRIRETHGFFSLHKVSIWGSKLRHVTWLILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLG 450 (532)
Q Consensus 371 ~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 450 (532)
...+++|++|++++|.++.++.+..+++|+.|++++|. +..++ .+..+++|+.|+++
T Consensus 103 --------~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~-l~~~~--------------~l~~l~~L~~L~l~ 159 (308)
T 1h6u_A 103 --------IAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQ-ITNIS--------------PLAGLTNLQYLSIG 159 (308)
T ss_dssp --------GTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSC-CCCCG--------------GGGGCTTCCEEECC
T ss_pred --------hcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCc-cCcCc--------------cccCCCCccEEEcc
Confidence 23689999999999999998889999999999998874 55443 36678999999999
Q ss_pred ccccccccCCCCcCCCCccEEeecCCCCCCCCC
Q 009534 451 GLENLRSIYPRALPFPHLKELHVTLCPKLKKLP 483 (532)
Q Consensus 451 ~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp 483 (532)
++ .+..++. ...+++|+.|++++| ++..+|
T Consensus 160 ~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~ 189 (308)
T 1h6u_A 160 NA-QVSDLTP-LANLSKLTTLKADDN-KISDIS 189 (308)
T ss_dssp SS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCG
T ss_pred CC-cCCCChh-hcCCCCCCEEECCCC-ccCcCh
Confidence 97 5777765 678999999999987 344443
No 58
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.93 E-value=5.7e-09 Score=98.01 Aligned_cols=146 Identities=12% Similarity=0.097 Sum_probs=112.5
Q ss_pred CCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCCc--hh
Q 009534 325 TPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTW--LI 402 (532)
Q Consensus 325 L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~--l~ 402 (532)
.+.++.++ ..+..+|.. ++ ++|+.|+++++ .+..++..... .+++|++|++++|++..++. +.
T Consensus 21 ~~~v~c~~-~~l~~ip~~-~~--~~L~~L~Ls~n-~i~~~~~~~~~----------~l~~L~~L~L~~N~l~~i~~~~~~ 85 (229)
T 3e6j_A 21 GTTVDCRS-KRHASVPAG-IP--TNAQILYLHDN-QITKLEPGVFD----------SLINLKELYLGSNQLGALPVGVFD 85 (229)
T ss_dssp TTEEECTT-SCCSSCCSC-CC--TTCSEEECCSS-CCCCCCTTTTT----------TCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCEeEccC-CCcCccCCC-CC--CCCCEEEcCCC-ccCccCHHHhh----------CccCCcEEECCCCCCCCcChhhcc
Confidence 45666665 457888864 43 69999999996 56655444433 68999999999999888875 68
Q ss_pred cCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccccCCCCcCCCCccEEeecCCCCCCCC
Q 009534 403 LAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIYPRALPFPHLKELHVTLCPKLKKL 482 (532)
Q Consensus 403 ~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~l 482 (532)
.+++|+.|+++++ .+..++. ..+..+++|+.|+++++ +++.+|.....+++|+.|+++++ +++.+
T Consensus 86 ~l~~L~~L~Ls~N-~l~~l~~------------~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N-~l~~~ 150 (229)
T 3e6j_A 86 SLTQLTVLDLGTN-QLTVLPS------------AVFDRLVHLKELFMCCN-KLTELPRGIERLTHLTHLALDQN-QLKSI 150 (229)
T ss_dssp TCTTCCEEECCSS-CCCCCCT------------TTTTTCTTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCSS-CCCCC
T ss_pred cCCCcCEEECCCC-cCCccCh------------hHhCcchhhCeEeccCC-cccccCcccccCCCCCEEECCCC-cCCcc
Confidence 8999999999886 4777755 24678999999999986 68899988889999999999997 78888
Q ss_pred CCCCCCCCCceeEEecch
Q 009534 483 PFDCTSGHERKLIIKGQE 500 (532)
Q Consensus 483 p~~~~~~l~~L~~~~~~~ 500 (532)
|......+.+|+.++...
T Consensus 151 ~~~~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 151 PHGAFDRLSSLTHAYLFG 168 (229)
T ss_dssp CTTTTTTCTTCCEEECTT
T ss_pred CHHHHhCCCCCCEEEeeC
Confidence 865444346666665443
No 59
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.93 E-value=3.8e-09 Score=106.02 Aligned_cols=137 Identities=18% Similarity=0.232 Sum_probs=91.4
Q ss_pred ccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCCc-
Q 009534 322 VSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTW- 400 (532)
Q Consensus 322 l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~- 400 (532)
+++|++|+++++ .+..++...+..+++|++|+++++ .+..++..... .+++|++|++++|.++.+|.
T Consensus 75 l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~----------~l~~L~~L~L~~n~l~~l~~~ 142 (353)
T 2z80_A 75 CVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFK----------PLSSLTFLNLLGNPYKTLGET 142 (353)
T ss_dssp CTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHT----------TCTTCSEEECTTCCCSSSCSS
T ss_pred CCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhC----------CCccCCEEECCCCCCcccCch
Confidence 466777777775 366665555677777777777775 45555544322 57778888887777777654
Q ss_pred --hhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeecccccccccc-CCCCcCCCCccEEeecCCC
Q 009534 401 --LILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSI-YPRALPFPHLKELHVTLCP 477 (532)
Q Consensus 401 --l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i-~~~~~~~p~L~~L~i~~C~ 477 (532)
+..+++|++|++++|..+..++. ..+..+++|++|++.++. +..+ +.....+++|+.|++++|.
T Consensus 143 ~~~~~l~~L~~L~l~~n~~~~~~~~------------~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~ 209 (353)
T 2z80_A 143 SLFSHLTKLQILRVGNMDTFTKIQR------------KDFAGLTFLEELEIDASD-LQSYEPKSLKSIQNVSHLILHMKQ 209 (353)
T ss_dssp CSCTTCTTCCEEEEEESSSCCEECT------------TTTTTCCEEEEEEEEETT-CCEECTTTTTTCSEEEEEEEECSC
T ss_pred hhhccCCCCcEEECCCCccccccCH------------HHccCCCCCCEEECCCCC-cCccCHHHHhccccCCeecCCCCc
Confidence 56777888888877765665543 256667788888887764 4444 4556677788888887765
Q ss_pred CCCCCCC
Q 009534 478 KLKKLPF 484 (532)
Q Consensus 478 ~L~~lp~ 484 (532)
+..+|.
T Consensus 210 -l~~~~~ 215 (353)
T 2z80_A 210 -HILLLE 215 (353)
T ss_dssp -STTHHH
T ss_pred -cccchh
Confidence 455553
No 60
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.93 E-value=1e-09 Score=117.34 Aligned_cols=103 Identities=15% Similarity=0.076 Sum_probs=71.4
Q ss_pred CCCCCccEEEEeCCccccC-C-chhcCCCcceeeecccccc-ccccccccccCcCcccCcccccccccceeecccccccc
Q 009534 380 HGFFSLHKVSIWGSKLRHV-T-WLILAPNLKLIQMYDCRCL-EEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLR 456 (532)
Q Consensus 380 ~~l~~L~~L~l~~c~L~~l-~-~l~~l~~L~~L~l~~c~~l-~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~ 456 (532)
..+++|++|++++|.+... | .+..+++|+.|++++|.-. ..++. .+..+++|+.|++++|. +.
T Consensus 418 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~-------------~~~~l~~L~~L~l~~n~-l~ 483 (570)
T 2z63_A 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD-------------IFTELRNLTFLDLSQCQ-LE 483 (570)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS-------------CCTTCTTCCEEECTTSC-CC
T ss_pred hcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchh-------------hhhcccCCCEEECCCCc-cc
Confidence 4577788888887755553 2 2667788888888777633 13443 77889999999999874 55
Q ss_pred cc-CCCCcCCCCccEEeecCCCCCCCCCCCCCCCCCceeEEe
Q 009534 457 SI-YPRALPFPHLKELHVTLCPKLKKLPFDCTSGHERKLIIK 497 (532)
Q Consensus 457 ~i-~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~l~~L~~~~ 497 (532)
.+ |.....+++|+.|++++| ++..+|......+++|+..+
T Consensus 484 ~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~ 524 (570)
T 2z63_A 484 QLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIW 524 (570)
T ss_dssp EECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEE
T ss_pred cCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEE
Confidence 55 556778999999999998 67777654333335555554
No 61
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.92 E-value=2.9e-09 Score=105.08 Aligned_cols=195 Identities=13% Similarity=0.039 Sum_probs=106.7
Q ss_pred chhhhcCCccCceeeEEe-ccchhHHHhhcCCcccccccCCCeEEEecCCCCC-ccccccccccccccceeeccccCcce
Q 009534 286 LVEELLGLKHLNVLTITL-HSFAALQRLLTYPSLQSIVSNTPSLSLTNCRSLS-SLSVLTLASLRHLEALDMRYCKDLEE 363 (532)
Q Consensus 286 ~~~~l~~L~~L~~L~i~~-~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~-~l~~~~l~~l~~L~~L~i~~c~~L~~ 363 (532)
....+..+++|+.|+++- .... ..++ .....+++|++|+++++. +. .+|. .+..+++|++|+++++.-...
T Consensus 68 ~~~~l~~l~~L~~L~L~~~n~l~--~~~p---~~l~~l~~L~~L~Ls~n~-l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~ 140 (313)
T 1ogq_A 68 IPSSLANLPYLNFLYIGGINNLV--GPIP---PAIAKLTQLHYLYITHTN-VSGAIPD-FLSQIKTLVTLDFSYNALSGT 140 (313)
T ss_dssp CCGGGGGCTTCSEEEEEEETTEE--SCCC---GGGGGCTTCSEEEEEEEC-CEEECCG-GGGGCTTCCEEECCSSEEESC
T ss_pred cChhHhCCCCCCeeeCCCCCccc--ccCC---hhHhcCCCCCEEECcCCe-eCCcCCH-HHhCCCCCCEEeCCCCccCCc
Confidence 345667788888888541 1111 1121 122345668888888765 44 4444 377778888888877632222
Q ss_pred eeecccCCccccccccCCCCCccEEEEeCCccc-cCCc-hhcCC-CcceeeeccccccccccccccccC----------c
Q 009534 364 MEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLR-HVTW-LILAP-NLKLIQMYDCRCLEEIISLEKLGE----------V 430 (532)
Q Consensus 364 l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~-~l~~-l~~l~-~L~~L~l~~c~~l~~i~~~~~~~~----------~ 430 (532)
+|... ..+++|++|++++|.+. .+|. +..++ +|+.|+++++.-...++....... .
T Consensus 141 ~p~~~-----------~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l 209 (313)
T 1ogq_A 141 LPPSI-----------SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNML 209 (313)
T ss_dssp CCGGG-----------GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEE
T ss_pred CChHH-----------hcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcc
Confidence 33222 24666777777666555 3443 55555 666666665432212221100000 0
Q ss_pred CcccCcccccccccceeeccccccccccCCCCcCCCCccEEeecCCCCCCCCCCCCCCCCCceeEEecch
Q 009534 431 PSEEMQNLIPFARLERLSLGGLENLRSIYPRALPFPHLKELHVTLCPKLKKLPFDCTSGHERKLIIKGQE 500 (532)
Q Consensus 431 ~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~l~~L~~~~~~~ 500 (532)
....+..+..+++|+.|+++++. +...+.....+++|++|++++|.--..+|...... +.|+..+...
T Consensus 210 ~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~Ls~ 277 (313)
T 1ogq_A 210 EGDASVLFGSDKNTQKIHLAKNS-LAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQL-KFLHSLNVSF 277 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSE-ECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGC-TTCCEEECCS
T ss_pred cCcCCHHHhcCCCCCEEECCCCc-eeeecCcccccCCCCEEECcCCcccCcCChHHhcC-cCCCEEECcC
Confidence 00012356677888888888764 33333335667888888888886555677654443 5555555443
No 62
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.92 E-value=1.2e-09 Score=107.51 Aligned_cols=179 Identities=14% Similarity=0.110 Sum_probs=110.0
Q ss_pred cCCccCceeeEEeccchhHH-HhhcCCcccccccCCCeEEEecCCCCCccccccccccccccceeeccccCcce--eeec
Q 009534 291 LGLKHLNVLTITLHSFAALQ-RLLTYPSLQSIVSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEE--MEID 367 (532)
Q Consensus 291 ~~L~~L~~L~i~~~~~~~l~-~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~--l~~~ 367 (532)
..+++|+.|+++-....... .+... ... .+++|++|+++++. +..++...+..+++|++|+++++.-... ++..
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~-~~~-~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 190 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAEL-QQW-LKPGLKVLSIAQAH-SPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAA 190 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHH-HTT-BCSCCCEEEEECCS-SCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTT
T ss_pred ccCCCCCEEEeecccccchhhhhHHH-Hhh-hccCCCEEEeeCCC-cchhhHHHhccCCCCCEEECCCCCCccchhhhHH
Confidence 56777888886533222100 00000 001 24668888888865 6666666677888888888888743321 2211
Q ss_pred ccCCccccccccCCCCCccEEEEeCCccccCCc-----hhcCCCcceeeeccccccccc-cccccccCcCcccCcccccc
Q 009534 368 YAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTW-----LILAPNLKLIQMYDCRCLEEI-ISLEKLGEVPSEEMQNLIPF 441 (532)
Q Consensus 368 ~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~-----l~~l~~L~~L~l~~c~~l~~i-~~~~~~~~~~~~~~~~~~~~ 441 (532)
.. ...+++|++|++++|+++.++. +..+++|++|+++++. +..+ +. .+..+
T Consensus 191 ~~---------~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~-------------~~~~~ 247 (310)
T 4glp_A 191 LC---------PHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNS-LRATVNP-------------SAPRC 247 (310)
T ss_dssp SC---------TTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCS-------------CCSSC
T ss_pred Hh---------hhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCC-CCccchh-------------hHHhc
Confidence 11 1257888888888887776554 3567888888888765 4444 33 33333
Q ss_pred ---cccceeeccccccccccCCCCcCCCCccEEeecCCCCCCCCCCCCCCCCCceeEEecchh
Q 009534 442 ---ARLERLSLGGLENLRSIYPRALPFPHLKELHVTLCPKLKKLPFDCTSGHERKLIIKGQEE 501 (532)
Q Consensus 442 ---~~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~l~~L~~~~~~~~ 501 (532)
++|++|+++++ .++.+|.... ++|+.|++++| +++.+|. .. .++.|+..+...+
T Consensus 248 ~~~~~L~~L~Ls~N-~l~~lp~~~~--~~L~~L~Ls~N-~l~~~~~-~~-~l~~L~~L~L~~N 304 (310)
T 4glp_A 248 MWSSALNSLNLSFA-GLEQVPKGLP--AKLRVLDLSSN-RLNRAPQ-PD-ELPEVDNLTLDGN 304 (310)
T ss_dssp CCCTTCCCEECCSS-CCCSCCSCCC--SCCSCEECCSC-CCCSCCC-TT-SCCCCSCEECSST
T ss_pred cCcCcCCEEECCCC-CCCchhhhhc--CCCCEEECCCC-cCCCCch-hh-hCCCccEEECcCC
Confidence 78889998875 5677776553 78899998886 5666665 22 2355555555443
No 63
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.91 E-value=5.5e-09 Score=112.72 Aligned_cols=170 Identities=13% Similarity=0.057 Sum_probs=79.7
Q ss_pred hcCCccCceeeEEeccchhHHHhhcCCcccccccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeeccc
Q 009534 290 LLGLKHLNVLTITLHSFAALQRLLTYPSLQSIVSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYA 369 (532)
Q Consensus 290 l~~L~~L~~L~i~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~ 369 (532)
+..+++|+.|+++ .+ .+..++.. ...+++|++|+++++. +..++...+..+++|+.|+++++.....++....
T Consensus 274 ~~~l~~L~~L~l~--~n-~l~~lp~~---l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 346 (606)
T 3t6q_A 274 FHCFSGLQELDLT--AT-HLSELPSG---LVGLSTLKKLVLSANK-FENLCQISASNFPSLTHLSIKGNTKRLELGTGCL 346 (606)
T ss_dssp TTTCTTCSEEECT--TS-CCSCCCSS---CCSCTTCCEEECTTCC-CSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTT
T ss_pred hccccCCCEEecc--CC-ccCCCChh---hcccccCCEEECccCC-cCcCchhhhhccCcCCEEECCCCCcccccchhhh
Confidence 5566777777733 33 12233322 2234557777777754 5555444466667777777766643333333322
Q ss_pred CCccccccccCCCCCccEEEEeCCccccCC----chhcCCCcceeeecccccccccccccccc------------CcCcc
Q 009534 370 GGEVKRIRETHGFFSLHKVSIWGSKLRHVT----WLILAPNLKLIQMYDCRCLEEIISLEKLG------------EVPSE 433 (532)
Q Consensus 370 ~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~----~l~~l~~L~~L~l~~c~~l~~i~~~~~~~------------~~~~~ 433 (532)
. .+++|++|++++|.+..++ .+..+++|++|++++|. +..++...-.. .....
T Consensus 347 ~----------~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 415 (606)
T 3t6q_A 347 E----------NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKECPQLELLDLAFTRLKVK 415 (606)
T ss_dssp T----------TCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS-CEEECTTTTTTCTTCSEEECTTCCEECC
T ss_pred h----------ccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc-CCcCCHHHhcCCccCCeEECCCCcCCCc
Confidence 2 3455555555555443321 14445555555554433 22221100000 00000
Q ss_pred -cCcccccccccceeeccccccccccCCCCcCCCCccEEeecCCC
Q 009534 434 -EMQNLIPFARLERLSLGGLENLRSIYPRALPFPHLKELHVTLCP 477 (532)
Q Consensus 434 -~~~~~~~~~~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~ 477 (532)
.+..+..+++|+.|+++++.--...+.....+++|+.|++++|+
T Consensus 416 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 460 (606)
T 3t6q_A 416 DAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460 (606)
T ss_dssp TTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCB
T ss_pred ccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCC
Confidence 00124556666666666654222223344556666666666664
No 64
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.90 E-value=6.9e-09 Score=96.80 Aligned_cols=129 Identities=16% Similarity=0.276 Sum_probs=96.3
Q ss_pred cCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCCc--
Q 009534 323 SNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTW-- 400 (532)
Q Consensus 323 ~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~-- 400 (532)
++|+.|+++++ .+..++...+..+++|+.|+++++ .+..+...... .+++|++|++++|.++.+|.
T Consensus 32 ~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~----------~l~~L~~L~Ls~N~l~~l~~~~ 99 (220)
T 2v9t_B 32 ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQ----------GLRSLNSLVLYGNKITELPKSL 99 (220)
T ss_dssp TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTT----------TCSSCCEEECCSSCCCCCCTTT
T ss_pred cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhh----------CCcCCCEEECCCCcCCccCHhH
Confidence 35888998885 478887766888889999999886 56656444433 68889999999888888775
Q ss_pred hhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccccCCC-CcCCCCccEEeecCCC
Q 009534 401 LILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIYPR-ALPFPHLKELHVTLCP 477 (532)
Q Consensus 401 l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~~-~~~~p~L~~L~i~~C~ 477 (532)
+..+++|+.|+++++. +..++. ..+..+++|+.|+++++ .++.++.. ...+++|+.|++.+.+
T Consensus 100 f~~l~~L~~L~L~~N~-l~~~~~------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 100 FEGLFSLQLLLLNANK-INCLRV------------DAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCT------------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCCCCCCEEECCCCC-CCEeCH------------HHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCC
Confidence 5778899999997754 555543 26777889999999885 46677653 5568888888887753
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.90 E-value=2.3e-09 Score=106.02 Aligned_cols=132 Identities=13% Similarity=0.094 Sum_probs=87.8
Q ss_pred ccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCCch
Q 009534 322 VSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTWL 401 (532)
Q Consensus 322 l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~l 401 (532)
+++|++|+++++. +..++...+..+++|+.|+++++ .+..++..... ..+++|++|++++|.++.++..
T Consensus 119 ~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~---------~~l~~L~~L~L~~N~l~~~~~~ 187 (317)
T 3o53_A 119 GQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELA---------ASSDTLEHLNLQYNFIYDVKGQ 187 (317)
T ss_dssp CSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTS-CCCEEEGGGGG---------GGTTTCCEEECTTSCCCEEECC
T ss_pred cCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCC-CCCcccHHHHh---------hccCcCCEEECCCCcCcccccc
Confidence 3445566665543 45554444566667777777765 34444332211 2467888888888877777666
Q ss_pred hcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccccCCCCcCCCCccEEeecCCCCC
Q 009534 402 ILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIYPRALPFPHLKELHVTLCPKL 479 (532)
Q Consensus 402 ~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L 479 (532)
..+++|++|+++++. +..++. .+..+++|+.|+++++ .++.+|.....+++|+.|++++++-.
T Consensus 188 ~~l~~L~~L~Ls~N~-l~~l~~-------------~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 188 VVFAKLKTLDLSSNK-LAFMGP-------------EFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CCCTTCCEEECCSSC-CCEECG-------------GGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred cccccCCEEECCCCc-CCcchh-------------hhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCcc
Confidence 668888888887764 666655 5667788888888876 57777777777788888888877544
No 66
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.90 E-value=1.4e-09 Score=94.80 Aligned_cols=125 Identities=18% Similarity=0.208 Sum_probs=95.4
Q ss_pred cCCCeEEEecCCCCC--ccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCcccc-CC
Q 009534 323 SNTPSLSLTNCRSLS--SLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRH-VT 399 (532)
Q Consensus 323 ~~L~~L~l~~c~~l~--~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~-l~ 399 (532)
++|+.|++++|. +. .+|. .+..+++|+.|++++| .+..+ ... ..+++|++|++++|.+.. +|
T Consensus 17 ~~l~~L~l~~n~-l~~~~~~~-~~~~l~~L~~L~l~~n-~l~~~--~~~----------~~l~~L~~L~Ls~n~i~~~~~ 81 (149)
T 2je0_A 17 SDVKELVLDNSR-SNEGKLEG-LTDEFEELEFLSTINV-GLTSI--ANL----------PKLNKLKKLELSDNRVSGGLE 81 (149)
T ss_dssp GGCSEEECTTCB-CBTTBCCS-CCTTCTTCCEEECTTS-CCCCC--TTC----------CCCTTCCEEECCSSCCCSCTH
T ss_pred ccCeEEEccCCc-CChhHHHH-HHhhcCCCcEEECcCC-CCCCc--hhh----------hcCCCCCEEECCCCcccchHH
Confidence 459999999976 55 6665 3688899999999987 56655 222 368999999999998887 66
Q ss_pred c-hhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccccCC----CCcCCCCccEEeec
Q 009534 400 W-LILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIYP----RALPFPHLKELHVT 474 (532)
Q Consensus 400 ~-l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~----~~~~~p~L~~L~i~ 474 (532)
. +..+++|++|++++|. +..++. ...+..+++|++|+++++ .+..++. ....+|+|+.|+++
T Consensus 82 ~~~~~l~~L~~L~ls~N~-i~~~~~-----------~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 82 VLAEKCPNLTHLNLSGNK-IKDLST-----------IEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHHHHCTTCCEEECTTSC-CCSHHH-----------HGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred HHhhhCCCCCEEECCCCc-CCChHH-----------HHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 5 4569999999998875 666541 126788999999999997 5677765 35668899998876
Q ss_pred C
Q 009534 475 L 475 (532)
Q Consensus 475 ~ 475 (532)
+
T Consensus 149 d 149 (149)
T 2je0_A 149 D 149 (149)
T ss_dssp C
T ss_pred C
Confidence 4
No 67
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.89 E-value=2.3e-10 Score=113.93 Aligned_cols=129 Identities=24% Similarity=0.377 Sum_probs=63.7
Q ss_pred cCCCeEEEecCCCCCc--cccccccccccccceeeccccCcce--eeecccCCccccccccCCCC-CccEEEEeCC--cc
Q 009534 323 SNTPSLSLTNCRSLSS--LSVLTLASLRHLEALDMRYCKDLEE--MEIDYAGGEVKRIRETHGFF-SLHKVSIWGS--KL 395 (532)
Q Consensus 323 ~~L~~L~l~~c~~l~~--l~~~~l~~l~~L~~L~i~~c~~L~~--l~~~~~~~~~~~~~~~~~l~-~L~~L~l~~c--~L 395 (532)
++|++|++++|..++. ++.. +..+++|+.|++++|..+.. ++... ..++ +|++|++++| .+
T Consensus 142 ~~L~~L~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~-----------~~l~~~L~~L~l~~~~~~~ 209 (336)
T 2ast_B 142 SNLVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWCFDFTEKHVQVAV-----------AHVSETITQLNLSGYRKNL 209 (336)
T ss_dssp TTCSEEECTTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCCHHHHHHHH-----------HHSCTTCCEEECCSCGGGS
T ss_pred CCCCEEECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCcChHHHHHHH-----------HhcccCCCEEEeCCCcccC
Confidence 4455555555544442 2221 34455555555555533332 11111 1355 6666666666 23
Q ss_pred cc--CCc-hhcCCCcceeeecccccccc-ccccccccCcCcccCcccccccccceeeccccccccccCC-CCcCCCCccE
Q 009534 396 RH--VTW-LILAPNLKLIQMYDCRCLEE-IISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIYP-RALPFPHLKE 470 (532)
Q Consensus 396 ~~--l~~-l~~l~~L~~L~l~~c~~l~~-i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~-~~~~~p~L~~ 470 (532)
+. ++. +..+++|+.|++++|..+.. .+. .+..+++|++|++.+|..+..... ....+|+|+.
T Consensus 210 ~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-------------~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 276 (336)
T 2ast_B 210 QKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-------------EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKT 276 (336)
T ss_dssp CHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG-------------GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred CHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH-------------HHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCE
Confidence 21 222 44566666666666553332 222 455567777777776653322111 2345667777
Q ss_pred EeecCC
Q 009534 471 LHVTLC 476 (532)
Q Consensus 471 L~i~~C 476 (532)
|++++|
T Consensus 277 L~l~~~ 282 (336)
T 2ast_B 277 LQVFGI 282 (336)
T ss_dssp EECTTS
T ss_pred EeccCc
Confidence 777766
No 68
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.89 E-value=5.6e-10 Score=111.11 Aligned_cols=160 Identities=18% Similarity=0.219 Sum_probs=111.6
Q ss_pred hcCCccCceeeEEeccchhHHH-hhcCCcccccccCCCeEEEecCCCCCccccccccccccccceeeccccCcce--eee
Q 009534 290 LLGLKHLNVLTITLHSFAALQR-LLTYPSLQSIVSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEE--MEI 366 (532)
Q Consensus 290 l~~L~~L~~L~i~~~~~~~l~~-l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~--l~~ 366 (532)
+..+++|+.|+++ .+..... ++. ....+++|++|++++|. +.......+..+++|++|++++|..+.. ++.
T Consensus 89 ~~~~~~L~~L~L~--~~~l~~~~~~~---~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~ 162 (336)
T 2ast_B 89 HFSPFRVQHMDLS--NSVIEVSTLHG---ILSQCSKLQNLSLEGLR-LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT 162 (336)
T ss_dssp CCCCBCCCEEECT--TCEECHHHHHH---HHTTBCCCSEEECTTCB-CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH
T ss_pred hccCCCCCEEEcc--CCCcCHHHHHH---HHhhCCCCCEEeCcCcc-cCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHH
Confidence 4567889999844 4421111 222 12235779999999985 5543333477789999999999866663 222
Q ss_pred cccCCccccccccCCCCCccEEEEeCC-cccc--CCc-hhcCC-Ccceeeecccc-ccc--cccccccccCcCcccCccc
Q 009534 367 DYAGGEVKRIRETHGFFSLHKVSIWGS-KLRH--VTW-LILAP-NLKLIQMYDCR-CLE--EIISLEKLGEVPSEEMQNL 438 (532)
Q Consensus 367 ~~~~~~~~~~~~~~~l~~L~~L~l~~c-~L~~--l~~-l~~l~-~L~~L~l~~c~-~l~--~i~~~~~~~~~~~~~~~~~ 438 (532)
.. ..+++|++|++++| .++. ++. +..++ +|++|++++|. .+. .++. .+
T Consensus 163 ~~-----------~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~-------------~~ 218 (336)
T 2ast_B 163 LL-----------SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST-------------LV 218 (336)
T ss_dssp HH-----------HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH-------------HH
T ss_pred HH-----------hcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH-------------HH
Confidence 12 25889999999999 8886 333 77889 99999999886 342 3333 55
Q ss_pred ccccccceeecccccccc-ccCCCCcCCCCccEEeecCCCCC
Q 009534 439 IPFARLERLSLGGLENLR-SIYPRALPFPHLKELHVTLCPKL 479 (532)
Q Consensus 439 ~~~~~L~~L~l~~~~~L~-~i~~~~~~~p~L~~L~i~~C~~L 479 (532)
..+++|++|++++|..++ ..+..+..+++|+.|++++|..+
T Consensus 219 ~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 260 (336)
T 2ast_B 219 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI 260 (336)
T ss_dssp HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTC
T ss_pred hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCC
Confidence 678999999999987654 33445677899999999999744
No 69
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.89 E-value=5.1e-09 Score=108.91 Aligned_cols=83 Identities=12% Similarity=0.098 Sum_probs=46.2
Q ss_pred CCCccEEEEeCCccccCCchhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccccCCC
Q 009534 382 FFSLHKVSIWGSKLRHVTWLILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIYPR 461 (532)
Q Consensus 382 l~~L~~L~l~~c~L~~l~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~~ 461 (532)
+++|++|++++|.++.++ ++.+++|+.|++++|..+..+ .+..+++|+.|+++++ +++.+|
T Consensus 126 l~~L~~L~l~~N~l~~l~-l~~l~~L~~L~l~~n~~~~~~---------------~~~~l~~L~~L~ls~n-~l~~l~-- 186 (457)
T 3bz5_A 126 NPLLTYLNCARNTLTEID-VSHNTQLTELDCHLNKKITKL---------------DVTPQTQLTTLDCSFN-KITELD-- 186 (457)
T ss_dssp CTTCCEEECTTSCCSCCC-CTTCTTCCEEECTTCSCCCCC---------------CCTTCTTCCEEECCSS-CCCCCC--
T ss_pred CCcCCEEECCCCccceec-cccCCcCCEEECCCCCccccc---------------ccccCCcCCEEECCCC-ccceec--
Confidence 445555555555444443 444555555555544433333 3445677777777765 466665
Q ss_pred CcCCCCccEEeecCCCCCCCCCC
Q 009534 462 ALPFPHLKELHVTLCPKLKKLPF 484 (532)
Q Consensus 462 ~~~~p~L~~L~i~~C~~L~~lp~ 484 (532)
...+++|+.|++++| +++.+++
T Consensus 187 l~~l~~L~~L~l~~N-~l~~~~l 208 (457)
T 3bz5_A 187 VSQNKLLNRLNCDTN-NITKLDL 208 (457)
T ss_dssp CTTCTTCCEEECCSS-CCSCCCC
T ss_pred cccCCCCCEEECcCC-cCCeecc
Confidence 556777777777765 3444443
No 70
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.89 E-value=2.8e-09 Score=105.17 Aligned_cols=178 Identities=16% Similarity=0.097 Sum_probs=100.9
Q ss_pred chhhhcCCccCceeeEEeccchhHHHhhcCCcccccccCCCeEEEecCCCCC-ccccccccccccccceeeccccCccee
Q 009534 286 LVEELLGLKHLNVLTITLHSFAALQRLLTYPSLQSIVSNTPSLSLTNCRSLS-SLSVLTLASLRHLEALDMRYCKDLEEM 364 (532)
Q Consensus 286 ~~~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~-~l~~~~l~~l~~L~~L~i~~c~~L~~l 364 (532)
....+..+++|++|+++-.... ..++ .....+++|++|+++++. +. .+|.. +..+++|++|+++++.--..+
T Consensus 93 ~p~~l~~l~~L~~L~Ls~n~l~--~~~p---~~~~~l~~L~~L~Ls~N~-l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~ 165 (313)
T 1ogq_A 93 IPPAIAKLTQLHYLYITHTNVS--GAIP---DFLSQIKTLVTLDFSYNA-LSGTLPPS-ISSLPNLVGITFDGNRISGAI 165 (313)
T ss_dssp CCGGGGGCTTCSEEEEEEECCE--EECC---GGGGGCTTCCEEECCSSE-EESCCCGG-GGGCTTCCEEECCSSCCEEEC
T ss_pred CChhHhcCCCCCEEECcCCeeC--CcCC---HHHhCCCCCCEEeCCCCc-cCCcCChH-HhcCCCCCeEECcCCcccCcC
Confidence 4445666777777775422221 1111 112234557777776654 33 34432 566666777766665322123
Q ss_pred eecccCC--------------ccccccccCCCCCccEEEEeCCccccCC--chhcCCCcceeeecccccccccccccccc
Q 009534 365 EIDYAGG--------------EVKRIRETHGFFSLHKVSIWGSKLRHVT--WLILAPNLKLIQMYDCRCLEEIISLEKLG 428 (532)
Q Consensus 365 ~~~~~~~--------------~~~~~~~~~~l~~L~~L~l~~c~L~~l~--~l~~l~~L~~L~l~~c~~l~~i~~~~~~~ 428 (532)
|...... ++..+.....++ |++|++++|.+...+ .+..+++|+.|+++++. +...+.
T Consensus 166 p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~----- 238 (313)
T 1ogq_A 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS-LAFDLG----- 238 (313)
T ss_dssp CGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE-ECCBGG-----
T ss_pred CHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCc-eeeecC-----
Confidence 3222110 000111112233 666666666554422 15567777777776654 333333
Q ss_pred CcCcccCcccccccccceeeccccccccccCCCCcCCCCccEEeecCCCCCCCCCCC
Q 009534 429 EVPSEEMQNLIPFARLERLSLGGLENLRSIYPRALPFPHLKELHVTLCPKLKKLPFD 485 (532)
Q Consensus 429 ~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~ 485 (532)
.+..+++|++|+++++.--..+|..+..+++|+.|++++|+--..+|..
T Consensus 239 --------~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 239 --------KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp --------GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred --------cccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 4667899999999997644477777888999999999999765578875
No 71
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.88 E-value=4.9e-09 Score=105.13 Aligned_cols=190 Identities=14% Similarity=0.108 Sum_probs=122.4
Q ss_pred hhhcCCccCceeeEEeccchhHHHhhcCCcccccccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeec
Q 009534 288 EELLGLKHLNVLTITLHSFAALQRLLTYPSLQSIVSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEID 367 (532)
Q Consensus 288 ~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~ 367 (532)
+.+.++++|+.|+++ .+...+.++.. ....++++..+.+.+++.+..++...+..+++|++|++.++ .+..++..
T Consensus 48 ~~f~~l~~L~~L~Ls--~N~i~~~i~~~--~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n-~l~~~~~~ 122 (350)
T 4ay9_X 48 GAFSGFGDLEKIEIS--QNDVLEVIEAD--VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDV 122 (350)
T ss_dssp TSSTTCTTCCEEEEE--CCTTCCEECTT--SBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEE-CCSSCCCC
T ss_pred HHHcCCCCCCEEECc--CCCCCCccChh--HhhcchhhhhhhcccCCcccccCchhhhhcccccccccccc-ccccCCch
Confidence 346788899999955 33222222211 11223556666666666777776666777778888877765 33333321
Q ss_pred ccCCc---------------cccccccCCC-CCccEEEEeCCccccCCc-hhcCCCcceeeeccccccccccccccccCc
Q 009534 368 YAGGE---------------VKRIRETHGF-FSLHKVSIWGSKLRHVTW-LILAPNLKLIQMYDCRCLEEIISLEKLGEV 430 (532)
Q Consensus 368 ~~~~~---------------~~~~~~~~~l-~~L~~L~l~~c~L~~l~~-l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~ 430 (532)
..... .........+ ..|+.|++++|+++.++. ....++|+.|.+.++..++.++.
T Consensus 123 ~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~------- 195 (350)
T 4ay9_X 123 HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPN------- 195 (350)
T ss_dssp TTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCT-------
T ss_pred hhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCH-------
Confidence 11100 0000111123 357778888887777664 34566788888888888888875
Q ss_pred CcccCcccccccccceeeccccccccccCCCCcCCCCccEEeecCCCCCCCCCCCCCCCCCceeEEecc
Q 009534 431 PSEEMQNLIPFARLERLSLGGLENLRSIYPRALPFPHLKELHVTLCPKLKKLPFDCTSGHERKLIIKGQ 499 (532)
Q Consensus 431 ~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~l~~L~~~~~~ 499 (532)
..+..+++|+.|+++++ +++.+|. ..+..|+.|.+.+|.+++.+|. .. .+.+|+.....
T Consensus 196 -----~~f~~l~~L~~LdLs~N-~l~~lp~--~~~~~L~~L~~l~~~~l~~lP~-l~-~l~~L~~l~l~ 254 (350)
T 4ay9_X 196 -----DVFHGASGPVILDISRT-RIHSLPS--YGLENLKKLRARSTYNLKKLPT-LE-KLVALMEASLT 254 (350)
T ss_dssp -----TTTTTEECCSEEECTTS-CCCCCCS--SSCTTCCEEECTTCTTCCCCCC-TT-TCCSCCEEECS
T ss_pred -----HHhccCcccchhhcCCC-CcCccCh--hhhccchHhhhccCCCcCcCCC-ch-hCcChhhCcCC
Confidence 35788999999999986 6899986 3478999999999999999995 22 24666666544
No 72
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.88 E-value=3.8e-09 Score=112.52 Aligned_cols=129 Identities=19% Similarity=0.274 Sum_probs=75.7
Q ss_pred cCCCeEEEecCCCCCcccc--ccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCCc
Q 009534 323 SNTPSLSLTNCRSLSSLSV--LTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTW 400 (532)
Q Consensus 323 ~~L~~L~l~~c~~l~~l~~--~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~ 400 (532)
++|+.|++++|. ++.++. ..+..+++|+.|++++| .++.+|.... .+++|++|++++|.++.+|.
T Consensus 361 ~~L~~L~Ls~N~-l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~-----------~~~~L~~L~Ls~N~l~~l~~ 427 (549)
T 2z81_A 361 PSLQTLVLSQNH-LRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQ-----------WPEKMRFLNLSSTGIRVVKT 427 (549)
T ss_dssp TTCCEEECTTSC-CCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCSCCC-----------CCTTCCEEECTTSCCSCCCT
T ss_pred ccCcEEEccCCc-ccccccchhhhhcCCCCCEEECCCC-CCccCChhhc-----------ccccccEEECCCCCcccccc
Confidence 446666666543 444432 22455556666666655 3444443221 35566666666665555442
Q ss_pred hhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccccCCCCcCCCCccEEeecCCCCCC
Q 009534 401 LILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIYPRALPFPHLKELHVTLCPKLK 480 (532)
Q Consensus 401 l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~ 480 (532)
...++|+.|++++|. +..+ ...+++|++|+++++ +++.+|. ...+++|+.|++++| +++
T Consensus 428 -~~~~~L~~L~Ls~N~-l~~~----------------~~~l~~L~~L~Ls~N-~l~~ip~-~~~l~~L~~L~Ls~N-~l~ 486 (549)
T 2z81_A 428 -CIPQTLEVLDVSNNN-LDSF----------------SLFLPRLQELYISRN-KLKTLPD-ASLFPVLLVMKISRN-QLK 486 (549)
T ss_dssp -TSCTTCSEEECCSSC-CSCC----------------CCCCTTCCEEECCSS-CCSSCCC-GGGCTTCCEEECCSS-CCC
T ss_pred -hhcCCceEEECCCCC-hhhh----------------cccCChhcEEECCCC-ccCcCCC-cccCccCCEEecCCC-ccC
Confidence 112456666665542 2222 235789999999987 6778876 456899999999987 566
Q ss_pred CCCCC
Q 009534 481 KLPFD 485 (532)
Q Consensus 481 ~lp~~ 485 (532)
.+|..
T Consensus 487 ~~~~~ 491 (549)
T 2z81_A 487 SVPDG 491 (549)
T ss_dssp CCCTT
T ss_pred CcCHH
Confidence 66543
No 73
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.85 E-value=1e-08 Score=106.62 Aligned_cols=97 Identities=12% Similarity=0.070 Sum_probs=69.7
Q ss_pred cCCCCCccEEEEeCC-ccccCCchhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccc
Q 009534 379 THGFFSLHKVSIWGS-KLRHVTWLILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRS 457 (532)
Q Consensus 379 ~~~l~~L~~L~l~~c-~L~~l~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~ 457 (532)
...+++|++|++++| .+..++ +..+++|+.|++++|. +..+ .+..+++|+.|++.++ +++.
T Consensus 144 l~~l~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~ls~n~-l~~l---------------~l~~l~~L~~L~l~~N-~l~~ 205 (457)
T 3bz5_A 144 VSHNTQLTELDCHLNKKITKLD-VTPQTQLTTLDCSFNK-ITEL---------------DVSQNKLLNRLNCDTN-NITK 205 (457)
T ss_dssp CTTCTTCCEEECTTCSCCCCCC-CTTCTTCCEEECCSSC-CCCC---------------CCTTCTTCCEEECCSS-CCSC
T ss_pred cccCCcCCEEECCCCCcccccc-cccCCcCCEEECCCCc-ccee---------------ccccCCCCCEEECcCC-cCCe
Confidence 346788999999999 777774 7788999999998764 5554 2456788999999876 4666
Q ss_pred cCCCCcCCCCccEEeecCCCCCCCCCCCCCCCCCceeEEecc
Q 009534 458 IYPRALPFPHLKELHVTLCPKLKKLPFDCTSGHERKLIIKGQ 499 (532)
Q Consensus 458 i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~l~~L~~~~~~ 499 (532)
++ ...+++|+.|++++| ++..+|... +..|+..+..
T Consensus 206 ~~--l~~l~~L~~L~Ls~N-~l~~ip~~~---l~~L~~L~l~ 241 (457)
T 3bz5_A 206 LD--LNQNIQLTFLDCSSN-KLTEIDVTP---LTQLTYFDCS 241 (457)
T ss_dssp CC--CTTCTTCSEEECCSS-CCSCCCCTT---CTTCSEEECC
T ss_pred ec--cccCCCCCEEECcCC-cccccCccc---cCCCCEEEee
Confidence 63 667889999999887 566777432 2444444444
No 74
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.85 E-value=1.6e-08 Score=94.22 Aligned_cols=128 Identities=16% Similarity=0.209 Sum_probs=91.3
Q ss_pred CCCeEEEecCCCCCccc-cccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCCc--
Q 009534 324 NTPSLSLTNCRSLSSLS-VLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTW-- 400 (532)
Q Consensus 324 ~L~~L~l~~c~~l~~l~-~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~-- 400 (532)
.++.|+++++. +..++ ...+..+++|+.|+++++ .++.++..... .+++|++|++++|.++.++.
T Consensus 33 ~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~----------~l~~L~~L~Ls~N~l~~~~~~~ 100 (220)
T 2v70_A 33 YTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFE----------GASGVNEILLTSNRLENVQHKM 100 (220)
T ss_dssp TCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTT----------TCTTCCEEECCSSCCCCCCGGG
T ss_pred CCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCC-cCCEECHHHhC----------CCCCCCEEECCCCccCccCHhH
Confidence 37788888854 67663 344677888888888875 46666554433 68888888888888777765
Q ss_pred hhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeecccccccccc-CCCCcCCCCccEEeecCCC
Q 009534 401 LILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSI-YPRALPFPHLKELHVTLCP 477 (532)
Q Consensus 401 l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i-~~~~~~~p~L~~L~i~~C~ 477 (532)
+..+++|++|+++++. +..++. ..+..+++|+.|+++++ +++.+ |..+..+++|+.|++.+++
T Consensus 101 ~~~l~~L~~L~Ls~N~-l~~~~~------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 101 FKGLESLKTLMLRSNR-ITCVGN------------DSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp GTTCSSCCEEECTTSC-CCCBCT------------TSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred hcCCcCCCEEECCCCc-CCeECH------------hHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcC
Confidence 6778888888887754 555533 26677888888888875 56666 4456668888888887753
No 75
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.84 E-value=1e-08 Score=101.90 Aligned_cols=173 Identities=15% Similarity=0.112 Sum_probs=94.3
Q ss_pred hhhhcCCccCceeeEEeccchhHHHhhcCCcccccccCCCeEEEecCCCCCccccccccccccccceeeccccCcce--e
Q 009534 287 VEELLGLKHLNVLTITLHSFAALQRLLTYPSLQSIVSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEE--M 364 (532)
Q Consensus 287 ~~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~--l 364 (532)
...+..+++|+.|+++ .+ .+..++... .++|++|+++++. +..++...+..+++|+.|+++++. ++. +
T Consensus 95 ~~~~~~l~~L~~L~L~--~n-~l~~l~~~~-----~~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~ 164 (332)
T 2ft3_A 95 EKAFSPLRKLQKLYIS--KN-HLVEIPPNL-----PSSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNP-LENSGF 164 (332)
T ss_dssp GGGSTTCTTCCEEECC--SS-CCCSCCSSC-----CTTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCC-CBGGGS
T ss_pred HhHhhCcCCCCEEECC--CC-cCCccCccc-----cccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCc-cccCCC
Confidence 4455666677777643 22 122222211 1447777777753 666665556777777777777653 221 1
Q ss_pred eecccC---Cc-----c--ccccccCCCCCccEEEEeCCccccCC--chhcCCCcceeeeccccccccccccccccCcCc
Q 009534 365 EIDYAG---GE-----V--KRIRETHGFFSLHKVSIWGSKLRHVT--WLILAPNLKLIQMYDCRCLEEIISLEKLGEVPS 432 (532)
Q Consensus 365 ~~~~~~---~~-----~--~~~~~~~~l~~L~~L~l~~c~L~~l~--~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~ 432 (532)
...... .+ . ........+++|++|++++|.++.++ .+..+++|+.|+++++. +..++.
T Consensus 165 ~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~--------- 234 (332)
T 2ft3_A 165 EPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ-IRMIEN--------- 234 (332)
T ss_dssp CTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC-CCCCCT---------
T ss_pred CcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CCcCCh---------
Confidence 111100 00 0 00000011245666666666555543 25566666666666543 344332
Q ss_pred ccCcccccccccceeeccccccccccCCCCcCCCCccEEeecCCCCCCCCCC
Q 009534 433 EEMQNLIPFARLERLSLGGLENLRSIYPRALPFPHLKELHVTLCPKLKKLPF 484 (532)
Q Consensus 433 ~~~~~~~~~~~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~ 484 (532)
..+..+++|+.|+++++ .+..+|.....+++|+.|+++++ +++.+|.
T Consensus 235 ---~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~l~~~~~ 281 (332)
T 2ft3_A 235 ---GSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTN-NITKVGV 281 (332)
T ss_dssp ---TGGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSS-CCCBCCT
T ss_pred ---hHhhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCC-CCCccCh
Confidence 24666778888888775 56677777777788888888876 4666654
No 76
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.84 E-value=9.1e-09 Score=114.28 Aligned_cols=88 Identities=10% Similarity=-0.004 Sum_probs=50.9
Q ss_pred cCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccc-cCCc-
Q 009534 323 SNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLR-HVTW- 400 (532)
Q Consensus 323 ~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~-~l~~- 400 (532)
++|++|++++|.-...+|.. +..+++|+.|++++|.-...+|.. ...+++|++|++++|++. .+|.
T Consensus 466 ~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~L~~N~l~~~~p~~-----------~~~l~~L~~L~L~~N~l~~~~p~~ 533 (768)
T 3rgz_A 466 KTLETLILDFNDLTGEIPSG-LSNCTNLNWISLSNNRLTGEIPKW-----------IGRLENLAILKLSNNSFSGNIPAE 533 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCCSCCCGG-----------GGGCTTCCEEECCSSCCEEECCGG
T ss_pred CCceEEEecCCcccCcCCHH-HhcCCCCCEEEccCCccCCcCChH-----------HhcCCCCCEEECCCCcccCcCCHH
Confidence 44555555554422233322 455555555555555322223322 235888888888888665 3554
Q ss_pred hhcCCCcceeeecccccccccc
Q 009534 401 LILAPNLKLIQMYDCRCLEEII 422 (532)
Q Consensus 401 l~~l~~L~~L~l~~c~~l~~i~ 422 (532)
+..+++|+.|++++|.-...+|
T Consensus 534 l~~l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 534 LGDCRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp GGGCTTCCEEECCSSEEESBCC
T ss_pred HcCCCCCCEEECCCCccCCcCC
Confidence 7788888888888776443443
No 77
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.84 E-value=9.3e-09 Score=107.29 Aligned_cols=86 Identities=14% Similarity=0.207 Sum_probs=50.6
Q ss_pred CCCCccEEEEeCCccccCCchhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccccCC
Q 009534 381 GFFSLHKVSIWGSKLRHVTWLILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIYP 460 (532)
Q Consensus 381 ~l~~L~~L~l~~c~L~~l~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~ 460 (532)
.+++|++|++++|.+..++.+..+++|+.|++++|. +..++ .+..+++|+.|++.+| .+..++
T Consensus 285 ~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~-l~~~~--------------~~~~l~~L~~L~l~~n-~l~~~~- 347 (466)
T 1o6v_A 285 GLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN-ISDIS--------------PVSSLTKLQRLFFYNN-KVSDVS- 347 (466)
T ss_dssp TCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSC-CSCCG--------------GGGGCTTCCEEECCSS-CCCCCG-
T ss_pred CCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCc-CCCch--------------hhccCccCCEeECCCC-ccCCch-
Confidence 466666676666666666556666677777776653 33332 2345666777777665 344443
Q ss_pred CCcCCCCccEEeecCCCCCCCCC
Q 009534 461 RALPFPHLKELHVTLCPKLKKLP 483 (532)
Q Consensus 461 ~~~~~p~L~~L~i~~C~~L~~lp 483 (532)
....+++|+.|++++|+--...|
T Consensus 348 ~l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 348 SLANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp GGTTCTTCCEEECCSSCCCBCGG
T ss_pred hhccCCCCCEEeCCCCccCccch
Confidence 34556667777776665433334
No 78
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.84 E-value=5.2e-09 Score=100.50 Aligned_cols=148 Identities=21% Similarity=0.233 Sum_probs=107.6
Q ss_pred hhcCCccCceeeEEeccchhHHHhhcCCcccccccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecc
Q 009534 289 ELLGLKHLNVLTITLHSFAALQRLLTYPSLQSIVSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDY 368 (532)
Q Consensus 289 ~l~~L~~L~~L~i~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~ 368 (532)
.+..+++|+.|+++ ++ .+..++ ....+++|+.|+++++. +..++. +..+++|+.|+++++ .++.++.
T Consensus 36 ~~~~l~~L~~L~l~--~n-~i~~l~----~l~~l~~L~~L~L~~N~-i~~~~~--l~~l~~L~~L~L~~N-~l~~l~~-- 102 (263)
T 1xeu_A 36 SQKELSGVQNFNGD--NS-NIQSLA----GMQFFTNLKELHLSHNQ-ISDLSP--LKDLTKLEELSVNRN-RLKNLNG-- 102 (263)
T ss_dssp CHHHHTTCSEEECT--TS-CCCCCT----TGGGCTTCCEEECCSSC-CCCCGG--GTTCSSCCEEECCSS-CCSCCTT--
T ss_pred chhhcCcCcEEECc--CC-Ccccch----HHhhCCCCCEEECCCCc-cCCChh--hccCCCCCEEECCCC-ccCCcCc--
Confidence 34556778888743 33 222232 12235779999999864 777765 788899999999887 4554432
Q ss_pred cCCccccccccCCCCCccEEEEeCCccccCCchhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceee
Q 009534 369 AGGEVKRIRETHGFFSLHKVSIWGSKLRHVTWLILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLS 448 (532)
Q Consensus 369 ~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~ 448 (532)
.. . ++|++|++++|.++.++.+..+++|+.|+++++. +..++ .+..+++|+.|+
T Consensus 103 ~~----------~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~-i~~~~--------------~l~~l~~L~~L~ 156 (263)
T 1xeu_A 103 IP----------S-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNK-LKSIV--------------MLGFLSKLEVLD 156 (263)
T ss_dssp CC----------C-SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSC-CCBCG--------------GGGGCTTCCEEE
T ss_pred cc----------c-CcccEEEccCCccCCChhhcCcccccEEECCCCc-CCCCh--------------HHccCCCCCEEE
Confidence 11 2 8899999999988888888899999999998764 55552 466789999999
Q ss_pred ccccccccccCCCCcCCCCccEEeecCCC
Q 009534 449 LGGLENLRSIYPRALPFPHLKELHVTLCP 477 (532)
Q Consensus 449 l~~~~~L~~i~~~~~~~p~L~~L~i~~C~ 477 (532)
++++ .+..+ .....+++|+.|++++++
T Consensus 157 L~~N-~i~~~-~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 157 LHGN-EITNT-GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp CTTS-CCCBC-TTSTTCCCCCEEEEEEEE
T ss_pred CCCC-cCcch-HHhccCCCCCEEeCCCCc
Confidence 9986 46666 456778999999999875
No 79
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.84 E-value=4.7e-09 Score=113.24 Aligned_cols=134 Identities=13% Similarity=0.024 Sum_probs=104.7
Q ss_pred cccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCC-
Q 009534 321 IVSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVT- 399 (532)
Q Consensus 321 ~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~- 399 (532)
.+++|+.|++++|. +.......+..+++|+.|++++|.-...+...... .+++|++|++++|.++.++
T Consensus 422 ~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----------~l~~L~~L~Ls~n~l~~~~~ 490 (606)
T 3vq2_A 422 SLEKLLYLDISYTN-TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFA----------NTTNLTFLDLSKCQLEQISW 490 (606)
T ss_dssp TCTTCCEEECTTSC-CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT----------TCTTCCEEECTTSCCCEECT
T ss_pred ccccCCEEECcCCC-CCccchhhhcCCCCCCEEECCCCcCCCcchHHhhc----------cCCCCCEEECCCCcCCccCh
Confidence 36789999999987 55544445888999999999998543323333322 6899999999999887754
Q ss_pred -chhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccccCCCCcCCC-CccEEeecCCC
Q 009534 400 -WLILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIYPRALPFP-HLKELHVTLCP 477 (532)
Q Consensus 400 -~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~~~~~~p-~L~~L~i~~C~ 477 (532)
++..+++|++|++++|. +..+++ ..+..+++|+.|+++++. ++.+|.....+| +|+.|++.++|
T Consensus 491 ~~~~~l~~L~~L~Ls~N~-l~~~~~------------~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 491 GVFDTLHRLQLLNMSHNN-LLFLDS------------SHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp TTTTTCTTCCEEECCSSC-CSCEEG------------GGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCC
T ss_pred hhhcccccCCEEECCCCc-CCCcCH------------HHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCC
Confidence 37889999999999885 555533 278889999999999975 889998877887 59999999875
Q ss_pred CC
Q 009534 478 KL 479 (532)
Q Consensus 478 ~L 479 (532)
-.
T Consensus 557 ~~ 558 (606)
T 3vq2_A 557 VA 558 (606)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 80
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.83 E-value=6.2e-09 Score=112.56 Aligned_cols=126 Identities=16% Similarity=0.221 Sum_probs=78.4
Q ss_pred CCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCCc--hh
Q 009534 325 TPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTW--LI 402 (532)
Q Consensus 325 L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~--l~ 402 (532)
+++|+|++. .++.++...|.++++|++|++++| .++.++.+... .+++|++|+|++|+++.+|. +.
T Consensus 54 ~~~LdLs~N-~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~----------~L~~L~~L~Ls~N~l~~l~~~~f~ 121 (635)
T 4g8a_A 54 TKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQ----------SLSHLSTLILTGNPIQSLALGAFS 121 (635)
T ss_dssp CCEEECTTS-CCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTT----------TCTTCCEEECTTCCCCEECGGGGT
T ss_pred CCEEEeeCC-CCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhc----------CCCCCCEEEccCCcCCCCCHHHhc
Confidence 677777763 467776666677777777777765 45556554433 56777777777776666653 56
Q ss_pred cCCCcceeeeccccccccccccccccCcCcccCcccccccccceeecccccccccc--CCCCcCCCCccEEeecCC
Q 009534 403 LAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSI--YPRALPFPHLKELHVTLC 476 (532)
Q Consensus 403 ~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i--~~~~~~~p~L~~L~i~~C 476 (532)
.+++|++|++++|. +..++. ..+..+++|++|+++++ .++.+ |.....+++|+.|+++++
T Consensus 122 ~L~~L~~L~Ls~N~-l~~l~~------------~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 122 GLSSLQKLVAVETN-LASLEN------------FPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp TCTTCCEEECTTSC-CCCSTT------------CCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred CCCCCCEEECCCCc-CCCCCh------------hhhhcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCc
Confidence 67777777776653 555543 24566677777777664 23332 334455667777777665
No 81
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.81 E-value=2.4e-08 Score=95.83 Aligned_cols=127 Identities=17% Similarity=0.220 Sum_probs=102.5
Q ss_pred cccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCCc
Q 009534 321 IVSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTW 400 (532)
Q Consensus 321 ~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~ 400 (532)
.+++|+.|++++| .+..++ .+..+++|+.|+++++ .+..++. . ..+++|++|++++|+++.++.
T Consensus 39 ~l~~L~~L~l~~n-~i~~l~--~l~~l~~L~~L~L~~N-~i~~~~~-l-----------~~l~~L~~L~L~~N~l~~l~~ 102 (263)
T 1xeu_A 39 ELSGVQNFNGDNS-NIQSLA--GMQFFTNLKELHLSHN-QISDLSP-L-----------KDLTKLEELSVNRNRLKNLNG 102 (263)
T ss_dssp HHTTCSEEECTTS-CCCCCT--TGGGCTTCCEEECCSS-CCCCCGG-G-----------TTCSSCCEEECCSSCCSCCTT
T ss_pred hcCcCcEEECcCC-Ccccch--HHhhCCCCCEEECCCC-ccCCChh-h-----------ccCCCCCEEECCCCccCCcCc
Confidence 3577999999997 488887 3888999999999987 5665554 2 269999999999999998887
Q ss_pred hhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccccCCCCcCCCCccEEeecCCCCCC
Q 009534 401 LILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIYPRALPFPHLKELHVTLCPKLK 480 (532)
Q Consensus 401 l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~ 480 (532)
+.. ++|+.|++++|. +..++ .+..+++|+.|+++++ +++.++ ....+++|+.|++++|. +.
T Consensus 103 ~~~-~~L~~L~L~~N~-l~~~~--------------~l~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~L~~L~L~~N~-i~ 163 (263)
T 1xeu_A 103 IPS-ACLSRLFLDNNE-LRDTD--------------SLIHLKNLEILSIRNN-KLKSIV-MLGFLSKLEVLDLHGNE-IT 163 (263)
T ss_dssp CCC-SSCCEEECCSSC-CSBSG--------------GGTTCTTCCEEECTTS-CCCBCG-GGGGCTTCCEEECTTSC-CC
T ss_pred ccc-CcccEEEccCCc-cCCCh--------------hhcCcccccEEECCCC-cCCCCh-HHccCCCCCEEECCCCc-Cc
Confidence 666 999999998874 55552 4677999999999986 477776 56789999999999974 44
Q ss_pred CC
Q 009534 481 KL 482 (532)
Q Consensus 481 ~l 482 (532)
.+
T Consensus 164 ~~ 165 (263)
T 1xeu_A 164 NT 165 (263)
T ss_dssp BC
T ss_pred ch
Confidence 44
No 82
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.81 E-value=4.8e-09 Score=116.48 Aligned_cols=92 Identities=17% Similarity=0.023 Sum_probs=58.0
Q ss_pred CCCCccEEEEeCCcccc-CCc-hhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeecccccccccc
Q 009534 381 GFFSLHKVSIWGSKLRH-VTW-LILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSI 458 (532)
Q Consensus 381 ~l~~L~~L~l~~c~L~~-l~~-l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i 458 (532)
.+++|++|++++|.+.. +|. +..+++|+.|++++|.-...++. .+..+++|+.|+++++.-...+
T Consensus 464 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~-------------~~~~l~~L~~L~L~~N~l~~~~ 530 (768)
T 3rgz_A 464 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK-------------WIGRLENLAILKLSNNSFSGNI 530 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG-------------GGGGCTTCCEEECCSSCCEEEC
T ss_pred CCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCCh-------------HHhcCCCCCEEECCCCcccCcC
Confidence 46666666666665553 332 56666677777766653334444 5666777777777776555566
Q ss_pred CCCCcCCCCccEEeecCCCCCCCCCCC
Q 009534 459 YPRALPFPHLKELHVTLCPKLKKLPFD 485 (532)
Q Consensus 459 ~~~~~~~p~L~~L~i~~C~~L~~lp~~ 485 (532)
|.....+++|+.|++++|+-...+|..
T Consensus 531 p~~l~~l~~L~~L~Ls~N~l~g~ip~~ 557 (768)
T 3rgz_A 531 PAELGDCRSLIWLDLNTNLFNGTIPAA 557 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEEESBCCGG
T ss_pred CHHHcCCCCCCEEECCCCccCCcCChH
Confidence 666667777777777777655566643
No 83
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.81 E-value=9.8e-09 Score=107.72 Aligned_cols=88 Identities=14% Similarity=0.065 Sum_probs=50.9
Q ss_pred CCCCccEEEEeCCccccCCc--hhcCCCcceeeeccccccccccccccccCcCcccCcccc-cccccceeeccccccccc
Q 009534 381 GFFSLHKVSIWGSKLRHVTW--LILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLI-PFARLERLSLGGLENLRS 457 (532)
Q Consensus 381 ~l~~L~~L~l~~c~L~~l~~--l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~L~~ 457 (532)
.|++|++|++++|.+..++. ++.+++|+.|+++++. +..+++ ..+. .+++|+.|+++++. +..
T Consensus 118 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~------------~~l~~~l~~L~~L~Ls~N~-l~~ 183 (487)
T 3oja_A 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNF------------AELAASSDTLEHLNLQYNF-IYD 183 (487)
T ss_dssp CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC-CCEEEG------------GGGGGGTTTCCEEECTTSC-CCE
T ss_pred ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC-CCCcCh------------HHHhhhCCcccEEecCCCc-ccc
Confidence 35667777777776665432 5667777777776654 333322 1332 46777777777653 555
Q ss_pred cCCCCcCCCCccEEeecCCCCCCCCCC
Q 009534 458 IYPRALPFPHLKELHVTLCPKLKKLPF 484 (532)
Q Consensus 458 i~~~~~~~p~L~~L~i~~C~~L~~lp~ 484 (532)
++. ...+++|+.|++++| ++..+|.
T Consensus 184 ~~~-~~~l~~L~~L~Ls~N-~l~~~~~ 208 (487)
T 3oja_A 184 VKG-QVVFAKLKTLDLSSN-KLAFMGP 208 (487)
T ss_dssp EEC-CCCCTTCCEEECCSS-CCCEECG
T ss_pred ccc-cccCCCCCEEECCCC-CCCCCCH
Confidence 543 224677777777765 3444544
No 84
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.80 E-value=8.8e-09 Score=107.48 Aligned_cols=103 Identities=12% Similarity=0.250 Sum_probs=57.4
Q ss_pred hhhhcCCccCceeeEEeccchhHHHhhcCCcccccccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeee
Q 009534 287 VEELLGLKHLNVLTITLHSFAALQRLLTYPSLQSIVSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEI 366 (532)
Q Consensus 287 ~~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~ 366 (532)
+..+..+++|+.|+++ .+. +..++. ...+++|++|+++++. +..++. +.++++|++|++++| .+..++.
T Consensus 61 l~~~~~l~~L~~L~Ls--~n~-l~~~~~----~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~L~~n-~l~~~~~ 129 (466)
T 1o6v_A 61 IDGVEYLNNLTQINFS--NNQ-LTDITP----LKNLTKLVDILMNNNQ-IADITP--LANLTNLTGLTLFNN-QITDIDP 129 (466)
T ss_dssp CTTGGGCTTCCEEECC--SSC-CCCCGG----GTTCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSS-CCCCCGG
T ss_pred CcchhhhcCCCEEECC--CCc-cCCchh----hhccccCCEEECCCCc-cccChh--hcCCCCCCEEECCCC-CCCCChH
Confidence 3445666777777743 221 122221 2234567777777654 455543 666777777777765 3443332
Q ss_pred cccCCccccccccCCCCCccEEEEeCCccccCCchhcCCCcceeee
Q 009534 367 DYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTWLILAPNLKLIQM 412 (532)
Q Consensus 367 ~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~l~~l~~L~~L~l 412 (532)
. ..+++|++|++++|.+..++.+..+++|+.|.+
T Consensus 130 --~----------~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l 163 (466)
T 1o6v_A 130 --L----------KNLTNLNRLELSSNTISDISALSGLTSLQQLSF 163 (466)
T ss_dssp --G----------TTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEE
T ss_pred --H----------cCCCCCCEEECCCCccCCChhhccCCcccEeec
Confidence 1 246667777776666555555555556655555
No 85
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.80 E-value=1.6e-08 Score=107.55 Aligned_cols=132 Identities=18% Similarity=0.253 Sum_probs=74.3
Q ss_pred ccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccC---
Q 009534 322 VSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHV--- 398 (532)
Q Consensus 322 l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l--- 398 (532)
+++|++|+++++. +..++...+..+++|++|+++++ .+..++..... .+++|++|++++|.++.+
T Consensus 49 l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~----------~l~~L~~L~Ls~n~l~~~~~~ 116 (549)
T 2z81_A 49 CANLQVLILKSSR-INTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFG----------PLSSLKYLNLMGNPYQTLGVT 116 (549)
T ss_dssp CTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHT----------TCTTCCEEECTTCCCSSSCSS
T ss_pred CCcccEEECCCCC-cCccChhhccccccCCEEECCCC-ccCccCHHHhc----------cCCCCcEEECCCCcccccchh
Confidence 4556666666643 55555444666666666666665 34444433222 466666666666655532
Q ss_pred CchhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccccCCCCcCCCCccEEeecCCC
Q 009534 399 TWLILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIYPRALPFPHLKELHVTLCP 477 (532)
Q Consensus 399 ~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~ 477 (532)
+.+..+++|++|++++|..+..++. ..+..+++|++|++.++.--..+|.....+++|+.|++.++.
T Consensus 117 ~~~~~l~~L~~L~L~~n~~~~~~~~------------~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 117 SLFPNLTNLQTLRIGNVETFSEIRR------------IDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp CSCTTCTTCCEEEEEESSSCCEECT------------TTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred hhhhccCCccEEECCCCccccccCH------------hhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence 2355666666666666554444432 245556666666666654333344455566666666666553
No 86
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.80 E-value=1.2e-08 Score=107.93 Aligned_cols=146 Identities=21% Similarity=0.200 Sum_probs=96.5
Q ss_pred ccCCCeEEEecCCCCCc-cccccccccccccceeeccccCcceeee--cccCCccccccccCCCCCccEEEEeCCcccc-
Q 009534 322 VSNTPSLSLTNCRSLSS-LSVLTLASLRHLEALDMRYCKDLEEMEI--DYAGGEVKRIRETHGFFSLHKVSIWGSKLRH- 397 (532)
Q Consensus 322 l~~L~~L~l~~c~~l~~-l~~~~l~~l~~L~~L~i~~c~~L~~l~~--~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~- 397 (532)
+++|++|+++++. +.. +| ..+..+++|+.|+++++. +..++. .. ...+++|++|++++|.+..
T Consensus 323 l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~N~-l~~l~~~~~~----------~~~l~~L~~L~Ls~N~l~~~ 389 (520)
T 2z7x_B 323 ISPFLHLDFSNNL-LTDTVF-ENCGHLTELETLILQMNQ-LKELSKIAEM----------TTQMKSLQQLDISQNSVSYD 389 (520)
T ss_dssp CCCCCEEECCSSC-CCTTTT-TTCCCCSSCCEEECCSSC-CCBHHHHHHH----------HTTCTTCCEEECCSSCCBCC
T ss_pred CCcccEEEeECCc-cChhhh-hhhccCCCCCEEEccCCc-cCccccchHH----------HhhCCCCCEEECCCCcCCcc
Confidence 4567777777765 443 33 336677777777777763 333221 11 1247788888888886666
Q ss_pred CCc--hhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccccCCCCcCCCCccEEeecC
Q 009534 398 VTW--LILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIYPRALPFPHLKELHVTL 475 (532)
Q Consensus 398 l~~--l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~ 475 (532)
+|. +..+++|+.|++++|.-...++. .+. ++|+.|+++++ +++.+|.....+++|+.|++++
T Consensus 390 l~~~~~~~l~~L~~L~Ls~N~l~~~~~~-------------~l~--~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~ 453 (520)
T 2z7x_B 390 EKKGDCSWTKSLLSLNMSSNILTDTIFR-------------CLP--PRIKVLDLHSN-KIKSIPKQVVKLEALQELNVAS 453 (520)
T ss_dssp GGGCSCCCCTTCCEEECCSSCCCGGGGG-------------SCC--TTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCS
T ss_pred cccchhccCccCCEEECcCCCCCcchhh-------------hhc--ccCCEEECCCC-cccccchhhhcCCCCCEEECCC
Confidence 653 56677888888877653233322 222 79999999987 6788988888999999999999
Q ss_pred CCCCCCCCCCCCCCCCceeEEe
Q 009534 476 CPKLKKLPFDCTSGHERKLIIK 497 (532)
Q Consensus 476 C~~L~~lp~~~~~~l~~L~~~~ 497 (532)
| +++.+|......+..|+..+
T Consensus 454 N-~l~~l~~~~~~~l~~L~~L~ 474 (520)
T 2z7x_B 454 N-QLKSVPDGIFDRLTSLQKIW 474 (520)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEE
T ss_pred C-cCCccCHHHhccCCcccEEE
Confidence 8 68889876222235555543
No 87
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.79 E-value=6.1e-09 Score=96.08 Aligned_cols=159 Identities=14% Similarity=0.131 Sum_probs=116.2
Q ss_pred CccCceeeEEeccchhHHHhhcCCcccccccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCc
Q 009534 293 LKHLNVLTITLHSFAALQRLLTYPSLQSIVSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGE 372 (532)
Q Consensus 293 L~~L~~L~i~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~ 372 (532)
.++|+.|+++ .+. +..++. .....+++|++|+++++ .++.++...+..+++|++|+++++ .+..++.....
T Consensus 27 ~~~l~~L~l~--~n~-l~~~~~--~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~-- 97 (208)
T 2o6s_A 27 PAQTTYLDLE--TNS-LKSLPN--GVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFD-- 97 (208)
T ss_dssp CTTCSEEECC--SSC-CCCCCT--TTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT--
T ss_pred CCCCcEEEcC--CCc-cCcCCh--hhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC-cCCccCHhHhc--
Confidence 3578888854 331 222221 11234577999999996 588888776788999999999987 56666654433
Q ss_pred cccccccCCCCCccEEEEeCCccccCCc--hhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeecc
Q 009534 373 VKRIRETHGFFSLHKVSIWGSKLRHVTW--LILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLG 450 (532)
Q Consensus 373 ~~~~~~~~~l~~L~~L~l~~c~L~~l~~--l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 450 (532)
.+++|++|++++|+++.++. +..+++|+.|+++++. +..++. ..+..+++|+.|++.
T Consensus 98 --------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~------------~~~~~l~~L~~L~l~ 156 (208)
T 2o6s_A 98 --------KLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPD------------GVFDRLTSLQYIWLH 156 (208)
T ss_dssp --------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCT------------TTTTTCTTCCEEECC
T ss_pred --------CccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCH------------HHhccCCCccEEEec
Confidence 68999999999998888765 6789999999998864 666654 246778999999999
Q ss_pred ccccccccCCCCcCCCCccEEeecCCCCCCCCCCCCCC
Q 009534 451 GLENLRSIYPRALPFPHLKELHVTLCPKLKKLPFDCTS 488 (532)
Q Consensus 451 ~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~ 488 (532)
+++- .+.+|.|+.|.++.+..-..+|.....
T Consensus 157 ~N~~-------~~~~~~l~~L~~~~n~~~g~ip~~~~~ 187 (208)
T 2o6s_A 157 DNPW-------DCTCPGIRYLSEWINKHSGVVRNSAGS 187 (208)
T ss_dssp SCCB-------CCCTTTTHHHHHHHHHCTTTBBCTTSS
T ss_pred CCCe-------ecCCCCHHHHHHHHHhCCceeeccCcc
Confidence 8742 345678888888887666677765443
No 88
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.79 E-value=1.6e-08 Score=108.06 Aligned_cols=152 Identities=15% Similarity=0.142 Sum_probs=101.6
Q ss_pred ccCCCeEEEecCCCCCccc--cccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCC
Q 009534 322 VSNTPSLSLTNCRSLSSLS--VLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVT 399 (532)
Q Consensus 322 l~~L~~L~l~~c~~l~~l~--~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~ 399 (532)
+++|++|+++++. +.... ...+..+++|+.|++++| .+..++... ..+++|++|++++|.+...+
T Consensus 346 ~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~-----------~~l~~L~~L~l~~n~l~~~~ 412 (570)
T 2z63_A 346 LPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNF-----------LGLEQLEHLDFQHSNLKQMS 412 (570)
T ss_dssp CTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCSC-SEEEEEEEE-----------ETCTTCCEEECTTSEEESCT
T ss_pred CCCCCEEeCcCCc-cCccccccccccccCccCEEECCCC-ccccccccc-----------cccCCCCEEEccCCcccccc
Confidence 4556666666643 43332 122456677777777776 344454432 25889999999988666642
Q ss_pred ---chhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccc-cccCCCCcCCCCccEEeecC
Q 009534 400 ---WLILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENL-RSIYPRALPFPHLKELHVTL 475 (532)
Q Consensus 400 ---~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L-~~i~~~~~~~p~L~~L~i~~ 475 (532)
.+..+++|+.|++++|.-....+. .+..+++|+.|++.+|.-. ..+|.....+++|+.|++++
T Consensus 413 ~~~~~~~l~~L~~L~l~~n~l~~~~~~-------------~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~ 479 (570)
T 2z63_A 413 EFSVFLSLRNLIYLDISHTHTRVAFNG-------------IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479 (570)
T ss_dssp TSCTTTTCTTCCEEECTTSCCEECCTT-------------TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred chhhhhcCCCCCEEeCcCCcccccchh-------------hhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCC
Confidence 367889999999988764333333 6788999999999998644 35787788899999999999
Q ss_pred CCCCCCCCCCCCCCCCceeEEecch
Q 009534 476 CPKLKKLPFDCTSGHERKLIIKGQE 500 (532)
Q Consensus 476 C~~L~~lp~~~~~~l~~L~~~~~~~ 500 (532)
|.--...|...... ++|+..+...
T Consensus 480 n~l~~~~~~~~~~l-~~L~~L~l~~ 503 (570)
T 2z63_A 480 CQLEQLSPTAFNSL-SSLQVLNMAS 503 (570)
T ss_dssp SCCCEECTTTTTTC-TTCCEEECCS
T ss_pred CccccCChhhhhcc-cCCCEEeCCC
Confidence 95443336554433 5555555543
No 89
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.78 E-value=1.2e-08 Score=110.08 Aligned_cols=85 Identities=18% Similarity=0.161 Sum_probs=41.1
Q ss_pred CCCCccEEEEeCCccccCC--chhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeecccccccccc
Q 009534 381 GFFSLHKVSIWGSKLRHVT--WLILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSI 458 (532)
Q Consensus 381 ~l~~L~~L~l~~c~L~~l~--~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i 458 (532)
.+++|++|++++|.+...+ .+..+++|++|++++|.-....+. ....+..+++|+.|++++|. +..+
T Consensus 423 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----------~~~~~~~l~~L~~L~Ls~n~-l~~~ 491 (606)
T 3t6q_A 423 NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ----------KTNSLQTLGRLEILVLSFCD-LSSI 491 (606)
T ss_dssp TCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEEC----------SSCGGGGCTTCCEEECTTSC-CCEE
T ss_pred CcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccc----------cchhhccCCCccEEECCCCc-cCcc
Confidence 4566666666666544432 245566666666665542111111 01134445555555555542 3333
Q ss_pred -CCCCcCCCCccEEeecCC
Q 009534 459 -YPRALPFPHLKELHVTLC 476 (532)
Q Consensus 459 -~~~~~~~p~L~~L~i~~C 476 (532)
|.....+++|+.|++++|
T Consensus 492 ~~~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 492 DQHAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp CTTTTTTCTTCCEEECCSS
T ss_pred ChhhhccccCCCEEECCCC
Confidence 233445555555555554
No 90
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.78 E-value=1.5e-08 Score=97.89 Aligned_cols=149 Identities=17% Similarity=0.207 Sum_probs=99.5
Q ss_pred ccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCCc-
Q 009534 322 VSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTW- 400 (532)
Q Consensus 322 l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~- 400 (532)
+++|++|+++++ .+..++...+..+++|++|+++++ .+..++..... .+++|++|++.+|.+..++.
T Consensus 51 l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~----------~l~~L~~L~l~~n~l~~~~~~ 118 (276)
T 2z62_A 51 FPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFS----------GLSSLQKLVAVETNLASLENF 118 (276)
T ss_dssp CTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTT----------TCTTCCEEECTTSCCCCSTTC
T ss_pred ccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCC-ccCccChhhhc----------CCccccEEECCCCCccccCch
Confidence 566888888886 477777666777888888888876 45555544333 57888888888887777553
Q ss_pred -hhcCCCcceeeecccccccc--ccccccccCcCcccCcccccccccceeeccccccccccCC-CCcCCCCcc----EEe
Q 009534 401 -LILAPNLKLIQMYDCRCLEE--IISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIYP-RALPFPHLK----ELH 472 (532)
Q Consensus 401 -l~~l~~L~~L~l~~c~~l~~--i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~-~~~~~p~L~----~L~ 472 (532)
+..+++|++|+++++. +.. ++. .+..+++|++|+++++ .++.++. ....+++|+ .|+
T Consensus 119 ~~~~l~~L~~L~l~~n~-l~~~~l~~-------------~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~l~l~L~ 183 (276)
T 2z62_A 119 PIGHLKTLKELNVAHNL-IQSFKLPE-------------YFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLD 183 (276)
T ss_dssp CCTTCTTCCEEECCSSC-CCCCCCCG-------------GGGGCTTCCEEECCSS-CCCEECGGGGHHHHTCTTCCEEEE
T ss_pred hcccCCCCCEEECcCCc-cceecCch-------------hhccCCCCCEEECCCC-CCCcCCHHHhhhhhhccccceeee
Confidence 6778888888887754 444 333 6777888888888886 4555543 333444555 788
Q ss_pred ecCCCCCCCCCCCCCCCCCceeEEecc
Q 009534 473 VTLCPKLKKLPFDCTSGHERKLIIKGQ 499 (532)
Q Consensus 473 i~~C~~L~~lp~~~~~~l~~L~~~~~~ 499 (532)
++++ .+..+|...... .+|+..+..
T Consensus 184 ls~n-~l~~~~~~~~~~-~~L~~L~L~ 208 (276)
T 2z62_A 184 LSLN-PMNFIQPGAFKE-IRLKELALD 208 (276)
T ss_dssp CCSS-CCCEECTTSSCS-CCEEEEECC
T ss_pred cCCC-cccccCccccCC-CcccEEECC
Confidence 8775 456666544333 355555544
No 91
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.78 E-value=1.8e-08 Score=101.38 Aligned_cols=135 Identities=21% Similarity=0.218 Sum_probs=106.9
Q ss_pred cCCCeEEEecCCCCCcccccccc-ccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCCc-
Q 009534 323 SNTPSLSLTNCRSLSSLSVLTLA-SLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTW- 400 (532)
Q Consensus 323 ~~L~~L~l~~c~~l~~l~~~~l~-~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~- 400 (532)
.+++.|+|+++ .+..++...+. .+++|+.|+++++ .+..++..... .+++|++|+|++|+++.++.
T Consensus 39 ~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~----------~l~~L~~L~Ls~N~l~~~~~~ 106 (361)
T 2xot_A 39 SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFV----------PVPNLRYLDLSSNHLHTLDEF 106 (361)
T ss_dssp TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTT----------TCTTCCEEECCSSCCCEECTT
T ss_pred CCCCEEECCCC-CCCccChhhhhhcccccCEEECCCC-cCCccChhhcc----------CCCCCCEEECCCCcCCcCCHH
Confidence 34899999995 58888877676 8999999999986 67777655443 68999999999998888765
Q ss_pred -hhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccccCCCC----cCCCCccEEeecC
Q 009534 401 -LILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIYPRA----LPFPHLKELHVTL 475 (532)
Q Consensus 401 -l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~~~----~~~p~L~~L~i~~ 475 (532)
+..+++|+.|+++++. +..+.. ..+..+++|+.|+|+++ .+..+|... ..+++|+.|++++
T Consensus 107 ~~~~l~~L~~L~L~~N~-i~~~~~------------~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~ 172 (361)
T 2xot_A 107 LFSDLQALEVLLLYNNH-IVVVDR------------NAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSS 172 (361)
T ss_dssp TTTTCTTCCEEECCSSC-CCEECT------------TTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCS
T ss_pred HhCCCcCCCEEECCCCc-ccEECH------------HHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCC
Confidence 7889999999998765 555543 36788999999999985 678887754 4689999999998
Q ss_pred CCCCCCCCC
Q 009534 476 CPKLKKLPF 484 (532)
Q Consensus 476 C~~L~~lp~ 484 (532)
+ +++.+|.
T Consensus 173 N-~l~~l~~ 180 (361)
T 2xot_A 173 N-KLKKLPL 180 (361)
T ss_dssp S-CCCCCCH
T ss_pred C-CCCccCH
Confidence 6 6777773
No 92
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.78 E-value=9.6e-09 Score=92.15 Aligned_cols=126 Identities=13% Similarity=0.160 Sum_probs=89.6
Q ss_pred cCCCeEEEecCCCCCccccccccccc-cccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCCc-
Q 009534 323 SNTPSLSLTNCRSLSSLSVLTLASLR-HLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTW- 400 (532)
Q Consensus 323 ~~L~~L~l~~c~~l~~l~~~~l~~l~-~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~- 400 (532)
++|+.|+++++. +..++. +..+. +|+.|+++++ .+..+ ... ..+++|++|++++|.++.+|.
T Consensus 19 ~~L~~L~l~~n~-l~~i~~--~~~~~~~L~~L~Ls~N-~l~~~--~~l----------~~l~~L~~L~Ls~N~l~~~~~~ 82 (176)
T 1a9n_A 19 VRDRELDLRGYK-IPVIEN--LGATLDQFDAIDFSDN-EIRKL--DGF----------PLLRRLKTLLVNNNRICRIGEG 82 (176)
T ss_dssp TSCEEEECTTSC-CCSCCC--GGGGTTCCSEEECCSS-CCCEE--CCC----------CCCSSCCEEECCSSCCCEECSC
T ss_pred CCceEEEeeCCC-CchhHH--hhhcCCCCCEEECCCC-CCCcc--ccc----------ccCCCCCEEECCCCcccccCcc
Confidence 668888988864 666653 44444 8999999886 56655 222 358889999999888888764
Q ss_pred -hhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccccCCC----CcCCCCccEEeecC
Q 009534 401 -LILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIYPR----ALPFPHLKELHVTL 475 (532)
Q Consensus 401 -l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~~----~~~~p~L~~L~i~~ 475 (532)
+..+++|+.|+++++. +..++. ...+..+++|+.|++.+++ +..+|.. ...+|+|+.|++++
T Consensus 83 ~~~~l~~L~~L~L~~N~-i~~~~~-----------~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 83 LDQALPDLTELILTNNS-LVELGD-----------LDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp HHHHCTTCCEEECCSCC-CCCGGG-----------GGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred hhhcCCCCCEEECCCCc-CCcchh-----------hHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCc
Confidence 4788999999998764 555543 1146678889999988875 5566653 56678888888776
Q ss_pred CC
Q 009534 476 CP 477 (532)
Q Consensus 476 C~ 477 (532)
++
T Consensus 150 n~ 151 (176)
T 1a9n_A 150 VK 151 (176)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 93
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.76 E-value=5.1e-08 Score=96.67 Aligned_cols=183 Identities=16% Similarity=0.192 Sum_probs=129.3
Q ss_pred chhhhcCCccCceeeEEeccchhHHHhhcCCcccccccCCCeEEEecCCCCCccccccccccccccceeeccccCcce--
Q 009534 286 LVEELLGLKHLNVLTITLHSFAALQRLLTYPSLQSIVSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEE-- 363 (532)
Q Consensus 286 ~~~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~-- 363 (532)
....+..+++|+.|+++ .+. +..++... .++|++|+++++. +..++...+..+++|+.|+++++. +..
T Consensus 92 ~~~~~~~l~~L~~L~Ls--~n~-l~~l~~~~-----~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~ 161 (330)
T 1xku_A 92 SPGAFAPLVKLERLYLS--KNQ-LKELPEKM-----PKTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNP-LKSSG 161 (330)
T ss_dssp CTTTTTTCTTCCEEECC--SSC-CSBCCSSC-----CTTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSC-CCGGG
T ss_pred CHHHhcCCCCCCEEECC--CCc-CCccChhh-----cccccEEECCCCc-ccccCHhHhcCCccccEEECCCCc-CCccC
Confidence 34566778888888854 321 22333221 2569999999864 777777668889999999999874 322
Q ss_pred eeecccCCccccccccCCCCCccEEEEeCCccccCCchhcCCCcceeeeccccccccccccccccCcCcccCcccccccc
Q 009534 364 MEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTWLILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFAR 443 (532)
Q Consensus 364 l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~ 443 (532)
+.... ...+++|++|++++|.++.+|. ...++|+.|+++++. +..++. ..+..+++
T Consensus 162 ~~~~~----------~~~l~~L~~L~l~~n~l~~l~~-~~~~~L~~L~l~~n~-l~~~~~------------~~~~~l~~ 217 (330)
T 1xku_A 162 IENGA----------FQGMKKLSYIRIADTNITTIPQ-GLPPSLTELHLDGNK-ITKVDA------------ASLKGLNN 217 (330)
T ss_dssp BCTTG----------GGGCTTCCEEECCSSCCCSCCS-SCCTTCSEEECTTSC-CCEECT------------GGGTTCTT
T ss_pred cChhh----------ccCCCCcCEEECCCCccccCCc-cccccCCEEECCCCc-CCccCH------------HHhcCCCC
Confidence 11222 2368999999999998888874 334899999998875 555533 26778899
Q ss_pred cceeeccccccccccCC-CCcCCCCccEEeecCCCCCCCCCCCCCCCCCceeEEecchhhhhh
Q 009534 444 LERLSLGGLENLRSIYP-RALPFPHLKELHVTLCPKLKKLPFDCTSGHERKLIIKGQEEWWNN 505 (532)
Q Consensus 444 L~~L~l~~~~~L~~i~~-~~~~~p~L~~L~i~~C~~L~~lp~~~~~~l~~L~~~~~~~~w~~~ 505 (532)
|+.|+++++. +..++. ....+++|+.|++++| ++..+|...... +.|+..+....-...
T Consensus 218 L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l-~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 218 LAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADH-KYIQVVYLHNNNISA 277 (330)
T ss_dssp CCEEECCSSC-CCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTC-SSCCEEECCSSCCCC
T ss_pred CCEEECCCCc-CceeChhhccCCCCCCEEECCCC-cCccCChhhccC-CCcCEEECCCCcCCc
Confidence 9999999864 666654 5667899999999998 677888876554 667766665544433
No 94
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.76 E-value=5.4e-08 Score=90.64 Aligned_cols=145 Identities=10% Similarity=0.113 Sum_probs=106.9
Q ss_pred CeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCC--chhc
Q 009534 326 PSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVT--WLIL 403 (532)
Q Consensus 326 ~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~--~l~~ 403 (532)
+.+++++ ..++.+|.. ++ ++|+.|+++++ .++.++..... .+++|++|++++|.+..++ .+..
T Consensus 14 ~~v~c~~-~~l~~iP~~-l~--~~l~~L~l~~n-~i~~i~~~~~~----------~l~~L~~L~Ls~N~i~~~~~~~~~~ 78 (220)
T 2v9t_B 14 NIVDCRG-KGLTEIPTN-LP--ETITEIRLEQN-TIKVIPPGAFS----------PYKKLRRIDLSNNQISELAPDAFQG 78 (220)
T ss_dssp TEEECTT-SCCSSCCSS-CC--TTCCEEECCSS-CCCEECTTSST----------TCTTCCEEECCSSCCCEECTTTTTT
T ss_pred CEEEcCC-CCcCcCCCc-cC--cCCCEEECCCC-cCCCcCHhHhh----------CCCCCCEEECCCCcCCCcCHHHhhC
Confidence 4556655 357888764 44 58999999986 67777664444 6899999999999888863 3888
Q ss_pred CCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccccCC-CCcCCCCccEEeecCCCCCCCC
Q 009534 404 APNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIYP-RALPFPHLKELHVTLCPKLKKL 482 (532)
Q Consensus 404 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~-~~~~~p~L~~L~i~~C~~L~~l 482 (532)
+++|++|+++++. +..++. ..+..+++|+.|+++++ .++.++. .+..+++|+.|+++++ +++.+
T Consensus 79 l~~L~~L~Ls~N~-l~~l~~------------~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~ 143 (220)
T 2v9t_B 79 LRSLNSLVLYGNK-ITELPK------------SLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDN-KLQTI 143 (220)
T ss_dssp CSSCCEEECCSSC-CCCCCT------------TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCC
T ss_pred CcCCCEEECCCCc-CCccCH------------hHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCC-cCCEE
Confidence 9999999998764 777765 24678999999999986 5777754 5667999999999997 57777
Q ss_pred CCCCCCCCCceeEEecch
Q 009534 483 PFDCTSGHERKLIIKGQE 500 (532)
Q Consensus 483 p~~~~~~l~~L~~~~~~~ 500 (532)
|......+..|+.++...
T Consensus 144 ~~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 144 AKGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp CTTTTTTCTTCCEEECCS
T ss_pred CHHHHhCCCCCCEEEeCC
Confidence 654333335555554433
No 95
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.75 E-value=2.1e-08 Score=106.10 Aligned_cols=156 Identities=14% Similarity=0.174 Sum_probs=112.3
Q ss_pred cCCccCceeeEEeccchhHHHhhcCCcccccccCCCeEEEecCCCCCcccc--ccccccccccceeeccccCcceeeecc
Q 009534 291 LGLKHLNVLTITLHSFAALQRLLTYPSLQSIVSNTPSLSLTNCRSLSSLSV--LTLASLRHLEALDMRYCKDLEEMEIDY 368 (532)
Q Consensus 291 ~~L~~L~~L~i~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~--~~l~~l~~L~~L~i~~c~~L~~l~~~~ 368 (532)
..+++|+.|+++ .+.....++. ....+++|+.|+++++. +..++. ..+..+++|+.|+++++.-...+|...
T Consensus 321 ~~l~~L~~L~Ls--~n~l~~~~~~---~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~ 394 (520)
T 2z7x_B 321 SKISPFLHLDFS--NNLLTDTVFE---NCGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD 394 (520)
T ss_dssp SSCCCCCEEECC--SSCCCTTTTT---TCCCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCS
T ss_pred hhCCcccEEEeE--CCccChhhhh---hhccCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEECCCCcCCcccccch
Confidence 467788888844 3321111222 22346779999999976 665432 237789999999999975333366543
Q ss_pred cCCccccccccCCCCCccEEEEeCCccccCCchhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceee
Q 009534 369 AGGEVKRIRETHGFFSLHKVSIWGSKLRHVTWLILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLS 448 (532)
Q Consensus 369 ~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~ 448 (532)
.. .+++|++|++++|.++...+....++|+.|++++|. +..++. .+..+++|++|+
T Consensus 395 ~~----------~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~-l~~ip~-------------~~~~l~~L~~L~ 450 (520)
T 2z7x_B 395 CS----------WTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNK-IKSIPK-------------QVVKLEALQELN 450 (520)
T ss_dssp CC----------CCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSC-CCCCCG-------------GGGGCTTCCEEE
T ss_pred hc----------cCccCCEEECcCCCCCcchhhhhcccCCEEECCCCc-ccccch-------------hhhcCCCCCEEE
Confidence 33 689999999999977552211222799999999874 777776 677899999999
Q ss_pred ccccccccccCCC-CcCCCCccEEeecCCC
Q 009534 449 LGGLENLRSIYPR-ALPFPHLKELHVTLCP 477 (532)
Q Consensus 449 l~~~~~L~~i~~~-~~~~p~L~~L~i~~C~ 477 (532)
++++ .++.+|.. ...+++|+.|++++++
T Consensus 451 L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 451 VASN-QLKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp CCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCC-cCCccCHHHhccCCcccEEECcCCC
Confidence 9997 68889886 6678999999999875
No 96
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.73 E-value=1.4e-08 Score=99.93 Aligned_cols=150 Identities=15% Similarity=0.100 Sum_probs=92.5
Q ss_pred ccCCCeEEEecCCCCCccc---cccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCcccc-
Q 009534 322 VSNTPSLSLTNCRSLSSLS---VLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRH- 397 (532)
Q Consensus 322 l~~L~~L~l~~c~~l~~l~---~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~- 397 (532)
+++|++|+++++.--...+ ...+..+++|++|+++++. +..++..... .+++|++|++++|++..
T Consensus 116 ~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~----------~l~~L~~L~Ls~N~l~~~ 184 (310)
T 4glp_A 116 GLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH-SPAFSCEQVR----------AFPALTSLDLSDNPGLGE 184 (310)
T ss_dssp CBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS-SCCCCTTSCC----------CCTTCCEEECCSCTTCHH
T ss_pred CCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC-cchhhHHHhc----------cCCCCCEEECCCCCCccc
Confidence 4567777777755222211 1223456777777777763 4444433332 57888888888885432
Q ss_pred --C---CchhcCCCcceeeeccccccccccccccccCcCcccCcc-cccccccceeecccccccccc-CCCCcCC---CC
Q 009534 398 --V---TWLILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQN-LIPFARLERLSLGGLENLRSI-YPRALPF---PH 467 (532)
Q Consensus 398 --l---~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~L~~i-~~~~~~~---p~ 467 (532)
+ .++..+++|++|++++|. ++.++.. +.. +..+++|++|+++++. +..+ |.....+ ++
T Consensus 185 ~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~----------~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~~~ 252 (310)
T 4glp_A 185 RGLMAALCPHKFPAIQNLALRNTG-METPTGV----------CAALAAAGVQPHSLDLSHNS-LRATVNPSAPRCMWSSA 252 (310)
T ss_dssp HHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHH----------HHHHHHHTCCCSSEECTTSC-CCCCCCSCCSSCCCCTT
T ss_pred hhhhHHHhhhcCCCCCEEECCCCC-CCchHHH----------HHHHHhcCCCCCEEECCCCC-CCccchhhHHhccCcCc
Confidence 2 124677888888887764 4444320 001 3567999999999874 5555 6555555 79
Q ss_pred ccEEeecCCCCCCCCCCCCCCCCCceeE
Q 009534 468 LKELHVTLCPKLKKLPFDCTSGHERKLI 495 (532)
Q Consensus 468 L~~L~i~~C~~L~~lp~~~~~~l~~L~~ 495 (532)
|++|++++| +++.+|......++.|.+
T Consensus 253 L~~L~Ls~N-~l~~lp~~~~~~L~~L~L 279 (310)
T 4glp_A 253 LNSLNLSFA-GLEQVPKGLPAKLRVLDL 279 (310)
T ss_dssp CCCEECCSS-CCCSCCSCCCSCCSCEEC
T ss_pred CCEEECCCC-CCCchhhhhcCCCCEEEC
Confidence 999999887 577888866533444433
No 97
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.72 E-value=3.9e-08 Score=102.01 Aligned_cols=132 Identities=17% Similarity=0.218 Sum_probs=67.2
Q ss_pred ccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCcccc-CC-
Q 009534 322 VSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRH-VT- 399 (532)
Q Consensus 322 l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~-l~- 399 (532)
+++|++|+++++.....++...+..+++|++|+++++. +..++..... .+++|++|++++|.++. ++
T Consensus 53 l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~----------~l~~L~~L~L~~n~l~~~~~~ 121 (455)
T 3v47_A 53 LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ-FLQLETGAFN----------GLANLEVLTLTQCNLDGAVLS 121 (455)
T ss_dssp CTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT-TCEECTTTTT----------TCTTCCEEECTTSCCBTHHHH
T ss_pred CccccEEECcCCcccceECcccccccccCCEEeCCCCc-cCccChhhcc----------CcccCCEEeCCCCCCCccccC
Confidence 45566666666543334544445566666666666653 3333322222 46666666666665543 11
Q ss_pred c--hhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccccC-CCCcCC--CCccEEeec
Q 009534 400 W--LILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIY-PRALPF--PHLKELHVT 474 (532)
Q Consensus 400 ~--l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~-~~~~~~--p~L~~L~i~ 474 (532)
. +..+++|++|+++++. +..+.+ ...+..+++|++|+++++. +..++ .....+ +.|+.|++.
T Consensus 122 ~~~~~~l~~L~~L~L~~n~-l~~~~~-----------~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~~~L~~L~l~ 188 (455)
T 3v47_A 122 GNFFKPLTSLEMLVLRDNN-IKKIQP-----------ASFFLNMRRFHVLDLTFNK-VKSICEEDLLNFQGKHFTLLRLS 188 (455)
T ss_dssp SSTTTTCTTCCEEECCSSB-CCSCCC-----------CGGGGGCTTCCEEECTTCC-BSCCCTTTSGGGTTCEEEEEECT
T ss_pred cccccCcccCCEEECCCCc-cCccCc-----------ccccCCCCcccEEeCCCCc-ccccChhhhhccccccccccccc
Confidence 1 5556666666665544 333322 0014556666666666653 33332 222222 556666666
Q ss_pred CCC
Q 009534 475 LCP 477 (532)
Q Consensus 475 ~C~ 477 (532)
+|.
T Consensus 189 ~n~ 191 (455)
T 3v47_A 189 SIT 191 (455)
T ss_dssp TCB
T ss_pred cCc
Confidence 653
No 98
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.71 E-value=1.1e-07 Score=104.04 Aligned_cols=94 Identities=10% Similarity=0.004 Sum_probs=54.6
Q ss_pred ccCCCeEEEecCCCCCccccccccccccccceeecccc-----------------CcceeeecccCCccccccccCCCCC
Q 009534 322 VSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCK-----------------DLEEMEIDYAGGEVKRIRETHGFFS 384 (532)
Q Consensus 322 l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~-----------------~L~~l~~~~~~~~~~~~~~~~~l~~ 384 (532)
+++|++|+++++. +..++...+..+++|++|++++|. .++.+...........+.....+++
T Consensus 328 l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 406 (680)
T 1ziw_A 328 LKCLEHLNMEDND-IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH 406 (680)
T ss_dssp CTTCCEEECCSCC-BCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTT
T ss_pred CCCCCEEECCCCc-cCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCC
Confidence 4668888887754 555555556777888888877653 2222221111111112223445677
Q ss_pred ccEEEEeCCcccc-CC--chhcCCCcceeeecccc
Q 009534 385 LHKVSIWGSKLRH-VT--WLILAPNLKLIQMYDCR 416 (532)
Q Consensus 385 L~~L~l~~c~L~~-l~--~l~~l~~L~~L~l~~c~ 416 (532)
|++|++++|.+.. +| .+..+++|+.|++++|.
T Consensus 407 L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~ 441 (680)
T 1ziw_A 407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 441 (680)
T ss_dssp CCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS
T ss_pred CCEEeCCCCcCccccCcccccCcccccEEecCCCC
Confidence 7777777775543 43 25667777777777664
No 99
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.69 E-value=5.4e-08 Score=103.98 Aligned_cols=150 Identities=17% Similarity=0.099 Sum_probs=98.4
Q ss_pred ccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCcccc-CCc
Q 009534 322 VSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRH-VTW 400 (532)
Q Consensus 322 l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~-l~~ 400 (532)
+++|++|+++++. +.......+..+++|+.|+++++ .++.++... .....+++|++|++++|.+.. +|.
T Consensus 352 l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~--------~~~~~l~~L~~L~l~~N~l~~~~~~ 421 (562)
T 3a79_B 352 PSSFTFLNFTQNV-FTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVA--------LMTKNMSSLETLDVSLNSLNSHAYD 421 (562)
T ss_dssp CCCCCEEECCSSC-CCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHH--------HTTTTCTTCCEEECTTSCCBSCCSS
T ss_pred CCCceEEECCCCc-cccchhhhhcccCCCCEEECCCC-CcCCcccch--------hhhcCCCCCCEEECCCCcCCCccCh
Confidence 4567777777764 44432233677777888887775 444332100 012257888888888886666 553
Q ss_pred --hhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccccCCCCcCCCCccEEeecCCCC
Q 009534 401 --LILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIYPRALPFPHLKELHVTLCPK 478 (532)
Q Consensus 401 --l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~ 478 (532)
+..+++|+.|++++|.-...++. .+. ++|+.|+++++ +++.+|...+.+++|+.|+++++ +
T Consensus 422 ~~~~~l~~L~~L~l~~n~l~~~~~~-------------~l~--~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~ 484 (562)
T 3a79_B 422 RTCAWAESILVLNLSSNMLTGSVFR-------------CLP--PKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-Q 484 (562)
T ss_dssp CCCCCCTTCCEEECCSSCCCGGGGS-------------SCC--TTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-C
T ss_pred hhhcCcccCCEEECCCCCCCcchhh-------------hhc--CcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-C
Confidence 56678888888877652222222 222 69999999997 78899988889999999999997 6
Q ss_pred CCCCCCCCCCCCCceeEEec
Q 009534 479 LKKLPFDCTSGHERKLIIKG 498 (532)
Q Consensus 479 L~~lp~~~~~~l~~L~~~~~ 498 (532)
++.+|......++.|+..+.
T Consensus 485 l~~l~~~~~~~l~~L~~L~l 504 (562)
T 3a79_B 485 LKSVPDGVFDRLTSLQYIWL 504 (562)
T ss_dssp CCCCCTTSTTTCTTCCCEEC
T ss_pred CCCCCHHHHhcCCCCCEEEe
Confidence 77898762222355555443
No 100
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.68 E-value=5.5e-08 Score=100.99 Aligned_cols=139 Identities=22% Similarity=0.167 Sum_probs=75.6
Q ss_pred cCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCCchh
Q 009534 323 SNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTWLI 402 (532)
Q Consensus 323 ~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~l~ 402 (532)
++|++|+++++. ++.+| .+.++++|++|+++++ .++.+|. .+++|++|++++|.++.+|.+.
T Consensus 131 ~~L~~L~L~~n~-l~~lp--~~~~l~~L~~L~l~~N-~l~~lp~--------------~~~~L~~L~L~~n~l~~l~~~~ 192 (454)
T 1jl5_A 131 PLLEYLGVSNNQ-LEKLP--ELQNSSFLKIIDVDNN-SLKKLPD--------------LPPSLEFIAAGNNQLEELPELQ 192 (454)
T ss_dssp TTCCEEECCSSC-CSSCC--CCTTCTTCCEEECCSS-CCSCCCC--------------CCTTCCEEECCSSCCSSCCCCT
T ss_pred CCCCEEECcCCC-CCCCc--ccCCCCCCCEEECCCC-cCcccCC--------------CcccccEEECcCCcCCcCcccc
Confidence 348888888764 66676 2777888888888776 4444432 2346666666666666666666
Q ss_pred cCCCcceeeeccccccccccccccc------cCcCcccCcccccccccceeeccccccccccCCCCcCCCCccEEeecCC
Q 009534 403 LAPNLKLIQMYDCRCLEEIISLEKL------GEVPSEEMQNLIPFARLERLSLGGLENLRSIYPRALPFPHLKELHVTLC 476 (532)
Q Consensus 403 ~l~~L~~L~l~~c~~l~~i~~~~~~------~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C 476 (532)
.+++|+.|++++|. +..++..... .......-..+..+++|++|+++++ .++.+|. .+++|+.|++++|
T Consensus 193 ~l~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N-~l~~l~~---~~~~L~~L~l~~N 267 (454)
T 1jl5_A 193 NLPFLTAIYADNNS-LKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNN-LLKTLPD---LPPSLEALNVRDN 267 (454)
T ss_dssp TCTTCCEEECCSSC-CSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS-CCSSCCS---CCTTCCEEECCSS
T ss_pred CCCCCCEEECCCCc-CCcCCCCcCcccEEECcCCcCCcccccCCCCCCCEEECCCC-cCCcccc---cccccCEEECCCC
Confidence 66666666666543 3333220000 0000000012445666666666664 3444543 2356666666665
Q ss_pred CCCCCCCCC
Q 009534 477 PKLKKLPFD 485 (532)
Q Consensus 477 ~~L~~lp~~ 485 (532)
. +..+|..
T Consensus 268 ~-l~~l~~~ 275 (454)
T 1jl5_A 268 Y-LTDLPEL 275 (454)
T ss_dssp C-CSCCCCC
T ss_pred c-ccccCcc
Confidence 3 4555543
No 101
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.67 E-value=7.8e-08 Score=95.45 Aligned_cols=130 Identities=23% Similarity=0.241 Sum_probs=67.1
Q ss_pred cCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCCc--
Q 009534 323 SNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTW-- 400 (532)
Q Consensus 323 ~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~-- 400 (532)
++|++|+++++. +..++...+..+++|++|+++++ .+..+|... +++|++|++++|.+..++.
T Consensus 78 ~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~-------------~~~L~~L~l~~n~i~~~~~~~ 142 (332)
T 2ft3_A 78 QHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYISKN-HLVEIPPNL-------------PSSLVELRIHDNRIRKVPKGV 142 (332)
T ss_dssp TTCCEEECCSSC-CCEECGGGSTTCTTCCEEECCSS-CCCSCCSSC-------------CTTCCEEECCSSCCCCCCSGG
T ss_pred CCCcEEECCCCc-cCccCHhHhhCcCCCCEEECCCC-cCCccCccc-------------cccCCEEECCCCccCccCHhH
Confidence 445555555543 44443333555555555555554 233333211 2566666666665555543
Q ss_pred hhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccccCCCCcCCCCccEEeecCCCCCC
Q 009534 401 LILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIYPRALPFPHLKELHVTLCPKLK 480 (532)
Q Consensus 401 l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~ 480 (532)
+..+++|+.|+++++. +..... .+..+..+ +|+.|+++++ .+..+|.... ++|+.|++++| ++.
T Consensus 143 ~~~l~~L~~L~l~~n~-l~~~~~----------~~~~~~~l-~L~~L~l~~n-~l~~l~~~~~--~~L~~L~l~~n-~i~ 206 (332)
T 2ft3_A 143 FSGLRNMNCIEMGGNP-LENSGF----------EPGAFDGL-KLNYLRISEA-KLTGIPKDLP--ETLNELHLDHN-KIQ 206 (332)
T ss_dssp GSSCSSCCEEECCSCC-CBGGGS----------CTTSSCSC-CCSCCBCCSS-BCSSCCSSSC--SSCSCCBCCSS-CCC
T ss_pred hCCCccCCEEECCCCc-cccCCC----------CcccccCC-ccCEEECcCC-CCCccCcccc--CCCCEEECCCC-cCC
Confidence 4556666666665543 221110 01133434 7777777765 3566665433 67888888876 444
Q ss_pred CCC
Q 009534 481 KLP 483 (532)
Q Consensus 481 ~lp 483 (532)
.+|
T Consensus 207 ~~~ 209 (332)
T 2ft3_A 207 AIE 209 (332)
T ss_dssp CCC
T ss_pred ccC
Confidence 444
No 102
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.66 E-value=2.9e-08 Score=88.15 Aligned_cols=111 Identities=23% Similarity=0.250 Sum_probs=87.8
Q ss_pred ccccccceeeccccCcc--eeeecccCCccccccccCCCCCccEEEEeCCccccCCchhcCCCcceeeecccccccc-cc
Q 009534 346 SLRHLEALDMRYCKDLE--EMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTWLILAPNLKLIQMYDCRCLEE-II 422 (532)
Q Consensus 346 ~l~~L~~L~i~~c~~L~--~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~l~~l~~L~~L~l~~c~~l~~-i~ 422 (532)
..++|+.|++++|. +. .+|... ..+++|++|++++|.++.++.+..+++|+.|++++|. +.. ++
T Consensus 22 ~~~~L~~L~l~~n~-l~~~~i~~~~-----------~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~ 88 (168)
T 2ell_A 22 TPAAVRELVLDNCK-SNDGKIEGLT-----------AEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENR-IFGGLD 88 (168)
T ss_dssp CTTSCSEEECCSCB-CBTTBCSSCC-----------GGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCC-CCSCCC
T ss_pred CcccCCEEECCCCC-CChhhHHHHH-----------HhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCc-CchHHH
Confidence 34789999999985 44 454432 2589999999999988888778999999999999876 454 43
Q ss_pred ccccccCcCcccCcccccccccceeeccccccccccC--CCCcCCCCccEEeecCCCCCCCCCC
Q 009534 423 SLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIY--PRALPFPHLKELHVTLCPKLKKLPF 484 (532)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~--~~~~~~p~L~~L~i~~C~~L~~lp~ 484 (532)
. .+..+++|++|+++++ .++.++ .....+++|+.|++++|+ +..+|.
T Consensus 89 ~-------------~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~ 137 (168)
T 2ell_A 89 M-------------LAEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLND 137 (168)
T ss_dssp H-------------HHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTT
T ss_pred H-------------HHhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHH
Confidence 3 5566999999999997 677776 466789999999999984 556654
No 103
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.64 E-value=5.8e-08 Score=108.95 Aligned_cols=84 Identities=15% Similarity=0.173 Sum_probs=46.1
Q ss_pred ccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCcccc-CCc
Q 009534 322 VSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRH-VTW 400 (532)
Q Consensus 322 l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~-l~~ 400 (532)
+++|++|++++|.....++...+.++++|++|+++++ .+..++..... .+++|++|++++|.+.. ++.
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N-~l~~~~p~~~~----------~l~~L~~L~Ls~n~l~~~~~~ 115 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS-KIYFLHPDAFQ----------GLFHLFELRLYFCGLSDAVLK 115 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC-CCCEECTTSSC----------SCSSCCCEECTTCCCSSCCST
T ss_pred cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC-cCcccCHhHcc----------CCcccCEeeCcCCCCCccccc
Confidence 4556667776665555664445666666666666665 34444333322 45566666666554443 221
Q ss_pred ---hhcCCCcceeeecccc
Q 009534 401 ---LILAPNLKLIQMYDCR 416 (532)
Q Consensus 401 ---l~~l~~L~~L~l~~c~ 416 (532)
+..+++|++|++++|.
T Consensus 116 ~~~~~~L~~L~~L~Ls~N~ 134 (844)
T 3j0a_A 116 DGYFRNLKALTRLDLSKNQ 134 (844)
T ss_dssp TCCCSSCSSCCEEEEESCC
T ss_pred CccccccCCCCEEECCCCc
Confidence 4555566666665543
No 104
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.64 E-value=8.2e-08 Score=102.58 Aligned_cols=155 Identities=14% Similarity=0.112 Sum_probs=112.7
Q ss_pred cCCccCceeeEEeccchhHHHhhcCCcccccccCCCeEEEecCCCCCcccc--ccccccccccceeeccccCcceeeecc
Q 009534 291 LGLKHLNVLTITLHSFAALQRLLTYPSLQSIVSNTPSLSLTNCRSLSSLSV--LTLASLRHLEALDMRYCKDLEEMEIDY 368 (532)
Q Consensus 291 ~~L~~L~~L~i~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~--~~l~~l~~L~~L~i~~c~~L~~l~~~~ 368 (532)
..+++|+.|+++ .+.-....+. ....+++|+.|+++++. ++.++. ..+..+++|+.|+++++.-...++...
T Consensus 350 ~~l~~L~~L~l~--~n~l~~~~~~---~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 423 (562)
T 3a79_B 350 PSPSSFTFLNFT--QNVFTDSVFQ---GCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT 423 (562)
T ss_dssp SSCCCCCEEECC--SSCCCTTTTT---TCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCC
T ss_pred cCCCCceEEECC--CCccccchhh---hhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEECCCCcCCCccChhh
Confidence 567788888844 3321111221 22346779999999964 776542 237789999999999975333366554
Q ss_pred cCCccccccccCCCCCccEEEEeCCccccCCchhcC-CCcceeeeccccccccccccccccCcCcccCccccccccccee
Q 009534 369 AGGEVKRIRETHGFFSLHKVSIWGSKLRHVTWLILA-PNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERL 447 (532)
Q Consensus 369 ~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~l~~l-~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L 447 (532)
.. .+++|++|++++|+++... ...+ ++|+.|+++++ .+..++. .+..+++|+.|
T Consensus 424 ~~----------~l~~L~~L~l~~n~l~~~~-~~~l~~~L~~L~L~~N-~l~~ip~-------------~~~~l~~L~~L 478 (562)
T 3a79_B 424 CA----------WAESILVLNLSSNMLTGSV-FRCLPPKVKVLDLHNN-RIMSIPK-------------DVTHLQALQEL 478 (562)
T ss_dssp CC----------CCTTCCEEECCSSCCCGGG-GSSCCTTCSEEECCSS-CCCCCCT-------------TTTSSCCCSEE
T ss_pred hc----------CcccCCEEECCCCCCCcch-hhhhcCcCCEEECCCC-cCcccCh-------------hhcCCCCCCEE
Confidence 43 6899999999999776522 1233 79999999887 5788876 66689999999
Q ss_pred eccccccccccCCC-CcCCCCccEEeecCCC
Q 009534 448 SLGGLENLRSIYPR-ALPFPHLKELHVTLCP 477 (532)
Q Consensus 448 ~l~~~~~L~~i~~~-~~~~p~L~~L~i~~C~ 477 (532)
+++++ +++.+|.. ...+++|+.|+++++|
T Consensus 479 ~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 479 NVASN-QLKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp ECCSS-CCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred ECCCC-CCCCCCHHHHhcCCCCCEEEecCCC
Confidence 99986 68889886 6789999999999875
No 105
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.63 E-value=2.5e-08 Score=89.35 Aligned_cols=133 Identities=9% Similarity=0.116 Sum_probs=95.9
Q ss_pred cCCccCceeeEEeccchhHHHhhcCCcccccccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccC
Q 009534 291 LGLKHLNVLTITLHSFAALQRLLTYPSLQSIVSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAG 370 (532)
Q Consensus 291 ~~L~~L~~L~i~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~ 370 (532)
..+.+|+.|+++ ++ .+..++ ......++|+.|+++++. ++.+ ..+..+++|++|+++++ .+..++.....
T Consensus 16 ~~~~~L~~L~l~--~n-~l~~i~---~~~~~~~~L~~L~Ls~N~-l~~~--~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~ 85 (176)
T 1a9n_A 16 TNAVRDRELDLR--GY-KIPVIE---NLGATLDQFDAIDFSDNE-IRKL--DGFPLLRRLKTLLVNNN-RICRIGEGLDQ 85 (176)
T ss_dssp ECTTSCEEEECT--TS-CCCSCC---CGGGGTTCCSEEECCSSC-CCEE--CCCCCCSSCCEEECCSS-CCCEECSCHHH
T ss_pred CCcCCceEEEee--CC-CCchhH---HhhhcCCCCCEEECCCCC-CCcc--cccccCCCCCEEECCCC-cccccCcchhh
Confidence 456788888843 43 222332 222333479999999974 7777 34888999999999997 57777655433
Q ss_pred CccccccccCCCCCccEEEEeCCccccCCc---hhcCCCcceeeeccccccccccccccccCcCcccCccccccccccee
Q 009534 371 GEVKRIRETHGFFSLHKVSIWGSKLRHVTW---LILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERL 447 (532)
Q Consensus 371 ~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~---l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L 447 (532)
.+++|++|++++|.+..+|. +..+++|+.|++++++ +..++... ...+..+|+|+.|
T Consensus 86 ----------~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~---------~~~~~~l~~L~~L 145 (176)
T 1a9n_A 86 ----------ALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYR---------LYVIYKVPQVRVL 145 (176)
T ss_dssp ----------HCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHH---------HHHHHHCTTCSEE
T ss_pred ----------cCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHH---------HHHHHHCCcccee
Confidence 58999999999998888764 7889999999999876 55554300 0026779999999
Q ss_pred eccccc
Q 009534 448 SLGGLE 453 (532)
Q Consensus 448 ~l~~~~ 453 (532)
++.+++
T Consensus 146 d~~~n~ 151 (176)
T 1a9n_A 146 DFQKVK 151 (176)
T ss_dssp TTEECC
T ss_pred CCCcCC
Confidence 998864
No 106
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.62 E-value=9.5e-08 Score=107.19 Aligned_cols=164 Identities=17% Similarity=0.136 Sum_probs=112.7
Q ss_pred chhhhcCCccCceeeEEeccchhHHHhhcCCcccccccCCCeEEEecCCCCCccccccccccccccceeeccccCcceee
Q 009534 286 LVEELLGLKHLNVLTITLHSFAALQRLLTYPSLQSIVSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEME 365 (532)
Q Consensus 286 ~~~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~ 365 (532)
....+..+++|+.|+++ .+.....+. +.....+++|++|+|+++. +..++...+.++++|+.|++++|.-...++
T Consensus 40 ~~~~~~~l~~L~~LdLs--~n~~~~~i~--~~~f~~L~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~ 114 (844)
T 3j0a_A 40 TASSFPFLEQLQLLELG--SQYTPLTID--KEAFRNLPNLRILDLGSSK-IYFLHPDAFQGLFHLFELRLYFCGLSDAVL 114 (844)
T ss_dssp CSSSCSSCCSCSEEEEC--TTCCCCEEC--TTTTSSCTTCCEEECTTCC-CCEECTTSSCSCSSCCCEECTTCCCSSCCS
T ss_pred ChhHCcccccCeEEeCC--CCCCccccC--HHHhcCCCCCCEEECCCCc-CcccCHhHccCCcccCEeeCcCCCCCcccc
Confidence 44567788999999954 442222221 1122346789999999975 777765669999999999999984333233
Q ss_pred ec-ccCCccccccccCCCCCccEEEEeCCccccCC---chhcCCCcceeeeccccccccccccccccCcCcccCcccccc
Q 009534 366 ID-YAGGEVKRIRETHGFFSLHKVSIWGSKLRHVT---WLILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPF 441 (532)
Q Consensus 366 ~~-~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~---~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~ 441 (532)
.. +. ..+++|++|++++|.++.++ .++.+++|++|+++++. +..+.. ..+..+
T Consensus 115 ~~~~~----------~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~-i~~~~~------------~~l~~l 171 (844)
T 3j0a_A 115 KDGYF----------RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ-IFLVCE------------HELEPL 171 (844)
T ss_dssp TTCCC----------SSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC-CCCCCS------------GGGHHH
T ss_pred cCccc----------cccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc-CCeeCH------------HHcccc
Confidence 22 22 36999999999999777753 37899999999998764 444322 144445
Q ss_pred --cccceeeccccccccccCCCCcCCCC------ccEEeecCCC
Q 009534 442 --ARLERLSLGGLENLRSIYPRALPFPH------LKELHVTLCP 477 (532)
Q Consensus 442 --~~L~~L~l~~~~~L~~i~~~~~~~p~------L~~L~i~~C~ 477 (532)
++|+.|++.++.--...+.....++. |+.|++++|.
T Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 215 (844)
T 3j0a_A 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNG 215 (844)
T ss_dssp HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCC
T ss_pred cCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCc
Confidence 78899998887655545544444444 8899998874
No 107
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.62 E-value=7.1e-08 Score=102.85 Aligned_cols=119 Identities=22% Similarity=0.242 Sum_probs=93.3
Q ss_pred CCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCCchhc
Q 009534 324 NTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTWLIL 403 (532)
Q Consensus 324 ~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~l~~ 403 (532)
+|+.|+++++ .++.+|. +..+++|+.|+++++ .+..+|.... .+++|++|++++|.++.+|.++.
T Consensus 442 ~L~~L~Ls~n-~l~~lp~--~~~l~~L~~L~Ls~N-~l~~lp~~~~-----------~l~~L~~L~Ls~N~l~~lp~l~~ 506 (567)
T 1dce_A 442 DVRVLHLAHK-DLTVLCH--LEQLLLVTHLDLSHN-RLRALPPALA-----------ALRCLEVLQASDNALENVDGVAN 506 (567)
T ss_dssp TCSEEECTTS-CCSSCCC--GGGGTTCCEEECCSS-CCCCCCGGGG-----------GCTTCCEEECCSSCCCCCGGGTT
T ss_pred CceEEEecCC-CCCCCcC--ccccccCcEeecCcc-cccccchhhh-----------cCCCCCEEECCCCCCCCCcccCC
Confidence 4889999986 5788874 888999999999986 5666766443 58999999999998888888889
Q ss_pred CCCcceeeeccccccccc--cccccccCcCcccCcccccccccceeeccccccccccCCCCc----CCCCccEEe
Q 009534 404 APNLKLIQMYDCRCLEEI--ISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIYPRAL----PFPHLKELH 472 (532)
Q Consensus 404 l~~L~~L~l~~c~~l~~i--~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~~~~----~~p~L~~L~ 472 (532)
+++|+.|+++++. +..+ +. .+..+++|+.|++++++ +..+|.... .+|+|+.|+
T Consensus 507 l~~L~~L~Ls~N~-l~~~~~p~-------------~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 507 LPRLQELLLCNNR-LQQSAAIQ-------------PLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CSSCCEEECCSSC-CCSSSTTG-------------GGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCcEEECCCCC-CCCCCCcH-------------HHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccC
Confidence 9999999998764 6666 44 78889999999999864 666665332 278888775
No 108
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.61 E-value=8.5e-08 Score=94.36 Aligned_cols=179 Identities=16% Similarity=0.146 Sum_probs=118.8
Q ss_pred CCccCceeeEEeccchhHHHhhcCCcccccccCCCeEEEecCCCCCcccccccccc-----ccccceeeccccCcceeee
Q 009534 292 GLKHLNVLTITLHSFAALQRLLTYPSLQSIVSNTPSLSLTNCRSLSSLSVLTLASL-----RHLEALDMRYCKDLEEMEI 366 (532)
Q Consensus 292 ~L~~L~~L~i~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~l-----~~L~~L~i~~c~~L~~l~~ 366 (532)
.+++|+.|+++-.... ..++... ....+++|++|+++++. +..+| ..+..+ ++|++|+++++ .+..++.
T Consensus 93 ~l~~L~~L~L~~n~l~--~~~~~~~-~~~~l~~L~~L~Ls~N~-l~~~~-~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~ 166 (312)
T 1wwl_A 93 GISGLQELTLENLEVT--GTAPPPL-LEATGPDLNILNLRNVS-WATRD-AWLAELQQWLKPGLKVLSIAQA-HSLNFSC 166 (312)
T ss_dssp TTSCCCEEEEEEEBCB--SCCCCCS-SSCCSCCCSEEEEESCB-CSSSS-SHHHHHHTTCCTTCCEEEEESC-SCCCCCT
T ss_pred CcCCccEEEccCCccc--chhHHHH-HHhcCCCccEEEccCCC-Ccchh-HHHHHHHHhhcCCCcEEEeeCC-CCccchH
Confidence 5788999996533221 1222211 11345779999999965 66665 336666 89999999987 4555554
Q ss_pred cccCCccccccccCCCCCccEEEEeCCcccc---CC-ch--hcCCCcceeeeccccccccccccccccCcCcccCccccc
Q 009534 367 DYAGGEVKRIRETHGFFSLHKVSIWGSKLRH---VT-WL--ILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIP 440 (532)
Q Consensus 367 ~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~---l~-~l--~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~ 440 (532)
.... .+++|++|++++|++.. ++ .+ ..+++|++|++++|. +..++... ...+..
T Consensus 167 ~~~~----------~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~---------~~~~~~ 226 (312)
T 1wwl_A 167 EQVR----------VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVC---------SALAAA 226 (312)
T ss_dssp TTCC----------CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHH---------HHHHHT
T ss_pred HHhc----------cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHH---------HHHHhc
Confidence 4433 68999999999996543 12 23 788999999998874 55332200 012345
Q ss_pred ccccceeeccccccccccC-C-CCcCCCCccEEeecCCCCCCCCCCCCCCCCCceeEEecchh
Q 009534 441 FARLERLSLGGLENLRSIY-P-RALPFPHLKELHVTLCPKLKKLPFDCTSGHERKLIIKGQEE 501 (532)
Q Consensus 441 ~~~L~~L~l~~~~~L~~i~-~-~~~~~p~L~~L~i~~C~~L~~lp~~~~~~l~~L~~~~~~~~ 501 (532)
+++|+.|+++++. +...+ . ....+++|+.|++++| +++.+|.... .+|+..+...+
T Consensus 227 l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~---~~L~~L~Ls~N 284 (312)
T 1wwl_A 227 RVQLQGLDLSHNS-LRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPKGLP---AKLSVLDLSYN 284 (312)
T ss_dssp TCCCSEEECTTSC-CCSSCCCSCCCCCTTCCEEECTTS-CCSSCCSSCC---SEEEEEECCSS
T ss_pred CCCCCEEECCCCc-CCcccchhhhhhcCCCCEEECCCC-ccChhhhhcc---CCceEEECCCC
Confidence 7899999999874 55543 2 3345799999999998 4678888665 56666666544
No 109
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.60 E-value=1.5e-08 Score=87.99 Aligned_cols=111 Identities=18% Similarity=0.197 Sum_probs=87.7
Q ss_pred ccccccceeeccccCcc--eeeecccCCccccccccCCCCCccEEEEeCCccccCCchhcCCCcceeeecccccccc-cc
Q 009534 346 SLRHLEALDMRYCKDLE--EMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTWLILAPNLKLIQMYDCRCLEE-II 422 (532)
Q Consensus 346 ~l~~L~~L~i~~c~~L~--~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~l~~l~~L~~L~l~~c~~l~~-i~ 422 (532)
..++|+.|++++|. +. .++... ..+++|++|++++|.++.++.+..+++|+.|++++|. +.. ++
T Consensus 15 ~~~~l~~L~l~~n~-l~~~~~~~~~-----------~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~-i~~~~~ 81 (149)
T 2je0_A 15 TPSDVKELVLDNSR-SNEGKLEGLT-----------DEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNR-VSGGLE 81 (149)
T ss_dssp CGGGCSEEECTTCB-CBTTBCCSCC-----------TTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSC-CCSCTH
T ss_pred CCccCeEEEccCCc-CChhHHHHHH-----------hhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCc-ccchHH
Confidence 34789999999985 44 455422 3589999999999988888778999999999998876 444 44
Q ss_pred ccccccCcCcccCcccccccccceeeccccccccccC--CCCcCCCCccEEeecCCCCCCCCCC
Q 009534 423 SLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIY--PRALPFPHLKELHVTLCPKLKKLPF 484 (532)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~--~~~~~~p~L~~L~i~~C~~L~~lp~ 484 (532)
. .+..+++|++|+++++. ++.++ .....+++|+.|++++| .+..+|.
T Consensus 82 ~-------------~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~ 130 (149)
T 2je0_A 82 V-------------LAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNC-EVTNLND 130 (149)
T ss_dssp H-------------HHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTC-GGGGSTT
T ss_pred H-------------HhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCC-cccchHH
Confidence 4 56669999999999974 67664 56778999999999998 5666654
No 110
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.60 E-value=2.3e-07 Score=99.80 Aligned_cols=53 Identities=21% Similarity=0.140 Sum_probs=29.1
Q ss_pred ccccceeeccccccccccCCCCcCCCCccEEeecCCCCCCCCCCCCCCCCCceeEEecc
Q 009534 441 FARLERLSLGGLENLRSIYPRALPFPHLKELHVTLCPKLKKLPFDCTSGHERKLIIKGQ 499 (532)
Q Consensus 441 ~~~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~l~~L~~~~~~ 499 (532)
+++|+.|+++++ +++.+|. .+++|+.|++++| +++.+|...... ++|+..+..
T Consensus 240 l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~l~~l-~~L~~L~L~ 292 (622)
T 3g06_A 240 PSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRN-QLTRLPESLIHL-SSETTVNLE 292 (622)
T ss_dssp CTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCCSCCGGGGGS-CTTCEEECC
T ss_pred CCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCC-CCCcCCHHHhhc-cccCEEEec
Confidence 455666666654 4555554 4566667776666 555666543332 445554443
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.60 E-value=3.1e-07 Score=85.42 Aligned_cols=146 Identities=12% Similarity=0.134 Sum_probs=106.9
Q ss_pred CCeEEEecCCCCCccccccccccccccceeeccccCcceeee-cccCCccccccccCCCCCccEEEEeCCccccCCc--h
Q 009534 325 TPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEI-DYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTW--L 401 (532)
Q Consensus 325 L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~-~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~--l 401 (532)
-+.+++++. .++.+|.. ++ +.++.|+++++ .+..++. .... .+++|++|++++|+++.++. +
T Consensus 13 ~~~l~~s~n-~l~~iP~~-~~--~~~~~L~L~~N-~l~~~~~~~~~~----------~l~~L~~L~L~~N~i~~i~~~~~ 77 (220)
T 2v70_A 13 GTTVDCSNQ-KLNKIPEH-IP--QYTAELRLNNN-EFTVLEATGIFK----------KLPQLRKINFSNNKITDIEEGAF 77 (220)
T ss_dssp TTEEECCSS-CCSSCCSC-CC--TTCSEEECCSS-CCCEECCCCCGG----------GCTTCCEEECCSSCCCEECTTTT
T ss_pred CCEeEeCCC-CcccCccC-CC--CCCCEEEcCCC-cCCccCchhhhc----------cCCCCCEEECCCCcCCEECHHHh
Confidence 457787774 47888764 43 36789999986 5676643 3333 69999999999999888764 8
Q ss_pred hcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeecccccccccc-CCCCcCCCCccEEeecCCCCCC
Q 009534 402 ILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSI-YPRALPFPHLKELHVTLCPKLK 480 (532)
Q Consensus 402 ~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i-~~~~~~~p~L~~L~i~~C~~L~ 480 (532)
..+++|++|+++++. +..++. ..+..+++|++|+++++ .+..+ +..+..+++|+.|+++++ +++
T Consensus 78 ~~l~~L~~L~Ls~N~-l~~~~~------------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~ 142 (220)
T 2v70_A 78 EGASGVNEILLTSNR-LENVQH------------KMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDN-QIT 142 (220)
T ss_dssp TTCTTCCEEECCSSC-CCCCCG------------GGGTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTS-CCC
T ss_pred CCCCCCCEEECCCCc-cCccCH------------hHhcCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCC-cCC
Confidence 899999999998765 666654 25778999999999986 46666 445678999999999997 566
Q ss_pred CC-CCCCCCCCCceeEEecchh
Q 009534 481 KL-PFDCTSGHERKLIIKGQEE 501 (532)
Q Consensus 481 ~l-p~~~~~~l~~L~~~~~~~~ 501 (532)
.+ |..... +.+|+.++...+
T Consensus 143 ~~~~~~~~~-l~~L~~L~L~~N 163 (220)
T 2v70_A 143 TVAPGAFDT-LHSLSTLNLLAN 163 (220)
T ss_dssp CBCTTTTTT-CTTCCEEECCSC
T ss_pred EECHHHhcC-CCCCCEEEecCc
Confidence 66 444333 366666554443
No 112
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.57 E-value=2.7e-07 Score=82.56 Aligned_cols=124 Identities=13% Similarity=0.189 Sum_probs=88.0
Q ss_pred CCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCCc--hh
Q 009534 325 TPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTW--LI 402 (532)
Q Consensus 325 L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~--l~ 402 (532)
.+.+++++. ++..+|.. +. ++|+.|+++++ .+..++..... .+++|++|++++|+++.++. +.
T Consensus 9 ~~~l~~~~~-~l~~~p~~-~~--~~l~~L~l~~n-~l~~~~~~~~~----------~l~~L~~L~l~~n~l~~~~~~~~~ 73 (177)
T 2o6r_A 9 GTEIRCNSK-GLTSVPTG-IP--SSATRLELESN-KLQSLPHGVFD----------KLTQLTKLSLSQNQIQSLPDGVFD 73 (177)
T ss_dssp TTEEECCSS-CCSSCCTT-CC--TTCSEEECCSS-CCCCCCTTTTT----------TCTTCSEEECCSSCCCCCCTTTTT
T ss_pred CCEEEecCC-CCccCCCC-CC--CCCcEEEeCCC-cccEeCHHHhc----------CcccccEEECCCCcceEeChhHcc
Confidence 456666653 46777643 32 57888888875 45555554433 57889999998888888765 57
Q ss_pred cCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccccCCCC-cCCCCccEEeecCCC
Q 009534 403 LAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIYPRA-LPFPHLKELHVTLCP 477 (532)
Q Consensus 403 ~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~~~-~~~p~L~~L~i~~C~ 477 (532)
.+++|+.|+++++. +..++. ..+..+++|++|+++++ .++.++... ..+++|+.|++.+++
T Consensus 74 ~l~~L~~L~l~~N~-l~~~~~------------~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 74 KLTKLTILYLHENK-LQSLPN------------GVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp TCTTCCEEECCSSC-CCCCCT------------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCccCEEECCCCC-ccccCH------------HHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence 78889999987754 565554 24567888999998886 677777754 458888888888874
No 113
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.57 E-value=1.3e-07 Score=103.46 Aligned_cols=158 Identities=16% Similarity=0.221 Sum_probs=109.6
Q ss_pred ccCceeeEEeccchhHHHhhcCCcccccccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCcc
Q 009534 294 KHLNVLTITLHSFAALQRLLTYPSLQSIVSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEV 373 (532)
Q Consensus 294 ~~L~~L~i~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~ 373 (532)
++++.|+++-.. +..++. .....+++|++|+++++. +..++...+.++++|+.|+++++ .+..++.....
T Consensus 25 ~~l~~L~Ls~n~---l~~~~~--~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~--- 94 (680)
T 1ziw_A 25 TNITVLNLTHNQ---LRRLPA--ANFTRYSQLTSLDVGFNT-ISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFA--- 94 (680)
T ss_dssp TTCSEEECCSSC---CCCCCG--GGGGGGTTCSEEECCSSC-CCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTT---
T ss_pred CCCcEEECCCCC---CCCcCH--HHHhCCCcCcEEECCCCc-cCccCHHHHhcccCcCEEECCCC-ccCccChhhhc---
Confidence 578888854222 122211 112235779999999864 66665566788899999999887 56666654333
Q ss_pred ccccccCCCCCccEEEEeCCccccCC--chhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccc
Q 009534 374 KRIRETHGFFSLHKVSIWGSKLRHVT--WLILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGG 451 (532)
Q Consensus 374 ~~~~~~~~l~~L~~L~l~~c~L~~l~--~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 451 (532)
.+++|++|++++|++..++ .+..+++|++|++++|. +..++. ..+..+++|++|++.+
T Consensus 95 -------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~------------~~~~~l~~L~~L~L~~ 154 (680)
T 1ziw_A 95 -------FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKL------------GTQVQLENLQELLLSN 154 (680)
T ss_dssp -------TCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSC-CSCCCC------------CSSSCCTTCCEEECCS
T ss_pred -------cCCCCCEEECCCCccCccChhHccccCCCCEEECCCCc-ccccCc------------hhhcccccCCEEEccC
Confidence 6899999999999888876 37889999999998875 444432 2567789999999998
Q ss_pred cccccccCCC---CcCCCCccEEeecCCCCCCCCC
Q 009534 452 LENLRSIYPR---ALPFPHLKELHVTLCPKLKKLP 483 (532)
Q Consensus 452 ~~~L~~i~~~---~~~~p~L~~L~i~~C~~L~~lp 483 (532)
+ .++.++.. ...+++|+.|++++| +++.++
T Consensus 155 n-~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~ 187 (680)
T 1ziw_A 155 N-KIQALKSEELDIFANSSLKKLELSSN-QIKEFS 187 (680)
T ss_dssp S-CCCCBCHHHHGGGTTCEESEEECTTC-CCCCBC
T ss_pred C-cccccCHHHhhccccccccEEECCCC-cccccC
Confidence 6 35555432 235689999999987 444443
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.55 E-value=5.5e-08 Score=97.88 Aligned_cols=130 Identities=15% Similarity=0.153 Sum_probs=95.5
Q ss_pred cccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCC-
Q 009534 321 IVSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVT- 399 (532)
Q Consensus 321 ~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~- 399 (532)
.+++|+.|+|+++ .+..++...+..+++|++|+++++ .++.++..... .+++|++|+|++|.+..++
T Consensus 62 ~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~----------~l~~L~~L~L~~N~i~~~~~ 129 (361)
T 2xot_A 62 RLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFS----------DLQALEVLLLYNNHIVVVDR 129 (361)
T ss_dssp CCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTT----------TCTTCCEEECCSSCCCEECT
T ss_pred cccccCEEECCCC-cCCccChhhccCCCCCCEEECCCC-cCCcCCHHHhC----------CCcCCCEEECCCCcccEECH
Confidence 3577999999985 488888777889999999999986 57777665544 6899999999999888764
Q ss_pred -chhcCCCcceeeeccccccccccccccccCcCcccCccc---ccccccceeeccccccccccCC-CCcCCCC--ccEEe
Q 009534 400 -WLILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNL---IPFARLERLSLGGLENLRSIYP-RALPFPH--LKELH 472 (532)
Q Consensus 400 -~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~L~~i~~-~~~~~p~--L~~L~ 472 (532)
.+..+++|+.|+++++. +..++. ..+ ..+++|+.|+|+++ .++.++. ....++. |+.|+
T Consensus 130 ~~~~~l~~L~~L~L~~N~-l~~l~~------------~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~~~l~~l~ 195 (361)
T 2xot_A 130 NAFEDMAQLQKLYLSQNQ-ISRFPV------------ELIKDGNKLPKLMLLDLSSN-KLKKLPLTDLQKLPAWVKNGLY 195 (361)
T ss_dssp TTTTTCTTCCEEECCSSC-CCSCCG------------GGTC----CTTCCEEECCSS-CCCCCCHHHHHHSCHHHHTTEE
T ss_pred HHhCCcccCCEEECCCCc-CCeeCH------------HHhcCcccCCcCCEEECCCC-CCCccCHHHhhhccHhhcceEE
Confidence 37889999999998754 666655 122 56899999999885 5666664 2334554 36666
Q ss_pred ecCC
Q 009534 473 VTLC 476 (532)
Q Consensus 473 i~~C 476 (532)
+.+.
T Consensus 196 l~~N 199 (361)
T 2xot_A 196 LHNN 199 (361)
T ss_dssp CCSS
T ss_pred ecCC
Confidence 6653
No 115
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.51 E-value=2.6e-07 Score=98.25 Aligned_cols=134 Identities=17% Similarity=0.128 Sum_probs=78.8
Q ss_pred ccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCCch
Q 009534 322 VSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTWL 401 (532)
Q Consensus 322 l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~l 401 (532)
+++|+.|+++++ .++.+|. ++. +|+.|+++++ .+..+|. .+++|++|++++|.++.+|.
T Consensus 99 l~~L~~L~Ls~N-~l~~ip~--l~~--~L~~L~Ls~N-~l~~lp~--------------~l~~L~~L~Ls~N~l~~lp~- 157 (571)
T 3cvr_A 99 PASLEYLDACDN-RLSTLPE--LPA--SLKHLDVDNN-QLTMLPE--------------LPALLEYINADNNQLTMLPE- 157 (571)
T ss_dssp CTTCCEEECCSS-CCSCCCC--CCT--TCCEEECCSS-CCSCCCC--------------CCTTCCEEECCSSCCSCCCC-
T ss_pred cCCCCEEEccCC-CCCCcch--hhc--CCCEEECCCC-cCCCCCC--------------cCccccEEeCCCCccCcCCC-
Confidence 355777777775 3666664 443 7777777765 3444433 26677777777777776664
Q ss_pred hcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccccCCCCcCCCCc-------cEEeec
Q 009534 402 ILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIYPRALPFPHL-------KELHVT 474 (532)
Q Consensus 402 ~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~~~~~~p~L-------~~L~i~ 474 (532)
.+++|+.|++++|. +..++. +. ++|+.|+++++ +++.+|. +.. +| +.|+++
T Consensus 158 -~l~~L~~L~Ls~N~-L~~lp~--------------l~--~~L~~L~Ls~N-~L~~lp~-~~~--~L~~~~~~L~~L~Ls 215 (571)
T 3cvr_A 158 -LPTSLEVLSVRNNQ-LTFLPE--------------LP--ESLEALDVSTN-LLESLPA-VPV--RNHHSEETEIFFRCR 215 (571)
T ss_dssp -CCTTCCEEECCSSC-CSCCCC--------------CC--TTCCEEECCSS-CCSSCCC-CC----------CCEEEECC
T ss_pred -cCCCcCEEECCCCC-CCCcch--------------hh--CCCCEEECcCC-CCCchhh-HHH--hhhcccccceEEecC
Confidence 56777777776654 444322 21 66777777765 4666665 222 55 777777
Q ss_pred CCCCCCCCCCCCCCCCCceeEEecch
Q 009534 475 LCPKLKKLPFDCTSGHERKLIIKGQE 500 (532)
Q Consensus 475 ~C~~L~~lp~~~~~~l~~L~~~~~~~ 500 (532)
+| +++.+|..... +++|+..+...
T Consensus 216 ~N-~l~~lp~~l~~-l~~L~~L~L~~ 239 (571)
T 3cvr_A 216 EN-RITHIPENILS-LDPTCTIILED 239 (571)
T ss_dssp SS-CCCCCCGGGGG-SCTTEEEECCS
T ss_pred CC-cceecCHHHhc-CCCCCEEEeeC
Confidence 65 56666664444 35555555443
No 116
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.50 E-value=4.7e-07 Score=82.41 Aligned_cols=121 Identities=14% Similarity=0.149 Sum_probs=79.2
Q ss_pred CeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCCc--hhc
Q 009534 326 PSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTW--LIL 403 (532)
Q Consensus 326 ~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~--l~~ 403 (532)
+.+++++ ..++.+|.. ++ ++|+.|++++. .++.+|... ..+++|++|++++|.++.++. +..
T Consensus 13 ~~l~~~~-~~l~~ip~~-~~--~~l~~L~L~~n-~i~~ip~~~-----------~~l~~L~~L~Ls~N~i~~i~~~~f~~ 76 (193)
T 2wfh_A 13 TVVRCSN-KGLKVLPKG-IP--RDVTELYLDGN-QFTLVPKEL-----------SNYKHLTLIDLSNNRISTLSNQSFSN 76 (193)
T ss_dssp TEEECTT-SCCSSCCSC-CC--TTCCEEECCSS-CCCSCCGGG-----------GGCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CEEEcCC-CCCCcCCCC-CC--CCCCEEECCCC-cCchhHHHh-----------hcccCCCEEECCCCcCCEeCHhHccC
Confidence 4455555 346667643 33 47778887775 455555322 257788888888887777654 677
Q ss_pred CCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccccCCC-CcCCCCccEEeecCC
Q 009534 404 APNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIYPR-ALPFPHLKELHVTLC 476 (532)
Q Consensus 404 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~~-~~~~p~L~~L~i~~C 476 (532)
+++|++|+++++. +..++. ..+..+++|+.|++.++ .+..++.. ...+++|+.|++.+.
T Consensus 77 l~~L~~L~Ls~N~-l~~i~~------------~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 77 MTQLLTLILSYNR-LRCIPP------------RTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CTTCCEEECCSSC-CCBCCT------------TTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCCEEECCCCc-cCEeCH------------HHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCC
Confidence 7888888887654 555544 25667788888888774 46677664 445777787777654
No 117
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.50 E-value=7.2e-08 Score=106.03 Aligned_cols=104 Identities=16% Similarity=0.161 Sum_probs=71.4
Q ss_pred ccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCCc-
Q 009534 322 VSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTW- 400 (532)
Q Consensus 322 l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~- 400 (532)
+++|+.|+|+++. +..+|.. +..+++|++|+++++ .+..+|.... .+++|++|+|++|.++.+|.
T Consensus 223 l~~L~~L~Ls~n~-l~~l~~~-~~~l~~L~~L~Ls~N-~l~~lp~~~~-----------~l~~L~~L~Ls~N~l~~lp~~ 288 (727)
T 4b8c_D 223 DQLWHALDLSNLQ-IFNISAN-IFKYDFLTRLYLNGN-SLTELPAEIK-----------NLSNLRVLDLSHNRLTSLPAE 288 (727)
T ss_dssp CCCCCEEECTTSC-CSCCCGG-GGGCCSCSCCBCTTS-CCSCCCGGGG-----------GGTTCCEEECTTSCCSSCCSS
T ss_pred CCCCcEEECCCCC-CCCCChh-hcCCCCCCEEEeeCC-cCcccChhhh-----------CCCCCCEEeCcCCcCCccChh
Confidence 4567778877755 5666654 456777888887776 4555654332 47778888888777777764
Q ss_pred hhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccc
Q 009534 401 LILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLE 453 (532)
Q Consensus 401 l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 453 (532)
++.+++|++|+|++| .+..++. .+..+++|+.|+|++++
T Consensus 289 ~~~l~~L~~L~L~~N-~l~~lp~-------------~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 289 LGSCFQLKYFYFFDN-MVTTLPW-------------EFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp GGGGTTCSEEECCSS-CCCCCCS-------------STTSCTTCCCEECTTSC
T ss_pred hcCCCCCCEEECCCC-CCCccCh-------------hhhcCCCccEEeCCCCc
Confidence 677777888888765 3566655 57777778888877764
No 118
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.49 E-value=4.3e-07 Score=94.23 Aligned_cols=109 Identities=17% Similarity=0.103 Sum_probs=60.6
Q ss_pred CCccEEEEeCCccccCCchhcCCCcceeeeccccccccccccccccC------cCcccCcccccccccceeecccccccc
Q 009534 383 FSLHKVSIWGSKLRHVTWLILAPNLKLIQMYDCRCLEEIISLEKLGE------VPSEEMQNLIPFARLERLSLGGLENLR 456 (532)
Q Consensus 383 ~~L~~L~l~~c~L~~l~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~------~~~~~~~~~~~~~~L~~L~l~~~~~L~ 456 (532)
++|++|++++|.++.+|.+..+++|++|+++++. +..++.....-. ........+..+++|+.|++.++ .+.
T Consensus 131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~-l~~lp~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N-~l~ 208 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNS-LKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNN-SLK 208 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS-CCS
T ss_pred CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCc-CcccCCCcccccEEECcCCcCCcCccccCCCCCCEEECCCC-cCC
Confidence 5777777777766667767777777777776653 444432110000 00000013556677777777765 355
Q ss_pred ccCCCCcCCCCccEEeecCCCCCCCCCCCCCCCCCceeEEecc
Q 009534 457 SIYPRALPFPHLKELHVTLCPKLKKLPFDCTSGHERKLIIKGQ 499 (532)
Q Consensus 457 ~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~l~~L~~~~~~ 499 (532)
.+|.. .++|+.|++++| ++..+|. ... +..|+..+..
T Consensus 209 ~l~~~---~~~L~~L~l~~n-~l~~lp~-~~~-l~~L~~L~l~ 245 (454)
T 1jl5_A 209 KLPDL---PLSLESIVAGNN-ILEELPE-LQN-LPFLTTIYAD 245 (454)
T ss_dssp SCCCC---CTTCCEEECCSS-CCSSCCC-CTT-CTTCCEEECC
T ss_pred cCCCC---cCcccEEECcCC-cCCcccc-cCC-CCCCCEEECC
Confidence 55432 257888888877 5667774 222 3555555444
No 119
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.49 E-value=2.9e-07 Score=82.39 Aligned_cols=106 Identities=16% Similarity=0.155 Sum_probs=85.4
Q ss_pred cCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCCc--
Q 009534 323 SNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTW-- 400 (532)
Q Consensus 323 ~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~-- 400 (532)
++|+.|+++++. +..++...+..+++|++|+++++ .+..++..... .+++|++|++++|+++.++.
T Consensus 28 ~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~----------~l~~L~~L~l~~N~l~~~~~~~ 95 (177)
T 2o6r_A 28 SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFD----------KLTKLTILYLHENKLQSLPNGV 95 (177)
T ss_dssp TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTT----------TCTTCCEEECCSSCCCCCCTTT
T ss_pred CCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCC-cceEeChhHcc----------CCCccCEEECCCCCccccCHHH
Confidence 459999999965 78887776788999999999986 56666655433 68999999999998888765
Q ss_pred hhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccc
Q 009534 401 LILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLE 453 (532)
Q Consensus 401 l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 453 (532)
+..+++|+.|+++++ .+..++. ..+..+++|++|++.+++
T Consensus 96 ~~~l~~L~~L~l~~N-~l~~~~~------------~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 96 FDKLTQLKELALDTN-QLKSVPD------------GIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp TTTCTTCCEEECCSS-CCSCCCT------------TTTTTCTTCCEEECCSSC
T ss_pred hhCCcccCEEECcCC-cceEeCH------------HHhcCCcccCEEEecCCC
Confidence 678999999999876 4676665 245678999999998875
No 120
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.47 E-value=7.4e-07 Score=95.86 Aligned_cols=153 Identities=23% Similarity=0.218 Sum_probs=91.8
Q ss_pred ccCceeeEEeccchhHHHhhcCCcccccccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCcc
Q 009534 294 KHLNVLTITLHSFAALQRLLTYPSLQSIVSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEV 373 (532)
Q Consensus 294 ~~L~~L~i~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~ 373 (532)
++|+.|+++ .+ .+..++. .+++|++|++++|. ++.+|. .+++|++|+++++ .+..++.
T Consensus 61 ~~L~~L~L~--~N-~l~~lp~------~l~~L~~L~Ls~N~-l~~lp~----~l~~L~~L~Ls~N-~l~~l~~------- 118 (622)
T 3g06_A 61 AHITTLVIP--DN-NLTSLPA------LPPELRTLEVSGNQ-LTSLPV----LPPGLLELSIFSN-PLTHLPA------- 118 (622)
T ss_dssp TTCSEEEEC--SC-CCSCCCC------CCTTCCEEEECSCC-CSCCCC----CCTTCCEEEECSC-CCCCCCC-------
T ss_pred CCCcEEEec--CC-CCCCCCC------cCCCCCEEEcCCCc-CCcCCC----CCCCCCEEECcCC-cCCCCCC-------
Confidence 678888854 33 2233332 24669999999865 777765 4678899999876 4555544
Q ss_pred ccccccCCCCCccEEEEeCCccccCCchhcCCCcceeeeccccccccccccccccCcCcccCccc----ccccccceeec
Q 009534 374 KRIRETHGFFSLHKVSIWGSKLRHVTWLILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNL----IPFARLERLSL 449 (532)
Q Consensus 374 ~~~~~~~~l~~L~~L~l~~c~L~~l~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~----~~~~~L~~L~l 449 (532)
.+++|++|++++|+++.+|. .+++|++|++++|. +..++.....-..-.-....+ ..+++|+.|++
T Consensus 119 -------~l~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~L 188 (622)
T 3g06_A 119 -------LPSGLCKLWIFGNQLTSLPV--LPPGLQELSVSDNQ-LASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSV 188 (622)
T ss_dssp -------CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEEC
T ss_pred -------CCCCcCEEECCCCCCCcCCC--CCCCCCEEECcCCc-CCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEEC
Confidence 36788888888888888874 45888888888763 555543110000000000000 22478888888
Q ss_pred cccccccccCCCCcCCCCccEEeecCCCCCCCCC
Q 009534 450 GGLENLRSIYPRALPFPHLKELHVTLCPKLKKLP 483 (532)
Q Consensus 450 ~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp 483 (532)
+++ .++.+|.. +++|+.|++.+| ++..+|
T Consensus 189 s~N-~l~~l~~~---~~~L~~L~L~~N-~l~~l~ 217 (622)
T 3g06_A 189 SDN-QLASLPTL---PSELYKLWAYNN-RLTSLP 217 (622)
T ss_dssp CSS-CCSCCCCC---CTTCCEEECCSS-CCSSCC
T ss_pred CCC-CCCCCCCc---cchhhEEECcCC-cccccC
Confidence 875 46666542 356666666654 344444
No 121
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.46 E-value=4e-07 Score=82.87 Aligned_cols=105 Identities=13% Similarity=0.201 Sum_probs=84.6
Q ss_pred cCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCCc--
Q 009534 323 SNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTW-- 400 (532)
Q Consensus 323 ~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~-- 400 (532)
++|+.|+++++ .++.+| ..+.++++|+.|+++++ .+..++..... .+++|++|++++|.++.++.
T Consensus 31 ~~l~~L~L~~n-~i~~ip-~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~----------~l~~L~~L~Ls~N~l~~i~~~~ 97 (193)
T 2wfh_A 31 RDVTELYLDGN-QFTLVP-KELSNYKHLTLIDLSNN-RISTLSNQSFS----------NMTQLLTLILSYNRLRCIPPRT 97 (193)
T ss_dssp TTCCEEECCSS-CCCSCC-GGGGGCTTCCEEECCSS-CCCCCCTTTTT----------TCTTCCEEECCSSCCCBCCTTT
T ss_pred CCCCEEECCCC-cCchhH-HHhhcccCCCEEECCCC-cCCEeCHhHcc----------CCCCCCEEECCCCccCEeCHHH
Confidence 45999999985 478888 45889999999999986 56666654443 68999999999999888765
Q ss_pred hhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccc
Q 009534 401 LILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLE 453 (532)
Q Consensus 401 l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 453 (532)
+..+++|+.|+++++. +..++. ..+..+++|+.|++.+.+
T Consensus 98 f~~l~~L~~L~L~~N~-l~~~~~------------~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 98 FDGLKSLRLLSLHGND-ISVVPE------------GAFNDLSALSHLAIGANP 137 (193)
T ss_dssp TTTCTTCCEEECCSSC-CCBCCT------------TTTTTCTTCCEEECCSSC
T ss_pred hCCCCCCCEEECCCCC-CCeeCh------------hhhhcCccccEEEeCCCC
Confidence 7889999999998754 666655 256778999999998754
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.44 E-value=8.2e-07 Score=80.65 Aligned_cols=124 Identities=16% Similarity=0.201 Sum_probs=81.7
Q ss_pred CCeEEEecCCCCCccccccccccccccceeeccccCcceeeec-ccCCccccccccCCCCCccEEEEeCCccccCC--ch
Q 009534 325 TPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEID-YAGGEVKRIRETHGFFSLHKVSIWGSKLRHVT--WL 401 (532)
Q Consensus 325 L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~-~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~--~l 401 (532)
-+.+++++. .++.+|.. ++. +|+.|++++. .+..++.. ... .+++|++|++++|.++.++ .+
T Consensus 10 ~~~l~~s~~-~l~~ip~~-~~~--~l~~L~l~~n-~i~~~~~~~~~~----------~l~~L~~L~Ls~N~l~~~~~~~~ 74 (192)
T 1w8a_A 10 GTTVDCTGR-GLKEIPRD-IPL--HTTELLLNDN-ELGRISSDGLFG----------RLPHLVKLELKRNQLTGIEPNAF 74 (192)
T ss_dssp TTEEECTTS-CCSSCCSC-CCT--TCSEEECCSC-CCCSBCCSCSGG----------GCTTCCEEECCSSCCCCBCTTTT
T ss_pred CCEEEcCCC-CcCcCccC-CCC--CCCEEECCCC-cCCccCCccccc----------cCCCCCEEECCCCCCCCcCHhHc
Confidence 356666663 46777754 332 7788888775 45555442 222 5788888888888777753 26
Q ss_pred hcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeecccccccccc-CCCCcCCCCccEEeecCCC
Q 009534 402 ILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSI-YPRALPFPHLKELHVTLCP 477 (532)
Q Consensus 402 ~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i-~~~~~~~p~L~~L~i~~C~ 477 (532)
..+++|+.|+++++. +..++. ..+..+++|++|+++++ ++..+ |.....+++|+.|++.+.+
T Consensus 75 ~~l~~L~~L~Ls~N~-l~~~~~------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 75 EGASHIQELQLGENK-IKEISN------------KMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp TTCTTCCEEECCSCC-CCEECS------------SSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CCcccCCEEECCCCc-CCccCH------------HHhcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 778888888887654 555544 24667788888888875 45544 4455667888888887753
No 123
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.43 E-value=9.2e-08 Score=97.06 Aligned_cols=34 Identities=18% Similarity=0.213 Sum_probs=16.6
Q ss_pred cCCCeEEEecCCCCCc-----cccccccccccccceeeccc
Q 009534 323 SNTPSLSLTNCRSLSS-----LSVLTLASLRHLEALDMRYC 358 (532)
Q Consensus 323 ~~L~~L~l~~c~~l~~-----l~~~~l~~l~~L~~L~i~~c 358 (532)
++|++|+++++. +.. ++.. +..+++|+.|++++|
T Consensus 94 ~~L~~L~Ls~n~-l~~~~~~~l~~~-l~~~~~L~~L~L~~n 132 (386)
T 2ca6_A 94 PKLHTVRLSDNA-FGPTAQEPLIDF-LSKHTPLEHLYLHNN 132 (386)
T ss_dssp TTCCEEECCSCC-CCTTTHHHHHHH-HHHCTTCCEEECCSS
T ss_pred CcccEEECCCCc-CCHHHHHHHHHH-HHhCCCCCEEECcCC
Confidence 446666665543 332 2221 444555555555554
No 124
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.43 E-value=4.5e-07 Score=97.88 Aligned_cols=149 Identities=15% Similarity=0.145 Sum_probs=94.3
Q ss_pred ccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCC-ccccC-C
Q 009534 322 VSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGS-KLRHV-T 399 (532)
Q Consensus 322 l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c-~L~~l-~ 399 (532)
+++|+.+++..+......+...+..+++|+.++++.+ .+..++... ...+++|+.|++++| ....+ |
T Consensus 419 l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n-~l~~~~~~~----------~~~~~~L~~L~Ls~N~~~~~~~~ 487 (635)
T 4g8a_A 419 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGI----------FNGLSSLEVLKMAGNSFQENFLP 487 (635)
T ss_dssp CTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTS-CCEECCTTT----------TTTCTTCCEEECTTCEEGGGEEC
T ss_pred cccccchhhhhcccccccccccccccccccccccccc-ccccccccc----------cccchhhhhhhhhhcccccccCc
Confidence 3445555555544333334334555666666666654 333333322 236788999999988 45543 3
Q ss_pred -chhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccccCCC-CcCCCCccEEeecCCC
Q 009534 400 -WLILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIYPR-ALPFPHLKELHVTLCP 477 (532)
Q Consensus 400 -~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~~-~~~~p~L~~L~i~~C~ 477 (532)
.+..+++|++|++++|. +..+++ ..+..+++|++|+|+++ +++.++.. ...+++|+.|+++++.
T Consensus 488 ~~~~~l~~L~~L~Ls~N~-L~~l~~------------~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~ 553 (635)
T 4g8a_A 488 DIFTELRNLTFLDLSQCQ-LEQLSP------------TAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNH 553 (635)
T ss_dssp SCCTTCTTCCEEECTTSC-CCEECT------------TTTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTSC
T ss_pred hhhhhccccCEEECCCCc-cCCcCh------------HHHcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCCc
Confidence 26788999999998874 666654 36788899999999986 67777664 4568999999999874
Q ss_pred CCCCC-CCCCCCCCCceeEE
Q 009534 478 KLKKL-PFDCTSGHERKLII 496 (532)
Q Consensus 478 ~L~~l-p~~~~~~l~~L~~~ 496 (532)
+..+ |........+|+..
T Consensus 554 -l~~~~~~~l~~l~~~L~~L 572 (635)
T 4g8a_A 554 -IMTSKKQELQHFPSSLAFL 572 (635)
T ss_dssp -CCBCCSSCTTCCCTTCCEE
T ss_pred -CCCCCHHHHHhhhCcCCEE
Confidence 4444 43333222344443
No 125
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.43 E-value=6.7e-09 Score=95.10 Aligned_cols=79 Identities=15% Similarity=0.169 Sum_probs=39.3
Q ss_pred ccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCCch
Q 009534 322 VSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTWL 401 (532)
Q Consensus 322 l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~l 401 (532)
+++|++|+++++. +..+| .+..+++|+.|+++++ .+..+|... ..+++|++|++++|+++.+|.+
T Consensus 47 l~~L~~L~ls~n~-l~~l~--~~~~l~~L~~L~l~~n-~l~~l~~~~-----------~~~~~L~~L~L~~N~l~~l~~~ 111 (198)
T 1ds9_A 47 LKACKHLALSTNN-IEKIS--SLSGMENLRILSLGRN-LIKKIENLD-----------AVADTLEELWISYNQIASLSGI 111 (198)
T ss_dssp TTTCSEEECSEEE-ESCCC--CHHHHTTCCEEEEEEE-EECSCSSHH-----------HHHHHCSEEEEEEEECCCHHHH
T ss_pred CCCCCEEECCCCC-Ccccc--ccccCCCCCEEECCCC-Ccccccchh-----------hcCCcCCEEECcCCcCCcCCcc
Confidence 3445555555542 44444 2555555555555554 233333211 1245555555555555555555
Q ss_pred hcCCCcceeeeccc
Q 009534 402 ILAPNLKLIQMYDC 415 (532)
Q Consensus 402 ~~l~~L~~L~l~~c 415 (532)
..+++|+.|+++++
T Consensus 112 ~~l~~L~~L~l~~N 125 (198)
T 1ds9_A 112 EKLVNLRVLYMSNN 125 (198)
T ss_dssp HHHHHSSEEEESEE
T ss_pred ccCCCCCEEECCCC
Confidence 55555555555544
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.43 E-value=1.2e-08 Score=108.94 Aligned_cols=76 Identities=17% Similarity=0.168 Sum_probs=35.9
Q ss_pred ccEEEEeCCccccCCchhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccccCCCCcC
Q 009534 385 LHKVSIWGSKLRHVTWLILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIYPRALP 464 (532)
Q Consensus 385 L~~L~l~~c~L~~l~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~~~~~ 464 (532)
|+.|++++|+++.+|.++.+++|+.|+++++. +..+|. .+..+++|+.|+++++ .++.+| .+..
T Consensus 443 L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~-l~~lp~-------------~~~~l~~L~~L~Ls~N-~l~~lp-~l~~ 506 (567)
T 1dce_A 443 VRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNR-LRALPP-------------ALAALRCLEVLQASDN-ALENVD-GVAN 506 (567)
T ss_dssp CSEEECTTSCCSSCCCGGGGTTCCEEECCSSC-CCCCCG-------------GGGGCTTCCEEECCSS-CCCCCG-GGTT
T ss_pred ceEEEecCCCCCCCcCccccccCcEeecCccc-ccccch-------------hhhcCCCCCEEECCCC-CCCCCc-ccCC
Confidence 44555555544444444445555555554432 334433 4444555555555443 344444 3444
Q ss_pred CCCccEEeecCC
Q 009534 465 FPHLKELHVTLC 476 (532)
Q Consensus 465 ~p~L~~L~i~~C 476 (532)
+++|+.|++++|
T Consensus 507 l~~L~~L~Ls~N 518 (567)
T 1dce_A 507 LPRLQELLLCNN 518 (567)
T ss_dssp CSSCCEEECCSS
T ss_pred CCCCcEEECCCC
Confidence 455555555443
No 127
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.41 E-value=7.7e-07 Score=90.89 Aligned_cols=107 Identities=14% Similarity=0.085 Sum_probs=76.1
Q ss_pred CcccccHHHHHHHHHHh-c----c--CCceEEEE--ecCCCCcHHHHHHHHHHhccCCC---CCCC-eEEEEEeCCCCCH
Q 009534 147 PTVVGLQSTLDRVWRCL-T----E--EPVGIVGL--YGMGGVGKTTLLTQINNSFLHTP---NNFD-FVIWEVVSRDLQL 213 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L-~----~--~~~~vi~I--~G~gGiGKTtLa~~v~~~~~~~~---~~F~-~~~wv~v~~~~~~ 213 (532)
+.++||+++++.+.+++ . . .....+.| +|++|+||||||+.+++.. ... ..|+ .++|+.+....+.
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRV-SEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHH-HHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHH-HHHHhccCCceeEEEEECCCCCCH
Confidence 57899999999999988 3 1 24455666 9999999999999999876 211 0122 3577777677788
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhc--CCcEEEe
Q 009534 214 GKIQESIAKKIGLCNESWDSKSFDEKAQEIFKTMR--NTKFLIS 255 (532)
Q Consensus 214 ~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlV 255 (532)
..+...++.+++..... ...+.......+.+.+. +++++||
T Consensus 101 ~~~~~~l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~llv 143 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQV-RGAPALDILKALVDNLYVENHYLLVI 143 (412)
T ss_dssp HHHHHHHHHHHTCCCCC-TTCCHHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHhCCCCCC-CCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 99999999998764321 23345566666777664 5566665
No 128
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.39 E-value=9.9e-08 Score=84.62 Aligned_cols=88 Identities=16% Similarity=0.200 Sum_probs=40.6
Q ss_pred CCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCcccccccc-CCCCCccEEEEeCC-cccc--CCc
Q 009534 325 TPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRET-HGFFSLHKVSIWGS-KLRH--VTW 400 (532)
Q Consensus 325 L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~-~~l~~L~~L~l~~c-~L~~--l~~ 400 (532)
|+.|++++|. ++..-...+..+++|+.|++++|..+++-...... .. ...++|++|+|++| +++. +..
T Consensus 63 L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~-------~~~~~~~~L~~L~Ls~C~~ITD~Gl~~ 134 (176)
T 3e4g_A 63 IQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLS-------QLENLQKSMLEMEIISCGNVTDKGIIA 134 (176)
T ss_dssp EEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHH-------TCHHHHHHCCEEEEESCTTCCHHHHHH
T ss_pred EeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHH-------hcccccCCCCEEEcCCCCcCCHHHHHH
Confidence 5556666554 44443333445555555555555544432211111 00 00124555555555 5554 333
Q ss_pred hhcCCCcceeeecccccccc
Q 009534 401 LILAPNLKLIQMYDCRCLEE 420 (532)
Q Consensus 401 l~~l~~L~~L~l~~c~~l~~ 420 (532)
+..+++|++|+|++|+.+.+
T Consensus 135 L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 135 LHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GGGCTTCCEEEEESCTTCCC
T ss_pred HhcCCCCCEEECCCCCCCCc
Confidence 44455555555555554443
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.36 E-value=5.3e-07 Score=99.11 Aligned_cols=119 Identities=14% Similarity=0.083 Sum_probs=93.8
Q ss_pred cccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCCc-hhcCCCcceeeeccccc
Q 009534 339 LSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTW-LILAPNLKLIQMYDCRC 417 (532)
Q Consensus 339 l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~-l~~l~~L~~L~l~~c~~ 417 (532)
++...+..+++|+.|+++++. +..++.... .+++|++|+|++|.++.+|. +..+++|+.|+|+++.
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~-----------~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~- 281 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQ-IFNISANIF-----------KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR- 281 (727)
T ss_dssp -------CCCCCCEEECTTSC-CSCCCGGGG-----------GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-
T ss_pred cChhhhccCCCCcEEECCCCC-CCCCChhhc-----------CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-
Confidence 344457888999999999874 556766554 48999999999998888886 8899999999998876
Q ss_pred cccccccccccCcCcccCcccccccccceeeccccccccccCCCCcCCCCccEEeecCCCCCCCCCC
Q 009534 418 LEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIYPRALPFPHLKELHVTLCPKLKKLPF 484 (532)
Q Consensus 418 l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~ 484 (532)
+..++. .+..+++|++|+|+++ .++.+|..++.+++|+.|++++++--..+|.
T Consensus 282 l~~lp~-------------~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 282 LTSLPA-------------ELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp CSSCCS-------------SGGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred CCccCh-------------hhcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCccCCCChH
Confidence 667766 7888999999999987 6889998888999999999999864444443
No 130
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.35 E-value=5.8e-07 Score=95.56 Aligned_cols=149 Identities=16% Similarity=0.065 Sum_probs=104.6
Q ss_pred cCCccCceeeEEeccchhHHHhhcCCcccccccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccC
Q 009534 291 LGLKHLNVLTITLHSFAALQRLLTYPSLQSIVSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAG 370 (532)
Q Consensus 291 ~~L~~L~~L~i~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~ 370 (532)
..+++|+.|+++ .+ .+..++. +.. +|+.|+++++. +..+|. .+++|+.|+++++ .+..+|.
T Consensus 97 ~~l~~L~~L~Ls--~N-~l~~ip~---l~~---~L~~L~Ls~N~-l~~lp~----~l~~L~~L~Ls~N-~l~~lp~---- 157 (571)
T 3cvr_A 97 ELPASLEYLDAC--DN-RLSTLPE---LPA---SLKHLDVDNNQ-LTMLPE----LPALLEYINADNN-QLTMLPE---- 157 (571)
T ss_dssp CCCTTCCEEECC--SS-CCSCCCC---CCT---TCCEEECCSSC-CSCCCC----CCTTCCEEECCSS-CCSCCCC----
T ss_pred cccCCCCEEEcc--CC-CCCCcch---hhc---CCCEEECCCCc-CCCCCC----cCccccEEeCCCC-ccCcCCC----
Confidence 346788888854 33 2222333 111 59999999964 777775 5789999999986 4655544
Q ss_pred CccccccccCCCCCccEEEEeCCccccCCchhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeecc
Q 009534 371 GEVKRIRETHGFFSLHKVSIWGSKLRHVTWLILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLG 450 (532)
Q Consensus 371 ~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 450 (532)
.+++|++|++++|+++.+|.+. ++|+.|+++++ .+..++. ... . -....+.|+.|+++
T Consensus 158 ----------~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls~N-~L~~lp~-~~~-~-------L~~~~~~L~~L~Ls 215 (571)
T 3cvr_A 158 ----------LPTSLEVLSVRNNQLTFLPELP--ESLEALDVSTN-LLESLPA-VPV-R-------NHHSEETEIFFRCR 215 (571)
T ss_dssp ----------CCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSS-CCSSCCC-CC----------------CCEEEECC
T ss_pred ----------cCCCcCEEECCCCCCCCcchhh--CCCCEEECcCC-CCCchhh-HHH-h-------hhcccccceEEecC
Confidence 3789999999999999988733 89999999876 4666643 000 0 01112334999999
Q ss_pred ccccccccCCCCcCCCCccEEeecCCCCCCC
Q 009534 451 GLENLRSIYPRALPFPHLKELHVTLCPKLKK 481 (532)
Q Consensus 451 ~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~ 481 (532)
++ .++.+|..++.+++|+.|++++++--..
T Consensus 216 ~N-~l~~lp~~l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 216 EN-RITHIPENILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp SS-CCCCCCGGGGGSCTTEEEECCSSSCCHH
T ss_pred CC-cceecCHHHhcCCCCCEEEeeCCcCCCc
Confidence 86 6889998888899999999999875433
No 131
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.35 E-value=1.7e-06 Score=85.59 Aligned_cols=35 Identities=9% Similarity=0.141 Sum_probs=26.7
Q ss_pred ccCCCeEEEecCCCCCccccccccccccccceeeccc
Q 009534 322 VSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYC 358 (532)
Q Consensus 322 l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c 358 (532)
+++|+.|.+.+ .++.++...|.++++|+.|.+.+.
T Consensus 100 ~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n 134 (329)
T 3sb4_A 100 KQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKK 134 (329)
T ss_dssp CTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCS
T ss_pred cCCCcEEECCc--cccchhHHHhhcCcccceEEcCCC
Confidence 47788888887 688888777888888888888653
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.34 E-value=5.1e-08 Score=89.16 Aligned_cols=124 Identities=12% Similarity=0.189 Sum_probs=95.5
Q ss_pred CCeEEEecC-CCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCCc-hh
Q 009534 325 TPSLSLTNC-RSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTW-LI 402 (532)
Q Consensus 325 L~~L~l~~c-~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~-l~ 402 (532)
|+.+.+.+. +.++.+|.. +..+++|++|+++++ .+..++ .. ..+++|++|++++|.++.+|. +.
T Consensus 25 l~~~~l~~~~~~l~~l~~~-~~~l~~L~~L~ls~n-~l~~l~-~~-----------~~l~~L~~L~l~~n~l~~l~~~~~ 90 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDAT-LSTLKACKHLALSTN-NIEKIS-SL-----------SGMENLRILSLGRNLIKKIENLDA 90 (198)
T ss_dssp CSEEECCBCCTTCCCCHHH-HHHTTTCSEEECSEE-EESCCC-CH-----------HHHTTCCEEEEEEEEECSCSSHHH
T ss_pred hheeEeccccCcHhhhhHH-HhcCCCCCEEECCCC-CCcccc-cc-----------ccCCCCCEEECCCCCcccccchhh
Confidence 666677654 346777753 888999999999987 566565 22 358999999999998888876 55
Q ss_pred cCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccccCC--CCcCCCCccEEeecCCCC
Q 009534 403 LAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIYP--RALPFPHLKELHVTLCPK 478 (532)
Q Consensus 403 ~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~--~~~~~p~L~~L~i~~C~~ 478 (532)
.+++|+.|++++| .+..++ .+..+++|+.|++.++ .+..++. ....+++|+.|++.+|+-
T Consensus 91 ~~~~L~~L~L~~N-~l~~l~--------------~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 91 VADTLEELWISYN-QIASLS--------------GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp HHHHCSEEEEEEE-ECCCHH--------------HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred cCCcCCEEECcCC-cCCcCC--------------ccccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 6799999999887 466653 3667899999999986 4665543 456799999999999864
No 133
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.33 E-value=1.6e-07 Score=83.30 Aligned_cols=64 Identities=16% Similarity=0.243 Sum_probs=30.3
Q ss_pred CCCCccEEEEeCC-cccc--CCchhcC----CCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccc
Q 009534 381 GFFSLHKVSIWGS-KLRH--VTWLILA----PNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLE 453 (532)
Q Consensus 381 ~l~~L~~L~l~~c-~L~~--l~~l~~l----~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 453 (532)
.+++|++|+|++| .++. +..+..+ ++|++|+|++|+++++-.. ..+..+++|++|++++|+
T Consensus 83 ~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl------------~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 83 GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI------------IALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH------------HHGGGCTTCCEEEEESCT
T ss_pred CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH------------HHHhcCCCCCEEECCCCC
Confidence 4555555555555 5544 2223322 3455555555555444322 123344555555555555
Q ss_pred ccc
Q 009534 454 NLR 456 (532)
Q Consensus 454 ~L~ 456 (532)
+++
T Consensus 151 ~It 153 (176)
T 3e4g_A 151 GVK 153 (176)
T ss_dssp TCC
T ss_pred CCC
Confidence 444
No 134
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.30 E-value=1.2e-06 Score=79.50 Aligned_cols=105 Identities=19% Similarity=0.307 Sum_probs=81.4
Q ss_pred CCCeEEEecCCCCCccccc-cccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCCc--
Q 009534 324 NTPSLSLTNCRSLSSLSVL-TLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTW-- 400 (532)
Q Consensus 324 ~L~~L~l~~c~~l~~l~~~-~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~-- 400 (532)
+|+.|+++++ .+..++.. .+..+++|++|+++++ .++.++..... .+++|++|++++|+++.++.
T Consensus 30 ~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~----------~l~~L~~L~Ls~N~l~~~~~~~ 97 (192)
T 1w8a_A 30 HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFE----------GASHIQELQLGENKIKEISNKM 97 (192)
T ss_dssp TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTT----------TCTTCCEEECCSCCCCEECSSS
T ss_pred CCCEEECCCC-cCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcC----------CcccCCEEECCCCcCCccCHHH
Confidence 5999999986 47777654 3788999999999986 56655444433 68999999999998888654
Q ss_pred hhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccc
Q 009534 401 LILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLE 453 (532)
Q Consensus 401 l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 453 (532)
+..+++|++|+++++. +..++. ..+..+++|++|++.+.+
T Consensus 98 ~~~l~~L~~L~L~~N~-l~~~~~------------~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 98 FLGLHQLKTLNLYDNQ-ISCVMP------------GSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp STTCTTCCEEECCSSC-CCEECT------------TSSTTCTTCCEEECTTCC
T ss_pred hcCCCCCCEEECCCCc-CCeeCH------------HHhhcCCCCCEEEeCCCC
Confidence 7789999999998764 555533 267788999999998864
No 135
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.30 E-value=6.1e-08 Score=104.07 Aligned_cols=131 Identities=16% Similarity=0.202 Sum_probs=76.7
Q ss_pred ccCCCeEEEecCCCCCcccccccc-ccccccceeeccccCcceeee-cccCCccccccccCCCCCccEEEEeCCccccCC
Q 009534 322 VSNTPSLSLTNCRSLSSLSVLTLA-SLRHLEALDMRYCKDLEEMEI-DYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVT 399 (532)
Q Consensus 322 l~~L~~L~l~~c~~l~~l~~~~l~-~l~~L~~L~i~~c~~L~~l~~-~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~ 399 (532)
+++|++|++++|. +.......+. .+++|+.|++.+|..+..... ... ..+++|++|++++|.+....
T Consensus 104 ~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~----------~~~~~L~~L~L~~~~i~~~~ 172 (594)
T 2p1m_B 104 YTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIA----------ATCRNLKELDLRESDVDDVS 172 (594)
T ss_dssp CTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHH----------HHCTTCCEEECTTCEEECCC
T ss_pred CCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHH----------HhCCCCCEEeCcCCccCCcc
Confidence 5678888888875 4443333343 578888888888864443111 111 14778888888888654421
Q ss_pred --ch----hcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccccCCCCcCCCCccEEee
Q 009534 400 --WL----ILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIYPRALPFPHLKELHV 473 (532)
Q Consensus 400 --~l----~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i 473 (532)
++ ..+++|+.|++++|. ..+.... . ..-...+++|++|++.+|..+..++.....+++|+.|.+
T Consensus 173 ~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~----l----~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l 242 (594)
T 2p1m_B 173 GHWLSHFPDTYTSLVSLNISCLA--SEVSFSA----L----ERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGT 242 (594)
T ss_dssp GGGGGGSCTTCCCCCEEECTTCC--SCCCHHH----H----HHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEEC
T ss_pred hHHHHHHhhcCCcCcEEEecccC--CcCCHHH----H----HHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEccc
Confidence 12 356688888887765 1111100 0 001233688888888877666665555555667777753
No 136
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.19 E-value=1.8e-07 Score=94.92 Aligned_cols=173 Identities=17% Similarity=0.123 Sum_probs=104.6
Q ss_pred chhhhcCCccCceeeEEeccchh--HHHhhcCCcccccc---------cCCCeEEEecCCCCC--cccc--ccccccccc
Q 009534 286 LVEELLGLKHLNVLTITLHSFAA--LQRLLTYPSLQSIV---------SNTPSLSLTNCRSLS--SLSV--LTLASLRHL 350 (532)
Q Consensus 286 ~~~~l~~L~~L~~L~i~~~~~~~--l~~l~~~~~~~~~l---------~~L~~L~l~~c~~l~--~l~~--~~l~~l~~L 350 (532)
+...+..+++|+.|+++-..... ...+... ...+ ++|++|++++|. +. .++. ..+..+++|
T Consensus 114 l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~---l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L 189 (386)
T 2ca6_A 114 LIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA---LQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAKTFQSHRLL 189 (386)
T ss_dssp HHHHHHHCTTCCEEECCSSCCHHHHHHHHHHH---HHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHHHHHHHHHHCTTC
T ss_pred HHHHHHhCCCCCEEECcCCCCCHHHHHHHHHH---HHHHhhhhhcccCCCCcEEECCCCC-CCcHHHHHHHHHHHhCCCc
Confidence 34456778888888854332211 1112111 1112 569999999875 54 3332 135677899
Q ss_pred cceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccc-----cCCc-hhcCCCcceeeecccccccccccc
Q 009534 351 EALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLR-----HVTW-LILAPNLKLIQMYDCRCLEEIISL 424 (532)
Q Consensus 351 ~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~-----~l~~-l~~l~~L~~L~l~~c~~l~~i~~~ 424 (532)
+.|++++|. +........ .+.....+++|++|+|++|.+. .+|. +..+++|+.|++++|. +......
T Consensus 190 ~~L~L~~n~-l~~~g~~~l-----~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~ 262 (386)
T 2ca6_A 190 HTVKMVQNG-IRPEGIEHL-----LLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAA 262 (386)
T ss_dssp CEEECCSSC-CCHHHHHHH-----HHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHH
T ss_pred CEEECcCCC-CCHhHHHHH-----HHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHH
Confidence 999999873 331100000 0001236889999999999773 3443 6788999999998876 3332110
Q ss_pred ccccCcCcccCccc--ccccccceeeccccccccc-----cCCCC-cCCCCccEEeecCCCC
Q 009534 425 EKLGEVPSEEMQNL--IPFARLERLSLGGLENLRS-----IYPRA-LPFPHLKELHVTLCPK 478 (532)
Q Consensus 425 ~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~L~~-----i~~~~-~~~p~L~~L~i~~C~~ 478 (532)
.- +..+ ..+++|++|++++|. +.. ++... ..+|+|+.|++++|+-
T Consensus 263 ~l--------~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 263 AV--------VDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp HH--------HHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred HH--------HHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence 00 0133 337999999999874 444 66545 4589999999999853
No 137
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.14 E-value=7.4e-06 Score=82.73 Aligned_cols=105 Identities=15% Similarity=0.002 Sum_probs=76.5
Q ss_pred CcccccHHHHHHHHHHhcc----CCceEEEEecCCCCcHHHHHHHHHHhccCCC----CC--CCeEEEEEeCCCC-CHHH
Q 009534 147 PTVVGLQSTLDRVWRCLTE----EPVGIVGLYGMGGVGKTTLLTQINNSFLHTP----NN--FDFVIWEVVSRDL-QLGK 215 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~~--F~~~~wv~v~~~~-~~~~ 215 (532)
+.++||+++++.+.+++.. +..+.+.|+|++|+||||+|+.+++... .. .. ....+|+...... +...
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 98 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIE-EVKKEDEEYKDVKQAYVNCREVGGTPQA 98 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHH-HHHHHSSSSTTCEEEEEEHHHHCSCHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHH-HHhhhhcCCCCceEEEEECccCCCCHHH
Confidence 5789999999999887753 3567899999999999999999998751 11 11 2356777776666 8888
Q ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhcCCcE
Q 009534 216 IQESIAKKIGLCNESWDSKSFDEKAQEIFKTMRNTKF 252 (532)
Q Consensus 216 l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~kr~ 252 (532)
+...++..+..........+.......+.+.+..++.
T Consensus 99 ~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 135 (384)
T 2qby_B 99 VLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA 135 (384)
T ss_dssp HHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE
T ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC
Confidence 8899888884322111334456667788888887774
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.14 E-value=4.9e-06 Score=74.20 Aligned_cols=74 Identities=14% Similarity=0.156 Sum_probs=35.5
Q ss_pred CeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCCc--hhc
Q 009534 326 PSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTW--LIL 403 (532)
Q Consensus 326 ~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~--l~~ 403 (532)
+.+++++. .++.+|.. ++ ++|+.|++++. .+..++..... .+++|++|+|++|+++.+|. +..
T Consensus 15 ~~l~~~~n-~l~~iP~~-~~--~~L~~L~Ls~N-~l~~~~~~~~~----------~l~~L~~L~Ls~N~l~~i~~~~~~~ 79 (174)
T 2r9u_A 15 TLVNCQNI-RLASVPAG-IP--TDKQRLWLNNN-QITKLEPGVFD----------HLVNLQQLYFNSNKLTAIPTGVFDK 79 (174)
T ss_dssp SEEECCSS-CCSSCCSC-CC--TTCSEEECCSS-CCCCCCTTTTT----------TCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cEEEeCCC-CCCccCCC-cC--CCCcEEEeCCC-CccccCHHHhc----------CCcCCCEEECCCCCCCccChhHhCC
Confidence 34454442 34555543 22 45555555553 34434332222 45555555555555555543 344
Q ss_pred CCCcceeeecc
Q 009534 404 APNLKLIQMYD 414 (532)
Q Consensus 404 l~~L~~L~l~~ 414 (532)
+++|+.|++++
T Consensus 80 l~~L~~L~L~~ 90 (174)
T 2r9u_A 80 LTQLTQLDLND 90 (174)
T ss_dssp CTTCCEEECCS
T ss_pred cchhhEEECCC
Confidence 55555555544
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.13 E-value=8.7e-06 Score=80.50 Aligned_cols=61 Identities=13% Similarity=0.167 Sum_probs=40.2
Q ss_pred ccCCCeEEEecCCCCC--------------------ccccccccc--------cccccceeeccccCcceeeecccCCcc
Q 009534 322 VSNTPSLSLTNCRSLS--------------------SLSVLTLAS--------LRHLEALDMRYCKDLEEMEIDYAGGEV 373 (532)
Q Consensus 322 l~~L~~L~l~~c~~l~--------------------~l~~~~l~~--------l~~L~~L~i~~c~~L~~l~~~~~~~~~ 373 (532)
+++|+.|+|+++. +. .+|...|.. +++|+.|.+.+ .++.++.....
T Consensus 48 l~~L~~LdLs~n~-i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~--- 121 (329)
T 3sb4_A 48 FPSLKVLDISNAE-IKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFK--- 121 (329)
T ss_dssp CTTCCEEEEEEEE-ECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTT---
T ss_pred hccCeEEecCcce-eEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc--cccchhHHHhh---
Confidence 3457777777643 33 455556677 88999998876 66766665544
Q ss_pred ccccccCCCCCccEEEEeCCcc
Q 009534 374 KRIRETHGFFSLHKVSIWGSKL 395 (532)
Q Consensus 374 ~~~~~~~~l~~L~~L~l~~c~L 395 (532)
.+++|+.|++.++.+
T Consensus 122 -------~~~~L~~l~l~~n~i 136 (329)
T 3sb4_A 122 -------GCDNLKICQIRKKTA 136 (329)
T ss_dssp -------TCTTCCEEEBCCSSC
T ss_pred -------cCcccceEEcCCCCc
Confidence 577888888776643
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.10 E-value=6.5e-06 Score=73.05 Aligned_cols=82 Identities=13% Similarity=0.154 Sum_probs=38.5
Q ss_pred CCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCCc--hh
Q 009534 325 TPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTW--LI 402 (532)
Q Consensus 325 L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~--l~ 402 (532)
.+.+++++ ..++.+|.. +. ++|+.|++++. .++.++..... .+++|++|++++|+++.++. +.
T Consensus 11 ~~~l~~s~-n~l~~ip~~-~~--~~l~~L~L~~N-~i~~~~~~~~~----------~l~~L~~L~Ls~N~l~~l~~~~f~ 75 (170)
T 3g39_A 11 GTTVDCSG-KSLASVPTG-IP--TTTQVLYLYDN-QITKLEPGVFD----------RLTQLTRLDLDNNQLTVLPAGVFD 75 (170)
T ss_dssp TTEEECTT-SCCSSCCSC-CC--TTCSEEECCSS-CCCCCCTTTTT----------TCTTCSEEECCSSCCCCCCTTTTT
T ss_pred CCEEEeCC-CCcCccCcc-CC--CCCcEEEcCCC-cCCccChhhhc----------CcccCCEEECCCCCcCccChhhcc
Confidence 34455554 235555533 22 45555555553 34434332222 35555555555555555443 34
Q ss_pred cCCCcceeeecccccccccc
Q 009534 403 LAPNLKLIQMYDCRCLEEII 422 (532)
Q Consensus 403 ~l~~L~~L~l~~c~~l~~i~ 422 (532)
.+++|++|+++++ .+..++
T Consensus 76 ~l~~L~~L~L~~N-~l~~~~ 94 (170)
T 3g39_A 76 KLTQLTQLSLNDN-QLKSIP 94 (170)
T ss_dssp TCTTCCEEECCSS-CCCCCC
T ss_pred CCCCCCEEECCCC-ccCEeC
Confidence 5555555555443 244443
No 141
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.09 E-value=1.6e-05 Score=80.13 Aligned_cols=100 Identities=18% Similarity=0.194 Sum_probs=74.8
Q ss_pred CcccccHHHHHHHHHHhcc----CCceEEEEecCCCCcHHHHHHHHHHhccCCC----CCCCeEEEEEeCCCCCHHHHHH
Q 009534 147 PTVVGLQSTLDRVWRCLTE----EPVGIVGLYGMGGVGKTTLLTQINNSFLHTP----NNFDFVIWEVVSRDLQLGKIQE 218 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~~F~~~~wv~v~~~~~~~~l~~ 218 (532)
+.++||+++++.+.+++.. +..+.+.|+|++|+||||+|+.+++... .. +.--..+|+......+...+..
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 97 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLE-ARASSLGVLVKPIYVNARHRETPYRVAS 97 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHH-HHHHHHTCCEEEEEEETTTSCSHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHH-HHHhccCCCeEEEEEECCcCCCHHHHHH
Confidence 5789999999999998843 4567899999999999999999998762 11 0012456777777788899999
Q ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHhc
Q 009534 219 SIAKKIGLCNESWDSKSFDEKAQEIFKTMR 248 (532)
Q Consensus 219 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~ 248 (532)
.++..++..... ...+..+....+.+.+.
T Consensus 98 ~l~~~l~~~~~~-~~~~~~~~~~~l~~~l~ 126 (387)
T 2v1u_A 98 AIAEAVGVRVPF-TGLSVGEVYERLVKRLS 126 (387)
T ss_dssp HHHHHHSCCCCS-SCCCHHHHHHHHHHHHT
T ss_pred HHHHHhCCCCCC-CCCCHHHHHHHHHHHHh
Confidence 999999764321 33446666677777774
No 142
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.09 E-value=5.7e-06 Score=83.41 Aligned_cols=105 Identities=12% Similarity=0.161 Sum_probs=75.0
Q ss_pred CcccccHHHHHHHHHHhcc----CCceEEEEecCCCCcHHHHHHHHHHhccCCCCC---CCeEEEEEeCCCCCHHHHHHH
Q 009534 147 PTVVGLQSTLDRVWRCLTE----EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNN---FDFVIWEVVSRDLQLGKIQES 219 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~---F~~~~wv~v~~~~~~~~l~~~ 219 (532)
+.++||+++++.+.+++.. +....+.|+|+.|+||||||+.+++... .. -...+|+......+...+...
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~ 96 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLH---KKFLGKFKHVYINTRQIDTPYRVLAD 96 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHH---HHTCSSCEEEEEEHHHHCSHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHH---HHhcCCceEEEEECCCCCCHHHHHHH
Confidence 5789999999999999873 4577899999999999999999998762 22 235677776666677788888
Q ss_pred HHHHhcCCCCCCCCCCHHHHHHHHHHHhcC--CcEEEe
Q 009534 220 IAKKIGLCNESWDSKSFDEKAQEIFKTMRN--TKFLIS 255 (532)
Q Consensus 220 i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~--kr~LlV 255 (532)
++..++..... ...+..+....+.+.+.. ++.+||
T Consensus 97 i~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vli 133 (386)
T 2qby_A 97 LLESLDVKVPF-TGLSIAELYRRLVKAVRDYGSQVVIV 133 (386)
T ss_dssp HTTTTSCCCCS-SSCCHHHHHHHHHHHHHTCCSCEEEE
T ss_pred HHHHhCCCCCC-CCCCHHHHHHHHHHHHhccCCeEEEE
Confidence 88777653221 233455656666666643 344444
No 143
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.05 E-value=4.1e-05 Score=77.27 Aligned_cols=99 Identities=16% Similarity=0.108 Sum_probs=72.4
Q ss_pred CcccccHHHHHHHHHHhcc----CCce--EEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCHHHHHHHH
Q 009534 147 PTVVGLQSTLDRVWRCLTE----EPVG--IVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQLGKIQESI 220 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~----~~~~--vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i 220 (532)
+.++||+++++.+.+++.. +... .+.|+|+.|+||||+++.+.+.. ..... ...+|+..+...+...+...+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~-~~~~~-~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY-KDKTT-ARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH-TTSCC-CEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHH-hhhcC-eeEEEEeCccCCCHHHHHHHH
Confidence 5789999999999998865 2334 89999999999999999999987 22111 346677777777888999999
Q ss_pred HHHhcCCCCCCCCCCHHHHHHHHHHHhc
Q 009534 221 AKKIGLCNESWDSKSFDEKAQEIFKTMR 248 (532)
Q Consensus 221 ~~~l~~~~~~~~~~~~~~~~~~l~~~L~ 248 (532)
+..++..... ...+.......+.+.+.
T Consensus 95 ~~~l~~~~~~-~~~~~~~~~~~l~~~l~ 121 (389)
T 1fnn_A 95 ARSLNIPFPR-RGLSRDEFLALLVEHLR 121 (389)
T ss_dssp HHHTTCCCCS-SCCCHHHHHHHHHHHHH
T ss_pred HHHhCccCCC-CCCCHHHHHHHHHHHHh
Confidence 9988654321 23345566666666553
No 144
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.05 E-value=9.5e-06 Score=80.60 Aligned_cols=69 Identities=16% Similarity=0.150 Sum_probs=54.5
Q ss_pred CcccccHHHHHHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCC------CHHHHHHHH
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDL------QLGKIQESI 220 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~------~~~~l~~~i 220 (532)
+.++||+++++.+.+++..+ +++.|+|+.|+|||||++.+.++. + .+|+.+.... +...+.+.+
T Consensus 12 ~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~l 81 (350)
T 2qen_A 12 EDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER----P----GILIDCRELYAERGHITREELIKEL 81 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS----S----EEEEEHHHHHHTTTCBCHHHHHHHH
T ss_pred HhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc----C----cEEEEeecccccccCCCHHHHHHHH
Confidence 57899999999999998764 799999999999999999998875 1 6777764432 566666666
Q ss_pred HHHhc
Q 009534 221 AKKIG 225 (532)
Q Consensus 221 ~~~l~ 225 (532)
...+.
T Consensus 82 ~~~l~ 86 (350)
T 2qen_A 82 QSTIS 86 (350)
T ss_dssp HHHSC
T ss_pred HHHHH
Confidence 66553
No 145
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.04 E-value=6.6e-07 Score=92.80 Aligned_cols=171 Identities=18% Similarity=0.124 Sum_probs=102.1
Q ss_pred hhhhcCCccCceeeEEeccchh--HHHhhcCCcccccccCCCeEEEecCCCCCc-----cccccccccccccceeecccc
Q 009534 287 VEELLGLKHLNVLTITLHSFAA--LQRLLTYPSLQSIVSNTPSLSLTNCRSLSS-----LSVLTLASLRHLEALDMRYCK 359 (532)
Q Consensus 287 ~~~l~~L~~L~~L~i~~~~~~~--l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~-----l~~~~l~~l~~L~~L~i~~c~ 359 (532)
...+..+++|+.|+++-..... +..+... ....+++|++|++++| .++. ++.. +..+++|+.|+++++.
T Consensus 220 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~--~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n~ 295 (461)
T 1z7x_W 220 CGIVASKASLRELALGSNKLGDVGMAELCPG--LLHPSSRLRTLWIWEC-GITAKGCGDLCRV-LRAKESLKELSLAGNE 295 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHH--HTSTTCCCCEEECTTS-CCCHHHHHHHHHH-HHHCTTCCEEECTTCC
T ss_pred HHHHHhCCCccEEeccCCcCChHHHHHHHHH--HhcCCCCceEEECcCC-CCCHHHHHHHHHH-HhhCCCcceEECCCCC
Confidence 4445667888888854322221 1112111 1112466999999987 4666 3332 5667889999998873
Q ss_pred CcceeeecccCCccccccccCCCCCccEEEEeCCccccC-----C-chhcCCCcceeeeccccccccccccccccCcCcc
Q 009534 360 DLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHV-----T-WLILAPNLKLIQMYDCRCLEEIISLEKLGEVPSE 433 (532)
Q Consensus 360 ~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l-----~-~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~ 433 (532)
+......... ..-....++|++|++++|.++.. + ++..+++|++|++++|. +.......-
T Consensus 296 -i~~~~~~~l~-----~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l------- 361 (461)
T 1z7x_W 296 -LGDEGARLLC-----ETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVREL------- 361 (461)
T ss_dssp -CHHHHHHHHH-----HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHH-------
T ss_pred -CchHHHHHHH-----HHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHHH-------
Confidence 3321111000 00001246999999999977653 2 25678999999998874 443321000
Q ss_pred cCcccc-cccccceeecccccccc-----ccCCCCcCCCCccEEeecCCC
Q 009534 434 EMQNLI-PFARLERLSLGGLENLR-----SIYPRALPFPHLKELHVTLCP 477 (532)
Q Consensus 434 ~~~~~~-~~~~L~~L~l~~~~~L~-----~i~~~~~~~p~L~~L~i~~C~ 477 (532)
...+. ..++|++|++++| .++ .++.....+++|+.|++++|+
T Consensus 362 -~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 362 -CQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp -HHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred -HHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 00111 2679999999998 455 455555668999999999985
No 146
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.04 E-value=6.6e-07 Score=92.81 Aligned_cols=71 Identities=24% Similarity=0.224 Sum_probs=37.9
Q ss_pred chhhhcCCccCceeeEEeccchh--HHHhhcCCcccccccCCCeEEEecCCCCCcccc----ccccccccccceeecccc
Q 009534 286 LVEELLGLKHLNVLTITLHSFAA--LQRLLTYPSLQSIVSNTPSLSLTNCRSLSSLSV----LTLASLRHLEALDMRYCK 359 (532)
Q Consensus 286 ~~~~l~~L~~L~~L~i~~~~~~~--l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~----~~l~~l~~L~~L~i~~c~ 359 (532)
....+..+++|+.|+++-..... ...+... +....++|++|++++|. +..... ..+..+++|+.|+++++.
T Consensus 105 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~--l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 181 (461)
T 1z7x_W 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEG--LLDPQCRLEKLQLEYCS-LSAASCEPLASVLRAKPDFKELTVSNND 181 (461)
T ss_dssp HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHH--HTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHHccCCceeEEECCCCcCchHHHHHHHHH--HhcCCCcceEEECCCCC-CCHHHHHHHHHHHhhCCCCCEEECcCCC
Confidence 35556778888888854222211 1122111 11113458888888874 444321 124456788888887764
No 147
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.02 E-value=9.7e-07 Score=88.67 Aligned_cols=35 Identities=14% Similarity=-0.016 Sum_probs=18.4
Q ss_pred cccceeeccccccccccCC-----CCcCCCCccEEeecCCC
Q 009534 442 ARLERLSLGGLENLRSIYP-----RALPFPHLKELHVTLCP 477 (532)
Q Consensus 442 ~~L~~L~l~~~~~L~~i~~-----~~~~~p~L~~L~i~~C~ 477 (532)
++|++|+++++ .+...+. ....+++|+.|++++|.
T Consensus 225 ~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 225 NHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp TTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred CCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 36666666654 2333221 22345666666666664
No 148
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.01 E-value=2e-06 Score=92.12 Aligned_cols=83 Identities=16% Similarity=0.196 Sum_probs=45.7
Q ss_pred CCCccEEEEeCC-c-ccc--CCch-hcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeecccccccc
Q 009534 382 FFSLHKVSIWGS-K-LRH--VTWL-ILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLR 456 (532)
Q Consensus 382 l~~L~~L~l~~c-~-L~~--l~~l-~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~ 456 (532)
+++|++|+++.| + +.. +..+ ..+++|+.|++++|. +..... +..+..+++|++|++++|+ +.
T Consensus 435 ~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~-----------~~~~~~~~~L~~L~l~~n~-l~ 501 (592)
T 3ogk_B 435 CKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGL-----------MEFSRGCPNLQKLEMRGCC-FS 501 (592)
T ss_dssp CTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHH-----------HHHHTCCTTCCEEEEESCC-CB
T ss_pred CCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHH-----------HHHHhcCcccCeeeccCCC-Cc
Confidence 555666666555 2 222 1112 235666666665543 221100 0133557888888888887 43
Q ss_pred c--cCCCCcCCCCccEEeecCCC
Q 009534 457 S--IYPRALPFPHLKELHVTLCP 477 (532)
Q Consensus 457 ~--i~~~~~~~p~L~~L~i~~C~ 477 (532)
. ++.....+|+|+.|++++|+
T Consensus 502 ~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 502 ERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHHHHHHHHCSSCCEEEEESCB
T ss_pred HHHHHHHHHhcCccCeeECcCCc
Confidence 2 22223457888888888887
No 149
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.01 E-value=1.6e-05 Score=70.47 Aligned_cols=101 Identities=13% Similarity=0.096 Sum_probs=77.5
Q ss_pred cccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCCc--hhcCCCcceeeecccccccccccccc
Q 009534 349 HLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTW--LILAPNLKLIQMYDCRCLEEIISLEK 426 (532)
Q Consensus 349 ~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~--l~~l~~L~~L~l~~c~~l~~i~~~~~ 426 (532)
..+.+++++. .++.+|... +++|++|++++|+++.++. +..+++|+.|+++++ .+..++.
T Consensus 10 ~~~~l~~s~n-~l~~ip~~~-------------~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~--- 71 (170)
T 3g39_A 10 SGTTVDCSGK-SLASVPTGI-------------PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPA--- 71 (170)
T ss_dssp ETTEEECTTS-CCSSCCSCC-------------CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCT---
T ss_pred CCCEEEeCCC-CcCccCccC-------------CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccCh---
Confidence 3456666663 566666432 4789999999998888754 788999999999876 4777765
Q ss_pred ccCcCcccCcccccccccceeeccccccccccCCC-CcCCCCccEEeecCCC
Q 009534 427 LGEVPSEEMQNLIPFARLERLSLGGLENLRSIYPR-ALPFPHLKELHVTLCP 477 (532)
Q Consensus 427 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~~-~~~~p~L~~L~i~~C~ 477 (532)
..+..+++|++|++++. +++.++.. ...+++|+.|++++.+
T Consensus 72 ---------~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 72 ---------GVFDKLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp ---------TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ---------hhccCCCCCCEEECCCC-ccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 24678999999999985 68888774 5678999999998853
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.97 E-value=1.3e-05 Score=79.74 Aligned_cols=82 Identities=18% Similarity=0.176 Sum_probs=52.0
Q ss_pred ccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCCc-
Q 009534 322 VSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTW- 400 (532)
Q Consensus 322 l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~- 400 (532)
+++|+.|+|++.+.+..++...|..+++|+.|++++. .+..++..... .+++|++|+|++|+|..+|.
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~----------~l~~L~~L~l~~N~l~~~~~~ 98 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFH----------FTPRLSRLNLSFNALESLSWK 98 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGG----------SCSCCCEEECCSSCCSCCCST
T ss_pred CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhc----------CCcCCCEEeCCCCccceeCHH
Confidence 4557777777655677776655677777777777765 56666554433 57777777777777766653
Q ss_pred -hhcCCCcceeeeccc
Q 009534 401 -LILAPNLKLIQMYDC 415 (532)
Q Consensus 401 -l~~l~~L~~L~l~~c 415 (532)
+..++ |+.|++.+.
T Consensus 99 ~~~~~~-L~~l~l~~N 113 (347)
T 2ifg_A 99 TVQGLS-LQELVLSGN 113 (347)
T ss_dssp TTCSCC-CCEEECCSS
T ss_pred HcccCC-ceEEEeeCC
Confidence 22333 777777543
No 151
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.93 E-value=1.3e-05 Score=71.46 Aligned_cols=82 Identities=16% Similarity=0.209 Sum_probs=68.9
Q ss_pred cCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCCc--
Q 009534 323 SNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTW-- 400 (532)
Q Consensus 323 ~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~-- 400 (532)
++|+.|+++++. +..++...+..+++|+.|++++. .+..++..... .+++|++|++++|.++.+|.
T Consensus 33 ~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~----------~l~~L~~L~L~~N~l~~l~~~~ 100 (174)
T 2r9u_A 33 TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFD----------KLTQLTQLDLNDNHLKSIPRGA 100 (174)
T ss_dssp TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT----------TCTTCCEEECCSSCCCCCCTTT
T ss_pred CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCC-CCCccChhHhC----------CcchhhEEECCCCccceeCHHH
Confidence 459999999964 88887666889999999999986 67777765543 68999999999999999875
Q ss_pred hhcCCCcceeeecccc
Q 009534 401 LILAPNLKLIQMYDCR 416 (532)
Q Consensus 401 l~~l~~L~~L~l~~c~ 416 (532)
+..+++|+.|++++.+
T Consensus 101 ~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 101 FDNLKSLTHIYLYNNP 116 (174)
T ss_dssp TTTCTTCSEEECCSSC
T ss_pred hccccCCCEEEeCCCC
Confidence 7889999999998754
No 152
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.90 E-value=2.1e-06 Score=92.06 Aligned_cols=85 Identities=13% Similarity=0.051 Sum_probs=45.3
Q ss_pred CCCCccEEEEeCCcccc--CC-chhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccc------
Q 009534 381 GFFSLHKVSIWGSKLRH--VT-WLILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGG------ 451 (532)
Q Consensus 381 ~l~~L~~L~l~~c~L~~--l~-~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~------ 451 (532)
.+++|++|++++|.+.. ++ .+..+++|+.|++.++..-..+.. ....+++|++|++.+
T Consensus 291 ~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~-------------~~~~~~~L~~L~L~~g~~~~~ 357 (592)
T 3ogk_B 291 FAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEV-------------LAQYCKQLKRLRIERGADEQG 357 (592)
T ss_dssp GGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHH-------------HHHHCTTCCEEEEECCCCSST
T ss_pred hcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHH-------------HHHhCCCCCEEEeecCccccc
Confidence 45566666666665332 11 135566666666653322111211 234467788888875
Q ss_pred ----cccccccC--CCCcCCCCccEEeecCCCCC
Q 009534 452 ----LENLRSIY--PRALPFPHLKELHVTLCPKL 479 (532)
Q Consensus 452 ----~~~L~~i~--~~~~~~p~L~~L~i~~C~~L 479 (532)
|..+.... .....+|+|++|++ .|.++
T Consensus 358 ~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l 390 (592)
T 3ogk_B 358 MEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDI 390 (592)
T ss_dssp TSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCC
T ss_pred cccccCccCHHHHHHHHhhCccCeEEEe-ecCCc
Confidence 65554321 11234788888888 44444
No 153
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.87 E-value=2.6e-06 Score=91.24 Aligned_cols=39 Identities=13% Similarity=0.175 Sum_probs=23.8
Q ss_pred ccccccceeeccccccccccC--CCCcCCCCccEEeecCCCC
Q 009534 439 IPFARLERLSLGGLENLRSIY--PRALPFPHLKELHVTLCPK 478 (532)
Q Consensus 439 ~~~~~L~~L~l~~~~~L~~i~--~~~~~~p~L~~L~i~~C~~ 478 (532)
..+++|+.|++++|+. .... .....+++|+.|++++|+.
T Consensus 478 ~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 478 SGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred hcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 3467777777777764 2211 1233467777777777765
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.87 E-value=4.1e-06 Score=83.90 Aligned_cols=133 Identities=14% Similarity=0.142 Sum_probs=78.6
Q ss_pred cccCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCC-------
Q 009534 321 IVSNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGS------- 393 (532)
Q Consensus 321 ~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c------- 393 (532)
.+++|+.|.|+++..+. ++. +. +++|+.|.+..|. +..-...... ...+|+|++|+|+.+
T Consensus 170 ~~P~L~~L~L~g~~~l~-l~~--~~-~~~L~~L~L~~~~-l~~~~l~~l~--------~~~lp~L~~L~L~~~~~~~~~~ 236 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNLS-IGK--KP-RPNLKSLEIISGG-LPDSVVEDIL--------GSDLPNLEKLVLYVGVEDYGFD 236 (362)
T ss_dssp TCTTCCEEEEECCBTCB-CCS--CB-CTTCSEEEEECSB-CCHHHHHHHH--------HSBCTTCCEEEEECBCGGGTCC
T ss_pred cCCCCcEEEEeCCCCce-ecc--cc-CCCCcEEEEecCC-CChHHHHHHH--------HccCCCCcEEEEeccccccccc
Confidence 35779999998874332 222 32 6789999988764 3211110000 125889999998642
Q ss_pred -ccccCCc---hhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccc-----cCCCCcC
Q 009534 394 -KLRHVTW---LILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRS-----IYPRALP 464 (532)
Q Consensus 394 -~L~~l~~---l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~-----i~~~~~~ 464 (532)
.+..+.. ...+|+|+.|.+.+|.-.......- .....+|+|++|+|+.+ .+.. ++..+..
T Consensus 237 ~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~l----------a~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~ 305 (362)
T 2ra8_A 237 GDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMF----------LESDILPQLETMDISAG-VLTDEGARLLLDHVDK 305 (362)
T ss_dssp SCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHH----------HHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHH
T ss_pred hhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHH----------HhCccCCCCCEEECCCC-CCChHHHHHHHhhccc
Confidence 1222221 2357899999998776432221100 01234789999999764 4554 3333346
Q ss_pred CCCccEEeecCCC
Q 009534 465 FPHLKELHVTLCP 477 (532)
Q Consensus 465 ~p~L~~L~i~~C~ 477 (532)
+++|+.|++++|.
T Consensus 306 l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 306 IKHLKFINMKYNY 318 (362)
T ss_dssp HTTCSEEECCSBB
T ss_pred CCcceEEECCCCc
Confidence 7899999998874
No 155
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.71 E-value=7.9e-05 Score=74.01 Aligned_cols=68 Identities=13% Similarity=0.182 Sum_probs=52.0
Q ss_pred CcccccHHHHHHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCC-----CCHHHHHHHHH
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRD-----LQLGKIQESIA 221 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~-----~~~~~l~~~i~ 221 (532)
..++||+++++.+.+ +.. +++.|+|++|+|||||++.+.+.. . . ..+|+.+... .+...+...+.
T Consensus 13 ~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~-~--~---~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINEL-N--L---PYIYLDLRKFEERNYISYKDFLLELQ 82 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHH-T--C---CEEEEEGGGGTTCSCCCHHHHHHHHH
T ss_pred HHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhc-C--C---CEEEEEchhhccccCCCHHHHHHHHH
Confidence 578999999999999 765 699999999999999999999887 2 2 2578886642 34455555554
Q ss_pred HHh
Q 009534 222 KKI 224 (532)
Q Consensus 222 ~~l 224 (532)
..+
T Consensus 83 ~~l 85 (357)
T 2fna_A 83 KEI 85 (357)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 156
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.69 E-value=8.8e-06 Score=81.62 Aligned_cols=141 Identities=16% Similarity=0.108 Sum_probs=89.1
Q ss_pred cc-CCCeEEEecCCCCCcccccccccc-----ccccceeeccccCcceeeecccCCccccccccCCC-CCccEEEEeCCc
Q 009534 322 VS-NTPSLSLTNCRSLSSLSVLTLASL-----RHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGF-FSLHKVSIWGSK 394 (532)
Q Consensus 322 l~-~L~~L~l~~c~~l~~l~~~~l~~l-----~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l-~~L~~L~l~~c~ 394 (532)
++ +|++|++++|. +.......+..+ ++|++|++++|. +...+..... .....+ ++|++|++++|.
T Consensus 49 ~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~------~~l~~~~~~L~~L~Ls~N~ 120 (362)
T 3goz_A 49 TPASVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSSDELV------KTLAAIPFTITVLDLGWND 120 (362)
T ss_dssp CCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHH------HHHHTSCTTCCEEECCSSC
T ss_pred CCCceeEEECcCCC-CCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHHHHHH------HHHHhCCCCccEEECcCCc
Confidence 34 69999999974 666544445554 899999999984 4433322110 001134 799999999998
Q ss_pred cccCCc------hhc-CCCcceeeeccccccccccccccccCcCcccCccccccc-ccceeeccccccccccCC-----C
Q 009534 395 LRHVTW------LIL-APNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFA-RLERLSLGGLENLRSIYP-----R 461 (532)
Q Consensus 395 L~~l~~------l~~-l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~L~~i~~-----~ 461 (532)
+...+. +.. .++|++|++++|. +....... -+..+..++ +|++|++++| .++.... .
T Consensus 121 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~--------l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~ 190 (362)
T 3goz_A 121 FSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDE--------LIQILAAIPANVNSLNLRGN-NLASKNCAELAKF 190 (362)
T ss_dssp GGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHH--------HHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHH
T ss_pred CCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHH--------HHHHHhcCCccccEeeecCC-CCchhhHHHHHHH
Confidence 887654 233 3699999999875 33211100 001334455 9999999997 4554432 2
Q ss_pred CcCC-CCccEEeecCCCCCCC
Q 009534 462 ALPF-PHLKELHVTLCPKLKK 481 (532)
Q Consensus 462 ~~~~-p~L~~L~i~~C~~L~~ 481 (532)
...+ ++|+.|++++|. +..
T Consensus 191 l~~~~~~L~~L~Ls~N~-i~~ 210 (362)
T 3goz_A 191 LASIPASVTSLDLSANL-LGL 210 (362)
T ss_dssp HHTSCTTCCEEECTTSC-GGG
T ss_pred HHhCCCCCCEEECCCCC-CCh
Confidence 2345 499999999986 443
No 157
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.66 E-value=6.3e-05 Score=74.74 Aligned_cols=100 Identities=25% Similarity=0.298 Sum_probs=74.5
Q ss_pred eEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCCc--hhcC
Q 009534 327 SLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTW--LILA 404 (532)
Q Consensus 327 ~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~--l~~l 404 (532)
.++.++.+.++.+|. ++.+++|+.|+++++..+..++..... .+++|++|+|++|+|+.++. +..+
T Consensus 12 ~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~----------~l~~L~~L~l~~N~l~~~~~~~~~~l 79 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLR----------GLGELRNLTIVKSGLRFVAPDAFHFT 79 (347)
T ss_dssp CEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSC----------SCCCCSEEECCSSCCCEECTTGGGSC
T ss_pred EEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhc----------cccCCCEEECCCCccceeCHHHhcCC
Confidence 455666446888886 888889999999876688888765544 68999999999998888654 6789
Q ss_pred CCcceeeeccccccccccccccccCcCcccCcccccccccceeecccc
Q 009534 405 PNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGL 452 (532)
Q Consensus 405 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 452 (532)
++|+.|+|++. .+..++. ..+..+ +|+.|+|.+.
T Consensus 80 ~~L~~L~l~~N-~l~~~~~------------~~~~~~-~L~~l~l~~N 113 (347)
T 2ifg_A 80 PRLSRLNLSFN-ALESLSW------------KTVQGL-SLQELVLSGN 113 (347)
T ss_dssp SCCCEEECCSS-CCSCCCS------------TTTCSC-CCCEEECCSS
T ss_pred cCCCEEeCCCC-ccceeCH------------HHcccC-CceEEEeeCC
Confidence 99999999764 4777765 123333 3888888764
No 158
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.66 E-value=3.8e-05 Score=76.83 Aligned_cols=133 Identities=17% Similarity=0.193 Sum_probs=80.6
Q ss_pred ccCCCeEEEecCCC----C-----CccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeC
Q 009534 322 VSNTPSLSLTNCRS----L-----SSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWG 392 (532)
Q Consensus 322 l~~L~~L~l~~c~~----l-----~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 392 (532)
|++|+.|.|..... + ..+. ..+..+|+|+.|.++++..+. ++. ..+++|++|.|..
T Consensus 138 l~~L~~L~l~~~~~e~~~is~~~~~~L~-~ll~~~P~L~~L~L~g~~~l~-l~~-------------~~~~~L~~L~L~~ 202 (362)
T 2ra8_A 138 FAHFEGLFWGDIDFEEQEISWIEQVDLS-PVLDAMPLLNNLKIKGTNNLS-IGK-------------KPRPNLKSLEIIS 202 (362)
T ss_dssp HTTCSEEEECCCCTTTCCGGGCBCCBCH-HHHHTCTTCCEEEEECCBTCB-CCS-------------CBCTTCSEEEEEC
T ss_pred cchhhheeecCcchhhcccccccccCHH-HHHhcCCCCcEEEEeCCCCce-ecc-------------ccCCCCcEEEEec
Confidence 56688888865321 0 1122 124667899999998874333 221 1378999999998
Q ss_pred Ccccc--CCchh--cCCCcceeeeccccc-------cccccccccccCcCcccCcccccccccceeeccccccccccCC-
Q 009534 393 SKLRH--VTWLI--LAPNLKLIQMYDCRC-------LEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIYP- 460 (532)
Q Consensus 393 c~L~~--l~~l~--~l~~L~~L~l~~c~~-------l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~- 460 (532)
|.+.. +..+. .+|+|+.|+|+.+.+ ++.+.. .-....||+|+.|.+.+|.--...+.
T Consensus 203 ~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~-----------~l~~~~~p~Lr~L~L~~~~i~~~~~~~ 271 (362)
T 2ra8_A 203 GGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP-----------LFSKDRFPNLKWLGIVDAEEQNVVVEM 271 (362)
T ss_dssp SBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG-----------GSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred CCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH-----------HHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence 86554 22233 689999999964321 111111 00123589999999988753221111
Q ss_pred --CCcCCCCccEEeecCCCCCCC
Q 009534 461 --RALPFPHLKELHVTLCPKLKK 481 (532)
Q Consensus 461 --~~~~~p~L~~L~i~~C~~L~~ 481 (532)
....+|.|+.|+++.| .+..
T Consensus 272 la~a~~~~~L~~LdLs~n-~L~d 293 (362)
T 2ra8_A 272 FLESDILPQLETMDISAG-VLTD 293 (362)
T ss_dssp HHHCSSGGGCSEEECCSS-CCBH
T ss_pred HHhCccCCCCCEEECCCC-CCCh
Confidence 1235899999999764 4443
No 159
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.58 E-value=7.5e-05 Score=66.81 Aligned_cols=46 Identities=24% Similarity=0.368 Sum_probs=41.6
Q ss_pred CcccccHHHHHHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..++|+++.++.+.+++.....+.+-|+|+.|+|||++|+.+++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999987767778899999999999999998876
No 160
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.57 E-value=0.00034 Score=68.14 Aligned_cols=79 Identities=10% Similarity=0.032 Sum_probs=58.8
Q ss_pred cccccHHHHHHHHHHhcc----CCceEEEEecCCCCcHHHHHHHHHHhccCCCC---CCC--eEEEEEeCCCCCHHHHHH
Q 009534 148 TVVGLQSTLDRVWRCLTE----EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPN---NFD--FVIWEVVSRDLQLGKIQE 218 (532)
Q Consensus 148 ~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---~F~--~~~wv~v~~~~~~~~l~~ 218 (532)
.+.||+++++.+...|.. +....+-|+|+.|+|||++++.+.++. .... ... ..+.|......+...+..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L-~~~~~~~~~~~~~~v~INc~~~~t~~~~~~ 99 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDEL-ITSSARKELPIFDYIHIDALELAGMDALYE 99 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHH-HHTTTTTSSCCEEEEEEETTCCC--HHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHH-HHHhhhccCCceEEEEEeccccCCHHHHHH
Confidence 379999999999887753 577888999999999999999999987 3211 111 244555556678889999
Q ss_pred HHHHHhcCC
Q 009534 219 SIAKKIGLC 227 (532)
Q Consensus 219 ~i~~~l~~~ 227 (532)
.|.+++...
T Consensus 100 ~I~~~L~g~ 108 (318)
T 3te6_A 100 KIWFAISKE 108 (318)
T ss_dssp HHHHHHSCC
T ss_pred HHHHHhcCC
Confidence 999999654
No 161
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.45 E-value=0.00011 Score=65.37 Aligned_cols=46 Identities=24% Similarity=0.347 Sum_probs=41.4
Q ss_pred CcccccHHHHHHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..++|++++++.+.+.+.....+.+-|+|+.|+|||++|+.+.+..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999987767777899999999999999998876
No 162
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.43 E-value=0.00024 Score=65.15 Aligned_cols=46 Identities=20% Similarity=0.296 Sum_probs=41.0
Q ss_pred CcccccHHHHHHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+++|+++.++.+.+++.......+-|+|+.|+|||++|+.+++..
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999987766569999999999999999999875
No 163
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.23 E-value=0.0029 Score=64.05 Aligned_cols=161 Identities=14% Similarity=0.118 Sum_probs=86.4
Q ss_pred cCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCc------------cccccccCCCCCccEEEE
Q 009534 323 SNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGE------------VKRIRETHGFFSLHKVSI 390 (532)
Q Consensus 323 ~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~------------~~~~~~~~~l~~L~~L~l 390 (532)
++|+.+.+.. .++.++...|.++++|+.+.+.+ +++.++.....+. .-.......+++|+.+.+
T Consensus 203 ~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l 278 (401)
T 4fdw_A 203 AGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTT 278 (401)
T ss_dssp CCCSEEECCT--TCCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEE
T ss_pred cccCEEEeCC--chheehhhHhhCCCCCCEEecCC--CccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEe
Confidence 5577777763 46677666677777777777754 3444433222200 000111224556666666
Q ss_pred eCCccc-----cCC--chhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccccCCCCc
Q 009534 391 WGSKLR-----HVT--WLILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIYPRAL 463 (532)
Q Consensus 391 ~~c~L~-----~l~--~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~~~~ 463 (532)
.++.+. .++ .+..+++|+.+.+. .+++.|.. ..+..+++|+.+.|.+ +++.+....+
T Consensus 279 ~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~--~~i~~I~~------------~aF~~c~~L~~l~lp~--~l~~I~~~aF 342 (401)
T 4fdw_A 279 YGSTFNDDPEAMIHPYCLEGCPKLARFEIP--ESIRILGQ------------GLLGGNRKVTQLTIPA--NVTQINFSAF 342 (401)
T ss_dssp ESSCCCCCTTCEECTTTTTTCTTCCEECCC--TTCCEECT------------TTTTTCCSCCEEEECT--TCCEECTTSS
T ss_pred CCccccCCcccEECHHHhhCCccCCeEEeC--CceEEEhh------------hhhcCCCCccEEEECc--cccEEcHHhC
Confidence 554222 122 14556666666664 23444433 3566677888888754 4677765433
Q ss_pred -CCCCccEEeecCCCCCCCCCCCCCCCC-CceeEEecchhhhhh
Q 009534 464 -PFPHLKELHVTLCPKLKKLPFDCTSGH-ERKLIIKGQEEWWNN 505 (532)
Q Consensus 464 -~~p~L~~L~i~~C~~L~~lp~~~~~~l-~~L~~~~~~~~w~~~ 505 (532)
.+ +|+.+.+.+. .+..++.+....+ ..+..+..+....+.
T Consensus 343 ~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~~~~~ 384 (401)
T 4fdw_A 343 NNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPAESVEK 384 (401)
T ss_dssp SSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECGGGHHH
T ss_pred CCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCHHHHHH
Confidence 45 8888888775 4445544333222 345556666554433
No 164
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.11 E-value=0.00039 Score=64.57 Aligned_cols=46 Identities=24% Similarity=0.286 Sum_probs=40.6
Q ss_pred CcccccHHHHHHHHHHhccCC-ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEP-VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+++|++..++.+.+++..++ .+.+.|+|++|+||||+|+.+++..
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999997654 4578999999999999999999877
No 165
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.09 E-value=3.5e-05 Score=77.47 Aligned_cols=137 Identities=14% Similarity=0.107 Sum_probs=85.5
Q ss_pred cCCCeEEEecCCCCCccccccc-cccccccceeeccccCcceeeecccCCcccccccc-CCCCCccEEEEeCCccccCC-
Q 009534 323 SNTPSLSLTNCRSLSSLSVLTL-ASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRET-HGFFSLHKVSIWGSKLRHVT- 399 (532)
Q Consensus 323 ~~L~~L~l~~c~~l~~l~~~~l-~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~-~~l~~L~~L~l~~c~L~~l~- 399 (532)
++|++|+|++|. +.......+ ..+++|+.|++++| .+......... ... ...++|++|++++|.++...
T Consensus 101 ~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~------~~L~~~~~~L~~L~Ls~n~l~~~~~ 172 (372)
T 3un9_A 101 HALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLR------DLLLHDQCQITTLRLSNNPLTAAGV 172 (372)
T ss_dssp SCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHH------HHHHSTTCCCCEEECCSSCCHHHHH
T ss_pred CCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHH------HHHHhcCCccceeeCCCCCCChHHH
Confidence 469999999975 554322223 45778999999987 34322211110 000 13578999999999776521
Q ss_pred -----chhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccccC-----CCCcCCCCcc
Q 009534 400 -----WLILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIY-----PRALPFPHLK 469 (532)
Q Consensus 400 -----~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~-----~~~~~~p~L~ 469 (532)
.+...++|++|++++|. +...... .. ...+...++|+.|++++|. ++... ......++|+
T Consensus 173 ~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~----~L----~~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~ 242 (372)
T 3un9_A 173 AVLMEGLAGNTSVTHLSLLHTG-LGDEGLE----LL----AAQLDRNRQLQELNVAYNG-AGDTAALALARAAREHPSLE 242 (372)
T ss_dssp HHHHHHHHTCSSCCEEECTTSS-CHHHHHH----HH----HHHGGGCSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHhcCCCcCEEeCCCCC-CCcHHHH----HH----HHHHhcCCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCC
Confidence 14678999999998875 4332110 00 0145567899999999873 44321 1223468999
Q ss_pred EEeecCCC
Q 009534 470 ELHVTLCP 477 (532)
Q Consensus 470 ~L~i~~C~ 477 (532)
+|++++|+
T Consensus 243 ~L~Ls~N~ 250 (372)
T 3un9_A 243 LLHLYFNE 250 (372)
T ss_dssp EEECTTSS
T ss_pred EEeccCCC
Confidence 99999985
No 166
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.09 E-value=3.2e-05 Score=77.77 Aligned_cols=134 Identities=17% Similarity=0.165 Sum_probs=86.7
Q ss_pred ccCCCeEEEecCCCCCccccccccc-----cccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccc
Q 009534 322 VSNTPSLSLTNCRSLSSLSVLTLAS-----LRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLR 396 (532)
Q Consensus 322 l~~L~~L~l~~c~~l~~l~~~~l~~-----l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~ 396 (532)
+++|+.|++++|. +.......+.. .++|+.|++++|. +........ ...+++|++|++++|.+.
T Consensus 71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l---------~~~L~~L~~L~Ls~n~l~ 139 (372)
T 3un9_A 71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTL---------LPVFLRARKLGLQLNSLG 139 (372)
T ss_dssp HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHT---------HHHHHTEEEEECCSSCCC
T ss_pred HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHH---------HHHHHhccHhhcCCCCCC
Confidence 4569999999976 66554443433 2689999999984 332111111 124678999999999876
Q ss_pred cCC--ch-----hcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeecccccccccc-----CCCCcC
Q 009534 397 HVT--WL-----ILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSI-----YPRALP 464 (532)
Q Consensus 397 ~l~--~l-----~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i-----~~~~~~ 464 (532)
... .+ ...++|++|++++|. +.......- ...+...++|++|+|+++. +... +.....
T Consensus 140 ~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l--------~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~ 209 (372)
T 3un9_A 140 PEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVL--------MEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDR 209 (372)
T ss_dssp HHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHH--------HHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHHHH--------HHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhc
Confidence 532 12 246889999999885 433211000 0144567899999999874 4432 223445
Q ss_pred CCCccEEeecCC
Q 009534 465 FPHLKELHVTLC 476 (532)
Q Consensus 465 ~p~L~~L~i~~C 476 (532)
.++|+.|++++|
T Consensus 210 ~~~L~~L~Ls~N 221 (372)
T 3un9_A 210 NRQLQELNVAYN 221 (372)
T ss_dssp CSCCCEEECCSS
T ss_pred CCCcCeEECCCC
Confidence 679999999986
No 167
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.96 E-value=0.004 Score=63.05 Aligned_cols=143 Identities=13% Similarity=0.156 Sum_probs=72.4
Q ss_pred CCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCCc--hh
Q 009534 325 TPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTW--LI 402 (532)
Q Consensus 325 L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~--l~ 402 (532)
|+.+.+.+ +++.++...|.++++|+.+.+.+. .++.++..... ..+|+.+.|.++ ++.++. +.
T Consensus 159 L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~-----------~~~L~~l~lp~~-l~~I~~~aF~ 223 (401)
T 4fdw_A 159 VQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFV-----------YAGIEEVLLPVT-LKEIGSQAFL 223 (401)
T ss_dssp CCEEECCT--TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTT-----------TCCCSEEECCTT-CCEECTTTTT
T ss_pred ceEEEeCC--CccEehHHHhhCcccCCeeecCCC-cceEechhhEe-----------ecccCEEEeCCc-hheehhhHhh
Confidence 55555543 455555445555555555555442 34444443322 345555555432 333322 44
Q ss_pred cCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccccCCCC-cCCCCccEEeecCCC----
Q 009534 403 LAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIYPRA-LPFPHLKELHVTLCP---- 477 (532)
Q Consensus 403 ~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~~~-~~~p~L~~L~i~~C~---- 477 (532)
.+++|+.+.+.+ +++.|.. ..+.. .+|+.+.+.+ +++.++... ..|++|+.+.+.+..
T Consensus 224 ~~~~L~~l~l~~--~l~~I~~------------~aF~~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~ 286 (401)
T 4fdw_A 224 KTSQLKTIEIPE--NVSTIGQ------------EAFRE-SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDD 286 (401)
T ss_dssp TCTTCCCEECCT--TCCEECT------------TTTTT-CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCC
T ss_pred CCCCCCEEecCC--CccCccc------------ccccc-CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCC
Confidence 556666666643 3444433 23333 5677776632 466665533 357777777776532
Q ss_pred CCCCCCCCCCCCCCceeEEecc
Q 009534 478 KLKKLPFDCTSGHERKLIIKGQ 499 (532)
Q Consensus 478 ~L~~lp~~~~~~l~~L~~~~~~ 499 (532)
.+..++......+.+|+.+..+
T Consensus 287 ~~~~I~~~aF~~c~~L~~l~l~ 308 (401)
T 4fdw_A 287 PEAMIHPYCLEGCPKLARFEIP 308 (401)
T ss_dssp TTCEECTTTTTTCTTCCEECCC
T ss_pred cccEECHHHhhCCccCCeEEeC
Confidence 1224555444445666666655
No 168
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.73 E-value=0.0014 Score=64.17 Aligned_cols=46 Identities=22% Similarity=0.306 Sum_probs=41.2
Q ss_pred CcccccHHHHHHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+++|+++.++.+.+++..+....+-++|+.|+||||+|+.+++..
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4589999999999999988766568999999999999999999886
No 169
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.72 E-value=0.0011 Score=64.59 Aligned_cols=46 Identities=26% Similarity=0.427 Sum_probs=41.0
Q ss_pred CcccccHHHHHHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++++|++..++.+.+++..++...+-++|++|+||||+|+.+++..
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4689999999999999988765558999999999999999999886
No 170
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.61 E-value=0.002 Score=61.86 Aligned_cols=46 Identities=26% Similarity=0.400 Sum_probs=39.1
Q ss_pred CcccccHHHHHHHHHHhcc-------------CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTE-------------EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++++|.++.++.+.+.+.. ...+-+-|+|+.|+|||++|+.+.+..
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 5689999999999888743 245668899999999999999999887
No 171
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.53 E-value=0.0024 Score=54.52 Aligned_cols=45 Identities=24% Similarity=0.269 Sum_probs=35.1
Q ss_pred cccccHHHHHHHHHHhcc--CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 148 TVVGLQSTLDRVWRCLTE--EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 148 ~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.++|+...++++.+.+.. ....-|-|+|..|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 478999888888887743 233446799999999999999999875
No 172
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.51 E-value=0.0021 Score=66.55 Aligned_cols=46 Identities=26% Similarity=0.380 Sum_probs=40.1
Q ss_pred CcccccHHHHHHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+.++|++++++.+++.+......-+-++|..|+|||++|+.+....
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999976655556799999999999999999886
No 173
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.38 E-value=0.0038 Score=57.83 Aligned_cols=60 Identities=10% Similarity=0.029 Sum_probs=41.9
Q ss_pred Cccccc---HHHHHHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCC
Q 009534 147 PTVVGL---QSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSR 209 (532)
Q Consensus 147 ~~~vGr---~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~ 209 (532)
++++|. +..++.+.++...+..+.+-|+|+.|+||||+|+.+.+... .....+.|+..+.
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~---~~~~~~~~~~~~~ 90 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARAN---ELERRSFYIPLGI 90 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEGGG
T ss_pred hhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEEHHH
Confidence 356663 35566666666655677889999999999999999998872 2233456676543
No 174
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.28 E-value=0.0026 Score=62.99 Aligned_cols=46 Identities=17% Similarity=0.297 Sum_probs=40.3
Q ss_pred CcccccHHHHHHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+++|+++.++.+..++..+....+-++|+.|+||||+|+.+.+..
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999987755558999999999999999998875
No 175
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.21 E-value=0.0058 Score=57.57 Aligned_cols=46 Identities=22% Similarity=0.203 Sum_probs=35.9
Q ss_pred CcccccHHHHHHHHHHhc---c---------CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLT---E---------EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++++|.++.++.+.+++. . ...+-+-++|+.|+|||++|+.+++..
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 568999988777766542 1 133457799999999999999999987
No 176
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.18 E-value=0.005 Score=59.68 Aligned_cols=46 Identities=28% Similarity=0.340 Sum_probs=38.3
Q ss_pred CcccccHHHHHHHHHHhcc-------------CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTE-------------EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++++|.++.++.+.+++.. ...+.+-++|+.|+|||++|+.+++..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 4689999888888877642 245678999999999999999999976
No 177
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.17 E-value=0.003 Score=61.45 Aligned_cols=46 Identities=20% Similarity=0.296 Sum_probs=40.5
Q ss_pred CcccccHHHHHHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++++|++..++.+.+++..+....+-++|+.|+|||++|+.+.+..
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHh
Confidence 4589999999999999887765558999999999999999999876
No 178
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.16 E-value=0.0045 Score=61.73 Aligned_cols=46 Identities=24% Similarity=0.286 Sum_probs=40.3
Q ss_pred CcccccHHHHHHHHHHhccCC-ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEP-VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+++|+++.++.+.+++..++ .+.+-|+|+.|+||||+|+.+.+..
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999997764 4578899999999999999998877
No 179
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.13 E-value=0.006 Score=58.82 Aligned_cols=46 Identities=20% Similarity=0.260 Sum_probs=38.5
Q ss_pred CcccccHHHHHHHHHHhcc------------CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTE------------EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++++|.+..++.+.+++.. ...+.+-|+|+.|+||||+|+.+.+..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4689999999998887632 135678899999999999999999876
No 180
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.11 E-value=0.005 Score=59.72 Aligned_cols=45 Identities=27% Similarity=0.442 Sum_probs=36.3
Q ss_pred cccccHHHHHHHHHHhc---------------cCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 148 TVVGLQSTLDRVWRCLT---------------EEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 148 ~~vGr~~~~~~l~~~L~---------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+++|.++.++.+.+.+. .....-+-|+|+.|+|||++|+.+.+..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 57999988888877653 2344568899999999999999888776
No 181
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.10 E-value=0.0049 Score=64.58 Aligned_cols=46 Identities=24% Similarity=0.345 Sum_probs=40.0
Q ss_pred CcccccHHHHHHHHHHhcc-----------------CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTE-----------------EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~-----------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+++|+++.++.+.+++.. +..+.+-|+|+.|+||||+|+.+.+..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999865 134789999999999999999999876
No 182
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.06 E-value=0.0041 Score=55.11 Aligned_cols=41 Identities=22% Similarity=0.195 Sum_probs=30.3
Q ss_pred cHHHHHHHHHHhcc---CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 152 LQSTLDRVWRCLTE---EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 152 r~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..+.++.+.+++.+ .....+.|+|+.|+||||||+.+++..
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 34444555555533 245789999999999999999999876
No 183
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.04 E-value=0.0056 Score=60.25 Aligned_cols=46 Identities=24% Similarity=0.289 Sum_probs=39.0
Q ss_pred CcccccHHHHHHHHHHhcc-----CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTE-----EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++++|++..++.+..++.. .....+-|+|+.|+|||++|+.+.+..
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4689999999998888863 345568899999999999999998876
No 184
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.04 E-value=0.007 Score=54.63 Aligned_cols=51 Identities=27% Similarity=0.185 Sum_probs=35.4
Q ss_pred HHHHHHHHHhccC----CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEe
Q 009534 154 STLDRVWRCLTEE----PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVV 207 (532)
Q Consensus 154 ~~~~~l~~~L~~~----~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v 207 (532)
..++.+.+++... ....+-|+|..|+|||+||+.+++... .....++|+.+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~---~~~~~~~~~~~ 90 (202)
T 2w58_A 36 KAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELA---KRNVSSLIVYV 90 (202)
T ss_dssp HHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHH---TTTCCEEEEEH
T ss_pred HHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEEh
Confidence 3445555565543 126788999999999999999999883 33345666654
No 185
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.00 E-value=0.005 Score=63.15 Aligned_cols=46 Identities=28% Similarity=0.318 Sum_probs=40.6
Q ss_pred CcccccHHHH---HHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTL---DRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~---~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++++|.+..+ ..+...+..+....+-++|+.|+||||+|+.+.+..
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh
Confidence 4589998888 778888888888889999999999999999999887
No 186
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.99 E-value=0.0041 Score=60.72 Aligned_cols=46 Identities=28% Similarity=0.435 Sum_probs=38.7
Q ss_pred CcccccHHHHHHHHHHhcc-----CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTE-----EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+++|++..++.+.+++.. .....+-|+|+.|+|||++|+.+++..
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999998888887752 244678899999999999999999877
No 187
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.84 E-value=0.0081 Score=59.74 Aligned_cols=46 Identities=20% Similarity=0.219 Sum_probs=38.7
Q ss_pred CcccccHHHHHHHHHHhcc------------CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTE------------EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+++|.++.++.+.+.+.. ...+-+-|+|+.|+|||++|+.+.+..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999998887742 245678899999999999999998876
No 188
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.83 E-value=0.0055 Score=68.42 Aligned_cols=46 Identities=26% Similarity=0.375 Sum_probs=40.6
Q ss_pred CcccccHHHHHHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+.++||+++++.+++.+......-+.++|..|+|||++|+.+.+..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 4589999999999999987666667899999999999999998876
No 189
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.81 E-value=0.01 Score=58.09 Aligned_cols=46 Identities=22% Similarity=0.324 Sum_probs=37.5
Q ss_pred CcccccHHHHHHHHHHhcc------------CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTE------------EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++++|.++.++.+.+.+.. ...+-+-++|+.|+|||++|+++++..
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 5689999888888877631 124678899999999999999999876
No 190
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.79 E-value=0.0094 Score=59.33 Aligned_cols=46 Identities=22% Similarity=0.314 Sum_probs=37.0
Q ss_pred CcccccHHHHHH---HHHHhccCCc--eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDR---VWRCLTEEPV--GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~---l~~~L~~~~~--~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++++|++..++. +.+.+..+.. +.+-|+|+.|+|||++|+.+.+..
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999988666 4555555433 588999999999999999999988
No 191
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.79 E-value=0.0073 Score=66.53 Aligned_cols=46 Identities=26% Similarity=0.380 Sum_probs=40.2
Q ss_pred CcccccHHHHHHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+.++|++++++.+.+.+......-+-++|..|+|||++|+.+.+..
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999977655557799999999999999998875
No 192
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.78 E-value=0.0081 Score=58.06 Aligned_cols=46 Identities=20% Similarity=0.231 Sum_probs=38.3
Q ss_pred CcccccHHHHHHHHHHhcc--------------CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTE--------------EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+.++|.++.++.+...+.. ....-+-++|..|+|||++|+.+.+..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999998887754 234567799999999999999999877
No 193
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.77 E-value=0.011 Score=57.74 Aligned_cols=46 Identities=24% Similarity=0.375 Sum_probs=38.1
Q ss_pred CcccccHHHHHHHHHHhcc------------CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTE------------EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++++|.++.++.+.+.+.. ...+-+-++|+.|+|||++|+++.+..
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 5689999999999888721 124568899999999999999999987
No 194
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.74 E-value=0.005 Score=61.00 Aligned_cols=46 Identities=17% Similarity=0.135 Sum_probs=38.8
Q ss_pred CcccccHHHHHHHHHHh-ccCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCL-TEEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++++|.+..++.+.+++ ..++...+.|+|+.|+||||+|+.+....
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred HHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999988 66554449999999999999999998854
No 195
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.70 E-value=0.0097 Score=65.56 Aligned_cols=46 Identities=24% Similarity=0.333 Sum_probs=40.7
Q ss_pred CcccccHHHHHHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+.++||+++++.+++.|......-+-++|..|+|||++|+.+....
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 4679999999999999987666667899999999999999998876
No 196
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.68 E-value=0.0029 Score=53.93 Aligned_cols=46 Identities=15% Similarity=0.084 Sum_probs=33.3
Q ss_pred CcccccHHHHHHHHHHhcc--CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTE--EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
-.++|++..++++.+.+.. ....-|-|+|..|+|||++|+.+++..
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 3578998888888887653 233346699999999999999997765
No 197
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.65 E-value=0.0095 Score=58.72 Aligned_cols=46 Identities=22% Similarity=0.372 Sum_probs=39.6
Q ss_pred CcccccHHHHHHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++++|.+..++.+..++..++..-+.++|+.|+||||+|+.+....
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3568998888999888887765558999999999999999999886
No 198
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.64 E-value=0.013 Score=53.03 Aligned_cols=41 Identities=24% Similarity=0.445 Sum_probs=33.3
Q ss_pred cHHHHHHHHHHhcc---CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 152 LQSTLDRVWRCLTE---EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 152 r~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
|++.++.+.+.+.. ....+++|.|..|+||||+++.+....
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45667777777764 356899999999999999999998765
No 199
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.58 E-value=0.0098 Score=55.98 Aligned_cols=46 Identities=26% Similarity=0.236 Sum_probs=35.1
Q ss_pred CcccccHHHHHHHHHHh---cc---------CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCL---TE---------EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L---~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++++|.++.++.+.+.+ .. ...+-+.|+|+.|+||||+|+.+.+..
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 46899988777766543 22 123457899999999999999999877
No 200
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.45 E-value=0.0031 Score=59.77 Aligned_cols=36 Identities=14% Similarity=-0.008 Sum_probs=26.2
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEE
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWE 205 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv 205 (532)
.-.-|.|-+.....|++|.+.+-+.. ...|..+-|=
T Consensus 23 ~w~kv~I~~g~ky~k~~ll~~i~~~~---~~~f~p~~~~ 58 (267)
T 3rw6_A 23 NWFKITIPYGRKYDKAWLLSMIQSKC---SVPFTPIEFH 58 (267)
T ss_dssp CCEEEEETTGGGSCHHHHHHHHHHTC---SSCCCCEEEE
T ss_pred CeEEEEecCccccCHHHHHHHHHHhC---CCCcEeEEEE
Confidence 34567788877888999999997765 3567666554
No 201
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.45 E-value=0.0089 Score=58.82 Aligned_cols=46 Identities=28% Similarity=0.344 Sum_probs=36.4
Q ss_pred CcccccHHHHHHHHHHhcc-----CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTE-----EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+.++|.+..++.+...+.. .....+.++|+.|+||||||+.+.+..
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3568888777776666543 244679999999999999999999987
No 202
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.40 E-value=0.011 Score=56.03 Aligned_cols=33 Identities=21% Similarity=0.318 Sum_probs=17.3
Q ss_pred CCCccEEEEeCCccccCCc----hhcCCCcceeeecc
Q 009534 382 FFSLHKVSIWGSKLRHVTW----LILAPNLKLIQMYD 414 (532)
Q Consensus 382 l~~L~~L~l~~c~L~~l~~----l~~l~~L~~L~l~~ 414 (532)
+++|+.|+|++|++..++. +..+++|+.|+|++
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~ 205 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG 205 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTT
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCC
Confidence 5555666665555544332 23555666666643
No 203
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.38 E-value=0.015 Score=55.40 Aligned_cols=45 Identities=27% Similarity=0.341 Sum_probs=34.0
Q ss_pred CcccccHHHHHHHHHHhcc-------------C-CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTE-------------E-PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~-------------~-~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.++.|.++.++.+.+.+.. . ... +.++|+.|+||||||+.+....
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHHc
Confidence 5678888888887765421 1 223 8999999999999999999876
No 204
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.29 E-value=0.018 Score=56.25 Aligned_cols=46 Identities=13% Similarity=0.032 Sum_probs=39.8
Q ss_pred CcccccHHHHHHHHHHhccCC-ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEP-VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++++|.++.++.+.+++..++ .+++-+.|+.|+|||++|+.+.+..
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 468999999999999998765 4677778889999999999998876
No 205
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.29 E-value=0.012 Score=57.08 Aligned_cols=60 Identities=23% Similarity=0.378 Sum_probs=44.0
Q ss_pred CcccccHHHHHHHHHHhccC---------CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCC
Q 009534 147 PTVVGLQSTLDRVWRCLTEE---------PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSR 209 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~ 209 (532)
..++|.+..++.+...+... ....+.++|..|+|||++|+.+..... ..-...+.+..+.
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~---~~~~~~~~~~~~~ 85 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF---DTEEAMIRIDMTE 85 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHH---SCGGGEEEEEGGG
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHc---CCCcceEEeeccc
Confidence 46789999988888887542 135799999999999999999998872 2222345555544
No 206
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.22 E-value=0.018 Score=57.91 Aligned_cols=46 Identities=20% Similarity=0.233 Sum_probs=38.4
Q ss_pred CcccccHHHHHHHHHHhcc------------CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTE------------EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+++|.+..++.+.+++.. ...+-+-|+|..|+|||++|+.+.+..
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999988731 134678899999999999999998876
No 207
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.21 E-value=0.021 Score=54.24 Aligned_cols=46 Identities=24% Similarity=0.235 Sum_probs=34.8
Q ss_pred CcccccHHHHHHHHH-------Hhc---cCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWR-------CLT---EEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~-------~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..++|....++.+++ .+. ....+-+-|+|+.|+|||++|+.+.+..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 356777766666665 332 3356778899999999999999999976
No 208
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.21 E-value=0.01 Score=56.16 Aligned_cols=46 Identities=22% Similarity=0.171 Sum_probs=35.1
Q ss_pred CcccccHHHHHHHHHHhcc------------CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTE------------EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++++|.++.++.+.+.+.. ...+-+-++|+.|+|||++|+.+++..
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 4689988777777765531 113346799999999999999999987
No 209
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.18 E-value=0.018 Score=58.44 Aligned_cols=46 Identities=22% Similarity=0.290 Sum_probs=37.6
Q ss_pred CcccccHHHHHHHHHHhc----c---------CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLT----E---------EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+++.|.++.++.|.+.+. . ...+=|-++|++|+|||.+|+++.+..
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh
Confidence 467899999888887653 1 135668889999999999999999987
No 210
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.18 E-value=0.02 Score=58.09 Aligned_cols=46 Identities=26% Similarity=0.380 Sum_probs=37.5
Q ss_pred CcccccHHHHHHHHHHhcc-------------CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTE-------------EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+++.|.++.++.|.+.+.- ...+=|-++|++|+|||++|+++.+..
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4678899888888776632 135668889999999999999999988
No 211
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.17 E-value=0.018 Score=57.12 Aligned_cols=46 Identities=24% Similarity=0.375 Sum_probs=37.5
Q ss_pred CcccccHHHHHHHHHHhcc------------CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTE------------EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+++|.++.++.+.+.+.. ...+-+-++|+.|+|||++|+++++..
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 4689999999998887631 123457889999999999999999987
No 212
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.16 E-value=0.019 Score=52.15 Aligned_cols=38 Identities=26% Similarity=0.321 Sum_probs=30.2
Q ss_pred HHHHHHHHhcc--CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 155 TLDRVWRCLTE--EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 155 ~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
-+++|.+.+.. +...+++|+|..|.|||||++.+....
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45556666553 356899999999999999999998776
No 213
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.15 E-value=0.024 Score=58.06 Aligned_cols=46 Identities=22% Similarity=0.324 Sum_probs=38.2
Q ss_pred CcccccHHHHHHHHHHhcc------------CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTE------------EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++++|.++.++.+.+.+.. ...+-+-++|+.|+|||++|+++++..
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 5689999999998887631 234678899999999999999999876
No 214
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.13 E-value=0.019 Score=58.23 Aligned_cols=46 Identities=33% Similarity=0.421 Sum_probs=37.5
Q ss_pred CcccccHHHHHHHHHHhcc-------------CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTE-------------EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+++.|.++.++.|.+.+.- ...+=+-++|++|+|||++|+++.+..
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999988888876632 135558899999999999999999987
No 215
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.12 E-value=0.014 Score=55.12 Aligned_cols=46 Identities=15% Similarity=0.182 Sum_probs=33.9
Q ss_pred CcccccHHHHHHHHHHhcc--CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTE--EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+.++|.+..+..+.+.+.. ....-+-|+|..|+|||++|+.+++..
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 4578999888888776642 233556799999999999999999876
No 216
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.07 E-value=0.033 Score=57.75 Aligned_cols=44 Identities=14% Similarity=0.144 Sum_probs=37.7
Q ss_pred CcccccHHHHHHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+.++|.++.++.+...+..+ .-+-++|++|+|||++|+.+.+..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHH
Confidence 56899999998888887654 357789999999999999999876
No 217
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.07 E-value=0.012 Score=51.32 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=20.3
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+|.|.|+.|+||||+|+.+ ...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 47899999999999999999 544
No 218
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.98 E-value=0.024 Score=51.90 Aligned_cols=39 Identities=23% Similarity=0.336 Sum_probs=30.9
Q ss_pred HHHHHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 154 STLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 154 ~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+..+.+.+.+.......|.|+|.+|+|||||+..+....
T Consensus 24 ~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 24 RLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 344555555555678899999999999999999998876
No 219
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.92 E-value=0.099 Score=53.38 Aligned_cols=45 Identities=27% Similarity=0.302 Sum_probs=31.4
Q ss_pred ccc-ccH--HHHHHHHHHhccCC-ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 148 TVV-GLQ--STLDRVWRCLTEEP-VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 148 ~~v-Gr~--~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+|+ |.. .....+.......+ ...+.|+|+.|+||||||+.+++..
T Consensus 106 ~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 106 NFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp GCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 445 633 23334444444433 6788999999999999999999877
No 220
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.90 E-value=0.02 Score=57.34 Aligned_cols=46 Identities=26% Similarity=0.294 Sum_probs=37.0
Q ss_pred CcccccHHHHHHHHHHhcc-------------CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTE-------------EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+++.|.++.++++.+.+.- ...+=+-++|++|+|||.+|+++.+..
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh
Confidence 4578899888888776532 134567789999999999999999987
No 221
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=94.89 E-value=0.024 Score=54.85 Aligned_cols=46 Identities=13% Similarity=0.229 Sum_probs=36.8
Q ss_pred CcccccHHHHHHHHHHhcc--CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTE--EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+.++|....+.++.+.+.. ....-+-|+|..|+|||++|+.+++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 4579999888888887753 334456799999999999999999865
No 222
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.88 E-value=0.015 Score=50.64 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=22.0
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+|.|.|+.|+||||+|+.+....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998876
No 223
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.85 E-value=0.025 Score=57.41 Aligned_cols=46 Identities=24% Similarity=0.364 Sum_probs=37.4
Q ss_pred CcccccHHHHHHHHHHhcc-------------CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTE-------------EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+++.|.++.+++|.+.+.- ...+=|-++|++|+|||++|+++.+..
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 3578899888888776521 245667899999999999999999987
No 224
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.77 E-value=0.013 Score=50.15 Aligned_cols=39 Identities=15% Similarity=0.124 Sum_probs=29.1
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeC
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVS 208 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~ 208 (532)
.-..+.|+|..|+|||||++.++... .. ..+ ..+++...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~-~~-~g~-~~~~~~~~ 73 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA-LE-AGK-NAAYIDAA 73 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH-HT-TTC-CEEEEETT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH-Hh-cCC-cEEEEcHH
Confidence 45689999999999999999999987 32 122 25666543
No 225
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.77 E-value=0.017 Score=50.76 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=22.2
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+|.|.|+.|+||||+|+.+....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 578999999999999999998876
No 226
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.71 E-value=0.024 Score=51.73 Aligned_cols=44 Identities=20% Similarity=0.246 Sum_probs=34.4
Q ss_pred ccccHHHHHHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 149 VVGLQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 149 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+-+.++..+.+.+.+...+..++.|+|.+|+|||||+..+....
T Consensus 11 l~~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 11 LAENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp CHHHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HhhcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34445556666666655678999999999999999999998876
No 227
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.68 E-value=0.036 Score=54.38 Aligned_cols=43 Identities=26% Similarity=0.274 Sum_probs=32.6
Q ss_pred cccHHHHHHHHHHhc----cCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 150 VGLQSTLDRVWRCLT----EEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 150 vGr~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
|+.+.-++.+++.+. .+....|.++|+.|+||||+++.+....
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 444555666666653 3456779999999999999999988876
No 228
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.67 E-value=0.024 Score=55.49 Aligned_cols=44 Identities=23% Similarity=0.372 Sum_probs=37.7
Q ss_pred CcccccHHHHHHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+.++|+++.++.+...+..+ .-+-++|..|+|||++|+.+.+..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred cceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHh
Confidence 46899999999988888764 357789999999999999998876
No 229
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.58 E-value=0.019 Score=51.66 Aligned_cols=26 Identities=31% Similarity=0.299 Sum_probs=23.4
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
...+|.|+|+.|+||||+|+.+....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 35689999999999999999999876
No 230
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.58 E-value=0.034 Score=55.94 Aligned_cols=46 Identities=30% Similarity=0.429 Sum_probs=37.2
Q ss_pred CcccccHHHHHHHHHHhcc-------------CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTE-------------EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+++.|.++.+++|.+.+.- ...+=|-++|++|+|||.+|+++.+..
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~ 240 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT 240 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh
Confidence 4578899888888776531 135668899999999999999999987
No 231
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=94.53 E-value=0.11 Score=47.00 Aligned_cols=46 Identities=22% Similarity=0.154 Sum_probs=34.5
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCHHHHHH
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQLGKIQE 218 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~~~~l~~ 218 (532)
.-.++.|+|.+|+||||++..+.... -..++|++....++...+.+
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~~~------~~~v~~i~~~~~~~~~~~~~ 64 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGLLS------GKKVAYVDTEGGFSPERLVQ 64 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH------CSEEEEEESSCCCCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHc------CCcEEEEECCCCCCHHHHHH
Confidence 45689999999999999999998722 14688888766556655443
No 232
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.53 E-value=0.046 Score=51.15 Aligned_cols=46 Identities=24% Similarity=0.230 Sum_probs=32.8
Q ss_pred CcccccHHHHHHHHHHhc---cC---------CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLT---EE---------PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~---~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++++|.++.++++.+... .. -.+=+.|+|+.|+||||||+.+....
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 467888766665554432 10 01228899999999999999999876
No 233
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.52 E-value=0.02 Score=51.03 Aligned_cols=26 Identities=31% Similarity=0.307 Sum_probs=22.7
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-.+++|+|+.|+||||+++.+....
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcc
Confidence 35789999999999999999997754
No 234
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.50 E-value=0.024 Score=49.81 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=20.6
Q ss_pred eEEEEecCCCCcHHHHHHHHHH
Q 009534 169 GIVGLYGMGGVGKTTLLTQINN 190 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~ 190 (532)
.+|.|.|+.|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 235
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.50 E-value=0.019 Score=50.18 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=22.1
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+|+|+|+.|+||||+++.+....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998876
No 236
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.45 E-value=0.023 Score=50.31 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=22.5
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
-++++|+|+.|+|||||++.+....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998865
No 237
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.35 E-value=0.043 Score=52.63 Aligned_cols=27 Identities=26% Similarity=0.196 Sum_probs=24.0
Q ss_pred CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 166 EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 166 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+...+|+|.|..|+||||+|+.+....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999987766
No 238
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.34 E-value=0.024 Score=50.16 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=22.5
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+.|.++|+.|+||||+|+.+....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999998876
No 239
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.32 E-value=0.025 Score=50.29 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=22.2
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+|.|.|+.|+||||+|+.+....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999887
No 240
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.32 E-value=0.041 Score=54.64 Aligned_cols=45 Identities=20% Similarity=0.172 Sum_probs=36.8
Q ss_pred cccccHHHHHHHHHHhc-------------c--CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 148 TVVGLQSTLDRVWRCLT-------------E--EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 148 ~~vGr~~~~~~l~~~L~-------------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.++|.+..++.+...+. . .....+-++|+.|+|||++|+.+.+..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 46899999998888772 1 134568899999999999999999876
No 241
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.30 E-value=0.031 Score=50.27 Aligned_cols=28 Identities=25% Similarity=0.475 Sum_probs=24.8
Q ss_pred cCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 165 EEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 165 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.....+|.|+|+.|.||||+++.+....
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3457899999999999999999998876
No 242
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.27 E-value=0.046 Score=54.59 Aligned_cols=46 Identities=17% Similarity=0.187 Sum_probs=36.4
Q ss_pred CcccccHHHHHHHHHHhcc------------------------------CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTE------------------------------EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~------------------------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..++|.++.++.+...+.. .....+-++|+.|+|||++|+.+.+..
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999888888877620 123467899999999999999999876
No 243
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.26 E-value=0.15 Score=48.97 Aligned_cols=84 Identities=14% Similarity=0.097 Sum_probs=45.7
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCC-CCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHH
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSR-DLQLGKIQESIAKKIGLCNESWDSKSFDEKAQEIFK 245 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~-~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 245 (532)
+..+++++|.+|+||||++..+.... ..... ..+..+.... .....+-+.......+.+.. ...+.......+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l-~~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~--~~~~~~~l~~al~- 178 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAIS-MLEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLE--VCYTKEEFQQAKE- 178 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH-HHTTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCC--BCSSHHHHHHHHH-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HHhcC-CEEEEEecCcccchHHHHHHHHHHhcCCCeE--ecCCHHHHHHHHH-
Confidence 45799999999999999999998766 21111 2345555322 22233323333333333221 1223334433333
Q ss_pred HhcCCcEEEe
Q 009534 246 TMRNTKFLIS 255 (532)
Q Consensus 246 ~L~~kr~LlV 255 (532)
.+.+..++|+
T Consensus 179 ~~~~~dlvIi 188 (296)
T 2px0_A 179 LFSEYDHVFV 188 (296)
T ss_dssp HGGGSSEEEE
T ss_pred HhcCCCEEEE
Confidence 3466788888
No 244
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.20 E-value=0.023 Score=51.22 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=22.8
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..+|.|.|+.|+||||+|+.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998876
No 245
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.19 E-value=0.027 Score=50.01 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=22.2
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+|.|.|+.|+||||+++.+....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999998876
No 246
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=94.16 E-value=0.063 Score=51.07 Aligned_cols=45 Identities=29% Similarity=0.401 Sum_probs=33.4
Q ss_pred CcccccHHHHHHHHHHhc---cC----------CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLT---EE----------PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~---~~----------~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++++|.++.++++.+... .. ... +.|+|+.|+||||||+.+....
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~g-vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCE-EEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCcChHHHHHHHHHHHc
Confidence 467898876666555432 10 123 8899999999999999999877
No 247
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.14 E-value=0.03 Score=50.43 Aligned_cols=27 Identities=33% Similarity=0.519 Sum_probs=23.5
Q ss_pred CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 166 EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 166 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
....+++|+|+.|+||||+++.+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 356799999999999999999998765
No 248
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.14 E-value=0.029 Score=52.39 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=23.5
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+..+|+|+|+.|+||||+++.+....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999999766
No 249
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.13 E-value=0.11 Score=52.19 Aligned_cols=76 Identities=14% Similarity=0.234 Sum_probs=35.1
Q ss_pred CCCccEEEEeCCccccCCc--hhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccccC
Q 009534 382 FFSLHKVSIWGSKLRHVTW--LILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIY 459 (532)
Q Consensus 382 l~~L~~L~l~~c~L~~l~~--l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~ 459 (532)
+++|+.+.+.. +++.++. +..+.+|+.+.|.+ .++.|.. ..+..+.+|+.+.|-+ +++.|.
T Consensus 287 c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~------------~aF~~C~~L~~i~ip~--sv~~I~ 349 (394)
T 4gt6_A 287 CPALQDIEFSS-RITELPESVFAGCISLKSIDIPE--GITQILD------------DAFAGCEQLERIAIPS--SVTKIP 349 (394)
T ss_dssp CTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCT--TCCEECT------------TTTTTCTTCCEEEECT--TCCBCC
T ss_pred ccccccccCCC-cccccCceeecCCCCcCEEEeCC--cccEehH------------hHhhCCCCCCEEEECc--ccCEEh
Confidence 44555555532 2333322 34455555555532 2344432 2455555666665532 344554
Q ss_pred CCC-cCCCCccEEeec
Q 009534 460 PRA-LPFPHLKELHVT 474 (532)
Q Consensus 460 ~~~-~~~p~L~~L~i~ 474 (532)
... ..|++|+.+.+.
T Consensus 350 ~~aF~~C~~L~~i~~~ 365 (394)
T 4gt6_A 350 ESAFSNCTALNNIEYS 365 (394)
T ss_dssp GGGGTTCTTCCEEEES
T ss_pred HhHhhCCCCCCEEEEC
Confidence 422 245556665554
No 250
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.13 E-value=0.063 Score=52.28 Aligned_cols=37 Identities=30% Similarity=0.326 Sum_probs=28.4
Q ss_pred HHHHHHHhccC--CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 156 LDRVWRCLTEE--PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 156 ~~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
...+..++..+ ....+-|+|+.|+||||+|+.+++..
T Consensus 23 ~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 23 YEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp HHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 44445555443 35678899999999999999999877
No 251
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.13 E-value=0.032 Score=48.85 Aligned_cols=25 Identities=24% Similarity=0.482 Sum_probs=22.5
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
-.+++|+|+.|+||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 252
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.12 E-value=0.032 Score=49.66 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=22.8
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..+|.|.|+.|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 5689999999999999999998876
No 253
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.09 E-value=0.034 Score=49.29 Aligned_cols=26 Identities=35% Similarity=0.445 Sum_probs=23.5
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
...+|.|.|+.|+||||+++.+....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999998876
No 254
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.07 E-value=0.029 Score=50.34 Aligned_cols=23 Identities=26% Similarity=0.629 Sum_probs=21.6
Q ss_pred EEEEecCCCCcHHHHHHHHHHhc
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.|.|.|+.|+||||+++.+....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999877
No 255
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.04 E-value=0.029 Score=49.49 Aligned_cols=25 Identities=36% Similarity=0.395 Sum_probs=22.5
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.++|.|.|+.|+||||+|+.+....
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4678899999999999999998876
No 256
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=94.03 E-value=0.061 Score=55.26 Aligned_cols=46 Identities=24% Similarity=0.261 Sum_probs=35.8
Q ss_pred CcccccHHHHHHHHHH---hccC--CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRC---LTEE--PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~---L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++++|.++.++.+..+ +..+ ..+-+-++|+.|+|||++|+.+.+..
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 5689999887765444 4333 23567899999999999999999987
No 257
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.02 E-value=0.027 Score=55.47 Aligned_cols=46 Identities=20% Similarity=0.303 Sum_probs=34.3
Q ss_pred CcccccHHHHHHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++++|.+..++.+...+......-+-|+|..|+|||++|+.+.+..
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhC
Confidence 4579998766655444433333348899999999999999999876
No 258
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.01 E-value=0.03 Score=50.38 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=22.3
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
-.+++|+|+.|+|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998764
No 259
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.99 E-value=0.034 Score=49.42 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=21.1
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+++|+|+.|+||||+++.+....
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHhccc
Confidence 478999999999999999997643
No 260
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.95 E-value=0.036 Score=49.32 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=22.6
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..+|.|.|+.|+||||+|+.+....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998876
No 261
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=93.94 E-value=0.053 Score=56.12 Aligned_cols=46 Identities=24% Similarity=0.342 Sum_probs=37.8
Q ss_pred CcccccHHHHHHHHHHhcc-------------CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTE-------------EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+++|.+..++.+.+++.. ...+-+-|+|..|+|||++|+++.+..
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 3579999999998887642 234568899999999999999998876
No 262
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.93 E-value=0.031 Score=50.50 Aligned_cols=26 Identities=31% Similarity=0.516 Sum_probs=23.3
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..++|.|+|+.|+||||+++.+....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45789999999999999999998876
No 263
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.89 E-value=0.04 Score=49.58 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=23.5
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+..+|.|.|+.|+||||+|+.+....
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 46789999999999999999998876
No 264
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.86 E-value=0.03 Score=49.78 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=21.9
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++++|+|+.|+|||||++.+....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999998765
No 265
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.81 E-value=0.035 Score=49.48 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=23.4
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+..+|.|.|+.|+||||+|+.+....
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998876
No 266
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.78 E-value=0.031 Score=49.00 Aligned_cols=23 Identities=26% Similarity=0.444 Sum_probs=21.4
Q ss_pred EEEEecCCCCcHHHHHHHHHHhc
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.|.|.|+.|+||||+|+.+....
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998877
No 267
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.77 E-value=0.042 Score=49.26 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=22.9
Q ss_pred CCceEEEEecCCCCcHHHHHHHHHHh
Q 009534 166 EPVGIVGLYGMGGVGKTTLLTQINNS 191 (532)
Q Consensus 166 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 191 (532)
++..+|+|.|+.|+||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 35789999999999999999998764
No 268
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.77 E-value=0.038 Score=50.11 Aligned_cols=26 Identities=27% Similarity=0.241 Sum_probs=23.5
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
...+++|+|+.|+||||+++.+....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45789999999999999999998876
No 269
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.75 E-value=0.04 Score=49.91 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=23.3
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
...+++|+|..|.|||||++.+....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998875
No 270
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.75 E-value=0.037 Score=48.90 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=21.1
Q ss_pred EEEEecCCCCcHHHHHHHHHHhc
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.++|+|..|+|||||++.+....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 271
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.73 E-value=0.038 Score=48.06 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=22.5
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
...+|.|.|+.|+||||+|+.+....
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998876
No 272
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.73 E-value=0.037 Score=53.79 Aligned_cols=41 Identities=22% Similarity=0.370 Sum_probs=29.8
Q ss_pred CCceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCC
Q 009534 166 EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSR 209 (532)
Q Consensus 166 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~ 209 (532)
++.+||+|.|-|||||||.+..+.-... . .. ..+.-|+...
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA-~-~G-kkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFS-I-LG-KRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH-H-TT-CCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHH-H-CC-CeEEEEecCC
Confidence 4689999999999999999998877663 1 11 2455566553
No 273
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.70 E-value=0.035 Score=50.00 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=20.3
Q ss_pred eEEEEecCCCCcHHHHHHHHHH
Q 009534 169 GIVGLYGMGGVGKTTLLTQINN 190 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~ 190 (532)
.+|+|.|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999987
No 274
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.70 E-value=0.044 Score=49.51 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=22.9
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..+|.|.|+.|+||||+|+.+....
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999999887
No 275
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.69 E-value=0.041 Score=49.53 Aligned_cols=25 Identities=32% Similarity=0.302 Sum_probs=22.4
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..+++|+|+.|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 276
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=93.69 E-value=0.014 Score=52.03 Aligned_cols=36 Identities=8% Similarity=0.119 Sum_probs=18.3
Q ss_pred cCCCeEEEecCCCCCccccc----cccccccccceeeccc
Q 009534 323 SNTPSLSLTNCRSLSSLSVL----TLASLRHLEALDMRYC 358 (532)
Q Consensus 323 ~~L~~L~l~~c~~l~~l~~~----~l~~l~~L~~L~i~~c 358 (532)
++|++|+|++|..+..-... .+...++|++|++++|
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n 75 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT 75 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC
Confidence 44777777665334432111 1333455666666655
No 277
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.67 E-value=0.043 Score=48.66 Aligned_cols=25 Identities=24% Similarity=0.232 Sum_probs=22.5
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHh
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNS 191 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~ 191 (532)
....|.|+|+.|+||||+++.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999999887
No 278
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.67 E-value=0.04 Score=51.75 Aligned_cols=24 Identities=29% Similarity=0.295 Sum_probs=21.9
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+|.|.|+.|+||||+|+.+....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999998876
No 279
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.66 E-value=0.038 Score=50.63 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=22.1
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+|+|+|+.|+||||+|+.+....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998876
No 280
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.57 E-value=0.034 Score=48.70 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=19.8
Q ss_pred CceEEEEecCCCCcHHHHHHHHH
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQIN 189 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~ 189 (532)
.-.+++|+|+.|.|||||++.++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 34689999999999999999644
No 281
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.54 E-value=0.046 Score=48.33 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=22.3
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
...|.+.|+.|+||||+|+.+....
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998766
No 282
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.53 E-value=0.18 Score=46.49 Aligned_cols=57 Identities=14% Similarity=0.219 Sum_probs=38.9
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCC----CCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPN----NFDFVIWEVVSRDLQLGKIQESIAKKIG 225 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~F~~~~wv~v~~~~~~~~l~~~i~~~l~ 225 (532)
.-.++.|+|..|+|||||++.+..... ... .-..++|+.....++...+. .++..++
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~-~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g 83 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQ-LPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYG 83 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTT-SCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHh-CchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcC
Confidence 457899999999999999999988641 111 13578899877665555443 2334443
No 283
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.52 E-value=0.035 Score=49.06 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=21.8
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+|.|.|+.|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998876
No 284
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.51 E-value=0.043 Score=49.52 Aligned_cols=22 Identities=45% Similarity=0.536 Sum_probs=20.1
Q ss_pred eEEEEecCCCCcHHHHHHHHHH
Q 009534 169 GIVGLYGMGGVGKTTLLTQINN 190 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~ 190 (532)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999965
No 285
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.50 E-value=0.081 Score=51.41 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=23.4
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
...+|+|.|..|+||||+++.+....
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999997766
No 286
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=93.43 E-value=0.049 Score=52.34 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=23.3
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.++.+-++|++|+|||++|+++++..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678889999999999999999987
No 287
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.43 E-value=0.043 Score=49.04 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=22.9
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..+|.|.|+.|+||||+|+.+....
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998876
No 288
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.43 E-value=0.31 Score=49.37 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=23.8
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
...+|.++|.+|+||||++..+....
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 47899999999999999999998877
No 289
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.42 E-value=0.039 Score=49.68 Aligned_cols=25 Identities=36% Similarity=0.428 Sum_probs=21.8
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.++++|+|+.|+|||||++.+....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3578999999999999999998765
No 290
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.41 E-value=0.04 Score=47.98 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=21.9
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+|.|.|+.|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998876
No 291
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.40 E-value=0.39 Score=48.56 Aligned_cols=85 Identities=16% Similarity=0.105 Sum_probs=45.8
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCH--HHHHHHHHHHhcCCCCC-CCCCCHHHHHHHH
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQL--GKIQESIAKKIGLCNES-WDSKSFDEKAQEI 243 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~~--~~l~~~i~~~l~~~~~~-~~~~~~~~~~~~l 243 (532)
..++|.++|.+|+||||++..+.... .. ... .+..++.. .+.. .+-+.......+.+... ....+........
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l-~~-~G~-kVllv~~D-~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~a 171 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY-KK-RGY-KVGLVAAD-VYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKG 171 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH-HH-TTC-CEEEEEEC-CSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HH-cCC-eEEEEecC-ccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHH
Confidence 46899999999999999999998776 22 222 34444432 2222 22233333443332211 0223444443333
Q ss_pred HHHhc--CCcEEEe
Q 009534 244 FKTMR--NTKFLIS 255 (532)
Q Consensus 244 ~~~L~--~kr~LlV 255 (532)
...+. +..++||
T Consensus 172 l~~a~~~~~DvvII 185 (433)
T 3kl4_A 172 VDIFVKNKMDIIIV 185 (433)
T ss_dssp HHHTTTTTCSEEEE
T ss_pred HHHHHhcCCCEEEE
Confidence 34443 5677887
No 292
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=93.38 E-value=0.24 Score=49.08 Aligned_cols=76 Identities=12% Similarity=0.208 Sum_probs=35.0
Q ss_pred cCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCC--c
Q 009534 323 SNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVT--W 400 (532)
Q Consensus 323 ~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~--~ 400 (532)
.+|+.+.+.. .+..+....+.++.+|+.+.+.. .++.+...... .+.+|+.+.+... ++.++ .
T Consensus 217 ~~l~~i~~~~--~~~~i~~~~f~~~~~L~~i~lp~--~v~~I~~~aF~----------~~~~l~~i~l~~~-i~~i~~~a 281 (379)
T 4h09_A 217 KNLKKITITS--GVTTLGDGAFYGMKALDEIAIPK--NVTSIGSFLLQ----------NCTALKTLNFYAK-VKTVPYLL 281 (379)
T ss_dssp SSCSEEECCT--TCCEECTTTTTTCSSCCEEEECT--TCCEECTTTTT----------TCTTCCEEEECCC-CSEECTTT
T ss_pred cccceeeecc--ceeEEccccccCCccceEEEcCC--CccEeCccccc----------eeehhcccccccc-ceeccccc
Confidence 4455555432 34444444455555666665543 24444332222 3455555555432 22222 1
Q ss_pred hhcCCCcceeeec
Q 009534 401 LILAPNLKLIQMY 413 (532)
Q Consensus 401 l~~l~~L~~L~l~ 413 (532)
+..+++|+.+.+.
T Consensus 282 F~~c~~L~~i~l~ 294 (379)
T 4h09_A 282 CSGCSNLTKVVMD 294 (379)
T ss_dssp TTTCTTCCEEEEC
T ss_pred ccccccccccccc
Confidence 3445555555553
No 293
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.36 E-value=0.048 Score=49.28 Aligned_cols=26 Identities=31% Similarity=0.511 Sum_probs=22.7
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
...+|+|+|+.|+||||+|+.+....
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35789999999999999999997654
No 294
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.36 E-value=0.049 Score=48.29 Aligned_cols=25 Identities=32% Similarity=0.372 Sum_probs=22.7
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..+|.|.|+.|+||||+|+.+....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998876
No 295
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.35 E-value=0.044 Score=48.75 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=21.6
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
|.|.|.|+.|+|||||++.+..+.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 468899999999999999998876
No 296
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=93.34 E-value=0.072 Score=54.79 Aligned_cols=46 Identities=20% Similarity=0.229 Sum_probs=35.0
Q ss_pred CcccccHHHHHHHHHHhc---cC---------CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLT---EE---------PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~---~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+++|.++.++++.+.+. .. -.+-+.++|+.|+|||++|+.+.+..
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999887777666542 21 12347799999999999999999987
No 297
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.31 E-value=0.048 Score=48.44 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=21.3
Q ss_pred EEEEecCCCCcHHHHHHHHHHhc
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998865
No 298
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.31 E-value=0.083 Score=50.56 Aligned_cols=26 Identities=31% Similarity=0.241 Sum_probs=23.3
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
...+|.|.|+.|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998765
No 299
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.30 E-value=0.05 Score=47.14 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=21.3
Q ss_pred EEEEecCCCCcHHHHHHHHHHhc
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.|.|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 300
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.28 E-value=0.034 Score=48.96 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=18.5
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..+|.|.|+.|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998876
No 301
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.27 E-value=0.056 Score=50.94 Aligned_cols=25 Identities=28% Similarity=0.519 Sum_probs=22.6
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..+|.|.|+.|+||||+|+.+....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998874
No 302
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.26 E-value=0.4 Score=53.37 Aligned_cols=45 Identities=29% Similarity=0.485 Sum_probs=36.9
Q ss_pred cccccHHHHHHHHHHhccC---------CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 148 TVVGLQSTLDRVWRCLTEE---------PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 148 ~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.++|.+..++.+...+... ....+-|+|..|+|||++|+.+.+..
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999888888777431 23578899999999999999999877
No 303
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.22 E-value=0.053 Score=48.71 Aligned_cols=26 Identities=27% Similarity=0.261 Sum_probs=23.1
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
...+|.|.|+.|+||||+|+.+....
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999998876
No 304
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.21 E-value=0.057 Score=48.48 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=23.4
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..++++|+|+.|+|||||++.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 46789999999999999999998775
No 305
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=93.20 E-value=0.33 Score=47.76 Aligned_cols=81 Identities=17% Similarity=0.139 Sum_probs=51.2
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCC---CCCCCHHHHHHHH
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQLGKIQESIAKKIGLCNES---WDSKSFDEKAQEI 243 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~---~~~~~~~~~~~~l 243 (532)
.-.++.|.|..|+||||||..+..... ..=..++|++....++.. .++.++...+. ....+.++....+
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~---~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~ 131 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQ---KMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIV 131 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHH---HTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHH
Confidence 457999999999999999999988762 111357888877666654 44555543221 1344556655555
Q ss_pred HHHhc--CCcEEEe
Q 009534 244 FKTMR--NTKFLIS 255 (532)
Q Consensus 244 ~~~L~--~kr~LlV 255 (532)
...++ .-++++|
T Consensus 132 ~~l~~~~~~dlvVI 145 (356)
T 3hr8_A 132 DELVRSGVVDLIVV 145 (356)
T ss_dssp HHHHHTSCCSEEEE
T ss_pred HHHhhhcCCCeEEe
Confidence 55443 2345555
No 306
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=93.18 E-value=0.31 Score=48.37 Aligned_cols=76 Identities=13% Similarity=0.211 Sum_probs=32.9
Q ss_pred cCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCCc--
Q 009534 323 SNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVTW-- 400 (532)
Q Consensus 323 ~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~~-- 400 (532)
.+|+.+.+.. .++.+....+.++.+|+.+.+.. +++.++..... .+++|+.+.+.++.++.++.
T Consensus 240 ~~L~~i~lp~--~v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF~----------~c~~L~~i~l~~~~i~~I~~~a 305 (379)
T 4h09_A 240 KALDEIAIPK--NVTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLCS----------GCSNLTKVVMDNSAIETLEPRV 305 (379)
T ss_dssp SSCCEEEECT--TCCEECTTTTTTCTTCCEEEECC--CCSEECTTTTT----------TCTTCCEEEECCTTCCEECTTT
T ss_pred ccceEEEcCC--CccEeCccccceeehhccccccc--cceeccccccc----------cccccccccccccccceehhhh
Confidence 3344444432 24444444444444555554432 33333332222 34555555554444444332
Q ss_pred hhcCCCcceeee
Q 009534 401 LILAPNLKLIQM 412 (532)
Q Consensus 401 l~~l~~L~~L~l 412 (532)
+..+.+|+.+.|
T Consensus 306 F~~c~~L~~i~l 317 (379)
T 4h09_A 306 FMDCVKLSSVTL 317 (379)
T ss_dssp TTTCTTCCEEEC
T ss_pred hcCCCCCCEEEc
Confidence 344455555554
No 307
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.18 E-value=0.068 Score=54.28 Aligned_cols=46 Identities=20% Similarity=0.231 Sum_probs=37.0
Q ss_pred CcccccHHHHHHHHHHhcc--------------CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTE--------------EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..++|.++.++.+...+.. ...+-+-++|+.|+||||+|+.+....
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 4689999888888777632 124558899999999999999999877
No 308
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.16 E-value=0.059 Score=48.23 Aligned_cols=26 Identities=27% Similarity=0.489 Sum_probs=23.4
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
...+|+|.|+.|+||||+|+.+....
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 46799999999999999999998764
No 309
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.13 E-value=0.053 Score=49.09 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=23.3
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+..+|.|.|+.|+||||+|+.+....
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998876
No 310
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.11 E-value=0.063 Score=50.28 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=23.5
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
...+|+|.|+.|+||||+|+.+....
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 56799999999999999999998865
No 311
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.07 E-value=0.055 Score=48.90 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=22.8
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..+|.|.|+.|+||||+|+.+....
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998875
No 312
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.05 E-value=0.06 Score=47.03 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=23.1
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..++++|.|..|+||||++..+....
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 35789999999999999999998876
No 313
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.03 E-value=0.056 Score=50.67 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=23.4
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
...+|+|+|+.|+||||+++.+....
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 35689999999999999999999876
No 314
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.03 E-value=0.064 Score=52.02 Aligned_cols=27 Identities=26% Similarity=0.279 Sum_probs=24.1
Q ss_pred CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 166 EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 166 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
....+++|.|..|+|||||++.+..-.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 356799999999999999999998876
No 315
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.03 E-value=0.058 Score=48.04 Aligned_cols=23 Identities=22% Similarity=0.491 Sum_probs=21.3
Q ss_pred EEEEecCCCCcHHHHHHHHHHhc
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.|+|.|+.|+||||+++.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998876
No 316
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.02 E-value=0.067 Score=49.82 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=23.1
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
...+|+|.|..|.||||+++.+....
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999997754
No 317
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=92.98 E-value=0.023 Score=50.50 Aligned_cols=13 Identities=31% Similarity=0.358 Sum_probs=5.9
Q ss_pred CCccEEEEeCCcc
Q 009534 383 FSLHKVSIWGSKL 395 (532)
Q Consensus 383 ~~L~~L~l~~c~L 395 (532)
++|++|+|++|.+
T Consensus 65 ~~L~~L~Ls~n~i 77 (185)
T 1io0_A 65 TYVKKFSIVGTRS 77 (185)
T ss_dssp CSCCEEECTTSCC
T ss_pred CCcCEEECcCCCC
Confidence 3444444444433
No 318
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.98 E-value=0.062 Score=48.19 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=22.4
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..+|.|.|+.|+||||+++.+....
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998765
No 319
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.98 E-value=0.078 Score=49.66 Aligned_cols=26 Identities=31% Similarity=0.313 Sum_probs=23.5
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
...+|.+.|+.|+||||+|+.+....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998876
No 320
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.98 E-value=0.058 Score=48.80 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=23.2
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 35689999999999999999998765
No 321
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=92.94 E-value=0.048 Score=60.20 Aligned_cols=46 Identities=26% Similarity=0.344 Sum_probs=37.5
Q ss_pred CcccccHHHHHHHHHHhcc-------------CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTE-------------EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+++|.+..++++.+++.. ....-+.++|..|+||||||+.+....
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 3578998888888887642 234578999999999999999998876
No 322
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.92 E-value=0.72 Score=46.71 Aligned_cols=87 Identities=17% Similarity=0.173 Sum_probs=47.0
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCC-CCCHHHHHHHHHHHhcCCCCCC-CCCCHHHHHHHHH
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSR-DLQLGKIQESIAKKIGLCNESW-DSKSFDEKAQEIF 244 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~-~~~~~~l~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 244 (532)
..++|.++|.+|+||||++..+.... ..+.. ..+.-|+... .....+.+.......+.+.-.. ...+.........
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l-~~~~G-~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l 176 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFL-REKHK-KKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAAL 176 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHH-HHTSC-CCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HHhcC-CeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHH
Confidence 46899999999999999999998777 22212 2445555432 2233333333333333221100 1234444433333
Q ss_pred HHh--cCCcEEEe
Q 009534 245 KTM--RNTKFLIS 255 (532)
Q Consensus 245 ~~L--~~kr~LlV 255 (532)
+.+ .+-.|+||
T Consensus 177 ~~~~~~~~D~VII 189 (433)
T 2xxa_A 177 KEAKLKFYDVLLV 189 (433)
T ss_dssp HHHHHTTCSEEEE
T ss_pred HHHHhCCCCEEEE
Confidence 333 35578888
No 323
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=92.88 E-value=0.35 Score=47.58 Aligned_cols=81 Identities=16% Similarity=0.163 Sum_probs=50.0
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCC---CCCCCHHHHHHHH
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQLGKIQESIAKKIGLCNES---WDSKSFDEKAQEI 243 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~---~~~~~~~~~~~~l 243 (532)
.-.++.|.|.+|+||||||..+..... ..=..++|++....++.. .+..++...+. ....+.++....+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~---~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~ 131 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQ---AAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIA 131 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH---HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 457899999999999999999886652 122468899887766653 24445543211 1233455555555
Q ss_pred HHHhcC--CcEEEe
Q 009534 244 FKTMRN--TKFLIS 255 (532)
Q Consensus 244 ~~~L~~--kr~LlV 255 (532)
....+. -+.++|
T Consensus 132 ~~l~~~~~~~lIVI 145 (349)
T 2zr9_A 132 DMLVRSGALDIIVI 145 (349)
T ss_dssp HHHHTTTCCSEEEE
T ss_pred HHHHhcCCCCEEEE
Confidence 544443 345555
No 324
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.87 E-value=0.032 Score=50.61 Aligned_cols=24 Identities=29% Similarity=0.688 Sum_probs=21.7
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+|+|.|+.|+||||+++.+....
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 378999999999999999998776
No 325
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.87 E-value=0.071 Score=46.06 Aligned_cols=27 Identities=37% Similarity=0.333 Sum_probs=23.6
Q ss_pred CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 166 EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 166 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..-.+++++|..|.|||||++.+..-.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 345799999999999999999998765
No 326
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.86 E-value=0.07 Score=48.72 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=24.4
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+.++|-|.|++|+||||.|+.+..+.
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999887
No 327
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.86 E-value=0.059 Score=49.50 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=22.6
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
...|.|.|+.|+||||+|+.+....
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999998876
No 328
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.79 E-value=0.054 Score=49.54 Aligned_cols=26 Identities=35% Similarity=0.531 Sum_probs=22.8
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-.+++|+|+.|+|||||++.+....
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998754
No 329
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=92.73 E-value=0.13 Score=53.09 Aligned_cols=46 Identities=24% Similarity=0.232 Sum_probs=34.6
Q ss_pred CcccccHHHHHHHHHHh---ccC---------CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCL---TEE---------PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L---~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++++|.++.++++.+.. ... -.+=+.|+|+.|+||||||+.+....
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 56899987777666554 221 12238899999999999999999876
No 330
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.73 E-value=0.069 Score=48.74 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=22.6
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
...|.|.|+.|+||||+|+.+....
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578999999999999999998876
No 331
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.62 E-value=0.23 Score=45.25 Aligned_cols=47 Identities=23% Similarity=0.304 Sum_probs=32.7
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCC----CCCeEEEEEeCCCCCHH
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPN----NFDFVIWEVVSRDLQLG 214 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~F~~~~wv~v~~~~~~~ 214 (532)
.-.+++|+|..|+|||||++.+.... .... .-...+|+.-...+...
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~-~~~~~~g~~~~~~i~~~~~~~~~~~ 74 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV-QLPPEEGGLNGSVIWIDTENTFRPE 74 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT-TSCGGGTCCSCEEEEEESSSCCCHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-hcccccCCCCCEEEEEECCCCCCHH
Confidence 45799999999999999999998754 1110 13467888755544433
No 332
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.56 E-value=0.071 Score=48.41 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.8
Q ss_pred EEEEecCCCCcHHHHHHHHHHhc
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.|.|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998776
No 333
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.54 E-value=0.079 Score=46.54 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=22.4
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
-.+|.|.|+.|+||||+++.+....
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4688999999999999999998865
No 334
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.54 E-value=0.15 Score=50.32 Aligned_cols=37 Identities=24% Similarity=0.369 Sum_probs=29.3
Q ss_pred HHHHHHHhc--cCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 156 LDRVWRCLT--EEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 156 ~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
...+.+.+. .++..+|+|+|.+|+||||++..+....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 445555554 3468899999999999999999987766
No 335
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.54 E-value=0.077 Score=48.10 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=23.7
Q ss_pred CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 166 EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 166 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
....+|.|.|+.|+||||+++.+....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 346789999999999999999998765
No 336
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.48 E-value=0.085 Score=48.02 Aligned_cols=23 Identities=35% Similarity=0.375 Sum_probs=20.9
Q ss_pred ceEEEEecCCCCcHHHHHHHHHH
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINN 190 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~ 190 (532)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999965
No 337
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=92.47 E-value=1.2 Score=44.46 Aligned_cols=60 Identities=15% Similarity=0.129 Sum_probs=32.4
Q ss_pred ccccccccceeeccccccccccCCCC-cCCCCccEEeecCCCCCCCCCCCCCCCCCceeEEecch
Q 009534 437 NLIPFARLERLSLGGLENLRSIYPRA-LPFPHLKELHVTLCPKLKKLPFDCTSGHERKLIIKGQE 500 (532)
Q Consensus 437 ~~~~~~~L~~L~l~~~~~L~~i~~~~-~~~p~L~~L~i~~C~~L~~lp~~~~~~l~~L~~~~~~~ 500 (532)
.+..+++|+.++|.+ +++.|.... ..|.+|+.+.+.. +++.++..-...+.+|+.+..+.
T Consensus 315 aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 315 AFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEG
T ss_pred hhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECC
Confidence 455566677776643 355665433 3466677666643 35555544333345555555543
No 338
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.45 E-value=0.077 Score=48.21 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.7
Q ss_pred EEEEecCCCCcHHHHHHHHHHhc
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.|.|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998766
No 339
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.42 E-value=0.075 Score=48.66 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=23.4
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-.+++|+|+.|+|||||.+.+....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 45789999999999999999998876
No 340
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.41 E-value=0.066 Score=48.96 Aligned_cols=25 Identities=24% Similarity=0.178 Sum_probs=22.7
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
...|.|.|+.|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999887
No 341
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.41 E-value=0.093 Score=48.60 Aligned_cols=35 Identities=23% Similarity=0.249 Sum_probs=27.0
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEE
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWE 205 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv 205 (532)
.-.+++|+|+.|.|||||.+.+..-. ....+.+++
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~----~p~~G~I~~ 64 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD----KPTEGEVYI 64 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC----CCCceEEEE
Confidence 45689999999999999999997655 233455555
No 342
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.33 E-value=0.081 Score=51.06 Aligned_cols=26 Identities=31% Similarity=0.534 Sum_probs=23.5
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+..+++|+|+.|+||||+++.+....
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45799999999999999999998776
No 343
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.31 E-value=0.11 Score=48.14 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=22.9
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
. .+++|+|+.|.|||||.+.+..-.
T Consensus 24 ~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 24 R-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp S-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred C-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 6 899999999999999999998765
No 344
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.26 E-value=0.092 Score=48.86 Aligned_cols=27 Identities=30% Similarity=0.369 Sum_probs=24.0
Q ss_pred CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 166 EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 166 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
....+|.|.|+.|+||||+|+.+.+..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998776
No 345
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.21 E-value=0.074 Score=47.44 Aligned_cols=23 Identities=43% Similarity=0.515 Sum_probs=21.3
Q ss_pred EEEEecCCCCcHHHHHHHHHHhc
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+++|+|..|+|||||++.+....
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 68999999999999999998876
No 346
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.21 E-value=1.1 Score=46.14 Aligned_cols=26 Identities=23% Similarity=0.452 Sum_probs=22.3
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+.++|.|+|.+|+||||++..+....
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999998776
No 347
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.19 E-value=0.079 Score=50.56 Aligned_cols=23 Identities=26% Similarity=0.629 Sum_probs=21.2
Q ss_pred CceEEEEecCCCCcHHHHHHHHH
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQIN 189 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~ 189 (532)
...+|+|.|+.|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999999997
No 348
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.17 E-value=0.11 Score=55.50 Aligned_cols=44 Identities=20% Similarity=0.299 Sum_probs=37.4
Q ss_pred CcccccHHHHHHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+.++|.+..++.+...+..+ ..+.|+|+.|+||||+|+.+....
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred ceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccC
Confidence 35799988888887777765 588999999999999999999876
No 349
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=92.13 E-value=0.14 Score=49.59 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhccC---CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 153 QSTLDRVWRCLTEE---PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 153 ~~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
...++.+.+++... ...-+-++|..|+|||+||+++++..
T Consensus 134 ~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 134 MEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp HHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 33444555566532 24678899999999999999999977
No 350
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.12 E-value=0.1 Score=47.99 Aligned_cols=35 Identities=23% Similarity=0.211 Sum_probs=27.0
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEE
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWE 205 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv 205 (532)
.-.+++|+|+.|.|||||.+.+..-. ....+.+++
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~----~p~~G~i~~ 63 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD----APTEGKVFL 63 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC----CCCceEEEE
Confidence 34689999999999999999997655 233455555
No 351
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.02 E-value=0.091 Score=47.20 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=21.7
Q ss_pred EEEEecCCCCcHHHHHHHHHHhc
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+|+|.|+.|+||||+|+.+....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998876
No 352
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.01 E-value=0.11 Score=49.41 Aligned_cols=35 Identities=26% Similarity=0.293 Sum_probs=27.1
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEE
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWE 205 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv 205 (532)
.-.+++|+|+.|.|||||.+.+..-. ....+.+++
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~----~p~~G~I~~ 67 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL----KPSSGRILF 67 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC----CCCCeEEEE
Confidence 34689999999999999999997755 334555555
No 353
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.01 E-value=0.11 Score=49.03 Aligned_cols=35 Identities=26% Similarity=0.267 Sum_probs=27.2
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEE
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWE 205 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv 205 (532)
.-.+++|+|+.|.|||||.+.+..-. ....+.+++
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~----~p~~G~i~~ 65 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE----KPSEGAIIV 65 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC----CCCCcEEEE
Confidence 45689999999999999999997755 233455555
No 354
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.94 E-value=0.086 Score=48.88 Aligned_cols=23 Identities=39% Similarity=0.310 Sum_probs=21.0
Q ss_pred CceEEEEecCCCCcHHHHHHHHH
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQIN 189 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~ 189 (532)
.-.+++|+|+.|+|||||++.+.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 45789999999999999999987
No 355
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.89 E-value=0.081 Score=49.50 Aligned_cols=25 Identities=36% Similarity=0.328 Sum_probs=22.8
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
-.+|.|+|+.|+||||+++.+....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998876
No 356
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=91.88 E-value=0.59 Score=46.06 Aligned_cols=45 Identities=24% Similarity=0.147 Sum_probs=34.7
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCHH
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQLG 214 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~~~ 214 (532)
.-+++-|.|.+|+||||||..+..... ..-..++|++....++..
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~---~~g~~vlyid~E~s~~~~ 106 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPI 106 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEESSCCCCHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEeCCCCccHH
Confidence 457899999999999999999887652 122468899987776643
No 357
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=91.85 E-value=0.18 Score=49.23 Aligned_cols=27 Identities=30% Similarity=0.475 Sum_probs=24.0
Q ss_pred CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 166 EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 166 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
....+++|+|+.|+||||+++.+....
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999998766
No 358
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.78 E-value=0.11 Score=50.86 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=22.4
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+|+|.|+.|+||||+|+.+....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999998876
No 359
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=91.77 E-value=0.39 Score=47.99 Aligned_cols=101 Identities=14% Similarity=0.211 Sum_probs=64.4
Q ss_pred cCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCC--c
Q 009534 323 SNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVT--W 400 (532)
Q Consensus 323 ~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~--~ 400 (532)
++|+.+.+.. .+..+....+.++++|+.+.+.. .++.++..... .+.+|+.+.|... ++.+. .
T Consensus 265 ~~L~~i~lp~--~~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~----------~c~~L~~i~lp~~-v~~I~~~a 329 (394)
T 4gt6_A 265 AYLASVKMPD--SVVSIGTGAFMNCPALQDIEFSS--RITELPESVFA----------GCISLKSIDIPEG-ITQILDDA 329 (394)
T ss_dssp SSCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTT----------TCTTCCEEECCTT-CCEECTTT
T ss_pred ccccEEeccc--ccceecCcccccccccccccCCC--cccccCceeec----------CCCCcCEEEeCCc-ccEehHhH
Confidence 4455555542 24444444556666677666642 45555544433 6789999998764 44443 2
Q ss_pred hhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeecccc
Q 009534 401 LILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGL 452 (532)
Q Consensus 401 l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 452 (532)
+..+.+|+.+.|-. +++.|.. ..+..+++|+.+++.+.
T Consensus 330 F~~C~~L~~i~ip~--sv~~I~~------------~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 330 FAGCEQLERIAIPS--SVTKIPE------------SAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TTTCTTCCEEEECT--TCCBCCG------------GGGTTCTTCCEEEESSC
T ss_pred hhCCCCCCEEEECc--ccCEEhH------------hHhhCCCCCCEEEECCc
Confidence 67789999999843 4666654 36778899999988763
No 360
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.76 E-value=0.11 Score=47.38 Aligned_cols=26 Identities=38% Similarity=0.589 Sum_probs=22.5
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-.+++|+|+.|.|||||.+.+..-.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999997755
No 361
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.75 E-value=0.12 Score=47.94 Aligned_cols=26 Identities=42% Similarity=0.492 Sum_probs=22.7
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-.+++|+|..|.|||||.+.+..-.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999997755
No 362
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=91.74 E-value=0.11 Score=56.90 Aligned_cols=46 Identities=24% Similarity=0.365 Sum_probs=35.6
Q ss_pred CcccccHHHHHHHHHHhc----c---------CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLT----E---------EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+++.|.++.+++|.+.+. . ..++=|-++|+.|+|||+||+++.+..
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el 262 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 346788877777776642 2 135668899999999999999999877
No 363
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.73 E-value=0.11 Score=50.27 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=23.5
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
...+++|.|..|+|||||++.+....
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999998865
No 364
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.72 E-value=0.064 Score=49.43 Aligned_cols=25 Identities=28% Similarity=0.240 Sum_probs=16.6
Q ss_pred ceEEEEecCCCCcHHHHHHHHH-Hhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQIN-NSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~-~~~ 192 (532)
-.+++|+|+.|+||||+++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999999999999999998 544
No 365
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=91.71 E-value=0.2 Score=44.85 Aligned_cols=83 Identities=14% Similarity=0.113 Sum_probs=45.0
Q ss_pred EEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCC---CCCCCHHHHHHHHHHH
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQLGKIQESIAKKIGLCNES---WDSKSFDEKAQEIFKT 246 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~---~~~~~~~~~~~~l~~~ 246 (532)
.|+|-|..|+||||.++.+.+.. +. .-..+....-.......+..+.++..-...... ....+..+....+...
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L-~~--~g~~v~~treP~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~I~~~ 78 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYL-EK--RGKKVILKREPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQY 78 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-HH--TTCCEEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-HH--CCCcEEEEECCCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999888 32 222344444333334444444444322110000 0001122344556677
Q ss_pred hcCCcEEEe
Q 009534 247 MRNTKFLIS 255 (532)
Q Consensus 247 L~~kr~LlV 255 (532)
|...+.+|.
T Consensus 79 L~~g~~Vi~ 87 (197)
T 3hjn_A 79 LSEGYAVLL 87 (197)
T ss_dssp HTTTCEEEE
T ss_pred HHCCCeEEe
Confidence 777776665
No 366
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.70 E-value=0.11 Score=50.05 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=23.4
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
...+++|+|..|+||||+++.+....
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999998876
No 367
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.68 E-value=0.13 Score=47.46 Aligned_cols=26 Identities=31% Similarity=0.449 Sum_probs=22.9
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-.+++|+|+.|.|||||.+.+..-.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998765
No 368
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.67 E-value=0.13 Score=48.09 Aligned_cols=35 Identities=23% Similarity=0.297 Sum_probs=27.3
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEE
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWE 205 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv 205 (532)
.-.+++|+|..|.|||||.+.+..-. ....+.+++
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~p~~G~I~i 68 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY----IPENGQVLI 68 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC----CCCCcEEEE
Confidence 34689999999999999999997765 233566655
No 369
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.67 E-value=0.11 Score=48.06 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=22.9
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..+|+|.|+.|+||||+|+.+....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998876
No 370
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.66 E-value=0.11 Score=45.50 Aligned_cols=25 Identities=28% Similarity=0.527 Sum_probs=22.8
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..++.|.|..|+||||+++.+....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999998875
No 371
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.63 E-value=0.13 Score=48.56 Aligned_cols=35 Identities=26% Similarity=0.139 Sum_probs=27.1
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEE
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWE 205 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv 205 (532)
.-.+++|+|+.|.|||||.+.+..-. ....+.+++
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~----~p~~G~I~~ 83 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE----DFDEGEIII 83 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC----CCCCcEEEE
Confidence 45789999999999999999997755 233455555
No 372
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.61 E-value=0.13 Score=48.68 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=22.9
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-.+++|+|..|.|||||++.+..-.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45789999999999999999997755
No 373
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.57 E-value=0.11 Score=47.63 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=21.1
Q ss_pred EEEEecCCCCcHHHHHHHHHHhc
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.|.|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998876
No 374
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.55 E-value=0.13 Score=48.29 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=26.9
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEE
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWE 205 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv 205 (532)
.-.+++|+|+.|.|||||.+.+..-. ....+.+++
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~----~p~~G~i~~ 66 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL----KADEGRVYF 66 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEE
Confidence 34689999999999999999997765 233455555
No 375
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.54 E-value=0.069 Score=46.78 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=21.9
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+++|+|..|.|||||++.+..-.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999997776
No 376
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.50 E-value=0.13 Score=48.20 Aligned_cols=35 Identities=31% Similarity=0.321 Sum_probs=27.0
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEE
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWE 205 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv 205 (532)
.-.+++|+|+.|.|||||.+.+..-. ....+.+++
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~----~p~~G~I~~ 74 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI----KPSSGIVTV 74 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC----CCCceEEEE
Confidence 45689999999999999999997765 233455555
No 377
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=91.49 E-value=0.16 Score=45.70 Aligned_cols=37 Identities=14% Similarity=0.091 Sum_probs=27.0
Q ss_pred HHHHHHHhcc-CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 156 LDRVWRCLTE-EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 156 ~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+..+..++.. ++.+.+-|+|++|+||||+|.++.+..
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444444433 133468999999999999999998876
No 378
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.49 E-value=0.1 Score=47.45 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=21.8
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..|.|.|+.|+||||+|+.+....
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999998876
No 379
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.46 E-value=0.13 Score=48.62 Aligned_cols=35 Identities=23% Similarity=0.325 Sum_probs=27.3
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEE
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWE 205 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv 205 (532)
.-.+++|+|..|.|||||.+.+..-. ....+.+++
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~----~p~~G~I~~ 78 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY----QPTGGKVLL 78 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC----CCCCCEEEE
Confidence 45689999999999999999997765 233455555
No 380
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.45 E-value=0.11 Score=47.22 Aligned_cols=23 Identities=26% Similarity=0.219 Sum_probs=20.9
Q ss_pred EEEEecCCCCcHHHHHHHHHHhc
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.|.|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 381
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=91.44 E-value=0.2 Score=54.97 Aligned_cols=60 Identities=25% Similarity=0.375 Sum_probs=43.2
Q ss_pred CcccccHHHHHHHHHHhccC---------CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCC
Q 009534 147 PTVVGLQSTLDRVWRCLTEE---------PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSR 209 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~ 209 (532)
..++|.+..++.+.+.+... ....+-++|+.|+|||++|+.+.+... ..-...+.+.++.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~---~~~~~~i~i~~s~ 559 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIF---GDEESMIRIDMSE 559 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHH---SCTTCEEEEEGGG
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc---CCCcceEEEechh
Confidence 45799999998888887531 123688999999999999999998863 2223344555443
No 382
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=91.43 E-value=0.4 Score=46.57 Aligned_cols=58 Identities=22% Similarity=0.332 Sum_probs=41.5
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCC----CCCeEEEEEeCCCCCHHHHHHHHHHHhcC
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPN----NFDFVIWEVVSRDLQLGKIQESIAKKIGL 226 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~F~~~~wv~v~~~~~~~~l~~~i~~~l~~ 226 (532)
.-.++.|+|..|+||||+|..+.... .... .-..++|++....++...+.+. +..++.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~-~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~-~~~~g~ 167 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNV-QLPPEKGGLSGKAVYIDTEGTFRWERIENM-AKALGL 167 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT-TSCGGGTCCSCEEEEEESSSCCCHHHHHHH-HHHTTC
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHH-hcccccCCCCCeEEEEECCCCCCHHHHHHH-HHHhCC
Confidence 45689999999999999999988765 1111 0247899998887777766543 445543
No 383
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.43 E-value=0.12 Score=47.64 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=22.7
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
...|.|.|+.|+||||+|+.+....
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998887
No 384
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.41 E-value=0.13 Score=48.17 Aligned_cols=26 Identities=35% Similarity=0.422 Sum_probs=23.2
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
...++.+.|.||+||||++..+....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 46788899999999999999998776
No 385
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.40 E-value=0.13 Score=47.72 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=22.9
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
...|.|.|..|+||||+++.+....
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999886
No 386
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=91.40 E-value=0.13 Score=53.99 Aligned_cols=45 Identities=33% Similarity=0.402 Sum_probs=35.5
Q ss_pred cccccHHHHHHHHHHhcc------CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 148 TVVGLQSTLDRVWRCLTE------EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 148 ~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+++|.++-++.+.+.+.- .....+.++|+.|+||||+|+.+....
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 468888777777655421 245689999999999999999999876
No 387
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.39 E-value=0.96 Score=45.60 Aligned_cols=84 Identities=13% Similarity=0.144 Sum_probs=46.4
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCHHHH--HHHHHHHhcCCCCCC-CCCCHHHHHHHHH
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQLGKI--QESIAKKIGLCNESW-DSKSFDEKAQEIF 244 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~~~~l--~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 244 (532)
..++.|+|.+|+||||++..+.... ... . ..+..+.. ..+..... +.......+.+.-.. ...+..+......
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l-~~~-g-~~Vllvd~-D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l 173 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYY-KGK-G-RRPLLVAA-DTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH-HTT-T-CCEEEEEC-CSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-HHc-C-CeEEEeec-cccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHH
Confidence 5789999999999999999998877 322 1 23444543 33333222 333444444321100 1234444433333
Q ss_pred HHh--cCCcEEEe
Q 009534 245 KTM--RNTKFLIS 255 (532)
Q Consensus 245 ~~L--~~kr~LlV 255 (532)
+.+ .+-.++||
T Consensus 174 ~~~~~~~~DvVII 186 (425)
T 2ffh_A 174 EKARLEARDLILV 186 (425)
T ss_dssp HHHHHTTCSEEEE
T ss_pred HHHHHCCCCEEEE
Confidence 444 45567888
No 388
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=91.34 E-value=0.4 Score=47.87 Aligned_cols=120 Identities=18% Similarity=0.133 Sum_probs=74.3
Q ss_pred cCCCeEEEecCCCCCccccccccccccccceeeccccCcceeeecccCCccccccccCCCCCccEEEEeCCccccCC--c
Q 009534 323 SNTPSLSLTNCRSLSSLSVLTLASLRHLEALDMRYCKDLEEMEIDYAGGEVKRIRETHGFFSLHKVSIWGSKLRHVT--W 400 (532)
Q Consensus 323 ~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~L~~l~--~ 400 (532)
.+|+.+.+.. .+..+....+..+..|+.+..... .++.... ..+.+|+.+.+.+. ++.+. .
T Consensus 253 ~~l~~~~~~~--~~~~i~~~~F~~~~~l~~~~~~~~----~i~~~~F----------~~~~~L~~i~l~~~-i~~I~~~a 315 (394)
T 4fs7_A 253 TDLESISIQN--NKLRIGGSLFYNCSGLKKVIYGSV----IVPEKTF----------YGCSSLTEVKLLDS-VKFIGEEA 315 (394)
T ss_dssp SSCCEEEECC--TTCEECSCTTTTCTTCCEEEECSS----EECTTTT----------TTCTTCCEEEECTT-CCEECTTT
T ss_pred ccceeEEcCC--CcceeeccccccccccceeccCce----eeccccc----------cccccccccccccc-cceechhh
Confidence 5577776654 244555555556666666655431 1222222 25678888888664 44443 2
Q ss_pred hhcCCCcceeeeccccccccccccccccCcCcccCcccccccccceeeccccccccccCCCC-cCCCCccEEeecC
Q 009534 401 LILAPNLKLIQMYDCRCLEEIISLEKLGEVPSEEMQNLIPFARLERLSLGGLENLRSIYPRA-LPFPHLKELHVTL 475 (532)
Q Consensus 401 l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~i~~~~-~~~p~L~~L~i~~ 475 (532)
+..+.+|+.+.|. ..++.|.. ..+..+++|+.+.+.. +++.+.... ..|++|+.+.+..
T Consensus 316 F~~c~~L~~i~lp--~~v~~I~~------------~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 316 FESCTSLVSIDLP--YLVEEIGK------------RSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TTTCTTCCEECCC--TTCCEECT------------TTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEG
T ss_pred hcCCCCCCEEEeC--CcccEEhH------------HhccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECC
Confidence 5678888888884 24666644 3677788888888864 477776644 3578888888753
No 389
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.33 E-value=0.2 Score=51.45 Aligned_cols=42 Identities=19% Similarity=0.309 Sum_probs=29.8
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCC
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQ 212 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~ 212 (532)
...+++|+|..|+||||+++.+.... .. -.+.+++.-...+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll-~~---~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF-EQ---QGKSVMLAAGDTFR 333 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH-HH---TTCCEEEECCCTTC
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh-hh---cCCeEEEecCcccc
Confidence 46799999999999999999998766 21 23445554334443
No 390
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=91.31 E-value=0.65 Score=44.47 Aligned_cols=85 Identities=15% Similarity=0.068 Sum_probs=47.1
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCC-CCCHHHHHHHHHHHhcCCCCC-CCCCCHHHHHHHHHH
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSR-DLQLGKIQESIAKKIGLCNES-WDSKSFDEKAQEIFK 245 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~-~~~~~~l~~~i~~~l~~~~~~-~~~~~~~~~~~~l~~ 245 (532)
..++.++|.+|+||||++..+.... .. .=..+.++.... ......-++......+.+.-. ....+..+......+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~-~~--~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~ 174 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY-KK--KGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVE 174 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH-HH--TTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-HH--CCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHH
Confidence 5789999999999999999988776 21 112455565432 222223233344444432110 022344555444444
Q ss_pred Hh--cCCcEEEe
Q 009534 246 TM--RNTKFLIS 255 (532)
Q Consensus 246 ~L--~~kr~LlV 255 (532)
.+ .+-.|+||
T Consensus 175 ~~~~~~~D~ViI 186 (297)
T 1j8m_F 175 KFLSEKMEIIIV 186 (297)
T ss_dssp HHHHTTCSEEEE
T ss_pred HHHhCCCCEEEE
Confidence 44 45567777
No 391
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.27 E-value=0.082 Score=47.94 Aligned_cols=24 Identities=33% Similarity=0.180 Sum_probs=21.2
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHh
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNS 191 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~ 191 (532)
-.+++|+|..|.|||||++.+..-
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999998754
No 392
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.23 E-value=0.12 Score=45.93 Aligned_cols=25 Identities=36% Similarity=0.448 Sum_probs=22.2
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
...++|+|..|+|||||.+.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4678999999999999999998765
No 393
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.23 E-value=0.14 Score=47.72 Aligned_cols=26 Identities=27% Similarity=0.589 Sum_probs=22.9
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-.+++|+|..|.|||||.+.+..-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45789999999999999999997654
No 394
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=91.22 E-value=0.27 Score=44.66 Aligned_cols=52 Identities=17% Similarity=0.210 Sum_probs=32.7
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQLGKIQESIAK 222 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~ 222 (532)
..|.|.|..|+||||+++.+.... .. ..+..+....-.....+.+..+.++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l-~~-~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL-EQ-LGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH-HH-TTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH-HH-cCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 578999999999999999999887 32 33433333332222233444444443
No 395
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.22 E-value=0.15 Score=48.20 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=22.7
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-.+++|+|..|.|||||.+.+..-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45689999999999999999997754
No 396
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.18 E-value=0.13 Score=49.58 Aligned_cols=44 Identities=20% Similarity=0.346 Sum_probs=31.5
Q ss_pred CCceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCC
Q 009534 166 EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQ 212 (532)
Q Consensus 166 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~ 212 (532)
...++|+|+|-||+||||+|..+..... .. . ..++-|+.....+
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La-~~-G-~~VlliD~D~~~~ 82 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFS-IL-G-KRVLQIGCDPKHD 82 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH-HT-T-CCEEEEEESSSCC
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHH-HC-C-CeEEEEeCCCCCC
Confidence 3678999999999999999999887773 11 1 2466666654333
No 397
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.13 E-value=0.12 Score=48.32 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=22.3
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHh
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNS 191 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~ 191 (532)
.-.+++|+|..|.|||||.+.+..-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999874
No 398
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=91.09 E-value=0.74 Score=45.49 Aligned_cols=74 Identities=18% Similarity=0.126 Sum_probs=47.5
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCC---CCCCCHHHHHHHH
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQLGKIQESIAKKIGLCNES---WDSKSFDEKAQEI 243 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~~~---~~~~~~~~~~~~l 243 (532)
.-.++-|.|.+|+||||+|..+..... ..-..++|++....++.. .+..++.+.+. ....+.++....+
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~---~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l 144 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQ---KAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIM 144 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH---HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHH---HCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHH
Confidence 356888899999999999999877652 122478999988766654 24445443211 1234556666666
Q ss_pred HHHhc
Q 009534 244 FKTMR 248 (532)
Q Consensus 244 ~~~L~ 248 (532)
....+
T Consensus 145 ~~l~~ 149 (366)
T 1xp8_A 145 ELLVR 149 (366)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 65554
No 399
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.09 E-value=0.12 Score=47.99 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=22.7
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-.+++|+|..|.|||||.+.+..-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35689999999999999999997654
No 400
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=91.08 E-value=0.28 Score=45.27 Aligned_cols=37 Identities=19% Similarity=0.398 Sum_probs=28.1
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEE
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEV 206 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~ 206 (532)
...|.|.|+.|+||||+++.+.... . ..++..+....
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l-~-~~~~~~~~~~r 63 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL-Q-QNGIDHITRTR 63 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH-H-HTTCCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-H-hcCCCeeeeec
Confidence 4689999999999999999999887 3 23455344443
No 401
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=91.06 E-value=0.15 Score=43.34 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=21.1
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-|.++|..|+|||||...+.+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999998764
No 402
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.04 E-value=0.23 Score=45.66 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=23.9
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-..|.|.|+.|+||||+++.+....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999999988
No 403
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.03 E-value=0.16 Score=48.40 Aligned_cols=35 Identities=31% Similarity=0.247 Sum_probs=26.8
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEE
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWE 205 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv 205 (532)
.-.+++|+|..|.|||||.+.+..-. ....+.+++
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~----~p~~G~I~~ 80 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE----PATSGTVNL 80 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC----CCCCeEEEE
Confidence 45689999999999999999997765 223455554
No 404
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=90.98 E-value=0.15 Score=49.29 Aligned_cols=26 Identities=31% Similarity=0.510 Sum_probs=23.5
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
...++.|+|.+|+||||++..+....
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 46799999999999999999998776
No 405
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.93 E-value=0.13 Score=48.69 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=22.5
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHh
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNS 191 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~ 191 (532)
.-.+++|+|..|.|||||.+.+..-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999885
No 406
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.92 E-value=0.13 Score=45.89 Aligned_cols=25 Identities=36% Similarity=0.448 Sum_probs=21.8
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
...++|+|..|+|||||.+.+....
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 3568999999999999999998764
No 407
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=90.88 E-value=0.15 Score=49.49 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=22.3
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
++|.|+|+.|+||||+|+.+....
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999998876
No 408
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=90.88 E-value=0.56 Score=45.95 Aligned_cols=57 Identities=16% Similarity=0.237 Sum_probs=41.0
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCC----CCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPN----NFDFVIWEVVSRDLQLGKIQESIAKKIG 225 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~F~~~~wv~v~~~~~~~~l~~~i~~~l~ 225 (532)
.-.++.|.|..|+||||+|..+.... .... .-..++|++....++...+... +..++
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~-~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~-~~~~g 181 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTA-QLPGAGGYPGGKIIFIDTENTFRPDRLRDI-ADRFN 181 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHT-TSCBTTTBCCCEEEEEESSSCCCHHHHHHH-HHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-hcccccCCCCCeEEEEECCCCCCHHHHHHH-HHHcC
Confidence 45789999999999999999988764 1111 2257899998887777765543 44444
No 409
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.81 E-value=0.14 Score=44.09 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.7
Q ss_pred eEEEEecCCCCcHHHHHHHHHHh
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNS 191 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~ 191 (532)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999764
No 410
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=90.80 E-value=0.17 Score=48.76 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=22.5
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.++|.|.|+.|+||||||..+....
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4689999999999999999998765
No 411
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=90.77 E-value=0.15 Score=50.25 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=23.5
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
...+++|+|..|+||||+++.+....
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 35799999999999999999998876
No 412
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=90.67 E-value=0.15 Score=46.04 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=21.2
Q ss_pred EEEEecCCCCcHHHHHHHHHHhc
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+|.|.|++|+||+|.|+.+..+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57789999999999999999887
No 413
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=90.64 E-value=0.41 Score=43.44 Aligned_cols=25 Identities=28% Similarity=0.256 Sum_probs=22.9
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
-..|.|.|+.|+||||+++.+.+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999887
No 414
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=90.64 E-value=0.16 Score=49.30 Aligned_cols=26 Identities=38% Similarity=0.616 Sum_probs=23.4
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
...+++|+|.+|+||||++..+....
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999988776
No 415
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=90.57 E-value=9.6 Score=37.19 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=22.6
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+...++++|..|+|||||...+....
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46789999999999999999987653
No 416
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=90.53 E-value=0.14 Score=43.53 Aligned_cols=23 Identities=35% Similarity=0.548 Sum_probs=20.4
Q ss_pred EEEEecCCCCcHHHHHHHHHHhc
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
-|.++|.+|+|||||...+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998764
No 417
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.52 E-value=0.17 Score=49.33 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=23.2
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..++|.|+|+.|+||||||..+....
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 34689999999999999999998766
No 418
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=90.48 E-value=0.51 Score=42.52 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=22.2
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+-|+|-|..|+||||+++.+.+..
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH
Confidence 468899999999999999999988
No 419
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=90.43 E-value=0.077 Score=50.87 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=20.0
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+..+|+|.|..|+||||+|+.+....
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998764
No 420
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=90.36 E-value=0.18 Score=44.31 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=21.2
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHh
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNS 191 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~ 191 (532)
...|+++|..|+|||||.+.+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999874
No 421
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.36 E-value=0.17 Score=48.60 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=21.5
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+|.|.|+.|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC
Confidence 578999999999999999998753
No 422
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=90.32 E-value=0.56 Score=45.36 Aligned_cols=53 Identities=11% Similarity=0.086 Sum_probs=38.8
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQLGKIQESIAKKI 224 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l 224 (532)
.-.++.|.|.+|+||||+|..+..... .++ ..++|++.. .+..++...+....
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a-~~g--~~vl~~slE--~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMS-DND--DVVNLHSLE--MGKKENIKRLIVTA 119 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHH-TTT--CEEEEEESS--SCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH-HcC--CeEEEEECC--CCHHHHHHHHHHHH
Confidence 356888999999999999999987663 222 678888755 46667777766543
No 423
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.32 E-value=0.15 Score=48.00 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=22.9
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-.+++|+|..|.|||||.+.+..-.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 45689999999999999999998765
No 424
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=90.31 E-value=0.11 Score=47.89 Aligned_cols=25 Identities=32% Similarity=0.243 Sum_probs=22.0
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHh
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNS 191 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~ 191 (532)
.-.+|+|.|..|+||||+++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4579999999999999999988664
No 425
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.29 E-value=0.15 Score=47.62 Aligned_cols=26 Identities=35% Similarity=0.484 Sum_probs=22.7
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-.+++|+|..|.|||||.+.+..-.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34689999999999999999998765
No 426
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=90.27 E-value=0.34 Score=49.64 Aligned_cols=40 Identities=25% Similarity=0.367 Sum_probs=30.0
Q ss_pred cHHHHHHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 152 LQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 152 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..+.++.+.+.+..++ +.+.|.|.+|+||||++..+....
T Consensus 30 Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 30 QKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp HHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3444555555555543 389999999999999999998877
No 427
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=90.27 E-value=0.16 Score=46.37 Aligned_cols=48 Identities=21% Similarity=0.153 Sum_probs=31.6
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCHHHHHHH
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQLGKIQES 219 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~ 219 (532)
.-.++.|.|..|+|||||++.+..... ..=..+.|+.... ....+...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~---~~~~~v~~~~~~~--~~~~~~~~ 69 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGL---RDGDPCIYVTTEE--SRDSIIRQ 69 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHH---HHTCCEEEEESSS--CHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH---HCCCeEEEEEccc--CHHHHHHH
Confidence 346899999999999999999986652 1112456665433 34444443
No 428
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.22 E-value=0.15 Score=44.88 Aligned_cols=22 Identities=41% Similarity=0.534 Sum_probs=19.6
Q ss_pred EEEEecCCCCcHHHHHHHHHHh
Q 009534 170 IVGLYGMGGVGKTTLLTQINNS 191 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~ 191 (532)
-|.|+|.+|+|||||.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998763
No 429
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=90.22 E-value=0.16 Score=43.38 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=21.5
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.--|.|+|.+|+|||||...+.+..
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 3457899999999999999998764
No 430
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=90.18 E-value=0.18 Score=46.47 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=23.4
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
...+|+|.|+.|+||||+++.+....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998876
No 431
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=90.17 E-value=0.16 Score=44.65 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=21.1
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
--|.++|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468899999999999999998764
No 432
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=90.17 E-value=0.19 Score=48.24 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=22.8
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..+++|+|.+|+||||++..+....
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999998776
No 433
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=90.02 E-value=0.16 Score=47.57 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=22.7
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-.+++|+|..|.|||||.+.+..-.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998765
No 434
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=90.01 E-value=0.58 Score=45.31 Aligned_cols=58 Identities=17% Similarity=0.313 Sum_probs=41.2
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCC------------CCC--CeEEEEEeCCCCCHHHHHHHHHHHhcC
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTP------------NNF--DFVIWEVVSRDLQLGKIQESIAKKIGL 226 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------~~F--~~~~wv~v~~~~~~~~l~~~i~~~l~~ 226 (532)
.-.++-|.|..|+|||++|..+.... ... +.. ..++|++....++...+.+. +..++.
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~-~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~-~~~~g~ 168 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNL-QNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM-AEHAGI 168 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHT-TCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH-HHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-hccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH-HHHcCC
Confidence 45789999999999999999987653 111 111 47899998888777776644 444543
No 435
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=89.99 E-value=0.29 Score=47.15 Aligned_cols=41 Identities=10% Similarity=0.046 Sum_probs=32.5
Q ss_pred ccHHHHHHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHh
Q 009534 151 GLQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNS 191 (532)
Q Consensus 151 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 191 (532)
|-++.++.+.+.+..++.+..-++|+.|+||||+|+.+.+.
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEY 41 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 34556777788887777788999999999999999999775
No 436
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=89.93 E-value=0.69 Score=46.33 Aligned_cols=59 Identities=19% Similarity=0.214 Sum_probs=38.7
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCC---CCCCCeEEEEEeCCCCCHHHHHHHHHHHhcC
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHT---PNNFDFVIWEVVSRDLQLGKIQESIAKKIGL 226 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~ 226 (532)
.-.++.|+|..|+|||||+..+.-..... ...-..++|++....++...+. .+++.++.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~gl 238 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFGL 238 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcCC
Confidence 45799999999999999999775333110 1123568899877666655443 35555543
No 437
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=89.92 E-value=0.49 Score=46.55 Aligned_cols=48 Identities=23% Similarity=0.338 Sum_probs=33.5
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCC----CeEEEEEeCCCCCHHH
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNF----DFVIWEVVSRDLQLGK 215 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F----~~~~wv~v~~~~~~~~ 215 (532)
.-.++.|+|..|+|||||+..+.... ...... ..++|++....+....
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~-~~~~~~Gg~~G~vi~i~~e~~~~~~~ 181 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV-QLPPEEGGLNGSVIWIDTENTFRPER 181 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT-TSCGGGTSCSCEEEEEESSSCCCHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh-ccchhcCCCCCeEEEEeCCCCCCHHH
Confidence 56899999999999999999998765 111111 2458998765544333
No 438
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=89.87 E-value=0.2 Score=47.14 Aligned_cols=27 Identities=22% Similarity=0.436 Sum_probs=23.3
Q ss_pred CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 166 EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 166 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..-.+++|+|+.|.||||+.+.+....
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 456799999999999999999987654
No 439
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=89.87 E-value=0.19 Score=48.48 Aligned_cols=26 Identities=31% Similarity=0.517 Sum_probs=22.8
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-.+++|+|..|.|||||++.+..-.
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 45789999999999999999997654
No 440
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=89.87 E-value=0.17 Score=47.82 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=21.0
Q ss_pred EEEEecCCCCcHHHHHHHHHHhc
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.++|+|..|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998865
No 441
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=89.83 E-value=0.18 Score=48.46 Aligned_cols=27 Identities=15% Similarity=0.216 Sum_probs=23.5
Q ss_pred CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 166 EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 166 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..-.+++|+|+.|.|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 356789999999999999999998754
No 442
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=89.82 E-value=0.2 Score=44.89 Aligned_cols=38 Identities=21% Similarity=0.128 Sum_probs=21.9
Q ss_pred HHHHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 155 TLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 155 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..+.+.+.....+.--|.|+|..|+|||||...+.+..
T Consensus 17 ~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 17 RGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp -------------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred chhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 33344444444455678999999999999999988654
No 443
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=89.77 E-value=0.33 Score=53.24 Aligned_cols=46 Identities=26% Similarity=0.427 Sum_probs=37.2
Q ss_pred CcccccHHHHHHHHHHhccC---------CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEE---------PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..++|.++.++.+.+.+... ....+-++|+.|+|||++|+.+.+..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 45789999888888876421 23468899999999999999999876
No 444
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=89.77 E-value=0.19 Score=42.85 Aligned_cols=24 Identities=38% Similarity=0.403 Sum_probs=21.0
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-|.++|..|+|||||...+.+..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 458899999999999999998764
No 445
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=89.76 E-value=0.22 Score=47.84 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=22.9
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.++|.|.|+.|+||||||..+....
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 5789999999999999999998876
No 446
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.73 E-value=0.32 Score=42.65 Aligned_cols=35 Identities=34% Similarity=0.514 Sum_probs=26.9
Q ss_pred HHHHHHhccCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 157 DRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 157 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..+.+ +...+..-|.|+|..|+|||||...+.+..
T Consensus 6 ~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~~ 40 (187)
T 1zj6_A 6 TRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMNE 40 (187)
T ss_dssp HHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred HHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcCC
Confidence 34555 444566788999999999999999998543
No 447
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.65 E-value=0.34 Score=48.18 Aligned_cols=27 Identities=22% Similarity=0.039 Sum_probs=23.9
Q ss_pred CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 166 EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 166 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
....+++|+|+.|+|||||++.+....
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 356799999999999999999999765
No 448
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=89.55 E-value=0.46 Score=47.91 Aligned_cols=29 Identities=31% Similarity=0.395 Sum_probs=25.2
Q ss_pred ccCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 164 TEEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 164 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
....-.+++|+|+.|.||||+.+.+....
T Consensus 163 ~~~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 163 IKRPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp HTSSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHhcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 34556799999999999999999998876
No 449
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=89.55 E-value=0.22 Score=48.05 Aligned_cols=24 Identities=33% Similarity=0.570 Sum_probs=21.0
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHh
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNS 191 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~ 191 (532)
-+++-|+|++|+|||+||.++...
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 456789999999999999999775
No 450
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=89.49 E-value=0.23 Score=43.81 Aligned_cols=26 Identities=27% Similarity=0.232 Sum_probs=22.6
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
....|.|+|..|+|||||...+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678999999999999999998764
No 451
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=89.48 E-value=0.17 Score=43.60 Aligned_cols=25 Identities=36% Similarity=0.356 Sum_probs=20.8
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.--|.|+|..|+|||||.+.+....
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEEECCCCccHHHHHHHHhcCC
Confidence 3468999999999999999987654
No 452
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=89.48 E-value=0.13 Score=48.38 Aligned_cols=26 Identities=15% Similarity=0.267 Sum_probs=23.2
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+...|.|.|..|+||||+|+.+.+..
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 46799999999999999999887765
No 453
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=89.46 E-value=0.2 Score=42.69 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=20.4
Q ss_pred EEEEecCCCCcHHHHHHHHHHhc
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
-|.|+|..|+|||||.+.+.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57899999999999999998754
No 454
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=89.42 E-value=0.36 Score=49.91 Aligned_cols=44 Identities=9% Similarity=-0.031 Sum_probs=32.5
Q ss_pred ccccHHHHHHHHHHh--ccCCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 149 VVGLQSTLDRVWRCL--TEEPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 149 ~vGr~~~~~~l~~~L--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
...+.+-.+.+.+.. ...+..+|.+.|+.|+||||+|+.+....
T Consensus 374 ~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L 419 (511)
T 1g8f_A 374 WFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTF 419 (511)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred cccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHH
Confidence 345554444555544 22356789999999999999999999998
No 455
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.40 E-value=0.19 Score=50.88 Aligned_cols=27 Identities=26% Similarity=0.286 Sum_probs=23.8
Q ss_pred CCceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 166 EPVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 166 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
....+|.|+|+.|+||||+|+.+..+.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 357899999999999999999998765
No 456
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.29 E-value=0.21 Score=42.64 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.3
Q ss_pred EEEEecCCCCcHHHHHHHHHHhc
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
-|.++|..|+|||||...+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999988765
No 457
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=89.28 E-value=0.22 Score=43.91 Aligned_cols=25 Identities=36% Similarity=0.274 Sum_probs=20.8
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.--|.|+|..|+|||||.+.+.+..
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhc
Confidence 3458899999999999998877654
No 458
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=89.25 E-value=0.21 Score=42.76 Aligned_cols=24 Identities=38% Similarity=0.351 Sum_probs=21.0
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
--|.|+|..|+|||||...+.+..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 458899999999999999998764
No 459
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=89.25 E-value=0.22 Score=42.68 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=21.1
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
--|.|+|..|+|||||.+.+.+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 358899999999999999998765
No 460
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=89.21 E-value=0.23 Score=42.29 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=19.7
Q ss_pred EEEecCCCCcHHHHHHHHHHhc
Q 009534 171 VGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 171 i~I~G~gGiGKTtLa~~v~~~~ 192 (532)
|.++|..|+|||||...+....
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999997654
No 461
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=89.20 E-value=0.87 Score=43.82 Aligned_cols=54 Identities=11% Similarity=0.106 Sum_probs=38.5
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQLGKIQESIAKKIGLCN 228 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l~~~~ 228 (532)
.++-|.|..|+|||||+..+..... .+..=..++||+....++.. -+++++...
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~-~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~ 82 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYM-RQYPDAVCLFYDSEFGITPA-----YLRSMGVDP 82 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHH-HHCTTCEEEEEESSCCCCHH-----HHHHTTCCG
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH-hcCCCceEEEEeccchhhHH-----HHHHhCCCH
Confidence 4789999999999999998877662 11112478999887777754 266676643
No 462
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=89.14 E-value=0.22 Score=42.33 Aligned_cols=24 Identities=38% Similarity=0.451 Sum_probs=20.7
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
--|.|+|..|+|||||...+.+..
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 358899999999999999987654
No 463
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=89.14 E-value=0.2 Score=47.60 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=22.8
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-.++.|+|..|+|||||+..+....
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999988755
No 464
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=89.11 E-value=0.21 Score=43.80 Aligned_cols=25 Identities=24% Similarity=0.242 Sum_probs=21.4
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..-|.|+|.+|+|||||.+.+.+..
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3457899999999999999998764
No 465
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=89.11 E-value=0.3 Score=42.70 Aligned_cols=26 Identities=35% Similarity=0.473 Sum_probs=22.0
Q ss_pred CCceEEEEecCCCCcHHHHHHHHHHh
Q 009534 166 EPVGIVGLYGMGGVGKTTLLTQINNS 191 (532)
Q Consensus 166 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 191 (532)
.....|.|+|.+|+|||||...+.+.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 35667899999999999999998654
No 466
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=89.04 E-value=0.21 Score=42.73 Aligned_cols=24 Identities=33% Similarity=0.605 Sum_probs=20.7
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
--|.++|..|+|||||...+.+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGT 27 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 357899999999999999998753
No 467
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=89.04 E-value=0.25 Score=42.73 Aligned_cols=26 Identities=38% Similarity=0.396 Sum_probs=22.4
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+...|.|+|..|+|||||...+.+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45678999999999999999987654
No 468
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.01 E-value=0.23 Score=43.31 Aligned_cols=33 Identities=24% Similarity=0.333 Sum_probs=24.7
Q ss_pred HHHHHhcc-CCceEEEEecCCCCcHHHHHHHHHH
Q 009534 158 RVWRCLTE-EPVGIVGLYGMGGVGKTTLLTQINN 190 (532)
Q Consensus 158 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~ 190 (532)
++.+.+.. .+...|.|+|..|+|||||...+..
T Consensus 7 ~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 7 SMFDKLWGSNKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp HHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred HHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhc
Confidence 34443444 4567789999999999999988764
No 469
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=88.99 E-value=0.22 Score=46.74 Aligned_cols=38 Identities=21% Similarity=0.389 Sum_probs=28.3
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCC
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSR 209 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~ 209 (532)
++|+|.|-||+||||+|..+..... . .. ..++-|+...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la-~-~G-~~VlliD~D~ 39 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLH-A-MG-KTIMVVGCDP 39 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH-T-TT-CCEEEEEECT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHH-H-CC-CcEEEEcCCC
Confidence 5788899999999999999988873 2 22 2566666543
No 470
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=88.98 E-value=0.23 Score=43.08 Aligned_cols=26 Identities=35% Similarity=0.402 Sum_probs=22.2
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
...-|.|+|..|+|||||...+....
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc
Confidence 34568999999999999999987764
No 471
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=88.97 E-value=0.22 Score=46.94 Aligned_cols=24 Identities=42% Similarity=0.436 Sum_probs=21.1
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHh
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNS 191 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~ 191 (532)
-.+++|+|..|.|||||.+.+..-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 348999999999999999998754
No 472
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=88.96 E-value=0.32 Score=47.94 Aligned_cols=26 Identities=38% Similarity=0.456 Sum_probs=22.7
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-.+++|+|+.|.|||||.+.+..-.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 34689999999999999999998754
No 473
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=88.92 E-value=0.34 Score=47.83 Aligned_cols=26 Identities=35% Similarity=0.456 Sum_probs=23.0
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-.+++|+|+.|.|||||.+.+..-.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 45789999999999999999998755
No 474
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=88.91 E-value=0.23 Score=43.66 Aligned_cols=25 Identities=24% Similarity=0.223 Sum_probs=21.0
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.--|.|+|..|+|||||...+.+..
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHSS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568899999999999998877654
No 475
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=88.85 E-value=0.22 Score=43.11 Aligned_cols=26 Identities=35% Similarity=0.485 Sum_probs=22.3
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+..-|.|+|..|+|||||.+.+.+..
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCc
Confidence 34568999999999999999998764
No 476
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=88.84 E-value=0.21 Score=43.40 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=21.0
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..|+|+|..|+|||||.+.+....
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999998653
No 477
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=88.80 E-value=0.24 Score=43.45 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.1
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHh
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNS 191 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~ 191 (532)
..+.+|+|..|.||||++.+++.-
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 348899999999999999999764
No 478
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.75 E-value=0.28 Score=44.21 Aligned_cols=26 Identities=27% Similarity=0.232 Sum_probs=22.9
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
....|.|+|..|+|||||...+....
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678999999999999999998765
No 479
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=88.75 E-value=0.24 Score=42.77 Aligned_cols=25 Identities=36% Similarity=0.460 Sum_probs=21.4
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..-|.|+|..|+|||||...+....
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 3458999999999999999998654
No 480
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=88.74 E-value=0.34 Score=43.09 Aligned_cols=32 Identities=31% Similarity=0.483 Sum_probs=23.6
Q ss_pred HHHHh-ccCCceEEEEecCCCCcHHHHHHHHHH
Q 009534 159 VWRCL-TEEPVGIVGLYGMGGVGKTTLLTQINN 190 (532)
Q Consensus 159 l~~~L-~~~~~~vi~I~G~gGiGKTtLa~~v~~ 190 (532)
+++.+ ...+...|.++|.+|+|||||.+.+.+
T Consensus 15 ~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 15 VLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHhhccCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 44444 223445688999999999999998864
No 481
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=88.74 E-value=0.24 Score=43.62 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=21.3
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.--|.|+|..|+|||||...+.+..
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhCC
Confidence 4568899999999999999887654
No 482
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=88.69 E-value=0.34 Score=44.28 Aligned_cols=23 Identities=35% Similarity=0.238 Sum_probs=20.2
Q ss_pred EEEEecCCCCcHHHHHHHHHHhc
Q 009534 170 IVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.|-+.|.||+||||+|..+....
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 47778999999999999888877
No 483
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=88.68 E-value=0.34 Score=44.56 Aligned_cols=48 Identities=21% Similarity=0.145 Sum_probs=32.3
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCHHHHHHH
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQLGKIQES 219 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~ 219 (532)
.-.++.|.|..|+||||+|..+..... ..=..++|++... ....+.+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~---~~~~~v~~~~~e~--~~~~~~~~ 69 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGL---KMGEPGIYVALEE--HPVQVRQN 69 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHH---HTTCCEEEEESSS--CHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEccC--CHHHHHHH
Confidence 346899999999999999988766542 1124677777544 34444443
No 484
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=88.66 E-value=0.26 Score=42.62 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=21.0
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.--|.|+|..|+|||||...+.+..
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCc
Confidence 3458899999999999999987653
No 485
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=88.65 E-value=0.25 Score=42.16 Aligned_cols=24 Identities=25% Similarity=0.284 Sum_probs=20.8
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
--|.|+|..|+|||||...+....
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 457899999999999999998654
No 486
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=88.61 E-value=0.25 Score=43.04 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=21.8
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..-|.|+|..|+|||||...+.+..
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4568899999999999999998764
No 487
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=88.57 E-value=0.16 Score=51.56 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=22.7
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.++|.|+|.+|+||||++..+....
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999988776
No 488
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=88.56 E-value=0.26 Score=42.60 Aligned_cols=25 Identities=32% Similarity=0.305 Sum_probs=21.9
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..-|.|+|..|+|||||...+.+..
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 4568899999999999999998765
No 489
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=88.52 E-value=0.24 Score=43.64 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=22.1
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHh
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNS 191 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~ 191 (532)
+...|.|+|..|+|||||...+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4677899999999999999999765
No 490
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=88.52 E-value=0.24 Score=47.44 Aligned_cols=54 Identities=15% Similarity=0.087 Sum_probs=35.4
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSRDLQLGKIQESIAKKI 224 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~~~~~~~l~~~i~~~l 224 (532)
.-.+++|.|..|+|||||++.+..... ... =..++|+.... ....+.+.+....
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~-~~~-G~~v~~~~~e~--~~~~~~~r~~~~~ 87 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWG-TAM-GKKVGLAMLEE--SVEETAEDLIGLH 87 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHH-HTS-CCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH-HHc-CCeEEEEeCcC--CHHHHHHHHHHHH
Confidence 456899999999999999999887762 111 11466665432 4455555554443
No 491
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=88.50 E-value=0.14 Score=54.40 Aligned_cols=46 Identities=17% Similarity=0.165 Sum_probs=32.3
Q ss_pred CcccccHHHHHHHHHHhccCCce-----------EEEEecCCCCcHHHHHHHHHHhc
Q 009534 147 PTVVGLQSTLDRVWRCLTEEPVG-----------IVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 147 ~~~vGr~~~~~~l~~~L~~~~~~-----------vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
+.++|.++-++.+.-.+..+..+ -+-++|..|+|||++|+.+.+..
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 34677776665555544443211 47789999999999999987765
No 492
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=88.49 E-value=0.23 Score=42.44 Aligned_cols=21 Identities=38% Similarity=0.471 Sum_probs=18.6
Q ss_pred EEEEecCCCCcHHHHHHHHHH
Q 009534 170 IVGLYGMGGVGKTTLLTQINN 190 (532)
Q Consensus 170 vi~I~G~gGiGKTtLa~~v~~ 190 (532)
-|.++|..|+|||||.+.+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999998854
No 493
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=88.49 E-value=0.27 Score=46.81 Aligned_cols=39 Identities=21% Similarity=0.336 Sum_probs=28.5
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhccCCCCCCCeEEEEEeCC
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSFLHTPNNFDFVIWEVVSR 209 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v~~ 209 (532)
.++|+|.|-||+||||+|..+..... . .. ..++-|+...
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La-~-~G-~rVlliD~D~ 40 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALA-E-MG-KKVMIVGCDP 40 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHH-H-TT-CCEEEEEECS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHH-H-CC-CeEEEEecCC
Confidence 46888899999999999999988773 1 12 2456666543
No 494
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=88.44 E-value=0.26 Score=43.07 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=21.0
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
--|.|+|..|+|||||...+.+..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 357899999999999999998765
No 495
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=88.43 E-value=0.25 Score=44.75 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=21.8
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.+|+|.|+.|+||||+++.+....
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 479999999999999999998765
No 496
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=88.42 E-value=0.25 Score=42.27 Aligned_cols=24 Identities=33% Similarity=0.384 Sum_probs=20.8
Q ss_pred eEEEEecCCCCcHHHHHHHHHHhc
Q 009534 169 GIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 169 ~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
--|.|+|..|+|||||...+....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 458899999999999999998654
No 497
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=88.40 E-value=0.23 Score=47.45 Aligned_cols=26 Identities=31% Similarity=0.449 Sum_probs=22.8
Q ss_pred CceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 167 PVGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 167 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
.-.+++|+|..|.|||||.+.+..-.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45689999999999999999997654
No 498
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=88.33 E-value=0.25 Score=43.65 Aligned_cols=25 Identities=36% Similarity=0.509 Sum_probs=21.1
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
...|.++|.+|+|||||.+.+.+..
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~ 47 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDR 47 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSC
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 4468999999999999999998754
No 499
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=88.32 E-value=0.27 Score=45.11 Aligned_cols=25 Identities=32% Similarity=0.315 Sum_probs=21.9
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
...++|.|+.|+||||+|+.+....
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999998876
No 500
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=88.31 E-value=0.27 Score=42.09 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=21.5
Q ss_pred ceEEEEecCCCCcHHHHHHHHHHhc
Q 009534 168 VGIVGLYGMGGVGKTTLLTQINNSF 192 (532)
Q Consensus 168 ~~vi~I~G~gGiGKTtLa~~v~~~~ 192 (532)
..-|.|+|..|+|||||...+....
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568899999999999999997654
Done!