Query 009535
Match_columns 532
No_of_seqs 201 out of 1436
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 14:18:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009535.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009535hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0626 Beta-glucosidase, lact 100.0 1E-139 3E-144 1099.7 44.3 477 39-518 31-512 (524)
2 PLN02849 beta-glucosidase 100.0 1E-131 3E-136 1068.0 48.8 462 37-517 22-485 (503)
3 PLN02998 beta-glucosidase 100.0 8E-131 2E-135 1061.0 46.5 459 40-515 26-488 (497)
4 PLN02814 beta-glucosidase 100.0 9E-131 2E-135 1062.0 46.1 463 38-519 21-487 (504)
5 COG2723 BglB Beta-glucosidase/ 100.0 8E-128 2E-132 1004.9 41.9 447 43-516 2-454 (460)
6 PRK13511 6-phospho-beta-galact 100.0 5E-127 1E-131 1030.3 45.8 452 43-517 3-468 (469)
7 TIGR01233 lacG 6-phospho-beta- 100.0 2E-126 5E-131 1022.9 47.6 447 43-517 2-466 (467)
8 PRK09593 arb 6-phospho-beta-gl 100.0 5E-126 1E-130 1022.1 46.8 449 41-518 2-476 (478)
9 PF00232 Glyco_hydro_1: Glycos 100.0 2E-127 4E-132 1033.5 35.4 449 43-517 3-455 (455)
10 PRK09589 celA 6-phospho-beta-g 100.0 3E-125 7E-130 1015.6 48.0 446 44-518 3-475 (476)
11 PRK15014 6-phospho-beta-glucos 100.0 2E-124 4E-129 1009.2 47.5 449 40-518 1-476 (477)
12 PRK09852 cryptic 6-phospho-bet 100.0 4E-124 9E-129 1004.7 47.4 446 44-518 3-472 (474)
13 TIGR03356 BGL beta-galactosida 100.0 3E-121 6E-126 976.2 42.3 427 45-508 1-427 (427)
14 smart00633 Glyco_10 Glycosyl h 99.6 1.4E-13 3E-18 138.1 22.9 249 120-507 2-253 (254)
15 PF00150 Cellulase: Cellulase 99.4 3.5E-12 7.5E-17 128.2 16.6 109 99-211 22-134 (281)
16 PF02449 Glyco_hydro_42: Beta- 99.2 1.4E-11 3.1E-16 130.3 8.9 109 98-211 10-141 (374)
17 PF07745 Glyco_hydro_53: Glyco 99.2 5.6E-09 1.2E-13 108.0 24.8 252 101-477 27-300 (332)
18 PF00331 Glyco_hydro_10: Glyco 99.1 2E-08 4.2E-13 104.3 23.3 301 46-510 7-318 (320)
19 PRK10150 beta-D-glucuronidase; 99.0 3.9E-08 8.4E-13 110.5 24.3 265 98-514 313-594 (604)
20 PF01229 Glyco_hydro_39: Glyco 98.9 6.7E-08 1.5E-12 105.8 19.6 291 100-511 41-359 (486)
21 COG3693 XynA Beta-1,4-xylanase 98.7 5.5E-06 1.2E-10 83.9 23.6 272 118-514 66-343 (345)
22 COG1874 LacA Beta-galactosidas 98.3 1.1E-06 2.3E-11 98.3 7.3 119 99-222 31-176 (673)
23 COG3867 Arabinogalactan endo-1 98.3 0.00017 3.7E-09 72.3 21.1 304 40-491 30-361 (403)
24 PF02836 Glyco_hydro_2_C: Glyc 98.0 0.00036 7.8E-09 71.6 18.6 92 97-208 35-132 (298)
25 COG2730 BglC Endoglucanase [Ca 97.8 4.7E-05 1E-09 81.7 8.8 110 101-210 76-193 (407)
26 PF01301 Glyco_hydro_35: Glyco 97.4 0.00048 1E-08 71.6 9.0 108 99-208 25-150 (319)
27 PLN03059 beta-galactosidase; P 97.3 0.0026 5.7E-08 72.8 14.0 95 99-196 60-166 (840)
28 PLN02161 beta-amylase 96.6 0.0095 2.1E-07 64.3 9.4 111 94-210 113-262 (531)
29 PF11790 Glyco_hydro_cc: Glyco 96.6 0.013 2.9E-07 58.3 9.7 66 401-478 152-217 (239)
30 PLN02803 beta-amylase 96.5 0.0099 2.1E-07 64.5 9.1 107 98-210 107-252 (548)
31 PF01373 Glyco_hydro_14: Glyco 96.5 0.0057 1.2E-07 64.7 6.7 106 97-209 15-151 (402)
32 PLN00197 beta-amylase; Provisi 96.5 0.012 2.5E-07 64.1 9.1 107 98-210 127-272 (573)
33 PLN02801 beta-amylase 96.4 0.018 3.8E-07 62.3 10.0 107 98-209 37-182 (517)
34 PF14587 Glyco_hydr_30_2: O-Gl 96.2 0.009 1.9E-07 62.9 6.3 100 108-210 57-185 (384)
35 PLN02905 beta-amylase 96.1 0.035 7.7E-07 61.2 10.4 102 94-199 282-422 (702)
36 PLN02705 beta-amylase 96.0 0.038 8.3E-07 60.7 10.1 100 96-199 266-404 (681)
37 PF13204 DUF4038: Protein of u 95.7 0.055 1.2E-06 55.5 9.7 104 100-208 32-156 (289)
38 PF03198 Glyco_hydro_72: Gluca 95.4 0.26 5.7E-06 50.6 13.0 48 99-161 54-101 (314)
39 KOG0496 Beta-galactosidase [Ca 94.3 0.15 3.2E-06 56.8 8.4 109 99-209 50-176 (649)
40 PF14488 DUF4434: Domain of un 93.9 0.33 7.3E-06 45.7 9.0 102 99-209 21-131 (166)
41 PRK09525 lacZ beta-D-galactosi 92.8 0.36 7.8E-06 57.9 8.9 94 96-209 369-464 (1027)
42 COG3250 LacZ Beta-galactosidas 92.2 0.55 1.2E-05 54.6 9.1 89 95-209 318-408 (808)
43 PRK10340 ebgA cryptic beta-D-g 92.0 0.5 1.1E-05 56.7 8.8 91 97-208 354-450 (1021)
44 COG3664 XynB Beta-xylosidase [ 84.7 1.6 3.4E-05 46.4 5.4 99 107-211 14-117 (428)
45 PF07488 Glyco_hydro_67M: Glyc 83.5 6.5 0.00014 40.4 9.0 87 97-197 56-150 (328)
46 PF10566 Glyco_hydro_97: Glyco 82.8 5.8 0.00013 40.4 8.4 118 70-194 8-149 (273)
47 COG3934 Endo-beta-mannanase [C 82.7 0.51 1.1E-05 50.8 0.9 109 100-210 28-150 (587)
48 PF00332 Glyco_hydro_17: Glyco 81.8 2.3 5E-05 44.1 5.3 82 402-494 212-302 (310)
49 KOG2233 Alpha-N-acetylglucosam 79.0 6.7 0.00015 42.6 7.6 112 97-208 77-248 (666)
50 smart00642 Aamy Alpha-amylase 79.0 5.5 0.00012 37.3 6.4 64 96-160 17-91 (166)
51 cd07945 DRE_TIM_CMS Leptospira 70.8 9.8 0.00021 38.9 6.3 82 101-193 77-158 (280)
52 PF14871 GHL6: Hypothetical gl 69.7 18 0.0004 32.6 7.1 58 102-161 4-66 (132)
53 PRK13792 lysozyme inhibitor; P 68.5 4 8.8E-05 36.7 2.5 48 16-63 4-54 (127)
54 PLN02361 alpha-amylase 68.1 12 0.00027 40.2 6.5 65 95-160 26-97 (401)
55 PF12891 Glyco_hydro_44: Glyco 67.9 55 0.0012 32.7 10.5 73 139-211 24-138 (239)
56 PRK05692 hydroxymethylglutaryl 66.2 18 0.0004 37.0 7.2 86 100-194 81-167 (287)
57 PF00128 Alpha-amylase: Alpha 66.1 12 0.00027 37.3 5.9 59 100-160 6-73 (316)
58 COG5309 Exo-beta-1,3-glucanase 65.6 20 0.00044 36.3 6.9 53 91-160 56-108 (305)
59 cd07948 DRE_TIM_HCS Saccharomy 64.7 20 0.00044 36.2 7.0 60 101-160 74-133 (262)
60 PLN02746 hydroxymethylglutaryl 64.5 17 0.00038 38.3 6.7 85 100-193 123-208 (347)
61 TIGR02090 LEU1_arch isopropylm 64.1 16 0.00035 38.7 6.5 61 100-160 73-133 (363)
62 cd03174 DRE_TIM_metallolyase D 64.1 18 0.00039 35.9 6.5 81 101-193 77-157 (265)
63 TIGR00612 ispG_gcpE 1-hydroxy- 62.5 53 0.0011 34.4 9.5 88 90-192 74-161 (346)
64 PF02055 Glyco_hydro_30: O-Gly 61.4 39 0.00084 37.5 9.0 99 405-513 319-421 (496)
65 PLN00196 alpha-amylase; Provis 60.6 15 0.00033 39.9 5.6 64 96-160 42-113 (428)
66 cd07939 DRE_TIM_NifV Streptomy 60.4 22 0.00048 35.6 6.5 59 101-159 72-130 (259)
67 PF02638 DUF187: Glycosyl hydr 60.2 37 0.0008 35.2 8.2 99 98-196 19-154 (311)
68 PRK05799 coproporphyrinogen II 59.0 23 0.00051 37.4 6.6 95 101-213 99-197 (374)
69 TIGR02402 trehalose_TreZ malto 58.2 38 0.00083 37.9 8.4 60 96-160 109-181 (542)
70 PRK12313 glycogen branching en 54.2 46 0.001 38.0 8.4 93 97-196 169-302 (633)
71 TIGR01210 conserved hypothetic 53.9 83 0.0018 32.6 9.5 108 101-223 117-229 (313)
72 PRK14040 oxaloacetate decarbox 53.8 37 0.00081 38.5 7.4 51 97-161 91-146 (593)
73 cd07938 DRE_TIM_HMGL 3-hydroxy 53.7 36 0.00079 34.6 6.7 84 101-193 76-160 (274)
74 COG0821 gcpE 1-hydroxy-2-methy 53.4 86 0.0019 32.9 9.2 86 93-193 79-164 (361)
75 PRK12581 oxaloacetate decarbox 53.2 36 0.00078 37.4 6.9 55 97-165 99-158 (468)
76 PRK05402 glycogen branching en 53.0 59 0.0013 37.9 9.1 93 97-196 264-397 (726)
77 TIGR02660 nifV_homocitr homoci 52.7 32 0.0007 36.4 6.4 81 101-196 75-155 (365)
78 cd06543 GH18_PF-ChiA-like PF-C 52.4 63 0.0014 33.3 8.3 85 105-197 19-105 (294)
79 PRK09058 coproporphyrinogen II 52.1 53 0.0011 35.9 8.1 104 101-222 163-270 (449)
80 PRK14041 oxaloacetate decarbox 52.1 44 0.00094 36.8 7.4 55 97-165 89-148 (467)
81 cd06592 GH31_glucosidase_KIAA1 51.8 1.3E+02 0.0028 31.0 10.5 105 99-209 31-167 (303)
82 PRK11858 aksA trans-homoaconit 50.9 40 0.00087 35.9 6.8 59 101-159 78-136 (378)
83 PLN02784 alpha-amylase 50.6 36 0.00077 40.1 6.6 65 95-160 518-589 (894)
84 cd07937 DRE_TIM_PC_TC_5S Pyruv 50.6 77 0.0017 32.2 8.5 68 100-193 93-160 (275)
85 TIGR01515 branching_enzym alph 49.2 1.2E+02 0.0025 34.7 10.5 95 97-196 155-288 (613)
86 cd07944 DRE_TIM_HOA_like 4-hyd 48.6 57 0.0012 33.0 7.2 65 101-193 85-149 (266)
87 TIGR00433 bioB biotin syntheta 47.8 42 0.00091 34.0 6.2 54 101-158 123-177 (296)
88 TIGR02403 trehalose_treC alpha 47.1 31 0.00066 38.7 5.4 63 96-160 25-96 (543)
89 PRK09441 cytoplasmic alpha-amy 47.0 32 0.0007 37.8 5.5 66 95-160 19-102 (479)
90 PF05089 NAGLU: Alpha-N-acetyl 46.7 36 0.00077 35.7 5.4 111 97-208 18-184 (333)
91 cd07941 DRE_TIM_LeuA3 Desulfob 46.3 54 0.0012 33.2 6.6 81 102-193 82-162 (273)
92 PRK12568 glycogen branching en 45.9 76 0.0016 37.0 8.3 95 97-196 268-401 (730)
93 cd06593 GH31_xylosidase_YicI Y 45.5 1.1E+02 0.0024 31.3 8.9 107 99-208 25-160 (308)
94 PF03659 Glyco_hydro_71: Glyco 45.5 85 0.0018 33.7 8.2 50 99-159 18-67 (386)
95 PLN02447 1,4-alpha-glucan-bran 44.7 38 0.00082 39.5 5.7 94 96-196 248-383 (758)
96 cd06598 GH31_transferase_CtsZ 44.5 1.3E+02 0.0029 31.0 9.4 110 100-211 26-168 (317)
97 PRK12331 oxaloacetate decarbox 43.3 84 0.0018 34.4 7.9 52 100-165 98-149 (448)
98 PRK12858 tagatose 1,6-diphosph 42.6 96 0.0021 32.7 7.9 52 104-159 112-163 (340)
99 COG1523 PulA Type II secretory 42.5 46 0.00099 38.5 5.9 57 104-160 206-286 (697)
100 PRK14705 glycogen branching en 42.2 1.2E+02 0.0025 37.6 9.5 88 104-196 772-897 (1224)
101 PRK07379 coproporphyrinogen II 41.5 1.1E+02 0.0024 32.8 8.4 103 101-221 115-221 (400)
102 PRK14706 glycogen branching en 41.2 88 0.0019 35.9 8.0 90 105-196 175-299 (639)
103 PRK09505 malS alpha-amylase; R 41.0 38 0.00082 39.1 5.0 61 100-160 232-313 (683)
104 cd06602 GH31_MGAM_SI_GAA This 40.9 1.5E+02 0.0031 31.2 9.0 108 100-211 26-169 (339)
105 PRK10933 trehalose-6-phosphate 40.7 60 0.0013 36.5 6.4 63 96-160 31-102 (551)
106 PRK14511 maltooligosyl trehalo 40.6 71 0.0015 37.9 7.1 56 98-160 20-90 (879)
107 PRK12399 tagatose 1,6-diphosph 40.4 1.3E+02 0.0028 31.4 8.2 58 104-165 111-168 (324)
108 cd06591 GH31_xylosidase_XylS X 39.7 1.4E+02 0.0031 30.8 8.7 108 100-211 26-163 (319)
109 PRK04161 tagatose 1,6-diphosph 39.5 1.4E+02 0.003 31.3 8.3 91 102-202 111-204 (329)
110 cd07947 DRE_TIM_Re_CS Clostrid 39.2 87 0.0019 32.0 6.8 60 100-159 76-135 (279)
111 PF06291 Lambda_Bor: Bor prote 39.0 29 0.00063 29.7 2.8 22 18-39 4-25 (97)
112 TIGR03234 OH-pyruv-isom hydrox 38.8 77 0.0017 31.2 6.4 68 95-165 81-150 (254)
113 PF12876 Cellulase-like: Sugar 38.3 17 0.00036 30.2 1.2 19 191-209 1-22 (88)
114 PF13627 LPAM_2: Prokaryotic l 38.0 25 0.00053 22.3 1.6 18 19-36 3-20 (24)
115 PRK03705 glycogen debranching 37.7 62 0.0013 37.2 6.1 55 104-160 185-263 (658)
116 TIGR02635 RhaI_grampos L-rhamn 37.7 2.6E+02 0.0055 30.0 10.3 89 92-197 35-130 (378)
117 cd07940 DRE_TIM_IPMS 2-isoprop 37.5 79 0.0017 31.8 6.2 79 101-193 72-154 (268)
118 PRK08599 coproporphyrinogen II 36.1 1.6E+02 0.0036 31.0 8.7 96 101-212 100-197 (377)
119 TIGR03217 4OH_2_O_val_ald 4-hy 35.5 2.2E+02 0.0048 29.8 9.3 46 101-160 90-135 (333)
120 PRK08195 4-hyroxy-2-oxovalerat 35.3 1.3E+02 0.0028 31.7 7.5 68 101-197 91-158 (337)
121 PF02065 Melibiase: Melibiase; 35.2 2.2E+02 0.0048 30.6 9.4 92 99-196 59-183 (394)
122 COG1501 Alpha-glucosidases, fa 35.0 1.1E+02 0.0024 35.9 7.6 100 110-213 294-421 (772)
123 TIGR01108 oadA oxaloacetate de 34.6 1.3E+02 0.0029 34.1 7.9 52 100-165 93-144 (582)
124 TIGR01211 ELP3 histone acetylt 34.1 1.5E+02 0.0033 33.1 8.2 107 101-224 206-317 (522)
125 COG3589 Uncharacterized conser 34.0 69 0.0015 33.6 5.1 72 101-187 19-90 (360)
126 TIGR00539 hemN_rel putative ox 33.8 88 0.0019 32.9 6.1 61 101-166 100-163 (360)
127 cd06601 GH31_lyase_GLase GLase 32.9 1.9E+02 0.0041 30.3 8.3 107 102-213 28-139 (332)
128 cd06603 GH31_GANC_GANAB_alpha 32.7 2E+02 0.0043 30.0 8.5 71 142-212 67-167 (339)
129 cd07943 DRE_TIM_HOA 4-hydroxy- 32.5 2.6E+02 0.0056 28.0 9.0 46 101-160 88-133 (263)
130 cd02803 OYE_like_FMN_family Ol 32.1 2.8E+02 0.006 28.5 9.5 39 123-162 62-100 (327)
131 cd02742 GH20_hexosaminidase Be 32.1 1.1E+02 0.0023 31.5 6.3 65 99-169 17-99 (303)
132 PRK10785 maltodextrin glucosid 31.6 73 0.0016 36.2 5.3 57 100-160 181-247 (598)
133 cd06600 GH31_MGAM-like This fa 31.4 2.7E+02 0.0058 28.8 9.1 107 101-211 27-164 (317)
134 TIGR02456 treS_nterm trehalose 30.6 1.1E+02 0.0023 34.3 6.4 59 98-160 28-97 (539)
135 PRK12677 xylose isomerase; Pro 30.5 2.9E+02 0.0064 29.5 9.4 90 100-197 33-128 (384)
136 PLN02389 biotin synthase 30.4 1.2E+02 0.0026 32.4 6.5 58 99-160 176-234 (379)
137 PF10566 Glyco_hydro_97: Glyco 30.3 78 0.0017 32.3 4.8 62 100-173 108-169 (273)
138 TIGR02401 trehalose_TreY malto 29.8 84 0.0018 37.0 5.5 56 98-160 16-86 (825)
139 PRK00366 ispG 4-hydroxy-3-meth 29.7 2.8E+02 0.006 29.5 8.7 74 107-192 97-170 (360)
140 cd06565 GH20_GcnA-like Glycosy 29.7 1.6E+02 0.0034 30.4 7.0 64 99-169 18-87 (301)
141 TIGR01212 radical SAM protein, 29.4 3.5E+02 0.0076 27.8 9.5 72 139-223 163-234 (302)
142 cd06545 GH18_3CO4_chitinase Th 29.3 1.5E+02 0.0032 29.5 6.5 74 117-196 26-99 (253)
143 PLN02960 alpha-amylase 29.3 89 0.0019 37.0 5.5 95 95-196 413-549 (897)
144 smart00729 Elp3 Elongator prot 28.9 2.7E+02 0.0058 25.5 8.0 56 100-159 99-157 (216)
145 PRK09389 (R)-citramalate synth 28.7 1.4E+02 0.003 33.1 6.7 61 100-160 75-135 (488)
146 PRK06294 coproporphyrinogen II 28.6 2.5E+02 0.0055 29.7 8.5 94 101-212 103-200 (370)
147 PRK14510 putative bifunctional 28.1 80 0.0017 39.1 5.2 66 95-160 182-268 (1221)
148 PF00682 HMGL-like: HMGL-like 27.8 1.2E+02 0.0027 29.5 5.6 77 104-194 73-149 (237)
149 cd06542 GH18_EndoS-like Endo-b 27.4 1.6E+02 0.0035 29.0 6.5 55 138-196 50-104 (255)
150 PF03511 Fanconi_A: Fanconi an 27.3 40 0.00087 26.3 1.6 37 122-161 19-55 (64)
151 PHA02152 hypothetical protein 27.2 38 0.00081 27.9 1.5 36 60-110 42-78 (96)
152 cd06419 GH25_muramidase_2 Unch 27.1 1.8E+02 0.0038 27.9 6.4 26 178-203 109-134 (190)
153 PRK13209 L-xylulose 5-phosphat 27.0 4.7E+02 0.01 26.0 9.9 53 99-156 22-74 (283)
154 PRK01060 endonuclease IV; Prov 26.3 2.4E+02 0.0052 28.1 7.6 51 100-156 14-64 (281)
155 TIGR02629 L_rham_iso_rhiz L-rh 25.4 2.3E+02 0.0049 30.7 7.3 88 101-203 73-171 (412)
156 PRK13398 3-deoxy-7-phosphohept 25.3 2.5E+02 0.0053 28.5 7.4 70 93-166 36-105 (266)
157 cd06599 GH31_glycosidase_Aec37 24.7 5.3E+02 0.012 26.6 9.9 109 100-210 31-171 (317)
158 cd02874 GH18_CFLE_spore_hydrol 24.7 1.4E+02 0.003 30.6 5.6 84 104-196 16-103 (313)
159 PF04551 GcpE: GcpE protein; 24.6 1.8E+02 0.0038 30.9 6.2 82 92-191 78-169 (359)
160 TIGR01232 lacD tagatose 1,6-di 24.4 3.6E+02 0.0079 28.2 8.4 60 103-166 111-170 (325)
161 PRK09856 fructoselysine 3-epim 24.2 1E+02 0.0022 30.7 4.4 62 94-157 86-147 (275)
162 PF01261 AP_endonuc_2: Xylose 24.1 69 0.0015 29.9 3.0 63 95-157 68-130 (213)
163 PRK05660 HemN family oxidoredu 24.1 2.9E+02 0.0062 29.4 8.0 93 101-210 107-202 (378)
164 KOG0470 1,4-alpha-glucan branc 23.6 87 0.0019 36.1 4.0 65 97-161 253-333 (757)
165 cd06525 GH25_Lyc-like Lyc mura 23.5 4.5E+02 0.0097 24.6 8.5 51 102-165 12-62 (184)
166 cd02932 OYE_YqiM_FMN Old yello 23.2 8.2E+02 0.018 25.3 11.1 39 123-162 62-100 (336)
167 PRK14507 putative bifunctional 23.2 2.5E+02 0.0054 36.0 8.1 66 97-169 757-844 (1693)
168 PF11775 CobT_C: Cobalamin bio 22.9 2.4E+02 0.0053 27.8 6.5 66 396-469 116-184 (219)
169 TIGR00423 radical SAM domain p 22.9 3.5E+02 0.0075 27.8 8.1 58 100-165 106-170 (309)
170 TIGR03471 HpnJ hopanoid biosyn 22.9 1.8E+02 0.004 31.7 6.4 60 101-165 287-348 (472)
171 PHA02771 hypothetical protein; 22.9 76 0.0016 26.7 2.5 44 407-481 20-64 (90)
172 TIGR02631 xylA_Arthro xylose i 22.8 4.3E+02 0.0094 28.2 9.0 92 99-198 33-130 (382)
173 PRK10340 ebgA cryptic beta-D-g 22.3 2E+02 0.0044 34.9 7.0 88 407-517 497-604 (1021)
174 TIGR02100 glgX_debranch glycog 22.2 1.5E+02 0.0032 34.4 5.7 57 104-160 190-266 (688)
175 TIGR00542 hxl6Piso_put hexulos 22.0 7.2E+02 0.016 24.6 10.2 82 100-193 18-101 (279)
176 PRK13523 NADPH dehydrogenase N 21.9 8.4E+02 0.018 25.5 10.8 34 131-164 73-106 (337)
177 cd06568 GH20_SpHex_like A subg 21.8 2.6E+02 0.0057 29.1 7.0 65 99-169 19-102 (329)
178 PRK13210 putative L-xylulose 5 21.6 7.5E+02 0.016 24.4 10.2 53 100-157 18-70 (284)
179 PF09585 Lin0512_fam: Conserve 21.3 84 0.0018 27.7 2.6 31 418-461 2-32 (113)
180 cd00927 Cyt_c_Oxidase_VIc Cyto 20.8 57 0.0012 26.2 1.4 20 93-112 45-66 (70)
181 PRK09282 pyruvate carboxylase 20.7 3.2E+02 0.0069 31.1 7.8 48 100-161 98-145 (592)
182 PRK05904 coproporphyrinogen II 20.6 4.1E+02 0.0089 28.0 8.2 93 101-210 103-198 (353)
183 TIGR00419 tim triosephosphate 20.6 2E+02 0.0043 28.1 5.3 43 105-159 75-117 (205)
184 cd00019 AP2Ec AP endonuclease 20.6 3.9E+02 0.0084 26.6 7.8 54 98-157 10-64 (279)
185 PF13547 GTA_TIM: GTA TIM-barr 20.4 1.5E+02 0.0033 30.4 4.5 41 416-456 207-264 (299)
186 PRK09936 hypothetical protein; 20.2 9.1E+02 0.02 25.0 10.1 63 99-170 39-101 (296)
187 cd06604 GH31_glucosidase_II_Ma 20.1 5.2E+02 0.011 26.9 8.9 68 142-211 67-163 (339)
188 PRK05628 coproporphyrinogen II 20.1 5.1E+02 0.011 27.3 8.9 96 101-213 108-206 (375)
No 1
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-139 Score=1099.69 Aligned_cols=477 Identities=53% Similarity=0.963 Sum_probs=441.5
Q ss_pred CCCCCCCCCCcEEeeecccccccCCcCCCCCcccccccccc-CCCCccCCCCCCccchhhhchHHHHHHHHHcCCCeeEe
Q 009535 39 SLDPSPFPSNFLFGTSTSSYQVEGAYVSEGKGLSNWDVFTH-TPGNIDDGSSGDVAVDHYHRYLEDIDLMESLGVNSYRF 117 (532)
Q Consensus 39 ~~~~~~fP~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~-~~~~~~~~~~~~~a~d~y~ry~eDi~l~k~lG~~~~R~ 117 (532)
.+.+..||++|+||+||||||+|||+++|||++|+||.|+| .|+++.+++++|+|||+||||+|||+|||+||+++|||
T Consensus 31 ~~~r~~FP~~F~FGtAtSAyQ~EGA~~e~gRg~svWD~f~~~~p~~~~~~~ngdva~D~Yh~ykeDv~Lmk~lgv~afRF 110 (524)
T KOG0626|consen 31 KFSRADFPKGFLFGTATSAYQVEGAANEDGRGPSVWDTFTHKYPGKICDGSNGDVAVDFYHRYKEDVKLMKELGVDAFRF 110 (524)
T ss_pred cccccCCCCCceeeccchHHHhhhhhccCCCCCchhhhhhccCCcccccCCCCCeechhhhhhHHHHHHHHHcCCCeEEE
Confidence 46789999999999999999999999999999999999998 56588888999999999999999999999999999999
Q ss_pred ccccceeecCCC-CCCCChhHHHHHHHHHHHHHHcCCccEEEecCCCCcHhHHHhhCCCCChhhHHHHHHHHHHHHHHhC
Q 009535 118 SISWARILPKGR-FGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSFG 196 (532)
Q Consensus 118 si~W~ri~P~~~-~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~fg 196 (532)
|||||||+|.|+ .+.+|++||+||+++|++|+++||+|+|||+|||+|++|+++||||+|++++++|.+||+.||++||
T Consensus 111 SIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTLfHwDlPq~LeDeYgGwLn~~ivedF~~yA~~CF~~fG 190 (524)
T KOG0626|consen 111 SISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTLFHWDLPQALEDEYGGWLNPEIVEDFRDYADLCFQEFG 190 (524)
T ss_pred EeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCCCCHHHHHHhccccCHHHHHHHHHHHHHHHHHhc
Confidence 999999999996 4579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEecCchhhhhcccccCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhccCCCCCcEEEEe
Q 009535 197 DRVKYWFTINEPNMQVTLSYRLGCHPPAHCSQPFGNCSQGNSEEEPFIAAHNLILSHATAVDIYRTKYQKDQGGSIGIIL 276 (532)
Q Consensus 197 d~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAha~A~~~~r~~~~~~~~gkIGi~~ 276 (532)
|+||+|+|||||++++..||..|..|||+|+.++.+|..|+|++++|+|+||||+|||+||++||++++..|+|+|||++
T Consensus 191 DrVK~WiT~NEP~v~s~~gY~~G~~aPGrCs~~~~~c~~g~s~~epYiv~HNllLAHA~Av~~yr~kyk~~Q~G~IGi~~ 270 (524)
T KOG0626|consen 191 DRVKHWITFNEPNVFSIGGYDTGTKAPGRCSKYVGNCSAGNSGTEPYIVAHNLLLAHAAAVDLYRKKYKKKQGGKIGIAL 270 (524)
T ss_pred ccceeeEEecccceeeeehhccCCCCCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhhcCCeEeEEE
Confidence 99999999999999999999999999999998777999999999999999999999999999999999999999999999
Q ss_pred eCceeecCCCCHHHHHHHHHHHHHhccccccceecCCCCHHHHHHHhccCCCCCHHHHHHhhcCcceeEeecCcceEEec
Q 009535 277 NTLWFEPISSSTADKLAAERAQSFYMNWFLDPIIYGKYPAEMMNIVGSTLPKFSSRDKEKLKQGLDFIGINHYTSTYVQD 356 (532)
Q Consensus 277 ~~~~~~P~~~~~~D~~aa~~~~~~~~~~~~dp~~~G~yP~~~~~~lg~~lp~ft~ed~~~ikg~~DFlGiNyYt~~~v~~ 356 (532)
+..|++|.+++++|++||+|+.+|..+|+++|++.|+||+.|++.+|+|||.||++|.+++||+.||+|||||++.+++.
T Consensus 271 ~~~w~eP~~~s~~D~~Aa~Ra~~F~~gw~l~p~~~GdYP~~Mk~~vg~rLP~FT~ee~~~lKGS~DFvGiNyYts~~~~~ 350 (524)
T KOG0626|consen 271 SARWFEPYDDSKEDKEAAERALDFFLGWFLEPLTFGDYPDEMKERVGSRLPKFTEEESKLLKGSYDFVGINYYTSRYVKH 350 (524)
T ss_pred eeeeeccCCCChHHHHHHHHHHHhhhhhhhcccccCCcHHHHHHHhcccCCCCCHHHHHHhcCchhhceeehhhhhhhhc
Confidence 99999999999999999999999999999999889999999999999999999999999999999999999999999988
Q ss_pred CCCCCCCCCCCCCCCCCccccccccCC-CCCCCCCCCCCcccChHHHHHHHHHHHHHcCCCCEEEeecCccCCCCCCCCC
Q 009535 357 CIFSACKPGPGASKTEGFCLQNSQKHG-VPLGEPTTLFWLNVYPQGMWKIIKYIKERYKNTPMFITENGYGEICMPNSST 435 (532)
Q Consensus 357 ~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~w~~i~P~GL~~~L~~~~~rY~~~PI~ITENG~~~~~~~~~~~ 435 (532)
...... ++.+++..|..+.. ..++ ...+..+.+.|..++|+||+++|++++++|+||||||||||+++.+....+.
T Consensus 351 ~~~~~~-~~~~~~~~d~~~~~--~~~~~~~~~~~~~~~~~~v~P~Glr~~L~yiK~~Y~np~iyItENG~~d~~~~~~~~ 427 (524)
T KOG0626|consen 351 LKPPPD-PSQPGWSTDSGVDW--TLEGNDLIGPKAGSDWLPVYPWGLRKLLNYIKDKYGNPPIYITENGFDDLDGGTKSL 427 (524)
T ss_pred cCCCCC-CCCcccccccceee--eecccccccccccccceeeccHHHHHHHHHHHhhcCCCcEEEEeCCCCcccccccch
Confidence 653221 12344555544433 2222 3556666778989999999999999999999999999999999987554455
Q ss_pred CCccCchhhHHHHHHHHHHHHHHHH-cCCCeEEEEeecccccccccCCCCCccceEEecCCC-CcccccchHHHHHHHHH
Q 009535 436 EDLLNDVKRVEYMASYLDALITAVR-DGADVRGYFVWSLLDSFEWTYGYTARFGLHHVDFAT-LKRTPKLSATWYKHFIA 513 (532)
Q Consensus 436 ~g~i~D~~Ri~yl~~hl~~v~~Ai~-dGv~V~GY~~WSl~Dn~EW~~Gy~~rfGL~~VD~~~-~~R~pK~S~~~y~~ii~ 513 (532)
...++|..||+|++.||++|++||. +||||+|||+|||||||||..||+.||||++|||++ ++|+||.|++||+++++
T Consensus 428 ~~~l~D~~Ri~Y~~~~L~~~~kAi~~dgvnv~GYf~WSLmDnfEw~~Gy~~RFGlyyVDf~d~l~R~pK~Sa~wy~~fl~ 507 (524)
T KOG0626|consen 428 EVALKDTKRIEYLQNHLQAVLKAIKEDGVNVKGYFVWSLLDNFEWLDGYKVRFGLYYVDFKDPLKRYPKLSAKWYKKFLK 507 (524)
T ss_pred hhhhcchHHHHHHHHHHHHHHHHHHhcCCceeeEEEeEcccchhhhcCcccccccEEEeCCCCCcCCchhHHHHHHHHHc
Confidence 6678999999999999999999996 999999999999999999999999999999999995 89999999999999999
Q ss_pred hCCCC
Q 009535 514 KHKLI 518 (532)
Q Consensus 514 ~~~~~ 518 (532)
.+...
T Consensus 508 ~~~~~ 512 (524)
T KOG0626|consen 508 GKVKP 512 (524)
T ss_pred CCCCC
Confidence 88764
No 2
>PLN02849 beta-glucosidase
Probab=100.00 E-value=1.5e-131 Score=1067.99 Aligned_cols=462 Identities=44% Similarity=0.841 Sum_probs=413.1
Q ss_pred cCCCCCCCCCCCcEEeeecccccccCCcCCCCCccccccccccCCCCccCCCCCCccchhhhchHHHHHHHHHcCCCeeE
Q 009535 37 KQSLDPSPFPSNFLFGTSTSSYQVEGAYVSEGKGLSNWDVFTHTPGNIDDGSSGDVAVDHYHRYLEDIDLMESLGVNSYR 116 (532)
Q Consensus 37 ~~~~~~~~fP~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~~~~~~~~~~~~~a~d~y~ry~eDi~l~k~lG~~~~R 116 (532)
+..+.+.+||++|+||+|||||||||++++||||+|+||.|.+.+ ++.++++||||||||+|||+|||+||+++||
T Consensus 22 ~~~~~~~~FP~dFlwG~AtsA~QiEGa~~~~Gkg~SiwD~~~~~~----~~~~~~~a~D~YhrY~eDI~Lm~~lG~~aYR 97 (503)
T PLN02849 22 SSDYSRSDFPEGFVFGAGTSAYQWEGAFDEDGRKPSVWDTFLHSR----NMSNGDIACDGYHKYKEDVKLMVETGLDAFR 97 (503)
T ss_pred cCCCccccCCCCCEEEeechhhhhcCCcCCCCCcCcceeeeeccC----CCCCCCccccHHHhHHHHHHHHHHcCCCeEE
Confidence 444778889999999999999999999999999999999998854 3467899999999999999999999999999
Q ss_pred eccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecCCCCcHhHHHhhCCCCChhhHHHHHHHHHHHHHHhC
Q 009535 117 FSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSFG 196 (532)
Q Consensus 117 ~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~fg 196 (532)
|||+||||+|+|. |.+|++||+||+++|++|+++||+|||||+|||+|+||+++||||.|++++++|++||+.|+++||
T Consensus 98 fSIsWsRI~P~G~-g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~nr~~v~~F~~YA~~~f~~fg 176 (503)
T PLN02849 98 FSISWSRLIPNGR-GSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHPQYLEDDYGGWINRRIIKDFTAYADVCFREFG 176 (503)
T ss_pred EeccHHhcCcCCC-CCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCcHHHHHhcCCcCCchHHHHHHHHHHHHHHHhc
Confidence 9999999999987 899999999999999999999999999999999999999989999999999999999999999999
Q ss_pred CCceeEEEecCchhhhhcccccCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhccCCCCCcEEEEe
Q 009535 197 DRVKYWFTINEPNMQVTLSYRLGCHPPAHCSQPFGNCSQGNSEEEPFIAAHNLILSHATAVDIYRTKYQKDQGGSIGIIL 276 (532)
Q Consensus 197 d~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAha~A~~~~r~~~~~~~~gkIGi~~ 276 (532)
|+|++|+|||||++++..||..|.+|||.+......|+.+++.++.++++||+++|||+||++||++++..++++||+++
T Consensus 177 DrVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~A~~~~~~~~~~~~~~~IGi~~ 256 (503)
T PLN02849 177 NHVKFWTTINEANIFTIGGYNDGITPPGRCSSPGRNCSSGNSSTEPYIVGHNLLLAHASVSRLYKQKYKDMQGGSIGFSL 256 (503)
T ss_pred CcCCEEEEecchhhhhhchhhhccCCCCccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEE
Confidence 99999999999999999999999999997442112465555567789999999999999999999976555789999999
Q ss_pred eCceeecCCCCHHHHHHHHHHHHHhccccccceecCCCCHHHHHHHhccCCCCCHHHHHHhhcCcceeEeecCcceEEec
Q 009535 277 NTLWFEPISSSTADKLAAERAQSFYMNWFLDPIIYGKYPAEMMNIVGSTLPKFSSRDKEKLKQGLDFIGINHYTSTYVQD 356 (532)
Q Consensus 277 ~~~~~~P~~~~~~D~~aa~~~~~~~~~~~~dp~~~G~yP~~~~~~lg~~lp~ft~ed~~~ikg~~DFlGiNyYt~~~v~~ 356 (532)
+..+++|.+++++|++||++++++.++||+||++.|+||+.|++.++.++|.|+++|+++|++++||||||||++.+|+.
T Consensus 257 ~~~~~~P~~~~~~D~~AA~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~i~~~~DFlGiNyYt~~~v~~ 336 (503)
T PLN02849 257 FALGFTPSTSSKDDDIATQRAKDFYLGWMLEPLIFGDYPDEMKRTIGSRLPVFSKEESEQVKGSSDFIGVIHYLAASVTN 336 (503)
T ss_pred ECceeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEeccchhhccc
Confidence 99999999999999999999999999999999999999999999999899999999999999999999999999999875
Q ss_pred CCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCcccChHHHHHHHHHHHHHcCCCCEEEeecCccCCCCCCCCCC
Q 009535 357 CIFSACKPGPGASKTEGFCLQNSQKHGVPLGEPTTLFWLNVYPQGMWKIIKYIKERYKNTPMFITENGYGEICMPNSSTE 436 (532)
Q Consensus 357 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~w~~i~P~GL~~~L~~~~~rY~~~PI~ITENG~~~~~~~~~~~~ 436 (532)
.......+..+.+.. ..+++....+++|| +|+|+||+++|+++++||++|||||||||++..++ .+
T Consensus 337 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~~gw-~i~P~Gl~~~L~~~~~rY~~pPi~ITENG~~~~d~----~~ 402 (503)
T PLN02849 337 IKIKPSLSGNPDFYS---------DMGVSLGKFSAFEY-AVAPWAMESVLEYIKQSYGNPPVYILENGTPMKQD----LQ 402 (503)
T ss_pred CCCCCCCCCCCcccc---------ccCCCCCccCCCCC-eEChHHHHHHHHHHHHhcCCCCEEEeCCCCCccCC----CC
Confidence 321100000001100 01122234567899 59999999999999999998899999999998763 45
Q ss_pred CccCchhhHHHHHHHHHHHHHHHHcCCCeEEEEeecccccccccCCCCCccceEEecCCC--CcccccchHHHHHHHHHh
Q 009535 437 DLLNDVKRVEYMASYLDALITAVRDGADVRGYFVWSLLDSFEWTYGYTARFGLHHVDFAT--LKRTPKLSATWYKHFIAK 514 (532)
Q Consensus 437 g~i~D~~Ri~yl~~hl~~v~~Ai~dGv~V~GY~~WSl~Dn~EW~~Gy~~rfGL~~VD~~~--~~R~pK~S~~~y~~ii~~ 514 (532)
++++|++||+||++||++|++||+|||||+||++|||+|||||..||++|||||+||++| ++|+||+|++||+++|++
T Consensus 403 ~~v~D~~Ri~Yl~~hL~~l~~Ai~dGv~V~GY~~WSl~DnfEW~~Gy~~RfGLi~VD~~~~~~~R~pK~S~~wy~~ii~~ 482 (503)
T PLN02849 403 LQQKDTPRIEYLHAYIGAVLKAVRNGSDTRGYFVWSFMDLYELLKGYEFSFGLYSVNFSDPHRKRSPKLSAHWYSAFLKG 482 (503)
T ss_pred CcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCCCCcceecccHHHHHHHHHHh
Confidence 689999999999999999999999999999999999999999999999999999999995 599999999999999999
Q ss_pred CCC
Q 009535 515 HKL 517 (532)
Q Consensus 515 ~~~ 517 (532)
|+.
T Consensus 483 ~~~ 485 (503)
T PLN02849 483 NST 485 (503)
T ss_pred CCC
Confidence 874
No 3
>PLN02998 beta-glucosidase
Probab=100.00 E-value=7.8e-131 Score=1061.03 Aligned_cols=459 Identities=46% Similarity=0.853 Sum_probs=407.3
Q ss_pred CCCCCCCCCcEEeeecccccccCCcCCCCCccccccccccCCCCccCCCCCCccchhhhchHHHHHHHHHcCCCeeEecc
Q 009535 40 LDPSPFPSNFLFGTSTSSYQVEGAYVSEGKGLSNWDVFTHTPGNIDDGSSGDVAVDHYHRYLEDIDLMESLGVNSYRFSI 119 (532)
Q Consensus 40 ~~~~~fP~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~~~~~~~~~~~~~a~d~y~ry~eDi~l~k~lG~~~~R~si 119 (532)
+.+.+||++|+||+|||||||||++++||||+|+||.|.+ ++. .+..++++||||||||+|||+|||+||+|+|||||
T Consensus 26 ~~~~~FP~~FlwG~AtSA~QvEGa~~~~Gkg~siwD~~~~-~~~-~~~~~~~~a~D~Yhry~EDi~lmk~lG~~~YRfSI 103 (497)
T PLN02998 26 YSRNDFPPGFVFGSGTSAYQVEGAADEDGRTPSIWDVFAH-AGH-SGVAAGNVACDQYHKYKEDVKLMADMGLEAYRFSI 103 (497)
T ss_pred CccccCCCCCEEeeechHHHhCCCcCCCCCccchhhcccc-cCc-CCCCCCcccccHHHhhHHHHHHHHHcCCCeEEeec
Confidence 5677899999999999999999999999999999999998 442 22247899999999999999999999999999999
Q ss_pred ccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecCCCCcHhHHHhhCCCCChhhHHHHHHHHHHHHHHhCCCc
Q 009535 120 SWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSFGDRV 199 (532)
Q Consensus 120 ~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~fgd~v 199 (532)
+||||+|+|+ |.+|++||+||+++|++|+++||+|+|||+|||+|+||+++||||+|++++++|++||+.|+++|||+|
T Consensus 104 sWsRI~P~G~-g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP~~L~~~yGGW~n~~~v~~F~~YA~~~~~~fgdrV 182 (497)
T PLN02998 104 SWSRLLPSGR-GPINPKGLQYYNNLIDELITHGIQPHVTLHHFDLPQALEDEYGGWLSQEIVRDFTAYADTCFKEFGDRV 182 (497)
T ss_pred cHHhcCcCCC-CCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhhCCcCCchHHHHHHHHHHHHHHHhcCcC
Confidence 9999999987 899999999999999999999999999999999999999989999999999999999999999999999
Q ss_pred eeEEEecCchhhhhcccccCCCCCCCCCCCCC-CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhccCCCCCcEEEEeeC
Q 009535 200 KYWFTINEPNMQVTLSYRLGCHPPAHCSQPFG-NCSQGNSEEEPFIAAHNLILSHATAVDIYRTKYQKDQGGSIGIILNT 278 (532)
Q Consensus 200 ~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~-~~~~~~~~~~~~~~~hn~llAha~A~~~~r~~~~~~~~gkIGi~~~~ 278 (532)
++|+|||||++++..||..|.+|||.+..... .|..+++.++.++++||+++|||+|+++||+.++..++++||++++.
T Consensus 183 k~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~A~~~~~~~~~~~~~g~IGi~~~~ 262 (497)
T PLN02998 183 SHWTTINEVNVFALGGYDQGITPPARCSPPFGLNCTKGNSSIEPYIAVHNMLLAHASATILYKQQYKYKQHGSVGISVYT 262 (497)
T ss_pred CEEEEccCcchhhhcchhhcccCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEeC
Confidence 99999999999999999999999996442110 36666666778999999999999999999998766688999999999
Q ss_pred ceeecCCCCHHHHHHHHHHHHHhccccccceecCCCCHHHHHHHhccCCCCCHHHHHHhhcCcceeEeecCcceEEecCC
Q 009535 279 LWFEPISSSTADKLAAERAQSFYMNWFLDPIIYGKYPAEMMNIVGSTLPKFSSRDKEKLKQGLDFIGINHYTSTYVQDCI 358 (532)
Q Consensus 279 ~~~~P~~~~~~D~~aa~~~~~~~~~~~~dp~~~G~yP~~~~~~lg~~lp~ft~ed~~~ikg~~DFlGiNyYt~~~v~~~~ 358 (532)
.+++|.+++++|++||++++++.++||+||+++|+||+.|++.+++++|.|+++|+++|++++||||||||++.+|+...
T Consensus 263 ~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~t~~d~~~i~~~~DFlGiNyYts~~v~~~~ 342 (497)
T PLN02998 263 YGAVPLTNSVKDKQATARVNDFYIGWILHPLVFGDYPETMKTNVGSRLPAFTEEESEQVKGAFDFVGVINYMALYVKDNS 342 (497)
T ss_pred CeeecCCCCHHHHHHHHHHHHHHhhhhhhHHhCCCcCHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEchhcCcccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997532
Q ss_pred CCCCCCCCCCCCCCCccccccccCCCCCCCCC-CCCCcccChHHHHHHHHHHHHHcCCCCEEEeecCccCCCCCCCCCCC
Q 009535 359 FSACKPGPGASKTEGFCLQNSQKHGVPLGEPT-TLFWLNVYPQGMWKIIKYIKERYKNTPMFITENGYGEICMPNSSTED 437 (532)
Q Consensus 359 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~w~~i~P~GL~~~L~~~~~rY~~~PI~ITENG~~~~~~~~~~~~g 437 (532)
.... +..+.+..+..... ...+..+ .++| +|+|+||+.+|+++++||++|||||||||+++.+ +|
T Consensus 343 ~~~~-~~~~~~~~~~~~~~------~~~~~~~~~~~w-~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~------~g 408 (497)
T PLN02998 343 SSLK-PNLQDFNTDIAVEM------TLVGNTSIENEY-ANTPWSLQQILLYVKETYGNPPVYILENGQMTPH------SS 408 (497)
T ss_pred CcCC-CCcccccccccccc------ccCCCcCCCCCC-EEChHHHHHHHHHHHHHcCCCCEEEeCCCCccCC------CC
Confidence 1100 00011111100000 0112223 3678 5999999999999999999889999999998754 46
Q ss_pred ccCchhhHHHHHHHHHHHHHHHHcCCCeEEEEeecccccccccCCCCCccceEEecCCC--CcccccchHHHHHHHHHhC
Q 009535 438 LLNDVKRVEYMASYLDALITAVRDGADVRGYFVWSLLDSFEWTYGYTARFGLHHVDFAT--LKRTPKLSATWYKHFIAKH 515 (532)
Q Consensus 438 ~i~D~~Ri~yl~~hl~~v~~Ai~dGv~V~GY~~WSl~Dn~EW~~Gy~~rfGL~~VD~~~--~~R~pK~S~~~y~~ii~~~ 515 (532)
+++|++||+||++||++|++||+|||||+|||+|||+|||||.+||++|||||+||++| ++|+||+|++||+++|+++
T Consensus 409 ~v~D~~Ri~Yl~~hl~~~~kAi~dGv~V~GY~~WSl~DnfEW~~Gy~~RfGLv~VD~~~~~~~R~pK~S~~wy~~ii~~~ 488 (497)
T PLN02998 409 SLVDTTRVKYLSSYIKAVLHSLRKGSDVKGYFQWSLMDVFELFGGYERSFGLLYVDFKDPSLKRSPKLSAHWYSSFLKGT 488 (497)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCCCCcceecccHHHHHHHHHhcc
Confidence 79999999999999999999999999999999999999999999999999999999994 6999999999999999987
No 4
>PLN02814 beta-glucosidase
Probab=100.00 E-value=9.3e-131 Score=1062.01 Aligned_cols=463 Identities=41% Similarity=0.786 Sum_probs=410.8
Q ss_pred CCCCCCCCCCCcEEeeecccccccCCcCCCCCccccccccccCCCCccCCCCCCccchhhhchHHHHHHHHHcCCCeeEe
Q 009535 38 QSLDPSPFPSNFLFGTSTSSYQVEGAYVSEGKGLSNWDVFTHTPGNIDDGSSGDVAVDHYHRYLEDIDLMESLGVNSYRF 117 (532)
Q Consensus 38 ~~~~~~~fP~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~~~~~~~~~~~~~a~d~y~ry~eDi~l~k~lG~~~~R~ 117 (532)
..+.+.+||++|+||+|||||||||++++||||+|+||.|.+. .++.++++||||||||+|||+|||+||+|+|||
T Consensus 21 ~~~~~~~fP~~FlwG~AtaA~QiEGa~~~~gkg~siwD~~~~~----~~~~~~~~a~D~Yhry~EDI~L~k~lG~~ayRf 96 (504)
T PLN02814 21 DAFTRNDFPEDFLFGAATSAYQWEGAVDEDGRTPSVWDTTSHC----YNGGNGDIASDGYHKYKEDVKLMAEMGLESFRF 96 (504)
T ss_pred cccccccCCCCCEEeeechhhhhcCCcCCCCCccchhheeeec----cCCCCCCccccHHHhhHHHHHHHHHcCCCEEEE
Confidence 3366788999999999999999999999999999999999872 234688999999999999999999999999999
Q ss_pred ccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecCCCCcHhHHHhhCCCCChhhHHHHHHHHHHHHHHhCC
Q 009535 118 SISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSFGD 197 (532)
Q Consensus 118 si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~fgd 197 (532)
||+||||+|+|+ |.+|++||+||+++|++|+++||+|+|||+|||+|+||+++||||.|++++++|++||+.|+++|||
T Consensus 97 SIsWsRI~P~G~-g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~~fgd 175 (504)
T PLN02814 97 SISWSRLIPNGR-GLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLPQSLEDEYGGWINRKIIEDFTAFADVCFREFGE 175 (504)
T ss_pred eccHhhcCcCCC-CCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhcCCcCChhHHHHHHHHHHHHHHHhCC
Confidence 999999999987 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEecCchhhhhcccccCCCCCCCCCCCC-CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhccCCCCCcEEEEe
Q 009535 198 RVKYWFTINEPNMQVTLSYRLGCHPPAHCSQPF-GNCSQGNSEEEPFIAAHNLILSHATAVDIYRTKYQKDQGGSIGIIL 276 (532)
Q Consensus 198 ~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~-~~~~~~~~~~~~~~~~hn~llAha~A~~~~r~~~~~~~~gkIGi~~ 276 (532)
+|++|+|||||++++..||..|.. ||.++... ..|.++++.++.++++||+++|||+||++||+.++..|+++||+++
T Consensus 176 rVk~WiT~NEP~~~~~~gy~~G~~-pg~~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~Av~~~~~~~~~~~~g~IGi~~ 254 (504)
T PLN02814 176 DVKLWTTINEATIFAIGSYGQGIR-YGHCSPNKFINCSTGNSCTETYIAGHNMLLAHASASNLYKLKYKSKQRGSIGLSI 254 (504)
T ss_pred cCCEEEeccccchhhhcccccCcC-CCCCCcccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEE
Confidence 999999999999999999999885 88654211 1465555667889999999999999999999987767899999999
Q ss_pred eCceeecCCCCHHHHHHHHHHHHHhccccccceecCCCCHHHHHHHhccCCCCCHHHHHHhhcCcceeEeecCcceEEec
Q 009535 277 NTLWFEPISSSTADKLAAERAQSFYMNWFLDPIIYGKYPAEMMNIVGSTLPKFSSRDKEKLKQGLDFIGINHYTSTYVQD 356 (532)
Q Consensus 277 ~~~~~~P~~~~~~D~~aa~~~~~~~~~~~~dp~~~G~yP~~~~~~lg~~lp~ft~ed~~~ikg~~DFlGiNyYt~~~v~~ 356 (532)
+..+++|++++|+|++||++++++.++||+||++.|+||+.|+++++.++|.|+++|+++|++++||||||||++.+|+.
T Consensus 255 ~~~~~~P~~~~~~D~~Aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~ikg~~DFiGiNyYt~~~v~~ 334 (504)
T PLN02814 255 FAFGLSPYTNSKDDEIATQRAKAFLYGWMLKPLVFGDYPDEMKRTLGSRLPVFSEEESEQVKGSSDFVGIIHYTTFYVTN 334 (504)
T ss_pred eCceeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEcccccceecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CCCCCC-CCCCCCCCCCCccccccccCCCCCCCCCCCCCcccChHHHHHHHHHHHHHcCCCCEEEeecCccCCCCCCCCC
Q 009535 357 CIFSAC-KPGPGASKTEGFCLQNSQKHGVPLGEPTTLFWLNVYPQGMWKIIKYIKERYKNTPMFITENGYGEICMPNSST 435 (532)
Q Consensus 357 ~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~w~~i~P~GL~~~L~~~~~rY~~~PI~ITENG~~~~~~~~~~~ 435 (532)
.+.... ++...++..+.+. ...+.++.+++|| +|+|+||+.+|+++++||+++||||||||++..+
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~gW-ei~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~------ 401 (504)
T PLN02814 335 RPAPSIFPSMNEGFFTDMGA------YIISAGNSSFFEF-DATPWGLEGILEHIKQSYNNPPIYILENGMPMKH------ 401 (504)
T ss_pred CCCCCcccccCCCccccccc------ccCCCCCcCCCCC-eECcHHHHHHHHHHHHhcCCCCEEEECCCCCCCC------
Confidence 321100 0000011000000 0112345678999 5999999999999999998889999999999754
Q ss_pred CCccCchhhHHHHHHHHHHHHHHHHcCCCeEEEEeecccccccccCCCCCccceEEecCCC--CcccccchHHHHHHHHH
Q 009535 436 EDLLNDVKRVEYMASYLDALITAVRDGADVRGYFVWSLLDSFEWTYGYTARFGLHHVDFAT--LKRTPKLSATWYKHFIA 513 (532)
Q Consensus 436 ~g~i~D~~Ri~yl~~hl~~v~~Ai~dGv~V~GY~~WSl~Dn~EW~~Gy~~rfGL~~VD~~~--~~R~pK~S~~~y~~ii~ 513 (532)
+|.++|++||+||++||++|++||+|||||+|||+|||+|||||.+||++|||||+||++| ++|+||+|++||+++|+
T Consensus 402 ~g~i~D~~Ri~Yl~~hl~~l~~Ai~dGv~V~GY~~WSllDnfEW~~Gy~~RfGLvyVD~~~~~~~R~pK~S~~wy~~~i~ 481 (504)
T PLN02814 402 DSTLQDTPRVEFIQAYIGAVLNAIKNGSDTRGYFVWSMIDLYELLGGYTTSFGMYYVNFSDPGRKRSPKLSASWYTGFLN 481 (504)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCCCCcceeeecHHHHHHHHHh
Confidence 4689999999999999999999999999999999999999999999999999999999995 59999999999999999
Q ss_pred hCCCCc
Q 009535 514 KHKLIK 519 (532)
Q Consensus 514 ~~~~~~ 519 (532)
++...+
T Consensus 482 ~~~~~~ 487 (504)
T PLN02814 482 GTIDVA 487 (504)
T ss_pred cCCChh
Confidence 876644
No 5
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.7e-128 Score=1004.88 Aligned_cols=447 Identities=41% Similarity=0.770 Sum_probs=405.4
Q ss_pred CCCCCCcEEeeecccccccCCcCCCCCcccccccccc--CCCCccCCCCCCccchhhhchHHHHHHHHHcCCCeeEeccc
Q 009535 43 SPFPSNFLFGTSTSSYQVEGAYVSEGKGLSNWDVFTH--TPGNIDDGSSGDVAVDHYHRYLEDIDLMESLGVNSYRFSIS 120 (532)
Q Consensus 43 ~~fP~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~--~~~~~~~~~~~~~a~d~y~ry~eDi~l~k~lG~~~~R~si~ 120 (532)
.+||++|+||+||||+|+|||+++||||+|+||.|.+ .|+++..+.++++||||||||+|||+|||+||+|+|||||+
T Consensus 2 ~~FPkdFlWG~AtAa~Q~EGa~~~dGkg~s~wD~~~~~~~~~~~~~~~~~~~a~d~YhrYkeDi~L~~emG~~~~R~SI~ 81 (460)
T COG2723 2 LKFPKDFLWGGATAAFQVEGAWNEDGKGPSDWDVWVHDEIPGRLVSGDPPEEASDFYHRYKEDIALAKEMGLNAFRTSIE 81 (460)
T ss_pred CCCCCCCeeecccccccccCCcCCCCCCCeeeeeeeccccCCcccCCCCCccccchhhhhHHHHHHHHHcCCCEEEeeee
Confidence 5799999999999999999999999999999999999 57888888999999999999999999999999999999999
Q ss_pred cceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecCCCCcHhHHHhhCCCCChhhHHHHHHHHHHHHHHhCCCce
Q 009535 121 WARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSFGDRVK 200 (532)
Q Consensus 121 W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~fgd~v~ 200 (532)
||||+|+++.+++|++||+||+++||+|+++||+|+|||+|||+|+||+++||||.|++++++|++||+.||+||||+|+
T Consensus 82 WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~Hfd~P~~L~~~ygGW~nR~~i~~F~~ya~~vf~~f~dkVk 161 (460)
T COG2723 82 WSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLYHFDLPLWLQKPYGGWENRETVDAFARYAATVFERFGDKVK 161 (460)
T ss_pred EEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecccCCcHHHhhccCCccCHHHHHHHHHHHHHHHHHhcCcce
Confidence 99999999734899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCchhhhhcccccCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhccCCCCCcEEEEeeCce
Q 009535 201 YWFTINEPNMQVTLSYRLGCHPPAHCSQPFGNCSQGNSEEEPFIAAHNLILSHATAVDIYRTKYQKDQGGSIGIILNTLW 280 (532)
Q Consensus 201 ~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAha~A~~~~r~~~~~~~~gkIGi~~~~~~ 280 (532)
+|+||||||+++..||+.|.+||+..+. +..+||+||+++|||+|++++|+.. ++.+||++++..+
T Consensus 162 ~W~TFNE~n~~~~~~y~~~~~~p~~~~~-----------~~~~qa~hh~~lA~A~avk~~~~~~---~~~kIG~~~~~~p 227 (460)
T COG2723 162 YWFTFNEPNVVVELGYLYGGHPPGIVDP-----------KAAYQVAHHMLLAHALAVKAIKKIN---PKGKVGIILNLTP 227 (460)
T ss_pred EEEEecchhhhhcccccccccCCCccCH-----------HHHHHHHHHHHHHHHHHHHHHHhhC---CcCceEEEeccCc
Confidence 9999999999999999999999987653 7889999999999999999999975 3449999999999
Q ss_pred eecCCCCHHHHHHHHHHHHHhccccccceecCCCCHHHHHHHhcc--CCCCCHHHHHHhhc-CcceeEeecCcceEEecC
Q 009535 281 FEPISSSTADKLAAERAQSFYMNWFLDPIIYGKYPAEMMNIVGST--LPKFSSRDKEKLKQ-GLDFIGINHYTSTYVQDC 357 (532)
Q Consensus 281 ~~P~~~~~~D~~aa~~~~~~~~~~~~dp~~~G~yP~~~~~~lg~~--lp~ft~ed~~~ikg-~~DFlGiNyYt~~~v~~~ 357 (532)
.||.+++|+|+.||+.++.+.+.+|+||+++|+||..+.+.+.+. +|.++++|+++|+. .+||||||||++..+...
T Consensus 228 ~YP~s~~p~dv~aA~~~~~~~n~~FlD~~~~G~yp~~~~~~~~~~~~~~~~~~~Dl~~lk~~~~DfiG~NYY~~s~v~~~ 307 (460)
T COG2723 228 AYPLSDKPEDVKAAENADRFHNRFFLDAQVKGEYPEYLEKELEENGILPEIEDGDLEILKENTVDFIGLNYYTPSRVKAA 307 (460)
T ss_pred CCCCCCCHHHHHHHHHHHHHhhhhhcchhhcCcCCHHHHHHHHhcCCCcccCcchHHHHhcCCCCeEEEeeeeeeeEeec
Confidence 999999999999999999999999999999999999999999765 79999999999986 489999999995555443
Q ss_pred CCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCcccChHHHHHHHHHHHHHcCCCCEEEeecCccCCCCCCCCCCC
Q 009535 358 IFSACKPGPGASKTEGFCLQNSQKHGVPLGEPTTLFWLNVYPQGMWKIIKYIKERYKNTPMFITENGYGEICMPNSSTED 437 (532)
Q Consensus 358 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~w~~i~P~GL~~~L~~~~~rY~~~PI~ITENG~~~~~~~~~~~~g 437 (532)
..... ..+..+. . .....+|..+.+++|| +|||+|||++|+++++||+ +||||||||++..++ .+.++
T Consensus 308 ~~~~~----~~~~~~~-~---~~~~~~p~~~~sdwGW-eI~P~GL~~~l~~~~~rY~-~p~fItENG~G~~d~--~~~~~ 375 (460)
T COG2723 308 EPRYV----SGYGPGG-F---FTSVPNPGLEVSDWGW-EIYPKGLYDILEKLYERYG-IPLFITENGLGVKDE--VDFDG 375 (460)
T ss_pred cCCcC----Ccccccc-c---ccccCCCCCcccCCCc-eeChHHHHHHHHHHHHHhC-CCeEEecCCCCcccc--cccCC
Confidence 22110 0111110 0 1111235556789999 5999999999999999997 999999999998886 33344
Q ss_pred ccCchhhHHHHHHHHHHHHHHHHcCCCeEEEEeecccccccccCCCCCccceEEecCCC-CcccccchHHHHHHHHHhCC
Q 009535 438 LLNDVKRVEYMASYLDALITAVRDGADVRGYFVWSLLDSFEWTYGYTARFGLHHVDFAT-LKRTPKLSATWYKHFIAKHK 516 (532)
Q Consensus 438 ~i~D~~Ri~yl~~hl~~v~~Ai~dGv~V~GY~~WSl~Dn~EW~~Gy~~rfGL~~VD~~~-~~R~pK~S~~~y~~ii~~~~ 516 (532)
|+|++||+||++||.+|++||+|||+|+||++||++||+||.+||++||||++||++| ++|+||+|++|||++|++||
T Consensus 376 -i~DdyRI~Yl~~Hl~~v~~AI~dGv~v~GY~~Ws~iD~~sw~~gy~kRYGli~VD~~~~~~R~~KkS~~WyK~vi~sng 454 (460)
T COG2723 376 -INDDYRIDYLKEHLKAVKKAIEDGVDVRGYFAWSLIDNYSWANGYKKRYGLVYVDYDTDLERTPKKSFYWYKEVIESNG 454 (460)
T ss_pred -cCchHHHHHHHHHHHHHHHHHHcCCCcccceecccccccchhhccccccccEEEcccccceeeecCceeeeHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999999999999 79999999999999999998
No 6
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=100.00 E-value=5.1e-127 Score=1030.31 Aligned_cols=452 Identities=35% Similarity=0.622 Sum_probs=395.8
Q ss_pred CCCCCCcEEeeecccccccCCcCCCCCccccccccccCCCCccCCCCCCccchhhhchHHHHHHHHHcCCCeeEeccccc
Q 009535 43 SPFPSNFLFGTSTSSYQVEGAYVSEGKGLSNWDVFTHTPGNIDDGSSGDVAVDHYHRYLEDIDLMESLGVNSYRFSISWA 122 (532)
Q Consensus 43 ~~fP~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~~~~~~~~~~~~~a~d~y~ry~eDi~l~k~lG~~~~R~si~W~ 122 (532)
.+||++|+||+|||||||||++++||||+|+||.|.+.++++ ++++||||||||+|||+|||+||+++|||||+||
T Consensus 3 ~~fP~~FlwG~Atsa~QiEG~~~~~Gkg~siwD~~~~~~~~~----~~~~a~d~Y~ry~eDi~L~~~lG~~~yRfSIsWs 78 (469)
T PRK13511 3 KTLPKDFIFGGATAAYQAEGATKTDGKGPVAWDKYLEENYWF----TPDPASDFYHRYPEDLKLAEEFGVNGIRISIAWS 78 (469)
T ss_pred CCCCCCCEEEeechHhhhcCCcCCCCCccchhhcccccCCCC----CCCcccchhhhhHHHHHHHHHhCCCEEEeeccHh
Confidence 469999999999999999999999999999999999866553 6899999999999999999999999999999999
Q ss_pred eeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecCCCCcHhHHHhhCCCCChhhHHHHHHHHHHHHHHhCCCceeE
Q 009535 123 RILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSFGDRVKYW 202 (532)
Q Consensus 123 ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~fgd~v~~w 202 (532)
||+|+++ |.+|++||+||+++|++|+++||+|+|||+|||+|+||+++ |||.|+++++.|++||+.||++||| |++|
T Consensus 79 RI~P~G~-g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~~~~fgd-Vk~W 155 (469)
T PRK13511 79 RIFPDGY-GEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPEALHSN-GDWLNRENIDHFVRYAEFCFEEFPE-VKYW 155 (469)
T ss_pred hcCcCCC-CCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEE
Confidence 9999987 89999999999999999999999999999999999999986 9999999999999999999999999 9999
Q ss_pred EEecCchhhhhcccccCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhccCCCCCcEEEEeeCceee
Q 009535 203 FTINEPNMQVTLSYRLGCHPPAHCSQPFGNCSQGNSEEEPFIAAHNLILSHATAVDIYRTKYQKDQGGSIGIILNTLWFE 282 (532)
Q Consensus 203 ~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAha~A~~~~r~~~~~~~~gkIGi~~~~~~~~ 282 (532)
+|||||++++..||..|.+|||++.. .++.++++||+++|||+||++||+.. |+++||++++..+++
T Consensus 156 ~T~NEP~~~~~~gy~~G~~~Pg~~~~----------~~~~~~~~hn~llAHa~A~~~~~~~~---~~g~IGi~~~~~~~~ 222 (469)
T PRK13511 156 TTFNEIGPIGDGQYLVGKFPPGIKYD----------LAKVFQSHHNMMVAHARAVKLFKDKG---YKGEIGVVHALPTKY 222 (469)
T ss_pred EEccchhhhhhcchhhcccCCCCCcc----------HHHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEecCceEe
Confidence 99999999999999999999997531 14689999999999999999999863 789999999999999
Q ss_pred cCC-CCHHHHHHHHHHHHHhccccccceecCCCCHHHHHHHhc------cCCCCCHHHHHHhhc---CcceeEeecCcce
Q 009535 283 PIS-SSTADKLAAERAQSFYMNWFLDPIIYGKYPAEMMNIVGS------TLPKFSSRDKEKLKQ---GLDFIGINHYTST 352 (532)
Q Consensus 283 P~~-~~~~D~~aa~~~~~~~~~~~~dp~~~G~yP~~~~~~lg~------~lp~ft~ed~~~ikg---~~DFlGiNyYt~~ 352 (532)
|.+ ++++|++||++++++.++||+||+++|+||+.|++.++. ..+.||++|++++++ ++||||||||++.
T Consensus 223 P~~~~~~~d~~aa~~~~~~~~~~f~dp~~~G~Yp~~~~~~~~~~~~~~~~~l~~t~~d~~~ik~~~~~~DFiGiNyYt~~ 302 (469)
T PRK13511 223 PIDPDNPEDVRAAELEDIIHNKFILDATYLGYYSEETMEGVNHILEANGGSLDIRDEDFEILKAAKDLNDFLGINYYMSD 302 (469)
T ss_pred eCCCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHHhhhhcCCCCCCCHHHHHHHhcCCCCCCEEEechhhcc
Confidence 999 899999999999999999999999999999999998742 124799999999974 5899999999999
Q ss_pred EEecCCCCCCCC-CCCCCCCCCc--cccccccCCCCCCCCCCCCCcccChHHHHHHHHHHHHHcCC-CCEEEeecCccCC
Q 009535 353 YVQDCIFSACKP-GPGASKTEGF--CLQNSQKHGVPLGEPTTLFWLNVYPQGMWKIIKYIKERYKN-TPMFITENGYGEI 428 (532)
Q Consensus 353 ~v~~~~~~~~~~-~~~~~~~d~~--~~~~~~~~~~~~~~~~~~~w~~i~P~GL~~~L~~~~~rY~~-~PI~ITENG~~~~ 428 (532)
+|+......... .......... .........++..+.+++|| +|+|+||+.+|++++++|++ +||||||||++..
T Consensus 303 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw-~i~P~Gl~~~l~~~~~~Y~~~~pi~ITENG~~~~ 381 (469)
T PRK13511 303 WMRAYDGETEIIHNGTGEKGSSKYQLKGVGERVKPPDVPTTDWDW-IIYPQGLYDQLMRIKKDYPNYKKIYITENGLGYK 381 (469)
T ss_pred eeecCCCccccccCCCCccccccccccCccccccCCCCCcCCCCC-eECcHHHHHHHHHHHHHcCCCCCEEEecCCcCCC
Confidence 997532110000 0000000000 00000000112224567899 59999999999999999987 6899999999977
Q ss_pred CCCCCCCCCccCchhhHHHHHHHHHHHHHHHHcCCCeEEEEeecccccccccCCCCCccceEEecCCCCcccccchHHHH
Q 009535 429 CMPNSSTEDLLNDVKRVEYMASYLDALITAVRDGADVRGYFVWSLLDSFEWTYGYTARFGLHHVDFATLKRTPKLSATWY 508 (532)
Q Consensus 429 ~~~~~~~~g~i~D~~Ri~yl~~hl~~v~~Ai~dGv~V~GY~~WSl~Dn~EW~~Gy~~rfGL~~VD~~~~~R~pK~S~~~y 508 (532)
++ .+.+++++|++||+||++||++|++||++||||+|||+|||+|||||..||++|||||+||++|++|+||+|++||
T Consensus 382 d~--~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~WSl~DnfEW~~Gy~~RfGl~~VD~~~~~R~pK~S~~wy 459 (469)
T PRK13511 382 DE--FVDGKTVDDDKRIDYVKQHLEVISDAISDGANVKGYFIWSLMDVFSWSNGYEKRYGLFYVDFETQERYPKKSAYWY 459 (469)
T ss_pred CC--cCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeecccccccchhcCccCccceEEECCCcCccccccHHHHH
Confidence 64 3446789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCC
Q 009535 509 KHFIAKHKL 517 (532)
Q Consensus 509 ~~ii~~~~~ 517 (532)
+++|++|++
T Consensus 460 ~~~i~~~~~ 468 (469)
T PRK13511 460 KKLAETKVI 468 (469)
T ss_pred HHHHHhCCC
Confidence 999999876
No 7
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=100.00 E-value=2.4e-126 Score=1022.94 Aligned_cols=447 Identities=35% Similarity=0.618 Sum_probs=394.5
Q ss_pred CCCCCCcEEeeecccccccCCcCCCCCccccccccccCCCCccCCCCCCccchhhhchHHHHHHHHHcCCCeeEeccccc
Q 009535 43 SPFPSNFLFGTSTSSYQVEGAYVSEGKGLSNWDVFTHTPGNIDDGSSGDVAVDHYHRYLEDIDLMESLGVNSYRFSISWA 122 (532)
Q Consensus 43 ~~fP~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~~~~~~~~~~~~~a~d~y~ry~eDi~l~k~lG~~~~R~si~W~ 122 (532)
.+||++|+||+|||||||||+++++|||+|+||.+.+.+++ .++++||||||||+|||+|||+||+++|||||+||
T Consensus 2 ~~fP~~FlwG~AtsA~QvEG~~~~~Gkg~siwD~~~~~~~~----~~~~~a~d~yhry~eDi~L~~~lG~~~yRfSIsWs 77 (467)
T TIGR01233 2 KTLPKDFIFGGATAAYQAEGATHTDGKGPVAWDKYLEDNYW----YTAEPASDFYHKYPVDLELAEEYGVNGIRISIAWS 77 (467)
T ss_pred CCCCCCCEEeeechhhhcCCCcCCCCCcCchhhccccCCCC----CCCCccCchhhhHHHHHHHHHHcCCCEEEEecchh
Confidence 46999999999999999999999999999999999875544 25789999999999999999999999999999999
Q ss_pred eeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecCCCCcHhHHHhhCCCCChhhHHHHHHHHHHHHHHhCCCceeE
Q 009535 123 RILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSFGDRVKYW 202 (532)
Q Consensus 123 ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~fgd~v~~w 202 (532)
||+|++. |.+|++||+||+++|++|+++||+|||||+|||+|+||+++ |||+|++++++|++||+.||++||+ |++|
T Consensus 78 RI~P~g~-~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~f~~fgd-Vk~W 154 (467)
T TIGR01233 78 RIFPTGY-GEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPEALHSN-GDFLNRENIEHFIDYAAFCFEEFPE-VNYW 154 (467)
T ss_pred hccCCCC-CCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEE
Confidence 9999987 89999999999999999999999999999999999999986 9999999999999999999999998 9999
Q ss_pred EEecCchhhhhcccccCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhccCCCCCcEEEEeeCceee
Q 009535 203 FTINEPNMQVTLSYRLGCHPPAHCSQPFGNCSQGNSEEEPFIAAHNLILSHATAVDIYRTKYQKDQGGSIGIILNTLWFE 282 (532)
Q Consensus 203 ~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAha~A~~~~r~~~~~~~~gkIGi~~~~~~~~ 282 (532)
+|||||++++..||+.|.+|||.+.. .++.++++||+++|||+||++||++. ++++||++++..+++
T Consensus 155 iT~NEP~~~~~~gy~~G~~~Pg~~~~----------~~~~~~a~hn~l~AHa~A~~~~~~~~---~~~~IGi~~~~~~~~ 221 (467)
T TIGR01233 155 TTFNEIGPIGDGQYLVGKFPPGIKYD----------LAKVFQSHHNMMVSHARAVKLYKDKG---YKGEIGVVHALPTKY 221 (467)
T ss_pred EEecchhhhhhccchhcccCCCccch----------hHHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEecCceeE
Confidence 99999999999999999999996331 14689999999999999999999863 789999999999999
Q ss_pred cCC-CCHHHHHHHHHHHHHhccccccceecCCCCHHHHHHHhcc------CCCCCHHHHHHh---hcCcceeEeecCcce
Q 009535 283 PIS-SSTADKLAAERAQSFYMNWFLDPIIYGKYPAEMMNIVGST------LPKFSSRDKEKL---KQGLDFIGINHYTST 352 (532)
Q Consensus 283 P~~-~~~~D~~aa~~~~~~~~~~~~dp~~~G~yP~~~~~~lg~~------lp~ft~ed~~~i---kg~~DFlGiNyYt~~ 352 (532)
|++ ++++|++||++++++.++||+||+++|+||+.|++.++.+ +|.+|++|+++| ++++||||||||++.
T Consensus 222 P~~~~~~~D~~aA~~~~~~~~~~f~d~~~~G~Yp~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~DFlGinyYt~~ 301 (467)
T TIGR01233 222 PYDPENPADVRAAELEDIIHNKFILDATYLGHYSDKTMEGVNHILAENGGELDLRDEDFQALDAAKDLNDFLGINYYMSD 301 (467)
T ss_pred ECCCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHhhhhccCCCCCCCHHHHHHHhccCCCCCEEEEccccce
Confidence 998 8999999999999999999999999999999999988632 377999999999 488999999999999
Q ss_pred EEecCCCCCC---C-CCCCC--CCCCCccccccccCCCC-CCCCCCCCCcccChHHHHHHHHHHHHHcCC-CCEEEeecC
Q 009535 353 YVQDCIFSAC---K-PGPGA--SKTEGFCLQNSQKHGVP-LGEPTTLFWLNVYPQGMWKIIKYIKERYKN-TPMFITENG 424 (532)
Q Consensus 353 ~v~~~~~~~~---~-~~~~~--~~~d~~~~~~~~~~~~~-~~~~~~~~w~~i~P~GL~~~L~~~~~rY~~-~PI~ITENG 424 (532)
+|+....... + ..... ........ ....+ ..+.+++|| +|+|+||+.+|+++++||++ |||||||||
T Consensus 302 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~t~~gw-~i~P~Gl~~~L~~~~~~Y~~~ppi~ItENG 376 (467)
T TIGR01233 302 WMQAFDGETEIIHNGKGEKGSSKYQIKGVG----RRVAPDYVPRTDWDW-IIYPEGLYDQIMRVKNDYPNYKKIYITENG 376 (467)
T ss_pred eeccCCCccccccCCccccCcccccCCCcc----cccCCCCCCcCCCCC-eeChHHHHHHHHHHHHHcCCCCCEEEeCCC
Confidence 9975321100 0 00000 00000000 00011 124577899 49999999999999999986 679999999
Q ss_pred ccCCCCCCCCCCCccCchhhHHHHHHHHHHHHHHHHcCCCeEEEEeecccccccccCCCCCccceEEecCCCCcccccch
Q 009535 425 YGEICMPNSSTEDLLNDVKRVEYMASYLDALITAVRDGADVRGYFVWSLLDSFEWTYGYTARFGLHHVDFATLKRTPKLS 504 (532)
Q Consensus 425 ~~~~~~~~~~~~g~i~D~~Ri~yl~~hl~~v~~Ai~dGv~V~GY~~WSl~Dn~EW~~Gy~~rfGL~~VD~~~~~R~pK~S 504 (532)
++..++ . .+|.++|++||+||++||++|++||+|||||+|||+|||+|||||..||++|||||+||++|++|+||+|
T Consensus 377 ~~~~d~--~-~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~v~GY~~WSl~Dn~Ew~~Gy~~RfGLv~VD~~t~~R~~K~S 453 (467)
T TIGR01233 377 LGYKDE--F-VDNTVYDDGRIDYVKQHLEVLSDAIADGANVKGYFIWSLMDVFSWSNGYEKRYGLFYVDFDTQERYPKKS 453 (467)
T ss_pred CCCCCC--C-CCCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCCCccccccH
Confidence 998764 2 2578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCC
Q 009535 505 ATWYKHFIAKHKL 517 (532)
Q Consensus 505 ~~~y~~ii~~~~~ 517 (532)
++|||++|++|.+
T Consensus 454 ~~wy~~ii~~~~~ 466 (467)
T TIGR01233 454 AHWYKKLAETQVI 466 (467)
T ss_pred HHHHHHHHHhcCC
Confidence 9999999999876
No 8
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=5.3e-126 Score=1022.07 Aligned_cols=449 Identities=31% Similarity=0.521 Sum_probs=394.5
Q ss_pred CCCCCCCCcEEeeecccccccCCcCCCCCccccccccccCCCCcc--C----------C--CCCCccchhhhchHHHHHH
Q 009535 41 DPSPFPSNFLFGTSTSSYQVEGAYVSEGKGLSNWDVFTHTPGNID--D----------G--SSGDVAVDHYHRYLEDIDL 106 (532)
Q Consensus 41 ~~~~fP~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~~~~~~--~----------~--~~~~~a~d~y~ry~eDi~l 106 (532)
+..+||++|+||+|||||||||++++||||+|+||.|.+.++++. + + .++++||||||||+|||+|
T Consensus 2 ~~~~fP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~d~Yhry~eDi~L 81 (478)
T PRK09593 2 EKMPFPKGFLWGGATAANQCEGAYNVDGRGLANVDVVPIGEDRFPIITGEKKMFDFEEGYFYPAKEAIDMYHHYKEDIAL 81 (478)
T ss_pred ccccCCCCCEEeeechHHHhCCCcCCCCCccchhhccccCcCcccccccccccccccccccCCCCcccchHHhhHHHHHH
Confidence 346799999999999999999999999999999999988655441 1 1 1578999999999999999
Q ss_pred HHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecCCCCcHhHHHhhCCCCChhhHHHHHH
Q 009535 107 MESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGY 186 (532)
Q Consensus 107 ~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ 186 (532)
||+||+|+|||||+||||+|+|..|.+|++||+||+++|++|+++||+|+|||+|||+|+||+++||||+|++++++|++
T Consensus 82 m~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~~L~~~~GGW~n~~~v~~F~~ 161 (478)
T PRK09593 82 FAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPMHLIEEYGGWRNRKMVGFYER 161 (478)
T ss_pred HHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCHHHHhhcCCCCChHHHHHHHH
Confidence 99999999999999999999985367999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCceeEEEecCchhhhhcccc-cCC-CCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhc
Q 009535 187 FADICFKSFGDRVKYWFTINEPNMQVTLSYR-LGC-HPPAHCSQPFGNCSQGNSEEEPFIAAHNLILSHATAVDIYRTKY 264 (532)
Q Consensus 187 ya~~~~~~fgd~v~~w~t~NEp~~~~~~gy~-~g~-~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAha~A~~~~r~~~ 264 (532)
||+.||++|||+|++|+|||||++++..||. .|. +|||... ..+.++|+||+++|||+|+++||+..
T Consensus 162 YA~~~~~~fgdrVk~WiT~NEP~~~~~~~~~~~g~~~~~g~~~-----------~~~~~~a~h~~llAHa~A~~~~~~~~ 230 (478)
T PRK09593 162 LCRTLFTRYKGLVKYWLTFNEINMILHAPFMGAGLYFEEGENK-----------EQVKYQAAHHELVASAIATKIAHEVD 230 (478)
T ss_pred HHHHHHHHhcCcCCEEEeecchhhhhcccccccCcccCCCCch-----------hhhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999888876 444 3676422 25689999999999999999999853
Q ss_pred cCCCCCcEEEEeeCceeecCCCCHHHHHHHHHHHHHhccccccceecCCCCHHHHHHHhc--cCCCCCHHHHHHhh-cCc
Q 009535 265 QKDQGGSIGIILNTLWFEPISSSTADKLAAERAQSFYMNWFLDPIIYGKYPAEMMNIVGS--TLPKFSSRDKEKLK-QGL 341 (532)
Q Consensus 265 ~~~~~gkIGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~~~dp~~~G~yP~~~~~~lg~--~lp~ft~ed~~~ik-g~~ 341 (532)
|+++||++++..+++|.+++++|++||++++ +.++||+||+++|+||+.|++++++ .+|.||++|+++|+ +++
T Consensus 231 ---~~g~VGi~~~~~~~~P~~~~~~D~~aa~~~~-~~~~~fld~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~ik~g~~ 306 (478)
T PRK09593 231 ---PENKVGCMLAAGQYYPNTCHPEDVWAAMKED-RENYFFIDVQARGEYPNYAKKRFEREGITIEMTEEDLELLKENTV 306 (478)
T ss_pred ---CCCeEEEEEeCCeeEeCCCCHHHHHHHHHHH-HHhhhhhhhhhCCCccHHHHHHHHhcCCCCCCCHHHHHHHhcCCC
Confidence 7899999999999999999999999999887 5578999999999999999999976 46889999999996 899
Q ss_pred ceeEeecCcceEEecCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCcccChHHHHHHHHHHHHHcCCCCEEEe
Q 009535 342 DFIGINHYTSTYVQDCIFSACKPGPGASKTEGFCLQNSQKHGVPLGEPTTLFWLNVYPQGMWKIIKYIKERYKNTPMFIT 421 (532)
Q Consensus 342 DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~w~~i~P~GL~~~L~~~~~rY~~~PI~IT 421 (532)
||||||||++.+|+..+.... ..... ... ... ++..+.+++|| +|+|+||+.+|+++++||+ .|||||
T Consensus 307 DFlGiNyYt~~~v~~~~~~~~-----~~~~~-~~~--~~~--~p~~~~~~~gw-~i~P~Gl~~~l~~~~~~Y~-~Pi~It 374 (478)
T PRK09593 307 DFISFSYYSSRVASGDPKVNE-----KTAGN-IFA--SLK--NPYLKASEWGW-QIDPLGLRITLNTIWDRYQ-KPMFIV 374 (478)
T ss_pred CEEEEecccCcccccCCCCCC-----CCCCC-ccc--ccc--CCCcccCCCCC-EECHHHHHHHHHHHHHHcC-CCEEEE
Confidence 999999999999975321000 00000 000 001 24445678999 5999999999999999997 489999
Q ss_pred ecCccCCCCCCCCCCCccCchhhHHHHHHHHHHHHHHHH-cCCCeEEEEeecccccccccCC-CCCccceEEecCC----
Q 009535 422 ENGYGEICMPNSSTEDLLNDVKRVEYMASYLDALITAVR-DGADVRGYFVWSLLDSFEWTYG-YTARFGLHHVDFA---- 495 (532)
Q Consensus 422 ENG~~~~~~~~~~~~g~i~D~~Ri~yl~~hl~~v~~Ai~-dGv~V~GY~~WSl~Dn~EW~~G-y~~rfGL~~VD~~---- 495 (532)
|||++..++ .+.+|+++|++||+||++||++|++||+ |||||+|||+|||+|||||..| |++|||||+||++
T Consensus 375 ENG~~~~d~--~~~~g~i~D~~Ri~yl~~hl~~~~~Ai~~dGv~v~GY~~WSl~Dn~EW~~G~y~~RfGl~~VD~~~~~~ 452 (478)
T PRK09593 375 ENGLGAVDK--PDENGYVEDDYRIDYLAAHIKAMRDAINEDGVELLGYTTWGCIDLVSAGTGEMKKRYGFIYVDRDNEGK 452 (478)
T ss_pred cCCCCCCCC--CCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchHhhcccCCCccCeeceEEECCCCCCC
Confidence 999998764 3467899999999999999999999995 9999999999999999999999 9999999999998
Q ss_pred -CCcccccchHHHHHHHHHhCCCC
Q 009535 496 -TLKRTPKLSATWYKHFIAKHKLI 518 (532)
Q Consensus 496 -~~~R~pK~S~~~y~~ii~~~~~~ 518 (532)
|++|+||+|++||+++|++|+..
T Consensus 453 ~~~~R~pK~S~~wy~~ii~~~~~~ 476 (478)
T PRK09593 453 GTLKRSKKKSFDWYKKVIASNGED 476 (478)
T ss_pred cccceecccHHHHHHHHHHhCCcC
Confidence 57999999999999999998873
No 9
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=100.00 E-value=2e-127 Score=1033.48 Aligned_cols=449 Identities=50% Similarity=0.907 Sum_probs=392.1
Q ss_pred CCCCCCcEEeeecccccccCCcCCCCCccccccccccCCCCccCCCCCCccchhhhchHHHHHHHHHcCCCeeEeccccc
Q 009535 43 SPFPSNFLFGTSTSSYQVEGAYVSEGKGLSNWDVFTHTPGNIDDGSSGDVAVDHYHRYLEDIDLMESLGVNSYRFSISWA 122 (532)
Q Consensus 43 ~~fP~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~~~~~~~~~~~~~a~d~y~ry~eDi~l~k~lG~~~~R~si~W~ 122 (532)
.+||++|+||+|||||||||++++||||+|+||.|++.++++.++.++++||||||||+|||+|||+||+++|||||+|+
T Consensus 3 ~~fp~~F~wG~atsa~Q~EG~~~~dGkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~lg~~~yRfsi~W~ 82 (455)
T PF00232_consen 3 KKFPEDFLWGVATSAYQIEGAWNEDGKGPSIWDTFCHEPGKVEDGSTGDVACDHYHRYKEDIALMKELGVNAYRFSISWS 82 (455)
T ss_dssp GGS-TT-EEEEE--HHHHSSSTTSTTSTTBHHHHHHHSTTSSTTSSSSSSTTGHHHHHHHHHHHHHHHT-SEEEEE--HH
T ss_pred CCCCCCCeEEEeceeccccceecCCCCCcccccccccccceeeccccCcccccchhhhhHHHHHHHhhccceeeeecchh
Confidence 57999999999999999999999999999999999998898888999999999999999999999999999999999999
Q ss_pred eeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecCCCCcHhHHHhhCCCCChhhHHHHHHHHHHHHHHhCCCceeE
Q 009535 123 RILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSFGDRVKYW 202 (532)
Q Consensus 123 ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~fgd~v~~w 202 (532)
||+|+|..|.+|+++|++|+++|++|+++||+|||||+|||+|+||++ +|||+|+++++.|++||+.|+++|||+|++|
T Consensus 83 Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~-~ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~w 161 (455)
T PF00232_consen 83 RIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLED-YGGWLNRETVDWFARYAEFVFERFGDRVKYW 161 (455)
T ss_dssp HHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHH-HTGGGSTHHHHHHHHHHHHHHHHHTTTBSEE
T ss_pred heeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceee-cccccCHHHHHHHHHHHHHHHHHhCCCcceE
Confidence 999998339999999999999999999999999999999999999998 7999999999999999999999999999999
Q ss_pred EEecCchhhhhcccccCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhccCCCCCcEEEEeeCceee
Q 009535 203 FTINEPNMQVTLSYRLGCHPPAHCSQPFGNCSQGNSEEEPFIAAHNLILSHATAVDIYRTKYQKDQGGSIGIILNTLWFE 282 (532)
Q Consensus 203 ~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAha~A~~~~r~~~~~~~~gkIGi~~~~~~~~ 282 (532)
+|||||++++..||+.|.+|||..+ .++.++++||+++|||+|+++||+++ ++++||++++..+++
T Consensus 162 ~T~NEp~~~~~~~y~~g~~~p~~~~-----------~~~~~~~~h~~l~AHa~A~~~~~~~~---~~~~IGi~~~~~~~~ 227 (455)
T PF00232_consen 162 ITFNEPNVFALLGYLYGGFPPGRDS-----------LKAFYQAAHNLLLAHAKAVKAIKEKY---PDGKIGIALNFSPFY 227 (455)
T ss_dssp EEEETHHHHHHHHHTSSSSTTCSST-----------HHHHHHHHHHHHHHHHHHHHHHHHHT---CTSEEEEEEEEEEEE
T ss_pred Eeccccceeeccccccccccccccc-----------cchhhHHHhhHHHHHHHHHHHHhhcc---cceEEeccccccccC
Confidence 9999999999999999999999654 37889999999999999999999986 799999999999999
Q ss_pred cCCCCHHHH-HHHHHHHHHhccccccceecCCCCHHHHHHHhcc--CCCCCHHHHHHhhcCcceeEeecCcceEEecCCC
Q 009535 283 PISSSTADK-LAAERAQSFYMNWFLDPIIYGKYPAEMMNIVGST--LPKFSSRDKEKLKQGLDFIGINHYTSTYVQDCIF 359 (532)
Q Consensus 283 P~~~~~~D~-~aa~~~~~~~~~~~~dp~~~G~yP~~~~~~lg~~--lp~ft~ed~~~ikg~~DFlGiNyYt~~~v~~~~~ 359 (532)
|.+++++|. +||++.+++.++||+||++.|+||..|+++++++ +|.||++|++.|++++||||||||++..|+..+.
T Consensus 228 P~~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~~~~~~~~lp~ft~ed~~~ikg~~DFlGiNYYt~~~v~~~~~ 307 (455)
T PF00232_consen 228 PLSPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEMKEYLGERGILPEFTEEDKELIKGSIDFLGINYYTSRYVRADPN 307 (455)
T ss_dssp ESSSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHHHHHHGGGTSSTTSGHHHHHHHTTTTSEEEEEESEEEEEEESSS
T ss_pred CCCccchhhHHHHHHHHHHhhcccccCchhhcCChHHhhccccccccccccchhhhcccccchhhhhccccceeeccCcc
Confidence 999987766 8899999999999999999999999999999988 9999999999999999999999999999998763
Q ss_pred CCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCcccChHHHHHHHHHHHHHcCCCCEEEeecCccCCCCCCCCCCCcc
Q 009535 360 SACKPGPGASKTEGFCLQNSQKHGVPLGEPTTLFWLNVYPQGMWKIIKYIKERYKNTPMFITENGYGEICMPNSSTEDLL 439 (532)
Q Consensus 360 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~w~~i~P~GL~~~L~~~~~rY~~~PI~ITENG~~~~~~~~~~~~g~i 439 (532)
... .+......... ...++.++.++++|+ ++|+||+++|++++++|+++||||||||++..++. + ++++
T Consensus 308 ~~~---~~~~~~~~~~~----~~~~~~~~~t~~gw~-i~P~Gl~~~L~~l~~~Y~~~pI~ITENG~~~~~~~--~-~~~v 376 (455)
T PF00232_consen 308 PSS---PPSYDSDAPFG----QPYNPGGPTTDWGWE-IYPEGLRDVLRYLKDRYGNPPIYITENGIGDPDEV--D-DGKV 376 (455)
T ss_dssp STS---STTHEEEESEE----EECETSSEBCTTSTB-BETHHHHHHHHHHHHHHTSSEEEEEEE---EETTC--T-TSHB
T ss_pred ccc---cccccCCcccc----ccccccccccccCcc-cccchHhhhhhhhccccCCCcEEEecccccccccc--c-ccCc
Confidence 221 00000000000 001234567889995 99999999999999999999999999999988752 2 2899
Q ss_pred CchhhHHHHHHHHHHHHHHHHcCCCeEEEEeecccccccccCCCCCccceEEec-CCCCcccccchHHHHHHHHHhCCC
Q 009535 440 NDVKRVEYMASYLDALITAVRDGADVRGYFVWSLLDSFEWTYGYTARFGLHHVD-FATLKRTPKLSATWYKHFIAKHKL 517 (532)
Q Consensus 440 ~D~~Ri~yl~~hl~~v~~Ai~dGv~V~GY~~WSl~Dn~EW~~Gy~~rfGL~~VD-~~~~~R~pK~S~~~y~~ii~~~~~ 517 (532)
+|+.||+||++||.+|++||+|||||+||++|||+|||||.+||++||||++|| ++|++|+||+|++||+++|++||+
T Consensus 377 ~D~~Ri~yl~~hl~~v~~Ai~dGv~V~GY~~WSl~Dn~Ew~~Gy~~rfGl~~VD~~~~~~R~pK~S~~~y~~~i~~ng~ 455 (455)
T PF00232_consen 377 DDDYRIDYLQDHLNQVLKAIEDGVNVRGYFAWSLLDNFEWAEGYKKRFGLVYVDFFDTLKRTPKKSAYWYKDFIRSNGF 455 (455)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTT-EEEEEEEETSB---BGGGGGGSE--SEEEETTTTTEEEEBHHHHHHHHHHHHTEE
T ss_pred CcHHHHHHHHHHHHHHHhhhccCCCeeeEeeeccccccccccCccCccCceEEcCCCCcCeeeccHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999999 779999999999999999999975
No 10
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=3.1e-125 Score=1015.60 Aligned_cols=446 Identities=31% Similarity=0.547 Sum_probs=388.6
Q ss_pred CCCCCcEEeeecccccccCCcCCCCCccccccccc---c-CCCCcc----CCC--CCCccchhhhchHHHHHHHHHcCCC
Q 009535 44 PFPSNFLFGTSTSSYQVEGAYVSEGKGLSNWDVFT---H-TPGNID----DGS--SGDVAVDHYHRYLEDIDLMESLGVN 113 (532)
Q Consensus 44 ~fP~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~---~-~~~~~~----~~~--~~~~a~d~y~ry~eDi~l~k~lG~~ 113 (532)
+||++|+||+|||||||||++++||||+|+||.|. + .++++. ++. ++++||||||||+|||+|||+||+|
T Consensus 3 ~fP~~FlwG~AtsA~QiEGa~~~~gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~a~D~Yhry~eDi~Lm~~lG~~ 82 (476)
T PRK09589 3 GFKKGFLWGGAVAAHQLEGGWNEGGKGISVADVMTAGAHGVPREITEGVIEGKNYPNHEAIDFYHRYKEDIALFAEMGFK 82 (476)
T ss_pred CCCCCCEEeeechHhhhcCCcCCCCCCCchhcccccccccCccccccCccCCCcCCCcccccHHHhhHHHHHHHHHcCCC
Confidence 59999999999999999999999999999999998 3 344442 222 5789999999999999999999999
Q ss_pred eeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecCCCCcHhHHHhhCCCCChhhHHHHHHHHHHHHH
Q 009535 114 SYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFK 193 (532)
Q Consensus 114 ~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~ 193 (532)
+|||||+||||+|+|..|.+|++||+||+++|++|+++||+|+|||+|||+|+||+++||||+|++++++|++||+.||+
T Consensus 83 ~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~ 162 (476)
T PRK09589 83 CFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPYHLVTEYGGWRNRKLIDFFVRFAEVVFT 162 (476)
T ss_pred EEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCHHHHHhcCCcCChHHHHHHHHHHHHHHH
Confidence 99999999999999853579999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCceeEEEecCchhhhhc-----ccc-cCC-CCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhccC
Q 009535 194 SFGDRVKYWFTINEPNMQVTL-----SYR-LGC-HPPAHCSQPFGNCSQGNSEEEPFIAAHNLILSHATAVDIYRTKYQK 266 (532)
Q Consensus 194 ~fgd~v~~w~t~NEp~~~~~~-----gy~-~g~-~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAha~A~~~~r~~~~~ 266 (532)
+|||+|++|+|||||++++.. ||. .|. +|||... ....++++||+++|||+|++++|+..
T Consensus 163 ~fgdrVk~WiT~NEp~~~~~~~~~~~~~~~~g~~~~pg~~~-----------~~~~~~~~h~~llAha~A~~~~~~~~-- 229 (476)
T PRK09589 163 RYKDKVKYWMTFNEINNQANFSEDFAPFTNSGILYSPGEDR-----------EQIMYQAAHYELVASALAVKTGHEIN-- 229 (476)
T ss_pred HhcCCCCEEEEecchhhhhccccccCCccccccccCCCCch-----------hHHHHHHHHHHHHHHHHHHHHHHHhC--
Confidence 999999999999999998766 343 333 3555321 24579999999999999999999864
Q ss_pred CCCCcEEEEeeCceeecCCCCHHHHHHHHHHHHHhccccccceecCCCCHHHHHHHhcc--CCCCCHHHHHHh-hcCcce
Q 009535 267 DQGGSIGIILNTLWFEPISSSTADKLAAERAQSFYMNWFLDPIIYGKYPAEMMNIVGST--LPKFSSRDKEKL-KQGLDF 343 (532)
Q Consensus 267 ~~~gkIGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~~~dp~~~G~yP~~~~~~lg~~--lp~ft~ed~~~i-kg~~DF 343 (532)
++++||++++..+++|.+++|+|++||++++.+ +.||+||+++|+||+.|++.++++ .|.||++|+++| ++++||
T Consensus 230 -~~~~iG~~~~~~~~~P~~~~~~d~~aa~~~~~~-~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~t~~d~~~l~~g~~DF 307 (476)
T PRK09589 230 -PDFQIGCMIAMCPIYPLTCAPNDMMMATKAMHR-RYWFTDVHVRGYYPQHILNYFARKGFNLDITPEDNAILAEGCVDY 307 (476)
T ss_pred -CCCcEEEEEeCCeeeeCCCCHHHHHHHHHHHHh-ccceecceeCCCCcHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCE
Confidence 688999999999999999999999999998854 679999999999999999999874 478999999988 589999
Q ss_pred eEeecCcceEEecCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCcccChHHHHHHHHHHHHHcCCCCEEEeec
Q 009535 344 IGINHYTSTYVQDCIFSACKPGPGASKTEGFCLQNSQKHGVPLGEPTTLFWLNVYPQGMWKIIKYIKERYKNTPMFITEN 423 (532)
Q Consensus 344 lGiNyYt~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~w~~i~P~GL~~~L~~~~~rY~~~PI~ITEN 423 (532)
||||||++.+|+...... ......+ ... .. ++..+.+++|| +|+|+||+.+|+++++||+ .|||||||
T Consensus 308 lGiNyYts~~v~~~~~~~----~~~~~~~--~~~--~~--~~~~~~~~~gw-~i~P~Gl~~~L~~~~~~Y~-~Pi~ItEN 375 (476)
T PRK09589 308 IGFSYYMSFATKFHEDNP----QLDYVET--RDL--VS--NPYVKASEWGW-QIDPAGLRYSLNWFWDHYQ-LPLFIVEN 375 (476)
T ss_pred EEEecccCcccccCCCCC----CCCcccc--ccc--cc--CCCcccCCCCC-ccCcHHHHHHHHHHHHhcC-CCEEEEeC
Confidence 999999999987532100 0000000 000 01 23445677999 5999999999999999997 57999999
Q ss_pred CccCCCCCCCCCCCccCchhhHHHHHHHHHHHHHHH-HcCCCeEEEEeecccccccccCC-CCCccceEEecCC-----C
Q 009535 424 GYGEICMPNSSTEDLLNDVKRVEYMASYLDALITAV-RDGADVRGYFVWSLLDSFEWTYG-YTARFGLHHVDFA-----T 496 (532)
Q Consensus 424 G~~~~~~~~~~~~g~i~D~~Ri~yl~~hl~~v~~Ai-~dGv~V~GY~~WSl~Dn~EW~~G-y~~rfGL~~VD~~-----~ 496 (532)
|++..++ .+.+|+|+|++||+||++||++|++|| +|||||+|||+|||+|||||.+| |++|||||+||++ |
T Consensus 376 G~~~~d~--~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~~dGv~V~GY~~WSl~Dn~Ew~~G~y~~RfGlv~VD~~~~~~~t 453 (476)
T PRK09589 376 GFGAIDQ--READGTVNDHYRIDYLAAHIREMKKAVVEDGVDLMGYTPWGCIDLVSAGTGEMKKRYGFIYVDKDNEGKGT 453 (476)
T ss_pred CcccCCC--CCcCCcccCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeccccccccccCCccccceeeEEEcCCCCCCcc
Confidence 9998765 456788999999999999999999999 89999999999999999999999 9999999999998 4
Q ss_pred CcccccchHHHHHHHHHhCCCC
Q 009535 497 LKRTPKLSATWYKHFIAKHKLI 518 (532)
Q Consensus 497 ~~R~pK~S~~~y~~ii~~~~~~ 518 (532)
++|+||+|++|||++|++|+.+
T Consensus 454 ~~R~pK~S~~wy~~~i~~ng~~ 475 (476)
T PRK09589 454 LERSRKKSFYWYRDVIANNGEN 475 (476)
T ss_pred cccccccHHHHHHHHHHhcCCC
Confidence 6999999999999999998764
No 11
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=100.00 E-value=1.7e-124 Score=1009.25 Aligned_cols=449 Identities=31% Similarity=0.525 Sum_probs=391.0
Q ss_pred CCCCCCCCCcEEeeecccccccCCcCCCCCccccccccc---c-CCCCcc----CC--CCCCccchhhhchHHHHHHHHH
Q 009535 40 LDPSPFPSNFLFGTSTSSYQVEGAYVSEGKGLSNWDVFT---H-TPGNID----DG--SSGDVAVDHYHRYLEDIDLMES 109 (532)
Q Consensus 40 ~~~~~fP~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~---~-~~~~~~----~~--~~~~~a~d~y~ry~eDi~l~k~ 109 (532)
+++.+||++|+||+|||||||||++++||||+|+||.|. + .++++. ++ .++++||||||||+|||+|||+
T Consensus 1 ~~~~~FP~~FlwG~AtsA~QiEGa~~e~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~EDI~Lm~e 80 (477)
T PRK15014 1 MKKLTLPKDFLWGGAVAAHQVEGGWNKGGKGPSICDVLTGGAHGVPREITKEVVPGKYYPNHEAVDFYGHYKEDIKLFAE 80 (477)
T ss_pred CCcCCCCCCCEEeeecHHHHhCCCcCCCCCcccHhhccccccccCccccccccccCCcCCCCcccCcccccHHHHHHHHH
Confidence 356789999999999999999999999999999999998 4 344441 23 2678999999999999999999
Q ss_pred cCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecCCCCcHhHHHhhCCCCChhhHHHHHHHHH
Q 009535 110 LGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFAD 189 (532)
Q Consensus 110 lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~ 189 (532)
||+|+|||||+||||+|+|..|.+|++||+||+++|++|+++||+|+|||+|||+|+||+++||||+|++++++|++||+
T Consensus 81 lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP~~L~~~yGGW~n~~~~~~F~~Ya~ 160 (477)
T PRK15014 81 MGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLHLVQQYGSWTNRKVVDFFVRFAE 160 (477)
T ss_pred cCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCChHHHHHHHHHHH
Confidence 99999999999999999985467999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCceeEEEecCchhh-----hhccccc-CCC-CCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 009535 190 ICFKSFGDRVKYWFTINEPNMQ-----VTLSYRL-GCH-PPAHCSQPFGNCSQGNSEEEPFIAAHNLILSHATAVDIYRT 262 (532)
Q Consensus 190 ~~~~~fgd~v~~w~t~NEp~~~-----~~~gy~~-g~~-~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAha~A~~~~r~ 262 (532)
.||++|||+|++|+|||||+++ +..||.. |.+ ||+... ..+.++|+||+++|||+|++++|+
T Consensus 161 ~~f~~fgdrVk~WiT~NEp~~~~~~~~~~~gy~~~g~~~~~~~~~-----------~~~~~~~~h~~llAHa~A~~~~~~ 229 (477)
T PRK15014 161 VVFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHENP-----------EETMYQVLHHQFVASALAVKAARR 229 (477)
T ss_pred HHHHHhcCcCCEEEEecCcccccccccccccccccccccCCCCch-----------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987 6678874 665 444321 245899999999999999999998
Q ss_pred hccCCCCCcEEEEeeCceeecCCCCHHHHHHHHHHHHHhccccccceecCCCCHHHHHHHhccC--CCCCHHHHHHh-hc
Q 009535 263 KYQKDQGGSIGIILNTLWFEPISSSTADKLAAERAQSFYMNWFLDPIIYGKYPAEMMNIVGSTL--PKFSSRDKEKL-KQ 339 (532)
Q Consensus 263 ~~~~~~~gkIGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~~~dp~~~G~yP~~~~~~lg~~l--p~ft~ed~~~i-kg 339 (532)
.. ++++||++++..+++|.+++|+|++||++++. ...+|+||+++|+||+.|++.++++. |.++++|+++| ++
T Consensus 230 ~~---~~~~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~-~~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~i~~~ 305 (477)
T PRK15014 230 IN---PEMKVGCMLAMVPLYPYSCNPDDVMFAQESMR-ERYVFTDVQLRGYYPSYVLNEWERRGFNIKMEDGDLDVLREG 305 (477)
T ss_pred hC---CCCeEEEEEeCceeccCCCCHHHHHHHHHHHH-hcccccccccCCCCCHHHHHHHHhcCCCCCCCHHHHHHHhcC
Confidence 65 68999999999999999999999999998763 22359999999999999999998764 78999999998 58
Q ss_pred CcceeEeecCcceEEecCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCcccChHHHHHHHHHHHHHcCCCCEE
Q 009535 340 GLDFIGINHYTSTYVQDCIFSACKPGPGASKTEGFCLQNSQKHGVPLGEPTTLFWLNVYPQGMWKIIKYIKERYKNTPMF 419 (532)
Q Consensus 340 ~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~w~~i~P~GL~~~L~~~~~rY~~~PI~ 419 (532)
++||||||||++.+|+....... ..+.+ .. ... ++..+.+++|| +|+|+||+.+|+++++||+ .|||
T Consensus 306 ~~DFlGiNyYt~~~v~~~~~~~~--~~~~~-----~~--~~~--~~~~~~~~~gw-~i~P~Gl~~~l~~~~~~Y~-~Pi~ 372 (477)
T PRK15014 306 TCDYLGFSYYMTNAVKAEGGTGD--AISGF-----EG--SVP--NPYVKASDWGW-QIDPVGLRYALCELYERYQ-KPLF 372 (477)
T ss_pred CCCEEEEcceeCeeeccCCCCCC--Ccccc-----cc--ccC--CCCcccCCCCC-ccCcHHHHHHHHHHHHhcC-CCEE
Confidence 99999999999999975321000 00000 00 001 23345677999 5999999999999999997 5799
Q ss_pred EeecCccCCCCCCCCCCCccCchhhHHHHHHHHHHHHHHHH-cCCCeEEEEeecccccccccCC-CCCccceEEecCCC-
Q 009535 420 ITENGYGEICMPNSSTEDLLNDVKRVEYMASYLDALITAVR-DGADVRGYFVWSLLDSFEWTYG-YTARFGLHHVDFAT- 496 (532)
Q Consensus 420 ITENG~~~~~~~~~~~~g~i~D~~Ri~yl~~hl~~v~~Ai~-dGv~V~GY~~WSl~Dn~EW~~G-y~~rfGL~~VD~~~- 496 (532)
|||||++..++ .+.+|+|+|++||+||++||++|++||+ |||||+|||+|||+|||||.+| |++|||||+||+++
T Consensus 373 ItENG~~~~d~--~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~~dGv~v~GY~~WSl~DnfEw~~G~y~~RfGl~~VD~~~~ 450 (477)
T PRK15014 373 IVENGFGAYDK--VEEDGSINDDYRIDYLRAHIEEMKKAVTYDGVDLMGYTPWGCIDCVSFTTGQYSKRYGFIYVNKHDD 450 (477)
T ss_pred EeCCCCCCCCC--cCcCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhcccCCCccCccceEEECCCCC
Confidence 99999998764 4567899999999999999999999995 9999999999999999999999 99999999999984
Q ss_pred ----CcccccchHHHHHHHHHhCCCC
Q 009535 497 ----LKRTPKLSATWYKHFIAKHKLI 518 (532)
Q Consensus 497 ----~~R~pK~S~~~y~~ii~~~~~~ 518 (532)
++|+||+|++||+++|++|+..
T Consensus 451 ~~~~~~R~pK~S~~wy~~ii~~ng~~ 476 (477)
T PRK15014 451 GTGDMSRSRKKSFNWYKEVIASNGEK 476 (477)
T ss_pred CCcccceecccHHHHHHHHHHhcCCC
Confidence 6999999999999999998764
No 12
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=100.00 E-value=3.9e-124 Score=1004.72 Aligned_cols=446 Identities=30% Similarity=0.514 Sum_probs=395.8
Q ss_pred CCCCCcEEeeecccccccCCcCCCCCccccccccccCCCCcc------------CCC--CCCccchhhhchHHHHHHHHH
Q 009535 44 PFPSNFLFGTSTSSYQVEGAYVSEGKGLSNWDVFTHTPGNID------------DGS--SGDVAVDHYHRYLEDIDLMES 109 (532)
Q Consensus 44 ~fP~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~~~~~~------------~~~--~~~~a~d~y~ry~eDi~l~k~ 109 (532)
+||++|+||+|||||||||++++||||+|+||.|.+.++++. ++. ++++||||||||+|||+||++
T Consensus 3 ~FP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~eDi~l~~~ 82 (474)
T PRK09852 3 VFPEGFLWGGALAANQSEGAFREGGKGLTTVDMIPHGEHRMAVKLGLEKRFQLRDDEFYPSHEAIDFYHRYKEDIALMAE 82 (474)
T ss_pred CCCCCCEEeccchHhhcCCCcCCCCCCCchhhccccCCCcccccccccccccccccCcCCCCccCchhhhhHHHHHHHHH
Confidence 599999999999999999999999999999999998666542 222 678999999999999999999
Q ss_pred cCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecCCCCcHhHHHhhCCCCChhhHHHHHHHHH
Q 009535 110 LGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFAD 189 (532)
Q Consensus 110 lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~ 189 (532)
||+|+|||||+||||+|++..+.+|+++|++|+++|++|+++||+|||||+|||+|+||++++|||+|++++++|++||+
T Consensus 83 lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~~l~~~~GGW~~~~~~~~F~~ya~ 162 (474)
T PRK09852 83 MGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMHLVTEYGSWRNRKMVEFFSRYAR 162 (474)
T ss_pred cCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999985357899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCceeEEEecCchhhhhcccc-cCC-CCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhccCC
Q 009535 190 ICFKSFGDRVKYWFTINEPNMQVTLSYR-LGC-HPPAHCSQPFGNCSQGNSEEEPFIAAHNLILSHATAVDIYRTKYQKD 267 (532)
Q Consensus 190 ~~~~~fgd~v~~w~t~NEp~~~~~~gy~-~g~-~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAha~A~~~~r~~~~~~ 267 (532)
.||++|||+|++|+|||||++++..||. .|. +|||... ....++++||+++|||+||+++|+..
T Consensus 163 ~~~~~fgd~Vk~WiTfNEPn~~~~~gy~~~g~~~~p~~~~-----------~~~~~~~~hn~llAHa~A~~~~~~~~--- 228 (474)
T PRK09852 163 TCFEAFDGLVKYWLTFNEINIMLHSPFSGAGLVFEEGENQ-----------DQVKYQAAHHELVASALATKIAHEVN--- 228 (474)
T ss_pred HHHHHhcCcCCeEEeecchhhhhccCccccCcccCCCCCc-----------hHhHHHHHHHHHHHHHHHHHHHHHhC---
Confidence 9999999999999999999999999996 564 4887532 24579999999999999999999865
Q ss_pred CCCcEEEEeeCceeecCCCCHHHHHHHHHHHHHhccccccceecCCCCHHHHHHHhcc--CCCCCHHHHHHhhcCcceeE
Q 009535 268 QGGSIGIILNTLWFEPISSSTADKLAAERAQSFYMNWFLDPIIYGKYPAEMMNIVGST--LPKFSSRDKEKLKQGLDFIG 345 (532)
Q Consensus 268 ~~gkIGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~~~dp~~~G~yP~~~~~~lg~~--lp~ft~ed~~~ikg~~DFlG 345 (532)
++++||++++..+++|.+++++|++||++++ +.+.||+||+++|+||+.|++.++++ +|.|+++|+++|++++||||
T Consensus 229 ~~~~IGi~~~~~~~~P~~~~~~d~~AA~~~~-~~~~~~~d~~~~G~YP~~~~~~~~~~~~~p~~~~~d~~~i~~~~DFlG 307 (474)
T PRK09852 229 PQNQVGCMLAGGNFYPYSCKPEDVWAALEKD-RENLFFIDVQARGAYPAYSARVFREKGVTIDKAPGDDEILKNTVDFVS 307 (474)
T ss_pred CCCeEEEEEeCCeeeeCCCCHHHHHHHHHHH-HHhhhhcchhhCCCccHHHHHHHHhcCCCCCCCHHHHHHhcCCCCEEE
Confidence 6899999999999999999999999998766 55789999999999999999999864 79999999999999999999
Q ss_pred eecCcceEEecCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCcccChHHHHHHHHHHHHHcCCCCEEEeecCc
Q 009535 346 INHYTSTYVQDCIFSACKPGPGASKTEGFCLQNSQKHGVPLGEPTTLFWLNVYPQGMWKIIKYIKERYKNTPMFITENGY 425 (532)
Q Consensus 346 iNyYt~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~w~~i~P~GL~~~L~~~~~rY~~~PI~ITENG~ 425 (532)
||||++.+|+...... ... ....+.. . .++..+.+++|| +|+|+||+.+|+++++||+ .||||||||+
T Consensus 308 iNyYt~~~v~~~~~~~----~~~--~~~~~~~--~--~~p~~~~~~~gw-~i~P~Gl~~~l~~~~~~Y~-~Pi~ItENG~ 375 (474)
T PRK09852 308 FSYYASRCASAEMNAN----NSS--AANVVKS--L--RNPYLQVSDWGW-GIDPLGLRITMNMMYDRYQ-KPLFLVENGL 375 (474)
T ss_pred EccccCeecccCCCCC----CCC--cCCceec--c--cCCCcccCCCCC-eeChHHHHHHHHHHHHhcC-CCEEEeCCCC
Confidence 9999999997532100 000 0000000 0 124456678999 5999999999999999997 5799999999
Q ss_pred cCCCCCCCCCCCccCchhhHHHHHHHHHHHHHHHHcCCCeEEEEeecccccccccCC-CCCccceEEecCC-----CCcc
Q 009535 426 GEICMPNSSTEDLLNDVKRVEYMASYLDALITAVRDGADVRGYFVWSLLDSFEWTYG-YTARFGLHHVDFA-----TLKR 499 (532)
Q Consensus 426 ~~~~~~~~~~~g~i~D~~Ri~yl~~hl~~v~~Ai~dGv~V~GY~~WSl~Dn~EW~~G-y~~rfGL~~VD~~-----~~~R 499 (532)
+..++ .+.+|+|+|++||+||++||++|++||+|||||+|||+|||+|||||..| |++|||||+||++ |++|
T Consensus 376 ~~~d~--~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~V~GY~~WSl~Dn~Ew~~G~y~~RfGLv~VD~~~~~~~t~~R 453 (474)
T PRK09852 376 GAKDE--IAANGEINDDYRISYLREHIRAMGEAIADGIPLMGYTTWGCIDLVSASTGEMSKRYGFVYVDRDDAGNGTLTR 453 (474)
T ss_pred CCCCC--cCCCCccCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEeecccccccccCCCccceeeeEEECCCCCCCcccce
Confidence 98765 45678899999999999999999999999999999999999999999999 9999999999998 5699
Q ss_pred cccchHHHHHHHHHhCCCC
Q 009535 500 TPKLSATWYKHFIAKHKLI 518 (532)
Q Consensus 500 ~pK~S~~~y~~ii~~~~~~ 518 (532)
+||+|++||+++|++|+.+
T Consensus 454 ~pK~S~~wy~~ii~~ng~~ 472 (474)
T PRK09852 454 TRKKSFWWYKKVIASNGED 472 (474)
T ss_pred ecccHHHHHHHHHHhCCcc
Confidence 9999999999999999873
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=100.00 E-value=2.5e-121 Score=976.18 Aligned_cols=427 Identities=46% Similarity=0.845 Sum_probs=393.1
Q ss_pred CCCCcEEeeecccccccCCcCCCCCccccccccccCCCCccCCCCCCccchhhhchHHHHHHHHHcCCCeeEecccccee
Q 009535 45 FPSNFLFGTSTSSYQVEGAYVSEGKGLSNWDVFTHTPGNIDDGSSGDVAVDHYHRYLEDIDLMESLGVNSYRFSISWARI 124 (532)
Q Consensus 45 fP~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~~~~~~~~~~~~~a~d~y~ry~eDi~l~k~lG~~~~R~si~W~ri 124 (532)
||++|+||+||||||+||+++++|||+|+||.+.+.++++.++.++++||||||||+|||++||+||+++|||||+|+||
T Consensus 1 fp~~FlwG~atsa~Q~EG~~~~~gkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~~G~~~~R~si~Wsri 80 (427)
T TIGR03356 1 FPKDFLWGVATASYQIEGAVNEDGRGPSIWDTFSHTPGKVKDGDTGDVACDHYHRYEEDVALMKELGVDAYRFSIAWPRI 80 (427)
T ss_pred CCCCCEEeeechHHhhCCCcCCCCCccchhheeccCCCcccCCCCCCccccHHHhHHHHHHHHHHcCCCeEEcccchhhc
Confidence 89999999999999999999999999999999998777776777889999999999999999999999999999999999
Q ss_pred ecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecCCCCcHhHHHhhCCCCChhhHHHHHHHHHHHHHHhCCCceeEEE
Q 009535 125 LPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSFGDRVKYWFT 204 (532)
Q Consensus 125 ~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~fgd~v~~w~t 204 (532)
+|+|+ |.+|++++++|+++|++|+++||+|||||+|||+|+||+++ |||.|++++++|++||+.|+++||++|++|+|
T Consensus 81 ~p~g~-~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P~~l~~~-gGw~~~~~~~~f~~ya~~~~~~~~d~v~~w~t 158 (427)
T TIGR03356 81 FPEGT-GPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLPQALEDR-GGWLNRDTAEWFAEYAAVVAERLGDRVKHWIT 158 (427)
T ss_pred ccCCC-CCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCccHHHHhc-CCCCChHHHHHHHHHHHHHHHHhCCcCCEEEE
Confidence 99976 89999999999999999999999999999999999999988 99999999999999999999999999999999
Q ss_pred ecCchhhhhcccccCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhccCCCCCcEEEEeeCceeecC
Q 009535 205 INEPNMQVTLSYRLGCHPPAHCSQPFGNCSQGNSEEEPFIAAHNLILSHATAVDIYRTKYQKDQGGSIGIILNTLWFEPI 284 (532)
Q Consensus 205 ~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAha~A~~~~r~~~~~~~~gkIGi~~~~~~~~P~ 284 (532)
||||++++..||..|.+||+.++. ...++++||+++|||+|+++||++. ++++||++++..+++|.
T Consensus 159 ~NEp~~~~~~~y~~G~~~P~~~~~-----------~~~~~~~hnll~Aha~A~~~~~~~~---~~~~IGi~~~~~~~~P~ 224 (427)
T TIGR03356 159 LNEPWCSAFLGYGLGVHAPGLRDL-----------RAALQAAHHLLLAHGLAVQALRANG---PGAQVGIVLNLTPVYPA 224 (427)
T ss_pred ecCcceecccchhhccCCCCCccH-----------HHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEEeCCeeeeC
Confidence 999999999999999999985431 4578999999999999999999975 68999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhccccccceecCCCCHHHHHHHhccCCCCCHHHHHHhhcCcceeEeecCcceEEecCCCCCCCC
Q 009535 285 SSSTADKLAAERAQSFYMNWFLDPIIYGKYPAEMMNIVGSTLPKFSSRDKEKLKQGLDFIGINHYTSTYVQDCIFSACKP 364 (532)
Q Consensus 285 ~~~~~D~~aa~~~~~~~~~~~~dp~~~G~yP~~~~~~lg~~lp~ft~ed~~~ikg~~DFlGiNyYt~~~v~~~~~~~~~~ 364 (532)
+++++|+.||++++++.++||+||++.|+||..|++.++ .+|.||++|++++++++||||||||++..|+......
T Consensus 225 ~~~~~d~~aa~~~~~~~~~~f~d~~~~G~yP~~~~~~l~-~~p~~~~~d~~~l~~~~DFiGiNyY~~~~v~~~~~~~--- 300 (427)
T TIGR03356 225 SDSPEDVAAARRADGLLNRWFLDPLLKGRYPEDLLEYLG-DAPFVQDGDLETIAQPLDFLGINYYTRSVVAADPGTG--- 300 (427)
T ss_pred CCCHHHHHHHHHHHHHHhhhhhHHHhCCCCCHHHHHHhc-cCCCCCHHHHHHhcCCCCEEEEeccccceeccCCCCC---
Confidence 999999999999999999999999999999999999997 4799999999999999999999999999987532100
Q ss_pred CCCCCCCCCccccccccCCCCCCCCCCCCCcccChHHHHHHHHHHHHHcCCCCEEEeecCccCCCCCCCCCCCccCchhh
Q 009535 365 GPGASKTEGFCLQNSQKHGVPLGEPTTLFWLNVYPQGMWKIIKYIKERYKNTPMFITENGYGEICMPNSSTEDLLNDVKR 444 (532)
Q Consensus 365 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~w~~i~P~GL~~~L~~~~~rY~~~PI~ITENG~~~~~~~~~~~~g~i~D~~R 444 (532)
... . . .++..+.+++|| +|+|+||+.+|+++++||++|||||||||++..++ .+ +|+++|++|
T Consensus 301 --~~~--~-------~--~~~~~~~~~~gw-~i~P~Gl~~~L~~~~~rY~~ppi~ITENG~~~~d~--~~-~g~~~D~~R 363 (427)
T TIGR03356 301 --AGF--V-------E--VPEGVPKTAMGW-EVYPEGLYDLLLRLKEDYPGPPIYITENGAAFDDE--VT-DGEVHDPER 363 (427)
T ss_pred --CCc--c-------c--cCCCCCcCCCCC-eechHHHHHHHHHHHHhcCCCCEEEeCCCCCcCCC--Cc-CCCcCCHHH
Confidence 000 0 0 012224567899 59999999999999999988899999999998764 33 788999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEeecccccccccCCCCCccceEEecCCCCcccccchHHHH
Q 009535 445 VEYMASYLDALITAVRDGADVRGYFVWSLLDSFEWTYGYTARFGLHHVDFATLKRTPKLSATWY 508 (532)
Q Consensus 445 i~yl~~hl~~v~~Ai~dGv~V~GY~~WSl~Dn~EW~~Gy~~rfGL~~VD~~~~~R~pK~S~~~y 508 (532)
|+||++||++|++||+|||||+||++|||+|||||.+||++||||++||++|++|+||+|++||
T Consensus 364 i~yl~~hl~~~~~Ai~dGv~v~GY~~Wsl~Dn~ew~~gy~~rfGl~~VD~~~~~R~~K~S~~wy 427 (427)
T TIGR03356 364 IAYLRDHLAALARAIEEGVDVRGYFVWSLLDNFEWAEGYSKRFGLVHVDYETQKRTPKDSAKWY 427 (427)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEecccccccchhcccccccceEEECCCCCcccccceeeeC
Confidence 9999999999999999999999999999999999999999999999999999999999999997
No 14
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=99.60 E-value=1.4e-13 Score=138.09 Aligned_cols=249 Identities=13% Similarity=0.119 Sum_probs=159.9
Q ss_pred ccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCcc--EEEecCCCCcHhHHHhhCCCCChhhHHHHHHHHHHHHHHhCC
Q 009535 120 SWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQP--FVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSFGD 197 (532)
Q Consensus 120 ~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~p--ivtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~fgd 197 (532)
.|++++|++ |.+|+ +..+++++.++++||++ .+.+.|...|.|+... + .++..+.+.+|++.+++||++
T Consensus 2 kW~~~ep~~--G~~n~---~~~D~~~~~a~~~gi~v~gH~l~W~~~~P~W~~~~--~--~~~~~~~~~~~i~~v~~ry~g 72 (254)
T smart00633 2 KWDSTEPSR--GQFNF---SGADAIVNFAKENGIKVRGHTLVWHSQTPDWVFNL--S--KETLLARLENHIKTVVGRYKG 72 (254)
T ss_pred CcccccCCC--CccCh---HHHHHHHHHHHHCCCEEEEEEEeecccCCHhhhcC--C--HHHHHHHHHHHHHHHHHHhCC
Confidence 699999998 99999 55588999999999995 4456677899999742 2 567789999999999999999
Q ss_pred CceeEEEecCchhhhhcccccCCCCCCCCCCCCCCCCCCCCCchHHHHH-HHHHHHHHHHHHHHHHhccCCCCCcEEEEe
Q 009535 198 RVKYWFTINEPNMQVTLSYRLGCHPPAHCSQPFGNCSQGNSEEEPFIAA-HNLILSHATAVDIYRTKYQKDQGGSIGIIL 276 (532)
Q Consensus 198 ~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~-hn~llAha~A~~~~r~~~~~~~~gkIGi~~ 276 (532)
+|..|-++|||..... +|.+. ...+++. ... -..|.++.|+.. |+.++-+
T Consensus 73 ~i~~wdV~NE~~~~~~---------~~~~~------------~~w~~~~G~~~---i~~af~~ar~~~---P~a~l~~-- 123 (254)
T smart00633 73 KIYAWDVVNEALHDNG---------SGLRR------------SVWYQILGEDY---IEKAFRYAREAD---PDAKLFY-- 123 (254)
T ss_pred cceEEEEeeecccCCC---------ccccc------------chHHHhcChHH---HHHHHHHHHHhC---CCCEEEE--
Confidence 9999999999985210 01110 0011111 111 123666667653 5655543
Q ss_pred eCceeecCCCCHHHHHHHHHHHHHhccccccceecCCCCHHHHHHHhccCCCCCHHHHHHhhcCcceeEeecCcceEEec
Q 009535 277 NTLWFEPISSSTADKLAAERAQSFYMNWFLDPIIYGKYPAEMMNIVGSTLPKFSSRDKEKLKQGLDFIGINHYTSTYVQD 356 (532)
Q Consensus 277 ~~~~~~P~~~~~~D~~aa~~~~~~~~~~~~dp~~~G~yP~~~~~~lg~~lp~ft~ed~~~ikg~~DFlGiNyYt~~~v~~ 356 (532)
|-.... +.. .. ......+ .+. +..-..++|-||++.... .
T Consensus 124 Ndy~~~--~~~-~k---~~~~~~~------------------v~~------------l~~~g~~iDgiGlQ~H~~----~ 163 (254)
T smart00633 124 NDYNTE--EPN-AK---RQAIYEL------------------VKK------------LKAKGVPIDGIGLQSHLS----L 163 (254)
T ss_pred eccCCc--Ccc-HH---HHHHHHH------------------HHH------------HHHCCCccceeeeeeeec----C
Confidence 311111 010 01 1111111 111 111123478899853210 0
Q ss_pred CCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCcccChHHHHHHHHHHHHHcCCCCEEEeecCccCCCCCCCCCC
Q 009535 357 CIFSACKPGPGASKTEGFCLQNSQKHGVPLGEPTTLFWLNVYPQGMWKIIKYIKERYKNTPMFITENGYGEICMPNSSTE 436 (532)
Q Consensus 357 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~w~~i~P~GL~~~L~~~~~rY~~~PI~ITENG~~~~~~~~~~~~ 436 (532)
. ...|..|+..|..+.+. ++||+|||.++...+.
T Consensus 164 -~-------------------------------------~~~~~~~~~~l~~~~~~--g~pi~iTE~dv~~~~~------ 197 (254)
T smart00633 164 -G-------------------------------------SPNIAEIRAALDRFASL--GLEIQITELDISGYPN------ 197 (254)
T ss_pred -C-------------------------------------CCCHHHHHHHHHHHHHc--CCceEEEEeecCCCCc------
Confidence 0 01245789999998765 6899999999986531
Q ss_pred CccCchhhHHHHHHHHHHHHHHHHcCCCeEEEEeecccccccccCCCCCccceEEecCCCCcccccchHHH
Q 009535 437 DLLNDVKRVEYMASYLDALITAVRDGADVRGYFVWSLLDSFEWTYGYTARFGLHHVDFATLKRTPKLSATW 507 (532)
Q Consensus 437 g~i~D~~Ri~yl~~hl~~v~~Ai~dGv~V~GY~~WSl~Dn~EW~~Gy~~rfGL~~VD~~~~~R~pK~S~~~ 507 (532)
...+.+++++.+..+.+- -.|.|.++|.+.|..+|..+ .+.||+.=| -+||++.++
T Consensus 198 ----~~~qA~~~~~~l~~~~~~----p~v~gi~~Wg~~d~~~W~~~--~~~~L~d~~-----~~~kpa~~~ 253 (254)
T smart00633 198 ----PQAQAADYEEVFKACLAH----PAVTGVTVWGVTDKYSWLDG--GAPLLFDAN-----YQPKPAYWA 253 (254)
T ss_pred ----HHHHHHHHHHHHHHHHcC----CCeeEEEEeCCccCCcccCC--CCceeECCC-----CCCChhhhc
Confidence 256777777777666542 27899999999999999765 567887433 467887754
No 15
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.43 E-value=3.5e-12 Score=128.24 Aligned_cols=109 Identities=23% Similarity=0.323 Sum_probs=90.5
Q ss_pred chHHHHHHHHHcCCCeeEeccccceee-cCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecCCCCcHhHHHhhCCC-C
Q 009535 99 RYLEDIDLMESLGVNSYRFSISWARIL-PKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAW-L 176 (532)
Q Consensus 99 ry~eDi~l~k~lG~~~~R~si~W~ri~-P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~P~~l~~~~ggw-~ 176 (532)
-.++|++.||++|+|++|+.|.|..++ |.+. +.++...++.++++|+.+.++||.+|++||+. |.|.... +++ .
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~-~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~--~~w~~~~-~~~~~ 97 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPG-YNYDETYLARLDRIVDAAQAYGIYVILDLHNA--PGWANGG-DGYGN 97 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTT-TSBTHHHHHHHHHHHHHHHHTT-EEEEEEEES--TTCSSST-STTTT
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCC-ccccHHHHHHHHHHHHHHHhCCCeEEEEeccC--ccccccc-ccccc
Confidence 568999999999999999999998888 4553 57999999999999999999999999999975 6674322 233 3
Q ss_pred ChhhHHHHHHHHHHHHHHhCC--CceeEEEecCchhh
Q 009535 177 SPESQEDFGYFADICFKSFGD--RVKYWFTINEPNMQ 211 (532)
Q Consensus 177 ~~~~~~~f~~ya~~~~~~fgd--~v~~w~t~NEp~~~ 211 (532)
.....+.|.++++.++++|++ .|..|.++|||...
T Consensus 98 ~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~ 134 (281)
T PF00150_consen 98 NDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGG 134 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCST
T ss_pred chhhHHHHHhhhhhhccccCCCCcEEEEEecCCcccc
Confidence 345678899999999999944 68899999999864
No 16
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.25 E-value=1.4e-11 Score=130.32 Aligned_cols=109 Identities=28% Similarity=0.458 Sum_probs=88.1
Q ss_pred hchHHHHHHHHHcCCCeeEe-ccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecCCCCcHhHHHhh----
Q 009535 98 HRYLEDIDLMESLGVNSYRF-SISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKY---- 172 (532)
Q Consensus 98 ~ry~eDi~l~k~lG~~~~R~-si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~P~~l~~~~---- 172 (532)
..+++|+++||++|+|++|+ .++|++|||++ |.+|+ .++|++|+.+.++||++++.+.....|.|+.+++
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~e--G~ydF---~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~ 84 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEE--GQYDF---SWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEIL 84 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBT--TB------HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC
T ss_pred HHHHHHHHHHHHcCCCEEEEEEechhhccCCC--Ceeec---HHHHHHHHHHHhccCeEEEEecccccccchhhhccccc
Confidence 36999999999999999997 57999999999 99999 6679999999999999999999999999998642
Q ss_pred -----------CC-----CCChhhHHHHHHHHHHHHHHhCC--CceeEEEecCchhh
Q 009535 173 -----------GA-----WLSPESQEDFGYFADICFKSFGD--RVKYWFTINEPNMQ 211 (532)
Q Consensus 173 -----------gg-----w~~~~~~~~f~~ya~~~~~~fgd--~v~~w~t~NEp~~~ 211 (532)
|. ..+|...+.+.++++.++++|++ .|-.|.+.|||...
T Consensus 85 ~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~~ 141 (374)
T PF02449_consen 85 PVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGYH 141 (374)
T ss_dssp -B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTCT
T ss_pred ccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCcC
Confidence 11 23467788899999999999998 47899999998753
No 17
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.20 E-value=5.6e-09 Score=108.02 Aligned_cols=252 Identities=17% Similarity=0.284 Sum_probs=142.0
Q ss_pred HHHHHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecC---CCCcHhHHHhhCCCCC
Q 009535 101 LEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQ---FDSPQEIEDKYGAWLS 177 (532)
Q Consensus 101 ~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H---~~~P~~l~~~~ggw~~ 177 (532)
++=+++||+.|+|++|+-+ | +.|... |..|. +.-.++..+++++||+.++++|- |.=|.--.. ..+|.+
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-w--v~P~~~-g~~~~---~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~-P~aW~~ 98 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-W--VNPYDG-GYNDL---EDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNK-PAAWAN 98 (332)
T ss_dssp --HHHHHHHTT--EEEEEE----SS-TTT-TTTSH---HHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B---TTCTS
T ss_pred CCHHHHHHhcCCCeEEEEe-c--cCCccc-ccCCH---HHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCC-CccCCC
Confidence 4557999999999999977 4 233321 66565 66789999999999999999984 333432222 268988
Q ss_pred ---hhhHHHHHHHHHHHHHHhCC---CceeEEEecCchhhhhcccccCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHH
Q 009535 178 ---PESQEDFGYFADICFKSFGD---RVKYWFTINEPNMQVTLSYRLGCHPPAHCSQPFGNCSQGNSEEEPFIAAHNLIL 251 (532)
Q Consensus 178 ---~~~~~~f~~ya~~~~~~fgd---~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~ll 251 (532)
.+..+...+|.+.+.+.+++ .++++.+=||.+.-. .||-|.. ..+.-.-.++.
T Consensus 99 ~~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gm-------lwp~g~~--------------~~~~~~a~ll~ 157 (332)
T PF07745_consen 99 LSFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGM-------LWPDGKP--------------SNWDNLAKLLN 157 (332)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGES-------TBTTTCT--------------T-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCccccccc-------cCcCCCc--------------cCHHHHHHHHH
Confidence 67788889999999988844 678888889987421 1444432 22344455666
Q ss_pred HHHHHHHHHHHhccCCCCCcEEEEeeCceeecCCCCHHHHHHHHHHHHHhccccccceecCCCCHHHHHHHhccCCCCCH
Q 009535 252 SHATAVDIYRTKYQKDQGGSIGIILNTLWFEPISSSTADKLAAERAQSFYMNWFLDPIIYGKYPAEMMNIVGSTLPKFSS 331 (532)
Q Consensus 252 Aha~A~~~~r~~~~~~~~gkIGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~~~dp~~~G~yP~~~~~~lg~~lp~ft~ 331 (532)
| +++++|+.. ++.||-+.+.. | .|..... ||.+-+
T Consensus 158 a---g~~AVr~~~---p~~kV~lH~~~----~-----~~~~~~~--------~~f~~l---------------------- 192 (332)
T PF07745_consen 158 A---GIKAVREVD---PNIKVMLHLAN----G-----GDNDLYR--------WFFDNL---------------------- 192 (332)
T ss_dssp H---HHHHHHTHS---STSEEEEEES-----T-----TSHHHHH--------HHHHHH----------------------
T ss_pred H---HHHHHHhcC---CCCcEEEEECC----C-----CchHHHH--------HHHHHH----------------------
Confidence 6 555666643 57777655542 1 1221111 122111
Q ss_pred HHHHHhhcCcceeEeecCcceEEecCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCcccChHHHHHHHHHHHH
Q 009535 332 RDKEKLKQGLDFIGINHYTSTYVQDCIFSACKPGPGASKTEGFCLQNSQKHGVPLGEPTTLFWLNVYPQGMWKIIKYIKE 411 (532)
Q Consensus 332 ed~~~ikg~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~w~~i~P~GL~~~L~~~~~ 411 (532)
.......|+||++||.- |. -....|...|+.+.+
T Consensus 193 ---~~~g~d~DviGlSyYP~------------------------------------------w~-~~l~~l~~~l~~l~~ 226 (332)
T PF07745_consen 193 ---KAAGVDFDVIGLSYYPF------------------------------------------WH-GTLEDLKNNLNDLAS 226 (332)
T ss_dssp ---HHTTGG-SEEEEEE-ST------------------------------------------TS-T-HHHHHHHHHHHHH
T ss_pred ---HhcCCCcceEEEecCCC------------------------------------------Cc-chHHHHHHHHHHHHH
Confidence 11223579999999941 00 123479999999999
Q ss_pred HcCCCCEEEeecCccCCCCCCCCCCCc-----------cCchhhHHHHHHHHHHHHHHHHc--CCCeEEEEeecccccc
Q 009535 412 RYKNTPMFITENGYGEICMPNSSTEDL-----------LNDVKRVEYMASYLDALITAVRD--GADVRGYFVWSLLDSF 477 (532)
Q Consensus 412 rY~~~PI~ITENG~~~~~~~~~~~~g~-----------i~D~~Ri~yl~~hl~~v~~Ai~d--Gv~V~GY~~WSl~Dn~ 477 (532)
||+ +||+|+|.|++...++.-..... ..-+-..+|| ..+.+++.+ |-...|.|+|-..-.-
T Consensus 227 ry~-K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l----~~l~~~v~~~p~~~g~GvfYWeP~w~~ 300 (332)
T PF07745_consen 227 RYG-KPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFL----RDLINAVKNVPNGGGLGVFYWEPAWIP 300 (332)
T ss_dssp HHT--EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHH----HHHHHHHHTS--TTEEEEEEE-TT-GG
T ss_pred HhC-CeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHH----HHHHHHHHHhccCCeEEEEeecccccc
Confidence 995 79999999988652110000000 0112344444 455555543 6799999999655443
No 18
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=99.09 E-value=2e-08 Score=104.27 Aligned_cols=301 Identities=19% Similarity=0.221 Sum_probs=177.1
Q ss_pred CCCcEEeeecccccccCCcCCCCCccccccccccCCCCccCCCCCCccchhhhchHHHHHHHHHcCCCeeEe--ccccce
Q 009535 46 PSNFLFGTSTSSYQVEGAYVSEGKGLSNWDVFTHTPGNIDDGSSGDVAVDHYHRYLEDIDLMESLGVNSYRF--SISWAR 123 (532)
Q Consensus 46 P~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~~~~~~~~~~~~~a~d~y~ry~eDi~l~k~lG~~~~R~--si~W~r 123 (532)
..+|.+|+|.++.++++.. .|++-+ .-.+|.+=. ..-|..
T Consensus 7 ~~~f~~G~av~~~~~~~~~----------------------------------~~~~~~----~~~Fn~~t~eN~~Kw~~ 48 (320)
T PF00331_consen 7 KHKFPFGAAVNAQQLEDDP----------------------------------RYRELF----AKHFNSVTPENEMKWGS 48 (320)
T ss_dssp CTTTEEEEEEBGGGHTHHH----------------------------------HHHHHH----HHH-SEEEESSTTSHHH
T ss_pred hccCCEEEEechhHcCCcH----------------------------------HHHHHH----HHhCCeeeeccccchhh
Confidence 4688999999888888731 112211 123444444 478999
Q ss_pred eecCCCCCCCChhHHHHHHHHHHHHHHcCCccEE--EecCCCCcHhHHHhhCCCCChh---hHHHHHHHHHHHHHHhCC-
Q 009535 124 ILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFV--TLTQFDSPQEIEDKYGAWLSPE---SQEDFGYFADICFKSFGD- 197 (532)
Q Consensus 124 i~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~piv--tL~H~~~P~~l~~~~ggw~~~~---~~~~f~~ya~~~~~~fgd- 197 (532)
++|.+ |.+|++ ..+++++.++++||++-. -+.|--.|.|+... .-+...+ ..+...+|.+.+++||++
T Consensus 49 ~e~~~--g~~~~~---~~D~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~-~~~~~~~~~~~~~~l~~~I~~v~~~y~~~ 122 (320)
T PF00331_consen 49 IEPEP--GRFNFE---SADAILDWARENGIKVRGHTLVWHSQTPDWVFNL-ANGSPDEKEELRARLENHIKTVVTRYKDK 122 (320)
T ss_dssp HESBT--TBEE-H---HHHHHHHHHHHTT-EEEEEEEEESSSS-HHHHTS-TTSSBHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred hcCCC--CccCcc---chhHHHHHHHhcCcceeeeeEEEcccccceeeec-cCCCcccHHHHHHHHHHHHHHHHhHhccc
Confidence 99998 999995 469999999999999773 34466789999853 1233333 788999999999999995
Q ss_pred -CceeEEEecCchhhhhcccccCCCCCCCCCCCCCCCCCCCCCchHHHHHH-HHHHHHHHHHHHHHHhccCCCCCcEEEE
Q 009535 198 -RVKYWFTINEPNMQVTLSYRLGCHPPAHCSQPFGNCSQGNSEEEPFIAAH-NLILSHATAVDIYRTKYQKDQGGSIGII 275 (532)
Q Consensus 198 -~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~h-n~llAha~A~~~~r~~~~~~~~gkIGi~ 275 (532)
+|..|=+.|||..-.. .+-+.++ ...++++= .. -..|.+..|+.. |+.+.-+.
T Consensus 123 g~i~~WDVvNE~i~~~~-------~~~~~r~------------~~~~~~lG~~y---i~~aF~~A~~~~---P~a~L~~N 177 (320)
T PF00331_consen 123 GRIYAWDVVNEAIDDDG-------NPGGLRD------------SPWYDALGPDY---IADAFRAAREAD---PNAKLFYN 177 (320)
T ss_dssp TTESEEEEEES-B-TTS-------SSSSBCT------------SHHHHHHTTCH---HHHHHHHHHHHH---TTSEEEEE
T ss_pred cceEEEEEeeecccCCC-------ccccccC------------ChhhhcccHhH---HHHHHHHHHHhC---CCcEEEec
Confidence 8999999999874321 0011111 12222211 11 123445555543 45555432
Q ss_pred eeCceeecCCCCHHHHHHHHHHHHHhccccccceecCCCCHHHHHHHhccCCCCCHHHHHHhhcCcceeEeecCcceEEe
Q 009535 276 LNTLWFEPISSSTADKLAAERAQSFYMNWFLDPIIYGKYPAEMMNIVGSTLPKFSSRDKEKLKQGLDFIGINHYTSTYVQ 355 (532)
Q Consensus 276 ~~~~~~~P~~~~~~D~~aa~~~~~~~~~~~~dp~~~G~yP~~~~~~lg~~lp~ft~ed~~~ikg~~DFlGiNyYt~~~v~ 355 (532)
-.. .+. + +. .....+ |++.+ ..-..++|=||++-.-..
T Consensus 178 Dy~--~~~----~-~k--~~~~~~------------------lv~~l------------~~~gvpIdgIG~Q~H~~~--- 215 (320)
T PF00331_consen 178 DYN--IES----P-AK--RDAYLN------------------LVKDL------------KARGVPIDGIGLQSHFDA--- 215 (320)
T ss_dssp ESS--TTS----T-HH--HHHHHH------------------HHHHH------------HHTTHCS-EEEEEEEEET---
T ss_pred ccc--ccc----h-HH--HHHHHH------------------HHHHH------------HhCCCccceechhhccCC---
Confidence 211 111 1 00 011001 11111 111124788998644110
Q ss_pred cCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCcccChHHHHHHHHHHHHHcCCCCEEEeecCccCCCCCCCCC
Q 009535 356 DCIFSACKPGPGASKTEGFCLQNSQKHGVPLGEPTTLFWLNVYPQGMWKIIKYIKERYKNTPMFITENGYGEICMPNSST 435 (532)
Q Consensus 356 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~w~~i~P~GL~~~L~~~~~rY~~~PI~ITENG~~~~~~~~~~~ 435 (532)
+ ..|..+...|+++.+. +.||.|||.-+...+...
T Consensus 216 -------------------------------------~---~~~~~i~~~l~~~~~~--Gl~i~ITElDv~~~~~~~--- 250 (320)
T PF00331_consen 216 -------------------------------------G---YPPEQIWNALDRFASL--GLPIHITELDVRDDDNPP--- 250 (320)
T ss_dssp -------------------------------------T---SSHHHHHHHHHHHHTT--TSEEEEEEEEEESSSTTS---
T ss_pred -------------------------------------C---CCHHHHHHHHHHHHHc--CCceEEEeeeecCCCCCc---
Confidence 0 0167899999998654 589999999988765210
Q ss_pred CCccCchhhHHHHHHHHHHHHHHHHcCCCeEEEEeecccccccccCCCCC-ccceEEecCCCCcccccchHHHHHH
Q 009535 436 EDLLNDVKRVEYMASYLDALITAVRDGADVRGYFVWSLLDSFEWTYGYTA-RFGLHHVDFATLKRTPKLSATWYKH 510 (532)
Q Consensus 436 ~g~i~D~~Ri~yl~~hl~~v~~Ai~dGv~V~GY~~WSl~Dn~EW~~Gy~~-rfGL~~VD~~~~~R~pK~S~~~y~~ 510 (532)
..-.+..+.+++++.+..+.+.-.+ .|.|.+.|.+.|+.+|-..... +=+|+. ..-+|||+++.+.+
T Consensus 251 -~~~~~~~qA~~~~~~~~~~~~~~~~--~v~git~Wg~~D~~sW~~~~~~~~~~lfd-----~~~~~Kpa~~~~~~ 318 (320)
T PF00331_consen 251 -DAEEEEAQAEYYRDFLTACFSHPPA--AVEGITWWGFTDGYSWRPDTPPDRPLLFD-----EDYQPKPAYDAIVD 318 (320)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHTTHC--TEEEEEESSSBTTGSTTGGHSEG--SSB------TTSBB-HHHHHHHH
T ss_pred -chHHHHHHHHHHHHHHHHHHhCCcc--CCCEEEEECCCCCCcccCCCCCCCCeeEC-----CCcCCCHHHHHHHh
Confidence 0122567777888777666665322 8999999999999999875322 335553 34578999887765
No 19
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.03 E-value=3.9e-08 Score=110.54 Aligned_cols=265 Identities=20% Similarity=0.227 Sum_probs=153.1
Q ss_pred hchHHHHHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecCCCCcHhHHH-------
Q 009535 98 HRYLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIED------- 170 (532)
Q Consensus 98 ~ry~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~P~~l~~------- 170 (532)
..+..|+++||++|+|++|+| ..|.. .++++.|-+.||-++.-+.-|....|...
T Consensus 313 ~~~~~d~~l~K~~G~N~vR~s-----h~p~~-------------~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~ 374 (604)
T PRK10150 313 VLNVHDHNLMKWIGANSFRTS-----HYPYS-------------EEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNK 374 (604)
T ss_pred HHHHHHHHHHHHCCCCEEEec-----cCCCC-------------HHHHHHHHhcCcEEEEeccccccccccccccccccc
Confidence 457889999999999999995 23432 36788889999987765533222222210
Q ss_pred hhCCCC----ChhhHHHHHHHHHHHHHHhCC--CceeEEEecCchhhhhcccccCCCCCCCCCCCCCCCCCCCCCchHHH
Q 009535 171 KYGAWL----SPESQEDFGYFADICFKSFGD--RVKYWFTINEPNMQVTLSYRLGCHPPAHCSQPFGNCSQGNSEEEPFI 244 (532)
Q Consensus 171 ~~ggw~----~~~~~~~f~~ya~~~~~~fgd--~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~ 244 (532)
....|. +++..+.+.+-++.+++|+.+ -|-.|.+-||+..- .....
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~~~----------------------------~~~~~ 426 (604)
T PRK10150 375 PKETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSIANEPASR----------------------------EQGAR 426 (604)
T ss_pred ccccccccccchhHHHHHHHHHHHHHHhccCCceEEEEeeccCCCcc----------------------------chhHH
Confidence 001222 356778888989999999988 46799999996310 00011
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCcEEEEeeCceeecCCCCHHHHHHHHHHHHHhccccccceecCCCCHHHHHHHhc
Q 009535 245 AAHNLILSHATAVDIYRTKYQKDQGGSIGIILNTLWFEPISSSTADKLAAERAQSFYMNWFLDPIIYGKYPAEMMNIVGS 324 (532)
Q Consensus 245 ~~hn~llAha~A~~~~r~~~~~~~~gkIGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~~~dp~~~G~yP~~~~~~lg~ 324 (532)
.. +...++++|+.. +.-.|....+... .+ .
T Consensus 427 ~~------~~~l~~~~k~~D---ptR~vt~~~~~~~-~~-------------------------~--------------- 456 (604)
T PRK10150 427 EY------FAPLAELTRKLD---PTRPVTCVNVMFA-TP-------------------------D--------------- 456 (604)
T ss_pred HH------HHHHHHHHHhhC---CCCceEEEecccC-Cc-------------------------c---------------
Confidence 11 123445566643 2333333221100 00 0
Q ss_pred cCCCCCHHHHHHhhcCcceeEeecCcceEEecCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCcccChHHHHH
Q 009535 325 TLPKFSSRDKEKLKQGLDFIGINHYTSTYVQDCIFSACKPGPGASKTEGFCLQNSQKHGVPLGEPTTLFWLNVYPQGMWK 404 (532)
Q Consensus 325 ~lp~ft~ed~~~ikg~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~w~~i~P~GL~~ 404 (532)
...+...+|++|+|.|..-+..... .. .+ -..+..
T Consensus 457 ---------~~~~~~~~Dv~~~N~Y~~wy~~~~~------------------------------~~-----~~-~~~~~~ 491 (604)
T PRK10150 457 ---------TDTVSDLVDVLCLNRYYGWYVDSGD------------------------------LE-----TA-EKVLEK 491 (604)
T ss_pred ---------cccccCcccEEEEcccceecCCCCC------------------------------HH-----HH-HHHHHH
Confidence 0001223799999988653321000 00 00 012445
Q ss_pred HHHHHHHHcCCCCEEEeecCccCCCCCCCCCCCccCchhhHHHHHHHHHHHHHHHHcCCCeEEEEeecccccccccCCC-
Q 009535 405 IIKYIKERYKNTPMFITENGYGEICMPNSSTEDLLNDVKRVEYMASYLDALITAVRDGADVRGYFVWSLLDSFEWTYGY- 483 (532)
Q Consensus 405 ~L~~~~~rY~~~PI~ITENG~~~~~~~~~~~~g~i~D~~Ri~yl~~hl~~v~~Ai~dGv~V~GY~~WSl~Dn~EW~~Gy- 483 (532)
.+....+.| ++|++|||.|.+....-....++.-..++...|+++|+..+. +==.|.|-|.|.++| |.+..|.
T Consensus 492 ~~~~~~~~~-~kP~~isEyg~~~~~~~h~~~~~~~~ee~q~~~~~~~~~~~~----~~p~~~G~~iW~~~D-~~~~~g~~ 565 (604)
T PRK10150 492 ELLAWQEKL-HKPIIITEYGADTLAGLHSMYDDMWSEEYQCAFLDMYHRVFD----RVPAVVGEQVWNFAD-FATSQGIL 565 (604)
T ss_pred HHHHHHHhc-CCCEEEEccCCccccccccCCCCCCCHHHHHHHHHHHHHHHh----cCCceEEEEEEeeec-cCCCCCCc
Confidence 555555667 689999999965422100111112235677777777776544 335899999999999 2222221
Q ss_pred ---CCccceEEecCCCCcccccchHHHHHHHHHh
Q 009535 484 ---TARFGLHHVDFATLKRTPKLSATWYKHFIAK 514 (532)
Q Consensus 484 ---~~rfGL~~VD~~~~~R~pK~S~~~y~~ii~~ 514 (532)
....||+ +..|+||++++.||.+-+.
T Consensus 566 ~~~g~~~Gl~-----~~dr~~k~~~~~~k~~~~~ 594 (604)
T PRK10150 566 RVGGNKKGIF-----TRDRQPKSAAFLLKKRWTG 594 (604)
T ss_pred ccCCCcceeE-----cCCCCChHHHHHHHHHhhc
Confidence 1356776 4568999999999998853
No 20
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=98.91 E-value=6.7e-08 Score=105.84 Aligned_cols=291 Identities=20% Similarity=0.308 Sum_probs=137.5
Q ss_pred hHHHHHHHH-HcCCCeeEec--c--ccceeec-CCCCC--CCChhHHHHHHHHHHHHHHcCCccEEEecCCCCcHhHHHh
Q 009535 100 YLEDIDLME-SLGVNSYRFS--I--SWARILP-KGRFG--DVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDK 171 (532)
Q Consensus 100 y~eDi~l~k-~lG~~~~R~s--i--~W~ri~P-~~~~g--~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~P~~l~~~ 171 (532)
+.+.+..++ ++|++.+||- + +..-... ++. | .+|+ ...|+++|.|+++||+|+|.|-. +|.++...
T Consensus 41 ~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~-~~~~Ynf---~~lD~i~D~l~~~g~~P~vel~f--~p~~~~~~ 114 (486)
T PF01229_consen 41 WQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDED-GIPPYNF---TYLDQILDFLLENGLKPFVELGF--MPMALASG 114 (486)
T ss_dssp HHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETT-EEEEE-----HHHHHHHHHHHHCT-EEEEEE-S--B-GGGBSS
T ss_pred HHHHHHHHHhccCceEEEEEeeccCchhhccccccC-CCCcCCh---HHHHHHHHHHHHcCCEEEEEEEe--chhhhcCC
Confidence 666666665 9999999975 2 3333333 221 3 2898 66799999999999999999975 67665321
Q ss_pred ------hCCCC-ChhhHHHHHHHHHHHH----HHhCC-Cce--eEEEecCchhhhhcccccCCCCCCCCCCCCCCCCCCC
Q 009535 172 ------YGAWL-SPESQEDFGYFADICF----KSFGD-RVK--YWFTINEPNMQVTLSYRLGCHPPAHCSQPFGNCSQGN 237 (532)
Q Consensus 172 ------~ggw~-~~~~~~~f~~ya~~~~----~~fgd-~v~--~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~ 237 (532)
+.|+. .|+..+.+.++++.++ +|||. .|. +|.+||||++..+ |..|.
T Consensus 115 ~~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~~~f-------~~~~~------------ 175 (486)
T PF01229_consen 115 YQTVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPDLKDF-------WWDGT------------ 175 (486)
T ss_dssp --EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TTSTTT-------SGGG-------------
T ss_pred CCccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCCcccc-------cCCCC------------
Confidence 11222 2455666666665555 55553 455 5589999996422 11111
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhccCCCCCcEEEEeeCceeecCCCCHHHHHHHHHHHHHhccccccceecCCCCHH
Q 009535 238 SEEEPFIAAHNLILSHATAVDIYRTKYQKDQGGSIGIILNTLWFEPISSSTADKLAAERAQSFYMNWFLDPIIYGKYPAE 317 (532)
Q Consensus 238 ~~~~~~~~~hn~llAha~A~~~~r~~~~~~~~gkIGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~~~dp~~~G~yP~~ 317 (532)
.+.| ..+..+ +++++|+.. |..|||-.-. . .+... ....|
T Consensus 176 --~~ey---~~ly~~---~~~~iK~~~---p~~~vGGp~~-----~--~~~~~-----~~~~~----------------- 215 (486)
T PF01229_consen 176 --PEEY---FELYDA---TARAIKAVD---PELKVGGPAF-----A--WAYDE-----WCEDF----------------- 215 (486)
T ss_dssp --HHHH---HHHHHH---HHHHHHHH----TTSEEEEEEE-----E--TT-TH-----HHHHH-----------------
T ss_pred --HHHH---HHHHHH---HHHHHHHhC---CCCcccCccc-----c--ccHHH-----HHHHH-----------------
Confidence 1212 233333 455666654 6889986410 0 00000 01111
Q ss_pred HHHHHhccCCCCCHHHHHHhhcCcceeEeecCcceEEecCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCccc
Q 009535 318 MMNIVGSTLPKFSSRDKEKLKQGLDFIGINHYTSTYVQDCIFSACKPGPGASKTEGFCLQNSQKHGVPLGEPTTLFWLNV 397 (532)
Q Consensus 318 ~~~~lg~~lp~ft~ed~~~ikg~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~w~~i 397 (532)
++++..+ .-++|||.+..|......... + .... .. . .-..+
T Consensus 216 -l~~~~~~------------~~~~DfiS~H~y~~~~~~~~~-------------~-~~~~-------~~---~--~~~~~ 256 (486)
T PF01229_consen 216 -LEFCKGN------------NCPLDFISFHSYGTDSAEDIN-------------E-NMYE-------RI---E--DSRRL 256 (486)
T ss_dssp -HHHHHHC------------T---SEEEEEEE-BESESE-S-------------S--EEE-------EB-------HHHH
T ss_pred -HHHHhcC------------CCCCCEEEEEecccccccccc-------------h-hHHh-------hh---h--hHHHH
Confidence 1111111 124799999999754321100 0 0000 00 0 00011
Q ss_pred ChHHHHHHHHHHHHH-cCCCCEEEeecCccCCCCCCCCCCCccCc-hhhHHHHHHHHHHHHHHHHcCCCeEEEEeecccc
Q 009535 398 YPQGMWKIIKYIKER-YKNTPMFITENGYGEICMPNSSTEDLLND-VKRVEYMASYLDALITAVRDGADVRGYFVWSLLD 475 (532)
Q Consensus 398 ~P~GL~~~L~~~~~r-Y~~~PI~ITENG~~~~~~~~~~~~g~i~D-~~Ri~yl~~hl~~v~~Ai~dGv~V~GY~~WSl~D 475 (532)
.| .+..+...+.+. +++.|+++||-+..... ...++| .++..|+... ++. .+|..+-++.+|++.|
T Consensus 257 ~~-~~~~~~~~~~~e~~p~~~~~~tE~n~~~~~------~~~~~dt~~~aA~i~k~---lL~--~~~~~l~~~sywt~sD 324 (486)
T PF01229_consen 257 FP-ELKETRPIINDEADPNLPLYITEWNASISP------RNPQHDTCFKAAYIAKN---LLS--NDGAFLDSFSYWTFSD 324 (486)
T ss_dssp HH-HHHHHHHHHHTSSSTT--EEEEEEES-SST------T-GGGGSHHHHHHHHH----HHH--HGGGT-SEEEES-SBS
T ss_pred HH-HHHHHHHHHhhccCCCCceeecccccccCC------CcchhccccchhhHHHH---HHH--hhhhhhhhhhccchhh
Confidence 22 244443333332 45678999996654432 123455 3455444332 222 2566677788999999
Q ss_pred cccccCC----CCCccceEEecCCCCcccccchHHHHHHH
Q 009535 476 SFEWTYG----YTARFGLHHVDFATLKRTPKLSATWYKHF 511 (532)
Q Consensus 476 n~EW~~G----y~~rfGL~~VD~~~~~R~pK~S~~~y~~i 511 (532)
.||=..- +.--|||+..+ .++|+|.+.|+-+
T Consensus 325 ~Fee~~~~~~pf~ggfGLlt~~-----gI~KPa~~A~~~L 359 (486)
T PF01229_consen 325 RFEENGTPRKPFHGGFGLLTKL-----GIPKPAYYAFQLL 359 (486)
T ss_dssp ---TTSS-SSSSSS-S-SEECC-----CEE-HHHHHHHHH
T ss_pred hhhccCCCCCceecchhhhhcc-----CCCchHHHHHHHH
Confidence 9984221 33458998755 7899998887654
No 21
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=98.70 E-value=5.5e-06 Score=83.93 Aligned_cols=272 Identities=17% Similarity=0.182 Sum_probs=157.9
Q ss_pred ccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEE-Ee-cCCCCcHhHHHhhCCCCChhhHHHHHHHHHHHHHHh
Q 009535 118 SISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFV-TL-TQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSF 195 (532)
Q Consensus 118 si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~piv-tL-~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~f 195 (532)
-.-|.-|+|+. |.+|+++- |.+++-+++|||.--- || .|--.|.|+.. .-+..+...+...++-..|++||
T Consensus 66 emKwe~i~p~~--G~f~Fe~A---D~ia~FAr~h~m~lhGHtLvW~~q~P~W~~~--~e~~~~~~~~~~e~hI~tV~~rY 138 (345)
T COG3693 66 EMKWEAIEPER--GRFNFEAA---DAIANFARKHNMPLHGHTLVWHSQVPDWLFG--DELSKEALAKMVEEHIKTVVGRY 138 (345)
T ss_pred ccccccccCCC--CccCccch---HHHHHHHHHcCCeeccceeeecccCCchhhc--cccChHHHHHHHHHHHHHHHHhc
Confidence 34688899977 99999664 8999999999997332 22 25567999963 34777899999999999999999
Q ss_pred CCCceeEEEecCchhhhhcccccCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhccCCCCCcEEEE
Q 009535 196 GDRVKYWFTINEPNMQVTLSYRLGCHPPAHCSQPFGNCSQGNSEEEPFIAAHNLILSHATAVDIYRTKYQKDQGGSIGII 275 (532)
Q Consensus 196 gd~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAha~A~~~~r~~~~~~~~gkIGi~ 275 (532)
.+.|..|=+.|||-- ...++-...|.-+.. ..+. +.+ |.+.-|+. .|++|.-+.
T Consensus 139 kg~~~sWDVVNE~vd-d~g~~R~s~w~~~~~------------gpd~------I~~----aF~~Area---dP~AkL~~N 192 (345)
T COG3693 139 KGSVASWDVVNEAVD-DQGSLRRSAWYDGGT------------GPDY------IKL----AFHIAREA---DPDAKLVIN 192 (345)
T ss_pred cCceeEEEecccccC-CCchhhhhhhhccCC------------ccHH------HHH----HHHHHHhh---CCCceEEee
Confidence 999999999999864 222222222222111 1221 222 34444553 367766442
Q ss_pred eeCceeecCCCCHHHHHHHHHHHHHhccccccceecCCCCHHHHHHHhccCCCCCHHHHHHhhc-CcceeEeecCcceEE
Q 009535 276 LNTLWFEPISSSTADKLAAERAQSFYMNWFLDPIIYGKYPAEMMNIVGSTLPKFSSRDKEKLKQ-GLDFIGINHYTSTYV 354 (532)
Q Consensus 276 ~~~~~~~P~~~~~~D~~aa~~~~~~~~~~~~dp~~~G~yP~~~~~~lg~~lp~ft~ed~~~ikg-~~DFlGiNyYt~~~v 354 (532)
--. ...+|....... .|++.|. -+| ++|=||++-- +
T Consensus 193 DY~-----ie~~~~kr~~~~---------------------nlI~~Lk-------------ekG~pIDgiG~QsH----~ 229 (345)
T COG3693 193 DYS-----IEGNPAKRNYVL---------------------NLIEELK-------------EKGAPIDGIGIQSH----F 229 (345)
T ss_pred ccc-----ccCChHHHHHHH---------------------HHHHHHH-------------HCCCCccceeeeee----e
Confidence 211 112221111100 0122221 123 4788887643 1
Q ss_pred ecCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCcccChHHHHHHHHHHHHHcCCCCEEEeecCccCCCCCCCC
Q 009535 355 QDCIFSACKPGPGASKTEGFCLQNSQKHGVPLGEPTTLFWLNVYPQGMWKIIKYIKERYKNTPMFITENGYGEICMPNSS 434 (532)
Q Consensus 355 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~w~~i~P~GL~~~L~~~~~rY~~~PI~ITENG~~~~~~~~~~ 434 (532)
+- +| .. ++-.+..+....+. +.||+|||--|.... +.
T Consensus 230 ~~------------------------------------~~-~~-~~~~~~a~~~~~k~--Gl~i~VTELD~~~~~-P~-- 266 (345)
T COG3693 230 SG------------------------------------DG-PS-IEKMRAALLKFSKL--GLPIYVTELDMSDYT-PD-- 266 (345)
T ss_pred cC------------------------------------CC-CC-HHHHHHHHHHHhhc--CCCceEEEeeeeccC-CC--
Confidence 10 11 01 12233344344333 589999999887743 10
Q ss_pred CCCccCchhhHHHHHHHH--HHHHHHHHcCCCeEEEEeecccccccccCCCCCccce-EEecCCCCcccccchHHHHHHH
Q 009535 435 TEDLLNDVKRVEYMASYL--DALITAVRDGADVRGYFVWSLLDSFEWTYGYTARFGL-HHVDFATLKRTPKLSATWYKHF 511 (532)
Q Consensus 435 ~~g~i~D~~Ri~yl~~hl--~~v~~Ai~dGv~V~GY~~WSl~Dn~EW~~Gy~~rfGL-~~VD~~~~~R~pK~S~~~y~~i 511 (532)
. +..|-.-.+... +.-....+..-.|.+.+.|.++|+++|..|..+|++= --.=+ +-.=+||+..++..++
T Consensus 267 -~----~~p~~~~~~~~~~~~~f~~~~~~~~~v~~it~WGi~D~ySWl~g~~~~~~~~rPl~~-D~n~~pKPa~~aI~e~ 340 (345)
T COG3693 267 -S----GAPRLYLQKAASRAKAFLLLLLNPNQVKAITFWGITDRYSWLRGRDPRRDGLRPLLF-DDNYQPKPAYKAIAEV 340 (345)
T ss_pred -C----ccHHHHHHHHHHHHHHHHHHHhcccccceEEEeeeccCcccccCCccCcCCCCCccc-CCCCCcchHHHHHHHH
Confidence 1 223332222221 1222223456779999999999999999998888851 00001 2234699999998876
Q ss_pred HHh
Q 009535 512 IAK 514 (532)
Q Consensus 512 i~~ 514 (532)
.+.
T Consensus 341 la~ 343 (345)
T COG3693 341 LAP 343 (345)
T ss_pred hcC
Confidence 654
No 22
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.30 E-value=1.1e-06 Score=98.25 Aligned_cols=119 Identities=18% Similarity=0.299 Sum_probs=90.5
Q ss_pred chHHHHHHHHHcCCCeeEec-cccceeecCCCCCCCChhHHHHHHHH-HHHHHHcCCccEEEe-cCCCCcHhHHHh----
Q 009535 99 RYLEDIDLMESLGVNSYRFS-ISWARILPKGRFGDVNSEGINHYNKL-IDALLLKGIQPFVTL-TQFDSPQEIEDK---- 171 (532)
Q Consensus 99 ry~eDi~l~k~lG~~~~R~s-i~W~ri~P~~~~g~~n~~~l~~y~~~-i~~l~~~gi~pivtL-~H~~~P~~l~~~---- 171 (532)
-|++|+++||++|+|++|.+ ++|++++|+. |++|+. +.|.. |+.+.+.||.+++.- .....|.|+..+
T Consensus 31 ~w~ddl~~mk~~G~N~V~ig~faW~~~eP~e--G~fdf~---~~D~~~l~~a~~~Gl~vil~t~P~g~~P~Wl~~~~Pei 105 (673)
T COG1874 31 TWMDDLRKMKALGLNTVRIGYFAWNLHEPEE--GKFDFT---WLDEIFLERAYKAGLYVILRTGPTGAPPAWLAKKYPEI 105 (673)
T ss_pred HHHHHHHHHHHhCCCeeEeeeEEeeccCccc--cccCcc---cchHHHHHHHHhcCceEEEecCCCCCCchHHhcCChhh
Confidence 48899999999999999995 4999999999 999996 56777 999999999999988 778889999865
Q ss_pred -----------hCCCCChhhHH-HHHHHHHH----HHHH-hCC--CceeEEEecCchh-hhhcccccCCCC
Q 009535 172 -----------YGAWLSPESQE-DFGYFADI----CFKS-FGD--RVKYWFTINEPNM-QVTLSYRLGCHP 222 (532)
Q Consensus 172 -----------~ggw~~~~~~~-~f~~ya~~----~~~~-fgd--~v~~w~t~NEp~~-~~~~gy~~g~~~ 222 (532)
.|+|.+-.... .+..|++. +++| ||+ .|-.|.+-||-.. .+++.|+...|+
T Consensus 106 L~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dneY~~~~~~~~~~~~~f~ 176 (673)
T COG1874 106 LAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDNEYGGHPCYCDYCQAAFR 176 (673)
T ss_pred eEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccCccCCccccccccHHHHH
Confidence 35664422222 34555554 8888 776 5788999998665 444444444443
No 23
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.27 E-value=0.00017 Score=72.28 Aligned_cols=304 Identities=17% Similarity=0.281 Sum_probs=169.0
Q ss_pred CCCCCCCCCcEEeeeccc-ccccCCcCCCCCccccccccccCCCCccCCCCCCccchhhhchHHHHHHHHHcCCCeeEec
Q 009535 40 LDPSPFPSNFLFGTSTSS-YQVEGAYVSEGKGLSNWDVFTHTPGNIDDGSSGDVAVDHYHRYLEDIDLMESLGVNSYRFS 118 (532)
Q Consensus 40 ~~~~~fP~~FlwG~atsa-~Q~EG~~~~~g~~~s~wd~~~~~~~~~~~~~~~~~a~d~y~ry~eDi~l~k~lG~~~~R~s 118 (532)
+.....|++|+.|+-.|. +|+|-. ..+..+ .++. -++=++.||+.|+|.+|+-
T Consensus 30 ~~v~~~~~dFikGaDis~l~~lE~~-----------------Gvkf~d-~ng~--------~qD~~~iLK~~GvNyvRlR 83 (403)
T COG3867 30 FPVENSPNDFIKGADISSLIELENS-----------------GVKFFD-TNGV--------RQDALQILKNHGVNYVRLR 83 (403)
T ss_pred eeccCChHHhhccccHHHHHHHHHc-----------------CceEEc-cCCh--------HHHHHHHHHHcCcCeEEEE
Confidence 344678999999987554 566642 111111 1111 1344799999999999996
Q ss_pred cccceeecCCCCC------CCChhHHHHHHHHHHHHHHcCCccEEEec---CCCCcHhHHHhhCCCCC---hhhHHHHHH
Q 009535 119 ISWARILPKGRFG------DVNSEGINHYNKLIDALLLKGIQPFVTLT---QFDSPQEIEDKYGAWLS---PESQEDFGY 186 (532)
Q Consensus 119 i~W~ri~P~~~~g------~~n~~~l~~y~~~i~~l~~~gi~pivtL~---H~~~P~~l~~~~ggw~~---~~~~~~f~~ 186 (532)
| |- -|....| .=|- +---++-..++++||++++..| ||.=|..-. +...|.+ .....+.-+
T Consensus 84 v-wn--dP~dsngn~yggGnnD~---~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ~-kPkaW~~l~fe~lk~avy~ 156 (403)
T COG3867 84 V-WN--DPYDSNGNGYGGGNNDL---KKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQK-KPKAWENLNFEQLKKAVYS 156 (403)
T ss_pred E-ec--CCccCCCCccCCCcchH---HHHHHHHHHHHhcCcEEEeeccchhhccChhhcC-CcHHhhhcCHHHHHHHHHH
Confidence 5 11 1211112 2233 3345777888999999999998 466665432 3356766 233445556
Q ss_pred HHHHHHHHh---CCCceeEEEecCchhhhhcccccCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHh
Q 009535 187 FADICFKSF---GDRVKYWFTINEPNMQVTLSYRLGCHPPAHCSQPFGNCSQGNSEEEPFIAAHNLILSHATAVDIYRTK 263 (532)
Q Consensus 187 ya~~~~~~f---gd~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAha~A~~~~r~~ 263 (532)
|.+.+...+ |-....-.+=||-+- |+ .||-|... .+.-+-.++.| +++++|+.
T Consensus 157 yTk~~l~~m~~eGi~pdmVQVGNEtn~----gf---lwp~Ge~~--------------~f~k~a~L~n~---g~~avrev 212 (403)
T COG3867 157 YTKYVLTTMKKEGILPDMVQVGNETNG----GF---LWPDGEGR--------------NFDKMAALLNA---GIRAVREV 212 (403)
T ss_pred HHHHHHHHHHHcCCCccceEeccccCC----ce---eccCCCCc--------------ChHHHHHHHHH---Hhhhhhhc
Confidence 666666665 445666677799662 11 25544321 23333445554 66677775
Q ss_pred ccCCCCCcEEEEeeCceeecCCCCHHHHHHHHHHHHHhccccccceecCCCCHHHHHHHhccCCCCCHHHHHHhhcCcce
Q 009535 264 YQKDQGGSIGIILNTLWFEPISSSTADKLAAERAQSFYMNWFLDPIIYGKYPAEMMNIVGSTLPKFSSRDKEKLKQGLDF 343 (532)
Q Consensus 264 ~~~~~~gkIGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~~~dp~~~G~yP~~~~~~lg~~lp~ft~ed~~~ikg~~DF 343 (532)
. +.-+|-+.+. .|..++. .+|+.|-+. .-.-..|.
T Consensus 213 ~---p~ikv~lHla----~g~~n~~-------------y~~~fd~lt-------------------------k~nvdfDV 247 (403)
T COG3867 213 S---PTIKVALHLA----EGENNSL-------------YRWIFDELT-------------------------KRNVDFDV 247 (403)
T ss_pred C---CCceEEEEec----CCCCCch-------------hhHHHHHHH-------------------------HcCCCceE
Confidence 3 5555554433 2333221 123322222 12235799
Q ss_pred eEeecCcceEEecCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCcccChHHHHHHHHHHHHHcCCCCEEEeec
Q 009535 344 IGINHYTSTYVQDCIFSACKPGPGASKTEGFCLQNSQKHGVPLGEPTTLFWLNVYPQGMWKIIKYIKERYKNTPMFITEN 423 (532)
Q Consensus 344 lGiNyYt~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~w~~i~P~GL~~~L~~~~~rY~~~PI~ITEN 423 (532)
||.+||+ ++. | + + ..|...|..+..||+ +.+||.|.
T Consensus 248 ig~SyYp--yWh---------------------------g----t--------l--~nL~~nl~dia~rY~-K~VmV~Et 283 (403)
T COG3867 248 IGSSYYP--YWH---------------------------G----T--------L--NNLTTNLNDIASRYH-KDVMVVET 283 (403)
T ss_pred Eeeeccc--ccc---------------------------C----c--------H--HHHHhHHHHHHHHhc-CeEEEEEe
Confidence 9999993 111 0 0 1 157888899999996 56999998
Q ss_pred CccCCCCC-----C-CCCCC-----ccCchhhHHHHHHHHHHHHHHHHcCCCeEEEEeeccccccc-ccCCCCCccceEE
Q 009535 424 GYGEICMP-----N-SSTED-----LLNDVKRVEYMASYLDALITAVRDGADVRGYFVWSLLDSFE-WTYGYTARFGLHH 491 (532)
Q Consensus 424 G~~~~~~~-----~-~~~~g-----~i~D~~Ri~yl~~hl~~v~~Ai~dGv~V~GY~~WSl~Dn~E-W~~Gy~~rfGL~~ 491 (532)
+.+.--++ . .+..+ .+.=+-+..++++-++.|..- -+.+=.|.|+|-.-=+.. -.+|+...||.-|
T Consensus 284 ay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~nv--p~~~GlGvFYWEp~wipv~~g~gwat~~~~~y 361 (403)
T COG3867 284 AYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKNV--PKSNGLGVFYWEPAWIPVVLGSGWATSYAAKY 361 (403)
T ss_pred cceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHhC--CCCCceEEEEecccceeccCCCccccchhhcc
Confidence 87322110 0 00111 111134566777766655543 455678999997654444 3445555555544
No 24
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=98.02 E-value=0.00036 Score=71.60 Aligned_cols=92 Identities=18% Similarity=0.193 Sum_probs=62.8
Q ss_pred hhchHHHHHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecCCCCcHhHHHhhC---
Q 009535 97 YHRYLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYG--- 173 (532)
Q Consensus 97 y~ry~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~P~~l~~~~g--- 173 (532)
...++.|+++||+||+|++|++- .|.. .++++.|-+.||-++.-+.....-.|-. .|
T Consensus 35 ~~~~~~d~~l~k~~G~N~iR~~h-----~p~~-------------~~~~~~cD~~GilV~~e~~~~~~~~~~~--~~~~~ 94 (298)
T PF02836_consen 35 DEAMERDLELMKEMGFNAIRTHH-----YPPS-------------PRFYDLCDELGILVWQEIPLEGHGSWQD--FGNCN 94 (298)
T ss_dssp HHHHHHHHHHHHHTT-SEEEETT-----S--S-------------HHHHHHHHHHT-EEEEE-S-BSCTSSSS--TSCTS
T ss_pred HHHHHHHHHHHHhcCcceEEccc-----ccCc-------------HHHHHHHhhcCCEEEEeccccccCcccc--CCccc
Confidence 46789999999999999999843 1222 3667788899998887664321111110 01
Q ss_pred -CCCChhhHHHHHHHHHHHHHHhCC--CceeEEEecCc
Q 009535 174 -AWLSPESQEDFGYFADICFKSFGD--RVKYWFTINEP 208 (532)
Q Consensus 174 -gw~~~~~~~~f~~ya~~~~~~fgd--~v~~w~t~NEp 208 (532)
--.++...+.+.+-++.+++++.+ -|-.|.+.||+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 95 YDADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp CTTTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred cCCCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 013578888898889999999977 68999999997
No 25
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=97.85 E-value=4.7e-05 Score=81.72 Aligned_cols=110 Identities=19% Similarity=0.175 Sum_probs=80.4
Q ss_pred HHHHHHHHHcCCCeeEeccccceeecCC--CCCCCChhHHHHHHHHHHHHHHcCCccEEEecCCCCcHhHHHhh---CCC
Q 009535 101 LEDIDLMESLGVNSYRFSISWARILPKG--RFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKY---GAW 175 (532)
Q Consensus 101 ~eDi~l~k~lG~~~~R~si~W~ri~P~~--~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~P~~l~~~~---ggw 175 (532)
++|+..||+.|+|++|+.|.|-.+.+.. .....+...+.+.+++|+.+++.||.+++.||+..-..--.+.. +.+
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~~~s~~~~~~ 155 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNGHEHSGYTSDY 155 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCCcCcccccccc
Confidence 8999999999999999999855555432 10223244456899999999999999999999866322222211 112
Q ss_pred C-ChhhHHHHHHHHHHHHHHhCCC--ceeEEEecCchh
Q 009535 176 L-SPESQEDFGYFADICFKSFGDR--VKYWFTINEPNM 210 (532)
Q Consensus 176 ~-~~~~~~~f~~ya~~~~~~fgd~--v~~w~t~NEp~~ 210 (532)
. ....++.+.+-.+.++.||++. |--..++|||+.
T Consensus 156 ~~~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 156 KEENENVEATIDIWKFIANRFKNYDTVIGFELINEPNG 193 (407)
T ss_pred cccchhHHHHHHHHHHHHHhccCCCceeeeeeecCCcc
Confidence 2 3567799999999999999882 333568899985
No 26
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=97.45 E-value=0.00048 Score=71.60 Aligned_cols=108 Identities=15% Similarity=0.172 Sum_probs=71.5
Q ss_pred chHHHHHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEec---C--C---CCcHhHHH
Q 009535 99 RYLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLT---Q--F---DSPQEIED 170 (532)
Q Consensus 99 ry~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~---H--~---~~P~~l~~ 170 (532)
.|++-++.||++|+|++-+-|.|.-.||.+ |++|+++..=.+++|+.++++||.+++-.- | | ++|.||..
T Consensus 25 ~W~~~l~k~ka~G~n~v~~yv~W~~he~~~--g~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~aE~~~gG~P~Wl~~ 102 (319)
T PF01301_consen 25 YWRDRLQKMKAAGLNTVSTYVPWNLHEPEE--GQFDFTGNRDLDRFLDLAQENGLYVILRPGPYICAEWDNGGLPAWLLR 102 (319)
T ss_dssp GHHHHHHHHHHTT-SEEEEE--HHHHSSBT--TB---SGGG-HHHHHHHHHHTT-EEEEEEES---TTBGGGG--GGGGG
T ss_pred HHHHHHHHHHhCCcceEEEeccccccCCCC--CcccccchhhHHHHHHHHHHcCcEEEecccceecccccchhhhhhhhc
Confidence 588999999999999999999999999998 999999987889999999999999776432 1 3 38999986
Q ss_pred hhCCC---CChhhHHHHHHHHHHHHHHhCC-------CceeEEEecCc
Q 009535 171 KYGAW---LSPESQEDFGYFADICFKSFGD-------RVKYWFTINEP 208 (532)
Q Consensus 171 ~~ggw---~~~~~~~~f~~ya~~~~~~fgd-------~v~~w~t~NEp 208 (532)
+.+.. .++...++..+|.+.+++...+ -|-.-.+=||.
T Consensus 103 ~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEy 150 (319)
T PF01301_consen 103 KPDIRLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEY 150 (319)
T ss_dssp STTS-SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSG
T ss_pred cccccccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhh
Confidence 63332 2355666666666666666533 23344455663
No 27
>PLN03059 beta-galactosidase; Provisional
Probab=97.35 E-value=0.0026 Score=72.85 Aligned_cols=95 Identities=12% Similarity=0.088 Sum_probs=77.9
Q ss_pred chHHHHHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEec--------CCCCcHhHHH
Q 009535 99 RYLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLT--------QFDSPQEIED 170 (532)
Q Consensus 99 ry~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~--------H~~~P~~l~~ 170 (532)
.|++=|+.||++|+|++-.=|.|.-.||.+ |++|++|..=..++|+.+.+.||-+|+-.- .-++|.||..
T Consensus 60 ~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~--G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~ 137 (840)
T PLN03059 60 MWPDLIQKAKDGGLDVIQTYVFWNGHEPSP--GNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKY 137 (840)
T ss_pred HHHHHHHHHHHcCCCeEEEEecccccCCCC--CeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhc
Confidence 588889999999999999999999999998 999999999999999999999998777442 3468999975
Q ss_pred hhCCC----CChhhHHHHHHHHHHHHHHhC
Q 009535 171 KYGAW----LSPESQEDFGYFADICFKSFG 196 (532)
Q Consensus 171 ~~ggw----~~~~~~~~f~~ya~~~~~~fg 196 (532)
. .|. .++.+.++-.+|.+.+++...
T Consensus 138 ~-~~i~~Rs~d~~fl~~v~~~~~~l~~~l~ 166 (840)
T PLN03059 138 V-PGIEFRTDNGPFKAAMQKFTEKIVDMMK 166 (840)
T ss_pred C-CCcccccCCHHHHHHHHHHHHHHHHHHh
Confidence 4 343 345666666777777777663
No 28
>PLN02161 beta-amylase
Probab=96.59 E-value=0.0095 Score=64.26 Aligned_cols=111 Identities=13% Similarity=0.164 Sum_probs=87.4
Q ss_pred chhhhchHHHHHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEec-CC----------
Q 009535 94 VDHYHRYLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLT-QF---------- 162 (532)
Q Consensus 94 ~d~y~ry~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~-H~---------- 162 (532)
..+..-.+..++.||.+|++.+-+.+=|-.+|++++ +++|| ..|+++++.+++.|++..+.|. |-
T Consensus 113 v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p-~~YdW---sgY~~l~~mvr~~GLKlq~vmSFHqCGGNvGd~~~ 188 (531)
T PLN02161 113 IKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFSP-LEFKW---SLYEELFRLISEAGLKLHVALCFHSNMHLFGGKGG 188 (531)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCC-CcCCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCccC
Confidence 567777899999999999999999999999999887 99999 7799999999999999777765 32
Q ss_pred -CCcHhHHHh-----------hCC----------------CCChhhHHHHHHHHHHHHHHhCCCceeEEEecCchh
Q 009535 163 -DSPQEIEDK-----------YGA----------------WLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNM 210 (532)
Q Consensus 163 -~~P~~l~~~-----------~gg----------------w~~~~~~~~f~~ya~~~~~~fgd~v~~w~t~NEp~~ 210 (532)
-+|.|+.+. ..| +..+.-++.+.+|.+-..++|.+... -|+.|..+
T Consensus 189 IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~~~--~~I~eI~V 262 (531)
T PLN02161 189 ISLPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSTKFEPYIG--NVIEEISI 262 (531)
T ss_pred ccCCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEEe
Confidence 489998752 012 22233557888888888888877654 36666543
No 29
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=96.56 E-value=0.013 Score=58.33 Aligned_cols=66 Identities=20% Similarity=0.243 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHcCCCCEEEeecCccCCCCCCCCCCCccCchhhHHHHHHHHHHHHHHHHcCCCeEEEEeeccccccc
Q 009535 401 GMWKIIKYIKERYKNTPMFITENGYGEICMPNSSTEDLLNDVKRVEYMASYLDALITAVRDGADVRGYFVWSLLDSFE 478 (532)
Q Consensus 401 GL~~~L~~~~~rY~~~PI~ITENG~~~~~~~~~~~~g~i~D~~Ri~yl~~hl~~v~~Ai~dGv~V~GY~~WSl~Dn~E 478 (532)
++...|..++++|+ +||+|||.|+..... .-.++...+|+++-+..+.+ --.|.+|++.+.++..+
T Consensus 152 ~~~~~i~~~~~~~~-kPIWITEf~~~~~~~-------~~~~~~~~~fl~~~~~~ld~----~~~VeryawF~~~~~~~ 217 (239)
T PF11790_consen 152 DFKDYIDDLHNRYG-KPIWITEFGCWNGGS-------QGSDEQQASFLRQALPWLDS----QPYVERYAWFGFMNDGS 217 (239)
T ss_pred HHHHHHHHHHHHhC-CCEEEEeecccCCCC-------CCCHHHHHHHHHHHHHHHhc----CCCeeEEEecccccccC
Confidence 68889999999997 899999999865211 12356666777666666544 36899999999555444
No 30
>PLN02803 beta-amylase
Probab=96.53 E-value=0.0099 Score=64.47 Aligned_cols=107 Identities=14% Similarity=0.191 Sum_probs=83.9
Q ss_pred hchHHHHHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEec-C-----------CCCc
Q 009535 98 HRYLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLT-Q-----------FDSP 165 (532)
Q Consensus 98 ~ry~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~-H-----------~~~P 165 (532)
.-.+..++.||++|++.+-+.+=|-.+|++++ +++|| ..|+++++.+++.|++..+.|. | --+|
T Consensus 107 ~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p-~~YdW---sgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP 182 (548)
T PLN02803 107 RAMNASLMALRSAGVEGVMVDAWWGLVEKDGP-MKYNW---EGYAELVQMVQKHGLKLQVVMSFHQCGGNVGDSCSIPLP 182 (548)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeeeeeccCCC-CcCCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCC
Confidence 44788999999999999999999999999986 99999 7799999999999999777665 3 2589
Q ss_pred HhHHHh-----------hCC----------------CCChhhHHHHHHHHHHHHHHhCCCceeEEEecCchh
Q 009535 166 QEIEDK-----------YGA----------------WLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNM 210 (532)
Q Consensus 166 ~~l~~~-----------~gg----------------w~~~~~~~~f~~ya~~~~~~fgd~v~~w~t~NEp~~ 210 (532)
.|+.+. .-| +..+.-++.+.+|.+-....|.+... -|+.|..+
T Consensus 183 ~WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~--~~I~eI~V 252 (548)
T PLN02803 183 PWVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKDYLG--GVIAEIQV 252 (548)
T ss_pred HHHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEEe
Confidence 998753 011 22234457788888888888877654 46777553
No 31
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=96.47 E-value=0.0057 Score=64.68 Aligned_cols=106 Identities=17% Similarity=0.277 Sum_probs=80.4
Q ss_pred hhchHHHHHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEec-C-----------CCC
Q 009535 97 YHRYLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLT-Q-----------FDS 164 (532)
Q Consensus 97 y~ry~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~-H-----------~~~ 164 (532)
+.-.+.+++.||++|++.+-+.+=|..+|+.++ +++|+ ..|+++.+.+++.|++..+.|. | .-+
T Consensus 15 ~~~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p-~~ydW---s~Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpL 90 (402)
T PF01373_consen 15 WNALEAQLRALKSAGVDGVMVDVWWGIVEGEGP-QQYDW---SGYRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPL 90 (402)
T ss_dssp CHHHHHHHHHHHHTTEEEEEEEEEHHHHTGSST-TB------HHHHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeEeeeeccCCC-CccCc---HHHHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcC
Confidence 337899999999999999999999999999976 99999 7799999999999999888763 3 368
Q ss_pred cHhHHHh-----------hCC--------CCChhhHHHHHHHHHHHHHHhCCCceeEEEecCch
Q 009535 165 PQEIEDK-----------YGA--------WLSPESQEDFGYFADICFKSFGDRVKYWFTINEPN 209 (532)
Q Consensus 165 P~~l~~~-----------~gg--------w~~~~~~~~f~~ya~~~~~~fgd~v~~w~t~NEp~ 209 (532)
|.|+.++ .|. |....+++.+.+|-+-..++|.+.. -|+-|..
T Consensus 91 P~Wv~~~~~~~di~ytd~~G~rn~E~lSp~~~grt~~~Y~dfm~sF~~~f~~~~---~~I~~I~ 151 (402)
T PF01373_consen 91 PSWVWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRTLQCYSDFMRSFRDNFSDYL---STITEIQ 151 (402)
T ss_dssp -HHHHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBCHHHHHHHHHHHHHHCHHHH---TGEEEEE
T ss_pred CHHHHhccccCCcEEECCCCCcCcceeecccCCchHHHHHHHHHHHHHHHHHHH---hhheEEE
Confidence 9998643 222 4444459999999999999997765 4555543
No 32
>PLN00197 beta-amylase; Provisional
Probab=96.46 E-value=0.012 Score=64.14 Aligned_cols=107 Identities=15% Similarity=0.220 Sum_probs=84.1
Q ss_pred hchHHHHHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEec-C-----------CCCc
Q 009535 98 HRYLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLT-Q-----------FDSP 165 (532)
Q Consensus 98 ~ry~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~-H-----------~~~P 165 (532)
.-.+..++.||.+|++.+-+.+=|-.+|++++ ++||| ..|+++++.+++.|++..+.|. | --+|
T Consensus 127 ~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p-~~YdW---sgY~~L~~mvr~~GLKlq~VmSFHqCGGNVGD~~~IpLP 202 (573)
T PLN00197 127 KAMKASLQALKSAGVEGIMMDVWWGLVERESP-GVYNW---GGYNELLEMAKRHGLKVQAVMSFHQCGGNVGDSCTIPLP 202 (573)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeeeccCCC-CcCCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCC
Confidence 35788999999999999999999999999987 99999 7799999999999999777765 3 2599
Q ss_pred HhHHHh-----------hCC----------------CCChhhHHHHHHHHHHHHHHhCCCceeEEEecCchh
Q 009535 166 QEIEDK-----------YGA----------------WLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNM 210 (532)
Q Consensus 166 ~~l~~~-----------~gg----------------w~~~~~~~~f~~ya~~~~~~fgd~v~~w~t~NEp~~ 210 (532)
.|+.+. ..| +..+.-++.+.+|.+-...+|.+... -|+.|..+
T Consensus 203 ~WV~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~--~~I~eI~V 272 (573)
T PLN00197 203 KWVVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFKHLLG--DTIVEIQV 272 (573)
T ss_pred HHHHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHHHHHHhc--CceeEEEe
Confidence 998753 011 22233368888888888888887655 36667553
No 33
>PLN02801 beta-amylase
Probab=96.41 E-value=0.018 Score=62.30 Aligned_cols=107 Identities=13% Similarity=0.218 Sum_probs=82.3
Q ss_pred hchHHHHHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEec-C-----------CCCc
Q 009535 98 HRYLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLT-Q-----------FDSP 165 (532)
Q Consensus 98 ~ry~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~-H-----------~~~P 165 (532)
.-.+..++.||++|++.+-+.+=|-.+|.+++ +++|| ..|+++++.+++.|++..+.|. | .-+|
T Consensus 37 ~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P-~~YdW---sgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP 112 (517)
T PLN02801 37 EGLEKQLKRLKEAGVDGVMVDVWWGIVESKGP-KQYDW---SAYRSLFELVQSFGLKIQAIMSFHQCGGNVGDAVNIPIP 112 (517)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeeeccCCC-CccCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCC
Confidence 34788999999999999999999999999986 99999 7799999999999999776664 3 3589
Q ss_pred HhHHHh-----------hCC----------------CCChhhHHHHHHHHHHHHHHhCCCceeEEEecCch
Q 009535 166 QEIEDK-----------YGA----------------WLSPESQEDFGYFADICFKSFGDRVKYWFTINEPN 209 (532)
Q Consensus 166 ~~l~~~-----------~gg----------------w~~~~~~~~f~~ya~~~~~~fgd~v~~w~t~NEp~ 209 (532)
.|+.+. ..| +..+.-++.+.+|.+-..++|.+...- -|+.|..
T Consensus 113 ~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~~-~~I~eI~ 182 (517)
T PLN02801 113 QWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMADFLEA-GVIIDIE 182 (517)
T ss_pred HHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHHhccC-CeeEEEE
Confidence 998753 011 222345688899998888888775421 2444543
No 34
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=96.19 E-value=0.009 Score=62.92 Aligned_cols=100 Identities=21% Similarity=0.325 Sum_probs=56.1
Q ss_pred HHcCCCeeEecc---cc------------ceee--cCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecCCCCcHhHHH
Q 009535 108 ESLGVNSYRFSI---SW------------ARIL--PKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIED 170 (532)
Q Consensus 108 k~lG~~~~R~si---~W------------~ri~--P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~P~~l~~ 170 (532)
+.||++.+|+.| ++ .|.+ +..+ |.+|+.+=+-=+.++++++++|+..++ ++-+..|.|+..
T Consensus 57 ~GlGLSI~RyNIGgGs~~~~d~~~i~~~~rr~e~f~~~d-g~yDW~~D~gQrwfL~~Ak~rGV~~f~-aFSNSPP~~MT~ 134 (384)
T PF14587_consen 57 KGLGLSIWRYNIGGGSAEQGDSSGIRDPWRRAESFLPAD-GSYDWDADAGQRWFLKAAKERGVNIFE-AFSNSPPWWMTK 134 (384)
T ss_dssp -S---S-EEEE---STTTTTTSS--SSSTT----SB-TT-S-B-TTSSHHHHHHHHHHHHTT---EE-EE-SSS-GGGSS
T ss_pred CCceeeeeeeccccCCcccccCccCCCcccCCccccCCC-CCcCCCCCHHHHHHHHHHHHcCCCeEE-EeecCCCHHHhc
Confidence 358999999987 33 3332 2222 777775544556699999999999766 667788888864
Q ss_pred hhC----C-----CCChhhHHHHHHHHHHHHHHh---CCCceeEEEecCchh
Q 009535 171 KYG----A-----WLSPESQEDFGYFADICFKSF---GDRVKYWFTINEPNM 210 (532)
Q Consensus 171 ~~g----g-----w~~~~~~~~f~~ya~~~~~~f---gd~v~~w~t~NEp~~ 210 (532)
. | + =+.++..+.|++|-..|+++| |-.+++-.++|||..
T Consensus 135 N-G~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~ 185 (384)
T PF14587_consen 135 N-GSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQW 185 (384)
T ss_dssp S-SSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS
T ss_pred C-CCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCC
Confidence 2 2 1 145788999999999999999 337899999999983
No 35
>PLN02905 beta-amylase
Probab=96.09 E-value=0.035 Score=61.19 Aligned_cols=102 Identities=12% Similarity=0.196 Sum_probs=81.0
Q ss_pred chhhhchHHHHHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEec-C-----------
Q 009535 94 VDHYHRYLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLT-Q----------- 161 (532)
Q Consensus 94 ~d~y~ry~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~-H----------- 161 (532)
.....-.+..++.||.+|++.+-+.+=|-.+|++++ ++||| ..|.++++.+++.|++..+.|. |
T Consensus 282 l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP-~~YdW---sgY~~L~~mvr~~GLKlqvVMSFHqCGGNVGD~~~ 357 (702)
T PLN02905 282 LADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAP-QEYNW---NGYKRLFQMVRELKLKLQVVMSFHECGGNVGDDVC 357 (702)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCC-CcCCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCccc
Confidence 456677889999999999999999999999999987 99999 7799999999999999777765 3
Q ss_pred CCCcHhHHHh-----------hCC----------------CCChhhHHHHHHHHHHHHHHhCCCc
Q 009535 162 FDSPQEIEDK-----------YGA----------------WLSPESQEDFGYFADICFKSFGDRV 199 (532)
Q Consensus 162 ~~~P~~l~~~-----------~gg----------------w~~~~~~~~f~~ya~~~~~~fgd~v 199 (532)
--+|.|+.+. ..| ...+.-++.+.+|.+-+...|.+..
T Consensus 358 IPLP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl 422 (702)
T PLN02905 358 IPLPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEFF 422 (702)
T ss_pred ccCCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 2599998753 011 1223445788888888888886643
No 36
>PLN02705 beta-amylase
Probab=96.01 E-value=0.038 Score=60.74 Aligned_cols=100 Identities=14% Similarity=0.114 Sum_probs=78.9
Q ss_pred hhhchHHHHHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEec-C-----------CC
Q 009535 96 HYHRYLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLT-Q-----------FD 163 (532)
Q Consensus 96 ~y~ry~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~-H-----------~~ 163 (532)
+-.-.+..++.||.+|++.+-+.+=|-.+|.+++ ++||| ..|.++++.+++.|++..+.|. | --
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P-~~YdW---sgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IP 341 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNP-QKYVW---SGYRELFNIIREFKLKLQVVMAFHEYGGNASGNVMIS 341 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCC-CcCCc---HHHHHHHHHHHHcCCeEEEEEEeeccCCCCCCccccc
Confidence 3455888999999999999999999999999886 99999 7799999999999999777664 3 25
Q ss_pred CcHhHHHh-----------hCC----------------CCChhhHHHHHHHHHHHHHHhCCCc
Q 009535 164 SPQEIEDK-----------YGA----------------WLSPESQEDFGYFADICFKSFGDRV 199 (532)
Q Consensus 164 ~P~~l~~~-----------~gg----------------w~~~~~~~~f~~ya~~~~~~fgd~v 199 (532)
+|.|+.+. .-| ...+.-++.+.+|.+-+.+.|.+..
T Consensus 342 LP~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl 404 (681)
T PLN02705 342 LPQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDLF 404 (681)
T ss_pred CCHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 89998753 011 1223445888888888888887743
No 37
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=95.73 E-value=0.055 Score=55.49 Aligned_cols=104 Identities=15% Similarity=0.250 Sum_probs=64.2
Q ss_pred hHHHHHHHHHcCCCeeEecc--cccee--------ec--CCCC-----CCCChhHHHHHHHHHHHHHHcCCccEEEecCC
Q 009535 100 YLEDIDLMESLGVNSYRFSI--SWARI--------LP--KGRF-----GDVNSEGINHYNKLIDALLLKGIQPFVTLTQF 162 (532)
Q Consensus 100 y~eDi~l~k~lG~~~~R~si--~W~ri--------~P--~~~~-----g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~ 162 (532)
++.-++..|+-|+|.+|+.+ .|... .| ..+. ..+|++=.++.+++|+.|.++||+|.+.+.|
T Consensus 32 ~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~w- 110 (289)
T PF13204_consen 32 WEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGIEAALVPFW- 110 (289)
T ss_dssp HHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-EEEEESS--
T ss_pred HHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEEE-
Confidence 44557889999999999998 44433 11 1100 1389999999999999999999999876654
Q ss_pred CCcHhHHHhhCCCCC---hhhHHHHHHHHHHHHHHhCCC-ceeEEEecCc
Q 009535 163 DSPQEIEDKYGAWLS---PESQEDFGYFADICFKSFGDR-VKYWFTINEP 208 (532)
Q Consensus 163 ~~P~~l~~~~ggw~~---~~~~~~f~~ya~~~~~~fgd~-v~~w~t~NEp 208 (532)
+.|. .+ +.|-. .-..+.-.+|.+.|++||+.. =..|+.=||-
T Consensus 111 g~~~---~~-~~Wg~~~~~m~~e~~~~Y~~yv~~Ry~~~~NviW~l~gd~ 156 (289)
T PF13204_consen 111 GCPY---VP-GTWGFGPNIMPPENAERYGRYVVARYGAYPNVIWILGGDY 156 (289)
T ss_dssp HHHH---H--------TTSS-HHHHHHHHHHHHHHHTT-SSEEEEEESSS
T ss_pred CCcc---cc-ccccccccCCCHHHHHHHHHHHHHHHhcCCCCEEEecCcc
Confidence 2221 12 44533 334788899999999999998 4789988884
No 38
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=95.43 E-value=0.26 Score=50.64 Aligned_cols=48 Identities=27% Similarity=0.416 Sum_probs=34.0
Q ss_pred chHHHHHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecC
Q 009535 99 RYLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQ 161 (532)
Q Consensus 99 ry~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H 161 (532)
-.+.||.+||+||+|++|+= -|-|.. | +++-...|.+.||-++++|.-
T Consensus 54 ~C~rDi~~l~~LgiNtIRVY----~vdp~~-----n------Hd~CM~~~~~aGIYvi~Dl~~ 101 (314)
T PF03198_consen 54 ACKRDIPLLKELGINTIRVY----SVDPSK-----N------HDECMSAFADAGIYVILDLNT 101 (314)
T ss_dssp HHHHHHHHHHHHT-SEEEES-------TTS-------------HHHHHHHHHTT-EEEEES-B
T ss_pred HHHHhHHHHHHcCCCEEEEE----EeCCCC-----C------HHHHHHHHHhCCCEEEEecCC
Confidence 57899999999999999973 223332 1 477888899999999999953
No 39
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=94.33 E-value=0.15 Score=56.81 Aligned_cols=109 Identities=13% Similarity=0.094 Sum_probs=84.6
Q ss_pred chHHHHHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEec--------CCCCcHhHHH
Q 009535 99 RYLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLT--------QFDSPQEIED 170 (532)
Q Consensus 99 ry~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~--------H~~~P~~l~~ 170 (532)
.|++=|+.+|++|+|++-.=+.|.-.+|.+ |++|++|.-=..++|..+.++|+-+++-+- +=.+|.||..
T Consensus 50 ~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~--g~y~FsG~~DlvkFikl~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~ 127 (649)
T KOG0496|consen 50 MWPDLIKKAKAGGLNVIQTYVFWNLHEPSP--GKYDFSGRYDLVKFIKLIHKAGLYVILRIGPYICAEWNFGGLPWWLRN 127 (649)
T ss_pred hhHHHHHHHHhcCCceeeeeeecccccCCC--CcccccchhHHHHHHHHHHHCCeEEEecCCCeEEecccCCCcchhhhh
Confidence 588889999999999999999999999999 999999987788899999999986555332 4567988876
Q ss_pred hhCCC---CChhhHHHHHHHHHHHHHHhC-------CCceeEEEecCch
Q 009535 171 KYGAW---LSPESQEDFGYFADICFKSFG-------DRVKYWFTINEPN 209 (532)
Q Consensus 171 ~~ggw---~~~~~~~~f~~ya~~~~~~fg-------d~v~~w~t~NEp~ 209 (532)
.-|.- .|+.+..++.+|.+.++...+ .=|-.-.+=||-.
T Consensus 128 ~pg~~~Rt~nepfk~~~~~~~~~iv~~mk~L~~~qGGPIIl~QIENEYG 176 (649)
T KOG0496|consen 128 VPGIVFRTDNEPFKAEMERWTTKIVPMMKKLFASQGGPIILVQIENEYG 176 (649)
T ss_pred CCceEEecCChHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEeechhh
Confidence 52321 467888888999998888543 2234444557765
No 40
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=93.95 E-value=0.33 Score=45.66 Aligned_cols=102 Identities=19% Similarity=0.332 Sum_probs=64.5
Q ss_pred chHHHHHHHHHcCCCeeEeccccceee-----cCCC-CCCCChhHHHHHHHHHHHHHHcCCccEEEecCCCCcHhHHHhh
Q 009535 99 RYLEDIDLMESLGVNSYRFSISWARIL-----PKGR-FGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKY 172 (532)
Q Consensus 99 ry~eDi~l~k~lG~~~~R~si~W~ri~-----P~~~-~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~P~~l~~~~ 172 (532)
+|+++++.|+++|++++=+- |+... |..- .+.+.....+..+.+++++.+.||+++|.|+. -|.|...
T Consensus 21 ~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~--~~~~w~~-- 94 (166)
T PF14488_consen 21 QWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYF--DPDYWDQ-- 94 (166)
T ss_pred HHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCC--Cchhhhc--
Confidence 69999999999999998533 44332 2210 01222234477899999999999999999984 3445542
Q ss_pred CCCCChh-hHHHHHHHHHHHHHHhCCC--ceeEEEecCch
Q 009535 173 GAWLSPE-SQEDFGYFADICFKSFGDR--VKYWFTINEPN 209 (532)
Q Consensus 173 ggw~~~~-~~~~f~~ya~~~~~~fgd~--v~~w~t~NEp~ 209 (532)
.+.+ -++.=..-++.+.++||.. +.-|-.-.|+.
T Consensus 95 ---~~~~~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~ 131 (166)
T PF14488_consen 95 ---GDLDWEAERNKQVADELWQRYGHHPSFYGWYIPYEID 131 (166)
T ss_pred ---cCHHHHHHHHHHHHHHHHHHHcCCCCCceEEEecccC
Confidence 1211 2223344677788888873 34455555543
No 41
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=92.79 E-value=0.36 Score=57.92 Aligned_cols=94 Identities=14% Similarity=0.016 Sum_probs=63.8
Q ss_pred hhhchHHHHHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecCCCCcHhHHHhhCCC
Q 009535 96 HYHRYLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAW 175 (532)
Q Consensus 96 ~y~ry~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~P~~l~~~~ggw 175 (532)
....++.||++||++|+|++|+| ..|.. .++.+.|-+.||-++--..-.....+... ...
T Consensus 369 t~e~~~~di~lmK~~g~NaVR~s-----HyP~~-------------p~fydlcDe~GilV~dE~~~e~hg~~~~~--~~~ 428 (1027)
T PRK09525 369 DEETMVQDILLMKQHNFNAVRCS-----HYPNH-------------PLWYELCDRYGLYVVDEANIETHGMVPMN--RLS 428 (1027)
T ss_pred CHHHHHHHHHHHHHCCCCEEEec-----CCCCC-------------HHHHHHHHHcCCEEEEecCccccCCcccc--CCC
Confidence 45678999999999999999995 33433 24567788899977765421000000000 011
Q ss_pred CChhhHHHHHHHHHHHHHHhCC--CceeEEEecCch
Q 009535 176 LSPESQEDFGYFADICFKSFGD--RVKYWFTINEPN 209 (532)
Q Consensus 176 ~~~~~~~~f~~ya~~~~~~fgd--~v~~w~t~NEp~ 209 (532)
.+++..+.+.+=++.+++|.++ -|-.|...||+.
T Consensus 429 ~dp~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 429 DDPRWLPAMSERVTRMVQRDRNHPSIIIWSLGNESG 464 (1027)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCC
Confidence 3466677777778899999988 478999999974
No 42
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=92.18 E-value=0.55 Score=54.63 Aligned_cols=89 Identities=19% Similarity=0.152 Sum_probs=67.4
Q ss_pred hhhhchHHHHHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecCCCCcHhHHHhhCC
Q 009535 95 DHYHRYLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGA 174 (532)
Q Consensus 95 d~y~ry~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~P~~l~~~~gg 174 (532)
-.+..++.|+++||++|+|++|.| -.|+. .+..+.|-+.||=++=...+ +- +|.
T Consensus 318 ~~~~~~~~dl~lmk~~n~N~vRts-----HyP~~-------------~~~ydLcDelGllV~~Ea~~-----~~---~~~ 371 (808)
T COG3250 318 TDEDAMERDLKLMKEANMNSVRTS-----HYPNS-------------EEFYDLCDELGLLVIDEAMI-----ET---HGM 371 (808)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEec-----CCCCC-------------HHHHHHHHHhCcEEEEecch-----hh---cCC
Confidence 345569999999999999999998 55665 35667777889977665443 21 244
Q ss_pred CCChhhHHHHHHHHHHHHHHhCC--CceeEEEecCch
Q 009535 175 WLSPESQEDFGYFADICFKSFGD--RVKYWFTINEPN 209 (532)
Q Consensus 175 w~~~~~~~~f~~ya~~~~~~fgd--~v~~w~t~NEp~ 209 (532)
..+++..+....=++++++|-++ .|-.|..=||.+
T Consensus 372 ~~~~~~~k~~~~~i~~mver~knHPSIiiWs~gNE~~ 408 (808)
T COG3250 372 PDDPEWRKEVSEEVRRMVERDRNHPSIIIWSLGNESG 408 (808)
T ss_pred CCCcchhHHHHHHHHHHHHhccCCCcEEEEecccccc
Confidence 46677777788888999999877 578999999965
No 43
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=92.02 E-value=0.5 Score=56.71 Aligned_cols=91 Identities=18% Similarity=0.196 Sum_probs=62.8
Q ss_pred hhchHHHHHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEe----cCCCCcHhHHHhh
Q 009535 97 YHRYLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTL----TQFDSPQEIEDKY 172 (532)
Q Consensus 97 y~ry~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL----~H~~~P~~l~~~~ 172 (532)
...++.||++||++|+|++|+| ..|.. ..+.+.|-+.||-++--. +.|.....+. +
T Consensus 354 ~e~~~~dl~lmK~~g~NavR~s-----HyP~~-------------~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~--~ 413 (1021)
T PRK10340 354 MDRVEKDIQLMKQHNINSVRTA-----HYPND-------------PRFYELCDIYGLFVMAETDVESHGFANVGDIS--R 413 (1021)
T ss_pred HHHHHHHHHHHHHCCCCEEEec-----CCCCC-------------HHHHHHHHHCCCEEEECCcccccCcccccccc--c
Confidence 5678999999999999999996 34543 256778888999766643 1121110000 0
Q ss_pred CCCCChhhHHHHHHHHHHHHHHhCC--CceeEEEecCc
Q 009535 173 GAWLSPESQEDFGYFADICFKSFGD--RVKYWFTINEP 208 (532)
Q Consensus 173 ggw~~~~~~~~f~~ya~~~~~~fgd--~v~~w~t~NEp 208 (532)
...++...+.|.+=++.+++|.++ -|-.|..-||.
T Consensus 414 -~~~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~ 450 (1021)
T PRK10340 414 -ITDDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNES 450 (1021)
T ss_pred -ccCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCc
Confidence 012345667777778999999988 47899999997
No 44
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=84.66 E-value=1.6 Score=46.41 Aligned_cols=99 Identities=20% Similarity=0.264 Sum_probs=70.7
Q ss_pred HHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecCCCCcHhHHHhhCCC-CCh-hhHHHH
Q 009535 107 MESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAW-LSP-ESQEDF 184 (532)
Q Consensus 107 ~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~P~~l~~~~ggw-~~~-~~~~~f 184 (532)
-+|+|++-.|.---|.-++.. =-+++ .++++++|.+...|+.=+.+-.||+.+.-....+.+= ..+ ...+.+
T Consensus 14 ~~Ei~v~yi~~~~v~h~~~q~---~~~~~---t~~d~i~d~~~~~~~~~ie~~l~~~~l~~~~~~wq~n~~~~~~~~dl~ 87 (428)
T COG3664 14 DDEIQVNYIRRHGVWHVNAQK---LFYPF---TYIDEIIDTLLDLGLDLIELFLIWNNLNTKEHQWQLNVDDPKSVFDLI 87 (428)
T ss_pred hhhhceeeehhcceeeeeecc---ccCCh---HHHHHHHHHHHHhccHHHHHhhcccchhhhhhhcccccCCcHhHHHHH
Confidence 468899999998888833332 24666 8899999999999955445666777775544333232 223 478999
Q ss_pred HHHHHHHHHHhCCC-ceeE--EEecCchhh
Q 009535 185 GYFADICFKSFGDR-VKYW--FTINEPNMQ 211 (532)
Q Consensus 185 ~~ya~~~~~~fgd~-v~~w--~t~NEp~~~ 211 (532)
+++++.|+.++|-+ |.-| ..+||||..
T Consensus 88 ~~fl~h~~~~vg~e~v~kw~f~~~~~pn~~ 117 (428)
T COG3664 88 AAFLKHVIRRVGVEFVRKWPFYSPNEPNLL 117 (428)
T ss_pred HHHHHHHHHHhChhheeecceeecCCCCcc
Confidence 99999999999963 3333 577999965
No 45
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=83.54 E-value=6.5 Score=40.42 Aligned_cols=87 Identities=25% Similarity=0.421 Sum_probs=60.9
Q ss_pred hhchHHHHHHHHHcCCCeeEecc---ccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecCCCCcHhHHHhhC
Q 009535 97 YHRYLEDIDLMESLGVNSYRFSI---SWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYG 173 (532)
Q Consensus 97 y~ry~eDi~l~k~lG~~~~R~si---~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~P~~l~~~~g 173 (532)
..||.+--++++++|+|.+-+.= .-..+ ..+-++-..++-+.++..||++.+++. |.-|.-+ |
T Consensus 56 ~~R~~~YARllASiGINgvvlNNVNa~~~~L---------t~~~l~~v~~lAdvfRpYGIkv~LSvn-FasP~~l----g 121 (328)
T PF07488_consen 56 LTRYRDYARLLASIGINGVVLNNVNANPKLL---------TPEYLDKVARLADVFRPYGIKVYLSVN-FASPIEL----G 121 (328)
T ss_dssp -HHHHHHHHHHHHTT--EEE-S-SS--CGGG---------STTTHHHHHHHHHHHHHTT-EEEEEE--TTHHHHT----T
T ss_pred hhHHHHHHHHHhhcCCceEEecccccChhhc---------CHHHHHHHHHHHHHHhhcCCEEEEEee-ccCCccc----C
Confidence 35899999999999999986532 12222 223456678999999999999999996 6777654 5
Q ss_pred CC-----CChhhHHHHHHHHHHHHHHhCC
Q 009535 174 AW-----LSPESQEDFGYFADICFKSFGD 197 (532)
Q Consensus 174 gw-----~~~~~~~~f~~ya~~~~~~fgd 197 (532)
|. ++++++..+.+=++.+.++..|
T Consensus 122 gL~TaDPld~~V~~WW~~k~~eIY~~IPD 150 (328)
T PF07488_consen 122 GLPTADPLDPEVRQWWKDKADEIYSAIPD 150 (328)
T ss_dssp S-S---TTSHHHHHHHHHHHHHHHHH-TT
T ss_pred CcCcCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 53 5689999999999999998866
No 46
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=82.78 E-value=5.8 Score=40.37 Aligned_cols=118 Identities=14% Similarity=0.194 Sum_probs=73.3
Q ss_pred ccccccccccCCCCccCCCCCCccchhhhchHHHHHHHHHcCCCeeEeccccceeecCCCCC---CCChhHHHHHHHHHH
Q 009535 70 GLSNWDVFTHTPGNIDDGSSGDVAVDHYHRYLEDIDLMESLGVNSYRFSISWARILPKGRFG---DVNSEGINHYNKLID 146 (532)
Q Consensus 70 ~~s~wd~~~~~~~~~~~~~~~~~a~d~y~ry~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g---~~n~~~l~~y~~~i~ 146 (532)
|.+.|+.|...... ..+..+.--+.++++=|+.++++|+..+=+.--|+.-.+..... .... ....++++
T Consensus 8 Gk~~W~Ww~~~~~~----~~~~~~g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~---~dl~elv~ 80 (273)
T PF10566_consen 8 GKAAWSWWSMHNGK----GVGFKHGATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPD---FDLPELVD 80 (273)
T ss_dssp EEEEECTCCCCTTS----SBSS-BSSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT-----HHHHHH
T ss_pred ceEEEeecccCCCC----CCCCcCCCCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCc---cCHHHHHH
Confidence 45677777653222 11223444678899999999999999999999998733222101 1122 34589999
Q ss_pred HHHHcCCccEEEecCCC------CcHhHHH------hhC---------CCCChhhHHHHHHHHHHHHHH
Q 009535 147 ALLLKGIQPFVTLTQFD------SPQEIED------KYG---------AWLSPESQEDFGYFADICFKS 194 (532)
Q Consensus 147 ~l~~~gi~pivtL~H~~------~P~~l~~------~~g---------gw~~~~~~~~f~~ya~~~~~~ 194 (532)
..+++|+.+++-.+|-+ +=.-+.+ +.| +-.+...++.+.+.++.++++
T Consensus 81 Ya~~KgVgi~lw~~~~~~~~~~~~~~~~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA~~ 149 (273)
T PF10566_consen 81 YAKEKGVGIWLWYHSETGGNVANLEKQLDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWYEDILEDAAEY 149 (273)
T ss_dssp HHHHTT-EEEEEEECCHTTBHHHHHCCHHHHHHHHHHCTEEEEEEE--SSTSHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCEEEEEeCCcchhhHhHHHHHHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHHHHHHHHHHHc
Confidence 99999999999998755 2111111 111 124567788888888888775
No 47
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=82.70 E-value=0.51 Score=50.85 Aligned_cols=109 Identities=15% Similarity=0.093 Sum_probs=79.8
Q ss_pred hHHHHHHHHHcCCCeeEecccc-ceeecCCCCCCCChhH-HHHHHHHHHHHHHcCCccEEEec----CCCCcHhHHHhh-
Q 009535 100 YLEDIDLMESLGVNSYRFSISW-ARILPKGRFGDVNSEG-INHYNKLIDALLLKGIQPFVTLT----QFDSPQEIEDKY- 172 (532)
Q Consensus 100 y~eDi~l~k~lG~~~~R~si~W-~ri~P~~~~g~~n~~~-l~~y~~~i~~l~~~gi~pivtL~----H~~~P~~l~~~~- 172 (532)
.+.|++.++.+|++..|++|-= ...--. +|..|.+. +.+.+.+++.+.+.+|+.++||. |+.-=.|...=.
T Consensus 28 i~~dle~a~~vg~k~lR~fiLDgEdc~d~--~G~~na~s~~~y~~~fla~a~~l~lkvlitlivg~~hmgg~Nw~Ipwag 105 (587)
T COG3934 28 IKADLEPAGFVGVKDLRLFILDGEDCRDK--EGYRNAGSNVWYAAWFLAPAGYLDLKVLITLIVGLKHMGGTNWRIPWAG 105 (587)
T ss_pred hhcccccccCccceeEEEEEecCcchhhh--hceecccccHHHHHHHhhhcccCcceEEEEEeecccccCcceeEeecCC
Confidence 4578899999999999999532 222122 27788777 89999999999999999999986 433222211000
Q ss_pred -----CCCCChhhHHHHHHHHHHHHHHhCC--CceeEEEecCchh
Q 009535 173 -----GAWLSPESQEDFGYFADICFKSFGD--RVKYWFTINEPNM 210 (532)
Q Consensus 173 -----ggw~~~~~~~~f~~ya~~~~~~fgd--~v~~w~t~NEp~~ 210 (532)
.-...+++..-|.+|++.+++.|+- -+.-|+.=|||.+
T Consensus 106 ~~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv 150 (587)
T COG3934 106 EQSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLV 150 (587)
T ss_pred CCCccccccchhhcccHHHHHHHHhhhhccChHHHHHHhcCCccc
Confidence 1234578888999999999998876 4577999999766
No 48
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=81.77 E-value=2.3 Score=44.09 Aligned_cols=82 Identities=24% Similarity=0.450 Sum_probs=40.5
Q ss_pred HHHHHHHHHHH--cCCCCEEEeecCccCCCCCCCCCCCccCchhhHHHHHHHHHHHHHHHHcCCCeE-----EEEeeccc
Q 009535 402 MWKIIKYIKER--YKNTPMFITENGYGEICMPNSSTEDLLNDVKRVEYMASYLDALITAVRDGADVR-----GYFVWSLL 474 (532)
Q Consensus 402 L~~~L~~~~~r--Y~~~PI~ITENG~~~~~~~~~~~~g~i~D~~Ri~yl~~hl~~v~~Ai~dGv~V~-----GY~~WSl~ 474 (532)
+.+.+...-++ |+++||+|||+||+...+. + --..==+.+.+.+.+.+.+|.+.+ -+++-+++
T Consensus 212 ~~da~~~a~~~~g~~~~~vvv~ETGWPs~G~~-----~-----a~~~nA~~~~~nl~~~~~~gt~~~~~~~~~~y~F~~F 281 (310)
T PF00332_consen 212 MVDAVYAAMEKLGFPNVPVVVGETGWPSAGDP-----G-----ATPENAQAYNQNLIKHVLKGTPLRPGNGIDVYIFEAF 281 (310)
T ss_dssp HHHHHHHHHHTTT-TT--EEEEEE---SSSST-----T-----CSHHHHHHHHHHHHHHCCGBBSSSBSS---EEES-SB
T ss_pred HHHHHHHHHHHhCCCCceeEEeccccccCCCC-----C-----CCcchhHHHHHHHHHHHhCCCcccCCCCCeEEEEEEe
Confidence 34444455454 4578999999999987631 0 011112445555666655665543 46778888
Q ss_pred ccccccCC--CCCccceEEecC
Q 009535 475 DSFEWTYG--YTARFGLHHVDF 494 (532)
Q Consensus 475 Dn~EW~~G--y~~rfGL~~VD~ 494 (532)
|- .|..| .++.|||++-|.
T Consensus 282 dE-~~K~~~~~E~~wGlf~~d~ 302 (310)
T PF00332_consen 282 DE-NWKPGPEVERHWGLFYPDG 302 (310)
T ss_dssp ---TTSSSSGGGGG--SB-TTS
T ss_pred cC-cCCCCCcccceeeeECCCC
Confidence 84 55555 578999998663
No 49
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.03 E-value=6.7 Score=42.58 Aligned_cols=112 Identities=22% Similarity=0.343 Sum_probs=73.4
Q ss_pred hhchHHHHHHHHHcCCCeeEec------------------------------cccceeecCCC-CCCCChhH----HHHH
Q 009535 97 YHRYLEDIDLMESLGVNSYRFS------------------------------ISWARILPKGR-FGDVNSEG----INHY 141 (532)
Q Consensus 97 y~ry~eDi~l~k~lG~~~~R~s------------------------------i~W~ri~P~~~-~g~~n~~~----l~~y 141 (532)
|.+|+..|+.|+=.|+|..=.. +.|.|+=.-.. .|...++. +-.=
T Consensus 77 w~qWeR~iDWmALnGinl~la~~gQEaIWqkVf~~lgl~~eeldeyftgpAflAW~RMGNl~awgGpLs~aw~~~ql~Lq 156 (666)
T KOG2233|consen 77 WEQWEREIDWMALNGINLVLAPLGQEAIWQKVFMGLGLQREELDEYFTGPAFLAWHRMGNLHAWGGPLSPAWMLNQLLLQ 156 (666)
T ss_pred hHHHHhHhhHHHHcCcceeeccchhHHHHHHHHHHcCCCHHHHHHhcccHHHHHHHHhcCccccCCCCCHHHHHHHHHHH
Confidence 6799999999999999976433 23444411100 02222211 2223
Q ss_pred HHHHHHHHHcCCccEEEecCCCCcHhHHHhh--------CCC---------------CChhhHHHHHHHHHHHHHHhCCC
Q 009535 142 NKLIDALLLKGIQPFVTLTQFDSPQEIEDKY--------GAW---------------LSPESQEDFGYFADICFKSFGDR 198 (532)
Q Consensus 142 ~~~i~~l~~~gi~pivtL~H~~~P~~l~~~~--------ggw---------------~~~~~~~~f~~ya~~~~~~fgd~ 198 (532)
.++|+.+++-||+|++--+--..|..|..-+ +-| ..|-+.+.=..|-+...+.||.-
T Consensus 157 krIidrm~~lGmTpvLPaFaG~VP~al~rlfPesnf~rl~rWn~f~s~~~C~l~v~P~dplF~eIgs~Flr~~~kefG~~ 236 (666)
T KOG2233|consen 157 KRIIDRMLELGMTPVLPAFAGHVPDALERLFPESNFTRLPRWNNFTSRYSCMLLVSPFDPLFQEIGSTFLRHQIKEFGGV 236 (666)
T ss_pred HHHHHHHHHcCCCccchhhccccHHHHHHhCchhceeeccccCCCCcceeeeEEccCCcchHHHHHHHHHHHHHHHhCCc
Confidence 6899999999999999888777888876432 222 23556666777888889999973
Q ss_pred ceeEE--EecCc
Q 009535 199 VKYWF--TINEP 208 (532)
Q Consensus 199 v~~w~--t~NEp 208 (532)
-..+. ||||.
T Consensus 237 tniy~~DpFNE~ 248 (666)
T KOG2233|consen 237 TNIYSADPFNEI 248 (666)
T ss_pred ccccccCccccc
Confidence 33333 88883
No 50
>smart00642 Aamy Alpha-amylase domain.
Probab=78.98 E-value=5.5 Score=37.34 Aligned_cols=64 Identities=19% Similarity=0.380 Sum_probs=44.4
Q ss_pred hhhchHHHHHHHHHcCCCeeEeccccceeec--CCCCC-------CCC--hhHHHHHHHHHHHHHHcCCccEEEec
Q 009535 96 HYHRYLEDIDLMESLGVNSYRFSISWARILP--KGRFG-------DVN--SEGINHYNKLIDALLLKGIQPFVTLT 160 (532)
Q Consensus 96 ~y~ry~eDi~l~k~lG~~~~R~si~W~ri~P--~~~~g-------~~n--~~~l~~y~~~i~~l~~~gi~pivtL~ 160 (532)
.+....+-++-+++||++++-++--+..... ... | .+| .-..+=++++|++|+++||++|+.+.
T Consensus 17 ~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~-gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V 91 (166)
T smart00642 17 DLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYH-GYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVV 91 (166)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCC-CcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 3455677788999999999998765544431 110 1 122 11345679999999999999999874
No 51
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=70.77 E-value=9.8 Score=38.85 Aligned_cols=82 Identities=12% Similarity=0.134 Sum_probs=61.2
Q ss_pred HHHHHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecCCCCcHhHHHhhCCCCChhh
Q 009535 101 LEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPES 180 (532)
Q Consensus 101 ~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~P~~l~~~~ggw~~~~~ 180 (532)
+.|++++++.|++.+++.++=|...-....+.--.+.++...++|+.+++.|+++.+++-+|+.|. +..
T Consensus 77 ~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~-----------r~~ 145 (280)
T cd07945 77 DKSVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGM-----------RDS 145 (280)
T ss_pred HHHHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCC-----------cCC
Confidence 568999999999999999855544333211334467889999999999999999999999877664 122
Q ss_pred HHHHHHHHHHHHH
Q 009535 181 QEDFGYFADICFK 193 (532)
Q Consensus 181 ~~~f~~ya~~~~~ 193 (532)
++.+.++++.+.+
T Consensus 146 ~~~~~~~~~~~~~ 158 (280)
T cd07945 146 PDYVFQLVDFLSD 158 (280)
T ss_pred HHHHHHHHHHHHH
Confidence 4667777777654
No 52
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=69.72 E-value=18 Score=32.61 Aligned_cols=58 Identities=16% Similarity=0.125 Sum_probs=38.9
Q ss_pred HHHHHHHHcCCCeeEeccc--cce-eecCCCCC--CCChhHHHHHHHHHHHHHHcCCccEEEecC
Q 009535 102 EDIDLMESLGVNSYRFSIS--WAR-ILPKGRFG--DVNSEGINHYNKLIDALLLKGIQPFVTLTQ 161 (532)
Q Consensus 102 eDi~l~k~lG~~~~R~si~--W~r-i~P~~~~g--~~n~~~l~~y~~~i~~l~~~gi~pivtL~H 161 (532)
+=++.||++|+|+.-+... +-- -.|... | ....+ -+...++|++|+++||++++=+-+
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~-~~~hp~L~-~Dllge~v~a~h~~Girv~ay~~~ 66 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKV-GPRHPGLK-RDLLGEQVEACHERGIRVPAYFDF 66 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCC-CcCCCCCC-cCHHHHHHHHHHHCCCEEEEEEee
Confidence 4468899999999999433 111 123332 2 11122 377899999999999999886643
No 53
>PRK13792 lysozyme inhibitor; Provisional
Probab=68.48 E-value=4 Score=36.66 Aligned_cols=48 Identities=21% Similarity=0.461 Sum_probs=37.7
Q ss_pred HHHHHHHHhhhhhhhcccccccCC---CCCCCCCCCcEEeeecccccccCC
Q 009535 16 ALFLLMMLLSPLFISCDQTTLKQS---LDPSPFPSNFLFGTSTSSYQVEGA 63 (532)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~fP~~FlwG~atsa~Q~EG~ 63 (532)
+||+|++++.+++.+|+...-... .....+|++=.--.-|-.||+|++
T Consensus 4 ~l~~ll~~~~~lLsaCs~~~~~~~~~~~~~l~ip~~~~~~~~tv~YqC~~~ 54 (127)
T PRK13792 4 ALWLLLAAVPVVLVACGGSDDDKQTAQVDYLALPGDAKLDTRSVDYKCENG 54 (127)
T ss_pred HHHHHHHHHHhheecccCCCCCcccccceeeecCCCcccccceEEEECCCC
Confidence 588889999999999999877432 334568887777778889999964
No 54
>PLN02361 alpha-amylase
Probab=68.08 E-value=12 Score=40.22 Aligned_cols=65 Identities=12% Similarity=0.188 Sum_probs=46.6
Q ss_pred hhhhchHHHHHHHHHcCCCeeEeccccceeecCCCCC-----CCCh--hHHHHHHHHHHHHHHcCCccEEEec
Q 009535 95 DHYHRYLEDIDLMESLGVNSYRFSISWARILPKGRFG-----DVNS--EGINHYNKLIDALLLKGIQPFVTLT 160 (532)
Q Consensus 95 d~y~ry~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g-----~~n~--~~l~~y~~~i~~l~~~gi~pivtL~ 160 (532)
.+|....+-++-|++||++++=++=...-.-+.|- . .+|. -..+=++++|++|+++||++|+.+.
T Consensus 26 ~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY-~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~V 97 (401)
T PLN02361 26 DWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGY-LPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADIV 97 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCC-CcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEEc
Confidence 48889999999999999999988765433323221 0 1111 1234579999999999999999764
No 55
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=67.93 E-value=55 Score=32.70 Aligned_cols=73 Identities=22% Similarity=0.279 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHcCCccEEEecC--------------CCCcHhHHH----------------hh-CC---CCChh---hH
Q 009535 139 NHYNKLIDALLLKGIQPFVTLTQ--------------FDSPQEIED----------------KY-GA---WLSPE---SQ 181 (532)
Q Consensus 139 ~~y~~~i~~l~~~gi~pivtL~H--------------~~~P~~l~~----------------~~-gg---w~~~~---~~ 181 (532)
+.++.+|+.-+++|..+|+||-= ...|.|-.. +. ++ ..+|+ ..
T Consensus 24 ~~~~~f~~~~~~~ga~~m~T~pm~G~Vakd~~~~~~~~~fp~~~y~~Q~~~d~~~~~~Gng~~~~~~~~~~~~P~~~~~~ 103 (239)
T PF12891_consen 24 DVADTFIDQNLAAGAYSMMTLPMIGYVAKDANSVSESESFPSWRYGPQQWFDPWNPDCGNGVKPDKTALTSNDPDTPDNP 103 (239)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE--SSEEES-BSEGBGGGTSSSTTEEEBS-EETTEEEEE-SEESTSSS--SSSGGSSSSE
T ss_pred HHHHHHHHHhhhcCcceeEeecccceEecCCCCcccccCCChhhcccccccCcCcCCCCccccCCCCCCCCCCCCCCccH
Confidence 77899999999999999999852 112221100 00 11 11333 11
Q ss_pred HHHHHHHHHHHHHhCCC-----ceeEEEecCchhh
Q 009535 182 EDFGYFADICFKSFGDR-----VKYWFTINEPNMQ 211 (532)
Q Consensus 182 ~~f~~ya~~~~~~fgd~-----v~~w~t~NEp~~~ 211 (532)
.+-.+++..+..+||.. |++|..-|||.+.
T Consensus 104 ~y~~ewV~~l~~~~g~a~~~~gvk~y~lDNEP~LW 138 (239)
T PF12891_consen 104 VYMDEWVNYLVNKYGNASTNGGVKYYSLDNEPDLW 138 (239)
T ss_dssp EEHHHHHHHHHHHH--TTSTTS--EEEESS-GGGH
T ss_pred hHHHHHHHHHHHHHhccccCCCceEEEecCchHhh
Confidence 23345577777787765 9999999999964
No 56
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=66.20 E-value=18 Score=37.00 Aligned_cols=86 Identities=12% Similarity=0.139 Sum_probs=62.0
Q ss_pred hHHHHHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecC-CCCcHhHHHhhCCCCCh
Q 009535 100 YLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQ-FDSPQEIEDKYGAWLSP 178 (532)
Q Consensus 100 y~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H-~~~P~~l~~~~ggw~~~ 178 (532)
-.+|+++..+.|++.+++.++=|...-....+.=-++.++...++|+.++++|+++.+++.. |+.|. .|..
T Consensus 81 ~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~------~~~~-- 152 (287)
T PRK05692 81 NLKGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPY------EGEV-- 152 (287)
T ss_pred CHHHHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCC------CCCC--
Confidence 48999999999999999998655432222114334567888999999999999999887764 55552 3333
Q ss_pred hhHHHHHHHHHHHHHH
Q 009535 179 ESQEDFGYFADICFKS 194 (532)
Q Consensus 179 ~~~~~f~~ya~~~~~~ 194 (532)
..+.+.++++.+.+.
T Consensus 153 -~~~~~~~~~~~~~~~ 167 (287)
T PRK05692 153 -PPEAVADVAERLFAL 167 (287)
T ss_pred -CHHHHHHHHHHHHHc
Confidence 367777888877653
No 57
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=66.08 E-value=12 Score=37.27 Aligned_cols=59 Identities=25% Similarity=0.515 Sum_probs=40.6
Q ss_pred hHHHHHHHHHcCCCeeEeccccceeecCCCCC-------CC--ChhHHHHHHHHHHHHHHcCCccEEEec
Q 009535 100 YLEDIDLMESLGVNSYRFSISWARILPKGRFG-------DV--NSEGINHYNKLIDALLLKGIQPFVTLT 160 (532)
Q Consensus 100 y~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g-------~~--n~~~l~~y~~~i~~l~~~gi~pivtL~ 160 (532)
..+-|+-+|+||++++-++=-+. .|...-| .+ ..-..+=++++|++|.++||++|+++.
T Consensus 6 i~~kLdyl~~lGv~~I~l~Pi~~--~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V 73 (316)
T PF00128_consen 6 IIDKLDYLKDLGVNAIWLSPIFE--SPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVV 73 (316)
T ss_dssp HHHTHHHHHHHTESEEEESS-EE--SSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHhhHHHHHcCCCceecccccc--cccccccccceeeeccccccchhhhhhhhhhccccccceEEEeee
Confidence 35668899999999999885444 1211102 11 122456689999999999999999885
No 58
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=65.60 E-value=20 Score=36.26 Aligned_cols=53 Identities=19% Similarity=0.272 Sum_probs=40.3
Q ss_pred CccchhhhchHHHHHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEec
Q 009535 91 DVAVDHYHRYLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLT 160 (532)
Q Consensus 91 ~~a~d~y~ry~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~ 160 (532)
|-+|..=..|..|+++++.-+. ..|.= | -|... ..++..++.+.|++.++.++
T Consensus 56 dGtCKSa~~~~sDLe~l~~~t~-~IR~Y------------~-sDCn~---le~v~pAa~~~g~kv~lGiw 108 (305)
T COG5309 56 DGTCKSADQVASDLELLASYTH-SIRTY------------G-SDCNT---LENVLPAAEASGFKVFLGIW 108 (305)
T ss_pred CCCCcCHHHHHhHHHHhccCCc-eEEEe------------e-ccchh---hhhhHHHHHhcCceEEEEEe
Confidence 4477788889999999999886 45431 3 34433 47899999999999999874
No 59
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=64.74 E-value=20 Score=36.21 Aligned_cols=60 Identities=18% Similarity=0.241 Sum_probs=45.9
Q ss_pred HHHHHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEec
Q 009535 101 LEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLT 160 (532)
Q Consensus 101 ~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~ 160 (532)
.+|++++.+.|++.+|+.++=|...-....+.=-.+.++...++|..++++|+++.+++-
T Consensus 74 ~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~e 133 (262)
T cd07948 74 MDDARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSE 133 (262)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 679999999999999998865443222211322356788999999999999999999885
No 60
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=64.53 E-value=17 Score=38.28 Aligned_cols=85 Identities=13% Similarity=0.085 Sum_probs=63.1
Q ss_pred hHHHHHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecC-CCCcHhHHHhhCCCCCh
Q 009535 100 YLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQ-FDSPQEIEDKYGAWLSP 178 (532)
Q Consensus 100 y~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H-~~~P~~l~~~~ggw~~~ 178 (532)
=.+|++++.+.|++.+.+.++=|...-....+.=-++.++.+.++|+.++++|+++.+++.. |..|. .+-
T Consensus 123 n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~------~~r--- 193 (347)
T PLN02746 123 NLKGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPI------EGP--- 193 (347)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCc------cCC---
Confidence 47999999999999999998666554443224445678899999999999999999877754 55553 232
Q ss_pred hhHHHHHHHHHHHHH
Q 009535 179 ESQEDFGYFADICFK 193 (532)
Q Consensus 179 ~~~~~f~~ya~~~~~ 193 (532)
-.++.+.++++.+.+
T Consensus 194 ~~~~~l~~~~~~~~~ 208 (347)
T PLN02746 194 VPPSKVAYVAKELYD 208 (347)
T ss_pred CCHHHHHHHHHHHHH
Confidence 236777777777655
No 61
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=64.09 E-value=16 Score=38.72 Aligned_cols=61 Identities=18% Similarity=0.114 Sum_probs=47.7
Q ss_pred hHHHHHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEec
Q 009535 100 YLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLT 160 (532)
Q Consensus 100 y~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~ 160 (532)
-++|++++.+.|++.+|+.++-|.+.-....+.-..+.++-..+.|+.+++.|+++.+++-
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~e 133 (363)
T TIGR02090 73 LKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAE 133 (363)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 4899999999999999998877666433211333456778889999999999999888774
No 62
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=64.08 E-value=18 Score=35.92 Aligned_cols=81 Identities=15% Similarity=0.049 Sum_probs=54.9
Q ss_pred HHHHHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecCCCCcHhHHHhhCCCCChhh
Q 009535 101 LEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPES 180 (532)
Q Consensus 101 ~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~P~~l~~~~ggw~~~~~ 180 (532)
+++++++++.|++.+|++++-+.+.-....+.=.+..++...+.|+.+++.|+++.+.+....-| ...
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~------------~~~ 144 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC------------KTD 144 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCC------------CCC
Confidence 89999999999999999998763211110011122356777899999999999999998653333 133
Q ss_pred HHHHHHHHHHHHH
Q 009535 181 QEDFGYFADICFK 193 (532)
Q Consensus 181 ~~~f~~ya~~~~~ 193 (532)
.+.+.++++.+.+
T Consensus 145 ~~~l~~~~~~~~~ 157 (265)
T cd03174 145 PEYVLEVAKALEE 157 (265)
T ss_pred HHHHHHHHHHHHH
Confidence 5556666666543
No 63
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=62.46 E-value=53 Score=34.44 Aligned_cols=88 Identities=16% Similarity=0.098 Sum_probs=64.9
Q ss_pred CCccchhhhchHHHHHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecCCCCcHhHH
Q 009535 90 GDVAVDHYHRYLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIE 169 (532)
Q Consensus 90 ~~~a~d~y~ry~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~P~~l~ 169 (532)
+-+|.=||+ |+--+. ..+.|++.+|+. + |.+-.+ +..+++++.++++|+-.=+..+|-.++..+.
T Consensus 74 PlVADIHFd-~~lAl~-a~~~g~dkiRIN---------P--GNig~~--e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~ 138 (346)
T TIGR00612 74 PLVADIHFD-YRLAAL-AMAKGVAKVRIN---------P--GNIGFR--ERVRDVVEKARDHGKAMRIGVNHGSLERRLL 138 (346)
T ss_pred CEEEeeCCC-cHHHHH-HHHhccCeEEEC---------C--CCCCCH--HHHHHHHHHHHHCCCCEEEecCCCCCcHHHH
Confidence 334555665 444433 346699999873 3 544332 6789999999999999999999999999999
Q ss_pred HhhCCCCChhhHHHHHHHHHHHH
Q 009535 170 DKYGAWLSPESQEDFGYFADICF 192 (532)
Q Consensus 170 ~~~ggw~~~~~~~~f~~ya~~~~ 192 (532)
++||+-+.+.+++.-.++++.+-
T Consensus 139 ~kyg~~t~eamveSAl~~v~~le 161 (346)
T TIGR00612 139 EKYGDATAEAMVQSALEEAAILE 161 (346)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHH
Confidence 99876566667777777776643
No 64
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=61.42 E-value=39 Score=37.50 Aligned_cols=99 Identities=18% Similarity=0.254 Sum_probs=55.3
Q ss_pred HHHHHHHHcCCCCEEEeecCccCCCCCCCCCCCccCchhhHHHHHHHHHHHHHHHHcCCCeEEEEeeccc-c---ccccc
Q 009535 405 IIKYIKERYKNTPMFITENGYGEICMPNSSTEDLLNDVKRVEYMASYLDALITAVRDGADVRGYFVWSLL-D---SFEWT 480 (532)
Q Consensus 405 ~L~~~~~rY~~~PI~ITENG~~~~~~~~~~~~g~i~D~~Ri~yl~~hl~~v~~Ai~dGv~V~GY~~WSl~-D---n~EW~ 480 (532)
.|..++++|++..|+-||...+....+. ...+-.-.|. ..+...+...+..| +.||..|.|+ | ..-|.
T Consensus 319 ~l~~~h~~~P~k~l~~TE~~~g~~~~~~---~~~~g~w~~~---~~y~~~ii~~lnn~--~~gw~~WNl~LD~~GGP~~~ 390 (496)
T PF02055_consen 319 ALDQVHNKFPDKFLLFTEACCGSWNWDT---SVDLGSWDRA---ERYAHDIIGDLNNW--VSGWIDWNLALDENGGPNWV 390 (496)
T ss_dssp HHHHHHHHSTTSEEEEEEEESS-STTS----SS-TTHHHHH---HHHHHHHHHHHHTT--EEEEEEEESEBETTS---TT
T ss_pred HHHHHHHHCCCcEEEeeccccCCCCccc---ccccccHHHH---HHHHHHHHHHHHhh--ceeeeeeeeecCCCCCCccc
Confidence 4577899999999999999776533110 0001112232 23445566667676 5799999985 3 23344
Q ss_pred CCCCCccceEEecCCCCcccccchHHHHHHHHH
Q 009535 481 YGYTARFGLHHVDFATLKRTPKLSATWYKHFIA 513 (532)
Q Consensus 481 ~Gy~~rfGL~~VD~~~~~R~pK~S~~~y~~ii~ 513 (532)
.++... .+-||.++.+-+..+.++.++++-+
T Consensus 391 ~n~~d~--~iivd~~~~~~~~~p~yY~~gHfSK 421 (496)
T PF02055_consen 391 GNFCDA--PIIVDSDTGEFYKQPEYYAMGHFSK 421 (496)
T ss_dssp ---B----SEEEEGGGTEEEE-HHHHHHHHHHT
T ss_pred CCCCCc--eeEEEcCCCeEEEcHHHHHHHHHhc
Confidence 444333 3447777666666777776666543
No 65
>PLN00196 alpha-amylase; Provisional
Probab=60.59 E-value=15 Score=39.87 Aligned_cols=64 Identities=17% Similarity=0.289 Sum_probs=44.3
Q ss_pred hhhchHHHHHHHHHcCCCeeEeccccceeecCCCCC-----CCCh---hHHHHHHHHHHHHHHcCCccEEEec
Q 009535 96 HYHRYLEDIDLMESLGVNSYRFSISWARILPKGRFG-----DVNS---EGINHYNKLIDALLLKGIQPFVTLT 160 (532)
Q Consensus 96 ~y~ry~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g-----~~n~---~~l~~y~~~i~~l~~~gi~pivtL~ 160 (532)
+|....+.++-|++||++++=++=.....-+.|- . .+|. -..+=++++|+++.++||++|+.+.
T Consensus 42 ~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY-~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV 113 (428)
T PLN00196 42 WYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGY-MPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIV 113 (428)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCC-CccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 3556788899999999999988865443322221 0 1221 1224589999999999999999753
No 66
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=60.42 E-value=22 Score=35.61 Aligned_cols=59 Identities=20% Similarity=0.220 Sum_probs=46.3
Q ss_pred HHHHHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEe
Q 009535 101 LEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTL 159 (532)
Q Consensus 101 ~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL 159 (532)
.+|++++.+.|++.+|+.++.|.+.-....+.--++.++-..++++.+++.|+++.+++
T Consensus 72 ~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 130 (259)
T cd07939 72 KEDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGA 130 (259)
T ss_pred HHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEee
Confidence 78999999999999999998876643321133345678889999999999999877655
No 67
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=60.21 E-value=37 Score=35.22 Aligned_cols=99 Identities=19% Similarity=0.291 Sum_probs=65.4
Q ss_pred hchHHHHHHHHHcCCCeeEecccc-------ceeecCCC--CCC-CChhHHHHHHHHHHHHHHcCCccEEEe----cC--
Q 009535 98 HRYLEDIDLMESLGVNSYRFSISW-------ARILPKGR--FGD-VNSEGINHYNKLIDALLLKGIQPFVTL----TQ-- 161 (532)
Q Consensus 98 ~ry~eDi~l~k~lG~~~~R~si~W-------~ri~P~~~--~g~-~n~~~l~~y~~~i~~l~~~gi~pivtL----~H-- 161 (532)
...++-++.|+++|+|++=+.+.+ |.++|... .|. ....|.+....+|++++++||++..-+ -.
T Consensus 19 ~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~~~~ 98 (311)
T PF02638_consen 19 EQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGFNAPD 98 (311)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeecCCCc
Confidence 457888999999999998766644 34444320 011 111245678999999999999987544 11
Q ss_pred -----CCCcHhHHHh-------h----C--CCCC---hhhHHHHHHHHHHHHHHhC
Q 009535 162 -----FDSPQEIEDK-------Y----G--AWLS---PESQEDFGYFADICFKSFG 196 (532)
Q Consensus 162 -----~~~P~~l~~~-------~----g--gw~~---~~~~~~f~~ya~~~~~~fg 196 (532)
-..|.|+..+ + | .|.| |++.++..+-++.++++|.
T Consensus 99 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Yd 154 (311)
T PF02638_consen 99 VSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYD 154 (311)
T ss_pred hhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCC
Confidence 1236665421 1 1 1444 7889999999999999994
No 68
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=58.98 E-value=23 Score=37.41 Aligned_cols=95 Identities=16% Similarity=0.215 Sum_probs=56.1
Q ss_pred HHHHHHHHHcCCCeeEeccccceeecCC--CCCC-CChhHHHHHHHHHHHHHHcCCccE-EEecCCCCcHhHHHhhCCCC
Q 009535 101 LEDIDLMESLGVNSYRFSISWARILPKG--RFGD-VNSEGINHYNKLIDALLLKGIQPF-VTLTQFDSPQEIEDKYGAWL 176 (532)
Q Consensus 101 ~eDi~l~k~lG~~~~R~si~W~ri~P~~--~~g~-~n~~~l~~y~~~i~~l~~~gi~pi-vtL~H~~~P~~l~~~~ggw~ 176 (532)
+|.++.|+++|++.+-+++ .-+-++- ..|. .+ .+-..+.|+.+++.|+..+ ++| =+++|.
T Consensus 99 ~e~l~~l~~~G~~rvsiGv--qS~~d~~L~~l~R~~~---~~~~~~ai~~l~~~g~~~v~~dl-i~GlPg---------- 162 (374)
T PRK05799 99 EEKLKILKSMGVNRLSIGL--QAWQNSLLKYLGRIHT---FEEFLENYKLARKLGFNNINVDL-MFGLPN---------- 162 (374)
T ss_pred HHHHHHHHHcCCCEEEEEC--ccCCHHHHHHcCCCCC---HHHHHHHHHHHHHcCCCcEEEEe-ecCCCC----------
Confidence 5889999999999555555 3332221 0132 22 3456788999999999744 444 356663
Q ss_pred ChhhHHHHHHHHHHHHHHhCCCceeEEEecCchhhhh
Q 009535 177 SPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQVT 213 (532)
Q Consensus 177 ~~~~~~~f~~ya~~~~~~fgd~v~~w~t~NEp~~~~~ 213 (532)
++.+.|.+-.+.+.+.=-+.+..+...-+|+....
T Consensus 163 --qt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~ 197 (374)
T PRK05799 163 --QTLEDWKETLEKVVELNPEHISCYSLIIEEGTPFY 197 (374)
T ss_pred --CCHHHHHHHHHHHHhcCCCEEEEeccEecCCCHHH
Confidence 23455656566655432255555554457775443
No 69
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=58.23 E-value=38 Score=37.94 Aligned_cols=60 Identities=17% Similarity=0.416 Sum_probs=40.2
Q ss_pred hhhchHHHHHHHHHcCCCeeEeccc--------cc-----eeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEec
Q 009535 96 HYHRYLEDIDLMESLGVNSYRFSIS--------WA-----RILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLT 160 (532)
Q Consensus 96 ~y~ry~eDi~l~k~lG~~~~R~si~--------W~-----ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~ 160 (532)
-|.-..+-++-+|+||++++-+.=- |. -..|++..|. .+=++++|++|.++||++|+++.
T Consensus 109 ~~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~G~-----~~e~k~lV~~aH~~Gi~VilD~V 181 (542)
T TIGR02402 109 TFDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAYGG-----PDDLKALVDAAHGLGLGVILDVV 181 (542)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccccccCC-----HHHHHHHHHHHHHCCCEEEEEEc
Confidence 3455566789999999999976421 20 0111111132 34579999999999999999764
No 70
>PRK12313 glycogen branching enzyme; Provisional
Probab=54.24 E-value=46 Score=38.02 Aligned_cols=93 Identities=20% Similarity=0.314 Sum_probs=58.7
Q ss_pred hhchHHH-HHHHHHcCCCeeEecc--------cc-------ceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEec
Q 009535 97 YHRYLED-IDLMESLGVNSYRFSI--------SW-------ARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLT 160 (532)
Q Consensus 97 y~ry~eD-i~l~k~lG~~~~R~si--------~W-------~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~ 160 (532)
|.-..+. |+-+|+||++++=+.= +| -.|.|.= |+ .+=++++|++|.++||++|+++.
T Consensus 169 ~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~--Gt-----~~d~k~lv~~~H~~Gi~VilD~V 241 (633)
T PRK12313 169 YRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRY--GT-----PEDFMYLVDALHQNGIGVILDWV 241 (633)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCC--CC-----HHHHHHHHHHHHHCCCEEEEEEC
Confidence 4445566 4899999999997543 12 1122221 33 34479999999999999999854
Q ss_pred --CCCCcH----hH------H--Hh----hCCC-------CChhhHHHHHHHHHHHHHHhC
Q 009535 161 --QFDSPQ----EI------E--DK----YGAW-------LSPESQEDFGYFADICFKSFG 196 (532)
Q Consensus 161 --H~~~P~----~l------~--~~----~ggw-------~~~~~~~~f~~ya~~~~~~fg 196 (532)
|+.-.. ++ . +. +..| .++++.+.+.+-++.-++.||
T Consensus 242 ~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~ 302 (633)
T PRK12313 242 PGHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYH 302 (633)
T ss_pred CCCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 543110 11 0 00 0122 467888888888888888874
No 71
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=53.87 E-value=83 Score=32.61 Aligned_cols=108 Identities=19% Similarity=0.194 Sum_probs=70.3
Q ss_pred HHHHHHHHHcCCC-eeEeccc--cceeec-C-CCCCCCChhHHHHHHHHHHHHHHcCCccEEEecCCCCcHhHHHhhCCC
Q 009535 101 LEDIDLMESLGVN-SYRFSIS--WARILP-K-GRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAW 175 (532)
Q Consensus 101 ~eDi~l~k~lG~~-~~R~si~--W~ri~P-~-~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~P~~l~~~~ggw 175 (532)
+|.+++|+++|++ .+-++++ =.++.- . .. | .+. +-+.+.++.++++||.+.+.+. +++|. .
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inK-g-~t~---~~~~~ai~~~~~~Gi~v~~~~i-~G~P~--------~ 182 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGLETANDRIREKSINK-G-STF---EDFIRAAELARKYGAGVKAYLL-FKPPF--------L 182 (313)
T ss_pred HHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCC-C-CCH---HHHHHHHHHHHHcCCcEEEEEE-ecCCC--------C
Confidence 7889999999998 4666662 122221 1 11 2 233 5577999999999999666654 34452 1
Q ss_pred CChhhHHHHHHHHHHHHHHhCCCceeEEEecCchhhhhcccccCCCCC
Q 009535 176 LSPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQVTLSYRLGCHPP 223 (532)
Q Consensus 176 ~~~~~~~~f~~ya~~~~~~fgd~v~~w~t~NEp~~~~~~gy~~g~~~P 223 (532)
...+.++.+.+.++.+.+ +++.|....+.=+|+.....-|..|.|.|
T Consensus 183 se~ea~ed~~~ti~~~~~-l~~~vs~~~l~v~~gT~l~~~~~~G~~~p 229 (313)
T TIGR01210 183 SEKEAIADMISSIRKCIP-VTDTVSINPTNVQKGTLVEFLWNRGLYRP 229 (313)
T ss_pred ChhhhHHHHHHHHHHHHh-cCCcEEEECCEEeCCCHHHHHHHcCCCCC
Confidence 223667778777877765 45888887777677765444466677755
No 72
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=53.78 E-value=37 Score=38.48 Aligned_cols=51 Identities=18% Similarity=0.271 Sum_probs=34.1
Q ss_pred hhchHHH-----HHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecC
Q 009535 97 YHRYLED-----IDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQ 161 (532)
Q Consensus 97 y~ry~eD-----i~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H 161 (532)
|.+|.+| +++.++.|++.+|+..+.+.+ +-....|+.+++.|....+++.+
T Consensus 91 ~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~--------------~~~~~ai~~ak~~G~~~~~~i~y 146 (593)
T PRK14040 91 YRHYADDVVERFVERAVKNGMDVFRVFDAMNDP--------------RNLETALKAVRKVGAHAQGTLSY 146 (593)
T ss_pred cccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH--------------HHHHHHHHHHHHcCCeEEEEEEE
Confidence 5555555 999999999999999755433 23345566666666665555543
No 73
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=53.74 E-value=36 Score=34.55 Aligned_cols=84 Identities=12% Similarity=0.163 Sum_probs=60.5
Q ss_pred HHHHHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecC-CCCcHhHHHhhCCCCChh
Q 009535 101 LEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQ-FDSPQEIEDKYGAWLSPE 179 (532)
Q Consensus 101 ~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H-~~~P~~l~~~~ggw~~~~ 179 (532)
++|++.+.+.|++.+++.++=|...-....+.--.+.++...+.++.++++|+++.+++.. |+.|. ++-.
T Consensus 76 ~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~------~~~~--- 146 (274)
T cd07938 76 LRGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPY------EGEV--- 146 (274)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCC------CCCC---
Confidence 6799999999999999998655432222113333567788999999999999999888873 56652 2322
Q ss_pred hHHHHHHHHHHHHH
Q 009535 180 SQEDFGYFADICFK 193 (532)
Q Consensus 180 ~~~~f~~ya~~~~~ 193 (532)
..+.+.++++.+.+
T Consensus 147 ~~~~~~~~~~~~~~ 160 (274)
T cd07938 147 PPERVAEVAERLLD 160 (274)
T ss_pred CHHHHHHHHHHHHH
Confidence 46677777777654
No 74
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=53.39 E-value=86 Score=32.86 Aligned_cols=86 Identities=19% Similarity=0.193 Sum_probs=63.6
Q ss_pred cchhhhchHHHHHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecCCCCcHhHHHhh
Q 009535 93 AVDHYHRYLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKY 172 (532)
Q Consensus 93 a~d~y~ry~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~P~~l~~~~ 172 (532)
|-=||+ |+== -...+-|++.+|+. + |.+-.+ +....+++.++++|+-.=+..+|-.+..-+.++|
T Consensus 79 aDiHf~-~rla-~~~~~~g~~k~RIN---------P--GNig~~--~~v~~vVe~Ak~~g~piRIGVN~GSLek~~~~ky 143 (361)
T COG0821 79 ADIHFD-YRLA-LEAAECGVDKVRIN---------P--GNIGFK--DRVREVVEAAKDKGIPIRIGVNAGSLEKRLLEKY 143 (361)
T ss_pred EEeecc-HHHH-HHhhhcCcceEEEC---------C--cccCcH--HHHHHHHHHHHHcCCCEEEecccCchhHHHHHHh
Confidence 333555 4332 33456678888863 3 544333 3789999999999999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHH
Q 009535 173 GAWLSPESQEDFGYFADICFK 193 (532)
Q Consensus 173 ggw~~~~~~~~f~~ya~~~~~ 193 (532)
|+-+.+..++--.++|+.+-+
T Consensus 144 ~~pt~ealveSAl~~a~~~e~ 164 (361)
T COG0821 144 GGPTPEALVESALEHAELLEE 164 (361)
T ss_pred cCCCHHHHHHHHHHHHHHHHH
Confidence 988777777777777776543
No 75
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=53.15 E-value=36 Score=37.44 Aligned_cols=55 Identities=22% Similarity=0.385 Sum_probs=42.2
Q ss_pred hhchHHH-----HHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecCCCCc
Q 009535 97 YHRYLED-----IDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSP 165 (532)
Q Consensus 97 y~ry~eD-----i~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~P 165 (532)
|..|.+| ++++++-|++.+|+.-.. |. ++-....|+.+++.|....+++.+-+-|
T Consensus 99 y~~ypddvv~~fv~~a~~~Gidi~Rifd~l------------nd--~~n~~~ai~~ak~~G~~~~~~i~yt~sp 158 (468)
T PRK12581 99 YRHYADDIVDKFISLSAQNGIDVFRIFDAL------------ND--PRNIQQALRAVKKTGKEAQLCIAYTTSP 158 (468)
T ss_pred ccCCcchHHHHHHHHHHHCCCCEEEEcccC------------CC--HHHHHHHHHHHHHcCCEEEEEEEEEeCC
Confidence 6678888 999999999999987533 21 2445678888888888888888876655
No 76
>PRK05402 glycogen branching enzyme; Provisional
Probab=53.00 E-value=59 Score=37.87 Aligned_cols=93 Identities=14% Similarity=0.196 Sum_probs=57.9
Q ss_pred hhchHHHH-HHHHHcCCCeeEeccc--------c-------ceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEec
Q 009535 97 YHRYLEDI-DLMESLGVNSYRFSIS--------W-------ARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLT 160 (532)
Q Consensus 97 y~ry~eDi-~l~k~lG~~~~R~si~--------W-------~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~ 160 (532)
|.-..+.+ +-+|+||++++=+.=- | -.|.|.= |+ .+=++++|++|.++||++|+++.
T Consensus 264 ~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~--Gt-----~~dfk~lV~~~H~~Gi~VilD~V 336 (726)
T PRK05402 264 YRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRF--GT-----PDDFRYFVDACHQAGIGVILDWV 336 (726)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCccc--CC-----HHHHHHHHHHHHHCCCEEEEEEC
Confidence 33344453 7789999999976532 2 1122221 32 34479999999999999999864
Q ss_pred --CCCC-----------cHhHH-H----hhC-------CCCChhhHHHHHHHHHHHHHHhC
Q 009535 161 --QFDS-----------PQEIE-D----KYG-------AWLSPESQEDFGYFADICFKSFG 196 (532)
Q Consensus 161 --H~~~-----------P~~l~-~----~~g-------gw~~~~~~~~f~~ya~~~~~~fg 196 (532)
|+.. |.+.. + .+. .+.++++.+.+.+-++.-+++|+
T Consensus 337 ~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~ 397 (726)
T PRK05402 337 PAHFPKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFH 397 (726)
T ss_pred CCCCCCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhC
Confidence 5421 11111 0 011 23467888888888888888874
No 77
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=52.70 E-value=32 Score=36.43 Aligned_cols=81 Identities=14% Similarity=0.139 Sum_probs=56.9
Q ss_pred HHHHHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecCCCCcHhHHHhhCCCCChhh
Q 009535 101 LEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPES 180 (532)
Q Consensus 101 ~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~P~~l~~~~ggw~~~~~ 180 (532)
++|++.+.+.|++.+|+.++-|.+.-....+.--.+.++...+.|+.++++|+++.++.-. .+.. .
T Consensus 75 ~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed-----------~~r~---~ 140 (365)
T TIGR02660 75 DADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGED-----------ASRA---D 140 (365)
T ss_pred HHHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecC-----------CCCC---C
Confidence 7999999999999999999876543332113334567888999999999999987765421 2223 3
Q ss_pred HHHHHHHHHHHHHHhC
Q 009535 181 QEDFGYFADICFKSFG 196 (532)
Q Consensus 181 ~~~f~~ya~~~~~~fg 196 (532)
.+.+.++++.+.+ .|
T Consensus 141 ~~~l~~~~~~~~~-~G 155 (365)
T TIGR02660 141 PDFLVELAEVAAE-AG 155 (365)
T ss_pred HHHHHHHHHHHHH-cC
Confidence 5666777776554 44
No 78
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=52.41 E-value=63 Score=33.29 Aligned_cols=85 Identities=14% Similarity=0.092 Sum_probs=51.1
Q ss_pred HHHHHcCCCeeEeccc--cceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecCCCCcHhHHHhhCCCCChhhHH
Q 009535 105 DLMESLGVNSYRFSIS--WARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQE 182 (532)
Q Consensus 105 ~l~k~lG~~~~R~si~--W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~P~~l~~~~ggw~~~~~~~ 182 (532)
+.+++.|++.+-++.- -..-.|.-. |.............|..|+++|++++|++-.+.-... -.+...++
T Consensus 19 ~~~~~~g~~~v~lAFi~~~~~~~~~w~-g~~~~~~~~~~~~~i~~lk~~G~kViiS~GG~~g~~~-------~~~~~~~~ 90 (294)
T cd06543 19 TYAAATGVKAFTLAFIVASGGCKPAWG-GSYPLDQGGWIKSDIAALRAAGGDVIVSFGGASGTPL-------ATSCTSAD 90 (294)
T ss_pred HHHHHcCCCEEEEEEEEcCCCCcccCC-CCCCcccchhHHHHHHHHHHcCCeEEEEecCCCCCcc-------ccCcccHH
Confidence 5677889998886643 122222210 1111001234567899999999999999843332110 01346788
Q ss_pred HHHHHHHHHHHHhCC
Q 009535 183 DFGYFADICFKSFGD 197 (532)
Q Consensus 183 ~f~~ya~~~~~~fgd 197 (532)
.|++....+.++|+=
T Consensus 91 ~~~~a~~~~i~~y~~ 105 (294)
T cd06543 91 QLAAAYQKVIDAYGL 105 (294)
T ss_pred HHHHHHHHHHHHhCC
Confidence 888888888888853
No 79
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=52.14 E-value=53 Score=35.88 Aligned_cols=104 Identities=16% Similarity=0.181 Sum_probs=62.7
Q ss_pred HHHHHHHHHcCCCeeEecc-ccc-eeecCCCCCC-CChhHHHHHHHHHHHHHHcC-CccEEEecCCCCcHhHHHhhCCCC
Q 009535 101 LEDIDLMESLGVNSYRFSI-SWA-RILPKGRFGD-VNSEGINHYNKLIDALLLKG-IQPFVTLTQFDSPQEIEDKYGAWL 176 (532)
Q Consensus 101 ~eDi~l~k~lG~~~~R~si-~W~-ri~P~~~~g~-~n~~~l~~y~~~i~~l~~~g-i~pivtL~H~~~P~~l~~~~ggw~ 176 (532)
+|.+++|+++|+|.+.++| |-+ .+...- |. .+. +-..+.|+.+++.| +.+.++|. +++|.
T Consensus 163 ~e~l~~l~~aGvnRiSiGVQSf~d~vLk~l--gR~~~~---~~~~~~i~~l~~~g~~~v~~DlI-~GlPg---------- 226 (449)
T PRK09058 163 DEKADAALDAGANRFSIGVQSFNTQVRRRA--GRKDDR---EEVLARLEELVARDRAAVVCDLI-FGLPG---------- 226 (449)
T ss_pred HHHHHHHHHcCCCEEEecCCcCCHHHHHHh--CCCCCH---HHHHHHHHHHHhCCCCcEEEEEE-eeCCC----------
Confidence 6889999999999888887 332 222111 22 222 34567889999999 56666664 56663
Q ss_pred ChhhHHHHHHHHHHHHHHhCCCceeEEEecCchhhhhcccccCCCC
Q 009535 177 SPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQVTLSYRLGCHP 222 (532)
Q Consensus 177 ~~~~~~~f~~ya~~~~~~fgd~v~~w~t~NEp~~~~~~gy~~g~~~ 222 (532)
++.+.|.+=.+.+.+-=-+.|..+...-||......-+..|..+
T Consensus 227 --qT~e~~~~~l~~~~~l~~~~is~y~L~~~pgT~l~~~~~~g~l~ 270 (449)
T PRK09058 227 --QTPEIWQQDLAIVRDLGLDGVDLYALNLLPGTPLAKAVEKGKLP 270 (449)
T ss_pred --CCHHHHHHHHHHHHhcCCCEEEEeccccCCCCHHHHHHHcCCCC
Confidence 12344444455544433467787777778876544333445443
No 80
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=52.07 E-value=44 Score=36.81 Aligned_cols=55 Identities=20% Similarity=0.305 Sum_probs=40.9
Q ss_pred hhchHHH-----HHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecCCCCc
Q 009535 97 YHRYLED-----IDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSP 165 (532)
Q Consensus 97 y~ry~eD-----i~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~P 165 (532)
|..|.+| ++++.+.|++.+|+.++-+.+ +-....|+.+++.|+.+..++.+-..|
T Consensus 89 ~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd~--------------~n~~~~i~~ak~~G~~v~~~i~~t~~p 148 (467)
T PRK14041 89 YRHYADDVVELFVKKVAEYGLDIIRIFDALNDI--------------RNLEKSIEVAKKHGAHVQGAISYTVSP 148 (467)
T ss_pred cccccchhhHHHHHHHHHCCcCEEEEEEeCCHH--------------HHHHHHHHHHHHCCCEEEEEEEeccCC
Confidence 5667888 999999999999999866542 334667788888888877777653334
No 81
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=51.81 E-value=1.3e+02 Score=30.95 Aligned_cols=105 Identities=17% Similarity=0.200 Sum_probs=71.4
Q ss_pred chHHHHHHHHHcCC--CeeEeccccceeecCCCCC--CCChhHHHHHHHHHHHHHHcCCccEEEecCCCC---cHhHH--
Q 009535 99 RYLEDIDLMESLGV--NSYRFSISWARILPKGRFG--DVNSEGINHYNKLIDALLLKGIQPFVTLTQFDS---PQEIE-- 169 (532)
Q Consensus 99 ry~eDi~l~k~lG~--~~~R~si~W~ri~P~~~~g--~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~---P~~l~-- 169 (532)
...+-++.+++.|+ +++=+.+.|..- . | ++|.+-.---.++|+.|+++|+++++.+.=+-. +..-+
T Consensus 31 ~v~~~~~~~~~~~iP~d~i~iD~~w~~~---~--g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~s~~~~e~~ 105 (303)
T cd06592 31 TVLNYAQEIIDNGFPNGQIEIDDNWETC---Y--GDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTDSENFREAV 105 (303)
T ss_pred HHHHHHHHHHHcCCCCCeEEeCCCcccc---C--CccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCCCHHHHhhh
Confidence 35666788888885 577777778532 2 3 455544444689999999999998887763222 11111
Q ss_pred -------HhhC----------C------CCChhhHHHHHHHHHHHHHHhCCCceeEEEecCch
Q 009535 170 -------DKYG----------A------WLSPESQEDFGYFADICFKSFGDRVKYWFTINEPN 209 (532)
Q Consensus 170 -------~~~g----------g------w~~~~~~~~f~~ya~~~~~~fgd~v~~w~t~NEp~ 209 (532)
++.| | ++||+.++.+.+..+.+....|= --+|+=+|||.
T Consensus 106 ~~g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gv-dg~w~D~~E~~ 167 (303)
T cd06592 106 EKGYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYGI-DSFKFDAGEAS 167 (303)
T ss_pred hCCeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhCC-cEEEeCCCCcc
Confidence 1011 1 68899999999998888877754 56778899997
No 82
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=50.94 E-value=40 Score=35.93 Aligned_cols=59 Identities=17% Similarity=0.155 Sum_probs=46.9
Q ss_pred HHHHHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEe
Q 009535 101 LEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTL 159 (532)
Q Consensus 101 ~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL 159 (532)
++|++.+.+.|++.+|++++-|.+.-....+.--++.++...+.|+.+++.|+++.++.
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ 136 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSA 136 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 78999999999999999998766533321233346778889999999999999988864
No 83
>PLN02784 alpha-amylase
Probab=50.60 E-value=36 Score=40.12 Aligned_cols=65 Identities=20% Similarity=0.264 Sum_probs=47.0
Q ss_pred hhhhchHHHHHHHHHcCCCeeEeccccceeecCCCCC-----CCChh--HHHHHHHHHHHHHHcCCccEEEec
Q 009535 95 DHYHRYLEDIDLMESLGVNSYRFSISWARILPKGRFG-----DVNSE--GINHYNKLIDALLLKGIQPFVTLT 160 (532)
Q Consensus 95 d~y~ry~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g-----~~n~~--~l~~y~~~i~~l~~~gi~pivtL~ 160 (532)
.+|....+.++-|++||++++=++=.-....+.|- . .+|.. ..+=++++|++|+++||++|+++.
T Consensus 518 ~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY-~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDiV 589 (894)
T PLN02784 518 RWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGY-MPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDAV 589 (894)
T ss_pred chHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCc-CcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 47889999999999999999987765443333221 1 11211 235579999999999999999753
No 84
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=50.58 E-value=77 Score=32.16 Aligned_cols=68 Identities=10% Similarity=0.015 Sum_probs=49.1
Q ss_pred hHHHHHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecCCCCcHhHHHhhCCCCChh
Q 009535 100 YLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPE 179 (532)
Q Consensus 100 y~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~P~~l~~~~ggw~~~~ 179 (532)
-++|+++..+.|++.+|+++..+. ++.-.+.|+.++++|+++.+++.--+ + .+.
T Consensus 93 ~~~di~~~~~~g~~~iri~~~~~~--------------~~~~~~~i~~ak~~G~~v~~~i~~~~---------~---~~~ 146 (275)
T cd07937 93 VELFVEKAAKNGIDIFRIFDALND--------------VRNLEVAIKAVKKAGKHVEGAICYTG---------S---PVH 146 (275)
T ss_pred HHHHHHHHHHcCCCEEEEeecCCh--------------HHHHHHHHHHHHHCCCeEEEEEEecC---------C---CCC
Confidence 478999999999999999876544 35567899999999999887663101 1 223
Q ss_pred hHHHHHHHHHHHHH
Q 009535 180 SQEDFGYFADICFK 193 (532)
Q Consensus 180 ~~~~f~~ya~~~~~ 193 (532)
..+.+.++++.+.+
T Consensus 147 ~~~~~~~~~~~~~~ 160 (275)
T cd07937 147 TLEYYVKLAKELED 160 (275)
T ss_pred CHHHHHHHHHHHHH
Confidence 45667777777654
No 85
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=49.19 E-value=1.2e+02 Score=34.72 Aligned_cols=95 Identities=17% Similarity=0.254 Sum_probs=59.6
Q ss_pred hhchHHHH-HHHHHcCCCeeEe-cccccee------------ecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEec--
Q 009535 97 YHRYLEDI-DLMESLGVNSYRF-SISWARI------------LPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLT-- 160 (532)
Q Consensus 97 y~ry~eDi-~l~k~lG~~~~R~-si~W~ri------------~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~-- 160 (532)
|.-..+-+ +-+|+||++++=+ .|..+.- .|++..|. .+=+.++|++|.++||++|+.+.
T Consensus 155 ~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt-----~~dlk~lV~~~H~~Gi~VilD~V~N 229 (613)
T TIGR01515 155 YRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGT-----PDDFMYFVDACHQAGIGVILDWVPG 229 (613)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCC-----HHHHHHHHHHHHHCCCEEEEEeccc
Confidence 44445564 8899999999988 4433210 01110122 23478999999999999999865
Q ss_pred CCCC-----------cHhHHHh-----hCC-------CCChhhHHHHHHHHHHHHHHhC
Q 009535 161 QFDS-----------PQEIEDK-----YGA-------WLSPESQEDFGYFADICFKSFG 196 (532)
Q Consensus 161 H~~~-----------P~~l~~~-----~gg-------w~~~~~~~~f~~ya~~~~~~fg 196 (532)
|... |.+.... +.. +.++++.+.+.+-++.-++.|+
T Consensus 230 H~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~ 288 (613)
T TIGR01515 230 HFPKDDHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYH 288 (613)
T ss_pred CcCCccchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 5421 1121100 011 2457888999999999998885
No 86
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=48.59 E-value=57 Score=32.96 Aligned_cols=65 Identities=17% Similarity=0.200 Sum_probs=49.6
Q ss_pred HHHHHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecCCCCcHhHHHhhCCCCChhh
Q 009535 101 LEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPES 180 (532)
Q Consensus 101 ~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~P~~l~~~~ggw~~~~~ 180 (532)
.+|++...+.|++.+|+++..+ .++-..++++.++++|+++.+++.+-.- ..
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~~--------------~~~~~~~~i~~ak~~G~~v~~~~~~a~~--------------~~ 136 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHKH--------------EFDEALPLIKAIKEKGYEVFFNLMAISG--------------YS 136 (266)
T ss_pred HHHHHHHhcCCcCEEEEecccc--------------cHHHHHHHHHHHHHCCCeEEEEEEeecC--------------CC
Confidence 5899999999999999987442 2466789999999999999998865211 23
Q ss_pred HHHHHHHHHHHHH
Q 009535 181 QEDFGYFADICFK 193 (532)
Q Consensus 181 ~~~f~~ya~~~~~ 193 (532)
.+.+.++++.+.+
T Consensus 137 ~~~~~~~~~~~~~ 149 (266)
T cd07944 137 DEELLELLELVNE 149 (266)
T ss_pred HHHHHHHHHHHHh
Confidence 5667777777654
No 87
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=47.79 E-value=42 Score=33.99 Aligned_cols=54 Identities=7% Similarity=0.118 Sum_probs=39.0
Q ss_pred HHHHHHHHHcCCCeeEeccccc-eeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEE
Q 009535 101 LEDIDLMESLGVNSYRFSISWA-RILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVT 158 (532)
Q Consensus 101 ~eDi~l~k~lG~~~~R~si~W~-ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivt 158 (532)
+|.++.||++|++.+-++++-+ .+.+.-. +..+ ++.+.+.++.++++||.+.+.
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~-~~~s---~~~~~~ai~~l~~~Gi~v~~~ 177 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLDTSQEFYSNII-STHT---YDDRVDTLENAKKAGLKVCSG 177 (296)
T ss_pred HHHHHHHHHcCCCEEEEcccCCHHHHhhcc-CCCC---HHHHHHHHHHHHHcCCEEEEe
Confidence 7999999999999999999821 1223211 2223 366788999999999986544
No 88
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=47.08 E-value=31 Score=38.70 Aligned_cols=63 Identities=14% Similarity=0.327 Sum_probs=41.4
Q ss_pred hhhchHHHHHHHHHcCCCeeEeccccceeecCCCCC-------CCCh--hHHHHHHHHHHHHHHcCCccEEEec
Q 009535 96 HYHRYLEDIDLMESLGVNSYRFSISWARILPKGRFG-------DVNS--EGINHYNKLIDALLLKGIQPFVTLT 160 (532)
Q Consensus 96 ~y~ry~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g-------~~n~--~~l~~y~~~i~~l~~~gi~pivtL~ 160 (532)
-+.-..+-++-+++||++++=++=-...- ....| .+|+ -..+=++++|++|.++||++|+++.
T Consensus 25 ~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~--~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v 96 (543)
T TIGR02403 25 DLRGIIEKLDYLKKLGVDYIWLNPFYVSP--QKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMV 96 (543)
T ss_pred CHHHHHHhHHHHHHcCCCEEEECCcccCC--CCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 34446677889999999999765432211 11001 1111 1335579999999999999999874
No 89
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=47.01 E-value=32 Score=37.80 Aligned_cols=66 Identities=17% Similarity=0.239 Sum_probs=43.2
Q ss_pred hhhhchHHHHHHHHHcCCCeeEeccccceeecCCCCC----------------CCChh--HHHHHHHHHHHHHHcCCccE
Q 009535 95 DHYHRYLEDIDLMESLGVNSYRFSISWARILPKGRFG----------------DVNSE--GINHYNKLIDALLLKGIQPF 156 (532)
Q Consensus 95 d~y~ry~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g----------------~~n~~--~l~~y~~~i~~l~~~gi~pi 156 (532)
+.|.-..+-++-+++||++++=++=...-......-| .+|.. ..+=++++|++|.++||++|
T Consensus 19 ~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi 98 (479)
T PRK09441 19 KLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVY 98 (479)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEE
Confidence 3455567778999999999998776443221000001 11111 23457999999999999999
Q ss_pred EEec
Q 009535 157 VTLT 160 (532)
Q Consensus 157 vtL~ 160 (532)
+.+.
T Consensus 99 ~D~V 102 (479)
T PRK09441 99 ADVV 102 (479)
T ss_pred EEEC
Confidence 9765
No 90
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=46.65 E-value=36 Score=35.68 Aligned_cols=111 Identities=23% Similarity=0.330 Sum_probs=57.5
Q ss_pred hhchHHHHHHHHHcCCCeeEec------------------------------cccceeecCC-CCCCCChh----HHHHH
Q 009535 97 YHRYLEDIDLMESLGVNSYRFS------------------------------ISWARILPKG-RFGDVNSE----GINHY 141 (532)
Q Consensus 97 y~ry~eDi~l~k~lG~~~~R~s------------------------------i~W~ri~P~~-~~g~~n~~----~l~~y 141 (532)
|.||+.-|+.|+=-|||..=-- ..|.|+---. --|.+..+ -.+.=
T Consensus 18 W~rWEreIDWMALnGiNl~La~~GqEavw~~v~~~~G~t~~ei~~ff~GPA~laW~rMgNl~gwgGPLp~~w~~~q~~Lq 97 (333)
T PF05089_consen 18 WERWEREIDWMALNGINLPLAIVGQEAVWQRVLRELGLTDEEIREFFTGPAFLAWWRMGNLQGWGGPLPQSWIDQQAELQ 97 (333)
T ss_dssp HHHHHHHHHHHHHTT--EEE--TTHHHHHHHHHGGGT--HHHHHHHS--TT-HHHHHTTS--STT----TTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHhCCcccCCCCCCHHHHHHHHHHH
Confidence 6789999999999898865321 2344432211 00222211 12334
Q ss_pred HHHHHHHHHcCCccEEEecCCCCcHhHHHhhC--------CC--------CC---hhhHHHHHHHHHHHHHHhCCCceeE
Q 009535 142 NKLIDALLLKGIQPFVTLTQFDSPQEIEDKYG--------AW--------LS---PESQEDFGYFADICFKSFGDRVKYW 202 (532)
Q Consensus 142 ~~~i~~l~~~gi~pivtL~H~~~P~~l~~~~g--------gw--------~~---~~~~~~f~~ya~~~~~~fgd~v~~w 202 (532)
+++++.+++.||+|++--+-=-+|..+.+++. .| ++ +-+.+.=..|-++-.+.|| .-.++
T Consensus 98 ~kIl~RmreLGm~PVLPaF~G~VP~~~~~~~P~a~i~~~~~W~~f~~~~~L~P~dplF~~i~~~F~~~q~~~yG-~~~~Y 176 (333)
T PF05089_consen 98 KKILDRMRELGMTPVLPAFAGHVPRAFKRKYPNANITRQGNWNGFCRPYFLDPTDPLFAEIAKLFYEEQIKLYG-TDHIY 176 (333)
T ss_dssp HHHHHHHHHHT-EEEEE--S-EE-TTHHHHSTT--EE---EETTEE--EEE-SS--HHHHHHHHHHHHHHHHH----SEE
T ss_pred HHHHHHHHHcCCcccCCCcCCCCChHHHhcCCCCEEeeCCCcCCCCCCceeCCCCchHHHHHHHHHHHHHHhcC-CCcee
Confidence 79999999999999998876667888887752 22 22 2233333444455556788 45555
Q ss_pred E--EecCc
Q 009535 203 F--TINEP 208 (532)
Q Consensus 203 ~--t~NEp 208 (532)
. +|||-
T Consensus 177 ~~D~FnE~ 184 (333)
T PF05089_consen 177 AADPFNEG 184 (333)
T ss_dssp E--TTTTS
T ss_pred CCCccCCC
Confidence 4 78883
No 91
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=46.30 E-value=54 Score=33.19 Aligned_cols=81 Identities=11% Similarity=0.027 Sum_probs=55.2
Q ss_pred HHHHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecCCCCcHhHHHhhCCCCChhhH
Q 009535 102 EDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQ 181 (532)
Q Consensus 102 eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~P~~l~~~~ggw~~~~~~ 181 (532)
.+++++++.|++.+|+.++=|...-....|.--++.++...+.|+.+++.|+++.++..+| .+ +. +...
T Consensus 82 ~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~------~d--~~---~~~~ 150 (273)
T cd07941 82 PNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHF------FD--GY---KANP 150 (273)
T ss_pred HHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEec------cc--cC---CCCH
Confidence 6899999999999999876443322211133345678889999999999999988876655 11 11 1235
Q ss_pred HHHHHHHHHHHH
Q 009535 182 EDFGYFADICFK 193 (532)
Q Consensus 182 ~~f~~ya~~~~~ 193 (532)
+.+.++++.+.+
T Consensus 151 ~~~~~~~~~~~~ 162 (273)
T cd07941 151 EYALATLKAAAE 162 (273)
T ss_pred HHHHHHHHHHHh
Confidence 566677776654
No 92
>PRK12568 glycogen branching enzyme; Provisional
Probab=45.88 E-value=76 Score=36.95 Aligned_cols=95 Identities=19% Similarity=0.275 Sum_probs=58.1
Q ss_pred hhchHHH-HHHHHHcCCCeeEecc--------ccc-----eeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEec--
Q 009535 97 YHRYLED-IDLMESLGVNSYRFSI--------SWA-----RILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLT-- 160 (532)
Q Consensus 97 y~ry~eD-i~l~k~lG~~~~R~si--------~W~-----ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~-- 160 (532)
|.-..+. |+-+|+||++++-+.= +|- -..|++..|. .+=++.+|++|.++||++|+++.
T Consensus 268 ~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~G~-----~~dfk~lV~~~H~~Gi~VIlD~V~n 342 (730)
T PRK12568 268 WPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARHGS-----PDGFAQFVDACHRAGIGVILDWVSA 342 (730)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCcccCC-----HHHHHHHHHHHHHCCCEEEEEeccc
Confidence 4444444 6889999999986532 341 0111211133 34579999999999999999865
Q ss_pred CCCC----------c-HhHH-H-h---hCC-------CCChhhHHHHHHHHHHHHHHhC
Q 009535 161 QFDS----------P-QEIE-D-K---YGA-------WLSPESQEDFGYFADICFKSFG 196 (532)
Q Consensus 161 H~~~----------P-~~l~-~-~---~gg-------w~~~~~~~~f~~ya~~~~~~fg 196 (532)
|+.- + .+.. + . +.. +.++++.+.+.+=+..-+++|+
T Consensus 343 H~~~d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyh 401 (730)
T PRK12568 343 HFPDDAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYH 401 (730)
T ss_pred cCCccccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhC
Confidence 4321 1 1100 0 0 112 3457888888888888888874
No 93
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=45.47 E-value=1.1e+02 Score=31.35 Aligned_cols=107 Identities=12% Similarity=0.095 Sum_probs=66.7
Q ss_pred chHHHHHHHHHcC--CCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecCCC---CcHhHHHhh-
Q 009535 99 RYLEDIDLMESLG--VNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFD---SPQEIEDKY- 172 (532)
Q Consensus 99 ry~eDi~l~k~lG--~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~---~P~~l~~~~- 172 (532)
..++-++.+++.| ++++=+.+.|.+-.-.++ =++|++-.--..++|+.|+++|+++++.+.-+. .|..-+-+.
T Consensus 25 ~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~-f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~~~~~~~e~~~~ 103 (308)
T cd06593 25 EVNEFADGMRERNLPCDVIHLDCFWMKEFQWCD-FEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQKSPLFKEAAEK 103 (308)
T ss_pred HHHHHHHHHHHcCCCeeEEEEecccccCCccee-eEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCCCchhHHHHHHC
Confidence 3577889999999 666777778874321110 144444443457999999999999888775332 232211100
Q ss_pred --------------------CC---CCChhhHHHHHHHHHHHHHHhCCCceeEEEecCc
Q 009535 173 --------------------GA---WLSPESQEDFGYFADICFKSFGDRVKYWFTINEP 208 (532)
Q Consensus 173 --------------------gg---w~~~~~~~~f~~ya~~~~~~fgd~v~~w~t~NEp 208 (532)
++ ++||+..+.|.+..+.+.+ .|- --+|+=+||+
T Consensus 104 g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~-~Gi-d~~~~D~~e~ 160 (308)
T cd06593 104 GYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLD-MGV-DCFKTDFGER 160 (308)
T ss_pred CeEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHH-hCC-cEEecCCCCC
Confidence 11 6788999988877776554 331 2355667886
No 94
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=45.46 E-value=85 Score=33.65 Aligned_cols=50 Identities=16% Similarity=0.358 Sum_probs=39.9
Q ss_pred chHHHHHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEe
Q 009535 99 RYLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTL 159 (532)
Q Consensus 99 ry~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL 159 (532)
.|++||++++++|++.|=+.|- .. ..+.. +....+.+++.+.|.+.++++
T Consensus 18 dw~~di~~A~~~GIDgFaLNig------~~--d~~~~---~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 18 DWEADIRLAQAAGIDGFALNIG------SS--DSWQP---DQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred HHHHHHHHHHHcCCCEEEEecc------cC--CcccH---HHHHHHHHHHHhcCCEEEEEe
Confidence 5899999999999999999885 11 23444 556788899999998877766
No 95
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=44.74 E-value=38 Score=39.49 Aligned_cols=94 Identities=12% Similarity=0.153 Sum_probs=57.4
Q ss_pred hhhch-HHHHHHHHHcCCCeeEeccccc---------------eeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEe
Q 009535 96 HYHRY-LEDIDLMESLGVNSYRFSISWA---------------RILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTL 159 (532)
Q Consensus 96 ~y~ry-~eDi~l~k~lG~~~~R~si~W~---------------ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL 159 (532)
-|.-+ ++-++-+|+||++++-+.=-.. .+.|.- |. .+=++++|++|.++||++|+.+
T Consensus 248 ty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~--Gt-----p~dlk~LVd~aH~~GI~VilDv 320 (758)
T PLN02447 248 SYREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRS--GT-----PEDLKYLIDKAHSLGLRVLMDV 320 (758)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccccccc--CC-----HHHHHHHHHHHHHCCCEEEEEe
Confidence 44444 3348999999999998663221 111111 22 2447899999999999999987
Q ss_pred cC--CCC-------------cHhHHHhhCC----C-------CChhhHHHHHHHHHHHHHHhC
Q 009535 160 TQ--FDS-------------PQEIEDKYGA----W-------LSPESQEDFGYFADICFKSFG 196 (532)
Q Consensus 160 ~H--~~~-------------P~~l~~~~gg----w-------~~~~~~~~f~~ya~~~~~~fg 196 (532)
.+ +.- +.|+.....| | .++++.+.+.+-++.-+++|+
T Consensus 321 V~nH~~~~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~ 383 (758)
T PLN02447 321 VHSHASKNTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYK 383 (758)
T ss_pred ccccccccccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 64 211 1232211011 2 345677777777777777773
No 96
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=44.55 E-value=1.3e+02 Score=31.05 Aligned_cols=110 Identities=18% Similarity=0.276 Sum_probs=64.6
Q ss_pred hHHHHHHHHHcCC--CeeEeccccceeecCC-CCC--CCChhHHHHHHHHHHHHHHcCCccEEEecCC---CCcHhHHHh
Q 009535 100 YLEDIDLMESLGV--NSYRFSISWARILPKG-RFG--DVNSEGINHYNKLIDALLLKGIQPFVTLTQF---DSPQEIEDK 171 (532)
Q Consensus 100 y~eDi~l~k~lG~--~~~R~si~W~ri~P~~-~~g--~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~---~~P~~l~~~ 171 (532)
..+-++.+++.|+ +++=+.+.|......+ ..| ++|.+-.---.++|+.|+++|++.++.++-+ +.|..-+-+
T Consensus 26 v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~~~~~~y~e~~ 105 (317)
T cd06598 26 VDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVLKNSKNWGEAV 105 (317)
T ss_pred HHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCcccCCchhHHHHH
Confidence 3455666666664 5566666675432211 002 2333333334789999999999999888644 334331111
Q ss_pred hC-------------------------CCCChhhHHHHHHHHHHHHHHhCCCceeEEEecCchhh
Q 009535 172 YG-------------------------AWLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQ 211 (532)
Q Consensus 172 ~g-------------------------gw~~~~~~~~f~~ya~~~~~~fgd~v~~w~t~NEp~~~ 211 (532)
.. -++||+..+.|.+..+.+ ...| ---+|+=+|||..+
T Consensus 106 ~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~-~~~G-vdg~w~D~~Ep~~~ 168 (317)
T cd06598 106 KAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKL-IDQG-VTGWWGDLGEPEVH 168 (317)
T ss_pred hCCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHh-hhCC-ccEEEecCCCcccc
Confidence 01 156899999888877765 2232 23567888999643
No 97
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=43.26 E-value=84 Score=34.44 Aligned_cols=52 Identities=13% Similarity=0.086 Sum_probs=39.7
Q ss_pred hHHHHHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecCCCCc
Q 009535 100 YLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSP 165 (532)
Q Consensus 100 y~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~P 165 (532)
-++|++++.+.|++.+|+.++-+.+. -....|+.+++.|+.+.+++..-+-|
T Consensus 98 v~~~v~~A~~~Gvd~irif~~lnd~~--------------n~~~~v~~ak~~G~~v~~~i~~t~~p 149 (448)
T PRK12331 98 VESFVQKSVENGIDIIRIFDALNDVR--------------NLETAVKATKKAGGHAQVAISYTTSP 149 (448)
T ss_pred HHHHHHHHHHCCCCEEEEEEecCcHH--------------HHHHHHHHHHHcCCeEEEEEEeecCC
Confidence 36677999999999999998665441 24568899999999888877764445
No 98
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=42.56 E-value=96 Score=32.70 Aligned_cols=52 Identities=10% Similarity=0.207 Sum_probs=43.1
Q ss_pred HHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEe
Q 009535 104 IDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTL 159 (532)
Q Consensus 104 i~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL 159 (532)
++.++++|.+++-+-+-|. |+.. ..+|..-+++..++.++|.+.||.-++-+
T Consensus 112 ve~a~~~GAdAVk~lv~~~---~d~~-~~~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 112 VRRIKEAGADAVKLLLYYR---PDED-DAINDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred HHHHHHcCCCEEEEEEEeC---CCcc-hHHHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 5779999999999999987 5431 34577888999999999999999877754
No 99
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=42.46 E-value=46 Score=38.45 Aligned_cols=57 Identities=25% Similarity=0.385 Sum_probs=40.3
Q ss_pred HHHHHHcCCCeeEe----ccccceeecCC-C--------------CCC--CCh---hHHHHHHHHHHHHHHcCCccEEEe
Q 009535 104 IDLMESLGVNSYRF----SISWARILPKG-R--------------FGD--VNS---EGINHYNKLIDALLLKGIQPFVTL 159 (532)
Q Consensus 104 i~l~k~lG~~~~R~----si~W~ri~P~~-~--------------~g~--~n~---~~l~~y~~~i~~l~~~gi~pivtL 159 (532)
|+-+|+||++++.+ ++.+-+...+. . +|. -+. ..+.=++.+|++|.++||++|+++
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDV 285 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDV 285 (697)
T ss_pred HHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEE
Confidence 89999999999993 44444444322 0 011 122 257778999999999999999976
Q ss_pred c
Q 009535 160 T 160 (532)
Q Consensus 160 ~ 160 (532)
.
T Consensus 286 V 286 (697)
T COG1523 286 V 286 (697)
T ss_pred e
Confidence 4
No 100
>PRK14705 glycogen branching enzyme; Provisional
Probab=42.16 E-value=1.2e+02 Score=37.58 Aligned_cols=88 Identities=22% Similarity=0.308 Sum_probs=54.7
Q ss_pred HHHHHHcCCCeeEecc--------ccc--ee---ecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEec--CCCCcHhH
Q 009535 104 IDLMESLGVNSYRFSI--------SWA--RI---LPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLT--QFDSPQEI 168 (532)
Q Consensus 104 i~l~k~lG~~~~R~si--------~W~--ri---~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~--H~~~P~~l 168 (532)
|+-+|+||++++-+.= +|- -. -|++..|+ .+=++.+|++|.++||.+|+++. |+..=.|.
T Consensus 772 ldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt-----~~dfk~lVd~~H~~GI~VILD~V~nH~~~d~~~ 846 (1224)
T PRK14705 772 VDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGH-----PDEFRFLVDSLHQAGIGVLLDWVPAHFPKDSWA 846 (1224)
T ss_pred HHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCC-----HHHHHHHHHHHHHCCCEEEEEeccccCCcchhh
Confidence 6889999999986542 231 00 11111122 34478999999999999999865 54211111
Q ss_pred HHh----------------hCC-------CCChhhHHHHHHHHHHHHHHhC
Q 009535 169 EDK----------------YGA-------WLSPESQEDFGYFADICFKSFG 196 (532)
Q Consensus 169 ~~~----------------~gg-------w~~~~~~~~f~~ya~~~~~~fg 196 (532)
... +.. +.++++.+.+.+=+..-+++|+
T Consensus 847 l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyh 897 (1224)
T PRK14705 847 LAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFH 897 (1224)
T ss_pred hhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 000 011 3457788888888888888884
No 101
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=41.50 E-value=1.1e+02 Score=32.84 Aligned_cols=103 Identities=19% Similarity=0.264 Sum_probs=60.4
Q ss_pred HHHHHHHHHcCCCeeEecc-cc-ceeecCCCCC-CCChhHHHHHHHHHHHHHHcCCc-cEEEecCCCCcHhHHHhhCCCC
Q 009535 101 LEDIDLMESLGVNSYRFSI-SW-ARILPKGRFG-DVNSEGINHYNKLIDALLLKGIQ-PFVTLTQFDSPQEIEDKYGAWL 176 (532)
Q Consensus 101 ~eDi~l~k~lG~~~~R~si-~W-~ri~P~~~~g-~~n~~~l~~y~~~i~~l~~~gi~-pivtL~H~~~P~~l~~~~ggw~ 176 (532)
++.++.|+++|+|.+-+++ +- .++...= | ..+. +-..+.++.+++.|+. +-++|. +++|.
T Consensus 115 ~e~l~~l~~~GvnrislGvQS~~d~~L~~l--~R~~~~---~~~~~ai~~l~~~G~~~v~~dlI-~GlPg---------- 178 (400)
T PRK07379 115 LEQLQGYRSLGVNRVSLGVQAFQDELLALC--GRSHRV---KDIFAAVDLIHQAGIENFSLDLI-SGLPH---------- 178 (400)
T ss_pred HHHHHHHHHCCCCEEEEEcccCCHHHHHHh--CCCCCH---HHHHHHHHHHHHcCCCeEEEEee-cCCCC----------
Confidence 6889999999999777766 22 2222211 2 2233 3346788999999998 556664 56663
Q ss_pred ChhhHHHHHHHHHHHHHHhCCCceeEEEecCchhhhhcccccCCC
Q 009535 177 SPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQVTLSYRLGCH 221 (532)
Q Consensus 177 ~~~~~~~f~~ya~~~~~~fgd~v~~w~t~NEp~~~~~~gy~~g~~ 221 (532)
++.+.+.+=++.+.+-=-+.|..+...-||......-+..|.+
T Consensus 179 --qt~e~~~~tl~~~~~l~p~~is~y~L~~~pgT~l~~~~~~g~~ 221 (400)
T PRK07379 179 --QTLEDWQASLEAAIALNPTHLSCYDLVLEPGTAFGKQYQPGKA 221 (400)
T ss_pred --CCHHHHHHHHHHHHcCCCCEEEEecceecCCchhHHHhhcCCC
Confidence 2234444444444433335677776667887654443444443
No 102
>PRK14706 glycogen branching enzyme; Provisional
Probab=41.21 E-value=88 Score=35.89 Aligned_cols=90 Identities=17% Similarity=0.146 Sum_probs=52.2
Q ss_pred HHHHHcCCCeeEeccccceeecCC-CCC-------CCCh--hHHHHHHHHHHHHHHcCCccEEEec--CCC---------
Q 009535 105 DLMESLGVNSYRFSISWARILPKG-RFG-------DVNS--EGINHYNKLIDALLLKGIQPFVTLT--QFD--------- 163 (532)
Q Consensus 105 ~l~k~lG~~~~R~si~W~ri~P~~-~~g-------~~n~--~~l~~y~~~i~~l~~~gi~pivtL~--H~~--------- 163 (532)
+-+|+||++++-+.=- --.|.. .-| .++. -..+=++.+|++|.++||++|+.+. |+.
T Consensus 175 ~ylk~lG~t~velmPv--~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~~l~~~ 252 (639)
T PRK14706 175 EYVTYMGYTHVELLGV--MEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDESGLAHF 252 (639)
T ss_pred HHHHHcCCCEEEccch--hcCCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEecccccCcchhhhhcc
Confidence 5689999999875421 001111 001 0010 1234478999999999999998764 432
Q ss_pred --CcHh-HHHhhCC----C-------CChhhHHHHHHHHHHHHHHhC
Q 009535 164 --SPQE-IEDKYGA----W-------LSPESQEDFGYFADICFKSFG 196 (532)
Q Consensus 164 --~P~~-l~~~~gg----w-------~~~~~~~~f~~ya~~~~~~fg 196 (532)
.|.+ ..+...| | .++++.+.+.+=++.-++.|+
T Consensus 253 dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~ 299 (639)
T PRK14706 253 DGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFH 299 (639)
T ss_pred CCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 1211 0110011 2 257888888888888888884
No 103
>PRK09505 malS alpha-amylase; Reviewed
Probab=41.03 E-value=38 Score=39.14 Aligned_cols=61 Identities=23% Similarity=0.412 Sum_probs=41.2
Q ss_pred hHHHHHHHHHcCCCeeEeccccceee-----------cC-CCCC-------CCCh--hHHHHHHHHHHHHHHcCCccEEE
Q 009535 100 YLEDIDLMESLGVNSYRFSISWARIL-----------PK-GRFG-------DVNS--EGINHYNKLIDALLLKGIQPFVT 158 (532)
Q Consensus 100 y~eDi~l~k~lG~~~~R~si~W~ri~-----------P~-~~~g-------~~n~--~~l~~y~~~i~~l~~~gi~pivt 158 (532)
..+=++-+++||++++=++=-...+. |. ..-| .+|+ -..+=++++|+++.++||++|+.
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 55668889999999999875444331 10 0001 1222 13466899999999999999997
Q ss_pred ec
Q 009535 159 LT 160 (532)
Q Consensus 159 L~ 160 (532)
+.
T Consensus 312 ~V 313 (683)
T PRK09505 312 VV 313 (683)
T ss_pred EC
Confidence 64
No 104
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=40.94 E-value=1.5e+02 Score=31.16 Aligned_cols=108 Identities=17% Similarity=0.152 Sum_probs=63.2
Q ss_pred hHHHHHHHHHcCCCe--eEeccccceeecCCCCCCCChhHHHHH--HHHHHHHHHcCCccEEEecCCCCc--------Hh
Q 009535 100 YLEDIDLMESLGVNS--YRFSISWARILPKGRFGDVNSEGINHY--NKLIDALLLKGIQPFVTLTQFDSP--------QE 167 (532)
Q Consensus 100 y~eDi~l~k~lG~~~--~R~si~W~ri~P~~~~g~~n~~~l~~y--~~~i~~l~~~gi~pivtL~H~~~P--------~~ 167 (532)
.++-++.+++.|+.. +=+.+.|..- .++ =++|.+-.-=- .++|+.|+++|++.++.+.-+-.+ .+
T Consensus 26 v~~~~~~~r~~~iP~d~i~lD~~~~~~--~~~-f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~~~~~ 102 (339)
T cd06602 26 VKEVVENMRAAGIPLDVQWNDIDYMDR--RRD-FTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAISANEPTGSYPPY 102 (339)
T ss_pred HHHHHHHHHHhCCCcceEEECcccccC--ccc-eecccccCCCccHHHHHHHHHHCCCEEEEEEeCccccCcCCCCCHHH
Confidence 455566666666543 3344455421 110 12333222222 789999999999988887654333 22
Q ss_pred HHH--h-----------h--------C---CCCChhhHHHHHHHHHHHHHHhCCCceeEEEecCchhh
Q 009535 168 IED--K-----------Y--------G---AWLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQ 211 (532)
Q Consensus 168 l~~--~-----------~--------g---gw~~~~~~~~f~~ya~~~~~~fgd~v~~w~t~NEp~~~ 211 (532)
-+. + + + -++||+.++.|.+..+.+....|- .-+|+=+|||..+
T Consensus 103 ~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gv-dg~w~D~~Ep~~~ 169 (339)
T cd06602 103 DRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQVPF-DGLWIDMNEPSNF 169 (339)
T ss_pred HHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhcCCC-cEEEecCCCCchH
Confidence 110 0 0 0 267888888888777766665543 4678888999743
No 105
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=40.65 E-value=60 Score=36.51 Aligned_cols=63 Identities=14% Similarity=0.391 Sum_probs=42.4
Q ss_pred hhhchHHHHHHHHHcCCCeeEeccccceeecCCCCC-------CCCh--hHHHHHHHHHHHHHHcCCccEEEec
Q 009535 96 HYHRYLEDIDLMESLGVNSYRFSISWARILPKGRFG-------DVNS--EGINHYNKLIDALLLKGIQPFVTLT 160 (532)
Q Consensus 96 ~y~ry~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g-------~~n~--~~l~~y~~~i~~l~~~gi~pivtL~ 160 (532)
-+.-..+.++-+++||++++=++=-+.. |...-| .+|+ -..+-++++|+++.++||++|+++.
T Consensus 31 dl~gi~~~ldyl~~lGv~~i~l~P~~~~--~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V 102 (551)
T PRK10933 31 DLRGVTQRLDYLQKLGVDAIWLTPFYVS--PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMV 102 (551)
T ss_pred CHHHHHHhhHHHHhCCCCEEEECCCCCC--CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 3445678899999999999977653321 211001 1111 1345689999999999999999775
No 106
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=40.62 E-value=71 Score=37.90 Aligned_cols=56 Identities=25% Similarity=0.325 Sum_probs=41.7
Q ss_pred hchHHHHHHHHHcCCCeeEeccc---------------cceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEec
Q 009535 98 HRYLEDIDLMESLGVNSYRFSIS---------------WARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLT 160 (532)
Q Consensus 98 ~ry~eDi~l~k~lG~~~~R~si~---------------W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~ 160 (532)
....+-+.-+++||++++=+|=- +.+|.|.- | +.+=++++|++++++||.+|+++.
T Consensus 20 ~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~l--G-----t~e~f~~Lv~aah~~Gi~VIlDiV 90 (879)
T PRK14511 20 DDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPEL--G-----GEEGLRRLAAALRAHGMGLILDIV 90 (879)
T ss_pred HHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCC--C-----CHHHHHHHHHHHHHCCCEEEEEec
Confidence 44678889999999999866543 33444442 2 335579999999999999999764
No 107
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=40.43 E-value=1.3e+02 Score=31.43 Aligned_cols=58 Identities=10% Similarity=0.257 Sum_probs=48.9
Q ss_pred HHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecCCCCc
Q 009535 104 IDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSP 165 (532)
Q Consensus 104 i~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~P 165 (532)
.+.+|++|.+++.|=+=|. |+++ ..+|..-.++.+++.++|++.||-=++-+.-++.+
T Consensus 111 ~~rike~GadavK~Llyy~---pD~~-~~in~~k~a~vervg~eC~a~dipf~lE~ltY~~~ 168 (324)
T PRK12399 111 AKRIKEEGADAVKFLLYYD---VDEP-DEINEQKKAYIERIGSECVAEDIPFFLEILTYDEK 168 (324)
T ss_pred HHHHHHhCCCeEEEEEEEC---CCCC-HHHHHHHHHHHHHHHHHHHHCCCCeEEEEeeccCc
Confidence 6889999999999999886 5653 46888888999999999999999888877765544
No 108
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=39.68 E-value=1.4e+02 Score=30.83 Aligned_cols=108 Identities=13% Similarity=0.156 Sum_probs=60.0
Q ss_pred hHHHHHHHHHcCCC--eeEeccccceeecCCCCC--CCChhHHHHHHHHHHHHHHcCCccEEEecCC---CCcHhHHHh-
Q 009535 100 YLEDIDLMESLGVN--SYRFSISWARILPKGRFG--DVNSEGINHYNKLIDALLLKGIQPFVTLTQF---DSPQEIEDK- 171 (532)
Q Consensus 100 y~eDi~l~k~lG~~--~~R~si~W~ri~P~~~~g--~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~---~~P~~l~~~- 171 (532)
.++-++.+++.|+. ++=+.+.|.. ..+- + ++|.+-.---.++|+.|+++|+++++.++-+ +.+.+-+-+
T Consensus 26 v~~~~~~~~~~~iP~d~i~lD~~~~~--~~~~-~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~~~~~~y~e~~~ 102 (319)
T cd06591 26 LLDVAKEYRKRGIPLDVIVQDWFYWP--KQGW-GEWKFDPERFPDPKAMVRELHEMNAELMISIWPTFGPETENYKEMDE 102 (319)
T ss_pred HHHHHHHHHHhCCCccEEEEechhhc--CCCc-eeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCcCCCChhHHHHHH
Confidence 34555666666544 4434433321 1110 1 2344333334799999999999988876432 122221100
Q ss_pred --------h-----------CC---CCChhhHHHHHHHHHHHHHHhCCCceeEEEecCchhh
Q 009535 172 --------Y-----------GA---WLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQ 211 (532)
Q Consensus 172 --------~-----------gg---w~~~~~~~~f~~ya~~~~~~fgd~v~~w~t~NEp~~~ 211 (532)
. ++ |+||+.++.|.+..+..+...|- --+|+=+|||..+
T Consensus 103 ~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gv-dg~w~D~~Ep~~~ 163 (319)
T cd06591 103 KGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLKKNYYDKGV-DAWWLDAAEPEYS 163 (319)
T ss_pred CCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHHHHhhcCCC-cEEEecCCCCCcc
Confidence 0 11 67788888876665554444433 5678889999864
No 109
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=39.52 E-value=1.4e+02 Score=31.31 Aligned_cols=91 Identities=14% Similarity=0.173 Sum_probs=63.2
Q ss_pred HHHHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecCCCCcHhHHHhhCCCCChhhH
Q 009535 102 EDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQ 181 (532)
Q Consensus 102 eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~P~~l~~~~ggw~~~~~~ 181 (532)
-+.+.+|++|.+++.|=+=|. |+++ -.+|..-.++.+++.++|++.||-=++-+.-++.+.-- . .+++..
T Consensus 111 ws~~rike~GadavK~Llyy~---pD~~-~ein~~k~a~vervg~eC~a~dipf~lE~l~Yd~~~~d--~----~~~eya 180 (329)
T PRK04161 111 WSVKRLKEAGADAVKFLLYYD---VDGD-EEINDQKQAYIERIGSECTAEDIPFFLELLTYDERISD--N----NSAAYA 180 (329)
T ss_pred hhHHHHHHhCCCeEEEEEEEC---CCCC-HHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCcccc--c----ccHHHH
Confidence 356889999999999999886 5543 46888888999999999999999988888766544311 1 223333
Q ss_pred HHHHHHHHHHHHHhCC---CceeE
Q 009535 182 EDFGYFADICFKSFGD---RVKYW 202 (532)
Q Consensus 182 ~~f~~ya~~~~~~fgd---~v~~w 202 (532)
+..-+.+-..++.|++ .|+.|
T Consensus 181 k~kP~~V~~amkefs~~~~gvDVl 204 (329)
T PRK04161 181 KLKPHKVNGAMKVFSDKRFGVDVL 204 (329)
T ss_pred hhChHHHHHHHHHhccCCCCCcEE
Confidence 3333335555666765 45544
No 110
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=39.20 E-value=87 Score=32.00 Aligned_cols=60 Identities=20% Similarity=0.335 Sum_probs=47.9
Q ss_pred hHHHHHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEe
Q 009535 100 YLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTL 159 (532)
Q Consensus 100 y~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL 159 (532)
-++|++.+.+.|++.+-+.++=|...-....+.=-++.++.+.++|+.++++|+++-+++
T Consensus 76 ~~~die~A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ 135 (279)
T cd07947 76 NKEDLKLVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL 135 (279)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 379999999999999998886655443322244456788999999999999999998888
No 111
>PF06291 Lambda_Bor: Bor protein; InterPro: IPR010438 This family consists of several Bacteriophage lambda Bor and Escherichia coli Iss proteins. Expression of bor significantly increases the survival of the E. coli host cell in animal serum. This property is a well known bacterial virulence determinant indeed, bor and its adjacent sequences are highly homologous to the iss serum resistance locus of the plasmid ColV2-K94, which confers virulence in animals. It has been suggested that lysogeny may generally have a role in bacterial survival in animal hosts, and perhaps in pathogenesis [].
Probab=39.05 E-value=29 Score=29.75 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=15.7
Q ss_pred HHHHHHhhhhhhhcccccccCC
Q 009535 18 FLLMMLLSPLFISCDQTTLKQS 39 (532)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~ 39 (532)
++++..|.+++++|.+++....
T Consensus 4 ~ll~~~lallLtgCatqt~~~~ 25 (97)
T PF06291_consen 4 LLLAAALALLLTGCATQTFTVG 25 (97)
T ss_pred HHHHHHHHHHHcccceeEEEeC
Confidence 3555566678899999988543
No 112
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=38.82 E-value=77 Score=31.20 Aligned_cols=68 Identities=18% Similarity=0.200 Sum_probs=42.8
Q ss_pred hhhhchHHHHHHHHHcCCCeeEeccccceeecCCC-CCCCChhHHHHHHHHHHHHHHcCCccEEEe-cCCCCc
Q 009535 95 DHYHRYLEDIDLMESLGVNSYRFSISWARILPKGR-FGDVNSEGINHYNKLIDALLLKGIQPFVTL-TQFDSP 165 (532)
Q Consensus 95 d~y~ry~eDi~l~k~lG~~~~R~si~W~ri~P~~~-~g~~n~~~l~~y~~~i~~l~~~gi~pivtL-~H~~~P 165 (532)
++-+++++=|+++++||.+.+|+...+. |... ..+.....++..+++.+.+.+.||...+=- ++++.|
T Consensus 81 ~~~~~~~~~i~~a~~lg~~~i~~~~g~~---~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~ 150 (254)
T TIGR03234 81 EFREGVALAIAYARALGCPQVNCLAGKR---PAGVSPEEARATLVENLRYAADALDRIGLTLLIEPINSFDMP 150 (254)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEECcCCC---CCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCC
Confidence 3446677889999999999998644321 1110 011223344667888888999999866633 445554
No 113
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=38.25 E-value=17 Score=30.17 Aligned_cols=19 Identities=42% Similarity=0.677 Sum_probs=13.8
Q ss_pred HHHHhCC--CceeEEEecC-ch
Q 009535 191 CFKSFGD--RVKYWFTINE-PN 209 (532)
Q Consensus 191 ~~~~fgd--~v~~w~t~NE-p~ 209 (532)
++++||+ +|.+|-.+|| |+
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~ 22 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPN 22 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-
T ss_pred CchhhcCCCCEEEEEeecCCCC
Confidence 3567766 8999999999 66
No 114
>PF13627 LPAM_2: Prokaryotic lipoprotein-attachment site
Probab=38.05 E-value=25 Score=22.29 Aligned_cols=18 Identities=28% Similarity=0.475 Sum_probs=13.0
Q ss_pred HHHHHhhhhhhhcccccc
Q 009535 19 LLMMLLSPLFISCDQTTL 36 (532)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~ 36 (532)
+++++++..+++|++.+-
T Consensus 3 ~~~~~~~~~LsgCG~KGp 20 (24)
T PF13627_consen 3 LLLLALALALSGCGQKGP 20 (24)
T ss_pred HHHHHHHHHHHhcccCCC
Confidence 455666777799998763
No 115
>PRK03705 glycogen debranching enzyme; Provisional
Probab=37.74 E-value=62 Score=37.24 Aligned_cols=55 Identities=16% Similarity=0.373 Sum_probs=37.3
Q ss_pred HHHHHHcCCCeeEeccc-----------------c-------ceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEe
Q 009535 104 IDLMESLGVNSYRFSIS-----------------W-------ARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTL 159 (532)
Q Consensus 104 i~l~k~lG~~~~R~si~-----------------W-------~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL 159 (532)
|+-||+||++++-+.=- | -.+.|.= |.-....++=+++||++|.++||++|+.+
T Consensus 185 LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~y--gt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 185 IAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAY--ASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred hHHHHHcCCCEEEecCcccCCCcccccccccccccCccccccccccccc--CCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 88999999999975321 1 1222221 22111245668999999999999999976
Q ss_pred c
Q 009535 160 T 160 (532)
Q Consensus 160 ~ 160 (532)
.
T Consensus 263 V 263 (658)
T PRK03705 263 V 263 (658)
T ss_pred c
Confidence 4
No 116
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=37.71 E-value=2.6e+02 Score=30.00 Aligned_cols=89 Identities=19% Similarity=0.290 Sum_probs=58.7
Q ss_pred ccchhhhchHHHHHHHHHc-CCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccE-EEecCCCCcHhHH
Q 009535 92 VAVDHYHRYLEDIDLMESL-GVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPF-VTLTQFDSPQEIE 169 (532)
Q Consensus 92 ~a~d~y~ry~eDi~l~k~l-G~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pi-vtL~H~~~P~~l~ 169 (532)
.+.+-.++ -+|++.+..| ++. .++++- .|.+ .. ..+.++.+.+.++||+.. ++...|..|.+
T Consensus 35 ~~r~~~e~-~~d~~~v~~L~~~~-~~v~lH----~~~d--~~------~d~~~~~~~l~~~GL~v~~i~p~~f~~~~~-- 98 (378)
T TIGR02635 35 AARNVFEK-IEDAALVHRLTGIC-PTVALH----IPWD--RV------EDYEELARYAEELGLKIGAINPNLFQDDDY-- 98 (378)
T ss_pred CCCCHHHH-HHHHHHHHhhcCCC-Cceeec----cCCc--cc------cCHHHHHHHHHHcCCceeeeeCCccCCccc--
Confidence 44444444 6788888888 555 666662 2222 11 225788888999999987 77777766654
Q ss_pred HhhCCCCCh--hhHHHHHHHHHHHH---HHhCC
Q 009535 170 DKYGAWLSP--ESQEDFGYFADICF---KSFGD 197 (532)
Q Consensus 170 ~~~ggw~~~--~~~~~f~~ya~~~~---~~fgd 197 (532)
++|.++|+ ++.+.-.++++.|. +.+|.
T Consensus 99 -~~GSLt~pD~~vR~~AIe~~k~~idiA~eLGa 130 (378)
T TIGR02635 99 -KFGSLTHPDKRIRRKAIDHLLECVDIAKKTGS 130 (378)
T ss_pred -CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34788775 66677777777765 56766
No 117
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=37.52 E-value=79 Score=31.81 Aligned_cols=79 Identities=11% Similarity=0.055 Sum_probs=52.3
Q ss_pred HHHHHHHHHcC----CCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecCCCCcHhHHHhhCCCC
Q 009535 101 LEDIDLMESLG----VNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWL 176 (532)
Q Consensus 101 ~eDi~l~k~lG----~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~P~~l~~~~ggw~ 176 (532)
.+|++++.+.| ++.+|+.++-|.+.-....+.=-.+.++-..+.|..+++.|+++.++..+ .+-
T Consensus 72 ~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~-----------~~~- 139 (268)
T cd07940 72 KKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAED-----------ATR- 139 (268)
T ss_pred HhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeec-----------CCC-
Confidence 78999999999 99999987655442221113222356777889999999999986654421 222
Q ss_pred ChhhHHHHHHHHHHHHH
Q 009535 177 SPESQEDFGYFADICFK 193 (532)
Q Consensus 177 ~~~~~~~f~~ya~~~~~ 193 (532)
...+.+.+.++.+.+
T Consensus 140 --~~~~~~~~~~~~~~~ 154 (268)
T cd07940 140 --TDLDFLIEVVEAAIE 154 (268)
T ss_pred --CCHHHHHHHHHHHHH
Confidence 235666777777654
No 118
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=36.08 E-value=1.6e+02 Score=31.02 Aligned_cols=96 Identities=17% Similarity=0.131 Sum_probs=54.8
Q ss_pred HHHHHHHHHcCCCeeEeccc--cceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecCCCCcHhHHHhhCCCCCh
Q 009535 101 LEDIDLMESLGVNSYRFSIS--WARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSP 178 (532)
Q Consensus 101 ~eDi~l~k~lG~~~~R~si~--W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~P~~l~~~~ggw~~~ 178 (532)
+|.+++|+++|++.+-+++. -.++...=. ...+. +-..+.|+.+++.|+..+..-.=+++|. +
T Consensus 100 ~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~-r~~~~---~~~~~~i~~l~~~g~~~v~~dli~GlPg---------q-- 164 (377)
T PRK08599 100 KEKLQVLKDSGVNRISLGVQTFNDELLKKIG-RTHNE---EDVYEAIANAKKAGFDNISIDLIYALPG---------Q-- 164 (377)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHcC-CCCCH---HHHHHHHHHHHHcCCCcEEEeeecCCCC---------C--
Confidence 68899999999997777772 223333211 12333 4567899999999997443222356663 2
Q ss_pred hhHHHHHHHHHHHHHHhCCCceeEEEecCchhhh
Q 009535 179 ESQEDFGYFADICFKSFGDRVKYWFTINEPNMQV 212 (532)
Q Consensus 179 ~~~~~f~~ya~~~~~~fgd~v~~w~t~NEp~~~~ 212 (532)
+.+.|.+=.+.+.+.=-+.|..+...-+|....
T Consensus 165 -t~~~~~~~l~~~~~l~~~~i~~y~l~~~pgT~~ 197 (377)
T PRK08599 165 -TIEDFKESLAKALALDIPHYSAYSLILEPKTVF 197 (377)
T ss_pred -CHHHHHHHHHHHHccCCCEEeeeceeecCCChh
Confidence 234444444444332223444444445666443
No 119
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=35.49 E-value=2.2e+02 Score=29.80 Aligned_cols=46 Identities=13% Similarity=0.137 Sum_probs=37.6
Q ss_pred HHHHHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEec
Q 009535 101 LEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLT 160 (532)
Q Consensus 101 ~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~ 160 (532)
.+|++.+.+.|++.+|+....+.. +--.+.|+.+++.|+++.+.+.
T Consensus 90 ~~dl~~a~~~gvd~iri~~~~~e~--------------d~~~~~i~~ak~~G~~v~~~l~ 135 (333)
T TIGR03217 90 VHDLKAAYDAGARTVRVATHCTEA--------------DVSEQHIGMARELGMDTVGFLM 135 (333)
T ss_pred HHHHHHHHHCCCCEEEEEeccchH--------------HHHHHHHHHHHHcCCeEEEEEE
Confidence 689999999999999988754332 2246899999999999988874
No 120
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=35.27 E-value=1.3e+02 Score=31.65 Aligned_cols=68 Identities=16% Similarity=0.170 Sum_probs=49.9
Q ss_pred HHHHHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecCCCCcHhHHHhhCCCCChhh
Q 009535 101 LEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPES 180 (532)
Q Consensus 101 ~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~P~~l~~~~ggw~~~~~ 180 (532)
.+|++...+.|++.+|+....++. +--.+.|+.+++.|+++.+++..- + ...
T Consensus 91 ~~dl~~a~~~gvd~iri~~~~~e~--------------~~~~~~i~~ak~~G~~v~~~l~~a-----------~---~~~ 142 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATHCTEA--------------DVSEQHIGLARELGMDTVGFLMMS-----------H---MAP 142 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEecchH--------------HHHHHHHHHHHHCCCeEEEEEEec-----------c---CCC
Confidence 589999999999999998755442 224789999999999999988632 1 123
Q ss_pred HHHHHHHHHHHHHHhCC
Q 009535 181 QEDFGYFADICFKSFGD 197 (532)
Q Consensus 181 ~~~f~~ya~~~~~~fgd 197 (532)
.+.+++.++.+. .+|-
T Consensus 143 ~e~l~~~a~~~~-~~Ga 158 (337)
T PRK08195 143 PEKLAEQAKLME-SYGA 158 (337)
T ss_pred HHHHHHHHHHHH-hCCC
Confidence 566777777754 4553
No 121
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=35.23 E-value=2.2e+02 Score=30.61 Aligned_cols=92 Identities=18% Similarity=0.236 Sum_probs=59.8
Q ss_pred chHHHHHHHHHcCCCeeEecccccee-----------ecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEec-------
Q 009535 99 RYLEDIDLMESLGVNSYRFSISWARI-----------LPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLT------- 160 (532)
Q Consensus 99 ry~eDi~l~k~lG~~~~R~si~W~ri-----------~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~------- 160 (532)
...+-++.++++|++.+=+.=-|..- .|+. .++ +.| ...+++.+++.||++=+=+-
T Consensus 59 ~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~--~kF-P~G---l~~l~~~i~~~Gmk~GlW~ePe~v~~~ 132 (394)
T PF02065_consen 59 KILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDP--KKF-PNG---LKPLADYIHSLGMKFGLWFEPEMVSPD 132 (394)
T ss_dssp HHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBT--TTS-TTH---HHHHHHHHHHTT-EEEEEEETTEEESS
T ss_pred HHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeECh--hhh-CCc---HHHHHHHHHHCCCeEEEEeccccccch
Confidence 45666788999999988888889643 3332 222 134 47999999999999655220
Q ss_pred ---CCCCcHhHHHhhC-----C-------CCChhhHHHHHHHHHHHHHHhC
Q 009535 161 ---QFDSPQEIEDKYG-----A-------WLSPESQEDFGYFADICFKSFG 196 (532)
Q Consensus 161 ---H~~~P~~l~~~~g-----g-------w~~~~~~~~f~~ya~~~~~~fg 196 (532)
.-..|.|+....+ | ..+|++.++..+-...+++.+|
T Consensus 133 S~l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~g 183 (394)
T PF02065_consen 133 SDLYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWG 183 (394)
T ss_dssp SCHCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhcC
Confidence 1245888743101 1 4678888988888888888876
No 122
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=35.02 E-value=1.1e+02 Score=35.88 Aligned_cols=100 Identities=21% Similarity=0.323 Sum_probs=63.3
Q ss_pred cCCCeeEeccc-cceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecC---CCCcHhHHH--h-------h----
Q 009535 110 LGVNSYRFSIS-WARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQ---FDSPQEIED--K-------Y---- 172 (532)
Q Consensus 110 lG~~~~R~si~-W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H---~~~P~~l~~--~-------~---- 172 (532)
+=++++++.+. |.+ .-+. =++|..-.---+.+|+.|++.||+.++.+.. -|.|..-+- + -
T Consensus 294 IP~d~~~lD~~~~~~--~~~~-F~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~~~~~e~~~~Gy~~k~~~g~~~ 370 (772)
T COG1501 294 IPLDVFVLDIDFWMD--NWGD-FTWDPDRFPDPKQMIAELHEKGIKLIVIINPYIKQDSPLFKEAIEKGYFVKDPDGEIY 370 (772)
T ss_pred CcceEEEEeehhhhc--cccc-eEECcccCCCHHHHHHHHHhcCceEEEEeccccccCCchHHHHHHCCeEEECCCCCEe
Confidence 56789999995 876 1110 1344433333469999999999998888764 233333221 1 0
Q ss_pred --------C---CCCChhhHHHHHHHHHHHHHHhCCCceeEEEecCchhhhh
Q 009535 173 --------G---AWLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQVT 213 (532)
Q Consensus 173 --------g---gw~~~~~~~~f~~ya~~~~~~fgd~v~~w~t~NEp~~~~~ 213 (532)
+ -++||+.++.|.+....-...+| -.-+|.=+|||.+...
T Consensus 371 ~~~~w~~~~a~~DFtnp~~r~Ww~~~~~~~l~d~G-v~g~W~D~nEp~~~~~ 421 (772)
T COG1501 371 QADFWPGNSAFPDFTNPDAREWWASDKKKNLLDLG-VDGFWNDMNEPEPFDG 421 (772)
T ss_pred eecccCCcccccCCCCHHHHHHHHHHHHhHHHhcC-ccEEEccCCCCccccc
Confidence 1 17889999999873333333343 3578899999997643
No 123
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=34.57 E-value=1.3e+02 Score=34.08 Aligned_cols=52 Identities=15% Similarity=0.105 Sum_probs=38.9
Q ss_pred hHHHHHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecCCCCc
Q 009535 100 YLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSP 165 (532)
Q Consensus 100 y~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~P 165 (532)
-++|++++.+.|++.+|+..+.+.+ +-....|+.++++|+.+.+++..-+.|
T Consensus 93 v~~~v~~a~~~Gvd~irif~~lnd~--------------~n~~~~i~~ak~~G~~v~~~i~~t~~p 144 (582)
T TIGR01108 93 VERFVKKAVENGMDVFRIFDALNDP--------------RNLQAAIQAAKKHGAHAQGTISYTTSP 144 (582)
T ss_pred HHHHHHHHHHCCCCEEEEEEecCcH--------------HHHHHHHHHHHHcCCEEEEEEEeccCC
Confidence 3556899999999999999776543 224667788888888888877665555
No 124
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=34.05 E-value=1.5e+02 Score=33.13 Aligned_cols=107 Identities=20% Similarity=0.210 Sum_probs=67.0
Q ss_pred HHHHHHHHHcCCCeeEeccc--cceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecCCCCcHhHHHhhCCCCCh
Q 009535 101 LEDIDLMESLGVNSYRFSIS--WARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSP 178 (532)
Q Consensus 101 ~eDi~l~k~lG~~~~R~si~--W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~P~~l~~~~ggw~~~ 178 (532)
+|.+++|+++|++.+-+++. -.++.-.-..| .+ ++-..+.++.+++.|+++.+.|. +++|.
T Consensus 206 ~e~L~~L~~~G~~rVslGVQS~~d~VL~~inRg-ht---~~~v~~Ai~~lr~~G~~v~~~LM-~GLPg------------ 268 (522)
T TIGR01211 206 EEHIDRMLKLGATRVELGVQTIYNDILERTKRG-HT---VRDVVEATRLLRDAGLKVVYHIM-PGLPG------------ 268 (522)
T ss_pred HHHHHHHHHcCCCEEEEECccCCHHHHHHhCCC-CC---HHHHHHHHHHHHHcCCeEEEEee-cCCCC------------
Confidence 68899999999998877772 23332221112 12 23346788889999998666553 56663
Q ss_pred hhHHHHHHHHHHHHH--HhC-CCceeEEEecCchhhhhcccccCCCCCC
Q 009535 179 ESQEDFGYFADICFK--SFG-DRVKYWFTINEPNMQVTLSYRLGCHPPA 224 (532)
Q Consensus 179 ~~~~~f~~ya~~~~~--~fg-d~v~~w~t~NEp~~~~~~gy~~g~~~Pg 224 (532)
+..+.+.+=++.+++ .++ |.|+.+.+.=.|......-|..|.|.|.
T Consensus 269 qt~e~~~~t~~~l~~~~~l~pD~Ikiypl~V~~gT~L~~~~~~G~y~p~ 317 (522)
T TIGR01211 269 SSFERDLEMFREIFEDPRFKPDMLKIYPTLVTRGTELYELWKRGEYKPY 317 (522)
T ss_pred CCHHHHHHHHHHHHhccCCCcCEEEEecceeeCCCHHHHHHHcCCCCCC
Confidence 224455555566665 343 5777777666777655555677777664
No 125
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=34.04 E-value=69 Score=33.57 Aligned_cols=72 Identities=15% Similarity=0.253 Sum_probs=50.8
Q ss_pred HHHHHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecCCCCcHhHHHhhCCCCChhh
Q 009535 101 LEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPES 180 (532)
Q Consensus 101 ~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~P~~l~~~~ggw~~~~~ 180 (532)
..-|++|.+.|++-+=.|+ +.|++ .+...+..+.++++.+.+.|+++||++. |+-|.. -||.- +.
T Consensus 19 ~~Yi~~~~~~Gf~~IFtsl----~~~~~----~~~~~~~~~~ell~~Anklg~~vivDvn----Psil~~--l~~S~-~~ 83 (360)
T COG3589 19 IAYIDRMHKYGFKRIFTSL----LIPEE----DAELYFHRFKELLKEANKLGLRVIVDVN----PSILKE--LNISL-DN 83 (360)
T ss_pred HHHHHHHHHcCccceeeec----ccCCc----hHHHHHHHHHHHHHHHHhcCcEEEEEcC----HHHHhh--cCCCh-HH
Confidence 4457889999997666554 23443 2235789999999999999999999985 887764 35533 34
Q ss_pred HHHHHHH
Q 009535 181 QEDFGYF 187 (532)
Q Consensus 181 ~~~f~~y 187 (532)
++.|.+.
T Consensus 84 l~~f~e~ 90 (360)
T COG3589 84 LSRFQEL 90 (360)
T ss_pred HHHHHHh
Confidence 5555544
No 126
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=33.83 E-value=88 Score=32.94 Aligned_cols=61 Identities=16% Similarity=0.195 Sum_probs=39.6
Q ss_pred HHHHHHHHHcCCCeeEeccc-cc-eeecCCCCCC-CChhHHHHHHHHHHHHHHcCCccEEEecCCCCcH
Q 009535 101 LEDIDLMESLGVNSYRFSIS-WA-RILPKGRFGD-VNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQ 166 (532)
Q Consensus 101 ~eDi~l~k~lG~~~~R~si~-W~-ri~P~~~~g~-~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~P~ 166 (532)
++.++.|+++|++.+.++|. -+ ++...= |. .+. +-+.+.|+.+++.|+.++-.-.=+++|.
T Consensus 100 ~e~l~~l~~~Gv~risiGvqS~~~~~l~~l--gR~~~~---~~~~~ai~~l~~~G~~~v~~dli~GlPg 163 (360)
T TIGR00539 100 AEWCKGLKGAGINRLSLGVQSFRDDKLLFL--GRQHSA---KNIAPAIETALKSGIENISLDLMYGLPL 163 (360)
T ss_pred HHHHHHHHHcCCCEEEEecccCChHHHHHh--CCCCCH---HHHHHHHHHHHHcCCCeEEEeccCCCCC
Confidence 68899999999997777763 32 232221 32 232 5567899999999998553322356663
No 127
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=32.86 E-value=1.9e+02 Score=30.29 Aligned_cols=107 Identities=16% Similarity=0.224 Sum_probs=57.2
Q ss_pred HHHHHHHHcC--CCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecCCCC-cHhHHHh--hCCCC
Q 009535 102 EDIDLMESLG--VNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDS-PQEIEDK--YGAWL 176 (532)
Q Consensus 102 eDi~l~k~lG--~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~-P~~l~~~--~ggw~ 176 (532)
+-++.+++.+ ++++=+.|.|..- .+. =++|.+..---.++++.|++.|++.++.+.-+-. -...... +--|+
T Consensus 28 ~v~~~~r~~~IP~D~i~lDidy~~~--~~~-Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~~g~~~~~~~~~pDft 104 (332)
T cd06601 28 EVVEGYRDNNIPLDGLHVDVDFQDN--YRT-FTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVISYGGGLGSPGLYPDLG 104 (332)
T ss_pred HHHHHHHHcCCCCceEEEcCchhcC--CCc-eeecCCCCCCHHHHHHHHHHCCCeEEEEecCceecCccCCCCceeeCCC
Confidence 3344444444 3455555555321 110 1334332222368999999999987775541100 0000000 11367
Q ss_pred ChhhHHHHHHHHHHHHHHhCCCceeEEEecCchhhhh
Q 009535 177 SPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQVT 213 (532)
Q Consensus 177 ~~~~~~~f~~ya~~~~~~fgd~v~~w~t~NEp~~~~~ 213 (532)
||+..+.|.+..+.+.+ .| -.-+|+=+|||.++..
T Consensus 105 np~ar~wW~~~~~~l~~-~G-v~~~W~DmnEp~~~~~ 139 (332)
T cd06601 105 RPDVREWWGNQYKYLFD-IG-LEFVWQDMTTPAIMPS 139 (332)
T ss_pred CHHHHHHHHHHHHHHHh-CC-CceeecCCCCcccccC
Confidence 88888887766554433 23 2358899999997654
No 128
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=32.70 E-value=2e+02 Score=30.02 Aligned_cols=71 Identities=20% Similarity=0.222 Sum_probs=49.0
Q ss_pred HHHHHHHHHcCCccEEEecCCCC-----cHhHHHhh---------C---------------CCCChhhHHHHHHHHHHHH
Q 009535 142 NKLIDALLLKGIQPFVTLTQFDS-----PQEIEDKY---------G---------------AWLSPESQEDFGYFADICF 192 (532)
Q Consensus 142 ~~~i~~l~~~gi~pivtL~H~~~-----P~~l~~~~---------g---------------gw~~~~~~~~f~~ya~~~~ 192 (532)
.++|+.|+++|++.++.++-+-. |..-+-+. | -++||+.++.|.+..+.+.
T Consensus 67 ~~mi~~L~~~G~k~~~~~~P~v~~~~~~~~y~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~ 146 (339)
T cd06603 67 EKMQEKLASKGRKLVTIVDPHIKRDDGYYVYKEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDK 146 (339)
T ss_pred HHHHHHHHHCCCEEEEEecCceecCCCCHHHHHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHh
Confidence 67999999999998887765432 22221110 0 2688999999998888776
Q ss_pred HHhC-CCceeEEEecCchhhh
Q 009535 193 KSFG-DRVKYWFTINEPNMQV 212 (532)
Q Consensus 193 ~~fg-d~v~~w~t~NEp~~~~ 212 (532)
...+ .-+-.|+=+|||.++.
T Consensus 147 ~~~~~g~~g~w~D~~Ep~~f~ 167 (339)
T cd06603 147 YKGSTENLYIWNDMNEPSVFN 167 (339)
T ss_pred hcccCCCceEEeccCCccccC
Confidence 5433 2357889999998653
No 129
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=32.48 E-value=2.6e+02 Score=27.98 Aligned_cols=46 Identities=20% Similarity=0.273 Sum_probs=37.9
Q ss_pred HHHHHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEec
Q 009535 101 LEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLT 160 (532)
Q Consensus 101 ~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~ 160 (532)
.+|++.+++.|++.+|+.++-+.+ .-..+.++.+++.|+++.+++.
T Consensus 88 ~~~i~~a~~~g~~~iri~~~~s~~--------------~~~~~~i~~ak~~G~~v~~~~~ 133 (263)
T cd07943 88 VDDLKMAADLGVDVVRVATHCTEA--------------DVSEQHIGAARKLGMDVVGFLM 133 (263)
T ss_pred HHHHHHHHHcCCCEEEEEechhhH--------------HHHHHHHHHHHHCCCeEEEEEE
Confidence 699999999999999998866543 1246789999999999988884
No 130
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=32.12 E-value=2.8e+02 Score=28.46 Aligned_cols=39 Identities=26% Similarity=0.316 Sum_probs=32.5
Q ss_pred eeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecCC
Q 009535 123 RILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQF 162 (532)
Q Consensus 123 ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~ 162 (532)
+..|... |-++.+-+.-++++++.++++|-..++=|.|-
T Consensus 62 ~~~~~~~-~~~~~~~~~~~~~~~~~vh~~g~~~~~Ql~h~ 100 (327)
T cd02803 62 KGYPGQL-GIYDDEQIPGLRKLTEAVHAHGAKIFAQLAHA 100 (327)
T ss_pred cCCCCCc-CcCCHHHHHHHHHHHHHHHhCCCHhhHHhhCC
Confidence 3344433 67899999999999999999999999999994
No 131
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=32.06 E-value=1.1e+02 Score=31.50 Aligned_cols=65 Identities=17% Similarity=0.370 Sum_probs=47.2
Q ss_pred chHHHHHHHHHcCCCeeEeccc----ccee---ecC-----------CCCCCCChhHHHHHHHHHHHHHHcCCccEEEec
Q 009535 99 RYLEDIDLMESLGVNSYRFSIS----WARI---LPK-----------GRFGDVNSEGINHYNKLIDALLLKGIQPFVTLT 160 (532)
Q Consensus 99 ry~eDi~l~k~lG~~~~R~si~----W~ri---~P~-----------~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~ 160 (532)
..++-|+.|+..++|.+.+-++ |+-= .|+ ...|.+.++- .+++++.++++||++|.-+
T Consensus 17 ~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~d---i~elv~yA~~rgI~viPEi- 92 (303)
T cd02742 17 SIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQ---LKDIIEYAAARGIEVIPEI- 92 (303)
T ss_pred HHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHHH---HHHHHHHHHHcCCEEEEec-
Confidence 4677799999999999988886 6321 122 1114566644 5899999999999988877
Q ss_pred CCCCcHhHH
Q 009535 161 QFDSPQEIE 169 (532)
Q Consensus 161 H~~~P~~l~ 169 (532)
|+|....
T Consensus 93 --D~PGH~~ 99 (303)
T cd02742 93 --DMPGHST 99 (303)
T ss_pred --cchHHHH
Confidence 7786543
No 132
>PRK10785 maltodextrin glucosidase; Provisional
Probab=31.61 E-value=73 Score=36.19 Aligned_cols=57 Identities=16% Similarity=0.201 Sum_probs=38.7
Q ss_pred hHHHHHHHHHcCCCeeEeccccceeecCCCC-C-------CCCh--hHHHHHHHHHHHHHHcCCccEEEec
Q 009535 100 YLEDIDLMESLGVNSYRFSISWARILPKGRF-G-------DVNS--EGINHYNKLIDALLLKGIQPFVTLT 160 (532)
Q Consensus 100 y~eDi~l~k~lG~~~~R~si~W~ri~P~~~~-g-------~~n~--~~l~~y~~~i~~l~~~gi~pivtL~ 160 (532)
..+-++-+|+||++++=++=- ++.+.. | .+|+ -+.+=++++|++|.++||++|+++.
T Consensus 181 I~~kLdYL~~LGv~~I~L~Pi----f~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V 247 (598)
T PRK10785 181 ISEKLPYLKKLGVTALYLNPI----FTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGV 247 (598)
T ss_pred HHHHHHHHHHcCCCEEEeCCc----ccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 456688899999999987632 222100 1 1111 1234579999999999999999775
No 133
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=31.36 E-value=2.7e+02 Score=28.81 Aligned_cols=107 Identities=18% Similarity=0.229 Sum_probs=61.4
Q ss_pred HHHHHHHHHcCC--CeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecCCCC-----cHhHHHh--
Q 009535 101 LEDIDLMESLGV--NSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDS-----PQEIEDK-- 171 (532)
Q Consensus 101 ~eDi~l~k~lG~--~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~-----P~~l~~~-- 171 (532)
.+-++.+++.++ +++=+.+.|.. ..+. =++|.+-.--..++|+.|+++|++.++.+.-+-. |...+..
T Consensus 27 ~~~~~~~~~~~iP~d~i~lD~~~~~--~~~~-f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~~~~~~ 103 (317)
T cd06600 27 VEVVDIMQKEGFPYDVVFLDIHYMD--SYRL-FTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRVDQNYSPFLSGMDK 103 (317)
T ss_pred HHHHHHHHHcCCCcceEEEChhhhC--CCCc-eeechhcCCCHHHHHHHHHHCCCEEEEEeeccccCCCCChHHHHHHHC
Confidence 444555555554 33444444532 1110 0334433333468999999999997776653321 2221110
Q ss_pred ----------------------hCCCCChhhHHHHHHHHHHHHHHhCCCceeEEEecCchhh
Q 009535 172 ----------------------YGAWLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQ 211 (532)
Q Consensus 172 ----------------------~ggw~~~~~~~~f~~ya~~~~~~fgd~v~~w~t~NEp~~~ 211 (532)
+--|+||+.++.|.+..+.+....|- .-+|+=+|||..+
T Consensus 104 ~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~~~gv-dg~w~D~~Ep~~~ 164 (317)
T cd06600 104 GKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWLNSQGV-DGIWLDMNEPSDF 164 (317)
T ss_pred CEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHhhcCCC-ceEEeeCCCCccH
Confidence 01268899999998888776655543 4578889999743
No 134
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=30.61 E-value=1.1e+02 Score=34.28 Aligned_cols=59 Identities=17% Similarity=0.341 Sum_probs=39.7
Q ss_pred hchHHHHHHHHHcCCCeeEeccccceeecCC--CCC-------CCChh--HHHHHHHHHHHHHHcCCccEEEec
Q 009535 98 HRYLEDIDLMESLGVNSYRFSISWARILPKG--RFG-------DVNSE--GINHYNKLIDALLLKGIQPFVTLT 160 (532)
Q Consensus 98 ~ry~eDi~l~k~lG~~~~R~si~W~ri~P~~--~~g-------~~n~~--~l~~y~~~i~~l~~~gi~pivtL~ 160 (532)
.-..+-++-+++||++++=++=-. +.+ .-| .+|+. ..+=++++|+++.++||++|+++.
T Consensus 28 ~gi~~~Ldyl~~LGv~~i~L~Pi~----~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~V 97 (539)
T TIGR02456 28 PGLTSKLDYLKWLGVDALWLLPFF----QSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDLV 97 (539)
T ss_pred HHHHHhHHHHHHCCCCEEEECCCc----CCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 335666889999999998766322 221 001 22221 235589999999999999999764
No 135
>PRK12677 xylose isomerase; Provisional
Probab=30.49 E-value=2.9e+02 Score=29.53 Aligned_cols=90 Identities=21% Similarity=0.198 Sum_probs=53.1
Q ss_pred hHHHHHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccE-EEecCCCCcHhHHHhhCCCCCh
Q 009535 100 YLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPF-VTLTQFDSPQEIEDKYGAWLSP 178 (532)
Q Consensus 100 y~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pi-vtL~H~~~P~~l~~~~ggw~~~ 178 (532)
.+|-++.++++|++.+=+.. ..+.|-.. . ..+--+..+++-+.+.+.||++. ++...|..|.+ +.|++.++
T Consensus 33 ~~E~v~~~a~~Gf~gVElh~--~~l~p~~~--~-~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~---~~g~lts~ 104 (384)
T PRK12677 33 PVEAVHKLAELGAYGVTFHD--DDLVPFGA--T-DAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVF---KDGAFTSN 104 (384)
T ss_pred HHHHHHHHHHhCCCEEEecc--cccCCCCC--C-hhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccc---cCCcCCCC
Confidence 68999999999999886632 22334321 1 11111346788888999999965 55555655644 23788884
Q ss_pred --hhHHHHHHHHHHHH---HHhCC
Q 009535 179 --ESQEDFGYFADICF---KSFGD 197 (532)
Q Consensus 179 --~~~~~f~~ya~~~~---~~fgd 197 (532)
...+.-.++.+.++ ..+|-
T Consensus 105 d~~~R~~Ai~~~~r~IdlA~eLGa 128 (384)
T PRK12677 105 DRDVRRYALRKVLRNIDLAAELGA 128 (384)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCC
Confidence 22233244444433 44554
No 136
>PLN02389 biotin synthase
Probab=30.35 E-value=1.2e+02 Score=32.40 Aligned_cols=58 Identities=14% Similarity=0.143 Sum_probs=42.4
Q ss_pred chHHHHHHHHHcCCCeeEeccccce-eecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEec
Q 009535 99 RYLEDIDLMESLGVNSYRFSISWAR-ILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLT 160 (532)
Q Consensus 99 ry~eDi~l~k~lG~~~~R~si~W~r-i~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~ 160 (532)
.-+|.++.||++|++.|-.+++=++ ++|.-. ..-+ .+..-+.++.+++.||++..++.
T Consensus 176 l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~-~~~s---~e~rl~ti~~a~~~Gi~v~sg~I 234 (379)
T PLN02389 176 LEKEQAAQLKEAGLTAYNHNLDTSREYYPNVI-TTRS---YDDRLETLEAVREAGISVCSGGI 234 (379)
T ss_pred CCHHHHHHHHHcCCCEEEeeecCChHHhCCcC-CCCC---HHHHHHHHHHHHHcCCeEeEEEE
Confidence 5689999999999999999886222 444421 1223 36678999999999998766653
No 137
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=30.35 E-value=78 Score=32.31 Aligned_cols=62 Identities=16% Similarity=0.297 Sum_probs=45.1
Q ss_pred hHHHHHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecCCCCcHhHHHhhC
Q 009535 100 YLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYG 173 (532)
Q Consensus 100 y~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~P~~l~~~~g 173 (532)
.++=+++++++|+..+.+..= +.=+++.+++|+++++.+.+++| +|.+|--..|.=++..|.
T Consensus 108 ~~~~f~~~~~~Gv~GvKidF~----------~~d~Q~~v~~y~~i~~~AA~~~L--mvnfHg~~kPtG~~RTyP 169 (273)
T PF10566_consen 108 LDEAFKLYAKWGVKGVKIDFM----------DRDDQEMVNWYEDILEDAAEYKL--MVNFHGATKPTGLRRTYP 169 (273)
T ss_dssp HHHHHHHHHHCTEEEEEEE------------SSTSHHHHHHHHHHHHHHHHTT---EEEETTS---TTHHHCST
T ss_pred HHHHHHHHHHcCCCEEeeCcC----------CCCCHHHHHHHHHHHHHHHHcCc--EEEecCCcCCCcccccCc
Confidence 366789999999999987651 33468999999999999999998 788886667765654433
No 138
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=29.80 E-value=84 Score=37.05 Aligned_cols=56 Identities=23% Similarity=0.306 Sum_probs=41.3
Q ss_pred hchHHHHHHHHHcCCCeeEeccccc---------------eeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEec
Q 009535 98 HRYLEDIDLMESLGVNSYRFSISWA---------------RILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLT 160 (532)
Q Consensus 98 ~ry~eDi~l~k~lG~~~~R~si~W~---------------ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~ 160 (532)
....+-++-+++||++++=+|=-+. +|.|.= | +.+=+++++++++++||.+|+++.
T Consensus 16 ~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~l--G-----t~edf~~Lv~aah~~Gm~vIlDiV 86 (825)
T TIGR02401 16 DDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPEL--G-----GEEGLRRLSEAARARGLGLIVDIV 86 (825)
T ss_pred HHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCC--C-----CHHHHHHHHHHHHHCCCEEEEEec
Confidence 3467888999999999997665432 222221 2 345579999999999999999764
No 139
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=29.73 E-value=2.8e+02 Score=29.46 Aligned_cols=74 Identities=16% Similarity=0.166 Sum_probs=56.5
Q ss_pred HHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecCCCCcHhHHHhhCCCCChhhHHHHHH
Q 009535 107 MESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGY 186 (532)
Q Consensus 107 ~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ 186 (532)
..+.|++.+|+. + |.+.. --+..+++++.++++|+..=+..+|-.++..+.++||+-+...+++.-.+
T Consensus 97 a~~~G~~~iRIN---------P--GNig~-~~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~ 164 (360)
T PRK00366 97 AAEAGADALRIN---------P--GNIGK-RDERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALR 164 (360)
T ss_pred HHHhCCCEEEEC---------C--CCCCc-hHHHHHHHHHHHHHCCCCEEEecCCccChHHHHHHcCCCCHHHHHHHHHH
Confidence 346799999652 3 55521 01567999999999999999999999999999999876555667777777
Q ss_pred HHHHHH
Q 009535 187 FADICF 192 (532)
Q Consensus 187 ya~~~~ 192 (532)
+++.+-
T Consensus 165 ~~~~le 170 (360)
T PRK00366 165 HAKILE 170 (360)
T ss_pred HHHHHH
Confidence 777643
No 140
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=29.68 E-value=1.6e+02 Score=30.38 Aligned_cols=64 Identities=17% Similarity=0.181 Sum_probs=46.2
Q ss_pred chHHHHHHHHHcCCCeeEeccc----cceeecCC--CCCCCChhHHHHHHHHHHHHHHcCCccEEEecCCCCcHhHH
Q 009535 99 RYLEDIDLMESLGVNSYRFSIS----WARILPKG--RFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIE 169 (532)
Q Consensus 99 ry~eDi~l~k~lG~~~~R~si~----W~ri~P~~--~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~P~~l~ 169 (532)
-.++-|++|+.+|+|.+-+=++ +.. .|.- ..|.+.++. ++++++.++++||++|-.+ |+|..+.
T Consensus 18 ~lk~~id~ma~~k~N~l~lhl~D~f~~~~-~p~~~~~~~~yT~~e---i~ei~~yA~~~gI~vIPei---d~pGH~~ 87 (301)
T cd06565 18 YLKKLLRLLALLGANGLLLYYEDTFPYEG-EPEVGRMRGAYTKEE---IREIDDYAAELGIEVIPLI---QTLGHLE 87 (301)
T ss_pred HHHHHHHHHHHcCCCEEEEEEecceecCC-CcccccCCCCcCHHH---HHHHHHHHHHcCCEEEecC---CCHHHHH
Confidence 3678899999999999987543 221 1221 026777755 4899999999999988877 6776554
No 141
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=29.40 E-value=3.5e+02 Score=27.75 Aligned_cols=72 Identities=17% Similarity=0.097 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHcCCccEEEecCCCCcHhHHHhhCCCCChhhHHHHHHHHHHHHHHhCCCceeEEEecCchhhhhccccc
Q 009535 139 NHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQVTLSYRL 218 (532)
Q Consensus 139 ~~y~~~i~~l~~~gi~pivtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~fgd~v~~w~t~NEp~~~~~~gy~~ 218 (532)
+-+.+.++.++++||++.+++. +++|. +..+.+.+=++.+.+-=-+.|+.....-+|+.....-|..
T Consensus 163 ~~~~~ai~~l~~~gi~v~~~lI-~GlPg------------et~e~~~~t~~~l~~l~~d~i~i~~l~~~pgT~L~~~~~~ 229 (302)
T TIGR01212 163 ACYVDAVKRARKRGIKVCSHVI-LGLPG------------EDREEMMETAKIVSLLDVDGIKIHPLHVVKGTKMAKMYEK 229 (302)
T ss_pred HHHHHHHHHHHHcCCEEEEeEE-ECCCC------------CCHHHHHHHHHHHHhcCCCEEEEEEEEecCCCHHHHHHHc
Confidence 4567899999999999777654 45552 2346666666666554446788888888888766555666
Q ss_pred CCCCC
Q 009535 219 GCHPP 223 (532)
Q Consensus 219 g~~~P 223 (532)
|.+.|
T Consensus 230 g~~~~ 234 (302)
T TIGR01212 230 GELKT 234 (302)
T ss_pred CCCCC
Confidence 66654
No 142
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=29.33 E-value=1.5e+02 Score=29.49 Aligned_cols=74 Identities=14% Similarity=0.153 Sum_probs=44.6
Q ss_pred eccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecCCCCcHhHHHhhCCCCChhhHHHHHHHHHHHHHHhC
Q 009535 117 FSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSFG 196 (532)
Q Consensus 117 ~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~fg 196 (532)
+.+.|..+.++|. -.... .......+++.++++|+++++++..++...... -..++..++.|++=+-..+++|+
T Consensus 26 v~~~f~~i~~~G~-l~~~~-~~~~~~~~~~~~~~~~~kvl~sigg~~~~~~~~----~~~~~~~r~~fi~~lv~~~~~~~ 99 (253)
T cd06545 26 INLAFANPDANGT-LNANP-VRSELNSVVNAAHAHNVKILISLAGGSPPEFTA----ALNDPAKRKALVDKIINYVVSYN 99 (253)
T ss_pred EEEEEEEECCCCe-EEecC-cHHHHHHHHHHHHhCCCEEEEEEcCCCCCcchh----hhcCHHHHHHHHHHHHHHHHHhC
Confidence 3445666655542 11110 113467889999999999999997765543221 23466677777666555566653
No 143
>PLN02960 alpha-amylase
Probab=29.28 E-value=89 Score=37.05 Aligned_cols=95 Identities=9% Similarity=0.113 Sum_probs=58.0
Q ss_pred hhhhchHHH-HHHHHHcCCCeeEeccc--------c-------ceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEE
Q 009535 95 DHYHRYLED-IDLMESLGVNSYRFSIS--------W-------ARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVT 158 (532)
Q Consensus 95 d~y~ry~eD-i~l~k~lG~~~~R~si~--------W-------~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivt 158 (532)
.-|.-..+. |+-+|+||++++-+.=- | -.+.|.- |+ .+=++.+|++|.++||.+|+.
T Consensus 413 gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~y--Gt-----p~dfk~LVd~aH~~GI~VILD 485 (897)
T PLN02960 413 SSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRF--GT-----PDDFKRLVDEAHGLGLLVFLD 485 (897)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCccccc--CC-----HHHHHHHHHHHHHCCCEEEEE
Confidence 355555544 89999999999876421 1 1111111 22 244789999999999999998
Q ss_pred ec--CCCC--c--HhHHHh-------------hCC-------CCChhhHHHHHHHHHHHHHHhC
Q 009535 159 LT--QFDS--P--QEIEDK-------------YGA-------WLSPESQEDFGYFADICFKSFG 196 (532)
Q Consensus 159 L~--H~~~--P--~~l~~~-------------~gg-------w~~~~~~~~f~~ya~~~~~~fg 196 (532)
+. |+.- + .+..+. +.. ..++++.+.+.+=++.-++.|+
T Consensus 486 vV~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~Eyh 549 (897)
T PLN02960 486 IVHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYR 549 (897)
T ss_pred ecccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHHC
Confidence 74 4321 1 111100 001 2346777888888888888774
No 144
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=28.89 E-value=2.7e+02 Score=25.51 Aligned_cols=56 Identities=16% Similarity=0.158 Sum_probs=38.0
Q ss_pred hHHHHHHHHHcCCCeeEeccc-cceeecC-CCCCCCChhHHHHHHHHHHHHHHcC-CccEEEe
Q 009535 100 YLEDIDLMESLGVNSYRFSIS-WARILPK-GRFGDVNSEGINHYNKLIDALLLKG-IQPFVTL 159 (532)
Q Consensus 100 y~eDi~l~k~lG~~~~R~si~-W~ri~P~-~~~g~~n~~~l~~y~~~i~~l~~~g-i~pivtL 159 (532)
-++.++.|+++|++.+.+|++ ++.-.-+ -. ...+ .+.+.+.|+.+++.| +.+.+.+
T Consensus 99 ~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~-~~~~---~~~~~~~i~~~~~~g~~~v~~~~ 157 (216)
T smart00729 99 TEELLEALKEAGVNRVSLGVQSGSDEVLKAIN-RGHT---VEDVLEAVEKLREAGPIKVSTDL 157 (216)
T ss_pred CHHHHHHHHHcCCCeEEEecccCCHHHHHHhc-CCCC---HHHHHHHHHHHHHhCCcceEEeE
Confidence 378899999999999999995 5432111 10 1122 367789999999999 6544433
No 145
>PRK09389 (R)-citramalate synthase; Provisional
Probab=28.74 E-value=1.4e+02 Score=33.13 Aligned_cols=61 Identities=11% Similarity=0.048 Sum_probs=48.1
Q ss_pred hHHHHHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEec
Q 009535 100 YLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLT 160 (532)
Q Consensus 100 y~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~ 160 (532)
-++|++.+.+.|++.+++.++-|.+.-....+.--++.++...+.|..+++.|+++.+++-
T Consensus 75 ~~~di~~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~e 135 (488)
T PRK09389 75 VKVDIDAALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGE 135 (488)
T ss_pred CHHHHHHHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEe
Confidence 3899999999999999999977666433222333456788889999999999999888775
No 146
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=28.61 E-value=2.5e+02 Score=29.68 Aligned_cols=94 Identities=13% Similarity=0.111 Sum_probs=58.7
Q ss_pred HHHHHHHHHcCCCeeEeccccceeecCC--CCCC-CChhHHHHHHHHHHHHHHcCCcc-EEEecCCCCcHhHHHhhCCCC
Q 009535 101 LEDIDLMESLGVNSYRFSISWARILPKG--RFGD-VNSEGINHYNKLIDALLLKGIQP-FVTLTQFDSPQEIEDKYGAWL 176 (532)
Q Consensus 101 ~eDi~l~k~lG~~~~R~si~W~ri~P~~--~~g~-~n~~~l~~y~~~i~~l~~~gi~p-ivtL~H~~~P~~l~~~~ggw~ 176 (532)
++.++.|+++|+|.+.+++ .-+-++- ..|. .+. +-..+.|+.+++.|+.. -++|. +++|.
T Consensus 103 ~~~l~~l~~~G~nrislGv--QS~~~~~L~~l~R~~~~---~~~~~ai~~~~~~g~~~v~~Dli-~GlPg---------- 166 (370)
T PRK06294 103 ESYIRALALTGINRISIGV--QTFDDPLLKLLGRTHSS---SKAIDAVQECSEHGFSNLSIDLI-YGLPT---------- 166 (370)
T ss_pred HHHHHHHHHCCCCEEEEcc--ccCCHHHHHHcCCCCCH---HHHHHHHHHHHHcCCCeEEEEee-cCCCC----------
Confidence 6889999999999666655 2221211 0021 222 33567888999999974 45553 56663
Q ss_pred ChhhHHHHHHHHHHHHHHhCCCceeEEEecCchhhh
Q 009535 177 SPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQV 212 (532)
Q Consensus 177 ~~~~~~~f~~ya~~~~~~fgd~v~~w~t~NEp~~~~ 212 (532)
++.+.|.+-.+.+.+-=-+.|..+...-||....
T Consensus 167 --qt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~l 200 (370)
T PRK06294 167 --QSLSDFIVDLHQAITLPITHISLYNLTIDPHTSF 200 (370)
T ss_pred --CCHHHHHHHHHHHHccCCCeEEEeeeEecCCChH
Confidence 2456666666666654346788888778887543
No 147
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=28.09 E-value=80 Score=39.06 Aligned_cols=66 Identities=18% Similarity=0.313 Sum_probs=40.7
Q ss_pred hhhhchH--HHHHHHHHcCCCeeEeccccceee-----cCCCC---C-------CCCh----hHHHHHHHHHHHHHHcCC
Q 009535 95 DHYHRYL--EDIDLMESLGVNSYRFSISWARIL-----PKGRF---G-------DVNS----EGINHYNKLIDALLLKGI 153 (532)
Q Consensus 95 d~y~ry~--eDi~l~k~lG~~~~R~si~W~ri~-----P~~~~---g-------~~n~----~~l~~y~~~i~~l~~~gi 153 (532)
.-|.... +.|+-+|+||++++=+.=--.... +.+.. | .+|. ..++=++++|++|.++||
T Consensus 182 Gt~~~l~~~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI 261 (1221)
T PRK14510 182 GTFAKLAAPEAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGI 261 (1221)
T ss_pred cHHhhcCCchhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCC
Confidence 3344444 668899999999997643221110 00000 0 1111 145668999999999999
Q ss_pred ccEEEec
Q 009535 154 QPFVTLT 160 (532)
Q Consensus 154 ~pivtL~ 160 (532)
++|+.+.
T Consensus 262 ~VILDvV 268 (1221)
T PRK14510 262 AVILDVV 268 (1221)
T ss_pred EEEEEEc
Confidence 9999754
No 148
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=27.77 E-value=1.2e+02 Score=29.52 Aligned_cols=77 Identities=10% Similarity=0.134 Sum_probs=52.6
Q ss_pred HHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecCCCCcHhHHHhhCCCCChhhHHH
Q 009535 104 IDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQED 183 (532)
Q Consensus 104 i~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~P~~l~~~~ggw~~~~~~~~ 183 (532)
++.+++.|++.+|+.++=+........+.--++.++...++++.+++.|+++.+++-+.+ +...+.
T Consensus 73 ~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~--------------~~~~~~ 138 (237)
T PF00682_consen 73 VEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDAS--------------RTDPEE 138 (237)
T ss_dssp HHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTG--------------GSSHHH
T ss_pred HHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccc--------------cccHHH
Confidence 334567999999999865553333211333456778889999999999999987775422 223566
Q ss_pred HHHHHHHHHHH
Q 009535 184 FGYFADICFKS 194 (532)
Q Consensus 184 f~~ya~~~~~~ 194 (532)
+.++++.+.+.
T Consensus 139 ~~~~~~~~~~~ 149 (237)
T PF00682_consen 139 LLELAEALAEA 149 (237)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 77777777665
No 149
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=27.44 E-value=1.6e+02 Score=29.04 Aligned_cols=55 Identities=13% Similarity=0.162 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCCCcHhHHHhhCCCCChhhHHHHHHHHHHHHHHhC
Q 009535 138 INHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSFG 196 (532)
Q Consensus 138 l~~y~~~i~~l~~~gi~pivtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~fg 196 (532)
.+...+.|..|+++|+++++++.-+.....+ ....+++.++.|++-+..++++||
T Consensus 50 ~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~----~~~~~~~~~~~fa~~l~~~v~~yg 104 (255)
T cd06542 50 LTNKETYIRPLQAKGTKVLLSILGNHLGAGF----ANNLSDAAAKAYAKAIVDTVDKYG 104 (255)
T ss_pred hHHHHHHHHHHhhCCCEEEEEECCCCCCCCc----cccCCHHHHHHHHHHHHHHHHHhC
Confidence 4566889999999999999999765543211 012445556666666555666664
No 150
>PF03511 Fanconi_A: Fanconi anaemia group A protein; InterPro: IPR003516 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy []. Four complementation groups have been identified, designated A to D. The FA group A gene (FAA) has been cloned [], but its function remains to be elucidated.
Probab=27.33 E-value=40 Score=26.35 Aligned_cols=37 Identities=19% Similarity=0.355 Sum_probs=30.5
Q ss_pred ceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecC
Q 009535 122 ARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQ 161 (532)
Q Consensus 122 ~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H 161 (532)
+++.|.. |.=-+++++..-+++..|.++|| +.+.|++
T Consensus 19 s~l~p~~--~~d~~kaldiCaeIL~cLE~R~i-sWl~LFq 55 (64)
T PF03511_consen 19 SYLAPKE--GADSLKALDICAEILGCLEKRKI-SWLVLFQ 55 (64)
T ss_pred HhcCccc--ccccHHHHHHHHHHHHHHHhCCC-cHHHhhh
Confidence 5677886 55567899999999999999999 7777765
No 151
>PHA02152 hypothetical protein
Probab=27.21 E-value=38 Score=27.87 Aligned_cols=36 Identities=33% Similarity=0.648 Sum_probs=25.0
Q ss_pred ccCC-cCCCCCccccccccccCCCCccCCCCCCccchhhhchHHHHHHHHHc
Q 009535 60 VEGA-YVSEGKGLSNWDVFTHTPGNIDDGSSGDVAVDHYHRYLEDIDLMESL 110 (532)
Q Consensus 60 ~EG~-~~~~g~~~s~wd~~~~~~~~~~~~~~~~~a~d~y~ry~eDi~l~k~l 110 (532)
|||+ |.+.|+...-|..|.. .+++ -|+||.+.||.+
T Consensus 42 v~g~~~g~~~~~~~ew~~fis-sgr~--------------~~~~dy~km~~i 78 (96)
T PHA02152 42 VNGARFGEENKPVAEWFYFIS-SGRV--------------YFKEDYDKMATI 78 (96)
T ss_pred hcccchhhcCCchhhhhhhhh-cchh--------------hHHhhHHHHHHH
Confidence 5776 5577888888888776 4443 367787777754
No 152
>cd06419 GH25_muramidase_2 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=27.08 E-value=1.8e+02 Score=27.92 Aligned_cols=26 Identities=12% Similarity=0.198 Sum_probs=17.4
Q ss_pred hhhHHHHHHHHHHHHHHhCCCceeEE
Q 009535 178 PESQEDFGYFADICFKSFGDRVKYWF 203 (532)
Q Consensus 178 ~~~~~~f~~ya~~~~~~fgd~v~~w~ 203 (532)
.+..+...+|++.|-++.|.++-.++
T Consensus 109 ~~~~~~~~~fl~~ve~~~g~~piIYt 134 (190)
T cd06419 109 KKSTQKLGLLVQLLEQHYNQSVIIRG 134 (190)
T ss_pred HHHHHHHHHHHHHHHHHHCCCeEEEe
Confidence 45557777777777777777655444
No 153
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=27.03 E-value=4.7e+02 Score=25.99 Aligned_cols=53 Identities=17% Similarity=0.198 Sum_probs=35.5
Q ss_pred chHHHHHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccE
Q 009535 99 RYLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPF 156 (532)
Q Consensus 99 ry~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pi 156 (532)
-+++-+++++++|++.+=+++.=....+.. ..++. ...+.+-+.+.++||++.
T Consensus 22 ~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~--~~~~~---~~~~~l~~~l~~~gl~i~ 74 (283)
T PRK13209 22 CWLEKLAIAKTAGFDFVEMSVDESDERLAR--LDWSR---EQRLALVNALVETGFRVN 74 (283)
T ss_pred CHHHHHHHHHHcCCCeEEEecCccccchhc--cCCCH---HHHHHHHHHHHHcCCcee
Confidence 378999999999999998865311111111 12334 345788888999999864
No 154
>PRK01060 endonuclease IV; Provisional
Probab=26.34 E-value=2.4e+02 Score=28.11 Aligned_cols=51 Identities=12% Similarity=0.104 Sum_probs=37.4
Q ss_pred hHHHHHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccE
Q 009535 100 YLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPF 156 (532)
Q Consensus 100 y~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pi 156 (532)
+++-++.++++|++.+-+.+.-++.... +.++.+. .+++-+.+.++||+..
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~~---~~~~~~~---~~~lk~~~~~~gl~~~ 64 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWKR---KPLEELN---IEAFKAACEKYGISPE 64 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCcC---CCCCHHH---HHHHHHHHHHcCCCCC
Confidence 7888999999999999998876554332 3455533 4566677889999853
No 155
>TIGR02629 L_rham_iso_rhiz L-rhamnose catabolism isomerase, Pseudomonas stutzeri subtype. Members of this family are isomerases in the pathway of L-rhamnose catabolism as found in Pseudomonas stutzeri and in a number of the Rhizobiales. This family differs from the L-rhamnose isomerases of Escherichia coli (see TIGR01748). This enzyme catalyzes the isomerization step in rhamnose catabolism. Genetic evidence in Rhizobium leguminosarum bv. trifolii suggests phosphorylation occurs first, then isomerization of the the phosphorylated sugar, but characterization of the recombinant enzyme from Pseudomonas stutzeri does show L-rhamnose isomerase activity. The name given is deliberately vague because the relative order of phosphorylation and isomerization is unclear.
Probab=25.44 E-value=2.3e+02 Score=30.71 Aligned_cols=88 Identities=16% Similarity=0.312 Sum_probs=57.6
Q ss_pred HHHHHHHHHcCCCeeEecc--ccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccE-EEecCCCCcHh--HHHhhCCC
Q 009535 101 LEDIDLMESLGVNSYRFSI--SWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPF-VTLTQFDSPQE--IEDKYGAW 175 (532)
Q Consensus 101 ~eDi~l~k~lG~~~~R~si--~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pi-vtL~H~~~P~~--l~~~~ggw 175 (532)
.+|+..+.+|.--..|+++ .|. .+|.+.|+ +.++++||..- +...-|..|+. -.-++|..
T Consensus 73 i~D~~~v~~Lt~~~~~v~LH~~wd---------~vD~~elk------~~A~e~GL~lda~Npn~Fs~~~~q~~~yk~GSL 137 (412)
T TIGR02629 73 LEDCAVIQQLTRATPNVSLHIPWD---------KADPKELK------ARGSALGLGFDAMNSNTFSDAPGQAHSYKFGSL 137 (412)
T ss_pred HHHHHHHHhhcCCCCCccccCCCC---------cCCHHHHH------HHHHHcCCccceeccccccCccccccccccccc
Confidence 6888888888877777766 672 23655554 88999999987 76666766732 12245778
Q ss_pred CCh--hhHHHHHHHHHHHH---HHhCCC-ceeEE
Q 009535 176 LSP--ESQEDFGYFADICF---KSFGDR-VKYWF 203 (532)
Q Consensus 176 ~~~--~~~~~f~~ya~~~~---~~fgd~-v~~w~ 203 (532)
+|| .+.+...+-+..|. +..|.. |+.|+
T Consensus 138 tnPD~~VR~~AIeh~~~~i~Ig~elGs~~v~IW~ 171 (412)
T TIGR02629 138 SHTDAATRRQAVEHNLECIEIGKALGSKALTVWI 171 (412)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhCCCeeEEEC
Confidence 774 56666677666665 455553 34443
No 156
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=25.33 E-value=2.5e+02 Score=28.51 Aligned_cols=70 Identities=14% Similarity=0.102 Sum_probs=50.0
Q ss_pred cchhhhchHHHHHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecCCCCcH
Q 009535 93 AVDHYHRYLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQ 166 (532)
Q Consensus 93 a~d~y~ry~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~P~ 166 (532)
+++..+...+-.+.+|++|+..+|-+..=+|--|..-.| +-+ +.+..+-+.+.+.||..+.+.++-..+.
T Consensus 36 sie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G-~g~---~gl~~l~~~~~~~Gl~~~te~~d~~~~~ 105 (266)
T PRK13398 36 AVESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQG-LGE---EGLKILKEVGDKYNLPVVTEVMDTRDVE 105 (266)
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCC-cHH---HHHHHHHHHHHHcCCCEEEeeCChhhHH
Confidence 345566777888999999999999998667776654322 224 5556677778999999888887544433
No 157
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=24.67 E-value=5.3e+02 Score=26.56 Aligned_cols=109 Identities=19% Similarity=0.187 Sum_probs=62.5
Q ss_pred hHHHHHHHHHcCCCe--eEeccccceeecCCCCC--CCChhHHHHHHHHHHHHHHcCCccEEEecCCCC---cHhHHHhh
Q 009535 100 YLEDIDLMESLGVNS--YRFSISWARILPKGRFG--DVNSEGINHYNKLIDALLLKGIQPFVTLTQFDS---PQEIEDKY 172 (532)
Q Consensus 100 y~eDi~l~k~lG~~~--~R~si~W~ri~P~~~~g--~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~---P~~l~~~~ 172 (532)
..+-++.+++.|+.. +=+.+.|........ . ++|.+..---.++|+.|+++|++.++.++-+-. |..-+-+.
T Consensus 31 v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~-~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~~~~~~y~e~~~ 109 (317)
T cd06599 31 LLEFIDKCREHDIPCDSFHLSSGYTSIEGGKR-YVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLLQDHPRYKELKE 109 (317)
T ss_pred HHHHHHHHHHcCCCeeEEEEeccccccCCCce-eeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCcccCCCHHHHHHHH
Confidence 455566777777644 333334543310000 1 233322222479999999999999887764432 32211110
Q ss_pred ---------C----------C------CCChhhHHHHHHHHHHHHHHhCCCceeEEEecCchh
Q 009535 173 ---------G----------A------WLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNM 210 (532)
Q Consensus 173 ---------g----------g------w~~~~~~~~f~~ya~~~~~~fgd~v~~w~t~NEp~~ 210 (532)
| | ++||+..+.|.+..+......|- .-+|+=+|||.+
T Consensus 110 ~g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gv-dg~w~D~~E~~~ 171 (317)
T cd06599 110 AGAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEALLDLGI-DSTWNDNNEYEI 171 (317)
T ss_pred CCcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHHhcCCC-cEEEecCCCCcc
Confidence 0 0 47888888888777655555433 467888999963
No 158
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=24.65 E-value=1.4e+02 Score=30.61 Aligned_cols=84 Identities=14% Similarity=0.238 Sum_probs=55.5
Q ss_pred HHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecCCCC----cHhHHHhhCCCCChh
Q 009535 104 IDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDS----PQEIEDKYGAWLSPE 179 (532)
Q Consensus 104 i~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~----P~~l~~~~ggw~~~~ 179 (532)
.+.+++-+-+---++..|-.|-|++ .+.. ....++++.++++|+++++++..++- +.-+. .-..++.
T Consensus 16 ~~~~~~~~~~lt~v~p~w~~~~~~g---~~~~---~~~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~---~~l~~~~ 86 (313)
T cd02874 16 YESLRANAPYLTYIAPFWYGVDADG---TLTG---LPDERLIEAAKRRGVKPLLVITNLTNGNFDSELAH---AVLSNPE 86 (313)
T ss_pred HHHHHHhcCCCCEEEEEEEEEcCCC---CCCC---CCCHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHH---HHhcCHH
Confidence 5666776666777888999998765 3332 22368999999999999999976641 11111 1234566
Q ss_pred hHHHHHHHHHHHHHHhC
Q 009535 180 SQEDFGYFADICFKSFG 196 (532)
Q Consensus 180 ~~~~f~~ya~~~~~~fg 196 (532)
.++.|++=+-.+++++|
T Consensus 87 ~r~~fi~~iv~~l~~~~ 103 (313)
T cd02874 87 ARQRLINNILALAKKYG 103 (313)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 67777666666666663
No 159
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=24.57 E-value=1.8e+02 Score=30.90 Aligned_cols=82 Identities=20% Similarity=0.267 Sum_probs=56.5
Q ss_pred ccchhhhchHHHHHHHHHcCCCeeEeccccceeecCCCCCCC---------C-hhHHHHHHHHHHHHHHcCCccEEEecC
Q 009535 92 VAVDHYHRYLEDIDLMESLGVNSYRFSISWARILPKGRFGDV---------N-SEGINHYNKLIDALLLKGIQPFVTLTQ 161 (532)
Q Consensus 92 ~a~d~y~ry~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~---------n-~~~l~~y~~~i~~l~~~gi~pivtL~H 161 (532)
+|.=||+ |+-=+..++. ++.+|+. + |.+ + . +...++++.++++|+..=+..+|
T Consensus 78 VADIHFd-~~lAl~a~~~--v~kiRIN---------P--GNi~~~~~~~~g~~~---~~~~~vv~~ake~~ipIRIGvN~ 140 (359)
T PF04551_consen 78 VADIHFD-YRLALEAIEA--VDKIRIN---------P--GNIVDEFQEELGSIR---EKVKEVVEAAKERGIPIRIGVNS 140 (359)
T ss_dssp EEEESTT-CHHHHHHHHC---SEEEE----------T--TTSS----SS-SS-H---HHHHHHHHHHHHHT-EEEEEEEG
T ss_pred eeecCCC-HHHHHHHHHH--hCeEEEC---------C--CcccccccccccchH---HHHHHHHHHHHHCCCCEEEeccc
Confidence 4444555 5555555555 8888863 3 655 2 3 66799999999999999999999
Q ss_pred CCCcHhHHHhhCCCCChhhHHHHHHHHHHH
Q 009535 162 FDSPQEIEDKYGAWLSPESQEDFGYFADIC 191 (532)
Q Consensus 162 ~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~ 191 (532)
-.++..+.++| |-+...+++.-.++++.+
T Consensus 141 GSL~~~~~~ky-~~t~~amvesA~~~~~~l 169 (359)
T PF04551_consen 141 GSLEKDILEKY-GPTPEAMVESALEHVRIL 169 (359)
T ss_dssp GGS-HHHHHHH-CHHHHHHHHHHHHHHHHH
T ss_pred ccCcHHHHhhc-cchHHHHHHHHHHHHHHH
Confidence 99999999888 444456666666777643
No 160
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=24.43 E-value=3.6e+02 Score=28.21 Aligned_cols=60 Identities=12% Similarity=0.243 Sum_probs=49.6
Q ss_pred HHHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecCCCCcH
Q 009535 103 DIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQ 166 (532)
Q Consensus 103 Di~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~P~ 166 (532)
+.+.+|++|.++..|=+=|. |+++ -.+|..-.++.+++.++|++.||-=++-+.-+|.+.
T Consensus 111 s~~rike~GadavK~Llyy~---pD~~-~ein~~k~a~vervg~ec~a~dipf~lE~ltYd~~~ 170 (325)
T TIGR01232 111 SAKRLKEQGANAVKFLLYYD---VDDA-EEINIQKKAYIERIGSECVAEDIPFFLEVLTYDDNI 170 (325)
T ss_pred cHHHHHHhCCCeEEEEEEeC---CCCC-hHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCCC
Confidence 46889999999999988774 4432 467888889999999999999999888888776543
No 161
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=24.17 E-value=1e+02 Score=30.67 Aligned_cols=62 Identities=10% Similarity=0.049 Sum_probs=40.8
Q ss_pred chhhhchHHHHHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEE
Q 009535 94 VDHYHRYLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFV 157 (532)
Q Consensus 94 ~d~y~ry~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~piv 157 (532)
.....+++.-|++++.+|.+++++........+.. ...-+..++.++++.+.+.++||+..+
T Consensus 86 ~~~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~--~~~~~~~~~~l~~l~~~a~~~gv~l~i 147 (275)
T PRK09856 86 RESLDMIKLAMDMAKEMNAGYTLISAAHAGYLTPP--NVIWGRLAENLSELCEYAENIGMDLIL 147 (275)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCH--HHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 34567788889999999999999864321111111 111134456788889999999996544
No 162
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=24.12 E-value=69 Score=29.85 Aligned_cols=63 Identities=13% Similarity=0.069 Sum_probs=41.0
Q ss_pred hhhhchHHHHHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEE
Q 009535 95 DHYHRYLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFV 157 (532)
Q Consensus 95 d~y~ry~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~piv 157 (532)
......++-+++++.+|++.+++...+-...+......--...++.++++++.+.++|+++.+
T Consensus 68 ~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~l 130 (213)
T PF01261_consen 68 EALEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIAL 130 (213)
T ss_dssp HHHHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEE
Confidence 345678899999999999999999764111111100011112456778888888999987555
No 163
>PRK05660 HemN family oxidoreductase; Provisional
Probab=24.05 E-value=2.9e+02 Score=29.36 Aligned_cols=93 Identities=14% Similarity=0.124 Sum_probs=57.0
Q ss_pred HHHHHHHHHcCCCeeEeccc-cc-eeecCCCCCCCChhHHHHHHHHHHHHHHcCCccE-EEecCCCCcHhHHHhhCCCCC
Q 009535 101 LEDIDLMESLGVNSYRFSIS-WA-RILPKGRFGDVNSEGINHYNKLIDALLLKGIQPF-VTLTQFDSPQEIEDKYGAWLS 177 (532)
Q Consensus 101 ~eDi~l~k~lG~~~~R~si~-W~-ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pi-vtL~H~~~P~~l~~~~ggw~~ 177 (532)
++.++.|+++|++.+-+||. =+ .+...=. ..-+. +-..+.|+.+++.|+.++ ++| =+++|.
T Consensus 107 ~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~-r~~~~---~~~~~ai~~~~~~G~~~v~~dl-i~Glpg----------- 170 (378)
T PRK05660 107 ADRFVGYQRAGVNRISIGVQSFSEEKLKRLG-RIHGP---DEAKRAAKLAQGLGLRSFNLDL-MHGLPD----------- 170 (378)
T ss_pred HHHHHHHHHcCCCEEEeccCcCCHHHHHHhC-CCCCH---HHHHHHHHHHHHcCCCeEEEEe-ecCCCC-----------
Confidence 58999999999997777772 22 2222210 12222 344678999999999875 555 356663
Q ss_pred hhhHHHHHHHHHHHHHHhCCCceeEEEecCchh
Q 009535 178 PESQEDFGYFADICFKSFGDRVKYWFTINEPNM 210 (532)
Q Consensus 178 ~~~~~~f~~ya~~~~~~fgd~v~~w~t~NEp~~ 210 (532)
++.+.+.+-.+.+.+-=-+.+..+...=||..
T Consensus 171 -qt~~~~~~~l~~~~~l~p~~is~y~l~~~~gT 202 (378)
T PRK05660 171 -QSLEEALDDLRQAIALNPPHLSWYQLTIEPNT 202 (378)
T ss_pred -CCHHHHHHHHHHHHhcCCCeEEeeccEeccCC
Confidence 23555666566655543456666665566653
No 164
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=23.61 E-value=87 Score=36.13 Aligned_cols=65 Identities=26% Similarity=0.557 Sum_probs=44.1
Q ss_pred hhchHHH-HHHHHHcCCCeeEec-c--------ccce-----eecCCCCCCCC-hhHHHHHHHHHHHHHHcCCccEEEec
Q 009535 97 YHRYLED-IDLMESLGVNSYRFS-I--------SWAR-----ILPKGRFGDVN-SEGINHYNKLIDALLLKGIQPFVTLT 160 (532)
Q Consensus 97 y~ry~eD-i~l~k~lG~~~~R~s-i--------~W~r-----i~P~~~~g~~n-~~~l~~y~~~i~~l~~~gi~pivtL~ 160 (532)
|.-+.|+ +..+|+||.|++.+= | +|.= .-|...-|+.+ +.-+.=.++||+++.+.||++++.+.
T Consensus 253 Y~~FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLDVV 332 (757)
T KOG0470|consen 253 YLGFTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLLDVV 332 (757)
T ss_pred hhhhhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCcccchHHHHHHHHHHhhCCcEEehhhh
Confidence 8888888 999999999998731 1 2210 11222112222 12244579999999999999999887
Q ss_pred C
Q 009535 161 Q 161 (532)
Q Consensus 161 H 161 (532)
|
T Consensus 333 ~ 333 (757)
T KOG0470|consen 333 H 333 (757)
T ss_pred h
Confidence 6
No 165
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=23.53 E-value=4.5e+02 Score=24.60 Aligned_cols=51 Identities=18% Similarity=0.220 Sum_probs=31.8
Q ss_pred HHHHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecCCCCc
Q 009535 102 EDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSP 165 (532)
Q Consensus 102 eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~P 165 (532)
-|.+.+|+.|++.+=+=+. +|. +..|+ .|..-++.++++|| .+..+||-.|
T Consensus 12 id~~~~k~~gi~fviiKat------eG~-~y~D~----~~~~~~~~a~~aGl--~~G~Yhy~~~ 62 (184)
T cd06525 12 INFNAVKDSGVEVVYIKAT------EGT-TFVDS----YFNENYNGAKAAGL--KVGFYHFLVG 62 (184)
T ss_pred CCHHHHHhCCCeEEEEEec------CCC-cccCH----hHHHHHHHHHHCCC--ceEEEEEeeC
Confidence 3567777777664432221 232 34564 57788888888888 3678887654
No 166
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=23.24 E-value=8.2e+02 Score=25.30 Aligned_cols=39 Identities=26% Similarity=0.352 Sum_probs=32.3
Q ss_pred eeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecCC
Q 009535 123 RILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQF 162 (532)
Q Consensus 123 ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~ 162 (532)
+..|... +-++.+-+..++++.+.++++|-..++=|+|-
T Consensus 62 ~~~~~~~-~~~~d~~~~~~~~l~~~vh~~G~~~~~QL~H~ 100 (336)
T cd02932 62 RITPGDL-GLWNDEQIEALKRIVDFIHSQGAKIGIQLAHA 100 (336)
T ss_pred CCCCCce-eecCHHHHHHHHHHHHHHHhcCCcEEEEccCC
Confidence 3444433 56788899999999999999999999999994
No 167
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=23.22 E-value=2.5e+02 Score=36.04 Aligned_cols=66 Identities=17% Similarity=0.313 Sum_probs=47.0
Q ss_pred hhchHHHHHHHHHcCCCeeEeccccc---------------eeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEec-
Q 009535 97 YHRYLEDIDLMESLGVNSYRFSISWA---------------RILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLT- 160 (532)
Q Consensus 97 y~ry~eDi~l~k~lG~~~~R~si~W~---------------ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~- 160 (532)
+....+-++-+++||++++=+|=-+. +|.|.= | +.+=+++++++|+++||.+|+++.
T Consensus 757 f~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~l--G-----~~edf~~Lv~~ah~~Gi~vilDiV~ 829 (1693)
T PRK14507 757 FADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEI--G-----GEEGFERFCAALKAHGLGQLLDIVP 829 (1693)
T ss_pred HHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCccc--C-----CHHHHHHHHHHHHHCCCEEEEEecc
Confidence 45577788999999999997664443 333331 2 345579999999999999999764
Q ss_pred -CCC-----CcHhHH
Q 009535 161 -QFD-----SPQEIE 169 (532)
Q Consensus 161 -H~~-----~P~~l~ 169 (532)
|.. .|.|..
T Consensus 830 NH~~~~~~~n~w~~d 844 (1693)
T PRK14507 830 NHMGVGGADNPWWLD 844 (1693)
T ss_pred cccCCCccCCHHHHH
Confidence 654 555543
No 168
>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain
Probab=22.91 E-value=2.4e+02 Score=27.80 Aligned_cols=66 Identities=9% Similarity=0.107 Sum_probs=42.9
Q ss_pred ccChHHHHHHHHHHHHHcC-CCCEEEeecCccCCCCCCCCCCCccCchhhHHHHHHHHHHHHHHHH--cCCCeEEEE
Q 009535 396 NVYPQGMWKIIKYIKERYK-NTPMFITENGYGEICMPNSSTEDLLNDVKRVEYMASYLDALITAVR--DGADVRGYF 469 (532)
Q Consensus 396 ~i~P~GL~~~L~~~~~rY~-~~PI~ITENG~~~~~~~~~~~~g~i~D~~Ri~yl~~hl~~v~~Ai~--dGv~V~GY~ 469 (532)
.++=+.|..+..++..|=. ..=++|---|.+..+. .-...--+||..||+++.+.|+ .+|.+.|-=
T Consensus 116 niDGeAl~~a~~rL~~r~e~rkiLiViSDG~P~d~s--------t~~~n~~~~L~~HLr~vi~~ie~~~~Vel~aiG 184 (219)
T PF11775_consen 116 NIDGEALRWAAERLLARPEQRKILIVISDGAPADDS--------TLSANDGDYLDAHLRQVIAEIETRSDVELIAIG 184 (219)
T ss_pred CCcHHHHHHHHHHHHcCCccceEEEEEeCCCcCccc--------ccccCChHHHHHHHHHHHHHHhccCCcEEEEEE
Confidence 4565667666666655521 1226666677776432 1123455799999999999997 489998854
No 169
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=22.91 E-value=3.5e+02 Score=27.75 Aligned_cols=58 Identities=19% Similarity=0.284 Sum_probs=39.0
Q ss_pred hHHHHHHHHHcCCCeeE-eccc-c-----ceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecCCCCc
Q 009535 100 YLEDIDLMESLGVNSYR-FSIS-W-----ARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSP 165 (532)
Q Consensus 100 y~eDi~l~k~lG~~~~R-~si~-W-----~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~P 165 (532)
.+|.++.||++|++.+- .+++ - .++.|.. ... +-+.+.|+.+++.||++..++. +++|
T Consensus 106 ~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~----~t~---~~~l~~i~~a~~~Gi~~~s~~i-iG~~ 170 (309)
T TIGR00423 106 IEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNK----LSS---DEWLEVIKTAHRLGIPTTATMM-FGHV 170 (309)
T ss_pred HHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCC----CCH---HHHHHHHHHHHHcCCCceeeEE-ecCC
Confidence 47889999999999885 2321 1 1222332 232 5567999999999999887764 3444
No 170
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=22.91 E-value=1.8e+02 Score=31.75 Aligned_cols=60 Identities=15% Similarity=0.196 Sum_probs=40.5
Q ss_pred HHHHHHHHHcCCCeeEeccc-cc-eeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecCCCCc
Q 009535 101 LEDIDLMESLGVNSYRFSIS-WA-RILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSP 165 (532)
Q Consensus 101 ~eDi~l~k~lG~~~~R~si~-W~-ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~P 165 (532)
+|.+++|+++|++.+-++++ -+ ++...-. -..+ ++.+.+.++.++++||.+.+++. +++|
T Consensus 287 ~e~l~~l~~aG~~~v~iGiES~s~~~L~~~~-K~~~---~~~~~~~i~~~~~~Gi~v~~~~I-iGlP 348 (472)
T TIGR03471 287 YETLKVMKENGLRLLLVGYESGDQQILKNIK-KGLT---VEIARRFTRDCHKLGIKVHGTFI-LGLP 348 (472)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHhc-CCCC---HHHHHHHHHHHHHCCCeEEEEEE-EeCC
Confidence 67789999999998888883 32 2221110 0123 35577899999999999887765 3455
No 171
>PHA02771 hypothetical protein; Provisional
Probab=22.91 E-value=76 Score=26.74 Aligned_cols=44 Identities=18% Similarity=0.224 Sum_probs=30.9
Q ss_pred HHHHHHcCCCCEEEeecCccCCCCCCCCCCCccCchhhHHHHHHHHHHHHHHHHcCCCeEEE-EeecccccccccC
Q 009535 407 KYIKERYKNTPMFITENGYGEICMPNSSTEDLLNDVKRVEYMASYLDALITAVRDGADVRGY-FVWSLLDSFEWTY 481 (532)
Q Consensus 407 ~~~~~rY~~~PI~ITENG~~~~~~~~~~~~g~i~D~~Ri~yl~~hl~~v~~Ai~dGv~V~GY-~~WSl~Dn~EW~~ 481 (532)
.++.-++ ++||.|||| +-.+.+..|--+.|| -.|-..|-|||.+
T Consensus 20 ~El~L~F-~~~l~ite~------------------------------ey~ELi~n~~l~~~~~d~~i~sD~yey~e 64 (90)
T PHA02771 20 IRINLMF-NKEIIVSYN------------------------------QFEEIIKDGDLTHRYADKNITSDFYEYRE 64 (90)
T ss_pred HHhhhhc-CCCeEecHH------------------------------HHHHHHcCCcceeeeccCCeehhhhhhhh
Confidence 3455566 479999998 444556666666666 4588899999865
No 172
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=22.80 E-value=4.3e+02 Score=28.22 Aligned_cols=92 Identities=16% Similarity=0.129 Sum_probs=52.1
Q ss_pred chHHHHHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEE-EecCCCCcHhHHHhhCCCCC
Q 009535 99 RYLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFV-TLTQFDSPQEIEDKYGAWLS 177 (532)
Q Consensus 99 ry~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~piv-tL~H~~~P~~l~~~~ggw~~ 177 (532)
...+-++.++++|++.+=+ ....+.|-+. ...... ...+++-+.|.++||++.. +..-|..|.+. .|++.+
T Consensus 33 ~~~e~i~~la~~GfdgVE~--~~~dl~P~~~--~~~e~~-~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~~---~g~las 104 (382)
T TIGR02631 33 DPVEAVHKLAELGAYGVTF--HDDDLIPFGA--PPQERD-QIVRRFKKALDETGLKVPMVTTNLFSHPVFK---DGGFTS 104 (382)
T ss_pred CHHHHHHHHHHhCCCEEEe--cccccCCCCC--ChhHHH-HHHHHHHHHHHHhCCeEEEeeccccCCcccc---CCCCCC
Confidence 4688899999999998854 3334455431 111111 3367788889999999654 43223334332 277877
Q ss_pred h--hhHHHHHHHHHH---HHHHhCCC
Q 009535 178 P--ESQEDFGYFADI---CFKSFGDR 198 (532)
Q Consensus 178 ~--~~~~~f~~ya~~---~~~~fgd~ 198 (532)
+ ++.+.-.++.+. +++.+|-.
T Consensus 105 ~d~~vR~~ai~~~kraId~A~eLGa~ 130 (382)
T TIGR02631 105 NDRSVRRYALRKVLRNMDLGAELGAE 130 (382)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 5 333333333333 34556653
No 173
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=22.25 E-value=2e+02 Score=34.95 Aligned_cols=88 Identities=19% Similarity=0.189 Sum_probs=54.0
Q ss_pred HHHHHHcCCCCEEEeecCccCCCCCCCCCCCccCchhhHHHHHHHHHHHHHHHHcCCCeEEEEeeccccccccc---C--
Q 009535 407 KYIKERYKNTPMFITENGYGEICMPNSSTEDLLNDVKRVEYMASYLDALITAVRDGADVRGYFVWSLLDSFEWT---Y-- 481 (532)
Q Consensus 407 ~~~~~rY~~~PI~ITENG~~~~~~~~~~~~g~i~D~~Ri~yl~~hl~~v~~Ai~dGv~V~GY~~WSl~Dn~EW~---~-- 481 (532)
....+...+.|++++|.|.+..+. .|. ++ +-.++++.-=.+.|=|.|..+|-=-.. +
T Consensus 497 ~~~~~~~~~kP~i~~Ey~hamgn~-----~g~---------~~----~yw~~~~~~p~l~GgfiW~~~D~~~~~~~~~G~ 558 (1021)
T PRK10340 497 NEFGEYPHPKPRILCEYAHAMGNG-----PGG---------LT----EYQNVFYKHDCIQGHYVWEWCDHGIQAQDDNGN 558 (1021)
T ss_pred HHHHhCCCCCcEEEEchHhccCCC-----CCC---------HH----HHHHHHHhCCceeEEeeeecCcccccccCCCCC
Confidence 333333346899999998765432 111 12 233456666789999999999931100 0
Q ss_pred ---CCCCcc------------ceEEecCCCCcccccchHHHHHHHHHhCCC
Q 009535 482 ---GYTARF------------GLHHVDFATLKRTPKLSATWYKHFIAKHKL 517 (532)
Q Consensus 482 ---Gy~~rf------------GL~~VD~~~~~R~pK~S~~~y~~ii~~~~~ 517 (532)
+|.--| ||+. ..|+||++++.||++.+--.+
T Consensus 559 ~~~~ygGd~g~~p~~~~f~~~Glv~-----~dr~p~p~~~e~k~~~~pv~~ 604 (1021)
T PRK10340 559 VWYKYGGDYGDYPNNYNFCIDGLIY-----PDQTPGPGLKEYKQVIAPVKI 604 (1021)
T ss_pred EEEEECCCCCCCCCCcCcccceeEC-----CCCCCChhHHHHHHhcceEEE
Confidence 122222 4443 358999999999999875433
No 174
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=22.18 E-value=1.5e+02 Score=34.38 Aligned_cols=57 Identities=25% Similarity=0.385 Sum_probs=35.9
Q ss_pred HHHHHHcCCCeeEeccccceee----c-CC---CCC-------CCCh-----hHHHHHHHHHHHHHHcCCccEEEec
Q 009535 104 IDLMESLGVNSYRFSISWARIL----P-KG---RFG-------DVNS-----EGINHYNKLIDALLLKGIQPFVTLT 160 (532)
Q Consensus 104 i~l~k~lG~~~~R~si~W~ri~----P-~~---~~g-------~~n~-----~~l~~y~~~i~~l~~~gi~pivtL~ 160 (532)
|+-||+||++++=+.=-=.-.. + .+ .-| .++. ..++=++++|++|.++||++|+.+.
T Consensus 190 LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV 266 (688)
T TIGR02100 190 IDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDVV 266 (688)
T ss_pred hHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 7889999999997653111000 0 00 001 1111 1245589999999999999999875
No 175
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=22.03 E-value=7.2e+02 Score=24.65 Aligned_cols=82 Identities=12% Similarity=0.080 Sum_probs=0.0
Q ss_pred hHHHHHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEe--cCCCCcHhHHHhhCCCCC
Q 009535 100 YLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTL--TQFDSPQEIEDKYGAWLS 177 (532)
Q Consensus 100 y~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL--~H~~~P~~l~~~~ggw~~ 177 (532)
|+|-+++++++|++.+=+++......+.. -.++. ..-.++-+.+.++||++...- .|...| -+-.+
T Consensus 18 ~~e~l~~~~~~G~~~VEl~~~~~~~~~~~--~~~~~---~~~~~~~~~l~~~gl~i~~~~~~~~~~~~-------l~~~~ 85 (279)
T TIGR00542 18 WLERLQLAKTCGFDFVEMSVDETDDRLSR--LDWSR---EQRLALVNAIIETGVRIPSMCLSAHRRFP-------LGSKD 85 (279)
T ss_pred HHHHHHHHHHcCCCEEEEecCCccchhhc--cCCCH---HHHHHHHHHHHHcCCCceeeecCCCccCc-------CCCcC
Q ss_pred hhhHHHHHHHHHHHHH
Q 009535 178 PESQEDFGYFADICFK 193 (532)
Q Consensus 178 ~~~~~~f~~ya~~~~~ 193 (532)
+...+...++.+.+++
T Consensus 86 ~~~r~~~~~~~~~~i~ 101 (279)
T TIGR00542 86 KAVRQQGLEIMEKAIQ 101 (279)
T ss_pred HHHHHHHHHHHHHHHH
No 176
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=21.90 E-value=8.4e+02 Score=25.51 Aligned_cols=34 Identities=21% Similarity=0.267 Sum_probs=30.3
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCccEEEecCCCC
Q 009535 131 GDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDS 164 (532)
Q Consensus 131 g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~ 164 (532)
+-++.+-+..++++.+.++++|-..++=|+|.+.
T Consensus 73 ~~~~d~~i~~~r~l~d~vh~~G~~i~~QL~H~G~ 106 (337)
T PRK13523 73 GIWDDEHIEGLHKLVTFIHDHGAKAAIQLAHAGR 106 (337)
T ss_pred ecCCHHHHHHHHHHHHHHHhcCCEEEEEccCCCC
Confidence 4678889999999999999999999999999543
No 177
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=21.77 E-value=2.6e+02 Score=29.15 Aligned_cols=65 Identities=17% Similarity=0.320 Sum_probs=45.8
Q ss_pred chHHHHHHHHHcCCCeeEeccc----c-------ceeecCC--------CCCCCChhHHHHHHHHHHHHHHcCCccEEEe
Q 009535 99 RYLEDIDLMESLGVNSYRFSIS----W-------ARILPKG--------RFGDVNSEGINHYNKLIDALLLKGIQPFVTL 159 (532)
Q Consensus 99 ry~eDi~l~k~lG~~~~R~si~----W-------~ri~P~~--------~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL 159 (532)
..++-|+.|+..++|.+.+-++ | +.+-..+ ..|.+-+ +=++++++.++++||++|--+
T Consensus 19 ~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~---~di~elv~yA~~rgI~vIPEi 95 (329)
T cd06568 19 EVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQ---EDYKDIVAYAAERHITVVPEI 95 (329)
T ss_pred HHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCH---HHHHHHHHHHHHcCCEEEEec
Confidence 4677899999999999987773 4 2222111 0034555 445899999999999988877
Q ss_pred cCCCCcHhHH
Q 009535 160 TQFDSPQEIE 169 (532)
Q Consensus 160 ~H~~~P~~l~ 169 (532)
|+|....
T Consensus 96 ---D~PGH~~ 102 (329)
T cd06568 96 ---DMPGHTN 102 (329)
T ss_pred ---CCcHHHH
Confidence 7887653
No 178
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=21.61 E-value=7.5e+02 Score=24.37 Aligned_cols=53 Identities=15% Similarity=0.135 Sum_probs=36.6
Q ss_pred hHHHHHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEE
Q 009535 100 YLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFV 157 (532)
Q Consensus 100 y~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~piv 157 (532)
++|-++.++++|++.+=+++.=.+..+.. ..++. ....++-+.+.++||+...
T Consensus 18 ~~e~~~~~~~~G~~~iEl~~~~~~~~~~~--~~~~~---~~~~~l~~~l~~~Gl~i~~ 70 (284)
T PRK13210 18 WEERLVFAKELGFDFVEMSVDESDERLAR--LDWSK---EERLSLVKAIYETGVRIPS 70 (284)
T ss_pred HHHHHHHHHHcCCCeEEEecCCccccccc--ccCCH---HHHHHHHHHHHHcCCCceE
Confidence 68999999999999999876421111111 23444 3356888899999998654
No 179
>PF09585 Lin0512_fam: Conserved hypothetical protein (Lin0512_fam); InterPro: IPR011719 This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N terminus.
Probab=21.27 E-value=84 Score=27.72 Aligned_cols=31 Identities=23% Similarity=0.410 Sum_probs=26.3
Q ss_pred EEEeecCccCCCCCCCCCCCccCchhhHHHHHHHHHHHHHHHHc
Q 009535 418 MFITENGYGEICMPNSSTEDLLNDVKRVEYMASYLDALITAVRD 461 (532)
Q Consensus 418 I~ITENG~~~~~~~~~~~~g~i~D~~Ri~yl~~hl~~v~~Ai~d 461 (532)
.+|.|.|++. |..+.+|-+.-.++++.||..
T Consensus 2 r~~iE~GmG~-------------DlhGqD~TkAA~RAv~DAI~~ 32 (113)
T PF09585_consen 2 RLFIEMGMGN-------------DLHGQDYTKAAVRAVRDAISH 32 (113)
T ss_pred eEEEEecccc-------------cccCCcHHHHHHHHHHHHHhh
Confidence 5799999996 677888999999999999854
No 180
>cd00927 Cyt_c_Oxidase_VIc Cytochrome c oxidase subunit VIc. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. The VIc subunit is found only in eukaryotes and its specific function remains unclear. It has been reported that the relative concentrations of some nuclear encoded CcO subunits, including subunit VIc, compared to those of the mitochondrial encoded subunits, are altered significantly during the progression of prostate cancer.
Probab=20.78 E-value=57 Score=26.25 Aligned_cols=20 Identities=30% Similarity=0.566 Sum_probs=16.8
Q ss_pred cchhhhchH--HHHHHHHHcCC
Q 009535 93 AVDHYHRYL--EDIDLMESLGV 112 (532)
Q Consensus 93 a~d~y~ry~--eDi~l~k~lG~ 112 (532)
=.|||..|+ +|++.|+++|+
T Consensus 45 YadFYknYD~~kdFerM~~~G~ 66 (70)
T cd00927 45 YADFYKTYDAMKDFERMRKAGL 66 (70)
T ss_pred HHHHHHccChHHHHHHHHHcCC
Confidence 468888875 78999999997
No 181
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=20.73 E-value=3.2e+02 Score=31.12 Aligned_cols=48 Identities=13% Similarity=0.106 Sum_probs=33.2
Q ss_pred hHHHHHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecC
Q 009535 100 YLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQ 161 (532)
Q Consensus 100 y~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H 161 (532)
-++|++++++.|++.+|+..+-+.+ +-....|+.++++|....+++..
T Consensus 98 v~~~v~~A~~~Gvd~irif~~lnd~--------------~n~~~~i~~ak~~G~~v~~~i~~ 145 (592)
T PRK09282 98 VEKFVEKAAENGIDIFRIFDALNDV--------------RNMEVAIKAAKKAGAHVQGTISY 145 (592)
T ss_pred hHHHHHHHHHCCCCEEEEEEecChH--------------HHHHHHHHHHHHcCCEEEEEEEe
Confidence 4677899999999999998765544 12245556666677766666643
No 182
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=20.60 E-value=4.1e+02 Score=27.95 Aligned_cols=93 Identities=15% Similarity=0.158 Sum_probs=53.6
Q ss_pred HHHHHHHHHcCCCeeEecc-cc-ceeecCCCCCCCChhHHHHHHHHHHHHHHcCCcc-EEEecCCCCcHhHHHhhCCCCC
Q 009535 101 LEDIDLMESLGVNSYRFSI-SW-ARILPKGRFGDVNSEGINHYNKLIDALLLKGIQP-FVTLTQFDSPQEIEDKYGAWLS 177 (532)
Q Consensus 101 ~eDi~l~k~lG~~~~R~si-~W-~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~p-ivtL~H~~~P~~l~~~~ggw~~ 177 (532)
+|.+++|+++|++.+-+++ += .++...-. ...+. +-+.+.|+.+++.|+.+ -++|. +++|.
T Consensus 103 ~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~-R~~~~---~~~~~ai~~lr~~G~~~v~~dlI-~GlPg----------- 166 (353)
T PRK05904 103 QSQINLLKKNKVNRISLGVQSMNNNILKQLN-RTHTI---QDSKEAINLLHKNGIYNISCDFL-YCLPI----------- 166 (353)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHcC-CCCCH---HHHHHHHHHHHHcCCCcEEEEEe-ecCCC-----------
Confidence 6899999999999776666 22 22222210 12333 44678999999999974 45543 56663
Q ss_pred hhhHHHHHHHHHHHHHHhCCCceeEEEecCchh
Q 009535 178 PESQEDFGYFADICFKSFGDRVKYWFTINEPNM 210 (532)
Q Consensus 178 ~~~~~~f~~ya~~~~~~fgd~v~~w~t~NEp~~ 210 (532)
++.+.|.+=.+.+.+-=-+.|..+...=||..
T Consensus 167 -qt~e~~~~tl~~~~~l~p~~is~y~L~~~~gT 198 (353)
T PRK05904 167 -LKLKDLDEVFNFILKHKINHISFYSLEIKEGS 198 (353)
T ss_pred -CCHHHHHHHHHHHHhcCCCEEEEEeeEecCCC
Confidence 23445555555443322244444444445554
No 183
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=20.60 E-value=2e+02 Score=28.08 Aligned_cols=43 Identities=19% Similarity=0.265 Sum_probs=34.3
Q ss_pred HHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEe
Q 009535 105 DLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTL 159 (532)
Q Consensus 105 ~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL 159 (532)
+++|++|++.+=++=|=.| +.+. | -.+-+..++++||+|++++
T Consensus 75 ~mLkd~G~~~viiGHSERR-f~Et-----d------i~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 75 EMLKDIGAKGTLINHSERR-MKLA-----D------IEKKIARLKELGLTSVVCT 117 (205)
T ss_pred HHHHHcCCCEEEECcccCC-CCcc-----H------HHHHHHHHHHCCCEEEEEE
Confidence 7999999998877777666 3222 1 3678889999999999999
No 184
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=20.60 E-value=3.9e+02 Score=26.59 Aligned_cols=54 Identities=9% Similarity=0.029 Sum_probs=38.0
Q ss_pred hchHHHHHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHc-CCccEE
Q 009535 98 HRYLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLK-GIQPFV 157 (532)
Q Consensus 98 ~ry~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~-gi~piv 157 (532)
.-+++-+++++++|++.+=+.+......+.. ..+. +..+++.+.+.++ |+...+
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~---~~~~---~~~~~l~~~~~~~~~~~i~~ 64 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLSR---PLKK---ERAEKFKAIAEEGPSICLSV 64 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCCC---CCCH---HHHHHHHHHHHHcCCCcEEE
Confidence 5689999999999999998888765444332 2234 4456777777777 666443
No 185
>PF13547 GTA_TIM: GTA TIM-barrel-like domain
Probab=20.39 E-value=1.5e+02 Score=30.41 Aligned_cols=41 Identities=20% Similarity=0.285 Sum_probs=29.2
Q ss_pred CCEEEeecCccCCCCC----C-----C--------CCCCccCchhhHHHHHHHHHHHH
Q 009535 416 TPMFITENGYGEICMP----N-----S--------STEDLLNDVKRVEYMASYLDALI 456 (532)
Q Consensus 416 ~PI~ITENG~~~~~~~----~-----~--------~~~g~i~D~~Ri~yl~~hl~~v~ 456 (532)
+||..||-||+.-|.. + + -..|.++|.-...||+.++..-.
T Consensus 207 KpIwftE~GcpavDkgtNqPNvF~DpkSsEs~~P~~S~g~rDd~~Qr~~lea~~~~w~ 264 (299)
T PF13547_consen 207 KPIWFTEYGCPAVDKGTNQPNVFLDPKSSESALPYFSNGARDDLIQRRYLEATLGYWD 264 (299)
T ss_pred cceEEEecCCchhcCcCCCCccccCcccccccCCCCCCCCccHHHHHHHHHHHHHHhc
Confidence 6899999999876642 1 1 11377888888888877776655
No 186
>PRK09936 hypothetical protein; Provisional
Probab=20.19 E-value=9.1e+02 Score=24.97 Aligned_cols=63 Identities=19% Similarity=0.317 Sum_probs=45.7
Q ss_pred chHHHHHHHHHcCCCeeEeccccceeecCCCCCCCChhHHHHHHHHHHHHHHcCCccEEEecCCCCcHhHHH
Q 009535 99 RYLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIED 170 (532)
Q Consensus 99 ry~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~pivtL~H~~~P~~l~~ 170 (532)
.|++=++.++.+|+++. -+.|++. -+.+-|.- + .+..+.++.+.+.||+.+|.|+ +| |.|.+.
T Consensus 39 qWq~~~~~~~~~G~~tL--ivQWt~y-G~~~fg~~--~--g~La~~l~~A~~~Gl~v~vGL~-~D-p~y~q~ 101 (296)
T PRK09936 39 QWQGLWSQLRLQGFDTL--VVQWTRY-GDADFGGQ--R--GWLAKRLAAAQQAGLKLVVGLY-AD-PEFFMH 101 (296)
T ss_pred HHHHHHHHHHHcCCcEE--EEEeeec-cCCCcccc--h--HHHHHHHHHHHHcCCEEEEccc-CC-hHHHHH
Confidence 47777899999999986 4589888 22111222 2 4578999999999999999996 34 555553
No 187
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=20.13 E-value=5.2e+02 Score=26.87 Aligned_cols=68 Identities=19% Similarity=0.254 Sum_probs=43.1
Q ss_pred HHHHHHHHHcCCccEEEecCC-----CCcHhHHHh---------h------------C---CCCChhhHHHHHHHHHHHH
Q 009535 142 NKLIDALLLKGIQPFVTLTQF-----DSPQEIEDK---------Y------------G---AWLSPESQEDFGYFADICF 192 (532)
Q Consensus 142 ~~~i~~l~~~gi~pivtL~H~-----~~P~~l~~~---------~------------g---gw~~~~~~~~f~~ya~~~~ 192 (532)
.++|+.|+++|++.++.+.-+ +.|..-+.+ - + -|+||+.++.|.+.-+.+.
T Consensus 67 ~~m~~~l~~~g~~~~~~~~P~v~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~ 146 (339)
T cd06604 67 KELIKELHEQGFKVVTIIDPGVKVDPGYDVYEEGLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKFV 146 (339)
T ss_pred HHHHHHHHHCCCEEEEEEeCceeCCCCChHHHHHHHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHHh
Confidence 689999999999987655432 123222211 0 1 2688898988877666554
Q ss_pred HHhCCCceeEEEecCchhh
Q 009535 193 KSFGDRVKYWFTINEPNMQ 211 (532)
Q Consensus 193 ~~fgd~v~~w~t~NEp~~~ 211 (532)
..| -.-+|+=+|||..+
T Consensus 147 -~~G-vdg~w~D~~Ep~~~ 163 (339)
T cd06604 147 -DLG-VDGIWNDMNEPAVF 163 (339)
T ss_pred -hCC-CceEeecCCCcccc
Confidence 232 24567888999865
No 188
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=20.12 E-value=5.1e+02 Score=27.30 Aligned_cols=96 Identities=17% Similarity=0.164 Sum_probs=54.9
Q ss_pred HHHHHHHHHcCCCeeEecc-ccc-eeecCCCCCCCChhHHHHHHHHHHHHHHcCCc-cEEEecCCCCcHhHHHhhCCCCC
Q 009535 101 LEDIDLMESLGVNSYRFSI-SWA-RILPKGRFGDVNSEGINHYNKLIDALLLKGIQ-PFVTLTQFDSPQEIEDKYGAWLS 177 (532)
Q Consensus 101 ~eDi~l~k~lG~~~~R~si-~W~-ri~P~~~~g~~n~~~l~~y~~~i~~l~~~gi~-pivtL~H~~~P~~l~~~~ggw~~ 177 (532)
+|.+++|+++|++.+.+++ +-+ ++...-. ...+. +-..+.++.+++.|+. +.++|. +++|.
T Consensus 108 ~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~-R~~s~---~~~~~a~~~l~~~g~~~v~~dli-~GlPg----------- 171 (375)
T PRK05628 108 PEFFAALRAAGFTRVSLGMQSAAPHVLAVLD-RTHTP---GRAVAAAREARAAGFEHVNLDLI-YGTPG----------- 171 (375)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHcC-CCCCH---HHHHHHHHHHHHcCCCcEEEEEe-ccCCC-----------
Confidence 6889999999999777766 222 2221110 12232 4467889999999998 555553 45553
Q ss_pred hhhHHHHHHHHHHHHHHhCCCceeEEEecCchhhhh
Q 009535 178 PESQEDFGYFADICFKSFGDRVKYWFTINEPNMQVT 213 (532)
Q Consensus 178 ~~~~~~f~~ya~~~~~~fgd~v~~w~t~NEp~~~~~ 213 (532)
++.+.|.+=.+.+.+.=-+.+..+...-||+....
T Consensus 172 -qt~~~~~~tl~~~~~l~~~~i~~y~l~~~~gT~l~ 206 (375)
T PRK05628 172 -ESDDDWRASLDAALEAGVDHVSAYALIVEDGTALA 206 (375)
T ss_pred -CCHHHHHHHHHHHHhcCCCEEEeeeeecCCCChHH
Confidence 23444555455444322245555544456665443
Done!