Query 009536
Match_columns 532
No_of_seqs 489 out of 2441
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 07:25:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009536.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009536hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 9.2E-46 3.1E-50 371.4 36.7 437 85-530 10-485 (491)
2 3o7q_A L-fucose-proton symport 100.0 8.2E-38 2.8E-42 308.9 29.6 371 84-503 23-428 (438)
3 1pw4_A Glycerol-3-phosphate tr 100.0 6E-39 2E-43 318.3 13.6 396 84-507 25-433 (451)
4 4aps_A DI-OR tripeptide H+ sym 100.0 4.5E-33 1.5E-37 279.1 25.2 417 89-513 15-477 (491)
5 2gfp_A EMRD, multidrug resista 100.0 3.9E-34 1.3E-38 276.3 11.4 355 89-493 2-362 (375)
6 2xut_A Proton/peptide symporte 100.0 8.7E-30 3E-34 257.3 20.3 417 93-516 18-511 (524)
7 2cfq_A Lactose permease; trans 100.0 2.1E-31 7.2E-36 260.4 5.4 384 89-514 9-406 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.5 2.6E-14 9E-19 141.0 10.7 174 89-265 254-434 (451)
9 3o7q_A L-fucose-proton symport 99.3 4.9E-12 1.7E-16 124.2 12.8 168 330-504 30-226 (438)
10 2gfp_A EMRD, multidrug resista 99.3 4.9E-12 1.7E-16 121.3 11.9 163 341-513 15-180 (375)
11 2cfq_A Lactose permease; trans 99.3 3E-12 1E-16 124.6 8.6 144 123-267 258-403 (417)
12 4aps_A DI-OR tripeptide H+ sym 99.3 2.6E-11 9E-16 120.8 15.4 157 341-507 28-196 (491)
13 2xut_A Proton/peptide symporte 99.3 6.3E-11 2.2E-15 119.1 15.1 138 360-506 55-197 (524)
14 4gc0_A D-xylose-proton symport 99.2 1.7E-11 5.9E-16 122.2 8.6 170 96-268 286-467 (491)
15 2g9p_A Antimicrobial peptide l 43.6 5.3 0.00018 19.2 0.1 14 143-156 2-15 (26)
16 2dw3_A Intrinsic membrane prot 22.4 1.4E+02 0.0047 19.9 4.1 30 484-513 30-59 (77)
17 4dve_A Biotin transporter BIOY 21.0 1.3E+02 0.0045 24.7 4.8 25 130-154 99-123 (198)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=9.2e-46 Score=371.39 Aligned_cols=437 Identities=28% Similarity=0.490 Sum_probs=343.5
Q ss_pred hHHHHHHHHHHhhhhhhccccccchhHHHHHhhCCCC------ChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHH
Q 009536 85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEG------NPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQ 158 (532)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~ 158 (532)
-+.+.++.+++.++.+++.+.++.++|.+.++++.+. +..+.|++.+++.+|..+|++++|+++||+|||++++
T Consensus 10 ~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~ 89 (491)
T 4gc0_A 10 IFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLK 89 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 3455666778889999999999999999999885421 2456789999999999999999999999999999999
Q ss_pred HhhHHHHHHHHHHH------------------hhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHH
Q 009536 159 IDTIPLILGAIISA------------------QAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQV 220 (532)
Q Consensus 159 ~~~~~~~~~~~~~~------------------~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 220 (532)
++.+++.+++++++ +++|+++++++|+++|+|.|...+....+++|+.|+++|++..++.+.
T Consensus 90 ~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~ 169 (491)
T 4gc0_A 90 IAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQF 169 (491)
T ss_dssp HHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhh
Confidence 99999999999998 478999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCC-------cchhHHHHHhhHHHHHHHHHHhcccccChhHHhhcCChhHHHHHHHHHcCCcch
Q 009536 221 GTCLGIITSLFLGIPAEDD-------PHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEI 293 (532)
Q Consensus 221 ~~~~g~~~g~~~~~~l~~~-------~~~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (532)
+..+|.++++.++..+... ..+||+.+.+..+..++..+..+++||+|+|+..+++.+++.+.+++..+.+..
T Consensus 170 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~ 249 (491)
T 4gc0_A 170 AIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLA 249 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchh
Confidence 9999999988877544321 123999999999999999999999999999999999999999988877654443
Q ss_pred HHHHHHHHHHHHhccCCCcchhhhhhcCCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHHcCCCh--hHHHHHHHHHH
Q 009536 294 NKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITD--GALASLLVGVT 371 (532)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 371 (532)
.++..+......+.++. ......+ ..+...+......+..+.......+|.+.+.+..+... ........++.
T Consensus 250 ~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (491)
T 4gc0_A 250 TQAVQEIKHSLDHGRKT--GGRLLMF---GVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVI 324 (491)
T ss_dssp HHHHHHHHHHHHHHHHH--TTHHHHS---CCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhh--hhHHHHh---cccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHH
Confidence 33332222221111111 1111111 22334444555556667777888888888888777663 34556667888
Q ss_pred HHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccC
Q 009536 372 NFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSS 451 (532)
Q Consensus 372 ~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (532)
.+++.++.+++.||+|||+.++.+.....++++.+....... ......+...+++..++..+..++.+.+.+|++|
T Consensus 325 ~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fP 400 (491)
T 4gc0_A 325 NLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQ----APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFP 400 (491)
T ss_dssp HHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTT----CCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcc----cchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCC
Confidence 999999999999999999999988888888777766543321 2334445555566667777778888899999999
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHH------hhCcchhhHhHHHHHHHHHHhhheeeccCCCCCHHHHHHHhcC
Q 009536 452 NRTRGKIMGFSFSVHWVCNFLVGLFFLDLVE------TFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEIEMSLNA 525 (532)
Q Consensus 452 ~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (532)
++.|+++.|+.+.++++++++++.+.+.+.+ ..+....|++++++++++.++.++++||+|+|+++|+|+.+|+
T Consensus 401 t~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~ 480 (491)
T 4gc0_A 401 NAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEP 480 (491)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC-
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCC
Confidence 9999999999999999999999988876543 3456778889999999999988899999999999999998877
Q ss_pred CCCCC
Q 009536 526 NSTPG 530 (532)
Q Consensus 526 ~~~~~ 530 (532)
+++++
T Consensus 481 ~~~~~ 485 (491)
T 4gc0_A 481 ETKKT 485 (491)
T ss_dssp -----
T ss_pred CCccc
Confidence 65544
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=8.2e-38 Score=308.92 Aligned_cols=371 Identities=15% Similarity=0.109 Sum_probs=287.4
Q ss_pred chHHHHHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHH
Q 009536 84 PAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIP 163 (532)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~ 163 (532)
+++..+..+++..+..+++.....+.+|.+.+++|+ +..+.|++.+++.++..++++++|+++||+|||++++++.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~ 100 (438)
T 3o7q_A 23 SYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTL--TNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFL 100 (438)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHH
Confidence 345567777788888899989999999999999999 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHH---HhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCC-CC
Q 009536 164 LILGAIIS---AQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAE-DD 239 (532)
Q Consensus 164 ~~~~~~~~---~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~ 239 (532)
.+++.+++ +++++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+.++|.++++.+++.+. +.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 180 (438)
T 3o7q_A 101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN 180 (438)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTS
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999 888999999999999999999999999999999999999999999999999999999999999988 55
Q ss_pred cch------------------------hHHHHHhhHHHHHHHHHHhcc--cccChhHHhhcCChhHHHHHHHHHcCCcch
Q 009536 240 PHW------------------------WRTMLYIASLPGFILALGMQF--TVESPRWLCKGGMLNDAKAVIANLWGESEI 293 (532)
Q Consensus 240 ~~~------------------------wr~~f~~~~~~~~~~~~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (532)
.+. ||+.|++.+++.++..+..++ .||+++. +++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~----------------- 240 (438)
T 3o7q_A 181 VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---NHS----------------- 240 (438)
T ss_dssp SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT---CCC-----------------
T ss_pred cccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc---ccc-----------------
Confidence 544 999998877776665544433 3443320 000
Q ss_pred HHHHHHHHHHHHhccCCCcchhhhhhcCCcchHHHHHHHHHHHhhhcchhhHHHhHHHH-HHHc-CCC--hhHHHHHHHH
Q 009536 294 NKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLT-FQDV-GIT--DGALASLLVG 369 (532)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~--~~~~~~~~~~ 369 (532)
+++++..+..++++++++..+...+...+. .........+.+.+ +++. +.+ +.+.......
T Consensus 241 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 305 (438)
T 3o7q_A 241 -----------DAKQGSFSASLSRLARIRHWRWAVLAQFCY----VGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTM 305 (438)
T ss_dssp -----------CSSTTSHHHHHHHHTTCSHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred -----------cccccchhhhHHHHHhChHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHH
Confidence 001112224556677777655544443333 22344555666777 6665 655 4577777888
Q ss_pred HHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccc
Q 009536 370 VTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPEL 449 (532)
Q Consensus 370 ~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (532)
++.+++.++.|++.||+++|+.+..+..+.+++.+++.+. .......... +.........+....+..|.
T Consensus 306 ~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~ 375 (438)
T 3o7q_A 306 VCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA---------GGHVGLIALT-LCSAFMSIQYPTIFSLGIKN 375 (438)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHH-HHHHHHTTHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc---------CCcHHHHHHH-HHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999998888887777666551 2222222222 22222333456777887888
Q ss_pred cCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhC-cchhhHhHHHHHHHHHHh
Q 009536 450 SSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFG-VAPVYAGFGGVSLLSALF 503 (532)
Q Consensus 450 ~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~ 503 (532)
+|++ ++.+.++.. ...+|+.++|.+.|.+.|..| +...|.+.+++.++..++
T Consensus 376 ~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 428 (438)
T 3o7q_A 376 LGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_dssp CGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred cccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 8876 888888877 677999999999999999999 888888766555554443
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=6e-39 Score=318.34 Aligned_cols=396 Identities=14% Similarity=0.101 Sum_probs=293.0
Q ss_pred chHHHHHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHH
Q 009536 84 PAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIP 163 (532)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~ 163 (532)
.+++.+..++++.+...++...+.+.+|.+.+++ . +..+.|++.+++.++..++++++|+++||+|||++++++.++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~ 101 (451)
T 1pw4_A 25 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-F--SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 101 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-T--CSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c--cHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHH
Confidence 3566788888888999999999999999999999 8 888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh----hhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCC
Q 009536 164 LILGAIISAQ----AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDD 239 (532)
Q Consensus 164 ~~~~~~~~~~----a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 239 (532)
.+++.+++++ ++|++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|.+++++.+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 181 (451)
T 1pw4_A 102 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW 181 (451)
T ss_dssp HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999999999999999999999999999999999999999999999999999999887654
Q ss_pred cchhHHHHHhhHHHHHHHHH-HhcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhh
Q 009536 240 PHWWRTMLYIASLPGFILAL-GMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSEL 318 (532)
Q Consensus 240 ~~~wr~~f~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (532)
.++||+.|++.+++.++..+ ..++++|+|+....+...+.. ...+. +.+...++.........++.
T Consensus 182 ~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~---~~~~~~~~~~~~~~~~~~~~ 248 (451)
T 1pw4_A 182 FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYK----------NDYPD---DYNEKAEQELTAKQIFMQYV 248 (451)
T ss_dssp TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTC----------CC----------------CCTHHHHHHT
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhc----------ccccc---cchhhhhcccccccchHHHH
Confidence 43399999998888776544 445677776542211111000 00000 00000000111111113455
Q ss_pred hcCCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHH-cCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhc--CCchhhh
Q 009536 319 LEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQD-VGIT--DGALASLLVGVTNFAGALCASYLMDKE--GRQKLLI 393 (532)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~ 393 (532)
++++..+...+ ..+...........+.|.++++ .+.+ +.+.......++.+++.++.|++.||+ ++|+.+.
T Consensus 249 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~ 324 (451)
T 1pw4_A 249 LPNKLLWYIAI----ANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATG 324 (451)
T ss_dssp SSCHHHHHHHH----HHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HcCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHH
Confidence 55554443333 2233333455566777877776 4665 346777888899999999999999999 9998877
Q ss_pred hhHHHHH-HHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHh-cccccccccccccccCccccchhHHHHHHHHHH-HH
Q 009536 394 GSYLGMA-ISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFA-IGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWV-CN 470 (532)
Q Consensus 394 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-g~ 470 (532)
.+..+.. ++++++... ............+..+++ .+..+....+..|.+|++.|+++.|+.+.+.++ |.
T Consensus 325 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~ 396 (451)
T 1pw4_A 325 VFFMTLVTIATIVYWMN--------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGS 396 (451)
T ss_dssp HHHHHHHHHHHHHTTSC--------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh--------cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHH
Confidence 7666555 443333221 011222222222333333 223455667889999999999999999999999 99
Q ss_pred HHHHHHHHHHHHhhCcchhhHhHHHHHHHHHHhhhee
Q 009536 471 FLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYF 507 (532)
Q Consensus 471 ~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 507 (532)
.++|.+.|.+.+..|+...|++.+++.+++.++.++.
T Consensus 397 ~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 397 VAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888887777665543
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=100.00 E-value=4.5e-33 Score=279.06 Aligned_cols=417 Identities=13% Similarity=0.071 Sum_probs=261.3
Q ss_pred HHHHHHHhhhhhhccccccchh-HHHHHh-----hCCCCChhHHHHHHHHHHHHHHHHHHhhhccccc-cchhHHHHHhh
Q 009536 89 VLIASMSNFLFGYHIGVMNGPI-VSIAKE-----LGFEGNPILEGLVVSIFIAGAFVGSISSGSLADK-LGCRRTFQIDT 161 (532)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr-~Grr~~l~~~~ 161 (532)
++.+++..+...+......+.+ +.+.++ +|. +..+.+++.+++.++..++++++|+++|| +|||+++..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~ 92 (491)
T 4aps_A 15 LSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHI--TRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGG 92 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCS--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 3444444455554444443334 344454 888 99999999999999999999999999999 89999999999
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCccc--ccchhhHhHHHHHHHHHHHHHhcCCCCCC
Q 009536 162 IPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKY--RGSLGTLCQVGTCLGIITSLFLGIPAEDD 239 (532)
Q Consensus 162 ~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 239 (532)
++.+++.+++++++|++.++++|+++|++.+...+...+++.|++|+++ |+.++++++.+.++|..++|.+++.+.+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 172 (491)
T 4aps_A 93 VLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA 172 (491)
T ss_dssp HHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999988 77788889999999999999999999887
Q ss_pred cchhHHHHHhhHHHHHHHHHHhccc-ccChh----HHhhcCChhHHHHHHHH----------------HcCCcchHHHHH
Q 009536 240 PHWWRTMLYIASLPGFILALGMQFT-VESPR----WLCKGGMLNDAKAVIAN----------------LWGESEINKAIE 298 (532)
Q Consensus 240 ~~~wr~~f~~~~~~~~~~~~~~~~~-~~~p~----~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~ 298 (532)
.+ ||+.|++.++..++..+..++. ++..+ ....+.+.++..+..+. ..+..+.+....
T Consensus 173 ~g-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~ 251 (491)
T 4aps_A 173 AG-YHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYIN 251 (491)
T ss_dssp SC-HHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHH
T ss_pred hh-HHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchh
Confidence 77 9999999877776655544432 21110 00011112222221111 001100000000
Q ss_pred HH--------HHHHHhccCCCcchhhhhhcCCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHHc-CC--ChhHHHHHH
Q 009536 299 EF--------QLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDV-GI--TDGALASLL 367 (532)
Q Consensus 299 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~ 367 (532)
.. ........+....... .+++... .....+.....+........+.+.+.++. +. ...+.....
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (491)
T 4aps_A 252 LLTIVAIAIPVFYFAWMISSVKVTST--EHLRVVS--YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSL 327 (491)
T ss_dssp HHHHHHHHHHHHHHHHHC--------------CTT--HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTH
T ss_pred hhhHHHHHHHHHHHHHHhhcccccHH--HHHHHHH--HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhcc
Confidence 00 0000000000000000 1111111 11111111222222333444555555543 32 245677777
Q ss_pred HHHHHHHHhhhhHhhhhhcCCchhhh-----hhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhccccccc
Q 009536 368 VGVTNFAGALCASYLMDKEGRQKLLI-----GSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVT 442 (532)
Q Consensus 368 ~~~~~~~~~~~~g~l~d~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (532)
..++.+++.++.+++.||++||+... .+..+.+++++++......................++.........+..
T Consensus 328 ~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 407 (491)
T 4aps_A 328 NPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVG 407 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHH
T ss_pred chHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHH
Confidence 88888889999999999999987654 5666666665555442211000001122222222222222222335667
Q ss_pred ccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhHhHHHHHHHHHHhhheeeccCCC
Q 009536 443 GLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKG 513 (532)
Q Consensus 443 ~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (532)
..++.|.+|++.|+++.|+.+...++|..+++.+.+.+.+ .++...|.+.+++.+++.++.+++.++.++
T Consensus 408 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 408 LSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKRIQG 477 (491)
T ss_dssp HHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC------
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999887665 467778888888877777766666555443
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=100.00 E-value=3.9e-34 Score=276.34 Aligned_cols=355 Identities=14% Similarity=0.088 Sum_probs=263.8
Q ss_pred HHHHHHHhhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHH
Q 009536 89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA 168 (532)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~ 168 (532)
++++++..+...+....+.+.+|.+.+++|. +..+.+++.+++.++..++++++|+++||+|||+++..+.++.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 79 (375)
T 2gfp_A 2 LLMLVLLVAVGQMAQTIYIPAIADMARDLNV--REGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLAT 79 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSS--TTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhhHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHH
Confidence 3556777788888999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcchhHHHHH
Q 009536 169 IISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLY 248 (532)
Q Consensus 169 ~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~wr~~f~ 248 (532)
++++++++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++++.+..+ ||+.|+
T Consensus 80 ~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~ 158 (375)
T 2gfp_A 80 LVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN-WRACYL 158 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH-HHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc-HHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988777 999999
Q ss_pred hhHHHHHHHHH-HhcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcCCcchHH
Q 009536 249 IASLPGFILAL-GMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVA 327 (532)
Q Consensus 249 ~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (532)
+.++..++..+ ..+++||++++. +++++....+++.+++|..+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~ 204 (375)
T 2gfp_A 159 FLLVLCAGVTFSMARWMPETRPVD----------------------------------APRTRLLTSYKTLFGNSGFNCY 204 (375)
T ss_dssp HHHHHHHHHHCCCCCSSCCCSTTT----------------------------------CCCCCTTTCSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCcccCCCC----------------------------------cccccHHHHHHHHhcCcchHHH
Confidence 98888877766 445566664310 0111122345566666655444
Q ss_pred HHHHHHHHHhhhcchhhHHHhHHHHHHH-cCC--ChhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHH-HHHHH
Q 009536 328 FIGGALFLLQQFAGINGVLYFSSLTFQD-VGI--TDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLG-MAISM 403 (532)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-~~~~~ 403 (532)
.+...+.. ........+.|.++++ .+. ...+.......++.+++.++.+++.||++++ ...+... ..++.
T Consensus 205 ~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~ 278 (375)
T 2gfp_A 205 LLMLIGGL----AGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGL 278 (375)
T ss_dssp HHHHHHHH----HHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSS
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 43333322 2333344444444443 333 3456777778888999999999999998872 2222222 22222
Q ss_pred HHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcc-cccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009536 404 LLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVE 482 (532)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~ 482 (532)
..+..... .....+.........+++.+ ..+....+..|..| ++|+++.|+.+...++|..++|.+.|.+.+
T Consensus 279 ~~~~~~~~------~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 351 (375)
T 2gfp_A 279 LMWIPDWF------GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQ 351 (375)
T ss_dssp SSSHHHHH------HHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHH
T ss_pred HHHHHhhh------ccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11111000 01122222222222222222 35667788889988 789999999999999999999999999988
Q ss_pred hhCcchhhHhH
Q 009536 483 TFGVAPVYAGF 493 (532)
Q Consensus 483 ~~g~~~~~~~~ 493 (532)
..++...+.+.
T Consensus 352 ~~~~~~~~~~~ 362 (375)
T 2gfp_A 352 TGQGSLGLLMT 362 (375)
T ss_dssp HHHHHHHHHHH
T ss_pred CCcccHHHHHH
Confidence 87777666553
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.97 E-value=8.7e-30 Score=257.30 Aligned_cols=417 Identities=12% Similarity=0.028 Sum_probs=234.9
Q ss_pred HHHhhhhhhccccccchhH-HHHHhhC------CCCChhHHHHHHHHHHHHHHHHHHhhhcccccc-chhHHHHHhhHHH
Q 009536 93 SMSNFLFGYHIGVMNGPIV-SIAKELG------FEGNPILEGLVVSIFIAGAFVGSISSGSLADKL-GCRRTFQIDTIPL 164 (532)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~ 164 (532)
.+..+...+......+.++ .+.+++| . +..+.+++.+++.++..++.+++|+++||+ |||+++.++.++.
T Consensus 18 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~--s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~ 95 (524)
T 2xut_A 18 IASEACERFSFYGMRNILTPFLMTALLLSIPEEL--RGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIY 95 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSST--TTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 3344444444444444444 5677888 7 888999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHhhh-cHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhH---hHHHHHHHHHHHHHhcCCCCCCc
Q 009536 165 ILGAIISAQAH-SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTL---CQVGTCLGIITSLFLGIPAEDDP 240 (532)
Q Consensus 165 ~~~~~~~~~a~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~g~~~g~~~~~~l~~~~ 240 (532)
+++.+++++++ +++.++++|+++|++.+...+...+++.|++|+++|+++.+. .+.+.++|.+++|.+++.+.+..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 175 (524)
T 2xut_A 96 CVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF 175 (524)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999 999999999999999999999999999999999999877666 88999999999999999998877
Q ss_pred chhHHHHHhhHHHHHHHHHHhcccccChhHH-hhcCChhHHHHHH-HHHcCCcchHHH---HHHH---------------
Q 009536 241 HWWRTMLYIASLPGFILALGMQFTVESPRWL-CKGGMLNDAKAVI-ANLWGESEINKA---IEEF--------------- 300 (532)
Q Consensus 241 ~~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~--------------- 300 (532)
+ ||+.|++.++..++..+..++..+..+.. .++.+..+..+.. ...+......+. ....
T Consensus 176 g-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (524)
T 2xut_A 176 G-AAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPT 254 (524)
T ss_dssp C-HHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------------CTTHHHHHHHHHHHHHHHHHHTGGGTTT
T ss_pred c-HHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhhhhcccch
Confidence 7 99999998887776555543322111000 0000000000000 000000000000 0000
Q ss_pred ------------HHHHHhccCCCcchhhhh-----------hcCCcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHHcC
Q 009536 301 ------------QLVIKKDGSDLDSQWSEL-----------LEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVG 357 (532)
Q Consensus 301 ------------~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (532)
...+++. +..++++ .++++...............+........+.+.+..+.+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (524)
T 2xut_A 255 LGIVAGLCCAMVLVMGFVG----AGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMV 330 (524)
T ss_dssp TCSSHHHHHHHHHHHHHHH----TGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSC
T ss_pred hhhhhhhhhhhhhhhcccc----cchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcC
Confidence 0000000 0011000 011111111111111111111111111222233333333
Q ss_pred CC---hhHHHHHHHHHHHHHHhhhhHhhh----hhcCC----chhhhhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHH
Q 009536 358 IT---DGALASLLVGVTNFAGALCASYLM----DKEGR----QKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILG 426 (532)
Q Consensus 358 ~~---~~~~~~~~~~~~~~~~~~~~g~l~----d~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (532)
.. ..+.......++.+++..+.+++. +|.++ ++.+..+..+.+++++++.................+..
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (524)
T 2xut_A 331 KPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQIL 410 (524)
T ss_dssp CCSSSCHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHH
T ss_pred CCeeecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHH
Confidence 32 234444444445555555555553 44332 23445555555555544433110000000111222222
Q ss_pred HHHHHHHHhcccccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhh----------Cc-chhhHhHHH
Q 009536 427 TLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETF----------GV-APVYAGFGG 495 (532)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~----------g~-~~~~~~~~~ 495 (532)
..++.........+....+..|..|++.||+++|+.+...++|+.++|.+.+.+.+.. +. ...|++.++
T Consensus 411 ~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (524)
T 2xut_A 411 PYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAG 490 (524)
T ss_dssp HHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHH
Confidence 2222222222345667788899999999999999999999999999999999887632 21 223666777
Q ss_pred HHHHHHHhhheeeccCCCCCH
Q 009536 496 VSLLSALFAYYFIVETKGRSL 516 (532)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~ 516 (532)
+.+++.++.+++.++.++++.
T Consensus 491 ~~~~~~~~~~~~~~~~~~~~~ 511 (524)
T 2xut_A 491 FAILAAIVFALYARSYQMQDH 511 (524)
T ss_dssp HHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHhccchh
Confidence 777776666666665554443
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.96 E-value=2.1e-31 Score=260.37 Aligned_cols=384 Identities=12% Similarity=0.006 Sum_probs=241.9
Q ss_pred HHHHHHHhhhhhhccccccchhHH-HHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHH
Q 009536 89 VLIASMSNFLFGYHIGVMNGPIVS-IAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILG 167 (532)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~ 167 (532)
...+....+..........+.+|. +++++|. +..+.|++.+.+.++..++++++|+++||+|||++++++..+++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~--s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~ 86 (417)
T 2cfq_A 9 FWMFGLFFFFYFFIMGAYFPFFPIWLHDINHI--SKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVM 86 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCC--CTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 333444445555555566677776 4566898 8889999999999999999999999999999999999988877553
Q ss_pred HH---HHHhhhcH-HHHHHHHHHHhhhhhhhhhhhhHhhhhcCCc--ccccchhhHhHHHHHHHHHHHHHhcCCCCCCcc
Q 009536 168 AI---ISAQAHSL-DEMLWGRFLVGLGIGVNTVLVPIYISEVAPT--KYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPH 241 (532)
Q Consensus 168 ~~---~~~~a~~~-~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 241 (532)
.. .+.+++.. ..++..+++.|++.+...+.....+.++.++ ++|+...+....+..+|..++|.+++++.+ .+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~ 165 (417)
T 2cfq_A 87 FAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-IN 165 (417)
T ss_dssp HHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hc
Confidence 22 22233222 1245567777777666655555555555543 356777788877888899999999888765 34
Q ss_pred hhHHHHHhhHHHHHHHHHHhcccccChhHHhhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcC
Q 009536 242 WWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEE 321 (532)
Q Consensus 242 ~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (532)
||+.|++.++..++..+..++.+|+++. +.+.++ .. .++.++.....+++++++
T Consensus 166 -~~~~f~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-----------~~-----------~~~~~~~~~~~~~~~~~~ 219 (417)
T 2cfq_A 166 -NQFVFWLGSGCALILAVLLFFAKTDAPS---SATVAN-----------AV-----------GANHSAFSLKLALELFRQ 219 (417)
T ss_dssp -SHHHHTTTTTTTTTHHHHSCSSCCCCSC---SSCSSS-----------SS-----------SSCCCCCCHHHHHHHTTC
T ss_pred -hhHHHHHHHHHHHHHHHHHHHcCccccc---cccccc-----------cc-----------ccccccccHHHHHHHhcC
Confidence 9999998877766555555555544321 000000 00 000001111234456666
Q ss_pred CcchHHHHHHHHHHHhhhcchhhHHHhHHHHHHHc-C-----CChhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhh
Q 009536 322 PHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDV-G-----ITDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGS 395 (532)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~ 395 (532)
+..+...+....... .+.....+.|.++.+. + ....+.......++.+++.++.++++||+|||+.+..+
T Consensus 220 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~ 295 (417)
T 2cfq_A 220 PKLWFLSLYVIGVSC----TYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLA 295 (417)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred CchhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHH
Confidence 554443332222111 1112222244444432 2 11224555566677888999999999999999988877
Q ss_pred HHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCccccchhHHHH-HHHHHHHHHHHH
Q 009536 396 YLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFS-FSVHWVCNFLVG 474 (532)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~g~~i~~ 474 (532)
..+.+++.+++.+. .+....+....+...+. ....+....+.+|.+|++.|+++.++. +...++|++++|
T Consensus 296 ~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp 366 (417)
T 2cfq_A 296 GTIMSVRIIGSSFA--------TSALEVVILKTLHMFEV-PFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMS 366 (417)
T ss_dssp HHHHHHHHHHHTTC--------CSHHHHHHHTTHHHHHH-HHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh--------ccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 77666654444320 11111111111111111 112233457889999999999999994 888889999999
Q ss_pred HHHHHHHHhhCcchhhHhHHHHHHHHHHhhheeeccCCCC
Q 009536 475 LFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGR 514 (532)
Q Consensus 475 ~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (532)
.+.|.+.+..|+...|.+.+++.+++.++.+...+++++.
T Consensus 367 ~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~ 406 (417)
T 2cfq_A 367 VLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPL 406 (417)
T ss_dssp HHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTT
T ss_pred hhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCch
Confidence 9999999988888888888888888777666666655443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.52 E-value=2.6e-14 Score=140.98 Aligned_cols=174 Identities=14% Similarity=0.100 Sum_probs=145.9
Q ss_pred HHHHHHHhhhhhhccccccchhHHHHHh-hCCCCChhHHHHHHHHHHHHHHHHHHhhhcccccc--chhHHHHHhhHHHH
Q 009536 89 VLIASMSNFLFGYHIGVMNGPIVSIAKE-LGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKL--GCRRTFQIDTIPLI 165 (532)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~--Grr~~l~~~~~~~~ 165 (532)
++.+.+..++..+........+|.+.++ +|. +..+.+++.+.+.++..++.++.|++.||+ |||+.+..+..+..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 331 (451)
T 1pw4_A 254 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHF--ALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 331 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 4444555555555555566677777666 788 889999999999999999999999999999 99999988887776
Q ss_pred -HHHHHHHhh--hcHHHHHHHHHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHH-HHHHHHHhcCCCCCCcc
Q 009536 166 -LGAIISAQA--HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCL-GIITSLFLGIPAEDDPH 241 (532)
Q Consensus 166 -~~~~~~~~a--~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~~~~ 241 (532)
++.++..+. .+.+.+.++.++.|++.+...+....++.|.+|+++|+++.++.+....+ |..++|.+.+.+.+..+
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g 411 (451)
T 1pw4_A 332 TIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG 411 (451)
T ss_dssp HHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 666666665 47888888899999999989999899999999999999999999999999 99999999999988888
Q ss_pred hhHHHHHhhHHHHHHHHHHhcccc
Q 009536 242 WWRTMLYIASLPGFILALGMQFTV 265 (532)
Q Consensus 242 ~wr~~f~~~~~~~~~~~~~~~~~~ 265 (532)
|+..|++.+++.++..+..++++
T Consensus 412 -~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 412 -WDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888877766655543
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.35 E-value=4.9e-12 Score=124.16 Aligned_cols=168 Identities=14% Similarity=0.078 Sum_probs=121.2
Q ss_pred HHHHHHHhhhcchhhHHHhHHHHHHHcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHH
Q 009536 330 GGALFLLQQFAGINGVLYFSSLTFQDVGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVV 407 (532)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~ 407 (532)
......+.............|.+.++.+.+ +.++......++..++.++.|+++||+|||+.+..+..+.+++.++..
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~ 109 (438)
T 3o7q_A 30 LLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFW 109 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 333333333444456666777777888776 457888888999999999999999999999999999999998888773
Q ss_pred HHhcCCCCccchhhHHHHHHHHHHHHHhcc-cccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHH-HhhC
Q 009536 408 GATSLPLDEDFSHNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLV-ETFG 485 (532)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~-~~~g 485 (532)
.... ..+. ..+.+..+..+.+.+ ..+....++.|.+|+++|+.+.++.+....+|..++|.+.+.+. +..+
T Consensus 110 ~~~~------~~~~-~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~ 182 (438)
T 3o7q_A 110 PAAE------IMNY-TLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVP 182 (438)
T ss_dssp HHHH------TTCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSC
T ss_pred hccc------cccH-HHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3111 1222 222233333333333 34667788999999999999999999999999999999999988 4444
Q ss_pred -------------------------cchhhHhHHHHHHHHHHhh
Q 009536 486 -------------------------VAPVYAGFGGVSLLSALFA 504 (532)
Q Consensus 486 -------------------------~~~~~~~~~~~~~~~~~~~ 504 (532)
|+..|++.+++.++..++.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 226 (438)
T 3o7q_A 183 HQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLI 226 (438)
T ss_dssp CCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 6778876666655554443
No 10
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.34 E-value=4.9e-12 Score=121.34 Aligned_cols=163 Identities=12% Similarity=-0.004 Sum_probs=125.1
Q ss_pred chhhHHHhHHHHHHHcCCC--hhHHHHHHHHHHHHHHhhhhHhhhhhcCCchhhhhhHHHHHHHHHHHHHHhcCCCCccc
Q 009536 341 GINGVLYFSSLTFQDVGIT--DGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDF 418 (532)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (532)
.........|.+.++.+.+ +.++......++..++.++.|+++||+|||+.+..+..+..++.+++...
T Consensus 15 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--------- 85 (375)
T 2gfp_A 15 AQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT--------- 85 (375)
T ss_dssp HHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh---------
Confidence 4444555566666677765 45777888899999999999999999999999999999988888877762
Q ss_pred hhhHHHHHHHHHHHHHhcc-cccccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhHhHHHHH
Q 009536 419 SHNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVS 497 (532)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~ 497 (532)
++. ..+....+..+.+.+ ..+....++.|.+|+++|++++++.+....+|..++|.+.+.+.+..||+..|.+.+++.
T Consensus 86 ~~~-~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 164 (375)
T 2gfp_A 86 SSL-TVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLC 164 (375)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred ccH-HHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 222 222223333333333 456677888999999999999999999999999999999999998889999999888887
Q ss_pred HHHHHhhheeeccCCC
Q 009536 498 LLSALFAYYFIVETKG 513 (532)
Q Consensus 498 ~~~~~~~~~~~~~~~~ 513 (532)
++..+...+..||+++
T Consensus 165 ~~~~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 165 AGVTFSMARWMPETRP 180 (375)
T ss_dssp HHHHCCCCCSSCCCST
T ss_pred HHHHHHHHHHCcccCC
Confidence 7777655566666543
No 11
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.31 E-value=3e-12 Score=124.60 Aligned_cols=144 Identities=13% Similarity=0.020 Sum_probs=122.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHHhhhcHHHHHHHHHHHhhhhhhhhhhhhHhh
Q 009536 123 PILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYI 202 (532)
Q Consensus 123 ~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i 202 (532)
....++..++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.|++.+...+....++
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888888888899999999999999999999999999888888888888888888888888888777777788899
Q ss_pred hhcCCcccccchhhH-hHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHHhcc-cccC
Q 009536 203 SEVAPTKYRGSLGTL-CQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQF-TVES 267 (532)
Q Consensus 203 ~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~~~ 267 (532)
.|.+|++.|+.+.++ ++....+|..++|.+++++.+..+ ++..|.+.+++.++..+..++ .+|+
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~~~~~~ 403 (417)
T 2cfq_A 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH-HHHHHHHHHHHHHHHHHHHTTSSCCS
T ss_pred HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 999999999999998 488889999999999999887767 889999888887776655444 4544
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.30 E-value=2.6e-11 Score=120.83 Aligned_cols=157 Identities=11% Similarity=0.102 Sum_probs=116.1
Q ss_pred chhhHHHhHHHHHHH------cCCC--hhHHHHHHHHHHHHHHhhhhHhhhhh-cCCchhhhhhHHHHHHHHHHHHHHhc
Q 009536 341 GINGVLYFSSLTFQD------VGIT--DGALASLLVGVTNFAGALCASYLMDK-EGRQKLLIGSYLGMAISMLLVVGATS 411 (532)
Q Consensus 341 ~~~~~~~~~~~~~~~------~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~ 411 (532)
.+.....+.+.++++ .+.+ +.++......++..++.++.|+++|| +|||+++..+.++.+++.+++.+.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~-- 105 (491)
T 4aps_A 28 SYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALP-- 105 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSC--
T ss_pred HHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHh--
Confidence 333444445555544 5665 45788888899999999999999999 899999999998888888777651
Q ss_pred CCCCccchhhHHHHHHHHHHHHHhcc-cccccccccccccCccc--cchhHHHHHHHHHHHHHHHHHHHHHHHHhhCcch
Q 009536 412 LPLDEDFSHNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNRT--RGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAP 488 (532)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~g~~~ 488 (532)
.+...+....+ ..+.+.+ ..+....++.|.+|+++ |+.+.++.+...++|..++|.+.+.+.+..||+.
T Consensus 106 -------~~~~~~~~~~~-l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~ 177 (491)
T 4aps_A 106 -------FGASALFGSII-LIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHV 177 (491)
T ss_dssp -------CSTTHHHHHHH-HHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred -------hhHHHHHHHHH-HHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 12222222222 2233322 45667788999999988 7788888999999999999999999999999999
Q ss_pred hhHhHHHHHHHHHHhhhee
Q 009536 489 VYAGFGGVSLLSALFAYYF 507 (532)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~ 507 (532)
.|++.++..+++.++.++.
T Consensus 178 ~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 178 AFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9998877766666554433
No 13
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.25 E-value=6.3e-11 Score=119.14 Aligned_cols=138 Identities=10% Similarity=0.116 Sum_probs=106.3
Q ss_pred hhHHHHHHHHHHHHHHhhhhHhhhhhc-CCchhhhhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhc-c
Q 009536 360 DGALASLLVGVTNFAGALCASYLMDKE-GRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAI-G 437 (532)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 437 (532)
+.++......++..++.++.|+++||+ |||+.+..+.++.+++.+++.+.. .+...+.. ..+..+.+. .
T Consensus 55 ~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~-~~~l~g~~~~~ 125 (524)
T 2xut_A 55 VAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFE--------HSVQGFYT-GLFLIALGSGG 125 (524)
T ss_dssp THHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTS--------SCHHHHHH-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhc--------ccHHHHHH-HHHHHHHhccc
Confidence 567888888999999999999999999 999999999888888887776621 02222222 222333333 3
Q ss_pred cccccccccccccCccccchhHHH---HHHHHHHHHHHHHHHHHHHHHhhCcchhhHhHHHHHHHHHHhhhe
Q 009536 438 AGPVTGLVIPELSSNRTRGKIMGF---SFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYY 506 (532)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~g~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 506 (532)
..+...+++.|.+|+++|+++.+. .+...++|..++|.+.+.+.+..||+..|.+.+++.++..++.++
T Consensus 126 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 126 IKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp THHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred cchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 456777889999999999876666 888999999999999999999899999998888777666555443
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.21 E-value=1.7e-11 Score=122.18 Aligned_cols=170 Identities=16% Similarity=0.075 Sum_probs=118.9
Q ss_pred hhhhhhccccccchhHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHhhHHHHHHHHHHHhh-
Q 009536 96 NFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQA- 174 (532)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a- 174 (532)
.+........+....+.+.++.+. +............+...++.++.+++.||+|||+.++.+....+++.+..+..
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~ 363 (491)
T 4gc0_A 286 IFQQFVGINVVLYYAPEVFKTLGA--STDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAF 363 (491)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSSC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHhcchHHHHhcCC--CccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHH
Confidence 333334444445556777788777 66666777777888889999999999999999999999998888877766543
Q ss_pred ----hcHHHHHHH-HHHHhhhhhhhhhhhhHhhhhcCCcccccchhhHhHHHHHHHHHHHHHhcCCCCCCcc-----hhH
Q 009536 175 ----HSLDEMLWG-RFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPH-----WWR 244 (532)
Q Consensus 175 ----~~~~~l~~~-r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-----~wr 244 (532)
++...++.. -+..+++ ....+....+.+|.+|.+.|++++++......+|..+++.+...+.+... ++.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~ 442 (491)
T 4gc0_A 364 YTQAPGIVALLSMLFYVAAFA-MSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNG 442 (491)
T ss_dssp HTTCCHHHHHHHHHHHHHHHH-TTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTC
T ss_pred hcccchHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 122222222 2222222 23456777899999999999999999999999998888877665543211 155
Q ss_pred HHHHhhHHHHHHHHHH-hcccccCh
Q 009536 245 TMLYIASLPGFILALG-MQFTVESP 268 (532)
Q Consensus 245 ~~f~~~~~~~~~~~~~-~~~~~~~p 268 (532)
+.|++.+.++++..+. ++++||+.
T Consensus 443 ~~~~i~~~~~~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 443 FSYWIYGCMGVLAALFMWKFVPETK 467 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred HHHHHHHHHHHHHHHHHHheecCCC
Confidence 6777777777776554 46688874
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=43.59 E-value=5.3 Score=19.20 Aligned_cols=14 Identities=29% Similarity=0.396 Sum_probs=10.7
Q ss_pred hhhccccccchhHH
Q 009536 143 SSGSLADKLGCRRT 156 (532)
Q Consensus 143 ~~G~l~dr~Grr~~ 156 (532)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 35788889999864
No 16
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=22.42 E-value=1.4e+02 Score=19.90 Aligned_cols=30 Identities=7% Similarity=-0.367 Sum_probs=15.6
Q ss_pred hCcchhhHhHHHHHHHHHHhhheeeccCCC
Q 009536 484 FGVAPVYAGFGGVSLLSALFAYYFIVETKG 513 (532)
Q Consensus 484 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (532)
.||..++++...+.+++.-..-.++||..+
T Consensus 30 Ag~AAv~f~~~~~~lv~l~~iG~~LPE~Sr 59 (77)
T 2dw3_A 30 AGWAGGVFFGTLLLIGFFRVVGRMLPIQEN 59 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTTTCS
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhCchhcc
Confidence 455555555444444444444456676544
No 17
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=20.99 E-value=1.3e+02 Score=24.68 Aligned_cols=25 Identities=12% Similarity=0.030 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHhhhccccccchh
Q 009536 130 VSIFIAGAFVGSISSGSLADKLGCR 154 (532)
Q Consensus 130 ~s~~~l~~~~~~~~~G~l~dr~Grr 154 (532)
+.-|.+++.++..+.|++.||..++
T Consensus 99 TgGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 99 SGGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccc
Confidence 4567888888899999999987644
Done!