Query 009537
Match_columns 532
No_of_seqs 451 out of 2790
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 14:19:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009537.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009537hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2303 Predicted NAD synthase 100.0 5E-169 1E-173 1302.5 31.9 498 1-499 88-701 (706)
2 PLN02339 NAD+ synthase (glutam 100.0 4E-119 1E-123 1009.7 46.3 496 1-496 87-697 (700)
3 PRK02628 nadE NAD synthetase; 100.0 1.8E-68 3.9E-73 600.4 38.0 436 1-484 96-637 (679)
4 PRK13981 NAD synthetase; Provi 100.0 5.5E-56 1.2E-60 488.7 36.7 361 1-480 83-537 (540)
5 cd07570 GAT_Gln-NAD-synth Glut 100.0 2.1E-29 4.5E-34 252.0 20.0 167 2-199 84-251 (261)
6 TIGR03381 agmatine_aguB N-carb 100.0 1.2E-28 2.5E-33 248.7 18.6 171 2-200 87-267 (279)
7 cd07586 nitrilase_8 Uncharacte 100.0 1.5E-28 3.1E-33 246.9 18.8 170 2-201 81-257 (269)
8 cd07587 ML_beta-AS mammalian-l 100.0 1.4E-28 3E-33 259.0 17.0 165 6-199 166-347 (363)
9 cd07576 R-amidase_like Pseudom 100.0 4.3E-28 9.4E-33 241.0 18.0 164 1-200 82-247 (254)
10 cd07568 ML_beta-AS_like mammal 100.0 1.3E-27 2.8E-32 242.6 18.7 164 6-198 103-270 (287)
11 PLN00202 beta-ureidopropionase 100.0 1E-27 2.2E-32 255.5 18.2 167 6-201 187-370 (405)
12 PRK10438 C-N hydrolase family 100.0 1.9E-27 4.1E-32 238.7 17.3 162 5-201 85-247 (256)
13 cd07580 nitrilase_2 Uncharacte 99.9 5.6E-27 1.2E-31 235.7 16.5 164 2-197 86-254 (268)
14 cd07572 nit Nit1, Nit 2, and r 99.9 6.5E-27 1.4E-31 234.0 16.6 167 2-199 84-259 (265)
15 COG0388 Predicted amidohydrola 99.9 1.4E-26 3E-31 233.7 17.8 162 8-199 93-257 (274)
16 cd07573 CPA N-carbamoylputresc 99.9 1.9E-26 4.2E-31 233.3 18.1 166 6-199 92-269 (284)
17 cd07583 nitrilase_5 Uncharacte 99.9 1.9E-26 4E-31 229.7 17.1 163 3-200 84-248 (253)
18 PLN02747 N-carbamolyputrescine 99.9 2.5E-26 5.4E-31 234.7 17.9 169 3-199 94-276 (296)
19 PLN02798 nitrilase 99.9 3.2E-26 7E-31 233.1 16.8 165 5-199 99-272 (286)
20 cd07581 nitrilase_3 Uncharacte 99.9 5.5E-26 1.2E-30 226.3 17.9 167 2-201 82-251 (255)
21 cd07569 DCase N-carbamyl-D-ami 99.9 8.9E-26 1.9E-30 231.6 17.3 160 8-197 106-284 (302)
22 cd07584 nitrilase_6 Uncharacte 99.9 1.3E-25 2.8E-30 224.2 17.4 159 7-201 93-253 (258)
23 cd07585 nitrilase_7 Uncharacte 99.9 1.7E-25 3.7E-30 223.8 17.6 162 2-197 83-247 (261)
24 cd07565 aliphatic_amidase alip 99.9 2.2E-25 4.7E-30 228.1 18.7 158 7-200 99-259 (291)
25 cd07577 Ph0642_like Pyrococcus 99.9 2.1E-25 4.6E-30 223.2 17.0 157 2-195 83-243 (259)
26 PF02540 NAD_synthase: NAD syn 99.9 9.7E-26 2.1E-30 225.1 12.6 157 246-449 2-240 (242)
27 cd07582 nitrilase_4 Uncharacte 99.9 8.5E-25 1.9E-29 223.5 17.6 171 7-197 106-282 (294)
28 cd07564 nitrilases_CHs Nitrila 99.9 7.1E-25 1.5E-29 224.5 16.5 167 3-201 98-282 (297)
29 cd07579 nitrilase_1_R2 Second 99.9 8.5E-25 1.9E-29 222.4 16.2 158 2-193 79-255 (279)
30 cd07567 biotinidase_like bioti 99.9 1.1E-24 2.4E-29 223.9 16.3 148 8-192 127-279 (299)
31 PRK13286 amiE acylamide amidoh 99.9 2E-24 4.4E-29 225.9 18.2 157 7-200 113-272 (345)
32 cd07197 nitrilase Nitrilase su 99.9 2.8E-24 6E-29 212.4 17.9 159 3-197 85-245 (253)
33 cd07578 nitrilase_1_R1 First n 99.9 2.6E-24 5.7E-29 215.4 16.3 153 6-196 92-245 (258)
34 cd07574 nitrilase_Rim1_like Un 99.9 2.8E-24 6.1E-29 217.3 16.3 164 2-198 94-268 (280)
35 cd07575 Xc-1258_like Xanthomon 99.9 6.7E-24 1.4E-28 211.9 16.4 162 2-200 81-244 (252)
36 PLN02504 nitrilase 99.9 1.1E-23 2.3E-28 220.7 16.0 163 3-201 127-310 (346)
37 PRK13980 NAD synthetase; Provi 99.9 9.3E-24 2E-28 213.6 12.8 171 242-459 10-261 (265)
38 PRK13287 amiF formamidase; Pro 99.9 1.3E-22 2.9E-27 211.5 18.2 157 8-200 112-271 (333)
39 cd00553 NAD_synthase NAD+ synt 99.9 1.8E-22 3.8E-27 202.2 12.4 160 242-448 3-248 (248)
40 KOG0807 Carbon-nitrogen hydrol 99.9 5.5E-23 1.2E-27 199.5 8.0 169 7-203 107-282 (295)
41 COG0171 NadE NAD synthase [Coe 99.9 1.5E-21 3.3E-26 196.6 11.9 165 242-458 5-259 (268)
42 PRK00768 nadE NAD synthetase; 99.9 2.1E-21 4.6E-26 195.7 12.4 103 243-374 19-122 (268)
43 cd07571 ALP_N-acyl_transferase 99.9 4.7E-21 1E-25 193.9 14.8 145 7-190 87-251 (270)
44 PTZ00323 NAD+ synthase; Provis 99.8 6.4E-20 1.4E-24 187.7 12.3 99 243-373 27-125 (294)
45 cd07566 ScNTA1_like Saccharomy 99.8 3.5E-19 7.6E-24 182.9 12.1 141 7-162 98-264 (295)
46 PRK00876 nadE NAD synthetase; 99.7 1.4E-17 3.1E-22 172.7 15.1 91 243-369 13-104 (326)
47 TIGR00552 nadE NAD+ synthetase 99.7 7.7E-18 1.7E-22 169.0 11.9 89 244-368 4-92 (250)
48 KOG0806 Carbon-nitrogen hydrol 99.7 1.3E-17 2.7E-22 168.7 6.9 167 6-203 108-285 (298)
49 KOG0808 Carbon-nitrogen hydrol 99.7 8.5E-17 1.8E-21 157.8 11.1 164 5-197 175-355 (387)
50 PRK00302 lnt apolipoprotein N- 99.7 2.5E-16 5.5E-21 172.8 13.7 144 8-189 309-470 (505)
51 TIGR00546 lnt apolipoprotein N 99.6 4.7E-15 1E-19 157.7 11.0 124 8-167 248-391 (391)
52 PF00795 CN_hydrolase: Carbon- 99.5 7.8E-15 1.7E-19 138.9 6.9 93 2-114 92-186 (186)
53 PF03054 tRNA_Me_trans: tRNA m 99.5 6.3E-14 1.4E-18 147.1 7.8 117 263-417 1-143 (356)
54 COG0482 TrmU Predicted tRNA(5- 99.4 1.1E-12 2.5E-17 136.4 12.2 108 262-407 3-133 (356)
55 PRK12291 apolipoprotein N-acyl 99.3 6.1E-12 1.3E-16 135.3 11.7 113 6-149 276-406 (418)
56 PRK13825 conjugal transfer pro 99.1 9.2E-10 2E-14 117.4 12.4 115 5-144 263-386 (388)
57 PRK14665 mnmA tRNA-specific 2- 99.0 1.5E-09 3.2E-14 114.7 11.4 104 263-404 6-127 (360)
58 KOG2805 tRNA (5-methylaminomet 99.0 2.2E-09 4.7E-14 108.9 11.3 104 262-405 5-136 (377)
59 KOG0805 Carbon-nitrogen hydrol 99.0 1.8E-09 3.9E-14 106.2 10.4 157 5-197 122-299 (337)
60 COG0815 Lnt Apolipoprotein N-a 99.0 5.4E-09 1.2E-13 115.2 13.3 152 8-187 319-479 (518)
61 PRK14664 tRNA-specific 2-thiou 98.9 5.6E-09 1.2E-13 110.3 11.3 101 262-403 5-121 (362)
62 TIGR00420 trmU tRNA (5-methyla 98.8 1.9E-08 4.1E-13 106.2 12.0 102 264-403 2-130 (352)
63 PRK00143 mnmA tRNA-specific 2- 98.8 3.9E-08 8.5E-13 103.6 12.0 102 264-403 2-129 (346)
64 cd01998 tRNA_Me_trans tRNA met 98.8 4.3E-08 9.3E-13 103.4 12.0 103 264-404 1-127 (349)
65 PRK00509 argininosuccinate syn 98.6 7.2E-07 1.6E-11 95.4 14.7 101 262-401 2-120 (399)
66 COG1606 ATP-utilizing enzymes 98.6 2E-07 4.3E-12 92.9 8.9 74 253-365 10-83 (269)
67 TIGR00268 conserved hypothetic 98.6 3.2E-07 6.8E-12 92.5 10.5 102 252-400 4-117 (252)
68 PRK02628 nadE NAD synthetase; 98.5 4.1E-08 8.9E-13 111.9 1.4 81 383-464 558-654 (679)
69 PRK04527 argininosuccinate syn 98.5 9.3E-07 2E-11 94.4 11.3 101 263-401 3-120 (400)
70 PLN02347 GMP synthetase 98.4 1.4E-06 3.1E-11 96.6 10.9 76 252-364 218-295 (536)
71 TIGR00884 guaA_Cterm GMP synth 98.3 2.9E-06 6.3E-11 88.2 9.7 75 251-365 8-83 (311)
72 cd01996 Alpha_ANH_like_III Thi 98.3 7.4E-06 1.6E-10 75.7 10.6 72 264-372 3-75 (154)
73 PRK00074 guaA GMP synthase; Re 98.2 6.6E-06 1.4E-10 91.1 10.0 82 244-365 200-282 (511)
74 TIGR03573 WbuX N-acetyl sugar 98.2 2E-05 4.2E-10 83.1 13.0 72 255-363 50-123 (343)
75 PRK11106 queuosine biosynthesi 98.2 5.1E-06 1.1E-10 82.9 7.9 64 263-364 2-66 (231)
76 TIGR00364 exsB protein. This p 98.1 4.6E-06 9.9E-11 81.0 7.2 62 265-364 1-62 (201)
77 cd01990 Alpha_ANH_like_I This 98.1 6.3E-06 1.4E-10 79.8 7.8 93 265-400 1-105 (202)
78 COG0603 Predicted PP-loop supe 98.1 7.9E-06 1.7E-10 80.6 8.4 66 262-365 2-67 (222)
79 PRK13820 argininosuccinate syn 98.1 1.9E-05 4E-10 84.6 11.0 102 262-401 2-120 (394)
80 PRK00919 GMP synthase subunit 98.1 1.2E-05 2.7E-10 83.4 9.3 80 245-365 7-86 (307)
81 cd01997 GMP_synthase_C The C-t 98.1 1.1E-05 2.4E-10 83.4 8.5 64 264-364 1-65 (295)
82 PF00733 Asn_synthase: Asparag 98.0 1.9E-05 4.1E-10 77.7 9.1 67 261-364 16-82 (255)
83 PF06508 QueC: Queuosine biosy 98.0 1.5E-05 3.3E-10 78.3 7.5 65 264-366 1-66 (209)
84 cd01993 Alpha_ANH_like_II This 98.0 4.7E-05 1E-09 72.0 10.3 70 264-365 1-72 (185)
85 PRK01565 thiamine biosynthesis 97.9 3.3E-05 7.2E-10 82.9 8.9 98 263-400 177-289 (394)
86 cd01991 Asn_Synthase_B_C The C 97.8 4.3E-05 9.3E-10 76.7 7.5 64 263-363 16-79 (269)
87 TIGR01536 asn_synth_AEB aspara 97.7 0.00023 4.9E-09 77.9 11.8 95 241-371 230-329 (467)
88 PRK08349 hypothetical protein; 97.7 0.00023 4.9E-09 69.2 10.4 93 264-398 2-113 (198)
89 cd01712 ThiI ThiI is required 97.7 0.00028 6E-09 67.0 10.4 93 264-399 1-112 (177)
90 cd01713 PAPS_reductase This do 97.7 0.00014 2.9E-09 67.1 7.6 68 265-367 2-69 (173)
91 cd01994 Alpha_ANH_like_IV This 97.7 9.7E-05 2.1E-09 71.9 6.8 62 264-363 1-68 (194)
92 TIGR02432 lysidine_TilS_N tRNA 97.7 0.00016 3.4E-09 69.1 8.1 66 264-363 1-68 (189)
93 TIGR03108 eps_aminotran_1 exos 97.6 0.00026 5.6E-09 80.4 11.0 87 241-364 235-323 (628)
94 TIGR00032 argG argininosuccina 97.6 0.00019 4.1E-09 77.0 8.1 99 264-401 1-117 (394)
95 PLN00200 argininosuccinate syn 97.5 0.00026 5.5E-09 76.2 8.4 99 263-401 6-124 (404)
96 PRK08384 thiamine biosynthesis 97.5 0.00047 1E-08 73.8 10.3 96 263-401 181-295 (381)
97 TIGR03104 trio_amidotrans aspa 97.5 0.00053 1.2E-08 77.4 11.1 85 242-363 238-327 (589)
98 PRK14561 hypothetical protein; 97.5 0.00027 5.9E-09 68.7 7.2 60 264-364 2-61 (194)
99 TIGR00342 thiazole biosynthesi 97.5 0.00051 1.1E-08 73.3 9.7 96 263-401 173-286 (371)
100 cd01992 PP-ATPase N-terminal d 97.5 0.00036 7.8E-09 66.2 7.6 62 264-359 1-64 (185)
101 PRK09431 asnB asparagine synth 97.4 0.00089 1.9E-08 75.1 11.8 101 243-371 206-312 (554)
102 PTZ00077 asparagine synthetase 97.4 0.00071 1.5E-08 76.3 10.8 98 244-371 221-320 (586)
103 cd01995 ExsB ExsB is a transcr 97.4 0.00098 2.1E-08 62.7 10.0 87 264-401 1-87 (169)
104 cd01999 Argininosuccinate_Synt 97.4 0.00033 7.1E-09 75.0 7.6 98 265-400 1-116 (385)
105 PRK08576 hypothetical protein; 97.3 0.001 2.3E-08 72.2 10.3 68 254-359 226-293 (438)
106 KOG0571 Asparagine synthase (g 97.2 0.0011 2.4E-08 70.5 9.0 77 263-371 226-304 (543)
107 PLN02549 asparagine synthase ( 97.2 0.0015 3.3E-08 73.5 10.5 78 263-370 226-305 (578)
108 PF01171 ATP_bind_3: PP-loop f 97.2 0.00053 1.1E-08 65.6 5.2 68 264-363 1-68 (182)
109 COG0519 GuaA GMP synthase, PP- 97.1 0.0017 3.6E-08 66.0 8.6 67 260-363 19-86 (315)
110 COG0367 AsnB Asparagine syntha 97.1 0.0034 7.5E-08 70.2 11.7 91 242-368 208-302 (542)
111 TIGR03679 arCOG00187 arCOG0018 97.1 0.0016 3.5E-08 64.5 7.6 24 339-362 42-65 (218)
112 PRK13795 hypothetical protein; 97.0 0.0037 8E-08 71.3 11.3 84 243-365 225-308 (636)
113 COG0037 MesJ tRNA(Ile)-lysidin 96.9 0.0018 4E-08 66.1 6.4 69 263-365 22-90 (298)
114 PRK10696 tRNA 2-thiocytidine b 96.8 0.003 6.5E-08 63.9 6.9 69 262-363 29-97 (258)
115 PF02568 ThiI: Thiamine biosyn 96.7 0.0035 7.5E-08 61.3 6.9 72 263-372 4-83 (197)
116 PRK13794 hypothetical protein; 96.7 0.011 2.4E-07 65.2 11.6 80 245-362 231-310 (479)
117 PRK02090 phosphoadenosine phos 96.4 0.016 3.5E-07 58.2 9.1 73 252-363 31-103 (241)
118 PRK05253 sulfate adenylyltrans 96.3 0.035 7.6E-07 57.8 11.3 67 263-363 28-94 (301)
119 PF01507 PAPS_reduct: Phosphoa 96.3 0.016 3.5E-07 53.9 8.1 65 265-367 2-66 (174)
120 PRK08557 hypothetical protein; 96.3 0.037 8E-07 60.1 11.6 82 243-362 160-243 (417)
121 cd01986 Alpha_ANH_like Adenine 96.1 0.011 2.5E-07 51.0 5.6 19 265-283 1-19 (103)
122 PRK01269 tRNA s(4)U8 sulfurtra 96.0 0.028 6E-07 62.2 9.2 68 263-368 178-251 (482)
123 PRK10660 tilS tRNA(Ile)-lysidi 95.9 0.022 4.8E-07 62.1 7.7 67 263-362 16-84 (436)
124 COG2117 Predicted subunit of t 95.8 0.023 5.1E-07 53.6 6.6 59 265-363 3-61 (198)
125 PF00764 Arginosuc_synth: Argi 95.6 0.031 6.6E-07 60.0 7.3 63 266-366 1-64 (388)
126 PRK05370 argininosuccinate syn 95.4 0.051 1.1E-06 59.0 8.1 73 261-371 10-84 (447)
127 COG0137 ArgG Argininosuccinate 95.3 0.071 1.5E-06 56.7 8.8 67 262-366 4-71 (403)
128 KOG1622 GMP synthase [Nucleoti 95.1 0.12 2.7E-06 55.8 9.9 75 251-365 222-297 (552)
129 TIGR00289 conserved hypothetic 94.8 0.085 1.9E-06 52.6 7.4 28 339-366 44-71 (222)
130 COG0301 ThiI Thiamine biosynth 94.8 0.12 2.6E-06 55.4 8.8 71 263-371 176-253 (383)
131 COG1365 Predicted ATPase (PP-l 94.7 0.034 7.3E-07 54.7 4.0 56 263-359 61-116 (255)
132 TIGR00434 cysH phosophoadenyly 94.1 0.35 7.5E-06 47.3 9.8 61 263-361 14-74 (212)
133 TIGR02057 PAPS_reductase phosp 93.4 0.52 1.1E-05 47.0 9.8 56 262-354 25-80 (226)
134 TIGR02039 CysD sulfate adenyly 93.2 0.37 8E-06 50.1 8.5 67 263-363 20-86 (294)
135 cd01984 AANH_like Adenine nucl 92.9 0.36 7.8E-06 39.9 6.6 19 265-283 1-19 (86)
136 PRK12563 sulfate adenylyltrans 92.7 1.1 2.3E-05 47.1 11.1 67 262-362 37-103 (312)
137 KOG1706 Argininosuccinate synt 90.8 0.75 1.6E-05 47.8 7.3 58 260-357 3-60 (412)
138 COG0175 CysH 3'-phosphoadenosi 89.6 1 2.2E-05 45.9 7.3 67 263-367 40-106 (261)
139 TIGR03183 DNA_S_dndC putative 86.5 1.7 3.6E-05 47.8 6.9 68 262-358 13-87 (447)
140 TIGR00290 MJ0570_dom MJ0570-re 84.5 2.9 6.3E-05 41.8 7.0 22 341-362 46-67 (223)
141 COG2102 Predicted ATPases of P 83.6 4.9 0.00011 40.1 8.0 66 264-366 2-72 (223)
142 PRK06850 hypothetical protein; 83.5 2.7 5.8E-05 46.9 6.8 68 262-358 34-108 (507)
143 PF01902 ATP_bind_4: ATP-bindi 77.5 2.7 5.8E-05 41.9 4.0 22 342-363 47-68 (218)
144 KOG0573 Asparagine synthase [A 76.9 1.7 3.7E-05 47.3 2.5 22 262-283 250-271 (520)
145 COG3969 Predicted phosphoadeno 66.0 16 0.00034 38.9 6.5 23 261-283 26-48 (407)
146 TIGR02026 BchE magnesium-proto 53.4 91 0.002 34.7 10.3 33 329-361 342-374 (497)
147 TIGR00424 APS_reduc 5'-adenyly 53.3 59 0.0013 36.1 8.7 33 327-359 141-173 (463)
148 TIGR02055 APS_reductase thiore 53.2 33 0.00072 33.1 6.1 35 327-361 19-53 (191)
149 PLN02309 5'-adenylylsulfate re 53.0 64 0.0014 35.8 8.9 32 328-359 137-168 (457)
150 COG2205 KdpD Osmosensitive K+ 42.4 1.3E+02 0.0028 35.8 9.4 77 263-373 249-331 (890)
151 cd07568 ML_beta-AS_like mammal 41.4 90 0.002 31.5 7.4 70 100-170 38-122 (287)
152 PF13941 MutL: MutL protein 41.1 1.1E+02 0.0023 34.1 8.3 140 257-402 120-304 (457)
153 cd07581 nitrilase_3 Uncharacte 39.5 1.3E+02 0.0028 29.6 8.1 71 98-170 23-106 (255)
154 PF00701 DHDPS: Dihydrodipicol 39.3 1E+02 0.0022 31.5 7.4 41 252-292 26-66 (289)
155 PRK10490 sensor protein KdpD; 38.3 3.2E+02 0.0069 32.9 12.3 48 327-374 281-334 (895)
156 cd07572 nit Nit1, Nit 2, and r 37.8 1.3E+02 0.0028 29.7 7.8 72 98-170 24-109 (265)
157 TIGR03381 agmatine_aguB N-carb 36.1 1.5E+02 0.0033 29.6 8.0 70 98-170 25-110 (279)
158 cd07584 nitrilase_6 Uncharacte 33.8 1.8E+02 0.0039 28.7 8.0 69 100-170 27-111 (258)
159 COG0363 NagB 6-phosphogluconol 32.8 52 0.0011 33.2 4.0 34 239-272 6-41 (238)
160 PLN02798 nitrilase 32.7 1.8E+02 0.0039 29.5 8.0 70 99-170 36-119 (286)
161 KOG2840 Uncharacterized conser 32.5 1.9E+02 0.0041 30.8 8.0 75 263-367 52-126 (347)
162 PRK00881 purH bifunctional pho 31.8 83 0.0018 35.4 5.6 54 84-145 454-508 (513)
163 TIGR00683 nanA N-acetylneurami 31.3 1.9E+02 0.0042 29.7 8.0 89 240-359 13-102 (290)
164 cd07582 nitrilase_4 Uncharacte 30.8 1.5E+02 0.0032 30.2 7.1 45 126-171 79-125 (294)
165 PF09547 Spore_IV_A: Stage IV 30.6 1.8E+02 0.004 32.2 7.8 97 251-375 135-232 (492)
166 cd00408 DHDPS-like Dihydrodipi 30.4 2.6E+02 0.0056 28.2 8.7 29 250-278 20-48 (281)
167 cd07576 R-amidase_like Pseudom 30.3 2.3E+02 0.0049 27.8 8.1 70 98-170 25-106 (254)
168 COG1091 RfbD dTDP-4-dehydrorha 29.9 1.2E+02 0.0025 31.6 6.0 65 89-159 34-108 (281)
169 PLN02747 N-carbamolyputrescine 29.0 1.7E+02 0.0037 29.8 7.1 70 98-170 31-116 (296)
170 TIGR02313 HpaI-NOT-DapA 2,4-di 28.4 2.4E+02 0.0051 29.1 8.1 36 244-279 17-52 (294)
171 cd00954 NAL N-Acetylneuraminic 28.1 2.8E+02 0.0061 28.3 8.5 54 239-292 12-66 (288)
172 cd07583 nitrilase_5 Uncharacte 28.0 2.7E+02 0.0058 27.4 8.1 69 99-170 26-106 (253)
173 cd07564 nitrilases_CHs Nitrila 27.9 2.9E+02 0.0063 28.2 8.6 71 98-171 26-121 (297)
174 PRK12358 putative 6-phosphoglu 27.1 75 0.0016 31.8 4.0 36 240-277 7-42 (239)
175 KOG2555 AICAR transformylase/I 26.4 1.1E+02 0.0023 33.7 5.0 57 82-146 527-584 (588)
176 PF08111 Pea-VEAacid: Pea-VEAa 26.4 27 0.00059 19.8 0.4 12 450-461 2-13 (15)
177 PRK07106 5-aminoimidazole-4-ca 25.7 1.1E+02 0.0024 33.2 5.0 56 83-146 330-386 (390)
178 cd02903 Macro_BAL_like Macro d 25.5 2E+02 0.0043 26.1 6.2 37 298-334 43-82 (137)
179 PRK03359 putative electron tra 25.3 2E+02 0.0043 29.4 6.7 70 253-359 73-145 (256)
180 PRK03170 dihydrodipicolinate s 25.3 3.1E+02 0.0067 28.0 8.2 29 244-272 18-46 (292)
181 TIGR01198 pgl 6-phosphoglucono 24.5 1.1E+02 0.0023 30.6 4.5 32 241-272 4-37 (233)
182 cd07587 ML_beta-AS mammalian-l 23.6 2.9E+02 0.0062 29.6 7.8 70 100-170 98-185 (363)
183 cd07197 nitrilase Nitrilase su 23.5 3.3E+02 0.0072 26.3 7.8 68 99-169 25-106 (253)
184 PF10087 DUF2325: Uncharacteri 22.8 2E+02 0.0042 24.4 5.3 44 100-148 43-86 (97)
185 TIGR00674 dapA dihydrodipicoli 22.6 4.1E+02 0.009 27.0 8.6 34 239-272 10-43 (285)
186 PLN00202 beta-ureidopropionase 22.6 3.2E+02 0.0069 29.8 8.0 69 101-171 122-207 (405)
187 cd07571 ALP_N-acyl_transferase 22.6 2.3E+02 0.005 28.5 6.6 67 101-169 35-104 (270)
188 PF10624 TraS: Plasmid conjuga 22.5 25 0.00055 32.4 -0.4 21 255-277 131-151 (164)
189 COG4703 Uncharacterized protei 22.2 41 0.00089 27.6 0.8 43 440-491 26-68 (74)
190 KOG3147 6-phosphogluconolacton 22.2 1.1E+02 0.0023 31.3 3.9 35 238-272 13-49 (252)
191 PRK09762 galactosamine-6-phosp 21.9 1.1E+02 0.0023 30.5 4.0 32 240-273 7-38 (232)
192 cd03030 GRX_SH3BGR Glutaredoxi 21.4 2.5E+02 0.0053 24.1 5.5 36 328-363 2-40 (92)
193 PF00795 CN_hydrolase: Carbon- 20.5 3.1E+02 0.0066 25.3 6.6 68 99-168 28-113 (186)
194 PRK03620 5-dehydro-4-deoxygluc 20.2 3.7E+02 0.0081 27.7 7.7 36 244-279 24-59 (303)
195 cd07566 ScNTA1_like Saccharomy 20.2 4.9E+02 0.011 26.8 8.5 67 104-171 35-117 (295)
No 1
>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only]
Probab=100.00 E-value=4.9e-169 Score=1302.47 Aligned_cols=498 Identities=60% Similarity=1.029 Sum_probs=487.9
Q ss_pred CCeeeCCeeEEEEEEEeCCeEEEEEecccCCCCCCCcccccccccCCCCcccccccchhhhhhccCceeeccceeEEeCC
Q 009537 1 MPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFLLPHEISEALCQKSVPFGYGFIQFLD 80 (532)
Q Consensus 1 mPv~~~g~~YN~avvi~~GkIl~i~~K~hL~~~g~~~E~R~Ftpg~~~~~~e~~~lp~~i~~~~~q~~vPfGd~v~~~~~ 80 (532)
|||+|++.+|||++++.||+||.|+||+.|+|+|||||.|||+||.+++.+|+|.||.+|++.++|++|||||.|+++.|
T Consensus 88 mPv~hr~~ryNCrv~~~n~kil~IRpKm~lanDgnyRE~RwFt~W~~~~~~e~y~lP~~i~~~~~Q~tVPfGdavl~~~d 167 (706)
T KOG2303|consen 88 MPVMHRNVRYNCRVLFLNRKILLIRPKMWLANDGNYRESRWFTPWTRPRVTEEYQLPRMIQKHTGQETVPFGDAVLQTWD 167 (706)
T ss_pred CchhhhhhhhccceeecCCeEEEEcccceeccCCCchhhccccccccccccceeeccHHHHHHhCCeeecccceeeeecc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEeeecccCCCchHHHHHHhCCCeEEEEccCCCccCCcHHHHHHHHHHHHHHhCCeEEEEcCCcCCCCceeeeccEE
Q 009537 81 TAVAVEVCEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSC 160 (532)
Q Consensus 81 ~~iG~eICeDlw~P~~~~~~lal~GaeIIlnpSaS~~~~~k~~~r~~li~~~a~~~g~~yvyaN~~G~dg~~l~fdG~S~ 160 (532)
++||.|||||||+|.+||+.|+++|||||+|.|+|||++||++.|.+|+..++.++|++|+|+||.||||+|+|||||||
T Consensus 168 t~ig~EiCEEL~tp~sphi~mal~GVei~~NaSGShh~LrK~~~r~~li~~at~k~GGvYlyaNqrGCDG~RlYydGca~ 247 (706)
T KOG2303|consen 168 TCIGSEICEELWTPRSPHIDMALDGVEIITNASGSHHELRKLNTRVDLILNATSKCGGVYLYANQRGCDGDRLYYDGCAM 247 (706)
T ss_pred cchhHHHHHHHcCCCCcchhhhhCceEEEecCCccHHHHhhhhhhhHHHhcchhhcceEEEeeccCCCCCceeEecchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCcEEEecCCCCcCceeEEEEEEecchhhhhhccCCchhhhhhccCCccEEEEeeeccCCccccccCCCCccccCCC
Q 009537 161 VVVNGDMIAQGSQFSLRDVEVVVAQVDLDAVAGFRGSISSFQEQASCKTKISSVAVQYSLCQPFNLKMSLSGPLKITYHS 240 (532)
Q Consensus 161 I~~nG~ilaq~~~f~~~d~evi~a~VDl~~vr~~R~~~~s~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~p~~~~~~~ 240 (532)
|+.||+++||++||+++|++|++|+|||+++|++|..++|++.+++....|+||++||+++...+....++.|+++.+|+
T Consensus 248 Ia~NG~vlAqg~QFsl~DveVv~atvDle~vrsyR~~~~S~~~~as~~~~~~ri~v~~~ls~~~d~~~~~t~p~e~~~hs 327 (706)
T KOG2303|consen 248 IAMNGSVLAQGSQFSLDDVEVVTATVDLEDVRSYRASISSRGLQASRAVKYPRIHVDFELSQHFDLLATPTEPIEWKYHS 327 (706)
T ss_pred eeecceeeeecccccccceEEEEEEecHHHHHHHHhhhccccccccccCCcceeeecceeccccccccCCCCCcccccCC
Confidence 99999999999999999999999999999999999999999999988889999999999997666555889999999999
Q ss_pred cHHHHHhhHHHHHHHHHHHhCCCeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchh
Q 009537 241 PEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESR 320 (532)
Q Consensus 241 peeei~~~~a~~L~dylrrs~~~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~ 320 (532)
|+|||+.||||||||||||||+.|||||||||+|||++|+||++||++|++|++.||+||+.|++++..+ .+|+|++|+
T Consensus 328 PeeEia~GPacwlWdyLRRs~~aGfflPLSGG~DSsatA~iV~sMC~~V~~av~~g~eqv~~Dvr~i~~~-~~~~p~dp~ 406 (706)
T KOG2303|consen 328 PEEEIALGPACWLWDYLRRSGQAGFFLPLSGGVDSSATAAIVYSMCRQVCKAVQSGDEQVLADVRRIVND-ISYTPTDPA 406 (706)
T ss_pred cHHHhccCchHHHHHHHHhcCCCceEEecCCCccchHHHHHHHHHHHHHHHHHHcCchhhhhhhHHHhcC-CCcCCCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999876 589999999
Q ss_pred hccCCeEEEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEechHHHHHHHHHhhhhhCCCCCCc-----------------
Q 009537 321 EFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPRYK----------------- 383 (532)
Q Consensus 321 e~~~~~~~t~~m~t~nSs~~t~~~A~~LA~~iG~~h~~i~Id~~v~a~~~~f~~~~g~~p~~~----------------- 383 (532)
+|||++|+||||+|+|||+||+.+|++||++||++|.+++||++|++++++|..+||++|+|+
T Consensus 407 ~l~nri~~TcyMgSenSS~ETr~rak~La~~igs~H~~i~iD~~vsavl~lF~~vtGk~P~f~~~ggsn~enlaLQNiQA 486 (706)
T KOG2303|consen 407 DLCNRILYTCYMGSENSSKETRRRAKELANQIGSYHIDLNIDTAVSAVLSLFNLVTGKTPRFKSHGGSNRENLALQNIQA 486 (706)
T ss_pred HHHHhhhhhheeccccccHHHHHHHHHHHHhhcceeeeeeehHHHHHHHHHHHHHhCCCcceecCCCchhhhHhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q 009537 384 -------------------------------------------------------------------------------- 383 (532)
Q Consensus 384 -------------------------------------------------------------------------------- 383 (532)
T Consensus 487 RiRMvLaylfAqL~~wvr~~~GglLVLGSaNVDE~LrGYLTKYDCSSADINPIGgISK~DLr~Fl~~a~~~~~lp~L~~i 566 (706)
T KOG2303|consen 487 RIRMVLAYLFAQLLLWVRGRPGGLLVLGSANVDESLRGYLTKYDCSSADINPIGGISKTDLRRFLQYAKEKFGLPALQSI 566 (706)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCceEEEecCccchHhhhhhhhccccccccCCccCccHHHHHHHHHHHHHhcCchHHHHH
Confidence
Q ss_pred -------------------chhhhcCCCEeeeceeeEEEeecCCChHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHhhc
Q 009537 384 -------------------LDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSIN 444 (532)
Q Consensus 384 -------------------tDE~dmGmtY~~L~~~~rlr~~~~~gp~~m~~~L~~~w~~~~~~~~i~~kVk~ff~~~~~n 444 (532)
|||+||||||+||++||||||..+||||+||++|++.|+++++|+||+|||||||.+|++|
T Consensus 567 l~a~pTAELePl~~g~~~QtDE~dmGmTY~ELsv~GrlRK~~~cGPysMF~kLl~~W~~klsp~qvaEKVk~FF~~Y~iN 646 (706)
T KOG2303|consen 567 LDAPPTAELEPLTDGDYSQTDEADMGMTYAELSVFGRLRKVSKCGPYSMFCKLLHQWGDKLSPRQVAEKVKRFFSYYSIN 646 (706)
T ss_pred hcCCCcccccccccCcccccchhhhCccHHHHHHhHhhccccccCcHHHHHHHHHHhcCcCCHHHHHHHHHHHHhhheec
Confidence 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcCcCCcccccccCCCCCCCccccccccCCCCCcchhhHHHHHHhhhcCCCCC
Q 009537 445 RHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKELDGEKVPF 499 (532)
Q Consensus 445 rhKr~~~~Ps~h~e~ys~ddnr~d~r~fly~~~~~~~f~~i~~~~~~~~~~~~~~ 499 (532)
|||||++|||||||+||||||||||||||||++|||||+|||++|+++|+...+.
T Consensus 647 RHKmTvlTPsyHAE~YspeDnRfDlRpFLynp~w~wqfkkIde~v~~~e~~~~~~ 701 (706)
T KOG2303|consen 647 RHKMTVLTPSYHAENYSPEDNRFDLRPFLYNPSWPWQFKKIDEQVEQLEANSTKS 701 (706)
T ss_pred cccceecccccccccCCCccccccccccccCCCCchHHHHHHHHHHHhhhccCcc
Confidence 9999999999999999999999999999999999999999999999999876553
No 2
>PLN02339 NAD+ synthase (glutamine-hydrolysing)
Probab=100.00 E-value=4.4e-119 Score=1009.68 Aligned_cols=496 Identities=79% Similarity=1.296 Sum_probs=462.5
Q ss_pred CCeeeCCeeEEEEEEEeCCeEEEEEecccCCCCCCCcccccccccCCCCcccccccchhhhhhccCceeeccceeEEeCC
Q 009537 1 MPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFLLPHEISEALCQKSVPFGYGFIQFLD 80 (532)
Q Consensus 1 mPv~~~g~~YN~avvi~~GkIl~i~~K~hL~~~g~~~E~R~Ftpg~~~~~~e~~~lp~~i~~~~~q~~vPfGd~v~~~~~ 80 (532)
+|+.+++++|||++++.+|+|+++|||+|||++++|+|+|||+||+.....+.|.+|..+++++|+++||||+.+|+++|
T Consensus 87 ~p~~~~~~lYN~a~vi~~GkIlg~y~K~hLpny~~f~E~r~F~pG~~~~~~~~~~l~~~~~~~~g~~~vpfg~~~~~~~g 166 (700)
T PLN02339 87 MPVIHGGVRYNCRVFCLNRKILLIRPKMWLANDGNYRELRWFTAWKHKKKVEDFQLPEEIAEATSQKSVPFGDGYLQFLD 166 (700)
T ss_pred eeEEECCeEEEEEEEEeCCEEEEEEecccCCCCCccccccccccCccCCcceeeccccchhhccCCceeccCcceeecCC
Confidence 57788899999999999999999999999999999999999999987766788999999999999999999999999999
Q ss_pred ccEEEeeecccCCCchHHHHHHhCCCeEEEEccCCCccCCcHHHHHHHHHHHHHHhCCeEEEEcCCcCCCCceeeeccEE
Q 009537 81 TAVAVEVCEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSC 160 (532)
Q Consensus 81 ~~iG~eICeDlw~P~~~~~~lal~GaeIIlnpSaS~~~~~k~~~r~~li~~~a~~~g~~yvyaN~~G~dg~~l~fdG~S~ 160 (532)
++||++||||+|+|+.++..++++|||||+||||||+.++|...|.+++..++..+++.|+|||++|+++++++|+|+|+
T Consensus 167 ~~iGv~ICeDlwfPe~p~~~lAl~GAdII~n~sas~~~~gK~~~R~rai~n~sa~~~~~yvyaN~~Ge~~~~lvf~G~S~ 246 (700)
T PLN02339 167 TAVAAETCEELFTPQAPHIDLALNGVEIISNGSGSHHQLRKLNTRLDLIRSATHKCGGVYLYANQRGCDGGRLYYDGCAC 246 (700)
T ss_pred eEEEEEEecccCCChHHHHHHHHcCCeEEEECCCChhhcCCHHHHHHHHHHHHHHhCCcEEEEcCCccCCCceEEcCceE
Confidence 99999999999999666667999999999999999999999999999999999999999999999998878899999999
Q ss_pred EEeCCcEEEecCCCCcCceeEEEEEEecchhhhhhccCCchhhhhhccCCccEEEEeeeccCCccccccCCCCccccCCC
Q 009537 161 VVVNGDMIAQGSQFSLRDVEVVVAQVDLDAVAGFRGSISSFQEQASCKTKISSVAVQYSLCQPFNLKMSLSGPLKITYHS 240 (532)
Q Consensus 161 I~~nG~ilaq~~~f~~~d~evi~a~VDl~~vr~~R~~~~s~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~p~~~~~~~ 240 (532)
|++||++++++++|+++++++++++||++.++..|.+.+++..++.....++++.++|+++........+.+++++.++.
T Consensus 247 I~~~G~ilaea~~F~~~~~~vi~adIDl~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (700)
T PLN02339 247 IVVNGEVVAQGSQFSLQDVEVVTACVDLDAVVSFRGSISSFREQASSKKRVPSVAVPFKLCPPFSLSLVPSSPLKIRYHS 326 (700)
T ss_pred EeCCCcEeEecCCcccCCceEEEEEEehHHhhhHhhcCCchhhhhhcccccceeEEeeccCCccccccCCCCccccCCCC
Confidence 99999999999999876678999999999999999888888776655555778889998864221111356777888899
Q ss_pred cHHHHHhhHHHHHHHHHHHhCCCeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchh
Q 009537 241 PEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESR 320 (532)
Q Consensus 241 peeei~~~~a~~L~dylrrs~~~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~ 320 (532)
|+|||+++++|||||||+++|++|++||||||+|||++|+||++||+++++|++.|+++|++|++|+.+.+..++|++++
T Consensus 327 p~~ei~~~~~~~L~d~l~~~g~~g~vlglSGGiDSa~~a~lv~~~~~~~~~a~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 406 (700)
T PLN02339 327 PEEEIALGPACWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGSMCQLVVKAIREGDEQVKADARRIGNYADGEVPTDSK 406 (700)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCeEEEEccCCHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhccccccccccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999877778999999
Q ss_pred hccCCeEEEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEechHHHHHHHHHhhhhhCCCCCCc-----------------
Q 009537 321 EFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPRYK----------------- 383 (532)
Q Consensus 321 e~~~~~~~t~~m~t~nSs~~t~~~A~~LA~~iG~~h~~i~Id~~v~a~~~~f~~~~g~~p~~~----------------- 383 (532)
+||+++++|||||+.+||++|+++|++||+.||++|++|+|+++|+++.+.|...+|++|.|+
T Consensus 407 ~~~~~~~~~v~mp~~~ss~~t~~~A~~la~~lG~~~~~i~I~~~~~~~~~~~~~~~g~~~~f~~~~~~~~~d~~~~NiQA 486 (700)
T PLN02339 407 EFAKRIFYTVYMGSENSSEETRSRAKQLADEIGSSHLDVKIDGVVSAVLSLFQTLTGKRPRYKVDGGSNAENLALQNIQA 486 (700)
T ss_pred hhhcceeEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEeCHHHHHHHHHHhhhhcCCCccccccCCCcccchhhhcccH
Confidence 999999999999999999999999999999999999999999999999999988778777331
Q ss_pred --------------------------------------------------------------------------------
Q 009537 384 -------------------------------------------------------------------------------- 383 (532)
Q Consensus 384 -------------------------------------------------------------------------------- 383 (532)
T Consensus 487 R~R~~~l~~~A~l~~~~~~~~g~~LvlgTgN~sE~~~Gy~T~ygd~~~~~~pi~~l~Kt~v~~l~~~~~~~~~~~il~~i 566 (700)
T PLN02339 487 RIRMVLAFMLASLLPWVRGKSGFLLVLGSANVDEGLRGYLTKYDCSSADINPIGGISKQDLRSFLRWAATNLGYPSLAEV 566 (700)
T ss_pred HHHHHHHHHHHhhcchhhccCCceEEEcCCCcchhheeeeeecCCCCcCccccCCCcHHHHHHHHHHHHHhcCCCcHHHH
Confidence
Q ss_pred ------------------chhhhcCCCEeeeceeeEEEeecCCChHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHhhcc
Q 009537 384 ------------------LDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINR 445 (532)
Q Consensus 384 ------------------tDE~dmGmtY~~L~~~~rlr~~~~~gp~~m~~~L~~~w~~~~~~~~i~~kVk~ff~~~~~nr 445 (532)
+||+||||||++|+.|++||+..++||++||..|.+.|++.|++++|++|||+||++|++||
T Consensus 567 ~~~~pSaEL~p~~~~~~Q~dE~~lG~~Y~~l~~~~~l~~~~~~~p~~i~~~~~~~~~~~y~~~~i~~~~~~F~~~f~~nq 646 (700)
T PLN02339 567 EAAPPTAELEPIRDDYSQTDEEDMGMTYEELGVYGRLRKIFRCGPVSMFKNLCHEWNGRLSPSEVAAKVKDFFKYYSINR 646 (700)
T ss_pred hcCCCCcccccCCCCCCCCCHHHHCcCHHHHHHHHHHHhccCCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhh
Confidence 89999999999999999999999999999999999999888999999999999999999999
Q ss_pred cCcCcCCcccccccCCCCCCCccccccccCCCCCcchhhHHHHHHhhhcCC
Q 009537 446 HKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKELDGEK 496 (532)
Q Consensus 446 hKr~~~~Ps~h~e~ys~ddnr~d~r~fly~~~~~~~f~~i~~~~~~~~~~~ 496 (532)
|||+++|||||+|+||||||||||||||||++|+|||++||++|+++|.+.
T Consensus 647 ~Kr~~~~p~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (700)
T PLN02339 647 HKMTTLTPSYHAESYSPDDNRFDLRQFLYNTRWPYQFRKIDELVEELDGET 697 (700)
T ss_pred ccccccCCccccCCCCCCCCcccccccccCCCCchhHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999999999654
No 3
>PRK02628 nadE NAD synthetase; Reviewed
Probab=100.00 E-value=1.8e-68 Score=600.40 Aligned_cols=436 Identities=24% Similarity=0.314 Sum_probs=349.1
Q ss_pred CCeeeCCeeEEEEEEEeCCeEEEEEecccCCCCCCCcccccccccCCCCcccccccchhhhhhccCceeecc-ceeEEe-
Q 009537 1 MPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFLLPHEISEALCQKSVPFG-YGFIQF- 78 (532)
Q Consensus 1 mPv~~~g~~YN~avvi~~GkIl~i~~K~hL~~~g~~~E~R~Ftpg~~~~~~e~~~lp~~i~~~~~q~~vPfG-d~v~~~- 78 (532)
+|+..++++|||++++.+|+|+++|+|+|||+++.|+|+|||+||+.. |..+.+++|| +|||| +.+|++
T Consensus 96 ~p~~~~~~lyNsa~vi~~G~il~~y~K~hLp~~~~f~E~r~F~~G~~~--------~~~~~~~~g~-~vpfG~~~vf~~~ 166 (679)
T PRK02628 96 APLRVRHRLYNCAVVIHRGRILGVVPKSYLPNYREFYEKRWFAPGDGA--------RGETIRLCGQ-EVPFGTDLLFEAE 166 (679)
T ss_pred eEEEECCEEEEEEEEEcCCEEEEEeccccCCCCCcccccccccCCCCC--------CCceEeecCe-eeccCCceeEEec
Confidence 467788999999999999999999999999999999999999999863 1112345666 99999 478876
Q ss_pred --CCccEEEeeecccCCCchHHHHHHhCCCeEEEEccCCCccCCcHHHHHHHHHHHHHHhCCeEEEEcC-CcCCCCceee
Q 009537 79 --LDTAVAVEVCEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQ-QGCDGGRLYF 155 (532)
Q Consensus 79 --~~~~iG~eICeDlw~P~~~~~~lal~GaeIIlnpSaS~~~~~k~~~r~~li~~~a~~~g~~yvyaN~-~G~dg~~l~f 155 (532)
++++||++||||+|||+.+.+.++++|||||+||||||+..+|.++|..+++++|.+++++|+|+|+ .|+++++++|
T Consensus 167 ~~~g~kiGv~IC~DlwfPe~~~~~la~~GAdIil~psAsp~~~gk~~~r~~l~~~~aar~~~~~v~~n~~~G~~~~~~vf 246 (679)
T PRK02628 167 DLPGFVFGVEICEDLWVPIPPSSYAALAGATVLANLSASNITVGKADYRRLLVASQSARCLAAYVYAAAGVGESTTDLAW 246 (679)
T ss_pred ccCCcEEEEEEeccccccCchhhHHhcCCCEEEEeCCCCCcccCcHHHHHHHHHHHHHHhCcEEEEEecccccCCCCeEE
Confidence 6999999999999999767899999999999999999999999999999999999999999999997 5555578999
Q ss_pred eccEEEEeCCcEEEecCCCCcCceeEEEEEEecchhhhhhccCCchhhhhh---ccCCccEEEEeeeccCCccccccCCC
Q 009537 156 DGCSCVVVNGDMIAQGSQFSLRDVEVVVAQVDLDAVAGFRGSISSFQEQAS---CKTKISSVAVQYSLCQPFNLKMSLSG 232 (532)
Q Consensus 156 dG~S~I~~nG~ilaq~~~f~~~d~evi~a~VDl~~vr~~R~~~~s~~~~~~---~~~~~~~v~~~~~l~~~~~~~~~~~~ 232 (532)
+|+|+|+++|++++++++|+++ +++++++||++.++..|.+.+.+..... ....+.+| +|.++.+.... .+.+
T Consensus 247 ~G~S~I~~~G~vla~a~~f~~~-e~l~~adiDl~~v~~~R~~~~~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~ 322 (679)
T PRK02628 247 DGQTLIYENGELLAESERFPRE-EQLIVADVDLERLRQERLRNGSFDDNARHRDESAPFRTI--PFALDPPAGDL-GLRR 322 (679)
T ss_pred eCeEEEEcCCeEEEecCCCCCC-CcEEEEEEcHHHHHHHHhhcCCcccchhcccccCCceEE--EeeccCCcccc-cccC
Confidence 9999999999999999999864 5799999999999999877666654321 11234444 55554322211 2334
Q ss_pred CccccCCCcH---------HHHHhhHHHHHHHHHHHhCCCeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHH
Q 009537 233 PLKITYHSPE---------EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKAD 303 (532)
Q Consensus 233 p~~~~~~~pe---------eei~~~~a~~L~dylrrs~~~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~ 303 (532)
|+++.|+.|+ +++..++++||+||++++|.+|++||||||+||+++|+++. +|++
T Consensus 323 ~~~~~p~~p~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~vvvglSGGiDSal~l~l~~-------~a~~--------- 386 (679)
T PRK02628 323 PVERFPFVPSDPARLDQRCYEAYNIQVSGLAQRLRATGLKKVVIGISGGLDSTHALLVAA-------KAMD--------- 386 (679)
T ss_pred cCCCCCCCCcChhhhhhhHHHHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHH-------HHHH---------
Confidence 5666666664 78999999999999999999999999999999999888884 4532
Q ss_pred HHHhcccCCCCCCCchhhccCCeEEEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEechHHHHHHHHHhhhhhCC-CC--
Q 009537 304 AIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGK-RP-- 380 (532)
Q Consensus 304 ~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~t~nSs~~t~~~A~~LA~~iG~~h~~i~Id~~v~a~~~~f~~~~g~-~p-- 380 (532)
+++... ..+++++||+.+||+.|+++|++||+.||++|.+++|+++++++...+...+++ .+
T Consensus 387 --~lg~~~-------------~~v~~v~mp~~~ss~~s~~~a~~la~~LGi~~~~i~I~~~~~~~~~~l~~~~~~~~~~~ 451 (679)
T PRK02628 387 --RLGLPR-------------KNILAYTMPGFATTDRTKNNAVALMKALGVTAREIDIRPAALQMLKDIGHPFARGEPVY 451 (679)
T ss_pred --hhCCCc-------------ceEEEEECCCCCCCHHHHHHHHHHHHHhCCeEEEEEcHHHHHHHHHHhccccccCCccc
Confidence 133110 158999999999999999999999999999999999999999887665543221 11
Q ss_pred -----CCc---------------------------------chh-hhcCCCEeeeceee---------------------
Q 009537 381 -----RYK---------------------------------LDE-VDMGMTYEELSVYG--------------------- 400 (532)
Q Consensus 381 -----~~~---------------------------------tDE-~dmGmtY~~L~~~~--------------------- 400 (532)
|.+ |-- .|++..|..+...-
T Consensus 452 ~~t~~N~qaR~R~~~L~~~An~~g~lvl~Tgn~sE~~~Gy~T~~~GD~~~~~~~~~~l~Kt~v~~l~~~~~~~~~~~~~~ 531 (679)
T PRK02628 452 DVTFENVQAGERTQILFRLANQHGGIVIGTGDLSELALGWCTYGVGDHMSHYNVNASVPKTLIQHLIRWVIASGQFDEAV 531 (679)
T ss_pred chhhhhhhHHHHHHHHHHHHhhcCcEEEcCCchhhHHhCceecCCCCcccccccccCCcHHHHHHHHHHHHhhccccccc
Confidence 112 222 34444444433221
Q ss_pred --------------EEEe-----------ecCCChHHHHH-HHHHhhCCCCChHHHHHHHHHHHHHHhhcccCcCcCCcc
Q 009537 401 --------------RLRK-----------IFHCGPVSMFK-NLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPS 454 (532)
Q Consensus 401 --------------rlr~-----------~~~~gp~~m~~-~L~~~w~~~~~~~~i~~kVk~ff~~~~~nrhKr~~~~Ps 454 (532)
.|+- .+.+|||+++. -|.+.|..+++|++|+.+++++|+.| ||||||+ ||+
T Consensus 532 ~~ip~~i~~~~psaeL~p~~~~g~~~q~ded~lgpY~~~D~~l~~~~~~~~~~~~i~~~~~~~f~~~--~~~~~~~-~~~ 608 (679)
T PRK02628 532 SEVLLDILDTEISPELVPADKEGEIVQSTEDIIGPYELQDFFLYYFLRYGFRPSKIAFLAWHAWKDA--ERGAWPG-FPE 608 (679)
T ss_pred hhhHHHHhcCCCCccccCCCCCCCCCCcchhccCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcc--ccccCCC-Ccc
Confidence 0111 12468999999 55567888899999999999999988 9999998 999
Q ss_pred cccccCCCCCCCccccccccCCCCCcchhh
Q 009537 455 YHAESYSPEDNRFDLRQFLYNARWPYQFRK 484 (532)
Q Consensus 455 ~h~e~ys~ddnr~d~r~fly~~~~~~~f~~ 484 (532)
||++.|++++++..+|+|++ ..|++|||+
T Consensus 609 ~~~~~~~~~~v~~~~~~f~~-~~~~~qfKR 637 (679)
T PRK02628 609 DKRPAYDLATIKKWLEVFLR-RFFSSQFKR 637 (679)
T ss_pred hhcccCCHHHHHHHHHHHcc-hhchHhhCc
Confidence 99999999999999999998 678999986
No 4
>PRK13981 NAD synthetase; Provisional
Probab=100.00 E-value=5.5e-56 Score=488.65 Aligned_cols=361 Identities=24% Similarity=0.316 Sum_probs=308.1
Q ss_pred CCeeeCCeeEEEEEEEeCCeEEEEEecccCCCCCCCcccccccccCCCCcccccccchhhhhhccCceeeccceeEEeCC
Q 009537 1 MPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFLLPHEISEALCQKSVPFGYGFIQFLD 80 (532)
Q Consensus 1 mPv~~~g~~YN~avvi~~GkIl~i~~K~hL~~~g~~~E~R~Ftpg~~~~~~e~~~lp~~i~~~~~q~~vPfGd~v~~~~~ 80 (532)
+|+..++++||+++++.+|+|++.|+|+|||+++.|+|.+||++|+.. .+|++++
T Consensus 83 ~~~~~~~~~yNsa~vi~~G~i~~~y~K~~L~~~~~~~E~~~f~~G~~~-------------------------~~~~~~g 137 (540)
T PRK13981 83 HPWREGGKLYNAAALLDGGEVLATYRKQDLPNYGVFDEKRYFAPGPEP-------------------------GVVELKG 137 (540)
T ss_pred CcEeeCCcEEEEEEEEECCeEEEEEeeeeCCCCCCcCccccccCCCCc-------------------------eEEEECC
Confidence 356677899999999999999999999999999999999999999865 4789999
Q ss_pred ccEEEeeecccCCCchHHHHHHhCCCeEEEEccCCCccCCcHHHHHHHHHHHHHHhCCeEEEEcCCcCCCCceeeeccEE
Q 009537 81 TAVAVEVCEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSC 160 (532)
Q Consensus 81 ~~iG~eICeDlw~P~~~~~~lal~GaeIIlnpSaS~~~~~k~~~r~~li~~~a~~~g~~yvyaN~~G~dg~~l~fdG~S~ 160 (532)
+|||+.||+|+|+| ++.+.++++|||||++|++|++..++...|..+++.+|.+|+++++|||++|.+ ++.+|+|.|+
T Consensus 138 ~rigv~IC~D~~~p-e~~r~la~~Gadlil~psa~~~~~~~~~~~~~~~~~rA~En~~~vv~aN~vG~~-~~~~f~G~S~ 215 (540)
T PRK13981 138 VRIGVPICEDIWNP-EPAETLAEAGAELLLVPNASPYHRGKPDLREAVLRARVRETGLPLVYLNQVGGQ-DELVFDGASF 215 (540)
T ss_pred EEEEEEEehhhcCC-cHHHHHHHCCCcEEEEcCCCcccCCcHHHHHHHHHHHHHHhCCeEEEEecccCC-CceEEeCceE
Confidence 99999999999999 689999999999999999999998888889999999999999999999999988 6789999999
Q ss_pred EE-eCCcEEEecCCCCcCceeEEEEEEecchhhhhhccCCchhhhhhccCCccEEEEeeeccCCccccccCCCCccccCC
Q 009537 161 VV-VNGDMIAQGSQFSLRDVEVVVAQVDLDAVAGFRGSISSFQEQASCKTKISSVAVQYSLCQPFNLKMSLSGPLKITYH 239 (532)
Q Consensus 161 I~-~nG~ilaq~~~f~~~d~evi~a~VDl~~vr~~R~~~~s~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~p~~~~~~ 239 (532)
|+ |+|+++++++.|++ .++++++|++... +... ++.. .| +.
T Consensus 216 i~dp~G~il~~~~~~~e---~~l~~did~~~~~--------~~~~------------~~~~-----------~~----~~ 257 (540)
T PRK13981 216 VLNADGELAARLPAFEE---QIAVVDFDRGEDG--------WRPL------------PGPI-----------AP----PP 257 (540)
T ss_pred EECCCCCEeeecCCCCC---cEEEEEEeecCCC--------cccC------------CCCC-----------CC----CC
Confidence 99 99999999999864 6788999986311 1000 0000 01 12
Q ss_pred CcHHHHHhhHHHHHHHHHHHhCCCeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCch
Q 009537 240 SPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTES 319 (532)
Q Consensus 240 ~peeei~~~~a~~L~dylrrs~~~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~ 319 (532)
..++++..++++||+||++++|.++++|+||||+||+++|+|+. ++ ++.+
T Consensus 258 ~~~~~~~~~l~~~l~~~~~~~~~~~~vvglSGGiDSa~~a~la~-------~a--------------~g~~--------- 307 (540)
T PRK13981 258 EGEAEDYRALVLGLRDYVRKNGFPGVVLGLSGGIDSALVAAIAV-------DA--------------LGAE--------- 307 (540)
T ss_pred ChHHHHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHH-------HH--------------hCcC---------
Confidence 34689999999999999999999999999999999999999984 55 4433
Q ss_pred hhccCCeEEEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEechHHHHHHHHHhhhhh-CCCCCCc---------------
Q 009537 320 REFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLT-GKRPRYK--------------- 383 (532)
Q Consensus 320 ~e~~~~~~~t~~m~t~nSs~~t~~~A~~LA~~iG~~h~~i~Id~~v~a~~~~f~~~~-g~~p~~~--------------- 383 (532)
.+++++||+.++++.+.++|+++|+.+|+.|++++|+++++++...+...+ +.++...
T Consensus 308 ------~v~~~~~p~~~~~~~~~~~a~~~a~~lgi~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~N~~ar~R~~~l~~ 381 (540)
T PRK13981 308 ------RVRAVMMPSRYTSEESLDDAAALAKNLGVRYDIIPIEPAFEAFEAALAPLFAGTEPDITEENLQSRIRGTLLMA 381 (540)
T ss_pred ------cEEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEECHHHHHHHHHHhhhhhcCCCCCchHHHHHHHHHHHHHHH
Confidence 499999999999999999999999999999999999999999977665433 2222221
Q ss_pred -----------------------------------------------------------------------------chh
Q 009537 384 -----------------------------------------------------------------------------LDE 386 (532)
Q Consensus 384 -----------------------------------------------------------------------------tDE 386 (532)
+||
T Consensus 382 ~a~~~~~lvlgt~n~sE~~~Gy~t~~GD~~~~~~pi~~l~K~~v~~la~~~~~~~~~~~vp~~i~~~~psa~l~~~q~de 461 (540)
T PRK13981 382 LSNKFGSLVLTTGNKSEMAVGYATLYGDMAGGFAPIKDVYKTLVYRLCRWRNTVSPGEVIPERIITKPPSAELRPNQTDQ 461 (540)
T ss_pred HHhccCCEEEeCCccCHHHcCCeEecCCcccCccccCCCCHHHHHHHHHHHHhhcCCCcchHHHhCCCCCCCCCCCCcCc
Confidence 899
Q ss_pred hhcCCCEeeeceeeEEEeecCCChHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHhhcccCcCcCCcccccccCCCCCCC
Q 009537 387 VDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAESYSPEDNR 466 (532)
Q Consensus 387 ~dmGmtY~~L~~~~rlr~~~~~gp~~m~~~L~~~w~~~~~~~~i~~kVk~ff~~~~~nrhKr~~~~Ps~h~e~ys~ddnr 466 (532)
++|| ||++||.|.+.....+.+|.++... ++++ +.|+++++++.+|||||.++||++|+.+.+++
T Consensus 462 ~~l~-~Y~~lD~~l~~~~~~~~~~~~~~~~-------~~~~----~~~~~~~~~~~~~~~KR~~~pp~~~~~~~~~~--- 526 (540)
T PRK13981 462 DSLP-PYDVLDAILERLVEEEQSVAEIVAA-------GFDR----ATVRRVERLLYIAEYKRRQAAPGVKITRRAFG--- 526 (540)
T ss_pred cccC-CHHHHHHHHHHHHHcCCCHHHHHHc-------CCCH----HHHHHHHHHHHhchhccccCCCcceecCCCCC---
Confidence 9998 9999999999878888899888641 3664 67788889999999999999999999999987
Q ss_pred ccccccccCCCCCc
Q 009537 467 FDLRQFLYNARWPY 480 (532)
Q Consensus 467 ~d~r~fly~~~~~~ 480 (532)
+-|.||..+.|
T Consensus 527 ---~~~r~p~~~~~ 537 (540)
T PRK13981 527 ---RDRRYPITNRF 537 (540)
T ss_pred ---CCccCccccCc
Confidence 44568887766
No 5
>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases). Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their active site residues into different unrelated classes. This class of GAT domain belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this sub
Probab=99.97 E-value=2.1e-29 Score=251.96 Aligned_cols=167 Identities=36% Similarity=0.572 Sum_probs=150.4
Q ss_pred CeeeCCeeEEEEEEEeCCeEEEEEecccCCCCCCCcccccccccCCCCcccccccchhhhhhccCceeeccceeEEeCCc
Q 009537 2 PVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFLLPHEISEALCQKSVPFGYGFIQFLDT 81 (532)
Q Consensus 2 Pv~~~g~~YN~avvi~~GkIl~i~~K~hL~~~g~~~E~R~Ftpg~~~~~~e~~~lp~~i~~~~~q~~vPfGd~v~~~~~~ 81 (532)
|...++++||+++++.+|++++.|+|+||++++.|.|.+||++|+.. .+|+++++
T Consensus 84 ~~~~~~~~yNs~~~i~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~~-------------------------~~~~~~~~ 138 (261)
T cd07570 84 PLRHDGKLYNAAAVLQNGKILGVVPKQLLPNYGVFDEKRYFTPGDKP-------------------------DVLFFKGL 138 (261)
T ss_pred eEecCCCEEEEEEEEeCCEEEEEEECccCcCCccccccccCccCCCC-------------------------CeEEECCE
Confidence 45566889999999999999999999999999999999999999865 48999999
Q ss_pred cEEEeeecccCCCchHHHHHHhCCCeEEEEccCCCccCCcHHHHHHHHHHHHHHhCCeEEEEcCCcCCCCceeeeccEEE
Q 009537 82 AVAVEVCEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCV 161 (532)
Q Consensus 82 ~iG~eICeDlw~P~~~~~~lal~GaeIIlnpSaS~~~~~k~~~r~~li~~~a~~~g~~yvyaN~~G~dg~~l~fdG~S~I 161 (532)
|||+.||+|+|+|+.+.+.++++|||||++|++|++..++...|..+++++|.+|+++++++|++|.+ ++..|.|+|+|
T Consensus 139 ~ig~~IC~D~~fpe~~~r~~~~~ga~ll~~ps~~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~g~~-~~~~~~G~S~i 217 (261)
T cd07570 139 RIGVEICEDLWVPDPPSAELALAGADLILNLSASPFHLGKQDYRRELVSSRSARTGLPYVYVNQVGGQ-DDLVFDGGSFI 217 (261)
T ss_pred EEEEEeecccCCCCchHHHHHHcCCcEEEEeCCCccccCcHHHHHHHHHHHHHHhCCcEEEEeCCCCC-ceEEEECceEE
Confidence 99999999999996558999999999999999999888887788889999999999999999999987 66789999999
Q ss_pred E-eCCcEEEecCCCCcCceeEEEEEEecchhhhhhccCC
Q 009537 162 V-VNGDMIAQGSQFSLRDVEVVVAQVDLDAVAGFRGSIS 199 (532)
Q Consensus 162 ~-~nG~ilaq~~~f~~~d~evi~a~VDl~~vr~~R~~~~ 199 (532)
+ |+|+++++++.+ +.+++++|++.++..|...+
T Consensus 218 i~p~G~vl~~~~~~-----~~~~~~id~~~~~~~r~~~~ 251 (261)
T cd07570 218 ADNDGELLAEAPRF-----EEDLADVDLDRLRSERRRNS 251 (261)
T ss_pred EcCCCCEEEecCcc-----eEEEEEEEEecCcccccccC
Confidence 9 999999998865 46789999999998887643
No 6
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.
Probab=99.96 E-value=1.2e-28 Score=248.69 Aligned_cols=171 Identities=20% Similarity=0.270 Sum_probs=146.6
Q ss_pred CeeeCCeeEEEEEEEe-CCeEEEEEecccCCCCCCCcccccccccCCCCcccccccchhhhhhccCceeeccceeEEeCC
Q 009537 2 PVIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFLLPHEISEALCQKSVPFGYGFIQFLD 80 (532)
Q Consensus 2 Pv~~~g~~YN~avvi~-~GkIl~i~~K~hL~~~g~~~E~R~Ftpg~~~~~~e~~~lp~~i~~~~~q~~vPfGd~v~~~~~ 80 (532)
|.+.++++||+++++. +|++++.|+|+|||..+.+.|.+||++|+... .+|++++
T Consensus 87 ~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~~~~E~~~f~~G~~~~------------------------~~f~~~~ 142 (279)
T TIGR03381 87 FEKAGNAYYNSLAMIDADGSVLGVYRKSHIPDGPGYQEKFYFRPGDTGF------------------------KVWDTRY 142 (279)
T ss_pred eecCCCceEEeEEEECCCCCEEEEEEeeecCCCCCcccceeEccCCCCC------------------------ceEecCC
Confidence 3445678999999996 89999999999999776678999999997431 4899999
Q ss_pred ccEEEeeecccCCCchHHHHHHhCCCeEEEEccCCCcc-----CCcHHHHHHHHHHHHHHhCCeEEEEcCCcCC---CCc
Q 009537 81 TAVAVEVCEELFTPIPPHADLALNGVEVFMNASGSHHQ-----LRKLDYRIRAFISATHSRGGVYMYSNQQGCD---GGR 152 (532)
Q Consensus 81 ~~iG~eICeDlw~P~~~~~~lal~GaeIIlnpSaS~~~-----~~k~~~r~~li~~~a~~~g~~yvyaN~~G~d---g~~ 152 (532)
+|||+.||+|+||| +..+.++++|||||++|++++.. ......|..+++++|.+|++++++||++|.+ +++
T Consensus 143 ~~ig~~IC~D~~fp-e~~r~~a~~ga~lil~ps~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~ 221 (279)
T TIGR03381 143 GRIGVGICWDQWFP-ETARAMALMGAEVLFYPTAIGSEPHDPDLDSRDHWQRVMQGHAAANLVPVVAANRIGTEVGDGGE 221 (279)
T ss_pred ceEEEEEEcCCcCh-HHHHHHHHcCCCEEEecCccCCCCcccccccHHHHHHHHHHHHHhCCCeEEEEecccccCCCCCc
Confidence 99999999999999 67899999999999999997542 2334567788899999999999999999987 356
Q ss_pred eeeeccEEEE-eCCcEEEecCCCCcCceeEEEEEEecchhhhhhccCCc
Q 009537 153 LYFDGCSCVV-VNGDMIAQGSQFSLRDVEVVVAQVDLDAVAGFRGSISS 200 (532)
Q Consensus 153 l~fdG~S~I~-~nG~ilaq~~~f~~~d~evi~a~VDl~~vr~~R~~~~s 200 (532)
..|.|.|+|+ |+|+++++++.+++ ++++++||++.++..|...+.
T Consensus 222 ~~~~G~S~i~~p~G~il~~~~~~~e---~~~~~~id~~~~~~~r~~~~~ 267 (279)
T TIGR03381 222 QTFYGSSFIADHTGELVAEAGRSEE---AVLVATFDLDEIAKQRAAWGF 267 (279)
T ss_pred ceEeeeEEEECCCCcEeecCCCCCC---ceEEEEeCHHHHHHHHhcCch
Confidence 7899999999 99999999988753 789999999999998866443
No 7
>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.96 E-value=1.5e-28 Score=246.93 Aligned_cols=170 Identities=21% Similarity=0.299 Sum_probs=148.1
Q ss_pred Ceee-CCeeEEEEEEEeCCeEEEEEecccCCCCCCCcccccccccCCCCcccccccchhhhhhccCceeeccceeEEeCC
Q 009537 2 PVIK-GSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFLLPHEISEALCQKSVPFGYGFIQFLD 80 (532)
Q Consensus 2 Pv~~-~g~~YN~avvi~~GkIl~i~~K~hL~~~g~~~E~R~Ftpg~~~~~~e~~~lp~~i~~~~~q~~vPfGd~v~~~~~ 80 (532)
|.+. ++++||+++++.+|++++.|+|+|||..+.|.|.+||++|+.. .+|++++
T Consensus 81 ~~~~~~~~~yNt~~vi~~G~i~~~y~K~~lp~~~~~~e~~~~~~G~~~-------------------------~vf~~~~ 135 (269)
T cd07586 81 VEEGRDGRFYNSAAYLEDGRVVHVHRKVYLPTYGLFEEGRYFAPGSHL-------------------------RAFDTRF 135 (269)
T ss_pred eEEcCCCcEEEEEEEecCCEEEEEEEeEeCCCCCccceeeeecCCCcc-------------------------eEEEeCC
Confidence 4444 4789999999999999999999999988888999999999865 4899999
Q ss_pred ccEEEeeecccCCCchHHHHHHhCCCeEEEEccCCCccC-----CcHHHHHHHHHHHHHHhCCeEEEEcCCcCCCCceee
Q 009537 81 TAVAVEVCEELFTPIPPHADLALNGVEVFMNASGSHHQL-----RKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYF 155 (532)
Q Consensus 81 ~~iG~eICeDlw~P~~~~~~lal~GaeIIlnpSaS~~~~-----~k~~~r~~li~~~a~~~g~~yvyaN~~G~dg~~l~f 155 (532)
+|||+.||+|+|+| ++.+.++++|||||++||++++.. ++...|..+.+.+|.+|++++++||++|.+ ++..|
T Consensus 136 ~~ig~~IC~D~~fp-~~~~~~~~~ga~lil~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~-~~~~~ 213 (269)
T cd07586 136 GRAGVLICEDAWHP-SLPYLLALDGADVIFIPANSPARGVGGDFDNEENWETLLKFYAMMNGVYVVFANRVGVE-DGVYF 213 (269)
T ss_pred eEEEEEEEeccCCc-HHHHHHHHCCCCEEEEeCCCccccCccccchhHHHHHHHHHHHHHhCCeEEEEeeecCc-CCceE
Confidence 99999999999999 677889999999999999998743 234567789999999999999999999998 45667
Q ss_pred eccEEEE-eCCcEEEecCCCCcCceeEEEEEEecchhhhhhccCCch
Q 009537 156 DGCSCVV-VNGDMIAQGSQFSLRDVEVVVAQVDLDAVAGFRGSISSF 201 (532)
Q Consensus 156 dG~S~I~-~nG~ilaq~~~f~~~d~evi~a~VDl~~vr~~R~~~~s~ 201 (532)
.|+|+|+ |+|+++++.+.|++ ++++++||++.++..|...+.+
T Consensus 214 ~G~S~ii~p~G~il~~~~~~~~---~~~~~~id~~~~~~~r~~~~~~ 257 (269)
T cd07586 214 WGGSRVVDPDGEVVAEAPLFEE---DLLVAELDRSAIRRARFFSPTF 257 (269)
T ss_pred eCCcEEECCCCCEEEecCCccc---cEEEEEecHHHHHHHHhhCccc
Confidence 8999999 99999999988753 6899999999999888765443
No 8
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=99.96 E-value=1.4e-28 Score=259.01 Aligned_cols=165 Identities=18% Similarity=0.190 Sum_probs=143.0
Q ss_pred CCeeEEEEEEEe-CCeEEEEEecccCCCCCCCcccccccccCCCCcccccccchhhhhhccCceeeccceeEEeCCccEE
Q 009537 6 GSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFLLPHEISEALCQKSVPFGYGFIQFLDTAVA 84 (532)
Q Consensus 6 ~g~~YN~avvi~-~GkIl~i~~K~hL~~~g~~~E~R~Ftpg~~~~~~e~~~lp~~i~~~~~q~~vPfGd~v~~~~~~~iG 84 (532)
++++||+++++. +|+|++.|+|+||++.+.|.|++||.+|+... .||+++++|||
T Consensus 166 ~~~~yNta~vi~~~G~ilg~yrK~hL~~~~~~~E~~~f~~G~~~~------------------------~vf~t~~griG 221 (363)
T cd07587 166 GDTIWNTAVVISNSGNVLGKSRKNHIPRVGDFNESTYYMEGNTGH------------------------PVFETQFGKIA 221 (363)
T ss_pred CCcEEEEEEEECCCCCEEeeeeeEecCCCCCccceeEEecCCCCC------------------------ceEEcCCceEE
Confidence 368999999998 79999999999999888889999999997531 48999999999
Q ss_pred EeeecccCCCchHHHHHHhCCCeEEEEccCCCccCCcHHHHHHHHHHHHHHhCCeEEEEcCCcCCC--------------
Q 009537 85 VEVCEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDG-------------- 150 (532)
Q Consensus 85 ~eICeDlw~P~~~~~~lal~GaeIIlnpSaS~~~~~k~~~r~~li~~~a~~~g~~yvyaN~~G~dg-------------- 150 (532)
+.||||+||| +..+.|+++|||||++|++|+...++ ..|..+++++|.+|+++++++|++|.+.
T Consensus 222 ~~ICyD~~fP-e~~r~la~~GAdiil~Psa~~~~~~~-~~w~~~~rarAieN~~fVv~~NrvG~e~~~~~~~~~~g~~~~ 299 (363)
T cd07587 222 VNICYGRHHP-LNWLMYGLNGAEIVFNPSATVGALSE-PMWPIEARNAAIANSYFTVGINRVGTEVFPNEFTSGDGKPAH 299 (363)
T ss_pred EEEecccCCc-HHHHHHHHcCCcEEEECCCcCCCCch-HHHHHHHHHHHHhcCcEEEEeccccccccccccccccccccc
Confidence 9999999999 78899999999999999999876544 3566889999999999999999999651
Q ss_pred -CceeeeccEEEE-eCCcEEEecCCCCcCceeEEEEEEecchhhhhhccCC
Q 009537 151 -GRLYFDGCSCVV-VNGDMIAQGSQFSLRDVEVVVAQVDLDAVAGFRGSIS 199 (532)
Q Consensus 151 -~~l~fdG~S~I~-~nG~ilaq~~~f~~~d~evi~a~VDl~~vr~~R~~~~ 199 (532)
+...|.|+|+|+ |+|+++++++.+. +++++++||++.++..|...+
T Consensus 300 ~~~~~f~G~S~Ii~P~G~il~~~~~~~---E~ll~adiDl~~i~~~R~~~~ 347 (363)
T cd07587 300 KDFGHFYGSSYVAAPDGSRTPGLSRTR---DGLLVAELDLNLCRQVKDKWG 347 (363)
T ss_pred cccccccceeEEECCCCCCccCCCCCC---CcEEEEEecHHHHHHHHhcCC
Confidence 114688999999 9999999887554 379999999999998887643
No 9
>cd07576 R-amidase_like Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl
Probab=99.96 E-value=4.3e-28 Score=241.04 Aligned_cols=164 Identities=20% Similarity=0.221 Sum_probs=144.6
Q ss_pred CCeeeCCeeEEEEEEEe-CCeEEEEEecccCCCCCCCcccccccccCCCCcccccccchhhhhhccCceeeccceeEEeC
Q 009537 1 MPVIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFLLPHEISEALCQKSVPFGYGFIQFL 79 (532)
Q Consensus 1 mPv~~~g~~YN~avvi~-~GkIl~i~~K~hL~~~g~~~E~R~Ftpg~~~~~~e~~~lp~~i~~~~~q~~vPfGd~v~~~~ 79 (532)
+|+..++++||+++++. +|+|++.|+|+||++ +.|.+||++|+.. .+|+++
T Consensus 82 ~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l~~---~~E~~~~~~G~~~-------------------------~v~~~~ 133 (254)
T cd07576 82 YPERAGGAVYNAAVLIDEDGTVLANYRKTHLFG---DSERAAFTPGDRF-------------------------PVVELR 133 (254)
T ss_pred ccccCCCceEEEEEEECCCCCEeeEEEeeccCC---cchhhhccCCCCc-------------------------eEEEEC
Confidence 35667789999999996 799999999999985 3689999999764 489999
Q ss_pred CccEEEeeecccCCCchHHHHHHhCCCeEEEEccCCCccCCcHHHHHHHHHHHHHHhCCeEEEEcCCcCCCCceeeeccE
Q 009537 80 DTAVAVEVCEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCS 159 (532)
Q Consensus 80 ~~~iG~eICeDlw~P~~~~~~lal~GaeIIlnpSaS~~~~~k~~~r~~li~~~a~~~g~~yvyaN~~G~dg~~l~fdG~S 159 (532)
++|||+.||+|+|+| ++.+.++++|||||++|++++...+ ..+..+++.+|.+|++++++||++|.+ ++..|.|+|
T Consensus 134 ~~kig~~IC~D~~fp-e~~~~~~~~gadii~~p~~~~~~~~--~~~~~~~~~rA~en~~~vv~an~~G~~-~~~~~~G~S 209 (254)
T cd07576 134 GLRVGLLICYDVEFP-ELVRALALAGADLVLVPTALMEPYG--FVARTLVPARAFENQIFVAYANRCGAE-DGLTYVGLS 209 (254)
T ss_pred CeEEEEEEeecCCCC-HHHHHHHHCCCCEEEECCccCCCcc--hhhhhhhHHHHHhCCCEEEEEcccCCC-CCceeeeee
Confidence 999999999999999 7899999999999999999876555 456778999999999999999999988 566799999
Q ss_pred EEE-eCCcEEEecCCCCcCceeEEEEEEecchhhhhhccCCc
Q 009537 160 CVV-VNGDMIAQGSQFSLRDVEVVVAQVDLDAVAGFRGSISS 200 (532)
Q Consensus 160 ~I~-~nG~ilaq~~~f~~~d~evi~a~VDl~~vr~~R~~~~s 200 (532)
+|+ |+|+++++++.+ +++++++||++.++..|.+.+.
T Consensus 210 ~i~~p~G~il~~~~~~----e~~~~~~id~~~~~~~R~~~~~ 247 (254)
T cd07576 210 SIAGPDGTVLARAGRG----EALLVADLDPAALAAARRENPY 247 (254)
T ss_pred EEECCCCCEeEecCCC----CeEEEEEcCHHHHHhhhhcCch
Confidence 999 999999999875 3689999999999999876444
No 10
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=99.95 E-value=1.3e-27 Score=242.61 Aligned_cols=164 Identities=22% Similarity=0.231 Sum_probs=142.8
Q ss_pred CCeeEEEEEEEe-CCeEEEEEecccCCCCCCCcccccccccCCCCcccccccchhhhhhccCceeeccceeEEeCCccEE
Q 009537 6 GSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFLLPHEISEALCQKSVPFGYGFIQFLDTAVA 84 (532)
Q Consensus 6 ~g~~YN~avvi~-~GkIl~i~~K~hL~~~g~~~E~R~Ftpg~~~~~~e~~~lp~~i~~~~~q~~vPfGd~v~~~~~~~iG 84 (532)
++++||+++++. +|++++.|+|+||++++.|.|.+||++|+... .+|+++++|||
T Consensus 103 ~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~~~~e~~~f~~G~~~~------------------------~~f~~~~~~iG 158 (287)
T cd07568 103 GGTLYNTAAVIDADGTYLGKYRKNHIPHVGGFWEKFYFRPGNLGY------------------------PVFDTAFGKIG 158 (287)
T ss_pred CCcEEEEEEEECCCCcEeeEEeeeecCCCCccceeeeecCCCCCC------------------------ceEEcCCceEE
Confidence 468999999998 89999999999999988889999999997421 48899999999
Q ss_pred EeeecccCCCchHHHHHHhCCCeEEEEccCCCccCCcHHHHHHHHHHHHHHhCCeEEEEcCCcCCCC--ceeeeccEEEE
Q 009537 85 VEVCEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGG--RLYFDGCSCVV 162 (532)
Q Consensus 85 ~eICeDlw~P~~~~~~lal~GaeIIlnpSaS~~~~~k~~~r~~li~~~a~~~g~~yvyaN~~G~dg~--~l~fdG~S~I~ 162 (532)
+.||||+||| +..+.++++|||||++||+++...++ ..|..+.+++|.+|+++++++|++|.++. ...|.|.|+|+
T Consensus 159 ~~ICyD~~fp-e~~r~la~~Ga~li~~ps~~~~~~~~-~~~~~~~~~rA~en~~~vv~~N~~G~~~~~~~~~~~G~S~ii 236 (287)
T cd07568 159 VYICYDRHFP-EGWRALGLNGAEIVFNPSATVAGLSE-YLWKLEQPAAAVANGYFVGAINRVGTEAPWNIGEFYGSSYFV 236 (287)
T ss_pred EEEEecccCc-hHHHHHHHCCCeEEEECCcCCCCCch-hhhHHHHHHHHHHCCcEEEEeccccccCCCccceEeceeEEE
Confidence 9999999999 68899999999999999999865543 34555789999999999999999998743 25789999999
Q ss_pred -eCCcEEEecCCCCcCceeEEEEEEecchhhhhhccC
Q 009537 163 -VNGDMIAQGSQFSLRDVEVVVAQVDLDAVAGFRGSI 198 (532)
Q Consensus 163 -~nG~ilaq~~~f~~~d~evi~a~VDl~~vr~~R~~~ 198 (532)
|+|+++++++.++ .++++++||++.++..|...
T Consensus 237 ~p~G~il~~~~~~~---~~~l~a~id~~~~~~~R~~~ 270 (287)
T cd07568 237 DPRGQFVASASRDK---DELLVAELDLDLIREVRDTW 270 (287)
T ss_pred CCCceEEEecCCCC---CeEEEEEecHHHHHHHHhhC
Confidence 9999999998775 37899999999999888653
No 11
>PLN00202 beta-ureidopropionase
Probab=99.95 E-value=1e-27 Score=255.49 Aligned_cols=167 Identities=17% Similarity=0.186 Sum_probs=144.5
Q ss_pred CCeeEEEEEEEe-CCeEEEEEecccCCCCCCCcccccccccCCCCcccccccchhhhhhccCceeeccceeEEeCCccEE
Q 009537 6 GSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFLLPHEISEALCQKSVPFGYGFIQFLDTAVA 84 (532)
Q Consensus 6 ~g~~YN~avvi~-~GkIl~i~~K~hL~~~g~~~E~R~Ftpg~~~~~~e~~~lp~~i~~~~~q~~vPfGd~v~~~~~~~iG 84 (532)
++.+||+++++. +|+|++.|+|+||+..|.|.|++||++|+... .+|++.++|||
T Consensus 187 ~~~~yNSa~vI~~~G~iig~YrKiHL~~~g~~~E~~~f~~G~~g~------------------------~vf~t~~gkiG 242 (405)
T PLN00202 187 GETLWNTAVVIGNNGNIIGKHRKNHIPRVGDFNESTYYMEGNTGH------------------------PVFETAFGKIA 242 (405)
T ss_pred CCcEEEEEEEECCCCcEEEEEecccCCCCCCccccceeecCCCCc------------------------eEEEeCCCeEE
Confidence 356999999996 79999999999999989899999999997531 48999999999
Q ss_pred EeeecccCCCchHHHHHHhCCCeEEEEccCCCccCCcHHHHHHHHHHHHHHhCCeEEEEcCCcCCC--------------
Q 009537 85 VEVCEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDG-------------- 150 (532)
Q Consensus 85 ~eICeDlw~P~~~~~~lal~GaeIIlnpSaS~~~~~k~~~r~~li~~~a~~~g~~yvyaN~~G~dg-------------- 150 (532)
+.||||+||| +..+.++++|||||++||+|+...++ ..|..+++++|.+|+++++++|++|.+.
T Consensus 243 v~ICYD~~FP-E~~r~la~~GAdiIl~Psa~~~~~~~-~~w~~~~raRAiEN~~fvv~aNrvG~~~~~~~~~~~~g~~~~ 320 (405)
T PLN00202 243 VNICYGRHHP-LNWLAFGLNGAEIVFNPSATVGDLSE-PMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQH 320 (405)
T ss_pred EEEccccccH-HHHHHHHHCCCcEEEECCCCCCccCH-HHHHHHHHHHHHhcCCEEEEeccccccccccccccccccccc
Confidence 9999999999 78999999999999999999876554 3566889999999999999999999752
Q ss_pred -CceeeeccEEEE-eCCcEEEecCCCCcCceeEEEEEEecchhhhhhccCCch
Q 009537 151 -GRLYFDGCSCVV-VNGDMIAQGSQFSLRDVEVVVAQVDLDAVAGFRGSISSF 201 (532)
Q Consensus 151 -~~l~fdG~S~I~-~nG~ilaq~~~f~~~d~evi~a~VDl~~vr~~R~~~~s~ 201 (532)
+...|.|+|+|+ |+|++++++..+. +++++++||++.++..|...+.+
T Consensus 321 ~~~~~f~G~S~Iv~P~G~vla~~~~~~---E~llvadIDl~~v~~~R~~~~~~ 370 (405)
T PLN00202 321 KDFGHFYGSSHFSAPDASCTPSLSRYK---DGLLISDMDLNLCRQLKDKWGFR 370 (405)
T ss_pred cccccccceeEEEcCCCCEeccCCCCC---CcEEEEEeCHHHHHHHHHhCCcc
Confidence 114689999999 9999999987554 36899999999999998775443
No 12
>PRK10438 C-N hydrolase family amidase; Provisional
Probab=99.95 E-value=1.9e-27 Score=238.70 Aligned_cols=162 Identities=15% Similarity=0.148 Sum_probs=138.1
Q ss_pred eCCeeEEEEEEEeCCeEEEEEecccCCCCCCCcccccccccCCCCcccccccchhhhhhccCceeeccceeEEeCCccEE
Q 009537 5 KGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFLLPHEISEALCQKSVPFGYGFIQFLDTAVA 84 (532)
Q Consensus 5 ~~g~~YN~avvi~~GkIl~i~~K~hL~~~g~~~E~R~Ftpg~~~~~~e~~~lp~~i~~~~~q~~vPfGd~v~~~~~~~iG 84 (532)
.++++||+++++.+++.++.|+|+||+. .+.|.+||+||+.. .+|+++++|||
T Consensus 85 ~~~~~~Nsa~vi~~~G~~~~y~K~hL~~--~~~E~~~f~~G~~~-------------------------~v~~~~~~~iG 137 (256)
T PRK10438 85 TESGAVNRFLLVEPGGTVHFYDKRHLFR--MADEHLHYKAGNAR-------------------------VIVEWRGWRIL 137 (256)
T ss_pred cCCCeEEEEEEEcCCCCEEEEeeeecCC--CCCccceecCCCCc-------------------------eEEEECCEEEE
Confidence 4567899999998544478999999964 35799999999865 48999999999
Q ss_pred EeeecccCCCchHHHHHHhCCCeEEEEccCCCccCCcHHHHHHHHHHHHHHhCCeEEEEcCCcCCCCceeeeccEEEE-e
Q 009537 85 VEVCEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVV-V 163 (532)
Q Consensus 85 ~eICeDlw~P~~~~~~lal~GaeIIlnpSaS~~~~~k~~~r~~li~~~a~~~g~~yvyaN~~G~dg~~l~fdG~S~I~-~ 163 (532)
+.||||+||| +..+.+ +|||+|++|++|+... ...|..++++||.+|++++++||++|.+++...|.|.|+|+ |
T Consensus 138 ~~ICyD~~fP-e~~r~l--~gad~i~~~s~~~~~~--~~~~~~~~~aRA~En~~~vv~~n~~G~~~~~~~~~G~S~ivdP 212 (256)
T PRK10438 138 PLVCYDLRFP-VWSRNR--NDYDLALYVANWPAPR--SLHWQTLLTARAIENQAYVAGCNRVGSDGNGHHYRGDSRIINP 212 (256)
T ss_pred EEEEeecCCH-HHHHhh--cCCCEEEEecCCCCCc--hHHHHHHHHHHHHhcCcEEEEecccccCCCCCEEcCceEEECC
Confidence 9999999999 666664 8999999999998653 34577888999999999999999999886567899999999 9
Q ss_pred CCcEEEecCCCCcCceeEEEEEEecchhhhhhccCCch
Q 009537 164 NGDMIAQGSQFSLRDVEVVVAQVDLDAVAGFRGSISSF 201 (532)
Q Consensus 164 nG~ilaq~~~f~~~d~evi~a~VDl~~vr~~R~~~~s~ 201 (532)
+|+++++++.++ .++++++||++.++..|...+.+
T Consensus 213 ~G~vl~~~~~~~---e~~i~~~idl~~~~~~R~~~~~l 247 (256)
T PRK10438 213 QGEIIATAEPHQ---ATRIDAELSLEALQEYREKFPAW 247 (256)
T ss_pred CCcEEEEcCCCC---cEEEEEEECHHHHHHHHHhCCcc
Confidence 999999998764 37899999999999998765543
No 13
>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.95 E-value=5.6e-27 Score=235.73 Aligned_cols=164 Identities=22% Similarity=0.166 Sum_probs=141.3
Q ss_pred CeeeCCeeEEEEEEEeCCeEEEEEecccCCCCCCCcccccccccCCCCcccccccchhhhhhccCceeeccceeEEeCCc
Q 009537 2 PVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFLLPHEISEALCQKSVPFGYGFIQFLDT 81 (532)
Q Consensus 2 Pv~~~g~~YN~avvi~~GkIl~i~~K~hL~~~g~~~E~R~Ftpg~~~~~~e~~~lp~~i~~~~~q~~vPfGd~v~~~~~~ 81 (532)
|...++++||+++++.++++++.|+|+||+. .|.+||++|+... .+|+++++
T Consensus 86 ~~~~~~~~yNs~~vi~~~g~~~~y~K~~l~~----~e~~~f~~G~~~~------------------------~v~~~~~~ 137 (268)
T cd07580 86 AERDGDRLYNSAVLVGPDGVIGTYRKAHLWN----EEKLLFEPGDLGL------------------------PVFDTPFG 137 (268)
T ss_pred ccccCCceEEEEEEECCCCcEEEEEEecCCc----hhcceecCCCCCC------------------------ceEEcCCC
Confidence 4556778999999998666789999999985 5999999998621 48899999
Q ss_pred cEEEeeecccCCCchHHHHHHhCCCeEEEEccCCCccCCcH----HHHHHHHHHHHHHhCCeEEEEcCCcCCCCceeeec
Q 009537 82 AVAVEVCEELFTPIPPHADLALNGVEVFMNASGSHHQLRKL----DYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDG 157 (532)
Q Consensus 82 ~iG~eICeDlw~P~~~~~~lal~GaeIIlnpSaS~~~~~k~----~~r~~li~~~a~~~g~~yvyaN~~G~dg~~l~fdG 157 (532)
|+|+.||+|+||| ++.+.++++|||||++|++|++..++. ..|..+.+++|.+|++++++||++|.+ ++..|.|
T Consensus 138 ~ig~~IC~D~~fp-e~~r~~~~~ga~li~~ps~~~~~~~~~~~~~~~~~~~~~arA~en~~~vv~~n~~G~~-~~~~~~G 215 (268)
T cd07580 138 RIGVAICYDGWFP-ETFRLLALQGADIVCVPTNWVPMPRPPEGGPPMANILAMAAAHSNGLFIACADRVGTE-RGQPFIG 215 (268)
T ss_pred cEEEEEECcccch-HHHHHHHHcCCCEEEEcCcccccCCcccccCcHHHHhhHHHHhhCCcEEEEEeeeeec-cCceEee
Confidence 9999999999999 678899999999999999998765542 345667899999999999999999988 4578999
Q ss_pred cEEEE-eCCcEEEecCCCCcCceeEEEEEEecchhhhhhcc
Q 009537 158 CSCVV-VNGDMIAQGSQFSLRDVEVVVAQVDLDAVAGFRGS 197 (532)
Q Consensus 158 ~S~I~-~nG~ilaq~~~f~~~d~evi~a~VDl~~vr~~R~~ 197 (532)
+|+|+ |+|+++++++.+.. +++++++||++.++..|..
T Consensus 216 ~S~ii~p~G~~~~~~~~~~~--~~~~~~~id~~~~~~~r~~ 254 (268)
T cd07580 216 QSLIVGPDGWPLAGPASGDE--EEILLADIDLTAARRKRIW 254 (268)
T ss_pred eeEEECCCCCeeeecCCCCC--CeEEEEEecHHHHHHhhcC
Confidence 99999 99999999876643 4799999999999999865
No 14
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t
Probab=99.95 E-value=6.5e-27 Score=234.00 Aligned_cols=167 Identities=19% Similarity=0.187 Sum_probs=144.6
Q ss_pred CeeeC--CeeEEEEEEEe-CCeEEEEEecccCCC-----CCCCcccccccccCCCCcccccccchhhhhhccCceeeccc
Q 009537 2 PVIKG--SERYNCQVLCL-NRKIIMIRPKLWLAN-----DGNYRELRWFTAWKQKDQLEDFLLPHEISEALCQKSVPFGY 73 (532)
Q Consensus 2 Pv~~~--g~~YN~avvi~-~GkIl~i~~K~hL~~-----~g~~~E~R~Ftpg~~~~~~e~~~lp~~i~~~~~q~~vPfGd 73 (532)
|.+.+ +++||+++++. +|+|++.|+|+||++ ...|+|.+||++|+..
T Consensus 84 ~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l~~~~~p~~~~~~e~~~~~~G~~~------------------------- 138 (265)
T cd07572 84 PERDDDDGKVYNTSLVFDPDGELVARYRKIHLFDVDVPGGISYRESDTLTPGDEV------------------------- 138 (265)
T ss_pred ccccCCCCcEEEEEEEECCCCeEEeEEeeEEeecccCCCCcccccccccCCCCcc-------------------------
Confidence 44444 78999999997 899999999999953 2236899999999864
Q ss_pred eeEEeCCccEEEeeecccCCCchHHHHHHhCCCeEEEEccCCCccCCcHHHHHHHHHHHHHHhCCeEEEEcCCcCCCCce
Q 009537 74 GFIQFLDTAVAVEVCEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRL 153 (532)
Q Consensus 74 ~v~~~~~~~iG~eICeDlw~P~~~~~~lal~GaeIIlnpSaS~~~~~k~~~r~~li~~~a~~~g~~yvyaN~~G~dg~~l 153 (532)
.+|+++++|+|+.||+|+|+| +..+.++++|||||++|++++...++. .|..+.+.+|.+|+++++++|++|.+++..
T Consensus 139 ~~~~~~~~~ig~~IC~D~~~p-e~~r~~~~~gadli~~p~~~~~~~~~~-~~~~~~~~rA~e~~~~vv~~n~~G~~~~~~ 216 (265)
T cd07572 139 VVVDTPFGKIGLGICYDLRFP-ELARALARQGADILTVPAAFTMTTGPA-HWELLLRARAIENQCYVVAAAQAGDHEAGR 216 (265)
T ss_pred eEEecCCceEEEEEEeccCcH-HHHHHHHHCCCCEEEECCCCCCCcchH-HHHHHHHHHHHhcCCEEEEEcccccCCCCC
Confidence 489999999999999999999 689999999999999999998776654 466778999999999999999999886677
Q ss_pred eeeccEEEE-eCCcEEEecCCCCcCceeEEEEEEecchhhhhhccCC
Q 009537 154 YFDGCSCVV-VNGDMIAQGSQFSLRDVEVVVAQVDLDAVAGFRGSIS 199 (532)
Q Consensus 154 ~fdG~S~I~-~nG~ilaq~~~f~~~d~evi~a~VDl~~vr~~R~~~~ 199 (532)
.|.|.|+|+ |+|+++++++.+ + ++++++||++.++..|.+.+
T Consensus 217 ~~~G~S~i~~p~G~il~~~~~~-~---~~~~~~id~~~~~~~r~~~~ 259 (265)
T cd07572 217 ETYGHSMIVDPWGEVLAEAGEG-E---GVVVAEIDLDRLEEVRRQIP 259 (265)
T ss_pred eecceeEEECCCcHHHhhcCCC-C---cEEEEEeCHHHHHHHHHhCc
Confidence 899999999 999999999876 2 68999999999988886643
No 15
>COG0388 Predicted amidohydrolase [General function prediction only]
Probab=99.94 E-value=1.4e-26 Score=233.75 Aligned_cols=162 Identities=24% Similarity=0.315 Sum_probs=142.1
Q ss_pred eeEEEEEEE-eCCeEEEEEecccCCCCCCCcccccccccCCCCcccccccchhhhhhccCceeeccceeEEeCCccEEEe
Q 009537 8 ERYNCQVLC-LNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFLLPHEISEALCQKSVPFGYGFIQFLDTAVAVE 86 (532)
Q Consensus 8 ~~YN~avvi-~~GkIl~i~~K~hL~~~g~~~E~R~Ftpg~~~~~~e~~~lp~~i~~~~~q~~vPfGd~v~~~~~~~iG~e 86 (532)
..||+++++ .+|++++.|+|+||+++ .|+|+++|+||+... .+|+++++++|+.
T Consensus 93 ~~~~~~~~i~~~G~ii~~y~K~hl~~~-~~~e~~~~~~G~~~~------------------------~v~~~~~~kig~~ 147 (274)
T COG0388 93 KLYNNAALIDPDGEILGKYRKLHLFDA-FYEERRFFTPGDEGV------------------------VVFETDGGKIGLL 147 (274)
T ss_pred cceeeEEEEcCCCcEEeEEeeecCCCC-ccchhhhccCCCccc------------------------eeEEeCCceEEEE
Confidence 566666665 69999999999999988 788999999998751 3899999999999
Q ss_pred eecccCCCchHHHHH-HhCCCeEEEEccCCCccCCcHHHHHHHHHHHHHHhCCeEEEEcCCcCCCCceeeeccEEEE-eC
Q 009537 87 VCEELFTPIPPHADL-ALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVV-VN 164 (532)
Q Consensus 87 ICeDlw~P~~~~~~l-al~GaeIIlnpSaS~~~~~k~~~r~~li~~~a~~~g~~yvyaN~~G~dg~~l~fdG~S~I~-~n 164 (532)
||+|+||| +..+.+ ++.|||+|++|++++...+ ...|..+++++|.+|+++++++|+.|.+.+...|+|+|+|+ |+
T Consensus 148 IC~D~~fP-e~~~~~~a~~Gaeii~~p~a~~~~~~-~~~w~~l~~arA~en~~~vv~~n~~g~~~~~~~~~G~S~i~~p~ 225 (274)
T COG0388 148 ICYDLRFP-ELARRLLALGGAELLLVPAAWPAERG-LDHWEVLLRARAIENQVYVLAANRAGFDGAGLEFCGHSAIIDPD 225 (274)
T ss_pred EEeeccCH-HHHHHHHHhcCCeEEEEcCCCCCccc-HHHHHHHHHHHhhhcCceEEEecccCCCCCccEEecceEEECCC
Confidence 99999999 555555 9999999999999998877 67888899999999999999999999984448899999999 99
Q ss_pred CcEEEecCCCCcCceeEEEEEEecchhhhhhccCC
Q 009537 165 GDMIAQGSQFSLRDVEVVVAQVDLDAVAGFRGSIS 199 (532)
Q Consensus 165 G~ilaq~~~f~~~d~evi~a~VDl~~vr~~R~~~~ 199 (532)
|+++++...+. ++++++++|++.++..|....
T Consensus 226 G~v~~~~~~~~---e~~~~~~id~~~~~~~r~~~~ 257 (274)
T COG0388 226 GEVLAEAGEEE---EGVLLADIDLAELAEVRRKIP 257 (274)
T ss_pred ccEEeecCCCC---CcEEEEEECHHHHHHHHhhCc
Confidence 99999998873 479999999999999886644
No 16
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases). CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.
Probab=99.94 E-value=1.9e-26 Score=233.32 Aligned_cols=166 Identities=22% Similarity=0.309 Sum_probs=144.5
Q ss_pred CCeeEEEEEEEe-CCeEEEEEecccCCCCCCCcccccccccCCCCcccccccchhhhhhccCceeeccceeEEeCCccEE
Q 009537 6 GSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFLLPHEISEALCQKSVPFGYGFIQFLDTAVA 84 (532)
Q Consensus 6 ~g~~YN~avvi~-~GkIl~i~~K~hL~~~g~~~E~R~Ftpg~~~~~~e~~~lp~~i~~~~~q~~vPfGd~v~~~~~~~iG 84 (532)
++++||+++++. +|+|++.|+|+|||..+.+.|.+||++|.... .+|+++++++|
T Consensus 92 ~~~~yNs~~v~~~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~~~------------------------~~~~~~~~~ig 147 (284)
T cd07573 92 NGLYYNSAVVIDADGSLLGVYRKMHIPDDPGYYEKFYFTPGDTGF------------------------KVFDTRYGRIG 147 (284)
T ss_pred CCcEEEEEEEECCCCCEEeEEeeeccCCCCcccccceecCCCCCC------------------------ceEecCCceEE
Confidence 358999999997 79999999999999877788999999997321 48999999999
Q ss_pred EeeecccCCCchHHHHHHhCCCeEEEEccCCCcc-------CCcHHHHHHHHHHHHHHhCCeEEEEcCCcCCC---Ccee
Q 009537 85 VEVCEELFTPIPPHADLALNGVEVFMNASGSHHQ-------LRKLDYRIRAFISATHSRGGVYMYSNQQGCDG---GRLY 154 (532)
Q Consensus 85 ~eICeDlw~P~~~~~~lal~GaeIIlnpSaS~~~-------~~k~~~r~~li~~~a~~~g~~yvyaN~~G~dg---~~l~ 154 (532)
+.||+|+|+| ++.+.++++|||||++|+++++. ..+...|..+.+++|.+|++++++||++|.++ .+..
T Consensus 148 ~~IC~D~~fp-e~~r~~~~~gadlil~ps~~~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~~~ 226 (284)
T cd07573 148 VLICWDQWFP-EAARLMALQGAEILFYPTAIGSEPQEPPEGLDQRDAWQRVQRGHAIANGVPVAAVNRVGVEGDPGSGIT 226 (284)
T ss_pred EEEeccccch-HHHHHHHHCCCCEEEecCcccCCCCCccccCCchHHHHHHHHHHHHHcCceEEEeccccccCCCCCCce
Confidence 9999999999 68899999999999999998653 23456778889999999999999999999874 2688
Q ss_pred eeccEEEE-eCCcEEEecCCCCcCceeEEEEEEecchhhhhhccCC
Q 009537 155 FDGCSCVV-VNGDMIAQGSQFSLRDVEVVVAQVDLDAVAGFRGSIS 199 (532)
Q Consensus 155 fdG~S~I~-~nG~ilaq~~~f~~~d~evi~a~VDl~~vr~~R~~~~ 199 (532)
|+|+|+|+ |+|+++++++.|+ .++++++||++.++..|...+
T Consensus 227 ~~G~S~i~~p~G~i~~~~~~~~---~~v~~a~id~~~~~~~r~~~~ 269 (284)
T cd07573 227 FYGSSFIADPFGEILAQASRDE---EEILVAEFDLDEIEEVRRAWP 269 (284)
T ss_pred eeceeEEECCCCCeeeccCCCC---CcEEEEEecHHHHHHHHhhCh
Confidence 99999999 9999999999875 378999999999999886533
No 17
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.94 E-value=1.9e-26 Score=229.65 Aligned_cols=163 Identities=22% Similarity=0.310 Sum_probs=141.8
Q ss_pred eeeCCeeEEEEEEEe-CCeEEEEEecccCCCCCCCcccccccccCCCCcccccccchhhhhhccCceeeccceeEEeCCc
Q 009537 3 VIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFLLPHEISEALCQKSVPFGYGFIQFLDT 81 (532)
Q Consensus 3 v~~~g~~YN~avvi~-~GkIl~i~~K~hL~~~g~~~E~R~Ftpg~~~~~~e~~~lp~~i~~~~~q~~vPfGd~v~~~~~~ 81 (532)
...++++||+++++. +|++++.|+|+||+++ +.|.+||++|+.. .+|+++++
T Consensus 84 ~~~~~~~yNs~~~i~~~G~i~~~y~K~~l~~~--~~e~~~~~~G~~~-------------------------~v~~~~~~ 136 (253)
T cd07583 84 EKEGGKLYNTAYVIDPDGELIATYRKIHLFGL--MGEDKYLTAGDEL-------------------------EVFELDGG 136 (253)
T ss_pred ecCCCcEEEEEEEECCCCcEEEEEeeeeCCCC--cCchhhccCCCCc-------------------------eEEEeCCe
Confidence 345678999999998 7999999999999875 4799999999864 48999999
Q ss_pred cEEEeeecccCCCchHHHHHHhCCCeEEEEccCCCccCCcHHHHHHHHHHHHHHhCCeEEEEcCCcCCCCceeeeccEEE
Q 009537 82 AVAVEVCEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCV 161 (532)
Q Consensus 82 ~iG~eICeDlw~P~~~~~~lal~GaeIIlnpSaS~~~~~k~~~r~~li~~~a~~~g~~yvyaN~~G~dg~~l~fdG~S~I 161 (532)
|||+.||+|+|+| +..+.++++|||||++||+|+.. ....|..+++.+|.+|+++++++|.+|.+ ++..|.|.|+|
T Consensus 137 rig~~IC~D~~~p-e~~r~~~~~ga~ll~~ps~~~~~--~~~~~~~~~~~rA~en~~~vv~~n~~G~~-~~~~~~G~S~i 212 (253)
T cd07583 137 KVGLFICYDLRFP-ELFRKLALEGAEILFVPAEWPAA--RIEHWRTLLRARAIENQAFVVACNRVGTD-GGNEFGGHSMV 212 (253)
T ss_pred EEEEEEEeccccH-HHHHHHHHcCCcEEEECCCCCCC--chHHHHHHHHHHHHHhCCEEEEEcCcccC-CCceecceeEE
Confidence 9999999999999 68999999999999999998763 23556678899999999999999999998 45678899999
Q ss_pred E-eCCcEEEecCCCCcCceeEEEEEEecchhhhhhccCCc
Q 009537 162 V-VNGDMIAQGSQFSLRDVEVVVAQVDLDAVAGFRGSISS 200 (532)
Q Consensus 162 ~-~nG~ilaq~~~f~~~d~evi~a~VDl~~vr~~R~~~~s 200 (532)
+ |+|+++++++. . .++++++||++.++..|...+.
T Consensus 213 i~p~G~il~~~~~-~---~~~~~~~i~l~~~~~~r~~~~~ 248 (253)
T cd07583 213 IDPWGEVLAEAGE-E---EEILTAEIDLEEVAEVRKKIPV 248 (253)
T ss_pred ECCCchhheecCC-C---ceEEEEEecHHHHHHHHHhCCc
Confidence 9 99999999886 2 4799999999999988876443
No 18
>PLN02747 N-carbamolyputrescine amidase
Probab=99.94 E-value=2.5e-26 Score=234.73 Aligned_cols=169 Identities=20% Similarity=0.278 Sum_probs=144.2
Q ss_pred eeeCCeeEEEEEEEe-CCeEEEEEecccCCCCCCCcccccccccCCCCcccccccchhhhhhccCceeeccceeEEeCCc
Q 009537 3 VIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFLLPHEISEALCQKSVPFGYGFIQFLDT 81 (532)
Q Consensus 3 v~~~g~~YN~avvi~-~GkIl~i~~K~hL~~~g~~~E~R~Ftpg~~~~~~e~~~lp~~i~~~~~q~~vPfGd~v~~~~~~ 81 (532)
...++++||+++++. +|+|++.|+|+|||....+.|..||++|+... .+|+++++
T Consensus 94 ~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~~~~e~~~~~~G~~~~------------------------~~~~~~~~ 149 (296)
T PLN02747 94 EEANNAHYNSIAIIDADGTDLGLYRKSHIPDGPGYQEKFYFNPGDTGF------------------------KVFDTKFA 149 (296)
T ss_pred ecCCCceEEEEEEECCCCCCcceEEEEecCCCCCccceeeecCCCCCC------------------------eeEEcCCc
Confidence 445788999999996 89999999999998765678999999996421 48999999
Q ss_pred cEEEeeecccCCCchHHHHHHhCCCeEEEEccCCCcc-----CCcHHHHHHHHHHHHHHhCCeEEEEcCCcCC------C
Q 009537 82 AVAVEVCEELFTPIPPHADLALNGVEVFMNASGSHHQ-----LRKLDYRIRAFISATHSRGGVYMYSNQQGCD------G 150 (532)
Q Consensus 82 ~iG~eICeDlw~P~~~~~~lal~GaeIIlnpSaS~~~-----~~k~~~r~~li~~~a~~~g~~yvyaN~~G~d------g 150 (532)
|+|+.||+|+||| +..+.++++||+||++|++++.. ..+...|..+++++|.+|+++++++|++|.+ |
T Consensus 150 rig~~IC~D~~fp-e~~r~~~~~Ga~lil~ps~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~N~~G~~~~~~~~g 228 (296)
T PLN02747 150 KIGVAICWDQWFP-EAARAMVLQGAEVLLYPTAIGSEPQDPGLDSRDHWKRVMQGHAGANLVPLVASNRIGTEILETEHG 228 (296)
T ss_pred cEEEEEEccccch-HHHHHHHHCCCCEEEEeCccCCCCcccccchHHHHHHHHHHHHHHcCCeEEEEecccccccccccC
Confidence 9999999999999 67999999999999999997542 2345677888999999999999999999963 2
Q ss_pred -CceeeeccEEEE-eCCcEEEecCCCCcCceeEEEEEEecchhhhhhccCC
Q 009537 151 -GRLYFDGCSCVV-VNGDMIAQGSQFSLRDVEVVVAQVDLDAVAGFRGSIS 199 (532)
Q Consensus 151 -~~l~fdG~S~I~-~nG~ilaq~~~f~~~d~evi~a~VDl~~vr~~R~~~~ 199 (532)
.+..|.|.|+|+ |+|+++++++.+. +++++++||++.++..|...+
T Consensus 229 ~~~~~~~G~S~i~~p~G~vl~~~~~~~---e~~~~adid~~~~~~~r~~~~ 276 (296)
T PLN02747 229 PSKITFYGGSFIAGPTGEIVAEADDKA---EAVLVAEFDLDQIKSKRASWG 276 (296)
T ss_pred CcCceEeeeeEEECCCCCEeecCCCCC---CcEEEEEEcHHHHHHHHHhCC
Confidence 257899999999 9999999998764 378999999999998886543
No 19
>PLN02798 nitrilase
Probab=99.94 E-value=3.2e-26 Score=233.11 Aligned_cols=165 Identities=18% Similarity=0.165 Sum_probs=141.7
Q ss_pred eCCeeEEEEEEEe-CCeEEEEEecccC-----CCCCCCcccccccccCCCCcccccccchhhhhhccCceeeccceeEEe
Q 009537 5 KGSERYNCQVLCL-NRKIIMIRPKLWL-----ANDGNYRELRWFTAWKQKDQLEDFLLPHEISEALCQKSVPFGYGFIQF 78 (532)
Q Consensus 5 ~~g~~YN~avvi~-~GkIl~i~~K~hL-----~~~g~~~E~R~Ftpg~~~~~~e~~~lp~~i~~~~~q~~vPfGd~v~~~ 78 (532)
.++++||+++++. +|+|++.|+|+|| |..+.+.|.+||+||+.. .+|++
T Consensus 99 ~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~p~~~~~~e~~~~~~G~~~-------------------------~v~~~ 153 (286)
T PLN02798 99 DDSHLYNTHVLIDDSGEIRSSYRKIHLFDVDVPGGPVLKESSFTAPGKTI-------------------------VAVDS 153 (286)
T ss_pred CCCceEEEEEEECCCCCEEEEEEEEEeccccCCCCCcccccccccCCCee-------------------------eEEec
Confidence 3578999999997 8999999999999 444456799999999754 48899
Q ss_pred CCccEEEeeecccCCCchHHHHHH-hCCCeEEEEccCCCccCCcHHHHHHHHHHHHHHhCCeEEEEcCCcCCCCceeeec
Q 009537 79 LDTAVAVEVCEELFTPIPPHADLA-LNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDG 157 (532)
Q Consensus 79 ~~~~iG~eICeDlw~P~~~~~~la-l~GaeIIlnpSaS~~~~~k~~~r~~li~~~a~~~g~~yvyaN~~G~dg~~l~fdG 157 (532)
+++|||+.||+|+||| +..+.++ ++|||||++|++++...+. ..|..+++++|.+|+++++++|++|.++.+..|.|
T Consensus 154 ~~~k~g~~IC~D~~fp-e~~r~~a~~~Gadlil~ps~~~~~~~~-~~~~~~~~~rAien~~~vv~an~~G~~~~~~~~~G 231 (286)
T PLN02798 154 PVGRLGLTVCYDLRFP-ELYQQLRFEHGAQVLLVPSAFTKPTGE-AHWEVLLRARAIETQCYVIAAAQAGKHNEKRESYG 231 (286)
T ss_pred CCceEEEEEEEcccCh-HHHHHHHHhCCCcEEEECCcCCCCCcH-HHHHHHHHHHHHHhCCEEEEecccCcCCCCceeee
Confidence 9999999999999999 7888998 9999999999998876554 35567889999999999999999998765677889
Q ss_pred cEEEE-eCCcEEEecCC-CCcCceeEEEEEEecchhhhhhccCC
Q 009537 158 CSCVV-VNGDMIAQGSQ-FSLRDVEVVVAQVDLDAVAGFRGSIS 199 (532)
Q Consensus 158 ~S~I~-~nG~ilaq~~~-f~~~d~evi~a~VDl~~vr~~R~~~~ 199 (532)
.|+|+ |+|+++++.+. ++ +++++++||++.++..|.+.+
T Consensus 232 ~S~ii~p~G~il~~~~~~~~---e~~~~a~id~~~~~~~r~~~~ 272 (286)
T PLN02798 232 HALIIDPWGTVVARLPDRLS---TGIAVADIDLSLLDSVRTKMP 272 (286)
T ss_pred eeEEECCCccchhhcCCCCC---CCEEEEEecHHHHHHHHHhCc
Confidence 99999 99999999874 33 379999999999998886643
No 20
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.94 E-value=5.5e-26 Score=226.29 Aligned_cols=167 Identities=20% Similarity=0.141 Sum_probs=144.9
Q ss_pred CeeeC-CeeEEEEEEE-eCCeEEEEEecccCCCCCCCcccccccccCCCCcccccccchhhhhhccCceeeccceeEEeC
Q 009537 2 PVIKG-SERYNCQVLC-LNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFLLPHEISEALCQKSVPFGYGFIQFL 79 (532)
Q Consensus 2 Pv~~~-g~~YN~avvi-~~GkIl~i~~K~hL~~~g~~~E~R~Ftpg~~~~~~e~~~lp~~i~~~~~q~~vPfGd~v~~~~ 79 (532)
|.+.+ +.+||+++++ .+|+|++.|+|+||++...+.|.+||++|+... ..+++++
T Consensus 82 ~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~L~~~~~~~e~~~~~~G~~~~-----------------------~~~~~~~ 138 (255)
T cd07581 82 FEPAGDGRVYNTLVVVGPDGEIIAVYRKIHLYDAFGFRESDTVAPGDELP-----------------------PVVFVVG 138 (255)
T ss_pred eeeCCCCcEEEeEEEECCCCcEEEEEeeeccCCCCCcCcccccCCCCCCC-----------------------ceEEecC
Confidence 44444 3899999999 589999999999998876788999999998631 0377888
Q ss_pred CccEEEeeecccCCCchHHHHHHhCCCeEEEEccCCCccCCcHHHHHHHHHHHHHHhCCeEEEEcCCcCCCCceeeeccE
Q 009537 80 DTAVAVEVCEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCS 159 (532)
Q Consensus 80 ~~~iG~eICeDlw~P~~~~~~lal~GaeIIlnpSaS~~~~~k~~~r~~li~~~a~~~g~~yvyaN~~G~dg~~l~fdG~S 159 (532)
++|+|+.||+|+|+| +..+.++++|||||++|++|+...++.++|..+++.+|.+|++++++||++|. .|.|.|
T Consensus 139 ~~kig~~IC~D~~~p-e~~~~~~~~ga~lil~ps~~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~g~-----~~~G~S 212 (255)
T cd07581 139 GVKVGLATCYDLRFP-ELARALALAGADVIVVPAAWVAGPGKEEHWETLLRARALENTVYVAAAGQAGP-----RGIGRS 212 (255)
T ss_pred CceEEEEEEecccCH-HHHHHHHHCCCcEEEECCcccCCCCchHHHHHHHHHHHHHhCCEEEEEcCcCC-----Ccccce
Confidence 899999999999999 68899999999999999999876667778888999999999999999999996 588999
Q ss_pred EEE-eCCcEEEecCCCCcCceeEEEEEEecchhhhhhccCCch
Q 009537 160 CVV-VNGDMIAQGSQFSLRDVEVVVAQVDLDAVAGFRGSISSF 201 (532)
Q Consensus 160 ~I~-~nG~ilaq~~~f~~~d~evi~a~VDl~~vr~~R~~~~s~ 201 (532)
+|+ |+|+++++.+.. .++++++||+++++..|.+.+.+
T Consensus 213 ~i~~p~G~i~~~~~~~----~~~l~~~id~~~~~~~r~~~~~~ 251 (255)
T cd07581 213 MVVDPLGVVLADLGER----EGLLVADIDPERVEEAREALPVL 251 (255)
T ss_pred EEECCCcceeeecCCC----CcEEEEEeCHHHHHHHHHhCcch
Confidence 999 999999998753 37999999999999999775543
No 21
>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases). DCase hydrolyses N-carbamyl-D-amino acids to produce D-amino acids. It is an important biocatalyst in the pharmaceutical industry, producing useful D-amino acids for example in the preparation of beta-lactam antibiotics. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 6. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Agrobacterium radiobacter DCase forms a tetramer (dimer of dimers). Some DCases may form trimers.
Probab=99.94 E-value=8.9e-26 Score=231.58 Aligned_cols=160 Identities=21% Similarity=0.300 Sum_probs=134.2
Q ss_pred eeEEEEEEEe-CCeEEEEEecccCCCCCCCc--------ccccccccC-CCCcccccccchhhhhhccCceeeccceeEE
Q 009537 8 ERYNCQVLCL-NRKIIMIRPKLWLANDGNYR--------ELRWFTAWK-QKDQLEDFLLPHEISEALCQKSVPFGYGFIQ 77 (532)
Q Consensus 8 ~~YN~avvi~-~GkIl~i~~K~hL~~~g~~~--------E~R~Ftpg~-~~~~~e~~~lp~~i~~~~~q~~vPfGd~v~~ 77 (532)
++||+++++. +|+|+++|+|+||++.+.|. |.+||++|+ .. .+|+
T Consensus 106 ~~yNsa~~i~~~G~i~~~y~K~~l~~~~e~~p~~~~~~~e~~~~~~G~~~~-------------------------~v~~ 160 (302)
T cd07569 106 RRFNTSILVDKSGKIVGKYRKVHLPGHKEPEPYRPFQHLEKRYFEPGDLGF-------------------------PVFR 160 (302)
T ss_pred eeeeEEEEECCCCCEeeeeeEEecCCCcccCcccccccccccccCCCCCCC-------------------------ceEe
Confidence 7999999995 89999999999999887654 667777776 32 4899
Q ss_pred eCCccEEEeeecccCCCchHHHHHHhCCCeEEEEccCCCccC------C--cHHHHHHHHHHHHHHhCCeEEEEcCCcCC
Q 009537 78 FLDTAVAVEVCEELFTPIPPHADLALNGVEVFMNASGSHHQL------R--KLDYRIRAFISATHSRGGVYMYSNQQGCD 149 (532)
Q Consensus 78 ~~~~~iG~eICeDlw~P~~~~~~lal~GaeIIlnpSaS~~~~------~--k~~~r~~li~~~a~~~g~~yvyaN~~G~d 149 (532)
++++|||+.||+|+||| +..+.++++|||||+++++++... . +...|...++++|.+|+++++++|++|.+
T Consensus 161 ~~~~rig~~IC~D~~fp-e~~r~~a~~Ga~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~arA~en~~~vv~~n~~G~~ 239 (302)
T cd07569 161 VPGGIMGMCICNDRRWP-ETWRVMGLQGVELVLLGYNTPTHNPPAPEHDHLRLFHNLLSMQAGAYQNGTWVVAAAKAGME 239 (302)
T ss_pred cCCceEEEEEeeccccc-hHHHHHHHCCCcEEEeecCCcccCCCccccchhhHHHHHHHHhhhhhcccceEEEeeccccC
Confidence 99999999999999999 678999999999999986653211 1 12345556788999999999999999988
Q ss_pred CCceeeeccEEEE-eCCcEEEecCCCCcCceeEEEEEEecchhhhhhcc
Q 009537 150 GGRLYFDGCSCVV-VNGDMIAQGSQFSLRDVEVVVAQVDLDAVAGFRGS 197 (532)
Q Consensus 150 g~~l~fdG~S~I~-~nG~ilaq~~~f~~~d~evi~a~VDl~~vr~~R~~ 197 (532)
+...|.|.|+|+ |+|+++++++.+.+ ++++++||++.++..|..
T Consensus 240 -~~~~~~G~S~ii~p~G~vla~~~~~~e---~~~~a~id~~~~~~~r~~ 284 (302)
T cd07569 240 -DGCDLIGGSCIVAPTGEIVAQATTLED---EVIVADCDLDLCREGRET 284 (302)
T ss_pred -CCceEecceEEECCCCCEEEecCCCCC---cEEEEEecHHHhhhcccc
Confidence 456788999999 99999999998753 689999999999888763
No 22
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.93 E-value=1.3e-25 Score=224.23 Aligned_cols=159 Identities=23% Similarity=0.273 Sum_probs=139.5
Q ss_pred CeeEEEEEEEe-CCeEEEEEecccCCCCCCCcccccccccCCCCcccccccchhhhhhccCceeeccceeEEeCCccEEE
Q 009537 7 SERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFLLPHEISEALCQKSVPFGYGFIQFLDTAVAV 85 (532)
Q Consensus 7 g~~YN~avvi~-~GkIl~i~~K~hL~~~g~~~E~R~Ftpg~~~~~~e~~~lp~~i~~~~~q~~vPfGd~v~~~~~~~iG~ 85 (532)
+++||+++++. +|+|++.|+|+||+. .|.+||++|+.. .+|+++++|+|+
T Consensus 93 ~~~~Ns~~~i~~~G~i~~~y~K~~l~~----~e~~~~~~G~~~-------------------------~~~~~~~~~~g~ 143 (258)
T cd07584 93 GKVYNSAVVIDPEGESLGVYRKIHLWG----LEKQYFREGEQY-------------------------PVFDTPFGKIGV 143 (258)
T ss_pred CceEEEEEEECCCCCEEeEEEeecCCc----hhhhhccCCCCC-------------------------eeEEcCCceEEE
Confidence 58999999998 899999999999974 488999999764 478999999999
Q ss_pred eeecccCCCchHHHHHHhCCCeEEEEccCCCccCCcHHHHHHHHHHHHHHhCCeEEEEcCCcCCCCceeeeccEEEE-eC
Q 009537 86 EVCEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVV-VN 164 (532)
Q Consensus 86 eICeDlw~P~~~~~~lal~GaeIIlnpSaS~~~~~k~~~r~~li~~~a~~~g~~yvyaN~~G~dg~~l~fdG~S~I~-~n 164 (532)
.||+|+||| +..+.++++|||||++|++|+.. ..+.|..+.+.+|.+|+++++++|++|.+ +...|.|.|+|+ |+
T Consensus 144 ~IC~D~~fp-e~~r~~~~~gadll~~ps~~~~~--~~~~~~~~~~~rA~En~~~vv~~n~~g~~-~~~~~~G~S~ii~p~ 219 (258)
T cd07584 144 MICYDMGFP-EVARILTLKGAEVIFCPSAWREQ--DADIWDINLPARALENTVFVAAVNRVGNE-GDLVLFGKSKILNPR 219 (258)
T ss_pred EEEcCccCh-HHHHHHHHCCCcEEEECCccCCC--CchHHHHHHHHHHHhCCcEEEEECccccC-CCceecceeEEECCC
Confidence 999999999 78999999999999999998764 33556678899999999999999999988 556788999999 99
Q ss_pred CcEEEecCCCCcCceeEEEEEEecchhhhhhccCCch
Q 009537 165 GDMIAQGSQFSLRDVEVVVAQVDLDAVAGFRGSISSF 201 (532)
Q Consensus 165 G~ilaq~~~f~~~d~evi~a~VDl~~vr~~R~~~~s~ 201 (532)
|+++++++.+++ ++++++||++.++..|...+.+
T Consensus 220 G~il~~~~~~~~---~~~~~~id~~~~~~~r~~~p~~ 253 (258)
T cd07584 220 GQVLAEASEEAE---EILYAEIDLDAIADYRMTLPYL 253 (258)
T ss_pred CceeeecCCCCC---cEEEEEeCHHHHHHHHhhCchh
Confidence 999999988753 7899999999999998765443
No 23
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.93 E-value=1.7e-25 Score=223.77 Aligned_cols=162 Identities=22% Similarity=0.301 Sum_probs=140.6
Q ss_pred CeeeCCeeEEEEEEEeCCeEEEEEecccCCCCCCCcccccccccCCCCcccccccchhhhhhccCceeeccceeEEeCCc
Q 009537 2 PVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFLLPHEISEALCQKSVPFGYGFIQFLDT 81 (532)
Q Consensus 2 Pv~~~g~~YN~avvi~~GkIl~i~~K~hL~~~g~~~E~R~Ftpg~~~~~~e~~~lp~~i~~~~~q~~vPfGd~v~~~~~~ 81 (532)
|.+.++++||+++++.+++.++.|+|+||+. .|.+||++|+.. .+|+++++
T Consensus 83 ~~~~~~~~yNs~~vi~~~g~i~~y~K~~l~~----~E~~~~~~G~~~-------------------------~v~~~~~~ 133 (261)
T cd07585 83 IEKAGDRPYNTYLVCLPDGLVHRYRKLHLFR----REHPYIAAGDEY-------------------------PVFATPGV 133 (261)
T ss_pred cccCCCceeEEEEEECCCCcEeEEeeecCCc----cccceEcCCCCC-------------------------ceEEcCCc
Confidence 4455678999999998655579999999985 489999999765 48999999
Q ss_pred cEEEeeecccCCCchHHHHHHhCCCeEEEEccCCCccC--CcHHHHHHHHHHHHHHhCCeEEEEcCCcCCCCceeeeccE
Q 009537 82 AVAVEVCEELFTPIPPHADLALNGVEVFMNASGSHHQL--RKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCS 159 (532)
Q Consensus 82 ~iG~eICeDlw~P~~~~~~lal~GaeIIlnpSaS~~~~--~k~~~r~~li~~~a~~~g~~yvyaN~~G~dg~~l~fdG~S 159 (532)
|||+.||+|+|+| +..+.++++|||||++|++|+... .....|..+++.+|.+|+++++++|.+|.+ ++..|.|.|
T Consensus 134 rig~~IC~D~~~p-e~~r~l~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~~n~~g~~-~~~~~~G~S 211 (261)
T cd07585 134 RFGILICYDNHFP-ENVRATALLGAEILFAPHATPGTTSPKGREWWMRWLPARAYDNGVFVAACNGVGRD-GGEVFPGGA 211 (261)
T ss_pred eEEEEEEcCCcCc-HHHHHHHHCCCCEEEECCccCCCCCcchHHHHHHHhHHHHhhcCeEEEEecccccC-CCceecceE
Confidence 9999999999999 689999999999999999987644 234566778899999999999999999998 478899999
Q ss_pred EEE-eCCcEEEecCCCCcCceeEEEEEEecchhhhhhcc
Q 009537 160 CVV-VNGDMIAQGSQFSLRDVEVVVAQVDLDAVAGFRGS 197 (532)
Q Consensus 160 ~I~-~nG~ilaq~~~f~~~d~evi~a~VDl~~vr~~R~~ 197 (532)
+|+ |+|+++++++.+. ..+++++||++.++..|..
T Consensus 212 ~i~~p~G~v~~~~~~~~---e~~l~~~id~~~~~~~r~~ 247 (261)
T cd07585 212 MILDPYGRVLAETTSGG---DGMVVADLDLDLINTVRGR 247 (261)
T ss_pred EEECCCCCEEeccCCCC---CcEEEEEecHHHHHHhhcc
Confidence 999 9999999998875 3789999999999988854
No 24
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases). Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic
Probab=99.93 E-value=2.2e-25 Score=228.13 Aligned_cols=158 Identities=18% Similarity=0.190 Sum_probs=134.8
Q ss_pred CeeEEEEEEEe-CCeEEEEEecccCCCCCCCcccccccccCCCCcccccccchhhhhhccCceeeccceeEEeC-CccEE
Q 009537 7 SERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFLLPHEISEALCQKSVPFGYGFIQFL-DTAVA 84 (532)
Q Consensus 7 g~~YN~avvi~-~GkIl~i~~K~hL~~~g~~~E~R~Ftpg~~~~~~e~~~lp~~i~~~~~q~~vPfGd~v~~~~-~~~iG 84 (532)
+++||+++++. +|+|++.|+|+||+. +.++|++|+... .+|++. |.|||
T Consensus 99 ~~~yNsa~~i~~~G~i~~~YrK~hl~~-----~~e~~~~G~~~~------------------------~v~~~~~g~riG 149 (291)
T cd07565 99 KNPYNTAIIIDDQGEIVLKYRKLHPWV-----PIEPWYPGDLGT------------------------PVCEGPKGSKIA 149 (291)
T ss_pred CceEEEEEEECCCCcEEEEEEecccCC-----CcccccCCCCCc------------------------eeeECCCCCEEE
Confidence 67999999998 799999999999852 334578887521 477774 67999
Q ss_pred EeeecccCCCchHHHHHHhCCCeEEEEccCCCccCCcHHHHHHHHHHHHHHhCCeEEEEcCCcCCCCceeeeccEEEE-e
Q 009537 85 VEVCEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVV-V 163 (532)
Q Consensus 85 ~eICeDlw~P~~~~~~lal~GaeIIlnpSaS~~~~~k~~~r~~li~~~a~~~g~~yvyaN~~G~dg~~l~fdG~S~I~-~ 163 (532)
+.||+|+||| +..+.++++|||||++|++|+... ..+|..+++++|.+|++++++||++|.+ +...|.|.|+|+ |
T Consensus 150 ~~ICyD~~fP-e~~r~la~~GAdill~ps~~~~~~--~~~w~~~~~aRA~En~~~vv~aN~~G~~-~~~~~~G~S~ivdP 225 (291)
T cd07565 150 LIICHDGMYP-EIARECAYKGAELIIRIQGYMYPA--KDQWIITNKANAWCNLMYTASVNLAGFD-GVFSYFGESMIVNF 225 (291)
T ss_pred EEEEcCCCCc-HHHHHHHHCCCeEEEECCcCCCCc--chHHHHHHHHHHHhcCcEEEEecccccC-CCceeeeeeEEECC
Confidence 9999999999 789999999999999999998654 3567788999999999999999999987 456788999999 9
Q ss_pred CCcEEEecCCCCcCceeEEEEEEecchhhhhhccCCc
Q 009537 164 NGDMIAQGSQFSLRDVEVVVAQVDLDAVAGFRGSISS 200 (532)
Q Consensus 164 nG~ilaq~~~f~~~d~evi~a~VDl~~vr~~R~~~~s 200 (532)
+|+++++++.++ .++++++||++.++..|...+.
T Consensus 226 ~G~ila~~~~~~---e~i~~adid~~~~~~~R~~~~~ 259 (291)
T cd07565 226 DGRTLGEGGREP---DEIVTAELSPSLVRDARKNWGS 259 (291)
T ss_pred CCCEEEeCCCCC---CcEEEEEEcHHHHHHHHhcCCC
Confidence 999999998764 3689999999999998876544
No 25
>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.93 E-value=2.1e-25 Score=223.21 Aligned_cols=157 Identities=22% Similarity=0.273 Sum_probs=133.8
Q ss_pred CeeeCCeeEEEEEEEeCCeEEEEEecccCCCCCCCcccccccccCCCCcccccccchhhhhhccCceeeccceeEEeCCc
Q 009537 2 PVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFLLPHEISEALCQKSVPFGYGFIQFLDT 81 (532)
Q Consensus 2 Pv~~~g~~YN~avvi~~GkIl~i~~K~hL~~~g~~~E~R~Ftpg~~~~~~e~~~lp~~i~~~~~q~~vPfGd~v~~~~~~ 81 (532)
|...++++||+++++.++++++.|+|+||+. .|.+||++|+... .+|+++++
T Consensus 83 ~~~~~~~~yNs~~vi~~~Gi~~~y~K~~l~~----~e~~~~~~G~~~~------------------------~~~~~~~~ 134 (259)
T cd07577 83 PERDGDKFYNSAVVVGPEGYIGIYRKTHLFY----EEKLFFEPGDTGF------------------------RVFDIGDI 134 (259)
T ss_pred eeccCCceEEEEEEECCCccEeeEeeccCCh----hhhccccCCCCCC------------------------ceEEeCCc
Confidence 4556788999999998544999999999974 5899999997321 48999999
Q ss_pred cEEEeeecccCCCchHHHHHHhCCCeEEEEccCCCccCCcHHHHHHHHHHHHHHhCCeEEEEcCCcCCC---Cceeeecc
Q 009537 82 AVAVEVCEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDG---GRLYFDGC 158 (532)
Q Consensus 82 ~iG~eICeDlw~P~~~~~~lal~GaeIIlnpSaS~~~~~k~~~r~~li~~~a~~~g~~yvyaN~~G~dg---~~l~fdG~ 158 (532)
|+|+.||+|+|+| +..+.++++|||||++|++++.. .+..+++.+|.+|++++++||++|.+. ++..|.|.
T Consensus 135 ~ig~~IC~D~~fp-e~~r~~~~~Gadli~~ps~~~~~-----~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~~~~G~ 208 (259)
T cd07577 135 RIGVMICFDWYFP-EAARTLALKGADIIAHPANLVLP-----YCPKAMPIRALENRVFTITANRIGTEERGGETLRFIGK 208 (259)
T ss_pred EEEEEEEcCcccc-hHHHHHHHcCCCEEEECCccCCc-----hhhhhhhHhhhhcCceEEEEecCcccCCCCCCceEeee
Confidence 9999999999999 68899999999999999998642 244567899999999999999999862 46789999
Q ss_pred EEEE-eCCcEEEecCCCCcCceeEEEEEEecchhhhhh
Q 009537 159 SCVV-VNGDMIAQGSQFSLRDVEVVVAQVDLDAVAGFR 195 (532)
Q Consensus 159 S~I~-~nG~ilaq~~~f~~~d~evi~a~VDl~~vr~~R 195 (532)
|+|+ |+|+++++++.+.+ +++++++|++.++..|
T Consensus 209 S~i~~p~G~i~~~~~~~~e---~~~~~~id~~~~~~~~ 243 (259)
T cd07577 209 SQITSPKGEVLARAPEDGE---EVLVAEIDPRLARDKR 243 (259)
T ss_pred eEEECCCCCEEeecCCCCC---cEEEEEEchHHhhccc
Confidence 9999 99999999987653 6899999999887654
No 26
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=99.93 E-value=9.7e-26 Score=225.14 Aligned_cols=157 Identities=31% Similarity=0.399 Sum_probs=134.0
Q ss_pred HhhHHHHHHHHHHHhCCCeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCC
Q 009537 246 AFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKR 325 (532)
Q Consensus 246 ~~~~a~~L~dylrrs~~~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~ 325 (532)
+..++.||+||++++|.+|++|+||||+|||++|+|+. +| +|.+
T Consensus 2 ~~~l~~~L~~~~~~~g~~~vVvglSGGiDSav~A~La~-------~A--------------lg~~--------------- 45 (242)
T PF02540_consen 2 IEALVDFLRDYVKKSGAKGVVVGLSGGIDSAVVAALAV-------KA--------------LGPD--------------- 45 (242)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEEETSSHHHHHHHHHHH-------HH--------------HGGG---------------
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEcCCCCCHHHHHHHHH-------HH--------------hhhc---------------
Confidence 56789999999999999999999999999999999994 66 5544
Q ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEechHHHHHHHHHhhhhh------CCCCCCc----------------
Q 009537 326 IFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLT------GKRPRYK---------------- 383 (532)
Q Consensus 326 ~~~t~~m~t~nSs~~t~~~A~~LA~~iG~~h~~i~Id~~v~a~~~~f~~~~------g~~p~~~---------------- 383 (532)
++++++||+.++++++.++|+.||+.||++|.++||+++++++.+.+.... ...++.+
T Consensus 46 ~v~~v~mp~~~~~~~~~~~A~~la~~lgi~~~~i~i~~~~~~~~~~~~~~~~~~~~~Ni~aR~Rm~~ly~~a~~~~~lVl 125 (242)
T PF02540_consen 46 NVLAVIMPSGFSSEEDIEDAKELAEKLGIEYIVIDIDPIFDAFLKSLEPADDDLARGNIQARIRMTTLYALANKYNYLVL 125 (242)
T ss_dssp EEEEEEEESSTSTHHHHHHHHHHHHHHTSEEEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTEEEB
T ss_pred cccccccccccCChHHHHHHHHHHHHhCCCeeccchHHHHHHHhhhhccchhhhhhhhHHHHHHHHHHHHHhcccceEEe
Confidence 599999999999999999999999999999999999999999887665432 0111111
Q ss_pred ------------------------------------------------------------chhhhcCCCEeeeceeeEEE
Q 009537 384 ------------------------------------------------------------LDEVDMGMTYEELSVYGRLR 403 (532)
Q Consensus 384 ------------------------------------------------------------tDE~dmGmtY~~L~~~~rlr 403 (532)
|||++||+||++||.|.+ .
T Consensus 126 gT~N~sE~~~Gy~T~~GD~~~d~~Pi~~L~K~eV~~la~~l~ip~~ii~k~Psa~L~~gqtDE~elg~~Y~~lD~~l~-~ 204 (242)
T PF02540_consen 126 GTGNKSELLLGYFTKYGDGAGDIAPIADLYKTEVRELARYLGIPEEIIEKPPSAGLWPGQTDEDELGFSYEELDAILR-L 204 (242)
T ss_dssp E--CHHHHHHTCSHTTTTTSSSBETTTTS-HHHHHHHHHHTTCGHHHHCS--BHHSSTT-BHHHHHTSTHHHHHHHHH-H
T ss_pred cCCcHHHhhcCcccccCcccccceeeCCcCHHHHHHHHHHHhhHHHHhcCCCCCCCCCCCCCHHHhCCCHHHHHHHHH-H
Confidence 999999999999999999 6
Q ss_pred eecCCChHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHhhcccCcC
Q 009537 404 KIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMT 449 (532)
Q Consensus 404 ~~~~~gp~~m~~~L~~~w~~~~~~~~i~~kVk~ff~~~~~nrhKr~ 449 (532)
.+.+.+|.++...+ .++ .+.|+++.+++.+|+|||.
T Consensus 205 ~~~~~~~~~~~~~~------~~~----~~~~~~i~~~~~~~~hKr~ 240 (242)
T PF02540_consen 205 IEEGLSPEEIAEKL------GVD----PEVVERIERLHKRSEHKRR 240 (242)
T ss_dssp HTSSTTHHHHHHTC------TS-----HHHHHHHHHHHHHTGGGGS
T ss_pred HHcCCCHHHHHHhc------CCC----HHHHHHHHHHHHhhhhccC
Confidence 78889999998764 244 4788888999999999996
No 27
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.92 E-value=8.5e-25 Score=223.50 Aligned_cols=171 Identities=20% Similarity=0.169 Sum_probs=130.6
Q ss_pred CeeEEEEEEEe-CCeEEEEEecccCCCCCCCcccccccccCCCCcccccccchhhhhhccCc-eeeccceeEEeCCccEE
Q 009537 7 SERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFLLPHEISEALCQK-SVPFGYGFIQFLDTAVA 84 (532)
Q Consensus 7 g~~YN~avvi~-~GkIl~i~~K~hL~~~g~~~E~R~Ftpg~~~~~~e~~~lp~~i~~~~~q~-~vPfGd~v~~~~~~~iG 84 (532)
+++||+++++. +|+|++.|+|+||+... . .++|.... .++ ....|.. ...| .+++++++|||
T Consensus 106 ~~~yNsa~~i~~~G~i~~~yrK~hl~~~~----~-e~~p~~~~---~~~------~~~~g~g~~~~~--~v~~~~~~~iG 169 (294)
T cd07582 106 GLYFNTAFIIDPSGEIILRYRKMNSLAAE----G-SPSPHDVW---DEY------IEVYGYGLDALF--PVADTEIGNLG 169 (294)
T ss_pred CcEEEEEEEECCCCcEEEEEeeeccCccc----c-ccCccchh---hhh------cccCCCcccccc--eeecCCCceEE
Confidence 67999999998 79999999999997521 1 11111000 000 0000000 0001 47889999999
Q ss_pred EeeecccCCCchHHHHHHhCCCeEEEEccCCCccCCcHHHHHHHHHHHHHHhCCeEEEEcCCcCCCC---ceeeeccEEE
Q 009537 85 VEVCEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGG---RLYFDGCSCV 161 (532)
Q Consensus 85 ~eICeDlw~P~~~~~~lal~GaeIIlnpSaS~~~~~k~~~r~~li~~~a~~~g~~yvyaN~~G~dg~---~l~fdG~S~I 161 (532)
+.||+|+||| ++.+.++++|||||++|++++...+ ...|..+.+++|.+|+++++++|++|.++. ...|+|.|+|
T Consensus 170 ~~ICyD~~fp-e~~r~la~~Gadlil~psa~~~~~~-~~~~~~~~~arA~en~~~vv~aN~~G~~~~~~~~~~~~G~S~i 247 (294)
T cd07582 170 CLACEEGLYP-EVARGLAMNGAEVLLRSSSEVPSVE-LDPWEIANRARALENLAYVVSANSGGIYGSPYPADSFGGGSMI 247 (294)
T ss_pred EEEeecccCh-HHHHHHHHCCCcEEEEcCCCCCCcc-hhhHHHHHHHHHHhcCCEEEEecccccCcccccCceecceeEE
Confidence 9999999999 7899999999999999999986553 345666889999999999999999998754 3679999999
Q ss_pred E-eCCcEEEecCCCCcCceeEEEEEEecchhhhhhcc
Q 009537 162 V-VNGDMIAQGSQFSLRDVEVVVAQVDLDAVAGFRGS 197 (532)
Q Consensus 162 ~-~nG~ilaq~~~f~~~d~evi~a~VDl~~vr~~R~~ 197 (532)
+ |+|+++++++.+.+ .++++++||++.++..|..
T Consensus 248 vdp~G~vla~~~~~~~--e~il~~~id~~~~~~~R~~ 282 (294)
T cd07582 248 VDYKGRVLAEAGYGPG--SMVAGAEIDIEALRRARAR 282 (294)
T ss_pred ECCCCCEEEeCCCCCC--CeEEEEEEcHHHHHHHHHh
Confidence 9 99999999988731 3689999999999988865
No 28
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases). Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that
Probab=99.92 E-value=7.1e-25 Score=224.54 Aligned_cols=167 Identities=15% Similarity=0.109 Sum_probs=138.9
Q ss_pred eeeCCeeEEEEEEEe-CCeEEEEEecccCCCCCCCcccccccccCCCCcccccccchhhhhhccCceeeccceeEEeCCc
Q 009537 3 VIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFLLPHEISEALCQKSVPFGYGFIQFLDT 81 (532)
Q Consensus 3 v~~~g~~YN~avvi~-~GkIl~i~~K~hL~~~g~~~E~R~Ftpg~~~~~~e~~~lp~~i~~~~~q~~vPfGd~v~~~~~~ 81 (532)
.+.++++||+++++. +|+|++.|+|+||. +.|.+||++|+... + .||+++++
T Consensus 98 ~~~~~~~yNs~~vi~~~G~i~~~y~K~~l~----~~E~~~~~~g~~~~----~-------------------~v~~~~~~ 150 (297)
T cd07564 98 ERDGGTLYNTQLLIDPDGELLGKHRKLKPT----HAERLVWGQGDGSG----L-------------------RVVDTPIG 150 (297)
T ss_pred eccCCceEEEEEEEcCCCCEeeeeeccCCC----chhhhhcccCCCCC----c-------------------eEEecCCc
Confidence 345678999999998 79999999999985 36999999986421 0 48999999
Q ss_pred cEEEeeecccCCCchHHHHHHhCCCeEEEEccCC--CccCCcHHHHHHHHHHHHHHhCCeEEEEcCCcCC----------
Q 009537 82 AVAVEVCEELFTPIPPHADLALNGVEVFMNASGS--HHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCD---------- 149 (532)
Q Consensus 82 ~iG~eICeDlw~P~~~~~~lal~GaeIIlnpSaS--~~~~~k~~~r~~li~~~a~~~g~~yvyaN~~G~d---------- 149 (532)
|||+.||+|+||| +..+.++++|||||++++++ +...+ ..+|..+.+++|.+|++++++||++|.+
T Consensus 151 kig~~ICyD~~fP-e~~r~~a~~ga~ii~~~~~~~~~~~~~-~~~~~~~~~arAien~~~vv~~N~vG~~~~~~~~~~~~ 228 (297)
T cd07564 151 RLGALICWENYMP-LARYALYAQGEQIHVAPWPDFSPYYLS-REAWLAASRHYALEGRCFVLSACQVVTEEDIPADCEDD 228 (297)
T ss_pred eEEEEEEhhcCCH-HHHHHHHHCCCeEEEECCCCccccccc-HHHHHHHHHHHHHhcCCEEEEcccccChhHcccccccc
Confidence 9999999999999 78899999999999998764 32333 3566788999999999999999999953
Q ss_pred ----CCceeeeccEEEE-eCCcEEEecCCCCcCceeEEEEEEecchhhhhhccCCch
Q 009537 150 ----GGRLYFDGCSCVV-VNGDMIAQGSQFSLRDVEVVVAQVDLDAVAGFRGSISSF 201 (532)
Q Consensus 150 ----g~~l~fdG~S~I~-~nG~ilaq~~~f~~~d~evi~a~VDl~~vr~~R~~~~s~ 201 (532)
.+...|.|.|+|+ |+|+++++++.+. .++++++||++.++..|...+.+
T Consensus 229 ~~~~~~~~~~~G~S~iv~P~G~il~~~~~~~---e~~l~a~id~~~~~~~r~~~~~~ 282 (297)
T cd07564 229 EEADPLEVLGGGGSAIVGPDGEVLAGPLPDE---EGILYADIDLDDIVEAKLDFDPV 282 (297)
T ss_pred cccccccccCCCceEEECCCCCeecCCCCCC---ceEEEEEecHHHHHHHHhcCCCC
Confidence 1345689999999 9999999987654 47999999999999988765544
No 29
>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.92 E-value=8.5e-25 Score=222.42 Aligned_cols=158 Identities=14% Similarity=0.086 Sum_probs=127.5
Q ss_pred CeeeCCeeEEEEEEEeCCeEEEEEecccCCCCCCCcccccccccCCCCcccccccchhhhhhccCceeeccceeEEeCCc
Q 009537 2 PVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFLLPHEISEALCQKSVPFGYGFIQFLDT 81 (532)
Q Consensus 2 Pv~~~g~~YN~avvi~~GkIl~i~~K~hL~~~g~~~E~R~Ftpg~~~~~~e~~~lp~~i~~~~~q~~vPfGd~v~~~~~~ 81 (532)
+...++++||+++++.++++++.|+|+||+. .|.+||++|+.. .+|+++++
T Consensus 79 ~~~~~~~~yNs~~vi~~~G~i~~Y~K~hL~~----~E~~~f~~G~~~-------------------------~v~~~~~~ 129 (279)
T cd07579 79 AEADGDGLYNSAVLVGPEGLVGTYRKTHLIE----PERSWATPGDTW-------------------------PVYDLPLG 129 (279)
T ss_pred eEccCCcEEEEEEEEeCCeeEEEEecccCCC----cchhhccCCCCC-------------------------eeEEcCce
Confidence 3455678999999998655889999999975 489999999764 48899999
Q ss_pred cEEEeeecccCCCchHHHHHHhCCCeEEEEccCCCc-----------------cCCcH-HHHHHHHHHHHHHhCCeEEEE
Q 009537 82 AVAVEVCEELFTPIPPHADLALNGVEVFMNASGSHH-----------------QLRKL-DYRIRAFISATHSRGGVYMYS 143 (532)
Q Consensus 82 ~iG~eICeDlw~P~~~~~~lal~GaeIIlnpSaS~~-----------------~~~k~-~~r~~li~~~a~~~g~~yvya 143 (532)
|||+.||||+||| ++.+.++++|||||++|++++. ..++. .+| .++++||.+|++++++|
T Consensus 130 kiG~~ICyD~~fP-e~~r~~a~~Ga~ii~~psa~~~~~~~~~~~~~~~~~~~~~~~~~~~~w-~~~~aRA~EN~~~vv~a 207 (279)
T cd07579 130 RVGLLIGHDALFP-EAGRVLALRGCDLLACPAAIAIPFVGAHAGTSVPQPYPIPTGADPTHW-HLARVRAGENNVYFAFA 207 (279)
T ss_pred eEEEEEeccccCc-HHHHHHHHCCCCEEEECCCcCCccccccccccccCCCCCcCccchhHH-HHhHhHHhhCCeEEEEe
Confidence 9999999999999 7899999999999999999753 12221 234 37899999999999999
Q ss_pred cCCcCCCCceeeeccEEEE-eCCcEEEecCCCCcCceeEEEEEEecchhhh
Q 009537 144 NQQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLRDVEVVVAQVDLDAVAG 193 (532)
Q Consensus 144 N~~G~dg~~l~fdG~S~I~-~nG~ilaq~~~f~~~d~evi~a~VDl~~vr~ 193 (532)
|++|.+ ..|.|.|+|+ |+|.+++.+.....+++++++++||++.++.
T Consensus 208 N~~g~~---~~~~G~S~ii~P~G~v~~~~~~~~~~~e~~l~a~id~~~~~~ 255 (279)
T cd07579 208 NVPDPA---RGYTGWSGVFGPDTFAFPRQEAAIGDEEGIAWALIDTSNLDS 255 (279)
T ss_pred eccCCc---cccccccEEECCCeEEcchhhcccCCCCcEEEEEecchhhcc
Confidence 999975 2368999999 9999984321001123579999999998876
No 30
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases). These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking
Probab=99.92 E-value=1.1e-24 Score=223.92 Aligned_cols=148 Identities=14% Similarity=0.031 Sum_probs=127.0
Q ss_pred eeEEEEEEEe-CCeEEEEEecccCCCCCCCcccccccccCCCCcccccccchhhhhhccCceeeccceeEEeCCc-cEEE
Q 009537 8 ERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFLLPHEISEALCQKSVPFGYGFIQFLDT-AVAV 85 (532)
Q Consensus 8 ~~YN~avvi~-~GkIl~i~~K~hL~~~g~~~E~R~Ftpg~~~~~~e~~~lp~~i~~~~~q~~vPfGd~v~~~~~~-~iG~ 85 (532)
++||+++++. +|+|++.|+|+||+ .|..||++|.... .+|+++++ |||+
T Consensus 127 ~~yNsa~vi~~~G~iv~~YrK~hLf-----~E~~~~~~G~~~~------------------------~vf~t~~g~kiGv 177 (299)
T cd07567 127 YQYNTNVVFDRDGTLIARYRKYNLF-----GEPGFDVPPEPEI------------------------VTFDTDFGVTFGI 177 (299)
T ss_pred ceeEEEEEEcCCCCccceEeecccc-----ccccccCCCCCCc------------------------eEEECCCCCEEEE
Confidence 6899999998 79999999999996 4899999985321 48899965 9999
Q ss_pred eeecccCCCchHHHHHHhC-CCeEEEEccCCCccCCcHHHHHHHHHHHHHHhCCeEEEEcCCcCCCCceeeeccEEEE-e
Q 009537 86 EVCEELFTPIPPHADLALN-GVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVV-V 163 (532)
Q Consensus 86 eICeDlw~P~~~~~~lal~-GaeIIlnpSaS~~~~~k~~~r~~li~~~a~~~g~~yvyaN~~G~dg~~l~fdG~S~I~-~ 163 (532)
.||+|+||| ++.+.++++ |||||++|++|+...+. ..|..++++||.+|+++++.||++|.. .|.|+|+|+ |
T Consensus 178 lICyD~~FP-E~~r~la~~~GAdlil~paaw~~~~~~-~~w~~l~~arA~eN~~~vi~~N~~g~~----~~~G~S~iv~P 251 (299)
T cd07567 178 FTCFDILFK-EPALELVKKLGVDDIVFPTAWFSELPF-LTAVQIQQAWAYANGVNLLAANYNNPS----AGMTGSGIYAG 251 (299)
T ss_pred EEEeeccch-HHHHHHHHhCCCCEEEECCccCCCCCc-hhHHHHHHHHHHHcCceEEEecCCCCc----CccccceEEcC
Confidence 999999999 789999999 99999999999765443 467788999999999999999999864 356999999 9
Q ss_pred C-CcEEEecCCCCcCceeEEEEEEecchhh
Q 009537 164 N-GDMIAQGSQFSLRDVEVVVAQVDLDAVA 192 (532)
Q Consensus 164 n-G~ilaq~~~f~~~d~evi~a~VDl~~vr 192 (532)
+ |+++++++... +.++++++||++.+|
T Consensus 252 ~~G~v~a~~~~~~--~e~~l~~~id~~~~~ 279 (299)
T cd07567 252 RSGALVYHYDNEP--GGKLLVAEVPKLPSR 279 (299)
T ss_pred CCCcEEEEecCCC--CceEEEEEccCCccc
Confidence 9 99999986532 247999999998776
No 31
>PRK13286 amiE acylamide amidohydrolase; Provisional
Probab=99.92 E-value=2e-24 Score=225.91 Aligned_cols=157 Identities=15% Similarity=0.181 Sum_probs=134.6
Q ss_pred CeeEEEEEEEe-CCeEEEEEecccCCCCCCCcccccccccCCCCcccccccchhhhhhccCceeeccceeEEeC-CccEE
Q 009537 7 SERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFLLPHEISEALCQKSVPFGYGFIQFL-DTAVA 84 (532)
Q Consensus 7 g~~YN~avvi~-~GkIl~i~~K~hL~~~g~~~E~R~Ftpg~~~~~~e~~~lp~~i~~~~~q~~vPfGd~v~~~~-~~~iG 84 (532)
+.+||++++|. +|+|++.|+|+|++ .+.++|+||+.. .+|++. +.|||
T Consensus 113 ~~~yNta~vi~~~G~i~~~YrK~~p~-----~~~e~~~pG~~~-------------------------~v~~~~~G~kiG 162 (345)
T PRK13286 113 KAPYNTLILINDKGEIVQKYRKIMPW-----CPIEGWYPGDCT-------------------------YVSEGPKGLKIS 162 (345)
T ss_pred CceeEEEEEECCCCeEEEEEEeecCC-----chhhceecCCCC-------------------------EEEeCCCCcEEE
Confidence 46899999998 79999999999975 344567888754 377774 56999
Q ss_pred EeeecccCCCchHHHHHHhCCCeEEEEccCCCccCCcHHHHHHHHHHHHHHhCCeEEEEcCCcCCCCceeeeccEEEE-e
Q 009537 85 VEVCEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVV-V 163 (532)
Q Consensus 85 ~eICeDlw~P~~~~~~lal~GaeIIlnpSaS~~~~~k~~~r~~li~~~a~~~g~~yvyaN~~G~dg~~l~fdG~S~I~-~ 163 (532)
+.||+|+||| +..|.++++|||||++|++++.. +.++|..+.+++|.+|++++++||++|.+ +...|.|+|+|+ |
T Consensus 163 ~lIC~D~~fP-E~~R~la~~GAelii~psa~~~~--~~~~~~~~~rarA~eN~~yVv~aN~~G~~-~~~~~~G~S~Ivdp 238 (345)
T PRK13286 163 LIICDDGNYP-EIWRDCAMKGAELIVRCQGYMYP--AKEQQVLVAKAMAWANNCYVAVANAAGFD-GVYSYFGHSAIIGF 238 (345)
T ss_pred EEEEecccCh-HHHHHHHHcCCeEEEEccccCCC--chHHHHHHHHHHHHHCCCEEEEEeccccc-CCceeeeeEEEECC
Confidence 9999999999 79999999999999999998653 34567788999999999999999999988 456889999999 9
Q ss_pred CCcEEEecCCCCcCceeEEEEEEecchhhhhhccCCc
Q 009537 164 NGDMIAQGSQFSLRDVEVVVAQVDLDAVAGFRGSISS 200 (532)
Q Consensus 164 nG~ilaq~~~f~~~d~evi~a~VDl~~vr~~R~~~~s 200 (532)
+|+++++++.++ .++++++||++.++..|....+
T Consensus 239 ~G~vla~~~~~~---e~ii~adld~~~i~~~R~~~~~ 272 (345)
T PRK13286 239 DGRTLGECGEEE---MGIQYAQLSVSQIRDARRNDQS 272 (345)
T ss_pred CCcEEEecCCCC---CeEEEEEEeHHHHHHHHHhCCc
Confidence 999999988764 3789999999999999976544
No 32
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=99.92 E-value=2.8e-24 Score=212.37 Aligned_cols=159 Identities=23% Similarity=0.318 Sum_probs=141.5
Q ss_pred eeeCCeeEEEEEEEe-CCeEEEEEecccCCCCCCCcccccccccCCCCcccccccchhhhhhccCceeeccceeEEeCCc
Q 009537 3 VIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFLLPHEISEALCQKSVPFGYGFIQFLDT 81 (532)
Q Consensus 3 v~~~g~~YN~avvi~-~GkIl~i~~K~hL~~~g~~~E~R~Ftpg~~~~~~e~~~lp~~i~~~~~q~~vPfGd~v~~~~~~ 81 (532)
...++++||+++++. +|++++.|+|.||++ |.|..||++|+.. .+|+++++
T Consensus 85 ~~~~~~~~N~~~~i~~~G~i~~~~~K~~l~~---~~E~~~~~~g~~~-------------------------~~f~~~~~ 136 (253)
T cd07197 85 EKDGDKLYNTAVVIDPDGEIIGKYRKIHLFD---FGERRYFSPGDEF-------------------------PVFDTPGG 136 (253)
T ss_pred EccCCceEEEEEEECCCCeEEEEEEEeecCC---CcccceecCCCCC-------------------------ceEEcCCc
Confidence 445678999999998 589999999999986 5799999999764 48999999
Q ss_pred cEEEeeecccCCCchHHHHHHhCCCeEEEEccCCCccCCcHHHHHHHHHHHHHHhCCeEEEEcCCcCCCCceeeeccEEE
Q 009537 82 AVAVEVCEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCV 161 (532)
Q Consensus 82 ~iG~eICeDlw~P~~~~~~lal~GaeIIlnpSaS~~~~~k~~~r~~li~~~a~~~g~~yvyaN~~G~dg~~l~fdG~S~I 161 (532)
|+|+.||+|+|+| ++.+.++++|||||++||++++.. ...+..+++.+|.++++++++||.+|.+ ++..|.|.|+|
T Consensus 137 ~ig~~IC~d~~~~-~~~~~~~~~g~dli~~ps~~~~~~--~~~~~~~~~~~A~e~~~~vv~~n~~G~~-~~~~~~G~S~i 212 (253)
T cd07197 137 KIGLLICYDLRFP-ELARELALKGADIILVPAAWPTAR--REHWELLLRARAIENGVYVVAANRVGEE-GGLEFAGGSMI 212 (253)
T ss_pred eEEEEEEecCCCc-HHHHHHHHCCCcEEEECCcCCCcc--hHHHHHHHHHHHHHhCCeEEEecCCCCC-CCccccceeEE
Confidence 9999999999999 678999999999999999998754 5677889999999999999999999988 57889999999
Q ss_pred E-eCCcEEEecCCCCcCceeEEEEEEecchhhhhhcc
Q 009537 162 V-VNGDMIAQGSQFSLRDVEVVVAQVDLDAVAGFRGS 197 (532)
Q Consensus 162 ~-~nG~ilaq~~~f~~~d~evi~a~VDl~~vr~~R~~ 197 (532)
+ |.|+++++.+.+ + ++++++||++.++..|..
T Consensus 213 ~~p~G~~~~~~~~~-~---~~~~~~id~~~~~~~r~~ 245 (253)
T cd07197 213 VDPDGEVLAEASEE-E---GILVAELDLDELREARKR 245 (253)
T ss_pred ECCCCceeeecCCC-C---cEEEEEeCHHHHHHHHhh
Confidence 9 999999999887 2 688999999999888864
No 33
>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.92 E-value=2.6e-24 Score=215.35 Aligned_cols=153 Identities=21% Similarity=0.249 Sum_probs=129.5
Q ss_pred CCeeEEEEEEEeCCeEEEEEecccCCCCCCCcccccccccCCCCcccccccchhhhhhccCceeeccceeEEeCCccEEE
Q 009537 6 GSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFLLPHEISEALCQKSVPFGYGFIQFLDTAVAV 85 (532)
Q Consensus 6 ~g~~YN~avvi~~GkIl~i~~K~hL~~~g~~~E~R~Ftpg~~~~~~e~~~lp~~i~~~~~q~~vPfGd~v~~~~~~~iG~ 85 (532)
++++||+++++.++++++.|+|+||. +.|.+||++|+... .+|+++++|+|+
T Consensus 92 ~~~~yNs~~vi~~~g~~~~y~K~h~~----~~e~~~~~~g~~~~------------------------~v~~~~~~rig~ 143 (258)
T cd07578 92 SGIYYNSAVLIGPSGVIGRHRKTHPY----ISEPKWAADGDLGH------------------------QVFDTEIGRIAL 143 (258)
T ss_pred CCCeeEEEEEECCCCcEEeEeeecCC----cccccccCCCCCCc------------------------eEEECCCccEEE
Confidence 36799999999976699999999984 35899999987421 489999999999
Q ss_pred eeecccCCCchHHHHHHhCCCeEEEEccCCCccCCcHHHHHHHHHHHHHHhCCeEEEEcCCcCCCCceeeeccEEEE-eC
Q 009537 86 EVCEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVV-VN 164 (532)
Q Consensus 86 eICeDlw~P~~~~~~lal~GaeIIlnpSaS~~~~~k~~~r~~li~~~a~~~g~~yvyaN~~G~dg~~l~fdG~S~I~-~n 164 (532)
.||+|+||| +..+.++++||+||++||+|+....+... ...+|.+|+++++++|++|.+ +...|.|.|+|+ |+
T Consensus 144 ~IC~D~~fp-e~~r~~~~~ga~ll~~ps~~~~~~~~~~~----~~~rA~en~~~vv~an~~G~~-~~~~~~G~S~ii~p~ 217 (258)
T cd07578 144 LICMDIHFF-ETARLLALGGADVICHISNWLAERTPAPY----WINRAFENGCYLIESNRWGLE-RGVQFSGGSCIIEPD 217 (258)
T ss_pred EEeeCCCch-HHHHHHHHcCCCEEEEcCCCCCCCCcchH----HHHhhhcCCeEEEEecceecc-CCcceeeEEEEECCC
Confidence 999999999 78899999999999999998754333222 257999999999999999988 557889999999 99
Q ss_pred CcEEEecCCCCcCceeEEEEEEecchhhhhhc
Q 009537 165 GDMIAQGSQFSLRDVEVVVAQVDLDAVAGFRG 196 (532)
Q Consensus 165 G~ilaq~~~f~~~d~evi~a~VDl~~vr~~R~ 196 (532)
|+++++.+. +.++++++||++.++..|.
T Consensus 218 G~il~~~~~----~e~~~~a~id~~~~~~~r~ 245 (258)
T cd07578 218 GTIQASIDS----GDGVALGEIDLDRARHRQF 245 (258)
T ss_pred CcEeeccCC----CCceEEEEecchHhhhhhc
Confidence 999998763 2378999999999988875
No 34
>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases). Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.92 E-value=2.8e-24 Score=217.25 Aligned_cols=164 Identities=16% Similarity=0.103 Sum_probs=135.4
Q ss_pred CeeeCCeeEEEEEEEe-CCeEEEEEecccCCCCCCCcccccccccCCCCcccccccchhhhhhccCceeeccceeEEeCC
Q 009537 2 PVIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFLLPHEISEALCQKSVPFGYGFIQFLD 80 (532)
Q Consensus 2 Pv~~~g~~YN~avvi~-~GkIl~i~~K~hL~~~g~~~E~R~Ftpg~~~~~~e~~~lp~~i~~~~~q~~vPfGd~v~~~~~ 80 (532)
|+..++++||+++++. +|++ +.|+|+||+..+ .|..+|++|+.. .+|++++
T Consensus 94 ~~~~~~~~yNs~~~i~~~G~v-~~y~K~~l~~~e--~~~~~~~~G~~~-------------------------~v~~~~~ 145 (280)
T cd07574 94 PVREDGRLYNRAYLFGPDGTI-GHQDKLHMTPFE--REEWGISGGDKL-------------------------KVFDTDL 145 (280)
T ss_pred EEcCCCCeEEEEEEECCCCCE-EEEeeeccCchh--hhcccccCCCCc-------------------------eEEecCC
Confidence 3456788999999998 5666 999999998642 344567888754 4899999
Q ss_pred ccEEEeeecccCCCchHHHHHHhCCCeEEEEccCCCccCCcHHHHHHHHHHHHHHhCCeEEEEcCCcCCC---Cceeeec
Q 009537 81 TAVAVEVCEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDG---GRLYFDG 157 (532)
Q Consensus 81 ~~iG~eICeDlw~P~~~~~~lal~GaeIIlnpSaS~~~~~k~~~r~~li~~~a~~~g~~yvyaN~~G~dg---~~l~fdG 157 (532)
+|||+.||+|+|+| ++.+.++++|||||++|++++...+.. .+...++++|.+|++++++||++|.++ ....|.|
T Consensus 146 ~~ig~~IC~D~~fp-e~~r~l~~~ga~ii~~ps~~~~~~~~~-~~~~~~~arA~en~~~vv~an~~G~~~~~~~~~~~~G 223 (280)
T cd07574 146 GKIGILICYDSEFP-ELARALAEAGADLLLVPSCTDTRAGYW-RVRIGAQARALENQCYVVQSGTVGNAPWSPAVDVNYG 223 (280)
T ss_pred ccEEEEEecccccH-HHHHHHHHcCCCEEEECCcCCccccHH-HHHHHHHHHHHhhCceEEEeCCCCCCCCccccccccc
Confidence 99999999999999 789999999999999999987655433 334457999999999999999999874 1456889
Q ss_pred cEEEE-eC------CcEEEecCCCCcCceeEEEEEEecchhhhhhccC
Q 009537 158 CSCVV-VN------GDMIAQGSQFSLRDVEVVVAQVDLDAVAGFRGSI 198 (532)
Q Consensus 158 ~S~I~-~n------G~ilaq~~~f~~~d~evi~a~VDl~~vr~~R~~~ 198 (532)
+|+|+ |. |.++++++.+. +++++++||++.++..|...
T Consensus 224 ~S~i~~P~~~~~~~g~~l~~~~~~~---e~~~~a~iD~~~~~~~R~~~ 268 (280)
T cd07574 224 QAAVYTPCDFGFPEDGILAEGEPNT---EGWLIADLDLEALRRLREEG 268 (280)
T ss_pred cceeecCCCCCCCCCCeEeecCCCC---CceEEEecCHHHHHHHhhcC
Confidence 99999 85 88999988764 36899999999999998663
No 35
>cd07575 Xc-1258_like Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup belonging to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup either represents a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. XC1258 is a homotetramer.
Probab=99.91 E-value=6.7e-24 Score=211.91 Aligned_cols=162 Identities=17% Similarity=0.198 Sum_probs=135.8
Q ss_pred CeeeCCeeEEEEEEEe-CCeEEEEEecccCCCCCCCcccccccccCCCCcccccccchhhhhhccCceeeccceeEEeCC
Q 009537 2 PVIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFLLPHEISEALCQKSVPFGYGFIQFLD 80 (532)
Q Consensus 2 Pv~~~g~~YN~avvi~-~GkIl~i~~K~hL~~~g~~~E~R~Ftpg~~~~~~e~~~lp~~i~~~~~q~~vPfGd~v~~~~~ 80 (532)
|...++++||+++++. +|++ ..|+|+||+.. ..|..||++|+.. .+|++++
T Consensus 81 ~~~~~~~~yNs~~~i~~~G~i-~~y~K~~l~~~--~~e~~~~~~G~~~-------------------------~~~~~~~ 132 (252)
T cd07575 81 IIKEGGKYYNRLYFVTPDGEV-YHYDKRHLFRM--AGEHKVYTAGNER-------------------------VIVEYKG 132 (252)
T ss_pred EEccCCceEEEEEEECCCCCE-EEEeeeecCCC--CCccceecCCCCc-------------------------eEEEECC
Confidence 4556788999999998 5665 59999999753 3689999999754 4899999
Q ss_pred ccEEEeeecccCCCchHHHHHHhCCCeEEEEccCCCccCCcHHHHHHHHHHHHHHhCCeEEEEcCCcCCCCceeeeccEE
Q 009537 81 TAVAVEVCEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSC 160 (532)
Q Consensus 81 ~~iG~eICeDlw~P~~~~~~lal~GaeIIlnpSaS~~~~~k~~~r~~li~~~a~~~g~~yvyaN~~G~dg~~l~fdG~S~ 160 (532)
.|||+.||+|+|+| +..+.+++ |++|++|++|+... ...|..+.+++|.+|++++++||++|.++.+..|.|.|+
T Consensus 133 ~~ig~~IC~D~~~p-e~~r~~~~--a~lil~~s~~~~~~--~~~~~~~~~arA~en~~~vv~~n~~G~~~~~~~~~G~S~ 207 (252)
T cd07575 133 WKILLQVCYDLRFP-VWSRNTND--YDLLLYVANWPAPR--RAAWDTLLKARAIENQAYVIGVNRVGTDGNGLEYSGDSA 207 (252)
T ss_pred EEEEEEEEeccCCh-HHHHhhcC--CCEEEEeCCCCCCc--hHHHHHHhHHHHhhccceEEEecccccCCCCceEcceeE
Confidence 99999999999999 56666654 99999999987643 245566788999999999999999999865788999999
Q ss_pred EE-eCCcEEEecCCCCcCceeEEEEEEecchhhhhhccCCc
Q 009537 161 VV-VNGDMIAQGSQFSLRDVEVVVAQVDLDAVAGFRGSISS 200 (532)
Q Consensus 161 I~-~nG~ilaq~~~f~~~d~evi~a~VDl~~vr~~R~~~~s 200 (532)
|+ |+|+++++++.+ +++++++||++.++..|...+-
T Consensus 208 i~~p~G~~l~~~~~~----e~~i~~~id~~~~~~~r~~~~~ 244 (252)
T cd07575 208 VIDPLGEPLAEAEED----EGVLTATLDKEALQEFREKFPF 244 (252)
T ss_pred EECCCCceeeEcCCC----ceEEEEEECHHHHHHHHhhCCc
Confidence 99 999999998865 3689999999999988866433
No 36
>PLN02504 nitrilase
Probab=99.91 E-value=1.1e-23 Score=220.70 Aligned_cols=163 Identities=13% Similarity=0.112 Sum_probs=135.7
Q ss_pred eeeCCeeEEEEEEEe-CCeEEEEEecccCCCCCCCcccccccccCCCCcccccccchhhhhhccCceeeccceeEEeCCc
Q 009537 3 VIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFLLPHEISEALCQKSVPFGYGFIQFLDT 81 (532)
Q Consensus 3 v~~~g~~YN~avvi~-~GkIl~i~~K~hL~~~g~~~E~R~Ftpg~~~~~~e~~~lp~~i~~~~~q~~vPfGd~v~~~~~~ 81 (532)
.+.++.+||+++++. +|++++.|+|+|+. +.|.++|++|.... -.+|+++++
T Consensus 127 e~~~~~~yNsa~~i~~~G~i~~~yrK~~p~----~~E~~~f~~G~g~~-----------------------~~vf~~~~g 179 (346)
T PLN02504 127 ERDGYTLYCTVLFFDPQGQYLGKHRKLMPT----ALERLIWGFGDGST-----------------------IPVYDTPIG 179 (346)
T ss_pred ecCCCceEEEEEEECCCCCEEeEEeeccCC----cccceeeecCCCCC-----------------------CceEEcCCc
Confidence 345678999999998 79999999999874 35999999986431 048999999
Q ss_pred cEEEeeecccCCCchHHHHHHhCCCeEEEEccCCCccCCcHHHHHHHHHHHHHHhCCeEEEEcCCcC-------------
Q 009537 82 AVAVEVCEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGC------------- 148 (532)
Q Consensus 82 ~iG~eICeDlw~P~~~~~~lal~GaeIIlnpSaS~~~~~k~~~r~~li~~~a~~~g~~yvyaN~~G~------------- 148 (532)
|||+.||+|+||| +..+.++++|||||++|++++. ..|..+++++|.+|++++++||++|.
T Consensus 180 riG~lICyD~~fP-e~~r~la~~Gadii~~p~~~~~-----~~w~~~~rarA~En~~~Vv~aN~vg~~~~~~~~~~~~~~ 253 (346)
T PLN02504 180 KIGAVICWENRMP-LLRTAMYAKGIEIYCAPTADSR-----ETWQASMRHIALEGGCFVLSANQFCRRKDYPPPPEYLFS 253 (346)
T ss_pred eEEEEEeccchhH-HHHHHHHHCCCeEEEECCCCCc-----hhHHHHHHHHHHccCcEEEEecccccccccCcccccccc
Confidence 9999999999999 7889999999999999998742 45677889999999999999999961
Q ss_pred --CC----CceeeeccEEEE-eCCcEEEecCCCCcCceeEEEEEEecchhhhhhccCCch
Q 009537 149 --DG----GRLYFDGCSCVV-VNGDMIAQGSQFSLRDVEVVVAQVDLDAVAGFRGSISSF 201 (532)
Q Consensus 149 --dg----~~l~fdG~S~I~-~nG~ilaq~~~f~~~d~evi~a~VDl~~vr~~R~~~~s~ 201 (532)
++ +...|.|.|+|+ |+|++++++... ++++++++||++.++..|..++.+
T Consensus 254 G~~~~~~~~~~~~~G~S~IvdP~G~vla~~~~~---~e~il~adiDl~~i~~~R~~~~~~ 310 (346)
T PLN02504 254 GTEEDLTPDSIVCAGGSVIISPSGTVLAGPNYE---GEGLITADLDLGEIARAKFDFDVV 310 (346)
T ss_pred cccccccccccccCcceEEECCCCCEecCCCCC---CCcEEEEEEcHHHHHHHHhhCCcc
Confidence 11 236789999999 999999887532 247999999999999888776543
No 37
>PRK13980 NAD synthetase; Provisional
Probab=99.90 E-value=9.3e-24 Score=213.56 Aligned_cols=171 Identities=23% Similarity=0.298 Sum_probs=140.4
Q ss_pred HHHHHhhHHHHHHHHHHHhCCCeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhh
Q 009537 242 EEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESRE 321 (532)
Q Consensus 242 eeei~~~~a~~L~dylrrs~~~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e 321 (532)
.+++...+..||+||++++|.++++|+||||+||+++|+|+. ++ ++..
T Consensus 10 ~~~~~~~l~~~l~~~v~~~g~~~vvv~lSGGiDSsv~a~l~~-------~~--------------~~~~----------- 57 (265)
T PRK13980 10 YEKVREIIVDFIREEVEKAGAKGVVLGLSGGIDSAVVAYLAV-------KA--------------LGKE----------- 57 (265)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHH-------HH--------------hCcc-----------
Confidence 367888999999999999999999999999999999999884 44 3322
Q ss_pred ccCCeEEEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEechHHHHHHHHHhhhh-----------------------hCC
Q 009537 322 FAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTL-----------------------TGK 378 (532)
Q Consensus 322 ~~~~~~~t~~m~t~nSs~~t~~~A~~LA~~iG~~h~~i~Id~~v~a~~~~f~~~-----------------------~g~ 378 (532)
.+++++|++..++..+.++|+.+|+.+|+.|+.++|+++++++...+... .|.
T Consensus 58 ----~v~av~~~~~~~~~~~~~~a~~la~~lgi~~~~i~i~~~~~~~~~~~~~~~~~~~~n~~aR~R~~~L~~~A~~~g~ 133 (265)
T PRK13980 58 ----NVLALLMPSSVSPPEDLEDAELVAEDLGIEYKVIEITPIVDAFFSAIPDADRLRVGNIMARTRMVLLYDYANRENR 133 (265)
T ss_pred ----ceEEEEeeCCCCCHHHHHHHHHHHHHhCCCeEEEECHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHhhcCC
Confidence 38999999988889999999999999999999999999988775433211 000
Q ss_pred ---------------CCCC-----------c--------------------------------chhhhcCCCEeeeceee
Q 009537 379 ---------------RPRY-----------K--------------------------------LDEVDMGMTYEELSVYG 400 (532)
Q Consensus 379 ---------------~p~~-----------~--------------------------------tDE~dmGmtY~~L~~~~ 400 (532)
-=++ . +||++|||||++||.|+
T Consensus 134 lvlgTgn~sE~~~G~~t~~gD~~~~l~Pl~~l~K~eV~~la~~lgip~~i~~k~psa~L~~~q~De~~lg~~Y~~lD~~l 213 (265)
T PRK13980 134 LVLGTGNKSELLLGYFTKYGDGAVDLNPIGDLYKTQVRELARHLGVPEDIIEKPPSADLWEGQTDEGELGFSYETIDEIL 213 (265)
T ss_pred EEEcCCCHhHHHhCCccCCCCcccCcccCCCCcHHHHHHHHHHHCchHHHhCCCCCcCCCCCCCCHHHcCCCHHHHHHHH
Confidence 0000 0 89999999999999999
Q ss_pred EEEeecCCChHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHhhcccCcCcCCccccccc
Q 009537 401 RLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAES 459 (532)
Q Consensus 401 rlr~~~~~gp~~m~~~L~~~w~~~~~~~~i~~kVk~ff~~~~~nrhKr~~~~Ps~h~e~ 459 (532)
+.....+.+|..|...+. ++ .++|++++++|.+|+|||. +||++|+.+
T Consensus 214 ~~~~~~~~~~~~i~~~~~------~~----~~~~~~i~~~~~~~~~Kr~-~p~~~~~~~ 261 (265)
T PRK13980 214 YLLFDKKMSREEILEELG------VP----EDLVDRVRRLVQRSQHKRR-LPPIPKLSG 261 (265)
T ss_pred HHHHHcCCCHHHHHHHhC------CC----HHHHHHHHHHHHHhhhccc-CCCCcCCCc
Confidence 877777889998887652 44 4789999999999999997 999999743
No 38
>PRK13287 amiF formamidase; Provisional
Probab=99.89 E-value=1.3e-22 Score=211.45 Aligned_cols=157 Identities=23% Similarity=0.221 Sum_probs=131.4
Q ss_pred eeEEEEEEEe-CCeEEEEEecccCCCCCCCcccccccccCCCCcccccccchhhhhhccCceeeccceeEEeC-CccEEE
Q 009537 8 ERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFLLPHEISEALCQKSVPFGYGFIQFL-DTAVAV 85 (532)
Q Consensus 8 ~~YN~avvi~-~GkIl~i~~K~hL~~~g~~~E~R~Ftpg~~~~~~e~~~lp~~i~~~~~q~~vPfGd~v~~~~-~~~iG~ 85 (532)
++||+++++. +|+|++.|+|+|+.. ..++|+||+... .+|++. +.|||+
T Consensus 112 ~~yNsa~vi~~~G~i~~~YrK~h~~~-----p~~~~~pG~~~~------------------------~v~~~~~g~kiG~ 162 (333)
T PRK13287 112 EPYNTAIIIDDQGEIILKYRKLHPWV-----PVEPWEPGDLGI------------------------PVCDGPGGSKLAV 162 (333)
T ss_pred ceEEEEEEECCCCcEEEEEeecccCC-----ccccccCCCCCC------------------------ceEECCCCceEEE
Confidence 3899999997 599999999999732 234577776321 367775 679999
Q ss_pred eeecccCCCchHHHHHHhCCCeEEEEccCCCccCCcHHHHHHHHHHHHHHhCCeEEEEcCCcCCCCceeeeccEEEE-eC
Q 009537 86 EVCEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVV-VN 164 (532)
Q Consensus 86 eICeDlw~P~~~~~~lal~GaeIIlnpSaS~~~~~k~~~r~~li~~~a~~~g~~yvyaN~~G~dg~~l~fdG~S~I~-~n 164 (532)
.||+|+||| +..|.++++|||||++||+++...+ +.|..+.+++|.+|+++++++|++|.+ +...|.|.|+|+ |+
T Consensus 163 ~ICyD~~fP-e~~R~~a~~GAeill~~s~~~~~~~--~~w~~~~~arA~en~~~vv~an~~G~~-~~~~~~G~S~Iidp~ 238 (333)
T PRK13287 163 CICHDGMFP-EMAREAAYKGANVMIRISGYSTQVR--EQWILTNRSNAWQNLMYTASVNLAGYD-GVFYYFGEGQVCNFD 238 (333)
T ss_pred EEEecccch-HHHHHHHHCCCeEEEECCccCCcch--hHHHHHHHHHHHhCCcEEEEEeccccC-CCeeeeeeeEEECCC
Confidence 999999999 7899999999999999999987543 456667789999999999999999988 457788999999 99
Q ss_pred CcEEEecCCCCcCceeEEEEEEecchhhhhhccCCc
Q 009537 165 GDMIAQGSQFSLRDVEVVVAQVDLDAVAGFRGSISS 200 (532)
Q Consensus 165 G~ilaq~~~f~~~d~evi~a~VDl~~vr~~R~~~~s 200 (532)
|+++++++.++ .++++++||++.++..|.....
T Consensus 239 G~vl~~~~~~~---~~ii~aeid~~~~~~~R~~~~~ 271 (333)
T PRK13287 239 GTTLVQGHRNP---WEIVTAEVRPDLADEARLGWGL 271 (333)
T ss_pred CcEEEeCCCCC---CeEEEEEEeHHHHHHHHHhcCc
Confidence 99999998764 3799999999999999876443
No 39
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=99.88 E-value=1.8e-22 Score=202.22 Aligned_cols=160 Identities=41% Similarity=0.563 Sum_probs=132.8
Q ss_pred HHHHHhhHHHHHHHHHHHhCCCeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhh
Q 009537 242 EEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESRE 321 (532)
Q Consensus 242 eeei~~~~a~~L~dylrrs~~~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e 321 (532)
.++++..+++||++|+++++.++++|+||||+||+++|+|+. ++ .+..
T Consensus 3 ~~~~~~~l~~~l~~~~~~~~~~~vvv~lSGGiDSs~~a~la~-------~~--------------~~~~----------- 50 (248)
T cd00553 3 LEEIINALVLFLRDYLRKSGFKGVVLGLSGGIDSALVAALAV-------RA--------------LGRE----------- 50 (248)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEeCCCcHHHHHHHHHHH-------HH--------------hCcc-----------
Confidence 478899999999999999999999999999999999999984 44 2222
Q ss_pred ccCCeEEEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEechHHHHHHHHHhhhhhCCCCCC----------c--------
Q 009537 322 FAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPRY----------K-------- 383 (532)
Q Consensus 322 ~~~~~~~t~~m~t~nSs~~t~~~A~~LA~~iG~~h~~i~Id~~v~a~~~~f~~~~g~~p~~----------~-------- 383 (532)
.+++++|++..++..+.+.|+.+|+.+|+.|.+++|++++..+...+....+.++.. +
T Consensus 51 ----~v~~~~~~~~~~~~~~~~~a~~~a~~lgi~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~n~~ar~R~~~Ly~~A 126 (248)
T cd00553 51 ----NVLALFMPSRYSSEETREDAKELAEALGIEHVNIDIDPAVEAFLALLGESGGSELEDLALGNIQARLRMVILYALA 126 (248)
T ss_pred ----cEEEEECCCCCCCHHHHHHHHHHHHHhCCeEEEeccHHHHHHHHHHHhhhcccchhhHHHHhhHHHHHHHHHHHHH
Confidence 489999999888899999999999999999999999999998766654322222211 0
Q ss_pred --------------------------------------------------------------------chhhhcCCCEee
Q 009537 384 --------------------------------------------------------------------LDEVDMGMTYEE 395 (532)
Q Consensus 384 --------------------------------------------------------------------tDE~dmGmtY~~ 395 (532)
+||++|||||++
T Consensus 127 ~~~~~~vlgTgn~~E~~~G~~t~~gd~~~~i~Pl~~l~K~eV~~la~~~~ip~~i~~k~psa~l~~~q~de~~lg~~Y~~ 206 (248)
T cd00553 127 NKLGGLVLGTGNKSELLLGYFTKYGDGAADINPIGDLYKTQVRELARYLGVPESIIDKPPSAELWPGQTDEDELGMPYEE 206 (248)
T ss_pred HhcCCEEEcCCcHhHHHhCCeeccCCcccCccccCCCcHHHHHHHHHHHCchHHHhcCCCCcccCCCCCCHHHhCCCHHH
Confidence 899999999999
Q ss_pred eceeeEEEeecCCChHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHhhcccCc
Q 009537 396 LSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKM 448 (532)
Q Consensus 396 L~~~~rlr~~~~~gp~~m~~~L~~~w~~~~~~~~i~~kVk~ff~~~~~nrhKr 448 (532)
+|.|.+.....+++|..+... ..+ .++|++++++|.+|+|||
T Consensus 207 lD~~l~~~~~~~~~~~~~~~~-------~~~----~~~~~~i~~~~~~~~~KR 248 (248)
T cd00553 207 LDQFLYLRLEGGLGPEEILAP-------GII----EEVVKRVFRLYKKNEHKR 248 (248)
T ss_pred HHHHHHHHHhcCCCHhhhhcc-------CCC----HHHHHHHHHHHHhccccc
Confidence 999999888888888555322 233 589999999999999998
No 40
>KOG0807 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=99.88 E-value=5.5e-23 Score=199.46 Aligned_cols=169 Identities=15% Similarity=0.120 Sum_probs=145.0
Q ss_pred CeeEEEEEEEe-CCeEEEEEecccCC-----CCCCCcccccccccCCCCcccccccchhhhhhccCceeeccceeEEeCC
Q 009537 7 SERYNCQVLCL-NRKIIMIRPKLWLA-----NDGNYRELRWFTAWKQKDQLEDFLLPHEISEALCQKSVPFGYGFIQFLD 80 (532)
Q Consensus 7 g~~YN~avvi~-~GkIl~i~~K~hL~-----~~g~~~E~R~Ftpg~~~~~~e~~~lp~~i~~~~~q~~vPfGd~v~~~~~ 80 (532)
.++||+-++++ .|+|+..|.|+||+ +.+.+.|+..-.||+... ..++++-
T Consensus 107 ~k~~N~hl~id~~G~i~a~Y~KlHLFDVeipg~~~lkES~~t~pG~~i~------------------------~pv~tP~ 162 (295)
T KOG0807|consen 107 QKLRNTHLLIDSKGEIRAEYQKLHLFDVEIPGGPRLKESNTTQPGTAIE------------------------SPVDTPL 162 (295)
T ss_pred ceeeeeEEEEcCCchHHHHHhhhceeEeecCCCcccccccCcCCCcccC------------------------CccCCcc
Confidence 68999999997 89999999999995 456678888888887652 2577888
Q ss_pred ccEEEeeecccCCCchHHHHHHhCCCeEEEEccCCCccCCcHHHHHHHHHHHHHHhCCeEEEEcCCcCCCCceeeeccEE
Q 009537 81 TAVAVEVCEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSC 160 (532)
Q Consensus 81 ~~iG~eICeDlw~P~~~~~~lal~GaeIIlnpSaS~~~~~k~~~r~~li~~~a~~~g~~yvyaN~~G~dg~~l~fdG~S~ 160 (532)
+|+|+.||||++|| +++..+..+||+|++.|||.....|+. .|+.|+++||.+++|++|.+.|+|.....---.|+||
T Consensus 163 GklGlaICYDiRFp-E~sl~LR~~gA~iLtyPSAFT~~TG~A-HWEiLlRARAietQCYVvaaaQ~G~HneKR~SyGhSM 240 (295)
T KOG0807|consen 163 GKLGLAICYDIRFP-ELSLKLRKMGAQILTYPSAFTIKTGEA-HWEILLRARAIETQCYVVAAAQVGKHNEKRESYGHSM 240 (295)
T ss_pred cccceeeeeeccCc-hHHHHHHHcCCcEEeccchhhhcccHH-HHHHHHHHHHhhcceEEEehhhcccccchhhccCcce
Confidence 99999999999999 789999999999999999998877765 5799999999999999999999997644333459999
Q ss_pred EE-eCCcEEEecCCCCcCceeEEEEEEecchhhhhhccCCchhh
Q 009537 161 VV-VNGDMIAQGSQFSLRDVEVVVAQVDLDAVAGFRGSISSFQE 203 (532)
Q Consensus 161 I~-~nG~ilaq~~~f~~~d~evi~a~VDl~~vr~~R~~~~s~~~ 203 (532)
|+ |+|.|||+.+.-+ ..++++|+||++.+.+.|..++-|..
T Consensus 241 iVDPWGtVva~~se~~--~~~l~~AdiDlslld~lr~~mP~~~h 282 (295)
T KOG0807|consen 241 IVDPWGTVVARCSERT--GPGLILADIDLSLLDSLRTKMPLFNH 282 (295)
T ss_pred EEcchhhhheecCCCC--CCceEEEEccHHHHHHHHHhCchhhh
Confidence 99 9999999987644 25899999999999999988777643
No 41
>COG0171 NadE NAD synthase [Coenzyme metabolism]
Probab=99.86 E-value=1.5e-21 Score=196.63 Aligned_cols=165 Identities=29% Similarity=0.340 Sum_probs=129.6
Q ss_pred HHHHHhhHHHHHHHHHHHhCCCeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhh
Q 009537 242 EEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESRE 321 (532)
Q Consensus 242 eeei~~~~a~~L~dylrrs~~~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e 321 (532)
.++....++.||++||++++.+|+||+||||+||+++++|+ ++|++. ++
T Consensus 5 ~~~~~~~~~~fl~~~l~~~~~k~~VlGiSGGiDSa~~~~La-------~~A~~~-------------~~----------- 53 (268)
T COG0171 5 LEEEINRLVDFLRDYLKKAGFKGVVLGLSGGIDSALVLALA-------VRALGK-------------GD----------- 53 (268)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCeEEEcccChHHHHHHHHH-------HHHhcc-------------cc-----------
Confidence 47888899999999999999999999999999999999998 477432 00
Q ss_pred ccCCeEEEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEechHHHHHHHHHhhhhh-CC----------CCCCc-------
Q 009537 322 FAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLT-GK----------RPRYK------- 383 (532)
Q Consensus 322 ~~~~~~~t~~m~t~nSs~~t~~~A~~LA~~iG~~h~~i~Id~~v~a~~~~f~~~~-g~----------~p~~~------- 383 (532)
...++.++.||+...++.+.++|+.+++.||+++.++||.++|+++...+.... |- +++-+
T Consensus 54 -~~~~~~av~mP~~~~~~~~~~da~~~~~~lg~~~~~i~I~~~v~~~~~~~~~~~~~~~~~~~~~~NikaR~Rm~~lY~~ 132 (268)
T COG0171 54 -SKENVLAVRLPYGYTVQADEEDAQDLAEALGIDYKEINIKPAVDAFLKKLLKLFLGIYLEDLALGNIKARLRMVILYAI 132 (268)
T ss_pred -chhheeeEECCCCCccccCHHHHHHHHHHhCCceEEEecHHHHHHHHHhhhhhhcccchhhHHHhhhhHHHHHHHHHHH
Confidence 011599999998754789999999999999999999999999999844332222 21 11111
Q ss_pred ------------------------------------------------------------------------chhhhcCC
Q 009537 384 ------------------------------------------------------------------------LDEVDMGM 391 (532)
Q Consensus 384 ------------------------------------------------------------------------tDE~dmGm 391 (532)
+||++|||
T Consensus 133 An~~~~lVlGTgn~sE~~~Gy~TkyGDg~~d~~Pi~~L~KtqV~~La~~l~ipe~I~~k~PTAeL~~~~~~q~DE~~lg~ 212 (268)
T COG0171 133 ANKLGGLVLGTGNKSELALGYFTKYGDGAVDINPIADLYKTQVYALARHLGIPEEILKKPPTADLWPDEPGQTDEAELGM 212 (268)
T ss_pred HhhcCCEEEcCCcHHHHhcCceecccCcccChhhhcCCcHHHHHHHHHHcCCCHHHhcCCCCccccCCCCCCCCHHHhCC
Confidence 79999999
Q ss_pred CEeeeceeeEEEeecCCChHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHhhcccCcCcCCcccccc
Q 009537 392 TYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAE 458 (532)
Q Consensus 392 tY~~L~~~~rlr~~~~~gp~~m~~~L~~~w~~~~~~~~i~~kVk~ff~~~~~nrhKr~~~~Ps~h~e 458 (532)
||++||.|++.+... + ...+ ...+++++++|..|+|||. +||.++..
T Consensus 213 ~Y~~lD~~L~~~~~~----------~-----~~i~----~~~~~~i~~~~~~~~~KR~-~p~~~~~~ 259 (268)
T COG0171 213 PYEELDDILYGLLEN----------G-----QEIS----EELVKKIERLYKKSEHKRR-LPIGPKIT 259 (268)
T ss_pred CHHHHHHHHHHhhhh----------h-----cccC----HHHHHHHHHHHHHHHhhhc-CCCCcCcc
Confidence 999999999875443 1 1244 4778888899999999998 88777655
No 42
>PRK00768 nadE NAD synthetase; Reviewed
Probab=99.86 E-value=2.1e-21 Score=195.72 Aligned_cols=103 Identities=23% Similarity=0.253 Sum_probs=80.2
Q ss_pred HHHHhhHHHHHHHHHHHhCCCeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhc
Q 009537 243 EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREF 322 (532)
Q Consensus 243 eei~~~~a~~L~dylrrs~~~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~ 322 (532)
++....+.+||+||++++|++|++||||||+|||+||+|+. +|++. .+.+.. .
T Consensus 19 ~~~~~~i~~~L~~~l~~~g~~g~VlGlSGGIDSav~a~L~~-------~A~~~-----------~~~~~~---------~ 71 (268)
T PRK00768 19 EEEIRRRVDFLKDYLKKSGLKSLVLGISGGQDSTLAGRLAQ-------LAVEE-----------LRAETG---------D 71 (268)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHH-------HHHHH-----------hccccc---------C
Confidence 34556677999999999999999999999999999999984 45321 111100 0
Q ss_pred cCCeEEEEEeCCCCCCHHHHHHHHHHHHHhCC-ceEEEechHHHHHHHHHhhh
Q 009537 323 AKRIFYTVFMGSENSSQETRMRAKKLADEIGS-WHLDVSIDTVVSAFLSLFQT 374 (532)
Q Consensus 323 ~~~~~~t~~m~t~nSs~~t~~~A~~LA~~iG~-~h~~i~Id~~v~a~~~~f~~ 374 (532)
-...++++.||. +++.+.++|+.+|+.||+ .|.+|||+++++++.+.+..
T Consensus 72 ~~~~~~~l~mP~--~~~~~~~da~~la~~lgi~~~~~i~I~~~~~~~~~~l~~ 122 (268)
T PRK00768 72 DDYQFIAVRLPY--GVQADEDDAQDALAFIQPDRVLTVNIKPAVDASVAALEA 122 (268)
T ss_pred cceeEEEEECCC--CCcCCHHHHHHHHHhcCCCeeEEEECHHHHHHHHHHHhh
Confidence 001478999996 345689999999999999 89999999999999887653
No 43
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases). ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.
Probab=99.86 E-value=4.7e-21 Score=193.89 Aligned_cols=145 Identities=19% Similarity=0.195 Sum_probs=122.1
Q ss_pred CeeEEEEEEEe-CCeEEEEEecccCCCCCCC---------------cccccccccCCCCcccccccchhhhhhccCceee
Q 009537 7 SERYNCQVLCL-NRKIIMIRPKLWLANDGNY---------------RELRWFTAWKQKDQLEDFLLPHEISEALCQKSVP 70 (532)
Q Consensus 7 g~~YN~avvi~-~GkIl~i~~K~hL~~~g~~---------------~E~R~Ftpg~~~~~~e~~~lp~~i~~~~~q~~vP 70 (532)
+++||+++++. +|++++.|+|+||+..+.+ .|.++|.+|+..
T Consensus 87 ~~~~Ns~~~i~~~G~i~~~y~K~~L~p~~e~~p~~~~~~~~~~~~~~e~~~~~~G~~~---------------------- 144 (270)
T cd07571 87 GRYYNSALLLDPGGGILGRYDKHHLVPFGEYVPLRDLLRFLGLLFDLPMGDFSPGTGP---------------------- 144 (270)
T ss_pred CceEEEEEEECCCCCCcCcEeeeeccCCCCCcCcHHHHHHHHHhcccccCCCCCCCCC----------------------
Confidence 48999999998 5889999999999876543 478889998765
Q ss_pred ccceeEEeCC-ccEEEeeecccCCCchHHHHHHhCCCeEEEEccCCC-ccC-CcHHHHHHHHHHHHHHhCCeEEEEcCCc
Q 009537 71 FGYGFIQFLD-TAVAVEVCEELFTPIPPHADLALNGVEVFMNASGSH-HQL-RKLDYRIRAFISATHSRGGVYMYSNQQG 147 (532)
Q Consensus 71 fGd~v~~~~~-~~iG~eICeDlw~P~~~~~~lal~GaeIIlnpSaS~-~~~-~k~~~r~~li~~~a~~~g~~yvyaN~~G 147 (532)
.+|++++ .|+|+.||+|+|+| ++.+.++++|||+|++||++. +.. ....++..+.+++|.+||+++++||+.
T Consensus 145 ---~vf~~~~~~r~g~~IC~D~~fp-e~~r~~~~~ga~iil~ps~~~~~~~~~~~~~~~~~~~arA~en~~~vv~~n~~- 219 (270)
T cd07571 145 ---QPLLLGGGVRVGPLICYESIFP-ELVRDAVRQGADLLVNITNDAWFGDSAGPYQHLAMARLRAIETGRPLVRAANT- 219 (270)
T ss_pred ---CccccCCCceEEEEEEeeeeCh-HHHHhhcccCCCEEEEcCcccccCCCcchHHHHHHHHHHHHHhCCCEEEEcCC-
Confidence 4889999 99999999999999 789999999999999999843 222 234456678899999999999999974
Q ss_pred CCCCceeeeccEEEE-eCCcEEEecCCCCcCceeEEEEEEecch
Q 009537 148 CDGGRLYFDGCSCVV-VNGDMIAQGSQFSLRDVEVVVAQVDLDA 190 (532)
Q Consensus 148 ~dg~~l~fdG~S~I~-~nG~ilaq~~~f~~~d~evi~a~VDl~~ 190 (532)
|.|+|+ |+|+++++++.+. +++++++||++.
T Consensus 220 ---------G~S~ivdp~G~ii~~~~~~~---e~~~~~~i~~~~ 251 (270)
T cd07571 220 ---------GISAVIDPDGRIVARLPLFE---AGVLVAEVPLRT 251 (270)
T ss_pred ---------eeeEEECCCCcEEeecCCCc---ceEEEEEeccCC
Confidence 578999 9999999998774 378999999865
No 44
>PTZ00323 NAD+ synthase; Provisional
Probab=99.82 E-value=6.4e-20 Score=187.72 Aligned_cols=99 Identities=20% Similarity=0.203 Sum_probs=82.8
Q ss_pred HHHHhhHHHHHHHHHHHhCCCeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhc
Q 009537 243 EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREF 322 (532)
Q Consensus 243 eei~~~~a~~L~dylrrs~~~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~ 322 (532)
+++......||++||+++|.+|++|+||||+|||++|+|++ +++ +... .
T Consensus 27 ~~~i~~~~~~L~~~l~~~g~~~vVVglSGGVDSav~aaLa~-------~al--------------g~~~----------~ 75 (294)
T PTZ00323 27 AAWIEKKCAKLNEYMRRCGLKGCVTSVSGGIDSAVVLALCA-------RAM--------------RMPN----------S 75 (294)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHH-------HHh--------------cccc----------C
Confidence 57778889999999999999999999999999999999985 553 2110 1
Q ss_pred cCCeEEEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEechHHHHHHHHHhh
Q 009537 323 AKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQ 373 (532)
Q Consensus 323 ~~~~~~t~~m~t~nSs~~t~~~A~~LA~~iG~~h~~i~Id~~v~a~~~~f~ 373 (532)
+..+++|++||+ +|++.|+++|+.+|+.+|+.|++|||+++++++...+.
T Consensus 76 ~~~~~~~v~~P~-~ss~~~~~~A~~la~~lGi~~~~idi~~l~~~~~~~i~ 125 (294)
T PTZ00323 76 PIQKNVGLCQPI-HSSAWALNRGRENIQACGATEVTVDQTEIHTQLSSLVE 125 (294)
T ss_pred CceEEEEEECCC-CCCHHHHHHHHHHHHHhCCcEEEEECcHHHHHHHHHHh
Confidence 122689999996 68899999999999999999999999999977755443
No 45
>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases). Saccharomyces cerevisiae NTA1 functions in the N-end rule protein degradation pathway. It specifically deaminates the N-terminal asparagine and glutamine residues of substrates of this pathway, to aspartate and glutamate respectively, these latter are the destabilizing residues. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 3.
Probab=99.79 E-value=3.5e-19 Score=182.91 Aligned_cols=141 Identities=15% Similarity=0.215 Sum_probs=99.1
Q ss_pred CeeEEEEEEEe-CCeEEEEEecccCCCCCCCcccccccccCCC-CcccccccchhhhhhccCceeeccceeEEeCCccEE
Q 009537 7 SERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQK-DQLEDFLLPHEISEALCQKSVPFGYGFIQFLDTAVA 84 (532)
Q Consensus 7 g~~YN~avvi~-~GkIl~i~~K~hL~~~g~~~E~R~Ftpg~~~-~~~e~~~lp~~i~~~~~q~~vPfGd~v~~~~~~~iG 84 (532)
+++||+++++. +|++++.|+|+||++. |..||.++... ...++...| |....+ .++.+.+++||
T Consensus 98 ~~~yNta~vi~~~G~ii~~YrK~HL~~~----~~~~~~~e~~~~~~~~~~~~~-------G~~~~~---~~~~~~~~kiG 163 (295)
T cd07566 98 PKLYNSALVVDPEGEVVFNYRKSFLYYT----DEEWGCEENPGGFQTFPLPFA-------KDDDFD---GGSVDVTLKTS 163 (295)
T ss_pred CceEEEEEEEcCCCeEEEEEeccccCCC----CcccccCCCCCcccccccccc-------cccccc---ccccCCcceeE
Confidence 47999999998 7999999999999864 44566555421 111111001 111111 12334578999
Q ss_pred EeeecccC---C--C---chHHHHHHhCCCeEEEEccCCCccCCcHH-------HH---HHHHHHHH------HHhCCeE
Q 009537 85 VEVCEELF---T--P---IPPHADLALNGVEVFMNASGSHHQLRKLD-------YR---IRAFISAT------HSRGGVY 140 (532)
Q Consensus 85 ~eICeDlw---~--P---~~~~~~lal~GaeIIlnpSaS~~~~~k~~-------~r---~~li~~~a------~~~g~~y 140 (532)
+.||||+| | | .+..|.++++|||||++|++|+...+..+ .| ..+.++++ .+||+++
T Consensus 164 ~~ICyDl~~~rF~~P~~~~E~~r~la~~Gadii~~paaw~~~~~~~~~~~~~~~~~~~~~~~~~~ra~~~~a~~eN~~~v 243 (295)
T cd07566 164 IGICMDLNPYKFEAPFTDFEFATHVLDNGTELIICPMAWLHSLSPTELTVLPQEPDTETVSYWLQRFEPLRAEPLEGTQV 243 (295)
T ss_pred EEEEecCCcccccCCcchHHHHHHHHHCCCCEEEEechhcCCCCcccccccCCCcchhHHHHHHHhhcccccCCCCceEE
Confidence 99999996 7 4 37899999999999999999986544211 11 23345555 4999999
Q ss_pred EEEcCCcCCCCceeeeccEEEE
Q 009537 141 MYSNQQGCDGGRLYFDGCSCVV 162 (532)
Q Consensus 141 vyaN~~G~dg~~l~fdG~S~I~ 162 (532)
++||++|.+ +++.|.|+|+|+
T Consensus 244 v~~Nr~G~~-~~~~f~G~S~i~ 264 (295)
T cd07566 244 VFCNRIGTE-NDTLYAGSSAVI 264 (295)
T ss_pred EEEeccCcc-CCceecCcccee
Confidence 999999998 567889999997
No 46
>PRK00876 nadE NAD synthetase; Reviewed
Probab=99.75 E-value=1.4e-17 Score=172.66 Aligned_cols=91 Identities=25% Similarity=0.295 Sum_probs=79.9
Q ss_pred HHHHhhHHHHHHHHHHH-hCCCeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhh
Q 009537 243 EEIAFGPGCWLWDYLRR-SGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESRE 321 (532)
Q Consensus 243 eei~~~~a~~L~dylrr-s~~~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e 321 (532)
+++...+..||.+++++ .++++++|+||||+|||++|+|+. ++ ++..
T Consensus 13 ~~~~e~i~~~l~~~V~~~~~~~~VvVgLSGGIDSSvvaaLa~-------~a--------------~g~~----------- 60 (326)
T PRK00876 13 AAEAERIRAAIREQVRGTLRRRGVVLGLSGGIDSSVTAALCV-------RA--------------LGKE----------- 60 (326)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCEEEEccCCHHHHHHHHHHH-------Hh--------------hCCC-----------
Confidence 56677788899999999 899999999999999999999884 44 3322
Q ss_pred ccCCeEEEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEechHHHHHHH
Q 009537 322 FAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFL 369 (532)
Q Consensus 322 ~~~~~~~t~~m~t~nSs~~t~~~A~~LA~~iG~~h~~i~Id~~v~a~~ 369 (532)
.+++++|++..++..+.++|+.+|+.+|+.|+.++|+++++++.
T Consensus 61 ----~v~av~~~~~~s~~~e~~~A~~lA~~LGi~~~~i~i~~~~~~~~ 104 (326)
T PRK00876 61 ----RVYGLLMPERDSSPESLRLGREVAEHLGVEYVVEDITPALEALG 104 (326)
T ss_pred ----cEEEEEecCCCCChHHHHHHHHHHHHcCCCEEEEECchHHHHhh
Confidence 48999999887889999999999999999999999999999874
No 47
>TIGR00552 nadE NAD+ synthetase. NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity.
Probab=99.74 E-value=7.7e-18 Score=168.99 Aligned_cols=89 Identities=27% Similarity=0.379 Sum_probs=71.2
Q ss_pred HHHhhHHHHHHHHHHHhCCCeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhcc
Q 009537 244 EIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFA 323 (532)
Q Consensus 244 ei~~~~a~~L~dylrrs~~~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~ 323 (532)
+....+..||++++++.+.++++|+||||+||+++|+|+. ++ .+.+
T Consensus 4 ~~~~~l~~~l~~~v~~~~~~~V~vglSGGiDSsvla~l~~-------~~--------------~~~~------------- 49 (250)
T TIGR00552 4 KYVEEIEDFLRGYVQKSGAKGVVLGLSGGIDSAVVAALCV-------EA--------------LGEQ------------- 49 (250)
T ss_pred hHHHHHHHHHHHHHHHhCCCCEEEECCCcHHHHHHHHHHH-------Hh--------------hCCc-------------
Confidence 4455667799999999999999999999999999998873 33 2211
Q ss_pred CCeEEEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEechHHHHHH
Q 009537 324 KRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAF 368 (532)
Q Consensus 324 ~~~~~t~~m~t~nSs~~t~~~A~~LA~~iG~~h~~i~Id~~v~a~ 368 (532)
.+...+++...++..+.++|+++|+.+|+.|..++|++++.++
T Consensus 50 --~~~~~~~~~~~~~~~e~~~a~~~a~~lgi~~~~i~i~~~~~~~ 92 (250)
T TIGR00552 50 --NHALLLPHSVQTPEQDVQDALALAEPLGINYKNIDIAPIAASF 92 (250)
T ss_pred --eEEEEECCccCCCHHHHHHHHHHHHHhCCeEEEEcchHHHHHH
Confidence 3444455555567889999999999999999999999988754
No 48
>KOG0806 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=99.70 E-value=1.3e-17 Score=168.74 Aligned_cols=167 Identities=16% Similarity=0.148 Sum_probs=139.9
Q ss_pred CCeeEEEEEEEe-CCeEEEEEecccCCCCC-----CCcccccccccCCCCcccccccchhhhhhccCceeeccceeEEeC
Q 009537 6 GSERYNCQVLCL-NRKIIMIRPKLWLANDG-----NYRELRWFTAWKQKDQLEDFLLPHEISEALCQKSVPFGYGFIQFL 79 (532)
Q Consensus 6 ~g~~YN~avvi~-~GkIl~i~~K~hL~~~g-----~~~E~R~Ftpg~~~~~~e~~~lp~~i~~~~~q~~vPfGd~v~~~~ 79 (532)
.+++||++.++. +|+.++.|+|.||++-. .|+|..+|.+|... .++.+.
T Consensus 108 ~~k~yns~~~~~~~g~l~~~yrk~hlFD~d~~~~~ry~e~~~~~~g~~f-------------------------~~~~~~ 162 (298)
T KOG0806|consen 108 GDKLYNSCADSSCPGDGLAKYRKNHLFDTDGPGVIRYRESHLLSPGDQF-------------------------TVVDTS 162 (298)
T ss_pred cccccCcccccCCCcchhheeeeeEEeccCCccceeeeeeeccCCCcCC-------------------------CcccCC
Confidence 579999999997 99999999999999641 28999999999876 256667
Q ss_pred CccEEEeeecccCCCchHHHHHHhCCCeEEEEccCCC---ccCCcHHHHHHHHHHHHHHhCCeEEEEcCCcCCCCceeee
Q 009537 80 DTAVAVEVCEELFTPIPPHADLALNGVEVFMNASGSH---HQLRKLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFD 156 (532)
Q Consensus 80 ~~~iG~eICeDlw~P~~~~~~lal~GaeIIlnpSaS~---~~~~k~~~r~~li~~~a~~~g~~yvyaN~~G~dg~~l~fd 156 (532)
.+|||+.||+|+||| ++++.++++||++|+.|.||. ...+ ..+|..+.++++..|..++..+|..+..++.....
T Consensus 163 ~gkfGi~IC~Di~F~-d~A~~~~~~g~~~ivyPtaw~~~~l~~~-~~hw~~~~~~~a~~n~~~v~~~s~~~~~s~~y~~~ 240 (298)
T KOG0806|consen 163 YGKFGIFICFDIRFY-DPAMILVKDGADLIVYPTAWNNELLSAV-PLHWALLMRARANDNAANVHAPSPARTGSGIYAPR 240 (298)
T ss_pred CCceEEEEEeccccc-chHHHHHHcCCcEEEecchHhhhccccc-chHHHHHHhCCcccceeeeeccCcCcCCceeeecC
Confidence 799999999999999 799999999999999999998 3333 23567788999999999999999988765555566
Q ss_pred c-cEEEE-eCCcEEEecCCCCcCceeEEEEEEecchhhhhhccCCchhh
Q 009537 157 G-CSCVV-VNGDMIAQGSQFSLRDVEVVVAQVDLDAVAGFRGSISSFQE 203 (532)
Q Consensus 157 G-~S~I~-~nG~ilaq~~~f~~~d~evi~a~VDl~~vr~~R~~~~s~~~ 203 (532)
| +|.++ |.|+||+....- .+++++++|++.+.+.|...+.++.
T Consensus 241 gshs~~~~p~gkvl~a~~~~----~e~~~a~~d~~~~~~~rq~~~~~~~ 285 (298)
T KOG0806|consen 241 GSHSIMVNPTGKVLAAAVEK----EEIIYADVDPSAIASRRQGLPVFRQ 285 (298)
T ss_pred CcceeecCCcceEeeeccCC----CccccccCCHHHHHHHhcccchhhc
Confidence 7 99999 999999887542 3589999999999998877666554
No 49
>KOG0808 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=99.69 E-value=8.5e-17 Score=157.83 Aligned_cols=164 Identities=18% Similarity=0.215 Sum_probs=136.4
Q ss_pred eCCeeEEEEEEEe-CCeEEEEEecccCCCCCCCcccccccccCCCCcccccccchhhhhhccCceeeccceeEEeCCccE
Q 009537 5 KGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFLLPHEISEALCQKSVPFGYGFIQFLDTAV 83 (532)
Q Consensus 5 ~~g~~YN~avvi~-~GkIl~i~~K~hL~~~g~~~E~R~Ftpg~~~~~~e~~~lp~~i~~~~~q~~vPfGd~v~~~~~~~i 83 (532)
|+.+++|++++|. +|.|+|.++|-|+|.-|.|.|+.|+..|+-. ..||+|..+||
T Consensus 175 hgdvlwntavvisn~g~vigk~rknhiprvgdfnestyymeg~lg------------------------hpvfet~fgri 230 (387)
T KOG0808|consen 175 HGDVLWNTAVVISNNGNVIGKHRKNHIPRVGDFNESTYYMEGDLG------------------------HPVFETVFGRI 230 (387)
T ss_pred cCceeeeeeEEEccCCceecccccccCCcccccCcceeEeecCCC------------------------CceeeeecceE
Confidence 6779999999997 7999999999999999999999999888754 36999999999
Q ss_pred EEeeecccCCCchHHHHHHhCCCeEEEEccCCCccCCcHHHHHHHHHHHHHHhCCeEEEEcCCcCC--------CC----
Q 009537 84 AVEVCEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCD--------GG---- 151 (532)
Q Consensus 84 G~eICeDlw~P~~~~~~lal~GaeIIlnpSaS~~~~~k~~~r~~li~~~a~~~g~~yvyaN~~G~d--------g~---- 151 (532)
|+.|||...+| -.+-.++++|||||+||||.--.+... .|-.-.+.+|..|.++.+..|++|.+ |+
T Consensus 231 avnicygrhhp-lnwlmy~lngaeiifnpsatvgalsep-lwpiearnaaianh~ft~~inrvgtevfpneftsgdgkpa 308 (387)
T KOG0808|consen 231 AVNICYGRHHP-LNWLMYGLNGAEIIFNPSATVGALSEP-LWPIEARNAAIANHYFTGSINRVGTEVFPNEFTSGDGKPA 308 (387)
T ss_pred EEEeeccCCCc-hhhhhhhccCceEEECCccccccccCc-cCchhhhhhhhhhceEEEeecccccccCCCcccCCCCCcc
Confidence 99999999999 567789999999999999975444322 23344678899999999999999954 22
Q ss_pred ---ceeeeccEEEE-eCCcEEEecCCCCcCceeEEEEEEecchhhhhhcc
Q 009537 152 ---RLYFDGCSCVV-VNGDMIAQGSQFSLRDVEVVVAQVDLDAVAGFRGS 197 (532)
Q Consensus 152 ---~l~fdG~S~I~-~nG~ilaq~~~f~~~d~evi~a~VDl~~vr~~R~~ 197 (532)
--+|.|+|-++ |++...-..++.. ..++++++||..+|++...
T Consensus 309 h~dfghfygssy~aapd~srtp~lsr~r---dgllia~ldlnlcrq~kd~ 355 (387)
T KOG0808|consen 309 HNDFGHFYGSSYFAAPDASRTPSLSRYR---DGLLIADLDLNLCRQYKDK 355 (387)
T ss_pred cccccccccceeeecCCCCCCccccccc---cceEEeecchHHHHHhhhh
Confidence 23688999999 9998776666654 3789999999999988754
No 50
>PRK00302 lnt apolipoprotein N-acyltransferase; Reviewed
Probab=99.68 E-value=2.5e-16 Score=172.79 Aligned_cols=144 Identities=19% Similarity=0.130 Sum_probs=115.0
Q ss_pred eeEEEEEEEeCCeEEEEEecccCCCCCCCccc---------------ccccccCCCCcccccccchhhhhhccCceeecc
Q 009537 8 ERYNCQVLCLNRKIIMIRPKLWLANDGNYREL---------------RWFTAWKQKDQLEDFLLPHEISEALCQKSVPFG 72 (532)
Q Consensus 8 ~~YN~avvi~~GkIl~i~~K~hL~~~g~~~E~---------------R~Ftpg~~~~~~e~~~lp~~i~~~~~q~~vPfG 72 (532)
+.||+++++.+|+++..|+|+||...|+|--. .+|+||+..
T Consensus 309 ~~yNsa~~i~~g~~~~~Y~K~~LvPfgE~~P~~~~~~~~~~~~~~~~~~~~~G~~~------------------------ 364 (505)
T PRK00302 309 DYYNSIYVLGPYGILNRYDKHHLVPFGEYVPLESLLRPLAPFFNLPMGDFSRGPYV------------------------ 364 (505)
T ss_pred ceeeEEEEECCCCCcCcccccccCCCcCCCChHHHHHHHHHhcCCCcCCCCCCCCC------------------------
Confidence 68999999998999999999999877764211 134455421
Q ss_pred ceeEEeCCccEEEeeecccCCCchHHHHHHhCCCeEEEEccCCC-ccCCc-HHHHHHHHHHHHHHhCCeEEEEcCCcCCC
Q 009537 73 YGFIQFLDTAVAVEVCEELFTPIPPHADLALNGVEVFMNASGSH-HQLRK-LDYRIRAFISATHSRGGVYMYSNQQGCDG 150 (532)
Q Consensus 73 d~v~~~~~~~iG~eICeDlw~P~~~~~~lal~GaeIIlnpSaS~-~~~~k-~~~r~~li~~~a~~~g~~yvyaN~~G~dg 150 (532)
..++++++.|+|+.||||.++| +..+.++++|||+|+|+|+.. +.... ..++..+.+.||.|||.+++.+|..
T Consensus 365 ~~v~~~~~~~ig~~ICyE~~fp-e~~r~~~~~ga~~lv~~snd~Wf~~~~~~~qh~~~~~~RAiEng~~vvra~n~---- 439 (505)
T PRK00302 365 QPPLLAKGLKLAPLICYEIIFP-EEVRANVRQGADLLLNISNDAWFGDSIGPYQHFQMARMRALELGRPLIRATNT---- 439 (505)
T ss_pred CCCcccCCceEEEEEeehhcCh-HHHHhhccCCCCEEEEccchhhcCCCCchHHHHHHHHHHHHHhCCceEEecCc----
Confidence 1478889999999999999999 788999999999999999842 22222 4466778899999999999999864
Q ss_pred CceeeeccEEEE-eCCcEEEecCCCCcCceeEEEEEEecc
Q 009537 151 GRLYFDGCSCVV-VNGDMIAQGSQFSLRDVEVVVAQVDLD 189 (532)
Q Consensus 151 ~~l~fdG~S~I~-~nG~ilaq~~~f~~~d~evi~a~VDl~ 189 (532)
|.|.|+ |+|+++++.+.+++ ++++++||+.
T Consensus 440 ------G~Saiidp~G~i~~~~~~~~~---~~l~~~i~~~ 470 (505)
T PRK00302 440 ------GITAVIDPLGRIIAQLPQFTE---GVLDGTVPPT 470 (505)
T ss_pred ------eeeEEECCCCCEeeecCCCce---eEEEEEeccC
Confidence 568888 99999999987753 6888888874
No 51
>TIGR00546 lnt apolipoprotein N-acyltransferase. This enzyme transfers the acyl group to lipoproteins in the lgt/lsp/lnt system which is found broadly in bacteria but not in archaea. This model represents one component of the "lipoprotein lgt/lsp/lnt system" genome property.
Probab=99.59 E-value=4.7e-15 Score=157.74 Aligned_cols=124 Identities=17% Similarity=0.136 Sum_probs=100.7
Q ss_pred eeEEEEEEEe-CCeEEEEEecccCCCCCCCcc----------------cccccccCCCCcccccccchhhhhhccCceee
Q 009537 8 ERYNCQVLCL-NRKIIMIRPKLWLANDGNYRE----------------LRWFTAWKQKDQLEDFLLPHEISEALCQKSVP 70 (532)
Q Consensus 8 ~~YN~avvi~-~GkIl~i~~K~hL~~~g~~~E----------------~R~Ftpg~~~~~~e~~~lp~~i~~~~~q~~vP 70 (532)
+.||+++++. +|++++.|+|+||...|+|-- .++|++|++.
T Consensus 248 ~~yNsa~~~~~~G~~~~~Y~K~~LvPfgEyiP~~~~~~~~~~~~~~~~~~~~~~G~~~---------------------- 305 (391)
T TIGR00546 248 HYYNSAYLVDPGGEVVQRYDKVKLVPFGEYIPLGFLFKWLSKLFFLLSQEDFSRGPGP---------------------- 305 (391)
T ss_pred ceeeEEEEECCCCCccccccceeccCCcCCCChHHHHHHHHHHhccCCccCCCCCCCC----------------------
Confidence 6899999997 799999999999987775421 2355555543
Q ss_pred ccceeEEeCCccEEEeeecccCCCchHHHHHHhCCCeEEEEccCCCccCC--cHHHHHHHHHHHHHHhCCeEEEEcCCcC
Q 009537 71 FGYGFIQFLDTAVAVEVCEELFTPIPPHADLALNGVEVFMNASGSHHQLR--KLDYRIRAFISATHSRGGVYMYSNQQGC 148 (532)
Q Consensus 71 fGd~v~~~~~~~iG~eICeDlw~P~~~~~~lal~GaeIIlnpSaS~~~~~--k~~~r~~li~~~a~~~g~~yvyaN~~G~ 148 (532)
.++++++.|+|+.||||.++| +..+.++++|||+|+|+|+..+.-. ...++..+.+.||.||+.+++.||+.
T Consensus 306 ---~~~~~~~~~~g~~ICyE~~fp-~~~r~~~~~Ga~~lv~~snd~wf~~s~~~~qh~~~~~~RAiEn~~~vvra~n~-- 379 (391)
T TIGR00546 306 ---QVLKLPGGKIAPLICYESIFP-DLVRASARQGAELLVNLTNDAWFGDSSGPWQHFALARFRAIENGRPLVRATNT-- 379 (391)
T ss_pred ---CCCcCCCceeeeeEEeehhch-HHHHhhccCCCCEEEEecchhhcCCCCChHHHHHHHHHHHHHhCCcEEEecCC--
Confidence 367788899999999999999 7889999999999999998654322 24566788899999999999999975
Q ss_pred CCCceeeeccEEEE-eCCcE
Q 009537 149 DGGRLYFDGCSCVV-VNGDM 167 (532)
Q Consensus 149 dg~~l~fdG~S~I~-~nG~i 167 (532)
|.|+|+ |+|+|
T Consensus 380 --------G~S~vidp~G~i 391 (391)
T TIGR00546 380 --------GISAVIDPRGRT 391 (391)
T ss_pred --------ceeEEECCCCCC
Confidence 467788 99975
No 52
>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production []. They all have distinct substrate specificity and include cyanide hydratases, aliphatic amidases, beta-alanine synthase, and a few other proteins with unknown molecular function. Sequence conservation over the entire length, as well as the similarity in the reactions catalyzed by the known enzymes in this family, points to a common catalytic mechanism. They have an invariant cysteine that is part of the catalytic site in nitrilases. Another highly conserved motif includes an invariant glutamic acid that might also be involved in catalysis [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0006807 nitrogen compound metabolic process; PDB: 2E2L_D 2E2K_D 2DYV_A 2DYU_B 3KLC_B 3IW3_A 3KI8_A 3IVZ_A 1EMS_A 2GGK_B ....
Probab=99.54 E-value=7.8e-15 Score=138.88 Aligned_cols=93 Identities=25% Similarity=0.335 Sum_probs=77.7
Q ss_pred CeeeCCeeEEEEEEEe-CCeEEEEEecccCCCCCCCc-ccccccccCCCCcccccccchhhhhhccCceeeccceeEEeC
Q 009537 2 PVIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYR-ELRWFTAWKQKDQLEDFLLPHEISEALCQKSVPFGYGFIQFL 79 (532)
Q Consensus 2 Pv~~~g~~YN~avvi~-~GkIl~i~~K~hL~~~g~~~-E~R~Ftpg~~~~~~e~~~lp~~i~~~~~q~~vPfGd~v~~~~ 79 (532)
|...++++||+++++. +|++++.|+|+||.+++.|. |.+||.++.... ..|...+++++
T Consensus 92 ~~~~~~~~~N~~~~~~~~g~~~~~y~K~~lvpf~~~~P~~~~~~~g~~~~-------------------~~~~~~~~~~~ 152 (186)
T PF00795_consen 92 PERDDGGLYNSAVVIDPDGEILGRYRKIHLVPFGEYIPERRYFSPGGDPF-------------------PVFETPVFDFG 152 (186)
T ss_dssp EEEETTEEEEEEEEEETTSEEEEEEEGSSTCSTTTTTTHHHHSBEESSES-------------------EEEEETETEET
T ss_pred cccccccccceeEEEEeeecccccccceeeeccccccccceeeeecccee-------------------eeeecceeeec
Confidence 4567889999999998 68999999999999999999 999999983321 11212356778
Q ss_pred CccEEEeeecccCCCchHHHHHHhCCCeEEEEccC
Q 009537 80 DTAVAVEVCEELFTPIPPHADLALNGVEVFMNASG 114 (532)
Q Consensus 80 ~~~iG~eICeDlw~P~~~~~~lal~GaeIIlnpSa 114 (532)
|+|||+.||||+||| +..+.++.+|||||+||||
T Consensus 153 g~~ig~~ICyd~~fp-~~~~~~~~~ga~il~~~sa 186 (186)
T PF00795_consen 153 GGRIGVLICYDLRFP-ELVRELAKQGADILINPSA 186 (186)
T ss_dssp TEEEEEEEGGGGGSH-HHHHHHHHTTESEEEEEE-
T ss_pred cceEEEEEEcccCCh-HHHHHHHHCCCCEEEeCCC
Confidence 999999999999999 7888999999999999986
No 53
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=99.47 E-value=6.3e-14 Score=147.05 Aligned_cols=117 Identities=25% Similarity=0.341 Sum_probs=80.0
Q ss_pred CeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeCCCCC-----
Q 009537 263 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENS----- 337 (532)
Q Consensus 263 ~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~t~nS----- 337 (532)
+.++|+||||+|||++|+|+. + .|. .|+++||-....
T Consensus 1 ~kV~vamSGGVDSsvaA~LLk-------~---------------~G~----------------~V~Gv~m~~~~~~~~~~ 42 (356)
T PF03054_consen 1 KKVLVAMSGGVDSSVAAALLK-------E---------------QGY----------------DVIGVTMRNWDEEDESG 42 (356)
T ss_dssp -EEEEE--SSHHHHHHHHHHH-------H---------------CT-----------------EEEEEEEE-SS-SSSHH
T ss_pred CeEEEEccCCHHHHHHHHHHH-------h---------------hcc----------------cceEEEEEEeccccccC
Confidence 368999999999999999984 2 354 499999997765
Q ss_pred ----CHHHHHHHHHHHHHhCCceEEEechHHHHH-HHHHhhh--hhCCCCCCc------------ch-hh-hcCCCEeee
Q 009537 338 ----SQETRMRAKKLADEIGSWHLDVSIDTVVSA-FLSLFQT--LTGKRPRYK------------LD-EV-DMGMTYEEL 396 (532)
Q Consensus 338 ----s~~t~~~A~~LA~~iG~~h~~i~Id~~v~a-~~~~f~~--~~g~~p~~~------------tD-E~-dmGmtY~~L 396 (532)
+.++.++|+.+|+.||++|+.+|+.+.+.. +++.|.+ ..|+||||| .+ .. .+|.+|.++
T Consensus 43 ~~c~~~~d~~~a~~va~~LgIp~~v~d~~~~f~~~Vi~~f~~~Y~~G~TPNPcv~CN~~IKF~~l~~~a~~~~g~d~iAT 122 (356)
T PF03054_consen 43 KSCCSEEDIEDARRVAEKLGIPHYVVDLREEFWEEVIEPFLDEYRKGRTPNPCVLCNRFIKFGALLEYADEGLGADYIAT 122 (356)
T ss_dssp -HHHHHHHHHHHHHHHHHHT--EEEEETHHHHHHHTHHHHHHHHHTT----HHHHHHHHTTTTHHHHHHHTTTT-SEEE-
T ss_pred CCCCchhhHHHHHHHHHhcCCCEEEEChHHHHHHHHHHHHHHHHhcCCCCChHHhhchhhhHHHHHHHHHhhcCCCeecc
Confidence 346789999999999999999999998885 5677765 469999998 11 22 499999999
Q ss_pred ceeeEEEeecCCChHHHHHHH
Q 009537 397 SVYGRLRKIFHCGPVSMFKNL 417 (532)
Q Consensus 397 ~~~~rlr~~~~~gp~~m~~~L 417 (532)
+||+|+....+.|.+.+.+..
T Consensus 123 GHYAri~~~~~~~~~~L~r~~ 143 (356)
T PF03054_consen 123 GHYARIEKDEKNGRYRLLRGA 143 (356)
T ss_dssp --SEEEEEES-TTEEEEEE-S
T ss_pred ceeEEEEeeccCCceEEEecC
Confidence 999999998766777666553
No 54
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=1.1e-12 Score=136.37 Aligned_cols=108 Identities=25% Similarity=0.297 Sum_probs=88.6
Q ss_pred CCeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeCCCC-----
Q 009537 262 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSEN----- 336 (532)
Q Consensus 262 ~~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~t~n----- 336 (532)
...++++||||+|||++|+|+. + .|+ .|.+++|....
T Consensus 3 ~~kV~v~mSGGVDSSVaA~lLk-------~---------------QGy----------------eViGl~m~~~~~~~~~ 44 (356)
T COG0482 3 KKKVLVGMSGGVDSSVAAYLLK-------E---------------QGY----------------EVIGLFMKNWDEDGGG 44 (356)
T ss_pred CcEEEEEccCCHHHHHHHHHHH-------H---------------cCC----------------eEEEEEEEeeccCCCC
Confidence 4689999999999999999984 2 354 39999998654
Q ss_pred --CCHHHHHHHHHHHHHhCCceEEEechHHHHH-HHHHhhh--hhCCCCCCc-------------chhhhcCCCEeeece
Q 009537 337 --SSQETRMRAKKLADEIGSWHLDVSIDTVVSA-FLSLFQT--LTGKRPRYK-------------LDEVDMGMTYEELSV 398 (532)
Q Consensus 337 --Ss~~t~~~A~~LA~~iG~~h~~i~Id~~v~a-~~~~f~~--~~g~~p~~~-------------tDE~dmGmtY~~L~~ 398 (532)
++.++..+|+.+|++||++|+.+|+.+.+.. +...|.. ..|+||||| ....++|.+|.+++|
T Consensus 45 ~C~s~~d~~da~~va~~LGIp~~~vdf~~~y~~~V~~~f~~~Y~~G~TPNPci~CN~~iKF~~~l~~a~~lgad~iATGH 124 (356)
T COG0482 45 GCCSEEDLRDAERVADQLGIPLYVVDFEKEFWNKVFEYFLAEYKAGKTPNPCILCNKEIKFKALLDYAKELGADYIATGH 124 (356)
T ss_pred cCCchhHHHHHHHHHHHhCCceEEEchHHHHHHHHHHHHHHHHhCCCCCCcchhcCHHHHHHHHHHHHHHcCCCeEEEee
Confidence 6789999999999999999999999988775 4455554 459999999 112249999999999
Q ss_pred eeEEEeecC
Q 009537 399 YGRLRKIFH 407 (532)
Q Consensus 399 ~~rlr~~~~ 407 (532)
|+|++...+
T Consensus 125 Yar~~~~~~ 133 (356)
T COG0482 125 YARQREDEG 133 (356)
T ss_pred eEeeecCCc
Confidence 999987654
No 55
>PRK12291 apolipoprotein N-acyltransferase; Reviewed
Probab=99.33 E-value=6.1e-12 Score=135.32 Aligned_cols=113 Identities=11% Similarity=0.036 Sum_probs=89.4
Q ss_pred CCeeEEEEEEEeCCeEEEEEecccCCCCCCC----------------cccccccccCCCCcccccccchhhhhhccCcee
Q 009537 6 GSERYNCQVLCLNRKIIMIRPKLWLANDGNY----------------RELRWFTAWKQKDQLEDFLLPHEISEALCQKSV 69 (532)
Q Consensus 6 ~g~~YN~avvi~~GkIl~i~~K~hL~~~g~~----------------~E~R~Ftpg~~~~~~e~~~lp~~i~~~~~q~~v 69 (532)
+++.||+++++.+|+ +..|+|+||...|+| .|...|+||+..
T Consensus 276 ~~~~yNS~~vi~~G~-~~~Y~K~hLVPFGEyiP~~~~l~~~~~~~~~~~~~~f~~G~~~--------------------- 333 (418)
T PRK12291 276 DGHIYNSTYIFSKGN-VQIADKVILVPFGEEIPLPKFFKKPINKLFFGGASDFSKASKF--------------------- 333 (418)
T ss_pred CCceEEEEEEECCCC-cceecccCCCCCcccCccHHHHHhhhHHHhccCcccCCCCCCC---------------------
Confidence 457999999998887 789999999877753 455677777554
Q ss_pred eccceeEEeCCccEEEeeecccCCCchHHHHHHhCCCeEEEEccCCCccCCc--HHHHHHHHHHHHHHhCCeEEEEcCCc
Q 009537 70 PFGYGFIQFLDTAVAVEVCEELFTPIPPHADLALNGVEVFMNASGSHHQLRK--LDYRIRAFISATHSRGGVYMYSNQQG 147 (532)
Q Consensus 70 PfGd~v~~~~~~~iG~eICeDlw~P~~~~~~lal~GaeIIlnpSaS~~~~~k--~~~r~~li~~~a~~~g~~yvyaN~~G 147 (532)
.++++++.|+|+.||||.++| +..+ +|+|+++|+|+..+--.. ..++..+++.||.|+|.+++-+...|
T Consensus 334 ----~~~~~~g~~ig~lICYE~~Fp-el~r----~ga~~Lv~iSNdaWfg~s~~p~~~~~~~r~RAiE~g~pvvratNtG 404 (418)
T PRK12291 334 ----SDFTLDGVKFRNAICYEATSE-ELYE----GNPKIVIAISNNAWFVPSIEPTLQKLLLKYYARKYGKTIYHSANGS 404 (418)
T ss_pred ----cceeeCCeEEEEEEeeeecch-Hhhc----cCCCEEEEecccccCCCChhHHHHHHHHHHHHHHhCCcEEEEcCCc
Confidence 367888999999999999999 4433 899999999986553222 24556778889999999999998877
Q ss_pred CC
Q 009537 148 CD 149 (532)
Q Consensus 148 ~d 149 (532)
.+
T Consensus 405 iS 406 (418)
T PRK12291 405 PS 406 (418)
T ss_pred ee
Confidence 54
No 56
>PRK13825 conjugal transfer protein TraB; Provisional
Probab=99.07 E-value=9.2e-10 Score=117.38 Aligned_cols=115 Identities=9% Similarity=-0.085 Sum_probs=83.5
Q ss_pred eCCeeEEEEEEEeCCeEEEEEecccCCCCCCCc-------ccccccccCCCCcccccccchhhhhhccCceeeccceeEE
Q 009537 5 KGSERYNCQVLCLNRKIIMIRPKLWLANDGNYR-------ELRWFTAWKQKDQLEDFLLPHEISEALCQKSVPFGYGFIQ 77 (532)
Q Consensus 5 ~~g~~YN~avvi~~GkIl~i~~K~hL~~~g~~~-------E~R~Ftpg~~~~~~e~~~lp~~i~~~~~q~~vPfGd~v~~ 77 (532)
.++++||+++++++++....|+|+||...|+|. |..+|+++.. |+.+++
T Consensus 263 ~~~~~yNsa~v~~~~G~~~~Y~K~~LvPfgE~~P~~~~~~e~~~~~~g~~------------------------~~~vf~ 318 (388)
T PRK13825 263 DPGGYDNVLVAISAGGGRILYRERMPVPVSMWQPWRPWTGQGGGARAHFF------------------------ANPVVE 318 (388)
T ss_pred CCCCceEEEEEEeCCCCeeeEeeeeCcCccccCchHHhhccccCCCCCCC------------------------CCCcee
Confidence 457799999999864445599999987666532 4444443321 234788
Q ss_pred eCCccEEEeeecccCCCchHHHHHHhCCCeEEEEccCCCccCCcH--HHHHHHHHHHHHHhCCeEEEEc
Q 009537 78 FLDTAVAVEVCEELFTPIPPHADLALNGVEVFMNASGSHHQLRKL--DYRIRAFISATHSRGGVYMYSN 144 (532)
Q Consensus 78 ~~~~~iG~eICeDlw~P~~~~~~lal~GaeIIlnpSaS~~~~~k~--~~r~~li~~~a~~~g~~yvyaN 144 (532)
+++.|+|+.||||.++| .|.....++|+|+|+++|+.-+.-+.. .+...+++.+|+++|.+++.+.
T Consensus 319 l~g~rvg~lICYE~~F~-~pel~~~~~GadlLv~~SNd~Wf~~s~~p~~q~~~~~~rA~e~g~plvrA~ 386 (388)
T PRK13825 319 IDGRRAAPLICYEQLLV-WPVLQSMLHSPDVIVAVGNGWWTKGTSIVAIQRASAEAWARLFGVPLVRAF 386 (388)
T ss_pred eCCeEEEEEEeeeecCc-HHHHHhhccCCCEEEEecCchhcCCCcHHHHHHHHHHHHHHHhCCCEEEec
Confidence 99999999999999986 333344489999999999875543432 3445788999999999988774
No 57
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=99.02 E-value=1.5e-09 Score=114.69 Aligned_cols=104 Identities=26% Similarity=0.312 Sum_probs=80.4
Q ss_pred CeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeCCCC--CCHH
Q 009537 263 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSEN--SSQE 340 (532)
Q Consensus 263 ~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~t~n--Ss~~ 340 (532)
.+++|+||||+||+++|+|+. + .+. .+++++|.... .+.+
T Consensus 6 ~kVlValSGGVDSsvaa~LL~-------~---------------~G~----------------~V~~v~~~~~~~~~~~~ 47 (360)
T PRK14665 6 KRVLLGMSGGTDSSVAAMLLL-------E---------------AGY----------------EVTGVTFRFYEFNGSTE 47 (360)
T ss_pred CEEEEEEcCCHHHHHHHHHHH-------H---------------cCC----------------eEEEEEEecCCCCCChH
Confidence 689999999999999999874 2 232 38899997543 3567
Q ss_pred HHHHHHHHHHHhCCceEEEechHHHHH-HHHHhhh--hhCCCCCCc------------ch-hhhcCCCEeeeceeeEEEe
Q 009537 341 TRMRAKKLADEIGSWHLDVSIDTVVSA-FLSLFQT--LTGKRPRYK------------LD-EVDMGMTYEELSVYGRLRK 404 (532)
Q Consensus 341 t~~~A~~LA~~iG~~h~~i~Id~~v~a-~~~~f~~--~~g~~p~~~------------tD-E~dmGmtY~~L~~~~rlr~ 404 (532)
+.++|+++|+.+|++|+.+|+++.+.. +...|.+ ..|.+|++| .+ ..++|.+|..++||.|...
T Consensus 48 d~~~a~~va~~LgIp~~vvd~~~~f~~~v~~~f~~~y~~g~tpnpC~~Cnr~ikf~~l~~~A~~~G~~~IATGHya~~~~ 127 (360)
T PRK14665 48 YLEDARALAERLGIGHITYDARKVFRKQIIDYFIDEYMSGHTPVPCTLCNNYLKWPLLAKIADEMGIFYLATGHYVRKQW 127 (360)
T ss_pred HHHHHHHHHHHhCCCEEEEecHHHHHHHHHhhhhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccceec
Confidence 899999999999999999999876654 3344443 348999988 22 2259999999999998643
No 58
>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=2.2e-09 Score=108.86 Aligned_cols=104 Identities=19% Similarity=0.256 Sum_probs=79.9
Q ss_pred CCeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeCCCC-----
Q 009537 262 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSEN----- 336 (532)
Q Consensus 262 ~~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~t~n----- 336 (532)
...++++||||+|||+.|.|++. -|. .++++||..+.
T Consensus 5 ~~~VvvamSgGVDSsVaa~Ll~~----------------------~g~----------------~v~gv~M~nWd~~de~ 46 (377)
T KOG2805|consen 5 PDRVVVAMSGGVDSSVAARLLAA----------------------RGY----------------NVTGVFMKNWDSLDEF 46 (377)
T ss_pred cceEEEEecCCchHHHHHHHHHh----------------------cCC----------------CeeEEeeecccccccc
Confidence 46899999999999999999852 243 49999997543
Q ss_pred ----CCHHHHHHHHHHHHHhCCceEEEechHHHHHHHHHhhh-----hhCCCCCCc--------------chhhhcCCCE
Q 009537 337 ----SSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQT-----LTGKRPRYK--------------LDEVDMGMTY 393 (532)
Q Consensus 337 ----Ss~~t~~~A~~LA~~iG~~h~~i~Id~~v~a~~~~f~~-----~~g~~p~~~--------------tDE~dmGmtY 393 (532)
+-+.+..+|+.+|++|+++++.+|....+= ...|+. ..|+||++. -.+++||.+|
T Consensus 47 ~s~cp~e~D~~da~~Vc~~LnI~~~~Vnf~kEYW--~~Vfs~~L~~Y~~G~TPNPDI~CN~~IKFg~~~~~a~en~~~d~ 124 (377)
T KOG2805|consen 47 GSQCPAERDWKDAKRVCKQLNIPLHQVNFVKEYW--NDVFSPFLEEYENGRTPNPDILCNKHIKFGKFFKHAIENLGYDW 124 (377)
T ss_pred ccCCCchhhHHHHHHHHHHhCCeeEEEeeHHHHH--HHHHHHHHHHHhcCCCCCCCccccceeeccHHHHHHHHhcCCCe
Confidence 346788999999999999999999843221 223332 259999997 2245899999
Q ss_pred eeeceeeEEEee
Q 009537 394 EELSVYGRLRKI 405 (532)
Q Consensus 394 ~~L~~~~rlr~~ 405 (532)
..++||+|.-..
T Consensus 125 latGHYAr~~~~ 136 (377)
T KOG2805|consen 125 LATGHYARVVLE 136 (377)
T ss_pred EEeeeeeeeecC
Confidence 999999997543
No 59
>KOG0805 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=99.00 E-value=1.8e-09 Score=106.15 Aligned_cols=157 Identities=15% Similarity=0.176 Sum_probs=119.7
Q ss_pred eCCeeEEEEEEEe-CCeEEEEEecccCCCCCCCcccccccccCCCCcccccccchhhhhhccCceeeccceeEEeCCccE
Q 009537 5 KGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFLLPHEISEALCQKSVPFGYGFIQFLDTAV 83 (532)
Q Consensus 5 ~~g~~YN~avvi~-~GkIl~i~~K~hL~~~g~~~E~R~Ftpg~~~~~~e~~~lp~~i~~~~~q~~vPfGd~v~~~~~~~i 83 (532)
.+-.+|-+++++. .|..+|.+||+ +|.. -|.-.+-.| .+.|+| ||+|+-++|
T Consensus 122 eg~TLYCt~~f~~p~g~~lGKHRKl-mPTa---lERciWGqG-------------------DGSTiP----V~dT~iGKI 174 (337)
T KOG0805|consen 122 EGYTLYCTVLFFSPQGQFLGKHRKL-MPTA---LERCIWGQG-------------------DGSTIP----VYDTPIGKI 174 (337)
T ss_pred cccEEEEEEEEECCCcccccccccc-ccch---hhheeeccC-------------------CCcccc----eeecccchh
Confidence 3446787778787 68899999997 5543 243333223 234555 899999999
Q ss_pred EEeeecccCCCchHHHHHHhCCCeEEEEccCCCccCCcHHHHHHHHHHHHHHhCCeEEEEcCCcCC--------------
Q 009537 84 AVEVCEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGCD-------------- 149 (532)
Q Consensus 84 G~eICeDlw~P~~~~~~lal~GaeIIlnpSaS~~~~~k~~~r~~li~~~a~~~g~~yvyaN~~G~d-------------- 149 (532)
|..||+|-+.| .....|..+|+||.+.|.+.. ...|..-++..|.+-+|+++.++|.=.+
T Consensus 175 G~AICWEN~MP-l~R~alY~KgieIycAPT~D~-----r~~w~~sM~~IAlEG~cFvlSA~QF~k~~d~p~~peyl~~~~ 248 (337)
T KOG0805|consen 175 GAAICWENRMP-LYRTALYAKGIEIYCAPTADG-----RKEWQSSMLHIALEGGCFVLSACQFCKRKDFPDHPDYLFTDW 248 (337)
T ss_pred ceeeecccccH-HHHHHHHhcCcEEEeccCCCC-----cHHHHHhhhheeecCceEEEEhhhhcccccCCCCchhhcccc
Confidence 99999999999 566678899999999998743 3567888899999999999999983110
Q ss_pred -----CCceeeeccEEEE-eCCcEEEecCCCCcCceeEEEEEEecchhhhhhcc
Q 009537 150 -----GGRLYFDGCSCVV-VNGDMIAQGSQFSLRDVEVVVAQVDLDAVAGFRGS 197 (532)
Q Consensus 150 -----g~~l~fdG~S~I~-~nG~ilaq~~~f~~~d~evi~a~VDl~~vr~~R~~ 197 (532)
.+..+-.|+|+|+ |-|+|+|. +.|.. +.+++|++||.++...|..
T Consensus 249 ~~~k~pD~vv~~GGSviI~PlG~Vlag-P~~~~--EgL~tadldl~dIA~ak~d 299 (337)
T KOG0805|consen 249 YDDKEPDSVVSQGGSVIISPLGQVLAG-PNFES--EGLITADLDLGDIARAKLD 299 (337)
T ss_pred hhccCCCcceecCCcEEEccccceecC-CCcCc--cceEEEeccchhhhhhccc
Confidence 2455678999999 99999975 55653 5899999999999866643
No 60
>COG0815 Lnt Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.96 E-value=5.4e-09 Score=115.25 Aligned_cols=152 Identities=20% Similarity=0.148 Sum_probs=107.0
Q ss_pred eeEEEEEEEeC-CeEEEEEecccCCCCCCCcccccccccCCCCcccccccchhhhhhccCceeec--cc--eeEEeC-Cc
Q 009537 8 ERYNCQVLCLN-RKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFLLPHEISEALCQKSVPF--GY--GFIQFL-DT 81 (532)
Q Consensus 8 ~~YN~avvi~~-GkIl~i~~K~hL~~~g~~~E~R~Ftpg~~~~~~e~~~lp~~i~~~~~q~~vPf--Gd--~v~~~~-~~ 81 (532)
..||+++++.+ |++..+|.|.||-..|+|---..+-++-. ..+.+| ..+| |+ .++.+. +.
T Consensus 319 ~yyNSv~~~~~~~~~~~~ydK~~LVPFGEYiP~~~~l~~~~----~~~~~~----------~~~f~~G~~~~v~~~~~~~ 384 (518)
T COG0815 319 IYYNSVLVLDPGGEGVYRYDKVHLVPFGEYIPFPELLRPLY----FFLNLP----------MSDFSRGPGPQVLLLAGGP 384 (518)
T ss_pred ceeeEEEEecCCCCccccccceeeeCCccccchHHHHHHHh----hhhccc----------cccccCCCCCcceecCCCc
Confidence 37999999985 59999999999998887633222221111 111111 1222 22 345554 46
Q ss_pred cEEEeeecccCCCchHHHHHHhCCCeEEEEccCCCccCC--cHHHHHHHHHHHHHHhCCeEEEEcCCcCCCCceeeeccE
Q 009537 82 AVAVEVCEELFTPIPPHADLALNGVEVFMNASGSHHQLR--KLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCS 159 (532)
Q Consensus 82 ~iG~eICeDlw~P~~~~~~lal~GaeIIlnpSaS~~~~~--k~~~r~~li~~~a~~~g~~yvyaN~~G~dg~~l~fdG~S 159 (532)
+++..||||.=|| +..|....+|||+|+|+|+..+--. -..+...+.+.||.|+|.+.+-+...|. |
T Consensus 385 ~~~~~ICYE~~F~-~~~r~~~~qga~~Lin~SNDAWf~~s~~p~QH~~~a~~RAiE~grp~iRAtNtGi----------S 453 (518)
T COG0815 385 KIAPLICYEAIFP-ELVRASARQGAELLLNLSNDAWFGGSWGPYQHFQQARVRAVELGRPLVRATNTGI----------S 453 (518)
T ss_pred eeeceeeehhhch-HHHHHhhcCCCcEEEEcccccccCCCcchHHHHHHHHHHHHhcCCcEEEEcCCcc----------e
Confidence 7999999999999 6788999999999999997644222 2334456678999999999998877664 4
Q ss_pred EEE-eCCcEEEecCCCCcCceeEEEEEEe
Q 009537 160 CVV-VNGDMIAQGSQFSLRDVEVVVAQVD 187 (532)
Q Consensus 160 ~I~-~nG~ilaq~~~f~~~d~evi~a~VD 187 (532)
.|+ |.|+++++.+.|+. +++.++|-
T Consensus 454 avIdp~Gri~~~l~~~~~---~~l~~~v~ 479 (518)
T COG0815 454 AVIDPRGRILAQLPYFTR---GVLDATVP 479 (518)
T ss_pred EEECCCCCEEeecCCCCc---ceeeeeec
Confidence 566 99999999999874 45555543
No 61
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=98.92 E-value=5.6e-09 Score=110.34 Aligned_cols=101 Identities=22% Similarity=0.307 Sum_probs=77.0
Q ss_pred CCeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeCCCCCCHHH
Q 009537 262 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQET 341 (532)
Q Consensus 262 ~~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~t~nSs~~t 341 (532)
.++++|++|||+||+++|+++. . .+. .+++++|.... ++
T Consensus 5 ~~kVlVa~SGGvDSsv~a~lL~--------~--------------~G~----------------eV~av~~~~~~---~e 43 (362)
T PRK14664 5 KKRVLVGMSGGIDSTATCLMLQ--------E--------------QGY----------------EIVGVTMRVWG---DE 43 (362)
T ss_pred CCEEEEEEeCCHHHHHHHHHHH--------H--------------cCC----------------cEEEEEecCcc---hh
Confidence 3689999999999999988763 1 232 38999997542 34
Q ss_pred HHHHHHHHHHhCCceEEEechHHHH-HHHHHhhh--hhCCCCCCc------------ch-hhhcCCCEeeeceeeEEE
Q 009537 342 RMRAKKLADEIGSWHLDVSIDTVVS-AFLSLFQT--LTGKRPRYK------------LD-EVDMGMTYEELSVYGRLR 403 (532)
Q Consensus 342 ~~~A~~LA~~iG~~h~~i~Id~~v~-a~~~~f~~--~~g~~p~~~------------tD-E~dmGmtY~~L~~~~rlr 403 (532)
.++|+++|+.+|++|+.+|++..+. .++..|.. ..|++|++| .+ ..++|.+|.+++||+|+.
T Consensus 44 ~~~a~~va~~LGI~~~vvd~~~~f~~~v~~~~~~~~~~G~tpnpC~~Cn~~iKf~~L~~~A~~~G~~~IATGHyar~~ 121 (362)
T PRK14664 44 PQDARELAARMGIEHYVADERVPFKDTIVKNFIDEYRQGRTPNPCVMCNPLFKFRMLIEWADKLGCAWIATGHYSRLE 121 (362)
T ss_pred HHHHHHHHHHhCCCEEEEeChHHHHHHHHHHhHHHHHcCCCCCCchhhhHHHHHHHHHHHHHHcCCCEEEECCccccc
Confidence 5689999999999999999987655 34443332 458999998 11 136999999999999764
No 62
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=98.85 E-value=1.9e-08 Score=106.21 Aligned_cols=102 Identities=24% Similarity=0.305 Sum_probs=77.0
Q ss_pred eEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeCCC-------C
Q 009537 264 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSE-------N 336 (532)
Q Consensus 264 g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~t~-------n 336 (532)
.++|+||||+||+++|+|+. + .+. .+++++|... .
T Consensus 2 kVlValSGGvDSsv~a~lL~-------~---------------~G~----------------~V~~v~~~~~~~~~~~~~ 43 (352)
T TIGR00420 2 KVIVGLSGGVDSSVSAYLLK-------Q---------------QGY----------------EVVGVFMKNWEEDDKNDG 43 (352)
T ss_pred eEEEEEeCCHHHHHHHHHHH-------H---------------cCC----------------eEEEEEEEcccccccccc
Confidence 68999999999999999874 2 232 3889999421 1
Q ss_pred ---CCHHHHHHHHHHHHHhCCceEEEechHHHH-HHHHHhhh--hhCCCCCCc------------chh-hhc-CCCEeee
Q 009537 337 ---SSQETRMRAKKLADEIGSWHLDVSIDTVVS-AFLSLFQT--LTGKRPRYK------------LDE-VDM-GMTYEEL 396 (532)
Q Consensus 337 ---Ss~~t~~~A~~LA~~iG~~h~~i~Id~~v~-a~~~~f~~--~~g~~p~~~------------tDE-~dm-GmtY~~L 396 (532)
.+.++.++|+++|+.+|++|+.+++++.+. .+...|.+ ..|.+|++| .+. .++ |.+|..+
T Consensus 44 ~~c~~~~~~~~a~~va~~lgIp~~vid~~~~f~~~v~~~~~~~y~~g~tpnpC~~Cnr~iKf~~l~~~a~~~~G~~~IAT 123 (352)
T TIGR00420 44 HGCTSAEDLRDAQAICEKLGIPLEKVNFQKEYWNKVFEPFIQEYKEGRTPNPDILCNKFIKFGAFLEYAAELLGNDKIAT 123 (352)
T ss_pred cCcCCHHHHHHHHHHHHHcCCCEEEEECHHHHHHHHHHHHHHHHHcCCCCCcchhhhHHHHHHHHHHHHHHHcCCCEEEE
Confidence 356788999999999999999999987664 34444443 358999988 121 244 9999999
Q ss_pred ceeeEEE
Q 009537 397 SVYGRLR 403 (532)
Q Consensus 397 ~~~~rlr 403 (532)
+||++..
T Consensus 124 GHya~~~ 130 (352)
T TIGR00420 124 GHYARIA 130 (352)
T ss_pred CCcceEe
Confidence 9999764
No 63
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=98.79 E-value=3.9e-08 Score=103.58 Aligned_cols=102 Identities=27% Similarity=0.430 Sum_probs=77.1
Q ss_pred eEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeCCCC-------
Q 009537 264 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSEN------- 336 (532)
Q Consensus 264 g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~t~n------- 336 (532)
.++|+||||+||+++|+++. + .+. .+++++|....
T Consensus 2 kVlValSGGvDSsvla~lL~-------~---------------~G~----------------~V~~v~~~~~~~~~~~~~ 43 (346)
T PRK00143 2 RVVVGMSGGVDSSVAAALLK-------E---------------QGY----------------EVIGVFMKLWDDDDETGK 43 (346)
T ss_pred eEEEEecCCHHHHHHHHHHH-------H---------------cCC----------------cEEEEEEeCCCccccccc
Confidence 68999999999999988873 1 232 27888887532
Q ss_pred ---CCHHHHHHHHHHHHHhCCceEEEechHHHHH-HHHHhhh--hhCCCCCCc------------ch-hhhcCCCEeeec
Q 009537 337 ---SSQETRMRAKKLADEIGSWHLDVSIDTVVSA-FLSLFQT--LTGKRPRYK------------LD-EVDMGMTYEELS 397 (532)
Q Consensus 337 ---Ss~~t~~~A~~LA~~iG~~h~~i~Id~~v~a-~~~~f~~--~~g~~p~~~------------tD-E~dmGmtY~~L~ 397 (532)
++.++.+.|+++|+.+|++|+.+++.+.+.. +...|.. ..|.+|++| .+ -.++|.+|..++
T Consensus 44 ~~~~s~~d~~~a~~~a~~LgIp~~vvd~~~~f~~~vi~~~~~~~~~g~tpnpc~~C~r~ik~~~l~~~A~~~g~~~IATG 123 (346)
T PRK00143 44 GGCCAEEDIADARRVADKLGIPHYVVDFEKEFWDRVIDYFLDEYKAGRTPNPCVLCNKEIKFKAFLEYARELGADYIATG 123 (346)
T ss_pred CCcCcHHHHHHHHHHHHHcCCcEEEEeCHHHHHHHHHHHHHHHHHcCCCCCcChhhhHHHHHHHHHHHHHHCCCCEEEee
Confidence 2577889999999999999999999876542 3333332 358999988 11 236899999999
Q ss_pred eeeEEE
Q 009537 398 VYGRLR 403 (532)
Q Consensus 398 ~~~rlr 403 (532)
||++..
T Consensus 124 H~a~d~ 129 (346)
T PRK00143 124 HYARIR 129 (346)
T ss_pred eecccc
Confidence 999753
No 64
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=98.78 E-value=4.3e-08 Score=103.38 Aligned_cols=103 Identities=27% Similarity=0.406 Sum_probs=77.3
Q ss_pred eEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeCCCC-------
Q 009537 264 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSEN------- 336 (532)
Q Consensus 264 g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~t~n------- 336 (532)
.++|+||||+||+++|+++. + .+. .+++++|.+..
T Consensus 1 kVlValSGGvDSsvla~lL~-------~---------------~g~----------------~v~~v~i~~~~~~~~~~~ 42 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALLK-------E---------------QGY----------------EVIGVFMKNWDEDDGKGG 42 (349)
T ss_pred CEEEEecCCHHHHHHHHHHH-------H---------------cCC----------------cEEEEEEecccccccccC
Confidence 37899999999999988873 1 232 37888886542
Q ss_pred -CCHHHHHHHHHHHHHhCCceEEEechHHHH-HHHHHhhh--hhCCCCCCc------------c-hhhhcCCCEeeecee
Q 009537 337 -SSQETRMRAKKLADEIGSWHLDVSIDTVVS-AFLSLFQT--LTGKRPRYK------------L-DEVDMGMTYEELSVY 399 (532)
Q Consensus 337 -Ss~~t~~~A~~LA~~iG~~h~~i~Id~~v~-a~~~~f~~--~~g~~p~~~------------t-DE~dmGmtY~~L~~~ 399 (532)
.+.++.++|+++|+.+|++|+.+++++.+. .+...|.. ..|.+|++| . -..++|.+|..++||
T Consensus 43 ~~s~~d~~~a~~va~~lgI~~~vvd~~~~f~~~v~~~~i~~~~~g~tpnpc~~C~r~ikf~~l~~~A~~~g~~~IatGHy 122 (349)
T cd01998 43 CCSEEDLKDARRVADQLGIPHYVVNFEKEYWEKVFEPFLEEYKKGRTPNPDILCNKEIKFGALLDYAKKLGADYIATGHY 122 (349)
T ss_pred CCCHHHHHHHHHHHHHhCCcEEEEECcHHHHHHHHHHHHHHHHcCCCCCchHhhhhHHHHHHHHHHHHHcCcCEEEECCc
Confidence 356788999999999999999999986554 23333332 358899988 1 123689999999999
Q ss_pred eEEEe
Q 009537 400 GRLRK 404 (532)
Q Consensus 400 ~rlr~ 404 (532)
++...
T Consensus 123 a~d~~ 127 (349)
T cd01998 123 ARIEE 127 (349)
T ss_pred CCeee
Confidence 88654
No 65
>PRK00509 argininosuccinate synthase; Provisional
Probab=98.59 E-value=7.2e-07 Score=95.38 Aligned_cols=101 Identities=15% Similarity=0.142 Sum_probs=76.1
Q ss_pred CCeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeCCCCCCHHH
Q 009537 262 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQET 341 (532)
Q Consensus 262 ~~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~t~nSs~~t 341 (532)
.++++|++|||+||+++|.++. +. ++. .++++++.+... ++
T Consensus 2 ~~kVvva~SGGlDSsvla~~l~-------e~--------------lG~----------------eViavt~d~Gq~--~d 42 (399)
T PRK00509 2 KKKVVLAYSGGLDTSVIIKWLK-------ET--------------YGC----------------EVIAFTADVGQG--EE 42 (399)
T ss_pred CCeEEEEEcCCHHHHHHHHHHH-------Hh--------------hCC----------------eEEEEEEecCCH--HH
Confidence 4689999999999999988773 22 342 388998887654 68
Q ss_pred HHHHHHHHHHhCC-ceEEEechHHHH-HHHHH-hhh---hhCCCCCCc-----------ch-hhhcCCCEeeeceeeE
Q 009537 342 RMRAKKLADEIGS-WHLDVSIDTVVS-AFLSL-FQT---LTGKRPRYK-----------LD-EVDMGMTYEELSVYGR 401 (532)
Q Consensus 342 ~~~A~~LA~~iG~-~h~~i~Id~~v~-a~~~~-f~~---~~g~~p~~~-----------tD-E~dmGmtY~~L~~~~r 401 (532)
.+.|+++|+.+|+ .|+.+|+.+.+. .++.. +.. ..|++|+++ .+ ..++|++|...++.++
T Consensus 43 le~a~~~A~~lGi~~~~viD~~~ef~~~~i~~~i~~n~~y~g~ypl~~~lcr~~i~~~l~~~A~~~G~~~IA~G~t~k 120 (399)
T PRK00509 43 LEPIREKALKSGASEIYVEDLREEFVRDYVFPAIRANALYEGKYPLGTALARPLIAKKLVEIARKEGADAVAHGCTGK 120 (399)
T ss_pred HHHHHHHHHHcCCCeEEEEcCHHHHHHHhHHHHHHhChHhcCcCCCchHHHHHHHHHHHHHHHHHcCCCEEEeCCCcC
Confidence 9999999999998 678889996654 34333 222 248999998 22 2368999999999986
No 66
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=98.57 E-value=2e-07 Score=92.88 Aligned_cols=74 Identities=24% Similarity=0.312 Sum_probs=62.4
Q ss_pred HHHHHHHhCCCeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEe
Q 009537 253 LWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFM 332 (532)
Q Consensus 253 L~dylrrs~~~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m 332 (532)
|..|++.-+ +++|++|||+|||++|.+++ ++ +| + ++.+|+.
T Consensus 10 l~~~ik~~~--kv~vAfSGGvDSslLa~la~-------~~--------------lG-~---------------~v~AvTv 50 (269)
T COG1606 10 LKKAIKEKK--KVVVAFSGGVDSSLLAKLAK-------EA--------------LG-D---------------NVVAVTV 50 (269)
T ss_pred HHHHHhhcC--eEEEEecCCccHHHHHHHHH-------HH--------------hc-c---------------ceEEEEE
Confidence 556666554 99999999999999999884 55 45 4 4788888
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCceEEEechHHH
Q 009537 333 GSENSSQETRMRAKKLADEIGSWHLDVSIDTVV 365 (532)
Q Consensus 333 ~t~nSs~~t~~~A~~LA~~iG~~h~~i~Id~~v 365 (532)
-|.......++.|+.+|++||+.|..++++.+-
T Consensus 51 ~sP~~p~~e~e~A~~~A~~iGi~H~~i~~~~~~ 83 (269)
T COG1606 51 DSPYIPRREIEEAKNIAKEIGIRHEFIKMNRMD 83 (269)
T ss_pred ecCCCChhhhhHHHHHHHHhCCcceeeehhhcc
Confidence 888899999999999999999999999997543
No 67
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=98.56 E-value=3.2e-07 Score=92.52 Aligned_cols=102 Identities=25% Similarity=0.255 Sum_probs=74.6
Q ss_pred HHHHHHHHhCCCeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEE
Q 009537 252 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVF 331 (532)
Q Consensus 252 ~L~dylrrs~~~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~ 331 (532)
-|.++|+.. ++++|++|||+||+++|+++. + .+ . .+++++
T Consensus 4 ~l~~~l~~~--~~vlVa~SGGvDSs~ll~la~-------~---------------~g-~---------------~v~av~ 43 (252)
T TIGR00268 4 NLRNFLKEF--KKVLIAYSGGVDSSLLAAVCS-------D---------------AG-T---------------EVLAIT 43 (252)
T ss_pred HHHHHHHhc--CCEEEEecCcHHHHHHHHHHH-------H---------------hC-C---------------CEEEEE
Confidence 366777774 689999999999999988873 1 22 2 378888
Q ss_pred eCCCCCCHHHHHHHHHHHHHhCCceEEEechHHHHHHHHHhhhhhCCCCCCc------------chhhhcCCCEeeecee
Q 009537 332 MGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPRYK------------LDEVDMGMTYEELSVY 399 (532)
Q Consensus 332 m~t~nSs~~t~~~A~~LA~~iG~~h~~i~Id~~v~a~~~~f~~~~g~~p~~~------------tDE~dmGmtY~~L~~~ 399 (532)
+.+...+.++.+.|+++|+.+|+.|+.++++.+.+.+ . ...|+.| .-..+.|.++..+++.
T Consensus 44 ~~~~~~~~~e~~~a~~~a~~lgi~~~ii~~~~~~~~~----~---~n~~~~c~~ck~~~~~~l~~~A~~~g~~~I~~G~n 116 (252)
T TIGR00268 44 VVSPSISPRELEDAIIIAKEIGVNHEFVKIDKMINPF----R---ANVEERCYFCKKMVLSILVKEAEKRGYDVVVDGTN 116 (252)
T ss_pred ecCCCCCHHHHHHHHHHHHHcCCCEEEEEcHHHHHHH----H---hCCCcccchhhHHHHHHHHHHHHHcCCCEEEECCC
Confidence 8876677888999999999999999999998754432 1 1223333 1123578888888875
Q ss_pred e
Q 009537 400 G 400 (532)
Q Consensus 400 ~ 400 (532)
.
T Consensus 117 ~ 117 (252)
T TIGR00268 117 A 117 (252)
T ss_pred C
Confidence 4
No 68
>PRK02628 nadE NAD synthetase; Reviewed
Probab=98.47 E-value=4.1e-08 Score=111.89 Aligned_cols=81 Identities=14% Similarity=0.117 Sum_probs=75.5
Q ss_pred cchhhhcCCCEeeeceeeEEEeecCCChHHHHHHHHHhhCC---------------CCChHHHHHHHHHHHHHHhhcccC
Q 009537 383 KLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGA---------------RLTPSEVAEKVKHFFKYYSINRHK 447 (532)
Q Consensus 383 ~tDE~dmGmtY~~L~~~~rlr~~~~~gp~~m~~~L~~~w~~---------------~~~~~~i~~kVk~ff~~~~~nrhK 447 (532)
++||++|| ||+.||.|++.....+.+|.+++.++.+.|++ .|++++|..+++.||+++.+||||
T Consensus 558 q~ded~lg-pY~~~D~~l~~~~~~~~~~~~i~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~f~~~~~~~qfK 636 (679)
T PRK02628 558 QSTEDIIG-PYELQDFFLYYFLRYGFRPSKIAFLAWHAWKDAERGAWPGFPEDKRPAYDLATIKKWLEVFLRRFFSSQFK 636 (679)
T ss_pred CcchhccC-CHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhccccccCCCCcchhcccCCHHHHHHHHHHHcchhchHhhC
Confidence 38999998 99999999999888899999999999999976 799999999999999999999999
Q ss_pred cCcCCccccccc-CCCCC
Q 009537 448 MTVLTPSYHAES-YSPED 464 (532)
Q Consensus 448 r~~~~Ps~h~e~-ys~dd 464 (532)
|.++||++|+.+ .|++-
T Consensus 637 R~~~p~g~kv~~~~~ls~ 654 (679)
T PRK02628 637 RSALPNGPKVGSGGSLSP 654 (679)
T ss_pred cccCCCCCeeCCCCCCCC
Confidence 999999999999 88554
No 69
>PRK04527 argininosuccinate synthase; Provisional
Probab=98.46 E-value=9.3e-07 Score=94.39 Aligned_cols=101 Identities=25% Similarity=0.311 Sum_probs=79.3
Q ss_pred CeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeCCCCCCHHHH
Q 009537 263 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 342 (532)
Q Consensus 263 ~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~t~nSs~~t~ 342 (532)
++++|++|||+|||++|.++. . .+. .++++++.+...+.++.
T Consensus 3 ~kVvVA~SGGvDSSvla~~l~--------e--------------~G~----------------~Viavt~d~gq~~~~El 44 (400)
T PRK04527 3 KDIVLAFSGGLDTSFCIPYLQ--------E--------------RGY----------------AVHTVFADTGGVDAEER 44 (400)
T ss_pred CcEEEEEcCChHHHHHHHHHH--------H--------------cCC----------------cEEEEEEEeCCCCHHHH
Confidence 579999999999999988763 1 332 38999998877667899
Q ss_pred HHHHHHHHHhCC-ceEEEechHHHHH-HHHHhhh----hhCCCCCCc----------ch-hhhcCCCEeeeceeeE
Q 009537 343 MRAKKLADEIGS-WHLDVSIDTVVSA-FLSLFQT----LTGKRPRYK----------LD-EVDMGMTYEELSVYGR 401 (532)
Q Consensus 343 ~~A~~LA~~iG~-~h~~i~Id~~v~a-~~~~f~~----~~g~~p~~~----------tD-E~dmGmtY~~L~~~~r 401 (532)
++|+++|+.+|+ .|+.+|+++.+.. ++..|-+ .-|++|+.+ .+ ..++|.+|...+.-++
T Consensus 45 ~~a~~~A~~lG~~~~~viD~~eef~e~vi~p~i~aNa~y~G~yPl~~~nR~~~~~~l~e~A~~~G~~~IA~G~tgk 120 (400)
T PRK04527 45 DFIEKRAAELGAASHVTVDGGPAIWEGFVKPLVWAGEGYQGQYPLLVSDRYLIVDAALKRAEELGTRIIAHGCTGM 120 (400)
T ss_pred HHHHHHHHHcCCCeEEEecCHHHHHHHHHHHHHhcchhhcCCCCCccccHHHHHHHHHHHHHHCCCCEEEecCcCC
Confidence 999999999999 5999999987764 5554442 248899876 22 2258999999998865
No 70
>PLN02347 GMP synthetase
Probab=98.39 E-value=1.4e-06 Score=96.58 Aligned_cols=76 Identities=21% Similarity=0.186 Sum_probs=58.2
Q ss_pred HHHHHHHHhC-CCeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEE
Q 009537 252 WLWDYLRRSG-ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTV 330 (532)
Q Consensus 252 ~L~dylrrs~-~~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~ 330 (532)
++.+...+.+ .++++|+||||+||+++|+|++ +| ++ + .++++
T Consensus 218 ~i~~i~~~~~~~~~vvvalSGGVDSsvla~l~~-------~a--------------lG-~---------------~v~av 260 (536)
T PLN02347 218 QIELIKATVGPDEHVICALSGGVDSTVAATLVH-------KA--------------IG-D---------------RLHCV 260 (536)
T ss_pred HHHHHHHHhccCCeEEEEecCChhHHHHHHHHH-------HH--------------hC-C---------------cEEEE
Confidence 4445444556 3569999999999999999985 55 44 3 48999
Q ss_pred EeCCCCCCHHHHHHH-HHHHHHhCCceEEEechHH
Q 009537 331 FMGSENSSQETRMRA-KKLADEIGSWHLDVSIDTV 364 (532)
Q Consensus 331 ~m~t~nSs~~t~~~A-~~LA~~iG~~h~~i~Id~~ 364 (532)
++.+...+....++| +.+|+.+|++|..+|+++.
T Consensus 261 ~id~g~~~~~E~~~~~~~~a~~lgi~~~vvd~~e~ 295 (536)
T PLN02347 261 FVDNGLLRYKEQERVMETFKRDLHLPVTCVDASER 295 (536)
T ss_pred EEeCCCCChhHHHHHHHHHHHHcCCcEEEEeCcHH
Confidence 999776554444555 8899999999999999864
No 71
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=98.29 E-value=2.9e-06 Score=88.25 Aligned_cols=75 Identities=21% Similarity=0.244 Sum_probs=57.3
Q ss_pred HHHHHHHHHhCCCeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEE
Q 009537 251 CWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTV 330 (532)
Q Consensus 251 ~~L~dylrrs~~~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~ 330 (532)
..|.+++. .++++|++|||+||+++|+++. ++ ++ + .++++
T Consensus 8 ~~l~~~v~---~~kVvValSGGVDSsvla~ll~-------~~--------------~G-~---------------~v~av 47 (311)
T TIGR00884 8 EEIREQVG---DAKVIIALSGGVDSSVAAVLAH-------RA--------------IG-D---------------RLTCV 47 (311)
T ss_pred HHHHHHhC---CCcEEEEecCChHHHHHHHHHH-------HH--------------hC-C---------------CEEEE
Confidence 35566663 3789999999999999998884 44 34 3 38999
Q ss_pred EeCCCCCCHHHHHHHHHH-HHHhCCceEEEechHHH
Q 009537 331 FMGSENSSQETRMRAKKL-ADEIGSWHLDVSIDTVV 365 (532)
Q Consensus 331 ~m~t~nSs~~t~~~A~~L-A~~iG~~h~~i~Id~~v 365 (532)
++.+......+.++++++ ++++|++|+.+++++.+
T Consensus 48 ~vd~G~~~~~E~e~~~~~~~~~lgi~~~vvd~~e~f 83 (311)
T TIGR00884 48 FVDHGLLRKGEAEQVVKTFGDRLGLNLVYVDAKERF 83 (311)
T ss_pred EEeCCCCChHHHHHHHHHHHHHcCCcEEEEeCcHHH
Confidence 998776556666777665 55899999999998754
No 72
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=98.25 E-value=7.4e-06 Score=75.75 Aligned_cols=72 Identities=21% Similarity=0.215 Sum_probs=51.0
Q ss_pred eEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeCCCCCCHHHHH
Q 009537 264 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRM 343 (532)
Q Consensus 264 g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~t~nSs~~t~~ 343 (532)
.++|+||||+||+++++++. +. +.. .+.++++.....++++.+
T Consensus 3 d~~v~lSGG~DSs~ll~l~~-------~~---------------~~~---------------~v~~v~~~~g~~~~~~~~ 45 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLLK-------EK---------------YGL---------------NPLAVTVDNGFNSEEAVK 45 (154)
T ss_pred CEEEECCCchhHHHHHHHHH-------HH---------------hCC---------------ceEEEEeCCCCCCHHHHH
Confidence 47899999999999988873 22 111 256777766556778899
Q ss_pred HHHHHHHH-hCCceEEEechHHHHHHHHHh
Q 009537 344 RAKKLADE-IGSWHLDVSIDTVVSAFLSLF 372 (532)
Q Consensus 344 ~A~~LA~~-iG~~h~~i~Id~~v~a~~~~f 372 (532)
.|+++|+. ++..+..+++++........+
T Consensus 46 ~~~~~a~~g~~~~~~~~~~~~~~~~~~~~l 75 (154)
T cd01996 46 NIKNLIKKGLDLDHLVINPEEMKDLQLARF 75 (154)
T ss_pred HHHHHHHhCCCeEEEecCHHHHHHHHHHHH
Confidence 99999999 556666777766655444443
No 73
>PRK00074 guaA GMP synthase; Reviewed
Probab=98.17 E-value=6.6e-06 Score=91.10 Aligned_cols=82 Identities=20% Similarity=0.206 Sum_probs=62.1
Q ss_pred HHHhhHHHHHHHHHHHhCCCeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhcc
Q 009537 244 EIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFA 323 (532)
Q Consensus 244 ei~~~~a~~L~dylrrs~~~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~ 323 (532)
++......+|.++++. ++++|++|||+||+++|+++. ++ ++ +
T Consensus 200 ~~~~~~~~~l~~~v~~---~~vlva~SGGvDS~vll~ll~-------~~--------------lg-~------------- 241 (511)
T PRK00074 200 NFIEEAIEEIREQVGD---KKVILGLSGGVDSSVAAVLLH-------KA--------------IG-D------------- 241 (511)
T ss_pred HHHHHHHHHHHHhcCC---CcEEEEeCCCccHHHHHHHHH-------HH--------------hC-C-------------
Confidence 4444455667777663 799999999999999999884 44 33 3
Q ss_pred CCeEEEEEeCCCCCCHHHHHHHHH-HHHHhCCceEEEechHHH
Q 009537 324 KRIFYTVFMGSENSSQETRMRAKK-LADEIGSWHLDVSIDTVV 365 (532)
Q Consensus 324 ~~~~~t~~m~t~nSs~~t~~~A~~-LA~~iG~~h~~i~Id~~v 365 (532)
.++++++.+......+.++|++ +|+.+|++|+.+++++.+
T Consensus 242 --~v~av~vd~g~~~~~e~~~~~~~~a~~lgi~~~vvd~~~~f 282 (511)
T PRK00074 242 --QLTCVFVDHGLLRKNEAEQVMEMFREHFGLNLIHVDASDRF 282 (511)
T ss_pred --ceEEEEEeCCCCCHHHHHHHHHHHHHHcCCcEEEEccHHHH
Confidence 3899999877545555667775 789999999999998653
No 74
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=98.17 E-value=2e-05 Score=83.15 Aligned_cols=72 Identities=19% Similarity=0.290 Sum_probs=52.8
Q ss_pred HHHHHhCC--CeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEe
Q 009537 255 DYLRRSGA--SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFM 332 (532)
Q Consensus 255 dylrrs~~--~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m 332 (532)
+.+|+.+. -.++||||||+||+++|.++. +. ++ . .+.++++
T Consensus 50 ~~~k~~~~~~yD~iV~lSGGkDSs~la~ll~-------~~--------------~g-l---------------~~l~vt~ 92 (343)
T TIGR03573 50 DKIKKKGGGRYDCIIGVSGGKDSTYQAHVLK-------KK--------------LG-L---------------NPLLVTV 92 (343)
T ss_pred HHHHhcCCCCCCEEEECCCCHHHHHHHHHHH-------HH--------------hC-C---------------ceEEEEE
Confidence 44554442 359999999999999987763 22 33 2 2455666
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCceEEEechH
Q 009537 333 GSENSSQETRMRAKKLADEIGSWHLDVSIDT 363 (532)
Q Consensus 333 ~t~nSs~~t~~~A~~LA~~iG~~h~~i~Id~ 363 (532)
.....++...+.|+.+|+.+|+.|+.+.++.
T Consensus 93 ~~~~~~e~~~~n~~~~~~~lgvd~~~i~~d~ 123 (343)
T TIGR03573 93 DPGWNTELGVKNLNNLIKKLGFDLHTITINP 123 (343)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCeEEEeCCH
Confidence 5555577888899999999999999998874
No 75
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=98.16 E-value=5.1e-06 Score=82.94 Aligned_cols=64 Identities=17% Similarity=0.133 Sum_probs=53.2
Q ss_pred CeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeCCCCCCHHHH
Q 009537 263 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 342 (532)
Q Consensus 263 ~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~t~nSs~~t~ 342 (532)
++++|.+|||+||+++++++. + .+ + .++++++.+......++
T Consensus 2 ~kvvVl~SGG~DSt~~l~~a~-------~---------------~~-~---------------~v~alt~dygq~~~~El 43 (231)
T PRK11106 2 KRAVVVFSGGQDSTTCLIQAL-------Q---------------QY-D---------------EVHCVTFDYGQRHRAEI 43 (231)
T ss_pred CcEEEEeeCcHHHHHHHHHHH-------h---------------cC-C---------------eEEEEEEEeCCCCHHHH
Confidence 578999999999999887763 1 11 2 38899888877778899
Q ss_pred HHHHHHHHHhCCc-eEEEechHH
Q 009537 343 MRAKKLADEIGSW-HLDVSIDTV 364 (532)
Q Consensus 343 ~~A~~LA~~iG~~-h~~i~Id~~ 364 (532)
+.|+.+|+.+|+. |..++++.+
T Consensus 44 ~~a~~ia~~~gi~~h~vid~~~l 66 (231)
T PRK11106 44 DVARELALKLGARAHKVLDVTLL 66 (231)
T ss_pred HHHHHHHHHcCCCeEEEEecccc
Confidence 9999999999996 999999864
No 76
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=98.15 E-value=4.6e-06 Score=81.00 Aligned_cols=62 Identities=24% Similarity=0.352 Sum_probs=50.5
Q ss_pred EEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeCCCCCCHHHHHH
Q 009537 265 FLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMR 344 (532)
Q Consensus 265 ~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~t~nSs~~t~~~ 344 (532)
++|+||||+||+++++++. + .+ . .++++++.....+..+.+.
T Consensus 1 ~vv~lSGG~DSs~~~~~~~-------~---------------~g-~---------------~v~~~~~~~~~~~~~e~~~ 42 (201)
T TIGR00364 1 AVVVLSGGQDSTTCLAIAK-------D---------------EG-Y---------------EVHAITFDYGQRHSRELES 42 (201)
T ss_pred CEEEeccHHHHHHHHHHHH-------H---------------cC-C---------------cEEEEEEECCCCCHHHHHH
Confidence 4799999999999887763 1 22 2 3788888876666788899
Q ss_pred HHHHHHHhCCceEEEechHH
Q 009537 345 AKKLADEIGSWHLDVSIDTV 364 (532)
Q Consensus 345 A~~LA~~iG~~h~~i~Id~~ 364 (532)
|+++|+.+|++|+.++++.+
T Consensus 43 a~~~a~~lgi~~~~~~~~~~ 62 (201)
T TIGR00364 43 ARKIAEALGIEHHVIDLSLL 62 (201)
T ss_pred HHHHHHHhCCCeEEEechhh
Confidence 99999999999999999853
No 77
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=98.13 E-value=6.3e-06 Score=79.82 Aligned_cols=93 Identities=19% Similarity=0.127 Sum_probs=65.7
Q ss_pred EEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeCCCCCCHHHHHH
Q 009537 265 FLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMR 344 (532)
Q Consensus 265 ~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~t~nSs~~t~~~ 344 (532)
++|++|||+||++++.++. +. +.. .++++++.+...+.++.+.
T Consensus 1 vvva~SGG~DS~~ll~ll~-------~~---------------~~~---------------~v~~v~vd~g~~~~~~~~~ 43 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAV-------DA---------------LGD---------------RVLAVTATSPLFPRRELEE 43 (202)
T ss_pred CEEEccCCHHHHHHHHHHH-------HH---------------hCC---------------cEEEEEeCCCCCCHHHHHH
Confidence 5899999999999988874 22 221 2778888876667889999
Q ss_pred HHHHHHHhCCceEEEechHHHHHHHHHhhhhhCCCCCCc------------chhhhcCCCEeeeceee
Q 009537 345 AKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPRYK------------LDEVDMGMTYEELSVYG 400 (532)
Q Consensus 345 A~~LA~~iG~~h~~i~Id~~v~a~~~~f~~~~g~~p~~~------------tDE~dmGmtY~~L~~~~ 400 (532)
|+++|+++|++|+.++++....... .+..+..+ .--.+.|.++..+++..
T Consensus 44 ~~~~a~~lgi~~~~~~~~~~~~~~~------~~~~~~~~~~~r~~~~~~l~~~a~~~g~~~I~~G~~~ 105 (202)
T cd01990 44 AKRLAKEIGIRHEVIETDELDDPEF------AKNPPDRCYLCKKALYEALKEIAEELGLDVVLDGTNA 105 (202)
T ss_pred HHHHHHHcCCcEEEEeCCccccHHH------hcCCCCccchhHHHHHHHHHHHHHHCCCCEEEEcCcc
Confidence 9999999999999999985432211 12223322 11235788888888764
No 78
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=98.13 E-value=7.9e-06 Score=80.58 Aligned_cols=66 Identities=26% Similarity=0.297 Sum_probs=55.4
Q ss_pred CCeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeCCCCCCHHH
Q 009537 262 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQET 341 (532)
Q Consensus 262 ~~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~t~nSs~~t 341 (532)
.++.++-||||.||+++|+++. + -+ + .|+++.+-..+-...+
T Consensus 2 ~~kavvl~SGG~DStt~l~~a~-------~---------------~~-~---------------ev~alsfdYGQrh~~E 43 (222)
T COG0603 2 MKKAVVLLSGGLDSTTCLAWAK-------K---------------EG-Y---------------EVHALTFDYGQRHRKE 43 (222)
T ss_pred CceEEEEccCChhHHHHHHHHH-------h---------------cC-C---------------EEEEEEeeCCCCcHHH
Confidence 4678999999999999998873 2 12 2 5899998877777999
Q ss_pred HHHHHHHHHHhCCceEEEechHHH
Q 009537 342 RMRAKKLADEIGSWHLDVSIDTVV 365 (532)
Q Consensus 342 ~~~A~~LA~~iG~~h~~i~Id~~v 365 (532)
++.|+.+|+.||+.|++||++-+-
T Consensus 44 le~A~~iak~lgv~~~iid~~~~~ 67 (222)
T COG0603 44 LEAAKELAKKLGVPHHIIDVDLLG 67 (222)
T ss_pred HHHHHHHHHHcCCCeEEechhHHh
Confidence 999999999999999999997543
No 79
>PRK13820 argininosuccinate synthase; Provisional
Probab=98.09 E-value=1.9e-05 Score=84.61 Aligned_cols=102 Identities=18% Similarity=0.205 Sum_probs=72.6
Q ss_pred CCeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeCCCCCCHHH
Q 009537 262 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQET 341 (532)
Q Consensus 262 ~~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~t~nSs~~t 341 (532)
.++++|++|||+||++++.++. +. ++.+ .|+++++.... ..++
T Consensus 2 ~~kVvvA~SGGvDSsvll~lL~-------e~--------------~g~~---------------~Viav~vd~g~-~~~e 44 (394)
T PRK13820 2 MKKVVLAYSGGLDTSVCVPLLK-------EK--------------YGYD---------------EVITVTVDVGQ-PEEE 44 (394)
T ss_pred CCeEEEEEeCcHHHHHHHHHHH-------Hh--------------cCCC---------------EEEEEEEECCC-ChHH
Confidence 3689999999999999888763 22 2321 27888887643 3567
Q ss_pred HHHHHHHHHHhCCceEEEechH-HHHHHHHHhhhh----hCCCCCCc------------chhhhcCCCEeeeceeeE
Q 009537 342 RMRAKKLADEIGSWHLDVSIDT-VVSAFLSLFQTL----TGKRPRYK------------LDEVDMGMTYEELSVYGR 401 (532)
Q Consensus 342 ~~~A~~LA~~iG~~h~~i~Id~-~v~a~~~~f~~~----~g~~p~~~------------tDE~dmGmtY~~L~~~~r 401 (532)
.+.|+++|+++|++|+.+|+++ ..+.++..+-.. -| .|..+ .-..+.|++|...++.++
T Consensus 45 ~~~a~~~a~~lGi~~~vvd~~eef~~~~i~~~i~~n~~~~g-Ypl~~~~cR~~i~~~l~e~A~e~G~~~IA~G~t~~ 120 (394)
T PRK13820 45 IKEAEEKAKKLGDKHYTIDAKEEFAKDYIFPAIKANALYEG-YPLGTALARPLIAEKIVEVAEKEGASAIAHGCTGK 120 (394)
T ss_pred HHHHHHHHHHcCCCEEEEeCHHHHHHHHHHHHHHhCccccC-CcCcHHHHHHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 8899999999999999999995 443454322221 24 55554 112358999999999887
No 80
>PRK00919 GMP synthase subunit B; Validated
Probab=98.08 E-value=1.2e-05 Score=83.38 Aligned_cols=80 Identities=19% Similarity=0.147 Sum_probs=62.4
Q ss_pred HHhhHHHHHHHHHHHhCCCeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccC
Q 009537 245 IAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAK 324 (532)
Q Consensus 245 i~~~~a~~L~dylrrs~~~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~ 324 (532)
+......-|.+.+. .++++|++|||+||+++|++++ ++ +| +
T Consensus 7 ~~~~~~~~l~~~~~---~~kVlVa~SGGVDSsvla~la~-------~~--------------lG-~-------------- 47 (307)
T PRK00919 7 FIEEAIEEIREEIG---DGKAIIALSGGVDSSVAAVLAH-------RA--------------IG-D-------------- 47 (307)
T ss_pred HHHHHHHHHHHHhC---CCCEEEEecCCHHHHHHHHHHH-------HH--------------hC-C--------------
Confidence 33344445666553 3799999999999999999884 44 44 2
Q ss_pred CeEEEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEechHHH
Q 009537 325 RIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVV 365 (532)
Q Consensus 325 ~~~~t~~m~t~nSs~~t~~~A~~LA~~iG~~h~~i~Id~~v 365 (532)
.+++++..+......+.+.|+++|+++ +.|..+++++.+
T Consensus 48 -~v~aV~vD~G~~~~~E~e~a~~~~~~~-i~~~vvd~~e~f 86 (307)
T PRK00919 48 -RLTPVFVDTGLMRKGETERIKETFSDM-LNLRIVDAKDRF 86 (307)
T ss_pred -eEEEEEEECCCCCHHHHHHHHHHHhcc-CCcEEEECCHHH
Confidence 489999988777788999999999998 999999998744
No 81
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=98.07 E-value=1.1e-05 Score=83.36 Aligned_cols=64 Identities=25% Similarity=0.308 Sum_probs=53.0
Q ss_pred eEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeCCCCCCHHHHH
Q 009537 264 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRM 343 (532)
Q Consensus 264 g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~t~nSs~~t~~ 343 (532)
+++|++|||+||+++|+++. ++ ++ . .++++++.+......+.+
T Consensus 1 kVlVa~SGGVDSsvla~ll~-------~~--------------lG-~---------------~v~aV~vd~g~~~~~E~~ 43 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLH-------KA--------------IG-D---------------RLTCVFVDNGLLRKNEAE 43 (295)
T ss_pred CEEEEEcCChHHHHHHHHHH-------HH--------------hC-C---------------cEEEEEecCCCCChHHHH
Confidence 47899999999999999885 44 34 2 388999987766677889
Q ss_pred HHHHHHHHhCC-ceEEEechHH
Q 009537 344 RAKKLADEIGS-WHLDVSIDTV 364 (532)
Q Consensus 344 ~A~~LA~~iG~-~h~~i~Id~~ 364 (532)
+|+++|+++|. +|+.+++++.
T Consensus 44 ~~~~~~~~~g~i~~~vvd~~e~ 65 (295)
T cd01997 44 RVEELFSKLLGINLIVVDASER 65 (295)
T ss_pred HHHHHHHHhCCCcEEEEcCcHH
Confidence 99999999997 9999999853
No 82
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=98.03 E-value=1.9e-05 Score=77.72 Aligned_cols=67 Identities=30% Similarity=0.408 Sum_probs=48.7
Q ss_pred CCCeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeCCCCCCHH
Q 009537 261 GASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQE 340 (532)
Q Consensus 261 ~~~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~t~nSs~~ 340 (532)
....+.+.||||+||+++|+++. + .... .+.++..+.......
T Consensus 16 ~~~~i~~~LSGGlDSs~i~~~~~-------~---------------~~~~---------------~~~~~t~~~~~~~~~ 58 (255)
T PF00733_consen 16 SDKPIGILLSGGLDSSAIAALAA-------R---------------QGGP---------------PIKTFTIGFEDDDYD 58 (255)
T ss_dssp CTSEEEEE--SSHHHHHHHHHHH-------H---------------TCCS---------------EEEEEEEECSSCC--
T ss_pred cCCCEEEECCCChhHHHHHHHHH-------H---------------hhCC---------------ceeEEEEEcCCCcch
Confidence 45789999999999999999884 1 1112 477888877766666
Q ss_pred HHHHHHHHHHHhCCceEEEechHH
Q 009537 341 TRMRAKKLADEIGSWHLDVSIDTV 364 (532)
Q Consensus 341 t~~~A~~LA~~iG~~h~~i~Id~~ 364 (532)
+...|+++|+.+|..|+.++++.-
T Consensus 59 e~~~a~~va~~~~~~~~~~~~~~~ 82 (255)
T PF00733_consen 59 EREYARKVARHLGLEHHEIELDPE 82 (255)
T ss_dssp HHHHHHHHHHHHT-EEEEEEE-HH
T ss_pred hHHHHHHHhcccccccceeeechh
Confidence 889999999999999999888753
No 83
>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Rhizobium meliloti (Sinorhizobium meliloti), a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA [, ]. In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance []. The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr [].; PDB: 3BL5_B 2PG3_A.
Probab=97.99 E-value=1.5e-05 Score=78.35 Aligned_cols=65 Identities=23% Similarity=0.307 Sum_probs=49.6
Q ss_pred eEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeCCCCCCHHHHH
Q 009537 264 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRM 343 (532)
Q Consensus 264 g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~t~nSs~~t~~ 343 (532)
+.+|.+|||+||+++|+++. + .+ + .+++++.-.......+.+
T Consensus 1 Kavvl~SGG~DSt~~l~~~~-------~---------------~~-~---------------~v~al~~~YGq~~~~El~ 42 (209)
T PF06508_consen 1 KAVVLFSGGLDSTTCLYWAK-------K---------------EG-Y---------------EVYALTFDYGQRHRRELE 42 (209)
T ss_dssp EEEEE--SSHHHHHHHHHHH-------H---------------H--S---------------EEEEEEEESSSTTCHHHH
T ss_pred CEEEEeCCCHHHHHHHHHHH-------H---------------cC-C---------------eEEEEEEECCCCCHHHHH
Confidence 47899999999999988773 2 23 2 478888887777889999
Q ss_pred HHHHHHHHhCC-ceEEEechHHHH
Q 009537 344 RAKKLADEIGS-WHLDVSIDTVVS 366 (532)
Q Consensus 344 ~A~~LA~~iG~-~h~~i~Id~~v~ 366 (532)
.|+++|+.+|+ +|+.|+++.+-+
T Consensus 43 ~a~~i~~~l~v~~~~~i~l~~~~~ 66 (209)
T PF06508_consen 43 AAKKIAKKLGVKEHEVIDLSFLKE 66 (209)
T ss_dssp HHHHHHHHCT-SEEEEEE-CHHHH
T ss_pred HHHHHHHHhCCCCCEEeeHHHHHh
Confidence 99999999999 999999986543
No 84
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=97.98 E-value=4.7e-05 Score=71.99 Aligned_cols=70 Identities=23% Similarity=0.155 Sum_probs=51.3
Q ss_pred eEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeCCCC--CCHHH
Q 009537 264 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSEN--SSQET 341 (532)
Q Consensus 264 g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~t~n--Ss~~t 341 (532)
.++|++|||+||++++.++. +... +.... -.++++++.... .+.++
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~-------~~~~-----------~~~~~--------------~~~~~~~~d~~~~~~~~~~ 48 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLK-------KLQR-----------RYPYG--------------FELEALTVDEGIPGYRDES 48 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHH-------HHHh-----------hcCCC--------------eEEEEEEEECCCCCCcHHH
Confidence 47999999999999988874 2200 01000 136777776443 46788
Q ss_pred HHHHHHHHHHhCCceEEEechHHH
Q 009537 342 RMRAKKLADEIGSWHLDVSIDTVV 365 (532)
Q Consensus 342 ~~~A~~LA~~iG~~h~~i~Id~~v 365 (532)
.+.++++|+.+|+.+..+++++.+
T Consensus 49 ~~~~~~~~~~~~i~~~~~~~~~~~ 72 (185)
T cd01993 49 LEVVERLAEELGIELEIVSFKEEY 72 (185)
T ss_pred HHHHHHHHHHcCCceEEEehhhhc
Confidence 999999999999999999998655
No 85
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=97.91 E-value=3.3e-05 Score=82.92 Aligned_cols=98 Identities=17% Similarity=0.032 Sum_probs=66.8
Q ss_pred CeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeCC-CCCCHHH
Q 009537 263 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGS-ENSSQET 341 (532)
Q Consensus 263 ~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~t-~nSs~~t 341 (532)
+.++++||||+||+++|.++. + .|. .++++++.+ ..+++.+
T Consensus 177 gkvvvllSGGiDS~vaa~l~~-------k---------------~G~----------------~v~av~~~~~~~~~~~~ 218 (394)
T PRK01565 177 GKALLLLSGGIDSPVAGYLAM-------K---------------RGV----------------EIEAVHFHSPPYTSERA 218 (394)
T ss_pred CCEEEEECCChhHHHHHHHHH-------H---------------CCC----------------EEEEEEEeCCCCCcHHH
Confidence 578999999999999988873 1 232 377888855 3566788
Q ss_pred HHHHHHHHHHhC-----CceEEEechHHHHHHHHHhhhhhCCCCCCc---------chhhhcCCCEeeeceee
Q 009537 342 RMRAKKLADEIG-----SWHLDVSIDTVVSAFLSLFQTLTGKRPRYK---------LDEVDMGMTYEELSVYG 400 (532)
Q Consensus 342 ~~~A~~LA~~iG-----~~h~~i~Id~~v~a~~~~f~~~~g~~p~~~---------tDE~dmGmtY~~L~~~~ 400 (532)
.+.|+++|+.++ +.|+.+|++++.+++...... ...-.++ .-..++|..+..+++-.
T Consensus 219 ~~~~~~~a~~l~~~~~~i~~~vv~~~~~~~~i~~~~~~--~~~~v~~Rr~~~~~a~~~A~~~g~~~IvtG~~~ 289 (394)
T PRK01565 219 KEKVIDLARILAKYGGRIKLHVVPFTEIQEEIKKKVPE--SYLMTLMRRFMMRIADKIAEKRGALAIVTGESL 289 (394)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEECHHHHHHHhhcCCC--ceEEEeHHHHHHHHHHHHHHHcCCCEEEEcccc
Confidence 899999999995 999999999886555432111 0001111 11225788888887654
No 86
>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .
Probab=97.82 E-value=4.3e-05 Score=76.69 Aligned_cols=64 Identities=27% Similarity=0.366 Sum_probs=46.0
Q ss_pred CeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeCCCCCCHHHH
Q 009537 263 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 342 (532)
Q Consensus 263 ~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~t~nSs~~t~ 342 (532)
..+.+.||||+||+++|+++. + .+..+ + ..+++..+ .....+.
T Consensus 16 ~~v~~~LSGGlDSs~va~~~~-------~---------------~~~~~---~----------~~~~~~~~--~~~~~e~ 58 (269)
T cd01991 16 VPVGVLLSGGLDSSLVAALAA-------R---------------LLPEP---V----------KTFSIGFG--FEGSDER 58 (269)
T ss_pred CceEEeecccHHHHHHHHHHH-------H---------------hhCCC---C----------ceEEEeeC--CCCCChH
Confidence 578999999999999998874 2 12110 0 13444444 3334468
Q ss_pred HHHHHHHHHhCCceEEEechH
Q 009537 343 MRAKKLADEIGSWHLDVSIDT 363 (532)
Q Consensus 343 ~~A~~LA~~iG~~h~~i~Id~ 363 (532)
..|+.+|+.+|+.|+.++++.
T Consensus 59 ~~a~~~a~~l~~~~~~~~~~~ 79 (269)
T cd01991 59 EYARRVAEHLGTEHHEVEFTP 79 (269)
T ss_pred HHHHHHHHHhCCcceEEEcCH
Confidence 999999999999999998874
No 87
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=97.72 E-value=0.00023 Score=77.90 Aligned_cols=95 Identities=28% Similarity=0.273 Sum_probs=60.6
Q ss_pred cHHHHHhhHHHHHHHHHHHh--CCCeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCc
Q 009537 241 PEEEIAFGPGCWLWDYLRRS--GASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTE 318 (532)
Q Consensus 241 peeei~~~~a~~L~dylrrs--~~~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~ 318 (532)
+++|........|.+-+++. ....+.+.||||+||+++|+++.. .....
T Consensus 230 ~~~~~~e~l~~~l~~aV~~r~~~~~~vg~~LSGGlDSs~iaa~a~~----------------------~~~~~------- 280 (467)
T TIGR01536 230 SEEDLVDELRSLLEDAVKRRLVADVPVGVLLSGGLDSSLVAAIARR----------------------EAPRG------- 280 (467)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCceEEEecCChhHHHHHHHHHH----------------------hcCCC-------
Confidence 45566666666666666554 234688999999999999988742 11100
Q ss_pred hhhccCCeEEEEEeCCC-CCCHHHHHHHHHHHHHhCCceEEEechH--HHHHHHHH
Q 009537 319 SREFAKRIFYTVFMGSE-NSSQETRMRAKKLADEIGSWHLDVSIDT--VVSAFLSL 371 (532)
Q Consensus 319 ~~e~~~~~~~t~~m~t~-nSs~~t~~~A~~LA~~iG~~h~~i~Id~--~v~a~~~~ 371 (532)
.+.|+..... ...-.+...|+++|+.+|+.|+.+++++ +.+.+...
T Consensus 281 -------~~~~~t~~~~~~~~~~E~~~A~~vA~~lg~~~~~i~~~~~~~~~~~~~~ 329 (467)
T TIGR01536 281 -------PVHTFSIGFEGSPDFDESPYARKVADHLGTEHHEVLFSVEEGLDALPEV 329 (467)
T ss_pred -------CceEEEEecCCCCCCChHHHHHHHHHHhCCcCeEEECCHHHHHHHHHHH
Confidence 1344443333 2223456799999999999999999853 34444333
No 88
>PRK08349 hypothetical protein; Validated
Probab=97.72 E-value=0.00023 Score=69.17 Aligned_cols=93 Identities=13% Similarity=0.069 Sum_probs=57.0
Q ss_pred eEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeCCCCCCHHHHH
Q 009537 264 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRM 343 (532)
Q Consensus 264 g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~t~nSs~~t~~ 343 (532)
..++++|||.||+++|.++.. .+. .++++++.. +....+
T Consensus 2 ~~vvllSGG~DS~v~~~~l~~----------------------~g~----------------~v~av~~d~---~~~~~~ 40 (198)
T PRK08349 2 KAVALLSSGIDSPVAIYLMLR----------------------RGV----------------EVYPVHFRQ---DEKKEE 40 (198)
T ss_pred cEEEEccCChhHHHHHHHHHH----------------------cCC----------------eEEEEEEeC---CHHHHH
Confidence 578999999999999887631 232 378888874 346667
Q ss_pred HHHHHHHHhC----Cce---EEEechHHHHHHHHHhhhhhCCCCCCc------------chhhhcCCCEeeece
Q 009537 344 RAKKLADEIG----SWH---LDVSIDTVVSAFLSLFQTLTGKRPRYK------------LDEVDMGMTYEELSV 398 (532)
Q Consensus 344 ~A~~LA~~iG----~~h---~~i~Id~~v~a~~~~f~~~~g~~p~~~------------tDE~dmGmtY~~L~~ 398 (532)
.|+++|+.++ +.| ..++..+........+.. .+..+..| .-..++|.++..++|
T Consensus 41 ~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~c~~cr~~~~~~a~~~A~~~g~~~I~tG~ 113 (198)
T PRK08349 41 KVRELVERLQELHGGKLKDPVVVDAFEEQGPVFEKLRE-LKKEKWTCIFCKYTMYRKAERIAHEIGASAIITGD 113 (198)
T ss_pred HHHHHHHHHHHhcCCCcceEEEEcchHHhHHHHHHHHh-hCCCCCchHHHHHHHHHHHHHHHHHcCCCEEEEec
Confidence 7777777775 776 445543322212222111 13445544 222358999999985
No 89
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=97.69 E-value=0.00028 Score=67.03 Aligned_cols=93 Identities=17% Similarity=0.076 Sum_probs=56.6
Q ss_pred eEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeCCCCCCHH---
Q 009537 264 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQE--- 340 (532)
Q Consensus 264 g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~t~nSs~~--- 340 (532)
.++|++|||+||+++|.++. + .+ . .++++++.....+.+
T Consensus 1 ~vlv~~SGG~DS~~la~ll~-------~---------------~g-~---------------~v~av~~d~g~~~~~~~~ 42 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLM-------K---------------RG-I---------------EVDALHFNSGPFTSEKAR 42 (177)
T ss_pred CEEEEecCChhHHHHHHHHH-------H---------------cC-C---------------eEEEEEEeCCCCCchHHH
Confidence 37899999999999988873 1 23 2 378888876543332
Q ss_pred -HHHHHHHHHHHhCCceE--EEechHH-HHHHHHHhhhhhCCCCCCc------------chhhhcCCCEeeecee
Q 009537 341 -TRMRAKKLADEIGSWHL--DVSIDTV-VSAFLSLFQTLTGKRPRYK------------LDEVDMGMTYEELSVY 399 (532)
Q Consensus 341 -t~~~A~~LA~~iG~~h~--~i~Id~~-v~a~~~~f~~~~g~~p~~~------------tDE~dmGmtY~~L~~~ 399 (532)
....|...+..+|..|. .++.+.. .. ..+. .+.+|+.| .-...+|.++..+++.
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~--~~~~~~~c~~Cr~~~~~~~~~~A~~~g~~~I~~G~~ 112 (177)
T cd01712 43 EKVEDLARKLARYSPGHKLVVIIFTFFVQK---EIYG--YGKEKYRCILCKRMMYRIAEKLAEELGADAIVTGES 112 (177)
T ss_pred HHHHHHHHHHHHhCCCCceEEEeCcHHHHH---HHHH--hCCCccHhHHHHHHHHHHHHHHHHHcCCCEEEEccC
Confidence 33444444566776664 5554432 11 1111 36666666 1123589999888875
No 90
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=97.66 E-value=0.00014 Score=67.06 Aligned_cols=68 Identities=18% Similarity=0.154 Sum_probs=53.6
Q ss_pred EEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeCCCCCCHHHHHH
Q 009537 265 FLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMR 344 (532)
Q Consensus 265 ~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~t~nSs~~t~~~ 344 (532)
++|++|||.||++++.|+. ++ .... ..++.+++.+....++|.+.
T Consensus 2 i~v~~SGGkDS~~ll~l~~-------~~---------------~~~~-------------~~~~~v~~dtg~~~~~~~~~ 46 (173)
T cd01713 2 VVVSFSGGKDSTVLLHLAL-------KA---------------LPEL-------------KPVPVIFLDTGYEFPETYEF 46 (173)
T ss_pred eEEEecCChHHHHHHHHHH-------Hh---------------cccc-------------cCceEEEeCCCCCCHHHHHH
Confidence 6899999999999998874 32 1100 02678888887778999999
Q ss_pred HHHHHHHhCCceEEEechHHHHH
Q 009537 345 AKKLADEIGSWHLDVSIDTVVSA 367 (532)
Q Consensus 345 A~~LA~~iG~~h~~i~Id~~v~a 367 (532)
++.+++.+|+.+..+..+.....
T Consensus 47 ~~~~~~~~g~~~~~~~~~~~~~~ 69 (173)
T cd01713 47 VDRVAERYGLPLVVVRPPDSPAE 69 (173)
T ss_pred HHHHHHHhCCCeEEECCCccHHH
Confidence 99999999999999988765443
No 91
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=97.65 E-value=9.7e-05 Score=71.88 Aligned_cols=62 Identities=15% Similarity=0.098 Sum_probs=43.7
Q ss_pred eEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeCCCCC------
Q 009537 264 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENS------ 337 (532)
Q Consensus 264 g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~t~nS------ 337 (532)
++++++|||.||++++.++. + .|. .+.++++-+...
T Consensus 1 kv~v~~SGGkDS~~al~~a~-------~---------------~G~----------------~v~~l~~~~~~~~~~~~~ 42 (194)
T cd01994 1 KVVALISGGKDSCYALYRAL-------E---------------EGH----------------EVVALLNLTPEEGSSMMY 42 (194)
T ss_pred CEEEEecCCHHHHHHHHHHH-------H---------------cCC----------------EEEEEEEEecCCCCcccc
Confidence 36899999999999888763 2 232 244444432221
Q ss_pred CHHHHHHHHHHHHHhCCceEEEechH
Q 009537 338 SQETRMRAKKLADEIGSWHLDVSIDT 363 (532)
Q Consensus 338 s~~t~~~A~~LA~~iG~~h~~i~Id~ 363 (532)
.....+.++.+|+.+|++|+.++++.
T Consensus 43 h~~~~e~~~~~A~~lgipl~~i~~~~ 68 (194)
T cd01994 43 HTVNHELLELQAEAMGIPLIRIEISG 68 (194)
T ss_pred cccCHHHHHHHHHHcCCcEEEEeCCC
Confidence 22367899999999999999998754
No 92
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=97.65 E-value=0.00016 Score=69.13 Aligned_cols=66 Identities=15% Similarity=0.150 Sum_probs=49.4
Q ss_pred eEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeCCCC--CCHHH
Q 009537 264 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSEN--SSQET 341 (532)
Q Consensus 264 g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~t~n--Ss~~t 341 (532)
.++|++|||.||++++.++. +.. ++.+ . .++++++.... .+.+.
T Consensus 1 ~v~va~SGG~DS~~ll~ll~-------~~~-----------~~~~-~---------------~v~~v~vd~g~~~~~~~~ 46 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLL-------KLQ-----------PKLK-I---------------RLIAAHVDHGLRPESDEE 46 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHH-------HHH-----------HHcC-C---------------CEEEEEeCCCCChhHHHH
Confidence 37999999999999988874 221 0011 1 27788877543 34678
Q ss_pred HHHHHHHHHHhCCceEEEechH
Q 009537 342 RMRAKKLADEIGSWHLDVSIDT 363 (532)
Q Consensus 342 ~~~A~~LA~~iG~~h~~i~Id~ 363 (532)
.+.++.+|+.+|+++..++++.
T Consensus 47 ~~~~~~~~~~~gi~~~~~~~~~ 68 (189)
T TIGR02432 47 AEFVQQFCKKLNIPLEIKKVDV 68 (189)
T ss_pred HHHHHHHHHHcCCCEEEEEecc
Confidence 8999999999999999999864
No 93
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=97.64 E-value=0.00026 Score=80.39 Aligned_cols=87 Identities=21% Similarity=0.204 Sum_probs=59.6
Q ss_pred cHHHHHhhHHHHHHHHHHHh--CCCeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCc
Q 009537 241 PEEEIAFGPGCWLWDYLRRS--GASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTE 318 (532)
Q Consensus 241 peeei~~~~a~~L~dylrrs--~~~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~ 318 (532)
.++|.......-|.+-+++. ....+.+.||||+|||++|++++ + ....
T Consensus 235 ~~~e~~e~l~~~l~~aV~~rl~~d~~vg~~LSGGlDSs~Iaa~~~-------~---------------~~~~-------- 284 (628)
T TIGR03108 235 SEADALAELIERLREAVRSRMVADVPLGAFLSGGVDSSAVVALMA-------G---------------LSDT-------- 284 (628)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCcceEeecCCccHHHHHHHHH-------H---------------hcCC--------
Confidence 45665566666666666543 22456788999999999988774 1 1111
Q ss_pred hhhccCCeEEEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEechHH
Q 009537 319 SREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTV 364 (532)
Q Consensus 319 ~~e~~~~~~~t~~m~t~nSs~~t~~~A~~LA~~iG~~h~~i~Id~~ 364 (532)
.+.|+.++...+...+...|+.+|+.+|..|+++.+++.
T Consensus 285 -------~i~t~s~~~~~~~~dE~~~A~~vA~~~g~~h~~~~~~~~ 323 (628)
T TIGR03108 285 -------PVNTCSIAFDDPAFDESAYARQVAERYGTNHRVETVDPD 323 (628)
T ss_pred -------CCcEEEEecCCCCCChHHHHHHHHHHhCCCCeEEecCHH
Confidence 145555554444456778999999999999999988753
No 94
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=97.57 E-value=0.00019 Score=77.05 Aligned_cols=99 Identities=19% Similarity=0.245 Sum_probs=65.2
Q ss_pred eEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeCCCCCCHHHHH
Q 009537 264 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRM 343 (532)
Q Consensus 264 g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~t~nSs~~t~~ 343 (532)
+++|++|||+||++++.++. + .+ . .++++++-+.. ..++.+
T Consensus 1 kVvla~SGGlDSsvll~~l~-------e---------------~g-~---------------~V~av~id~Gq-~~~e~~ 41 (394)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWLR-------E---------------KG-Y---------------EVIAYTADVGQ-PEEDID 41 (394)
T ss_pred CEEEEEcCCHHHHHHHHHHH-------H---------------cC-C---------------EEEEEEEecCC-ChHHHH
Confidence 47899999999999888763 1 22 2 37888887653 367899
Q ss_pred HHHHHHHHhCC-ceEEEechH-HHHHH-HHHhh-hh--hCCCCCCc-----------ch-hhhcCCCEeeeceeeE
Q 009537 344 RAKKLADEIGS-WHLDVSIDT-VVSAF-LSLFQ-TL--TGKRPRYK-----------LD-EVDMGMTYEELSVYGR 401 (532)
Q Consensus 344 ~A~~LA~~iG~-~h~~i~Id~-~v~a~-~~~f~-~~--~g~~p~~~-----------tD-E~dmGmtY~~L~~~~r 401 (532)
.|+++|+.+|+ +|+.+|+++ ..+.+ ...+. .. -|+-|.-. .+ ..+.|+++...++.+.
T Consensus 42 ~a~~~a~~lGi~~~~viD~~~ef~~~~~~~~i~~n~~y~~~Y~l~t~laR~li~~~l~~~A~~~G~~~Ia~G~t~~ 117 (394)
T TIGR00032 42 AIPEKALEYGAENHYTIDAREEFVKDYGFAAIQANAFYEGTYPLSTALARPLIAKKLVEAAKKEGANAVAHGCTGK 117 (394)
T ss_pred HHHHHHHHhCCCeEEEEeCHHHHHHhhchhhhcCCccccCcccccchhhHHHHHHHHHHHHHHcCCCEEEECccCC
Confidence 99999999998 899999974 43442 11111 11 12211111 11 2357999999987553
No 95
>PLN00200 argininosuccinate synthase; Provisional
Probab=97.53 E-value=0.00026 Score=76.17 Aligned_cols=99 Identities=15% Similarity=0.180 Sum_probs=67.0
Q ss_pred CeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeCCCCCCHHHH
Q 009537 263 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 342 (532)
Q Consensus 263 ~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~t~nSs~~t~ 342 (532)
+.++|++|||+||++++.++. +. .+. .|+++++.+.. ..++.
T Consensus 6 ~kVvva~SGGlDSsvla~~L~-------e~--------------~G~----------------eViav~id~Gq-~~~el 47 (404)
T PLN00200 6 NKVVLAYSGGLDTSVILKWLR-------EN--------------YGC----------------EVVCFTADVGQ-GIEEL 47 (404)
T ss_pred CeEEEEEeCCHHHHHHHHHHH-------Hh--------------hCC----------------eEEEEEEECCC-ChHHH
Confidence 589999999999999888773 22 232 38888888764 45689
Q ss_pred HHHHHHHHHhCCce-EEEechHHHH-HHHHHhhhhhCCCC----CCc-------------ch-hhhcCCCEeeeceeeE
Q 009537 343 MRAKKLADEIGSWH-LDVSIDTVVS-AFLSLFQTLTGKRP----RYK-------------LD-EVDMGMTYEELSVYGR 401 (532)
Q Consensus 343 ~~A~~LA~~iG~~h-~~i~Id~~v~-a~~~~f~~~~g~~p----~~~-------------tD-E~dmGmtY~~L~~~~r 401 (532)
+.|+++|+.+|+.| +.+|+.+.+. .++ +..+....+ -|+ .+ ..++|+++...++.++
T Consensus 48 ~~a~~~A~~lGi~~~~v~dl~~ef~~~~i--~p~i~~Na~ye~~Y~~~tsl~Rp~i~~~lv~~A~~~G~~~VahG~tgk 124 (404)
T PLN00200 48 EGLEAKAKASGAKQLVVKDLREEFVRDYI--FPCLRANAIYEGKYLLGTSMARPLIAKAMVDIAKEVGADAVAHGATGK 124 (404)
T ss_pred HHHHHHHHHcCCCEEEEEeCHHHHHHhhc--CHHHHcCCcccceeccccchhhHHHHHHHHHHHHHcCCCEEEeCCcCC
Confidence 99999999999975 7777765543 222 111111111 111 12 3368999999999986
No 96
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=97.52 E-value=0.00047 Score=73.76 Aligned_cols=96 Identities=16% Similarity=0.117 Sum_probs=62.0
Q ss_pred CeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeCCCCCCHHHH
Q 009537 263 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 342 (532)
Q Consensus 263 ~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~t~nSs~~t~ 342 (532)
+.++++||||+||+++|.++. + .|. .+.++++- .++.+.
T Consensus 181 gkvlvllSGGiDSpVAa~ll~-------k---------------rG~----------------~V~~v~f~---~g~~~~ 219 (381)
T PRK08384 181 GKVVALLSGGIDSPVAAFLMM-------K---------------RGV----------------EVIPVHIY---MGEKTL 219 (381)
T ss_pred CcEEEEEeCChHHHHHHHHHH-------H---------------cCC----------------eEEEEEEE---eCHHHH
Confidence 579999999999999988874 2 343 37788884 447789
Q ss_pred HHHHHHHHHhCCc-------eEEEechHHHHHHHHHhhhhhCCCCCCc------------chhhhcCCCEeeeceeeE
Q 009537 343 MRAKKLADEIGSW-------HLDVSIDTVVSAFLSLFQTLTGKRPRYK------------LDEVDMGMTYEELSVYGR 401 (532)
Q Consensus 343 ~~A~~LA~~iG~~-------h~~i~Id~~v~a~~~~f~~~~g~~p~~~------------tDE~dmGmtY~~L~~~~r 401 (532)
+.|+++|+.||.+ ++.++... .+.+...+.+..... ..| .-..+.|.++..++|+..
T Consensus 220 e~v~~la~~L~~~~~~~~i~l~~v~~~~-~~~v~~~i~~~~~~~-~~C~~Ckr~m~r~a~~iA~~~g~~~IaTGhslg 295 (381)
T PRK08384 220 EKVRKIWNQLKKYHYGGKAELIVVKPQE-RERIIQKLKELKKEN-YTCVFCKFMMVKHADRIAKEFGAKGIVMGDSLG 295 (381)
T ss_pred HHHHHHHHHhcccccCCcceEEEEChHH-HHHHHHHHHHhccCC-CchHHHHHHHHHHHHHHHHHcCCCEEEEcccch
Confidence 9999999999955 55555532 112333332211111 123 112358999999998764
No 97
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=97.51 E-value=0.00053 Score=77.38 Aligned_cols=85 Identities=20% Similarity=0.147 Sum_probs=55.3
Q ss_pred HHHHHhhHHHHHHHHHHHh--CCCeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCch
Q 009537 242 EEEIAFGPGCWLWDYLRRS--GASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTES 319 (532)
Q Consensus 242 eeei~~~~a~~L~dylrrs--~~~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~ 319 (532)
++|.......-|.+=+++. ....+.+.||||+|||++|+++.. .+..
T Consensus 238 ~~~~~~~l~~~L~~AV~~rl~sd~pvg~~LSGGlDSs~Iaa~~~~----------------------~~~~--------- 286 (589)
T TIGR03104 238 EADWQDAILEALRLAVKRRLVADVPVGVLLSGGLDSSLIVGLLAE----------------------AGVD--------- 286 (589)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCceeEEecCCccHHHHHHHHHH----------------------hcCC---------
Confidence 4444333333343433332 235688999999999999988741 2221
Q ss_pred hhccCCeEEEEEeCCCCCC---HHHHHHHHHHHHHhCCceEEEechH
Q 009537 320 REFAKRIFYTVFMGSENSS---QETRMRAKKLADEIGSWHLDVSIDT 363 (532)
Q Consensus 320 ~e~~~~~~~t~~m~t~nSs---~~t~~~A~~LA~~iG~~h~~i~Id~ 363 (532)
.+.|+..+...+. -.+...|+++|+.+|..|+.+.+++
T Consensus 287 ------~l~tftigf~~~~~~~~dE~~~A~~vA~~~g~~h~~i~~~~ 327 (589)
T TIGR03104 287 ------GLRTFSIGFEDVGGEKGDEFEYSDIIAERFHTRHHKIRIPN 327 (589)
T ss_pred ------CceEEEEEecCCCCCCCChHHHHHHHHHHhCCcCeEEEcCH
Confidence 2556666654432 3567899999999999999998864
No 98
>PRK14561 hypothetical protein; Provisional
Probab=97.48 E-value=0.00027 Score=68.69 Aligned_cols=60 Identities=25% Similarity=0.248 Sum_probs=43.3
Q ss_pred eEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeCCCCCCHHHHH
Q 009537 264 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRM 343 (532)
Q Consensus 264 g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~t~nSs~~t~~ 343 (532)
.++|++|||+||+++|+++. . . .+- .+.++..+. ..+.+
T Consensus 2 kV~ValSGG~DSslll~~l~--------~--------------~-~~v--------------~a~t~~~g~----~~e~~ 40 (194)
T PRK14561 2 KAGVLFSGGKDSSLAAILLE--------R--------------F-YDV--------------ELVTVNFGV----LDSWK 40 (194)
T ss_pred EEEEEEechHHHHHHHHHHH--------h--------------c-CCe--------------EEEEEecCc----hhHHH
Confidence 47899999999999887652 1 1 010 133444442 24588
Q ss_pred HHHHHHHHhCCceEEEechHH
Q 009537 344 RAKKLADEIGSWHLDVSIDTV 364 (532)
Q Consensus 344 ~A~~LA~~iG~~h~~i~Id~~ 364 (532)
.|+.+|+.+|++|+.++++.-
T Consensus 41 ~a~~~a~~lGi~~~~v~~~~~ 61 (194)
T PRK14561 41 HAREAAKALGFPHRVLELDRE 61 (194)
T ss_pred HHHHHHHHhCCCEEEEECCHH
Confidence 999999999999999999874
No 99
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=97.46 E-value=0.00051 Score=73.26 Aligned_cols=96 Identities=19% Similarity=0.117 Sum_probs=65.9
Q ss_pred CeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeCCC-CCCHHH
Q 009537 263 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSE-NSSQET 341 (532)
Q Consensus 263 ~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~t~-nSs~~t 341 (532)
+.++++||||+||+++|+++. + .|. .++++++.+. ..+.++
T Consensus 173 ~kvlvllSGGiDS~vaa~ll~-------k---------------rG~----------------~V~av~~~~~~~~~~~~ 214 (371)
T TIGR00342 173 GKVLALLSGGIDSPVAAFMMM-------K---------------RGC----------------RVVAVHFFNEPAASEKA 214 (371)
T ss_pred CeEEEEecCCchHHHHHHHHH-------H---------------cCC----------------eEEEEEEeCCCCccHHH
Confidence 579999999999999888873 1 232 3788888765 355788
Q ss_pred HHHHHHHHHHhC-----CceEEEechHHHHHHHHHhhhhhCCCCCCc------------chhhhcCCCEeeeceeeE
Q 009537 342 RMRAKKLADEIG-----SWHLDVSIDTVVSAFLSLFQTLTGKRPRYK------------LDEVDMGMTYEELSVYGR 401 (532)
Q Consensus 342 ~~~A~~LA~~iG-----~~h~~i~Id~~v~a~~~~f~~~~g~~p~~~------------tDE~dmGmtY~~L~~~~r 401 (532)
.+.|+.+|+.++ +.++.+|+.++...+..... .+..| .-..+.|.++..+++.+-
T Consensus 215 ~~~v~~l~~~l~~~~~~~~l~~v~~~~~~~~i~~~~~-----~~~~cv~cRr~m~~~a~~~A~~~g~~~I~tG~~l~ 286 (371)
T TIGR00342 215 REKVERLANSLNETGGSVKLYVFDFTDVQEEIIHIIP-----EGYTCVLCRRMMYKAASKVAEKEGCLAIVTGESLG 286 (371)
T ss_pred HHHHHHHHHHHhhcCCCceEEEEeCHHHHHHHHhcCC-----CCceeHhHHHHHHHHHHHHHHHcCCCEEEEccChH
Confidence 899999999983 47888998887655433211 11122 112247888888876543
No 100
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=97.45 E-value=0.00036 Score=66.20 Aligned_cols=62 Identities=19% Similarity=0.271 Sum_probs=46.9
Q ss_pred eEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeCCCCCC--HHH
Q 009537 264 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSS--QET 341 (532)
Q Consensus 264 g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~t~nSs--~~t 341 (532)
.++|++|||+||++++.++. +... ..+ . .+.++++.+.... .++
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~-------~~~~-----------~~~-~---------------~v~~v~id~~~~~~~~~~ 46 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLS-------ELKP-----------RLG-L---------------RLVAVHVDHGLRPESDEE 46 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHH-------HHHH-----------HcC-C---------------cEEEEEecCCCCchHHHH
Confidence 37999999999999988874 2200 011 1 3788888866433 589
Q ss_pred HHHHHHHHHHhCCceEEE
Q 009537 342 RMRAKKLADEIGSWHLDV 359 (532)
Q Consensus 342 ~~~A~~LA~~iG~~h~~i 359 (532)
.+.++++|+.+|+.+..+
T Consensus 47 ~~~~~~~~~~~~i~~~~~ 64 (185)
T cd01992 47 AAFVADLCAKLGIPLYIL 64 (185)
T ss_pred HHHHHHHHHHcCCcEEEE
Confidence 999999999999999887
No 101
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=97.45 E-value=0.00089 Score=75.06 Aligned_cols=101 Identities=23% Similarity=0.241 Sum_probs=59.3
Q ss_pred HHHHhhHHHHHHHHHHHh--CCCeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhc--ccCCCCCCCc
Q 009537 243 EEIAFGPGCWLWDYLRRS--GASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIG--RYANGEFPTE 318 (532)
Q Consensus 243 eei~~~~a~~L~dylrrs--~~~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~--~~~~~~~p~~ 318 (532)
++....+-.-|.+=+++. .-..+-+.||||+|||++|+|+.. .... ++. .....|-|
T Consensus 206 ~~~~~~lr~~L~~aV~~rl~sdvpvGv~LSGGLDSSlIaala~~-------~~~~----------~~~~~~~~~~~~~-- 266 (554)
T PRK09431 206 VTDKNELRDALEAAVKKRLMSDVPYGVLLSGGLDSSLISAIAKK-------YAAR----------RIEDDERSEAWWP-- 266 (554)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCceEEEcCCCccHHHHHHHHHH-------hhcc----------cccccccccccCC--
Confidence 343333333344444432 124678999999999999999852 1000 000 00000111
Q ss_pred hhhccCCeEEEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEech--HHHHHHHHH
Q 009537 319 SREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSID--TVVSAFLSL 371 (532)
Q Consensus 319 ~~e~~~~~~~t~~m~t~nSs~~t~~~A~~LA~~iG~~h~~i~Id--~~v~a~~~~ 371 (532)
.++|...+...+. +...|+.+|+.||..|+++.++ ++.+++..+
T Consensus 267 -------~l~tfsig~~~~~--D~~~A~~vA~~lg~~h~~v~~t~~e~~~~l~~v 312 (554)
T PRK09431 267 -------QLHSFAVGLEGSP--DLKAAREVADHLGTVHHEIHFTVQEGLDALRDV 312 (554)
T ss_pred -------CceEEEEeCCCCC--hHHHHHHHHHHhCCccEEEEeCHHHHHHHHHHH
Confidence 2667777765543 7889999999999999999874 444444433
No 102
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=97.43 E-value=0.00071 Score=76.27 Aligned_cols=98 Identities=32% Similarity=0.328 Sum_probs=58.9
Q ss_pred HHHhhHHHHHHHHHHHhCCCeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhcc
Q 009537 244 EIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFA 323 (532)
Q Consensus 244 ei~~~~a~~L~dylrrs~~~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~ 323 (532)
++...+...+...|+ .-..+-+.||||+|||++|+|+.. ...++. + +. +. ..
T Consensus 221 ~lr~~L~~AV~~rl~--sdvpvGv~LSGGLDSSlIaala~~-------~~~~~~---------~--~~----~~----~~ 272 (586)
T PTZ00077 221 EIREALEAAVRKRLM--GDVPFGLFLSGGLDSSIVAAIVAK-------LIKNGE---------I--DL----SK----RG 272 (586)
T ss_pred HHHHHHHHHHHHHhc--CCCceEEEecCCchHHHHHHHHHH-------hhcccc---------c--cc----cc----cc
Confidence 344444444444443 224688999999999999999852 111000 0 00 00 00
Q ss_pred CCeEEEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEec--hHHHHHHHHH
Q 009537 324 KRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSI--DTVVSAFLSL 371 (532)
Q Consensus 324 ~~~~~t~~m~t~nSs~~t~~~A~~LA~~iG~~h~~i~I--d~~v~a~~~~ 371 (532)
...++|...+...+ .++..|+++|+.||..|+++.+ ++..+++.+.
T Consensus 273 ~~~l~tfsig~~~~--~D~~~Ar~vA~~lg~~h~~i~~~~~e~~~~l~~~ 320 (586)
T PTZ00077 273 MPKLHSFCIGLEGS--PDLKAARKVAEYLGTEHHEFTFTVEEGIDALPDV 320 (586)
T ss_pred CCCceEEEcCCCCC--chHHHHHHHHHHhCCcCcEEEECHHHHHHHHHHH
Confidence 01367777776553 4678999999999999988865 4555555444
No 103
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=97.42 E-value=0.00098 Score=62.68 Aligned_cols=87 Identities=22% Similarity=0.236 Sum_probs=55.7
Q ss_pred eEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeCCCCCCHHHHH
Q 009537 264 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRM 343 (532)
Q Consensus 264 g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~t~nSs~~t~~ 343 (532)
.++|++|||+||++++.++. + .+. .++++++.....+....+
T Consensus 1 kvlv~~SGG~DS~~~~~~~~-------~---------------~~~----------------~v~~~~~~~~~~~~~~~~ 42 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAK-------K---------------EGY----------------EVHALSFDYGQRHAKEEE 42 (169)
T ss_pred CEEEEecCcHHHHHHHHHHH-------H---------------cCC----------------cEEEEEEECCCCChhHHH
Confidence 37899999999999887763 1 221 266777765434455669
Q ss_pred HHHHHHHHhCCceEEEechHHHHHHHHHhhhhhCCCCCCcchhhhcCCCEeeeceeeE
Q 009537 344 RAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPRYKLDEVDMGMTYEELSVYGR 401 (532)
Q Consensus 344 ~A~~LA~~iG~~h~~i~Id~~v~a~~~~f~~~~g~~p~~~tDE~dmGmtY~~L~~~~r 401 (532)
.++.+|+.+| .+..++..... +...+... . .+.|+++..+++..-
T Consensus 43 ~~~~~~~~~g-~~~~~~~~~~~--~~~~l~~~--------a--~~~g~~~i~~G~~~~ 87 (169)
T cd01995 43 AAKLIAEKLG-PSTYVPARNLI--FLSIAAAY--------A--EALGAEAIIIGVNAE 87 (169)
T ss_pred HHHHHHHHHC-CCEEEeCcCHH--HHHHHHHH--------H--HHCCCCEEEEeeccC
Confidence 9999999999 55555443321 11222211 1 247899988887764
No 104
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=97.42 E-value=0.00033 Score=75.01 Aligned_cols=98 Identities=19% Similarity=0.269 Sum_probs=65.9
Q ss_pred EEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeCCCCCCHHHHHH
Q 009537 265 FLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMR 344 (532)
Q Consensus 265 ~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~t~nSs~~t~~~ 344 (532)
++|++|||+||++++.++. +. +.. .|+++++...... +..+.
T Consensus 1 Vvva~SGGlDSsvll~~l~-------e~---------------~~~---------------eV~av~~d~Gq~~-~~~e~ 42 (385)
T cd01999 1 VVLAYSGGLDTSVILKWLK-------EK---------------GGY---------------EVIAVTADVGQPE-EEIEA 42 (385)
T ss_pred CEEEecCCHHHHHHHHHHH-------Hh---------------CCC---------------eEEEEEEECCCcc-hhHHH
Confidence 5899999999999888773 22 221 3788888766543 33589
Q ss_pred HHHHHHHhCCc-eEEEechHHHHH-H-HHHhhh-h--hCCCCCCc-----------ch-hhhcCCCEeeeceee
Q 009537 345 AKKLADEIGSW-HLDVSIDTVVSA-F-LSLFQT-L--TGKRPRYK-----------LD-EVDMGMTYEELSVYG 400 (532)
Q Consensus 345 A~~LA~~iG~~-h~~i~Id~~v~a-~-~~~f~~-~--~g~~p~~~-----------tD-E~dmGmtY~~L~~~~ 400 (532)
|+++|+.+|+. |+.+|+++.+.. + ...+.. . -|..|..+ .. ..+.|+++...+.-+
T Consensus 43 a~~~a~~lG~~~~~viD~~~ef~~~~i~~~i~an~~~~g~y~l~t~l~R~~i~~~l~~~A~~~Ga~~VA~G~t~ 116 (385)
T cd01999 43 IEEKALKLGAKKHVVVDLREEFVEDYIFPAIQANALYEGTYPLGTALARPLIAKALVEVAKEEGADAVAHGCTG 116 (385)
T ss_pred HHHHHHHcCCCEEEEeccHHHHHHHhhHHHHHhCccccCCCcCCcHhHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 99999999996 999999875553 2 222221 1 15455432 11 225899998887765
No 105
>PRK08576 hypothetical protein; Provisional
Probab=97.34 E-value=0.001 Score=72.22 Aligned_cols=68 Identities=22% Similarity=0.339 Sum_probs=52.5
Q ss_pred HHHHHHhCCCeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeC
Q 009537 254 WDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMG 333 (532)
Q Consensus 254 ~dylrrs~~~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~ 333 (532)
.++|++-+...++|++|||.||++++.++. ++ .+ .+.++++.
T Consensus 226 ~~~Lr~~~~~rVvVafSGGKDStvLL~La~-------k~--------------~~-----------------~V~aV~iD 267 (438)
T PRK08576 226 IKFLRKFEEWTVIVPWSGGKDSTAALLLAK-------KA--------------FG-----------------DVTAVYVD 267 (438)
T ss_pred HHHHHHcCCCCEEEEEcChHHHHHHHHHHH-------Hh--------------CC-----------------CCEEEEeC
Confidence 344555555589999999999999887763 32 11 15678888
Q ss_pred CCCCCHHHHHHHHHHHHHhCCceEEE
Q 009537 334 SENSSQETRMRAKKLADEIGSWHLDV 359 (532)
Q Consensus 334 t~nSs~~t~~~A~~LA~~iG~~h~~i 359 (532)
|....++|.+.++++|+.+|+.++..
T Consensus 268 TG~e~pet~e~~~~lae~LGI~lii~ 293 (438)
T PRK08576 268 TGYEMPLTDEYVEKVAEKLGVDLIRA 293 (438)
T ss_pred CCCCChHHHHHHHHHHHHcCCCEEEc
Confidence 77777899999999999999999873
No 106
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=97.25 E-value=0.0011 Score=70.54 Aligned_cols=77 Identities=35% Similarity=0.468 Sum_probs=54.0
Q ss_pred CeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeCCCCCCHHHH
Q 009537 263 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 342 (532)
Q Consensus 263 ~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~t~nSs~~t~ 342 (532)
..|-+-||||.|||++|+|+. +.++.- .+.+ + . .+|+.-.+-++|. +.
T Consensus 226 ~p~GvLLSGGLDSSLvAsia~-------R~lk~~------~~~~-~-~---------------~lhsFaIGle~SP--DL 273 (543)
T KOG0571|consen 226 VPFGVLLSGGLDSSLVASIAA-------RELKKA------QAAR-G-S---------------KLHSFAIGLEDSP--DL 273 (543)
T ss_pred CceeEEeeCCchHHHHHHHHH-------HHHHHh------hhhc-C-C---------------CceEEEecCCCCh--hH
Confidence 467788999999999999996 332210 0001 1 1 3788888888774 78
Q ss_pred HHHHHHHHHhCCceEEE--echHHHHHHHHH
Q 009537 343 MRAKKLADEIGSWHLDV--SIDTVVSAFLSL 371 (532)
Q Consensus 343 ~~A~~LA~~iG~~h~~i--~Id~~v~a~~~~ 371 (532)
..|+++|+-||+.|+++ ++++-.+++-++
T Consensus 274 ~aarkVAd~igt~Hhe~~ft~qegidal~eV 304 (543)
T KOG0571|consen 274 LAARKVADFIGTIHHEHTFTIQEGIDALDEV 304 (543)
T ss_pred HHHHHHHHHhCCcceEEEEcHHHHHHHHHHH
Confidence 99999999999999775 455555555443
No 107
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=97.24 E-value=0.0015 Score=73.54 Aligned_cols=78 Identities=28% Similarity=0.285 Sum_probs=50.1
Q ss_pred CeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeCCCCCCHHHH
Q 009537 263 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 342 (532)
Q Consensus 263 ~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~t~nSs~~t~ 342 (532)
..+.+.||||+|||++|+++.. .++. -. ....+. ..++|...+...+ .++
T Consensus 226 vpvgv~LSGGLDSSlIaala~~-------~~~~-----------~~-~~~~~~---------~~l~tfsig~~~~--~D~ 275 (578)
T PLN02549 226 VPFGVLLSGGLDSSLVASIAAR-------HLAE-----------TK-AARQWG---------QQLHSFCVGLEGS--PDL 275 (578)
T ss_pred CceeEeecCCccHHHHHHHHHH-------hhhh-----------cc-cccccC---------CCceEEecCCCCC--CHH
Confidence 4588999999999999999852 2110 00 000000 1266666666553 467
Q ss_pred HHHHHHHHHhCCceEEEech--HHHHHHHH
Q 009537 343 MRAKKLADEIGSWHLDVSID--TVVSAFLS 370 (532)
Q Consensus 343 ~~A~~LA~~iG~~h~~i~Id--~~v~a~~~ 370 (532)
..|+.+|+.||..|+++.++ ++.+.+..
T Consensus 276 ~~Ar~vA~~lg~~h~ev~~~~~e~~~~l~~ 305 (578)
T PLN02549 276 KAAREVADYLGTVHHEFHFTVQEGIDAIED 305 (578)
T ss_pred HHHHHHHHHhCCCCeEEEEChHHHHHHHHH
Confidence 89999999999999987764 34444433
No 108
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=97.17 E-value=0.00053 Score=65.55 Aligned_cols=68 Identities=24% Similarity=0.238 Sum_probs=42.6
Q ss_pred eEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeCCCCCCHHHHH
Q 009537 264 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRM 343 (532)
Q Consensus 264 g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~t~nSs~~t~~ 343 (532)
+++|++|||.||.+.+.++.. +++..+.. -.+.++-.+....|.+...
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~-------------------~~~~~~~~-------------~~~~~vdh~~~~~s~~~~~ 48 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKE-------------------LRRRNGIK-------------LIAVHVDHGLREESDEEAE 48 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHH-------------------HHTTTTTE-------------EEEEEEE-STSCCHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHH-------------------HHHhcCCC-------------eEEEEEecCCCcccchhHH
Confidence 479999999999988777642 11111110 0234444445556778889
Q ss_pred HHHHHHHHhCCceEEEechH
Q 009537 344 RAKKLADEIGSWHLDVSIDT 363 (532)
Q Consensus 344 ~A~~LA~~iG~~h~~i~Id~ 363 (532)
..+++|+++|+++...+++.
T Consensus 49 ~v~~~~~~~~i~~~~~~~~~ 68 (182)
T PF01171_consen 49 FVEEICEQLGIPLYIVRIDE 68 (182)
T ss_dssp HHHHHHHHTT-EEEEEE--C
T ss_pred HHHHHHHhcCCceEEEEeee
Confidence 99999999999999999986
No 109
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]
Probab=97.14 E-value=0.0017 Score=65.97 Aligned_cols=67 Identities=24% Similarity=0.316 Sum_probs=49.1
Q ss_pred hCCCeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeCCCCCCH
Q 009537 260 SGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQ 339 (532)
Q Consensus 260 s~~~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~t~nSs~ 339 (532)
-|.+.++++||||+|||++|+|++ +| +| + .++++|..+.--..
T Consensus 19 vg~~kvi~alSGGVDSsv~a~L~~-------~A--------------iG-d---------------~l~cvfVD~GLlR~ 61 (315)
T COG0519 19 VGDGKVILALSGGVDSSVAAVLAH-------RA--------------IG-D---------------QLTCVFVDHGLLRK 61 (315)
T ss_pred hCCceEEEEecCCCcHHHHHHHHH-------HH--------------hh-c---------------ceEEEEecCCcccC
Confidence 367899999999999999999996 67 54 3 48899888654443
Q ss_pred HHHH-HHHHHHHHhCCceEEEechH
Q 009537 340 ETRM-RAKKLADEIGSWHLDVSIDT 363 (532)
Q Consensus 340 ~t~~-~A~~LA~~iG~~h~~i~Id~ 363 (532)
...+ --+.+.+.+|+....+|-.+
T Consensus 62 ~E~e~V~~~f~~~~~~nl~~VdA~~ 86 (315)
T COG0519 62 GEAEQVVEMFREHLGLNLIVVDAKD 86 (315)
T ss_pred CcHHHHHHHHHhhcCCceEEEchHH
Confidence 3333 34455666898888887643
No 110
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=97.11 E-value=0.0034 Score=70.20 Aligned_cols=91 Identities=26% Similarity=0.207 Sum_probs=60.9
Q ss_pred HHHHHhhHHHHHHHHHHHhC--CCeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCch
Q 009537 242 EEEIAFGPGCWLWDYLRRSG--ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTES 319 (532)
Q Consensus 242 eeei~~~~a~~L~dylrrs~--~~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~ 319 (532)
.++....+..-|.+=+++.- -..+.+-||||+|||++|+++.. .....
T Consensus 208 ~~~~~~~l~~~l~~sV~~r~~advpvg~~lSGGlDSS~Iaa~a~~----------------------~~~~~-------- 257 (542)
T COG0367 208 ADELAEHLRSLLEDAVKRRLVADVPVGVFLSGGLDSSLIAAIAAE----------------------ELGKE-------- 257 (542)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCcEEEEeCCCccHHHHHHHHHH----------------------hcccc--------
Confidence 34555555555666665543 46788889999999999999852 11111
Q ss_pred hhccCCeEEEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEech--HHHHHH
Q 009537 320 REFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSID--TVVSAF 368 (532)
Q Consensus 320 ~e~~~~~~~t~~m~t~nSs~~t~~~A~~LA~~iG~~h~~i~Id--~~v~a~ 368 (532)
..+|...+.+++...+...|+.+|+.||..|+.+.+. ++.+++
T Consensus 258 ------~~~~fsvg~~~~~~~D~~~a~~~A~~lg~~h~~~~~~~~e~~~~~ 302 (542)
T COG0367 258 ------GKTTFTVGFEDSDSPDAKYARAVAKFLGTPHHEIILTNEELLNAL 302 (542)
T ss_pred ------ceeeeEeecCCCCCchHHHHHHHHHHhCCCcEEEeecHHHHHHHH
Confidence 1223455555665668899999999999998877664 444443
No 111
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=97.06 E-value=0.0016 Score=64.45 Aligned_cols=24 Identities=8% Similarity=0.062 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHhCCceEEEech
Q 009537 339 QETRMRAKKLADEIGSWHLDVSID 362 (532)
Q Consensus 339 ~~t~~~A~~LA~~iG~~h~~i~Id 362 (532)
....+.|+.+|+.+|++|..++++
T Consensus 42 ~~~~~~~~~~A~~lgip~~~i~~~ 65 (218)
T TIGR03679 42 TPNIELTRLQAEALGIPLVKIETS 65 (218)
T ss_pred CCCHHHHHHHHHHhCCCEEEEECC
Confidence 346789999999999999999997
No 112
>PRK13795 hypothetical protein; Provisional
Probab=97.04 E-value=0.0037 Score=71.27 Aligned_cols=84 Identities=19% Similarity=0.202 Sum_probs=63.8
Q ss_pred HHHHhhHHHHHHHHHHHhCCCeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhc
Q 009537 243 EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREF 322 (532)
Q Consensus 243 eei~~~~a~~L~dylrrs~~~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~ 322 (532)
+++......+|+.++.+. ...++|++|||.||++++.|+. ++ . .
T Consensus 225 ~~~~~~ai~~Ir~~~~~~-~~~v~Va~SGGKDS~vll~L~~-------~a--------------~-~------------- 268 (636)
T PRK13795 225 EEKEKEAVNFIRGVAEKY-NLPVSVSFSGGKDSLVVLDLAR-------EA--------------L-K------------- 268 (636)
T ss_pred HHHHHHHHHHHHHHHHHc-CCCEEEEecCcHHHHHHHHHHH-------Hh--------------C-C-------------
Confidence 344444555677766655 3579999999999999998874 33 1 1
Q ss_pred cCCeEEEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEechHHH
Q 009537 323 AKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVV 365 (532)
Q Consensus 323 ~~~~~~t~~m~t~nSs~~t~~~A~~LA~~iG~~h~~i~Id~~v 365 (532)
.+..+|..|....++|.+.++++++.+|+.+..++.+..+
T Consensus 269 ---~~~vvfiDTg~efpet~e~v~~~~~~~gi~i~~~~~~~~f 308 (636)
T PRK13795 269 ---DFKAFFNNTGLEFPETVENVKEVAEEYGIELIEADAGDAF 308 (636)
T ss_pred ---CcEEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEcccHhH
Confidence 1567788887778999999999999999999998886443
No 113
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.87 E-value=0.0018 Score=66.12 Aligned_cols=69 Identities=20% Similarity=0.223 Sum_probs=48.6
Q ss_pred CeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeCCCCCCHHHH
Q 009537 263 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 342 (532)
Q Consensus 263 ~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~t~nSs~~t~ 342 (532)
..++|++|||-||++++.++.. +...- +-.+.++--+-...+....
T Consensus 22 ~~ilVavSGGkDS~~ll~~L~~----------------------l~~~~------------~~~a~~Vd~~~~~~~~~~~ 67 (298)
T COG0037 22 YKILVAVSGGKDSLALLHLLKE----------------------LGRRI------------EVEAVHVDHGLRGYSDQEA 67 (298)
T ss_pred CeEEEEeCCChHHHHHHHHHHH----------------------hccCc------------eEEEEEecCCCCCccchHH
Confidence 7999999999999998888742 11100 0023444444333448888
Q ss_pred HHHHHHHHHhCCceEEEechHHH
Q 009537 343 MRAKKLADEIGSWHLDVSIDTVV 365 (532)
Q Consensus 343 ~~A~~LA~~iG~~h~~i~Id~~v 365 (532)
..++.+|+.+|+++...+++..+
T Consensus 68 ~~~~~~~~~~~~~~~v~~~~~~~ 90 (298)
T COG0037 68 ELVEKLCEKLGIPLIVERVTDDL 90 (298)
T ss_pred HHHHHHHHHhCCceEEEEEEeec
Confidence 99999999999999888886543
No 114
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=96.77 E-value=0.003 Score=63.92 Aligned_cols=69 Identities=16% Similarity=0.108 Sum_probs=44.8
Q ss_pred CCeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeCCCCCCHHH
Q 009537 262 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQET 341 (532)
Q Consensus 262 ~~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~t~nSs~~t 341 (532)
...++|++|||.||++++.++..+ ++..... -.+.+++.....++ .+
T Consensus 29 ~~kilVa~SGG~DS~~LL~ll~~l-------------------~~~~~~~-------------~~l~av~vd~g~~~-~~ 75 (258)
T PRK10696 29 GDRVMVCLSGGKDSYTLLDILLNL-------------------QKRAPIN-------------FELVAVNLDQKQPG-FP 75 (258)
T ss_pred CCEEEEEecCCHHHHHHHHHHHHH-------------------HHhCCCC-------------eEEEEEEecCCCCC-CC
Confidence 358999999999999988777421 0011100 02566665443322 22
Q ss_pred HHHHHHHHHHhCCceEEEechH
Q 009537 342 RMRAKKLADEIGSWHLDVSIDT 363 (532)
Q Consensus 342 ~~~A~~LA~~iG~~h~~i~Id~ 363 (532)
.+.++++|+++|+.|+.++++.
T Consensus 76 ~~~~~~~~~~lgI~~~v~~~~~ 97 (258)
T PRK10696 76 EHVLPEYLESLGVPYHIEEQDT 97 (258)
T ss_pred HHHHHHHHHHhCCCEEEEEecc
Confidence 3357899999999999988763
No 115
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=96.75 E-value=0.0035 Score=61.31 Aligned_cols=72 Identities=22% Similarity=0.237 Sum_probs=49.9
Q ss_pred CeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeC-CCCCCHHH
Q 009537 263 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMG-SENSSQET 341 (532)
Q Consensus 263 ~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~-t~nSs~~t 341 (532)
..+++.||||+||.+.|.++. + .|. .|+++++- ....++.+
T Consensus 4 gk~l~LlSGGiDSpVAa~lm~-------k---------------rG~----------------~V~~l~f~~~~~~~~~~ 45 (197)
T PF02568_consen 4 GKALALLSGGIDSPVAAWLMM-------K---------------RGC----------------EVIALHFDSPPFTGEKA 45 (197)
T ss_dssp -EEEEE-SSCCHHHHHHHHHH-------C---------------BT-----------------EEEEEEEE-TTTSSCCC
T ss_pred ceEEEEecCCccHHHHHHHHH-------H---------------CCC----------------EEEEEEEECCCCCCHHH
Confidence 568889999999999888773 1 243 48888886 33556666
Q ss_pred HHHHHHHHHHhC-------CceEEEechHHHHHHHHHh
Q 009537 342 RMRAKKLADEIG-------SWHLDVSIDTVVSAFLSLF 372 (532)
Q Consensus 342 ~~~A~~LA~~iG-------~~h~~i~Id~~v~a~~~~f 372 (532)
++.++++++.+. ..++.+|+.+++..+....
T Consensus 46 ~~k~~~l~~~l~~~~~~~~~~l~~v~~~~~~~~i~~~~ 83 (197)
T PF02568_consen 46 REKVEELAEKLSEYSPGHKIRLYVVDFTEVQKEILRGV 83 (197)
T ss_dssp HHHHHHHHHHHHCCSTTS-EEEEEECHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhCCCcceeEEEECcHHHHHHHHhcC
Confidence 777777777763 5677888888777765443
No 116
>PRK13794 hypothetical protein; Provisional
Probab=96.74 E-value=0.011 Score=65.24 Aligned_cols=80 Identities=15% Similarity=0.139 Sum_probs=60.2
Q ss_pred HHhhHHHHHHHHHHHhCCCeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccC
Q 009537 245 IAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAK 324 (532)
Q Consensus 245 i~~~~a~~L~dylrrs~~~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~ 324 (532)
+.....-+|+..+.+.+ ..++|++|||.||++++.|+. ++ ++.
T Consensus 231 ~~~~a~~~i~~~~~~~~-~~v~vs~SGGKDS~v~L~L~~-------~~--------------~~~--------------- 273 (479)
T PRK13794 231 YERNSIGFIRNTAEKIN-KPVTVAYSGGKDSLATLLLAL-------KA--------------LGI--------------- 273 (479)
T ss_pred HHHHHHHHHHHHHHhcC-CCEEEEecchHHHHHHHHHHH-------HH--------------hCC---------------
Confidence 33444445555554433 579999999999999888874 33 221
Q ss_pred CeEEEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEech
Q 009537 325 RIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSID 362 (532)
Q Consensus 325 ~~~~t~~m~t~nSs~~t~~~A~~LA~~iG~~h~~i~Id 362 (532)
.+..+|+-|....++|.+.++++++.+|+.+..+..+
T Consensus 274 -~~~vvfiDTG~efpet~e~i~~~~~~~gl~i~~~~~~ 310 (479)
T PRK13794 274 -NFPVLFNDTGLEFPETLENVEDVEKHYGLEIIRTKSE 310 (479)
T ss_pred -CeEEEEEECCCCChHHHHHHHHHHHhcCCcEEEEchH
Confidence 2677888888778999999999999999999888765
No 117
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=96.37 E-value=0.016 Score=58.16 Aligned_cols=73 Identities=18% Similarity=0.059 Sum_probs=56.3
Q ss_pred HHHHHHHHhCCCeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEE
Q 009537 252 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVF 331 (532)
Q Consensus 252 ~L~dylrrs~~~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~ 331 (532)
.|..-+++-+ ..++|++|||-||++++.|+.. ... .+..+|
T Consensus 31 ~i~~a~~~~~-~~i~vs~SGGKDS~vlL~L~~~----------------------~~~----------------~i~vvf 71 (241)
T PRK02090 31 RLAWALENFG-GRLALVSSFGAEDAVLLHLVAQ----------------------VDP----------------DIPVIF 71 (241)
T ss_pred HHHHHHHHcC-CCEEEEecCCHHHHHHHHHHHh----------------------cCC----------------CCcEEE
Confidence 3444445434 4599999999999999888741 121 266788
Q ss_pred eCCCCCCHHHHHHHHHHHHHhCCceEEEechH
Q 009537 332 MGSENSSQETRMRAKKLADEIGSWHLDVSIDT 363 (532)
Q Consensus 332 m~t~nSs~~t~~~A~~LA~~iG~~h~~i~Id~ 363 (532)
+.|....++|.+-++++++.+|+.+..+..+.
T Consensus 72 iDTG~~~pet~e~~~~~~~~~gl~l~v~~~~~ 103 (241)
T PRK02090 72 LDTGYLFPETYRFIDELTERLLLNLKVYRPDA 103 (241)
T ss_pred ecCCCCCHHHHHHHHHHHHHhCCCEEEECCCc
Confidence 88888889999999999999999998887653
No 118
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=96.30 E-value=0.035 Score=57.76 Aligned_cols=67 Identities=18% Similarity=0.037 Sum_probs=51.5
Q ss_pred CeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeCCCCCCHHHH
Q 009537 263 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 342 (532)
Q Consensus 263 ~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~t~nSs~~t~ 342 (532)
..++|++|||.||++++.|+. ++. .... . .+..++..|....++|.
T Consensus 28 ~~~vv~~SGGKDS~VLL~La~-------ka~--------------~~~~---~----------~~~vl~iDTG~~FpEt~ 73 (301)
T PRK05253 28 ENPVMLYSIGKDSSVMLHLAR-------KAF--------------YPGK---L----------PFPLLHVDTGWKFPEMI 73 (301)
T ss_pred CCEEEEecCCHHHHHHHHHHH-------Hhh--------------cccC---C----------CeeEEEEeCCCCCHHHH
Confidence 689999999999999988884 441 1100 0 15566777766678999
Q ss_pred HHHHHHHHHhCCceEEEechH
Q 009537 343 MRAKKLADEIGSWHLDVSIDT 363 (532)
Q Consensus 343 ~~A~~LA~~iG~~h~~i~Id~ 363 (532)
+.+.++|+++|+.++.+..++
T Consensus 74 ef~d~~a~~~gl~l~v~~~~~ 94 (301)
T PRK05253 74 EFRDRRAKELGLELIVHSNPE 94 (301)
T ss_pred HHHHHHHHHhCCCEEEEeChH
Confidence 999999999999999887654
No 119
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=96.29 E-value=0.016 Score=53.86 Aligned_cols=65 Identities=22% Similarity=0.249 Sum_probs=46.4
Q ss_pred EEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeCCCCCCHHHHHH
Q 009537 265 FLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMR 344 (532)
Q Consensus 265 ~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~t~nSs~~t~~~ 344 (532)
++|++|||-||++++.|+. ++ +.. +..++..|....++|.+-
T Consensus 2 i~vs~SGGKDS~v~l~l~~-------~~---------------~~~----------------~~vv~~dtg~e~p~t~~~ 43 (174)
T PF01507_consen 2 IVVSFSGGKDSTVMLHLAR-------EA---------------GRK----------------VPVVFIDTGYEFPETYEF 43 (174)
T ss_dssp EEEE--SSHHHHHHHHHHH-------HH---------------HTT----------------CEEEEEE-STB-HHHHHH
T ss_pred eEEEecCCHHHHHHHHHHH-------Hh---------------cCC----------------CcEEEEecCccCHHHHHH
Confidence 6899999999999998884 33 211 245666777788999999
Q ss_pred HHHHHHHhCCceEEEechHHHHH
Q 009537 345 AKKLADEIGSWHLDVSIDTVVSA 367 (532)
Q Consensus 345 A~~LA~~iG~~h~~i~Id~~v~a 367 (532)
++.+++.+|+....+..+..+..
T Consensus 44 ~~~~~~~~~~~i~~~~~~~~~~~ 66 (174)
T PF01507_consen 44 VDELAKRYGIPIIVYRPPETFEQ 66 (174)
T ss_dssp HHHHHHHTTCEEEEEETTSHHHH
T ss_pred HHHHHhhhhhhhhhcccccchhh
Confidence 99999999999777766554433
No 120
>PRK08557 hypothetical protein; Provisional
Probab=96.26 E-value=0.037 Score=60.09 Aligned_cols=82 Identities=20% Similarity=0.136 Sum_probs=59.5
Q ss_pred HHHHhhHHHHHHHHHHHhCC--CeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchh
Q 009537 243 EEIAFGPGCWLWDYLRRSGA--SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESR 320 (532)
Q Consensus 243 eei~~~~a~~L~dylrrs~~--~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~ 320 (532)
+++.......|...+++.+. ..+++++|||.||++++.|+. ++ ..
T Consensus 160 ~~~e~~ai~~i~~~~~~~~~~~~~i~vsfSGGKDS~vlL~L~~-------~~---------------~~----------- 206 (417)
T PRK08557 160 EKLEENSLSILKDYIEKYKNKGYAINASFSGGKDSSVSTLLAK-------EV---------------IP----------- 206 (417)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcEEEEEcCCcHHHHHHHHHHH-------Hh---------------CC-----------
Confidence 34444445567676666654 357899999999999877763 21 21
Q ss_pred hccCCeEEEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEech
Q 009537 321 EFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSID 362 (532)
Q Consensus 321 e~~~~~~~t~~m~t~nSs~~t~~~A~~LA~~iG~~h~~i~Id 362 (532)
.+..+|..|....++|.+.++++++.+|+.+..+.-+
T Consensus 207 -----~i~vvfvDTG~efpET~e~ve~v~~~ygl~i~v~~~~ 243 (417)
T PRK08557 207 -----DLEVIFIDTGLEYPETINYVKDFAKKYDLNLDTLDGD 243 (417)
T ss_pred -----CCEEEEEECCCCCHHHHHHHHHHHHHhCCCEEEEech
Confidence 1456777776667999999999999999999888754
No 121
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=96.11 E-value=0.011 Score=51.04 Aligned_cols=19 Identities=47% Similarity=0.697 Sum_probs=16.5
Q ss_pred EEEecCCCcchHHHHHHHH
Q 009537 265 FLLPLSGGADSSSVAAIVG 283 (532)
Q Consensus 265 ~~l~LSGGiDSs~~A~lv~ 283 (532)
++|++|||+||++++.++.
T Consensus 1 v~v~~SGG~DS~~ll~~l~ 19 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLK 19 (103)
T ss_pred CEEEEeCcHHHHHHHHHHH
Confidence 4799999999999888774
No 122
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=95.98 E-value=0.028 Score=62.16 Aligned_cols=68 Identities=21% Similarity=0.255 Sum_probs=46.2
Q ss_pred CeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeCCCC-CCH-H
Q 009537 263 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSEN-SSQ-E 340 (532)
Q Consensus 263 ~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~t~n-Ss~-~ 340 (532)
+.+++.||||+||+++|.++.. .|. .++++++-... ++. .
T Consensus 178 gk~lvllSGGiDS~va~~~~~k----------------------rG~----------------~v~~l~f~~g~~~~~~~ 219 (482)
T PRK01269 178 EDVLSLISGGFDSGVASYMLMR----------------------RGS----------------RVHYCFFNLGGAAHEIG 219 (482)
T ss_pred CeEEEEEcCCchHHHHHHHHHH----------------------cCC----------------EEEEEEEecCCchhHHH
Confidence 5789999999999998887731 232 36777665332 223 3
Q ss_pred HHHHHHHHHHHhC----CceEEEechHHHHHH
Q 009537 341 TRMRAKKLADEIG----SWHLDVSIDTVVSAF 368 (532)
Q Consensus 341 t~~~A~~LA~~iG----~~h~~i~Id~~v~a~ 368 (532)
.++.|+.+|+.++ +.++++++.+.+.++
T Consensus 220 ~~~~a~~l~~~~~~~~~~~l~~v~~~~~~~~i 251 (482)
T PRK01269 220 VKQVAHYLWNRYGSSHRVRFISVDFEPVVGEI 251 (482)
T ss_pred HHHHHHHHHHHhCccCCceEEEEecHHHHHHH
Confidence 6788888888776 446777776665543
No 123
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=95.85 E-value=0.022 Score=62.13 Aligned_cols=67 Identities=12% Similarity=0.144 Sum_probs=45.4
Q ss_pred CeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeCCC--CCCHH
Q 009537 263 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSE--NSSQE 340 (532)
Q Consensus 263 ~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~t~--nSs~~ 340 (532)
+.++|++|||+||.+.+.++... - .. ..+ . .+++++.-.. ..|.+
T Consensus 16 ~~ilvavSGG~DS~~Ll~~l~~~---~-~~-------------~~~-~---------------~l~a~hvnhglr~~s~~ 62 (436)
T PRK10660 16 RQILVAFSGGLDSTVLLHLLVQW---R-TE-------------NPG-V---------------TLRAIHVHHGLSPNADS 62 (436)
T ss_pred CeEEEEecCCHHHHHHHHHHHHH---H-Hh-------------cCC-C---------------eEEEEEEeCCCCcchHH
Confidence 67999999999999877776420 0 00 011 1 2566665532 34556
Q ss_pred HHHHHHHHHHHhCCceEEEech
Q 009537 341 TRMRAKKLADEIGSWHLDVSID 362 (532)
Q Consensus 341 t~~~A~~LA~~iG~~h~~i~Id 362 (532)
..+.++.+|+++|++|+.++++
T Consensus 63 ~~~~~~~~~~~l~i~~~~~~~~ 84 (436)
T PRK10660 63 WVKHCEQVCQQWQVPLVVERVQ 84 (436)
T ss_pred HHHHHHHHHHHcCCcEEEEEEe
Confidence 6678899999999999887765
No 124
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=95.83 E-value=0.023 Score=53.57 Aligned_cols=59 Identities=31% Similarity=0.335 Sum_probs=46.4
Q ss_pred EEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeCCCCCCHHHHHH
Q 009537 265 FLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMR 344 (532)
Q Consensus 265 ~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~t~nSs~~t~~~ 344 (532)
+-+-+|||-|||+.|.|+. ++|++. .+.||..+--.| -.-
T Consensus 3 v~vLfSGGKDSSLaA~iL~----------------------klgyev--------------~LVTvnFGv~d~----~k~ 42 (198)
T COG2117 3 VYVLFSGGKDSSLAALILD----------------------KLGYEV--------------ELVTVNFGVLDS----WKY 42 (198)
T ss_pred eEEEecCCCchhHHHHHHH----------------------HhCCCc--------------EEEEEEeccccc----hhh
Confidence 4577999999999887763 266553 488999987655 467
Q ss_pred HHHHHHHhCCceEEEechH
Q 009537 345 AKKLADEIGSWHLDVSIDT 363 (532)
Q Consensus 345 A~~LA~~iG~~h~~i~Id~ 363 (532)
|++-|+.+|.+|..+.++.
T Consensus 43 A~~tA~~lgF~h~vl~Ldr 61 (198)
T COG2117 43 ARETAAILGFPHEVLQLDR 61 (198)
T ss_pred HHHHHHHhCCCcceeccCH
Confidence 8888899999999999874
No 125
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=95.58 E-value=0.031 Score=60.00 Aligned_cols=63 Identities=22% Similarity=0.266 Sum_probs=43.9
Q ss_pred EEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeCCCCCCHHHHHHH
Q 009537 266 LLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETRMRA 345 (532)
Q Consensus 266 ~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~t~nSs~~t~~~A 345 (532)
||+.|||.|||++...+. + .+.. .|+|++...-+ +.++.+.+
T Consensus 1 VLAySGGLDTS~~l~~L~-------e---------------~~~~---------------~Via~~aDlGq-~~~d~~~i 42 (388)
T PF00764_consen 1 VLAYSGGLDTSVILKWLK-------E---------------EGGY---------------EVIAVTADLGQ-PDEDLEAI 42 (388)
T ss_dssp EEE--SSHHHHHHHHHHH-------H---------------TTTE---------------EEEEEEEESSS-T-S-HHHH
T ss_pred CeeeCCChHHHHHHHHHH-------h---------------hcCc---------------eEEEEEEECCC-cHHHHHHH
Confidence 689999999999766552 2 2322 48888877655 45789999
Q ss_pred HHHHHHhCC-ceEEEechHHHH
Q 009537 346 KKLADEIGS-WHLDVSIDTVVS 366 (532)
Q Consensus 346 ~~LA~~iG~-~h~~i~Id~~v~ 366 (532)
++-|..+|+ .|+.+|..+.+-
T Consensus 43 ~~kA~~~Ga~~~~vvD~r~ef~ 64 (388)
T PF00764_consen 43 EEKALKLGASKHIVVDARDEFA 64 (388)
T ss_dssp HHHHHHHT-SEEEEEE-HHHHH
T ss_pred HHHHHhcCCceeeecchHHHHH
Confidence 999999998 999999976654
No 126
>PRK05370 argininosuccinate synthase; Validated
Probab=95.38 E-value=0.051 Score=58.99 Aligned_cols=73 Identities=14% Similarity=0.107 Sum_probs=52.7
Q ss_pred CCCeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeCCCCCCHH
Q 009537 261 GASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQE 340 (532)
Q Consensus 261 ~~~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~t~nSs~~ 340 (532)
+.++++|+.|||.|||+++..+. . -+. .|+|++...-+...+
T Consensus 10 ~~~KVvLAYSGGLDTSv~l~wL~--------e--------------~~~----------------eVia~~aDvGQ~~~e 51 (447)
T PRK05370 10 VGQRVGIAFSGGLDTSAALLWMR--------Q--------------KGA----------------VPYAYTANLGQPDED 51 (447)
T ss_pred CCCEEEEEecCCchHHHHHHHHH--------h--------------cCC----------------eEEEEEEECCCCCcc
Confidence 45789999999999999766542 1 122 377776665443356
Q ss_pred HHHHHHHHHHHhCC-ceEEEechHHHH-HHHHH
Q 009537 341 TRMRAKKLADEIGS-WHLDVSIDTVVS-AFLSL 371 (532)
Q Consensus 341 t~~~A~~LA~~iG~-~h~~i~Id~~v~-a~~~~ 371 (532)
+.+.+++=|..+|+ .|+.+|..+.+- .++..
T Consensus 52 d~~~i~~kA~~~GA~~~~viDlr~eF~e~~i~a 84 (447)
T PRK05370 52 DYDAIPRRAMEYGAENARLIDCRAQLVAEGIAA 84 (447)
T ss_pred chHHHHHHHHHhCCCEEEEeccHHHHHHHHHHH
Confidence 78999999999999 699999976543 44433
No 127
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=95.32 E-value=0.071 Score=56.70 Aligned_cols=67 Identities=18% Similarity=0.163 Sum_probs=52.2
Q ss_pred CCeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeCCCCCCHHH
Q 009537 262 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQET 341 (532)
Q Consensus 262 ~~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~t~nSs~~t 341 (532)
.++++|+.|||.|+|++.-.+. +. ++. .|+|++...-+. .++
T Consensus 4 ~kkvvLAYSGGLDTSv~i~wL~-------e~---------------~~~---------------eVia~tadvGQ~-eed 45 (403)
T COG0137 4 VKKVVLAYSGGLDTSVAIKWLK-------EK---------------GGA---------------EVIAVTADVGQP-EED 45 (403)
T ss_pred CcEEEEEecCCccHHHHHHHHH-------Hh---------------cCc---------------eEEEEEEeCCCC-hHH
Confidence 4789999999999999765552 22 222 488887776554 799
Q ss_pred HHHHHHHHHHhCCc-eEEEechHHHH
Q 009537 342 RMRAKKLADEIGSW-HLDVSIDTVVS 366 (532)
Q Consensus 342 ~~~A~~LA~~iG~~-h~~i~Id~~v~ 366 (532)
.+.+++=|..+|+. |+.+|..+-|-
T Consensus 46 ~~~i~eKA~~~Ga~~~~viD~reeF~ 71 (403)
T COG0137 46 LDAIREKALELGAEEAYVIDAREEFV 71 (403)
T ss_pred hHHHHHHHHHhCCceEEEeecHHHHH
Confidence 99999999999987 99999976554
No 128
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=95.15 E-value=0.12 Score=55.75 Aligned_cols=75 Identities=19% Similarity=0.253 Sum_probs=47.3
Q ss_pred HHHHHHHHHhCCCeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEE
Q 009537 251 CWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTV 330 (532)
Q Consensus 251 ~~L~dylrrs~~~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~ 330 (532)
.|++.++ |..++++.+|||+||+++|+|+. +| ++.++ ++++
T Consensus 222 ~~i~k~v---G~~~Vl~~vSGgvdStV~a~Ll~-------~a--------------lg~~R---------------~~ai 262 (552)
T KOG1622|consen 222 NEIRKWV---GDYKVLVAVSGGVDSTVCAALLR-------RA--------------LGPDR---------------VHAI 262 (552)
T ss_pred HHHHHHh---cccceEEEecCCchHHHHHHHHH-------Hh--------------hCCCc---------------eEEE
Confidence 3555544 46799999999999999999984 66 55453 6776
Q ss_pred EeCCCCCCHHHHHHH-HHHHHHhCCceEEEechHHH
Q 009537 331 FMGSENSSQETRMRA-KKLADEIGSWHLDVSIDTVV 365 (532)
Q Consensus 331 ~m~t~nSs~~t~~~A-~~LA~~iG~~h~~i~Id~~v 365 (532)
....-.-....-+.- +.|.. ||+....+|-..-+
T Consensus 263 ~vdNG~mrk~Ea~~V~~tl~~-lgi~i~v~~as~~f 297 (552)
T KOG1622|consen 263 HVDNGFMRKKEAEQVEKTLVY-LGIPITVVDASETF 297 (552)
T ss_pred EecccchhhhHHHHHHHHHHH-cCCceEEeechHHH
Confidence 554222222222222 23444 88888888765443
No 129
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=94.83 E-value=0.085 Score=52.58 Aligned_cols=28 Identities=7% Similarity=0.000 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHhCCceEEEechHHHH
Q 009537 339 QETRMRAKKLADEIGSWHLDVSIDTVVS 366 (532)
Q Consensus 339 ~~t~~~A~~LA~~iG~~h~~i~Id~~v~ 366 (532)
....+.++..|+.||++++.+.+....+
T Consensus 44 ~~~~~~~~~qA~algiPl~~~~~~~~~e 71 (222)
T TIGR00289 44 SPNLHLTDLVAEAVGIPLIKLYTSGEEE 71 (222)
T ss_pred cCCHHHHHHHHHHcCCCeEEEEcCCchh
Confidence 4566889999999999998887754333
No 130
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]
Probab=94.80 E-value=0.12 Score=55.37 Aligned_cols=71 Identities=30% Similarity=0.325 Sum_probs=52.7
Q ss_pred CeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeC-CCCCCHHH
Q 009537 263 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMG-SENSSQET 341 (532)
Q Consensus 263 ~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~-t~nSs~~t 341 (532)
...++-||||+||-+.+.++. + -|- .++.||+. ..+.+++.
T Consensus 176 Gk~l~LlSGGIDSPVA~~l~m-------k---------------RG~----------------~v~~v~f~~~p~~~~~a 217 (383)
T COG0301 176 GKVLLLLSGGIDSPVAAWLMM-------K---------------RGV----------------EVIPVHFGNPPYTSEKA 217 (383)
T ss_pred CcEEEEEeCCCChHHHHHHHH-------h---------------cCC----------------EEEEEEEcCCCCchHHH
Confidence 568889999999999888873 1 232 37888884 45788999
Q ss_pred HHHHHHHH-HHhCCce-----EEEechHHHHHHHHH
Q 009537 342 RMRAKKLA-DEIGSWH-----LDVSIDTVVSAFLSL 371 (532)
Q Consensus 342 ~~~A~~LA-~~iG~~h-----~~i~Id~~v~a~~~~ 371 (532)
+..+..|+ ..+..++ +.+|..++++.+...
T Consensus 218 ~~k~~~l~~~~~~~~~~~~~~~~v~f~~v~~~i~~~ 253 (383)
T COG0301 218 REKVVALALLRLTSYGGKVRLYVVPFTEVQEEILEK 253 (383)
T ss_pred HHHHHHHHhhhhcccCCceEEEEEchHHHHHHHHhh
Confidence 99999999 7776554 666776766666444
No 131
>COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=94.70 E-value=0.034 Score=54.71 Aligned_cols=56 Identities=27% Similarity=0.254 Sum_probs=38.8
Q ss_pred CeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeCCCCCCHHHH
Q 009537 263 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 342 (532)
Q Consensus 263 ~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~t~nSs~~t~ 342 (532)
-.++|++|||+|||++|.|+. . ++-. ..| .|..|| ..-+
T Consensus 61 ~kiaVA~SGG~DSsas~iilR-------~---------------~g~~---v~p-----------~t~~Lp-----~~ir 99 (255)
T COG1365 61 PKIAVAYSGGVDSSASAIILR-------W---------------AGFT---VDP-----------GTAILP-----DHIR 99 (255)
T ss_pred ceEEEEecCCcchHHHHHHHH-------h---------------hcee---ecc-----------ccccCC-----HHHh
Confidence 368999999999999998874 2 2211 011 233444 5677
Q ss_pred HHHHHHHHHhCCceEEE
Q 009537 343 MRAKKLADEIGSWHLDV 359 (532)
Q Consensus 343 ~~A~~LA~~iG~~h~~i 359 (532)
..++.++..+|..+.-+
T Consensus 100 ~n~~~l~~~lg~~p~yv 116 (255)
T COG1365 100 RNKEELETLLGEVPEYV 116 (255)
T ss_pred HHHHHHHHHHccCHHHH
Confidence 88999999999876443
No 132
>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin). This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS.
Probab=94.10 E-value=0.35 Score=47.35 Aligned_cols=61 Identities=15% Similarity=0.072 Sum_probs=47.8
Q ss_pred CeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeCCCCCCHHHH
Q 009537 263 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 342 (532)
Q Consensus 263 ~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~t~nSs~~t~ 342 (532)
..++|+.|||.||++++-|+. + +.. .+..+|+.|...-++|.
T Consensus 14 ~~~~~s~SgGKDS~Vll~L~~-------~---------------~~~----------------~~~v~f~DTg~efpeT~ 55 (212)
T TIGR00434 14 GHLVYSTSFGIQGAVLLDLVS-------K---------------ISP----------------DIPVIFLDTGYHFPETY 55 (212)
T ss_pred CCEEEEecCCHHHHHHHHHHH-------h---------------cCC----------------CCcEEEecCCCCCHHHH
Confidence 479999999999999888774 2 121 14567999998999999
Q ss_pred HHHHHHHHHhCCceEEEec
Q 009537 343 MRAKKLADEIGSWHLDVSI 361 (532)
Q Consensus 343 ~~A~~LA~~iG~~h~~i~I 361 (532)
+-.+++++.+|.....+.-
T Consensus 56 efv~~~~~~~~l~i~~~~~ 74 (212)
T TIGR00434 56 ELIDELTERYPLNIKVYKP 74 (212)
T ss_pred HHHHHHHHHhCCceEEECC
Confidence 9999999999976555433
No 133
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.
Probab=93.44 E-value=0.52 Score=47.01 Aligned_cols=56 Identities=9% Similarity=0.092 Sum_probs=44.6
Q ss_pred CCeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeCCCCCCHHH
Q 009537 262 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQET 341 (532)
Q Consensus 262 ~~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~t~nSs~~t 341 (532)
...++++.|||.||++++-|+. ++ ... .+-.+|..|...-++|
T Consensus 25 ~~~~~~s~S~Gkds~VlL~l~~-------~~---------------~~~---------------~i~vv~vDTg~~fpET 67 (226)
T TIGR02057 25 PHGLVQTSAFGIQALVTLHLLS-------SI---------------SEP---------------MIPVIFIDTLYHFPQT 67 (226)
T ss_pred CCCEEEEecCCHHHHHHHHHHH-------Hh---------------hCC---------------CCCEEEEeCCCCCHHH
Confidence 4569999999999999888874 32 101 1456788888888999
Q ss_pred HHHHHHHHHHhCC
Q 009537 342 RMRAKKLADEIGS 354 (532)
Q Consensus 342 ~~~A~~LA~~iG~ 354 (532)
.+-++++++.+|.
T Consensus 68 ~e~~d~~~~~~~~ 80 (226)
T TIGR02057 68 LTLKDELTKKYYQ 80 (226)
T ss_pred HHHHHHHHHHhCC
Confidence 9999999999994
No 134
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=93.19 E-value=0.37 Score=50.07 Aligned_cols=67 Identities=16% Similarity=0.095 Sum_probs=50.8
Q ss_pred CeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeCCCCCCHHHH
Q 009537 263 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 342 (532)
Q Consensus 263 ~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~t~nSs~~t~ 342 (532)
...+++.|||-||++++.|+. ++... +.. .+..++..|...-++|.
T Consensus 20 ~~~vv~~SGGKDS~VlLhLa~-------kaf~~------------~~~---------------p~~vl~IDTG~~F~Et~ 65 (294)
T TIGR02039 20 ERPVMLYSIGKDSSVLLHLAR-------KAFYP------------GPL---------------PFPLLHVDTGWKFREMI 65 (294)
T ss_pred CCcEEEEecChHHHHHHHHHH-------HHhcc------------cCC---------------CeEEEEEecCCCCHHHH
Confidence 345788999999999988874 44210 111 26678888877778899
Q ss_pred HHHHHHHHHhCCceEEEechH
Q 009537 343 MRAKKLADEIGSWHLDVSIDT 363 (532)
Q Consensus 343 ~~A~~LA~~iG~~h~~i~Id~ 363 (532)
+...++|+.+|..+.+...++
T Consensus 66 efrd~~a~~~gl~l~v~~~~~ 86 (294)
T TIGR02039 66 AFRDHMVAKYGLRLIVHSNEE 86 (294)
T ss_pred HHHHHHHHHhCCCEEEEechh
Confidence 999999999999998886654
No 135
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=92.89 E-value=0.36 Score=39.89 Aligned_cols=19 Identities=42% Similarity=0.615 Sum_probs=16.4
Q ss_pred EEEecCCCcchHHHHHHHH
Q 009537 265 FLLPLSGGADSSSVAAIVG 283 (532)
Q Consensus 265 ~~l~LSGGiDSs~~A~lv~ 283 (532)
+++++|||.||++++.++.
T Consensus 1 ilv~~sgg~dS~~~l~~~~ 19 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAK 19 (86)
T ss_pred CEEEeeCCHHHHHHHHHHH
Confidence 5899999999999887763
No 136
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=92.72 E-value=1.1 Score=47.07 Aligned_cols=67 Identities=18% Similarity=0.031 Sum_probs=51.2
Q ss_pred CCeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeCCCCCCHHH
Q 009537 262 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQET 341 (532)
Q Consensus 262 ~~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~t~nSs~~t 341 (532)
....+++.|||.||++++.|+. +++.. +.. .+-.++..|...-++|
T Consensus 37 f~~~~v~~SgGKDS~VlLhLa~-------kaf~~------------~~~---------------~~pvl~VDTG~~FpEt 82 (312)
T PRK12563 37 CSKPVMLYSIGKDSVVMLHLAM-------KAFRP------------TRP---------------PFPLLHVDTTWKFREM 82 (312)
T ss_pred cCCcEEEecCChHHHHHHHHHH-------Hhhcc------------cCC---------------CeeEEEeCCCCCCHHH
Confidence 3567899999999999988874 44110 111 2667888888888999
Q ss_pred HHHHHHHHHHhCCceEEEech
Q 009537 342 RMRAKKLADEIGSWHLDVSID 362 (532)
Q Consensus 342 ~~~A~~LA~~iG~~h~~i~Id 362 (532)
.+-..++|+.+|+.+++..-.
T Consensus 83 ~efrD~~a~~~gl~Liv~~~~ 103 (312)
T PRK12563 83 IDFRDRRAKELGLDLVVHHNP 103 (312)
T ss_pred HHHHHHHHHHhCCcEEEecCh
Confidence 999999999999988776443
No 137
>KOG1706 consensus Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=90.79 E-value=0.75 Score=47.75 Aligned_cols=58 Identities=26% Similarity=0.323 Sum_probs=43.4
Q ss_pred hCCCeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeCCCCCCH
Q 009537 260 SGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQ 339 (532)
Q Consensus 260 s~~~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~t~nSs~ 339 (532)
++.+.++|+.|||.|+|+..+-+. + .|++ ..+||....- +
T Consensus 3 ~~~~~vVLAySGgLDTscil~WLk--------e--------------qGye-----------------Viay~AnvGQ-~ 42 (412)
T KOG1706|consen 3 SSKKSVVLAYSGGLDTSCILAWLK--------E--------------QGYE-----------------VIAYLANVGQ-K 42 (412)
T ss_pred CCCceEEEEecCCcCchhhhHHHH--------h--------------cCce-----------------EEEeeccccc-h
Confidence 345778999999999988655442 2 4553 3578886543 8
Q ss_pred HHHHHHHHHHHHhCCceE
Q 009537 340 ETRMRAKKLADEIGSWHL 357 (532)
Q Consensus 340 ~t~~~A~~LA~~iG~~h~ 357 (532)
++.+.|++=|..+|+.-.
T Consensus 43 edfe~ar~kAlk~Gakk~ 60 (412)
T KOG1706|consen 43 EDFEEARKKALKSGAKKV 60 (412)
T ss_pred hhHHHHHHhhhhcCceEE
Confidence 999999999999999643
No 138
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=89.61 E-value=1 Score=45.87 Aligned_cols=67 Identities=24% Similarity=0.235 Sum_probs=51.5
Q ss_pred CeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeCCCCCCHHHH
Q 009537 263 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 342 (532)
Q Consensus 263 ~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~t~nSs~~t~ 342 (532)
..++++.|||.||++++.|+. ++ .. .+..++..|..--++|.
T Consensus 40 ~~~~~~~S~Gkds~V~l~L~~-------k~---------------~~----------------~~~vif~DTg~~f~Et~ 81 (261)
T COG0175 40 NPVVVSFSGGKDSTVLLHLAA-------KA---------------FP----------------DFPVIFLDTGYHFPETY 81 (261)
T ss_pred CCeEEEecCchhHHHHHHHHH-------Hh---------------cC----------------CCcEEEEeCCCcCHHHH
Confidence 447999999999999988885 43 11 14567778888889999
Q ss_pred HHHHHHHHHhCCceEEEechHHHHH
Q 009537 343 MRAKKLADEIGSWHLDVSIDTVVSA 367 (532)
Q Consensus 343 ~~A~~LA~~iG~~h~~i~Id~~v~a 367 (532)
+-+.++++..|....+..-+..+..
T Consensus 82 ~~~d~~~~~~~~~l~~~~~~~~~~~ 106 (261)
T COG0175 82 EFRDRLAEEYGLDLKVYRPDDEVAE 106 (261)
T ss_pred HHHHHHHHHcCCeEEEecCccchhh
Confidence 9999999999977666655544433
No 139
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=86.52 E-value=1.7 Score=47.83 Aligned_cols=68 Identities=13% Similarity=0.103 Sum_probs=42.5
Q ss_pred CCeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeCCCCCCHHH
Q 009537 262 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQET 341 (532)
Q Consensus 262 ~~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~t~nSs~~t 341 (532)
...++|++|||=||++++.|+. +|+.. +..+ .-.+.++-++..|.--.++|
T Consensus 13 ~~p~vV~fSGGKDSta~L~Lv~-------~Al~~-----------lp~e-----------~~~k~v~VI~~DTgvE~Pe~ 63 (447)
T TIGR03183 13 DIPWVVGYSGGKDSTAVLQLIW-------NALAA-----------LPAE-----------QRTKKIHVISTDTLVENPIV 63 (447)
T ss_pred CCceEEEeCCCHHHHHHHHHHH-------HHHHh-----------cccc-----------ccCcceEEEECcCCCccHHH
Confidence 3568999999999999999985 55321 1111 01124777777776555554
Q ss_pred HHH-------HHHHHHHhCCceEE
Q 009537 342 RMR-------AKKLADEIGSWHLD 358 (532)
Q Consensus 342 ~~~-------A~~LA~~iG~~h~~ 358 (532)
.+- .+..|++.|.+...
T Consensus 64 ~~~v~~~l~~i~~~a~~~~lpi~~ 87 (447)
T TIGR03183 64 AAWVNASLERMQEAAQDQGLPIEP 87 (447)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEE
Confidence 444 45566776765443
No 140
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=84.48 E-value=2.9 Score=41.76 Aligned_cols=22 Identities=14% Similarity=0.098 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhCCceEEEech
Q 009537 341 TRMRAKKLADEIGSWHLDVSID 362 (532)
Q Consensus 341 t~~~A~~LA~~iG~~h~~i~Id 362 (532)
..+-.+..|+.||++++.+..+
T Consensus 46 ~~~~~~~qA~algipl~~~~~~ 67 (223)
T TIGR00290 46 NAHLTDLQAESIGIPLIKLYTE 67 (223)
T ss_pred CHHHHHHHHHHcCCCeEEeecC
Confidence 4577888999999998776654
No 141
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=83.58 E-value=4.9 Score=40.11 Aligned_cols=66 Identities=18% Similarity=0.144 Sum_probs=43.3
Q ss_pred eEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeCCCCC-----C
Q 009537 264 GFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENS-----S 338 (532)
Q Consensus 264 g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~t~nS-----s 338 (532)
.++.-+|||-||..++.++. + .|-+ .+.-+.|.+.+. .
T Consensus 2 k~~aL~SGGKDS~~Al~~a~-------~---------------~G~e---------------V~~Ll~~~p~~~dS~m~H 44 (223)
T COG2102 2 KVIALYSGGKDSFYALYLAL-------E---------------EGHE---------------VVYLLTVKPENGDSYMFH 44 (223)
T ss_pred cEEEEEecCcHHHHHHHHHH-------H---------------cCCe---------------eEEEEEEecCCCCeeeee
Confidence 35677899999988766552 1 2322 233334443333 2
Q ss_pred HHHHHHHHHHHHHhCCceEEEechHHHH
Q 009537 339 QETRMRAKKLADEIGSWHLDVSIDTVVS 366 (532)
Q Consensus 339 ~~t~~~A~~LA~~iG~~h~~i~Id~~v~ 366 (532)
..-.+.++.+|+.+|+++....++..-+
T Consensus 45 ~~n~~~~~~~Ae~~gi~l~~~~~~g~~e 72 (223)
T COG2102 45 TPNLELAELQAEAMGIPLVTFDTSGEEE 72 (223)
T ss_pred ccchHHHHHHHHhcCCceEEEecCccch
Confidence 2456789999999999999998887333
No 142
>PRK06850 hypothetical protein; Provisional
Probab=83.53 E-value=2.7 Score=46.94 Aligned_cols=68 Identities=16% Similarity=0.152 Sum_probs=42.3
Q ss_pred CCeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeCCCCCCHHH
Q 009537 262 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQET 341 (532)
Q Consensus 262 ~~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~t~nSs~~t 341 (532)
...++|++|||-||++++.|+. +|+.. +..+. -.+.++-++..|---.+++
T Consensus 34 ~~P~vV~fSGGKDStavL~Lv~-------~Al~~-----------lp~e~-----------r~k~v~Vi~~DTgvE~Pe~ 84 (507)
T PRK06850 34 NRPWVIGYSGGKDSTAVLQLVW-------NALAG-----------LPPEK-----------RTKPVYVISSDTLVENPVV 84 (507)
T ss_pred CCCeEEeCCCCchHHHHHHHHH-------HHHHh-----------cchhc-----------cCCcEEEEECCCCCccHHH
Confidence 4678999999999999999885 55321 11100 0124777777776545555
Q ss_pred HHHH-------HHHHHHhCCceEE
Q 009537 342 RMRA-------KKLADEIGSWHLD 358 (532)
Q Consensus 342 ~~~A-------~~LA~~iG~~h~~ 358 (532)
..-+ +..|+..|.+...
T Consensus 85 ~~~v~~~l~~i~~~a~~~glpi~~ 108 (507)
T PRK06850 85 VDWVNKSLERINEAAKKQGLPITP 108 (507)
T ss_pred HHHHHHHHHHHHHHHHHcCCceEE
Confidence 5444 4446667776543
No 143
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=77.55 E-value=2.7 Score=41.88 Aligned_cols=22 Identities=9% Similarity=0.084 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhCCceEEEechH
Q 009537 342 RMRAKKLADEIGSWHLDVSIDT 363 (532)
Q Consensus 342 ~~~A~~LA~~iG~~h~~i~Id~ 363 (532)
.+-.+..|+.||+++..+.+..
T Consensus 47 ~~~~~~qA~algipl~~~~~~g 68 (218)
T PF01902_consen 47 IELIEAQAEALGIPLIEIPTSG 68 (218)
T ss_dssp GTCHHHHHHHHT--EEEEEE--
T ss_pred HHHHHHHHHHCCCCEEEEEccC
Confidence 5677888999999999888863
No 144
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=76.88 E-value=1.7 Score=47.28 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=19.7
Q ss_pred CCeEEEecCCCcchHHHHHHHH
Q 009537 262 ASGFLLPLSGGADSSSVAAIVG 283 (532)
Q Consensus 262 ~~g~~l~LSGGiDSs~~A~lv~ 283 (532)
-+.+.|-+|||+||+++|++++
T Consensus 250 ~s~VcVlfSGGvDs~vvA~l~h 271 (520)
T KOG0573|consen 250 ESNVCVLFSGGVDSTVVAVLAH 271 (520)
T ss_pred cCcEEEEecCCchHHHHHHHHH
Confidence 3678999999999999999986
No 145
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=65.99 E-value=16 Score=38.89 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.2
Q ss_pred CCCeEEEecCCCcchHHHHHHHH
Q 009537 261 GASGFLLPLSGGADSSSVAAIVG 283 (532)
Q Consensus 261 ~~~g~~l~LSGGiDSs~~A~lv~ 283 (532)
....+.|++|||-||+++.-|+.
T Consensus 26 ~f~~VcVSFSGGKDS~lmLhL~~ 48 (407)
T COG3969 26 TFPRVCVSFSGGKDSGLMLHLVA 48 (407)
T ss_pred cCCeEEEEecCCCchhHHHHHHH
Confidence 45789999999999999888885
No 146
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=53.36 E-value=91 Score=34.70 Aligned_cols=33 Identities=15% Similarity=0.065 Sum_probs=22.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHhCCceEEEec
Q 009537 329 TVFMGSENSSQETRMRAKKLADEIGSWHLDVSI 361 (532)
Q Consensus 329 t~~m~t~nSs~~t~~~A~~LA~~iG~~h~~i~I 361 (532)
.+.++..+-+.++..+--+.+.+++..|..+.+
T Consensus 342 ~~I~G~P~et~e~~~~t~~~~~~l~~~~~~~~~ 374 (497)
T TIGR02026 342 QFITGFENETDETFEETYRQLLDWDPDQANWLM 374 (497)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHcCCCceEEEE
Confidence 445555566777777777788888877766543
No 147
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=53.29 E-value=59 Score=36.11 Aligned_cols=33 Identities=12% Similarity=0.028 Sum_probs=27.8
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHhCCceEEE
Q 009537 327 FYTVFMGSENSSQETRMRAKKLADEIGSWHLDV 359 (532)
Q Consensus 327 ~~t~~m~t~nSs~~t~~~A~~LA~~iG~~h~~i 359 (532)
+--+|..|..--++|.+-+.++++.+|.....+
T Consensus 141 ipV~flDTG~lFpETy~~~d~v~~~ygl~l~~~ 173 (463)
T TIGR00424 141 FRVFSLDTGRLNPETYRFFDAVEKQYGIRIEYM 173 (463)
T ss_pred CcEEEecCCCCCHHHHHHHHHHHHHhCCceEEE
Confidence 345778888889999999999999999877655
No 148
>TIGR02055 APS_reductase thioredoxin-dependent adenylylsulfate APS reductase. This model describes recently identified adenosine 5'-phosphosulfate (APS) reductase activity found in sulfate-assimilatory prokaryotes, thus separating it from the traditionally described phosphoadenosine 5'-phosphosulfate (PAPS) reductases found in bacteria and fungi. Homologous to PAPS reductase in enterobacteria, cyanobacteria, and yeast, APS reductase here clusters with, and demonstrates greater homology to plant APS reductase. Additionally, the presence of two conserved C-terminal motifs (CCXXRKXXPL & SXGCXXCT) distinguishes APS substrate specificity and serves as a FeS cluster.
Probab=53.21 E-value=33 Score=33.11 Aligned_cols=35 Identities=11% Similarity=0.025 Sum_probs=29.8
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEec
Q 009537 327 FYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSI 361 (532)
Q Consensus 327 ~~t~~m~t~nSs~~t~~~A~~LA~~iG~~h~~i~I 361 (532)
+..+|+.|...-++|.+-+.++++.+|.....+.-
T Consensus 19 ~~vifvDTg~~FpET~~~~d~~~~~~~l~i~~~~~ 53 (191)
T TIGR02055 19 VKVFFLDTGRLFKETYETIDQVRERYDILIDVLSP 53 (191)
T ss_pred CcEEEecCCCCCHHHHHHHHHHHHHhCCceEEEcC
Confidence 55788899988999999999999999987766643
No 149
>PLN02309 5'-adenylylsulfate reductase
Probab=53.01 E-value=64 Score=35.79 Aligned_cols=32 Identities=9% Similarity=-0.047 Sum_probs=27.4
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHhCCceEEE
Q 009537 328 YTVFMGSENSSQETRMRAKKLADEIGSWHLDV 359 (532)
Q Consensus 328 ~t~~m~t~nSs~~t~~~A~~LA~~iG~~h~~i 359 (532)
--+++.|..--+||.+-+.+|++.+|...+.+
T Consensus 137 pV~flDTG~lfpETy~~~d~v~~~ygl~i~~~ 168 (457)
T PLN02309 137 RVFSLDTGRLNPETYRLFDAVEKHYGIRIEYM 168 (457)
T ss_pred cEEEecCCCCCHHHHHHHHHHHHHhCCceEEE
Confidence 35678888889999999999999999876655
No 150
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=42.43 E-value=1.3e+02 Score=35.76 Aligned_cols=77 Identities=16% Similarity=0.235 Sum_probs=56.1
Q ss_pred CeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeCCCCC-----
Q 009537 263 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENS----- 337 (532)
Q Consensus 263 ~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~t~nS----- 337 (532)
..++|.+||+..|.- ++..-+|++-+ +.. .++.+|..+.++
T Consensus 249 e~ilvcI~~~~~~e~---liR~a~RlA~~---------------~~a----------------~~~av~v~~~~~~~~~~ 294 (890)
T COG2205 249 ERILVCISGSPGSEK---LIRRAARLASR---------------LHA----------------KWTAVYVETPELHRLSE 294 (890)
T ss_pred ceEEEEECCCCchHH---HHHHHHHHHHH---------------hCC----------------CeEEEEEeccccccccH
Confidence 579999999999854 55544444332 222 388998887663
Q ss_pred -CHHHHHHHHHHHHHhCCceEEEechHHHHHHHHHhh
Q 009537 338 -SQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQ 373 (532)
Q Consensus 338 -s~~t~~~A~~LA~~iG~~h~~i~Id~~v~a~~~~f~ 373 (532)
.+.....+.+||+++|+....+.=+++.+++...-.
T Consensus 295 ~~~~~l~~~~~Lae~lGae~~~l~~~dv~~~i~~ya~ 331 (890)
T COG2205 295 KEARRLHENLRLAEELGAEIVTLYGGDVAKAIARYAR 331 (890)
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEeCCcHHHHHHHHHH
Confidence 234556788999999999999988888888877644
No 151
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=41.41 E-value=90 Score=31.48 Aligned_cols=70 Identities=9% Similarity=0.101 Sum_probs=38.5
Q ss_pred HHHhCCCeEEEEccC--CCccCCc-------------HHHHHHHHHHHHHHhCCeEEEEcCCcCCCCceeeeccEEEEeC
Q 009537 100 DLALNGVEVFMNASG--SHHQLRK-------------LDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVVVN 164 (532)
Q Consensus 100 ~lal~GaeIIlnpSa--S~~~~~k-------------~~~r~~li~~~a~~~g~~yvyaN~~G~dg~~l~fdG~S~I~~n 164 (532)
..+.+|||||+-|=. .++.... .......+++.|++++++++. ...-.+.++-+|.-..+|-++
T Consensus 38 ~A~~~gadlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~ii~-g~~~~~~~~~~yNs~~~i~~~ 116 (287)
T cd07568 38 EAAEAGAQIVCLQEIFYGPYFCAEQDTKWYEFAEEIPNGPTTKRFAALAKEYNMVLIL-PIYEKEQGGTLYNTAAVIDAD 116 (287)
T ss_pred HHHHcCCcEEEcccccCCCCCccccccchhhhcccCCCChHHHHHHHHHHHCCEEEEE-EeEEEcCCCcEEEEEEEECCC
Confidence 345689999998753 2321110 001244578889999887775 221111123456443333389
Q ss_pred CcEEEe
Q 009537 165 GDMIAQ 170 (532)
Q Consensus 165 G~ilaq 170 (532)
|+++..
T Consensus 117 G~i~~~ 122 (287)
T cd07568 117 GTYLGK 122 (287)
T ss_pred CcEeeE
Confidence 998754
No 152
>PF13941 MutL: MutL protein
Probab=41.09 E-value=1.1e+02 Score=34.07 Aligned_cols=140 Identities=21% Similarity=0.260 Sum_probs=76.9
Q ss_pred HHHhCCCeEEEecCCCcchHHHHHHHHHHHHHHHHH------HhcCchhHHHHHHHhcccC-CC------CCCCc-----
Q 009537 257 LRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKE------IANGDEQVKADAIRIGRYA-NG------EFPTE----- 318 (532)
Q Consensus 257 lrrs~~~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a------~~~~~~~~~~~~~~i~~~~-~~------~~p~~----- 318 (532)
|+..+.. +|-|+||+|.=-.-++++ ..+++.++ |=.||.++-.+++.+-... .+ ..|+-
T Consensus 120 i~~~~PD--iILLaGGtDgG~~~~il~-nA~~La~~~~~~pVIyAGN~~a~~~v~~il~~~~~~~~~~~NV~P~i~~ln~ 196 (457)
T PF13941_consen 120 IREIRPD--IILLAGGTDGGNKEVILH-NAEMLAEANLRIPVIYAGNKAAQDEVEEILEKAGKEVVITENVMPKIDVLNV 196 (457)
T ss_pred HhccCCC--EEEEeCCccCCchHHHHH-HHHHHHhCCCCCcEEEECCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCCcCh
Confidence 4444444 445699999855445543 23333332 1148888888888765411 01 12221
Q ss_pred -h-hh-----ccCCe------------EEEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEechHHHHHHHHHhhh-----
Q 009537 319 -S-RE-----FAKRI------------FYTVFMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQT----- 374 (532)
Q Consensus 319 -~-~e-----~~~~~------------~~t~~m~t~nSs~~t~~~A~~LA~~iG~~h~~i~Id~~v~a~~~~f~~----- 374 (532)
| ++ +.+++ +-+..||| +..-...++.||+.-+-....|||-..-..+.+....
T Consensus 197 ~paR~~I~~~F~~~Ii~akGl~~~~~~~~~~i~PT---P~AVl~~~~lla~~~~g~llvVDIGGATTDVhSv~~~~~~~~ 273 (457)
T PF13941_consen 197 EPAREAIREVFLRHIIQAKGLSKLREMVDGPIMPT---PAAVLRAAELLAEGGIGDLLVVDIGGATTDVHSVAEGSPEIP 273 (457)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHhCCcccCC---HHHHHHHHHHHHhcccCCEEEEEccCcccchhhhccCCcccc
Confidence 1 11 11111 12344443 4566677778888555688899996655555444421
Q ss_pred --hhCCCCCCc-chhhhcCCCEeeeceeeEE
Q 009537 375 --LTGKRPRYK-LDEVDMGMTYEELSVYGRL 402 (532)
Q Consensus 375 --~~g~~p~~~-tDE~dmGmtY~~L~~~~rl 402 (532)
.....|..+ |=|.||||-|-..+.+...
T Consensus 274 ~~~~~~ep~~kRTVEGDLGmr~sa~~l~e~~ 304 (457)
T PF13941_consen 274 GIVLKPEPYAKRTVEGDLGMRYSAPNLLEAA 304 (457)
T ss_pred ccccCCcchhhhheeccccceechHHHHHhc
Confidence 111223333 8899999999988877654
No 153
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=39.50 E-value=1.3e+02 Score=29.60 Aligned_cols=71 Identities=15% Similarity=0.090 Sum_probs=39.6
Q ss_pred HHHHHhCCCeEEEEccCCC--ccCCcH----------HHHHHHHHHHHHHhCCeEEEEcCCcCCCCceeeeccEEEE-eC
Q 009537 98 HADLALNGVEVFMNASGSH--HQLRKL----------DYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVV-VN 164 (532)
Q Consensus 98 ~~~lal~GaeIIlnpSaS~--~~~~k~----------~~r~~li~~~a~~~g~~yvyaN~~G~dg~~l~fdG~S~I~-~n 164 (532)
....+.+|||||+-|=.+- +..... ....+.++..|.+++++++.- ..-.++++-+|.. ++++ ++
T Consensus 23 i~~a~~~g~dlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G-~~~~~~~~~~yNs-~~~i~~~ 100 (255)
T cd07581 23 LAEAAAAGADLVVFPEYTMARFGDGLDDYARVAEPLDGPFVSALARLARELGITVVAG-MFEPAGDGRVYNT-LVVVGPD 100 (255)
T ss_pred HHHHHHcCCCEEECcchhcCCCCcchhhHHhhhccCCCHHHHHHHHHHHHcCeEEEEE-eeeeCCCCcEEEe-EEEECCC
Confidence 3456679999999885432 111110 123456778888887766642 2222222234543 4444 89
Q ss_pred CcEEEe
Q 009537 165 GDMIAQ 170 (532)
Q Consensus 165 G~ilaq 170 (532)
|+++..
T Consensus 101 G~i~~~ 106 (255)
T cd07581 101 GEIIAV 106 (255)
T ss_pred CcEEEE
Confidence 998764
No 154
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=39.27 E-value=1e+02 Score=31.50 Aligned_cols=41 Identities=24% Similarity=0.264 Sum_probs=27.6
Q ss_pred HHHHHHHHhCCCeEEEecCCCcchHHHHHHHHHHHHHHHHH
Q 009537 252 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKE 292 (532)
Q Consensus 252 ~L~dylrrs~~~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a 292 (532)
-+.+|+-..|..|+++.-|.|==.+++..=-..+.+.++++
T Consensus 26 ~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~ 66 (289)
T PF00701_consen 26 RLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEA 66 (289)
T ss_dssp HHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHH
Confidence 46688889999999999888865555554444444444544
No 155
>PRK10490 sensor protein KdpD; Provisional
Probab=38.29 E-value=3.2e+02 Score=32.92 Aligned_cols=48 Identities=19% Similarity=0.245 Sum_probs=34.7
Q ss_pred EEEEEeCCCCC---CHH---HHHHHHHHHHHhCCceEEEechHHHHHHHHHhhh
Q 009537 327 FYTVFMGSENS---SQE---TRMRAKKLADEIGSWHLDVSIDTVVSAFLSLFQT 374 (532)
Q Consensus 327 ~~t~~m~t~nS---s~~---t~~~A~~LA~~iG~~h~~i~Id~~v~a~~~~f~~ 374 (532)
++.+|.-+.+. +.+ ...+..+||+++|+....+.=+++.+++......
T Consensus 281 ~~~l~V~~~~~~~~~~~~~~~l~~~~~lA~~lGa~~~~~~~~dva~~i~~~A~~ 334 (895)
T PRK10490 281 WHAVYVETPRLHRLPEKKRRAILSALRLAQELGAETATLSDPAEEKAVLRYARE 334 (895)
T ss_pred EEEEEEecCCcCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHH
Confidence 88888876532 222 2345567999999998888888888888766543
No 156
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t
Probab=37.78 E-value=1.3e+02 Score=29.74 Aligned_cols=72 Identities=13% Similarity=0.129 Sum_probs=39.7
Q ss_pred HHHHHhCCCeEEEEccCCC--ccCCc----------HHHHHHHHHHHHHHhCCeEEEEcCCcCCC-CceeeeccEEEE-e
Q 009537 98 HADLALNGVEVFMNASGSH--HQLRK----------LDYRIRAFISATHSRGGVYMYSNQQGCDG-GRLYFDGCSCVV-V 163 (532)
Q Consensus 98 ~~~lal~GaeIIlnpSaS~--~~~~k----------~~~r~~li~~~a~~~g~~yvyaN~~G~dg-~~l~fdG~S~I~-~ 163 (532)
....+.+|||||+-|=.+. +.... .......++..|.+++++++.-...-.++ ++.+|. +++++ +
T Consensus 24 i~~A~~~g~dlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~G~~~~~~~~~~~~yN-s~~~i~~ 102 (265)
T cd07572 24 IEEAAAQGAKLVVLPECFNYPGGTDAFKLALAEEEGDGPTLQALSELAKEHGIWLVGGSIPERDDDDGKVYN-TSLVFDP 102 (265)
T ss_pred HHHHHHCCCCEEECCccccCcCcchhhhhhhhccccCChHHHHHHHHHHHCCeEEEEeeeccccCCCCcEEE-EEEEECC
Confidence 3445678999999885432 21110 01234567788999988776543211111 123453 34444 8
Q ss_pred CCcEEEe
Q 009537 164 NGDMIAQ 170 (532)
Q Consensus 164 nG~ilaq 170 (532)
+|+++..
T Consensus 103 ~G~i~~~ 109 (265)
T cd07572 103 DGELVAR 109 (265)
T ss_pred CCeEEeE
Confidence 9998753
No 157
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.
Probab=36.08 E-value=1.5e+02 Score=29.55 Aligned_cols=70 Identities=14% Similarity=0.216 Sum_probs=39.5
Q ss_pred HHHHHhCCCeEEEEccC--CCccCCcH-------------HHHHHHHHHHHHHhCCeEEEEcCCcCCCCceeeeccEEEE
Q 009537 98 HADLALNGVEVFMNASG--SHHQLRKL-------------DYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVV 162 (532)
Q Consensus 98 ~~~lal~GaeIIlnpSa--S~~~~~k~-------------~~r~~li~~~a~~~g~~yvyaN~~G~dg~~l~fdG~S~I~ 162 (532)
.+..+.+|||||+-|=. +++..... ......++..|++++++++..-.. .+++ .+|. +++++
T Consensus 25 i~~A~~~gadlivfPE~~~~gy~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~i~~g~~~-~~~~-~~yN-s~~~i 101 (279)
T TIGR03381 25 VREAAARGAQIILLPELFEGPYFCKDQDEDYFALAQPVEGHPAIKRFQALAKELGVVIPVSFFE-KAGN-AYYN-SLAMI 101 (279)
T ss_pred HHHHHHCCCCEEEcccccCCCCcCCccccchHhhcCcCCCChHHHHHHHHHHHcCcEEEEeeee-cCCC-ceEE-eEEEE
Confidence 34456789999998843 23211100 123456788899998776643211 1222 3453 34455
Q ss_pred -eCCcEEEe
Q 009537 163 -VNGDMIAQ 170 (532)
Q Consensus 163 -~nG~ilaq 170 (532)
++|+++..
T Consensus 102 ~~~G~i~~~ 110 (279)
T TIGR03381 102 DADGSVLGV 110 (279)
T ss_pred CCCCCEEEE
Confidence 89998754
No 158
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=33.80 E-value=1.8e+02 Score=28.71 Aligned_cols=69 Identities=12% Similarity=0.134 Sum_probs=38.1
Q ss_pred HHHhCCCeEEEEccCCC--ccCC---c---------HHHHHHHHHHHHHHhCCeEEEEcC-CcCCCCceeeeccEEEE-e
Q 009537 100 DLALNGVEVFMNASGSH--HQLR---K---------LDYRIRAFISATHSRGGVYMYSNQ-QGCDGGRLYFDGCSCVV-V 163 (532)
Q Consensus 100 ~lal~GaeIIlnpSaS~--~~~~---k---------~~~r~~li~~~a~~~g~~yvyaN~-~G~dg~~l~fdG~S~I~-~ 163 (532)
..+.+||+||+-|-.+. +... + .....+.++..|++++++++.--. ...+ .+-+|. +++++ +
T Consensus 27 ~a~~~ga~liv~PE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~G~~~~~~~-~~~~~N-s~~~i~~ 104 (258)
T cd07584 27 EAAAEGADLICFPELATTGYRPDLLGPKLWELSEPIDGPTVRLFSELAKELGVYIVCGFVEKGGV-PGKVYN-SAVVIDP 104 (258)
T ss_pred HHHHcCCCEEEcccccccCCCccccchhhHhhccCCCCcHHHHHHHHHHHcCeEEEEeehcccCC-CCceEE-EEEEECC
Confidence 44568999999885432 1111 0 012245678888888776655432 2211 123453 44455 8
Q ss_pred CCcEEEe
Q 009537 164 NGDMIAQ 170 (532)
Q Consensus 164 nG~ilaq 170 (532)
+|+++..
T Consensus 105 ~G~i~~~ 111 (258)
T cd07584 105 EGESLGV 111 (258)
T ss_pred CCCEEeE
Confidence 9998754
No 159
>COG0363 NagB 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]
Probab=32.85 E-value=52 Score=33.18 Aligned_cols=34 Identities=32% Similarity=0.359 Sum_probs=28.8
Q ss_pred CCcHHHHHhhHHHHHHHHHHHhCCC--eEEEecCCC
Q 009537 239 HSPEEEIAFGPGCWLWDYLRRSGAS--GFLLPLSGG 272 (532)
Q Consensus 239 ~~peeei~~~~a~~L~dylrrs~~~--g~~l~LSGG 272 (532)
+..++++....+.++.+++.+.... .+.|+||||
T Consensus 6 ~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~l~LsgG 41 (238)
T COG0363 6 FEDAEELAKAAAEIIADKLQAAKAERGRAVLALSGG 41 (238)
T ss_pred cCCHHHHHHHHHHHHHHHHHhhhhccCcEEEEECCC
Confidence 4556899999999999999887544 699999999
No 160
>PLN02798 nitrilase
Probab=32.73 E-value=1.8e+02 Score=29.49 Aligned_cols=70 Identities=10% Similarity=0.153 Sum_probs=39.2
Q ss_pred HHHHhCCCeEEEEccCCCc--cC-C--------cHHHHHHHHHHHHHHhCCeEEEE--cCCcCCCCceeeeccEEEE-eC
Q 009537 99 ADLALNGVEVFMNASGSHH--QL-R--------KLDYRIRAFISATHSRGGVYMYS--NQQGCDGGRLYFDGCSCVV-VN 164 (532)
Q Consensus 99 ~~lal~GaeIIlnpSaS~~--~~-~--------k~~~r~~li~~~a~~~g~~yvya--N~~G~dg~~l~fdG~S~I~-~n 164 (532)
...+.+|||||+-|=.+.. .. . ........++..|++++++++.- -....+++ -+|. +++++ ++
T Consensus 36 ~~A~~~gadlvvfPE~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~A~~~~i~iv~G~~~~~~~~~~-~~yN-s~~vi~~~ 113 (286)
T PLN02798 36 KEAAAAGAKLLFLPECFSFIGDKDGESLAIAEPLDGPIMQRYRSLARESGLWLSLGGFQEKGPDDS-HLYN-THVLIDDS 113 (286)
T ss_pred HHHHHCCCCEEEcCCCccccCcCchhhhhhcccCCCHHHHHHHHHHHHcCeEEEEeeeEcccCCCC-ceEE-EEEEECCC
Confidence 3445689999998864211 10 0 01123566788889998877632 22222223 3443 44555 89
Q ss_pred CcEEEe
Q 009537 165 GDMIAQ 170 (532)
Q Consensus 165 G~ilaq 170 (532)
|+|++.
T Consensus 114 G~i~~~ 119 (286)
T PLN02798 114 GEIRSS 119 (286)
T ss_pred CCEEEE
Confidence 998864
No 161
>KOG2840 consensus Uncharacterized conserved protein with similarity to predicted ATPase of the PP-loop superfamily [General function prediction only]
Probab=32.49 E-value=1.9e+02 Score=30.80 Aligned_cols=75 Identities=17% Similarity=0.154 Sum_probs=48.2
Q ss_pred CeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEEEeCCCCCCHHHH
Q 009537 263 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTVFMGSENSSQETR 342 (532)
Q Consensus 263 ~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~~m~t~nSs~~t~ 342 (532)
..+.++-|||.||++.|..+ ++|.. |-.+.. +. .+..++-++..--....
T Consensus 52 e~v~igasGgkdstvlA~v~--------~~Ln~----------r~~~g~--------~l----~Lls~degi~gyrd~sl 101 (347)
T KOG2840|consen 52 ERVAIGASGGKDSTVLAYVL--------DALNE----------RHDYGL--------RL----FLLSIDEGIRGYRDDSL 101 (347)
T ss_pred CccccccccchhHHHHHHHH--------HHhhh----------hcCCCc--------ee----eeeeccccccceeccHH
Confidence 45889999999999977765 44321 000100 00 23445555444444555
Q ss_pred HHHHHHHHHhCCceEEEechHHHHH
Q 009537 343 MRAKKLADEIGSWHLDVSIDTVVSA 367 (532)
Q Consensus 343 ~~A~~LA~~iG~~h~~i~Id~~v~a 367 (532)
..-+....+.|++..++...+++..
T Consensus 102 ~avkrn~~~~~lPL~ivs~~dl~~~ 126 (347)
T KOG2840|consen 102 EAVKRNGVQYGLPLCIVSYKDLYGE 126 (347)
T ss_pred HHHHHhhhhcCCceEEecHHHHhcc
Confidence 6667788899999999999888883
No 162
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=31.77 E-value=83 Score=35.39 Aligned_cols=54 Identities=19% Similarity=0.349 Sum_probs=40.9
Q ss_pred EEeeecccCCCc-hHHHHHHhCCCeEEEEccCCCccCCcHHHHHHHHHHHHHHhCCeEEEEcC
Q 009537 84 AVEVCEELFTPI-PPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQ 145 (532)
Q Consensus 84 G~eICeDlw~P~-~~~~~lal~GaeIIlnpSaS~~~~~k~~~r~~li~~~a~~~g~~yvyaN~ 145 (532)
|...+.|.|||- .....++..|+..|+.|.+| ++ ..-+.++|-++|+..+++..
T Consensus 454 gav~aSDafFPf~Dtie~aa~~Gv~aIiqPgGS---ir-----D~evI~aAne~gIamvfTg~ 508 (513)
T PRK00881 454 GAVLASDAFFPFRDGVEAAAKAGITAIIQPGGS---IR-----DEEVIAAADEHGIAMVFTGV 508 (513)
T ss_pred CeEEEeeCCCCchhHHHHHHHcCCeEEEeCCCC---CC-----hHHHHHHHHHcCCEEEECCC
Confidence 345568999984 33456889999999999997 32 34467888899999998764
No 163
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=31.28 E-value=1.9e+02 Score=29.72 Aligned_cols=89 Identities=13% Similarity=0.018 Sum_probs=49.3
Q ss_pred CcHHHHHhhHHHHHHHHHHHhC-CCeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCc
Q 009537 240 SPEEEIAFGPGCWLWDYLRRSG-ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTE 318 (532)
Q Consensus 240 ~peeei~~~~a~~L~dylrrs~-~~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~ 318 (532)
+...+|-..--.-+.|++...| ..|+++.-|-|==.+++-.=-..+++.++++ ...+ +|
T Consensus 13 ~~dg~iD~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~---------------~~~~---~p-- 72 (290)
T TIGR00683 13 NEDGTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDE---------------AKDQ---IA-- 72 (290)
T ss_pred CCCCCcCHHHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHH---------------hCCC---Cc--
Confidence 3333444444445678888899 9999888887755554433332333333333 2111 12
Q ss_pred hhhccCCeEEEEEeCCCCCCHHHHHHHHHHHHHhCCceEEE
Q 009537 319 SREFAKRIFYTVFMGSENSSQETRMRAKKLADEIGSWHLDV 359 (532)
Q Consensus 319 ~~e~~~~~~~t~~m~t~nSs~~t~~~A~~LA~~iG~~h~~i 359 (532)
++.++ +.+|..++.+.|+. |+++|+....+
T Consensus 73 -------vi~gv---~~~~t~~~i~la~~-a~~~Gad~v~v 102 (290)
T TIGR00683 73 -------LIAQV---GSVNLKEAVELGKY-ATELGYDCLSA 102 (290)
T ss_pred -------EEEec---CCCCHHHHHHHHHH-HHHhCCCEEEE
Confidence 23333 34566677776665 78888865544
No 164
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=30.78 E-value=1.5e+02 Score=30.22 Aligned_cols=45 Identities=16% Similarity=0.172 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhCCeEEEEcC-CcCCCCceeeeccEEEE-eCCcEEEec
Q 009537 126 IRAFISATHSRGGVYMYSNQ-QGCDGGRLYFDGCSCVV-VNGDMIAQG 171 (532)
Q Consensus 126 ~~li~~~a~~~g~~yvyaN~-~G~dg~~l~fdG~S~I~-~nG~ilaq~ 171 (532)
...++..|++++++++.-.. ...++++.+|.- ++++ ++|++++.-
T Consensus 79 ~~~l~~~A~~~~i~iv~G~~e~~~~~~~~~yNs-a~~i~~~G~i~~~y 125 (294)
T cd07582 79 TEALGEKAKELNVYIAANAYERDPDFPGLYFNT-AFIIDPSGEIILRY 125 (294)
T ss_pred HHHHHHHHHHcCEEEEEeeeeecCCCCCcEEEE-EEEECCCCcEEEEE
Confidence 46788889998877664332 221112345544 3444 899988643
No 165
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=30.65 E-value=1.8e+02 Score=32.24 Aligned_cols=97 Identities=14% Similarity=0.222 Sum_probs=66.1
Q ss_pred HHHHHHHHHhCCCeEEEecCCCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEEE
Q 009537 251 CWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYTV 330 (532)
Q Consensus 251 ~~L~dylrrs~~~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t~ 330 (532)
-+-+.-++....=|+++---|.+==.-- +...+..++|++.++.+++- |.-+
T Consensus 135 iGT~KVI~dHSTIGiVVTTDGSi~dipR------------e~Y~eAEervI~ELk~igKP----------------Fvil 186 (492)
T PF09547_consen 135 IGTRKVITDHSTIGIVVTTDGSITDIPR------------ENYVEAEERVIEELKEIGKP----------------FVIL 186 (492)
T ss_pred hcccceeccCCceeEEEecCCCccCCCh------------HHHHHHHHHHHHHHHHhCCC----------------EEEE
Confidence 3555556666667888887776532211 22222246888889888742 5555
Q ss_pred EeCCCCCCHHHHHHHHHHHHHhCCceEEEechHHHHH-HHHHhhhh
Q 009537 331 FMGSENSSQETRMRAKKLADEIGSWHLDVSIDTVVSA-FLSLFQTL 375 (532)
Q Consensus 331 ~m~t~nSs~~t~~~A~~LA~~iG~~h~~i~Id~~v~a-~~~~f~~~ 375 (532)
.=.+.-.|++|++-|++|.+..|.+...+|...+-+. +..+++.+
T Consensus 187 lNs~~P~s~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~v 232 (492)
T PF09547_consen 187 LNSTKPYSEETQELAEELEEKYDVPVLPVNCEQLREEDITRILEEV 232 (492)
T ss_pred EeCCCCCCHHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHH
Confidence 4445557899999999999999999999999877665 44555553
No 166
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=30.40 E-value=2.6e+02 Score=28.24 Aligned_cols=29 Identities=17% Similarity=0.270 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhCCCeEEEecCCCcchHHH
Q 009537 250 GCWLWDYLRRSGASGFLLPLSGGADSSSV 278 (532)
Q Consensus 250 a~~L~dylrrs~~~g~~l~LSGGiDSs~~ 278 (532)
-.-+.+||.+.|.+|+++.-|-|==.+++
T Consensus 20 ~~~~i~~l~~~Gv~gi~~~GstGE~~~ls 48 (281)
T cd00408 20 LRRLVEFLIEAGVDGLVVLGTTGEAPTLT 48 (281)
T ss_pred HHHHHHHHHHcCCCEEEECCCCcccccCC
Confidence 33466888889999998877766444443
No 167
>cd07576 R-amidase_like Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl
Probab=30.35 E-value=2.3e+02 Score=27.78 Aligned_cols=70 Identities=13% Similarity=0.213 Sum_probs=39.4
Q ss_pred HHHHHhCCCeEEEEccCCC--ccCC---------cHHHHHHHHHHHHHHhCCeEEEEcCCcCCCCceeeeccEEEE-eCC
Q 009537 98 HADLALNGVEVFMNASGSH--HQLR---------KLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVV-VNG 165 (532)
Q Consensus 98 ~~~lal~GaeIIlnpSaS~--~~~~---------k~~~r~~li~~~a~~~g~~yvyaN~~G~dg~~l~fdG~S~I~-~nG 165 (532)
....+.+||+||+-|-.+. +... ........++..|.+++++++.--.. .+++. +|. +++++ ++|
T Consensus 25 i~~a~~~ga~lvv~PE~~l~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~-~~~~~-~yN-s~~~i~~~G 101 (254)
T cd07576 25 AARAAAAGADLLVFPELFLTGYNIGDAVARLAEPADGPALQALRAIARRHGIAIVVGYPE-RAGGA-VYN-AAVLIDEDG 101 (254)
T ss_pred HHHHHHcCCCEEEccCccccCCCCcchhhhhhcccCChHHHHHHHHHHHcCCEEEEeccc-cCCCc-eEE-EEEEECCCC
Confidence 3455678999999885432 1111 01123456778888888776654221 12223 453 34444 899
Q ss_pred cEEEe
Q 009537 166 DMIAQ 170 (532)
Q Consensus 166 ~ilaq 170 (532)
+++..
T Consensus 102 ~i~~~ 106 (254)
T cd07576 102 TVLAN 106 (254)
T ss_pred CEeeE
Confidence 97754
No 168
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=29.86 E-value=1.2e+02 Score=31.61 Aligned_cols=65 Identities=14% Similarity=0.088 Sum_probs=45.7
Q ss_pred cccCCCchHHHHHHhCCCeEEEEccCCCccCCcHHHH----------HHHHHHHHHHhCCeEEEEcCCcCCCCceeeecc
Q 009537 89 EELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYR----------IRAFISATHSRGGVYMYSNQQGCDGGRLYFDGC 158 (532)
Q Consensus 89 eDlw~P~~~~~~lal~GaeIIlnpSaS~~~~~k~~~r----------~~li~~~a~~~g~~yvyaN~~G~dg~~l~fdG~ 158 (532)
.|++.|..........--|+|+|..|.+-.-.....+ -.-+..++.+.|..+|+.. .+.+|||.
T Consensus 34 ~Ditd~~~v~~~i~~~~PDvVIn~AAyt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lVhiS------TDyVFDG~ 107 (281)
T COG1091 34 LDITDPDAVLEVIRETRPDVVINAAAYTAVDKAESEPELAFAVNATGAENLARAAAEVGARLVHIS------TDYVFDGE 107 (281)
T ss_pred ccccChHHHHHHHHhhCCCEEEECccccccccccCCHHHHHHhHHHHHHHHHHHHHHhCCeEEEee------cceEecCC
Confidence 5899997677777777899999999876432211111 1245677888999999865 67889885
Q ss_pred E
Q 009537 159 S 159 (532)
Q Consensus 159 S 159 (532)
-
T Consensus 108 ~ 108 (281)
T COG1091 108 K 108 (281)
T ss_pred C
Confidence 4
No 169
>PLN02747 N-carbamolyputrescine amidase
Probab=28.99 E-value=1.7e+02 Score=29.78 Aligned_cols=70 Identities=9% Similarity=0.014 Sum_probs=39.3
Q ss_pred HHHHHhCCCeEEEEccCCC--ccCC----c---------HHHHHHHHHHHHHHhCCeEEEEcCCcCCCCceeeeccEEEE
Q 009537 98 HADLALNGVEVFMNASGSH--HQLR----K---------LDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVV 162 (532)
Q Consensus 98 ~~~lal~GaeIIlnpSaS~--~~~~----k---------~~~r~~li~~~a~~~g~~yvyaN~~G~dg~~l~fdG~S~I~ 162 (532)
.+..+..|||||+-|=.+- +... . .......+...|++++++++.. ....+ +..+| -+++++
T Consensus 31 i~~A~~~gadlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g-~~~~~-~~~~y-Ns~~~i 107 (296)
T PLN02747 31 VREAHAKGANIILIQELFEGYYFCQAQREDFFQRAKPYEGHPTIARMQKLAKELGVVIPVS-FFEEA-NNAHY-NSIAII 107 (296)
T ss_pred HHHHHHCCCcEEEcccccCCCCCccccccchhhhcccCCCChHHHHHHHHHHHcCeEEEee-eeecC-CCceE-EEEEEE
Confidence 3445678999999885431 1110 0 0123345788889998766643 22222 22344 344455
Q ss_pred -eCCcEEEe
Q 009537 163 -VNGDMIAQ 170 (532)
Q Consensus 163 -~nG~ilaq 170 (532)
++|++++.
T Consensus 108 ~~~G~i~~~ 116 (296)
T PLN02747 108 DADGTDLGL 116 (296)
T ss_pred CCCCCCcce
Confidence 89998754
No 170
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=28.43 E-value=2.4e+02 Score=29.12 Aligned_cols=36 Identities=14% Similarity=0.074 Sum_probs=22.6
Q ss_pred HHHhhHHHHHHHHHHHhCCCeEEEecCCCcchHHHH
Q 009537 244 EIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVA 279 (532)
Q Consensus 244 ei~~~~a~~L~dylrrs~~~g~~l~LSGGiDSs~~A 279 (532)
+|-..-..-|.||+-..|.+|+++.=|-|==.+++.
T Consensus 17 ~iD~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~ 52 (294)
T TIGR02313 17 DIDEEALRELIEFQIEGGSHAISVGGTSGEPGSLTL 52 (294)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCH
Confidence 333333345668888899999887766664444433
No 171
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=28.13 E-value=2.8e+02 Score=28.34 Aligned_cols=54 Identities=19% Similarity=0.141 Sum_probs=30.6
Q ss_pred CCcHHHHHhhHHHHHHHHHHHh-CCCeEEEecCCCcchHHHHHHHHHHHHHHHHH
Q 009537 239 HSPEEEIAFGPGCWLWDYLRRS-GASGFLLPLSGGADSSSVAAIVGCMCQLVVKE 292 (532)
Q Consensus 239 ~~peeei~~~~a~~L~dylrrs-~~~g~~l~LSGGiDSs~~A~lv~~m~~~~~~a 292 (532)
+.+..+|-..--.-|.+|+... |.+|+++.-|-|==.+++-.--..+++.++++
T Consensus 12 f~~dg~iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~ 66 (288)
T cd00954 12 FDENGEINEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEA 66 (288)
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHH
Confidence 3333444444444577888888 99999888776644444433333333333333
No 172
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=27.96 E-value=2.7e+02 Score=27.35 Aligned_cols=69 Identities=16% Similarity=0.269 Sum_probs=38.1
Q ss_pred HHHHhCCCeEEEEccCCC--ccCCcH--------HHHHHHHHHHHHHhCCeEEEEcC-CcCCCCceeeeccEEEE-eCCc
Q 009537 99 ADLALNGVEVFMNASGSH--HQLRKL--------DYRIRAFISATHSRGGVYMYSNQ-QGCDGGRLYFDGCSCVV-VNGD 166 (532)
Q Consensus 99 ~~lal~GaeIIlnpSaS~--~~~~k~--------~~r~~li~~~a~~~g~~yvyaN~-~G~dg~~l~fdG~S~I~-~nG~ 166 (532)
...+.+|++||+-|=.+. +..... ....+.++..|.+++++++.-.. .- +++ -+| -+++++ ++|+
T Consensus 26 ~~A~~~g~dlvv~PE~~l~g~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~G~~~~~-~~~-~~y-Ns~~~i~~~G~ 102 (253)
T cd07583 26 EEAAAAGADLIVLPEMWNTGYFLDDLYELADEDGGETVSFLSELAKKHGVNIVAGSVAEK-EGG-KLY-NTAYVIDPDGE 102 (253)
T ss_pred HHHHHCCCCEEEcCCccCCCCChhhHHhhhcccCchHHHHHHHHHHHcCcEEEeceEEec-CCC-cEE-EEEEEECCCCc
Confidence 344568999999886432 111110 12345677888888877664221 11 112 244 334444 8999
Q ss_pred EEEe
Q 009537 167 MIAQ 170 (532)
Q Consensus 167 ilaq 170 (532)
++..
T Consensus 103 i~~~ 106 (253)
T cd07583 103 LIAT 106 (253)
T ss_pred EEEE
Confidence 8754
No 173
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases). Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that
Probab=27.94 E-value=2.9e+02 Score=28.17 Aligned_cols=71 Identities=13% Similarity=0.252 Sum_probs=40.4
Q ss_pred HHHHHhCCCeEEEEccCCC--ccC---------CcH-------------HHHHHHHHHHHHHhCCeEEEEcCCcCCCCce
Q 009537 98 HADLALNGVEVFMNASGSH--HQL---------RKL-------------DYRIRAFISATHSRGGVYMYSNQQGCDGGRL 153 (532)
Q Consensus 98 ~~~lal~GaeIIlnpSaS~--~~~---------~k~-------------~~r~~li~~~a~~~g~~yvyaN~~G~dg~~l 153 (532)
....+.+||+||+-|-.+- +.. ++. ......++..|.+++++++..... .+++ .
T Consensus 26 i~~A~~~ga~lvvfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~-~~~~-~ 103 (297)
T cd07564 26 IEEAAANGAQLVVFPEAFIPGYPYWIWFGAPAEGRELFARYYENSVEVDGPELERLAEAARENGIYVVLGVSE-RDGG-T 103 (297)
T ss_pred HHHHHHCCCCEEEeccccccCCCchhhcCCcccchHHHHHHHHhCcCCCCHHHHHHHHHHHHcCcEEEEeeEe-ccCC-c
Confidence 3445678999999986442 111 000 012345677888888877754321 1223 3
Q ss_pred eeeccEEEE-eCCcEEEec
Q 009537 154 YFDGCSCVV-VNGDMIAQG 171 (532)
Q Consensus 154 ~fdG~S~I~-~nG~ilaq~ 171 (532)
+|. +++++ ++|+++..-
T Consensus 104 ~yN-s~~vi~~~G~i~~~y 121 (297)
T cd07564 104 LYN-TQLLIDPDGELLGKH 121 (297)
T ss_pred eEE-EEEEEcCCCCEeeee
Confidence 453 44455 899988654
No 174
>PRK12358 putative 6-phosphogluconolactonase; Provisional
Probab=27.07 E-value=75 Score=31.78 Aligned_cols=36 Identities=17% Similarity=0.294 Sum_probs=29.4
Q ss_pred CcHHHHHhhHHHHHHHHHHHhCCCeEEEecCCCcchHH
Q 009537 240 SPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSS 277 (532)
Q Consensus 240 ~peeei~~~~a~~L~dylrrs~~~g~~l~LSGGiDSs~ 277 (532)
...+|++...|..+.+++.+. +.+.|+||||-.-..
T Consensus 7 ~~~~e~~~~~a~~i~~~i~~~--~~~~l~lsgG~tp~~ 42 (239)
T PRK12358 7 KDYEEMSRVAAHHLLGYMSKT--KRVNLAITAGSTPKG 42 (239)
T ss_pred CCHHHHHHHHHHHHHHHHHhC--CCeEEEECCCCCHHH
Confidence 345899999999999999885 479999999965544
No 175
>KOG2555 consensus AICAR transformylase/IMP cyclohydrolase/methylglyoxal synthase [Nucleotide transport and metabolism]
Probab=26.40 E-value=1.1e+02 Score=33.67 Aligned_cols=57 Identities=25% Similarity=0.276 Sum_probs=44.6
Q ss_pred cEEEeeecccCCCch-HHHHHHhCCCeEEEEccCCCccCCcHHHHHHHHHHHHHHhCCeEEEEcCC
Q 009537 82 AVAVEVCEELFTPIP-PHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQ 146 (532)
Q Consensus 82 ~iG~eICeDlw~P~~-~~~~lal~GaeIIlnpSaS~~~~~k~~~r~~li~~~a~~~g~~yvyaN~~ 146 (532)
.-|+.+..|.|||-. ..-...+.|+..|..|++|-. ...+..++.+.|+.|+..|.+
T Consensus 527 l~~v~l~SDAFFPF~Dnv~ra~qsGv~yiaaP~GSv~--------D~~v~~a~d~~~iv~~~t~lR 584 (588)
T KOG2555|consen 527 LKGVSLSSDAFFPFPDNVYRAVQSGVKYIAAPSGSVM--------DKVVIDACDEFGIVLAETNLR 584 (588)
T ss_pred hcCceecccccccCchHHHHHHhcCCeEEecCCCcch--------hHHHHHHHHhhCeEEEecchh
Confidence 447788899999843 334577899999999999853 345778899999999998863
No 176
>PF08111 Pea-VEAacid: Pea-VEAacid family; InterPro: IPR012593 This family consists of the PEA-VEAacid neuropeptides family. These neuropeptides are isolated from the abdominal perisympathetic organs of the American cockroach. These peptides are found together with Pea-YLS-amide and Pea-SKNacid, giving a unique neuropeptide pattern in abdominal perisympathetic organs. The functions of these neuropeptides are unknown [].; GO: 0005184 neuropeptide hormone activity, 0007218 neuropeptide signaling pathway, 0005576 extracellular region
Probab=26.37 E-value=27 Score=19.77 Aligned_cols=12 Identities=50% Similarity=0.844 Sum_probs=10.1
Q ss_pred cCCcccccccCC
Q 009537 450 VLTPSYHAESYS 461 (532)
Q Consensus 450 ~~~Ps~h~e~ys 461 (532)
++||.-|.++|-
T Consensus 2 tltpgshvdsyv 13 (15)
T PF08111_consen 2 TLTPGSHVDSYV 13 (15)
T ss_pred cccCccchhhhc
Confidence 588999999884
No 177
>PRK07106 5-aminoimidazole-4-carboxamide ribonucleotide transformylase; Provisional
Probab=25.74 E-value=1.1e+02 Score=33.15 Aligned_cols=56 Identities=20% Similarity=0.294 Sum_probs=43.4
Q ss_pred EEEeeecccCCCchHH-HHHHhCCCeEEEEccCCCccCCcHHHHHHHHHHHHHHhCCeEEEEcCC
Q 009537 83 VAVEVCEELFTPIPPH-ADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQ 146 (532)
Q Consensus 83 iG~eICeDlw~P~~~~-~~lal~GaeIIlnpSaS~~~~~k~~~r~~li~~~a~~~g~~yvyaN~~ 146 (532)
-|...--|.|||-.-. ...+..|+.-|+-|.+|- |..-+.+++-+.|+..++++.+
T Consensus 330 ~G~vlASDAFFPF~D~Id~Aa~~GV~aIiQPGGSi--------RD~evI~aane~giaMvfTg~R 386 (390)
T PRK07106 330 TGVALGSDAFFPFGDNIERAAKSGVKYIAQPGGSI--------RDDNVIETCNKYGMTMAFTGVR 386 (390)
T ss_pred CCeEEEecccCCCCchHHHHHHcCCEEEECCCCCC--------CcHHHHHHHHHhCCEEEECCCC
Confidence 5677778999985433 456789999999999983 3455788999999999987653
No 178
>cd02903 Macro_BAL_like Macro domain, BAL_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to BAL (B-aggressive lymphoma) proteins, which contain one to three macro domains. Most BAL family macro domains belong to this family except for the most N-terminal domain in multiple-domain containing proteins. Most BAL proteins also contain a C-termin
Probab=25.55 E-value=2e+02 Score=26.06 Aligned_cols=37 Identities=8% Similarity=0.077 Sum_probs=22.5
Q ss_pred hhHHHHHHHhcccC--CCCCCCchhhc-cCCeEEEEEeCC
Q 009537 298 EQVKADAIRIGRYA--NGEFPTESREF-AKRIFYTVFMGS 334 (532)
Q Consensus 298 ~~~~~~~~~i~~~~--~~~~p~~~~e~-~~~~~~t~~m~t 334 (532)
.++.++++++.... .+...+++-.| |+.++|++.+..
T Consensus 43 ~~l~~~~~~~~~~~~~G~~~vT~~~~L~~k~IiH~~~p~~ 82 (137)
T cd02903 43 PELQKELDKAKLGQTVGSVIVTKGGNLPCKYVYHVVLPNW 82 (137)
T ss_pred HHHHHHHHHHcCCCCCCeEEEecCCCCCCCEEEEecCCCC
Confidence 45666676655432 23344455566 888999987654
No 179
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=25.30 E-value=2e+02 Score=29.39 Aligned_cols=70 Identities=13% Similarity=0.091 Sum_probs=43.1
Q ss_pred HHHHHHHhCC-CeEEEecC--CCcchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhcccCCCCCCCchhhccCCeEEE
Q 009537 253 LWDYLRRSGA-SGFLLPLS--GGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGRYANGEFPTESREFAKRIFYT 329 (532)
Q Consensus 253 L~dylrrs~~-~g~~l~LS--GGiDSs~~A~lv~~m~~~~~~a~~~~~~~~~~~~~~i~~~~~~~~p~~~~e~~~~~~~t 329 (532)
|++.|.. |+ ++++|.=. +|.|+.+||.+++ .+++ +++.+ +
T Consensus 73 lr~aLAm-GaD~avli~d~~~~g~D~~~tA~~La-------~ai~-----------~~~~D---------------L--- 115 (256)
T PRK03359 73 RKDVLSR-GPDELIVVIDDQFEQALPQQTASALA-------AAAQ-----------KAGFD---------------L--- 115 (256)
T ss_pred HHHHHHc-CCCEEEEEecCcccCcCHHHHHHHHH-------HHHH-----------HhCCC---------------E---
Confidence 4444444 44 46666432 5789999999886 3432 14433 3
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHhCCceEEE
Q 009537 330 VFMGSENSSQETRMRAKKLADEIGSWHLDV 359 (532)
Q Consensus 330 ~~m~t~nSs~~t~~~A~~LA~~iG~~h~~i 359 (532)
+.+|...+...|-.-.-.||+.||.++...
T Consensus 116 Vl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~ 145 (256)
T PRK03359 116 ILCGDGSSDLYAQQVGLLVGEILNIPAING 145 (256)
T ss_pred EEEcCccccCCCCcHHHHHHHHhCCCceee
Confidence 334444444566777889999999987554
No 180
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=25.27 E-value=3.1e+02 Score=28.00 Aligned_cols=29 Identities=28% Similarity=0.429 Sum_probs=19.2
Q ss_pred HHHhhHHHHHHHHHHHhCCCeEEEecCCC
Q 009537 244 EIAFGPGCWLWDYLRRSGASGFLLPLSGG 272 (532)
Q Consensus 244 ei~~~~a~~L~dylrrs~~~g~~l~LSGG 272 (532)
+|-...-.-+.+||.+.|.+|+++.-|-|
T Consensus 18 ~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~G 46 (292)
T PRK03170 18 SVDFAALRKLVDYLIANGTDGLVVVGTTG 46 (292)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECCcCC
Confidence 33333334567888889999998665544
No 181
>TIGR01198 pgl 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with
Probab=24.49 E-value=1.1e+02 Score=30.59 Aligned_cols=32 Identities=28% Similarity=0.297 Sum_probs=24.4
Q ss_pred cHHHHHhhHHHHHHHHHHHh--CCCeEEEecCCC
Q 009537 241 PEEEIAFGPGCWLWDYLRRS--GASGFLLPLSGG 272 (532)
Q Consensus 241 peeei~~~~a~~L~dylrrs--~~~g~~l~LSGG 272 (532)
..+|+....+..+-+.+++. ..+.+.|+||||
T Consensus 4 ~~~~l~~~~a~~i~~~i~~~i~~~~~~~lalsGG 37 (233)
T TIGR01198 4 NSAELAEALAERIATKLQTALAERGQFSLALSGG 37 (233)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCC
Confidence 45788888888888877762 234689999999
No 182
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=23.58 E-value=2.9e+02 Score=29.56 Aligned_cols=70 Identities=13% Similarity=0.181 Sum_probs=39.1
Q ss_pred HHHhCCCeEEEEccCCCc--cC--C-c--H---------HHHHHHHHHHHHHhCCeEEEEcC-CcCCCCceeeeccEEEE
Q 009537 100 DLALNGVEVFMNASGSHH--QL--R-K--L---------DYRIRAFISATHSRGGVYMYSNQ-QGCDGGRLYFDGCSCVV 162 (532)
Q Consensus 100 ~lal~GaeIIlnpSaS~~--~~--~-k--~---------~~r~~li~~~a~~~g~~yvyaN~-~G~dg~~l~fdG~S~I~ 162 (532)
..+.+||+||+-|=.+.. .. . + . ......++..|++++++++..=. ...+.++.+|. +++++
T Consensus 98 ~Aa~~gadLivfPE~~l~g~~~~~~~~~~~~~~ae~~~~g~~~~~l~~lAk~~~i~Iv~gi~e~~~~~~~~~yN-ta~vi 176 (363)
T cd07587 98 AAAMAGVNIICFQEAWTMPFAFCTREKLPWCEFAESAEDGPTTKFCQELAKKYNMVIVSPILERDEEHGDTIWN-TAVVI 176 (363)
T ss_pred HHHHcCCCEEEccccccCCccccccccchHHHHhhccCCChHHHHHHHHHHHcCcEEEEeeeeeecCCCCcEEE-EEEEE
Confidence 345689999998854422 11 1 0 0 01234678899999888764211 11110233554 34444
Q ss_pred -eCCcEEEe
Q 009537 163 -VNGDMIAQ 170 (532)
Q Consensus 163 -~nG~ilaq 170 (532)
++|+++..
T Consensus 177 ~~~G~ilg~ 185 (363)
T cd07587 177 SNSGNVLGK 185 (363)
T ss_pred CCCCCEEee
Confidence 89998854
No 183
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=23.49 E-value=3.3e+02 Score=26.32 Aligned_cols=68 Identities=13% Similarity=0.179 Sum_probs=37.6
Q ss_pred HHHHhCCCeEEEEccCCC--ccCC-----------cHHHHHHHHHHHHHHhCCeEEEEcCCcCCCCceeeeccEEEE-eC
Q 009537 99 ADLALNGVEVFMNASGSH--HQLR-----------KLDYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSCVV-VN 164 (532)
Q Consensus 99 ~~lal~GaeIIlnpSaS~--~~~~-----------k~~~r~~li~~~a~~~g~~yvyaN~~G~dg~~l~fdG~S~I~-~n 164 (532)
...+.+|+|||+-|-.+. +... ......+.++..|.+++++++.--.. .+++ -+|. +++++ ++
T Consensus 25 ~~a~~~g~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~ii~G~~~-~~~~-~~~N-~~~~i~~~ 101 (253)
T cd07197 25 KEAAEQGADLIVLPELFLTGYSFESAKEDLDLAEELDGPTLEALAELAKELGIYIVAGIAE-KDGD-KLYN-TAVVIDPD 101 (253)
T ss_pred HHHHHCCCCEEEcCCccccCCccccchhhhhhcccCCchHHHHHHHHHHHhCeEEEeeeEE-ccCC-ceEE-EEEEECCC
Confidence 345568999999885432 1111 11234567888888887766542221 1112 2443 34444 88
Q ss_pred CcEEE
Q 009537 165 GDMIA 169 (532)
Q Consensus 165 G~ila 169 (532)
|+++.
T Consensus 102 G~i~~ 106 (253)
T cd07197 102 GEIIG 106 (253)
T ss_pred CeEEE
Confidence 99664
No 184
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.84 E-value=2e+02 Score=24.42 Aligned_cols=44 Identities=11% Similarity=0.147 Sum_probs=32.4
Q ss_pred HHHhCCCeEEEEccCCCccCCcHHHHHHHHHHHHHHhCCeEEEEcCCcC
Q 009537 100 DLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNQQGC 148 (532)
Q Consensus 100 ~lal~GaeIIlnpSaS~~~~~k~~~r~~li~~~a~~~g~~yvyaN~~G~ 148 (532)
.-....||+|+.+...-. +.-...++..|.+++.+++|++..|.
T Consensus 43 ~~~i~~aD~VIv~t~~vs-----H~~~~~vk~~akk~~ip~~~~~~~~~ 86 (97)
T PF10087_consen 43 PSKIKKADLVIVFTDYVS-----HNAMWKVKKAAKKYGIPIIYSRSRGV 86 (97)
T ss_pred HHhcCCCCEEEEEeCCcC-----hHHHHHHHHHHHHcCCcEEEECCCCH
Confidence 445678899998875311 12245688999999999999998774
No 185
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=22.63 E-value=4.1e+02 Score=27.01 Aligned_cols=34 Identities=15% Similarity=0.239 Sum_probs=22.5
Q ss_pred CCcHHHHHhhHHHHHHHHHHHhCCCeEEEecCCC
Q 009537 239 HSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGG 272 (532)
Q Consensus 239 ~~peeei~~~~a~~L~dylrrs~~~g~~l~LSGG 272 (532)
+.+..+|-...-.-+.+|+.+.|.+|+++.-|-|
T Consensus 10 f~~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstG 43 (285)
T TIGR00674 10 FKEDGSVDFAALEKLIDFQIENGTDAIVVVGTTG 43 (285)
T ss_pred cCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCc
Confidence 3333444444445677888889999998865555
No 186
>PLN00202 beta-ureidopropionase
Probab=22.60 E-value=3.2e+02 Score=29.77 Aligned_cols=69 Identities=14% Similarity=0.219 Sum_probs=40.5
Q ss_pred HHhCCCeEEEEccCC--CccC--C-c-H--------HHHHHHHHHHHHHhCCeEEEEcC--CcCCCCceeeeccEEEE-e
Q 009537 101 LALNGVEVFMNASGS--HHQL--R-K-L--------DYRIRAFISATHSRGGVYMYSNQ--QGCDGGRLYFDGCSCVV-V 163 (532)
Q Consensus 101 lal~GaeIIlnpSaS--~~~~--~-k-~--------~~r~~li~~~a~~~g~~yvyaN~--~G~dg~~l~fdG~S~I~-~ 163 (532)
.+.+|||||+-|=.+ ++.. . + . ......++..|++++++++.- . ...+.++.+| -+++++ +
T Consensus 122 Aa~~gadLVvfPE~~~~g~~~~~~~~~~~~~ae~~~g~~~~~l~~lA~~~~i~Iv~G-~~e~~~~~~~~~y-NSa~vI~~ 199 (405)
T PLN00202 122 AGAAGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTKFLQELARKYNMVIVSP-ILERDVNHGETLW-NTAVVIGN 199 (405)
T ss_pred HHHCCCCEEEecchhccccccccccchHHHHhhhCCCHHHHHHHHHHHHCCeEEEEE-eeeeecCCCCcEE-EEEEEECC
Confidence 456899999998643 3321 0 1 0 112467888899999987753 2 1111122345 344555 8
Q ss_pred CCcEEEec
Q 009537 164 NGDMIAQG 171 (532)
Q Consensus 164 nG~ilaq~ 171 (532)
+|+++..-
T Consensus 200 ~G~iig~Y 207 (405)
T PLN00202 200 NGNIIGKH 207 (405)
T ss_pred CCcEEEEE
Confidence 99988653
No 187
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases). ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.
Probab=22.58 E-value=2.3e+02 Score=28.49 Aligned_cols=67 Identities=12% Similarity=0.201 Sum_probs=37.2
Q ss_pred HHhCCCeEEEEccCCCcc-CCcHHHHHHHHHHHHHHhCCeEEEEcC-CcCCCCceeeeccEEEE-eCCcEEE
Q 009537 101 LALNGVEVFMNASGSHHQ-LRKLDYRIRAFISATHSRGGVYMYSNQ-QGCDGGRLYFDGCSCVV-VNGDMIA 169 (532)
Q Consensus 101 lal~GaeIIlnpSaS~~~-~~k~~~r~~li~~~a~~~g~~yvyaN~-~G~dg~~l~fdG~S~I~-~nG~ila 169 (532)
.+.+|++||+-|=.+-.. ........+.++..|++++++++.--. ...++ +-+|. .++++ ++|+++.
T Consensus 35 a~~~ga~lvvfPE~~l~g~~~~~~~~~~~l~~~ak~~~i~ii~G~~~~~~~~-~~~~N-s~~~i~~~G~i~~ 104 (270)
T cd07571 35 LADEKPDLVVWPETALPFDLQRDPDALARLARAARAVGAPLLTGAPRREPGG-GRYYN-SALLLDPGGGILG 104 (270)
T ss_pred cccCCCCEEEecCCcCCcccccCHHHHHHHHHHHHhcCCeEEEeeeeeccCC-CceEE-EEEEECCCCCCcC
Confidence 345689999988554211 111223456678888888887765332 22111 23343 33444 8898764
No 188
>PF10624 TraS: Plasmid conjugative transfer entry exclusion protein TraS; InterPro: IPR018898 Entry exclusion (Eex) is a process which prevents redundant transfer of DNA between donor cells. TraS is a protein involved in Eex. It blocks redundant conjugative DNA synthesis and transport between donor cells, and it is suggested that TraS interferes with a signalling pathway that is required to trigger DNA transfer []. TraS on the recipient cell is known to form an interaction with TraG on the donor cell [].
Probab=22.47 E-value=25 Score=32.42 Aligned_cols=21 Identities=48% Similarity=0.920 Sum_probs=15.4
Q ss_pred HHHHHhCCCeEEEecCCCcchHH
Q 009537 255 DYLRRSGASGFLLPLSGGADSSS 277 (532)
Q Consensus 255 dylrrs~~~g~~l~LSGGiDSs~ 277 (532)
||-|.+-+.| +|+|||+||+-
T Consensus 131 ~~~rtnpatg--~pm~gg~d~~g 151 (164)
T PF10624_consen 131 TYYRTNPATG--LPMHGGVDSAG 151 (164)
T ss_pred cccccCCCcC--CcccCCcccCC
Confidence 5666665555 69999999963
No 189
>COG4703 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.19 E-value=41 Score=27.57 Aligned_cols=43 Identities=26% Similarity=0.427 Sum_probs=31.4
Q ss_pred HHhhcccCcCcCCcccccccCCCCCCCccccccccCCCCCcchhhHHHHHHh
Q 009537 440 YYSINRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDELVKE 491 (532)
Q Consensus 440 ~~~~nrhKr~~~~Ps~h~e~ys~ddnr~d~r~fly~~~~~~~f~~i~~~~~~ 491 (532)
.+.+|--++. --+||+|++-|-||-|=-+. .++|..||-..-+
T Consensus 26 nFEr~G~vv~-------eV~ys~~~e~F~lr~~~~~e--~y~FD~IDlvaiE 68 (74)
T COG4703 26 NFERNGEVVC-------EVKYSEDNETFELRDVEDRE--KYPFDDIDLVAIE 68 (74)
T ss_pred hhhcCCEEEE-------EEEecCCCceEEEEEcccCc--cCccccccchhHH
Confidence 4455555553 34799999999999876655 5999999976544
No 190
>KOG3147 consensus 6-phosphogluconolactonase - like protein [Carbohydrate transport and metabolism]
Probab=22.16 E-value=1.1e+02 Score=31.34 Aligned_cols=35 Identities=29% Similarity=0.351 Sum_probs=26.4
Q ss_pred CCCcHHHHHhhHHHHHHHHHHHhCCCe--EEEecCCC
Q 009537 238 YHSPEEEIAFGPGCWLWDYLRRSGASG--FLLPLSGG 272 (532)
Q Consensus 238 ~~~peeei~~~~a~~L~dylrrs~~~g--~~l~LSGG 272 (532)
.+..++|+..+++.++-+-..++-.++ |-|+||||
T Consensus 13 v~~~~~el~~~l~~~~~~~s~~~~~~~g~F~i~lSGG 49 (252)
T KOG3147|consen 13 VFSSEEELIEALAGYIAEKSEKALKKRGRFTLALSGG 49 (252)
T ss_pred ecccHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCC
Confidence 345668888888888777666654444 99999999
No 191
>PRK09762 galactosamine-6-phosphate isomerase; Provisional
Probab=21.93 E-value=1.1e+02 Score=30.55 Aligned_cols=32 Identities=16% Similarity=0.182 Sum_probs=26.7
Q ss_pred CcHHHHHhhHHHHHHHHHHHhCCCeEEEecCCCc
Q 009537 240 SPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGA 273 (532)
Q Consensus 240 ~peeei~~~~a~~L~dylrrs~~~g~~l~LSGGi 273 (532)
...+++....|..|.+.+++.+ .+.|+||||-
T Consensus 7 ~~~~~~~~~~a~~i~~~i~~~~--~~~l~lsgGs 38 (232)
T PRK09762 7 ENYTALSERASEYLLAVIRSKP--DAVICLATGA 38 (232)
T ss_pred CCHHHHHHHHHHHHHHHHHHCC--CeEEEECCCC
Confidence 3458899999999999998854 7899999993
No 192
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=21.44 E-value=2.5e+02 Score=24.06 Aligned_cols=36 Identities=17% Similarity=0.189 Sum_probs=27.7
Q ss_pred EEEEeCCCCCCHHHHH---HHHHHHHHhCCceEEEechH
Q 009537 328 YTVFMGSENSSQETRM---RAKKLADEIGSWHLDVSIDT 363 (532)
Q Consensus 328 ~t~~m~t~nSs~~t~~---~A~~LA~~iG~~h~~i~Id~ 363 (532)
+.+|..|-.++.++++ +.+.|-+..|+.+.++||+.
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~ 40 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISM 40 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCC
Confidence 4567777767777776 56677788899999999974
No 193
>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production []. They all have distinct substrate specificity and include cyanide hydratases, aliphatic amidases, beta-alanine synthase, and a few other proteins with unknown molecular function. Sequence conservation over the entire length, as well as the similarity in the reactions catalyzed by the known enzymes in this family, points to a common catalytic mechanism. They have an invariant cysteine that is part of the catalytic site in nitrilases. Another highly conserved motif includes an invariant glutamic acid that might also be involved in catalysis [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0006807 nitrogen compound metabolic process; PDB: 2E2L_D 2E2K_D 2DYV_A 2DYU_B 3KLC_B 3IW3_A 3KI8_A 3IVZ_A 1EMS_A 2GGK_B ....
Probab=20.46 E-value=3.1e+02 Score=25.30 Aligned_cols=68 Identities=9% Similarity=0.145 Sum_probs=40.9
Q ss_pred HHHHhCCCeEEEEccCCCccC--------CcH----------HHHHHHHHHHHHHhCCeEEEEcCCcCCCCceeeeccEE
Q 009537 99 ADLALNGVEVFMNASGSHHQL--------RKL----------DYRIRAFISATHSRGGVYMYSNQQGCDGGRLYFDGCSC 160 (532)
Q Consensus 99 ~~lal~GaeIIlnpSaS~~~~--------~k~----------~~r~~li~~~a~~~g~~yvyaN~~G~dg~~l~fdG~S~ 160 (532)
...+.+|+|||+-|-.+-... ... ......+...+.++++.++.--. -.++++ +|....+
T Consensus 28 ~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~i~~G~~-~~~~~~-~~N~~~~ 105 (186)
T PF00795_consen 28 EEAARQGADLVVFPEMALPGYPNPGWCEDDFADLDEFAEPLDGPYLERLAELAKENGITIVAGIP-ERDDGG-LYNSAVV 105 (186)
T ss_dssp HHHHHTTESEEEEETTTTTCS-GGGSGHSSHHHHHHHHBHSTSHHHHHHHHHHHHHTSEEEEEEE-EEETTE-EEEEEEE
T ss_pred HHHHHCCCCEEEcCcchhcccccccccccccchhhhhccccccHHHHHHHHHHHhcCCccccccc-cccccc-ccceeEE
Confidence 345567999999996543222 000 12345678889999988776622 223233 5544444
Q ss_pred EEeCCcEE
Q 009537 161 VVVNGDMI 168 (532)
Q Consensus 161 I~~nG~il 168 (532)
|-++|+++
T Consensus 106 ~~~~g~~~ 113 (186)
T PF00795_consen 106 IDPDGEIL 113 (186)
T ss_dssp EETTSEEE
T ss_pred EEeeeccc
Confidence 44899988
No 194
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=20.19 E-value=3.7e+02 Score=27.75 Aligned_cols=36 Identities=14% Similarity=0.006 Sum_probs=23.1
Q ss_pred HHHhhHHHHHHHHHHHhCCCeEEEecCCCcchHHHH
Q 009537 244 EIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVA 279 (532)
Q Consensus 244 ei~~~~a~~L~dylrrs~~~g~~l~LSGGiDSs~~A 279 (532)
+|-..--.-|.+|+...|.+|+++.-|-|==.+++.
T Consensus 24 ~iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~ 59 (303)
T PRK03620 24 SFDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTP 59 (303)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCH
Confidence 333333345668888899999988777664444443
No 195
>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases). Saccharomyces cerevisiae NTA1 functions in the N-end rule protein degradation pathway. It specifically deaminates the N-terminal asparagine and glutamine residues of substrates of this pathway, to aspartate and glutamate respectively, these latter are the destabilizing residues. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 3.
Probab=20.17 E-value=4.9e+02 Score=26.82 Aligned_cols=67 Identities=6% Similarity=0.020 Sum_probs=37.4
Q ss_pred CCCeEEEEccCC--CccCCcH------------HHHHHHHHHHHHHhCCeEEEEcC-CcCCCCceeeeccEEEE-eCCcE
Q 009537 104 NGVEVFMNASGS--HHQLRKL------------DYRIRAFISATHSRGGVYMYSNQ-QGCDGGRLYFDGCSCVV-VNGDM 167 (532)
Q Consensus 104 ~GaeIIlnpSaS--~~~~~k~------------~~r~~li~~~a~~~g~~yvyaN~-~G~dg~~l~fdG~S~I~-~nG~i 167 (532)
+||+||+-|=.+ .+..... ......+++.|++++++++.--. ...++.+.+| -+++++ ++|++
T Consensus 35 ~gadLIVfPEl~ltGY~~~~~~~~~~~ae~~~~g~~~~~l~~lAk~~~i~Iv~G~~e~~~~~~~~~y-Nta~vi~~~G~i 113 (295)
T cd07566 35 KKPDILVLPELALTGYNFHSLEHIKPYLEPTTSGPSFEWAREVAKKFNCHVVIGYPEKVDESSPKLY-NSALVVDPEGEV 113 (295)
T ss_pred CCCcEEEcCCCCcccCCcccHHHHHHHHHhcCCCHHHHHHHHHHHhcCCEEEEeeeEecCCCCCceE-EEEEEEcCCCeE
Confidence 799999988543 2222110 01235567788888887765432 2211112345 445555 89998
Q ss_pred EEec
Q 009537 168 IAQG 171 (532)
Q Consensus 168 laq~ 171 (532)
++.-
T Consensus 114 i~~Y 117 (295)
T cd07566 114 VFNY 117 (295)
T ss_pred EEEE
Confidence 8653
Done!