Query 009538
Match_columns 532
No_of_seqs 133 out of 1344
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 07:27:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009538.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009538hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aps_A DI-OR tripeptide H+ sym 100.0 1.7E-28 5.9E-33 260.4 24.5 408 1-511 51-478 (491)
2 2xut_A Proton/peptide symporte 100.0 3.3E-28 1.1E-32 260.5 22.4 449 2-512 52-510 (524)
3 4gc0_A D-xylose-proton symport 100.0 1.3E-28 4.3E-33 261.3 18.4 421 3-528 54-486 (491)
4 1pw4_A Glycerol-3-phosphate tr 99.9 9.4E-26 3.2E-30 236.0 24.1 367 1-506 59-435 (451)
5 3o7q_A L-fucose-proton symport 99.9 2.6E-23 8.7E-28 216.8 25.3 321 1-465 58-408 (438)
6 2gfp_A EMRD, multidrug resista 99.9 2.4E-22 8.3E-27 205.4 12.5 137 2-169 33-169 (375)
7 2cfq_A Lactose permease; trans 99.8 2.6E-20 8.8E-25 193.8 7.5 357 1-507 40-402 (417)
8 1pw4_A Glycerol-3-phosphate tr 98.9 6.8E-09 2.3E-13 107.7 11.4 144 2-174 286-433 (451)
9 2cfq_A Lactose permease; trans 98.8 3E-09 1E-13 110.0 6.4 137 6-173 261-398 (417)
10 3o7q_A L-fucose-proton symport 98.7 4.1E-08 1.4E-12 101.4 12.1 134 2-169 293-427 (438)
11 4aps_A DI-OR tripeptide H+ sym 98.5 9.9E-07 3.4E-11 92.6 15.3 139 318-507 58-199 (491)
12 4gc0_A D-xylose-proton symport 98.5 9.6E-07 3.3E-11 92.6 14.1 146 5-177 313-465 (491)
13 2gfp_A EMRD, multidrug resista 98.4 8.8E-07 3E-11 89.5 9.5 111 318-463 39-149 (375)
14 2xut_A Proton/peptide symporte 98.3 5.7E-06 1.9E-10 87.6 14.0 136 318-503 58-197 (524)
15 4dve_A Biotin transporter BIOY 24.2 1.2E+02 0.0041 26.8 5.8 25 10-35 99-123 (198)
No 1
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.96 E-value=1.7e-28 Score=260.39 Aligned_cols=408 Identities=16% Similarity=0.256 Sum_probs=262.5
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhc-cccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCc
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDT-YFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTP 79 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~-~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 79 (532)
+|..+.+++.+.+.++..++++++|+++|| + |||+++.++.++++++.+++++++
T Consensus 51 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~~~~~~~~~~~~~~~~~~~~----------------------- 106 (491)
T 4aps_A 51 ITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPAVFWGGVLIMLGHIVLALPF----------------------- 106 (491)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHHHHHHHHHHHHHHHHHHSCC-----------------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHHHHhh-----------------------
Confidence 367889999999999999999999999999 7 999999999999999999998874
Q ss_pred hhHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHH
Q 009538 80 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGI 159 (532)
Q Consensus 80 ~~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v 159 (532)
+++.++++|+++|+|.|...|+..++++|++|+++ +.|+..++.++...++|..+||.+++++.++.|||+.|++
T Consensus 107 -~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~----~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~ 181 (491)
T 4aps_A 107 -GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHD----RRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSL 181 (491)
T ss_dssp -STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCT----THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred -hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccc----ccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 46679999999999999999999999999998533 3346789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcceeeecC---CCCC-chhhHHHHHHH--------------HHHhcccCCCCCCcccccccCCcc
Q 009538 160 PAFMMFLSCAMFFLGSRLYAKVK---PEGS-PLASTVQVFVA--------------AIKKRHLKLPEEPWLTLHNHIPKN 221 (532)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~ 221 (532)
.++..++..+.++...+++..++ ++.+ +..+..+.... ....+..+. ++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~---~~---------- 248 (491)
T 4aps_A 182 AAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSL---PA---------- 248 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCT---TH----------
T ss_pred HHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCccc---cc----------
Confidence 88877766666555444432211 1111 11111110000 000000000 00
Q ss_pred cccCCCCCCCcccchhhhcccCCcccccCCCCCCCCCccchhhhhhhhhhhhhhHhHHHHHHHHHHHhcccchhhhhhhh
Q 009538 222 CINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQAL 301 (532)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (532)
.................. ..|+.. .....++++......+++....++..+.+..+.......
T Consensus 249 ----------~~~~~~~~~~~~~~~~~~------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (491)
T 4aps_A 249 ----------YINLLTIVAIAIPVFYFA------WMISSV-KVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAA 311 (491)
T ss_dssp ----------HHHHHHHHHHHHHHHHHH------HHC-------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHH
T ss_pred ----------chhhhhHHHHHHHHHHHH------HHhhcc-cccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 000000000000000000 000000 000112334444445555555566665555443222211
Q ss_pred -ccCcccCCccceeChhhhhhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009538 302 -QSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRR 380 (532)
Q Consensus 302 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 380 (532)
..+... ...+.....+.+..++..++.+++ .+|+++|+ ......+..++++.++++++........
T Consensus 312 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l----~~r~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 378 (491)
T 4aps_A 312 ERVDSSW------FPVSWFQSLNPLFIMLYTPFFAWL----WTAWKKNQ--PSSPTKFAVGLMFAGLSFLLMAIPGALY- 378 (491)
T ss_dssp HSCCCSS------SCSGGGTTHHHHHHHHHHHHHHHH----HHHTTTC-----CHHHHHHHHHHHHHHHTTTHHHHHHC-
T ss_pred HHhccCc------cCHHHHhccchHHHHHHHHHHHHH----HHHHhccC--CCchHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 112111 334556667777777777776665 67776663 3445667788888888877766543210
Q ss_pred hhhccCCCcccccCCccccchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009538 381 SLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISM 460 (532)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~ 460 (532)
....+.+.++.++.+++.+++.+...+..++++.|.+|++.||+++|+.+..+.+|+.+++.+.+.
T Consensus 379 --------------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~ 444 (491)
T 4aps_A 379 --------------GTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTL 444 (491)
T ss_dssp --------------CCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGG
T ss_pred --------------CCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001234677788888999999999999999999999999999999999999999999999999888
Q ss_pred hcccccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 009538 461 VHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYK 511 (532)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~ 511 (532)
+.+. ++...|..++++++++.+..++..++.+++
T Consensus 445 ~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 445 YNAK-----------------SEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp GGGS-----------------STTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred Hhcc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7653 134577777888887777777766655544
No 2
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.96 E-value=3.3e-28 Score=260.49 Aligned_cols=449 Identities=21% Similarity=0.332 Sum_probs=258.6
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccc-cchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCch
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYF-GRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPW 80 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~-Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (532)
++.+.+++.+++.++..++++++|+++|| + |||+++.++.++++++.+++++++ .
T Consensus 52 s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~~g~r~~~~~~~~~~~~~~~~~~~~~-----------------------~ 107 (524)
T 2xut_A 52 RGAVAKDVFHSFVIGVYFFPLLGGWIADR-FFGKYNTILWLSLIYCVGHAFLAIFE-----------------------H 107 (524)
T ss_dssp TTTTHHHHHHHHHHHHHHTHHHHHHHHTT-SSCSHHHHHHHHHHHHHHHHHHHHTS-----------------------S
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHHHHHHHHhc-----------------------c
Confidence 57788999999999999999999999999 7 999999999999999999999874 1
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHH
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP 160 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~ 160 (532)
+++.++++|+++|+|.|...|+..+++.|++|+++ |..+...+++++...++|.++||.+++++.+..|||++|++.
T Consensus 108 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~ 184 (524)
T 2xut_A 108 SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN---KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIP 184 (524)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT---TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 46789999999999999999999999999988533 222345677799999999999999999999889999999998
Q ss_pred HHHHHHHHHHHHhhcceeeecCCCCCchhhHHHHHHHHHHhcccCCCCCCcccccccCCcccccCCCCCCCcccchhhhc
Q 009538 161 AFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAA 240 (532)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (532)
++..++..+.++...++.+..+|++++..+..+.+....+++..+.+ .... .................+.........
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (524)
T 2xut_A 185 GVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKG-NIGL-VLALIGGVSAAYALVNIPTLGIVAGLC 262 (524)
T ss_dssp HHHHHHHHHHHHSSSSSCCCCC--------------------CTTHH-HHHH-HHHHHHHHHHHHTGGGTTTTCSSHHHH
T ss_pred HHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccC-ccch-hhhhhhhhhhhhhhcccchhhhhhhhh
Confidence 88776666655554444333223222211111111111111100000 0000 000000000000000000000000000
Q ss_pred cc-CCcccccCCCCCCCCCc-------cchhhhhhhhhhhhhhHhHHHHHHHHHHHhcccchhhhhhhhccCcccCCccc
Q 009538 241 IM-TPEDQIKSDGSAINPWR-------LSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHF 312 (532)
Q Consensus 241 ~~-~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (532)
.. ....+. + ...+|. .+......+.|+.......+.....++..+.+..+.+..+....+... +
T Consensus 263 ~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 334 (524)
T 2xut_A 263 CAMVLVMGF-V---GAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ----W 334 (524)
T ss_dssp HHHHHHHHH-H---HTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS----S
T ss_pred hhhhhhhcc-c---ccchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe----e
Confidence 00 000000 0 000010 000001123444444444555555556665555554433333332211 1
Q ss_pred eeChhhhhhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccc
Q 009538 313 KIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQ 392 (532)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (532)
.+.+.....+.+..++..++.+++..|..+|.++| .++.+++.+|+++.+++++..+.....
T Consensus 335 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~-------------- 396 (524)
T 2xut_A 335 -FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVK---LTALRKMGAGIAITGLSWIVVGTIQLM-------------- 396 (524)
T ss_dssp -SCHHHHHTTSGGGHHHHGGGTTTC---------------CCHHHHHTHHHHHHHHHHTTTTTTTT--------------
T ss_pred -ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHH--------------
Confidence 24566677778888888899888766666665433 445566777888877777665543100
Q ss_pred cCCccccchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCC
Q 009538 393 RRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGD 472 (532)
Q Consensus 393 ~~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~ 472 (532)
.+.....+.+++++.+++.+++++...+..++++.|.+|++.||+++|++++...+|+.+++.+.+.+.+..+ .+
T Consensus 397 -~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~----~~ 471 (524)
T 2xut_A 397 -MDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV----TE 471 (524)
T ss_dssp -TTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH----HH
T ss_pred -hcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc----cc
Confidence 0001124667778888999999999999999999999999999999999999999999999999998875321 01
Q ss_pred CCCC-CCcchhHHHHHHHHHHHHHHHHHHHHHhhhcccccC
Q 009538 473 WLPE-DLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKG 512 (532)
Q Consensus 473 ~~~~-~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~ 512 (532)
|.+. ..+ ...+.|++.+++.+++.+.++++.++.+++.
T Consensus 472 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (524)
T 2xut_A 472 QIVQTGMS--VTAFQMFFFAGFAILAAIVFALYARSYQMQD 510 (524)
T ss_dssp HHHHHHSC--HHHHHHHHHHHHHHHHHHHHC----------
T ss_pred cccccccc--ccccHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 1100 000 0122366777777777777666666555443
No 3
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.96 E-value=1.3e-28 Score=261.33 Aligned_cols=421 Identities=12% Similarity=0.064 Sum_probs=233.1
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCC--Cch
Q 009538 3 SITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGP--TPW 80 (532)
Q Consensus 3 ~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~ 80 (532)
+.+.++++++|.++..++++++|+++||+ |||++++++.+++++++++++++........ ...... -.+
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~--------~~~~~~~~~a~ 124 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSIN--------PDNTVPVYLAG 124 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSS--------SSSSCCGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhc--------chhHHHHHHhh
Confidence 34678999999999999999999999996 9999999999999999999997532110000 000000 014
Q ss_pred hHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccc--------ccc
Q 009538 81 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQS--------DVS 152 (532)
Q Consensus 81 ~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~--------~~g 152 (532)
|+..++++|+++|+|.|...+..+.+++|+.|+ +.|++..+.++....+|.++++.++..+.. ..+
T Consensus 125 ~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~------~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4gc0_A 125 YVPEFVIYRIIGGIGVGLASMLSPMYIAELAPA------HIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDG 198 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCG------GGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH------HhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchh
Confidence 788999999999999999999999999999874 334668889999999999999888776543 245
Q ss_pred chhhhHHHHHHHHHHHHHHHh--hcceeeecCCCCCchhhHHHHHHHHHHhcccCCCCCCcccccccCCcccccCCCCCC
Q 009538 153 WAWGLGIPAFMMFLSCAMFFL--GSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHT 230 (532)
Q Consensus 153 w~~~F~v~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (532)
||+.+.+..+..++.++..+. .+|++...+.+.++..+..+. ...+..... +.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~---~~~~~~~~~----~~------------------ 253 (491)
T 4gc0_A 199 WRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRK---IMGNTLATQ----AV------------------ 253 (491)
T ss_dssp HHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHH---HHHHHHHHH----HH------------------
T ss_pred hHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHH---hcCCchhHH----HH------------------
Confidence 777777766654444433222 233333333332222222211 111000000 00
Q ss_pred CcccchhhhcccCCcccccCCCCCCCCCccchhhhhhhhhhhhhhHhHHHHHHHHHHHhcccchhhhhhhhccCcccCCc
Q 009538 231 GQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNT 310 (532)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (532)
.+..... ...++ .. ........++......... +..+........+. .......+
T Consensus 254 -----~~~~~~~---~~~~~-~~--------~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~-- 308 (491)
T 4gc0_A 254 -----QEIKHSL---DHGRK-TG--------GRLLMFGVGVIVIGVMLSI-----FQQFVGINVVLYYA-PEVFKTLG-- 308 (491)
T ss_dssp -----HHHHHHH---HHHHH-HT--------THHHHSCCTHHHHHHHHHH-----HHHHTCHHHHHHHH-HHHHHHSS--
T ss_pred -----HHHHHHH---Hhhhh-hh--------hHHHHhcccHHHHHHHHHH-----HHHHhhhhHHHhcc-hHHHHhcC--
Confidence 0000000 00000 00 0000000111111111000 00000000100000 00000111
Q ss_pred cceeChhhhhhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcc
Q 009538 311 HFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGL 390 (532)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (532)
..............+..++...+ ...+.+|++|| +.+..+...++++++..+....
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~----~~~l~dr~Grr-------~~~~~~~~~~~~~~~~l~~~~~------------- 364 (491)
T 4gc0_A 309 ASTDIALLQTIIVGVINLTFTVL----AIMTVDKFGRK-------PLQIIGALGMAIGMFSLGTAFY------------- 364 (491)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCSH-------HHHHHHHHHHHHHHHHHHHHHH-------------
T ss_pred CCccchhhHHHHHHHHHHHHHHH----HHHHHHhhcCc-------chhccchHHHHHHHHHHHHHHh-------------
Confidence 00000111112222222232232 22336666665 5666677777777666554422
Q ss_pred cccCCccccchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCC
Q 009538 391 EQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGAST 470 (532)
Q Consensus 391 ~~~~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~~~ 470 (532)
....+...++..+++.........+..+.+..|.+|.+.|++++|+.+..+++++.+++.+.+.+.+...
T Consensus 365 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~---- 434 (491)
T 4gc0_A 365 ------TQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSW---- 434 (491)
T ss_dssp ------TTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHH----
T ss_pred ------cccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 0112222223333333333334456778999999999999999999999999999999999887754210
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCcccccccccCCC
Q 009538 471 GDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAPEVAMEKLNPE 528 (532)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (532)
.. ...+..+.|++++++++++.++.+++.||+|+|+.||.++.+++++.+++
T Consensus 435 ---~~---~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~~~~~ 486 (491)
T 4gc0_A 435 ---LV---AHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPETKKTQ 486 (491)
T ss_dssp ---HH---HHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC-------
T ss_pred ---HH---hhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCCcccc
Confidence 00 00012356788899999999999999999999999988777665554443
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.94 E-value=9.4e-26 Score=236.05 Aligned_cols=367 Identities=11% Similarity=-0.024 Sum_probs=230.4
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHH----HhhcccCCCCCCCCCCCCCCCC
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSL----TAAISKLHPPDCGNQDSGACPG 76 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~----a~~~~~~~~~~~~~~~~~~~~~ 76 (532)
+++.+.+++.+++.++..++++++|+++||+ |||++++++.++++++.+++++ +.
T Consensus 59 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~-------------------- 117 (451)
T 1pw4_A 59 FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWATS-------------------- 117 (451)
T ss_dssp TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHCHHHHS--------------------
T ss_pred ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhhhhccc--------------------
Confidence 3678899999999999999999999999996 9999999999999999999999 64
Q ss_pred CCchhHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhcccccc-chh
Q 009538 77 PTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVS-WAW 155 (532)
Q Consensus 77 ~~~~~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~g-w~~ 155 (532)
+++.++++|+++|++.|...|...+++.|++|+ ++|++.+++++...++|.++||.+++++.+..| ||+
T Consensus 118 ----~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~------~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~ 187 (451)
T 1pw4_A 118 ----SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ------KERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHA 187 (451)
T ss_dssp ----SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTT------THHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTT
T ss_pred ----cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCc------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 466899999999999999999999999999874 234668999999999999999999999888888 999
Q ss_pred hhHHHHHHHHHHHHHHHhhcceeeecCCCCCchhhHHHHHHHHHHhcccCCCCCCcccccccCCcccccCCCCCCCcccc
Q 009538 156 GLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRC 235 (532)
Q Consensus 156 ~F~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (532)
.|++.++..++..+..+...|+.++.+...+ .++..+. .+.+.+
T Consensus 188 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~--~~~~~~--------------- 231 (451)
T 1pw4_A 188 ALYMPAFCAILVALFAFAMMRDTPQSCGLPP-------------------IEEYKND--YPDDYN--------------- 231 (451)
T ss_dssp CTHHHHHHHHHHHHHHHHHCCCSSTTTCCCS-------------------CTTTCCC-----------------------
T ss_pred HHHHHHHHHHHHHHHHHhhccCCHhhcCCCC-------------------hhhhccc--ccccch---------------
Confidence 9999888766655544444443211110000 0000000 000000
Q ss_pred hhhhcccCCcccccCCCCCCCCCccchhhhhhhhhhhhhh-HhHHHHHHHHHHHhcccchhhhhhhhccCcccCCcccee
Q 009538 236 LDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRV-IPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKI 314 (532)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (532)
+ +..+...++..........+.+... +..++....+....... + .......+ .-..
T Consensus 232 ----------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~g--~~~~ 288 (451)
T 1pw4_A 232 ----------E----KAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWS-P------TYLKEVKH--FALD 288 (451)
T ss_dssp ---------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHH-H------HHBTTBSC--CCHH
T ss_pred ----------h----hhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH-H------HHHHHhcC--CCHH
Confidence 0 0000000000000000001111111 11111111111111111 1 11111122 0001
Q ss_pred ChhhhhhhhhhhhHhHHhhhccchhhhcccc--ccCCCCCChhHHHHHHHHHHH-HHHHHHHHHHHHHhhhhccCCCccc
Q 009538 315 PAASYAIFSMLGLTIWIPIYDRIIVPRLQRL--TKKEGGITILQRMAIGMILAI-FTMIISGIIEDKRRSLALSRPVGLE 391 (532)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (532)
..+.......++.+++.++.+++ .+|+ ++| +.+..+..+.. ++++.....
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~g~l----~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~---------------- 341 (451)
T 1pw4_A 289 KSSWAYFLYEYAGIPGTLLCGWM----SDKVFRGNR-------GATGVFFMTLVTIATIVYWMN---------------- 341 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHTSTTCH-------HHHHHHHHHHHHHHHHHTTSC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHhcCCc-------hhHHHHHHHHHHHHHHHHHHh----------------
Confidence 12233444445555555554443 5554 332 34444444443 444333321
Q ss_pred ccCCccccchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHH-HHHHHHHHHHHhcccccCCCC
Q 009538 392 QRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAI-SNYLNGFLISMVHRFTKGAST 470 (532)
Q Consensus 392 ~~~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~i-g~~l~~~~~~~~~~~~~~~~~ 470 (532)
...+.+..+...++.+++.....+..+.++.|.+|++.||+++|+.+....+ |..+++.+.+.+.+..
T Consensus 342 ------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~----- 410 (451)
T 1pw4_A 342 ------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF----- 410 (451)
T ss_dssp ------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-----
T ss_pred ------cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----
Confidence 1124566666777788888888888889999999999999999999999999 9999999999998753
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 009538 471 GDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAK 506 (532)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~ 506 (532)
++...|+..+++.+++.+..+...+
T Consensus 411 -----------g~~~~~~~~~~~~~~~~~~~~~~~~ 435 (451)
T 1pw4_A 411 -----------GWDGGFMVMIGGSILAVILLIVVMI 435 (451)
T ss_dssp -----------CSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------CcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2456777777777777766655443
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.92 E-value=2.6e-23 Score=216.81 Aligned_cols=321 Identities=12% Similarity=0.055 Sum_probs=204.9
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHH---HHHhhcccCCCCCCCCCCCCCCCCC
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVL---SLTAAISKLHPPDCGNQDSGACPGP 77 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~---~~a~~~~~~~~~~~~~~~~~~~~~~ 77 (532)
+++.+.+++.+.+.++..++.+++|+++||+ |||++++++.++++++.+++ ++++
T Consensus 58 ~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~--------------------- 115 (438)
T 3o7q_A 58 LTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLYALGAALFWPAAEIM--------------------- 115 (438)
T ss_dssp CCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHHHHTT---------------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHHHHHHHHHHHHhccccc---------------------
Confidence 3678899999999999999999999999996 99999999999999999999 5543
Q ss_pred CchhHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhcc-cccc----
Q 009538 78 TPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQ-SDVS---- 152 (532)
Q Consensus 78 ~~~~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~-~~~g---- 152 (532)
+++.++++|+++|+|.|...|...++++|++|++ +|++.+++++...++|.++||.+++++. +..+
T Consensus 116 ---~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~ 186 (438)
T 3o7q_A 116 ---NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPES------SGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQ 186 (438)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCST------THHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCH
T ss_pred ---cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCch------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 6889999999999999999999999999998752 3355799999999999999999999988 5554
Q ss_pred ---------------------chhhhHHHHHHHHHHHHHHHhhcceeeecCCCCCchhhHHHHHHHHHHhcccCCCCCCc
Q 009538 153 ---------------------WAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPW 211 (532)
Q Consensus 153 ---------------------w~~~F~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (532)
||+.|++.++..++..+.++.. +.++.+++.+ ++++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~--~~p~~~~~~~---------------------~~~~ 243 (438)
T 3o7q_A 187 DVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLT--KFPALQSDNH---------------------SDAK 243 (438)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCTTTCC---------------------CCSS
T ss_pred cccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH--cCCccccccc---------------------cccc
Confidence 9999987666544444433321 1111110000 0000
Q ss_pred ccccccCCcccccCCCCCCCcccchhhhcccCCcccccCCCCCCCCCccchhhhhhhhhhhhh-hHhHHHHHHHHHHHhc
Q 009538 212 LTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIR-VIPIWASAIVYYVALV 290 (532)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 290 (532)
+ + .... ++ ++..+ .+.+.. .+..++..........
T Consensus 244 -------------~-----~-~~~~--------------------~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 279 (438)
T 3o7q_A 244 -------------Q-----G-SFSA--------------------SL----SRLAR-IRHWRWAVLAQFCYVGAQTACWS 279 (438)
T ss_dssp -------------T-----T-SHHH--------------------HH----HHHTT-CSHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------c-----c-chhh--------------------hH----HHHHh-ChHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 0000 00 00000 111111 1111112221222211
Q ss_pred ccchhhhhhhhccCcccCCccceeChhhhhhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHH
Q 009538 291 QQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMI 370 (532)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~ 370 (532)
+.+.++..+....+.. ..+.......++.+++.++..++ .+|+++| +.+..+.++..++++
T Consensus 280 ~~~~~~~~~~~g~~~~--------~~~~~~~~~~~~~~~~~~~~g~l----~~r~~~~-------~~~~~~~~~~~~~~~ 340 (438)
T 3o7q_A 280 YLIRYAVEEIPGMTAG--------FAANYLTGTMVCFFIGRFTGTWL----ISRFAPH-------KVLAAYALIAMALCL 340 (438)
T ss_dssp HHHHHHHHHSTTCCHH--------HHHHHHHHHHHHHHHHHHHHHHH----HHHSCHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHhhhccCCcchh--------HHHHHHHHHHHHHHHHHHHHHHH----HHHhcch-------HHHHHHHHHHHHHHH
Confidence 1222201111111111 12233333444445555554443 5555443 566667766666655
Q ss_pred HHHHHHHHHhhhhccCCCcccccCCccccchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHH
Q 009538 371 ISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAIS 450 (532)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig 450 (532)
..... .+. +.+..+++.+++.+...+..+++..|.+|++ ++.+.++.. .+.++
T Consensus 341 ~~~~~------------------------~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g 393 (438)
T 3o7q_A 341 ISAFA------------------------GGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIG 393 (438)
T ss_dssp HHHHC------------------------CHH-HHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHH
T ss_pred HHHHc------------------------CCc-HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHH
Confidence 54432 122 3344557778888888899999999999988 899999887 67799
Q ss_pred HHHHHHHHHHhcccc
Q 009538 451 NYLNGFLISMVHRFT 465 (532)
Q Consensus 451 ~~l~~~~~~~~~~~~ 465 (532)
+.+++.+.+.+.|..
T Consensus 394 ~~~~~~~~g~l~~~~ 408 (438)
T 3o7q_A 394 GGIVTPVMGFVSDAA 408 (438)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998764
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.87 E-value=2.4e-22 Score=205.38 Aligned_cols=137 Identities=12% Similarity=0.080 Sum_probs=122.8
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchh
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 81 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (532)
++.+.+++.+.+.++..++++++|+++||+ |||+++.++..+..++.+++++++ +
T Consensus 33 s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~------------------------~ 87 (375)
T 2gfp_A 33 REGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATLVAVTTS------------------------S 87 (375)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHHHHHHHH------------------------H
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHHHHHhc------------------------c
Confidence 577899999999999999999999999996 999999999999999999999985 5
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhhHHHH
Q 009538 82 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPA 161 (532)
Q Consensus 82 ~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~~ 161 (532)
++.++++|+++|++.+...|...+++.|++|+++ |++.++.+....++|..+||.+++++.++.|||+.|++.+
T Consensus 88 ~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 161 (375)
T 2gfp_A 88 LTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLL 161 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHH
Confidence 7789999999999999999999999999987532 2357999999999999999999999999899999999877
Q ss_pred HHHHHHHH
Q 009538 162 FMMFLSCA 169 (532)
Q Consensus 162 ~~~~l~~~ 169 (532)
+..++..+
T Consensus 162 ~~~~~~~~ 169 (375)
T 2gfp_A 162 VLCAGVTF 169 (375)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 76554443
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.80 E-value=2.6e-20 Score=193.76 Aligned_cols=357 Identities=10% Similarity=0.026 Sum_probs=191.6
Q ss_pred CchhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHH---HHHhhcccCCCCCCCCCCCCCCCCC
Q 009538 1 MKSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVL---SLTAAISKLHPPDCGNQDSGACPGP 77 (532)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~---~~a~~~~~~~~~~~~~~~~~~~~~~ 77 (532)
+|+.+.+++.+.+.++..++++++|+++||+ ||||+++++..+++++...+ +++....
T Consensus 40 ~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~------------------ 100 (417)
T 2cfq_A 40 ISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLVMFAPFFIFIFGPLLQ------------------ 100 (417)
T ss_dssp CCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTSCHHHHHHHTHHHHHH------------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------
Confidence 3677899999999999999999999999996 99999999998887643222 2222100
Q ss_pred CchhHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccccccchhhh
Q 009538 78 TPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGL 157 (532)
Q Consensus 78 ~~~~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~gw~~~F 157 (532)
..++.++++.+++.|...+.......++.++ .+ +.++..++......++|..++|.+++++.+ .+||+.|
T Consensus 101 -----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~---~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f 170 (417)
T 2cfq_A 101 -----YNILVGSIVGGIYLGFCFNAGAPAVEAFIEK-VS---RRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVF 170 (417)
T ss_dssp -----TTCCHHHHGGGSSTTHHHHTTHHHHHHHHHH-HH---HHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-hh---hhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHH
Confidence 0134456666655555444444444443221 01 122344566666778899999999999876 6899999
Q ss_pred HHHHHHHHHHHHHHHhhcceeeecCCCCCchhhHHHHHHHHHHhcccCCCCCCcccccccCCcccccCCCCCCCcccchh
Q 009538 158 GIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLD 237 (532)
Q Consensus 158 ~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (532)
++.++..++..+..+...|+ +++..+ .++.+ + .+ .++.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~----~~~~~~------------------~~~~~----------~---~~---~~~~---- 208 (417)
T 2cfq_A 171 WLGSGCALILAVLLFFAKTD----APSSAT------------------VANAV----------G---AN---HSAF---- 208 (417)
T ss_dssp TTTTTTTTTHHHHSCSSCCC----CSCSSC------------------SSSSS----------S---SC---CCCC----
T ss_pred HHHHHHHHHHHHHHHHcCcc----cccccc------------------ccccc----------c---cc---cccc----
Confidence 98766533332222111111 100000 00000 0 00 0000
Q ss_pred hhcccCCcccccCCCCCCCCCccchhhhhhhhhhhhhhHhH-HHHHHHHHHHhcccchhhhhhhhccCc-ccCCccceeC
Q 009538 238 KAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPI-WASAIVYYVALVQQQTYVVFQALQSDR-RVGNTHFKIP 315 (532)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 315 (532)
+++. ..+..++ +........ +.....+....++.+.++ .. .... ..+ ...
T Consensus 209 -------------------~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~----~~~ 260 (417)
T 2cfq_A 209 -------------------SLKL-ALELFRQ-PKLWFLSLYVIGVSCTYDVFDQQFANFF-TS--FFATGEQG----TRV 260 (417)
T ss_dssp -------------------CHHH-HHHHTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH--TSSSHHHH----THH
T ss_pred -------------------cHHH-HHHHhcC-CchhhHHHHHHHHHHHHHHHHHHHHHHH-HH--HHhccCCC----hhH
Confidence 0000 0000011 111111111 111111111111111111 11 0110 000 000
Q ss_pred hhhhhhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCC
Q 009538 316 AASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRG 395 (532)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (532)
.+.....+.+..+++..+.+++ .||+++| +.+..+..+.+++++..+..
T Consensus 261 ~g~~~~~~~~~~~~~~~~~g~l----~dr~g~~-------~~l~~~~~~~~~~~~~~~~~-------------------- 309 (417)
T 2cfq_A 261 FGYVTTMGELLNASIMFFAPLI----INRIGGK-------NALLLAGTIMSVRIIGSSFA-------------------- 309 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHCHH-------HHHHHHHHHHHHHHHHHTTC--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHhcHH-------HHHHHHHHHHHHHHHHHHHh--------------------
Confidence 1222333333444444443333 5665544 45556666665554443321
Q ss_pred ccccchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHH-HHHHHHHHHHHHHHHHHHhcccccCCCCCCCC
Q 009538 396 AISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSL-AFVGFAISNYLNGFLISMVHRFTKGASTGDWL 474 (532)
Q Consensus 396 ~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl-~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~ 474 (532)
.+.+.++...++.+++.....+..+.++.|.+|++.||++.++ ++..+.+|+.+++.+.|.+.+..
T Consensus 310 ----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~--------- 376 (417)
T 2cfq_A 310 ----TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI--------- 376 (417)
T ss_dssp ----CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS---------
T ss_pred ----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc---------
Confidence 2344555555566666666666778899999999999999999 48888999999999999887632
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009538 475 PEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKW 507 (532)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~ 507 (532)
++...|...+++.+++.+..++..++
T Consensus 377 -------g~~~~f~~~~~~~l~~~~~~~~~~~~ 402 (417)
T 2cfq_A 377 -------GFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred -------CcHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 35567777777777776665544443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.87 E-value=6.8e-09 Score=107.67 Aligned_cols=144 Identities=10% Similarity=0.006 Sum_probs=118.0
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccc--cchHHHHHHHHHHH-HHHHHHHHHhhcccCCCCCCCCCCCCCCCCCC
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYF--GRYKTLGFASVASF-LGMLVLSLTAAISKLHPPDCGNQDSGACPGPT 78 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~--Grr~~l~~~~~~~~-ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~ 78 (532)
++.+.+++.+.+.++..++.+++|+++|| + |||+.+.++..+.. ++.++..+..+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 343 (451)
T 1pw4_A 286 ALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTLVTIATIVYWMNPA--------------------- 343 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHHHHHHHHHTTSCCT---------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHHHHHHHHHHHHhcc---------------------
Confidence 56778899999999999999999999999 8 99999988877776 55555544321
Q ss_pred chhHHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhH-HHHHHHHhhhhccccccchhhh
Q 009538 79 PWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTF-AMMISLTVIVYVQSDVSWAWGL 157 (532)
Q Consensus 79 ~~~~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~-G~~~g~~~~g~i~~~~gw~~~F 157 (532)
.+...+++..++.|++.+...+....++.|.+|+ +.+++.++++....++ |..++|.+.|++.+..||++.|
T Consensus 344 -~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~ 416 (451)
T 1pw4_A 344 -GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPK------KAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGF 416 (451)
T ss_dssp -TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT------THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHH
T ss_pred -cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhch------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 2466778888899999999888888999998874 2346789999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 009538 158 GIPAFMMFLSCAMFFLG 174 (532)
Q Consensus 158 ~v~~~~~~l~~~~~~~~ 174 (532)
++.++..+++.+..+..
T Consensus 417 ~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 417 MVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99888776666555443
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.82 E-value=3e-09 Score=109.98 Aligned_cols=137 Identities=7% Similarity=0.010 Sum_probs=105.2
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhHHHH
Q 009538 6 ATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFL 85 (532)
Q Consensus 6 ~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (532)
.+.+.+...++..++.+++|+++||+ |||+++..+..+.+++.++.++++ +...+
T Consensus 261 ~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~~~~~~~~~~~~------------------------~~~~~ 315 (417)
T 2cfq_A 261 FGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFAT------------------------SALEV 315 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHTTCC------------------------SHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHhc------------------------cHHHH
Confidence 35555566667778899999999995 999999998888888766665542 34567
Q ss_pred HHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhh-hHHHHhHHHHHHHHhhhhccccccchhhhHHHHHHH
Q 009538 86 FTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNW-YYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMM 164 (532)
Q Consensus 86 ~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~-~~~~~~~G~~~g~~~~g~i~~~~gw~~~F~v~~~~~ 164 (532)
++..++.+++.+...+....++.|.+|+ +.|++..+. +.....+|..+||.++|++.++.|++..|.+.++..
T Consensus 316 ~~~~~l~~~~~~~~~~~~~~~~~~~~p~------~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~ 389 (417)
T 2cfq_A 316 VILKTLHMFEVPFLLVGCFKYITSQFEV------RFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVA 389 (417)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHSCH------HHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCH------HHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHH
Confidence 7777788888777777778899998874 334556666 466778999999999999988889999999887776
Q ss_pred HHHHHHHHh
Q 009538 165 FLSCAMFFL 173 (532)
Q Consensus 165 ~l~~~~~~~ 173 (532)
+++.++.+.
T Consensus 390 l~~~~~~~~ 398 (417)
T 2cfq_A 390 LGFTLISVF 398 (417)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHh
Confidence 666655443
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.74 E-value=4.1e-08 Score=101.37 Aligned_cols=134 Identities=12% Similarity=0.048 Sum_probs=106.8
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchh
Q 009538 2 KSITATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQ 81 (532)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (532)
+..+++++.+.+.++..++.+++|+++||+ |||+++.++.++..++.++..+.+ +
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~------------------------~ 347 (438)
T 3o7q_A 293 TAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMALCLISAFAG------------------------G 347 (438)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHCC------------------------H
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHcC------------------------C
Confidence 567788999999999999999999999995 999999999999999988887764 2
Q ss_pred HHHHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhcccccc-chhhhHHH
Q 009538 82 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVS-WAWGLGIP 160 (532)
Q Consensus 82 ~~~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~~~g-w~~~F~v~ 160 (532)
... ++.-++.|++.+...|...++..|.+|++ + +...++.. ...+|..++|.+.|++.+..| ++..|++.
T Consensus 348 ~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~ 418 (438)
T 3o7q_A 348 HVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD--T-----KYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIP 418 (438)
T ss_dssp HHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG--H-----HHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHH
T ss_pred cHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc--c-----cchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 223 33448889999999999999989988742 1 22344433 667999999999999999888 99999987
Q ss_pred HHHHHHHHH
Q 009538 161 AFMMFLSCA 169 (532)
Q Consensus 161 ~~~~~l~~~ 169 (532)
++..++..+
T Consensus 419 ~~~~~~~~~ 427 (438)
T 3o7q_A 419 ALCFAVIFI 427 (438)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 665444433
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.53 E-value=9.9e-07 Score=92.58 Aligned_cols=139 Identities=13% Similarity=0.132 Sum_probs=103.3
Q ss_pred hhhhhhhhhhHhHHhhhccchhhhccc-cccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCc
Q 009538 318 SYAIFSMLGLTIWIPIYDRIIVPRLQR-LTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 396 (532)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (532)
.......++..++.++.+++ .|| +++| +.+..+.++.+++.++....
T Consensus 58 ~~~~~~~~~~~~~~~~~g~l----~dr~~g~r-------~~~~~~~~~~~~~~~~~~~~--------------------- 105 (491)
T 4aps_A 58 SIMAIYASMVYLSGTIGGFV----ADRIIGAR-------PAVFWGGVLIMLGHIVLALP--------------------- 105 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHTSCHH-------HHHHHHHHHHHHHHHHHHSC---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH----Hhccccch-------HHHHHHHHHHHHHHHHHHHh---------------------
Confidence 44455556666666665554 777 5665 67777888877777665532
Q ss_pred cccchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchh--HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCC
Q 009538 397 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENM--RSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWL 474 (532)
Q Consensus 397 ~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~--rg~~~gl~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~ 474 (532)
.+.+.++...++.|++.+...+...+++.|.+|++. |+.+.++.+....+|..+++.+.+.+.+..
T Consensus 106 ---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~--------- 173 (491)
T 4aps_A 106 ---FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA--------- 173 (491)
T ss_dssp ---CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---------
T ss_pred ---hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh---------
Confidence 356777788889999999999999999999999988 888888899999999999999999987632
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009538 475 PEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKW 507 (532)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~ 507 (532)
++.+.|++.++..+++.+.+++..++
T Consensus 174 -------g~~~~f~~~~~~~~~~~~~~~~~~~~ 199 (491)
T 4aps_A 174 -------GYHVAFSLAAIGMFIGLLVYYFGGKK 199 (491)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -------hHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 24567777666666666655554443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.50 E-value=9.6e-07 Score=92.62 Aligned_cols=146 Identities=12% Similarity=-0.002 Sum_probs=100.1
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCchhHH-
Q 009538 5 TATTLINIFSGTTNFATLLGAFLSDTYFGRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLA- 83 (532)
Q Consensus 5 ~~~~i~~~~~~~~~~~~l~~G~laD~~~Grr~~l~~~~~~~~ig~il~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 83 (532)
..........+...++.++++++.||+ |||+.++.+.....++.+..+...... ..+..
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~~ 372 (491)
T 4gc0_A 313 IALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFYTQ-------------------APGIVA 372 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHHHHHHHHHHTT-------------------CCHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHHHHHHHHHHhcc-------------------cchHHH
Confidence 334445556677788999999999996 999999999999998887776653211 01222
Q ss_pred HHHHHHHHHHHhccccccccccccccCCCCCCCCcccchhhhhhhhHHHHhHHHHHHHHhhhhccc------cccchhhh
Q 009538 84 FLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQS------DVSWAWGL 157 (532)
Q Consensus 84 ~l~~~r~l~G~g~g~~~p~~~~~i~d~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~g~i~~------~~gw~~~F 157 (532)
.+.+.-+..+++. ...|....+.+|.||. +.|++..++.....++|.++++.+.+.+.+ ..++.+.|
T Consensus 373 ~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt------~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~ 445 (491)
T 4gc0_A 373 LLSMLFYVAAFAM-SWGPVCWVLLSEIFPN------AIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSY 445 (491)
T ss_dssp HHHHHHHHHHHHT-TTTHHHHHHHHHSSCT------TTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHh-HHHHHHHHHHHHhCCH------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 2222222333333 3456777899999985 344678888888889999998888776643 34566778
Q ss_pred HHHHHHHHHHHHHHHhhcce
Q 009538 158 GIPAFMMFLSCAMFFLGSRL 177 (532)
Q Consensus 158 ~v~~~~~~l~~~~~~~~~~~ 177 (532)
++.+++.++..++.++..|+
T Consensus 446 ~i~~~~~~~~~i~~~~~~PE 465 (491)
T 4gc0_A 446 WIYGCMGVLAALFMWKFVPE 465 (491)
T ss_dssp HHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHheecC
Confidence 88777777776666666665
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.37 E-value=8.8e-07 Score=89.46 Aligned_cols=111 Identities=14% Similarity=0.166 Sum_probs=87.2
Q ss_pred hhhhhhhhhhHhHHhhhccchhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCcc
Q 009538 318 SYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAI 397 (532)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (532)
.......++..++.++.+++ .||+++| +.+..+..+.+++.+.....
T Consensus 39 ~~~~~~~~~~~~~~~~~g~l----~dr~g~r-------~~~~~~~~~~~~~~~~~~~~---------------------- 85 (375)
T 2gfp_A 39 SVMGAYLLTYGVSQLFYGPI----SDRVGRR-------PVILVGMSIFMLATLVAVTT---------------------- 85 (375)
T ss_dssp HHHHHHHHHHHHHHTTHHHH----HTTSCCC-------CCCHHHHHHHHHHHHHHHHH----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHhCCc-------hhHHHHHHHHHHHHHHHHHh----------------------
Confidence 34455555666666665554 7777766 34556777777776666654
Q ss_pred ccchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 009538 398 SSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR 463 (532)
Q Consensus 398 ~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l~~~~~~~~~~ 463 (532)
.+.+.++...++.|++.+...+....++.|.+|++.|++++++.+....+|..+++.+.+.+.+
T Consensus 86 --~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~ 149 (375)
T 2gfp_A 86 --SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT 149 (375)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred --ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 2567777788899999999999999999999999999999999999999999999999998865
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.29 E-value=5.7e-06 Score=87.55 Aligned_cols=136 Identities=13% Similarity=0.105 Sum_probs=96.4
Q ss_pred hhhhhhhhhhHhHHhhhccchhhhcccc-ccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccccCCc
Q 009538 318 SYAIFSMLGLTIWIPIYDRIIVPRLQRL-TKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 396 (532)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (532)
.......++..++.++.+++ .||+ ++| +.+.++.++.+++.++....
T Consensus 58 ~~~~~~~~~~~~~~~~~G~l----~dr~~g~r-------~~~~~~~~~~~~~~~~~~~~--------------------- 105 (524)
T 2xut_A 58 DVFHSFVIGVYFFPLLGGWI----ADRFFGKY-------NTILWLSLIYCVGHAFLAIF--------------------- 105 (524)
T ss_dssp HHHHHHHHHHHHTHHHHHHH----HTTSSCSH-------HHHHHHHHHHHHHHHHHHHT---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHhcch-------HHHHHHHHHHHHHHHHHHHh---------------------
Confidence 34444555556666664444 6665 544 56777887777777666543
Q ss_pred cccchHHHHHHHHHHHHHHhHhhhhhhhhhhhcccCchhHHHHHHH---HHHHHHHHHHHHHHHHHHhcccccCCCCCCC
Q 009538 397 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSL---AFVGFAISNYLNGFLISMVHRFTKGASTGDW 473 (532)
Q Consensus 397 ~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~~~~P~~~rg~~~gl---~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~ 473 (532)
+.+.+.++...++.|++.+...+...+++.|.+|++.|++..+. .+....+|..+++.+.+.+.+..
T Consensus 106 --~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-------- 175 (524)
T 2xut_A 106 --EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF-------- 175 (524)
T ss_dssp --SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS--------
T ss_pred --cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------
Confidence 12567777788899999999999999999999999999876666 88888999999998888876532
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 009538 474 LPEDLNKGRLDYFYYLVAALGLLNFGFFLL 503 (532)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~ 503 (532)
++.+.|++.+++.++..+..+.
T Consensus 176 --------g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 176 --------GAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHS
T ss_pred --------cHHHHHHHHHHHHHHHHHHHHH
Confidence 2456677666666555554443
No 15
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=24.17 E-value=1.2e+02 Score=26.84 Aligned_cols=25 Identities=12% Similarity=0.008 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhHHHHHhhccccch
Q 009538 10 INIFSGTTNFATLLGAFLSDTYFGRY 35 (532)
Q Consensus 10 ~~~~~~~~~~~~l~~G~laD~~~Grr 35 (532)
+.-|.++..+++.+.|+++||. .++
T Consensus 99 TgGYLiGF~~aA~v~G~l~~~~-~~~ 123 (198)
T 4dve_A 99 SGGYRIAWLFTPFLIGFFLKKL-KIT 123 (198)
T ss_dssp THHHHHHHHHHHHHHHHHHHHT-TGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHc-ccc
Confidence 3568889999999999999995 543
Done!