BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009539
(532 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 76/136 (55%), Gaps = 8/136 (5%)
Query: 255 ILHVKVVKAMNLKKKDLLGASDPYVKLKI----TEDKLPSKKTTVKHKNLNPEWNEEYNF 310
IL VKVV ++L KKD+ GASDPYVKL + +L +T K LNP+WNEE+ F
Sbjct: 22 ILRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYF 81
Query: 311 TVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNE 370
V +P + + V+D ++ + D +G VPL L E+P+++ K+ L ++
Sbjct: 82 RV-NPSNHRLLFEVFDENRLTRDDFLGQVDVPLSHLPTEDPTMERPYTFKDFLLRP-RSH 139
Query: 371 KSR--GQLVVEFIYKP 384
KSR G L ++ Y P
Sbjct: 140 KSRVKGFLRLKMAYMP 155
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 13/79 (16%)
Query: 430 TNPYARI-LFRGEERK------TKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSS 482
++PY ++ L+ +E + TK +KK +P+W EEF F + P+N RL EV +
Sbjct: 42 SDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYFRVN--PSNHRLLFEVFDENR 99
Query: 483 RIGLLHPKETLGYIDINLS 501
L + LG +D+ LS
Sbjct: 100 ----LTRDDFLGQVDVPLS 114
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 84/160 (52%), Gaps = 14/160 (8%)
Query: 255 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK---LPSKKTTVKHKNLNPEWNEEYNFT 311
++ VKV+ + L KKD+LGASDPYV++ + + L S +T K+LNP+WNEE F
Sbjct: 9 VVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFR 68
Query: 312 VRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEK 371
V P+ + V+D ++ + D +G VPL L E P ++ K+ L+ ++ K
Sbjct: 69 VL-PQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLH-PRSHK 126
Query: 372 SR--GQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPA 409
SR G L ++ Y LPK+ E + +A E P
Sbjct: 127 SRVKGYLRLKMTY-------LPKNGSEDENADQAEELEPG 159
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 72/134 (53%), Gaps = 5/134 (3%)
Query: 255 ILHVKVVKAMNLKKKDLLGASDPYVKLKITE---DKLPSKKTTVKHKNLNPEWNEEYNFT 311
I+ V+V+ + L KKD+LGASDPYV++ + + L S +T K+LNP+WNEE F
Sbjct: 21 IVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFR 80
Query: 312 VRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLN-DGQNE 370
V P+ + V+D ++ + D +G VPL L E P ++ K+ L+
Sbjct: 81 VH-PQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKS 139
Query: 371 KSRGQLVVEFIYKP 384
+ +G L ++ Y P
Sbjct: 140 RVKGYLRLKMTYLP 153
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 21/116 (18%)
Query: 409 AGGGLLVVIVHEAQDVEGKHHTNPYARILFRG------EERKTKHVKKNRDPRWEEEFQF 462
AG GL +D+ G ++PY R+ +TK +KK+ +P+W EE F
Sbjct: 28 AGIGL------AKKDILGA--SDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILF 79
Query: 463 MLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDV-VSNKRINEKYHLID 517
+ P RL EV + L + LG +D+ L + N R+ Y D
Sbjct: 80 RVH--PQQHRLLFEVFDENR----LTRDDFLGQVDVPLYPLPTENPRLERPYTFKD 129
>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human
Mctp2 Protein
Length = 133
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 66/119 (55%), Gaps = 7/119 (5%)
Query: 246 SKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWN 305
S + VGIL VKV+KA +L D G SDP+ L++ D+L +T +KNLNPEWN
Sbjct: 5 SSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRL---QTHTVYKNLNPEWN 61
Query: 306 EEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDL 364
+ + F ++D +E+ V+D + D +G +PL + +P+ +LKN DL
Sbjct: 62 KVFTFPIKDIH-DVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCY---VLKNKDL 116
>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin
pdb|3HN8|B Chain B, Crystal Structure Of Synaptotagmin
pdb|3HN8|C Chain C, Crystal Structure Of Synaptotagmin
Length = 296
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 102/222 (45%), Gaps = 48/222 (21%)
Query: 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 315
L V++++A++L KD G SDPYVK+ + D+ +T V K LNP +NE + F+V
Sbjct: 23 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 82
Query: 316 E--SQAVELAVYDWEQVGKHDKMGM----NVVPLKELTPEEPSVKTLDLLKNMDLNDGQN 369
E + + +VYD+++ +HD +G N++ L E P+ P + D+ +G +
Sbjct: 83 ELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWR--------DILEGGS 134
Query: 370 EKSR-GQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGKH 428
EK+ G+L Y P GLL V + +A +++
Sbjct: 135 EKADLGELNFSLCYLP-------------------------TAGLLTVTIIKASNLKAMD 169
Query: 429 HT---NPYARILFRGEERKTK----HVKKNR-DPRWEEEFQF 462
T +PY + E R+ K +KKN +P + E F
Sbjct: 170 LTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVF 211
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 58/100 (58%), Gaps = 4/100 (4%)
Query: 243 LDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNL 300
L+ S Y G+L V ++KA NLK DL G SDPYVK + + +L +KT++K L
Sbjct: 142 LNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTL 201
Query: 301 NPEWNEEYNFTV--RDPESQAVELAVYDWEQVGKHDKMGM 338
NP +NE F V E+ + +AV D++ +G ++ +G+
Sbjct: 202 NPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGV 241
>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
Length = 296
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 102/222 (45%), Gaps = 48/222 (21%)
Query: 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 315
L V++++A++L KD G SDPYVK+ + D+ +T V K LNP +NE + F+V
Sbjct: 22 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 81
Query: 316 E--SQAVELAVYDWEQVGKHDKMGM----NVVPLKELTPEEPSVKTLDLLKNMDLNDGQN 369
E + + +VYD+++ +HD +G N++ L E P+ P + D+ +G +
Sbjct: 82 ELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWR--------DILEGGS 133
Query: 370 EKSR-GQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGKH 428
EK+ G+L Y P GLL V + +A +++
Sbjct: 134 EKADLGELNFSLCYLP-------------------------TAGLLTVTIIKASNLKAMD 168
Query: 429 HT---NPYARILFRGEERKTK----HVKKNR-DPRWEEEFQF 462
T +PY + E R+ K +KKN +P + E F
Sbjct: 169 LTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVF 210
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 58/100 (58%), Gaps = 4/100 (4%)
Query: 243 LDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNL 300
L+ S Y G+L V ++KA NLK DL G SDPYVK + + +L +KT++K L
Sbjct: 141 LNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTL 200
Query: 301 NPEWNEEYNFTV--RDPESQAVELAVYDWEQVGKHDKMGM 338
NP +NE F V E+ + +AV D++ +G ++ +G+
Sbjct: 201 NPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGV 240
>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Vii
Length = 141
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 59/122 (48%), Gaps = 15/122 (12%)
Query: 246 SKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWN 305
S Y L VK++KA L KD G SDP+VK+ + DK +T VK KNLNP WN
Sbjct: 18 SVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWN 77
Query: 306 EEY---NFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPL------------KELTPEE 350
E + F + + L V D+++ ++D +G +PL K+L P
Sbjct: 78 ETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPSG 137
Query: 351 PS 352
PS
Sbjct: 138 PS 139
>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A
Novel Ca2+(slash)phospholipid Binding Fold
Length = 152
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 7/101 (6%)
Query: 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 315
L V +++A L D+ G SDPYVK+ + DK +T V K LNP +NE++ F V
Sbjct: 44 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 103
Query: 316 E--SQAVELAVYDWEQVGKHDKMG-----MNVVPLKELTPE 349
E + + +AVYD+++ KHD +G MN V +T E
Sbjct: 104 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEE 144
>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain
pdb|3F01|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
pdb|3F05|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Mn(Ii)
Length = 143
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 7/101 (6%)
Query: 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 315
L V +++A L D+ G SDPYVK+ + DK +T V K LNP +NE++ F V
Sbjct: 36 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 316 E--SQAVELAVYDWEQVGKHDKMG-----MNVVPLKELTPE 349
E + + +AVYD+++ KHD +G MN V +T E
Sbjct: 96 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEE 136
>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
Length = 143
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 7/101 (6%)
Query: 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 315
L V +++A L D+ G SDPYVK+ + DK +T V K LNP +NE++ F V
Sbjct: 36 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 316 E--SQAVELAVYDWEQVGKHDKMG-----MNVVPLKELTPE 349
E + + +AVYD+++ KHD +G MN V +T E
Sbjct: 96 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEE 136
>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of
Synaptotagmin I
pdb|2K8M|A Chain A, S100a13-C2a Binary Complex Structure
pdb|2K8M|D Chain D, S100a13-C2a Binary Complex Structure
pdb|2K45|A Chain A, C2a Domain Of Synaptototagmin I Solution Structure In The
Fgf-1-C2a Binary Complex: Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2K4A|A Chain A, Fgf-1-C2a Binary Complex Structure: A Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2KI6|A Chain A, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
pdb|2KI6|F Chain F, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
Length = 128
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 7/101 (6%)
Query: 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 315
L V +++A L D+ G SDPYVK+ + DK +T V K LNP +NE++ F V
Sbjct: 19 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 78
Query: 316 E--SQAVELAVYDWEQVGKHDKMG-----MNVVPLKELTPE 349
E + + +AVYD+++ KHD +G MN V +T E
Sbjct: 79 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEE 119
>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
Length = 284
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 7/101 (6%)
Query: 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 315
L V +++A L D+ G SDPYVK+ + DK +T V K LNP +NE++ F V
Sbjct: 21 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 80
Query: 316 E--SQAVELAVYDWEQVGKHDKMG-----MNVVPLKELTPE 349
E + + +AVYD+++ KHD +G MN V +T E
Sbjct: 81 ELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEE 121
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 61/96 (63%), Gaps = 4/96 (4%)
Query: 246 SKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPE 303
S Y G L V +++A NLKK D+ G SDPYVK+ + ++ +L KKTT+K LNP
Sbjct: 142 SLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPY 201
Query: 304 WNEEYNFTVRDPESQAVE--LAVYDWEQVGKHDKMG 337
+NE ++F V + Q V+ + V D++++GK+D +G
Sbjct: 202 YNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIG 237
>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|B Chain B, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|C Chain C, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma
Length = 144
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVR 313
+HV V +A NL D G SDPYVKLK+ D L +KT LNP WNE + F ++
Sbjct: 22 IHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFNLK 81
Query: 314 DPE-SQAVELAVYDWEQVGKHDKMGMNVVPLKEL 346
+ + + + V+DW++ ++D MG + EL
Sbjct: 82 PGDVERRLSVEVWDWDRTSRNDFMGAMSFGVSEL 115
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITED-KLPSK-KTTVKHKNLNPEWNEEYNFTVR 313
LHV V A NL D G SDPYVKLK+ D K SK KT LNP+WNE + F ++
Sbjct: 18 LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 77
Query: 314 -DPESQAVELAVYDWEQVGKHDKMGMNVVPLKEL 346
+ + + + ++DW++ ++D MG + EL
Sbjct: 78 PSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSEL 111
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 414 LVVIVHEAQDV---EGKHHTNPYARILF-----RGEERKTKHVKKNRDPRWEEEFQFMLE 465
L V V +A+++ + ++PY ++ ++KTK ++ +P+W E F F L+
Sbjct: 18 LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 77
Query: 466 EPPTNDRLHVEV 477
+ RL VE+
Sbjct: 78 PSDKDRRLSVEI 89
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
Ca2+ And Phosphatidylserine
Length = 139
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITED-KLPSK-KTTVKHKNLNPEWNEEYNFTVR 313
LHV V A NL D G SDPYVKLK+ D K SK KT LNP+WNE + F ++
Sbjct: 19 LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 78
Query: 314 -DPESQAVELAVYDWEQVGKHDKMGMNVVPLKEL 346
+ + + + ++DW++ ++D MG + EL
Sbjct: 79 PSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSEL 112
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 442 ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEV 477
++KTK ++ +P+W E F F L+ + RL VE+
Sbjct: 55 KQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEI 90
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Query: 255 ILHVKVVKAMNLKKKDLLGASDPYVKLKITED-KLPSK-KTTVKHKNLNPEWNEEYNFTV 312
+L V V A NL D G SDPYVKLK+ D K SK KT +LNPEWNE + F +
Sbjct: 173 VLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQL 232
Query: 313 RDPE-SQAVELAVYDWEQVGKHDKMGMNVVPLKEL 346
++ + + + + ++DW+ ++D MG + EL
Sbjct: 233 KESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISEL 267
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 42/73 (57%), Gaps = 8/73 (10%)
Query: 413 LLVVIVHEAQDV---EGKHHTNPYARILF-----RGEERKTKHVKKNRDPRWEEEFQFML 464
+L+V+V +A+++ + ++PY ++ ++KTK +K + +P W E F+F L
Sbjct: 173 VLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQL 232
Query: 465 EEPPTNDRLHVEV 477
+E + RL VE+
Sbjct: 233 KESDKDRRLSVEI 245
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 3/95 (3%)
Query: 255 ILHVKVVKAMNLKKKDLLGASDPYVKLKITED-KLPSKKTTVKHK-NLNPEWNEEYNFTV 312
+L V V A NL D G SDPYVKLK+ D K SK+ T K +LNPEWNE + F +
Sbjct: 32 VLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQL 91
Query: 313 RDPE-SQAVELAVYDWEQVGKHDKMGMNVVPLKEL 346
++ + + + + ++DW+ ++D MG + EL
Sbjct: 92 KESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISEL 126
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 42/73 (57%), Gaps = 8/73 (10%)
Query: 413 LLVVIVHEAQDV---EGKHHTNPYARILF-----RGEERKTKHVKKNRDPRWEEEFQFML 464
+L+V+V +A+++ + ++PY ++ ++KTK +K + +P W E F+F L
Sbjct: 32 VLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQL 91
Query: 465 EEPPTNDRLHVEV 477
+E + RL VE+
Sbjct: 92 KESDKDRRLSVEI 104
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITED-KLPSK-KTTVKHKNLNPEWNEEYNFTVR 313
LHV V A NL D G SDPYVKLK+ D K SK KT LNP+WNE + F ++
Sbjct: 20 LHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 79
Query: 314 -DPESQAVELAVYDWEQVGKHDKMGMNVVPLKEL 346
+ + + + ++DW++ ++D G + EL
Sbjct: 80 PSDKDRRLSVEIWDWDRTTRNDFXGSLSFGVSEL 113
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 442 ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEV 477
++KTK ++ +P+W E F F L+ + RL VE+
Sbjct: 56 KQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEI 91
>pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin
Length = 166
Score = 55.8 bits (133), Expect = 6e-08, Method: Composition-based stats.
Identities = 32/96 (33%), Positives = 56/96 (58%), Gaps = 4/96 (4%)
Query: 246 SKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPE 303
S Y G L V +++ ++L D G SDP+VKL + D K KT +K K LNPE
Sbjct: 29 SLXYSTQQGGLIVGIIRCVHLAAXDANGYSDPFVKLWLKPDXGKKAKHKTQIKKKTLNPE 88
Query: 304 WNEEYNFTVR--DPESQAVELAVYDWEQVGKHDKMG 337
+NEE+ + ++ D ++++++V+D++ +D +G
Sbjct: 89 FNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIG 124
>pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a
pdb|2CM6|B Chain B, Crystal Structure Of The C2b Domain Of Rabphilin3a
Length = 166
Score = 55.5 bits (132), Expect = 8e-08, Method: Composition-based stats.
Identities = 32/96 (33%), Positives = 56/96 (58%), Gaps = 4/96 (4%)
Query: 246 SKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPE 303
S Y G L V +++ ++L D G SDP+VKL + D K KT +K K LNPE
Sbjct: 29 SLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPE 88
Query: 304 WNEEYNFTVR--DPESQAVELAVYDWEQVGKHDKMG 337
+NEE+ + ++ D ++++++V+D++ +D +G
Sbjct: 89 FNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIG 124
>pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A
Janus-Faced Domain
Length = 140
Score = 55.1 bits (131), Expect = 9e-08, Method: Composition-based stats.
Identities = 32/96 (33%), Positives = 56/96 (58%), Gaps = 4/96 (4%)
Query: 246 SKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPE 303
S Y G L V +++ ++L D G SDP+VKL + D K KT +K K LNPE
Sbjct: 7 SLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPE 66
Query: 304 WNEEYNFTVR--DPESQAVELAVYDWEQVGKHDKMG 337
+NEE+ + ++ D ++++++V+D++ +D +G
Sbjct: 67 FNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIG 102
>pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination Site
In Synaptotagmin I C2b Domain
pdb|1UOV|A Chain A, Calcium Binding Domain C2b
pdb|1UOW|A Chain A, Calcium Binding Domain C2b
pdb|1TJX|A Chain A, Crystallographic Identification Of Ca2+ Coordination Sites
In Synaptotagmin I C2b Domain
Length = 159
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 61/96 (63%), Gaps = 4/96 (4%)
Query: 246 SKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPE 303
S Y G L V +++A NLKK D+ G SDPYVK+ + ++ +L KKTT+K LNP
Sbjct: 17 SLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPY 76
Query: 304 WNEEYNFTVRDPESQAVE--LAVYDWEQVGKHDKMG 337
+NE ++F V + Q V+ + V D++++GK+D +G
Sbjct: 77 YNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIG 112
>pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6
Length = 151
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 61/96 (63%), Gaps = 4/96 (4%)
Query: 246 SKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPE 303
S Y G L V +++A NLKK D+ G SDPYVK+ + ++ +L KKTT+K LNP
Sbjct: 9 SLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPY 68
Query: 304 WNEEYNFTVRDPESQAVE--LAVYDWEQVGKHDKMG 337
+NE ++F V + Q V+ + V D++++GK+D +G
Sbjct: 69 YNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIG 104
>pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b-
Domain: Synaptotagmin 1 As A Phospholipid Binding
Machine
Length = 152
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 61/96 (63%), Gaps = 4/96 (4%)
Query: 246 SKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPE 303
S Y G L V +++A NLKK D+ G SDPYVK+ + ++ +L KKTT+K LNP
Sbjct: 10 SLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPY 69
Query: 304 WNEEYNFTVRDPESQAVE--LAVYDWEQVGKHDKMG 337
+NE ++F V + Q V+ + V D++++GK+D +G
Sbjct: 70 YNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIG 105
>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor-
Responsive Gene
Length = 136
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 65/134 (48%), Gaps = 12/134 (8%)
Query: 252 PVGILHVKVVKAMNLKKKDLLGASDPYVKLKI-TEDKLPSKKTTVKHKNLNPEWNEEYNF 310
P G L V +V A L+ D L DPYV+L T+D+ K + PEWNE + F
Sbjct: 8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQ---KSNVAEGMGTTPEWNETFIF 64
Query: 311 TVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNE 370
TV + ++ ++ ++D + + D +G +PL+ + E T N ++E
Sbjct: 65 TVSEGTTE-LKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTA-------YNVVKDE 116
Query: 371 KSRGQLVVEFIYKP 384
+ +G++ V +KP
Sbjct: 117 EYKGEIWVALSFKP 130
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 3/100 (3%)
Query: 253 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTV 312
+G L V V++A LK G S+PY ++ + S T LNP+WN F +
Sbjct: 386 IGRLMVHVIEATELKACKPNGKSNPYCEISMGSQ---SYTTRTIQDTLNPKWNFNCQFFI 442
Query: 313 RDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPS 352
+D + L ++D +Q D +G +P+ ++ E+ S
Sbjct: 443 KDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQES 482
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 402 KAPENTPAGGGLLVVIVHEAQDVEG---KHHTNPYARILFRGEERKTKHVKKNRDPRWEE 458
+A +G G L+V V EA +++ +NPY I + T+ ++ +P+W
Sbjct: 377 QARSQKTSGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNF 436
Query: 459 EFQFMLEE 466
QF +++
Sbjct: 437 NCQFFIKD 444
>pdb|3PYC|A Chain A, Crystal Structure Of Human Smurf1 C2 Domain
Length = 132
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 14/131 (10%)
Query: 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 315
+ + V+ A NL KKD DP+ K+ + TVK+ L+P+WN+ Y+ V
Sbjct: 7 IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKN-TLDPKWNQHYDLYVGKT 65
Query: 316 ESQAVELAVYDWEQVGKHDKMGMNVVPLKELTP------EEPSVKTLDLLKNMDLNDGQN 369
+S + + W H K G + L ++ + LDL K LN
Sbjct: 66 DSITISV----WNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCK---LNPSDT 118
Query: 370 EKSRGQLVVEF 380
+ RGQ+VV
Sbjct: 119 DAVRGQIVVSL 129
>pdb|1W15|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Presence Of Calcium
pdb|1W16|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Absence Of Calcium
Length = 153
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
Query: 246 SKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKI--TEDKLPSKKTTVKHKNLNPE 303
S Y+ L V V+KA +L K D+ G SDPYVK+ + + ++ KKT VK N
Sbjct: 22 SLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAV 81
Query: 304 WNEEYNFTV--RDPESQAVELAVYDWEQVGKHDKMGMNVV 341
+NE + F + E +VE V D E+ +++ +G V+
Sbjct: 82 FNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVL 121
>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
Length = 148
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 21/119 (17%)
Query: 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 315
+ + VV A L+ KD G+SDPYV +++ + K K+T + NLNP W E ++F +
Sbjct: 19 ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTK---KRTKTIYGNLNPVWEENFHFECHN- 74
Query: 316 ESQAVELAVYDWEQVGKH-----------DKMGMNVVPLKELTPEEPSVKTLDLLKNMD 363
S +++ V D + K D +G ++ ++ L+ E +D+ N+D
Sbjct: 75 SSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGE------MDVWYNLD 127
Score = 35.8 bits (81), Expect = 0.065, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Query: 394 FEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRD 453
F Q+V A + VV Q + ++PY + +++TK + N +
Sbjct: 2 FAVKQSVLDGTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLN 61
Query: 454 PRWEEEFQFMLEEPPTNDRLHVEV 477
P WEE F F E ++DR+ V V
Sbjct: 62 PVWEENFHF--ECHNSSDRIKVRV 83
>pdb|2JQZ|A Chain A, Solution Structure Of The C2 Domain Of Human Smurf2
Length = 131
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 14/131 (10%)
Query: 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 315
L + V+ A NL KKD DP+ K+ + TVK+ L+P+WN+ Y+ +
Sbjct: 5 LRLTVLCAKNLVKKDFFRLPDPFAKVVVDGSGQCHSTDTVKN-TLDPKWNQHYDLYI--G 61
Query: 316 ESQAVELAVYDWEQVGKHDKMGMNVVPLKELTP------EEPSVKTLDLLKNMDLNDGQN 369
+S +V ++V++ +++ H K G + L ++ + LDL K L N
Sbjct: 62 KSDSVTISVWNHKKI--HKKQGAGFLGCVRLLSNAINRLKDTGYQRLDLCK---LGPNDN 116
Query: 370 EKSRGQLVVEF 380
+ RGQ+VV
Sbjct: 117 DTVRGQIVVSL 127
>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a
Length = 142
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 13/131 (9%)
Query: 229 ANMYLWPKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKL 288
AN Y + + L+ S Y + L +++A LK D G +DPYVKL + L
Sbjct: 4 ANSYDSDQATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHL----L 59
Query: 289 P--SKKTTVKHKNL----NPEWNEEYNF---TVRDPESQAVELAVYDWEQVGKHDKMGMN 339
P SK ++ K L NP WNE + T D + + + ++V D ++ G ++ +G
Sbjct: 60 PGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGET 119
Query: 340 VVPLKELTPEE 350
LK+L +
Sbjct: 120 RFSLKKLKANQ 130
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 11/87 (12%)
Query: 431 NPYARI-LFRGEER----KTKHVKKNRDPRWEEEFQF--MLEEPPTNDRLHVEVCSVSSR 483
+PY ++ L G + +TK ++ R+P W E Q+ + EE L + VC +
Sbjct: 51 DPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCD-EDK 109
Query: 484 IGLLHPKETLGYIDINLSDVVSNKRIN 510
G E +G +L + +N+R N
Sbjct: 110 FG---HNEFIGETRFSLKKLKANQRKN 133
>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The
C2a Domain Of Rabphilin-3a
Length = 140
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 13/131 (9%)
Query: 229 ANMYLWPKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKL 288
AN Y + + L+ S Y + L +++A LK D G +DPYVKL + L
Sbjct: 2 ANSYDSDEATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHL----L 57
Query: 289 P--SKKTTVKHKNL----NPEWNEEYNF---TVRDPESQAVELAVYDWEQVGKHDKMGMN 339
P SK ++ K L NP WNE + T D + + + ++V D ++ G ++ +G
Sbjct: 58 PGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGET 117
Query: 340 VVPLKELTPEE 350
LK+L +
Sbjct: 118 RFSLKKLKANQ 128
Score = 30.4 bits (67), Expect = 2.6, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 11/87 (12%)
Query: 431 NPYARI-LFRGEER----KTKHVKKNRDPRWEEEFQF--MLEEPPTNDRLHVEVCSVSSR 483
+PY ++ L G + +TK ++ R+P W E Q+ + EE L + VC +
Sbjct: 49 DPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCD-EDK 107
Query: 484 IGLLHPKETLGYIDINLSDVVSNKRIN 510
G E +G +L + +N+R N
Sbjct: 108 FG---HNEFIGETRFSLKKLKANQRKN 131
>pdb|2ENP|A Chain A, Solution Structure Of The First C2 Domain From Human BK
Protein
Length = 147
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 53/100 (53%), Gaps = 9/100 (9%)
Query: 256 LHVKVVKAMNL-------KKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEY 308
L V+V++A +L + + S+PYVK+ + D+ SK+T VK K P + E Y
Sbjct: 28 LTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERY 87
Query: 309 NFTVRDPESQ--AVELAVYDWEQVGKHDKMGMNVVPLKEL 346
F + E+Q + L V D+++ +H +G VPL E+
Sbjct: 88 TFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEV 127
>pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound
Length = 138
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 4/96 (4%)
Query: 246 SKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVK--LKITEDKLPSKKTTVKHKNLNPE 303
S Y + V ++KA NLK D+ G SDPYVK L + ++ KKT K +NLNP
Sbjct: 8 SLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPI 67
Query: 304 WNEEYNFTV--RDPESQAVELAVYDWEQVGKHDKMG 337
+NE + F + + + V D +++ ++D +G
Sbjct: 68 FNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIG 103
>pdb|2DMG|A Chain A, Solution Structure Of The Third C2 Domain Of Kiaa1228
Protein
Length = 142
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 274 ASDPYVKLKITEDKLPS--KKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAV 324
SDPYV++ + DK S +KT V K LNP +++ ++F+V PE Q L V
Sbjct: 43 GSDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDV 95
Score = 30.4 bits (67), Expect = 2.3, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 414 LVVIVHEAQDVEG--KHHTNPYARILF-----RGEERKTKHVKKNRDPRWEEEFQFMLEE 466
L+V+VH +++ + ++PY R+ R RKT KK +P +++ F F +
Sbjct: 26 LIVVVHACRNLIAFSEDGSDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSL 85
Query: 467 PPTNDR 472
P R
Sbjct: 86 PEVQRR 91
>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo
C2a- Domain
Length = 142
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 55/109 (50%), Gaps = 14/109 (12%)
Query: 253 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLP-----------SKKTTVKHKNLN 301
+G L + +++A NL +D G SDP+VK+ + + ++T K+LN
Sbjct: 17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLN 76
Query: 302 PEWNEEY---NFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELT 347
PEWN+ + ++ + +E+ V+D+++ +D +G ++ L +
Sbjct: 77 PEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTS 125
>pdb|1DJG|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJG|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJH|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJH|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJI|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJI|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJW|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJW|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJX|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJX|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJY|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJY|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJZ|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|1DJZ|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|2ISD|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
pdb|2ISD|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Length = 624
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 256 LHVKVVKAMNLKK--KDLLGASDPYVKLKI---TEDKLPSKKTTVKHKNLNPEWNEEYNF 310
L V+++ L K K+ DP V ++I D + + + NP W+ E+ F
Sbjct: 499 LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 558
Query: 311 TVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKEL 346
V P+ V V D++ K+D +G + +P L
Sbjct: 559 EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSL 594
>pdb|1QAS|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAS|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAT|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
pdb|1QAT|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
Length = 622
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 256 LHVKVVKAMNLKK--KDLLGASDPYVKLKI---TEDKLPSKKTTVKHKNLNPEWNEEYNF 310
L V+++ L K K+ DP V ++I D + + + NP W+ E+ F
Sbjct: 497 LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 556
Query: 311 TVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKEL 346
V P+ V V D++ K+D +G + +P L
Sbjct: 557 EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSL 592
>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2
pdb|1CJY|B Chain B, Human Cytosolic Phospholipase A2
Length = 749
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%)
Query: 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEY 308
Y ++ ++ K D+L DPYV+L I+ K+T + ++NP WNE +
Sbjct: 16 YSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETF 75
Query: 309 NFTVRDPESQAVELAVYDWEQV 330
F + + +E+ + D V
Sbjct: 76 EFILDPNQENVLEITLMDANYV 97
>pdb|1UGK|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Iv From Human Fetal Brain (Kiaa1342)
Length = 138
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 275 SDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVY----DWEQV 330
SDPY+K+ I +K KT V K L+P ++E + F P +Q ELA++ +++
Sbjct: 44 SDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTF-YGIPYTQIQELALHFTILSFDRF 102
Query: 331 GKHDKMGMNVVPLKELTPEE 350
+ D +G ++PL + E
Sbjct: 103 SRDDIIGEVLIPLSGIELSE 122
>pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized
Average Structure
Length = 138
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%)
Query: 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEY 308
Y ++ ++ K D+L DPYV+L I+ K+T + ++NP WNE +
Sbjct: 16 YSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETF 75
Query: 309 NFTVRDPESQAVELAVYDWEQV 330
F + + +E+ + D V
Sbjct: 76 EFILDPNQENVLEITLMDANYV 97
>pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic
Phospholipase A2
Length = 126
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 258 VKVVKAMNLKKK---DLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRD 314
V V++A + K D+L DPYV+L I+ K+T + ++NP WNE + F +
Sbjct: 7 VVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDP 66
Query: 315 PESQAVELAVYDWEQV 330
+ +E+ + D V
Sbjct: 67 NQENVLEITLMDANYV 82
>pdb|2DMH|A Chain A, Solution Structure Of The First C2 Domain Of Human
Myoferlin
Length = 140
Score = 38.5 bits (88), Expect = 0.010, Method: Composition-based stats.
Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 8/130 (6%)
Query: 254 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVR 313
G+L V V A N+ K G DP V + ++K +KK LNP WNE F +R
Sbjct: 7 GMLRVIVESASNIPKTKF-GKPDPIVSVIFKDEKKKTKKVD---NELNPVWNEILEFDLR 62
Query: 314 DPE---SQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNE 370
S ++ + V D+E +G++ +G V LK+LT ++ L+ ++ GQ+
Sbjct: 63 GIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLN-EKGQDT 121
Query: 371 KSRGQLVVEF 380
+ LV+ +
Sbjct: 122 GATIDLVIGY 131
>pdb|2B3R|A Chain A, Crystal Structure Of The C2 Domain Of Class Ii
Phosphatidylinositide 3-Kinase C2
pdb|2B3R|B Chain B, Crystal Structure Of The C2 Domain Of Class Ii
Phosphatidylinositide 3-Kinase C2
Length = 134
Score = 35.4 bits (80), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 58/115 (50%), Gaps = 10/115 (8%)
Query: 246 SKAYRRPVGILHVKVVKAMNLKKKDLLGAS-DPYVKLKITED--KLPSKKTTVKHKNLNP 302
S +YR G L + V+ +L +D GA +PYVK + D K +KT + K NP
Sbjct: 14 SVSYRN--GTLFIMVMHIKDLVTED--GADPNPYVKTYLLPDTHKTSKRKTKISRKTRNP 69
Query: 303 EWNEEYNFTVRDPES---QAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVK 354
+NE ++ E+ + ++L+V E + ++ +G +PLK+ + +VK
Sbjct: 70 TFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVK 124
>pdb|2XD4|A Chain A, Nucleotide-Bound Structures Of Bacillus Subtilis
Glycinamide Ribonucleotide Synthetase
Length = 422
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 14/102 (13%)
Query: 57 PEIPLWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFE 116
PE+PL D ++ L + P AI + +K AK ++ KY I + E+E
Sbjct: 70 PEVPLIEGLVD----EFEKAGLHVFGPSKAAAIIEGSKQFAKDLM----KKYDIPTAEYE 121
Query: 117 TLTLGTLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGV 158
T T +F K YV ++ I+ AA VT+ +
Sbjct: 122 TFT------SFDEAKAYVQEKGAPIVIKADGLAAGKGVTVAM 157
>pdb|3HHM|A Chain A, Crystal Structure Of P110alpha H1047r Mutant In Complex
With Nish2 Of P85alpha And The Drug Wortmannin
Length = 1091
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 433 YARI-LFRGEERKTKHVKKNR----DPRWEEEFQFMLEEP--PTNDRLHVEVCSVSSRIG 485
Y R ++ G E +V R +PRW E + + P P RL + +CSV R G
Sbjct: 378 YVRTGIYHGGEPLCDNVNTQRVPCSNPRWNEWLNYDIYIPDLPRAARLCLSICSVKGRKG 437
Query: 486 LLHPKETLGYIDINLSD 502
L + +INL D
Sbjct: 438 AKEEHCPLAWGNINLFD 454
>pdb|2RD0|A Chain A, Structure Of A Human P110alpha/p85alpha Complex
Length = 1096
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 433 YARI-LFRGEERKTKHVKKNR----DPRWEEEFQFMLEEP--PTNDRLHVEVCSVSSRIG 485
Y R ++ G E +V R +PRW E + + P P RL + +CSV R G
Sbjct: 383 YVRTGIYHGGEPLCDNVNTQRVPCSNPRWNEWLNYDIYIPDLPRAARLCLSICSVKGRKG 442
Query: 486 LLHPKETLGYIDINLSD 502
L + +INL D
Sbjct: 443 AKEEHCPLAWGNINLFD 459
>pdb|3ZIM|A Chain A, Discovery Of A Potent And Isoform-selective Targeted
Covalent Inhibitor Of The Lipid Kinase Pi3kalpha
Length = 940
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 433 YARI-LFRGEERKTKHVKKNR----DPRWEEEFQFMLEEP--PTNDRLHVEVCSVSSRIG 485
Y R ++ G E +V R +PRW E + + P P RL + +CSV R G
Sbjct: 249 YVRTGIYHGGEPLCDNVNTQRVPCSNPRWNEWLNYDIYIPDLPRAARLCLSICSVKGRKG 308
Query: 486 LLHPKETLGYIDINLSD 502
L + +INL D
Sbjct: 309 AKEEHCPLAWGNINLFD 325
>pdb|3NSJ|A Chain A, The X-Ray Crystal Structure Of Lymphocyte Perforin
Length = 540
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 410 GGGLLVVIVHEAQDVEGKH--HTNPYARILFRGEERKTKHVKKNRDPRWEEEFQF 462
G LVV A+ + G + T+ Y ++ F G+E +T V N +PRW ++ F
Sbjct: 392 GLAHLVVSNFRAEHLWGDYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDF 446
>pdb|3HIZ|A Chain A, Crystal Structure Of P110alpha H1047r Mutant In Complex
With Nish2 Of P85alpha
Length = 1096
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 433 YARI-LFRGEERKTKHVKKNR----DPRWEEEFQFMLEEP--PTNDRLHVEVCSVSSRIG 485
Y R ++ G E +V R +PRW E + + P P RL + +CSV R G
Sbjct: 383 YVRTGIYHGGEPLCDNVNTQRVPCSNPRWNEWLNYDIYIPDLPRAARLCLSICSVKGRKG 442
Query: 486 LLHPKETLGYIDINLSD 502
L + +INL D
Sbjct: 443 AKEEHCPLAWGNINLFD 459
>pdb|4A55|A Chain A, Crystal Structure Of P110alpha In Complex With Ish2 Of
P85alpha And The Inhibitor Pik-108
Length = 1096
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 433 YARI-LFRGEERKTKHVKKNR----DPRWEEEFQFMLEEP--PTNDRLHVEVCSVSSRIG 485
Y R ++ G E +V R +PRW E + + P P RL + +CSV R G
Sbjct: 383 YVRTGIYHGGEPLCDNVNTQRVPCSNPRWNEWLNYDIYIPDLPRAARLCLSICSVKGRKG 442
Query: 486 LLHPKETLGYIDINLSD 502
L + +INL D
Sbjct: 443 AKEEHCPLAWGNINLFD 459
>pdb|3FBK|A Chain A, Crystal Structure Of The C2 Domain Of The Human Regulator
Of G-Protein Signaling 3 Isoform 6 (Rgp3), Northeast
Structural Genomics Consortium Target Hr5550a
pdb|3FBK|B Chain B, Crystal Structure Of The C2 Domain Of The Human Regulator
Of G-Protein Signaling 3 Isoform 6 (Rgp3), Northeast
Structural Genomics Consortium Target Hr5550a
Length = 153
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 15/103 (14%)
Query: 431 NPYARILFRGEERKTKHVKKN-----RDPRWEEEFQFMLEEPPTNDRLHVEV---CSVSS 482
+PY +I E+ + +H K RDP + E F F ++E RL V V S S
Sbjct: 48 DPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRASQSR 107
Query: 483 RIGLLHPKETLGYIDINLSDVVS-NKRINEKYHLIDSKNGRIQ 524
+ GL +G + +++ +K I+ Y+L+ GR +
Sbjct: 108 QSGL------IGCXSFGVKSLLTPDKEISGWYYLLGEHLGRTK 144
>pdb|2ENQ|A Chain A, Solution Structure Of The C2 Domain From Human Pi3-Kinase
P110 Subunit Alpha
Length = 158
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 437 LFRGEERKTKHVKKNR----DPRWEEEFQFMLEEP--PTNDRLHVEVCSVSSRIGLLHPK 490
++ G E +V R +PRW E + + P P RL + +CSV R G
Sbjct: 37 IYHGGEPLCDNVNTQRVPCSNPRWNEWLNYDIYIPDLPRAARLCLSICSVKGRKGAKEEH 96
Query: 491 ETLGYIDINLSD 502
L + +INL D
Sbjct: 97 CPLAWGNINLFD 108
>pdb|2BWQ|A Chain A, Crystal Structure Of The Rim2 C2a-Domain At 1.4 Angstrom
Resolution
Length = 129
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 8/58 (13%)
Query: 411 GGLLVVIVHEAQDV---EGKHHTNPYARILF---RGEE--RKTKHVKKNRDPRWEEEF 460
G L+V + A+D+ E NPY +I F R ++ R+TK VKK +P+W + F
Sbjct: 17 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTF 74
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVK--HKNLNPEWNEEYNFT-- 311
L V ++ A +L ++ +PYVK+ D+ K K K L P+WN+ + ++
Sbjct: 20 LIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPV 79
Query: 312 -VRDPESQAVELAVYDWEQV 330
R+ + +E+ ++D +V
Sbjct: 80 HRREFRERMLEITLWDQARV 99
>pdb|1V27|A Chain A, Solution Structure Of The First C2 Domain Of Rim2
Length = 141
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 8/60 (13%)
Query: 411 GGLLVVIVHEAQDV---EGKHHTNPYARILF---RGEE--RKTKHVKKNRDPRWEEEFQF 462
G L+V + A+D+ E NPY +I F R ++ R+TK VKK +P+W + F +
Sbjct: 20 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIY 79
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVK--HKNLNPEWNEEYNFT-- 311
L V ++ A +L ++ +PYVK+ D+ K K K L P+WN+ + ++
Sbjct: 23 LIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPV 82
Query: 312 -VRDPESQAVELAVYDWEQV 330
R+ + +E+ ++D +V
Sbjct: 83 HRREFRERMLEITLWDQARV 102
>pdb|3FDW|A Chain A, Crystal Structure Of A C2 Domain From Human Synaptotagmin-
Like Protein 4
pdb|3FDW|B Chain B, Crystal Structure Of A C2 Domain From Human Synaptotagmin-
Like Protein 4
Length = 148
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 8/69 (11%)
Query: 275 SDPYVKLKITEDKLPS--KKTTVKHKNLNPEWNEEYNFTVRDPES----QAVELAVYDWE 328
S+PYVK + DK +KT++K +NP ++E + + PES + ++ +V+
Sbjct: 45 SNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEI--PESLLAQRTLQFSVWHHG 102
Query: 329 QVGKHDKMG 337
+ G++ +G
Sbjct: 103 RFGRNTFLG 111
>pdb|2E0I|A Chain A, Crystal Structure Of Archaeal Photolyase From Sulfolobus
Tokodaii With Two Fad Molecules: Implication Of A Novel
Light-Harvesting Cofactor
pdb|2E0I|B Chain B, Crystal Structure Of Archaeal Photolyase From Sulfolobus
Tokodaii With Two Fad Molecules: Implication Of A Novel
Light-Harvesting Cofactor
pdb|2E0I|C Chain C, Crystal Structure Of Archaeal Photolyase From Sulfolobus
Tokodaii With Two Fad Molecules: Implication Of A Novel
Light-Harvesting Cofactor
pdb|2E0I|D Chain D, Crystal Structure Of Archaeal Photolyase From Sulfolobus
Tokodaii With Two Fad Molecules: Implication Of A Novel
Light-Harvesting Cofactor
Length = 440
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 279 VKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYD 326
++ K ED L + K+ H+N +NE VR+PE+ V D
Sbjct: 119 IEFKAYEDYLLTPKSLFHHRNFTSFYNEVSKVKVREPETMEGSFDVTD 166
>pdb|2NTY|A Chain A, Rop4-Gdp-Prone8
pdb|2NTY|B Chain B, Rop4-Gdp-Prone8
pdb|2WBL|A Chain A, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|B Chain B, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 365
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 15/106 (14%)
Query: 430 TNPYARILFRGEERKTKHVKKNRDPRWEEEFQFML-----------EEPPTNDRLHVEVC 478
TN A I GE+ K + + ++R RW++E ++L + + D + E+
Sbjct: 45 TNLAASIF--GEQTKLQPMPQDRQARWKKEIDWLLSVTDHIVEFVPSQQTSKDGVCTEIM 102
Query: 479 SVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLI--DSKNGR 522
R LL L +D L D + N R + ++ + DS+ G+
Sbjct: 103 VTRQRGDLLMNIPALRKLDAMLIDTLDNFRGHNEFWYVSRDSEEGQ 148
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.138 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,030,800
Number of Sequences: 62578
Number of extensions: 757687
Number of successful extensions: 1704
Number of sequences better than 100.0: 74
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1576
Number of HSP's gapped (non-prelim): 116
length of query: 532
length of database: 14,973,337
effective HSP length: 103
effective length of query: 429
effective length of database: 8,527,803
effective search space: 3658427487
effective search space used: 3658427487
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)