Query 009539
Match_columns 532
No_of_seqs 424 out of 2903
Neff 9.0
Searched_HMMs 46136
Date Thu Mar 28 14:21:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009539.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009539hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5038 Ca2+-dependent lipid-b 100.0 3.6E-67 7.8E-72 558.4 34.9 489 2-532 165-694 (1227)
2 KOG1028 Ca2+-dependent phospho 100.0 1.1E-30 2.5E-35 267.9 22.0 222 248-502 161-393 (421)
3 KOG2059 Ras GTPase-activating 99.9 4.6E-23 1E-27 210.7 16.8 242 254-530 5-276 (800)
4 cd04016 C2_Tollip C2 domain pr 99.9 7.4E-22 1.6E-26 167.8 14.2 119 253-382 1-121 (121)
5 cd04042 C2A_MCTP_PRT C2 domain 99.8 3.1E-20 6.7E-25 159.5 14.6 121 255-384 1-121 (121)
6 cd08682 C2_Rab11-FIP_classI C2 99.8 2.7E-20 5.9E-25 161.0 13.5 119 256-381 1-126 (126)
7 cd08681 C2_fungal_Inn1p-like C 99.8 2.7E-20 5.9E-25 159.2 12.6 117 254-382 1-118 (118)
8 cd04016 C2_Tollip C2 domain pr 99.8 7.4E-20 1.6E-24 155.5 14.6 112 412-529 2-121 (121)
9 cd04036 C2_cPLA2 C2 domain pre 99.8 8.2E-20 1.8E-24 156.4 15.0 116 256-382 2-117 (119)
10 COG5038 Ca2+-dependent lipid-b 99.8 2.5E-19 5.3E-24 193.4 22.1 275 249-531 706-1162(1227)
11 cd08375 C2_Intersectin C2 doma 99.8 9.5E-20 2.1E-24 159.1 14.9 121 249-382 10-135 (136)
12 cd08376 C2B_MCTP_PRT C2 domain 99.8 8.4E-20 1.8E-24 155.7 14.2 115 255-383 1-115 (116)
13 cd08395 C2C_Munc13 C2 domain t 99.8 9.9E-20 2.1E-24 154.3 14.4 107 256-363 2-115 (120)
14 cd08677 C2A_Synaptotagmin-13 C 99.8 3.3E-20 7.2E-25 154.9 10.5 107 248-357 8-117 (118)
15 cd08677 C2A_Synaptotagmin-13 C 99.8 5.8E-20 1.3E-24 153.5 11.8 113 374-515 1-118 (118)
16 cd08379 C2D_MCTP_PRT_plant C2 99.8 1.9E-19 4.1E-24 154.0 13.1 116 255-378 1-125 (126)
17 KOG1030 Predicted Ca2+-depende 99.8 8.4E-20 1.8E-24 158.1 10.1 99 251-353 3-101 (168)
18 cd04019 C2C_MCTP_PRT_plant C2 99.8 3.6E-19 7.8E-24 157.8 14.2 129 255-386 1-135 (150)
19 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 5E-19 1.1E-23 152.5 13.7 122 255-380 1-122 (123)
20 cd08391 C2A_C2C_Synaptotagmin_ 99.8 6.4E-19 1.4E-23 151.4 14.1 112 412-529 1-121 (121)
21 cd04044 C2A_Tricalbin-like C2 99.8 6.7E-19 1.4E-23 152.0 14.0 122 253-384 1-124 (124)
22 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 9.4E-19 2E-23 149.8 14.6 119 256-382 2-121 (121)
23 cd04022 C2A_MCTP_PRT_plant C2 99.8 5.4E-19 1.2E-23 153.1 13.1 120 256-383 2-126 (127)
24 cd04024 C2A_Synaptotagmin-like 99.8 6.5E-19 1.4E-23 153.0 13.3 123 254-382 1-128 (128)
25 cd04028 C2B_RIM1alpha C2 domai 99.8 9.6E-19 2.1E-23 153.2 14.2 110 253-363 28-141 (146)
26 cd08400 C2_Ras_p21A1 C2 domain 99.8 1.7E-18 3.7E-23 149.5 15.7 122 253-384 3-124 (126)
27 cd08381 C2B_PI3K_class_II C2 d 99.8 4.5E-19 9.7E-24 152.0 11.8 105 253-358 12-121 (122)
28 cd08678 C2_C21orf25-like C2 do 99.8 1.7E-18 3.7E-23 149.7 15.4 122 256-385 1-122 (126)
29 cd08682 C2_Rab11-FIP_classI C2 99.8 9.6E-19 2.1E-23 151.3 13.7 111 414-528 1-126 (126)
30 cd08391 C2A_C2C_Synaptotagmin_ 99.8 8.6E-19 1.9E-23 150.6 13.0 115 254-382 1-121 (121)
31 cd04029 C2A_SLP-4_5 C2 domain 99.8 1.5E-18 3.2E-23 149.5 13.3 115 373-516 1-125 (125)
32 cd04015 C2_plant_PLD C2 domain 99.8 3.3E-18 7.2E-23 153.2 16.0 123 253-383 6-158 (158)
33 cd08681 C2_fungal_Inn1p-like C 99.8 1.5E-18 3.3E-23 148.4 13.2 112 412-529 1-118 (118)
34 cd04046 C2_Calpain C2 domain p 99.8 3.6E-18 7.7E-23 147.6 15.6 123 252-384 1-123 (126)
35 cd08393 C2A_SLP-1_2 C2 domain 99.8 9.3E-19 2E-23 150.9 11.9 110 249-358 10-124 (125)
36 cd08381 C2B_PI3K_class_II C2 d 99.8 1.4E-18 3.1E-23 148.9 12.7 112 373-515 1-121 (122)
37 cd04029 C2A_SLP-4_5 C2 domain 99.8 1.3E-18 2.9E-23 149.8 12.5 110 249-358 10-124 (125)
38 cd08400 C2_Ras_p21A1 C2 domain 99.8 6.2E-18 1.3E-22 146.0 15.8 115 411-531 3-124 (126)
39 cd08378 C2B_MCTP_PRT_plant C2 99.8 3.1E-18 6.8E-23 146.6 13.7 115 255-383 1-120 (121)
40 cd08393 C2A_SLP-1_2 C2 domain 99.8 1.7E-18 3.7E-23 149.3 12.1 115 373-516 1-125 (125)
41 cd04028 C2B_RIM1alpha C2 domai 99.8 3.9E-18 8.4E-23 149.4 14.5 116 370-518 14-139 (146)
42 cd08387 C2A_Synaptotagmin-8 C2 99.8 1.7E-18 3.8E-23 149.3 12.1 110 249-358 11-122 (124)
43 cd08376 C2B_MCTP_PRT C2 domain 99.8 4.6E-18 9.9E-23 144.9 14.6 112 413-530 1-115 (116)
44 cd04024 C2A_Synaptotagmin-like 99.8 4.2E-18 9.2E-23 147.8 14.4 113 412-529 1-128 (128)
45 cd04042 C2A_MCTP_PRT C2 domain 99.8 6.6E-18 1.4E-22 145.0 15.0 113 413-531 1-121 (121)
46 cd04033 C2_NEDD4_NEDD4L C2 dom 99.8 5.8E-18 1.3E-22 148.0 14.6 123 255-383 1-133 (133)
47 cd08379 C2D_MCTP_PRT_plant C2 99.8 4.6E-18 1E-22 145.4 13.3 111 413-525 1-125 (126)
48 cd08385 C2A_Synaptotagmin-1-5- 99.8 3.3E-18 7.2E-23 147.6 12.3 110 249-358 11-122 (124)
49 cd08375 C2_Intersectin C2 doma 99.8 1.1E-17 2.4E-22 146.0 15.7 116 409-529 12-135 (136)
50 cd08378 C2B_MCTP_PRT_plant C2 99.8 5.4E-18 1.2E-22 145.1 12.9 111 413-530 1-120 (121)
51 cd08377 C2C_MCTP_PRT C2 domain 99.8 7.8E-18 1.7E-22 144.2 14.0 118 254-382 1-118 (119)
52 cd04019 C2C_MCTP_PRT_plant C2 99.8 8.6E-18 1.9E-22 149.0 14.3 114 413-531 1-133 (150)
53 cd04041 C2A_fungal C2 domain f 99.8 2.7E-18 5.9E-23 144.9 10.6 95 254-348 1-99 (111)
54 cd08388 C2A_Synaptotagmin-4-11 99.8 5.2E-18 1.1E-22 146.8 12.5 110 249-358 11-126 (128)
55 cd08392 C2A_SLP-3 C2 domain fi 99.8 6E-18 1.3E-22 146.0 12.7 115 373-516 1-128 (128)
56 cd04010 C2B_RasA3 C2 domain se 99.8 7.7E-18 1.7E-22 148.4 13.6 123 256-380 2-147 (148)
57 cd08685 C2_RGS-like C2 domain 99.8 5.7E-18 1.2E-22 144.4 12.1 102 411-515 11-119 (119)
58 cd04014 C2_PKC_epsilon C2 doma 99.8 1.5E-17 3.2E-22 145.1 14.7 116 253-384 3-130 (132)
59 cd08680 C2_Kibra C2 domain fou 99.8 4.2E-18 9.2E-23 145.6 10.6 110 248-357 8-123 (124)
60 cd04043 C2_Munc13_fungal C2 do 99.8 2.1E-17 4.5E-22 143.0 15.0 118 255-384 2-122 (126)
61 cd04054 C2A_Rasal1_RasA4 C2 do 99.8 1.7E-17 3.6E-22 142.3 14.0 118 256-381 2-120 (121)
62 cd08387 C2A_Synaptotagmin-8 C2 99.8 1.1E-17 2.5E-22 144.2 13.0 116 372-516 1-123 (124)
63 cd04036 C2_cPLA2 C2 domain pre 99.8 1.5E-17 3.4E-22 142.3 13.7 110 414-529 2-117 (119)
64 cd04022 C2A_MCTP_PRT_plant C2 99.8 1.3E-17 2.9E-22 144.3 13.1 114 413-530 1-126 (127)
65 cd08392 C2A_SLP-3 C2 domain fi 99.8 7.3E-18 1.6E-22 145.5 11.4 110 249-358 10-127 (128)
66 cd04017 C2D_Ferlin C2 domain f 99.8 2.7E-17 5.8E-22 143.9 15.1 120 255-385 2-134 (135)
67 cd08678 C2_C21orf25-like C2 do 99.7 4.1E-17 9E-22 141.0 15.4 113 414-532 1-122 (126)
68 cd08386 C2A_Synaptotagmin-7 C2 99.7 1.6E-17 3.5E-22 143.5 12.8 110 249-358 11-123 (125)
69 cd04039 C2_PSD C2 domain prese 99.7 9.2E-18 2E-22 140.4 10.6 94 254-350 1-99 (108)
70 cd08373 C2A_Ferlin C2 domain f 99.7 3.6E-17 7.7E-22 141.7 14.6 117 260-387 2-120 (127)
71 cd08382 C2_Smurf-like C2 domai 99.7 2.8E-17 6E-22 141.4 13.8 118 256-380 2-122 (123)
72 cd08385 C2A_Synaptotagmin-1-5- 99.7 2.7E-17 5.9E-22 141.9 12.8 115 373-516 2-123 (124)
73 cd04014 C2_PKC_epsilon C2 doma 99.7 8.3E-17 1.8E-21 140.4 15.9 112 411-531 3-130 (132)
74 cd08389 C2A_Synaptotagmin-14_1 99.7 1.8E-17 4E-22 142.6 11.3 110 248-358 10-122 (124)
75 cd04030 C2C_KIAA1228 C2 domain 99.7 2.9E-17 6.4E-22 142.3 12.6 118 372-516 1-127 (127)
76 cd08394 C2A_Munc13 C2 domain f 99.7 3.9E-17 8.5E-22 137.8 12.8 97 412-516 2-100 (127)
77 cd08401 C2A_RasA2_RasA3 C2 dom 99.7 7E-17 1.5E-21 138.2 14.5 110 414-529 2-121 (121)
78 cd04031 C2A_RIM1alpha C2 domai 99.7 3.7E-17 8.1E-22 141.2 12.8 114 373-516 2-125 (125)
79 cd04032 C2_Perforin C2 domain 99.7 4.3E-17 9.3E-22 139.7 12.9 105 240-348 13-119 (127)
80 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 4.5E-17 9.7E-22 146.5 13.7 128 373-517 1-138 (162)
81 cd08521 C2A_SLP C2 domain firs 99.7 2.3E-17 5E-22 142.1 11.2 110 249-358 9-123 (123)
82 cd04050 C2B_Synaptotagmin-like 99.7 4.5E-17 9.7E-22 136.0 12.5 98 413-518 1-103 (105)
83 cd08685 C2_RGS-like C2 domain 99.7 1.6E-17 3.4E-22 141.6 9.9 106 252-358 10-119 (119)
84 cd04030 C2C_KIAA1228 C2 domain 99.7 3.4E-17 7.3E-22 141.9 12.2 110 249-358 11-126 (127)
85 cd08680 C2_Kibra C2 domain fou 99.7 2.8E-17 6E-22 140.6 11.4 112 375-515 2-124 (124)
86 cd08390 C2A_Synaptotagmin-15-1 99.7 5.4E-17 1.2E-21 139.8 13.1 111 248-358 8-121 (123)
87 cd04050 C2B_Synaptotagmin-like 99.7 2.6E-17 5.7E-22 137.5 10.5 99 255-359 1-101 (105)
88 cd04040 C2D_Tricalbin-like C2 99.7 8.8E-17 1.9E-21 136.7 13.7 114 256-378 1-114 (115)
89 cd04052 C2B_Tricalbin-like C2 99.7 7.6E-17 1.6E-21 136.0 12.9 100 427-532 10-111 (111)
90 cd08407 C2B_Synaptotagmin-13 C 99.7 1.7E-17 3.6E-22 144.3 9.0 115 373-518 1-126 (138)
91 cd04031 C2A_RIM1alpha C2 domai 99.7 4.8E-17 1E-21 140.6 11.8 109 249-358 11-124 (125)
92 cd08676 C2A_Munc13-like C2 dom 99.7 3.4E-17 7.3E-22 144.8 10.8 108 246-358 20-153 (153)
93 cd08373 C2A_Ferlin C2 domain f 99.7 1.7E-16 3.7E-21 137.5 14.8 111 418-532 2-118 (127)
94 cd08395 C2C_Munc13 C2 domain t 99.7 1.1E-16 2.3E-21 135.8 12.7 101 413-517 1-112 (120)
95 cd04044 C2A_Tricalbin-like C2 99.7 1.6E-16 3.4E-21 137.1 14.1 114 412-531 2-124 (124)
96 cd04051 C2_SRC2_like C2 domain 99.7 6.6E-17 1.4E-21 139.7 11.2 115 255-378 1-125 (125)
97 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 2E-16 4.2E-21 136.3 14.0 110 413-527 1-122 (123)
98 cd04049 C2_putative_Elicitor-r 99.7 5.7E-17 1.2E-21 139.9 10.7 104 254-360 1-108 (124)
99 cd08690 C2_Freud-1 C2 domain f 99.7 3.4E-16 7.3E-21 138.1 15.5 124 254-384 4-138 (155)
100 cd08521 C2A_SLP C2 domain firs 99.7 1.3E-16 2.8E-21 137.5 12.4 113 374-515 1-123 (123)
101 cd08688 C2_KIAA0528-like C2 do 99.7 5.4E-17 1.2E-21 136.7 9.8 101 256-359 1-108 (110)
102 cd04015 C2_plant_PLD C2 domain 99.7 3.1E-16 6.7E-21 140.5 15.2 113 411-530 6-158 (158)
103 cd04039 C2_PSD C2 domain prese 99.7 1.5E-16 3.1E-21 133.1 12.2 92 412-507 1-99 (108)
104 KOG1030 Predicted Ca2+-depende 99.7 1.1E-16 2.3E-21 138.8 11.5 92 410-507 4-98 (168)
105 cd08388 C2A_Synaptotagmin-4-11 99.7 2.1E-16 4.6E-21 136.6 13.4 116 372-516 1-127 (128)
106 cd04018 C2C_Ferlin C2 domain t 99.7 1.6E-16 3.5E-21 140.3 12.8 107 413-523 1-131 (151)
107 cd08389 C2A_Synaptotagmin-14_1 99.7 1.4E-16 3.1E-21 137.0 12.2 114 373-516 2-123 (124)
108 cd08386 C2A_Synaptotagmin-7 C2 99.7 2.8E-16 6E-21 135.8 14.0 115 373-516 2-124 (125)
109 cd08407 C2B_Synaptotagmin-13 C 99.7 2.2E-17 4.8E-22 143.6 6.8 110 249-360 10-125 (138)
110 cd08406 C2B_Synaptotagmin-12 C 99.7 4.8E-17 1E-21 141.6 8.8 110 249-360 10-123 (136)
111 cd04027 C2B_Munc13 C2 domain s 99.7 2.8E-16 6.2E-21 135.9 13.7 115 255-380 2-127 (127)
112 cd04045 C2C_Tricalbin-like C2 99.7 1.1E-16 2.4E-21 136.7 10.9 103 254-360 1-103 (120)
113 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 1.3E-16 2.9E-21 143.4 11.8 109 250-358 23-136 (162)
114 cd08406 C2B_Synaptotagmin-12 C 99.7 4.8E-17 1E-21 141.6 8.5 117 373-520 1-126 (136)
115 cd04037 C2E_Ferlin C2 domain f 99.7 1.1E-16 2.3E-21 137.9 10.6 121 255-385 1-121 (124)
116 cd08692 C2B_Tac2-N C2 domain s 99.7 9.2E-17 2E-21 137.6 9.9 120 374-523 1-129 (135)
117 cd08377 C2C_MCTP_PRT C2 domain 99.7 6.1E-16 1.3E-20 132.4 15.1 110 412-529 1-118 (119)
118 cd08384 C2B_Rabphilin_Doc2 C2 99.7 8.5E-17 1.8E-21 140.6 9.4 110 249-360 8-121 (133)
119 cd04010 C2B_RasA3 C2 domain se 99.7 1.5E-16 3.3E-21 140.2 10.9 101 413-517 1-122 (148)
120 cd04026 C2_PKC_alpha_gamma C2 99.7 4.9E-16 1.1E-20 135.3 13.7 119 373-523 1-127 (131)
121 cd08688 C2_KIAA0528-like C2 do 99.7 2.6E-16 5.6E-21 132.6 11.5 100 414-517 1-109 (110)
122 cd04018 C2C_Ferlin C2 domain t 99.7 2E-16 4.4E-21 139.6 11.2 93 255-350 1-108 (151)
123 cd04009 C2B_Munc13-like C2 dom 99.7 2.7E-16 5.8E-21 137.2 11.6 101 249-349 11-119 (133)
124 cd08394 C2A_Munc13 C2 domain f 99.7 2.8E-16 6E-21 132.7 11.2 100 254-362 2-103 (127)
125 cd04038 C2_ArfGAP C2 domain pr 99.7 2.3E-16 5E-21 138.7 11.1 92 254-350 2-93 (145)
126 PLN03008 Phospholipase D delta 99.7 4E-16 8.7E-21 166.6 15.0 128 253-388 13-182 (868)
127 cd08409 C2B_Synaptotagmin-15 C 99.7 1.7E-16 3.7E-21 139.0 9.4 122 373-523 1-130 (137)
128 cd08390 C2A_Synaptotagmin-15-1 99.7 6.1E-16 1.3E-20 133.2 12.8 114 374-516 1-122 (123)
129 cd08405 C2B_Synaptotagmin-7 C2 99.7 9.8E-17 2.1E-21 140.7 7.9 109 249-359 10-122 (136)
130 cd04011 C2B_Ferlin C2 domain s 99.7 5.4E-16 1.2E-20 130.9 12.1 102 411-517 3-110 (111)
131 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 1.3E-15 2.8E-20 130.6 14.3 109 414-528 2-120 (121)
132 cd08675 C2B_RasGAP C2 domain s 99.7 5E-16 1.1E-20 135.9 11.8 107 256-363 1-123 (137)
133 cd04013 C2_SynGAP_like C2 doma 99.7 1.9E-15 4.1E-20 132.0 15.3 118 411-532 10-141 (146)
134 cd08691 C2_NEDL1-like C2 domai 99.7 1.8E-15 3.9E-20 131.6 14.8 118 255-380 2-136 (137)
135 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 1.1E-15 2.4E-20 133.5 13.6 111 413-529 1-132 (133)
136 cd04017 C2D_Ferlin C2 domain f 99.7 1.7E-15 3.8E-20 132.5 14.6 116 413-532 2-134 (135)
137 cd08404 C2B_Synaptotagmin-4 C2 99.7 1.4E-16 2.9E-21 139.8 7.6 108 249-358 10-121 (136)
138 cd04011 C2B_Ferlin C2 domain s 99.7 8.1E-16 1.8E-20 129.8 11.4 98 254-358 4-108 (111)
139 cd04038 C2_ArfGAP C2 domain pr 99.7 2.2E-15 4.7E-20 132.5 14.5 90 412-507 2-93 (145)
140 cd08692 C2B_Tac2-N C2 domain s 99.7 4.3E-16 9.3E-21 133.5 9.6 109 249-358 9-121 (135)
141 cd08402 C2B_Synaptotagmin-1 C2 99.7 3.6E-16 7.8E-21 137.1 9.2 121 373-524 1-130 (136)
142 cd04052 C2B_Tricalbin-like C2 99.7 7.6E-16 1.7E-20 129.9 10.8 102 271-385 9-111 (111)
143 cd08403 C2B_Synaptotagmin-3-5- 99.7 2.5E-16 5.4E-21 137.7 7.9 110 249-360 9-122 (134)
144 cd04048 C2A_Copine C2 domain f 99.7 8.2E-16 1.8E-20 131.7 10.9 99 260-358 6-112 (120)
145 cd08404 C2B_Synaptotagmin-4 C2 99.6 3.9E-16 8.5E-21 136.8 9.0 116 373-519 1-125 (136)
146 PLN03200 cellulose synthase-in 99.6 4.8E-16 1E-20 180.6 12.4 117 410-531 1978-2101(2102)
147 cd08408 C2B_Synaptotagmin-14_1 99.6 6.8E-16 1.5E-20 135.0 10.4 111 248-359 9-124 (138)
148 cd04035 C2A_Rabphilin_Doc2 C2 99.6 1.3E-15 2.9E-20 131.1 12.1 108 249-357 10-122 (123)
149 cd04013 C2_SynGAP_like C2 doma 99.6 4.2E-15 9.2E-20 129.8 15.1 126 252-385 9-141 (146)
150 cd08402 C2B_Synaptotagmin-1 C2 99.6 3.6E-16 7.8E-21 137.1 8.4 111 248-360 9-123 (136)
151 cd04021 C2_E3_ubiquitin_ligase 99.6 3.1E-15 6.7E-20 129.0 13.8 118 254-380 2-124 (125)
152 cd04046 C2_Calpain C2 domain p 99.6 4.5E-15 9.8E-20 128.2 14.9 112 411-531 2-123 (126)
153 cd08690 C2_Freud-1 C2 domain f 99.6 4.2E-15 9.1E-20 131.2 14.4 114 415-531 5-138 (155)
154 cd08410 C2B_Synaptotagmin-17 C 99.6 1.2E-15 2.7E-20 133.3 10.8 110 249-359 9-122 (135)
155 cd08405 C2B_Synaptotagmin-7 C2 99.6 4.9E-16 1.1E-20 136.2 8.0 117 373-520 1-126 (136)
156 cd00276 C2B_Synaptotagmin C2 d 99.6 8.7E-16 1.9E-20 134.4 9.3 120 374-524 1-129 (134)
157 cd04045 C2C_Tricalbin-like C2 99.6 6E-15 1.3E-19 126.1 14.2 106 412-524 1-110 (120)
158 cd08409 C2B_Synaptotagmin-15 C 99.6 5.2E-16 1.1E-20 135.9 7.7 111 249-360 10-124 (137)
159 cd04043 C2_Munc13_fungal C2 do 99.6 8.1E-15 1.8E-19 126.8 15.1 110 413-529 2-120 (126)
160 cd08382 C2_Smurf-like C2 domai 99.6 4.5E-15 9.8E-20 127.6 13.4 107 414-527 2-122 (123)
161 cd08686 C2_ABR C2 domain in th 99.6 5E-15 1.1E-19 123.4 13.0 95 256-357 1-106 (118)
162 cd08408 C2B_Synaptotagmin-14_1 99.6 1E-15 2.2E-20 134.0 8.8 120 374-523 2-131 (138)
163 cd04027 C2B_Munc13 C2 domain s 99.6 6.6E-15 1.4E-19 127.3 13.7 111 413-527 2-127 (127)
164 cd04009 C2B_Munc13-like C2 dom 99.6 5E-15 1.1E-19 129.2 12.2 105 372-505 1-118 (133)
165 cd08403 C2B_Synaptotagmin-3-5- 99.6 1.9E-15 4.1E-20 132.2 9.3 119 374-523 1-128 (134)
166 cd08410 C2B_Synaptotagmin-17 C 99.6 1.4E-15 3.1E-20 132.9 8.5 117 374-520 1-126 (135)
167 cd08384 C2B_Rabphilin_Doc2 C2 99.6 1.6E-15 3.5E-20 132.5 8.7 104 411-520 12-124 (133)
168 cd04032 C2_Perforin C2 domain 99.6 5.8E-15 1.3E-19 126.5 11.4 92 410-505 26-119 (127)
169 cd04041 C2A_fungal C2 domain f 99.6 6.2E-15 1.3E-19 124.4 11.2 98 412-516 1-107 (111)
170 KOG0696 Serine/threonine prote 99.6 3.8E-16 8.2E-21 152.2 4.2 108 252-360 178-288 (683)
171 cd04026 C2_PKC_alpha_gamma C2 99.6 6.5E-15 1.4E-19 128.3 11.5 106 254-360 13-121 (131)
172 cd04049 C2_putative_Elicitor-r 99.6 2.1E-14 4.4E-19 123.9 14.4 103 412-518 1-109 (124)
173 cd00276 C2B_Synaptotagmin C2 d 99.6 1.3E-15 2.9E-20 133.2 7.0 110 249-360 9-122 (134)
174 cd08383 C2A_RasGAP C2 domain ( 99.6 2.7E-14 5.9E-19 121.7 14.0 114 256-382 2-117 (117)
175 cd00275 C2_PLC_like C2 domain 99.6 3.7E-14 8.1E-19 122.9 15.1 119 255-382 3-127 (128)
176 cd08383 C2A_RasGAP C2 domain ( 99.6 2.3E-14 4.9E-19 122.3 13.4 109 414-529 2-117 (117)
177 cd04047 C2B_Copine C2 domain s 99.6 1.1E-14 2.5E-19 122.6 11.1 95 259-354 5-106 (110)
178 KOG1013 Synaptic vesicle prote 99.6 1.1E-15 2.3E-20 144.7 4.4 225 248-501 87-327 (362)
179 cd04051 C2_SRC2_like C2 domain 99.6 1.8E-14 3.9E-19 124.4 11.4 109 413-525 1-125 (125)
180 cd08675 C2B_RasGAP C2 domain s 99.6 2.6E-14 5.6E-19 125.0 11.4 102 414-519 1-122 (137)
181 cd04021 C2_E3_ubiquitin_ligase 99.6 1E-13 2.2E-18 119.5 14.5 108 413-527 3-124 (125)
182 cd04035 C2A_Rabphilin_Doc2 C2 99.5 6.5E-14 1.4E-18 120.5 12.7 106 373-508 1-116 (123)
183 cd08691 C2_NEDL1-like C2 domai 99.5 1.3E-13 2.8E-18 120.0 14.6 111 413-527 2-136 (137)
184 cd08676 C2A_Munc13-like C2 dom 99.5 5.8E-14 1.3E-18 124.2 12.1 98 408-515 24-153 (153)
185 cd04040 C2D_Tricalbin-like C2 99.5 8.7E-14 1.9E-18 118.2 12.1 100 414-518 1-104 (115)
186 PLN03008 Phospholipase D delta 99.5 7.9E-14 1.7E-18 149.2 14.5 98 428-532 75-179 (868)
187 cd08686 C2_ABR C2 domain in th 99.5 2.2E-13 4.8E-18 113.5 13.3 108 414-529 1-118 (118)
188 KOG0696 Serine/threonine prote 99.5 1.3E-14 2.7E-19 141.7 6.4 121 370-522 165-293 (683)
189 PF00168 C2: C2 domain; Inter 99.5 5.8E-14 1.3E-18 112.0 8.9 85 256-340 1-85 (85)
190 PLN03200 cellulose synthase-in 99.5 6.7E-14 1.4E-18 163.1 11.6 121 251-384 1977-2101(2102)
191 cd04037 C2E_Ferlin C2 domain f 99.5 1.2E-13 2.6E-18 118.9 10.3 88 413-505 1-93 (124)
192 cd04048 C2A_Copine C2 domain f 99.5 3.2E-13 6.9E-18 115.6 11.6 100 417-517 5-114 (120)
193 KOG1028 Ca2+-dependent phospho 99.5 4.4E-13 9.5E-18 138.2 14.7 135 369-532 149-296 (421)
194 cd00275 C2_PLC_like C2 domain 99.4 2.7E-12 5.9E-17 111.2 14.6 108 413-529 3-127 (128)
195 cd08374 C2F_Ferlin C2 domain s 99.4 7E-12 1.5E-16 107.5 11.2 95 256-350 2-125 (133)
196 cd04047 C2B_Copine C2 domain s 99.4 8.1E-12 1.8E-16 105.2 11.4 93 416-515 4-108 (110)
197 PLN02223 phosphoinositide phos 99.3 2.6E-11 5.7E-16 125.2 16.8 122 228-350 380-512 (537)
198 smart00239 C2 Protein kinase C 99.3 1E-11 2.3E-16 101.9 11.1 97 255-351 1-97 (101)
199 KOG1326 Membrane-associated pr 99.3 4.3E-12 9.3E-17 135.5 10.4 92 253-345 612-703 (1105)
200 KOG1011 Neurotransmitter relea 99.3 7.5E-12 1.6E-16 127.4 8.9 124 249-383 290-424 (1283)
201 cd00030 C2 C2 domain. The C2 d 99.3 3E-11 6.5E-16 98.8 10.8 100 256-357 1-101 (102)
202 PF00168 C2: C2 domain; Inter 99.3 1.4E-11 3E-16 98.1 8.2 79 414-497 1-85 (85)
203 KOG1011 Neurotransmitter relea 99.3 7.7E-12 1.7E-16 127.3 7.3 120 405-528 288-422 (1283)
204 PLN02952 phosphoinositide phos 99.2 2.4E-10 5.1E-15 120.8 16.9 128 228-359 440-580 (599)
205 PLN02270 phospholipase D alpha 99.2 1.6E-10 3.4E-15 124.3 14.1 128 253-388 7-153 (808)
206 PLN02230 phosphoinositide phos 99.2 3.5E-10 7.6E-15 119.3 15.4 123 228-351 439-574 (598)
207 KOG0169 Phosphoinositide-speci 99.2 1.9E-10 4.2E-15 121.0 12.7 167 184-352 536-721 (746)
208 cd00030 C2 C2 domain. The C2 d 99.1 5.2E-10 1.1E-14 91.4 11.3 97 414-515 1-102 (102)
209 PLN02270 phospholipase D alpha 99.1 5.3E-10 1.1E-14 120.3 14.3 115 411-532 7-150 (808)
210 KOG1326 Membrane-associated pr 99.1 3.7E-11 8.1E-16 128.5 5.5 89 411-504 612-705 (1105)
211 PLN02222 phosphoinositide phos 99.1 1.3E-09 2.8E-14 114.9 16.3 123 228-351 422-557 (581)
212 cd08374 C2F_Ferlin C2 domain s 99.1 2.8E-10 6.1E-15 97.7 9.3 90 414-507 2-125 (133)
213 PF10296 DUF2404: Putative int 99.1 4.8E-10 1E-14 90.4 9.6 85 75-160 1-89 (91)
214 smart00239 C2 Protein kinase C 99.1 1E-09 2.3E-14 89.8 11.1 89 414-507 2-96 (101)
215 PLN02228 Phosphoinositide phos 99.1 2.2E-09 4.8E-14 112.8 16.0 148 228-385 404-563 (567)
216 KOG1264 Phospholipase C [Lipid 99.0 1.8E-09 3.9E-14 113.0 11.8 152 228-388 1036-1194(1267)
217 KOG2059 Ras GTPase-activating 99.0 1.6E-09 3.5E-14 112.4 9.5 113 413-532 6-127 (800)
218 KOG1328 Synaptic vesicle prote 98.9 2.9E-10 6.4E-15 117.5 2.0 132 248-385 108-303 (1103)
219 PLN02223 phosphoinositide phos 98.9 2.2E-08 4.8E-13 103.8 14.6 112 410-529 407-536 (537)
220 cd08689 C2_fungal_Pkc1p C2 dom 98.9 3.5E-09 7.6E-14 85.2 6.6 86 256-349 1-89 (109)
221 KOG1327 Copine [Signal transdu 98.8 5.4E-08 1.2E-12 100.1 14.1 178 291-505 43-236 (529)
222 KOG1328 Synaptic vesicle prote 98.8 1.4E-09 3E-14 112.6 2.1 100 249-348 942-1049(1103)
223 PLN02952 phosphoinositide phos 98.8 9.8E-08 2.1E-12 101.2 14.7 111 411-529 469-598 (599)
224 cd08689 C2_fungal_Pkc1p C2 dom 98.7 4.7E-08 1E-12 78.8 8.4 81 414-505 1-88 (109)
225 PLN02352 phospholipase D epsil 98.7 1.4E-07 3.1E-12 101.6 12.1 121 252-388 8-135 (758)
226 PLN02230 phosphoinositide phos 98.7 2.7E-07 5.9E-12 97.7 13.5 112 410-529 467-597 (598)
227 KOG0905 Phosphoinositide 3-kin 98.7 4.2E-08 9.2E-13 106.7 7.5 117 370-517 1509-1635(1639)
228 PLN02222 phosphoinositide phos 98.7 4E-07 8.7E-12 96.3 14.6 111 411-529 451-580 (581)
229 KOG1031 Predicted Ca2+-depende 98.7 8.4E-08 1.8E-12 97.3 9.0 114 411-528 2-134 (1169)
230 KOG1031 Predicted Ca2+-depende 98.6 5.7E-08 1.2E-12 98.5 7.5 120 254-383 3-136 (1169)
231 PLN02352 phospholipase D epsil 98.5 8.8E-07 1.9E-11 95.7 12.7 109 411-532 9-132 (758)
232 PLN02228 Phosphoinositide phos 98.5 1.5E-06 3.3E-11 91.7 14.2 113 411-531 430-562 (567)
233 KOG0169 Phosphoinositide-speci 98.5 1.3E-06 2.8E-11 92.8 12.8 111 413-531 617-745 (746)
234 KOG1327 Copine [Signal transdu 98.5 5.7E-07 1.2E-11 92.6 9.8 172 176-348 43-236 (529)
235 cd08683 C2_C2cd3 C2 domain fou 98.4 7.6E-07 1.6E-11 74.0 6.7 102 414-515 1-143 (143)
236 KOG1264 Phospholipase C [Lipid 98.3 4.4E-06 9.5E-11 88.3 11.8 98 412-517 1065-1171(1267)
237 KOG0905 Phosphoinositide 3-kin 98.3 5.1E-07 1.1E-11 98.6 4.2 106 253-358 1523-1633(1639)
238 KOG1013 Synaptic vesicle prote 98.2 2.5E-06 5.5E-11 81.8 5.6 97 248-344 227-327 (362)
239 cd08684 C2A_Tac2-N C2 domain f 98.1 2.1E-06 4.7E-11 66.2 3.4 91 257-349 2-95 (103)
240 PF12416 DUF3668: Cep120 prote 98.0 0.0015 3.2E-08 65.3 22.2 232 256-506 2-296 (340)
241 PLN02964 phosphatidylserine de 97.8 3.3E-05 7.1E-10 83.1 6.2 92 249-349 49-140 (644)
242 KOG3837 Uncharacterized conser 97.7 4.3E-05 9.4E-10 75.4 5.5 118 410-530 365-503 (523)
243 KOG2060 Rab3 effector RIM1 and 97.6 0.0001 2.3E-09 72.1 5.9 104 410-518 267-380 (405)
244 cd08684 C2A_Tac2-N C2 domain f 97.6 5.5E-05 1.2E-09 58.5 3.0 92 416-514 3-102 (103)
245 PLN02964 phosphatidylserine de 97.6 0.00012 2.7E-09 78.8 6.4 100 410-518 52-154 (644)
246 cd08683 C2_C2cd3 C2 domain fou 97.3 0.00058 1.3E-08 57.2 6.3 101 256-356 1-141 (143)
247 PF15627 CEP76-C2: CEP76 C2 do 97.0 0.019 4.2E-07 50.4 12.6 120 409-532 6-152 (156)
248 KOG2060 Rab3 effector RIM1 and 97.0 0.00052 1.1E-08 67.4 3.1 108 252-360 267-379 (405)
249 PF12416 DUF3668: Cep120 prote 97.0 0.0071 1.5E-07 60.5 11.0 112 414-528 2-130 (340)
250 KOG3837 Uncharacterized conser 97.0 0.00099 2.2E-08 66.1 4.9 126 251-383 364-503 (523)
251 cd08398 C2_PI3K_class_I_alpha 96.8 0.033 7.2E-07 49.6 13.1 89 254-346 8-106 (158)
252 KOG1265 Phospholipase C [Lipid 96.6 0.0044 9.4E-08 67.1 7.1 115 228-350 672-798 (1189)
253 cd08398 C2_PI3K_class_I_alpha 96.3 0.028 6.1E-07 50.1 9.3 91 412-503 8-106 (158)
254 PF10358 NT-C2: N-terminal C2 96.3 0.24 5.2E-06 43.3 15.1 124 252-387 5-139 (143)
255 cd08693 C2_PI3K_class_I_beta_d 95.9 0.052 1.1E-06 49.3 8.9 92 412-503 8-120 (173)
256 cd08380 C2_PI3K_like C2 domain 95.8 0.19 4.1E-06 44.8 12.5 92 255-347 9-108 (156)
257 PF15627 CEP76-C2: CEP76 C2 do 95.7 0.15 3.2E-06 44.9 10.6 128 252-386 7-153 (156)
258 cd08693 C2_PI3K_class_I_beta_d 95.4 0.073 1.6E-06 48.3 8.2 91 254-346 8-120 (173)
259 PF10358 NT-C2: N-terminal C2 95.4 0.45 9.7E-06 41.6 13.0 115 412-531 7-136 (143)
260 cd08399 C2_PI3K_class_I_gamma 95.3 0.39 8.4E-06 43.6 12.3 73 255-328 11-88 (178)
261 cd08687 C2_PKN-like C2 domain 94.8 0.27 5.8E-06 38.8 8.4 84 275-382 9-92 (98)
262 KOG1452 Predicted Rho GTPase-a 94.8 0.074 1.6E-06 51.2 6.5 118 250-383 47-167 (442)
263 cd04012 C2A_PI3K_class_II C2 d 94.5 0.14 3.1E-06 46.3 7.5 93 254-346 8-119 (171)
264 cd08380 C2_PI3K_like C2 domain 94.4 0.21 4.6E-06 44.5 8.4 90 412-503 8-107 (156)
265 KOG1265 Phospholipase C [Lipid 94.4 0.072 1.6E-06 58.1 6.0 87 410-505 701-796 (1189)
266 cd08397 C2_PI3K_class_III C2 d 94.3 0.14 3E-06 45.7 6.8 74 273-346 28-107 (159)
267 KOG3532 Predicted protein kina 94.3 0.11 2.4E-06 55.1 6.8 218 58-285 81-358 (1051)
268 PF00792 PI3K_C2: Phosphoinosi 93.8 0.27 5.8E-06 43.1 7.5 55 292-346 23-85 (142)
269 cd08687 C2_PKN-like C2 domain 93.7 0.92 2E-05 35.9 9.3 83 430-529 9-92 (98)
270 cd08397 C2_PI3K_class_III C2 d 93.2 0.36 7.8E-06 43.1 7.4 71 429-503 29-107 (159)
271 PF15625 CC2D2AN-C2: CC2D2A N- 93.0 1.3 2.8E-05 40.0 10.8 72 274-349 36-109 (168)
272 cd08399 C2_PI3K_class_I_gamma 92.7 0.93 2E-05 41.2 9.3 91 413-503 11-122 (178)
273 cd08695 C2_Dock-B C2 domains f 92.4 1.2 2.7E-05 40.6 9.8 57 289-345 53-113 (189)
274 PF15625 CC2D2AN-C2: CC2D2A N- 92.2 2.6 5.7E-05 38.0 11.6 96 429-531 36-162 (168)
275 KOG1452 Predicted Rho GTPase-a 91.9 0.35 7.6E-06 46.8 5.8 113 409-529 48-166 (442)
276 PF14429 DOCK-C2: C2 domain in 91.0 2.4 5.3E-05 38.8 10.4 56 290-345 60-120 (184)
277 PF00792 PI3K_C2: Phosphoinosi 90.1 1.8 3.8E-05 37.9 8.3 56 444-503 23-85 (142)
278 cd08694 C2_Dock-A C2 domains f 89.8 3.3 7E-05 38.1 9.8 56 289-344 53-114 (196)
279 smart00142 PI3K_C2 Phosphoinos 89.5 1.9 4.1E-05 35.1 7.5 73 256-328 13-91 (100)
280 cd04012 C2A_PI3K_class_II C2 d 88.8 2 4.3E-05 38.9 7.8 93 411-503 7-119 (171)
281 cd08697 C2_Dock-D C2 domains f 87.9 10 0.00022 34.7 11.6 56 290-345 57-123 (185)
282 PTZ00447 apical membrane antig 84.0 12 0.00025 37.2 10.4 109 410-527 56-170 (508)
283 PF11618 DUF3250: Protein of u 82.4 8.7 0.00019 31.7 7.8 93 433-531 2-106 (107)
284 PF14429 DOCK-C2: C2 domain in 80.8 7.9 0.00017 35.4 8.0 60 442-502 60-120 (184)
285 PF11618 DUF3250: Protein of u 79.3 6.6 0.00014 32.4 6.1 84 291-383 13-105 (107)
286 cd08679 C2_DOCK180_related C2 78.4 6.7 0.00015 35.7 6.6 54 291-345 55-115 (178)
287 KOG1329 Phospholipase D1 [Lipi 77.2 6.1 0.00013 44.1 6.8 106 275-387 138-244 (887)
288 smart00142 PI3K_C2 Phosphoinos 76.8 14 0.0003 30.1 7.3 68 414-481 13-91 (100)
289 cd08696 C2_Dock-C C2 domains f 72.5 12 0.00027 34.0 6.5 57 289-345 54-118 (179)
290 cd08695 C2_Dock-B C2 domains f 72.1 15 0.00033 33.6 7.1 58 442-501 54-112 (189)
291 cd08694 C2_Dock-A C2 domains f 70.3 19 0.00041 33.1 7.2 60 442-501 54-114 (196)
292 KOG1329 Phospholipase D1 [Lipi 68.0 6.9 0.00015 43.7 4.6 98 428-531 136-241 (887)
293 KOG4269 Rac GTPase-activating 60.2 8.9 0.00019 42.7 3.6 74 248-328 753-828 (1112)
294 cd08696 C2_Dock-C C2 domains f 54.7 64 0.0014 29.4 7.7 62 441-502 54-118 (179)
295 KOG0694 Serine/threonine prote 50.7 3.7 8E-05 44.5 -1.1 68 275-346 28-95 (694)
296 cd08697 C2_Dock-D C2 domains f 50.5 86 0.0019 28.7 7.8 62 441-502 56-123 (185)
297 cd08679 C2_DOCK180_related C2 50.0 62 0.0013 29.3 7.0 59 444-502 55-115 (178)
298 KOG4092 Mitochondrial F1F0-ATP 47.9 8.6 0.00019 30.4 0.8 44 47-90 27-70 (108)
299 KOG0904 Phosphatidylinositol 3 46.9 55 0.0012 36.9 6.9 95 411-505 342-458 (1076)
300 PTZ00447 apical membrane antig 45.1 2.2E+02 0.0047 28.6 10.0 111 253-381 57-171 (508)
301 KOG0904 Phosphatidylinositol 3 44.9 90 0.002 35.3 8.1 70 255-327 344-421 (1076)
302 KOG2238 Uncharacterized conser 42.9 9 0.0002 42.1 0.4 91 69-160 334-428 (795)
303 KOG4027 Uncharacterized conser 42.1 1.7E+02 0.0036 25.9 7.7 72 273-344 24-109 (187)
304 PF07162 B9-C2: Ciliary basal 42.0 2.6E+02 0.0055 25.0 10.1 79 415-500 5-101 (168)
305 PF06219 DUF1005: Protein of u 38.6 4.7E+02 0.01 27.1 12.9 64 318-384 95-168 (460)
306 KOG2419 Phosphatidylserine dec 35.3 6.4 0.00014 42.1 -2.1 59 252-314 278-340 (975)
307 PF10409 PTEN_C2: C2 domain of 34.2 1.2E+02 0.0026 25.8 6.0 91 255-348 5-99 (134)
308 PF08693 SKG6: Transmembrane a 34.0 23 0.00049 23.5 1.0 13 21-33 26-38 (40)
309 PF14909 SPATA6: Spermatogenes 33.7 1.4E+02 0.003 25.9 6.1 74 427-505 17-101 (140)
310 PF10206 WRW: Mitochondrial F1 31.4 30 0.00064 28.3 1.6 36 55-90 35-70 (104)
311 PF10409 PTEN_C2: C2 domain of 30.4 2.4E+02 0.0052 23.9 7.3 74 427-504 22-98 (134)
312 PF07162 B9-C2: Ciliary basal 30.3 4E+02 0.0086 23.8 10.3 96 257-360 5-116 (168)
313 KOG0694 Serine/threonine prote 29.5 22 0.00048 38.8 0.7 50 429-481 27-77 (694)
314 PF15102 TMEM154: TMEM154 prot 27.4 69 0.0015 27.9 3.2 12 27-38 78-89 (146)
315 KOG0241 Kinesin-like protein [ 26.3 1.9E+02 0.0041 33.2 6.9 142 332-481 769-926 (1714)
316 PF14924 DUF4497: Protein of u 23.2 3.7E+02 0.008 22.1 6.8 57 472-529 30-103 (112)
317 KOG2419 Phosphatidylserine dec 22.9 26 0.00057 37.7 -0.2 70 410-480 278-354 (975)
318 PF15361 RIC3: Resistance to i 21.7 9.3 0.0002 33.8 -3.3 24 2-32 80-103 (152)
319 cd07469 CRD_TK_ROR_related Cys 21.3 1.9E+02 0.0041 25.3 4.7 39 66-104 27-66 (147)
320 KOG4269 Rac GTPase-activating 20.9 53 0.0012 37.0 1.6 69 408-481 755-828 (1112)
321 COG3887 Predicted signaling pr 20.8 13 0.00028 39.8 -2.9 40 44-83 69-109 (655)
No 1
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=100.00 E-value=3.6e-67 Score=558.40 Aligned_cols=489 Identities=26% Similarity=0.506 Sum_probs=411.0
Q ss_pred cccchhhhhcccchhhhhHhHhheeeeeEEecCCCCCcccccccc--CCHHHHHhhcCCCCCceeCCCCcchHHHHHHHH
Q 009539 2 GVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVE--RDSETLQQMLPEIPLWVKCPDYDRVDWLNKFLE 79 (532)
Q Consensus 2 ~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~p~w~~~~d~E~~~WlN~~l~ 79 (532)
|++||++|++||+++.++.+++.. +++|++..++.++.+|.+++ +..++++ .|+|++||||.+|+
T Consensus 165 ~v~Swifg~~~fs~~slffii~~~-~~vY~~~~~rv~rnird~v~~~~~~ek~~------------nd~ESveWLNtfL~ 231 (1227)
T COG5038 165 SVASWIFGYLGFSFASLFFIILVT-MYVYRTCIKRVRRNIRDLVQQELSEEKLE------------NDYESVEWLNTFLQ 231 (1227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhh------------cchhHHHHHHHHHH
Confidence 679999999999998777665443 56677777666677777653 3344444 79999999999999
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHhcCCCceeeeEEEeEeeCCCCCCeEeeEEEEec-CCceEEEEeeeeEeC--------
Q 009539 80 LMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTLGTLPPTFQGMKVYVT-DEKELIMEPCLKWAA-------- 150 (532)
Q Consensus 80 ~~Wp~~~~~~~~~i~~~~~~~l~~~~p~~~i~~~~~~~~~lG~~~p~i~~v~~~~~-~~~~~~ld~~~~~~~-------- 150 (532)
++||.++|.+++.|.+++|+.|+++.|+| |+++++++||||++||||.+||.|+. ..|.+.||++++|..
T Consensus 232 KfW~i~eP~iSqqV~dqvn~~la~~iPsF-I~~l~l~efTLGsk~PrI~~Irsyp~te~dtv~mD~~~sftP~d~sD~t~ 310 (1227)
T COG5038 232 KFWPIIEPSISQQVVDQVNQQLAEAIPSF-IDALALDEFTLGSKPPRIDGIRSYPSTESDTVVMDVDFSFTPHDISDVTA 310 (1227)
T ss_pred hheeccChHHHHHHHHHHHHHHHhhcchh-hhhhhhhhcccCCCCCceeeeeecCCCCCceEEEEeeeccCccchhhhhh
Confidence 99999999999999999999999999999 99999999999999999999999985 778999999999952
Q ss_pred -------CCceEEEEEE---ee-eEEEEEEEEEEEEEEeEEEecCCCCCCCeeeEEEEEccCCceEEEEEEEcc-----c
Q 009539 151 -------NPNVTIGVKA---FG-LKATVQVVDLQVFAQPRITLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVG-----A 214 (532)
Q Consensus 151 -------~~~i~l~~~~---~~-~~~~v~v~~~~~~g~~rv~l~pl~~~~P~~~~v~~sf~~~P~id~~~~~~g-----~ 214 (532)
|++|.|.++. +| +++||.|+|+.|.|++|++++ |++++|++..|+++|++.|.+||.++|+| .
T Consensus 311 ~~~r~~vn~kIsL~v~~Gk~~~~~~lPI~Vedl~f~g~~Rvr~~-L~~~~PfiktV~~~Lle~Pe~df~l~Plg~~~~g~ 389 (1227)
T COG5038 311 TSARASVNPKISLVVKKGKSFGSFTLPILVEDLFFKGRVRVRVE-LMSKYPFIKTVSFQLLEVPEFDFILVPLGGDFFGV 389 (1227)
T ss_pred HHHhhhcCcceeEEEEeeeeeeEEeccEEEEeeeeeEEEEEEEE-ecCCCcceeEEEEEEecCcceeEEEEEcCCCccce
Confidence 5678888765 45 899999999999999999999 99999999999999999999999999987 4
Q ss_pred cccCCchhhhhhh------ccceeeeCCcccccCCCCCcc-CCCCeEEEEEEEEEcCCCCcCC--CCCCCCcEEEEEEeC
Q 009539 215 DLMSIPGLYRFVQ------VANMYLWPKTLEVPILDPSKA-YRRPVGILHVKVVKAMNLKKKD--LLGASDPYVKLKITE 285 (532)
Q Consensus 215 ~~~~~P~l~~~i~------~~~~~v~P~~~~~~l~~~~~~-~~~~~g~L~V~v~~A~~L~~~d--~~g~~dpyv~v~~~~ 285 (532)
|++.+|||++|++ +.+|+++|+.+.+++.+.... ...+.|+|.|+|.+|++|...+ ..+..|||+++...+
T Consensus 390 dI~~iPGL~~fI~~~i~~~l~pml~~Pnsl~idi~~~m~~~s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~ 469 (1227)
T COG5038 390 DIFAIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQIMAGDSGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSD 469 (1227)
T ss_pred eEecCccHHHHHHHHHHhhcCCeeeCCceEEEcHHHhhccccCCeeEEEEEEEeeccCcccccccccCCCCceEEEEecc
Confidence 7999999999998 788999999999998543333 7789999999999999999988 568999999999765
Q ss_pred CcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCCCeeEEEEEeCccCCCCCCeEE-EEeccccccc
Q 009539 286 DKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVK-TLDLLKNMDL 364 (532)
Q Consensus 286 ~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~-~l~l~~~~~~ 364 (532)
... .||++++++.||+|||+|++.+... ++.|.++|||.+...+|+.+|.+.++|..|.....+.. ...+.
T Consensus 470 r~~--gkT~v~~nt~nPvwNEt~Yi~lns~-~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~----- 541 (1227)
T COG5038 470 RVI--GKTRVKKNTLNPVWNETFYILLNSF-TDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFL----- 541 (1227)
T ss_pred ccC--CccceeeccCCccccceEEEEeccc-CCceeEEEEeccccCCcceeeeEEechHHhhhccccccceeeee-----
Confidence 443 4999999999999999999999764 78999999999999999999999999999987754433 23332
Q ss_pred CCCCCCccccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC-C-CCCCEEEEEEcCee
Q 009539 365 NDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK-H-HTNPYARILFRGEE 442 (532)
Q Consensus 365 ~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~-~-~~dpyv~v~~~~~~ 442 (532)
.+.+..|+|+.++.|+|..++....... ..+....++|++.++++++++|... + ....+++++.+.+.
T Consensus 542 ---~~~k~vGrL~yDl~ffp~~e~k~~~~~s-------~e~~ed~n~GI~k~tl~~~~~l~~~~~~~~~~~a~l~~~~ke 611 (1227)
T COG5038 542 ---RNTKNVGRLTYDLRFFPVIEDKKELKGS-------VEPLEDSNTGILKVTLREVKALDELSSKKDNKSAELYTNAKE 611 (1227)
T ss_pred ---ccCccceEEEEeeeeecccCCccccccc-------cCCcccCCcceeEEEeeccccccCccccccceeEEEEecceE
Confidence 2578999999999999987764322111 0011123579999999999999753 2 33344899998887
Q ss_pred E-EEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCCCCCceeEEEEEechhhhccc-eeceEEEeCCCCC
Q 009539 443 R-KTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNK-RINEKYHLIDSKN 520 (532)
Q Consensus 443 ~-kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~-~~~~~~~L~~~~~ 520 (532)
. .|+..+.+.+|.||+.++-.+.+. ....+.+.+.|... .+.+|+...+|.+++... .--.||++. +++
T Consensus 612 V~st~~~k~t~~~~wn~~~~~~v~~~-~ns~~~~~~~d~~~-------g~~i~~~~~~l~~li~~t~dt~~~f~~~-~~k 682 (1227)
T COG5038 612 VYSTGKLKFTNHPSWNLQYNVLVTDR-KNSSIKVVTFDVQS-------GKVIATEGSTLPDLIDRTLDTFLVFPLR-NPK 682 (1227)
T ss_pred EeccceeeeccCCceeeecceEeccC-cceeEEEEeccccc-------CceeccccccchHhhhccccceEEEEcC-CCc
Confidence 6 558999999999999999999886 55678888888752 489999999999998864 446899986 679
Q ss_pred eEEEEEEEEEeC
Q 009539 521 GRIQIELQWRTA 532 (532)
Q Consensus 521 G~i~l~~~w~p~ 532 (532)
|+|.++..|+|.
T Consensus 683 g~I~~t~~W~Pi 694 (1227)
T COG5038 683 GRIFITNYWKPI 694 (1227)
T ss_pred ceEEEEecccee
Confidence 999999999994
No 2
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.1e-30 Score=267.86 Aligned_cols=222 Identities=29% Similarity=0.474 Sum_probs=190.8
Q ss_pred cCCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeC--CCCCEEEEEEE
Q 009539 248 AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRD--PESQAVELAVY 325 (532)
Q Consensus 248 ~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~v~ 325 (532)
.|+.....|.|+|++|++|+.+|..|.+||||++++.+.+..+.+|++.++|+||+|||+|.|.+.. .....|.+.||
T Consensus 161 ~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~ 240 (421)
T KOG1028|consen 161 QYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVY 240 (421)
T ss_pred EecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEE
Confidence 5777888999999999999999976789999999999988777899999999999999999999653 34789999999
Q ss_pred EccCCCCCCeeEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEEccCCCCCcccccccccccCCC
Q 009539 326 DWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPE 405 (532)
Q Consensus 326 d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~ 405 (532)
|+|++++|++||++.++|..+........|.++.+..... ....|+|.++++|.|.
T Consensus 241 ~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~----~~~~gel~~sL~Y~p~-------------------- 296 (421)
T KOG1028|consen 241 DFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDS----EELAGELLLSLCYLPT-------------------- 296 (421)
T ss_pred ecCCcccccEEEEEEecCccccccccceeeeccccccCCc----ccccceEEEEEEeecC--------------------
Confidence 9999999999999999999998887778898886543221 2223899999999984
Q ss_pred CCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEEcC-----eeEEEeeecCCCCCcccceEEEEecCCCCCC-eEEEE
Q 009539 406 NTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----EERKTKHVKKNRDPRWEEEFQFMLEEPPTND-RLHVE 476 (532)
Q Consensus 406 ~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~-----~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~-~l~v~ 476 (532)
.|.|+|.|.+|+||... +..||||++++.. +++||.+++++.||+|||+|.|.++.....+ .+.|+
T Consensus 297 -----~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~ 371 (421)
T KOG1028|consen 297 -----AGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELT 371 (421)
T ss_pred -----CCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEE
Confidence 79999999999999863 6789999999843 2459999999999999999999887543333 79999
Q ss_pred EEEccccccCCCCCceeEEEEEechh
Q 009539 477 VCSVSSRIGLLHPKETLGYIDINLSD 502 (532)
Q Consensus 477 V~d~~~~~~~~~~d~~lG~~~i~L~~ 502 (532)
|||++. ++.+++||++.+....
T Consensus 372 V~d~d~----~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 372 VWDHDT----LGSNDLIGRCILGSDS 393 (421)
T ss_pred EEEccc----ccccceeeEEEecCCC
Confidence 999986 7788899999998775
No 3
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.90 E-value=4.6e-23 Score=210.69 Aligned_cols=242 Identities=19% Similarity=0.299 Sum_probs=193.6
Q ss_pred EEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCC
Q 009539 254 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKH 333 (532)
Q Consensus 254 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d 333 (532)
..|.|+|.+|+||+..+..|.+||||.+.++...+ +||.++.+++.|.|.|+|+|.++.. -..|.|-|||.| +++|
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v--~RT~tv~ksL~PF~gEe~~~~iP~~-F~~l~fYv~D~d-~~~D 80 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEV--CRTATVEKSLCPFFGEEFYFEIPRT-FRYLSFYVWDRD-LKRD 80 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecchhh--hhhhhhhhhcCCccccceEEecCcc-eeeEEEEEeccc-cccc
Confidence 46899999999999999999999999999997665 6999999999999999999999753 578999999999 9999
Q ss_pred CeeEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceE
Q 009539 334 DKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGL 413 (532)
Q Consensus 334 ~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 413 (532)
+.||.+.|.-++|....+.+.|+.|.+ .++ +....|++++++.+.+.... .-
T Consensus 81 ~~IGKvai~re~l~~~~~~d~W~~L~~-VD~----dsEVQG~v~l~l~~~e~~~~-----------------------~~ 132 (800)
T KOG2059|consen 81 DIIGKVAIKREDLHMYPGKDTWFSLQP-VDP----DSEVQGKVHLELALTEAIQS-----------------------SG 132 (800)
T ss_pred cccceeeeeHHHHhhCCCCccceeccc-cCC----ChhhceeEEEEEEeccccCC-----------------------Cc
Confidence 999999999999998888888998743 332 57899999999999875332 11
Q ss_pred EEEEEeeeecC-CC-CCCCCCEEEEEEcCee----EEEeeecCCCCCcccceEEEEecCC-----------C---CCCeE
Q 009539 414 LVVIVHEAQDV-EG-KHHTNPYARILFRGEE----RKTKHVKKNRDPRWEEEFQFMLEEP-----------P---TNDRL 473 (532)
Q Consensus 414 L~v~i~~a~~L-~~-~~~~dpyv~v~~~~~~----~kT~vv~~t~nP~w~e~f~f~v~~~-----------~---~~~~l 473 (532)
+...+.+++++ |. ++.+|||+++...+.. ++|+++++|.+|.|+|.|.|.+... + ..-.|
T Consensus 133 ~~c~~L~~r~~~P~~~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~i 212 (800)
T KOG2059|consen 133 LVCHVLKTRQGLPIINGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEI 212 (800)
T ss_pred chhhhhhhcccCceeCCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeE
Confidence 12223334444 33 4679999999987654 4999999999999999999998753 1 12268
Q ss_pred EEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCC----------CCeEEEEEEEEE
Q 009539 474 HVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDS----------KNGRIQIELQWR 530 (532)
Q Consensus 474 ~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~----------~~G~i~l~~~w~ 530 (532)
.+++|++... ...+.++|++.+++..+........||.|... .-|.+++.+.+.
T Consensus 213 rv~lW~~~~~---~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~ 276 (800)
T KOG2059|consen 213 RVDLWNDLNL---VINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYT 276 (800)
T ss_pred EEeeccchhh---hhhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEee
Confidence 8889985432 44599999999999988866677899999532 137888877664
No 4
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.88 E-value=7.4e-22 Score=167.76 Aligned_cols=119 Identities=21% Similarity=0.375 Sum_probs=102.2
Q ss_pred eEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCC-CCCceeecEEEEEeeCCCCCEEEEEEEEccCCC
Q 009539 253 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHK-NLNPEWNEEYNFTVRDPESQAVELAVYDWEQVG 331 (532)
Q Consensus 253 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~-t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~ 331 (532)
.|.|.|+|++|++++..+ .|++||||++.+++++. +|+++.+ +.||+|||+|.|.+.+. ...|.|+|||+|.++
T Consensus 1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~---kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~~ 75 (121)
T cd04016 1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVY---ETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAFT 75 (121)
T ss_pred CcEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEE---EeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCCc
Confidence 489999999999998877 79999999999987653 8998865 89999999999999764 478999999999999
Q ss_pred CCCeeEEEEEeCc-cCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEE
Q 009539 332 KHDKMGMNVVPLK-ELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY 382 (532)
Q Consensus 332 ~d~~iG~~~i~l~-~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~ 382 (532)
+|++||++.+++. .+..++..+.|++|.+. ++....|+|+|+++|
T Consensus 76 ~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~------~~~~~~g~i~l~l~y 121 (121)
T cd04016 76 MDERIAWTHITIPESVFNGETLDDWYSLSGK------QGEDKEGMINLVFSY 121 (121)
T ss_pred CCceEEEEEEECchhccCCCCccccEeCcCc------cCCCCceEEEEEEeC
Confidence 9999999999996 57777778889988531 234578999999987
No 5
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.84 E-value=3.1e-20 Score=159.52 Aligned_cols=121 Identities=29% Similarity=0.487 Sum_probs=106.6
Q ss_pred EEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCCC
Q 009539 255 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHD 334 (532)
Q Consensus 255 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~ 334 (532)
.|+|+|++|++|+..|..|.+||||++++++.. .++|+++.++.||+|||+|.|.+.++ .+.|.|+|||++..++|+
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~--~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~~~ 77 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKT--VYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLTDD 77 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEE--EEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCCCc
Confidence 489999999999999988999999999997633 36899999999999999999998765 578999999999998999
Q ss_pred eeEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEE
Q 009539 335 KMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP 384 (532)
Q Consensus 335 ~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p 384 (532)
+||++.++++++..+...+.|++|... ++.+..|+|++.++|.|
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~~~~L~~~------~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 78 FMGSAFVDLSTLELNKPTEVKLKLEDP------NSDEDLGYISLVVTLTP 121 (121)
T ss_pred ceEEEEEEHHHcCCCCCeEEEEECCCC------CCccCceEEEEEEEECC
Confidence 999999999999998889999988431 22468999999999875
No 6
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.84 E-value=2.7e-20 Score=161.03 Aligned_cols=119 Identities=27% Similarity=0.481 Sum_probs=100.9
Q ss_pred EEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeC-----CCCCEEEEEEEEccCC
Q 009539 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRD-----PESQAVELAVYDWEQV 330 (532)
Q Consensus 256 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~-----~~~~~L~v~v~d~d~~ 330 (532)
++|+|++|+||+.++..|.+||||++++++.+ ++|++++++.||+|||+|.|.+.. +....|.++|||++.+
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~---~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~ 77 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEK---YSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLL 77 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCee---eeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcccc
Confidence 57999999999999988999999999998644 489999999999999999999976 3467899999999998
Q ss_pred CCCCeeEEEEEeCccCC--CCCCeEEEEecccccccCCCCCCccccEEEEEEE
Q 009539 331 GKHDKMGMNVVPLKELT--PEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFI 381 (532)
Q Consensus 331 ~~d~~iG~~~i~l~~l~--~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~ 381 (532)
++|++||++.++++++. .+.....|++|.... .+..+.+|+|+++++
T Consensus 78 ~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~----~~~~~~~Gei~l~~~ 126 (126)
T cd08682 78 GLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKP----GKDDKERGEIEVDIQ 126 (126)
T ss_pred CCCceeEEEEEEHHHhhccCCCcccEEEECcCCC----CCCccccceEEEEeC
Confidence 89999999999999987 555677888885321 123567899999873
No 7
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.84 E-value=2.7e-20 Score=159.19 Aligned_cols=117 Identities=30% Similarity=0.443 Sum_probs=101.0
Q ss_pred EEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeC-CCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCC
Q 009539 254 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKH-KNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGK 332 (532)
Q Consensus 254 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~-~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~ 332 (532)
|.|+|+|++|++|+..+..|++||||++++++.. ++|+++. ++.||+|||+|.|.+.....+.|.|+|||++..+
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~---~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~- 76 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVT---KKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK- 76 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCc---cccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-
Confidence 6899999999999999988999999999998744 4788764 5899999999999998766789999999998776
Q ss_pred CCeeEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEE
Q 009539 333 HDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY 382 (532)
Q Consensus 333 d~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~ 382 (532)
|++||++.+++.++..+.....|++|.. .++..|+|+++++|
T Consensus 77 ~~~iG~~~~~l~~~~~~~~~~~w~~L~~--------~~~~~G~i~l~l~f 118 (118)
T cd08681 77 PDLIGDTEVDLSPALKEGEFDDWYELTL--------KGRYAGEVYLELTF 118 (118)
T ss_pred CcceEEEEEecHHHhhcCCCCCcEEecc--------CCcEeeEEEEEEEC
Confidence 9999999999999877666677887743 24689999999986
No 8
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.83 E-value=7.4e-20 Score=155.48 Aligned_cols=112 Identities=23% Similarity=0.441 Sum_probs=97.6
Q ss_pred eEEEEEEeeeecCCCC--CCCCCEEEEEEcCeeEEEeeecC-CCCCcccceEEEEecCCCCCCeEEEEEEEccccccCCC
Q 009539 412 GLLVVIVHEAQDVEGK--HHTNPYARILFRGEERKTKHVKK-NRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLH 488 (532)
Q Consensus 412 g~L~v~i~~a~~L~~~--~~~dpyv~v~~~~~~~kT~vv~~-t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~ 488 (532)
|.|.|+|++|++++.. +.+||||++.+++++.+|+++++ +.||+|||+|+|.+... ...+.|+|||++. ++
T Consensus 2 g~L~v~v~~Ak~l~~~~~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~--~~~l~~~V~d~d~----~~ 75 (121)
T cd04016 2 GRLSITVVQAKLVKNYGLTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEG--VDSIYIEIFDERA----FT 75 (121)
T ss_pred cEEEEEEEEccCCCcCCCCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCC--CcEEEEEEEeCCC----Cc
Confidence 7899999999988653 78999999999999999999876 79999999999999753 3579999999986 67
Q ss_pred CCceeEEEEEech-hhhccceeceEEEeCC----CCCeEEEEEEEE
Q 009539 489 PKETLGYIDINLS-DVVSNKRINEKYHLID----SKNGRIQIELQW 529 (532)
Q Consensus 489 ~d~~lG~~~i~L~-~l~~~~~~~~~~~L~~----~~~G~i~l~~~w 529 (532)
.|++||++.+++. .+..++..+.||+|.+ ...|+|+|++.|
T Consensus 76 ~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 76 MDERIAWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred CCceEEEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEeC
Confidence 8999999999996 4666667899999976 346999999875
No 9
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.83 E-value=8.2e-20 Score=156.38 Aligned_cols=116 Identities=31% Similarity=0.509 Sum_probs=102.3
Q ss_pred EEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCCCe
Q 009539 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDK 335 (532)
Q Consensus 256 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~ 335 (532)
|+|+|++|++|++.+..|.+||||++++.+.....++|++++++.||+|||+|.|.+.....+.|.|+|||++.. +|++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~ 80 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH 80 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence 789999999999998889999999999975433456999999999999999999999766567899999999988 8999
Q ss_pred eEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEE
Q 009539 336 MGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY 382 (532)
Q Consensus 336 iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~ 382 (532)
||++.+++.++..+.....|+++. .+..|+|++++.+
T Consensus 81 iG~~~~~l~~l~~g~~~~~~~~L~----------~~~~g~l~~~~~~ 117 (119)
T cd04036 81 LGTVLFDVSKLKLGEKVRVTFSLN----------PQGKEELEVEFLL 117 (119)
T ss_pred cEEEEEEHHHCCCCCcEEEEEECC----------CCCCceEEEEEEe
Confidence 999999999999988889999882 3468999998865
No 10
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.83 E-value=2.5e-19 Score=193.36 Aligned_cols=275 Identities=23% Similarity=0.388 Sum_probs=206.0
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEcc
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWE 328 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d 328 (532)
++.+.|.++|+|..|.+|.+....|++|||+++.+++.. ++||-....+.||.|||..+.++..+ .+.+.++++|++
T Consensus 706 ~~~pIg~irv~v~~andl~n~i~g~~~dPya~v~~n~~~--k~rti~~~~~~npiw~~i~Yv~v~sk-~~r~~l~~~~~~ 782 (1227)
T COG5038 706 YDTPIGAIRVSVRKANDLRNEIPGGKSDPYATVLVNNLV--KYRTIYGSSTLNPIWNEILYVPVTSK-NQRLTLECMDYE 782 (1227)
T ss_pred ecCccceEEEEeehhhcccccccCcccccceEEEeccee--EEEEecccCccccceeeeEEEEecCC-ccEEeeeeecch
Confidence 678999999999999999988888999999999998643 47999999999999999999999876 577999999999
Q ss_pred CCCCCCeeEEEEEeCccCCCCCCeE---EEEecccccccCCCCCCccccEEEEEEEEEEccCCCCC--------------
Q 009539 329 QVGKHDKMGMNVVPLKELTPEEPSV---KTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLP-------------- 391 (532)
Q Consensus 329 ~~~~d~~iG~~~i~l~~l~~~~~~~---~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~-------------- 391 (532)
..+.|..+|++.++++++....... .+..-.....+-...+....|++.+.+.|+|..-.-..
T Consensus 783 ~sgddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~l~~~~~~~~~tit~~~~f~p~~i~~s~ee~~~~~k~~~e~~ 862 (1227)
T COG5038 783 ESGDDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLSLTGKKVKGTITYKCRFYPAVIVLSLEEVRYVDKVSSEKR 862 (1227)
T ss_pred hccccceeceeeeeeeeeeecCCCcceEEeecCcccccccccccCCcceeEEEEEEEEeecccCChHHhcchhhhhhHHH
Confidence 9999999999999999987632211 11111000111111136788999999999996321000
Q ss_pred ----------c----------------------c---------c-------------------------------cc-cc
Q 009539 392 ----------K----------------------S---------F-------------------------------EE-SQ 398 (532)
Q Consensus 392 ----------~----------------------~---------~-------------------------------~~-~~ 398 (532)
+ + . ++ ..
T Consensus 863 ~~~~~~~~l~ek~~~~~D~~~~~~e~~~v~~~~d~~~~k~k~~lne~lq~~sgv~~i~i~~g~l~~~~~~l~~f~Dd~~~ 942 (1227)
T COG5038 863 KSEKRKSALDEKTISLVDKEDSVEESIEVEELTDMYSLKPKLDLNEALQYKSGVLGIQILSGELPDPGQYLQIFFDDASH 942 (1227)
T ss_pred HhhhhhcccCccccchhccccchhcceeeccccchhhcchhhhhhhhhcccCCceEEEEEEeecCCcceEEEEEecCCCC
Confidence 0 0 0 00 00
Q ss_pred c---cc------------------------------c-CCCC--------------------------------------
Q 009539 399 T---VQ------------------------------K-APEN-------------------------------------- 406 (532)
Q Consensus 399 ~---~~------------------------------~-~~~~-------------------------------------- 406 (532)
. .. + ++..
T Consensus 943 ~~i~s~~~~t~~~~~~~~g~~~ireL~~s~~tfrv~K~a~~~dk~v~e~t~~t~~lvs~~~~kp~~ln~~g~~~~~v~~~ 1022 (1227)
T COG5038 943 PQIVSSKAPTRGERNGESGDTFIRELEYSETTFRVTKNAKKSDKVVCEVTLPTLDLVSNAYEKPSSLNFPGSAKVLVQVS 1022 (1227)
T ss_pred ceeeccCCcccccccchhhhhhhhhhccceEEEEeccCCcccCceeeecccchhHHHHHhhCCCcEEecCCCceEEEEEE
Confidence 0 00 0 0000
Q ss_pred ------------CCCCceEEEEEEeeeecCCCC---CCCCCEEEEEEcCe-eEEEeeecCCCCCcccceEEEEecCCCCC
Q 009539 407 ------------TPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRGE-ERKTKHVKKNRDPRWEEEFQFMLEEPPTN 470 (532)
Q Consensus 407 ------------~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~~-~~kT~vv~~t~nP~w~e~f~f~v~~~~~~ 470 (532)
.-.++|.|.|.+.+|.||+.. +.+||||++.++++ .++|+++++++||+|||.|+..+.+. ..
T Consensus 1023 ~tPv~~~l~~~emv~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r-~~ 1101 (1227)
T COG5038 1023 YTPVPVKLPPVEMVENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNR-VK 1101 (1227)
T ss_pred EeecccccCcceeecccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeecc-cc
Confidence 012578899999999999873 56999999999998 57999999999999999999999876 56
Q ss_pred CeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCCC----CeEEEEEEEEEe
Q 009539 471 DRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK----NGRIQIELQWRT 531 (532)
Q Consensus 471 ~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~----~G~i~l~~~w~p 531 (532)
+.+.+.|+|++.. .+++.||.+.++|+.+..+...+...+|.+.. +|.++....++|
T Consensus 1102 D~~~i~v~Dwd~~----~knd~lg~~~idL~~l~~~~~~n~~i~ldgk~~~~~~g~~~~~~~~r~ 1162 (1227)
T COG5038 1102 DVLTINVNDWDSG----EKNDLLGTAEIDLSKLEPGGTTNSNIPLDGKTFIVLDGTLHPGFNFRS 1162 (1227)
T ss_pred ceEEEEEeecccC----CCccccccccccHhhcCcCCccceeeeccCcceEecccEeecceecch
Confidence 7899999999863 67999999999999998877766666776543 466666666654
No 11
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.83 E-value=9.5e-20 Score=159.07 Aligned_cols=121 Identities=30% Similarity=0.496 Sum_probs=103.3
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEcc
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWE 328 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d 328 (532)
.....|.|+|+|++|++|+..|..|.+||||+++++... .+|++++++.||.|||+|.|.+.++..+.|.++|||++
T Consensus 10 ~~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~---~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d 86 (136)
T cd08375 10 RASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQE---HKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRD 86 (136)
T ss_pred CCCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEe---eeccccCCCCCCccCceEEEEecCccCCEEEEEEEECC
Confidence 455789999999999999999988999999999997544 59999999999999999999998776789999999999
Q ss_pred CCCCCCeeEEEEEeCccCCCCC-----CeEEEEecccccccCCCCCCccccEEEEEEEE
Q 009539 329 QVGKHDKMGMNVVPLKELTPEE-----PSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY 382 (532)
Q Consensus 329 ~~~~d~~iG~~~i~l~~l~~~~-----~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~ 382 (532)
..++|++||++.+++.++.... ....++.+ .....|+|++++.+
T Consensus 87 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~----------~~~~~g~i~l~~~~ 135 (136)
T cd08375 87 FFSPDDFLGRTEIRVADILKETKESKGPITKRLLL----------HEVPTGEVVVKLDL 135 (136)
T ss_pred CCCCCCeeEEEEEEHHHhccccccCCCcEEEEecc----------ccccceeEEEEEEe
Confidence 9999999999999999998622 12233332 36788999999976
No 12
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.83 E-value=8.4e-20 Score=155.65 Aligned_cols=115 Identities=30% Similarity=0.510 Sum_probs=103.0
Q ss_pred EEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCCC
Q 009539 255 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHD 334 (532)
Q Consensus 255 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~ 334 (532)
+++|+|++|++|+..+..|.+||||++++++.. .+|+++++|.||.|||+|.|.+.+...+.|.++|||++..++|+
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~---~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~ 77 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEK---YKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDE 77 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEe---EecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 478999999999999988999999999997543 58999999999999999999998766789999999999988999
Q ss_pred eeEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEE
Q 009539 335 KMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK 383 (532)
Q Consensus 335 ~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~ 383 (532)
+||++.+++.++..+.....|++|. ...|+|++.+.|.
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~w~~L~-----------~~~G~~~~~~~~~ 115 (116)
T cd08376 78 FIGRCEIDLSALPREQTHSLELELE-----------DGEGSLLLLLTLT 115 (116)
T ss_pred eEEEEEEeHHHCCCCCceEEEEEcc-----------CCCcEEEEEEEec
Confidence 9999999999999988899999882 2369999998773
No 13
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.83 E-value=9.9e-20 Score=154.33 Aligned_cols=107 Identities=27% Similarity=0.443 Sum_probs=92.2
Q ss_pred EEEEEEEcCCCCcCCCCCCCCcEEEEEEeC----CcCCceeeEeeCCCCCceeecEEEEEeeC---CCCCEEEEEEEEcc
Q 009539 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITE----DKLPSKKTTVKHKNLNPEWNEEYNFTVRD---PESQAVELAVYDWE 328 (532)
Q Consensus 256 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~----~~~~~~~T~v~~~t~nP~Wne~f~f~v~~---~~~~~L~v~v~d~d 328 (532)
|+|+|++|++|+..+ .|.+||||++++.+ .+.++++|+++++|+||+|||+|.|.+.. +....|.|.|||+|
T Consensus 2 L~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d 80 (120)
T cd08395 2 VTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC 80 (120)
T ss_pred EEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence 899999999999988 49999999999853 33334689999999999999999999974 23467999999999
Q ss_pred CCCCCCeeEEEEEeCccCCCCCCeEEEEecccccc
Q 009539 329 QVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMD 363 (532)
Q Consensus 329 ~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~ 363 (532)
..++|++||++.++++++..++....|++|.+...
T Consensus 81 ~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~~~ 115 (120)
T cd08395 81 FARDDRLVGVTVLQLRDIAQAGSCACWLPLGRRIH 115 (120)
T ss_pred ccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCccc
Confidence 88889999999999999999988889999865443
No 14
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.83 E-value=3.3e-20 Score=154.94 Aligned_cols=107 Identities=18% Similarity=0.325 Sum_probs=90.1
Q ss_pred cCCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeC-CcCCceeeEeeCCCCCceeecEEEEEeeCC--CCCEEEEEE
Q 009539 248 AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITE-DKLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAV 324 (532)
Q Consensus 248 ~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~-~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v 324 (532)
.|+...|.|+|+|++|++|+ . .|.+||||++++.+ .+..+++|+++++|+||+|||+|.|.+... ....|.|+|
T Consensus 8 ~Y~~~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V 84 (118)
T cd08677 8 SYDKQKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTL 84 (118)
T ss_pred EEcCcCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEE
Confidence 35566799999999999998 3 36799999999975 344567999999999999999999998643 367899999
Q ss_pred EEccCCCCCCeeEEEEEeCccCCCCCCeEEEEe
Q 009539 325 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLD 357 (532)
Q Consensus 325 ~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~ 357 (532)
||+|+++++++||++.++++++..+...++|.+
T Consensus 85 ~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~ 117 (118)
T cd08677 85 RCCDRFSRHSTLGELRLKLADVSMMLGAAQWVD 117 (118)
T ss_pred EeCCCCCCCceEEEEEEccccccCCccccchhc
Confidence 999999999999999999998866655556654
No 15
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.83 E-value=5.8e-20 Score=153.49 Aligned_cols=113 Identities=22% Similarity=0.249 Sum_probs=96.5
Q ss_pred cEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCCCCCCCEEEEEEcC----eeEEEeeec
Q 009539 374 GQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGKHHTNPYARILFRG----EERKTKHVK 449 (532)
Q Consensus 374 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~~~~dpyv~v~~~~----~~~kT~vv~ 449 (532)
|+|+++++|.|. .+.|+|+|++|+||+..+.+||||++++.. .+++|++.+
T Consensus 1 ~~l~fsL~Y~~~-------------------------~~~L~V~vikA~~L~~~g~sDPYVKv~L~~~~k~~k~kT~v~r 55 (118)
T cd08677 1 PKLHYSLSYDKQ-------------------------KAELHVNILEAENISVDAGCECYISGCVSVSEGQKEAQTALKK 55 (118)
T ss_pred CeEEEEEEEcCc-------------------------CCEEEEEEEEecCCCCCCCCCeEEEEEEcCCcCccEEEcceec
Confidence 579999999874 789999999999999777899999999964 356999999
Q ss_pred CCCCCcccceEEEEecCCCC-CCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEe
Q 009539 450 KNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHL 515 (532)
Q Consensus 450 ~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L 515 (532)
+|.||+|||+|.|.+..... ...|.++|||+|+ ++++++||++.++|+++.......+|-+|
T Consensus 56 ktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Dr----fs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 56 LALHTQWEEELVFPLPEEESLDGTLTLTLRCCDR----FSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred CCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCC----CCCCceEEEEEEccccccCCccccchhcC
Confidence 99999999999999876433 2379999999997 78999999999999987555555677654
No 16
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.82 E-value=1.9e-19 Score=153.98 Aligned_cols=116 Identities=28% Similarity=0.421 Sum_probs=99.0
Q ss_pred EEEEEEEEcCC---CCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCC
Q 009539 255 ILHVKVVKAMN---LKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVG 331 (532)
Q Consensus 255 ~L~V~v~~A~~---L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~ 331 (532)
.|+|+|++|++ |+.+|..|.+||||++++++++. ||++++++.||+|||+|.|.+.++ ...|.|+|||++..+
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~---rTk~~~~~~nP~WnE~f~f~v~~~-~~~l~v~V~d~d~~~ 76 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWV---RTRTVEDSSNPRWNEQYTWPVYDP-CTVLTVGVFDNSQSH 76 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEe---EcCcccCCCCCcceeEEEEEecCC-CCEEEEEEEECCCcc
Confidence 38999999999 88899999999999999987653 899999999999999999999875 468999999998763
Q ss_pred ------CCCeeEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEE
Q 009539 332 ------KHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVV 378 (532)
Q Consensus 332 ------~d~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l 378 (532)
+|++||++.++++++..+.....|++|... + .++.+..|+|+.
T Consensus 77 ~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~-~---~~~~~~~g~l~~ 125 (126)
T cd08379 77 WKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSL-N---PSGVKKMGELEC 125 (126)
T ss_pred ccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeC-C---CCCccCCcEEEe
Confidence 899999999999999988888889988532 1 123567788764
No 17
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.81 E-value=8.4e-20 Score=158.06 Aligned_cols=99 Identities=46% Similarity=0.751 Sum_probs=91.6
Q ss_pred CCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCC
Q 009539 251 RPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQV 330 (532)
Q Consensus 251 ~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~ 330 (532)
...|.|+|+|++|.||..+|..+++||||.+.+++++. +|+++++++||+|||+|.|.+.++ ...|++.|||+|.+
T Consensus 3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~l---kT~~v~~n~NPeWNe~ltf~v~d~-~~~lkv~VyD~D~f 78 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKL---KTRVVYKNLNPEWNEELTFTVKDP-NTPLKVTVYDKDTF 78 (168)
T ss_pred ccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeee---eeeeecCCCCCcccceEEEEecCC-CceEEEEEEeCCCC
Confidence 46799999999999999999889999999999998876 899999999999999999999987 68999999999999
Q ss_pred CCCCeeEEEEEeCccCCCCCCeE
Q 009539 331 GKHDKMGMNVVPLKELTPEEPSV 353 (532)
Q Consensus 331 ~~d~~iG~~~i~l~~l~~~~~~~ 353 (532)
++||+||.|+|+|..+.......
T Consensus 79 s~dD~mG~A~I~l~p~~~~~~~~ 101 (168)
T KOG1030|consen 79 SSDDFMGEATIPLKPLLEAQKMD 101 (168)
T ss_pred CcccccceeeeccHHHHHHhhhh
Confidence 99999999999999998765444
No 18
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.81 E-value=3.6e-19 Score=157.82 Aligned_cols=129 Identities=22% Similarity=0.318 Sum_probs=106.2
Q ss_pred EEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCC-CCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCC
Q 009539 255 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHK-NLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKH 333 (532)
Q Consensus 255 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~-t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d 333 (532)
.|+|+|++|++|+..+..|.+||||+++++++. .+|+++.+ +.||+|||+|.|.+.++..+.|.|+|||++..++|
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~---~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~d 77 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQV---LRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKD 77 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEE---eeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCC
Confidence 389999999999999999999999999998744 48888866 69999999999999876667999999999988889
Q ss_pred CeeEEEEEeCccCCCC----CCeEEEEeccccccc-CCCCCCccccEEEEEEEEEEcc
Q 009539 334 DKMGMNVVPLKELTPE----EPSVKTLDLLKNMDL-NDGQNEKSRGQLVVEFIYKPFK 386 (532)
Q Consensus 334 ~~iG~~~i~l~~l~~~----~~~~~~l~l~~~~~~-~~~~~~~~~G~l~l~l~~~p~~ 386 (532)
++||++.++|+++..+ .....|++|...... .+++..+.+|+|+|+++|.+..
T Consensus 78 d~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~ 135 (150)
T cd04019 78 EPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGY 135 (150)
T ss_pred CeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCcc
Confidence 9999999999998753 345788888654211 1123457789999999998643
No 19
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.80 E-value=5e-19 Score=152.49 Aligned_cols=122 Identities=26% Similarity=0.475 Sum_probs=104.5
Q ss_pred EEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCCC
Q 009539 255 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHD 334 (532)
Q Consensus 255 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~ 334 (532)
.|+|+|++|++|+..+..|.+||||++++++.. .+|++++++.||+|||+|.|.+.......|.|+|||++..++++
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~---~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~ 77 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQT---LETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKND 77 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEE---EeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 389999999999999988899999999997544 58999999999999999999998766678999999999999999
Q ss_pred eeEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEE
Q 009539 335 KMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEF 380 (532)
Q Consensus 335 ~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l 380 (532)
+||++.+++.++..+.....|+++.+... .....++..|.|++.+
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~w~~L~~~~~-~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 78 FLGKVVFSIQTLQQAKQEEGWFRLLPDPR-AEEESGGNLGSLRLKV 122 (123)
T ss_pred EeEEEEEEHHHcccCCCCCCEEECCCCCC-CCccccCceEEEEEEe
Confidence 99999999999987766778888865432 2233577899998876
No 20
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.80 E-value=6.4e-19 Score=151.42 Aligned_cols=112 Identities=30% Similarity=0.553 Sum_probs=100.8
Q ss_pred eEEEEEEeeeecCCCC---------CCCCCEEEEEEcCeeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccc
Q 009539 412 GLLVVIVHEAQDVEGK---------HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSS 482 (532)
Q Consensus 412 g~L~v~i~~a~~L~~~---------~~~dpyv~v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~ 482 (532)
|+|+|+|++|+||+.. +.+||||+++++++..+|++++++.||.|||.|+|.+... ..+.+.++|||++.
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~-~~~~l~i~v~d~~~ 79 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEV-PGQELEIELFDEDP 79 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCC-CCCEEEEEEEecCC
Confidence 6799999999999853 4689999999999889999999999999999999999764 45689999999975
Q ss_pred cccCCCCCceeEEEEEechhhhccceeceEEEeCCCCCeEEEEEEEE
Q 009539 483 RIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIELQW 529 (532)
Q Consensus 483 ~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~l~~~w 529 (532)
. .+++||++.++|+++..+....+||+|.+..+|+|+|+++|
T Consensus 80 ----~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~G~~~~~~~~ 121 (121)
T cd08391 80 ----D-KDDFLGRLSIDLGSVEKKGFIDEWLPLEDVKSGRLHLKLEW 121 (121)
T ss_pred ----C-CCCcEEEEEEEHHHhcccCccceEEECcCCCCceEEEEEeC
Confidence 3 78999999999999988777889999998789999999998
No 21
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.80 E-value=6.7e-19 Score=151.99 Aligned_cols=122 Identities=31% Similarity=0.497 Sum_probs=101.3
Q ss_pred eEEEEEEEEEcCCCCcCCC-CCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCC
Q 009539 253 VGILHVKVVKAMNLKKKDL-LGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVG 331 (532)
Q Consensus 253 ~g~L~V~v~~A~~L~~~d~-~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~ 331 (532)
.|.|+|+|++|++|+..+. .+.+||||++++++. ...++|++++++.||.|||.|.|.+. ...+.|.|+|||++..+
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~-~~~~kT~~~~~~~~P~Wne~~~~~v~-~~~~~l~~~v~d~~~~~ 78 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR-RELARTKVKKDTSNPVWNETKYILVN-SLTEPLNLTVYDFNDKR 78 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCC-CcceEeeeecCCCCCcceEEEEEEeC-CCCCEEEEEEEecCCCC
Confidence 4899999999999997653 467899999999873 23469999999999999999999987 34789999999999888
Q ss_pred CCCeeEEEEEeCccCCCCCCeE-EEEecccccccCCCCCCccccEEEEEEEEEE
Q 009539 332 KHDKMGMNVVPLKELTPEEPSV-KTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP 384 (532)
Q Consensus 332 ~d~~iG~~~i~l~~l~~~~~~~-~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p 384 (532)
+|++||++.+++.++....... .+..+. .+++..|+|+++++|.|
T Consensus 79 ~d~~iG~~~~~l~~l~~~~~~~~~~~~~~--------~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 79 KDKLIGTAEFDLSSLLQNPEQENLTKNLL--------RNGKPVGELNYDLRFFP 124 (124)
T ss_pred CCceeEEEEEEHHHhccCccccCcchhhh--------cCCccceEEEEEEEeCC
Confidence 9999999999999999775543 222221 14667899999999986
No 22
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.80 E-value=9.4e-19 Score=149.82 Aligned_cols=119 Identities=17% Similarity=0.283 Sum_probs=100.9
Q ss_pred EEEEEEEcCCCCcCC-CCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCCC
Q 009539 256 LHVKVVKAMNLKKKD-LLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHD 334 (532)
Q Consensus 256 L~V~v~~A~~L~~~d-~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~ 334 (532)
|.|+|++|+||+..+ ..|.+||||+++++++. .++|+++++|.||+|||+|.|.+.+. ...|.|.|||++..++|+
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~--~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~~~~~ 78 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEE--VFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVLRRDS 78 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCcc--EEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCCCCCCc
Confidence 689999999999874 45789999999997543 36899999999999999999999753 479999999999999999
Q ss_pred eeEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEE
Q 009539 335 KMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY 382 (532)
Q Consensus 335 ~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~ 382 (532)
+||++.++++++..+...+.|++|.+.. ...+..|+|+++++|
T Consensus 79 ~iG~~~i~l~~l~~~~~~~~w~~L~~~~-----~~~~~~G~i~l~~~~ 121 (121)
T cd08401 79 VIGKVAIKKEDLHKYYGKDTWFPLQPVD-----ADSEVQGKVHLELRL 121 (121)
T ss_pred eEEEEEEEHHHccCCCCcEeeEEEEccC-----CCCcccEEEEEEEEC
Confidence 9999999999999887788899885431 124468999999864
No 23
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.80 E-value=5.4e-19 Score=153.11 Aligned_cols=120 Identities=34% Similarity=0.527 Sum_probs=101.3
Q ss_pred EEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCC---CCEEEEEEEEccCCC-
Q 009539 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE---SQAVELAVYDWEQVG- 331 (532)
Q Consensus 256 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~---~~~L~v~v~d~d~~~- 331 (532)
|+|+|++|++|+..+..|.+||||+++++++. ++|++++++.||+|||+|.|.+.++. ...|.|+|||++..+
T Consensus 2 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~---~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~ 78 (127)
T cd04022 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQK---KRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGR 78 (127)
T ss_pred eEEEEEEeeCCCCCCCCCCcCcEEEEEECCEE---ecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcC
Confidence 89999999999999988999999999998754 48999999999999999999987543 368999999998876
Q ss_pred CCCeeEEEEEeCccCC-CCCCeEEEEecccccccCCCCCCccccEEEEEEEEE
Q 009539 332 KHDKMGMNVVPLKELT-PEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK 383 (532)
Q Consensus 332 ~d~~iG~~~i~l~~l~-~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~ 383 (532)
++++||++.++++++. .+.....|++|.+. ...++.+|+|++++.+.
T Consensus 79 ~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~-----~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 79 RRSFLGRVRISGTSFVPPSEAVVQRYPLEKR-----GLFSRVRGEIGLKVYIT 126 (127)
T ss_pred CCCeeeEEEEcHHHcCCCCCccceEeEeeeC-----CCCCCccEEEEEEEEEc
Confidence 8999999999999998 45666788887432 11245799999999764
No 24
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.80 E-value=6.5e-19 Score=152.96 Aligned_cols=123 Identities=29% Similarity=0.476 Sum_probs=103.5
Q ss_pred EEEEEEEEEcCCCCcCCC--CCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCC
Q 009539 254 GILHVKVVKAMNLKKKDL--LGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVG 331 (532)
Q Consensus 254 g~L~V~v~~A~~L~~~d~--~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~ 331 (532)
|+|+|+|++|++|+..+. .|.+||||++++++.. .+|++++++.||.|||+|.|.+.++..+.|.|+|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~---~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~ 77 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQR---FKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFA 77 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEE---EecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCC
Confidence 689999999999999988 8899999999997543 58999999999999999999998766789999999999888
Q ss_pred CCCeeEEEEEeCccCCC---CCCeEEEEecccccccCCCCCCccccEEEEEEEE
Q 009539 332 KHDKMGMNVVPLKELTP---EEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY 382 (532)
Q Consensus 332 ~d~~iG~~~i~l~~l~~---~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~ 382 (532)
++++||++.+++.++.. ......|+.|.... ..+.....|+|+++++|
T Consensus 78 ~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~---~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 78 GKDYLGEFDIALEEVFADGKTGQSDKWITLKSTR---PGKTSVVSGEIHLQFSW 128 (128)
T ss_pred CCCcceEEEEEHHHhhcccccCccceeEEccCcc---cCccccccceEEEEEEC
Confidence 99999999999999973 23456788774321 11345689999999875
No 25
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.80 E-value=9.6e-19 Score=153.18 Aligned_cols=110 Identities=27% Similarity=0.454 Sum_probs=95.4
Q ss_pred eEEEEEEEEEcCCCCcCC-CCCCCCcEEEEEEeCCc--CCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEE-Ecc
Q 009539 253 VGILHVKVVKAMNLKKKD-LLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVY-DWE 328 (532)
Q Consensus 253 ~g~L~V~v~~A~~L~~~d-~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~-d~d 328 (532)
.|.|.|+|++|+||+..+ ..|.+||||++++.+.. ..++||+++++|+||+|||+|.|.+. .....|.++|| |++
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~~ 106 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTGKTLQVIVWGDYG 106 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CCCCEEEEEEEeCCC
Confidence 589999999999999864 56889999999997654 34679999999999999999999997 56789999999 678
Q ss_pred CCCCCCeeEEEEEeCccCCCCCCeEEEEecccccc
Q 009539 329 QVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMD 363 (532)
Q Consensus 329 ~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~ 363 (532)
..+++++||++.|+|+++..+.....|++|.+...
T Consensus 107 ~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~~ 141 (146)
T cd04028 107 RMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTSS 141 (146)
T ss_pred CCCCCceEEEEEEEcccccCCCCceeEEecCCccc
Confidence 88899999999999999987777788998866433
No 26
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.80 E-value=1.7e-18 Score=149.48 Aligned_cols=122 Identities=22% Similarity=0.341 Sum_probs=102.0
Q ss_pred eEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCC
Q 009539 253 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGK 332 (532)
Q Consensus 253 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~ 332 (532)
...|+|+|++|+||+.. +.+||||++++++.. ..+|+++ ++.||.|||+|.|.+..+....+.|.|||++..++
T Consensus 3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~--~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~ 76 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNEVK--VARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSK 76 (126)
T ss_pred eeEEEEEEEEeeCCCCC---CCCCeeEEEEECCEe--EEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCC
Confidence 35799999999999875 468999999997643 2578874 68999999999998765544689999999999999
Q ss_pred CCeeEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEE
Q 009539 333 HDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP 384 (532)
Q Consensus 333 d~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p 384 (532)
|++||++.++|.++..+...+.|+++.+.. ....+..|+|+++++|.+
T Consensus 77 d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~----~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 77 DSEIAEVTVQLSKLQNGQETDEWYPLSSAS----PLKGGEWGSLRIRARYSH 124 (126)
T ss_pred CCeEEEEEEEHhHccCCCcccEeEEcccCC----CCCCCcCcEEEEEEEEEc
Confidence 999999999999999888888899886531 123567899999999986
No 27
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.80 E-value=4.5e-19 Score=152.05 Aligned_cols=105 Identities=30% Similarity=0.414 Sum_probs=92.0
Q ss_pred eEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCc--CCceeeEeeCCCCCceeecEEEEEe-e--CCCCCEEEEEEEEc
Q 009539 253 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTV-R--DPESQAVELAVYDW 327 (532)
Q Consensus 253 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v-~--~~~~~~L~v~v~d~ 327 (532)
.+.|.|+|++|++|+..+ .|.+||||++++.+.. ..+++|++++++.||+|||+|.|.+ . +.....|.++|||+
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~ 90 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH 90 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence 578999999999999999 8999999999998643 3457999999999999999999987 2 33467899999999
Q ss_pred cCCCCCCeeEEEEEeCccCCCCCCeEEEEec
Q 009539 328 EQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 358 (532)
Q Consensus 328 d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l 358 (532)
+..+++++||++.++|+++..++....|++|
T Consensus 91 d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 91 DSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 9999999999999999999987767777765
No 28
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.80 E-value=1.7e-18 Score=149.72 Aligned_cols=122 Identities=25% Similarity=0.460 Sum_probs=103.3
Q ss_pred EEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCCCe
Q 009539 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDK 335 (532)
Q Consensus 256 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~ 335 (532)
|.|+|++|+||+. ..|.+||||+++++.. ...++|++++++.||+|||+|.|.+.. ..+.|.|+|||++..++|++
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~-~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~~~~~~ 76 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEP-PQKYQSSTQKNTSNPFWDEHFLFELSP-NSKELLFEVYDNGKKSDSKF 76 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCC-CcEEEeEEEecCCCCccCceEEEEeCC-CCCEEEEEEEECCCCCCCce
Confidence 5799999999988 5689999999999742 234699999999999999999999854 46789999999999989999
Q ss_pred eEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEEc
Q 009539 336 MGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPF 385 (532)
Q Consensus 336 iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~ 385 (532)
||++.++++++..+.....|+++.... ..+....|+|++++.|.+.
T Consensus 77 lG~~~i~l~~l~~~~~~~~~~~L~~~~----~~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 77 LGLAIVPFDELRKNPSGRQIFPLQGRP----YEGDSVSGSITVEFLFMEP 122 (126)
T ss_pred EEEEEEeHHHhccCCceeEEEEecCCC----CCCCCcceEEEEEEEEecc
Confidence 999999999999887777888874321 1235689999999999864
No 29
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.80 E-value=9.6e-19 Score=151.31 Aligned_cols=111 Identities=25% Similarity=0.375 Sum_probs=95.2
Q ss_pred EEEEEeeeecCCCC---CCCCCEEEEEEcCeeEEEeeecCCCCCcccceEEEEecCC----CCCCeEEEEEEEccccccC
Q 009539 414 LVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEP----PTNDRLHVEVCSVSSRIGL 486 (532)
Q Consensus 414 L~v~i~~a~~L~~~---~~~dpyv~v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~~----~~~~~l~v~V~d~~~~~~~ 486 (532)
++|+|++|+||+.. +.+||||+++++++++||++++++.||+|||.|+|.+... .....|.++|||++.
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~---- 76 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNL---- 76 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccc----
Confidence 47999999999853 5799999999999999999999999999999999999762 234689999999985
Q ss_pred CCCCceeEEEEEechhhh--ccceeceEEEeCCC------CCeEEEEEEE
Q 009539 487 LHPKETLGYIDINLSDVV--SNKRINEKYHLIDS------KNGRIQIELQ 528 (532)
Q Consensus 487 ~~~d~~lG~~~i~L~~l~--~~~~~~~~~~L~~~------~~G~i~l~~~ 528 (532)
++.|++||++.++|+++. .+....+||+|.+. ..|+|+|+++
T Consensus 77 ~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 77 LGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred cCCCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 678999999999999998 45567899999743 2599999875
No 30
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.79 E-value=8.6e-19 Score=150.60 Aligned_cols=115 Identities=30% Similarity=0.503 Sum_probs=100.6
Q ss_pred EEEEEEEEEcCCCCcCCC------CCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEc
Q 009539 254 GILHVKVVKAMNLKKKDL------LGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDW 327 (532)
Q Consensus 254 g~L~V~v~~A~~L~~~d~------~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~ 327 (532)
|+|+|+|++|++|+..+. .|.+||||++++++. .++|++++++.||+|||+|.|.+.+...+.|.++|||+
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~---~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~ 77 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQ---TFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDE 77 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCE---eEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEec
Confidence 689999999999998875 368999999999863 36999999999999999999999876678999999999
Q ss_pred cCCCCCCeeEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEE
Q 009539 328 EQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY 382 (532)
Q Consensus 328 d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~ 382 (532)
+.. ++++||++.++++++..+.....|++|. ....|+|+++++|
T Consensus 78 ~~~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~----------~~~~G~~~~~~~~ 121 (121)
T cd08391 78 DPD-KDDFLGRLSIDLGSVEKKGFIDEWLPLE----------DVKSGRLHLKLEW 121 (121)
T ss_pred CCC-CCCcEEEEEEEHHHhcccCccceEEECc----------CCCCceEEEEEeC
Confidence 987 8999999999999998877778899872 3368999998865
No 31
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.79 E-value=1.5e-18 Score=149.51 Aligned_cols=115 Identities=19% Similarity=0.312 Sum_probs=98.8
Q ss_pred ccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC----CCCCCEEEEEEcC-----eeE
Q 009539 373 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK----HHTNPYARILFRG-----EER 443 (532)
Q Consensus 373 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~----~~~dpyv~v~~~~-----~~~ 443 (532)
.|+|++++.|.+. .+.|.|+|++|+||+.. +.+||||++++.. .++
T Consensus 1 ~G~i~~sl~y~~~-------------------------~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~ 55 (125)
T cd04029 1 SGEILFSLSYDYK-------------------------TQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKR 55 (125)
T ss_pred CcEEEEEEEEECC-------------------------CCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccce
Confidence 5999999999853 78899999999999752 5799999999952 346
Q ss_pred EEeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeC
Q 009539 444 KTKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLI 516 (532)
Q Consensus 444 kT~vv~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~ 516 (532)
||++++++.||+|||+|.|.+..... ...|.++|||++. ++++++||++.++|.++..++....||+|.
T Consensus 56 kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~~----~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 56 KTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYDR----FGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred EeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEECCC----CCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence 99999999999999999999875322 3479999999975 678999999999999998888889999983
No 32
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.79 E-value=3.3e-18 Score=153.23 Aligned_cols=123 Identities=28% Similarity=0.463 Sum_probs=103.6
Q ss_pred eEEEEEEEEEcCCCCcCC------------------------------CCCCCCcEEEEEEeCCcCCceeeEeeCCCCCc
Q 009539 253 VGILHVKVVKAMNLKKKD------------------------------LLGASDPYVKLKITEDKLPSKKTTVKHKNLNP 302 (532)
Q Consensus 253 ~g~L~V~v~~A~~L~~~d------------------------------~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP 302 (532)
.|+|.|+|.+|++|+++| ..|.+||||++++++.+. .+|++++++.||
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~--~rT~v~~~~~nP 83 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARV--ARTRVIENSENP 83 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEe--eEEEEeCCCCCC
Confidence 589999999999999987 246789999999986543 589999999999
Q ss_pred eeecEEEEEeeCCCCCEEEEEEEEccCCCCCCeeEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEE
Q 009539 303 EWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY 382 (532)
Q Consensus 303 ~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~ 382 (532)
+|||+|.|.+.+. .+.|.|+|||+|..+ +++||++.++++++..+...+.|+++... ..+..+..|+|+++++|
T Consensus 84 ~WnE~F~~~~~~~-~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~----~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 84 VWNESFHIYCAHY-ASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDS----NGKPPKPGAKIRVSLQF 157 (158)
T ss_pred ccceEEEEEccCC-CCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCC----CCCCCCCCCEEEEEEEE
Confidence 9999999998765 578999999999775 68999999999999988888899998542 11234567899999998
Q ss_pred E
Q 009539 383 K 383 (532)
Q Consensus 383 ~ 383 (532)
.
T Consensus 158 ~ 158 (158)
T cd04015 158 T 158 (158)
T ss_pred C
Confidence 3
No 33
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.79 E-value=1.5e-18 Score=148.37 Aligned_cols=112 Identities=27% Similarity=0.507 Sum_probs=97.4
Q ss_pred eEEEEEEeeeecCCCC---CCCCCEEEEEEcCeeEEEeeecC-CCCCcccceEEEEecCCCCCCeEEEEEEEccccccCC
Q 009539 412 GLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKK-NRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL 487 (532)
Q Consensus 412 g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~~~~kT~vv~~-t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~ 487 (532)
|.|+|+|++|+||+.. +.+||||++++++...+|+++++ +.||+|||.|.|.+... ..+.|.++|||++. .
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~-~~~~l~i~v~d~~~----~ 75 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITED-KKPILKVAVFDDDK----R 75 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCC-CCCEEEEEEEeCCC----C
Confidence 6899999999999863 58999999999998889998765 78999999999999874 45689999999875 3
Q ss_pred CCCceeEEEEEechhhhccceeceEEEeCCCC--CeEEEEEEEE
Q 009539 488 HPKETLGYIDINLSDVVSNKRINEKYHLIDSK--NGRIQIELQW 529 (532)
Q Consensus 488 ~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~--~G~i~l~~~w 529 (532)
+ |++||++.++++++..+....+||+|...+ .|+|+|+++|
T Consensus 76 ~-~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~G~i~l~l~f 118 (118)
T cd08681 76 K-PDLIGDTEVDLSPALKEGEFDDWYELTLKGRYAGEVYLELTF 118 (118)
T ss_pred C-CcceEEEEEecHHHhhcCCCCCcEEeccCCcEeeEEEEEEEC
Confidence 4 899999999999998876778999997653 6999999986
No 34
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.79 E-value=3.6e-18 Score=147.60 Aligned_cols=123 Identities=21% Similarity=0.346 Sum_probs=101.7
Q ss_pred CeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCC
Q 009539 252 PVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVG 331 (532)
Q Consensus 252 ~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~ 331 (532)
|.++|+|+|++|++|+..+..|.+||||++.++++. .+|++++++.||+|||.|.|.+.+. ...|.|+|||++..
T Consensus 1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~---~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~~- 75 (126)
T cd04046 1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGES---VRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSNLL- 75 (126)
T ss_pred CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEE---EEeCccCCCCCCcccceEEEEecCC-CCEEEEEEEECCCC-
Confidence 467999999999999999988999999999998764 4999999999999999999988764 67899999999876
Q ss_pred CCCeeEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEE
Q 009539 332 KHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP 384 (532)
Q Consensus 332 ~d~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p 384 (532)
+|++||++.+++.++......+ ++|.... ....++..|+|.+++.+.+
T Consensus 76 ~d~~lG~~~~~l~~~~~~~~~~--~~l~~~~---~~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 76 CDEFLGQATLSADPNDSQTLRT--LPLRKRG---RDAAGEVPGTISVKVTSSD 123 (126)
T ss_pred CCCceEEEEEecccCCCcCceE--EEcccCC---CCCCCCCCCEEEEEEEEcc
Confidence 4899999999999876554444 4442211 1245789999999998765
No 35
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.79 E-value=9.3e-19 Score=150.91 Aligned_cols=110 Identities=30% Similarity=0.437 Sum_probs=94.7
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCC-CCCCcEEEEEEeCCc--CCceeeEeeCCCCCceeecEEEEEeeC--CCCCEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLL-GASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRD--PESQAVELA 323 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~-g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~ 323 (532)
+....+.|.|+|++|+||+.++.. |.+||||++++.+.. ...++|++++++.||+|||+|.|.+.. .....|.++
T Consensus 10 y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~ 89 (125)
T cd08393 10 YDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLS 89 (125)
T ss_pred EECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEE
Confidence 444568999999999999999875 899999999997543 334699999999999999999999864 235789999
Q ss_pred EEEccCCCCCCeeEEEEEeCccCCCCCCeEEEEec
Q 009539 324 VYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 358 (532)
Q Consensus 324 v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l 358 (532)
|||++..+++++||++.++|.++........|++|
T Consensus 90 V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L 124 (125)
T cd08393 90 VWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPL 124 (125)
T ss_pred EEeCCCCCCCcEeEEEEEecCccccCCCCcceEEC
Confidence 99999999999999999999999877777778765
No 36
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.78 E-value=1.4e-18 Score=148.88 Aligned_cols=112 Identities=29% Similarity=0.399 Sum_probs=95.9
Q ss_pred ccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCC--CCCCCCEEEEEEcC-----eeEEE
Q 009539 373 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEG--KHHTNPYARILFRG-----EERKT 445 (532)
Q Consensus 373 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~--~~~~dpyv~v~~~~-----~~~kT 445 (532)
.|+|++++.|. .+.|.|.|++|+||+. .+.+||||++++.+ .++||
T Consensus 1 ~G~l~~~l~y~---------------------------~~~L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~~~kT 53 (122)
T cd08381 1 GGQVKLSISYK---------------------------NGTLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKT 53 (122)
T ss_pred CCeEEEEEEEe---------------------------CCEEEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCCceeC
Confidence 48999999996 3689999999999976 46899999999963 35699
Q ss_pred eeecCCCCCcccceEEEEe-cCC-CCCCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEe
Q 009539 446 KHVKKNRDPRWEEEFQFML-EEP-PTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHL 515 (532)
Q Consensus 446 ~vv~~t~nP~w~e~f~f~v-~~~-~~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L 515 (532)
++++++.||+|||+|+|.+ ... .....|.++|||++. ++++++||++.++|+++..++....||+|
T Consensus 54 ~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~----~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 54 KVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDS----LVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCCC----CcCCcEEEEEEEeccccccCCCccceEEC
Confidence 9999999999999999987 221 134589999999986 57899999999999999887777899997
No 37
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.78 E-value=1.3e-18 Score=149.76 Aligned_cols=110 Identities=27% Similarity=0.479 Sum_probs=95.6
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCC-CCCCCcEEEEEEeCCc--CCceeeEeeCCCCCceeecEEEEEeeCC--CCCEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDL-LGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELA 323 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~-~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~ 323 (532)
+....|.|.|+|++|+||+..+. .|.+||||++++.+.. ...+||++++++.||+|||+|.|.+... ....|.|+
T Consensus 10 y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~ 89 (125)
T cd04029 10 YDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLS 89 (125)
T ss_pred EECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence 45677899999999999998875 4789999999997543 3457999999999999999999998642 35689999
Q ss_pred EEEccCCCCCCeeEEEEEeCccCCCCCCeEEEEec
Q 009539 324 VYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 358 (532)
Q Consensus 324 v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l 358 (532)
|||++..+++++||++.+++.++........|++|
T Consensus 90 V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 90 VWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred EEECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence 99999999999999999999999988888888876
No 38
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.78 E-value=6.2e-18 Score=145.99 Aligned_cols=115 Identities=22% Similarity=0.369 Sum_probs=98.6
Q ss_pred ceEEEEEEeeeecCCCCCCCCCEEEEEEcCee-EEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCCCC
Q 009539 411 GGLLVVIVHEAQDVEGKHHTNPYARILFRGEE-RKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP 489 (532)
Q Consensus 411 ~g~L~v~i~~a~~L~~~~~~dpyv~v~~~~~~-~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~~ 489 (532)
...|+|+|++|+||+..+.+||||++++++.. .||++ +++.||.|||.|.|.+..+ ..+.+.|.|+|++. +++
T Consensus 3 ~~~L~V~Vi~A~~L~~~~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~-~~~~l~v~v~d~~~----~~~ 76 (126)
T cd08400 3 VRSLQLNVLEAHKLPVKHVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPP-DVNSFTISLSNKAK----RSK 76 (126)
T ss_pred eeEEEEEEEEeeCCCCCCCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCC-CcCEEEEEEEECCC----CCC
Confidence 45799999999999998889999999998855 58887 5689999999999987553 33579999999875 578
Q ss_pred CceeEEEEEechhhhccceeceEEEeCCC------CCeEEEEEEEEEe
Q 009539 490 KETLGYIDINLSDVVSNKRINEKYHLIDS------KNGRIQIELQWRT 531 (532)
Q Consensus 490 d~~lG~~~i~L~~l~~~~~~~~~~~L~~~------~~G~i~l~~~w~p 531 (532)
|++||++.++|+++..+...+.||+|... ..|+|+++++|.+
T Consensus 77 d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 77 DSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred CCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 99999999999999888778899999753 2499999999986
No 39
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.78 E-value=3.1e-18 Score=146.58 Aligned_cols=115 Identities=26% Similarity=0.430 Sum_probs=96.8
Q ss_pred EEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCCC
Q 009539 255 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHD 334 (532)
Q Consensus 255 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~ 334 (532)
.|.|+|++|+||+.. .+||||++++++.. .+|++++++.||+|||+|.|.+..+....|.++|||++.. +++
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~---~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~ 72 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLGNYK---GSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDD 72 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEECCcc---ccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCc
Confidence 389999999999887 68999999998643 5999999999999999999998776678999999999976 799
Q ss_pred eeEEEEEeCccCCCCC-----CeEEEEecccccccCCCCCCccccEEEEEEEEE
Q 009539 335 KMGMNVVPLKELTPEE-----PSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK 383 (532)
Q Consensus 335 ~iG~~~i~l~~l~~~~-----~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~ 383 (532)
+||++.++++++.... ....|++|... .+.+.+|+|++++.|-
T Consensus 73 ~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~------~~~~~~G~i~l~~~~~ 120 (121)
T cd08378 73 FLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDK------KGGRVGGELMLAVWFG 120 (121)
T ss_pred eeeeEEEEhHhCcCCCCCCCCCCcceEEccCC------CCCccceEEEEEEEec
Confidence 9999999999987532 24578887442 1257899999999873
No 40
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.78 E-value=1.7e-18 Score=149.28 Aligned_cols=115 Identities=23% Similarity=0.334 Sum_probs=98.0
Q ss_pred ccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC----CCCCCEEEEEEcC-----eeE
Q 009539 373 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK----HHTNPYARILFRG-----EER 443 (532)
Q Consensus 373 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~----~~~dpyv~v~~~~-----~~~ 443 (532)
+|+|++++.|.+. .+.|.|+|++|+||+.. +.+||||++++.. .++
T Consensus 1 ~G~i~~sl~y~~~-------------------------~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~ 55 (125)
T cd08393 1 QGSVQFALDYDPK-------------------------LRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKR 55 (125)
T ss_pred CcEEEEEEEEECC-------------------------CCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccc
Confidence 5999999999863 67899999999999763 5799999999952 346
Q ss_pred EEeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeC
Q 009539 444 KTKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLI 516 (532)
Q Consensus 444 kT~vv~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~ 516 (532)
||++++++.||+|||.|.|.+..... ...|.++|||++. ++++++||++.++|.++..++....||+|.
T Consensus 56 kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~~----~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 56 KTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRDS----LGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred cCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeCCC----CCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 99999999999999999999864322 3489999999985 678999999999999997777778999984
No 41
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.78 E-value=3.9e-18 Score=149.37 Aligned_cols=116 Identities=26% Similarity=0.368 Sum_probs=98.5
Q ss_pred CccccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC----CCCCCEEEEEEcCe----
Q 009539 370 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK----HHTNPYARILFRGE---- 441 (532)
Q Consensus 370 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~----~~~dpyv~v~~~~~---- 441 (532)
....|+|.+++.|. .|.|.|+|++|+||+.. +.+||||++++...
T Consensus 14 ~~~~G~l~lsl~y~---------------------------~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~ 66 (146)
T cd04028 14 SPSMGDIQLGLYDK---------------------------KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCI 66 (146)
T ss_pred CCCcceEEEEEEeC---------------------------CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccc
Confidence 56789999999983 47899999999999752 57899999999532
Q ss_pred -eEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEE-ccccccCCCCCceeEEEEEechhhhccceeceEEEeCCC
Q 009539 442 -ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCS-VSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDS 518 (532)
Q Consensus 442 -~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d-~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~ 518 (532)
++||++++++.||+|||+|+|.+. . ....|.++||+ ++. ++++++||++.++|+++..+.....||+|...
T Consensus 67 ~k~KT~v~kktlnPvfNE~F~f~v~-l-~~~~L~v~V~~d~~~----~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 67 AKKKTKIARKTLDPLYQQQLVFDVS-P-TGKTLQVIVWGDYGR----MDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred cceeceecCCCCCCccCCeEEEEEc-C-CCCEEEEEEEeCCCC----CCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 569999999999999999999998 2 56689999995 443 57899999999999998767777899999764
No 42
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.78 E-value=1.7e-18 Score=149.32 Aligned_cols=110 Identities=31% Similarity=0.621 Sum_probs=96.9
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCC--CCCEEEEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYD 326 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d 326 (532)
+....|.|.|+|++|++|+..+..|.+||||++++.+.....++|++++++.||+|||+|.|.+... ....|.++|||
T Consensus 11 y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d 90 (124)
T cd08387 11 YDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYD 90 (124)
T ss_pred ECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEE
Confidence 4556789999999999999999889999999999965444457999999999999999999998643 25689999999
Q ss_pred ccCCCCCCeeEEEEEeCccCCCCCCeEEEEec
Q 009539 327 WEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 358 (532)
Q Consensus 327 ~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l 358 (532)
++..+++++||++.++++++..+.....|++|
T Consensus 91 ~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08387 91 FDQFSRDECIGVVELPLAEVDLSEKLDLWRKI 122 (124)
T ss_pred CCCCCCCceeEEEEEecccccCCCCcceEEEC
Confidence 99999999999999999999987788888876
No 43
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.78 E-value=4.6e-18 Score=144.92 Aligned_cols=112 Identities=21% Similarity=0.399 Sum_probs=99.9
Q ss_pred EEEEEEeeeecCCCC---CCCCCEEEEEEcCeeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCCCC
Q 009539 413 LLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP 489 (532)
Q Consensus 413 ~L~v~i~~a~~L~~~---~~~dpyv~v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~~ 489 (532)
+++|+|++|+||+.. +.+||||+++++++..+|++++++.||.|||.|.|.+... ..+.+.++|||++. ++.
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~~l~v~v~d~~~----~~~ 75 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDD-QSQILEIEVWDKDT----GKK 75 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCC-CCCEEEEEEEECCC----CCC
Confidence 478999999999874 5799999999999999999999999999999999999864 45789999999985 568
Q ss_pred CceeEEEEEechhhhccceeceEEEeCCCCCeEEEEEEEEE
Q 009539 490 KETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIELQWR 530 (532)
Q Consensus 490 d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~l~~~w~ 530 (532)
+++||++.++|+++..+.....||+|.+. .|+|++.+.|.
T Consensus 76 ~~~iG~~~~~l~~l~~~~~~~~w~~L~~~-~G~~~~~~~~~ 115 (116)
T cd08376 76 DEFIGRCEIDLSALPREQTHSLELELEDG-EGSLLLLLTLT 115 (116)
T ss_pred CCeEEEEEEeHHHCCCCCceEEEEEccCC-CcEEEEEEEec
Confidence 99999999999999888888899999764 79999998874
No 44
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.78 E-value=4.2e-18 Score=147.82 Aligned_cols=113 Identities=26% Similarity=0.458 Sum_probs=98.9
Q ss_pred eEEEEEEeeeecCCC-----CCCCCCEEEEEEcCeeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccC
Q 009539 412 GLLVVIVHEAQDVEG-----KHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGL 486 (532)
Q Consensus 412 g~L~v~i~~a~~L~~-----~~~~dpyv~v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~ 486 (532)
|.|+|+|++|+||+. .+.+||||++++++++.+|++++++.||.|||.|+|.+... ..+.|.|+|||++.
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~-~~~~l~i~v~d~~~---- 75 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSA-QNQLLKLILWDKDR---- 75 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCC-CCCEEEEEEEECCC----
Confidence 689999999999975 35789999999999999999999999999999999999873 45789999999985
Q ss_pred CCCCceeEEEEEechhhhc---cceeceEEEeCCC-------CCeEEEEEEEE
Q 009539 487 LHPKETLGYIDINLSDVVS---NKRINEKYHLIDS-------KNGRIQIELQW 529 (532)
Q Consensus 487 ~~~d~~lG~~~i~L~~l~~---~~~~~~~~~L~~~-------~~G~i~l~~~w 529 (532)
++.+++||++.++|.++.. .....+||+|.+. .+|+|+|++.|
T Consensus 76 ~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 76 FAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred CCCCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 5678999999999999983 3446799999765 37999999998
No 45
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.77 E-value=6.6e-18 Score=145.03 Aligned_cols=113 Identities=23% Similarity=0.405 Sum_probs=99.7
Q ss_pred EEEEEEeeeecCCCC---CCCCCEEEEEEcC-eeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCCC
Q 009539 413 LLVVIVHEAQDVEGK---HHTNPYARILFRG-EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLH 488 (532)
Q Consensus 413 ~L~v~i~~a~~L~~~---~~~dpyv~v~~~~-~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~ 488 (532)
.|+|+|++|++|+.. +.+||||++++++ ...+|++++++.||+|||.|.|.+.+. .+.+.++|||++. ++
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~--~~~l~~~v~D~d~----~~ 74 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDV--TQPLYIKVFDYDR----GL 74 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCC--CCeEEEEEEeCCC----CC
Confidence 378999999999863 6899999999988 456999999999999999999998764 4689999999986 56
Q ss_pred CCceeEEEEEechhhhccceeceEEEeCCCC----CeEEEEEEEEEe
Q 009539 489 PKETLGYIDINLSDVVSNKRINEKYHLIDSK----NGRIQIELQWRT 531 (532)
Q Consensus 489 ~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~----~G~i~l~~~w~p 531 (532)
+|++||++.++|+++..+.....|++|.+.+ .|+|.+.+++.|
T Consensus 75 ~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 75 TDDFMGSAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTLTP 121 (121)
T ss_pred CCcceEEEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEECC
Confidence 8999999999999999888888999997554 499999999987
No 46
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.77 E-value=5.8e-18 Score=147.97 Aligned_cols=123 Identities=36% Similarity=0.620 Sum_probs=101.6
Q ss_pred EEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCc----CCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCC
Q 009539 255 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK----LPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQV 330 (532)
Q Consensus 255 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~----~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~ 330 (532)
.|+|+|++|++|+..+..|.+||||++++.+.. ....+|++++++.||.|||+|.|.+... ...|.++|||++..
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~~ 79 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR-EHRLLFEVFDENRL 79 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC-CCEEEEEEEECCCC
Confidence 489999999999999988999999999998652 2245899999999999999999998653 57899999999999
Q ss_pred CCCCeeEEEEEeCccCCCCCC------eEEEEecccccccCCCCCCccccEEEEEEEEE
Q 009539 331 GKHDKMGMNVVPLKELTPEEP------SVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK 383 (532)
Q Consensus 331 ~~d~~iG~~~i~l~~l~~~~~------~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~ 383 (532)
+++++||++.+++.++..... ...|++|.+. ...++..|+|++++.|.
T Consensus 80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPR-----SSKSRVKGHLRLYMAYL 133 (133)
T ss_pred CCCCeeEEEEEEHHHCCCcCccccccccchheeeeec-----CCCCcceeEEEEEEeeC
Confidence 999999999999999986532 3466666431 11356899999999883
No 47
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.77 E-value=4.6e-18 Score=145.45 Aligned_cols=111 Identities=23% Similarity=0.419 Sum_probs=92.9
Q ss_pred EEEEEEeeeec---CCC---CCCCCCEEEEEEcCeeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccc--
Q 009539 413 LLVVIVHEAQD---VEG---KHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRI-- 484 (532)
Q Consensus 413 ~L~v~i~~a~~---L~~---~~~~dpyv~v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~-- 484 (532)
+|.|+|++|++ |+. .|.+||||++++++++.||++++++.||+|||+|.|.+.+. ...|.++|||++...
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~--~~~l~v~V~d~d~~~~~ 78 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDP--CTVLTVGVFDNSQSHWK 78 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCC--CCEEEEEEEECCCcccc
Confidence 48899999999 654 37899999999999999999999999999999999999864 358999999987510
Q ss_pred cCCCCCceeEEEEEechhhhccceeceEEEeCCC------CCeEEEE
Q 009539 485 GLLHPKETLGYIDINLSDVVSNKRINEKYHLIDS------KNGRIQI 525 (532)
Q Consensus 485 ~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~------~~G~i~l 525 (532)
+-+.+|++||++.++|+++..+....+||+|.+. +.|+|++
T Consensus 79 ~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 79 EAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred ccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 0013799999999999999988888999999743 3577764
No 48
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.77 E-value=3.3e-18 Score=147.59 Aligned_cols=110 Identities=34% Similarity=0.516 Sum_probs=96.8
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCC--CCCEEEEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYD 326 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d 326 (532)
+....+.|.|+|++|+||+..+..|.+||||++++.+.....++|++++++.||+|||+|.|.+... ....|.|+|||
T Consensus 11 y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d 90 (124)
T cd08385 11 YDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYD 90 (124)
T ss_pred EeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEe
Confidence 4556789999999999999999889999999999986554567999999999999999999998642 35689999999
Q ss_pred ccCCCCCCeeEEEEEeCccCCCCCCeEEEEec
Q 009539 327 WEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 358 (532)
Q Consensus 327 ~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l 358 (532)
++..+++++||++.++++++..+.....|+++
T Consensus 91 ~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08385 91 FDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDL 122 (124)
T ss_pred CCCCCCCceeEEEEEecCcccCCCCcceEEEc
Confidence 99999999999999999999887777888876
No 49
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.77 E-value=1.1e-17 Score=145.98 Aligned_cols=116 Identities=25% Similarity=0.524 Sum_probs=101.5
Q ss_pred CCceEEEEEEeeeecCCCC---CCCCCEEEEEEcCeeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccccc
Q 009539 409 AGGGLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIG 485 (532)
Q Consensus 409 ~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~ 485 (532)
...|.|+|+|++|++|+.. +.+||||+++++++..+|++++++.||.|||.|+|.+.+. ..+.+.++|||++.
T Consensus 12 ~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~-~~~~l~i~V~D~d~--- 87 (136)
T cd08375 12 SGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDL-EQDVLCITVFDRDF--- 87 (136)
T ss_pred CCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCc-cCCEEEEEEEECCC---
Confidence 3579999999999999763 6899999999999999999999999999999999999764 45689999999985
Q ss_pred CCCCCceeEEEEEechhhhc-----cceeceEEEeCCCCCeEEEEEEEE
Q 009539 486 LLHPKETLGYIDINLSDVVS-----NKRINEKYHLIDSKNGRIQIELQW 529 (532)
Q Consensus 486 ~~~~d~~lG~~~i~L~~l~~-----~~~~~~~~~L~~~~~G~i~l~~~w 529 (532)
++.|++||++.++|.++.. +....+|.+|.+...|+|++++.+
T Consensus 88 -~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~ 135 (136)
T cd08375 88 -FSPDDFLGRTEIRVADILKETKESKGPITKRLLLHEVPTGEVVVKLDL 135 (136)
T ss_pred -CCCCCeeEEEEEEHHHhccccccCCCcEEEEeccccccceeEEEEEEe
Confidence 5789999999999999987 334567888877778999999986
No 50
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.77 E-value=5.4e-18 Score=145.14 Aligned_cols=111 Identities=22% Similarity=0.382 Sum_probs=96.7
Q ss_pred EEEEEEeeeecCCCCCCCCCEEEEEEcCeeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCCCCCce
Q 009539 413 LLVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKET 492 (532)
Q Consensus 413 ~L~v~i~~a~~L~~~~~~dpyv~v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~~d~~ 492 (532)
.|.|+|++|+||+.. .+||||+++++++..||++++++.||+|||+|+|.+... ....|.++|||++. + .+++
T Consensus 1 ~L~V~Vi~a~~L~~~-~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~-~~~~L~~~v~d~d~----~-~~~~ 73 (121)
T cd08378 1 YLYVRVVKARGLPAN-SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRL-QGSTLEVSVWDKDK----A-KDDF 73 (121)
T ss_pred CEEEEEEEecCCCcc-cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCC-cCCEEEEEEEeCCC----C-cCce
Confidence 378999999999987 899999999999889999999999999999999998764 45689999999975 3 6899
Q ss_pred eEEEEEechhhhccc-----eeceEEEeCCCC----CeEEEEEEEEE
Q 009539 493 LGYIDINLSDVVSNK-----RINEKYHLIDSK----NGRIQIELQWR 530 (532)
Q Consensus 493 lG~~~i~L~~l~~~~-----~~~~~~~L~~~~----~G~i~l~~~w~ 530 (532)
||++.++|+++..+. ...+||+|.+.. .|+|++++.|-
T Consensus 74 lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~~ 120 (121)
T cd08378 74 LGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWFG 120 (121)
T ss_pred eeeEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEec
Confidence 999999999987643 246899998754 59999999873
No 51
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.77 E-value=7.8e-18 Score=144.18 Aligned_cols=118 Identities=31% Similarity=0.546 Sum_probs=100.0
Q ss_pred EEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCC
Q 009539 254 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKH 333 (532)
Q Consensus 254 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d 333 (532)
|.|.|+|++|++|+..+..+.+||||++++++.. .+|++++++.||.|||+|.|.+.+. .+.+.|+|||++..+++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~---~~T~~~~~t~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~~~~ 76 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNAR---LQTHTIYKTLNPEWNKIFTFPIKDI-HDVLEVTVYDEDKDKKP 76 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEe---eecceecCCcCCccCcEEEEEecCc-CCEEEEEEEECCCCCCC
Confidence 6899999999999999988999999999997654 4899999999999999999998654 57899999999988899
Q ss_pred CeeEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEE
Q 009539 334 DKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY 382 (532)
Q Consensus 334 ~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~ 382 (532)
++||++.+++.++..+.. .|+.+... ....+..|+|.+++.+
T Consensus 77 ~~iG~~~~~l~~~~~~~~--~~~~l~~~-----~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 77 EFLGKVAIPLLSIKNGER--KWYALKDK-----KLRTRAKGSILLEMDV 118 (119)
T ss_pred ceeeEEEEEHHHCCCCCc--eEEECccc-----CCCCceeeEEEEEEEe
Confidence 999999999999986644 46665332 1134579999999876
No 52
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.76 E-value=8.6e-18 Score=148.97 Aligned_cols=114 Identities=25% Similarity=0.352 Sum_probs=97.0
Q ss_pred EEEEEEeeeecCCCC---CCCCCEEEEEEcCeeEEEeeecC-CCCCcccceEEEEecCCCCCCeEEEEEEEccccccCCC
Q 009539 413 LLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKK-NRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLH 488 (532)
Q Consensus 413 ~L~v~i~~a~~L~~~---~~~dpyv~v~~~~~~~kT~vv~~-t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~ 488 (532)
.|.|+|++|+||+.. +.+||||+++++++..+|+++.+ +.||+|||.|+|.+.++ ..+.+.++|+|++. ++
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~-~~~~l~v~V~d~~~----~~ 75 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEP-FEDHLILSVEDRVG----PN 75 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCc-cCCeEEEEEEEecC----CC
Confidence 478999999999763 68999999999999999999976 69999999999999764 45689999999875 46
Q ss_pred CCceeEEEEEechhhhcc----ceeceEEEeCCCC-----------CeEEEEEEEEEe
Q 009539 489 PKETLGYIDINLSDVVSN----KRINEKYHLIDSK-----------NGRIQIELQWRT 531 (532)
Q Consensus 489 ~d~~lG~~~i~L~~l~~~----~~~~~~~~L~~~~-----------~G~i~l~~~w~p 531 (532)
+|++||++.++|+++..+ ....+||+|.+.+ +|+|+|++.+.+
T Consensus 76 ~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~ 133 (150)
T cd04019 76 KDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDG 133 (150)
T ss_pred CCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecC
Confidence 789999999999998753 3468999998653 399999998754
No 53
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.76 E-value=2.7e-18 Score=144.88 Aligned_cols=95 Identities=31% Similarity=0.508 Sum_probs=84.7
Q ss_pred EEEEEEEEEcCCCCcCCCC-CCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCC---CCCEEEEEEEEccC
Q 009539 254 GILHVKVVKAMNLKKKDLL-GASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP---ESQAVELAVYDWEQ 329 (532)
Q Consensus 254 g~L~V~v~~A~~L~~~d~~-g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~---~~~~L~v~v~d~d~ 329 (532)
|+|+|+|++|++|+..+.. |.+||||++++.+......+|++++++.||+|||+|.|.+... ..+.|.++|||+|.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 7899999999999999987 8999999999975443457999999999999999999987653 35689999999999
Q ss_pred CCCCCeeEEEEEeCccCCC
Q 009539 330 VGKHDKMGMNVVPLKELTP 348 (532)
Q Consensus 330 ~~~d~~iG~~~i~l~~l~~ 348 (532)
.++|++||++.+++.++..
T Consensus 81 ~~~dd~lG~~~i~l~~l~~ 99 (111)
T cd04041 81 FTADDRLGRVEIDLKELIE 99 (111)
T ss_pred CCCCCcceEEEEEHHHHhc
Confidence 9999999999999999983
No 54
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.76 E-value=5.2e-18 Score=146.75 Aligned_cols=110 Identities=26% Similarity=0.421 Sum_probs=92.3
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCC-CCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEE-eeC--CCCCEEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLL-GASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFT-VRD--PESQAVELAV 324 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~-g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~-v~~--~~~~~L~v~v 324 (532)
+....+.|.|+|++|+||+..+.. |.+||||++++.+...+..||++++++.||+|||+|.|. +.. .....|.++|
T Consensus 11 y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V 90 (128)
T cd08388 11 YNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAV 90 (128)
T ss_pred EECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEE
Confidence 455678999999999999998876 889999999998655555799999999999999999993 432 2245799999
Q ss_pred EEccCCCCCCeeEEEEEeCccCCCC--CCeEEEEec
Q 009539 325 YDWEQVGKHDKMGMNVVPLKELTPE--EPSVKTLDL 358 (532)
Q Consensus 325 ~d~d~~~~d~~iG~~~i~l~~l~~~--~~~~~~l~l 358 (532)
||+|..++|++||++.++|+++... .....|+++
T Consensus 91 ~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~ 126 (128)
T cd08388 91 LSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREI 126 (128)
T ss_pred EEcCCCCCCceeEEEEEeccccCCCCCceEEEEEec
Confidence 9999999999999999999999765 455677765
No 55
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.76 E-value=6e-18 Score=145.99 Aligned_cols=115 Identities=20% Similarity=0.288 Sum_probs=96.7
Q ss_pred ccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC----CCCCCEEEEEEcC-----eeE
Q 009539 373 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK----HHTNPYARILFRG-----EER 443 (532)
Q Consensus 373 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~----~~~dpyv~v~~~~-----~~~ 443 (532)
.|+|.+++.|.+. .+.|.|+|++|+||+.. +.+||||++++.. .++
T Consensus 1 ~G~i~~sl~Y~~~-------------------------~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~ 55 (128)
T cd08392 1 TGEIEFALHYNFR-------------------------TSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKR 55 (128)
T ss_pred CcEEEEEEEEeCC-------------------------CCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCccccee
Confidence 4899999999863 67999999999999752 6789999999953 256
Q ss_pred EEeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEccccccCCCCCceeEEEEEechhhhcc---ceeceEEEeC
Q 009539 444 KTKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSN---KRINEKYHLI 516 (532)
Q Consensus 444 kT~vv~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~---~~~~~~~~L~ 516 (532)
||++++++.||+|||+|.|.+..... ...|.+.|||.+. ++++++||++.|+|+++... +...+||+|.
T Consensus 56 kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~~----~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 56 KTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHSRT----LKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred ecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeCCC----CcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 99999999999999999999865323 3489999999975 57899999999999998543 3678999984
No 56
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.76 E-value=7.7e-18 Score=148.44 Aligned_cols=123 Identities=24% Similarity=0.377 Sum_probs=96.7
Q ss_pred EEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCc--CCceeeEeeCCCCCceeecEEEEEee---------------CCCCC
Q 009539 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVR---------------DPESQ 318 (532)
Q Consensus 256 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~---------------~~~~~ 318 (532)
|.|+|++|+||+. ..|.+||||++++.+.. ...++|+++++|.||+|||+|.|.+. +....
T Consensus 2 L~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T cd04010 2 LSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKL 79 (148)
T ss_pred EEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEE
Confidence 7899999999998 45899999999998632 23468999999999999999999985 11235
Q ss_pred EEEEEEEEccCCCCCCeeEEEEEeCccCCCC-CCeEEEEecccccccCC-----CCCCccccEEEEEE
Q 009539 319 AVELAVYDWEQVGKHDKMGMNVVPLKELTPE-EPSVKTLDLLKNMDLND-----GQNEKSRGQLVVEF 380 (532)
Q Consensus 319 ~L~v~v~d~d~~~~d~~iG~~~i~l~~l~~~-~~~~~~l~l~~~~~~~~-----~~~~~~~G~l~l~l 380 (532)
.|.|.|||++..++|++||++.+++.++..+ .....|++|.+.....+ ..+....|.|++.+
T Consensus 80 ~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T cd04010 80 ELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEKSTPPGTRSSKDNSLGSLRLKI 147 (148)
T ss_pred EEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCcccccCCCCCcccccCCcccEEEec
Confidence 7999999999888999999999999999987 56678888855433221 12234567777654
No 57
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.76 E-value=5.7e-18 Score=144.38 Aligned_cols=102 Identities=26% Similarity=0.373 Sum_probs=86.2
Q ss_pred ceEEEEEEeeeecCCCC--CCCCCEEEEEEcC-----eeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccc
Q 009539 411 GGLLVVIVHEAQDVEGK--HHTNPYARILFRG-----EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSR 483 (532)
Q Consensus 411 ~g~L~v~i~~a~~L~~~--~~~dpyv~v~~~~-----~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~ 483 (532)
.+.|.|+|++|+||+.. +.+||||++++.. .++||++++++.||+|||+|.|.+........+.++|||++..
T Consensus 11 ~~~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~ 90 (119)
T cd08685 11 NRKLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLSK 90 (119)
T ss_pred CCEEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCCC
Confidence 57899999999999764 6789999999964 2559999999999999999999987543445799999998752
Q ss_pred ccCCCCCceeEEEEEechhhhccceeceEEEe
Q 009539 484 IGLLHPKETLGYIDINLSDVVSNKRINEKYHL 515 (532)
Q Consensus 484 ~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L 515 (532)
..++++||++.++|.++..++...+||.|
T Consensus 91 ---~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 91 ---SRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred ---cCCCEEEEEEEecHHHhccCccccceEeC
Confidence 23578999999999999877778999986
No 58
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.76 E-value=1.5e-17 Score=145.15 Aligned_cols=116 Identities=28% Similarity=0.482 Sum_probs=100.9
Q ss_pred eEEEEEEEEEcCCCCcCCCC----------CCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEE
Q 009539 253 VGILHVKVVKAMNLKKKDLL----------GASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVEL 322 (532)
Q Consensus 253 ~g~L~V~v~~A~~L~~~d~~----------g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v 322 (532)
.|.|+|+|++|++|+..+.. |.+||||++.++++.. .+|+++.++.||.|||+|.|.+.+ ...|.|
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~--~kT~~~~~t~~P~Wne~f~~~v~~--~~~l~~ 78 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHI--GKTSTKPKTNSPVWNEEFTTEVHN--GRNLEL 78 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEE--eEEeEcCCCCCCCcceeEEEEcCC--CCEEEE
Confidence 58999999999999988862 5789999999986543 589999999999999999999963 578999
Q ss_pred EEEEccCCCCCCeeEEEEEeCccCCC--CCCeEEEEecccccccCCCCCCccccEEEEEEEEEE
Q 009539 323 AVYDWEQVGKHDKMGMNVVPLKELTP--EEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP 384 (532)
Q Consensus 323 ~v~d~d~~~~d~~iG~~~i~l~~l~~--~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p 384 (532)
.|||++..+++++||++.++|.++.. +...+.|++|. ..|+|+++++|..
T Consensus 79 ~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~------------~~G~l~l~~~~~~ 130 (132)
T cd04014 79 TVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE------------PQGKLHVKIELKG 130 (132)
T ss_pred EEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc------------CCcEEEEEEEEec
Confidence 99999988899999999999999987 56678888872 4699999999874
No 59
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.76 E-value=4.2e-18 Score=145.63 Aligned_cols=110 Identities=16% Similarity=0.197 Sum_probs=93.1
Q ss_pred cCCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCc---CCceeeEeeCCCCCceeecEEEEEeeCC--CCCEEEE
Q 009539 248 AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK---LPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVEL 322 (532)
Q Consensus 248 ~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~---~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v 322 (532)
.|+...+.|.|+|++|+||+..+..|.+||||++++.+.. ...++|++++++.||+|||+|.|.+... ....|.+
T Consensus 8 ~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~ 87 (124)
T cd08680 8 RYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQV 87 (124)
T ss_pred EECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEE
Confidence 3556778999999999999999888899999999998755 2467999999999999999999998643 3679999
Q ss_pred EEEEccCCCCCCeeEEEEEeCccCCCCC-CeEEEEe
Q 009539 323 AVYDWEQVGKHDKMGMNVVPLKELTPEE-PSVKTLD 357 (532)
Q Consensus 323 ~v~d~d~~~~d~~iG~~~i~l~~l~~~~-~~~~~l~ 357 (532)
+|||++..+++++||++.++|.++.... ....|+.
T Consensus 88 ~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~ 123 (124)
T cd08680 88 DVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYN 123 (124)
T ss_pred EEEeCCCCCceeEEEEEEEEhhhccCCCcccccccc
Confidence 9999999999999999999999996543 3444543
No 60
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.76 E-value=2.1e-17 Score=143.05 Aligned_cols=118 Identities=33% Similarity=0.461 Sum_probs=100.4
Q ss_pred EEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCCC
Q 009539 255 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHD 334 (532)
Q Consensus 255 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~ 334 (532)
.|+|+|++|++|+..+..|.+||||++.+.+.....++|++++++.||.|||+|.|.+.....+.|.|+|||++..++++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 58999999999999998899999999998754334569999999999999999999997755689999999999888999
Q ss_pred eeEEEEEeCccCCC---CCCeEEEEecccccccCCCCCCccccEEEEEEEEEE
Q 009539 335 KMGMNVVPLKELTP---EEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP 384 (532)
Q Consensus 335 ~iG~~~i~l~~l~~---~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p 384 (532)
+||++.+++.++.. +.....|+++. ..|++++.+.+.-
T Consensus 82 ~iG~~~i~l~~~~~~~~~~~~~~w~~l~------------~~g~i~l~~~~~~ 122 (126)
T cd04043 82 LCGRASLKLDPKRFGDDGLPREIWLDLD------------TQGRLLLRVSMEG 122 (126)
T ss_pred eEEEEEEecCHHHcCCCCCCceEEEEcC------------CCCeEEEEEEEee
Confidence 99999999987643 34567888872 3689999988864
No 61
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.75 E-value=1.7e-17 Score=142.34 Aligned_cols=118 Identities=25% Similarity=0.441 Sum_probs=99.2
Q ss_pred EEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCCCe
Q 009539 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDK 335 (532)
Q Consensus 256 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~ 335 (532)
|.|+|++|++|+..+..|.+||||++.+++.. ..+|++++++.||+|||.|.|.+... .+.|.|+|||++..++|++
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~--~~kT~v~~~t~nP~Wne~f~~~~~~~-~~~l~v~v~d~~~~~~d~~ 78 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEV--IIRTATVWKTLNPFWGEEYTVHLPPG-FHTVSFYVLDEDTLSRDDV 78 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEe--eeeeeeEcCCCCCcccceEEEeeCCC-CCEEEEEEEECCCCCCCCE
Confidence 78999999999999999999999999997643 35999999999999999999998653 4799999999999999999
Q ss_pred eEEEEEeCccCCCC-CCeEEEEecccccccCCCCCCccccEEEEEEE
Q 009539 336 MGMNVVPLKELTPE-EPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFI 381 (532)
Q Consensus 336 iG~~~i~l~~l~~~-~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~ 381 (532)
||++.++++++... ...+.|++|.+. ..+....|+|++.++
T Consensus 79 iG~~~~~~~~~~~~~~~~~~W~~L~~~-----~~~~~~~G~i~l~~~ 120 (121)
T cd04054 79 IGKVSLTREVISAHPRGIDGWMNLTEV-----DPDEEVQGEIHLELS 120 (121)
T ss_pred EEEEEEcHHHhccCCCCCCcEEECeee-----CCCCccccEEEEEEE
Confidence 99999999988754 236678887432 123557899998874
No 62
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.75 E-value=1.1e-17 Score=144.19 Aligned_cols=116 Identities=20% Similarity=0.400 Sum_probs=99.5
Q ss_pred cccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEEc---CeeEEE
Q 009539 372 SRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFR---GEERKT 445 (532)
Q Consensus 372 ~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~---~~~~kT 445 (532)
.+|+|++++.|.|. .|.|.|+|++|+||+.. +.+||||++++. .+.++|
T Consensus 1 ~~G~l~~sl~y~~~-------------------------~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT 55 (124)
T cd08387 1 TRGELHFSLEYDKD-------------------------MGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQS 55 (124)
T ss_pred CCCEEEEEEEECCC-------------------------CCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeC
Confidence 37999999999863 68999999999999863 679999999994 335799
Q ss_pred eeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeC
Q 009539 446 KHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLI 516 (532)
Q Consensus 446 ~vv~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~ 516 (532)
++++++.||+|||.|.|.+..... ...|.++|||++. ++++++||++.++|+++..++..+.||+|.
T Consensus 56 ~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~----~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 56 KIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQ----FSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred ceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCC----CCCCceeEEEEEecccccCCCCcceEEECc
Confidence 999999999999999999875322 3479999999975 678999999999999998777889999985
No 63
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.75 E-value=1.5e-17 Score=142.26 Aligned_cols=110 Identities=19% Similarity=0.401 Sum_probs=96.8
Q ss_pred EEEEEeeeecCCCC---CCCCCEEEEEEcC---eeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCC
Q 009539 414 LVVIVHEAQDVEGK---HHTNPYARILFRG---EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL 487 (532)
Q Consensus 414 L~v~i~~a~~L~~~---~~~dpyv~v~~~~---~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~ 487 (532)
|+|+|++|++|+.. +.+||||++++++ ..++|++++++.||+|||+|+|.+... ..+.|.|+|||++. +
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~-~~~~l~v~v~d~d~----~ 76 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQ-VKNVLELTVMDEDY----V 76 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcc-cCCEEEEEEEECCC----C
Confidence 78999999999864 5799999999964 456999999999999999999999764 44579999999975 4
Q ss_pred CCCceeEEEEEechhhhccceeceEEEeCCCCCeEEEEEEEE
Q 009539 488 HPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIELQW 529 (532)
Q Consensus 488 ~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~l~~~w 529 (532)
+|++||++.++++++..+.....||+|...+.|++++++.+
T Consensus 77 -~~~~iG~~~~~l~~l~~g~~~~~~~~L~~~~~g~l~~~~~~ 117 (119)
T cd04036 77 -MDDHLGTVLFDVSKLKLGEKVRVTFSLNPQGKEELEVEFLL 117 (119)
T ss_pred -CCcccEEEEEEHHHCCCCCcEEEEEECCCCCCceEEEEEEe
Confidence 78999999999999988888899999998888999988865
No 64
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.75 E-value=1.3e-17 Score=144.34 Aligned_cols=114 Identities=25% Similarity=0.423 Sum_probs=96.8
Q ss_pred EEEEEEeeeecCCC---CCCCCCEEEEEEcCeeEEEeeecCCCCCcccceEEEEecCCCC--CCeEEEEEEEccccccCC
Q 009539 413 LLVVIVHEAQDVEG---KHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPT--NDRLHVEVCSVSSRIGLL 487 (532)
Q Consensus 413 ~L~v~i~~a~~L~~---~~~~dpyv~v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~~~~--~~~l~v~V~d~~~~~~~~ 487 (532)
.|+|+|++|++|+. .+.+||||++++++++++|++++++.||+|||.|.|.+..+.. ...|.++|||++. +
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~----~ 76 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRR----S 76 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCC----C
Confidence 37899999999975 3679999999999999999999999999999999999976421 2479999999875 4
Q ss_pred C-CCceeEEEEEechhhh-ccceeceEEEeCCC-----CCeEEEEEEEEE
Q 009539 488 H-PKETLGYIDINLSDVV-SNKRINEKYHLIDS-----KNGRIQIELQWR 530 (532)
Q Consensus 488 ~-~d~~lG~~~i~L~~l~-~~~~~~~~~~L~~~-----~~G~i~l~~~w~ 530 (532)
+ .+++||++.++++++. .+....+||+|... .+|+|.|++.+.
T Consensus 77 ~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 77 GRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred cCCCCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 4 7899999999999998 35566899999754 379999998764
No 65
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.75 E-value=7.3e-18 Score=145.47 Aligned_cols=110 Identities=25% Similarity=0.376 Sum_probs=91.9
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCC-CCCCcEEEEEEeCCc--CCceeeEeeCCCCCceeecEEEEEeeCC--CCCEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLL-GASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELA 323 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~-g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~ 323 (532)
+....+.|.|+|++|+||+.++.. |.+||||++++.+.. ..++||++++++.||+|||+|.|.+... ....|.+.
T Consensus 10 Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~ 89 (128)
T cd08392 10 YNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVS 89 (128)
T ss_pred EeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEE
Confidence 455678999999999999999875 899999999998654 3356999999999999999999998643 25699999
Q ss_pred EEEccCCCCCCeeEEEEEeCccCCCCC---CeEEEEec
Q 009539 324 VYDWEQVGKHDKMGMNVVPLKELTPEE---PSVKTLDL 358 (532)
Q Consensus 324 v~d~d~~~~d~~iG~~~i~l~~l~~~~---~~~~~l~l 358 (532)
|||.+..+++++||++.|+|+++.... ....|++|
T Consensus 90 V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 90 VWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred EEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 999999999999999999999996543 33455554
No 66
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.75 E-value=2.7e-17 Score=143.92 Aligned_cols=120 Identities=25% Similarity=0.450 Sum_probs=99.0
Q ss_pred EEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCC---------CCCEEEEEEE
Q 009539 255 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP---------ESQAVELAVY 325 (532)
Q Consensus 255 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~---------~~~~L~v~v~ 325 (532)
.|+|+|++|++|+.+|..|.+||||++++++.. ++|+++++|.||+|||+|.|.+... ....|.++||
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~---~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~ 78 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQS---QETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELF 78 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCee---eEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEE
Confidence 589999999999999999999999999997543 5899999999999999999975432 1257999999
Q ss_pred EccCCCCCCeeEEEEE-eCccCCC---CCCeEEEEecccccccCCCCCCccccEEEEEEEEEEc
Q 009539 326 DWEQVGKHDKMGMNVV-PLKELTP---EEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPF 385 (532)
Q Consensus 326 d~d~~~~d~~iG~~~i-~l~~l~~---~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~ 385 (532)
|+|..++|++||++.+ ++..+.. ......|++|.+ .+...|+|.+++++.+.
T Consensus 79 d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~--------~~~~~Geil~~~~~~~~ 134 (135)
T cd04017 79 DQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYK--------GGQSAGELLAAFELIEV 134 (135)
T ss_pred eCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEeec--------CCCchhheeEEeEEEEe
Confidence 9999999999999987 4444442 356678888743 25689999999999874
No 67
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.75 E-value=4.1e-17 Score=141.03 Aligned_cols=113 Identities=20% Similarity=0.346 Sum_probs=97.7
Q ss_pred EEEEEeeeecCCC-CCCCCCEEEEEEcC--eeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCCCCC
Q 009539 414 LVVIVHEAQDVEG-KHHTNPYARILFRG--EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPK 490 (532)
Q Consensus 414 L~v~i~~a~~L~~-~~~~dpyv~v~~~~--~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~~d 490 (532)
|.|+|++|+||+. .+.+||||++++++ ++++|++++++.||+|||.|.|.+.. ....+.|+|||++. .++|
T Consensus 1 l~v~v~~A~~L~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~--~~~~l~~~v~d~~~----~~~~ 74 (126)
T cd08678 1 LLVKNIKANGLSEAAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSP--NSKELLFEVYDNGK----KSDS 74 (126)
T ss_pred CEEEEEEecCCCCCCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCC--CCCEEEEEEEECCC----CCCC
Confidence 5789999999976 35899999999974 56799999999999999999999964 35689999999986 4679
Q ss_pred ceeEEEEEechhhhccceeceEEEeCCC------CCeEEEEEEEEEeC
Q 009539 491 ETLGYIDINLSDVVSNKRINEKYHLIDS------KNGRIQIELQWRTA 532 (532)
Q Consensus 491 ~~lG~~~i~L~~l~~~~~~~~~~~L~~~------~~G~i~l~~~w~p~ 532 (532)
++||++.++++++.......+||+|... ..|+|++++.|.+.
T Consensus 75 ~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 75 KFLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEP 122 (126)
T ss_pred ceEEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEecc
Confidence 9999999999999987777899999744 37999999999763
No 68
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.75 E-value=1.6e-17 Score=143.53 Aligned_cols=110 Identities=35% Similarity=0.547 Sum_probs=95.2
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeC---CCCCEEEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRD---PESQAVELAVY 325 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~---~~~~~L~v~v~ 325 (532)
+....+.|.|+|++|++|+..+..|.+||||++++.+......+|++++++.||+|||+|.|.+.. .....|.++||
T Consensus 11 y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~ 90 (125)
T cd08386 11 YDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVL 90 (125)
T ss_pred ECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEE
Confidence 455678999999999999999988999999999996544445799999999999999999997532 23468999999
Q ss_pred EccCCCCCCeeEEEEEeCccCCCCCCeEEEEec
Q 009539 326 DWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 358 (532)
Q Consensus 326 d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l 358 (532)
|++..+++++||++.++++++..+.....|+.|
T Consensus 91 d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l 123 (125)
T cd08386 91 DYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDL 123 (125)
T ss_pred eCCCCcCCcEeeEEEEecccccCCCCcceEEec
Confidence 999999999999999999999988888888876
No 69
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.74 E-value=9.2e-18 Score=140.38 Aligned_cols=94 Identities=20% Similarity=0.344 Sum_probs=81.9
Q ss_pred EEEEEEEEEcCCCCcCCCC----CCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCC-CCEEEEEEEEcc
Q 009539 254 GILHVKVVKAMNLKKKDLL----GASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE-SQAVELAVYDWE 328 (532)
Q Consensus 254 g~L~V~v~~A~~L~~~d~~----g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~-~~~L~v~v~d~d 328 (532)
|+|.|+|++|++|+..+.. +.+||||+++++++. +||++++++.||+|||+|.|.+.+.. ...|.|+|||++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~---~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d 77 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRV---FRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKD 77 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEe---EeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECC
Confidence 7899999999999987642 358999999997543 58999999999999999999986543 458999999999
Q ss_pred CCCCCCeeEEEEEeCccCCCCC
Q 009539 329 QVGKHDKMGMNVVPLKELTPEE 350 (532)
Q Consensus 329 ~~~~d~~iG~~~i~l~~l~~~~ 350 (532)
..++|++||++.++|+++..+.
T Consensus 78 ~~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 78 KFSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred CCCCCcceEEEEEEHHHHHhhC
Confidence 9999999999999999998664
No 70
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.74 E-value=3.6e-17 Score=141.72 Aligned_cols=117 Identities=31% Similarity=0.488 Sum_probs=100.3
Q ss_pred EEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCC--CCCEEEEEEEEccCCCCCCeeE
Q 009539 260 VVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYDWEQVGKHDKMG 337 (532)
Q Consensus 260 v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d~d~~~~d~~iG 337 (532)
|++|++|+. ..|.+||||++++++.. ++|++++++.||+|||+|.|.+... ..+.|.++|||++..++|++||
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~---~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG 76 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVK---KKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIG 76 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEe---eecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEE
Confidence 689999998 67899999999997654 4899999999999999999999754 4689999999999988999999
Q ss_pred EEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEEccC
Q 009539 338 MNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKE 387 (532)
Q Consensus 338 ~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~ 387 (532)
++.++++++..+.....|++|... ++....|+|+++++|.|...
T Consensus 77 ~~~~~l~~l~~~~~~~~~~~L~~~------~~~~~~~~l~l~~~~~~~~~ 120 (127)
T cd08373 77 SATVSLQDLVSEGLLEVTEPLLDS------NGRPTGATISLEVSYQPPDG 120 (127)
T ss_pred EEEEEhhHcccCCceEEEEeCcCC------CCCcccEEEEEEEEEeCCCC
Confidence 999999999988888888888432 12345799999999998643
No 71
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.74 E-value=2.8e-17 Score=141.39 Aligned_cols=118 Identities=28% Similarity=0.502 Sum_probs=96.1
Q ss_pred EEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCC--C
Q 009539 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGK--H 333 (532)
Q Consensus 256 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~--d 333 (532)
|+|+|++|++|+..+..|.+||||++++++. ..++|++++++.||.|||+|.|.+.. .+.|.++|||++..++ |
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~--~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d 77 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGG--QTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQ 77 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCc--cceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCC
Confidence 7899999999999998899999999999753 24699999999999999999999965 6899999999998765 5
Q ss_pred CeeEEEEEeCccCCCCC-CeEEEEecccccccCCCCCCccccEEEEEE
Q 009539 334 DKMGMNVVPLKELTPEE-PSVKTLDLLKNMDLNDGQNEKSRGQLVVEF 380 (532)
Q Consensus 334 ~~iG~~~i~l~~l~~~~-~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l 380 (532)
++||++.+++.++.... ....|+++.+. .. ...+...|+|.+++
T Consensus 78 ~~lG~~~i~l~~l~~~~~~~~~~~~l~~~-~~--~~~~~~~G~v~~~~ 122 (123)
T cd08382 78 GFLGCVRIRANAVLPLKDTGYQRLDLRKL-KK--SDNLSVRGKIVVSL 122 (123)
T ss_pred ceEeEEEEEHHHccccCCCccceeEeecC-CC--CCCceEeeEEEEEe
Confidence 79999999999997654 33567766332 11 12456689988876
No 72
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.74 E-value=2.7e-17 Score=141.89 Aligned_cols=115 Identities=21% Similarity=0.288 Sum_probs=98.7
Q ss_pred ccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEEcC---eeEEEe
Q 009539 373 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG---EERKTK 446 (532)
Q Consensus 373 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~---~~~kT~ 446 (532)
.|+|.+++.|.+. .+.|.|+|++|+||+.. +.+||||++++.+ +.++|+
T Consensus 2 ~G~l~~~l~y~~~-------------------------~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~ 56 (124)
T cd08385 2 LGKLQFSLDYDFQ-------------------------SNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETK 56 (124)
T ss_pred ccEEEEEEEEeCC-------------------------CCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecc
Confidence 6999999999863 68999999999999863 5799999999853 356999
Q ss_pred eecCCCCCcccceEEEEecCCCC-CCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeC
Q 009539 447 HVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLI 516 (532)
Q Consensus 447 vv~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~ 516 (532)
+++++.||+|||.|.|.+..... ...|.++|||++. ++.+++||++.++|+++..+....+||+|.
T Consensus 57 v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~----~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 57 VHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDR----FSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred cCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCC----CCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 99999999999999999865322 3589999999975 578999999999999997777788999985
No 73
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.74 E-value=8.3e-17 Score=140.37 Aligned_cols=112 Identities=21% Similarity=0.392 Sum_probs=98.0
Q ss_pred ceEEEEEEeeeecCCCC-------------CCCCCEEEEEEcCee-EEEeeecCCCCCcccceEEEEecCCCCCCeEEEE
Q 009539 411 GGLLVVIVHEAQDVEGK-------------HHTNPYARILFRGEE-RKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVE 476 (532)
Q Consensus 411 ~g~L~v~i~~a~~L~~~-------------~~~dpyv~v~~~~~~-~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~ 476 (532)
.|.|+|+|++|++|... +.+||||+++++++. .+|++++++.||.|||+|+|.+.+ ...+.+.
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~---~~~l~~~ 79 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN---GRNLELT 79 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC---CCEEEEE
Confidence 68999999999999752 358999999999876 599999999999999999999964 3689999
Q ss_pred EEEccccccCCCCCceeEEEEEechhhhc--cceeceEEEeCCCCCeEEEEEEEEEe
Q 009539 477 VCSVSSRIGLLHPKETLGYIDINLSDVVS--NKRINEKYHLIDSKNGRIQIELQWRT 531 (532)
Q Consensus 477 V~d~~~~~~~~~~d~~lG~~~i~L~~l~~--~~~~~~~~~L~~~~~G~i~l~~~w~p 531 (532)
|+|++. ++.+++||++.++|+++.. +.....||+|. ++|+|+|++.|+.
T Consensus 80 v~d~~~----~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--~~G~l~l~~~~~~ 130 (132)
T cd04014 80 VFHDAA----IGPDDFVANCTISFEDLIQRGSGSFDLWVDLE--PQGKLHVKIELKG 130 (132)
T ss_pred EEeCCC----CCCCceEEEEEEEhHHhcccCCCcccEEEEcc--CCcEEEEEEEEec
Confidence 999875 5678999999999999987 45678999997 5899999999985
No 74
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.73 E-value=1.8e-17 Score=142.56 Aligned_cols=110 Identities=32% Similarity=0.430 Sum_probs=95.9
Q ss_pred cCCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEE-eeC--CCCCEEEEEE
Q 009539 248 AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFT-VRD--PESQAVELAV 324 (532)
Q Consensus 248 ~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~-v~~--~~~~~L~v~v 324 (532)
.+....+.|.|+|++|+||+..+..|.+||||++.+.+.....++|+++++ .||+|||+|.|. +.. .....|.++|
T Consensus 10 ~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V 88 (124)
T cd08389 10 EYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRL 88 (124)
T ss_pred EECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEE
Confidence 355667899999999999999998889999999998766555679999888 999999999998 542 2367899999
Q ss_pred EEccCCCCCCeeEEEEEeCccCCCCCCeEEEEec
Q 009539 325 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 358 (532)
Q Consensus 325 ~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l 358 (532)
||++..+++++||++.++|+++..+.....|++|
T Consensus 89 ~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L 122 (124)
T cd08389 89 YGVERMRKERLIGEKVVPLSQLNLEGETTVWLTL 122 (124)
T ss_pred EECCCcccCceEEEEEEeccccCCCCCceEEEeC
Confidence 9999999999999999999999888888888876
No 75
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.73 E-value=2.9e-17 Score=142.31 Aligned_cols=118 Identities=27% Similarity=0.407 Sum_probs=99.0
Q ss_pred cccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEEc-----CeeE
Q 009539 372 SRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFR-----GEER 443 (532)
Q Consensus 372 ~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~-----~~~~ 443 (532)
+.|+|.+++.|.+. .+.|.|+|++|+||+.. +.+||||++++. ..++
T Consensus 1 ~~G~l~~~l~y~~~-------------------------~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~ 55 (127)
T cd04030 1 PLGRIQLTIRYSSQ-------------------------RQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRR 55 (127)
T ss_pred CCeEEEEEEEEeCC-------------------------CCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceE
Confidence 47999999999863 68999999999999863 689999999995 3467
Q ss_pred EEeeecCCCCCcccceEEEEecCCC-CCCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeC
Q 009539 444 KTKHVKKNRDPRWEEEFQFMLEEPP-TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLI 516 (532)
Q Consensus 444 kT~vv~~t~nP~w~e~f~f~v~~~~-~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~ 516 (532)
||++++++.||+|||+|.|.+.... ....+.+.|||++... .+.+++||++.++|.++..++....||+|.
T Consensus 56 kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~~~--~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 56 KTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKSFL--SREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred ecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECCccc--CCCCceEEEEEEecccccccCCccceEECc
Confidence 9999999999999999999986432 2358999999987510 157899999999999998777788999984
No 76
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.73 E-value=3.9e-17 Score=137.80 Aligned_cols=97 Identities=23% Similarity=0.293 Sum_probs=85.9
Q ss_pred eEEEEEEeeeecCCCCCCCCCEEEEEEcCeeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCCCCCc
Q 009539 412 GLLVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKE 491 (532)
Q Consensus 412 g~L~v~i~~a~~L~~~~~~dpyv~v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~~d~ 491 (532)
+.|.|+|++|++|+..+..||||++.+++++.+|+++++ .||.|||.|.|.+.+. ++.|.|+|||++. ..|+
T Consensus 2 ~~L~V~Vv~Ar~L~~~~~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~--~~~L~v~V~dkd~-----~~DD 73 (127)
T cd08394 2 SLLCVLVKKAKLDGAPDKFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRL--DLGLVIELWNKGL-----IWDT 73 (127)
T ss_pred ceEEEEEEEeeCCCCCCCCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCC--CCEEEEEEEeCCC-----cCCC
Confidence 689999999999998888899999999998889999988 5999999999999764 3459999999873 3899
Q ss_pred eeEEEEEechhhhcccee--ceEEEeC
Q 009539 492 TLGYIDINLSDVVSNKRI--NEKYHLI 516 (532)
Q Consensus 492 ~lG~~~i~L~~l~~~~~~--~~~~~L~ 516 (532)
+||++.++|+++..+... .+||+|.
T Consensus 74 ~lG~v~i~L~~v~~~~~~~~~~Wy~L~ 100 (127)
T cd08394 74 LVGTVWIPLSTIRQSNEEGPGEWLTLD 100 (127)
T ss_pred ceEEEEEEhHHcccCCCCCCCccEecC
Confidence 999999999999876543 7999996
No 77
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.73 E-value=7e-17 Score=138.23 Aligned_cols=110 Identities=20% Similarity=0.310 Sum_probs=94.9
Q ss_pred EEEEEeeeecCCCC----CCCCCEEEEEEcCe-eEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCCC
Q 009539 414 LVVIVHEAQDVEGK----HHTNPYARILFRGE-ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLH 488 (532)
Q Consensus 414 L~v~i~~a~~L~~~----~~~dpyv~v~~~~~-~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~ 488 (532)
|.|.|.+|+||+.. +.+||||+++++++ ..||+++++|.||.|||+|+|.+.+. ...+.+.|||++. ++
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~--~~~l~~~v~d~~~----~~ 75 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRT--FRHLSFYIYDRDV----LR 75 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCC--CCEEEEEEEECCC----CC
Confidence 67899999999863 47899999999776 46999999999999999999999753 3589999999985 67
Q ss_pred CCceeEEEEEechhhhccceeceEEEeCCC-----CCeEEEEEEEE
Q 009539 489 PKETLGYIDINLSDVVSNKRINEKYHLIDS-----KNGRIQIELQW 529 (532)
Q Consensus 489 ~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~-----~~G~i~l~~~w 529 (532)
+|++||++.++++++..+...+.||+|... ..|+|+|++.+
T Consensus 76 ~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 76 RDSVIGKVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred CCceEEEEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEEC
Confidence 899999999999999887777899999742 26999998864
No 78
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.73 E-value=3.7e-17 Score=141.24 Aligned_cols=114 Identities=25% Similarity=0.444 Sum_probs=94.4
Q ss_pred ccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEEcC-----eeEE
Q 009539 373 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----EERK 444 (532)
Q Consensus 373 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~-----~~~k 444 (532)
.|+|++++.|.+. .+.|.|+|++|+||+.. +.+||||++++.+ ..+|
T Consensus 2 ~G~l~~~l~~~~~-------------------------~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~k 56 (125)
T cd04031 2 TGRIQIQLWYDKV-------------------------TSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRR 56 (125)
T ss_pred cEEEEEEEEEeCC-------------------------CCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCcccccc
Confidence 6999999999863 68999999999999763 5799999999965 4569
Q ss_pred EeeecCCCCCcccceEEEEecCCC--CCCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeC
Q 009539 445 TKHVKKNRDPRWEEEFQFMLEEPP--TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLI 516 (532)
Q Consensus 445 T~vv~~t~nP~w~e~f~f~v~~~~--~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~ 516 (532)
|++++++.||+|||.|.|.+.... ....|.++|||++. ++.+++||++.++|++.. .....+||+|+
T Consensus 57 T~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~~----~~~~~~iG~~~i~l~~~~-~~~~~~W~~L~ 125 (125)
T cd04031 57 TKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDR----DGENDFLGEVVIDLADAL-LDDEPHWYPLQ 125 (125)
T ss_pred ccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeCCC----CCCCcEeeEEEEeccccc-ccCCcceEECc
Confidence 999999999999999999864321 23589999999985 567999999999999933 33346899984
No 79
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.73 E-value=4.3e-17 Score=139.66 Aligned_cols=105 Identities=26% Similarity=0.390 Sum_probs=87.9
Q ss_pred ccCCCCCc-cCCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeC-CCC
Q 009539 240 VPILDPSK-AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRD-PES 317 (532)
Q Consensus 240 ~~l~~~~~-~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~-~~~ 317 (532)
-|++++.. ......|.|+|+|++|++|+. +..|.+||||++++++. .++|++++++.||+|||+|.|.... ...
T Consensus 13 ~~~~~~~~~~~~~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~---~~kT~vi~~t~nPvWNE~F~f~~~~~~~~ 88 (127)
T cd04032 13 SPNVNSNCCPTRRGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQ---EKRTEVIWNNNNPRWNATFDFGSVELSPG 88 (127)
T ss_pred CCCcCCCcCcCcCCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCc---cccCceecCCCCCcCCCEEEEecccCCCC
Confidence 34554443 346678999999999999984 66788999999999865 3599999999999999999997533 346
Q ss_pred CEEEEEEEEccCCCCCCeeEEEEEeCccCCC
Q 009539 318 QAVELAVYDWEQVGKHDKMGMNVVPLKELTP 348 (532)
Q Consensus 318 ~~L~v~v~d~d~~~~d~~iG~~~i~l~~l~~ 348 (532)
+.|+|+|||++..++|++||++.+++.....
T Consensus 89 ~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~~ 119 (127)
T cd04032 89 GKLRFEVWDRDNGWDDDLLGTCSVVPEAGVH 119 (127)
T ss_pred CEEEEEEEeCCCCCCCCeeEEEEEEecCCce
Confidence 8999999999999999999999999997764
No 80
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.73 E-value=4.5e-17 Score=146.47 Aligned_cols=128 Identities=23% Similarity=0.330 Sum_probs=101.3
Q ss_pred ccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEEc-----CeeEE
Q 009539 373 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFR-----GEERK 444 (532)
Q Consensus 373 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~-----~~~~k 444 (532)
+|+|.++++|.|...+.. +.......|.|.|+|++|+||+.. +.+||||++++. ...+|
T Consensus 1 ~G~l~~~l~y~~~~~~~~-------------~~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~k 67 (162)
T cd04020 1 RGELKVALKYVPPESEGA-------------LKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQK 67 (162)
T ss_pred CceEEEEEEecCcccccc-------------ccccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCccee
Confidence 599999999999754321 122334689999999999999864 579999999983 24579
Q ss_pred EeeecCCCCCcccceEEEEecCC-C-CCCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCC
Q 009539 445 TKHVKKNRDPRWEEEFQFMLEEP-P-TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLID 517 (532)
Q Consensus 445 T~vv~~t~nP~w~e~f~f~v~~~-~-~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~ 517 (532)
|++++++.||.|||.|.|.+... . .+..|.|+|||++. ++++++||++.++++++........||.+.+
T Consensus 68 T~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~----~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~ 138 (162)
T cd04020 68 TPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDK----LSSNDFLGGVRLGLGTGKSYGQAVDWMDSTG 138 (162)
T ss_pred CCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCC----CCCCceEEEEEEeCCccccCCCccccccCCh
Confidence 99999999999999999986422 1 23479999999986 5789999999999999876666677777753
No 81
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.73 E-value=2.3e-17 Score=142.12 Aligned_cols=110 Identities=27% Similarity=0.479 Sum_probs=93.5
Q ss_pred CCCCeEEEEEEEEEcCCCCcCC-CCCCCCcEEEEEEeCCc--CCceeeEeeCCCCCceeecEEEEEeeCC--CCCEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKD-LLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELA 323 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d-~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~ 323 (532)
++...+.|.|+|++|+||+..+ ..|.+||||++++.+.. ...++|++++++.||+|||+|.|.+... ....|.++
T Consensus 9 y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~ 88 (123)
T cd08521 9 YNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLS 88 (123)
T ss_pred EeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEE
Confidence 4556789999999999999988 67899999999996442 2357999999999999999999998643 25689999
Q ss_pred EEEccCCCCCCeeEEEEEeCccCCCCCCeEEEEec
Q 009539 324 VYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 358 (532)
Q Consensus 324 v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l 358 (532)
|||++..+++++||++.++++++..+.....|++|
T Consensus 89 v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 89 VWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred EEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 99999999999999999999999776666777654
No 82
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.73 E-value=4.5e-17 Score=136.03 Aligned_cols=98 Identities=26% Similarity=0.537 Sum_probs=86.9
Q ss_pred EEEEEEeeeecCCCC---CCCCCEEEEEEcCeeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCCCC
Q 009539 413 LLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP 489 (532)
Q Consensus 413 ~L~v~i~~a~~L~~~---~~~dpyv~v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~~ 489 (532)
.|.|+|++|+||+.. +.+||||+++++++.++|++++++.||+|||.|+|.+.++ ..+.+.|+|+|++.
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~-~~~~l~v~v~d~~~------- 72 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNP-ENQELEIEVKDDKT------- 72 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCC-CCCEEEEEEEECCC-------
Confidence 378999999999863 6899999999999999999999999999999999999875 45689999999862
Q ss_pred CceeEEEEEechhhhccc--eeceEEEeCCC
Q 009539 490 KETLGYIDINLSDVVSNK--RINEKYHLIDS 518 (532)
Q Consensus 490 d~~lG~~~i~L~~l~~~~--~~~~~~~L~~~ 518 (532)
+++||++.++|.++.... ..++||+|.++
T Consensus 73 ~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~~ 103 (105)
T cd04050 73 GKSLGSLTLPLSELLKEPDLTLDQPFPLDNS 103 (105)
T ss_pred CCccEEEEEEHHHhhccccceeeeeEecCCC
Confidence 789999999999998754 57899999864
No 83
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.73 E-value=1.6e-17 Score=141.63 Aligned_cols=106 Identities=20% Similarity=0.324 Sum_probs=88.5
Q ss_pred CeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCc--CCceeeEeeCCCCCceeecEEEEEeeCCC-CCEEEEEEEEcc
Q 009539 252 PVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPE-SQAVELAVYDWE 328 (532)
Q Consensus 252 ~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~-~~~L~v~v~d~d 328 (532)
..+.|.|+|++|+||+..+ .|.+||||++++.+.. ...+||++++++.||+|||+|.|.+.... ...|.++|||++
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~ 88 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKL 88 (119)
T ss_pred cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCC
Confidence 3578999999999999998 7899999999998643 23468999999999999999999986432 357899999998
Q ss_pred CCC-CCCeeEEEEEeCccCCCCCCeEEEEec
Q 009539 329 QVG-KHDKMGMNVVPLKELTPEEPSVKTLDL 358 (532)
Q Consensus 329 ~~~-~d~~iG~~~i~l~~l~~~~~~~~~l~l 358 (532)
... ++++||.+.+++.++..+.....|+.|
T Consensus 89 ~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 89 SKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 765 478999999999999876666667643
No 84
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.73 E-value=3.4e-17 Score=141.94 Aligned_cols=110 Identities=30% Similarity=0.428 Sum_probs=94.4
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCc--CCceeeEeeCCCCCceeecEEEEEeeCC--CCCEEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAV 324 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v 324 (532)
+....+.|+|+|++|+||+..+..+.+||||++++.+.. ...++|++++++.||+|||+|.|.+... ....|.+.|
T Consensus 11 y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v 90 (127)
T cd04030 11 YSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAV 90 (127)
T ss_pred EeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEE
Confidence 445678999999999999999988999999999997543 3457999999999999999999998542 357899999
Q ss_pred EEccCC--CCCCeeEEEEEeCccCCCCCCeEEEEec
Q 009539 325 YDWEQV--GKHDKMGMNVVPLKELTPEEPSVKTLDL 358 (532)
Q Consensus 325 ~d~d~~--~~d~~iG~~~i~l~~l~~~~~~~~~l~l 358 (532)
||++.. +++++||++.+++.++..+.....|++|
T Consensus 91 ~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 91 KNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred EECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence 999875 6899999999999999877777778765
No 85
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.73 E-value=2.8e-17 Score=140.59 Aligned_cols=112 Identities=24% Similarity=0.379 Sum_probs=93.6
Q ss_pred EEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCC---CCCCCCEEEEEEcC------eeEEE
Q 009539 375 QLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEG---KHHTNPYARILFRG------EERKT 445 (532)
Q Consensus 375 ~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~---~~~~dpyv~v~~~~------~~~kT 445 (532)
+|.+++.|.|. .+.|.|+|++|+||+. .+.+||||++++.. .++||
T Consensus 2 ~i~~sL~Y~~~-------------------------~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT 56 (124)
T cd08680 2 QVQIGLRYDSG-------------------------DSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRT 56 (124)
T ss_pred eEEEEEEECCC-------------------------CCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEc
Confidence 58889999863 7889999999999976 36799999999842 35699
Q ss_pred eeecCCCCCcccceEEEEecCCCCC-CeEEEEEEEccccccCCCCCceeEEEEEechhhhcc-ceeceEEEe
Q 009539 446 KHVKKNRDPRWEEEFQFMLEEPPTN-DRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSN-KRINEKYHL 515 (532)
Q Consensus 446 ~vv~~t~nP~w~e~f~f~v~~~~~~-~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~-~~~~~~~~L 515 (532)
++++++.||+|||+|+|.+...... ..|.++||+.+. ++++++||.+.++|+++... ....+||.|
T Consensus 57 ~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~~----~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 57 KALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSVGP----DQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred CccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeCCC----CCceeEEEEEEEEhhhccCCCccccccccC
Confidence 9999999999999999998754233 489999999975 57899999999999999554 457789976
No 86
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.73 E-value=5.4e-17 Score=139.80 Aligned_cols=111 Identities=32% Similarity=0.468 Sum_probs=96.4
Q ss_pred cCCCCeEEEEEEEEEcCCCCcCC-CCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCC--CCEEEEEE
Q 009539 248 AYRRPVGILHVKVVKAMNLKKKD-LLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE--SQAVELAV 324 (532)
Q Consensus 248 ~~~~~~g~L~V~v~~A~~L~~~d-~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~--~~~L~v~v 324 (532)
.++...+.|.|+|++|++|+..+ ..+.+||||++++.+.....++|++++++.||+|||+|.|.+.... ...|.|+|
T Consensus 8 ~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v 87 (123)
T cd08390 8 QYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSV 87 (123)
T ss_pred EECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEE
Confidence 35567789999999999999998 6788999999999654444578999999999999999999986532 45899999
Q ss_pred EEccCCCCCCeeEEEEEeCccCCCCCCeEEEEec
Q 009539 325 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 358 (532)
Q Consensus 325 ~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l 358 (532)
||++..+++++||++.++|+++........|++|
T Consensus 88 ~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L 121 (123)
T cd08390 88 YDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDL 121 (123)
T ss_pred EECCcCCCCcEEEEEEEeccceecCCCceEEEeC
Confidence 9999888899999999999999988888888876
No 87
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.72 E-value=2.6e-17 Score=137.46 Aligned_cols=99 Identities=32% Similarity=0.507 Sum_probs=87.3
Q ss_pred EEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCCC
Q 009539 255 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHD 334 (532)
Q Consensus 255 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~ 334 (532)
.|.|+|++|++|+..+..|.+||||+++++++ .++|++++++.||+|||+|.|.+.++..+.|.|+|||++. ++
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~---~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~ 74 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKT---TQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GK 74 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCE---EEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CC
Confidence 38899999999999988899999999999874 3589999999999999999999988777899999999875 88
Q ss_pred eeEEEEEeCccCCCCC--CeEEEEecc
Q 009539 335 KMGMNVVPLKELTPEE--PSVKTLDLL 359 (532)
Q Consensus 335 ~iG~~~i~l~~l~~~~--~~~~~l~l~ 359 (532)
+||++.++|.++.... ....|++|.
T Consensus 75 ~iG~~~i~l~~l~~~~~~~~~~w~~L~ 101 (105)
T cd04050 75 SLGSLTLPLSELLKEPDLTLDQPFPLD 101 (105)
T ss_pred ccEEEEEEHHHhhccccceeeeeEecC
Confidence 9999999999998654 456788773
No 88
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.72 E-value=8.8e-17 Score=136.74 Aligned_cols=114 Identities=37% Similarity=0.589 Sum_probs=98.4
Q ss_pred EEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCCCe
Q 009539 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDK 335 (532)
Q Consensus 256 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~ 335 (532)
|+|+|++|++|+..+..|.+||||++.+.+.. .++|+++.++.||.|||+|.|.+.....+.+.|+|||++..+++++
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~--~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~ 78 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEK--VFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDL 78 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCc--ceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCc
Confidence 57999999999999888899999999997643 3699999999999999999999977667899999999998889999
Q ss_pred eEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEE
Q 009539 336 MGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVV 378 (532)
Q Consensus 336 iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l 378 (532)
||++.+++.++..+.....|++|.+ +++...|.|.+
T Consensus 79 iG~~~~~l~~l~~~~~~~~~~~L~~-------~g~~~~~~~~~ 114 (115)
T cd04040 79 LGSAYIDLSDLEPEETTELTLPLDG-------QGGGKLGAVFL 114 (115)
T ss_pred eEEEEEEHHHcCCCCcEEEEEECcC-------CCCccCceEEc
Confidence 9999999999998888888998853 24556666643
No 89
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.72 E-value=7.6e-17 Score=136.03 Aligned_cols=100 Identities=24% Similarity=0.470 Sum_probs=88.1
Q ss_pred CCCCCCEEEEEEcCe-eEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCCCCCceeEEEEEechhhhc
Q 009539 427 KHHTNPYARILFRGE-ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVS 505 (532)
Q Consensus 427 ~~~~dpyv~v~~~~~-~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~ 505 (532)
.|.+||||+++++++ ..+|++++++.||.|||.|+|.+.+. ..+.|.|+|+|++. + +|++||++.++|++++.
T Consensus 10 ~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~-~~~~l~i~v~d~~~----~-~d~~iG~~~v~L~~l~~ 83 (111)
T cd04052 10 TGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDR-RKSRVTVVVKDDRD----R-HDPVLGSVSISLNDLID 83 (111)
T ss_pred CCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCc-CCCEEEEEEEECCC----C-CCCeEEEEEecHHHHHh
Confidence 367999999999886 46999999999999999999999875 45689999999985 5 79999999999999976
Q ss_pred c-ceeceEEEeCCCCCeEEEEEEEEEeC
Q 009539 506 N-KRINEKYHLIDSKNGRIQIELQWRTA 532 (532)
Q Consensus 506 ~-~~~~~~~~L~~~~~G~i~l~~~w~p~ 532 (532)
. ....+||+|.+.++|+|+++++|+|+
T Consensus 84 ~~~~~~~w~~L~~~~~G~i~~~~~~~p~ 111 (111)
T cd04052 84 ATSVGQQWFPLSGNGQGRIRISALWKPV 111 (111)
T ss_pred hhhccceeEECCCCCCCEEEEEEEEecC
Confidence 4 44689999998789999999999996
No 90
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.72 E-value=1.7e-17 Score=144.34 Aligned_cols=115 Identities=20% Similarity=0.353 Sum_probs=93.5
Q ss_pred ccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC-----CCCCCEEEEEEcCe-----e
Q 009539 373 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK-----HHTNPYARILFRGE-----E 442 (532)
Q Consensus 373 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~-----~~~dpyv~v~~~~~-----~ 442 (532)
.|+|.++++|.|. .+.|.|.|++|+||+.. +.+||||++++... +
T Consensus 1 ~Gel~~sL~Y~~~-------------------------~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~k 55 (138)
T cd08407 1 TGEVLLSISYLPA-------------------------ANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKK 55 (138)
T ss_pred CCEEEEEEEEeCC-------------------------CCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccce
Confidence 4999999999974 78899999999999763 34899999998652 4
Q ss_pred EEEeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCC
Q 009539 443 RKTKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDS 518 (532)
Q Consensus 443 ~kT~vv~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~ 518 (532)
+||++++++.||+|||.|.|.+..... +..|.++|||++. ++++++||++.+++.. .+....+|.++..+
T Consensus 56 kkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~d~----~~~~d~iG~v~lg~~~--~g~~~~hW~~ml~~ 126 (138)
T cd08407 56 KQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLNQDS----PGQSLPLGRCSLGLHT--SGTERQHWEEMLDN 126 (138)
T ss_pred eccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEeCCC----CcCcceeceEEecCcC--CCcHHHHHHHHHhC
Confidence 599999999999999999999976433 3479999999986 6789999999999975 33344566665444
No 91
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.72 E-value=4.8e-17 Score=140.56 Aligned_cols=109 Identities=27% Similarity=0.497 Sum_probs=89.8
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCc--CCceeeEeeCCCCCceeecEEEEEeeCC---CCCEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDP---ESQAVELA 323 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~---~~~~L~v~ 323 (532)
++...+.|.|+|++|++|+..+..+.+||||++++.+.. ...++|++++++.||+|||+|.|.+... ....|.|+
T Consensus 11 ~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~ 90 (125)
T cd04031 11 YDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVT 90 (125)
T ss_pred EeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEE
Confidence 444568999999999999999988999999999997532 2346899999999999999999986442 35789999
Q ss_pred EEEccCCCCCCeeEEEEEeCccCCCCCCeEEEEec
Q 009539 324 VYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 358 (532)
Q Consensus 324 v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l 358 (532)
|||++..+++++||++.++|++... .....|++|
T Consensus 91 V~d~~~~~~~~~iG~~~i~l~~~~~-~~~~~W~~L 124 (125)
T cd04031 91 VWDYDRDGENDFLGEVVIDLADALL-DDEPHWYPL 124 (125)
T ss_pred EEeCCCCCCCcEeeEEEEecccccc-cCCcceEEC
Confidence 9999998899999999999998332 334566665
No 92
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.72 E-value=3.4e-17 Score=144.79 Aligned_cols=108 Identities=34% Similarity=0.532 Sum_probs=91.8
Q ss_pred CccCCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcC--------------------------CceeeEeeCCC
Q 009539 246 SKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKL--------------------------PSKKTTVKHKN 299 (532)
Q Consensus 246 ~~~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~--------------------------~~~~T~v~~~t 299 (532)
......+.+.|.|+|++|++|...|..|.+||||++.+.+... ..++|++++++
T Consensus 20 ~~~~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~t 99 (153)
T cd08676 20 VREAEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQT 99 (153)
T ss_pred HHhcCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCC
Confidence 3456778999999999999999999999999999999964311 23689999999
Q ss_pred CCceeecEEEEEeeCCCCCEEEEEEEEccCCCCCCeeEEEEEeCccCCCCCCeEEEEec
Q 009539 300 LNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 358 (532)
Q Consensus 300 ~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l 358 (532)
.||+|||+|.|.+..+..+.|.|+|||++ +++||++.++++++.. .....|++|
T Consensus 100 lnP~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~-~~~d~W~~L 153 (153)
T cd08676 100 LNPVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPS-CGLDSWFKL 153 (153)
T ss_pred CCCccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence 99999999999998766789999999997 8999999999999983 345666653
No 93
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.72 E-value=1.7e-16 Score=137.47 Aligned_cols=111 Identities=24% Similarity=0.494 Sum_probs=97.5
Q ss_pred EeeeecCCC-CCCCCCEEEEEEcCeeEEEeeecCCCCCcccceEEEEecCCC-CCCeEEEEEEEccccccCCCCCceeEE
Q 009539 418 VHEAQDVEG-KHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPP-TNDRLHVEVCSVSSRIGLLHPKETLGY 495 (532)
Q Consensus 418 i~~a~~L~~-~~~~dpyv~v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~~~-~~~~l~v~V~d~~~~~~~~~~d~~lG~ 495 (532)
|++|+||+. .+.+||||++++++.+++|++++++.||+|||.|.|.+.... ..+.+.++|||++. ++.|++||+
T Consensus 2 vi~a~~L~~~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~----~~~d~~iG~ 77 (127)
T cd08373 2 VVSLKNLPGLKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEK----VGRNRLIGS 77 (127)
T ss_pred eEEeeCCcccCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCC----CCCCceEEE
Confidence 678999987 468999999999999999999999999999999999997642 34689999999975 567899999
Q ss_pred EEEechhhhccceeceEEEeCCCC----CeEEEEEEEEEeC
Q 009539 496 IDINLSDVVSNKRINEKYHLIDSK----NGRIQIELQWRTA 532 (532)
Q Consensus 496 ~~i~L~~l~~~~~~~~~~~L~~~~----~G~i~l~~~w~p~ 532 (532)
+.++|+++..+.....|++|.+.+ .|+|++++.|.|+
T Consensus 78 ~~~~l~~l~~~~~~~~~~~L~~~~~~~~~~~l~l~~~~~~~ 118 (127)
T cd08373 78 ATVSLQDLVSEGLLEVTEPLLDSNGRPTGATISLEVSYQPP 118 (127)
T ss_pred EEEEhhHcccCCceEEEEeCcCCCCCcccEEEEEEEEEeCC
Confidence 999999999888888999996442 5999999999985
No 94
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.71 E-value=1.1e-16 Score=135.80 Aligned_cols=101 Identities=23% Similarity=0.308 Sum_probs=85.3
Q ss_pred EEEEEEeeeecCCCC--CCCCCEEEEEEcC-------eeEEEeeecCCCCCcccceEEEEecCC--CCCCeEEEEEEEcc
Q 009539 413 LLVVIVHEAQDVEGK--HHTNPYARILFRG-------EERKTKHVKKNRDPRWEEEFQFMLEEP--PTNDRLHVEVCSVS 481 (532)
Q Consensus 413 ~L~v~i~~a~~L~~~--~~~dpyv~v~~~~-------~~~kT~vv~~t~nP~w~e~f~f~v~~~--~~~~~l~v~V~d~~ 481 (532)
.|+|+|++|+||+.. |.+||||+|++.+ ++++|+++.++.||+|||+|+|.+... .....|.+.|+|++
T Consensus 1 kL~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d 80 (120)
T cd08395 1 KVTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC 80 (120)
T ss_pred CEEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence 378999999999874 6899999999842 245899999999999999999999753 12246999999987
Q ss_pred ccccCCCCCceeEEEEEechhhhccceeceEEEeCC
Q 009539 482 SRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLID 517 (532)
Q Consensus 482 ~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~ 517 (532)
. .+.+++||++.++|+++..++....|++|..
T Consensus 81 ~----~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~ 112 (120)
T cd08395 81 F----ARDDRLVGVTVLQLRDIAQAGSCACWLPLGR 112 (120)
T ss_pred c----cCCCCEEEEEEEEHHHCcCCCcEEEEEECcC
Confidence 4 4678999999999999998888889999964
No 95
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.71 E-value=1.6e-16 Score=137.13 Aligned_cols=114 Identities=20% Similarity=0.426 Sum_probs=96.4
Q ss_pred eEEEEEEeeeecCCCC----CCCCCEEEEEEcC--eeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccccc
Q 009539 412 GLLVVIVHEAQDVEGK----HHTNPYARILFRG--EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIG 485 (532)
Q Consensus 412 g~L~v~i~~a~~L~~~----~~~dpyv~v~~~~--~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~ 485 (532)
|.|.|+|++|+||+.. +.+||||++++++ +..+|++++++.||.|||.|.|.+.. ..+.|.++|||++.
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~--~~~~l~~~v~d~~~--- 76 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNS--LTEPLNLTVYDFND--- 76 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCC--CCCEEEEEEEecCC---
Confidence 7899999999999852 4689999999988 67899999999999999999999873 45789999999985
Q ss_pred CCCCCceeEEEEEechhhhccceece-EEEeC--CCCCeEEEEEEEEEe
Q 009539 486 LLHPKETLGYIDINLSDVVSNKRINE-KYHLI--DSKNGRIQIELQWRT 531 (532)
Q Consensus 486 ~~~~d~~lG~~~i~L~~l~~~~~~~~-~~~L~--~~~~G~i~l~~~w~p 531 (532)
.+.|++||++.++|.++........ ++.+. +...|+|+++++|.|
T Consensus 77 -~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 77 -KRKDKLIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVGELNYDLRFFP 124 (124)
T ss_pred -CCCCceeEEEEEEHHHhccCccccCcchhhhcCCccceEEEEEEEeCC
Confidence 4679999999999999998765543 34443 334799999999987
No 96
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.71 E-value=6.6e-17 Score=139.67 Aligned_cols=115 Identities=25% Similarity=0.387 Sum_probs=95.8
Q ss_pred EEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeC-CCCCceeecEEEEEeeCCC----CCEEEEEEEEccC
Q 009539 255 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKH-KNLNPEWNEEYNFTVRDPE----SQAVELAVYDWEQ 329 (532)
Q Consensus 255 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~-~t~nP~Wne~f~f~v~~~~----~~~L~v~v~d~d~ 329 (532)
+|+|+|++|++|+..+..+.+||||++++++.. .++|++.. ++.||.|||+|.|.+.... ...|.|+|||++.
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~--~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~ 78 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSH--KQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP 78 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCc--ccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC
Confidence 489999999999999988999999999998722 24888864 6899999999999997763 6889999999998
Q ss_pred CCCCCeeEEEEEeCccCCCCCC-----eEEEEecccccccCCCCCCccccEEEE
Q 009539 330 VGKHDKMGMNVVPLKELTPEEP-----SVKTLDLLKNMDLNDGQNEKSRGQLVV 378 (532)
Q Consensus 330 ~~~d~~iG~~~i~l~~l~~~~~-----~~~~l~l~~~~~~~~~~~~~~~G~l~l 378 (532)
.++|++||++.+++.++..+.. ...|+.+... +++.+|.|++
T Consensus 79 ~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~-------~g~~~G~~~~ 125 (125)
T cd04051 79 SLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRP-------SGKPQGVLNF 125 (125)
T ss_pred CCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECC-------CCCcCeEEeC
Confidence 8899999999999999987654 3567776431 4778888874
No 97
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.71 E-value=2e-16 Score=136.29 Aligned_cols=110 Identities=27% Similarity=0.480 Sum_probs=95.0
Q ss_pred EEEEEEeeeecCCCC---CCCCCEEEEEEcCeeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCCCC
Q 009539 413 LLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP 489 (532)
Q Consensus 413 ~L~v~i~~a~~L~~~---~~~dpyv~v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~~ 489 (532)
+|+|+|++|++|+.. +.+||||++++++...+|++++++.||.|||+|.|.+... ....|.|+|||++. ++.
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~~l~~~v~d~~~----~~~ 75 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEG-ADSPLSVEVWDWDL----VSK 75 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCC-CCCEEEEEEEECCC----CCC
Confidence 488999999999763 5789999999999889999999999999999999999875 35689999999975 567
Q ss_pred CceeEEEEEechhhhccceeceEEEeCCC---------CCeEEEEEE
Q 009539 490 KETLGYIDINLSDVVSNKRINEKYHLIDS---------KNGRIQIEL 527 (532)
Q Consensus 490 d~~lG~~~i~L~~l~~~~~~~~~~~L~~~---------~~G~i~l~~ 527 (532)
+++||++.++|+++........||.|... ..|.|++.+
T Consensus 76 ~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 76 NDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred CcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 89999999999999876667899999742 248888876
No 98
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.71 E-value=5.7e-17 Score=139.85 Aligned_cols=104 Identities=33% Similarity=0.556 Sum_probs=90.8
Q ss_pred EEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeC-CCCCceeecEEEEEeeCC---CCCEEEEEEEEccC
Q 009539 254 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKH-KNLNPEWNEEYNFTVRDP---ESQAVELAVYDWEQ 329 (532)
Q Consensus 254 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~-~t~nP~Wne~f~f~v~~~---~~~~L~v~v~d~d~ 329 (532)
|.|.|+|++|++|++.+..+.+||||+++++++. ++|++.. ++.||.|||+|.|.+..+ ..+.|.|+|||++.
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~---~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~ 77 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQE---RKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN 77 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEe---eeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc
Confidence 6899999999999999888999999999997643 4777777 489999999999999876 35789999999999
Q ss_pred CCCCCeeEEEEEeCccCCCCCCeEEEEeccc
Q 009539 330 VGKHDKMGMNVVPLKELTPEEPSVKTLDLLK 360 (532)
Q Consensus 330 ~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~ 360 (532)
.++|++||++.+++.++..+.....|+.+.+
T Consensus 78 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p 108 (124)
T cd04049 78 FSDDDFIGEATIHLKGLFEEGVEPGTAELVP 108 (124)
T ss_pred CCCCCeEEEEEEEhHHhhhCCCCcCceEeec
Confidence 8899999999999999988777777877643
No 99
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.71 E-value=3.4e-16 Score=138.12 Aligned_cols=124 Identities=19% Similarity=0.288 Sum_probs=97.4
Q ss_pred EEEEEEEEEcCCCCcCCCCCCCCcEEEEEE--eCCcCCceeeEeeCCCCCceeecEEEEEeeCCC--------CCEEEEE
Q 009539 254 GILHVKVVKAMNLKKKDLLGASDPYVKLKI--TEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE--------SQAVELA 323 (532)
Q Consensus 254 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~--~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~--------~~~L~v~ 323 (532)
|.|.|....+.+|+..+..+.+||||++++ .+......||+++++|+||+|||+|.|.+.... ...|.++
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 444444444444778877789999999997 323445679999999999999999999996431 4579999
Q ss_pred EEEccCC-CCCCeeEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEE
Q 009539 324 VYDWEQV-GKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP 384 (532)
Q Consensus 324 v~d~d~~-~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p 384 (532)
|||++.+ ++|++||++.++|+.+........+++|... .....|+|++.+....
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~-------~k~~Gg~l~v~ir~r~ 138 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDG-------RKATGGKLEVKVRLRE 138 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhC-------CCCcCCEEEEEEEecC
Confidence 9999876 5799999999999999887766778887532 3467889999998764
No 100
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.70 E-value=1.3e-16 Score=137.48 Aligned_cols=113 Identities=22% Similarity=0.390 Sum_probs=95.8
Q ss_pred cEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCC----CCCCCCEEEEEEcC-----eeEE
Q 009539 374 GQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEG----KHHTNPYARILFRG-----EERK 444 (532)
Q Consensus 374 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~----~~~~dpyv~v~~~~-----~~~k 444 (532)
|+|++++.|.+ ..+.|.|+|++|+||+. .+.+||||++++.+ .+.+
T Consensus 1 G~i~~~l~y~~-------------------------~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~k 55 (123)
T cd08521 1 GEIEFSLSYNY-------------------------KTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRK 55 (123)
T ss_pred CeEEEEEEEeC-------------------------CCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceee
Confidence 88999999975 36899999999999975 35799999999842 3469
Q ss_pred EeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEe
Q 009539 445 TKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHL 515 (532)
Q Consensus 445 T~vv~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L 515 (532)
|++++++.||+|||+|.|.+..... ...+.++|||++. ++++++||++.++|+++..+.....||+|
T Consensus 56 T~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~----~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 56 TSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHHDR----FGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred ccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeCCC----CcCCceeeEEEEecccccccCCCccEEEC
Confidence 9999999999999999999875322 3489999999875 56889999999999999777777899987
No 101
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.70 E-value=5.4e-17 Score=136.73 Aligned_cols=101 Identities=29% Similarity=0.448 Sum_probs=87.0
Q ss_pred EEEEEEEcCCCCcCCC-CCCCCcEEEEEEeCCcCCceeeEeeCCCCCcee-ecEEEEEeeCCC--CCEEEEEEEEccCCC
Q 009539 256 LHVKVVKAMNLKKKDL-LGASDPYVKLKITEDKLPSKKTTVKHKNLNPEW-NEEYNFTVRDPE--SQAVELAVYDWEQVG 331 (532)
Q Consensus 256 L~V~v~~A~~L~~~d~-~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~W-ne~f~f~v~~~~--~~~L~v~v~d~d~~~ 331 (532)
|.|+|++|++|+.++. .|.+||||++++++. .+||++++++.||.| ||+|.|.+.... .+.|.|+|||++..+
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~---~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~ 77 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGST---TYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYS 77 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCe---eEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCC
Confidence 6899999999999884 688999999999863 469999999999999 999999987542 478999999999999
Q ss_pred CCCeeEEEEEeCccCCCC---CCeEEEEecc
Q 009539 332 KHDKMGMNVVPLKELTPE---EPSVKTLDLL 359 (532)
Q Consensus 332 ~d~~iG~~~i~l~~l~~~---~~~~~~l~l~ 359 (532)
++++||++.+++.++... .....|++|+
T Consensus 78 ~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~ 108 (110)
T cd08688 78 ANDAIGKVYIDLNPLLLKDSVSQISGWFPIY 108 (110)
T ss_pred CCCceEEEEEeHHHhcccCCccccCCeEEcc
Confidence 999999999999999873 3456677764
No 102
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.70 E-value=3.1e-16 Score=140.53 Aligned_cols=113 Identities=21% Similarity=0.421 Sum_probs=95.6
Q ss_pred ceEEEEEEeeeecCCCC---------------------------------CCCCCEEEEEEcCee-EEEeeecCCCCCcc
Q 009539 411 GGLLVVIVHEAQDVEGK---------------------------------HHTNPYARILFRGEE-RKTKHVKKNRDPRW 456 (532)
Q Consensus 411 ~g~L~v~i~~a~~L~~~---------------------------------~~~dpyv~v~~~~~~-~kT~vv~~t~nP~w 456 (532)
-|.|.|+|++|++|+.. +.+||||++++++.+ .+|++++++.||+|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W 85 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW 85 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence 47888999999988642 347999999999866 49999999999999
Q ss_pred cceEEEEecCCCCCCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCC------CCeEEEEEEEEE
Q 009539 457 EEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDS------KNGRIQIELQWR 530 (532)
Q Consensus 457 ~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~------~~G~i~l~~~w~ 530 (532)
||.|+|.+... .+.|.++|+|++. + ++++||++.++++++..+...++||+|.+. +.|+|+++++|.
T Consensus 86 nE~F~~~~~~~--~~~l~~~V~d~d~----~-~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f~ 158 (158)
T cd04015 86 NESFHIYCAHY--ASHVEFTVKDNDV----V-GAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQFT 158 (158)
T ss_pred ceEEEEEccCC--CCEEEEEEEeCCC----c-CCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence 99999998754 3579999999874 3 468999999999999988888999999753 258999999984
No 103
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.70 E-value=1.5e-16 Score=133.15 Aligned_cols=92 Identities=12% Similarity=0.245 Sum_probs=81.2
Q ss_pred eEEEEEEeeeecCCCC-------CCCCCEEEEEEcCeeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccc
Q 009539 412 GLLVVIVHEAQDVEGK-------HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRI 484 (532)
Q Consensus 412 g~L~v~i~~a~~L~~~-------~~~dpyv~v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~ 484 (532)
|+|.|+|++|++|+.. +.+||||+++++++.+||++++++.||+|||.|.|.+.+......|.++|||++.
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~-- 78 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDK-- 78 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCC--
Confidence 7899999999999863 2489999999998889999999999999999999998765444579999999986
Q ss_pred cCCCCCceeEEEEEechhhhccc
Q 009539 485 GLLHPKETLGYIDINLSDVVSNK 507 (532)
Q Consensus 485 ~~~~~d~~lG~~~i~L~~l~~~~ 507 (532)
++.|++||++.++|++++.+.
T Consensus 79 --~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 79 --FSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred --CCCCcceEEEEEEHHHHHhhC
Confidence 578999999999999998754
No 104
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.70 E-value=1.1e-16 Score=138.83 Aligned_cols=92 Identities=27% Similarity=0.486 Sum_probs=84.4
Q ss_pred CceEEEEEEeeeecCCCC---CCCCCEEEEEEcCeeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccC
Q 009539 410 GGGLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGL 486 (532)
Q Consensus 410 ~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~ 486 (532)
..|.|+|.|.+|.||..+ +++||||.+.+++++.||++++++.||+|||.|+|.+.++ +..+.++|||+|.
T Consensus 4 ~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~--~~~lkv~VyD~D~---- 77 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDP--NTPLKVTVYDKDT---- 77 (168)
T ss_pred cceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCC--CceEEEEEEeCCC----
Confidence 368999999999999763 6899999999999999999999999999999999999986 5689999999997
Q ss_pred CCCCceeEEEEEechhhhccc
Q 009539 487 LHPKETLGYIDINLSDVVSNK 507 (532)
Q Consensus 487 ~~~d~~lG~~~i~L~~l~~~~ 507 (532)
+++|++||.++|+|..+++..
T Consensus 78 fs~dD~mG~A~I~l~p~~~~~ 98 (168)
T KOG1030|consen 78 FSSDDFMGEATIPLKPLLEAQ 98 (168)
T ss_pred CCcccccceeeeccHHHHHHh
Confidence 799999999999999988743
No 105
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.70 E-value=2.1e-16 Score=136.64 Aligned_cols=116 Identities=20% Similarity=0.328 Sum_probs=94.1
Q ss_pred cccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCC---C-CCCCCEEEEEEcC---eeEE
Q 009539 372 SRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEG---K-HHTNPYARILFRG---EERK 444 (532)
Q Consensus 372 ~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~---~-~~~dpyv~v~~~~---~~~k 444 (532)
..|+|.+++.|.+. .+.|+|+|++|+||+. . +.+||||++++.. ++.|
T Consensus 1 ~~G~l~~~l~y~~~-------------------------~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~k 55 (128)
T cd08388 1 KLGTLFFSLRYNSE-------------------------KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVK 55 (128)
T ss_pred CCeEEEEEEEEECC-------------------------CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceee
Confidence 37999999999863 6799999999999986 2 6789999999853 3569
Q ss_pred EeeecCCCCCcccceEEEE-ecCCC-CCCeEEEEEEEccccccCCCCCceeEEEEEechhhhcc--ceeceEEEeC
Q 009539 445 TKHVKKNRDPRWEEEFQFM-LEEPP-TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSN--KRINEKYHLI 516 (532)
Q Consensus 445 T~vv~~t~nP~w~e~f~f~-v~~~~-~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~--~~~~~~~~L~ 516 (532)
|++++++.||+|||+|.|. +.... ....|.++|||++. ++++++||++.++|+++... ++...|.+|.
T Consensus 56 T~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~----~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 56 TRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDR----YSRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred ccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCC----CCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 9999999999999999994 43211 22479999999975 67899999999999998554 5667787764
No 106
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.70 E-value=1.6e-16 Score=140.29 Aligned_cols=107 Identities=21% Similarity=0.346 Sum_probs=91.4
Q ss_pred EEEEEEeeeecCCCC-----------------CCCCCEEEEEEcCeeEEEeeecCCCCCcccceEEEEecCCCCCCeEEE
Q 009539 413 LLVVIVHEAQDVEGK-----------------HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHV 475 (532)
Q Consensus 413 ~L~v~i~~a~~L~~~-----------------~~~dpyv~v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v 475 (532)
.+.|+|++|++|+.. +.+||||+|.+++++.||++++++.||+|||+|.|.+..++..+.+.+
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~ 80 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI 80 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence 378999999999863 258999999999999999999999999999999999876545678999
Q ss_pred EEEEccccccCCCCCceeEEEEEechhhhccce-------eceEEEeCCCCCeEE
Q 009539 476 EVCSVSSRIGLLHPKETLGYIDINLSDVVSNKR-------INEKYHLIDSKNGRI 523 (532)
Q Consensus 476 ~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~-------~~~~~~L~~~~~G~i 523 (532)
+|||++. +++|++||++.++|.++...+. ..+|+.|.+++.+..
T Consensus 81 ~v~D~d~----~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~~~~~ 131 (151)
T cd04018 81 QIRDWDR----VGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSPREYS 131 (151)
T ss_pred EEEECCC----CCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCccccc
Confidence 9999986 5689999999999999987542 358999988765543
No 107
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.70 E-value=1.4e-16 Score=137.02 Aligned_cols=114 Identities=25% Similarity=0.302 Sum_probs=96.1
Q ss_pred ccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEEcC---eeEEEe
Q 009539 373 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG---EERKTK 446 (532)
Q Consensus 373 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~---~~~kT~ 446 (532)
.|+|++++.|.+. .+.|.|+|++|+||+.. +.+||||++.+.. +++||+
T Consensus 2 ~G~l~~sl~Y~~~-------------------------~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTk 56 (124)
T cd08389 2 CGDLDVAFEYDPS-------------------------ARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTK 56 (124)
T ss_pred CEEEEEEEEECCC-------------------------CCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecc
Confidence 6999999999864 67899999999999863 6789999988733 356999
Q ss_pred eecCCCCCcccceEEEE-ecCCC-CCCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeC
Q 009539 447 HVKKNRDPRWEEEFQFM-LEEPP-TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLI 516 (532)
Q Consensus 447 vv~~t~nP~w~e~f~f~-v~~~~-~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~ 516 (532)
++++ .||+|||+|.|. +.... .+..|.++|||++. ++++++||++.++|+++...+....||+|+
T Consensus 57 v~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~----~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 57 VQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVER----MRKERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred cccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCC----cccCceEEEEEEeccccCCCCCceEEEeCC
Confidence 9888 999999999998 54321 23479999999985 678999999999999997777788999985
No 108
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.70 E-value=2.8e-16 Score=135.79 Aligned_cols=115 Identities=18% Similarity=0.269 Sum_probs=97.1
Q ss_pred ccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCC---CCCCCCEEEEEEc---CeeEEEe
Q 009539 373 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEG---KHHTNPYARILFR---GEERKTK 446 (532)
Q Consensus 373 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~---~~~~dpyv~v~~~---~~~~kT~ 446 (532)
.|+|++++.|.+. .+.|.|+|++|+||+. .+.+||||++++. +...+|+
T Consensus 2 ~G~l~~~l~y~~~-------------------------~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~ 56 (125)
T cd08386 2 LGRIQFSVSYDFQ-------------------------ESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETK 56 (125)
T ss_pred ccEEEEEEEECCC-------------------------CCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeee
Confidence 6999999999753 6789999999999976 3679999999993 4567999
Q ss_pred eecCCCCCcccceEEEEecCC--CCCCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeC
Q 009539 447 HVKKNRDPRWEEEFQFMLEEP--PTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLI 516 (532)
Q Consensus 447 vv~~t~nP~w~e~f~f~v~~~--~~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~ 516 (532)
+++++.||.|||.|.|.+... .....|.++|||++. ++.+++||++.++++++........||.|.
T Consensus 57 v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~----~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 57 VKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDR----FSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred eecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCC----CcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 999999999999999975321 123479999999985 567899999999999998777788999985
No 109
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.70 E-value=2.2e-17 Score=143.60 Aligned_cols=110 Identities=28% Similarity=0.382 Sum_probs=90.5
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCC--CCCCCcEEEEEEeCC--cCCceeeEeeCCCCCceeecEEEEEeeCC--CCCEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDL--LGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVEL 322 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~--~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v 322 (532)
|....+.|.|+|++|+||+..|. .+.+||||++++.++ +..++||++++++.||+|||+|.|.+... ....|.|
T Consensus 10 Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~ 89 (138)
T cd08407 10 YLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVEL 89 (138)
T ss_pred EeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEE
Confidence 44567889999999999999883 355899999999874 34467999999999999999999998653 3578999
Q ss_pred EEEEccCCCCCCeeEEEEEeCccCCCCCCeEEEEeccc
Q 009539 323 AVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLK 360 (532)
Q Consensus 323 ~v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~ 360 (532)
+|||+|..+++++||++.+++.. .++..++|.+++.
T Consensus 90 ~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml~ 125 (138)
T cd08407 90 EVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEMLD 125 (138)
T ss_pred EEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHHHh
Confidence 99999999999999999999975 3445556666543
No 110
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.70 E-value=4.8e-17 Score=141.62 Aligned_cols=110 Identities=27% Similarity=0.331 Sum_probs=90.1
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCc--CCceeeEeeCCCCCceeecEEEEEeeC--CCCCEEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRD--PESQAVELAV 324 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~v 324 (532)
|....+.|.|+|++|+||+..+..|.+||||++++.+.. ..++||++++++.||+|||+|.|.+.. .....|+|+|
T Consensus 10 Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V 89 (136)
T cd08406 10 YLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTV 89 (136)
T ss_pred EcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEE
Confidence 445667899999999999999988999999999996543 335689999999999999999999864 3467899999
Q ss_pred EEccCCCCCCeeEEEEEeCccCCCCCCeEEEEeccc
Q 009539 325 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLK 360 (532)
Q Consensus 325 ~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~ 360 (532)
||+|..+++++||++.++.... +...+.|.++..
T Consensus 90 ~~~d~~~~~~~iG~v~lg~~~~--g~~~~hW~~ml~ 123 (136)
T cd08406 90 AESTEDGKTPNVGHVIIGPAAS--GMGLSHWNQMLA 123 (136)
T ss_pred EeCCCCCCCCeeEEEEECCCCC--ChhHHHHHHHHH
Confidence 9999999999999999977643 344455555543
No 111
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.70 E-value=2.8e-16 Score=135.90 Aligned_cols=115 Identities=29% Similarity=0.503 Sum_probs=94.6
Q ss_pred EEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCC----
Q 009539 255 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQV---- 330 (532)
Q Consensus 255 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~---- 330 (532)
.|+|+|++|++|+..|..|.+||||++++++.. .+|++++++.||.|||+|.|.+..+ ...|.|+|||+|..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~---~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~ 77 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTK---KRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSR 77 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEe---eecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCcccc
Confidence 589999999999999988999999999997543 5899999999999999999998654 57899999999852
Q ss_pred -------CCCCeeEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEE
Q 009539 331 -------GKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEF 380 (532)
Q Consensus 331 -------~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l 380 (532)
+.+++||++.+++.++... ...|+.|.+.. .....+|+|++++
T Consensus 78 ~~~~~~~~~~~~iG~~~i~l~~~~~~--~~~w~~L~~~~-----~~~~~~G~i~~~~ 127 (127)
T cd04027 78 LKQKFTRESDDFLGQTIIEVRTLSGE--MDVWYNLEKRT-----DKSAVSGAIRLHI 127 (127)
T ss_pred cceeccccCCCcceEEEEEhHHccCC--CCeEEECccCC-----CCCcEeEEEEEEC
Confidence 4699999999999988643 45677774421 2356799998864
No 112
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.70 E-value=1.1e-16 Score=136.75 Aligned_cols=103 Identities=28% Similarity=0.478 Sum_probs=90.7
Q ss_pred EEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCC
Q 009539 254 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKH 333 (532)
Q Consensus 254 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d 333 (532)
|+|+|+|++|++|+..+..|.+||||++++++.. .++|++++++.||+|||+|.|.+... .+.|.|+|||++..++|
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~--~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~~~d 77 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIV--KGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKVGKD 77 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEE--eeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCCCCC
Confidence 6899999999999999988999999999997542 35899999999999999999998765 57999999999999999
Q ss_pred CeeEEEEEeCccCCCCCCeEEEEeccc
Q 009539 334 DKMGMNVVPLKELTPEEPSVKTLDLLK 360 (532)
Q Consensus 334 ~~iG~~~i~l~~l~~~~~~~~~l~l~~ 360 (532)
++||++.+++.++..+ ..+.|+.++.
T Consensus 78 ~~IG~~~~~l~~l~~~-~~~~~~~~~~ 103 (120)
T cd04045 78 RSLGSVEINVSDLIKK-NEDGKYVEYD 103 (120)
T ss_pred CeeeEEEEeHHHhhCC-CCCceEEecC
Confidence 9999999999999887 5566776654
No 113
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.70 E-value=1.3e-16 Score=143.42 Aligned_cols=109 Identities=29% Similarity=0.392 Sum_probs=92.8
Q ss_pred CCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCC--cCCceeeEeeCCCCCceeecEEEEEeeC---CCCCEEEEEE
Q 009539 250 RRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVRD---PESQAVELAV 324 (532)
Q Consensus 250 ~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~---~~~~~L~v~v 324 (532)
....|.|.|+|++|+||+..+..|.+||||++++.+. ....++|++++++.||+|||+|.|.+.. .....|.|+|
T Consensus 23 ~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V 102 (162)
T cd04020 23 KPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTV 102 (162)
T ss_pred CCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEE
Confidence 3468999999999999999998899999999998643 2345799999999999999999998532 2346899999
Q ss_pred EEccCCCCCCeeEEEEEeCccCCCCCCeEEEEec
Q 009539 325 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 358 (532)
Q Consensus 325 ~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l 358 (532)
||++..++|++||++.+++.++........|+.+
T Consensus 103 ~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~ 136 (162)
T cd04020 103 WDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDS 136 (162)
T ss_pred EeCCCCCCCceEEEEEEeCCccccCCCccccccC
Confidence 9999999999999999999999876666777665
No 114
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.69 E-value=4.8e-17 Score=141.63 Aligned_cols=117 Identities=18% Similarity=0.313 Sum_probs=94.7
Q ss_pred ccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCC---CCCCCCEEEEEEcCe-----eEE
Q 009539 373 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEG---KHHTNPYARILFRGE-----ERK 444 (532)
Q Consensus 373 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~---~~~~dpyv~v~~~~~-----~~k 444 (532)
-|+|.++++|.|. .+.|.|+|++|+||+. .+.+||||++++... ++|
T Consensus 1 ~G~i~~sL~Y~~~-------------------------~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~k 55 (136)
T cd08406 1 VGEILLSLSYLPT-------------------------AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKK 55 (136)
T ss_pred CcEEEEEEEEcCC-------------------------CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccC
Confidence 3899999999874 6789999999999986 367999999999432 458
Q ss_pred EeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCCCC
Q 009539 445 TKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKN 520 (532)
Q Consensus 445 T~vv~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~ 520 (532)
|++++++.||+|||+|.|.+..... +..|.|+|||++. ++++++||++.+.... .++...+|..+..+++
T Consensus 56 T~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~----~~~~~~iG~v~lg~~~--~g~~~~hW~~ml~~~~ 126 (136)
T cd08406 56 TSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTE----DGKTPNVGHVIIGPAA--SGMGLSHWNQMLASLR 126 (136)
T ss_pred CccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCCC----CCCCCeeEEEEECCCC--CChhHHHHHHHHHCCC
Confidence 9999999999999999999875422 3479999999985 5789999999998764 3445567777765543
No 115
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.69 E-value=1.1e-16 Score=137.85 Aligned_cols=121 Identities=26% Similarity=0.416 Sum_probs=96.0
Q ss_pred EEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCCC
Q 009539 255 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHD 334 (532)
Q Consensus 255 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~ 334 (532)
+|+|+|++|++|+..|..|.+||||++++++... ..+|++++++.||+|||+|.|.+..+..+.|.|+|||++..++|+
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~-~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd 79 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKI-NDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDD 79 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeec-cceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCc
Confidence 4799999999999999989999999999987653 357888889999999999999987766789999999999999999
Q ss_pred eeEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEEc
Q 009539 335 KMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPF 385 (532)
Q Consensus 335 ~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~ 385 (532)
+||++.+++++..-. .++.+.-+- ......|.++.+..+.|.
T Consensus 80 ~iG~~~i~l~~~~~~-~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 121 (124)
T cd04037 80 LIGETVIDLEDRFFS-KHRATCGLP--------PTYEESGPNQWRDSLKPS 121 (124)
T ss_pred eeEEEEEeecccccc-hHHHhccCC--------CcccccCceecCcccCcc
Confidence 999999999977642 222222111 123467777777666553
No 116
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.69 E-value=9.2e-17 Score=137.62 Aligned_cols=120 Identities=17% Similarity=0.257 Sum_probs=93.8
Q ss_pred cEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEEcC-----eeEEE
Q 009539 374 GQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----EERKT 445 (532)
Q Consensus 374 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~-----~~~kT 445 (532)
.+|.++++|.|. +|.|+|.|++|+||+.. +.+||||+|++.. +++||
T Consensus 1 ~el~~sL~Y~p~-------------------------~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT 55 (135)
T cd08692 1 AELQLGTCFQAV-------------------------NSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKT 55 (135)
T ss_pred CeEEEEeeecCc-------------------------CCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecC
Confidence 378999999985 78999999999999874 4569999998843 35699
Q ss_pred eeecCCC-CCcccceEEEEecCCCCCCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCCCCeEE
Q 009539 446 KHVKKNR-DPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRI 523 (532)
Q Consensus 446 ~vv~~t~-nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i 523 (532)
+++++|. ||+|||+|.|.+.....+-.+.|+|||+++ ++++++||++.++.+.. .....++|.+...+++-.|
T Consensus 56 ~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~~~----~~~n~~IG~v~lG~~~~-~~~~~~hW~~m~~~pr~~i 129 (135)
T cd08692 56 RLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSRSS----VRRKHFLGQVWISSDSS-SSEAVEQWKDTIANPEKVV 129 (135)
T ss_pred ccEECCCCCceecceEEEeCCchhheeEEEEEEEeCCC----CcCCceEEEEEECCccC-CchhhhhHHHHHhCCCCee
Confidence 9999995 699999999999865332378889999875 57899999999999763 2233567777655544333
No 117
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.69 E-value=6.1e-16 Score=132.42 Aligned_cols=110 Identities=25% Similarity=0.417 Sum_probs=95.2
Q ss_pred eEEEEEEeeeecCCCC---CCCCCEEEEEEcCeeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCCC
Q 009539 412 GLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLH 488 (532)
Q Consensus 412 g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~ 488 (532)
|.|.|+|++|+||+.. +.+||||++++++...+|++++++.||.|||+|.|.+.+. .+.+.++|||++. .+
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~--~~~l~~~v~d~~~----~~ 74 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDI--HDVLEVTVYDEDK----DK 74 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCc--CCEEEEEEEECCC----CC
Confidence 6899999999999863 5789999999999889999999999999999999998752 4689999999975 46
Q ss_pred CCceeEEEEEechhhhccceeceEEEeCCC-----CCeEEEEEEEE
Q 009539 489 PKETLGYIDINLSDVVSNKRINEKYHLIDS-----KNGRIQIELQW 529 (532)
Q Consensus 489 ~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~-----~~G~i~l~~~w 529 (532)
.+++||++.+++.++..+. .+||+|.+. ..|+|.+++++
T Consensus 75 ~~~~iG~~~~~l~~~~~~~--~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 75 KPEFLGKVAIPLLSIKNGE--RKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred CCceeeEEEEEHHHCCCCC--ceEEECcccCCCCceeeEEEEEEEe
Confidence 7899999999999986543 689999653 37999999876
No 118
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.69 E-value=8.5e-17 Score=140.56 Aligned_cols=110 Identities=33% Similarity=0.477 Sum_probs=92.0
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCc--CCceeeEeeCCCCCceeecEEEEEeeCC--CCCEEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAV 324 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v 324 (532)
|....|.|.|+|++|++|+..+..|.+||||++++.+.. ...++|++++++.||+|||+|.|.+... ....|.|+|
T Consensus 8 y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V 87 (133)
T cd08384 8 YNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITV 87 (133)
T ss_pred EcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEE
Confidence 455678999999999999999988999999999997532 3356999999999999999999998643 356899999
Q ss_pred EEccCCCCCCeeEEEEEeCccCCCCCCeEEEEeccc
Q 009539 325 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLK 360 (532)
Q Consensus 325 ~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~ 360 (532)
||++..+++++||++.+++.. .++....|+++++
T Consensus 88 ~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~ 121 (133)
T cd08384 88 WDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLK 121 (133)
T ss_pred EeCCCCCCccEEEEEEEecCC--CCchHHHHHHHHh
Confidence 999988899999999999986 3334556766644
No 119
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.69 E-value=1.5e-16 Score=140.22 Aligned_cols=101 Identities=26% Similarity=0.316 Sum_probs=84.7
Q ss_pred EEEEEEeeeecCCC-CCCCCCEEEEEEcC-----eeEEEeeecCCCCCcccceEEEEecC-----------C--C-CCCe
Q 009539 413 LLVVIVHEAQDVEG-KHHTNPYARILFRG-----EERKTKHVKKNRDPRWEEEFQFMLEE-----------P--P-TNDR 472 (532)
Q Consensus 413 ~L~v~i~~a~~L~~-~~~~dpyv~v~~~~-----~~~kT~vv~~t~nP~w~e~f~f~v~~-----------~--~-~~~~ 472 (532)
.|.|+|++|+||+. .|.+||||++++.+ .+++|++++++.||+|||.|+|.+.. + . ....
T Consensus 1 kL~V~Vi~ArnL~~~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~ 80 (148)
T cd04010 1 KLSVRVIECSDLALKNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLE 80 (148)
T ss_pred CEEEEEEeCcCCCCCCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEE
Confidence 37899999999987 36899999999976 45699999999999999999999951 1 1 1237
Q ss_pred EEEEEEEccccccCCCCCceeEEEEEechhhhcc-ceeceEEEeCC
Q 009539 473 LHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSN-KRINEKYHLID 517 (532)
Q Consensus 473 l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~-~~~~~~~~L~~ 517 (532)
+.|+|||++. ++.|++||++.|+|+++... .....||+|..
T Consensus 81 L~i~V~d~~~----~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~ 122 (148)
T cd04010 81 LRVDLWHASM----GGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQP 122 (148)
T ss_pred EEEEEEcCCC----CCCCceeEEEEEecccccccCCcCcceeecCC
Confidence 8999999975 56899999999999999876 56789999964
No 120
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.68 E-value=4.9e-16 Score=135.34 Aligned_cols=119 Identities=25% Similarity=0.495 Sum_probs=101.7
Q ss_pred ccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCC---CCCCCCEEEEEEcC-----eeEE
Q 009539 373 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEG---KHHTNPYARILFRG-----EERK 444 (532)
Q Consensus 373 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~---~~~~dpyv~v~~~~-----~~~k 444 (532)
+|+|++++.|. .+.|+|+|++|+||+. .+.+||||++.+.+ ...+
T Consensus 1 ~g~~~~~~~~~---------------------------~~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~r 53 (131)
T cd04026 1 RGRIYLKISVK---------------------------DNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQK 53 (131)
T ss_pred CcEEEEEEEEC---------------------------CCEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceec
Confidence 58999999885 3789999999999986 35799999999963 4579
Q ss_pred EeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCCCCeEE
Q 009539 445 TKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRI 523 (532)
Q Consensus 445 T~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i 523 (532)
|++++++.||.|||+|.|.+........+.++|||++. ++.+++||++.++|+++... ....||+|.+...|+.
T Consensus 54 T~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~----~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~~~~~~ 127 (131)
T cd04026 54 TKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDR----TTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQEEGEY 127 (131)
T ss_pred ceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCC----CCCcceeEEEEEeHHHhCcC-ccCceEECcCcccccc
Confidence 99999999999999999998764334589999999875 56789999999999999865 6688999998888864
No 121
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.68 E-value=2.6e-16 Score=132.59 Aligned_cols=100 Identities=24% Similarity=0.435 Sum_probs=87.0
Q ss_pred EEEEEeeeecCCCC----CCCCCEEEEEEcCeeEEEeeecCCCCCcc-cceEEEEecCCCC-CCeEEEEEEEccccccCC
Q 009539 414 LVVIVHEAQDVEGK----HHTNPYARILFRGEERKTKHVKKNRDPRW-EEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLL 487 (532)
Q Consensus 414 L~v~i~~a~~L~~~----~~~dpyv~v~~~~~~~kT~vv~~t~nP~w-~e~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~ 487 (532)
|.|+|++|++|+.. +.+||||+++++++.+||++++++.||.| ||.|.|.+..... .+.|.|+|||++. +
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~----~ 76 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDT----Y 76 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCC----C
Confidence 57999999999752 56899999999998899999999999999 9999999976422 3589999999985 5
Q ss_pred CCCceeEEEEEechhhhcc---ceeceEEEeCC
Q 009539 488 HPKETLGYIDINLSDVVSN---KRINEKYHLID 517 (532)
Q Consensus 488 ~~d~~lG~~~i~L~~l~~~---~~~~~~~~L~~ 517 (532)
+++++||++.+++.++... ...+.||+|.+
T Consensus 77 ~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 77 SANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred CCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 7889999999999999883 45889999976
No 122
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.68 E-value=2e-16 Score=139.64 Aligned_cols=93 Identities=30% Similarity=0.577 Sum_probs=81.5
Q ss_pred EEEEEEEEcCCCCcCCCCC--------------CCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCC-CCE
Q 009539 255 ILHVKVVKAMNLKKKDLLG--------------ASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE-SQA 319 (532)
Q Consensus 255 ~L~V~v~~A~~L~~~d~~g--------------~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~-~~~ 319 (532)
.|.|+|++|++|+.+|..+ .+||||++.+++.+. +|++++++.||+|||+|.|.+..+. .+.
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~---kT~v~~~t~nPvWNE~f~f~v~~p~~~~~ 77 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKV---KTSVKKNSYNPEWNEQIVFPEMFPPLCER 77 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEee---ecceEcCCCCCCcceEEEEEeeCCCcCCE
Confidence 3789999999999988543 689999999987653 8999999999999999999976443 579
Q ss_pred EEEEEEEccCCCCCCeeEEEEEeCccCCCCC
Q 009539 320 VELAVYDWEQVGKHDKMGMNVVPLKELTPEE 350 (532)
Q Consensus 320 L~v~v~d~d~~~~d~~iG~~~i~l~~l~~~~ 350 (532)
|.|+|||+|..++|++||++.+++.++....
T Consensus 78 l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~ 108 (151)
T cd04018 78 IKIQIRDWDRVGNDDVIGTHFIDLSKISNSG 108 (151)
T ss_pred EEEEEEECCCCCCCCEEEEEEEeHHHhccCC
Confidence 9999999999999999999999999987653
No 123
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.68 E-value=2.7e-16 Score=137.25 Aligned_cols=101 Identities=33% Similarity=0.549 Sum_probs=87.5
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCc----CCceeeEeeCCCCCceeecEEEEEeeCC----CCCEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK----LPSKKTTVKHKNLNPEWNEEYNFTVRDP----ESQAV 320 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~----~~~~~T~v~~~t~nP~Wne~f~f~v~~~----~~~~L 320 (532)
+....+.|+|+|++|++|+..+..|.+||||++++.+.. ...++|+++++|.||+|||+|.|.+... ....|
T Consensus 11 y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l 90 (133)
T cd04009 11 YRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALL 90 (133)
T ss_pred EcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEE
Confidence 344567899999999999999888999999999997543 2457999999999999999999998653 25689
Q ss_pred EEEEEEccCCCCCCeeEEEEEeCccCCCC
Q 009539 321 ELAVYDWEQVGKHDKMGMNVVPLKELTPE 349 (532)
Q Consensus 321 ~v~v~d~d~~~~d~~iG~~~i~l~~l~~~ 349 (532)
.|+|||++..+++++||++.++|+++...
T Consensus 91 ~~~V~d~d~~~~d~~iG~~~i~l~~l~~~ 119 (133)
T cd04009 91 LFTVKDYDLLGSNDFEGEAFLPLNDIPGV 119 (133)
T ss_pred EEEEEecCCCCCCcEeEEEEEeHHHCCcc
Confidence 99999999999999999999999999854
No 124
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.68 E-value=2.8e-16 Score=132.66 Aligned_cols=100 Identities=20% Similarity=0.294 Sum_probs=82.8
Q ss_pred EEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCC
Q 009539 254 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKH 333 (532)
Q Consensus 254 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d 333 (532)
+.|.|+|++|++|+..+ ..||||++.+++++ .+|++.++ .||+|||+|.|.+.+. ...|.|+|||+|.. .|
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k---~kT~v~~~-~nP~WnE~F~F~~~~~-~~~L~v~V~dkd~~-~D 72 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVK---STTIAVRG-SQPCWEQDFMFEINRL-DLGLVIELWNKGLI-WD 72 (127)
T ss_pred ceEEEEEEEeeCCCCCC---CCCCeEEEEECCEE---eEeeECCC-CCCceeeEEEEEEcCC-CCEEEEEEEeCCCc-CC
Confidence 68999999999997654 45999999998754 48888877 5999999999999775 45599999999855 89
Q ss_pred CeeEEEEEeCccCCCCCCe--EEEEeccccc
Q 009539 334 DKMGMNVVPLKELTPEEPS--VKTLDLLKNM 362 (532)
Q Consensus 334 ~~iG~~~i~l~~l~~~~~~--~~~l~l~~~~ 362 (532)
|+||++.++|.++..+... ..|++|.+..
T Consensus 73 D~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~~ 103 (127)
T cd08394 73 TLVGTVWIPLSTIRQSNEEGPGEWLTLDSEV 103 (127)
T ss_pred CceEEEEEEhHHcccCCCCCCCccEecChHH
Confidence 9999999999999866444 6788775543
No 125
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.68 E-value=2.3e-16 Score=138.66 Aligned_cols=92 Identities=41% Similarity=0.694 Sum_probs=84.6
Q ss_pred EEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCC
Q 009539 254 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKH 333 (532)
Q Consensus 254 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d 333 (532)
|.|+|+|++|++|+..+. +.+||||+++++++. .+|++++++.||+|||+|.|.+.++ ...+.++|||++.+++|
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~---~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~d 76 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQK---VKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSKD 76 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEE---EEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCCCC
Confidence 899999999999999887 899999999998654 5999999999999999999999876 68999999999999999
Q ss_pred CeeEEEEEeCccCCCCC
Q 009539 334 DKMGMNVVPLKELTPEE 350 (532)
Q Consensus 334 ~~iG~~~i~l~~l~~~~ 350 (532)
++||++.+++.++....
T Consensus 77 d~iG~a~i~l~~l~~~~ 93 (145)
T cd04038 77 DSMGEAEIDLEPLVEAA 93 (145)
T ss_pred CEEEEEEEEHHHhhhhh
Confidence 99999999999988653
No 126
>PLN03008 Phospholipase D delta
Probab=99.68 E-value=4e-16 Score=166.58 Aligned_cols=128 Identities=24% Similarity=0.469 Sum_probs=108.8
Q ss_pred eEEEEEEEEEcCCCCcCCC------------------------------------------CCCCCcEEEEEEeCCcCCc
Q 009539 253 VGILHVKVVKAMNLKKKDL------------------------------------------LGASDPYVKLKITEDKLPS 290 (532)
Q Consensus 253 ~g~L~V~v~~A~~L~~~d~------------------------------------------~g~~dpyv~v~~~~~~~~~ 290 (532)
-|.|.++|.+|++|+++|. .+++||||++.+++++ .
T Consensus 13 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~r--v 90 (868)
T PLN03008 13 HGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQAT--L 90 (868)
T ss_pred ecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcc--e
Confidence 5888999999999886331 2467999999997654 3
Q ss_pred eeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCCCeeEEEEEeCccCCCCCCeEEEEecccccccCCCCCC
Q 009539 291 KKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNE 370 (532)
Q Consensus 291 ~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~ 370 (532)
.||++++++.||+|||+|.|.+.++ ...|.|+|||+|.++ +++||++.+|++++..+...+.|+++..... +..
T Consensus 91 ~RTrVi~n~~NPvWNE~F~f~vah~-~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~----kp~ 164 (868)
T PLN03008 91 ARTRVLKNSQEPLWDEKFNISIAHP-FAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGWFPVLGASG----KPP 164 (868)
T ss_pred eeEEeCCCCCCCCcceeEEEEecCC-CceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEEEEccccCC----CCC
Confidence 5999999999999999999999886 468999999999987 6899999999999999999999999976432 345
Q ss_pred ccccEEEEEEEEEEccCC
Q 009539 371 KSRGQLVVEFIYKPFKEE 388 (532)
Q Consensus 371 ~~~G~l~l~l~~~p~~~~ 388 (532)
+..|+|+++++|.|...+
T Consensus 165 k~~~kl~v~lqf~pv~~~ 182 (868)
T PLN03008 165 KAETAIFIDMKFTPFDQI 182 (868)
T ss_pred CCCcEEEEEEEEEEcccc
Confidence 677899999999999765
No 127
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.67 E-value=1.7e-16 Score=138.98 Aligned_cols=122 Identities=19% Similarity=0.312 Sum_probs=99.0
Q ss_pred ccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC--CCCCCEEEEEEcC-----eeEEE
Q 009539 373 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK--HHTNPYARILFRG-----EERKT 445 (532)
Q Consensus 373 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~--~~~dpyv~v~~~~-----~~~kT 445 (532)
.|+|++++.|.|. .+.|.|+|++|+||+.. +.+||||++++.. +++||
T Consensus 1 ~G~i~~sl~y~~~-------------------------~~~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~~~~~~kT 55 (137)
T cd08409 1 LGDIQISLTYNPT-------------------------LNRLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNKVVKTKKT 55 (137)
T ss_pred CcEEEEEEEECCC-------------------------CCeEEEEEEEecCCCcccCCCCCeEEEEEEEECCEEeeeeec
Confidence 4899999999874 67899999999999753 5799999999854 25699
Q ss_pred eeecCCCCCcccceEEEEecCCCCC-CeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCCCCeEE
Q 009539 446 KHVKKNRDPRWEEEFQFMLEEPPTN-DRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRI 523 (532)
Q Consensus 446 ~vv~~t~nP~w~e~f~f~v~~~~~~-~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i 523 (532)
++++++.||+|||.|.|.+...+.. ..|.++|||.+. ++++++||++.++......++...+|+++...++..|
T Consensus 56 ~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~----~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~p~~~i 130 (137)
T cd08409 56 EVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGG----VRKSKLLGRVVLGPFMYARGKELEHWNDMLSKPKELI 130 (137)
T ss_pred ccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCC----CCCcceEEEEEECCcccCCChHHHHHHHHHhCCCCce
Confidence 9999999999999999999753333 489999999985 5689999999999765555556678888776554443
No 128
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.67 E-value=6.1e-16 Score=133.25 Aligned_cols=114 Identities=19% Similarity=0.270 Sum_probs=96.7
Q ss_pred cEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC----CCCCCEEEEEEc---CeeEEEe
Q 009539 374 GQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK----HHTNPYARILFR---GEERKTK 446 (532)
Q Consensus 374 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~----~~~dpyv~v~~~---~~~~kT~ 446 (532)
|+|.+++.|.+. .+.|.|+|++|+||+.. +.+||||++++. .+..+|+
T Consensus 1 G~l~~~l~y~~~-------------------------~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~ 55 (123)
T cd08390 1 GRLWFSVQYDLE-------------------------EEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSK 55 (123)
T ss_pred CEEEEEEEECCC-------------------------CCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEee
Confidence 889999999863 67899999999999753 478999999984 3456999
Q ss_pred eecCCCCCcccceEEEEecCCCC-CCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeC
Q 009539 447 HVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLI 516 (532)
Q Consensus 447 vv~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~ 516 (532)
+++++.||+|||.|.|.+..... ...|.|+|||++. ++.+++||++.++|+++........|++|.
T Consensus 56 v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~----~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 56 VKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDR----FSRHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred eEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCc----CCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence 99999999999999999865322 2479999999875 567899999999999998877778999985
No 129
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.67 E-value=9.8e-17 Score=140.68 Aligned_cols=109 Identities=29% Similarity=0.447 Sum_probs=90.1
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeC--CcCCceeeEeeCCCCCceeecEEEEEeeC--CCCCEEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITE--DKLPSKKTTVKHKNLNPEWNEEYNFTVRD--PESQAVELAV 324 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~--~~~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~v 324 (532)
+....+.|.|+|++|+||+..+..|.+||||++++.+ .....++|++++++.||+|||+|.|.+.. .....|.|+|
T Consensus 10 y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v 89 (136)
T cd08405 10 YNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITV 89 (136)
T ss_pred EcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEE
Confidence 4556789999999999999999889999999999853 23345689999999999999999999753 2356899999
Q ss_pred EEccCCCCCCeeEEEEEeCccCCCCCCeEEEEecc
Q 009539 325 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL 359 (532)
Q Consensus 325 ~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~ 359 (532)
||++..+++++||++.+++.+. +...+.|.++.
T Consensus 90 ~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~ 122 (136)
T cd08405 90 MDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDML 122 (136)
T ss_pred EECCCCCCCcEeEEEEECCccC--CchHHHHHHHH
Confidence 9999999999999999999986 33445555554
No 130
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.67 E-value=5.4e-16 Score=130.91 Aligned_cols=102 Identities=21% Similarity=0.300 Sum_probs=88.6
Q ss_pred ceEEEEEEeeeecCCCCCCCCCEEEEEEcCeeEEEeeecCCCCCcccceEEEEecCCC---CCCeEEEEEEEccccccCC
Q 009539 411 GGLLVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPP---TNDRLHVEVCSVSSRIGLL 487 (532)
Q Consensus 411 ~g~L~v~i~~a~~L~~~~~~dpyv~v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~~~---~~~~l~v~V~d~~~~~~~~ 487 (532)
...|+|+|++|++|+ .+.+||||++++++++++|++++++.||.|||.|.|.+..+. ....|.++|||++. +
T Consensus 3 ~~~l~V~v~~a~~L~-~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~----~ 77 (111)
T cd04011 3 DFQVRVRVIEARQLV-GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS----L 77 (111)
T ss_pred cEEEEEEEEEcccCC-CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc----c
Confidence 457899999999999 678999999999999999999999999999999999986542 13579999999975 5
Q ss_pred CCCceeEEEEEechhhhcc---ceeceEEEeCC
Q 009539 488 HPKETLGYIDINLSDVVSN---KRINEKYHLID 517 (532)
Q Consensus 488 ~~d~~lG~~~i~L~~l~~~---~~~~~~~~L~~ 517 (532)
+++++||++.++|+++... .-..+||+|.+
T Consensus 78 ~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 78 RSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred ccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 6799999999999999775 34688999975
No 131
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.67 E-value=1.3e-15 Score=130.63 Aligned_cols=109 Identities=21% Similarity=0.381 Sum_probs=92.3
Q ss_pred EEEEEeeeecCCCC---CCCCCEEEEEEcCee-EEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCCCC
Q 009539 414 LVVIVHEAQDVEGK---HHTNPYARILFRGEE-RKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP 489 (532)
Q Consensus 414 L~v~i~~a~~L~~~---~~~dpyv~v~~~~~~-~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~~ 489 (532)
|.|+|++|++|+.. +.+||||+++++++. .||++++++.||.|||.|.|.+... ...+.++|||++. ++.
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~--~~~l~v~v~d~~~----~~~ 75 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPG--FHTVSFYVLDEDT----LSR 75 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCC--CCEEEEEEEECCC----CCC
Confidence 78999999999763 689999999998765 5999999999999999999998653 3689999999985 578
Q ss_pred CceeEEEEEechhhhcc-ceeceEEEeCCCC-----CeEEEEEEE
Q 009539 490 KETLGYIDINLSDVVSN-KRINEKYHLIDSK-----NGRIQIELQ 528 (532)
Q Consensus 490 d~~lG~~~i~L~~l~~~-~~~~~~~~L~~~~-----~G~i~l~~~ 528 (532)
|++||++.++++++... ...+.|++|.+.. .|+|.|+++
T Consensus 76 d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 76 DDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred CCEEEEEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 99999999999988754 3468999996532 699998864
No 132
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.67 E-value=5e-16 Score=135.86 Aligned_cols=107 Identities=24% Similarity=0.377 Sum_probs=91.8
Q ss_pred EEEEEEEcCCCCcCCCCCCCCcEEEEEEeCC-cCCceeeEeeCCCCCceeecEEEEEeeCC---------------CCCE
Q 009539 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITED-KLPSKKTTVKHKNLNPEWNEEYNFTVRDP---------------ESQA 319 (532)
Q Consensus 256 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~-~~~~~~T~v~~~t~nP~Wne~f~f~v~~~---------------~~~~ 319 (532)
|+|+|++|++|+.+ ..|.+||||++++++. ....++|++++++.||.|||+|.|.+... ....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999988 7789999999999842 12346999999999999999999998765 4578
Q ss_pred EEEEEEEccCCCCCCeeEEEEEeCccCCCCCCeEEEEecccccc
Q 009539 320 VELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMD 363 (532)
Q Consensus 320 L~v~v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~ 363 (532)
|.|+|||++..+++++||++.+++.++........|++|.+...
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~~ 123 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPREA 123 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCcCC
Confidence 99999999988899999999999999987777788998866543
No 133
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.67 E-value=1.9e-15 Score=132.00 Aligned_cols=118 Identities=19% Similarity=0.296 Sum_probs=97.3
Q ss_pred ceEEEEEEeeeecCCCCCCCCCEEEEEEcCeeE-EEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCCCC
Q 009539 411 GGLLVVIVHEAQDVEGKHHTNPYARILFRGEER-KTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP 489 (532)
Q Consensus 411 ~g~L~v~i~~a~~L~~~~~~dpyv~v~~~~~~~-kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~~ 489 (532)
..-|.|.|++|++|+.+ .+|||++.+++... ||+++.++.||.|+|.|.|.+... ...+.|.|+..+...+-..+
T Consensus 10 ~~sL~v~V~EAk~Lp~~--~~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~--~~~l~v~v~k~~~~~~~~~~ 85 (146)
T cd04013 10 ENSLKLWIIEAKGLPPK--KRYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPP--VSVITVNLYRESDKKKKKDK 85 (146)
T ss_pred EEEEEEEEEEccCCCCc--CCceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCc--ccEEEEEEEEccCccccccC
Confidence 35689999999999985 48999999999986 999999999999999999976543 35799999866532111125
Q ss_pred CceeEEEEEechhhhccceeceEEEeCCCC-------------CeEEEEEEEEEeC
Q 009539 490 KETLGYIDINLSDVVSNKRINEKYHLIDSK-------------NGRIQIELQWRTA 532 (532)
Q Consensus 490 d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~-------------~G~i~l~~~w~p~ 532 (532)
+++||++.|++.++..++..++||+|.+.. .++|+++++|.++
T Consensus 86 ~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 86 SQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred CcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 789999999999999888899999996431 3799999999874
No 134
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.67 E-value=1.8e-15 Score=131.60 Aligned_cols=118 Identities=25% Similarity=0.412 Sum_probs=93.3
Q ss_pred EEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcC----------CceeeEeeCCCCCcee-ecEEEEEeeCCCCCEEEEE
Q 009539 255 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKL----------PSKKTTVKHKNLNPEW-NEEYNFTVRDPESQAVELA 323 (532)
Q Consensus 255 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~----------~~~~T~v~~~t~nP~W-ne~f~f~v~~~~~~~L~v~ 323 (532)
+..|++++|+||+ ++..|++||||++++.+... ..++|+++++++||+| ||+|.|.+.. .+.|.++
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~--~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP--TDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC--CCEEEEE
Confidence 4679999999998 67789999999999975432 2579999999999999 9999999853 5789999
Q ss_pred EEEccCCCC---CCeeEEEEEeCccCCCCC---CeEEEEecccccccCCCCCCccccEEEEEE
Q 009539 324 VYDWEQVGK---HDKMGMNVVPLKELTPEE---PSVKTLDLLKNMDLNDGQNEKSRGQLVVEF 380 (532)
Q Consensus 324 v~d~d~~~~---d~~iG~~~i~l~~l~~~~---~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l 380 (532)
|||++..++ +++||++.+++.++..+. ....++++.+. . ..+...|+|.+.+
T Consensus 79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~----~-~~s~v~G~~~l~~ 136 (137)
T cd08691 79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRR----T-PTDHVSGQLTFRF 136 (137)
T ss_pred EEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcC----C-CCCcEEEEEEEEe
Confidence 999875443 799999999999998653 24455655332 1 2466788888765
No 135
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.66 E-value=1.1e-15 Score=133.48 Aligned_cols=111 Identities=26% Similarity=0.481 Sum_probs=93.8
Q ss_pred EEEEEEeeeecCCCC---CCCCCEEEEEEcCe-------eEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccc
Q 009539 413 LLVVIVHEAQDVEGK---HHTNPYARILFRGE-------ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSS 482 (532)
Q Consensus 413 ~L~v~i~~a~~L~~~---~~~dpyv~v~~~~~-------~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~ 482 (532)
.|+|+|++|+||+.. +.+||||++++.+. ..+|++++++.||.|||.|.|.+... ...+.++|||++.
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~--~~~l~~~v~d~~~ 78 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR--EHRLLFEVFDENR 78 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC--CCEEEEEEEECCC
Confidence 378999999999864 57999999999765 46999999999999999999998653 4579999999985
Q ss_pred cccCCCCCceeEEEEEechhhhccce------eceEEEeCCC-----CCeEEEEEEEE
Q 009539 483 RIGLLHPKETLGYIDINLSDVVSNKR------INEKYHLIDS-----KNGRIQIELQW 529 (532)
Q Consensus 483 ~~~~~~~d~~lG~~~i~L~~l~~~~~------~~~~~~L~~~-----~~G~i~l~~~w 529 (532)
++.+++||++.++++++..+.. ..+||+|... ..|+|++++.|
T Consensus 79 ----~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~ 132 (133)
T cd04033 79 ----LTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY 132 (133)
T ss_pred ----CCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence 5789999999999999987532 4589999743 36999999987
No 136
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.66 E-value=1.7e-15 Score=132.45 Aligned_cols=116 Identities=18% Similarity=0.252 Sum_probs=93.8
Q ss_pred EEEEEEeeeecCCC---CCCCCCEEEEEEcCeeEEEeeecCCCCCcccceEEEEecCCC--------CCCeEEEEEEEcc
Q 009539 413 LLVVIVHEAQDVEG---KHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPP--------TNDRLHVEVCSVS 481 (532)
Q Consensus 413 ~L~v~i~~a~~L~~---~~~~dpyv~v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~~~--------~~~~l~v~V~d~~ 481 (532)
.|+|+|++|++|+. .+.+||||++++++.+++|++++++.||.|||.|.|.+...+ ....+.++|||++
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d 81 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD 81 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence 58999999999976 368999999999999999999999999999999999754321 1246999999998
Q ss_pred ccccCCCCCceeEEEEE-echhhhc---cceeceEEEeCCC--CCeEEEEEEEEEeC
Q 009539 482 SRIGLLHPKETLGYIDI-NLSDVVS---NKRINEKYHLIDS--KNGRIQIELQWRTA 532 (532)
Q Consensus 482 ~~~~~~~~d~~lG~~~i-~L~~l~~---~~~~~~~~~L~~~--~~G~i~l~~~w~p~ 532 (532)
. .+.|++||++.+ ++..+.. .....+||+|... ..|+|.|++++.|+
T Consensus 82 ~----~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~~~~Geil~~~~~~~~ 134 (135)
T cd04017 82 S----VGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGGQSAGELLAAFELIEV 134 (135)
T ss_pred C----CCCCccceEEEeeeeeecccCCCCCCCceEEEeecCCCchhheeEEeEEEEe
Confidence 6 567899999997 4433332 2456799999754 36999999999874
No 137
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.66 E-value=1.4e-16 Score=139.75 Aligned_cols=108 Identities=34% Similarity=0.481 Sum_probs=89.5
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCc--CCceeeEeeCCCCCceeecEEEEEeeCC--CCCEEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAV 324 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v 324 (532)
+....+.|.|+|++|+||+..|..|.+||||++++.+.. ....+|++++++.||.|||+|.|.+... ....|.|+|
T Consensus 10 y~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v 89 (136)
T cd08404 10 YQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLV 89 (136)
T ss_pred EeCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEE
Confidence 344567899999999999999988999999999996532 2356899999999999999999998642 246799999
Q ss_pred EEccCCCCCCeeEEEEEeCccCCCCCCeEEEEec
Q 009539 325 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 358 (532)
Q Consensus 325 ~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l 358 (532)
||++..+++++||++.+++.. .+.....|.++
T Consensus 90 ~d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l 121 (136)
T cd08404 90 LDSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEV 121 (136)
T ss_pred EECCCCCCCccEEEEEECCcC--CCchHHHHHHH
Confidence 999999999999999999998 34445556655
No 138
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.66 E-value=8.1e-16 Score=129.84 Aligned_cols=98 Identities=26% Similarity=0.337 Sum_probs=83.8
Q ss_pred EEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCC----CCEEEEEEEEccC
Q 009539 254 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE----SQAVELAVYDWEQ 329 (532)
Q Consensus 254 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~----~~~L~v~v~d~d~ 329 (532)
-.|+|+|++|++|+ .|.+||||++++++++ ++|++++++.||.|||+|.|.+..+. ...|.|+|||++.
T Consensus 4 ~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~---~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~ 76 (111)
T cd04011 4 FQVRVRVIEARQLV----GGNIDPVVKVEVGGQK---KYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS 76 (111)
T ss_pred EEEEEEEEEcccCC----CCCCCCEEEEEECCEe---eeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc
Confidence 47899999999998 4789999999999654 48999999999999999999986543 4689999999999
Q ss_pred CCCCCeeEEEEEeCccCCCCCCe---EEEEec
Q 009539 330 VGKHDKMGMNVVPLKELTPEEPS---VKTLDL 358 (532)
Q Consensus 330 ~~~d~~iG~~~i~l~~l~~~~~~---~~~l~l 358 (532)
.++|++||++.++++++..+..+ ..|++|
T Consensus 77 ~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L 108 (111)
T cd04011 77 LRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLL 108 (111)
T ss_pred cccCCccEEEEECCccccCCCCCcceEEEEEe
Confidence 88999999999999999776443 456665
No 139
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.66 E-value=2.2e-15 Score=132.52 Aligned_cols=90 Identities=27% Similarity=0.516 Sum_probs=81.4
Q ss_pred eEEEEEEeeeecCCCC--CCCCCEEEEEEcCeeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCCCC
Q 009539 412 GLLVVIVHEAQDVEGK--HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP 489 (532)
Q Consensus 412 g~L~v~i~~a~~L~~~--~~~dpyv~v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~~ 489 (532)
|.|+|+|++|+||+.. +.+||||+++++++..+|++++++.||+|||.|.|.+.++ ...+.++|||++. ++.
T Consensus 2 G~L~V~Vi~a~nL~~~d~~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~--~~~l~~~V~D~d~----~~~ 75 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDFTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNP--MAPLKLEVFDKDT----FSK 75 (145)
T ss_pred eEEEEEEEeeECCCCCCCCCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCC--CCEEEEEEEECCC----CCC
Confidence 7899999999999753 5799999999999999999999999999999999999875 5689999999986 678
Q ss_pred CceeEEEEEechhhhccc
Q 009539 490 KETLGYIDINLSDVVSNK 507 (532)
Q Consensus 490 d~~lG~~~i~L~~l~~~~ 507 (532)
|++||++.+++.++....
T Consensus 76 dd~iG~a~i~l~~l~~~~ 93 (145)
T cd04038 76 DDSMGEAEIDLEPLVEAA 93 (145)
T ss_pred CCEEEEEEEEHHHhhhhh
Confidence 999999999999987643
No 140
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.66 E-value=4.3e-16 Score=133.51 Aligned_cols=109 Identities=17% Similarity=0.230 Sum_probs=87.6
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeC--CcCCceeeEeeCCCC-CceeecEEEEEeeCCC-CCEEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITE--DKLPSKKTTVKHKNL-NPEWNEEYNFTVRDPE-SQAVELAV 324 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~--~~~~~~~T~v~~~t~-nP~Wne~f~f~v~~~~-~~~L~v~v 324 (532)
|....|.|+|+|++|+||++.+..+.+||||++++-+ .+..++||+++++|. ||+|||+|.|.+.... .-.|.++|
T Consensus 9 Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v 88 (135)
T cd08692 9 FQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKL 88 (135)
T ss_pred ecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEE
Confidence 4556789999999999999886566789999999864 344567999999995 6999999999997543 34788999
Q ss_pred EEccCCCCCCeeEEEEEeCccCCCCCCeEEEEec
Q 009539 325 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 358 (532)
Q Consensus 325 ~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l 358 (532)
||++..+++++||++.++..+... ...++|.+.
T Consensus 89 ~d~~~~~~n~~IG~v~lG~~~~~~-~~~~hW~~m 121 (135)
T cd08692 89 YSRSSVRRKHFLGQVWISSDSSSS-EAVEQWKDT 121 (135)
T ss_pred EeCCCCcCCceEEEEEECCccCCc-hhhhhHHHH
Confidence 999988999999999999987432 234566554
No 141
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.65 E-value=3.6e-16 Score=137.09 Aligned_cols=121 Identities=20% Similarity=0.359 Sum_probs=98.6
Q ss_pred ccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEEcC-----eeEE
Q 009539 373 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----EERK 444 (532)
Q Consensus 373 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~-----~~~k 444 (532)
.|+|.+++.|.|. .|.|.|+|++|++|+.. +.+||||++++.+ +.++
T Consensus 1 ~G~l~~~l~y~~~-------------------------~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~k 55 (136)
T cd08402 1 LGDICFSLRYVPT-------------------------AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKK 55 (136)
T ss_pred CcEEEEEeEEcCC-------------------------CCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceee
Confidence 4999999999873 68999999999999863 5799999999952 2458
Q ss_pred EeeecCCCCCcccceEEEEecCCCCC-CeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCCCCeEE
Q 009539 445 TKHVKKNRDPRWEEEFQFMLEEPPTN-DRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRI 523 (532)
Q Consensus 445 T~vv~~t~nP~w~e~f~f~v~~~~~~-~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i 523 (532)
|++++++.||.|||.|.|.+...... ..|.++|||++. ++.+++||++.+++... +....+|+++...++..+
T Consensus 56 T~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~----~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~~~~~~~ 129 (136)
T cd08402 56 TTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYDR----IGKNDPIGKVVLGCNAT--GAELRHWSDMLASPRRPI 129 (136)
T ss_pred ccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCCC----CCCCceeEEEEECCccC--ChHHHHHHHHHhCCCCee
Confidence 99999999999999999998653222 379999999985 67899999999999763 445678888877665555
Q ss_pred E
Q 009539 524 Q 524 (532)
Q Consensus 524 ~ 524 (532)
.
T Consensus 130 ~ 130 (136)
T cd08402 130 A 130 (136)
T ss_pred e
Confidence 4
No 142
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.65 E-value=7.6e-16 Score=129.89 Aligned_cols=102 Identities=25% Similarity=0.391 Sum_probs=86.4
Q ss_pred CCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCCCeeEEEEEeCccCCCC-
Q 009539 271 LLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPE- 349 (532)
Q Consensus 271 ~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~iG~~~i~l~~l~~~- 349 (532)
..|.+||||+++++++. ..+|++++++.||+|||+|.|.+.+...+.|.|+|||++.. +|++||.+.++|+++...
T Consensus 9 ~~G~~dPYv~v~v~~~~--~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~ 85 (111)
T cd04052 9 KTGLLSPYAELYLNGKL--VYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDAT 85 (111)
T ss_pred cCCCCCceEEEEECCEE--EEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhh
Confidence 46889999999998643 35899999999999999999999876678899999999988 899999999999998643
Q ss_pred CCeEEEEecccccccCCCCCCccccEEEEEEEEEEc
Q 009539 350 EPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPF 385 (532)
Q Consensus 350 ~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~ 385 (532)
.....|++|. +...|+|++++.|.|.
T Consensus 86 ~~~~~w~~L~----------~~~~G~i~~~~~~~p~ 111 (111)
T cd04052 86 SVGQQWFPLS----------GNGQGRIRISALWKPV 111 (111)
T ss_pred hccceeEECC----------CCCCCEEEEEEEEecC
Confidence 3456788872 2467999999999983
No 143
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.65 E-value=2.5e-16 Score=137.73 Aligned_cols=110 Identities=34% Similarity=0.528 Sum_probs=89.5
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCC--cCCceeeEeeCCCCCceeecEEEEEeeCC--CCCEEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAV 324 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v 324 (532)
+....|.|+|+|++|++|+..+..|.+||||++++.+. ....++|++++++.||+|||+|.|.+... ....|.|+|
T Consensus 9 y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v 88 (134)
T cd08403 9 YLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAV 88 (134)
T ss_pred EcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 44567899999999999999999999999999999642 33456899999999999999999998542 235799999
Q ss_pred EEccCCCCCCeeEEEEEeCccCCCCCCeEEEEeccc
Q 009539 325 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLK 360 (532)
Q Consensus 325 ~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~ 360 (532)
||++..+++++||++.+++... +.....|.++..
T Consensus 89 ~d~~~~~~~~~IG~~~l~~~~~--~~~~~~w~~~~~ 122 (134)
T cd08403 89 VDYDRVGHNELIGVCRVGPNAD--GQGREHWNEMLA 122 (134)
T ss_pred EECCCCCCCceeEEEEECCCCC--CchHHHHHHHHH
Confidence 9999999999999999998733 334455655543
No 144
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.65 E-value=8.2e-16 Score=131.75 Aligned_cols=99 Identities=28% Similarity=0.425 Sum_probs=86.9
Q ss_pred EEEcCCCCcCCCCCCCCcEEEEEEeCCc----CCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccC----CC
Q 009539 260 VVKAMNLKKKDLLGASDPYVKLKITEDK----LPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQ----VG 331 (532)
Q Consensus 260 v~~A~~L~~~d~~g~~dpyv~v~~~~~~----~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~----~~ 331 (532)
.++|++|+..+..|++||||++++.+.. ...++|++++++.||+|||+|.|.+.....+.|.++|||+|. .+
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~ 85 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS 85 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence 4889999999988999999999998754 123699999999999999999998765456789999999997 78
Q ss_pred CCCeeEEEEEeCccCCCCCCeEEEEec
Q 009539 332 KHDKMGMNVVPLKELTPEEPSVKTLDL 358 (532)
Q Consensus 332 ~d~~iG~~~i~l~~l~~~~~~~~~l~l 358 (532)
++++||++.++++++..+.....++.|
T Consensus 86 ~~d~iG~~~i~l~~l~~~~~~~~~~~l 112 (120)
T cd04048 86 DHDFLGEAECTLGEIVSSPGQKLTLPL 112 (120)
T ss_pred CCcEEEEEEEEHHHHhcCCCcEEEEEc
Confidence 999999999999999988777788877
No 145
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.65 E-value=3.9e-16 Score=136.82 Aligned_cols=116 Identities=19% Similarity=0.304 Sum_probs=95.4
Q ss_pred ccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEEcC--e---eEE
Q 009539 373 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG--E---ERK 444 (532)
Q Consensus 373 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~--~---~~k 444 (532)
+|+|.++++|.+. .+.|.|+|++|+||+.. +.+||||++++.+ + ++|
T Consensus 1 ~G~l~~~l~y~~~-------------------------~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~k 55 (136)
T cd08404 1 RGELLLSLCYQPT-------------------------TNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKK 55 (136)
T ss_pred CCeEEEEEEEeCC-------------------------CCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEc
Confidence 5999999999753 67899999999999863 6799999999843 2 458
Q ss_pred EeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCCC
Q 009539 445 TKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK 519 (532)
Q Consensus 445 T~vv~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~ 519 (532)
|++++++.||.|||+|.|.+..... ...+.|+|||++. ++++++||++.+++.. ......+|++|.+.+
T Consensus 56 T~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~----~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~~ 125 (136)
T cd08404 56 THVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSDR----VTKNEVIGRLVLGPKA--SGSGGHHWKEVCNPP 125 (136)
T ss_pred CccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECCC----CCCCccEEEEEECCcC--CCchHHHHHHHHhCC
Confidence 9999999999999999999875322 2468899999986 6789999999999998 344567898886543
No 146
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.65 E-value=4.8e-16 Score=180.62 Aligned_cols=117 Identities=27% Similarity=0.577 Sum_probs=106.7
Q ss_pred CceEEEEEEeeeecCCCC-CCCCCEEEEEEcCe-eEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCC
Q 009539 410 GGGLLVVIVHEAQDVEGK-HHTNPYARILFRGE-ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL 487 (532)
Q Consensus 410 ~~g~L~v~i~~a~~L~~~-~~~dpyv~v~~~~~-~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~ 487 (532)
-.|.|+|+|++|+||..+ +.+||||+++++++ ++||++++++.||+|||.|+|.+.+++.+++++++|||+|. |
T Consensus 1978 ~~G~L~V~V~~a~nl~~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~----f 2053 (2102)
T PLN03200 1978 LPGSLTVTIKRGNNLKQSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNT----F 2053 (2102)
T ss_pred CCcceEEEEeeccccccccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCc----c
Confidence 479999999999999965 78999999999965 78999999999999999999999998767789999999985 5
Q ss_pred CCCceeEEEEEechhhhccceeceEEEeCC--CCCeE---EEEEEEEEe
Q 009539 488 HPKETLGYIDINLSDVVSNKRINEKYHLID--SKNGR---IQIELQWRT 531 (532)
Q Consensus 488 ~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~--~~~G~---i~l~~~w~p 531 (532)
+++.||.++|+|.++..++.++.||+|.+ ++.|+ |++.++|+|
T Consensus 2054 -~kd~~G~~~i~l~~vv~~~~~~~~~~L~~~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2054 -GKSSLGKVTIQIDRVVMEGTYSGEYSLNPESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred -CCCCCceEEEEHHHHhcCceeeeeeecCcccccCCCcceEEEEEEecC
Confidence 45599999999999999999999999987 56899 999999987
No 147
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.65 E-value=6.8e-16 Score=135.05 Aligned_cols=111 Identities=23% Similarity=0.385 Sum_probs=91.4
Q ss_pred cCCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCc---CCceeeEeeCCCCCceeecEEEEEeeC--CCCCEEEE
Q 009539 248 AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK---LPSKKTTVKHKNLNPEWNEEYNFTVRD--PESQAVEL 322 (532)
Q Consensus 248 ~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~---~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v 322 (532)
.|+...+.|.|+|++|+||+..+..|.+||||++++.+.. ..++||++++++.||+|||+|.|.+.. .....|.|
T Consensus 9 ~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~ 88 (138)
T cd08408 9 EYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMF 88 (138)
T ss_pred EEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEE
Confidence 4666789999999999999999988999999999997532 234699999999999999999999874 34579999
Q ss_pred EEEEccCCCCCCeeEEEEEeCccCCCCCCeEEEEecc
Q 009539 323 AVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL 359 (532)
Q Consensus 323 ~v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~ 359 (532)
+|||++..+++++||++.+++.....+ ..++|.++.
T Consensus 89 ~V~~~~~~~~~~~iG~v~l~~~~~~~~-~~~hW~~~l 124 (138)
T cd08408 89 SVYNKRKMKRKEMIGWFSLGLNSSGEE-EEEHWNEMK 124 (138)
T ss_pred EEEECCCCCCCcEEEEEEECCcCCCch-HHHHHHHHH
Confidence 999999999999999999988755432 234555553
No 148
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.65 E-value=1.3e-15 Score=131.08 Aligned_cols=108 Identities=31% Similarity=0.490 Sum_probs=91.1
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCC--cCCceeeEeeCCCCCceeecEEEEEeeCC---CCCEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVRDP---ESQAVELA 323 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~---~~~~L~v~ 323 (532)
++...+.|+|+|++|++|++.+..+.+||||++++.+. .....+|++++++.||+|||+|.|..... ....+.|+
T Consensus 10 y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~ 89 (123)
T cd04035 10 YDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLL 89 (123)
T ss_pred EeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEE
Confidence 44556889999999999999988889999999998542 23457999999999999999999963322 25689999
Q ss_pred EEEccCCCCCCeeEEEEEeCccCCCCCCeEEEEe
Q 009539 324 VYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLD 357 (532)
Q Consensus 324 v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~ 357 (532)
|||++.. ++++||++.++++++..++.+++++.
T Consensus 90 v~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~~ 122 (123)
T cd04035 90 VLDEDRF-GNDFLGETRIPLKKLKPNQTKQFNIC 122 (123)
T ss_pred EEEcCCc-CCeeEEEEEEEcccCCCCcceEeecc
Confidence 9999988 89999999999999999888877754
No 149
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.65 E-value=4.2e-15 Score=129.79 Aligned_cols=126 Identities=16% Similarity=0.240 Sum_probs=100.9
Q ss_pred CeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCC-
Q 009539 252 PVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQV- 330 (532)
Q Consensus 252 ~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~- 330 (532)
-...|.|.|++|++|+.++ +|||++.+++... .||+++.++.||.|+|+|+|..... ...++|.||+.+..
T Consensus 9 ~~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~v--aRT~v~~~~~nP~W~E~F~f~~~~~-~~~l~v~v~k~~~~~ 80 (146)
T cd04013 9 TENSLKLWIIEAKGLPPKK-----RYYCELCLDKTLY--ARTTSKLKTDTLFWGEHFEFSNLPP-VSVITVNLYRESDKK 80 (146)
T ss_pred EEEEEEEEEEEccCCCCcC-----CceEEEEECCEEE--EEEEEEcCCCCCcceeeEEecCCCc-ccEEEEEEEEccCcc
Confidence 3567999999999998765 8999999998654 5999999999999999999986543 47899999876532
Q ss_pred C---CCCeeEEEEEeCccCCCCCCeEEEEecccccccC---CCCCCccccEEEEEEEEEEc
Q 009539 331 G---KHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLN---DGQNEKSRGQLVVEFIYKPF 385 (532)
Q Consensus 331 ~---~d~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~---~~~~~~~~G~l~l~l~~~p~ 385 (532)
+ ++++||.+.||+.++..+...+.|+++....... ........+.|++++.|.+.
T Consensus 81 ~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 81 KKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred ccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 2 5789999999999999998999999986542211 00113456899999999985
No 150
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.65 E-value=3.6e-16 Score=137.08 Aligned_cols=111 Identities=35% Similarity=0.554 Sum_probs=90.8
Q ss_pred cCCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeC--CcCCceeeEeeCCCCCceeecEEEEEeeCCC--CCEEEEE
Q 009539 248 AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITE--DKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE--SQAVELA 323 (532)
Q Consensus 248 ~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~--~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~--~~~L~v~ 323 (532)
.+....|.|.|+|++|++|+..+..|.+||||++++.+ +....++|++++++.||.|||+|.|.+.... ...|.|+
T Consensus 9 ~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~ 88 (136)
T cd08402 9 RYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVT 88 (136)
T ss_pred EEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence 35567789999999999999999889999999999964 2334568999999999999999999986432 3579999
Q ss_pred EEEccCCCCCCeeEEEEEeCccCCCCCCeEEEEeccc
Q 009539 324 VYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLK 360 (532)
Q Consensus 324 v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~ 360 (532)
|||++..++|++||++.+++... +.....|.++..
T Consensus 89 v~d~~~~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~ 123 (136)
T cd08402 89 VLDYDRIGKNDPIGKVVLGCNAT--GAELRHWSDMLA 123 (136)
T ss_pred EEeCCCCCCCceeEEEEECCccC--ChHHHHHHHHHh
Confidence 99999999999999999999864 333455665543
No 151
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.64 E-value=3.1e-15 Score=128.95 Aligned_cols=118 Identities=26% Similarity=0.408 Sum_probs=93.8
Q ss_pred EEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCC
Q 009539 254 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKH 333 (532)
Q Consensus 254 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d 333 (532)
..|.|+|.+|+ |...+..+.+||||+++++++ ..++|++++++.||+|||+|.|.+.. .+.|.|+|||++..++|
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~--~~~kT~v~~~t~~P~Wne~f~~~~~~--~~~l~~~V~d~~~~~~~ 76 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQ--PPKKTEVSKKTSNPKWNEHFTVLVTP--QSTLEFKVWSHHTLKAD 76 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCc--ccEEeeeeCCCCCCccccEEEEEeCC--CCEEEEEEEeCCCCCCC
Confidence 36899999998 555555789999999999865 24699999999999999999999854 57999999999999999
Q ss_pred CeeEEEEEeCccCCCCCC-----eEEEEecccccccCCCCCCccccEEEEEE
Q 009539 334 DKMGMNVVPLKELTPEEP-----SVKTLDLLKNMDLNDGQNEKSRGQLVVEF 380 (532)
Q Consensus 334 ~~iG~~~i~l~~l~~~~~-----~~~~l~l~~~~~~~~~~~~~~~G~l~l~l 380 (532)
++||++.+++.++..... ...|+++.+.. ..+....|+|++++
T Consensus 77 ~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~G~~~~~~ 124 (125)
T cd04021 77 VLLGEASLDLSDILKNHNGKLENVKLTLNLSSEN----KGSSVKVGELTVIL 124 (125)
T ss_pred cEEEEEEEEHHHhHhhcCCCccceEEEEEEEccC----CCcceeeeeEEEEe
Confidence 999999999999886432 23466664321 11357789988875
No 152
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.64 E-value=4.5e-15 Score=128.19 Aligned_cols=112 Identities=19% Similarity=0.274 Sum_probs=94.3
Q ss_pred ceEEEEEEeeeecCCCC---CCCCCEEEEEEcCeeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCC
Q 009539 411 GGLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL 487 (532)
Q Consensus 411 ~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~ 487 (532)
.++++|+|++|++|+.. +.+||||+++++++..+|++++++.||+|||.|.|.+.+. ...|.|+|||++. +
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~--~~~l~i~V~d~~~----~ 75 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKP--RSPIKIQVWNSNL----L 75 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCC--CCEEEEEEEECCC----C
Confidence 46899999999999863 6899999999999999999999999999999999988753 4689999999874 3
Q ss_pred CCCceeEEEEEechhhhccceeceEEEeCC-------CCCeEEEEEEEEEe
Q 009539 488 HPKETLGYIDINLSDVVSNKRINEKYHLID-------SKNGRIQIELQWRT 531 (532)
Q Consensus 488 ~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~-------~~~G~i~l~~~w~p 531 (532)
.|++||++.++++++. ....++|+|.. ...|+|.+++...+
T Consensus 76 -~d~~lG~~~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 76 -CDEFLGQATLSADPND--SQTLRTLPLRKRGRDAAGEVPGTISVKVTSSD 123 (126)
T ss_pred -CCCceEEEEEecccCC--CcCceEEEcccCCCCCCCCCCCEEEEEEEEcc
Confidence 4899999999998753 34568899942 13699999987654
No 153
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.64 E-value=4.2e-15 Score=131.19 Aligned_cols=114 Identities=18% Similarity=0.409 Sum_probs=90.7
Q ss_pred EEEEeeeec--CCC---CCCCCCEEEEEE--c---CeeEEEeeecCCCCCcccceEEEEecCCC-------CCCeEEEEE
Q 009539 415 VVIVHEAQD--VEG---KHHTNPYARILF--R---GEERKTKHVKKNRDPRWEEEFQFMLEEPP-------TNDRLHVEV 477 (532)
Q Consensus 415 ~v~i~~a~~--L~~---~~~~dpyv~v~~--~---~~~~kT~vv~~t~nP~w~e~f~f~v~~~~-------~~~~l~v~V 477 (532)
.++|..|++ |+. .+.+||||++++ . .++.||+++++|.||+|||.|.|.+.... ....|.++|
T Consensus 5 el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V 84 (155)
T cd08690 5 ELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEV 84 (155)
T ss_pred EEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEE
Confidence 455566665 555 357999999997 2 24679999999999999999999996531 134799999
Q ss_pred EEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCCC---CeEEEEEEEEEe
Q 009539 478 CSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK---NGRIQIELQWRT 531 (532)
Q Consensus 478 ~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~---~G~i~l~~~w~p 531 (532)
||++. +++.|++||++.++|+.+..+.....|++|.++. +|+++++++.+.
T Consensus 85 ~d~~~---f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k~~Gg~l~v~ir~r~ 138 (155)
T cd08690 85 YHKGG---FLRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRKATGGKLEVKVRLRE 138 (155)
T ss_pred EeCCC---cccCCCeeEEEEEEcccccccCcceEEEEhhhCCCCcCCEEEEEEEecC
Confidence 99974 1357999999999999998877778899998543 799999998875
No 154
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.64 E-value=1.2e-15 Score=133.31 Aligned_cols=110 Identities=25% Similarity=0.446 Sum_probs=86.9
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCC--cCCceeeEeeCCCCCceeecEEEEEeeCC--CCCEEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAV 324 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v 324 (532)
+....|.|.|+|++|++|+..|..|.+||||++++.+. ....++|+++++|.||+|||+|.|.+... ....|.|+|
T Consensus 9 y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V 88 (135)
T cd08410 9 YLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTV 88 (135)
T ss_pred ECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEE
Confidence 44566899999999999999998899999999998532 23457899999999999999999998542 244799999
Q ss_pred EEccCCCCCCeeEEEEEeCccCCCCCCeEEEEecc
Q 009539 325 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL 359 (532)
Q Consensus 325 ~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~ 359 (532)
||+|..+++++||++.+........ ....|..+.
T Consensus 89 ~d~d~~~~~~~iG~~~l~~~~~~~~-~~~~W~~l~ 122 (135)
T cd08410 89 YGHNVKSSNDFIGRIVIGQYSSGPS-ETNHWRRML 122 (135)
T ss_pred EeCCCCCCCcEEEEEEEcCccCCch-HHHHHHHHH
Confidence 9999999999999998765443321 234455543
No 155
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.63 E-value=4.9e-16 Score=136.24 Aligned_cols=117 Identities=19% Similarity=0.377 Sum_probs=94.7
Q ss_pred ccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCC---CCCCCCEEEEEEc--C---eeEE
Q 009539 373 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEG---KHHTNPYARILFR--G---EERK 444 (532)
Q Consensus 373 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~---~~~~dpyv~v~~~--~---~~~k 444 (532)
+|+|.++++|.+. .+.|.|+|++|+||+. .+.+||||++++. + .+.+
T Consensus 1 ~G~l~~sl~y~~~-------------------------~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~k 55 (136)
T cd08405 1 RGELLLSLCYNPT-------------------------ANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKK 55 (136)
T ss_pred CcEEEEEEEEcCC-------------------------CCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCcccccc
Confidence 5999999999863 7899999999999976 3689999999983 2 2458
Q ss_pred EeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCCCC
Q 009539 445 TKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKN 520 (532)
Q Consensus 445 T~vv~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~ 520 (532)
|++++++.||.|||.|.|.+..... ...|.|+|||++. ++.+++||++.+++.+. +....+|+++...++
T Consensus 56 T~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~~----~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~~~~ 126 (136)
T cd08405 56 TVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKDR----LSRNDLIGKIYLGWKSG--GLELKHWKDMLSKPR 126 (136)
T ss_pred CcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECCC----CCCCcEeEEEEECCccC--CchHHHHHHHHhCCC
Confidence 9999999999999999999864222 3479999999975 57899999999999875 334567777765543
No 156
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.63 E-value=8.7e-16 Score=134.39 Aligned_cols=120 Identities=20% Similarity=0.354 Sum_probs=100.7
Q ss_pred cEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEEcCe-----eEEE
Q 009539 374 GQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRGE-----ERKT 445 (532)
Q Consensus 374 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~~-----~~kT 445 (532)
|+|++.++|.+. .+.|.|+|++|+||+.. +.+||||++++.+. ..+|
T Consensus 1 G~i~~~l~y~~~-------------------------~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T 55 (134)
T cd00276 1 GELLLSLSYLPT-------------------------AERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKT 55 (134)
T ss_pred CeEEEEEEeeCC-------------------------CCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecC
Confidence 889999999863 67899999999999863 58999999998653 4599
Q ss_pred eeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCCCCeEEE
Q 009539 446 KHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQ 524 (532)
Q Consensus 446 ~vv~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~ 524 (532)
++++++.||.|||+|.|.+..... ...|.|+|||.+. ++.+++||++.+++++ .+....+||+|.++++..|.
T Consensus 56 ~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~----~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~~~~~~ 129 (134)
T cd00276 56 SVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDS----VGRNEVIGQVVLGPDS--GGEELEHWNEMLASPRKPIA 129 (134)
T ss_pred cceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCC----CCCCceeEEEEECCCC--CCcHHHHHHHHHhCCCCceE
Confidence 999999999999999999876421 3589999999985 4678999999999999 55567899999887666554
No 157
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.63 E-value=6e-15 Score=126.08 Aligned_cols=106 Identities=25% Similarity=0.543 Sum_probs=92.0
Q ss_pred eEEEEEEeeeecCCCC---CCCCCEEEEEEcCe-eEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCC
Q 009539 412 GLLVVIVHEAQDVEGK---HHTNPYARILFRGE-ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL 487 (532)
Q Consensus 412 g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~~-~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~ 487 (532)
|.|.|+|++|++|+.. +.+||||+++++++ ..+|++++++.||.|||.|.|.+... .+.|.|+|||++. +
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~--~~~L~v~v~d~~~----~ 74 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSP--NQKITLEVMDYEK----V 74 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCC--CCEEEEEEEECCC----C
Confidence 6899999999999863 58999999999774 56999999999999999999998764 4689999999985 5
Q ss_pred CCCceeEEEEEechhhhccceeceEEEeCCCCCeEEE
Q 009539 488 HPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQ 524 (532)
Q Consensus 488 ~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~ 524 (532)
+.|++||++.+++.++..+ ....||.|.++..+++.
T Consensus 75 ~~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~~~~~~~ 110 (120)
T cd04045 75 GKDRSLGSVEINVSDLIKK-NEDGKYVEYDDEEERLK 110 (120)
T ss_pred CCCCeeeEEEEeHHHhhCC-CCCceEEecCCCcceee
Confidence 7889999999999999887 56899999888766654
No 158
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.63 E-value=5.2e-16 Score=135.93 Aligned_cols=111 Identities=24% Similarity=0.333 Sum_probs=92.2
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCc--CCceeeEeeCCCCCceeecEEEEEeeC--CCCCEEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRD--PESQAVELAV 324 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~v 324 (532)
|....+.|.|+|++|+||+..+ .+.+||||++++.+.. ...++|++++++.||+|||+|.|.+.. .....|.|+|
T Consensus 10 y~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V 88 (137)
T cd08409 10 YNPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSV 88 (137)
T ss_pred ECCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEE
Confidence 4455689999999999999988 7889999999997542 235689999999999999999999853 2356899999
Q ss_pred EEccCCCCCCeeEEEEEeCccCCCCCCeEEEEeccc
Q 009539 325 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLK 360 (532)
Q Consensus 325 ~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~ 360 (532)
||++..+++++||++.++......+...++|.++.+
T Consensus 89 ~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~ 124 (137)
T cd08409 89 MQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLS 124 (137)
T ss_pred EeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHh
Confidence 999999999999999999776666666666766644
No 159
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.63 E-value=8.1e-15 Score=126.77 Aligned_cols=110 Identities=17% Similarity=0.289 Sum_probs=92.1
Q ss_pred EEEEEEeeeecCCCC---CCCCCEEEEEEcCe---eEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccC
Q 009539 413 LLVVIVHEAQDVEGK---HHTNPYARILFRGE---ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGL 486 (532)
Q Consensus 413 ~L~v~i~~a~~L~~~---~~~dpyv~v~~~~~---~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~ 486 (532)
.++|+|++|++|+.. +.+||||++++++. ..||++++++.||.|||.|.|.+... ....|.|+|||++.
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~-~~~~L~i~v~d~d~---- 76 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAG-EPLWISATVWDRSF---- 76 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCC-CCCEEEEEEEECCC----
Confidence 588999999999863 57999999998653 46999999999999999999999874 35689999999975
Q ss_pred CCCCceeEEEEEechhhhcc---ceeceEEEeCCCCCeEEEEEEEE
Q 009539 487 LHPKETLGYIDINLSDVVSN---KRINEKYHLIDSKNGRIQIELQW 529 (532)
Q Consensus 487 ~~~d~~lG~~~i~L~~l~~~---~~~~~~~~L~~~~~G~i~l~~~w 529 (532)
++.+++||++.++|.++... .....|++|.. +|+|+|++.+
T Consensus 77 ~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~--~g~i~l~~~~ 120 (126)
T cd04043 77 VGKHDLCGRASLKLDPKRFGDDGLPREIWLDLDT--QGRLLLRVSM 120 (126)
T ss_pred CCCCceEEEEEEecCHHHcCCCCCCceEEEEcCC--CCeEEEEEEE
Confidence 46789999999999987543 24568999964 7999988876
No 160
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.63 E-value=4.5e-15 Score=127.63 Aligned_cols=107 Identities=23% Similarity=0.418 Sum_probs=88.7
Q ss_pred EEEEEeeeecCCCC---CCCCCEEEEEEc-CeeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCCCC
Q 009539 414 LVVIVHEAQDVEGK---HHTNPYARILFR-GEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP 489 (532)
Q Consensus 414 L~v~i~~a~~L~~~---~~~dpyv~v~~~-~~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~~ 489 (532)
|+|+|++|++|+.. +.+||||+++++ .+.++|++++++.||.|||.|+|.+.. .+.|.++|||++. ++.
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~---~~~l~i~V~d~~~----~~~ 74 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP---SSIITIQVFDQKK----FKK 74 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC---CCEEEEEEEECCC----CCC
Confidence 78999999999864 579999999997 556799999999999999999999965 4689999999975 333
Q ss_pred --CceeEEEEEechhhhccc-eeceEEEeCCCC-------CeEEEEEE
Q 009539 490 --KETLGYIDINLSDVVSNK-RINEKYHLIDSK-------NGRIQIEL 527 (532)
Q Consensus 490 --d~~lG~~~i~L~~l~~~~-~~~~~~~L~~~~-------~G~i~l~~ 527 (532)
|++||++.++++++.... ....||+|...+ .|+|.+++
T Consensus 75 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 75 KDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred CCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 689999999999998654 347799994432 57777765
No 161
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.63 E-value=5e-15 Score=123.37 Aligned_cols=95 Identities=25% Similarity=0.426 Sum_probs=75.0
Q ss_pred EEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCc--CCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEc------
Q 009539 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDW------ 327 (532)
Q Consensus 256 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~------ 327 (532)
|.|+|++|+||+ |.+||||++++++.. ....+|+++++|+||+|||+|.|.+.. .+.|++.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~--s~~L~~~v~d~~~~~~~ 73 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG--SQTLRILCYEKCYSKVK 73 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC--CCEEEEEEEEccccccc
Confidence 689999999996 558999999997632 345799999999999999999999964 67999999998
Q ss_pred -cCCCCCCeeEEEEEeCc--cCCCCCCeEEEEe
Q 009539 328 -EQVGKHDKMGMNVVPLK--ELTPEEPSVKTLD 357 (532)
Q Consensus 328 -d~~~~d~~iG~~~i~l~--~l~~~~~~~~~l~ 357 (532)
|..++|+++|.+.+.|. .+.....+...+.
T Consensus 74 ~d~~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~ 106 (118)
T cd08686 74 LDGEGTDAIMGKGQIQLDPQSLQTKKWQEKVIS 106 (118)
T ss_pred ccccCcccEEEEEEEEECHHHhccCCeeEEEEE
Confidence 45688999988877764 4444433333343
No 162
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.62 E-value=1e-15 Score=133.97 Aligned_cols=120 Identities=18% Similarity=0.324 Sum_probs=95.6
Q ss_pred cEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEEcC------eeEE
Q 009539 374 GQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG------EERK 444 (532)
Q Consensus 374 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~------~~~k 444 (532)
|+|.+++.|.+. .+.|.|+|++|+||+.. +.+||||++++.. .++|
T Consensus 2 ~ei~~sL~Y~~~-------------------------~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~k 56 (138)
T cd08408 2 PELLLGLEYNAL-------------------------TGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSK 56 (138)
T ss_pred CeEEEEeEEcCC-------------------------CCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeecc
Confidence 789999999863 78999999999999863 6799999999953 1359
Q ss_pred EeeecCCCCCcccceEEEEecCCC-CCCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCCCCeEE
Q 009539 445 TKHVKKNRDPRWEEEFQFMLEEPP-TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRI 523 (532)
Q Consensus 445 T~vv~~t~nP~w~e~f~f~v~~~~-~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i 523 (532)
|++++++.||+|||+|.|.+.... ....|.++|||.+. ++++++||++.+++...-. ....+|+.+..+++-.|
T Consensus 57 T~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~~~----~~~~~~iG~v~l~~~~~~~-~~~~hW~~~l~~~~~~v 131 (138)
T cd08408 57 TSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNKRK----MKRKEMIGWFSLGLNSSGE-EEEEHWNEMKESKGQQV 131 (138)
T ss_pred ceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEECCC----CCCCcEEEEEEECCcCCCc-hHHHHHHHHHhCCCCEE
Confidence 999999999999999999997532 23489999999986 5789999999999875432 23467888766544443
No 163
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.62 E-value=6.6e-15 Score=127.34 Aligned_cols=111 Identities=23% Similarity=0.442 Sum_probs=90.5
Q ss_pred EEEEEEeeeecCCCC---CCCCCEEEEEEcCeeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccccc----
Q 009539 413 LLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIG---- 485 (532)
Q Consensus 413 ~L~v~i~~a~~L~~~---~~~dpyv~v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~---- 485 (532)
.|+|+|++|++|+.. +.+||||+++++++..+|++++++.||.|||.|.|.+... .+.+.++|||++....
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~--~~~l~i~v~d~d~~~~~~~~ 79 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNS--SDRIKVRVWDEDDDIKSRLK 79 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCC--CCEEEEEEEECCCCcccccc
Confidence 689999999999863 5789999999998888999999999999999999998653 3589999999874200
Q ss_pred --C-CCCCceeEEEEEechhhhccceeceEEEeCCC-----CCeEEEEEE
Q 009539 486 --L-LHPKETLGYIDINLSDVVSNKRINEKYHLIDS-----KNGRIQIEL 527 (532)
Q Consensus 486 --~-~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~-----~~G~i~l~~ 527 (532)
+ .+.+++||++.+++.++.. ....||.|... .+|+|.+++
T Consensus 80 ~~~~~~~~~~iG~~~i~l~~~~~--~~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 80 QKFTRESDDFLGQTIIEVRTLSG--EMDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred eeccccCCCcceEEEEEhHHccC--CCCeEEECccCCCCCcEeEEEEEEC
Confidence 0 1368999999999998743 45789999753 268888864
No 164
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.62 E-value=5e-15 Score=129.21 Aligned_cols=105 Identities=21% Similarity=0.251 Sum_probs=89.4
Q ss_pred cccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEEcC-------e
Q 009539 372 SRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-------E 441 (532)
Q Consensus 372 ~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~-------~ 441 (532)
..|+|.+++.|.+. .+.|.|+|++|++|+.. +.+||||++++.+ .
T Consensus 1 ~~G~l~~~l~y~~~-------------------------~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~ 55 (133)
T cd04009 1 PYGVLTVKAYYRAS-------------------------EQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVP 55 (133)
T ss_pred CceEEEEEEEEcCC-------------------------CCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCcccc
Confidence 36999999999752 57899999999999863 6899999999963 3
Q ss_pred eEEEeeecCCCCCcccceEEEEecCCC---CCCeEEEEEEEccccccCCCCCceeEEEEEechhhhc
Q 009539 442 ERKTKHVKKNRDPRWEEEFQFMLEEPP---TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVS 505 (532)
Q Consensus 442 ~~kT~vv~~t~nP~w~e~f~f~v~~~~---~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~ 505 (532)
.+||++++++.||+|||.|.|.+...+ ....|.++|||++. ++.+++||++.++|+++..
T Consensus 56 ~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d~----~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 56 TPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKDYDL----LGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred ccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEEecCC----CCCCcEeEEEEEeHHHCCc
Confidence 569999999999999999999987531 23489999999985 5679999999999999975
No 165
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.61 E-value=1.9e-15 Score=132.18 Aligned_cols=119 Identities=17% Similarity=0.337 Sum_probs=94.6
Q ss_pred cEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEEcC-----eeEEE
Q 009539 374 GQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----EERKT 445 (532)
Q Consensus 374 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~-----~~~kT 445 (532)
|+|.+++.|.|. .+.|+|+|++|++|+.. +.+||||++++.. ..++|
T Consensus 1 g~l~~~~~y~~~-------------------------~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT 55 (134)
T cd08403 1 GELMFSLCYLPT-------------------------AGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKT 55 (134)
T ss_pred CeEEEEEEEcCC-------------------------CCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecC
Confidence 889999999863 78999999999999863 6799999999842 24589
Q ss_pred eeecCCCCCcccceEEEEecCCCCC-CeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCCCCeEE
Q 009539 446 KHVKKNRDPRWEEEFQFMLEEPPTN-DRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRI 523 (532)
Q Consensus 446 ~vv~~t~nP~w~e~f~f~v~~~~~~-~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i 523 (532)
++++++.||.|||.|.|.+...... ..+.++|||++. ++.+++||++.+++.. ..+...+|+++...++-.+
T Consensus 56 ~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~----~~~~~~IG~~~l~~~~--~~~~~~~w~~~~~~~~~~~ 128 (134)
T cd08403 56 SVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYDR----VGHNELIGVCRVGPNA--DGQGREHWNEMLANPRKPI 128 (134)
T ss_pred CcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECCC----CCCCceeEEEEECCCC--CCchHHHHHHHHHCCCCee
Confidence 9999999999999999998643222 369999999985 5789999999999873 2344567887765544333
No 166
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.61 E-value=1.4e-15 Score=132.89 Aligned_cols=117 Identities=21% Similarity=0.326 Sum_probs=92.5
Q ss_pred cEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEEcC-----eeEEE
Q 009539 374 GQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----EERKT 445 (532)
Q Consensus 374 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~-----~~~kT 445 (532)
|+|.++++|.|. .|.|.|+|++|+||+.. +.+||||++++.. ++++|
T Consensus 1 G~i~~~l~y~~~-------------------------~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT 55 (135)
T cd08410 1 GELLLSLNYLPS-------------------------AGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKT 55 (135)
T ss_pred CcEEEEEEECCC-------------------------CCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcC
Confidence 889999999863 68899999999999863 6899999999832 24699
Q ss_pred eeecCCCCCcccceEEEEecCCCCC-CeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCCCC
Q 009539 446 KHVKKNRDPRWEEEFQFMLEEPPTN-DRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKN 520 (532)
Q Consensus 446 ~vv~~t~nP~w~e~f~f~v~~~~~~-~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~ 520 (532)
++++++.||+|||+|.|.+...... ..+.++|||++. .+++++||++.|+....- .+...+|+.+...++
T Consensus 56 ~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d~----~~~~~~iG~~~l~~~~~~-~~~~~~W~~l~~~~~ 126 (135)
T cd08410 56 SCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHNV----KSSNDFIGRIVIGQYSSG-PSETNHWRRMLNSQR 126 (135)
T ss_pred ccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCCC----CCCCcEEEEEEEcCccCC-chHHHHHHHHHhCCC
Confidence 9999999999999999998643232 369999999975 578999999987764332 223577888766543
No 167
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.61 E-value=1.6e-15 Score=132.50 Aligned_cols=104 Identities=14% Similarity=0.320 Sum_probs=85.3
Q ss_pred ceEEEEEEeeeecCCCC---CCCCCEEEEEEcC-----eeEEEeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcc
Q 009539 411 GGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----EERKTKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVS 481 (532)
Q Consensus 411 ~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~-----~~~kT~vv~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~ 481 (532)
.+.|.|+|++|+||+.. +.+||||++++.+ ...+|++++++.||+|||+|.|.+..... ...|.++|||++
T Consensus 12 ~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d 91 (133)
T cd08384 12 RRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKD 91 (133)
T ss_pred CCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeCC
Confidence 78999999999999863 5799999999953 24699999999999999999999875322 347999999997
Q ss_pred ccccCCCCCceeEEEEEechhhhccceeceEEEeCCCCC
Q 009539 482 SRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKN 520 (532)
Q Consensus 482 ~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~ 520 (532)
. .+.+++||++.++++. .++...+||++...++
T Consensus 92 ~----~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~~~~ 124 (133)
T cd08384 92 I----GKSNDYIGGLQLGINA--KGERLRHWLDCLKNPD 124 (133)
T ss_pred C----CCCccEEEEEEEecCC--CCchHHHHHHHHhCCC
Confidence 5 4678999999999985 3445678988866543
No 168
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.61 E-value=5.8e-15 Score=126.51 Aligned_cols=92 Identities=27% Similarity=0.422 Sum_probs=80.5
Q ss_pred CceEEEEEEeeeecCCC--CCCCCCEEEEEEcCeeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCC
Q 009539 410 GGGLLVVIVHEAQDVEG--KHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL 487 (532)
Q Consensus 410 ~~g~L~v~i~~a~~L~~--~~~~dpyv~v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~ 487 (532)
..|.|+|+|++|++|+. .+.+||||+++++++.+||++++++.||+|||+|.|........+.|.|+|||++. +
T Consensus 26 ~~~~L~V~V~~A~~L~~d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~----~ 101 (127)
T cd04032 26 GLATLTVTVLRATGLWGDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDN----G 101 (127)
T ss_pred CcEEEEEEEEECCCCCcCcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCC----C
Confidence 56899999999999985 35789999999999999999999999999999999985443345689999999986 5
Q ss_pred CCCceeEEEEEechhhhc
Q 009539 488 HPKETLGYIDINLSDVVS 505 (532)
Q Consensus 488 ~~d~~lG~~~i~L~~l~~ 505 (532)
+.|++||++.++|.....
T Consensus 102 s~dd~IG~~~i~l~~~~~ 119 (127)
T cd04032 102 WDDDLLGTCSVVPEAGVH 119 (127)
T ss_pred CCCCeeEEEEEEecCCce
Confidence 789999999999997664
No 169
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.60 E-value=6.2e-15 Score=124.35 Aligned_cols=98 Identities=22% Similarity=0.473 Sum_probs=81.9
Q ss_pred eEEEEEEeeeecCCC---C-CCCCCEEEEEEcC---eeEEEeeecCCCCCcccceEEEEecCCC--CCCeEEEEEEEccc
Q 009539 412 GLLVVIVHEAQDVEG---K-HHTNPYARILFRG---EERKTKHVKKNRDPRWEEEFQFMLEEPP--TNDRLHVEVCSVSS 482 (532)
Q Consensus 412 g~L~v~i~~a~~L~~---~-~~~dpyv~v~~~~---~~~kT~vv~~t~nP~w~e~f~f~v~~~~--~~~~l~v~V~d~~~ 482 (532)
|+|+|+|++|++|+. . +.+||||++++.+ ...+|++++++.||+|||.|.|.+.... ....|.++|||++.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 689999999999985 3 6799999999853 3469999999999999999999886531 23589999999986
Q ss_pred cccCCCCCceeEEEEEechhhhccceeceEEEeC
Q 009539 483 RIGLLHPKETLGYIDINLSDVVSNKRINEKYHLI 516 (532)
Q Consensus 483 ~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~ 516 (532)
++.|++||++.+++.++... ..|+++.
T Consensus 81 ----~~~dd~lG~~~i~l~~l~~~---~~~~~~~ 107 (111)
T cd04041 81 ----FTADDRLGRVEIDLKELIED---RNWMGRR 107 (111)
T ss_pred ----CCCCCcceEEEEEHHHHhcC---CCCCccc
Confidence 57899999999999999843 4677764
No 170
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.60 E-value=3.8e-16 Score=152.20 Aligned_cols=108 Identities=33% Similarity=0.569 Sum_probs=92.8
Q ss_pred CeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCc--CCceeeEeeCCCCCceeecEEEEEeeCCC-CCEEEEEEEEcc
Q 009539 252 PVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPE-SQAVELAVYDWE 328 (532)
Q Consensus 252 ~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~-~~~L~v~v~d~d 328 (532)
....|+|+|.+|+||.++|.+|.|||||++.+-+.. ..+++|++++.++||+|||+|.|.+.... +..|.|+|||+|
T Consensus 178 ~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWD 257 (683)
T KOG0696|consen 178 KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWD 257 (683)
T ss_pred cCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEeccc
Confidence 345799999999999999999999999999997643 33568999999999999999999986543 678999999999
Q ss_pred CCCCCCeeEEEEEeCccCCCCCCeEEEEeccc
Q 009539 329 QVGKHDKMGMNVVPLKELTPEEPSVKTLDLLK 360 (532)
Q Consensus 329 ~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~ 360 (532)
+.+++|++|..++.+++|... +...|+.|+.
T Consensus 258 rTsRNDFMGslSFgisEl~K~-p~~GWyKlLs 288 (683)
T KOG0696|consen 258 RTSRNDFMGSLSFGISELQKA-PVDGWYKLLS 288 (683)
T ss_pred ccccccccceecccHHHHhhc-chhhHHHHhh
Confidence 999999999999999999876 3455666643
No 171
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.60 E-value=6.5e-15 Score=128.27 Aligned_cols=106 Identities=36% Similarity=0.571 Sum_probs=91.6
Q ss_pred EEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCC--cCCceeeEeeCCCCCceeecEEEEEeeCC-CCCEEEEEEEEccCC
Q 009539 254 GILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVRDP-ESQAVELAVYDWEQV 330 (532)
Q Consensus 254 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~-~~~~L~v~v~d~d~~ 330 (532)
+.|+|+|++|++|+..+..+.+||||++.+.+. ....++|++++++.||.|||+|.|.+... ..+.|.++|||++..
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~ 92 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT 92 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence 789999999999999888889999999999752 22356999999999999999999998654 256899999999988
Q ss_pred CCCCeeEEEEEeCccCCCCCCeEEEEeccc
Q 009539 331 GKHDKMGMNVVPLKELTPEEPSVKTLDLLK 360 (532)
Q Consensus 331 ~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~ 360 (532)
+++++||++.++++++... ....|++|..
T Consensus 93 ~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~ 121 (131)
T cd04026 93 TRNDFMGSLSFGVSELIKM-PVDGWYKLLN 121 (131)
T ss_pred CCcceeEEEEEeHHHhCcC-ccCceEECcC
Confidence 8999999999999999865 6777888743
No 172
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.60 E-value=2.1e-14 Score=123.85 Aligned_cols=103 Identities=25% Similarity=0.473 Sum_probs=89.9
Q ss_pred eEEEEEEeeeecCCCC---CCCCCEEEEEEcCeeEEEeeecC-CCCCcccceEEEEecCCC--CCCeEEEEEEEcccccc
Q 009539 412 GLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKK-NRDPRWEEEFQFMLEEPP--TNDRLHVEVCSVSSRIG 485 (532)
Q Consensus 412 g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~~~~kT~vv~~-t~nP~w~e~f~f~v~~~~--~~~~l~v~V~d~~~~~~ 485 (532)
|.|.|+|++|++|+.. +.+||||+++++++.++|+++++ +.||.|||.|.|.+.... ....|.|+|||++.
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~--- 77 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN--- 77 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc---
Confidence 6799999999999863 58999999999998889999885 899999999999998752 24589999999975
Q ss_pred CCCCCceeEEEEEechhhhccceeceEEEeCCC
Q 009539 486 LLHPKETLGYIDINLSDVVSNKRINEKYHLIDS 518 (532)
Q Consensus 486 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~ 518 (532)
++.+++||++.++|.++..++....||+|...
T Consensus 78 -~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p~ 109 (124)
T cd04049 78 -FSDDDFIGEATIHLKGLFEEGVEPGTAELVPA 109 (124)
T ss_pred -CCCCCeEEEEEEEhHHhhhCCCCcCceEeecc
Confidence 56799999999999999988888999999754
No 173
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.60 E-value=1.3e-15 Score=133.20 Aligned_cols=110 Identities=34% Similarity=0.465 Sum_probs=92.6
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCc--CCceeeEeeCCCCCceeecEEEEEeeCCC--CCEEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPE--SQAVELAV 324 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~--~~~L~v~v 324 (532)
+....+.|.|+|++|+||+..+..+.+||||++++.+.. ...++|++++++.||.|||+|.|.+.... ...|.|+|
T Consensus 9 y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v 88 (134)
T cd00276 9 YLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITV 88 (134)
T ss_pred eeCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEE
Confidence 344568999999999999999888899999999997642 23468999999999999999999986543 57899999
Q ss_pred EEccCCCCCCeeEEEEEeCccCCCCCCeEEEEeccc
Q 009539 325 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLK 360 (532)
Q Consensus 325 ~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~ 360 (532)
||++..+++++||.+.+++++ .+...+.|+++..
T Consensus 89 ~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~ 122 (134)
T cd00276 89 VDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLA 122 (134)
T ss_pred EecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHh
Confidence 999988899999999999999 4555667777754
No 174
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.59 E-value=2.7e-14 Score=121.74 Aligned_cols=114 Identities=23% Similarity=0.366 Sum_probs=87.5
Q ss_pred EEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCC--CCEEEEEEEEccCCCCC
Q 009539 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE--SQAVELAVYDWEQVGKH 333 (532)
Q Consensus 256 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~--~~~L~v~v~d~d~~~~d 333 (532)
|.|+|++|++|+.. |.+||||++++++.. .++|+++++ .||.|||+|.|.+.... ...|.+.+||.+...++
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~--~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~ 75 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVE--VARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRD 75 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEE--eEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCe
Confidence 78999999999976 789999999998643 358999888 99999999999987643 35678888888766556
Q ss_pred CeeEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEE
Q 009539 334 DKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY 382 (532)
Q Consensus 334 ~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~ 382 (532)
..+|.+. +..+..+...+.|++|.+.. ......|+|++++.|
T Consensus 76 ~~~g~v~--l~~~~~~~~~~~w~~L~~~~-----~~~~~~G~l~l~~~~ 117 (117)
T cd08383 76 IVIGKVA--LSKLDLGQGKDEWFPLTPVD-----PDSEVQGSVRLRARY 117 (117)
T ss_pred eEEEEEE--ecCcCCCCcceeEEECccCC-----CCCCcCceEEEEEEC
Confidence 6666654 55555566778898874321 135679999999976
No 175
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.59 E-value=3.7e-14 Score=122.95 Aligned_cols=119 Identities=29% Similarity=0.412 Sum_probs=94.5
Q ss_pred EEEEEEEEcCCCCcCC--CCCCCCcEEEEEEeCCc---CCceeeEeeCCCC-CceeecEEEEEeeCCCCCEEEEEEEEcc
Q 009539 255 ILHVKVVKAMNLKKKD--LLGASDPYVKLKITEDK---LPSKKTTVKHKNL-NPEWNEEYNFTVRDPESQAVELAVYDWE 328 (532)
Q Consensus 255 ~L~V~v~~A~~L~~~d--~~g~~dpyv~v~~~~~~---~~~~~T~v~~~t~-nP~Wne~f~f~v~~~~~~~L~v~v~d~d 328 (532)
.|+|+|++|++|+..+ ..+.+||||++++.+.. ...++|+++.++. ||+|||+|.|.+..+....|.++|||++
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~ 82 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED 82 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence 6899999999999887 57889999999996532 3457899887765 9999999999998766678999999999
Q ss_pred CCCCCCeeEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEE
Q 009539 329 QVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY 382 (532)
Q Consensus 329 ~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~ 382 (532)
.. ++++||++.++++++..+. .+++|... .......|.|.+.+.+
T Consensus 83 ~~-~~~~iG~~~~~l~~l~~g~---~~~~l~~~-----~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 83 SG-DDDFLGQACLPLDSLRQGY---RHVPLLDS-----KGEPLELSTLFVHIDI 127 (128)
T ss_pred CC-CCcEeEEEEEEhHHhcCce---EEEEecCC-----CCCCCcceeEEEEEEE
Confidence 87 8999999999999996542 34555321 1113567888888764
No 176
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.59 E-value=2.3e-14 Score=122.26 Aligned_cols=109 Identities=22% Similarity=0.342 Sum_probs=85.9
Q ss_pred EEEEEeeeecCCCCCCCCCEEEEEEcCee-EEEeeecCCCCCcccceEEEEecCCCCC-CeEEEEEEEccccccCCCCCc
Q 009539 414 LVVIVHEAQDVEGKHHTNPYARILFRGEE-RKTKHVKKNRDPRWEEEFQFMLEEPPTN-DRLHVEVCSVSSRIGLLHPKE 491 (532)
Q Consensus 414 L~v~i~~a~~L~~~~~~dpyv~v~~~~~~-~kT~vv~~t~nP~w~e~f~f~v~~~~~~-~~l~v~V~d~~~~~~~~~~d~ 491 (532)
|.|+|++|+||+..+.+||||+++++++. .+|+++++ .||.|||+|.|.+...... ..+.+.++|++. .+.+.
T Consensus 2 L~v~vi~a~~l~~~~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~----~~~~~ 76 (117)
T cd08383 2 LRLRILEAKNLPSKGTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRS----KDRDI 76 (117)
T ss_pred eEEEEEEecCCCcCCCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEeccc----CCCee
Confidence 68999999999987889999999998864 69999999 9999999999999764222 367778888764 34566
Q ss_pred eeEEEEEechhhhccceeceEEEeCCCC-----CeEEEEEEEE
Q 009539 492 TLGYIDINLSDVVSNKRINEKYHLIDSK-----NGRIQIELQW 529 (532)
Q Consensus 492 ~lG~~~i~L~~l~~~~~~~~~~~L~~~~-----~G~i~l~~~w 529 (532)
.+|++.+.. +..+...++||+|.... .|+|+++++|
T Consensus 77 ~~g~v~l~~--~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 77 VIGKVALSK--LDLGQGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred EEEEEEecC--cCCCCcceeEEECccCCCCCCcCceEEEEEEC
Confidence 777766554 44456678999997532 6999999875
No 177
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.58 E-value=1.1e-14 Score=122.63 Aligned_cols=95 Identities=27% Similarity=0.525 Sum_probs=79.8
Q ss_pred EEEEcCCCCcCCCCCCCCcEEEEEEeCCc---CCceeeEeeCCCCCceeecEEEEEeeCCC----CCEEEEEEEEccCCC
Q 009539 259 KVVKAMNLKKKDLLGASDPYVKLKITEDK---LPSKKTTVKHKNLNPEWNEEYNFTVRDPE----SQAVELAVYDWEQVG 331 (532)
Q Consensus 259 ~v~~A~~L~~~d~~g~~dpyv~v~~~~~~---~~~~~T~v~~~t~nP~Wne~f~f~v~~~~----~~~L~v~v~d~d~~~ 331 (532)
-.++|++|+..|..|.+||||++++.+.. ...++|++++++.||+|| +|.|.+.... .+.|.|+|||++..+
T Consensus 5 ~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~ 83 (110)
T cd04047 5 LQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSG 83 (110)
T ss_pred EEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCCC
Confidence 34689999999999999999999987642 234799999999999999 7888764332 579999999999999
Q ss_pred CCCeeEEEEEeCccCCCCCCeEE
Q 009539 332 KHDKMGMNVVPLKELTPEEPSVK 354 (532)
Q Consensus 332 ~d~~iG~~~i~l~~l~~~~~~~~ 354 (532)
+|++||++.++++++......+.
T Consensus 84 ~d~~iG~~~~~l~~l~~~~~~~~ 106 (110)
T cd04047 84 KHDLIGEFETTLDELLKSSPLEF 106 (110)
T ss_pred CCcEEEEEEEEHHHHhcCCCceE
Confidence 99999999999999986655443
No 178
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=1.1e-15 Score=144.74 Aligned_cols=225 Identities=24% Similarity=0.394 Sum_probs=168.6
Q ss_pred cCCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCC--cCCceeeEeeCCCCCceeecEEEEE--eeCC-CCCEEEE
Q 009539 248 AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFT--VRDP-ESQAVEL 322 (532)
Q Consensus 248 ~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~Wne~f~f~--v~~~-~~~~L~v 322 (532)
.|+.....+..++.+|++|+.++..|..|||++..+.+. +..+.+|++..+++||.|+|+-.+. ..+. ....+++
T Consensus 87 ~y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk 166 (362)
T KOG1013|consen 87 LYDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRK 166 (362)
T ss_pred hhhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhhe
Confidence 456667789999999999999999999999999999753 2333578889999999999875543 3322 2457889
Q ss_pred EEEEccCCCCCCeeEEEEEeCccCCCCCCeEEEEecccccc--cCCCCCCccccEEEEEEEEEEccCCCCCccccccccc
Q 009539 323 AVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMD--LNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTV 400 (532)
Q Consensus 323 ~v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~--~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~ 400 (532)
.|.|.+.+..++++|+..+++..+...+.+.+..-|.+.+. ..+....+.+|++.+++.|-..
T Consensus 167 ~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~--------------- 231 (362)
T KOG1013|consen 167 VVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSST--------------- 231 (362)
T ss_pred eeccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCcC---------------
Confidence 99999999999999999999999987765433222222221 1222234688999999877542
Q ss_pred ccCCCCCCCCceEEEEEEeeeecCCC---CCCCCCEEEEEEcCe-----eEEEeeecCCCCCcccceEEEEecCCCC-CC
Q 009539 401 QKAPENTPAGGGLLVVIVHEAQDVEG---KHHTNPYARILFRGE-----ERKTKHVKKNRDPRWEEEFQFMLEEPPT-ND 471 (532)
Q Consensus 401 ~~~~~~~~~~~g~L~v~i~~a~~L~~---~~~~dpyv~v~~~~~-----~~kT~vv~~t~nP~w~e~f~f~v~~~~~-~~ 471 (532)
..-+.|++.+|..|.. ++.+||||..++... ++||.+.++|.+|+|++.|.|.+..... ..
T Consensus 232 ----------~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~ 301 (362)
T KOG1013|consen 232 ----------TPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYK 301 (362)
T ss_pred ----------CCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcc
Confidence 4557788899888865 478999999998532 3599999999999999999999876433 24
Q ss_pred eEEEEEEEccccccCCCCCceeEEEEEech
Q 009539 472 RLHVEVCSVSSRIGLLHPKETLGYIDINLS 501 (532)
Q Consensus 472 ~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~ 501 (532)
++.|.|||++.+ ...+++|-+...+.
T Consensus 302 kv~lsvgd~~~G----~s~d~~GG~~~g~~ 327 (362)
T KOG1013|consen 302 KVALSVGDYDIG----KSNDSIGGSMLGGY 327 (362)
T ss_pred eEEEeecccCCC----cCccCCCccccccc
Confidence 899999999853 35677776655443
No 179
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.57 E-value=1.8e-14 Score=124.41 Aligned_cols=109 Identities=19% Similarity=0.322 Sum_probs=90.2
Q ss_pred EEEEEEeeeecCCCC---CCCCCEEEEEEcC-eeEEEeeec-CCCCCcccceEEEEecCCC---CCCeEEEEEEEccccc
Q 009539 413 LLVVIVHEAQDVEGK---HHTNPYARILFRG-EERKTKHVK-KNRDPRWEEEFQFMLEEPP---TNDRLHVEVCSVSSRI 484 (532)
Q Consensus 413 ~L~v~i~~a~~L~~~---~~~dpyv~v~~~~-~~~kT~vv~-~t~nP~w~e~f~f~v~~~~---~~~~l~v~V~d~~~~~ 484 (532)
.|+|+|++|++|+.. +.+||||++++++ ++.+|++++ ++.||.|||.|.|.+.... ....|.++|||++.
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~-- 78 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP-- 78 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC--
Confidence 378999999999863 6899999999988 778999976 5899999999999997752 15689999999975
Q ss_pred cCCCCCceeEEEEEechhhhccce-----eceEEEeCCC---CCeEEEE
Q 009539 485 GLLHPKETLGYIDINLSDVVSNKR-----INEKYHLIDS---KNGRIQI 525 (532)
Q Consensus 485 ~~~~~d~~lG~~~i~L~~l~~~~~-----~~~~~~L~~~---~~G~i~l 525 (532)
++.|++||++.++|.++..... ...||+|.+. +.|.|++
T Consensus 79 --~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~~ 125 (125)
T cd04051 79 --SLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLNF 125 (125)
T ss_pred --CCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEeC
Confidence 4679999999999999998654 3689999754 3577763
No 180
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.56 E-value=2.6e-14 Score=125.04 Aligned_cols=102 Identities=28% Similarity=0.409 Sum_probs=87.7
Q ss_pred EEEEEeeeecCCCC--CCCCCEEEEEEc----CeeEEEeeecCCCCCcccceEEEEecCCC--------------CCCeE
Q 009539 414 LVVIVHEAQDVEGK--HHTNPYARILFR----GEERKTKHVKKNRDPRWEEEFQFMLEEPP--------------TNDRL 473 (532)
Q Consensus 414 L~v~i~~a~~L~~~--~~~dpyv~v~~~----~~~~kT~vv~~t~nP~w~e~f~f~v~~~~--------------~~~~l 473 (532)
|+|.|++|+||+.. +.+||||+++++ +..++|++++++.||.|||.|.|.+.... ....+
T Consensus 1 L~V~Vi~A~~L~~~~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l 80 (137)
T cd08675 1 LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSEL 80 (137)
T ss_pred CEEEEEEccCCCcccCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEE
Confidence 57899999999854 789999999998 66789999999999999999999987642 23489
Q ss_pred EEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCCC
Q 009539 474 HVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK 519 (532)
Q Consensus 474 ~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~ 519 (532)
.|+|||++. ++.+++||++.++|.++........||+|...+
T Consensus 81 ~i~V~d~~~----~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~ 122 (137)
T cd08675 81 RVELWHASM----VSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE 122 (137)
T ss_pred EEEEEcCCc----CcCCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence 999999985 467999999999999998777789999997643
No 181
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.55 E-value=1e-13 Score=119.47 Aligned_cols=108 Identities=25% Similarity=0.478 Sum_probs=88.9
Q ss_pred EEEEEEeeeecCCC--CCCCCCEEEEEEcCe-eEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCCCC
Q 009539 413 LLVVIVHEAQDVEG--KHHTNPYARILFRGE-ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP 489 (532)
Q Consensus 413 ~L~v~i~~a~~L~~--~~~~dpyv~v~~~~~-~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~~ 489 (532)
.|.|+|.+|+.+.. .+.+||||+++++++ ..+|++++++.||.|||.|.|.+.. .+.|.++|||++. .+.
T Consensus 3 ~L~V~i~~a~l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~---~~~l~~~V~d~~~----~~~ 75 (125)
T cd04021 3 QLQITVESAKLKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP---QSTLEFKVWSHHT----LKA 75 (125)
T ss_pred eEEEEEEeeECCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC---CCEEEEEEEeCCC----CCC
Confidence 58899999984443 257999999999988 7899999999999999999999864 3689999999986 568
Q ss_pred CceeEEEEEechhhhccce-----eceEEEeCCCC------CeEEEEEE
Q 009539 490 KETLGYIDINLSDVVSNKR-----INEKYHLIDSK------NGRIQIEL 527 (532)
Q Consensus 490 d~~lG~~~i~L~~l~~~~~-----~~~~~~L~~~~------~G~i~l~~ 527 (532)
+++||++.++|.++..... ...|++|.... .|++.+.+
T Consensus 76 ~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 76 DVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred CcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 9999999999999987432 33589996433 68888875
No 182
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.55 E-value=6.5e-14 Score=120.52 Aligned_cols=106 Identities=21% Similarity=0.351 Sum_probs=87.5
Q ss_pred ccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEEcC-----eeEE
Q 009539 373 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----EERK 444 (532)
Q Consensus 373 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~-----~~~k 444 (532)
.|+|++++.|.+. .+.|+|+|++|++|+.. +.+||||++++.+ ...+
T Consensus 1 ~G~~~~~l~y~~~-------------------------~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~r 55 (123)
T cd04035 1 LGTLEFTLLYDPA-------------------------NSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLR 55 (123)
T ss_pred CcEEEEEEEEeCC-------------------------CCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCcee
Confidence 4899999999863 67899999999999863 5799999999842 3569
Q ss_pred EeeecCCCCCcccceEEEEecCC--CCCCeEEEEEEEccccccCCCCCceeEEEEEechhhhccce
Q 009539 445 TKHVKKNRDPRWEEEFQFMLEEP--PTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKR 508 (532)
Q Consensus 445 T~vv~~t~nP~w~e~f~f~v~~~--~~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~ 508 (532)
|++++++.||.|||.|.|..... .....+.++|||++. + ++++||++.++|+++..++.
T Consensus 56 T~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~----~-~~~~iG~~~i~l~~l~~~~~ 116 (123)
T cd04035 56 TKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDR----F-GNDFLGETRIPLKKLKPNQT 116 (123)
T ss_pred eeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcCC----c-CCeeEEEEEEEcccCCCCcc
Confidence 99999999999999999963321 123589999999975 4 68999999999999987653
No 183
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.55 E-value=1.3e-13 Score=119.95 Aligned_cols=111 Identities=20% Similarity=0.351 Sum_probs=87.6
Q ss_pred EEEEEEeeeecCCCC--CCCCCEEEEEEcC-------------eeEEEeeecCCCCCcc-cceEEEEecCCCCCCeEEEE
Q 009539 413 LLVVIVHEAQDVEGK--HHTNPYARILFRG-------------EERKTKHVKKNRDPRW-EEEFQFMLEEPPTNDRLHVE 476 (532)
Q Consensus 413 ~L~v~i~~a~~L~~~--~~~dpyv~v~~~~-------------~~~kT~vv~~t~nP~w-~e~f~f~v~~~~~~~~l~v~ 476 (532)
+..|++++|+||+.. +.+||||++++.+ +.+||++++++.||+| ||.|.|.+.. ++.|.++
T Consensus 2 ~~~~~~~~A~~L~~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~---~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLKKGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP---TDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCCCccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC---CCEEEEE
Confidence 467899999999853 6899999999953 3579999999999999 9999999853 3689999
Q ss_pred EEEccccccCCCCCceeEEEEEechhhhccc---eeceEEEeCCCC-----CeEEEEEE
Q 009539 477 VCSVSSRIGLLHPKETLGYIDINLSDVVSNK---RINEKYHLIDSK-----NGRIQIEL 527 (532)
Q Consensus 477 V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~---~~~~~~~L~~~~-----~G~i~l~~ 527 (532)
|||++.. +-...+++||++.+++++++... ....||+|.... +|+|.+++
T Consensus 79 V~D~~~~-~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 79 VKDKFAK-SRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEecCCC-CCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 9998642 10112799999999999998753 356789986432 58888765
No 184
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.54 E-value=5.8e-14 Score=124.19 Aligned_cols=98 Identities=26% Similarity=0.428 Sum_probs=83.6
Q ss_pred CCCceEEEEEEeeeecCCC---CCCCCCEEEEEEcCe-----------------------------eEEEeeecCCCCCc
Q 009539 408 PAGGGLLVVIVHEAQDVEG---KHHTNPYARILFRGE-----------------------------ERKTKHVKKNRDPR 455 (532)
Q Consensus 408 ~~~~g~L~v~i~~a~~L~~---~~~~dpyv~v~~~~~-----------------------------~~kT~vv~~t~nP~ 455 (532)
....+.|.|+|++|+||+. .+.+||||++++... ..+|++++++.||.
T Consensus 24 ~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~ 103 (153)
T cd08676 24 EPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPV 103 (153)
T ss_pred CCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCc
Confidence 3468999999999999976 368999999998531 25899999999999
Q ss_pred ccceEEEEecCCCCCCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEe
Q 009539 456 WEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHL 515 (532)
Q Consensus 456 w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L 515 (532)
|||.|.|.+... ....|.|+|||++ +++||++.++++++.. ...++||+|
T Consensus 104 WnE~F~f~v~~~-~~~~L~i~V~D~d--------d~~IG~v~i~l~~l~~-~~~d~W~~L 153 (153)
T cd08676 104 WNETFRFEVEDV-SNDQLHLDIWDHD--------DDFLGCVNIPLKDLPS-CGLDSWFKL 153 (153)
T ss_pred cccEEEEEeccC-CCCEEEEEEEecC--------CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence 999999999764 3568999999985 5899999999999984 457899986
No 185
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.53 E-value=8.7e-14 Score=118.24 Aligned_cols=100 Identities=27% Similarity=0.402 Sum_probs=86.7
Q ss_pred EEEEEeeeecCCCC---CCCCCEEEEEEcCee-EEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCCCC
Q 009539 414 LVVIVHEAQDVEGK---HHTNPYARILFRGEE-RKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP 489 (532)
Q Consensus 414 L~v~i~~a~~L~~~---~~~dpyv~v~~~~~~-~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~~ 489 (532)
|+|+|++|++|+.. +.+||||+++++++. .+|+++.++.+|.|||.|.|.+... ..+.+.++|||++. ++.
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~-~~~~l~~~v~d~~~----~~~ 75 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSR-VRAVLKVEVYDWDR----GGK 75 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccC-CCCEEEEEEEeCCC----CCC
Confidence 57899999999863 578999999997654 6999999999999999999999764 45689999999985 567
Q ss_pred CceeEEEEEechhhhccceeceEEEeCCC
Q 009539 490 KETLGYIDINLSDVVSNKRINEKYHLIDS 518 (532)
Q Consensus 490 d~~lG~~~i~L~~l~~~~~~~~~~~L~~~ 518 (532)
+++||++.+++.++..+.....|++|...
T Consensus 76 ~~~iG~~~~~l~~l~~~~~~~~~~~L~~~ 104 (115)
T cd04040 76 DDLLGSAYIDLSDLEPEETTELTLPLDGQ 104 (115)
T ss_pred CCceEEEEEEHHHcCCCCcEEEEEECcCC
Confidence 99999999999999887778899999754
No 186
>PLN03008 Phospholipase D delta
Probab=99.53 E-value=7.9e-14 Score=149.23 Aligned_cols=98 Identities=19% Similarity=0.450 Sum_probs=86.4
Q ss_pred CCCCCEEEEEEcCee-EEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCCCCCceeEEEEEechhhhcc
Q 009539 428 HHTNPYARILFRGEE-RKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSN 506 (532)
Q Consensus 428 ~~~dpyv~v~~~~~~-~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~ 506 (532)
+.+||||+|.+++++ .||++++++.||+|||+|.|.|.++ ...|.++|+|++. ++ ++.||++.|+|+++..+
T Consensus 75 ~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~--~s~L~f~VkD~D~----~g-aD~IG~a~IPL~~L~~G 147 (868)
T PLN03008 75 ITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHP--FAYLEFQVKDDDV----FG-AQIIGTAKIPVRDIASG 147 (868)
T ss_pred CCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCC--CceEEEEEEcCCc----cC-CceeEEEEEEHHHcCCC
Confidence 578999999998765 4999999999999999999999874 3589999999885 54 68999999999999998
Q ss_pred ceeceEEEeCCC------CCeEEEEEEEEEeC
Q 009539 507 KRINEKYHLIDS------KNGRIQIELQWRTA 532 (532)
Q Consensus 507 ~~~~~~~~L~~~------~~G~i~l~~~w~p~ 532 (532)
+..+.|++|.+. ++|+|+++++|+|+
T Consensus 148 e~vd~Wl~Ll~~~~kp~k~~~kl~v~lqf~pv 179 (868)
T PLN03008 148 ERISGWFPVLGASGKPPKAETAIFIDMKFTPF 179 (868)
T ss_pred CceEEEEEccccCCCCCCCCcEEEEEEEEEEc
Confidence 889999999764 25899999999995
No 187
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.52 E-value=2.2e-13 Score=113.54 Aligned_cols=108 Identities=21% Similarity=0.343 Sum_probs=78.3
Q ss_pred EEEEEeeeecCCCCCCCCCEEEEEEcC-----eeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccc---c
Q 009539 414 LVVIVHEAQDVEGKHHTNPYARILFRG-----EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRI---G 485 (532)
Q Consensus 414 L~v~i~~a~~L~~~~~~dpyv~v~~~~-----~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~---~ 485 (532)
|.|+|++|+||++ .+||||+++++. ...||+++++|.||+|||+|+|.+.. .+.+.+.|||++... .
T Consensus 1 L~V~V~~A~~L~~--~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~---s~~L~~~v~d~~~~~~~~d 75 (118)
T cd08686 1 LNVIVHSAQGFKQ--SANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG---SQTLRILCYEKCYSKVKLD 75 (118)
T ss_pred CEEEEEeCCCCCC--CCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC---CCEEEEEEEEccccccccc
Confidence 5799999999974 599999999864 24699999999999999999999964 368999999984110 1
Q ss_pred CCCCCceeEEEEEech--hhhccceeceEEEeCCCCCeEEEEEEEE
Q 009539 486 LLHPKETLGYIDINLS--DVVSNKRINEKYHLIDSKNGRIQIELQW 529 (532)
Q Consensus 486 ~~~~d~~lG~~~i~L~--~l~~~~~~~~~~~L~~~~~G~i~l~~~w 529 (532)
..+.|+.+|+..+.|+ .+..+......+.|.+ -+|.++++|
T Consensus 76 ~~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~~~~---~~~~~s~~~ 118 (118)
T cd08686 76 GEGTDAIMGKGQIQLDPQSLQTKKWQEKVISMNG---ITVNLSIKF 118 (118)
T ss_pred ccCcccEEEEEEEEECHHHhccCCeeEEEEEecC---EEEEEEEeC
Confidence 1467999977766664 3444444455566642 255555543
No 188
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.52 E-value=1.3e-14 Score=141.68 Aligned_cols=121 Identities=25% Similarity=0.490 Sum_probs=101.9
Q ss_pred CccccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCC---CCCCCCEEEEEEcC-----e
Q 009539 370 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEG---KHHTNPYARILFRG-----E 441 (532)
Q Consensus 370 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~---~~~~dpyv~v~~~~-----~ 441 (532)
...+|+|.+.+... ...|.|+|.+|+||-. +|.+||||++.+-. .
T Consensus 165 tE~RGrl~l~~~~~---------------------------~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~s 217 (683)
T KOG0696|consen 165 TERRGRLYLEAHIK---------------------------RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNES 217 (683)
T ss_pred hhhcceEEEEEEec---------------------------CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchh
Confidence 56789999988653 5689999999999954 58999999999943 3
Q ss_pred eEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCCCCe
Q 009539 442 ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNG 521 (532)
Q Consensus 442 ~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G 521 (532)
++||++++.++||+|||+|+|.+.....+..|.|+|||+|+ .++++++|+.++.+++|+.. ..+.||.|.....|
T Consensus 218 KqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDr----TsRNDFMGslSFgisEl~K~-p~~GWyKlLsqeEG 292 (683)
T KOG0696|consen 218 KQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDR----TSRNDFMGSLSFGISELQKA-PVDGWYKLLSQEEG 292 (683)
T ss_pred hhhhhhhhhhcCccccceeEEecccccccceeEEEEecccc----cccccccceecccHHHHhhc-chhhHHHHhhhhcC
Confidence 46999999999999999999999876555689999999997 58899999999999999875 34789999766555
Q ss_pred E
Q 009539 522 R 522 (532)
Q Consensus 522 ~ 522 (532)
+
T Consensus 293 E 293 (683)
T KOG0696|consen 293 E 293 (683)
T ss_pred c
Confidence 4
No 189
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.51 E-value=5.8e-14 Score=112.02 Aligned_cols=85 Identities=35% Similarity=0.630 Sum_probs=76.9
Q ss_pred EEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCCCe
Q 009539 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDK 335 (532)
Q Consensus 256 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~ 335 (532)
|+|+|++|++|+..+..+.+||||++++.+......+|+++.++.+|.|||+|.|.+..+..+.|.|+|||++..++|++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 78999999999998888899999999999865445799999999999999999999877777789999999999988999
Q ss_pred eEEEE
Q 009539 336 MGMNV 340 (532)
Q Consensus 336 iG~~~ 340 (532)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99974
No 190
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.50 E-value=6.7e-14 Score=163.10 Aligned_cols=121 Identities=21% Similarity=0.415 Sum_probs=102.9
Q ss_pred CCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCC-CCEEEEEEEEccC
Q 009539 251 RPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE-SQAVELAVYDWEQ 329 (532)
Q Consensus 251 ~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~-~~~L~v~v~d~d~ 329 (532)
.-.|.|.|+|++|+||. +..|.+||||++.++.+.. +||++++++.||+|||+|.|.+.++. .+.|.++|||+|.
T Consensus 1977 ~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~--~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~ 2052 (2102)
T PLN03200 1977 CLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPP--RQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNT 2052 (2102)
T ss_pred hCCcceEEEEeeccccc--cccCCCCCeEEEEECCCCc--ccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCc
Confidence 35799999999999998 4468999999999996533 48999999999999999999988765 4679999999999
Q ss_pred CCCCCeeEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccE---EEEEEEEEE
Q 009539 330 VGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQ---LVVEFIYKP 384 (532)
Q Consensus 330 ~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~---l~l~l~~~p 384 (532)
+++ +.||.++|++.++..+.....|++|.+ +++..|+ |++++.|.+
T Consensus 2053 f~k-d~~G~~~i~l~~vv~~~~~~~~~~L~~--------~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2053 FGK-SSLGKVTIQIDRVVMEGTYSGEYSLNP--------ESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred cCC-CCCceEEEEHHHHhcCceeeeeeecCc--------ccccCCCcceEEEEEEecC
Confidence 864 499999999999998888888888853 2456777 999998864
No 191
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.50 E-value=1.2e-13 Score=118.87 Aligned_cols=88 Identities=22% Similarity=0.363 Sum_probs=76.5
Q ss_pred EEEEEEeeeecCCCC---CCCCCEEEEEEcCee--EEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCC
Q 009539 413 LLVVIVHEAQDVEGK---HHTNPYARILFRGEE--RKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL 487 (532)
Q Consensus 413 ~L~v~i~~a~~L~~~---~~~dpyv~v~~~~~~--~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~ 487 (532)
+++|.|++|++|+.. +.+||||+++++++. .||++++++.||+|||.|.|.+..+ ..+.+.++|||++. +
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~-~~~~L~~~V~d~d~----~ 75 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLP-GNSILKISVMDYDL----L 75 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCC-CCCEEEEEEEECCC----C
Confidence 478999999999863 689999999998875 4888899999999999999998754 45689999999985 5
Q ss_pred CCCceeEEEEEechhhhc
Q 009539 488 HPKETLGYIDINLSDVVS 505 (532)
Q Consensus 488 ~~d~~lG~~~i~L~~l~~ 505 (532)
+.|++||++.++|++...
T Consensus 76 ~~dd~iG~~~i~l~~~~~ 93 (124)
T cd04037 76 GSDDLIGETVIDLEDRFF 93 (124)
T ss_pred CCCceeEEEEEeeccccc
Confidence 789999999999998764
No 192
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.48 E-value=3.2e-13 Score=115.64 Aligned_cols=100 Identities=19% Similarity=0.285 Sum_probs=81.2
Q ss_pred EEeeeecCCCC---CCCCCEEEEEEcCee-------EEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccC
Q 009539 417 IVHEAQDVEGK---HHTNPYARILFRGEE-------RKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGL 486 (532)
Q Consensus 417 ~i~~a~~L~~~---~~~dpyv~v~~~~~~-------~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~ 486 (532)
..++|++|+.. +.+||||++++.+.. ++|++++++.||+|||+|.|.+... ..+.+.++|||++.....
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~-~~~~l~~~V~d~d~~~~~ 83 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFE-EVQKLRFEVYDVDSKSKD 83 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeE-eeeEEEEEEEEecCCcCC
Confidence 34789999763 679999999997653 6999999999999999999987543 446899999999851000
Q ss_pred CCCCceeEEEEEechhhhccceeceEEEeCC
Q 009539 487 LHPKETLGYIDINLSDVVSNKRINEKYHLID 517 (532)
Q Consensus 487 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~ 517 (532)
++++++||++.+++++++.+.....+++|..
T Consensus 84 ~~~~d~iG~~~i~l~~l~~~~~~~~~~~l~~ 114 (120)
T cd04048 84 LSDHDFLGEAECTLGEIVSSPGQKLTLPLKG 114 (120)
T ss_pred CCCCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence 4689999999999999998777778999943
No 193
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=4.4e-13 Score=138.23 Aligned_cols=135 Identities=24% Similarity=0.323 Sum_probs=113.7
Q ss_pred CCccccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEEcCe---e
Q 009539 369 NEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRGE---E 442 (532)
Q Consensus 369 ~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~~---~ 442 (532)
+....|+|++++.|.. ....|.|+|.+|++|+.. +.+||||++++... +
T Consensus 149 ~~~~~G~l~fsl~Yd~-------------------------~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k 203 (421)
T KOG1028|consen 149 NVKAVGNLQFSLQYDF-------------------------ELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGK 203 (421)
T ss_pred cceeeeeEEEEEEecc-------------------------cCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCc
Confidence 3568899999999975 377899999999999874 46899999999654 4
Q ss_pred EEEeeecCCCCCcccceEEEEecCC-CCCCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCC---
Q 009539 443 RKTKHVKKNRDPRWEEEFQFMLEEP-PTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDS--- 518 (532)
Q Consensus 443 ~kT~vv~~t~nP~w~e~f~f~v~~~-~~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~--- 518 (532)
++|++.++|+||+|||+|.|.+... .....|.+.|||.|. |+++++||.+.++|..+........|.++...
T Consensus 204 ~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~dr----fsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~ 279 (421)
T KOG1028|consen 204 FKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDR----FSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTD 279 (421)
T ss_pred ceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCC----cccccEEEEEEecCccccccccceeeeccccccCC
Confidence 5999999999999999999997653 234589999999986 89999999999999988776666789998653
Q ss_pred ---CCeEEEEEEEEEeC
Q 009539 519 ---KNGRIQIELQWRTA 532 (532)
Q Consensus 519 ---~~G~i~l~~~w~p~ 532 (532)
..|+|.+++.|.|+
T Consensus 280 ~~~~~gel~~sL~Y~p~ 296 (421)
T KOG1028|consen 280 SEELAGELLLSLCYLPT 296 (421)
T ss_pred cccccceEEEEEEeecC
Confidence 13799999999885
No 194
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.44 E-value=2.7e-12 Score=111.20 Aligned_cols=108 Identities=23% Similarity=0.345 Sum_probs=88.1
Q ss_pred EEEEEEeeeecCCC-----CCCCCCEEEEEEc------CeeEEEeeecCCC-CCcccceEEEEecCCCCCCeEEEEEEEc
Q 009539 413 LLVVIVHEAQDVEG-----KHHTNPYARILFR------GEERKTKHVKKNR-DPRWEEEFQFMLEEPPTNDRLHVEVCSV 480 (532)
Q Consensus 413 ~L~v~i~~a~~L~~-----~~~~dpyv~v~~~------~~~~kT~vv~~t~-nP~w~e~f~f~v~~~~~~~~l~v~V~d~ 480 (532)
.|+|+|++|+||+. .+..||||++++. ....+|++++++. ||.|||+|.|.+..+ ....+.++|||+
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~-~~~~l~~~V~d~ 81 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVP-ELAFLRFVVYDE 81 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCC-CeEEEEEEEEeC
Confidence 68999999999975 3578999999994 3457999988776 999999999999864 345799999999
Q ss_pred cccccCCCCCceeEEEEEechhhhccceeceEEEeCCC-----CCeEEEEEEEE
Q 009539 481 SSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDS-----KNGRIQIELQW 529 (532)
Q Consensus 481 ~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~-----~~G~i~l~~~w 529 (532)
+. . ++++||++.++|+++..+ .++++|.+. ..|+|.++++.
T Consensus 82 ~~----~-~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 82 DS----G-DDDFLGQACLPLDSLRQG---YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred CC----C-CCcEeEEEEEEhHHhcCc---eEEEEecCCCCCCCcceeEEEEEEE
Confidence 75 4 789999999999998543 468898653 25899988875
No 195
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.35 E-value=7e-12 Score=107.54 Aligned_cols=95 Identities=24% Similarity=0.285 Sum_probs=80.6
Q ss_pred EEEEEEEcCCCCcCC--CCCC--CCcEEEEEEeCCcCCceeeEeeCCCCC--ceeecEEEEEeeCC--------------
Q 009539 256 LHVKVVKAMNLKKKD--LLGA--SDPYVKLKITEDKLPSKKTTVKHKNLN--PEWNEEYNFTVRDP-------------- 315 (532)
Q Consensus 256 L~V~v~~A~~L~~~d--~~g~--~dpyv~v~~~~~~~~~~~T~v~~~t~n--P~Wne~f~f~v~~~-------------- 315 (532)
|+|.|.+|++++..+ ..|. +||||++.+.+....+++|.+..+++| |.||+.|.|++..+
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 799999999966443 3564 999999999987555679999999999 99999999887641
Q ss_pred ---------CCCEEEEEEEEccCCCCCCeeEEEEEeCccCCCCC
Q 009539 316 ---------ESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEE 350 (532)
Q Consensus 316 ---------~~~~L~v~v~d~d~~~~d~~iG~~~i~l~~l~~~~ 350 (532)
....|.++|||.|.+++|++||+++++|..+..+.
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 24689999999999999999999999999887653
No 196
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.35 E-value=8.1e-12 Score=105.17 Aligned_cols=93 Identities=17% Similarity=0.377 Sum_probs=73.3
Q ss_pred EEEeeeecCCCC---CCCCCEEEEEEcCe------eEEEeeecCCCCCcccceEEEEecCCC---CCCeEEEEEEEcccc
Q 009539 416 VIVHEAQDVEGK---HHTNPYARILFRGE------ERKTKHVKKNRDPRWEEEFQFMLEEPP---TNDRLHVEVCSVSSR 483 (532)
Q Consensus 416 v~i~~a~~L~~~---~~~dpyv~v~~~~~------~~kT~vv~~t~nP~w~e~f~f~v~~~~---~~~~l~v~V~d~~~~ 483 (532)
+..++|++|+.. +.+||||++++.+. .++|++++++.||+|| .|.|.+.... ....|.++|||++.
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~- 81 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS- 81 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC-
Confidence 345689999864 57999999998653 3699999999999999 6888865322 24689999999986
Q ss_pred ccCCCCCceeEEEEEechhhhccceeceEEEe
Q 009539 484 IGLLHPKETLGYIDINLSDVVSNKRINEKYHL 515 (532)
Q Consensus 484 ~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L 515 (532)
+++|++||++.++++++..++ ..+|.+
T Consensus 82 ---~~~d~~iG~~~~~l~~l~~~~--~~~~~~ 108 (110)
T cd04047 82 ---SGKHDLIGEFETTLDELLKSS--PLEFEL 108 (110)
T ss_pred ---CCCCcEEEEEEEEHHHHhcCC--CceEEe
Confidence 578999999999999998543 345544
No 197
>PLN02223 phosphoinositide phospholipase C
Probab=99.34 E-value=2.6e-11 Score=125.18 Aligned_cols=122 Identities=26% Similarity=0.366 Sum_probs=96.3
Q ss_pred ccceeeeCCccccc----CCCCCccCCCCeEEEEEEEEEcCCCCc-----CCCCCCCCcEEEEEEeCCc--CCceeeEee
Q 009539 228 VANMYLWPKTLEVP----ILDPSKAYRRPVGILHVKVVKAMNLKK-----KDLLGASDPYVKLKITEDK--LPSKKTTVK 296 (532)
Q Consensus 228 ~~~~~v~P~~~~~~----l~~~~~~~~~~~g~L~V~v~~A~~L~~-----~d~~g~~dpyv~v~~~~~~--~~~~~T~v~ 296 (532)
-++++..|..|..+ .+++.. .......|.|+|+.|.+++. .+.....||||+|.+.|-. ...++|++.
T Consensus 380 ~CGYVLKP~~Lr~~~~~~~FdP~~-~~~~~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~ 458 (537)
T PLN02223 380 GCGYVKKPDFLLNAGPSGVFYPTE-NPVVVKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVK 458 (537)
T ss_pred CCCceECChhhccCCcccccCCCC-CcccceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeC
Confidence 58889999887543 223321 12235789999999998751 1223457999999997632 234578888
Q ss_pred CCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCCCeeEEEEEeCccCCCCC
Q 009539 297 HKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEE 350 (532)
Q Consensus 297 ~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~iG~~~i~l~~l~~~~ 350 (532)
+|+.||+|||+|.|.+..++-..|+|+|+|+|..++|+++|++.+|+..|..+-
T Consensus 459 nNg~nPvWne~F~F~i~~PELAlLrf~V~D~D~~~~ddfiGQ~~LPv~~Lr~Gy 512 (537)
T PLN02223 459 NNEWKPTWGEEFTFPLTYPDLALISFEVYDYEVSTADAFCGQTCLPVSELIEGI 512 (537)
T ss_pred CCCcCceecceeEEEEEccCceEEEEEEEecCCCCCCcEEEEEecchHHhcCCc
Confidence 999999999999999999888889999999998888999999999999999885
No 198
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.34 E-value=1e-11 Score=101.87 Aligned_cols=97 Identities=42% Similarity=0.687 Sum_probs=83.3
Q ss_pred EEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCCC
Q 009539 255 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHD 334 (532)
Q Consensus 255 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~ 334 (532)
.|.|+|++|++|......+..+|||++++.+......+|+++.++.||.|||+|.|.+.....+.|.++|||.+..+.+.
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~ 80 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDD 80 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCc
Confidence 36899999999998876667899999999865323468999999999999999999998765789999999999877899
Q ss_pred eeEEEEEeCccCCCCCC
Q 009539 335 KMGMNVVPLKELTPEEP 351 (532)
Q Consensus 335 ~iG~~~i~l~~l~~~~~ 351 (532)
++|.+.+++.++..+..
T Consensus 81 ~~G~~~~~l~~~~~~~~ 97 (101)
T smart00239 81 FIGQVTIPLSDLLLGGR 97 (101)
T ss_pred eeEEEEEEHHHcccCcc
Confidence 99999999999876643
No 199
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=99.33 E-value=4.3e-12 Score=135.48 Aligned_cols=92 Identities=25% Similarity=0.437 Sum_probs=82.6
Q ss_pred eEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCC
Q 009539 253 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGK 332 (532)
Q Consensus 253 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~ 332 (532)
.-..+|.|++|-+|.+.|.+|++|||+++.+++... ..++..+.+|+||+|++.|.+....+....+.++|||+|..++
T Consensus 612 ~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~-~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~ 690 (1105)
T KOG1326|consen 612 KCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRT-LDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQ 690 (1105)
T ss_pred eeeEEEEEEEeeeccccCCCCCcCceeeeeeccchh-hhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecccc
Confidence 345779999999999999999999999999997653 3478889999999999999999888878899999999999999
Q ss_pred CCeeEEEEEeCcc
Q 009539 333 HDKMGMNVVPLKE 345 (532)
Q Consensus 333 d~~iG~~~i~l~~ 345 (532)
|+.+|+..++|+.
T Consensus 691 d~~iget~iDLEn 703 (1105)
T KOG1326|consen 691 DEKIGETTIDLEN 703 (1105)
T ss_pred cchhhceehhhhh
Confidence 9999999999864
No 200
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=7.5e-12 Score=127.38 Aligned_cols=124 Identities=26% Similarity=0.446 Sum_probs=98.3
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEcc
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWE 328 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d 328 (532)
..+-...++++|+.|.+|..+|..|++||||...++..+ +||+++...+||+|||.|+|..++. ++.+++.|||+|
T Consensus 290 sskwsakitltvlcaqgl~akdktg~sdpyvt~qv~ktk---rrtrti~~~lnpvw~ekfhfechns-tdrikvrvwded 365 (1283)
T KOG1011|consen 290 SSKWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTK---RRTRTIHQELNPVWNEKFHFECHNS-TDRIKVRVWDED 365 (1283)
T ss_pred ccccceeeEEeeeecccceecccCCCCCCcEEEeecccc---hhhHhhhhccchhhhhheeeeecCC-CceeEEEEecCc
Confidence 344567899999999999999999999999999998655 4899999999999999999999875 689999999998
Q ss_pred CC-----------CCCCeeEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEE
Q 009539 329 QV-----------GKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK 383 (532)
Q Consensus 329 ~~-----------~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~ 383 (532)
.. ..|||+|+..|.+..|...- +.|+.|-+..+ .+...|-|++.+...
T Consensus 366 ~dlksklrqkl~resddflgqtvievrtlsgem--dvwynlekrtd-----ksavsgairlhisve 424 (1283)
T KOG1011|consen 366 NDLKSKLRQKLTRESDDFLGQTVIEVRTLSGEM--DVWYNLEKRTD-----KSAVSGAIRLHISVE 424 (1283)
T ss_pred ccHHHHHHHHhhhcccccccceeEEEEecccch--hhhcchhhccc-----hhhccceEEEEEEEE
Confidence 42 35899999999999887653 44555433221 245677666655443
No 201
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.28 E-value=3e-11 Score=98.82 Aligned_cols=100 Identities=41% Similarity=0.628 Sum_probs=84.1
Q ss_pred EEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCCCe
Q 009539 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDK 335 (532)
Q Consensus 256 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~ 335 (532)
|.|+|++|++|......+..+|||.+.+.+. ...+|.++.++.||.|||.|.|.+.......+.++||+.+..+.+++
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~--~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 78 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGK--QKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDF 78 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccC--ceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCce
Confidence 5789999999988766778999999999872 23589999999999999999999976456889999999998877899
Q ss_pred eEEEEEeCccCC-CCCCeEEEEe
Q 009539 336 MGMNVVPLKELT-PEEPSVKTLD 357 (532)
Q Consensus 336 iG~~~i~l~~l~-~~~~~~~~l~ 357 (532)
+|.+.+++.++. .......|++
T Consensus 79 ig~~~~~l~~l~~~~~~~~~~~~ 101 (102)
T cd00030 79 LGEVEIPLSELLDSGKEGELWLP 101 (102)
T ss_pred eEEEEEeHHHhhhcCCcCcceec
Confidence 999999999998 4444445543
No 202
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.27 E-value=1.4e-11 Score=98.10 Aligned_cols=79 Identities=34% Similarity=0.632 Sum_probs=69.0
Q ss_pred EEEEEeeeecCCC---CCCCCCEEEEEEcC---eeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCC
Q 009539 414 LVVIVHEAQDVEG---KHHTNPYARILFRG---EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL 487 (532)
Q Consensus 414 L~v~i~~a~~L~~---~~~~dpyv~v~~~~---~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~ 487 (532)
|+|+|++|+||+. .+..||||++++++ ..++|++++++.+|.|+|.|.|.+..+ ..+.|.|+|||++. +
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~-~~~~l~~~V~~~~~----~ 75 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDP-DLDSLSFEVWDKDS----F 75 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHG-CGTEEEEEEEEETS----S
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecc-cccceEEEEEECCC----C
Confidence 6899999999987 35899999999988 668999999999999999999998765 34569999999986 4
Q ss_pred CCCceeEEEE
Q 009539 488 HPKETLGYID 497 (532)
Q Consensus 488 ~~d~~lG~~~ 497 (532)
+.|++||++.
T Consensus 76 ~~~~~iG~~~ 85 (85)
T PF00168_consen 76 GKDELIGEVK 85 (85)
T ss_dssp SSEEEEEEEE
T ss_pred CCCCEEEEEC
Confidence 6699999874
No 203
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=7.7e-12 Score=127.30 Aligned_cols=120 Identities=21% Similarity=0.400 Sum_probs=98.5
Q ss_pred CCCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEEcCeeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcc
Q 009539 405 ENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVS 481 (532)
Q Consensus 405 ~~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~ 481 (532)
++...-++.+++++.+|++|..+ |++||||.+.++..+++|+++....||+|||.|.|.+++. .+.|.++|||++
T Consensus 288 egsskwsakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechns--tdrikvrvwded 365 (1283)
T KOG1011|consen 288 EGSSKWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNS--TDRIKVRVWDED 365 (1283)
T ss_pred ccccccceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCC--CceeEEEEecCc
Confidence 34455678999999999999763 7899999999999999999999999999999999999984 568999999997
Q ss_pred ccc-cC------CCCCceeEEEEEechhhhccceeceEEEeCCC-----CCeEEEEEEE
Q 009539 482 SRI-GL------LHPKETLGYIDINLSDVVSNKRINEKYHLIDS-----KNGRIQIELQ 528 (532)
Q Consensus 482 ~~~-~~------~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~-----~~G~i~l~~~ 528 (532)
.+. +- -.+|++||+..|....+ .+.++-||.|+.. -+|.|++.+.
T Consensus 366 ~dlksklrqkl~resddflgqtvievrtl--sgemdvwynlekrtdksavsgairlhis 422 (1283)
T KOG1011|consen 366 NDLKSKLRQKLTRESDDFLGQTVIEVRTL--SGEMDVWYNLEKRTDKSAVSGAIRLHIS 422 (1283)
T ss_pred ccHHHHHHHHhhhcccccccceeEEEEec--ccchhhhcchhhccchhhccceEEEEEE
Confidence 530 00 13689999999998876 3467899999753 2688887765
No 204
>PLN02952 phosphoinositide phospholipase C
Probab=99.23 E-value=2.4e-10 Score=120.77 Aligned_cols=128 Identities=27% Similarity=0.379 Sum_probs=97.3
Q ss_pred ccceeeeCCccccc-----CCCCCccCCCCeEEEEEEEEEcCCCCcC------CCCCCCCcEEEEEEeCCc--CCceeeE
Q 009539 228 VANMYLWPKTLEVP-----ILDPSKAYRRPVGILHVKVVKAMNLKKK------DLLGASDPYVKLKITEDK--LPSKKTT 294 (532)
Q Consensus 228 ~~~~~v~P~~~~~~-----l~~~~~~~~~~~g~L~V~v~~A~~L~~~------d~~g~~dpyv~v~~~~~~--~~~~~T~ 294 (532)
-+++++.|..|... ..++... ......|.|+|+.|.+++.. +.....||||++.+-|-. ...++|+
T Consensus 440 ~cGYVlKP~~lr~~~~~~~~fdp~~~-~~~~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTk 518 (599)
T PLN02952 440 GCGYLKKPDFLMKKGFHDEVFDPKKK-LPVKKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTK 518 (599)
T ss_pred CCCceECCHHHcccCCcccccCCCCC-CCccceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeee
Confidence 47888899877431 2222221 12356899999999987531 112345999999997632 2346899
Q ss_pred eeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCCCeeEEEEEeCccCCCCCCeEEEEecc
Q 009539 295 VKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL 359 (532)
Q Consensus 295 v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~ 359 (532)
++.++.||+|||+|.|.+..++-..++|+|||+|..+.++++|++.+|+..|..+-. +++|.
T Consensus 519 vi~nN~nPvWnE~F~F~i~~PELAllrf~V~D~D~~~~ddfiGq~~lPv~~Lr~GyR---~VpL~ 580 (599)
T PLN02952 519 IIEDNWYPAWNEEFSFPLTVPELALLRIEVREYDMSEKDDFGGQTCLPVSELRPGIR---SVPLH 580 (599)
T ss_pred eccCCCCcccCCeeEEEEEcCCccEEEEEEEecCCCCCCCeEEEEEcchhHhcCCce---eEeCc
Confidence 999999999999999999888777899999999988889999999999999998853 55653
No 205
>PLN02270 phospholipase D alpha
Probab=99.20 E-value=1.6e-10 Score=124.29 Aligned_cols=128 Identities=18% Similarity=0.337 Sum_probs=104.8
Q ss_pred eEEEEEEEEEcCCCCcCC------------------CCCCCCcEEEEEEeCCcCCceeeEeeCCC-CCceeecEEEEEee
Q 009539 253 VGILHVKVVKAMNLKKKD------------------LLGASDPYVKLKITEDKLPSKKTTVKHKN-LNPEWNEEYNFTVR 313 (532)
Q Consensus 253 ~g~L~V~v~~A~~L~~~d------------------~~g~~dpyv~v~~~~~~~~~~~T~v~~~t-~nP~Wne~f~f~v~ 313 (532)
-|.|.|+|.+|++|++.+ ..+.+||||.+.+++.++ .||+++.+. .||+|||+|.+.+.
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v--~rtr~~~~~~~~p~w~e~f~i~~a 84 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARV--GRTRKIENEPKNPRWYESFHIYCA 84 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEE--EEEeecCCCCCCCccccceEEeec
Confidence 589999999999998631 125679999999997664 699999885 69999999999998
Q ss_pred CCCCCEEEEEEEEccCCCCCCeeEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEEccCC
Q 009539 314 DPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEE 388 (532)
Q Consensus 314 ~~~~~~L~v~v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~ 388 (532)
.. ...+.|.|.|.|.++ ..+||.+.+|.+++..++..+.|+++.... .+..+...+|+++++|.|...+
T Consensus 85 h~-~~~v~f~vkd~~~~g-~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~----~~p~~~~~~~~~~~~f~~~~~~ 153 (808)
T PLN02270 85 HM-ASNIIFTVKDDNPIG-ATLIGRAYIPVEEILDGEEVDRWVEILDND----KNPIHGGSKIHVKLQYFEVTKD 153 (808)
T ss_pred cC-cceEEEEEecCCccC-ceEEEEEEEEHHHhcCCCccccEEeccCCC----CCcCCCCCEEEEEEEEEEcccC
Confidence 76 478999999999876 559999999999999998889999986531 1112334599999999997664
No 206
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.19 E-value=3.5e-10 Score=119.28 Aligned_cols=123 Identities=22% Similarity=0.266 Sum_probs=95.8
Q ss_pred ccceeeeCCcccccC-----CCCCccCCCCeEEEEEEEEEcCCCCcC------CCCCCCCcEEEEEEeCCc--CCceeeE
Q 009539 228 VANMYLWPKTLEVPI-----LDPSKAYRRPVGILHVKVVKAMNLKKK------DLLGASDPYVKLKITEDK--LPSKKTT 294 (532)
Q Consensus 228 ~~~~~v~P~~~~~~l-----~~~~~~~~~~~g~L~V~v~~A~~L~~~------d~~g~~dpyv~v~~~~~~--~~~~~T~ 294 (532)
-+++++.|..|..+- +++.. ...+..+|.|+|+.+.+++.. +.....||||+|.+-|-. ...++|+
T Consensus 439 ~CGYVLKP~~Lr~~~~~~~~fdP~~-~~~~~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~ 517 (598)
T PLN02230 439 GCGYVKKPDFLMDAGPNGQDFYPKD-NSCPKKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTK 517 (598)
T ss_pred CCCceECCHHhcCCCccccccCCCc-CCCcCcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCccccee
Confidence 478899998876531 22221 112457899999999987421 222346999999997632 2346899
Q ss_pred eeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCCCeeEEEEEeCccCCCCCC
Q 009539 295 VKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEP 351 (532)
Q Consensus 295 v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~iG~~~i~l~~l~~~~~ 351 (532)
+..++.||+|||+|.|.+..++-..|+|+|+|+|...+|+++|+..+|+..|..+-.
T Consensus 518 v~~n~~nP~Wneef~F~l~vPELAllRf~V~d~d~~~~ddfiGQ~~lPv~~Lr~GyR 574 (598)
T PLN02230 518 IEYDTWTPIWNKEFIFPLAVPELALLRVEVHEHDINEKDDFGGQTCLPVSEIRQGIH 574 (598)
T ss_pred ccCCCCCCccCCeeEEEEEcCceeEEEEEEEECCCCCCCCEEEEEEcchHHhhCccc
Confidence 999999999999999999988888999999999988899999999999999998843
No 207
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=99.17 E-value=1.9e-10 Score=121.00 Aligned_cols=167 Identities=25% Similarity=0.334 Sum_probs=116.9
Q ss_pred CCCCCCCeeeEEEEEccCC-ceEEEEEEEccccccCCchhhhhhh--------ccceeeeCCccccc--CCCCCcc-CCC
Q 009539 184 PLVPAFPCFANIYVSLMEK-PHVDFGLKLVGADLMSIPGLYRFVQ--------VANMYLWPKTLEVP--ILDPSKA-YRR 251 (532)
Q Consensus 184 pl~~~~P~~~~v~~sf~~~-P~id~~~~~~g~~~~~~P~l~~~i~--------~~~~~v~P~~~~~~--l~~~~~~-~~~ 251 (532)
-|+..+|.--.++-|=.++ +-..-++..+ +=-+.-||..-+++ -|+++..|..+..+ .+++... ...
T Consensus 536 ~L~RvYP~~~R~dSSNynPq~~W~~G~QmV-AlN~Qt~G~~l~L~~G~Fr~NGgCGYVlKP~~L~~~~~~F~P~~~~~~~ 614 (746)
T KOG0169|consen 536 NLLRVYPKGLRVDSSNYNPQEFWNHGCQMV-ALNFQTPGRMLDLNQGMFRANGGCGYVLKPDFLLDSGSTFDPKSNLPPV 614 (746)
T ss_pred heeeecCCccccCCCCCChHHHHhcCceEE-EEecCCCChhhhhhhhhhccCCCccceECcHHHcCCCCccCCCCCCCCC
Confidence 3555566655555553332 2223333332 11233566666665 58899999987763 2344222 222
Q ss_pred CeEEEEEEEEEcCCCCcCCC----CCCCCcEEEEEEeCCc--CCceeeE-eeCCCCCceeecEEEEEeeCCCCCEEEEEE
Q 009539 252 PVGILHVKVVKAMNLKKKDL----LGASDPYVKLKITEDK--LPSKKTT-VKHKNLNPEWNEEYNFTVRDPESQAVELAV 324 (532)
Q Consensus 252 ~~g~L~V~v~~A~~L~~~d~----~g~~dpyv~v~~~~~~--~~~~~T~-v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v 324 (532)
.. +|.|+|+.+.+++..-. ...+||||.+++.|-. ....+|+ +..|+-||.|+|+|+|.+..|+-..|+|.|
T Consensus 615 ~~-tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V 693 (746)
T KOG0169|consen 615 KK-TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEV 693 (746)
T ss_pred Cc-eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEE
Confidence 33 89999999997654322 2357999999987633 2245788 677999999999999999999889999999
Q ss_pred EEccCCCCCCeeEEEEEeCccCCCCCCe
Q 009539 325 YDWEQVGKHDKMGMNVVPLKELTPEEPS 352 (532)
Q Consensus 325 ~d~d~~~~d~~iG~~~i~l~~l~~~~~~ 352 (532)
+|+|..++|+|+|+..+|+.+|..|-.+
T Consensus 694 ~d~d~~~~ddF~GQ~tlP~~~L~~GyRh 721 (746)
T KOG0169|consen 694 HDYDYIGKDDFIGQTTLPVSELRQGYRH 721 (746)
T ss_pred EecCCCCcccccceeeccHHHhhCceee
Confidence 9999999999999999999999988543
No 208
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.14 E-value=5.2e-10 Score=91.37 Aligned_cols=97 Identities=33% Similarity=0.542 Sum_probs=81.9
Q ss_pred EEEEEeeeecCCC---CCCCCCEEEEEEcC-eeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCCCC
Q 009539 414 LVVIVHEAQDVEG---KHHTNPYARILFRG-EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP 489 (532)
Q Consensus 414 L~v~i~~a~~L~~---~~~~dpyv~v~~~~-~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~~ 489 (532)
|.|.|++|++|+. .+.++|||.+++.+ ...+|+++.++.||.|++.|.|.+... ....+.++|++.+. ...
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~-~~~~l~i~v~~~~~----~~~ 75 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDP-ESDTLTVEVWDKDR----FSK 75 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCC-CCCEEEEEEEecCC----CCC
Confidence 4689999999975 35799999999998 778999999999999999999999863 34689999999975 346
Q ss_pred CceeEEEEEechhhh-ccceeceEEEe
Q 009539 490 KETLGYIDINLSDVV-SNKRINEKYHL 515 (532)
Q Consensus 490 d~~lG~~~i~L~~l~-~~~~~~~~~~L 515 (532)
+.++|++.+++.++. .......|++|
T Consensus 76 ~~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 76 DDFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred CceeEEEEEeHHHhhhcCCcCcceecC
Confidence 899999999999998 55555677764
No 209
>PLN02270 phospholipase D alpha
Probab=99.14 E-value=5.3e-10 Score=120.28 Aligned_cols=115 Identities=17% Similarity=0.382 Sum_probs=97.4
Q ss_pred ceEEEEEEeeeecCCC---------------------CCCCCCEEEEEEcCeeE-EEeeecCC-CCCcccceEEEEecCC
Q 009539 411 GGLLVVIVHEAQDVEG---------------------KHHTNPYARILFRGEER-KTKHVKKN-RDPRWEEEFQFMLEEP 467 (532)
Q Consensus 411 ~g~L~v~i~~a~~L~~---------------------~~~~dpyv~v~~~~~~~-kT~vv~~t-~nP~w~e~f~f~v~~~ 467 (532)
-|.|.++|.+|++|+. ++.+||||.|.+++.+. ||+++.+. .||.|+|.|..+|...
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~ 86 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM 86 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence 4778888999988863 13679999999998876 99999885 6999999999999864
Q ss_pred CCCCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCCC------CeEEEEEEEEEeC
Q 009539 468 PTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK------NGRIQIELQWRTA 532 (532)
Q Consensus 468 ~~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~------~G~i~l~~~w~p~ 532 (532)
...+.+.|.|.+- + +..+||.+.|+..+++.++.++.||++.+.. +.+|+++++|.|+
T Consensus 87 --~~~v~f~vkd~~~----~-g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~ 150 (808)
T PLN02270 87 --ASNIIFTVKDDNP----I-GATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEV 150 (808)
T ss_pred --cceEEEEEecCCc----c-CceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEc
Confidence 3689999999874 3 4669999999999999998999999997642 4699999999985
No 210
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=99.14 E-value=3.7e-11 Score=128.46 Aligned_cols=89 Identities=21% Similarity=0.315 Sum_probs=77.6
Q ss_pred ceEEEEEEeeeecCCC---CCCCCCEEEEEEcCeeE--EEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccccc
Q 009539 411 GGLLVVIVHEAQDVEG---KHHTNPYARILFRGEER--KTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIG 485 (532)
Q Consensus 411 ~g~L~v~i~~a~~L~~---~~~~dpyv~v~~~~~~~--kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~ 485 (532)
.-.++|++.+|-+|.. +|.+|||+++.++++.. ++..+.+|.||+|++.|++.+..+ ....++++|+|+|.
T Consensus 612 ~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp-~ek~l~v~vyd~D~--- 687 (1105)
T KOG1326|consen 612 KCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLP-FEKDLIVEVYDHDL--- 687 (1105)
T ss_pred eeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccc-hhhcceeEEEEeec---
Confidence 4467899999999975 47899999999999874 888899999999999999999875 66789999999986
Q ss_pred CCCCCceeEEEEEechhhh
Q 009539 486 LLHPKETLGYIDINLSDVV 504 (532)
Q Consensus 486 ~~~~d~~lG~~~i~L~~l~ 504 (532)
++.|+.+|+.+++|++-.
T Consensus 688 -~~~d~~iget~iDLEnR~ 705 (1105)
T KOG1326|consen 688 -EAQDEKIGETTIDLENRW 705 (1105)
T ss_pred -ccccchhhceehhhhhcc
Confidence 678999999999998643
No 211
>PLN02222 phosphoinositide phospholipase C 2
Probab=99.13 E-value=1.3e-09 Score=114.86 Aligned_cols=123 Identities=22% Similarity=0.262 Sum_probs=94.4
Q ss_pred ccceeeeCCcccccCC-----CCCccCCCCeEEEEEEEEEcCCCC----cCC--CCCCCCcEEEEEEeCCc--CCceeeE
Q 009539 228 VANMYLWPKTLEVPIL-----DPSKAYRRPVGILHVKVVKAMNLK----KKD--LLGASDPYVKLKITEDK--LPSKKTT 294 (532)
Q Consensus 228 ~~~~~v~P~~~~~~l~-----~~~~~~~~~~g~L~V~v~~A~~L~----~~d--~~g~~dpyv~v~~~~~~--~~~~~T~ 294 (532)
-+++++.|..|..+-. ++... ......|.|+|+.+.+++ ... .....||||+|.+.|-. ..+++|+
T Consensus 422 ~cGYVLKP~~lr~~~~~~~~fdp~~~-~~~~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk 500 (581)
T PLN02222 422 GCGYIKKPDLLLKSGSDSDIFDPKAT-LPVKTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTK 500 (581)
T ss_pred CCceEECCHHhccCCccccccCCCCC-CCccceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeE
Confidence 4788999988764422 22111 122468999999998753 211 22356999999997532 2346899
Q ss_pred eeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCCCeeEEEEEeCccCCCCCC
Q 009539 295 VKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEP 351 (532)
Q Consensus 295 v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~iG~~~i~l~~l~~~~~ 351 (532)
++.++.||+|||+|.|.+..++-..|+|+|+|+|..+.|+++|++.+|+..|..|-.
T Consensus 501 ~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~d~D~~~~ddfigq~~lPv~~Lr~GyR 557 (581)
T PLN02222 501 TLEDNWIPAWDEVFEFPLTVPELALLRLEVHEYDMSEKDDFGGQTCLPVWELSQGIR 557 (581)
T ss_pred ecCCCCCcccCCeeEEEEEcCceeEEEEEEEECCCCCCCcEEEEEEcchhhhhCccc
Confidence 999999999999999999888778999999999988889999999999999998843
No 212
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.12 E-value=2.8e-10 Score=97.67 Aligned_cols=90 Identities=23% Similarity=0.379 Sum_probs=75.5
Q ss_pred EEEEEeeeecCCC-----CC--CCCCEEEEEEcC---eeEEEeeecCCCC--CcccceEEEEecCCCC------------
Q 009539 414 LVVIVHEAQDVEG-----KH--HTNPYARILFRG---EERKTKHVKKNRD--PRWEEEFQFMLEEPPT------------ 469 (532)
Q Consensus 414 L~v~i~~a~~L~~-----~~--~~dpyv~v~~~~---~~~kT~vv~~t~n--P~w~e~f~f~v~~~~~------------ 469 (532)
|+|.|.+|+|++. .| .+||||++.+.+ ++++|.+.+++.| |.||+.|.|++..++.
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 7899999999653 23 499999999976 3569999999999 9999999999876322
Q ss_pred ----------CCeEEEEEEEccccccCCCCCceeEEEEEechhhhccc
Q 009539 470 ----------NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNK 507 (532)
Q Consensus 470 ----------~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~ 507 (532)
...+.++|||.|. ++.|++||+++++|+.+....
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~----~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDK----FSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccCcceEecCcEEEEEEEECcc----cCCCCcceEEEEEhhhccccc
Confidence 2479999999986 789999999999999987754
No 213
>PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1. These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria [].
Probab=99.11 E-value=4.8e-10 Score=90.36 Aligned_cols=85 Identities=19% Similarity=0.367 Sum_probs=73.1
Q ss_pred HHHHHhhch-hHH-HHHHHHHHHHHHHHHHh-cCCCceeeeEEEeEeeCCCCCCeEeeEEEEecCC-ceEEEEeeeeEeC
Q 009539 75 NKFLELMWP-YLD-KAICKTAKNIAKPIIAE-QIPKYKIESVEFETLTLGTLPPTFQGMKVYVTDE-KELIMEPCLKWAA 150 (532)
Q Consensus 75 N~~l~~~Wp-~~~-~~~~~~i~~~~~~~l~~-~~p~~~i~~~~~~~~~lG~~~p~i~~v~~~~~~~-~~~~ld~~~~~~~ 150 (532)
|.++.|++- +.+ +.+.+.+++.++..|++ .+|+| +++|++++++||+.||.|+++|+.+.++ +++.+|+|+.|.|
T Consensus 1 N~ll~R~f~~~~~t~~~~~~i~~~L~~kL~~i~~P~f-l~~i~v~~~~lG~~~P~i~~~~~~~~~~~g~~~~~~dv~Y~G 79 (91)
T PF10296_consen 1 NALLGRLFFDFRRTEAFRDKIKEKLQKKLNKIKLPSF-LDEISVTELDLGDSPPIISNVRIPDLDPDGELWIEFDVSYSG 79 (91)
T ss_pred ChHHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCCc-cCcEEEEEEECCCCCCEEEeccccccCCCCCEEEEEEEEEcC
Confidence 667777554 443 78899999999999998 68998 9999999999999999999999987544 4599999999999
Q ss_pred CCceEEEEEE
Q 009539 151 NPNVTIGVKA 160 (532)
Q Consensus 151 ~~~i~l~~~~ 160 (532)
+..+.++.++
T Consensus 80 ~~~l~l~t~l 89 (91)
T PF10296_consen 80 GFSLTLETKL 89 (91)
T ss_pred CeEEEEEEEE
Confidence 9999888764
No 214
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.09 E-value=1e-09 Score=89.81 Aligned_cols=89 Identities=29% Similarity=0.562 Sum_probs=76.8
Q ss_pred EEEEEeeeecCCCC---CCCCCEEEEEEcCe---eEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCC
Q 009539 414 LVVIVHEAQDVEGK---HHTNPYARILFRGE---ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL 487 (532)
Q Consensus 414 L~v~i~~a~~L~~~---~~~dpyv~v~~~~~---~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~ 487 (532)
+.+.|++|++|... +..+|||++++.+. ..+|+++.++.||.|||.|.|.+.... ...|.++|||++. .
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~-~~~l~i~v~~~~~----~ 76 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPE-LAELEIEVYDKDR----F 76 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcc-cCEEEEEEEecCC----c
Confidence 67899999999874 36899999999875 689999999999999999999998753 6789999999985 3
Q ss_pred CCCceeEEEEEechhhhccc
Q 009539 488 HPKETLGYIDINLSDVVSNK 507 (532)
Q Consensus 488 ~~d~~lG~~~i~L~~l~~~~ 507 (532)
+.+..+|.+.+++.++..+.
T Consensus 77 ~~~~~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 77 GRDDFIGQVTIPLSDLLLGG 96 (101)
T ss_pred cCCceeEEEEEEHHHcccCc
Confidence 46899999999999987654
No 215
>PLN02228 Phosphoinositide phospholipase C
Probab=99.09 E-value=2.2e-09 Score=112.83 Aligned_cols=148 Identities=24% Similarity=0.321 Sum_probs=106.7
Q ss_pred ccceeeeCCcccccC--CCCCccCCCCeEEEEEEEEEcCCCCc---C---CCCCCCCcEEEEEEeCCc--CCceeeEeeC
Q 009539 228 VANMYLWPKTLEVPI--LDPSKAYRRPVGILHVKVVKAMNLKK---K---DLLGASDPYVKLKITEDK--LPSKKTTVKH 297 (532)
Q Consensus 228 ~~~~~v~P~~~~~~l--~~~~~~~~~~~g~L~V~v~~A~~L~~---~---d~~g~~dpyv~v~~~~~~--~~~~~T~v~~ 297 (532)
-+++++.|..|..+- .++.... .....|+|+|++|.+|+- . +.....||||++.+.|-. ...++|++++
T Consensus 404 ~cGYVLKP~~Lr~~~~~f~p~~~~-p~~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~ 482 (567)
T PLN02228 404 GCGYVKKPRILLDEHTLFDPCKRL-PIKTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAV 482 (567)
T ss_pred CCCceeCchhhcccccccCCccCC-CcCceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccC
Confidence 468888998776431 1222111 124579999999998731 1 112347999999997632 2346899999
Q ss_pred CCCCcee-ecEEEEEeeCCCCCEEEEEEEEccCCCCCCeeEEEEEeCccCCCCCCeEEEEecccccccCCCCCCc-cccE
Q 009539 298 KNLNPEW-NEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEK-SRGQ 375 (532)
Q Consensus 298 ~t~nP~W-ne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~-~~G~ 375 (532)
++.||+| ||+|.|.+..++-..|+|.|+|+|..+.|+++|++.+|+..|..|-. .++|... .+.. ...+
T Consensus 483 n~~nP~W~~e~f~F~~~~pELA~lRf~V~D~d~~~~d~figq~~lPv~~Lr~GYR---~VpL~~~------~G~~l~~at 553 (567)
T PLN02228 483 DQWFPIWGNDEFLFQLRVPELALLWFKVQDYDNDTQNDFAGQTCLPLPELKSGVR---AVRLHDR------AGKAYKNTR 553 (567)
T ss_pred CCCCceECCCeEEEEEEcCceeEEEEEEEeCCCCCCCCEEEEEEcchhHhhCCee---EEEccCC------CCCCCCCeE
Confidence 9999999 99999999888778999999999988889999999999999988743 2344221 1222 3457
Q ss_pred EEEEEEEEEc
Q 009539 376 LVVEFIYKPF 385 (532)
Q Consensus 376 l~l~l~~~p~ 385 (532)
|.+.+.+.+.
T Consensus 554 Lfv~~~~~~~ 563 (567)
T PLN02228 554 LLVSFALDPP 563 (567)
T ss_pred EEEEEEEcCc
Confidence 8888888764
No 216
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=99.02 E-value=1.8e-09 Score=112.96 Aligned_cols=152 Identities=23% Similarity=0.350 Sum_probs=113.7
Q ss_pred ccceeeeCCcccccCCCCCcc---CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCc---CCceeeEeeCCCCC
Q 009539 228 VANMYLWPKTLEVPILDPSKA---YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK---LPSKKTTVKHKNLN 301 (532)
Q Consensus 228 ~~~~~v~P~~~~~~l~~~~~~---~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~---~~~~~T~v~~~t~n 301 (532)
-+++++.|..|.-+-+|+... ...-.-.|.|.|+.|++|+... .|...|||++.+.|.. ...++|.+..|++|
T Consensus 1036 rcGYvLqPs~Mrte~fdP~n~e~~~~l~p~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGln 1114 (1267)
T KOG1264|consen 1036 RCGYVLQPSSMRTEKFDPMNPESQRGLLPMTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLN 1114 (1267)
T ss_pred ceeeEecchhcccccCCCCChHHhccccceEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCC
Confidence 578899999988777665442 1222346899999999999554 3667899999997643 22356777889999
Q ss_pred ceee-cEEEEEeeCCCCCEEEEEEEEccCCCCCCeeEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEE
Q 009539 302 PEWN-EEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEF 380 (532)
Q Consensus 302 P~Wn-e~f~f~v~~~~~~~L~v~v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l 380 (532)
|+|| |+|+|.+.+|+-..|++.|||.|.++...|||++.+|+..+..+-. ..+|.... ...-....|.+.+
T Consensus 1115 PiWn~e~ftFeI~nPe~A~lRF~V~eeDmfs~~~FiaqA~yPv~~ik~GfR---sVpLkN~y-----SEdlELaSLLv~i 1186 (1267)
T KOG1264|consen 1115 PIWNPEKFTFEIYNPEFAFLRFVVYEEDMFSDPNFLAQATYPVKAIKSGFR---SVPLKNGY-----SEDLELASLLVFI 1186 (1267)
T ss_pred CCCCCcceEEEeeCCceEEEEEEEecccccCCcceeeeeecchhhhhccce---eeecccCc-----hhhhhhhhheeee
Confidence 9999 9999999999989999999999999988999999999999987631 12221110 0122455677788
Q ss_pred EEEEccCC
Q 009539 381 IYKPFKEE 388 (532)
Q Consensus 381 ~~~p~~~~ 388 (532)
...|..+.
T Consensus 1187 ~m~~~~~~ 1194 (1267)
T KOG1264|consen 1187 EMRPVLES 1194 (1267)
T ss_pred EeccccCc
Confidence 88876554
No 217
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.98 E-value=1.6e-09 Score=112.38 Aligned_cols=113 Identities=23% Similarity=0.298 Sum_probs=98.4
Q ss_pred EEEEEEeeeecCCCC---CCCCCEEEEEEcCee-EEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCCC
Q 009539 413 LLVVIVHEAQDVEGK---HHTNPYARILFRGEE-RKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLH 488 (532)
Q Consensus 413 ~L~v~i~~a~~L~~~---~~~dpyv~v~~~~~~-~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~ 488 (532)
-|.|.|.+|+||+.. |..||||.|.+.... .+|.++.+++.|-|.|.|.|.++.. -..+.+-|||+| ++
T Consensus 6 sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~--F~~l~fYv~D~d-----~~ 78 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRT--FRYLSFYVWDRD-----LK 78 (800)
T ss_pred ceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcc--eeeEEEEEeccc-----cc
Confidence 478999999999974 689999999998876 4999999999999999999999753 357999999997 57
Q ss_pred CCceeEEEEEechhhhccceeceEEEeCCC-----CCeEEEEEEEEEeC
Q 009539 489 PKETLGYIDINLSDVVSNKRINEKYHLIDS-----KNGRIQIELQWRTA 532 (532)
Q Consensus 489 ~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~-----~~G~i~l~~~w~p~ 532 (532)
+|+.||.+.|.=.++......+.||.|... -+|+|++++++.++
T Consensus 79 ~D~~IGKvai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~ 127 (800)
T KOG2059|consen 79 RDDIIGKVAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTEA 127 (800)
T ss_pred cccccceeeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEeccc
Confidence 999999999999999887788999999643 27999999998653
No 218
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.93 E-value=2.9e-10 Score=117.52 Aligned_cols=132 Identities=27% Similarity=0.503 Sum_probs=104.5
Q ss_pred cCCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCc-------------------------C---CceeeEeeCCC
Q 009539 248 AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK-------------------------L---PSKKTTVKHKN 299 (532)
Q Consensus 248 ~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~-------------------------~---~~~~T~v~~~t 299 (532)
....|.-.+.|.+.+|+||.++|.+|-||||+...+.+.. . ..+-|++++.|
T Consensus 108 ~~k~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~T 187 (1103)
T KOG1328|consen 108 QNKPPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKT 187 (1103)
T ss_pred CCCCCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhccccccc
Confidence 4455667788999999999999999999999999873210 0 02368899999
Q ss_pred CCceeecEEEEEeeCCCCCEEEEEEEEccCC---------------------------------C---CCCeeEEEEEeC
Q 009539 300 LNPEWNEEYNFTVRDPESQAVELAVYDWEQV---------------------------------G---KHDKMGMNVVPL 343 (532)
Q Consensus 300 ~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~---------------------------------~---~d~~iG~~~i~l 343 (532)
+||+|+|.|.|.+.+..++.+.+.+||+|.- + .|||+|.+.+|+
T Consensus 188 LnPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl 267 (1103)
T KOG1328|consen 188 LNPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPL 267 (1103)
T ss_pred CCcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccch
Confidence 9999999999999998899999999998732 2 289999999999
Q ss_pred ccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEEc
Q 009539 344 KELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPF 385 (532)
Q Consensus 344 ~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~ 385 (532)
.++... +.+.|+.|-+.. ..++..|.+++.+...-.
T Consensus 268 ~EiP~~-Gld~WFkLepRS-----~~S~VqG~~~LklwLsT~ 303 (1103)
T KOG1328|consen 268 AEIPPD-GLDQWFKLEPRS-----DKSKVQGQVKLKLWLSTK 303 (1103)
T ss_pred hcCCcc-hHHHHhccCccc-----ccccccceEEEEEEEeee
Confidence 999865 455666664322 236789999999977654
No 219
>PLN02223 phosphoinositide phospholipase C
Probab=98.90 E-value=2.2e-08 Score=103.80 Aligned_cols=112 Identities=21% Similarity=0.274 Sum_probs=87.4
Q ss_pred CceEEEEEEeeeecCCC--------CCCCCCEEEEEEcCe-----eEEEeeecCCCCCcccceEEEEecCCCCCCeEEEE
Q 009539 410 GGGLLVVIVHEAQDVEG--------KHHTNPYARILFRGE-----ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVE 476 (532)
Q Consensus 410 ~~g~L~v~i~~a~~L~~--------~~~~dpyv~v~~~~~-----~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~ 476 (532)
....|.|+|+.|++++. ...+||||+|.+.|- .++|.+..++.||+|||+|+|.+..+ .-..+.++
T Consensus 407 ~~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~P-ELAlLrf~ 485 (537)
T PLN02223 407 VVKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYP-DLALISFE 485 (537)
T ss_pred cceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEcc-CceEEEEE
Confidence 35689999999998741 135799999999662 45787777899999999999999886 34579999
Q ss_pred EEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCCC-----CeEEEEEEEE
Q 009539 477 VCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK-----NGRIQIELQW 529 (532)
Q Consensus 477 V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~-----~G~i~l~~~w 529 (532)
|+|+|. .+.++++|+..+|++.+..+- +..+|.+.. .-++.++++|
T Consensus 486 V~D~D~----~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~g~~l~~~~Ll~~f~~ 536 (537)
T PLN02223 486 VYDYEV----STADAFCGQTCLPVSELIEGI---RAVPLYDERGKACSSTMLLTRFKW 536 (537)
T ss_pred EEecCC----CCCCcEEEEEecchHHhcCCc---eeEeccCCCcCCCCCceEEEEEEe
Confidence 999985 357899999999999987643 566776542 3567777776
No 220
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.90 E-value=3.5e-09 Score=85.23 Aligned_cols=86 Identities=21% Similarity=0.416 Sum_probs=71.3
Q ss_pred EEEEEEEcCCCCcCC---CCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCC
Q 009539 256 LHVKVVKAMNLKKKD---LLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGK 332 (532)
Q Consensus 256 L~V~v~~A~~L~~~d---~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~ 332 (532)
|.|+|..|+|+...+ ..+.+||||.+.+++.. +.||++ +.||.|||+|.|.+. ....+.+.|||.. ...
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~--kaRTr~---srnd~WnE~F~i~Vd--k~nEiel~VyDk~-~~~ 72 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVE--RARTKP---SRNDRWNEDFEIPVE--KNNEEEVIVYDKG-GDQ 72 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEE--EEeccC---CCCCcccceEEEEec--CCcEEEEEEEeCC-CCe
Confidence 679999999999887 56889999999999764 247765 589999999999994 3689999999985 345
Q ss_pred CCeeEEEEEeCccCCCC
Q 009539 333 HDKMGMNVVPLKELTPE 349 (532)
Q Consensus 333 d~~iG~~~i~l~~l~~~ 349 (532)
.-.+|...+.++++.+.
T Consensus 73 ~~Pi~llW~~~sdi~Ee 89 (109)
T cd08689 73 PVPVGLLWLRLSDIAEE 89 (109)
T ss_pred ecceeeehhhHHHHHHH
Confidence 66899999999888653
No 221
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=98.83 E-value=5.4e-08 Score=100.06 Aligned_cols=178 Identities=20% Similarity=0.332 Sum_probs=128.0
Q ss_pred eeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccC----CCCCCeeEEEEEeCccCCCCCCeEEEEecccccccCC
Q 009539 291 KKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQ----VGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLND 366 (532)
Q Consensus 291 ~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~----~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~ 366 (532)
.+|.++.+.+||.|-+.|.+.......|.++++++|-+. ...++++|++...+.++.........+.+.+
T Consensus 43 ~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~------ 116 (529)
T KOG1327|consen 43 GRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKP------ 116 (529)
T ss_pred cceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhccc------
Confidence 489999999999999999888776678999999999774 3567899999999999876543322222211
Q ss_pred CCCCccccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEEc--C-
Q 009539 367 GQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFR--G- 440 (532)
Q Consensus 367 ~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~--~- 440 (532)
......|+|.+.+.-.. ..........+|++|..+ +++|||..++-. .
T Consensus 117 -~~~~~~g~iti~aee~~-------------------------~~~~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~ 170 (529)
T KOG1327|consen 117 -GKNAGSGTITISAEEDE-------------------------SDNDVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDG 170 (529)
T ss_pred -CccCCcccEEEEeeccc-------------------------ccCceeeeeeeeeecCcccccccCCcceEEEEecCCC
Confidence 02346677777663221 011222334568888765 689999998753 2
Q ss_pred e---eEEEeeecCCCCCcccceEEEEecCCCC---CCeEEEEEEEccccccCCCCCceeEEEEEechhhhc
Q 009539 441 E---ERKTKHVKKNRDPRWEEEFQFMLEEPPT---NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVS 505 (532)
Q Consensus 441 ~---~~kT~vv~~t~nP~w~e~f~f~v~~~~~---~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~ 505 (532)
. .++|.+++++.+|.|.+ |.......+. +..+.+.+||++.+ +.++++|++..++.++..
T Consensus 171 s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~----~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 171 STQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSN----GKHDLIGKFQTTLSELQE 236 (529)
T ss_pred ceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCC----CCcCceeEecccHHHhcc
Confidence 2 24999999999999998 6665554332 35789999999864 567999999999999864
No 222
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.81 E-value=1.4e-09 Score=112.61 Aligned_cols=100 Identities=26% Similarity=0.447 Sum_probs=87.1
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCc----CCceeeEeeCCCCCceeecEEEEEeeCCC----CCEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK----LPSKKTTVKHKNLNPEWNEEYNFTVRDPE----SQAV 320 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~----~~~~~T~v~~~t~nP~Wne~f~f~v~~~~----~~~L 320 (532)
+..+...|.|.|+.|+++.+.|.+|.|||||++.+.+.. ....+|+|+.+|+||+|+|+|+|.|.... ...+
T Consensus 942 y~~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~ 1021 (1103)
T KOG1328|consen 942 YNGNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAML 1021 (1103)
T ss_pred eeccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceE
Confidence 455667888999999999999999999999999998754 34569999999999999999999997432 4579
Q ss_pred EEEEEEccCCCCCCeeEEEEEeCccCCC
Q 009539 321 ELAVYDWEQVGKHDKMGMNVVPLKELTP 348 (532)
Q Consensus 321 ~v~v~d~d~~~~d~~iG~~~i~l~~l~~ 348 (532)
.|+|+|+|-.+.+||-|++.+.|.++..
T Consensus 1022 ~FTVMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1022 HFTVMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred EEEeeccceecccccchHHHHhhCCCCC
Confidence 9999999999999999999999988864
No 223
>PLN02952 phosphoinositide phospholipase C
Probab=98.78 E-value=9.8e-08 Score=101.20 Aligned_cols=111 Identities=24% Similarity=0.314 Sum_probs=86.4
Q ss_pred ceEEEEEEeeeecCCC--C-------CCCCCEEEEEEcC-----eeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEE
Q 009539 411 GGLLVVIVHEAQDVEG--K-------HHTNPYARILFRG-----EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVE 476 (532)
Q Consensus 411 ~g~L~v~i~~a~~L~~--~-------~~~dpyv~v~~~~-----~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~ 476 (532)
...|.|+|+.|++++. . ...||||+|.+-| .+++|+++.++.||+|||+|+|.+..+ .-..+.|+
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~P-ELAllrf~ 547 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVP-ELALLRIE 547 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcC-CccEEEEE
Confidence 4689999999988742 1 1359999999865 356999999999999999999999875 34579999
Q ss_pred EEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCCC-----CeEEEEEEEE
Q 009539 477 VCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK-----NGRIQIELQW 529 (532)
Q Consensus 477 V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~-----~G~i~l~~~w 529 (532)
|+|+|. .+.++++|+..++++.+..+- ++.+|.+.. .-.+.+++.|
T Consensus 548 V~D~D~----~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~~G~~l~~a~Llv~f~~ 598 (599)
T PLN02952 548 VREYDM----SEKDDFGGQTCLPVSELRPGI---RSVPLHDKKGEKLKNVRLLMRFIF 598 (599)
T ss_pred EEecCC----CCCCCeEEEEEcchhHhcCCc---eeEeCcCCCCCCCCCEEEEEEEEe
Confidence 999875 457899999999999987654 588886542 3445555554
No 224
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.75 E-value=4.7e-08 Score=78.79 Aligned_cols=81 Identities=26% Similarity=0.479 Sum_probs=68.2
Q ss_pred EEEEEeeeecCCC------CCCCCCEEEEEEcCe-eEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccC
Q 009539 414 LVVIVHEAQDVEG------KHHTNPYARILFRGE-ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGL 486 (532)
Q Consensus 414 L~v~i~~a~~L~~------~~~~dpyv~v~~~~~-~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~ 486 (532)
|.|+|+.|+|+.. .+.++|||.+++++. +.||++ +.||.|||.|+|.+.. ...+.+.|||+..
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vdk---~nEiel~VyDk~~---- 70 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVEK---NNEEEVIVYDKGG---- 70 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEecC---CcEEEEEEEeCCC----
Confidence 5789999999964 357899999999987 568886 5899999999999953 4689999999964
Q ss_pred CCCCceeEEEEEechhhhc
Q 009539 487 LHPKETLGYIDINLSDVVS 505 (532)
Q Consensus 487 ~~~d~~lG~~~i~L~~l~~ 505 (532)
+..-.+|-.=+.++++.+
T Consensus 71 -~~~~Pi~llW~~~sdi~E 88 (109)
T cd08689 71 -DQPVPVGLLWLRLSDIAE 88 (109)
T ss_pred -CeecceeeehhhHHHHHH
Confidence 345689999999999986
No 225
>PLN02352 phospholipase D epsilon
Probab=98.67 E-value=1.4e-07 Score=101.60 Aligned_cols=121 Identities=17% Similarity=0.293 Sum_probs=92.5
Q ss_pred CeEEEEEEEEEcCCCCcC----CCC-CCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEE
Q 009539 252 PVGILHVKVVKAMNLKKK----DLL-GASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYD 326 (532)
Q Consensus 252 ~~g~L~V~v~~A~~L~~~----d~~-g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d 326 (532)
--|.|.++|.+|+-+... +.. ...||||.+.+++.++ .|| .+..||+|||+|.+.+.......+.|.|.|
T Consensus 8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v--~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~ 82 (758)
T PLN02352 8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKV--AKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT 82 (758)
T ss_pred cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEE--ecC---CCCCCCccccceeEEeeeecCCcEEEEEec
Confidence 358999999999843321 111 1239999999997664 477 566699999999999988754689999988
Q ss_pred ccCCCCCCeeEEEEEeCccCCCCCC-eEEEEecccccccCCCCCCccc-cEEEEEEEEEEccCC
Q 009539 327 WEQVGKHDKMGMNVVPLKELTPEEP-SVKTLDLLKNMDLNDGQNEKSR-GQLVVEFIYKPFKEE 388 (532)
Q Consensus 327 ~d~~~~d~~iG~~~i~l~~l~~~~~-~~~~l~l~~~~~~~~~~~~~~~-G~l~l~l~~~p~~~~ 388 (532)
...+||.+.+|++++..+.. .+.|+++.... ++... .+|+++++|.|...+
T Consensus 83 -----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~------~~p~~~~~~~~~~~~~~~~~~ 135 (758)
T PLN02352 83 -----KCSILGRFHIQAHQIVTEASFINGFFPLIMEN------GKPNPELKLRFMLWFRPAELE 135 (758)
T ss_pred -----CCeEEEEEEEEHHHhhCCCcccceEEEcccCC------CCCCCCCEEEEEEEEEEhhhC
Confidence 26799999999999998865 88899986531 11223 599999999998665
No 226
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.66 E-value=2.7e-07 Score=97.73 Aligned_cols=112 Identities=22% Similarity=0.243 Sum_probs=86.8
Q ss_pred CceEEEEEEeeeecCCC--C-------CCCCCEEEEEEcC-----eeEEEeeecCCCCCcccceEEEEecCCCCCCeEEE
Q 009539 410 GGGLLVVIVHEAQDVEG--K-------HHTNPYARILFRG-----EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHV 475 (532)
Q Consensus 410 ~~g~L~v~i~~a~~L~~--~-------~~~dpyv~v~~~~-----~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v 475 (532)
....|.|+|+.+++++. . ...||||+|.+-| .+++|++..++.||+|||+|+|.+..+ .-..+.+
T Consensus 467 ~~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vP-ELAllRf 545 (598)
T PLN02230 467 PKKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVP-ELALLRV 545 (598)
T ss_pred cCcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcC-ceeEEEE
Confidence 34689999999998642 1 2479999999865 235899888999999999999999876 3458999
Q ss_pred EEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCCC-----CeEEEEEEEE
Q 009539 476 EVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK-----NGRIQIELQW 529 (532)
Q Consensus 476 ~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~-----~G~i~l~~~w 529 (532)
+|+|++. .+.|+++|+..+++..|..+- +..+|.+.. .-.+.++++|
T Consensus 546 ~V~d~d~----~~~ddfiGQ~~lPv~~Lr~Gy---R~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 546 EVHEHDI----NEKDDFGGQTCLPVSEIRQGI---HAVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred EEEECCC----CCCCCEEEEEEcchHHhhCcc---ceEeccCCCcCCCCCCeeEEEEEe
Confidence 9999975 357999999999999987643 355665542 3566777766
No 227
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.66 E-value=4.2e-08 Score=106.74 Aligned_cols=117 Identities=26% Similarity=0.342 Sum_probs=96.0
Q ss_pred CccccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCC---CCCCCCEEEEEEcCe-----
Q 009539 370 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEG---KHHTNPYARILFRGE----- 441 (532)
Q Consensus 370 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~---~~~~dpyv~v~~~~~----- 441 (532)
++..|++.++++|. .|.|+|.|.-|++|+- ...+||||+.|+...
T Consensus 1509 ~~iggqV~LsIsY~---------------------------~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~s 1561 (1639)
T KOG0905|consen 1509 GEIGGQVKLSISYN---------------------------NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTS 1561 (1639)
T ss_pred cccCceEEEEEEEc---------------------------CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhh
Confidence 55677999999996 6899999999999953 458999999999643
Q ss_pred eEEEeeecCCCCCcccceEEEEec-CCC-CCCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCC
Q 009539 442 ERKTKHVKKNRDPRWEEEFQFMLE-EPP-TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLID 517 (532)
Q Consensus 442 ~~kT~vv~~t~nP~w~e~f~f~v~-~~~-~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~ 517 (532)
++||+++++|.||.|||...+.-. ... ....|.+.||..+. +..+.++|.+.|+|.++...++..+||+|..
T Consensus 1562 KRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~~~----~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1562 KRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSNGG----LLENVFLGGVNIPLLKVDLLKESVGWYNLGA 1635 (1639)
T ss_pred hhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecccc----eeeeeeeeeeecchhhcchhhhhcceeeccc
Confidence 469999999999999999888722 111 22479999999875 5678999999999999988777779999964
No 228
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.65 E-value=4e-07 Score=96.29 Aligned_cols=111 Identities=20% Similarity=0.278 Sum_probs=85.8
Q ss_pred ceEEEEEEeeeecCC----C-----CCCCCCEEEEEEcC-----eeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEE
Q 009539 411 GGLLVVIVHEAQDVE----G-----KHHTNPYARILFRG-----EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVE 476 (532)
Q Consensus 411 ~g~L~v~i~~a~~L~----~-----~~~~dpyv~v~~~~-----~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~ 476 (532)
...|.|+|+.|++++ . ....||||+|.+-| .+++|+++.++.||+|||.|+|.+..+ .-..+.+.
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~P-eLAllRf~ 529 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVP-ELALLRLE 529 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcC-ceeEEEEE
Confidence 467999999998743 1 12579999999954 346999999999999999999999875 34589999
Q ss_pred EEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCCC-----CeEEEEEEEE
Q 009539 477 VCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK-----NGRIQIELQW 529 (532)
Q Consensus 477 V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~-----~G~i~l~~~w 529 (532)
|+|+|. .+.++++|+..++++.|..+- +..+|.+.. ...+.++++|
T Consensus 530 V~d~D~----~~~ddfigq~~lPv~~Lr~Gy---R~V~L~~~~g~~l~~a~Lfv~~~~ 580 (581)
T PLN02222 530 VHEYDM----SEKDDFGGQTCLPVWELSQGI---RAFPLHSRKGEKYKSVKLLVKVEF 580 (581)
T ss_pred EEECCC----CCCCcEEEEEEcchhhhhCcc---ceEEccCCCcCCCCCeeEEEEEEe
Confidence 999875 457899999999999986643 455665432 3566677766
No 229
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.65 E-value=8.4e-08 Score=97.28 Aligned_cols=114 Identities=18% Similarity=0.400 Sum_probs=95.1
Q ss_pred ceEEEEEEeeeecCCCC----CCCCCEEEEEEcCeeEEEeeecCCCCCccc-ceEEEEecCCCCC-CeEEEEEEEccccc
Q 009539 411 GGLLVVIVHEAQDVEGK----HHTNPYARILFRGEERKTKHVKKNRDPRWE-EEFQFMLEEPPTN-DRLHVEVCSVSSRI 484 (532)
Q Consensus 411 ~g~L~v~i~~a~~L~~~----~~~dpyv~v~~~~~~~kT~vv~~t~nP~w~-e~f~f~v~~~~~~-~~l~v~V~d~~~~~ 484 (532)
.|.+.|.|..||+||.. ...|.||++++.+.++||.|..+++||.|| +-|.|.+.+.... +.+.|+++|+|.
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dt-- 79 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT-- 79 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccc--
Confidence 47889999999999864 468999999999999999999999999999 4599999876443 489999999997
Q ss_pred cCCCCCceeEEEEEechhhhcc----------ceeceEEEeCCC---CCeEEEEEEE
Q 009539 485 GLLHPKETLGYIDINLSDVVSN----------KRINEKYHLIDS---KNGRIQIELQ 528 (532)
Q Consensus 485 ~~~~~d~~lG~~~i~L~~l~~~----------~~~~~~~~L~~~---~~G~i~l~~~ 528 (532)
.+.++.||.+.|+++.+.-. .-+..||+..+. -+|+|.+-++
T Consensus 80 --ysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivk 134 (1169)
T KOG1031|consen 80 --YSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVK 134 (1169)
T ss_pred --cccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEE
Confidence 47899999999999988642 236789998765 3688876543
No 230
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.64 E-value=5.7e-08 Score=98.51 Aligned_cols=120 Identities=26% Similarity=0.419 Sum_probs=97.3
Q ss_pred EEEEEEEEEcCCCCcCCCC-CCCCcEEEEEEeCCcCCceeeEeeCCCCCceee-cEEEEEeeCC--CCCEEEEEEEEccC
Q 009539 254 GILHVKVVKAMNLKKKDLL-GASDPYVKLKITEDKLPSKKTTVKHKNLNPEWN-EEYNFTVRDP--ESQAVELAVYDWEQ 329 (532)
Q Consensus 254 g~L~V~v~~A~~L~~~d~~-g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wn-e~f~f~v~~~--~~~~L~v~v~d~d~ 329 (532)
|.|.|+|..|++|+-+|.. ...|.||++.+..... +|.+..+++||.|| +.|.|.|.+. .+..|.+++.|+|.
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~---ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dt 79 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTF---KTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT 79 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecccce---ehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccc
Confidence 6789999999999999865 3569999999987654 89999999999999 6789998754 36789999999999
Q ss_pred CCCCCeeEEEEEeCccCCCCC----------CeEEEEecccccccCCCCCCccccEEEEEEEEE
Q 009539 330 VGKHDKMGMNVVPLKELTPEE----------PSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK 383 (532)
Q Consensus 330 ~~~d~~iG~~~i~l~~l~~~~----------~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~ 383 (532)
.+.+|-||.+.|++..|.-.+ ....|++++.. -...+|+|.+-+...
T Consensus 80 ysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdt-------ihgirgeinvivkvd 136 (1169)
T KOG1031|consen 80 YSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDT-------IHGIRGEINVIVKVD 136 (1169)
T ss_pred cccccccceeeeccChHHHHhHHhhhcCCceEEeeeeeccee-------cccccceeEEEEEEe
Confidence 999999999999999876332 23467877542 245788888777543
No 231
>PLN02352 phospholipase D epsilon
Probab=98.52 E-value=8.8e-07 Score=95.66 Aligned_cols=109 Identities=21% Similarity=0.359 Sum_probs=86.0
Q ss_pred ceEEEEEEeeeecCCCC--------CCCCCEEEEEEcCeeE-EEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcc
Q 009539 411 GGLLVVIVHEAQDVEGK--------HHTNPYARILFRGEER-KTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVS 481 (532)
Q Consensus 411 ~g~L~v~i~~a~~L~~~--------~~~dpyv~v~~~~~~~-kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~ 481 (532)
-|.|.++|.+|+.+... ...+|||.|.+++.+. || .+..||+|+|.|..+|... .+..+.+.|.|.
T Consensus 9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~-~~~~~~f~vk~~- 83 (758)
T PLN02352 9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHP-LDSTITITLKTK- 83 (758)
T ss_pred ccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeee-cCCcEEEEEecC-
Confidence 46777777777633210 1239999999998776 88 6677999999999999875 334799999883
Q ss_pred ccccCCCCCceeEEEEEechhhhccce-eceEEEeCCCC-----CeEEEEEEEEEeC
Q 009539 482 SRIGLLHPKETLGYIDINLSDVVSNKR-INEKYHLIDSK-----NGRIQIELQWRTA 532 (532)
Q Consensus 482 ~~~~~~~~d~~lG~~~i~L~~l~~~~~-~~~~~~L~~~~-----~G~i~l~~~w~p~ 532 (532)
-.+||.+.++..+++.++. ++.||++.+.. ..+|+++++|.|+
T Consensus 84 --------~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 132 (758)
T PLN02352 84 --------CSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPA 132 (758)
T ss_pred --------CeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEh
Confidence 3799999999999999865 99999997643 2599999999985
No 232
>PLN02228 Phosphoinositide phospholipase C
Probab=98.51 E-value=1.5e-06 Score=91.72 Aligned_cols=113 Identities=19% Similarity=0.239 Sum_probs=87.4
Q ss_pred ceEEEEEEeeeecCCC----C-----CCCCCEEEEEEcC-----eeEEEeeecCCCCCcc-cceEEEEecCCCCCCeEEE
Q 009539 411 GGLLVVIVHEAQDVEG----K-----HHTNPYARILFRG-----EERKTKHVKKNRDPRW-EEEFQFMLEEPPTNDRLHV 475 (532)
Q Consensus 411 ~g~L~v~i~~a~~L~~----~-----~~~dpyv~v~~~~-----~~~kT~vv~~t~nP~w-~e~f~f~v~~~~~~~~l~v 475 (532)
...|+|+|++|++|+. . ...||||+|.+.| .+++|+++.++.||+| ||.|+|.+..+ .-..+.+
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~p-ELA~lRf 508 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVP-ELALLWF 508 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcC-ceeEEEE
Confidence 4579999999998731 1 2479999999854 2459999988899999 99999999876 3458999
Q ss_pred EEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCCC-----CeEEEEEEEEEe
Q 009539 476 EVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK-----NGRIQIELQWRT 531 (532)
Q Consensus 476 ~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~-----~G~i~l~~~w~p 531 (532)
.|+|++. .+.|+++|+..++++.|..+- +..+|.+.. ...+.+++.+.|
T Consensus 509 ~V~D~d~----~~~d~figq~~lPv~~Lr~GY---R~VpL~~~~G~~l~~atLfv~~~~~~ 562 (567)
T PLN02228 509 KVQDYDN----DTQNDFAGQTCLPLPELKSGV---RAVRLHDRAGKAYKNTRLLVSFALDP 562 (567)
T ss_pred EEEeCCC----CCCCCEEEEEEcchhHhhCCe---eEEEccCCCCCCCCCeEEEEEEEEcC
Confidence 9999875 467899999999999986542 456775542 466777777654
No 233
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.49 E-value=1.3e-06 Score=92.76 Aligned_cols=111 Identities=20% Similarity=0.325 Sum_probs=86.6
Q ss_pred EEEEEEeeeecCCCC-------CCCCCEEEEEEcCe-----eEEEeee-cCCCCCcccceEEEEecCCCCCCeEEEEEEE
Q 009539 413 LLVVIVHEAQDVEGK-------HHTNPYARILFRGE-----ERKTKHV-KKNRDPRWEEEFQFMLEEPPTNDRLHVEVCS 479 (532)
Q Consensus 413 ~L~v~i~~a~~L~~~-------~~~dpyv~v~~~~~-----~~kT~vv-~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d 479 (532)
.|.|.|+.+++++.. ..+||||.|.+.|- ..+|+++ .++-||.|+|+|+|.+..+ .-.-|.+.|+|
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vP-ELAliRF~V~d 695 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVP-ELALIRFEVHD 695 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEecc-ceeEEEEEEEe
Confidence 899999999976531 35899999998764 3499955 5788999999999999987 34589999999
Q ss_pred ccccccCCCCCceeEEEEEechhhhccceeceEEEeCCC-----CCeEEEEEEEEEe
Q 009539 480 VSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDS-----KNGRIQIELQWRT 531 (532)
Q Consensus 480 ~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~-----~~G~i~l~~~w~p 531 (532)
++. .++|+++|+..+|++.|..+= +-.+|.+. ..-.+-+++.|.+
T Consensus 696 ~d~----~~~ddF~GQ~tlP~~~L~~Gy---RhVpL~~~~G~~~~~asLfv~i~~~~ 745 (746)
T KOG0169|consen 696 YDY----IGKDDFIGQTTLPVSELRQGY---RHVPLLSREGEALSSASLFVRIAIVE 745 (746)
T ss_pred cCC----CCcccccceeeccHHHhhCce---eeeeecCCCCccccceeEEEEEEEec
Confidence 986 467999999999999986642 45566543 2467777777754
No 234
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=98.48 E-value=5.7e-07 Score=92.61 Aligned_cols=172 Identities=22% Similarity=0.299 Sum_probs=111.0
Q ss_pred EEeEEEecCCCCCCCeeeEEEEEccCCceEEEEEEEccc---cccCCchhhhhhhccceeeeCCcccccCCC-CCc----
Q 009539 176 AQPRITLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGA---DLMSIPGLYRFVQVANMYLWPKTLEVPILD-PSK---- 247 (532)
Q Consensus 176 g~~rv~l~pl~~~~P~~~~v~~sf~~~P~id~~~~~~g~---~~~~~P~l~~~i~~~~~~v~P~~~~~~l~~-~~~---- 247 (532)
|+..++..-+.|.|-..-.+.+.|.+...+.|.+..+.. ++.+...+.+.....++++.-..+..++.- ...
T Consensus 43 ~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~~~~~~~ 122 (529)
T KOG1327|consen 43 GRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKPGKNAGS 122 (529)
T ss_pred cceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhcccCccCCc
Confidence 455555666778888888889999999999999876532 222222222222222222222222222210 000
Q ss_pred -------cCCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEe---CCcCCceeeEeeCCCCCceeecEEEEEeeCCC-
Q 009539 248 -------AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKIT---EDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE- 316 (532)
Q Consensus 248 -------~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~---~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~- 316 (532)
...........-..+|++|.++|.++++|||..++-. +.....++|.+.++++||.|.+ |.+......
T Consensus 123 g~iti~aee~~~~~~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~ 201 (529)
T KOG1327|consen 123 GTITISAEEDESDNDVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCS 201 (529)
T ss_pred ccEEEEeecccccCceeeeeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcc
Confidence 0011111112223558899999999999999999764 2334457999999999999984 555544322
Q ss_pred ---CCEEEEEEEEccCCCCCCeeEEEEEeCccCCC
Q 009539 317 ---SQAVELAVYDWEQVGKHDKMGMNVVPLKELTP 348 (532)
Q Consensus 317 ---~~~L~v~v~d~d~~~~d~~iG~~~i~l~~l~~ 348 (532)
...+.+.+||++..++++++|++..++.++..
T Consensus 202 ~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 202 KDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQE 236 (529)
T ss_pred cCCCCceEEEEeccCCCCCcCceeEecccHHHhcc
Confidence 46789999999999999999999999999975
No 235
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.40 E-value=7.6e-07 Score=74.04 Aligned_cols=102 Identities=22% Similarity=0.319 Sum_probs=77.0
Q ss_pred EEEEEeeeecCCCC----------------CCCCCEEEEEE----cCeeEEEeeecCCCCCcccceEEEEecC-------
Q 009539 414 LVVIVHEAQDVEGK----------------HHTNPYARILF----RGEERKTKHVKKNRDPRWEEEFQFMLEE------- 466 (532)
Q Consensus 414 L~v~i~~a~~L~~~----------------~~~dpyv~v~~----~~~~~kT~vv~~t~nP~w~e~f~f~v~~------- 466 (532)
|.|.|++|.+|... =.-|+||++.+ +++.++|+++.++-.|.|+..++|++.-
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 46788888888631 14689999995 3456799999999999999999999971
Q ss_pred -C------CCCCeEEEEEEEccccccC------CCCCceeEEEEEechhhhcc-ceeceEEEe
Q 009539 467 -P------PTNDRLHVEVCSVSSRIGL------LHPKETLGYIDINLSDVVSN-KRINEKYHL 515 (532)
Q Consensus 467 -~------~~~~~l~v~V~d~~~~~~~------~~~d~~lG~~~i~L~~l~~~-~~~~~~~~L 515 (532)
. -....+.++||++.....- -.+|-.||.+.||+.+|+.+ ..+..||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 1 1134799999988643110 12466899999999999984 578999985
No 236
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.32 E-value=4.4e-06 Score=88.28 Aligned_cols=98 Identities=18% Similarity=0.228 Sum_probs=78.2
Q ss_pred eEEEEEEeeeecCCCC--CCCCCEEEEEEcCe-----e-EEEeeecCCCCCccc-ceEEEEecCCCCCCeEEEEEEEccc
Q 009539 412 GLLVVIVHEAQDVEGK--HHTNPYARILFRGE-----E-RKTKHVKKNRDPRWE-EEFQFMLEEPPTNDRLHVEVCSVSS 482 (532)
Q Consensus 412 g~L~v~i~~a~~L~~~--~~~dpyv~v~~~~~-----~-~kT~vv~~t~nP~w~-e~f~f~v~~~~~~~~l~v~V~d~~~ 482 (532)
-.|.|.|+.||.|+.. +...|||+|.+-|. + ++|.|+.++.||+|| |.|+|.+.++ .-..|.+.|+|.|-
T Consensus 1065 ~~lsv~vigaRHL~k~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nP-e~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNP-EFAFLRFVVYEEDM 1143 (1267)
T ss_pred eEEEEEEeeccccccCCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCC-ceEEEEEEEecccc
Confidence 4689999999999975 45679999998653 3 355667789999999 9999999997 44589999999974
Q ss_pred cccCCCCCceeEEEEEechhhhccceeceEEEeCC
Q 009539 483 RIGLLHPKETLGYIDINLSDVVSNKRINEKYHLID 517 (532)
Q Consensus 483 ~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~ 517 (532)
++...+||+++.|+..+..+ -+..+|.+
T Consensus 1144 ----fs~~~FiaqA~yPv~~ik~G---fRsVpLkN 1171 (1267)
T KOG1264|consen 1144 ----FSDPNFLAQATYPVKAIKSG---FRSVPLKN 1171 (1267)
T ss_pred ----cCCcceeeeeecchhhhhcc---ceeeeccc
Confidence 88889999999999887653 23445544
No 237
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.29 E-value=5.1e-07 Score=98.58 Aligned_cols=106 Identities=25% Similarity=0.268 Sum_probs=88.0
Q ss_pred eEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCc--CCceeeEeeCCCCCceeecEEEEE---eeCCCCCEEEEEEEEc
Q 009539 253 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFT---VRDPESQAVELAVYDW 327 (532)
Q Consensus 253 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~---v~~~~~~~L~v~v~d~ 327 (532)
.|.|.|-|..|++|+-..-...+||||+.++.+.. ..++||++.++|.||+|||...+. ........|.++||..
T Consensus 1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence 68999999999999655545678999999997643 345799999999999999998765 2223367899999999
Q ss_pred cCCCCCCeeEEEEEeCccCCCCCCeEEEEec
Q 009539 328 EQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 358 (532)
Q Consensus 328 d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l 358 (532)
+....+.++|.+.++|.++........|+.+
T Consensus 1603 ~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~l 1633 (1639)
T KOG0905|consen 1603 GGLLENVFLGGVNIPLLKVDLLKESVGWYNL 1633 (1639)
T ss_pred cceeeeeeeeeeecchhhcchhhhhcceeec
Confidence 9888999999999999999877666677766
No 238
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=2.5e-06 Score=81.82 Aligned_cols=97 Identities=31% Similarity=0.441 Sum_probs=80.4
Q ss_pred cCCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCc--CCceeeEeeCCCCCceeecEEEEEeeCC--CCCEEEEE
Q 009539 248 AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELA 323 (532)
Q Consensus 248 ~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~ 323 (532)
.+.....-|.|++++|..|..+|.+|.+||||+.++.+.. .-+++|.+.++|.||+||+.|.|.+... ....+.+.
T Consensus 227 ~~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~ls 306 (362)
T KOG1013|consen 227 AYSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALS 306 (362)
T ss_pred ccCcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEe
Confidence 4555677899999999999999999999999999997543 2346899999999999999999988643 36789999
Q ss_pred EEEccCCCCCCeeEEEEEeCc
Q 009539 324 VYDWEQVGKHDKMGMNVVPLK 344 (532)
Q Consensus 324 v~d~d~~~~d~~iG~~~i~l~ 344 (532)
|||++..+..+.+|-+....-
T Consensus 307 vgd~~~G~s~d~~GG~~~g~~ 327 (362)
T KOG1013|consen 307 VGDYDIGKSNDSIGGSMLGGY 327 (362)
T ss_pred ecccCCCcCccCCCccccccc
Confidence 999998778899888665443
No 239
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=98.13 E-value=2.1e-06 Score=66.15 Aligned_cols=91 Identities=19% Similarity=0.271 Sum_probs=69.6
Q ss_pred EEEEEEcCCCCcCCCCC-CCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCC--CCCEEEEEEEEccCCCCC
Q 009539 257 HVKVVKAMNLKKKDLLG-ASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYDWEQVGKH 333 (532)
Q Consensus 257 ~V~v~~A~~L~~~d~~g-~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d~d~~~~d 333 (532)
.|++++|++|.-....| .+.-|++--+.-.+....||+++.+..||+|+|+|.|.+... .+-.|-+.|+. ...+.
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RK 79 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRK 79 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCcc
Confidence 58999999997654433 345577665543343346899999999999999999987643 35578888888 56788
Q ss_pred CeeEEEEEeCccCCCC
Q 009539 334 DKMGMNVVPLKELTPE 349 (532)
Q Consensus 334 ~~iG~~~i~l~~l~~~ 349 (532)
+.||.|++.++++-..
T Consensus 80 e~iG~~sL~l~s~gee 95 (103)
T cd08684 80 RTIGECSLSLRTLSTQ 95 (103)
T ss_pred ceeeEEEeecccCCHH
Confidence 9999999999988765
No 240
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=98.03 E-value=0.0015 Score=65.33 Aligned_cols=232 Identities=16% Similarity=0.278 Sum_probs=154.7
Q ss_pred EEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeC-------CCCCEEEEEEEEcc
Q 009539 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRD-------PESQAVELAVYDWE 328 (532)
Q Consensus 256 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~-------~~~~~L~v~v~d~d 328 (532)
+.|+|+++++.+... ...-.+...+++... .|..+..+..|.||.+....+.. .....|++++|..|
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l---~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~ 75 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESL---ETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVD 75 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCcee---eecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEec
Confidence 578999999998763 346688888888765 67788889999999888877642 23678999999988
Q ss_pred -CCCCCCeeEEEEEeCccC---CCC--CCeEEEEecccccccCCCCCCccccEEEEEEEEEEccCCCCC--c---c---c
Q 009539 329 -QVGKHDKMGMNVVPLKEL---TPE--EPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLP--K---S---F 394 (532)
Q Consensus 329 -~~~~d~~iG~~~i~l~~l---~~~--~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~--~---~---~ 394 (532)
..++.+.+|.+.++|+.. ..+ .....|++|+.... +-.+.+-+|.+.+........... + . .
T Consensus 76 ~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~----~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p 151 (340)
T PF12416_consen 76 GSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSS----KYKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAP 151 (340)
T ss_pred CCCCcceeccEEEEEccccccccccccccCCCeeEcccccc----ccccCCccEEEEEEEeccccccCCccccccccCCC
Confidence 567788999999999998 544 45667888865322 123345677777776654432100 0 0 0
Q ss_pred cccc-ccc----------------------cCCCCCCCCceEEEEEEeeeecCCCC---------CCCCCEEEEEEcCee
Q 009539 395 EESQ-TVQ----------------------KAPENTPAGGGLLVVIVHEAQDVEGK---------HHTNPYARILFRGEE 442 (532)
Q Consensus 395 ~~~~-~~~----------------------~~~~~~~~~~g~L~v~i~~a~~L~~~---------~~~dpyv~v~~~~~~ 442 (532)
...+ ..+ -.|.+.....-.|.|++..|+||..- +...-|....+-|..
T Consensus 152 ~~~~~~~~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~ 231 (340)
T PF12416_consen 152 PRQGHVPPPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGND 231 (340)
T ss_pred cccCCCcccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcE
Confidence 0000 000 00111122355788999999988542 123446666677888
Q ss_pred EEEeeecCCCCCccc-ceEE-EEecCC--------CCCCeEEEEEEEccccccCCCCCceeEEEEEechhhhcc
Q 009539 443 RKTKHVKKNRDPRWE-EEFQ-FMLEEP--------PTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSN 506 (532)
Q Consensus 443 ~kT~vv~~t~nP~w~-e~f~-f~v~~~--------~~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~ 506 (532)
..|...+...+|.|. |.-. +.++.. .....|.|.++.. +..||.+.+++..++..
T Consensus 232 Vt~~~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~g---------~~~Lg~~~v~l~~Ll~~ 296 (340)
T PF12416_consen 232 VTTEPFKSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCCG---------NQSLGSTSVPLQPLLPK 296 (340)
T ss_pred eEeeeccccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEeeC---------CcEEEEEEEEhhhccCC
Confidence 888888888899875 2233 555532 1234677777764 57899999999999753
No 241
>PLN02964 phosphatidylserine decarboxylase
Probab=97.78 E-value=3.3e-05 Score=83.12 Aligned_cols=92 Identities=15% Similarity=0.274 Sum_probs=74.7
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEcc
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWE 328 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d 328 (532)
.+.-.|+..+++++|+ ++. .|+|..+-.-|.+ ..||.+.++|.||+|||...|.+........++.|||.+
T Consensus 49 ~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~g~~--~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (644)
T PLN02964 49 AEDFSGIALLTLVGAE----MKF---KDKWLACVSFGEQ--TFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETN 119 (644)
T ss_pred cccccCeEEEEeehhh----hcc---CCcEEEEEEecce--eeeeccccccCCcccchhhceEeccCCcceEEEEEEecC
Confidence 3456799999999998 333 4887665444433 269999999999999999999998776667899999999
Q ss_pred CCCCCCeeEEEEEeCccCCCC
Q 009539 329 QVGKHDKMGMNVVPLKELTPE 349 (532)
Q Consensus 329 ~~~~d~~iG~~~i~l~~l~~~ 349 (532)
.+++++++|.|++++.++...
T Consensus 120 ~~s~n~lv~~~e~~~t~f~~k 140 (644)
T PLN02964 120 RLSKNTLVGYCELDLFDFVTQ 140 (644)
T ss_pred CCCHHHhhhheeecHhhccHH
Confidence 999999999999988776543
No 242
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=97.73 E-value=4.3e-05 Score=75.38 Aligned_cols=118 Identities=19% Similarity=0.308 Sum_probs=93.6
Q ss_pred CceEEEEEEeeeecCCCC---CCCCCEEEEEEc-----CeeEEEeeecCCCCCcccceEEEEecCCCC----------CC
Q 009539 410 GGGLLVVIVHEAQDVEGK---HHTNPYARILFR-----GEERKTKHVKKNRDPRWEEEFQFMLEEPPT----------ND 471 (532)
Q Consensus 410 ~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~-----~~~~kT~vv~~t~nP~w~e~f~f~v~~~~~----------~~ 471 (532)
....|.+.|.++++++.. ...|.|+++.+. .++.||.+++.|.+|.|+|.|...+...+. ..
T Consensus 365 ~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~ 444 (523)
T KOG3837|consen 365 KDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRL 444 (523)
T ss_pred chhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhc
Confidence 345677888888888653 357889988762 234599999999999999999999986321 12
Q ss_pred eEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCCC---CeEEEEEEEEE
Q 009539 472 RLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK---NGRIQIELQWR 530 (532)
Q Consensus 472 ~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~---~G~i~l~~~w~ 530 (532)
-+.++++.+. |++++|.++|.+++.|.-|...-.+...|+|.++. +|.+.++++.+
T Consensus 445 g~kfeifhkg---gf~rSdkl~gt~nikle~Len~cei~e~~~l~DGRK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 445 GKKFEIFHKG---GFNRSDKLTGTGNIKLEILENMCEICEYLPLKDGRKAVGGKLEVKVRIR 503 (523)
T ss_pred CeeEEEeecc---ccccccceeceeeeeehhhhcccchhhceeccccccccCCeeEEEEEEe
Confidence 5889999886 45789999999999999887777888999998874 69999888765
No 243
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.59 E-value=0.0001 Score=72.14 Aligned_cols=104 Identities=23% Similarity=0.333 Sum_probs=83.8
Q ss_pred CceEEEEEEeeeecCCCC----CCCCCEEEEEEcCe-----eEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEc
Q 009539 410 GGGLLVVIVHEAQDVEGK----HHTNPYARILFRGE-----ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSV 480 (532)
Q Consensus 410 ~~g~L~v~i~~a~~L~~~----~~~dpyv~v~~~~~-----~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~ 480 (532)
..|.+.|.|++|++|..+ ..++|||+||+... +.+|+...+|.+|.|.+...|.-.. ....|.+.||-.
T Consensus 267 ~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp--~~k~Lq~tv~gd 344 (405)
T KOG2060|consen 267 SKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSP--PGKYLQGTVWGD 344 (405)
T ss_pred ccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCC--CccEEEEEEecc
Confidence 578899999999999643 37999999998654 3499999999999888877776543 346899999976
Q ss_pred cccccCCCCCceeEEEEEechhhhccc-eeceEEEeCCC
Q 009539 481 SSRIGLLHPKETLGYIDINLSDVVSNK-RINEKYHLIDS 518 (532)
Q Consensus 481 ~~~~~~~~~d~~lG~~~i~L~~l~~~~-~~~~~~~L~~~ 518 (532)
-.+ +..+.++|.+.+.|.++-... ....||+|-+.
T Consensus 345 ygR---md~k~fmg~aqi~l~eL~ls~~~~igwyKlfgs 380 (405)
T KOG2060|consen 345 YGR---MDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGS 380 (405)
T ss_pred ccc---cchHHHhhHHHHHhhhhccccccceeeeeccCC
Confidence 544 678999999999999997654 67899999754
No 244
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.58 E-value=5.5e-05 Score=58.52 Aligned_cols=92 Identities=15% Similarity=0.234 Sum_probs=66.4
Q ss_pred EEEeeeecCCC--C--CCCCCEEEEEE--cCe-eEEEeeecCCCCCcccceEEEEecCCCCCC-eEEEEEEEccccccCC
Q 009539 416 VIVHEAQDVEG--K--HHTNPYARILF--RGE-ERKTKHVKKNRDPRWEEEFQFMLEEPPTND-RLHVEVCSVSSRIGLL 487 (532)
Q Consensus 416 v~i~~a~~L~~--~--~~~dpyv~v~~--~~~-~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~-~l~v~V~d~~~~~~~~ 487 (532)
+++.+|+||.- . ..+.-|++--+ ... ..||+..+++.||+|.|+|.|.+......+ .|.+.|+.. +
T Consensus 3 itv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~------~ 76 (103)
T cd08684 3 ITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQ------T 76 (103)
T ss_pred EEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeecc------C
Confidence 67889999853 2 23445666433 222 359999999999999999999987643444 788999984 4
Q ss_pred CCCceeEEEEEechhhhccceeceEEE
Q 009539 488 HPKETLGYIDINLSDVVSNKRINEKYH 514 (532)
Q Consensus 488 ~~d~~lG~~~i~L~~l~~~~~~~~~~~ 514 (532)
.+++.||.+.+.|+++-.. +.++|.+
T Consensus 77 ~RKe~iG~~sL~l~s~gee-E~~HW~e 102 (103)
T cd08684 77 PRKRTIGECSLSLRTLSTQ-ETDHWLE 102 (103)
T ss_pred CccceeeEEEeecccCCHH-Hhhhhhc
Confidence 5789999999999987443 3355543
No 245
>PLN02964 phosphatidylserine decarboxylase
Probab=97.55 E-value=0.00012 Score=78.75 Aligned_cols=100 Identities=19% Similarity=0.394 Sum_probs=79.1
Q ss_pred CceEEEEEEeeeecCCCCCCCCCEEE-EEEcCeeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCCC
Q 009539 410 GGGLLVVIVHEAQDVEGKHHTNPYAR-ILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLH 488 (532)
Q Consensus 410 ~~g~L~v~i~~a~~L~~~~~~dpyv~-v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~ 488 (532)
-+|++.+++++|+ .+..|+|.. +++|.+.+||.+.++|.||+||+...|.+... .....++.|||.++ ++
T Consensus 52 ~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~s 122 (644)
T PLN02964 52 FSGIALLTLVGAE----MKFKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKN-GPHLARISVFETNR----LS 122 (644)
T ss_pred ccCeEEEEeehhh----hccCCcEEEEEEecceeeeeccccccCCcccchhhceEeccC-CcceEEEEEEecCC----CC
Confidence 3799999999998 333588665 56788889999999999999999999998765 23457999999986 78
Q ss_pred CCceeEEEEEechhhhccc--eeceEEEeCCC
Q 009539 489 PKETLGYIDINLSDVVSNK--RINEKYHLIDS 518 (532)
Q Consensus 489 ~d~~lG~~~i~L~~l~~~~--~~~~~~~L~~~ 518 (532)
.++.+|.++++|.++...+ ...+-|.+.+.
T Consensus 123 ~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~ 154 (644)
T PLN02964 123 KNTLVGYCELDLFDFVTQEPESACESFDLLDP 154 (644)
T ss_pred HHHhhhheeecHhhccHHHHHHHHHHHHHHCC
Confidence 9999999999998887654 23344555444
No 246
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.33 E-value=0.00058 Score=57.16 Aligned_cols=101 Identities=20% Similarity=0.321 Sum_probs=71.7
Q ss_pred EEEEEEEcCCCCcCC---------CC----CCCCcEEEEEEeC-CcCCceeeEeeCCCCCceeecEEEEEee--------
Q 009539 256 LHVKVVKAMNLKKKD---------LL----GASDPYVKLKITE-DKLPSKKTTVKHKNLNPEWNEEYNFTVR-------- 313 (532)
Q Consensus 256 L~V~v~~A~~L~~~d---------~~----g~~dpyv~v~~~~-~~~~~~~T~v~~~t~nP~Wne~f~f~v~-------- 313 (532)
|.|.|++|.+|+..- .. -.-++||++.+.- .+...++|+++-++.-|.|+.+++|.+.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 467888988887421 10 1238999999642 1223468999999999999999999875
Q ss_pred C-------CCCCEEEEEEEEccCC----------CCCCeeEEEEEeCccCCCCC-CeEEEE
Q 009539 314 D-------PESQAVELAVYDWEQV----------GKHDKMGMNVVPLKELTPEE-PSVKTL 356 (532)
Q Consensus 314 ~-------~~~~~L~v~v~d~d~~----------~~d~~iG~~~i~l~~l~~~~-~~~~~l 356 (532)
+ .+...+.++||+.+.. .+|-++|.+.||+.+|.... +...|+
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~ 141 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWY 141 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccc
Confidence 1 1256799999997632 34668999999999987542 334444
No 247
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=96.97 E-value=0.019 Score=50.41 Aligned_cols=120 Identities=18% Similarity=0.245 Sum_probs=88.3
Q ss_pred CCceEEEEEEeeeecCCC-----CCCCCC--EEEEEEcCeeEEEeeecCCCCCcccceEEEEecCCC------------C
Q 009539 409 AGGGLLVVIVHEAQDVEG-----KHHTNP--YARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPP------------T 469 (532)
Q Consensus 409 ~~~g~L~v~i~~a~~L~~-----~~~~dp--yv~v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~~~------------~ 469 (532)
.....|+++|..++-.-. .+..+. ++-+.++++.++|+.+.-+.+|.|+|.|-|.++... .
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~ 85 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSI 85 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcC
Confidence 356788999998874421 023344 444556899999999999999999999999997642 2
Q ss_pred CCeEEEEEEEccccccCCCCCceeEEEEEechhhhcccee--ceEEEeCCC------CCeEEEEEEEEEeC
Q 009539 470 NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRI--NEKYHLIDS------KNGRIQIELQWRTA 532 (532)
Q Consensus 470 ~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~--~~~~~L~~~------~~G~i~l~~~w~p~ 532 (532)
.+.+++-|.-.+.+ +...++|+-.++.+.++..+.. .-...|.+. ..|-+.++++..|+
T Consensus 86 ~~pihivli~~d~~----~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~ 152 (156)
T PF15627_consen 86 SDPIHIVLIRTDPS----GETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLPN 152 (156)
T ss_pred CCceEEEEEEecCC----CceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeecC
Confidence 34788888877652 3458999999999999986543 455666543 25899999998874
No 248
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.97 E-value=0.00052 Score=67.42 Aligned_cols=108 Identities=26% Similarity=0.438 Sum_probs=85.3
Q ss_pred CeEEEEEEEEEcCCCCcCCCC-CCCCcEEEEEEeCCc--CCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEE-Ec
Q 009539 252 PVGILHVKVVKAMNLKKKDLL-GASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVY-DW 327 (532)
Q Consensus 252 ~~g~L~V~v~~A~~L~~~d~~-g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~-d~ 327 (532)
.+|.|.|.|++|++|..+... ..++|||+|++.+.. ..+.+|+...+|.+|-+.+...|.- .+....|.+.+| |+
T Consensus 267 ~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~-sp~~k~Lq~tv~gdy 345 (405)
T KOG2060|consen 267 SKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQ-SPPGKYLQGTVWGDY 345 (405)
T ss_pred ccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhcc-CCCccEEEEEEeccc
Confidence 578999999999999876543 257999999997543 3456888889999998887766665 345788999998 46
Q ss_pred cCCCCCCeeEEEEEeCccCCCCC-CeEEEEeccc
Q 009539 328 EQVGKHDKMGMNVVPLKELTPEE-PSVKTLDLLK 360 (532)
Q Consensus 328 d~~~~d~~iG~~~i~l~~l~~~~-~~~~~l~l~~ 360 (532)
.+...+.|+|.+.+-+.+|.... ....|+++..
T Consensus 346 gRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfg 379 (405)
T KOG2060|consen 346 GRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFG 379 (405)
T ss_pred cccchHHHhhHHHHHhhhhccccccceeeeeccC
Confidence 66777889999999999998775 6667877754
No 249
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=96.95 E-value=0.0071 Score=60.51 Aligned_cols=112 Identities=17% Similarity=0.353 Sum_probs=88.8
Q ss_pred EEEEEeeeecCCCCCCCCCEEEEEEcCeeEEEeeecCCCCCcccceEEEEecCC------CCCCeEEEEEEEccccccCC
Q 009539 414 LVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEP------PTNDRLHVEVCSVSSRIGLL 487 (532)
Q Consensus 414 L~v~i~~a~~L~~~~~~dpyv~v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~~------~~~~~l~v~V~d~~~~~~~~ 487 (532)
+.|.|.+|++.+......-.+..++++....|..+.++..|.||....+.+... ..+..|+++++.-+.. -
T Consensus 2 ivl~i~egr~F~~~~~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~---~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQRPRHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGS---T 78 (340)
T ss_pred EEEEEecccCCCCCCCccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCC---C
Confidence 578899999999876677789999999999999999999999999999988642 2334799999988732 3
Q ss_pred CCCceeEEEEEechhh---hcc--ceeceEEEeCCCC------CeEEEEEEE
Q 009539 488 HPKETLGYIDINLSDV---VSN--KRINEKYHLIDSK------NGRIQIELQ 528 (532)
Q Consensus 488 ~~d~~lG~~~i~L~~l---~~~--~~~~~~~~L~~~~------~G~i~l~~~ 528 (532)
+..+.+|.+.++|+.. ..+ ....+||+|.+.+ .-+|.+.+.
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ 130 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLS 130 (340)
T ss_pred CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEE
Confidence 5788999999999998 444 3567999998762 345555543
No 250
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=96.95 E-value=0.00099 Score=66.06 Aligned_cols=126 Identities=16% Similarity=0.198 Sum_probs=92.4
Q ss_pred CCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeC--CcCCceeeEeeCCCCCceeecEEEEEeeCC-----------CC
Q 009539 251 RPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITE--DKLPSKKTTVKHKNLNPEWNEEYNFTVRDP-----------ES 317 (532)
Q Consensus 251 ~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~--~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~-----------~~ 317 (532)
.....|.+.|+++.+++-.......|-|+.+.+.- +.....+|.++++|.+|.|+|.|.+.+... ..
T Consensus 364 l~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr 443 (523)
T KOG3837|consen 364 LKDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKR 443 (523)
T ss_pred cchhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHh
Confidence 34556778888888776544223347788887632 222345899999999999999999998651 13
Q ss_pred CEEEEEEEEccCC-CCCCeeEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEE
Q 009539 318 QAVELAVYDWEQV-GKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK 383 (532)
Q Consensus 318 ~~L~v~v~d~d~~-~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~ 383 (532)
..++|++|+...+ ..|.++|.+.+.+..|.........+++... .....|.|.+.+...
T Consensus 444 ~g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DG-------RK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 444 LGKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDG-------RKAVGGKLEVKVRIR 503 (523)
T ss_pred cCeeEEEeeccccccccceeceeeeeehhhhcccchhhceecccc-------ccccCCeeEEEEEEe
Confidence 4689999998764 6688999999999999887777777776321 245678888888765
No 251
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=96.82 E-value=0.033 Score=49.59 Aligned_cols=89 Identities=22% Similarity=0.328 Sum_probs=60.5
Q ss_pred EEEEEEEEEcCCCCcCCCCCCCCcEEEEEE--eCCcCC-ceeeEeeCCCCCceeecEEEEEee--C-CCCCEEEEEEEEc
Q 009539 254 GILHVKVVKAMNLKKKDLLGASDPYVKLKI--TEDKLP-SKKTTVKHKNLNPEWNEEYNFTVR--D-PESQAVELAVYDW 327 (532)
Q Consensus 254 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~--~~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~--~-~~~~~L~v~v~d~ 327 (532)
..++|+|++|.++.-.+ .+|-||++.+ +++... ...|+.+.. .++.|||...|++. + +....|.|++|+.
T Consensus 8 ~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 8 SNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred CCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 36889999999987543 3688888865 333221 123444443 67999999999764 2 2367899999997
Q ss_pred cCCC----CCCeeEEEEEeCccC
Q 009539 328 EQVG----KHDKMGMNVVPLKEL 346 (532)
Q Consensus 328 d~~~----~d~~iG~~~i~l~~l 346 (532)
...+ ....+|.+.++|-+-
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred ecccCCCCceEEEEEEEEEEECC
Confidence 6421 124699999888763
No 252
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=96.64 E-value=0.0044 Score=67.06 Aligned_cols=115 Identities=23% Similarity=0.339 Sum_probs=83.2
Q ss_pred ccceeeeCCcccccC--CCCCcc---CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCc----CCceeeEeeC-
Q 009539 228 VANMYLWPKTLEVPI--LDPSKA---YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK----LPSKKTTVKH- 297 (532)
Q Consensus 228 ~~~~~v~P~~~~~~l--~~~~~~---~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~----~~~~~T~v~~- 297 (532)
-+++++.|..|..|= +|+... ...-.+.+.|+|+++.-|..++ ...||.|.+-+-. .+.+||++..
T Consensus 672 ~sGYllKPdfmRrpDr~fdPFse~~VdgvIA~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~ 747 (1189)
T KOG1265|consen 672 GSGYLLKPDFMRRPDRQFDPFSESPVDGVIAATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQG 747 (1189)
T ss_pred CccceeChHHhhCCCcCcCCcccCcccceEEeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccC
Confidence 467788888776653 233221 2234578999999999997765 3589999986522 1345677664
Q ss_pred CCCCceeecE-EEEE-eeCCCCCEEEEEEEEccCCCCCCeeEEEEEeCccCCCCC
Q 009539 298 KNLNPEWNEE-YNFT-VRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEE 350 (532)
Q Consensus 298 ~t~nP~Wne~-f~f~-v~~~~~~~L~v~v~d~d~~~~d~~iG~~~i~l~~l~~~~ 350 (532)
++.||+|+|+ |.|. |--++-..|+|.||+.+ ..+||+-.+|+..+..+-
T Consensus 748 n~~npvy~eepfvF~KVvLpeLA~lRiavyeEg----gK~ig~RIlpvd~l~~GY 798 (1189)
T KOG1265|consen 748 NSFNPVYEEEPFVFRKVVLPELASLRIAVYEEG----GKFIGQRILPVDGLNAGY 798 (1189)
T ss_pred CCCCcccccCCcccceecccchhheeeeeeccC----CceeeeeccchhcccCcc
Confidence 7999999965 7775 44455678999999975 569999999999999874
No 253
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=96.33 E-value=0.028 Score=50.06 Aligned_cols=91 Identities=29% Similarity=0.410 Sum_probs=64.0
Q ss_pred eEEEEEEeeeecCCCCCCCCCEEEEEE--cCeeE----EEeeecCCCCCcccceEEEEec--CCCCCCeEEEEEEEcccc
Q 009539 412 GLLVVIVHEAQDVEGKHHTNPYARILF--RGEER----KTKHVKKNRDPRWEEEFQFMLE--EPPTNDRLHVEVCSVSSR 483 (532)
Q Consensus 412 g~L~v~i~~a~~L~~~~~~dpyv~v~~--~~~~~----kT~vv~~t~nP~w~e~f~f~v~--~~~~~~~l~v~V~d~~~~ 483 (532)
..++|.|+++.+++-....|-||++.+ +++.. .|+.+.. .++.|||-.+|++. +.+.+..|.++||+....
T Consensus 8 ~~~~v~i~~~~~~~~~~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~~~ 86 (158)
T cd08398 8 SNLRIKILCATYVNVNDIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVKGR 86 (158)
T ss_pred CCeEEEEEeeccCCCCCcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEecc
Confidence 467899999999887666788888754 55432 4554443 78999999888764 455667999999997642
Q ss_pred ccCCCCCceeEEEEEechhh
Q 009539 484 IGLLHPKETLGYIDINLSDV 503 (532)
Q Consensus 484 ~~~~~~d~~lG~~~i~L~~l 503 (532)
.+.-.....+|.+.++|-+-
T Consensus 87 ~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 87 KGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred cCCCCceEEEEEEEEEEECC
Confidence 10001235799999999874
No 254
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=96.28 E-value=0.24 Score=43.28 Aligned_cols=124 Identities=24% Similarity=0.336 Sum_probs=80.3
Q ss_pred CeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeC-CCCCceeecEEEEEeeC--------CCCCEEEE
Q 009539 252 PVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKH-KNLNPEWNEEYNFTVRD--------PESQAVEL 322 (532)
Q Consensus 252 ~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~-~t~nP~Wne~f~f~v~~--------~~~~~L~v 322 (532)
..-.+.|++++..+++. ....-|++...+.......+|.... .+..-.|||+|.+.+.- .....+.|
T Consensus 5 ~kf~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~ 80 (143)
T PF10358_consen 5 VKFQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKF 80 (143)
T ss_pred eeEEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEE
Confidence 34568899999998876 2234455554443321123444333 34456899999987641 22457889
Q ss_pred EEEEccCCCCCCeeEEEEEeCccCCCC--CCeEEEEecccccccCCCCCCccccEEEEEEEEEEccC
Q 009539 323 AVYDWEQVGKHDKMGMNVVPLKELTPE--EPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKE 387 (532)
Q Consensus 323 ~v~d~d~~~~d~~iG~~~i~l~~l~~~--~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~ 387 (532)
.|+.....++...+|.+.++|.+.... ......+.+.. .......|++++.+.+..+
T Consensus 81 ~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~--------~~~~~a~L~isi~~~~~~~ 139 (143)
T PF10358_consen 81 SVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKK--------CKKSNATLSISISLSELRE 139 (143)
T ss_pred EEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCcc--------CCCCCcEEEEEEEEEECcc
Confidence 999875434446999999999999875 34455555532 1356778999999887643
No 255
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=95.86 E-value=0.052 Score=49.26 Aligned_cols=92 Identities=20% Similarity=0.399 Sum_probs=65.0
Q ss_pred eEEEEEEeeeecCCC-CCCCCCEEEE--EEcCee----EEEeeecCCCCCcccceEEEEec--CCCCCCeEEEEEEEccc
Q 009539 412 GLLVVIVHEAQDVEG-KHHTNPYARI--LFRGEE----RKTKHVKKNRDPRWEEEFQFMLE--EPPTNDRLHVEVCSVSS 482 (532)
Q Consensus 412 g~L~v~i~~a~~L~~-~~~~dpyv~v--~~~~~~----~kT~vv~~t~nP~w~e~f~f~v~--~~~~~~~l~v~V~d~~~ 482 (532)
..++|+|+++.++.. ....+-||++ +.|++. ..|+.+.-..++.|||.++|.+. +.+.+..|.+.||+...
T Consensus 8 ~~f~i~i~~~~~~~~~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~~ 87 (173)
T cd08693 8 EKFSITLHKISNLNAAERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVSK 87 (173)
T ss_pred CCEEEEEEEeccCccCCCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEecc
Confidence 367899999999986 4456677776 445554 36666665678999999888664 55666799999998753
Q ss_pred cc-c-----------CCCCCceeEEEEEechhh
Q 009539 483 RI-G-----------LLHPKETLGYIDINLSDV 503 (532)
Q Consensus 483 ~~-~-----------~~~~d~~lG~~~i~L~~l 503 (532)
.. + .-+.+..||.+.++|-+-
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~ 120 (173)
T cd08693 88 KAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY 120 (173)
T ss_pred cccccccccccccccccCcceEEEEEeEEEEcc
Confidence 20 0 001246999999999874
No 256
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=95.84 E-value=0.19 Score=44.78 Aligned_cols=92 Identities=25% Similarity=0.399 Sum_probs=60.8
Q ss_pred EEEEEEEEcCCCCcCCCCCCCCcEEEEEE--eCCcC-CceeeEeeCCCCCceeecEEEEEee--C-CCCCEEEEEEEEcc
Q 009539 255 ILHVKVVKAMNLKKKDLLGASDPYVKLKI--TEDKL-PSKKTTVKHKNLNPEWNEEYNFTVR--D-PESQAVELAVYDWE 328 (532)
Q Consensus 255 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~--~~~~~-~~~~T~v~~~t~nP~Wne~f~f~v~--~-~~~~~L~v~v~d~d 328 (532)
.++|++....++...+ ....+-|+++.+ +++.. ....|.......++.|||...|++. + +....|.+.+|+.+
T Consensus 9 ~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 9 NLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 5678888888776521 234566777755 33322 2223433333478999999999854 2 33678999999987
Q ss_pred CCC--CCCeeEEEEEeCccCC
Q 009539 329 QVG--KHDKMGMNVVPLKELT 347 (532)
Q Consensus 329 ~~~--~d~~iG~~~i~l~~l~ 347 (532)
..+ ++..||.+.++|-+-.
T Consensus 88 ~~~~~~~~~iG~~~~~lFd~~ 108 (156)
T cd08380 88 EPGSKKEVPLGWVNVPLFDYK 108 (156)
T ss_pred cCCCCcceEEEEEeEEeEccc
Confidence 554 4679999999987753
No 257
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=95.66 E-value=0.15 Score=44.91 Aligned_cols=128 Identities=14% Similarity=0.189 Sum_probs=87.1
Q ss_pred CeEEEEEEEEEcCCCCcCCCC--CCCCcEEEE--EEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCC-----------
Q 009539 252 PVGILHVKVVKAMNLKKKDLL--GASDPYVKL--KITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE----------- 316 (532)
Q Consensus 252 ~~g~L~V~v~~A~~L~~~d~~--g~~dpyv~v--~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~----------- 316 (532)
-...|.++|..++-....-.. |..+.-..+ .+++++ ++|+.+..+.+|.|+|.|-|.+....
T Consensus 7 ~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QR---F~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~ll 83 (156)
T PF15627_consen 7 GRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQR---FRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLL 83 (156)
T ss_pred CceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCce---EecCCcccccCCCCCCcEEEEecccccccccchhHhh
Confidence 345789999988865432111 344444444 445555 48999999999999999999987432
Q ss_pred --CCEEEEEEEEccCCCCCCeeEEEEEeCccCCCCCCe--EEEEecccccccCCCCCCccccEEEEEEEEEEcc
Q 009539 317 --SQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPS--VKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFK 386 (532)
Q Consensus 317 --~~~L~v~v~d~d~~~~d~~iG~~~i~l~~l~~~~~~--~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~ 386 (532)
.+.+.+.|--.|..+...++|+-.++=..+...... ....++... . .......|-|.++++..|..
T Consensus 84 s~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~-~---~e~kv~~GiL~l~lELlP~~ 153 (156)
T PF15627_consen 84 SISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGV-G---PESKVPVGILDLRLELLPNL 153 (156)
T ss_pred cCCCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEecc-C---CCCccceeEEEEEEEeecCC
Confidence 356788888877777778999988887777655443 445555321 1 11245889999999998853
No 258
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=95.43 E-value=0.073 Score=48.31 Aligned_cols=91 Identities=18% Similarity=0.288 Sum_probs=60.8
Q ss_pred EEEEEEEEEcCCCCcCCCCCCCCcEEEEEE--eCCcCC-ceeeEeeCCCCCceeecEEEEEee--C-CCCCEEEEEEEEc
Q 009539 254 GILHVKVVKAMNLKKKDLLGASDPYVKLKI--TEDKLP-SKKTTVKHKNLNPEWNEEYNFTVR--D-PESQAVELAVYDW 327 (532)
Q Consensus 254 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~--~~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~--~-~~~~~L~v~v~d~ 327 (532)
..++|+|+.+.++.-.+ ...+-||++.+ +++... ...|+....+.++.|||.+.|++. + |....|.|.+|+.
T Consensus 8 ~~f~i~i~~~~~~~~~~--~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 8 EKFSITLHKISNLNAAE--RTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CCEEEEEEEeccCccCC--CCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 36899999999998622 34567777644 443331 235555555677999999999764 2 3367899999997
Q ss_pred cCCC----------------CCCeeEEEEEeCccC
Q 009539 328 EQVG----------------KHDKMGMNVVPLKEL 346 (532)
Q Consensus 328 d~~~----------------~d~~iG~~~i~l~~l 346 (532)
.... .+..||.+.++|-+-
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~ 120 (173)
T cd08693 86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY 120 (173)
T ss_pred cccccccccccccccccccCcceEEEEEeEEEEcc
Confidence 5322 135788887776653
No 259
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=95.38 E-value=0.45 Score=41.55 Aligned_cols=115 Identities=20% Similarity=0.316 Sum_probs=77.1
Q ss_pred eEEEEEEeeeecCCCCCCCCCEEEEEEcCee---EEEeeec-CCCCCcccceEEEEecCC---C----CCCeEEEEEEEc
Q 009539 412 GLLVVIVHEAQDVEGKHHTNPYARILFRGEE---RKTKHVK-KNRDPRWEEEFQFMLEEP---P----TNDRLHVEVCSV 480 (532)
Q Consensus 412 g~L~v~i~~a~~L~~~~~~dpyv~v~~~~~~---~kT~vv~-~t~nP~w~e~f~f~v~~~---~----~~~~l~v~V~d~ 480 (532)
-.+.++|++..+++. ....-||+...+++. .+|.... ....-.|||.|.+.+.-. . ....+.+.|+..
T Consensus 7 f~~~l~i~~l~~~p~-~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~~ 85 (143)
T PF10358_consen 7 FQFDLTIHELENLPS-SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVFEV 85 (143)
T ss_pred EEEEEEEEEeECcCC-CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEEEe
Confidence 456788889888887 233445555555543 3443332 455667999999987531 1 122688888877
Q ss_pred cccccCCCCCceeEEEEEechhhhcc--ceeceEEEeCCC--CCeEEEEEEEEEe
Q 009539 481 SSRIGLLHPKETLGYIDINLSDVVSN--KRINEKYHLIDS--KNGRIQIELQWRT 531 (532)
Q Consensus 481 ~~~~~~~~~d~~lG~~~i~L~~l~~~--~~~~~~~~L~~~--~~G~i~l~~~w~p 531 (532)
... +....+|.+.|+|.+.... +.....++|... .+..+++++++.+
T Consensus 86 ~~~----~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~~~~a~L~isi~~~~ 136 (143)
T PF10358_consen 86 DGS----GKKKVLGKVSINLAEYANEDEEPITVRLLLKKCKKSNATLSISISLSE 136 (143)
T ss_pred cCC----CccceEEEEEEEHHHhhCcCCCcEEEEEeCccCCCCCcEEEEEEEEEE
Confidence 421 1236999999999999984 466788998775 3578888888765
No 260
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=95.28 E-value=0.39 Score=43.62 Aligned_cols=73 Identities=19% Similarity=0.243 Sum_probs=46.1
Q ss_pred EEEEEEEEcCCCCcCCCCCCCCcEEEEEE--eCCcCCceeeEeeCCCCCceeecEEEEEee--C-CCCCEEEEEEEEcc
Q 009539 255 ILHVKVVKAMNLKKKDLLGASDPYVKLKI--TEDKLPSKKTTVKHKNLNPEWNEEYNFTVR--D-PESQAVELAVYDWE 328 (532)
Q Consensus 255 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~--~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~--~-~~~~~L~v~v~d~d 328 (532)
.++|+|..+.++ ..+......-||++.+ ++......+|+.+..+.++.|||...|++. + +....|.|.||+..
T Consensus 11 ~friki~~~~~~-~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 11 KFRVKILGIDIP-VLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CEEEEEEeeccc-CcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 567788887633 3222222335666533 333333336677677778999999888865 2 23678999999974
No 261
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=94.81 E-value=0.27 Score=38.80 Aligned_cols=84 Identities=20% Similarity=0.330 Sum_probs=59.7
Q ss_pred CCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCCCeeEEEEEeCccCCCCCCeEE
Q 009539 275 SDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVK 354 (532)
Q Consensus 275 ~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~ 354 (532)
++..+.+.+++..+ .+|.-+ .-.+..|++.|.+.+.. +..|+|.||-.|- ..+.|...+.|++... ..
T Consensus 9 ~eV~avLklDn~~V--gqT~Wk-~~s~q~WDQ~Fti~LdR--sRELEI~VywrD~---RslCav~~lrLEd~~~----~~ 76 (98)
T cd08687 9 SEVSAVLKLDNTVV--GQTQWK-PKSNQAWDQSFTLELER--SRELEIAVYWRDW---RSLCAVKFLKLEDERH----EV 76 (98)
T ss_pred cceEEEEEEcCeEE--eecccc-ccccccccceeEEEeec--ccEEEEEEEEecc---hhhhhheeeEhhhhcc----cc
Confidence 67788888886554 466553 33578899999999964 5899999998763 4577888888887322 22
Q ss_pred EEecccccccCCCCCCccccEEEEEEEE
Q 009539 355 TLDLLKNMDLNDGQNEKSRGQLVVEFIY 382 (532)
Q Consensus 355 ~l~l~~~~~~~~~~~~~~~G~l~l~l~~ 382 (532)
.+ +-.+.|.+..+++|
T Consensus 77 ~~------------~lepqg~l~~ev~f 92 (98)
T cd08687 77 QL------------DMEPQLCLVAELTF 92 (98)
T ss_pred ee------------ccccccEEEEEEEe
Confidence 22 24578888888887
No 262
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=94.80 E-value=0.074 Score=51.24 Aligned_cols=118 Identities=18% Similarity=0.280 Sum_probs=77.5
Q ss_pred CCCeEEEEEEEEEcCCCCcCCC-CC-CCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEc
Q 009539 250 RRPVGILHVKVVKAMNLKKKDL-LG-ASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDW 327 (532)
Q Consensus 250 ~~~~g~L~V~v~~A~~L~~~d~-~g-~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~ 327 (532)
....|+|.+++.++++|+.... .| .-+-||++..+.+. ..||.+......=.|.|+|+..+.+. ..+.+-||.+
T Consensus 47 ~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh--~aRt~vrs~~~~f~w~e~F~~Dvv~~--~vl~~lvySW 122 (442)
T KOG1452|consen 47 VSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQH--PARTRVRSSGPGFAWAEDFKHDVVNI--EVLHYLVYSW 122 (442)
T ss_pred ecccceEEEEEecccccccChhccCceeeeeeeeeecccC--ccccccccCCCCccchhhceeecccc--eeeeEEEeec
Confidence 3467999999999999975432 23 45889999987543 34676665555567999999988763 6788899999
Q ss_pred cCCCCCCeeEEEEEeCccCCCC-CCeEEEEecccccccCCCCCCccccEEEEEEEEE
Q 009539 328 EQVGKHDKMGMNVVPLKELTPE-EPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK 383 (532)
Q Consensus 328 d~~~~d~~iG~~~i~l~~l~~~-~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~ 383 (532)
+.-.++++.-.-.+.+..+... ..+..-+. -+++|++.+++.+.
T Consensus 123 ~pq~RHKLC~~g~l~~~~v~rqspd~~~Al~------------lePrgq~~~r~~~~ 167 (442)
T KOG1452|consen 123 PPQRRHKLCHLGLLEAFVVDRQSPDRVVALY------------LEPRGQPPLRLPLA 167 (442)
T ss_pred CchhhccccccchhhhhhhhhcCCcceeeee------------cccCCCCceecccC
Confidence 8766677643333433333322 12222222 35677777777554
No 263
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=94.51 E-value=0.14 Score=46.34 Aligned_cols=93 Identities=18% Similarity=0.225 Sum_probs=62.9
Q ss_pred EEEEEEEEEcCCCCcCCCCCCCCcEEEEEE--eCCcCCc-eeeEeeC----CCCCceeecEEEEEeeC---CCCCEEEEE
Q 009539 254 GILHVKVVKAMNLKKKDLLGASDPYVKLKI--TEDKLPS-KKTTVKH----KNLNPEWNEEYNFTVRD---PESQAVELA 323 (532)
Q Consensus 254 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~--~~~~~~~-~~T~v~~----~t~nP~Wne~f~f~v~~---~~~~~L~v~ 323 (532)
..+.|+|..+.+++........|-|+.+.+ +++.... ..|+... -...+.|||...|++.- +....|.|.
T Consensus 8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it 87 (171)
T cd04012 8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT 87 (171)
T ss_pred ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence 468899999999988764445788888865 4333211 1333211 12357799999988642 336789999
Q ss_pred EEEccCCC---------CCCeeEEEEEeCccC
Q 009539 324 VYDWEQVG---------KHDKMGMNVVPLKEL 346 (532)
Q Consensus 324 v~d~d~~~---------~d~~iG~~~i~l~~l 346 (532)
+|+....+ .+..||.+.++|-+-
T Consensus 88 l~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 88 LYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 99976543 356899999888764
No 264
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=94.42 E-value=0.21 Score=44.47 Aligned_cols=90 Identities=23% Similarity=0.376 Sum_probs=60.9
Q ss_pred eEEEEEEeeeecCCC--CCCCCCEEEEE--EcCee----EEEeeecCCCCCcccceEEEEe--cCCCCCCeEEEEEEEcc
Q 009539 412 GLLVVIVHEAQDVEG--KHHTNPYARIL--FRGEE----RKTKHVKKNRDPRWEEEFQFML--EEPPTNDRLHVEVCSVS 481 (532)
Q Consensus 412 g~L~v~i~~a~~L~~--~~~~dpyv~v~--~~~~~----~kT~vv~~t~nP~w~e~f~f~v--~~~~~~~~l~v~V~d~~ 481 (532)
..++|.++.+.++.. ....+-||++. .|++. ..|.....+.++.|||..+|++ .+.+.+..|.+.||+..
T Consensus 8 ~~~~i~i~~~~~~~~~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 8 FNLRIKIHGITNINLLDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CCeEEEEEeeccccccCCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 356777777777654 23455666664 35542 2444444457899999988875 45566679999999986
Q ss_pred ccccCCCCCceeEEEEEechhh
Q 009539 482 SRIGLLHPKETLGYIDINLSDV 503 (532)
Q Consensus 482 ~~~~~~~~d~~lG~~~i~L~~l 503 (532)
... -..+..||.+.++|-+-
T Consensus 88 ~~~--~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 88 EPG--SKKEVPLGWVNVPLFDY 107 (156)
T ss_pred cCC--CCcceEEEEEeEEeEcc
Confidence 420 01357999999999874
No 265
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=94.40 E-value=0.072 Score=58.08 Aligned_cols=87 Identities=21% Similarity=0.273 Sum_probs=66.9
Q ss_pred CceEEEEEEeeeecCCCCCCCCCEEEEEEcC-------eeEEEeeec-CCCCCcccc-eEEEEecCCCCCCeEEEEEEEc
Q 009539 410 GGGLLVVIVHEAQDVEGKHHTNPYARILFRG-------EERKTKHVK-KNRDPRWEE-EFQFMLEEPPTNDRLHVEVCSV 480 (532)
Q Consensus 410 ~~g~L~v~i~~a~~L~~~~~~dpyv~v~~~~-------~~~kT~vv~-~t~nP~w~e-~f~f~v~~~~~~~~l~v~V~d~ 480 (532)
-++.+.|+|++++=|..+ ....||+|.+-| +.++|+++. ++.||+|+| .|.|.---.+.-..|.|.|+++
T Consensus 701 IA~t~sV~VISgqFLSdr-kvgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavyeE 779 (1189)
T KOG1265|consen 701 IAATLSVTVISGQFLSDR-KVGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYEE 779 (1189)
T ss_pred EEeeEEEEEEeeeecccc-ccCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeecc
Confidence 456789999999977653 556999999854 345888877 588999996 5777643333446899999998
Q ss_pred cccccCCCCCceeEEEEEechhhhc
Q 009539 481 SSRIGLLHPKETLGYIDINLSDVVS 505 (532)
Q Consensus 481 ~~~~~~~~~d~~lG~~~i~L~~l~~ 505 (532)
+ ..+||+=.++++.+..
T Consensus 780 g--------gK~ig~RIlpvd~l~~ 796 (1189)
T KOG1265|consen 780 G--------GKFIGQRILPVDGLNA 796 (1189)
T ss_pred C--------CceeeeeccchhcccC
Confidence 5 4899999999988755
No 266
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=94.31 E-value=0.14 Score=45.73 Aligned_cols=74 Identities=20% Similarity=0.332 Sum_probs=52.9
Q ss_pred CCCCcEEEEEEe--CCcCC-ceeeEeeCCCCCceeecEEEEEeeC---CCCCEEEEEEEEccCCCCCCeeEEEEEeCccC
Q 009539 273 GASDPYVKLKIT--EDKLP-SKKTTVKHKNLNPEWNEEYNFTVRD---PESQAVELAVYDWEQVGKHDKMGMNVVPLKEL 346 (532)
Q Consensus 273 g~~dpyv~v~~~--~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~~---~~~~~L~v~v~d~d~~~~d~~iG~~~i~l~~l 346 (532)
..+|-||++.+- +.... .-+|+.+.-+..+.|||...|++.- +....|.|+|||.+..++...+|.++++|-+-
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 446788888663 32221 1256666666778999999998752 23678999999987666677999999998764
No 267
>KOG3532 consensus Predicted protein kinase [General function prediction only]
Probab=94.25 E-value=0.11 Score=55.07 Aligned_cols=218 Identities=17% Similarity=0.271 Sum_probs=130.0
Q ss_pred CCCCceeCCCCcchHH---------HHHHHHhhchhH--HHHHH----HHHHHHHHHHHHhc-CCCceeeeEEEeEeeCC
Q 009539 58 EIPLWVKCPDYDRVDW---------LNKFLELMWPYL--DKAIC----KTAKNIAKPIIAEQ-IPKYKIESVEFETLTLG 121 (532)
Q Consensus 58 ~~p~w~~~~d~E~~~W---------lN~~l~~~Wp~~--~~~~~----~~i~~~~~~~l~~~-~p~~~i~~~~~~~~~lG 121 (532)
+.|.|..+- |.-+| +|.++.....-. ..+.. +.....++.++... .-.. +..+++.++-||
T Consensus 81 ~~~t~~~~~--~~~~~~~~AS~c~s~~~V~h~lfqE~k~a~~~r~w~~~Rl~~e~~~~~~~~~~g~L-L~~~~i~elElg 157 (1051)
T KOG3532|consen 81 ELRTFLKSG--EDGQGISKASSCNSISLVLHMLFQEHKDTRALRRWVHKRLQMEMNDITTRSAAGRL-LQEIRIRELELG 157 (1051)
T ss_pred ccccccccc--ccchhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhh-hcccceehhhhc
Confidence 588998542 33344 455555544311 12222 22233333444432 2333 789999999999
Q ss_pred CCCCeEeeEEEEecC------------C-------------ceEEEEeeeeEeCCCceEEEEEE-eeeEEEEEEEEEEEE
Q 009539 122 TLPPTFQGMKVYVTD------------E-------------KELIMEPCLKWAANPNVTIGVKA-FGLKATVQVVDLQVF 175 (532)
Q Consensus 122 ~~~p~i~~v~~~~~~------------~-------------~~~~ld~~~~~~~~~~i~l~~~~-~~~~~~v~v~~~~~~ 175 (532)
.+.|.+++.+++.-+ + ..+.+=.++.|.|+.--++.+.. .+.+..+.|+-.+++
T Consensus 158 ~~f~~~~sLtvH~i~~~s~~l~~~q~sk~R~~~~~~~~~~i~~~~~~ldidy~G~fTtsid~~s~~~kk~S~~iKl~~l~ 237 (1051)
T KOG3532|consen 158 TKFMTINSLRVHSVENLSEFLKYAQTSKHRFILSPVNVYCIQKIVFILDIDYSGGFTTSIDVSTIIAKKASLSVKITKLT 237 (1051)
T ss_pred cccccccceEEeecccHHHHHHhhhhhhhhcccCCcceecccccccccccccCCCcceecCCccccccCCceeEEEEEec
Confidence 999999999998611 1 12345567888888766666655 334455566678999
Q ss_pred EEeEEEecCCCCCCCeeeEEEEEccCCceEEEEEEE--cccccc-CCchh-hhhhh--ccceeeeCCcc-------cccC
Q 009539 176 AQPRITLKPLVPAFPCFANIYVSLMEKPHVDFGLKL--VGADLM-SIPGL-YRFVQ--VANMYLWPKTL-------EVPI 242 (532)
Q Consensus 176 g~~rv~l~pl~~~~P~~~~v~~sf~~~P~id~~~~~--~g~~~~-~~P~l-~~~i~--~~~~~v~P~~~-------~~~l 242 (532)
|.+|+.+. .-....++++|+..|.+...++. .|..+. .||.+ +.-+. +...-.||++- ..|+
T Consensus 238 Gm~r~~~~-----r~py~hw~~sf~G~P~~e~di~s~~qg~qLQ~~I~q~i~~~ir~~~~rKhT~pnyK~ry~pff~~~~ 312 (1051)
T KOG3532|consen 238 GMVRVILS-----RQPYHHWTFSFVGQPIFETDINSQIQGHQLQRLIPQIIKEAIRRSLQRKHTWPNYKIRYRPFFPNPI 312 (1051)
T ss_pred cceeEEEE-----eccceeeeeeeccCchhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcchhhhccccccCcc
Confidence 99999886 23346789999999987655532 222222 24442 22222 23334455531 1111
Q ss_pred CCCC-----ccCCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeC
Q 009539 243 LDPS-----KAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITE 285 (532)
Q Consensus 243 ~~~~-----~~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~ 285 (532)
.... .---.+.|.+.|++.++..|... .++..-||.+.+.+
T Consensus 313 ~~a~~~~~s~~~i~~~G~~~V~~lE~srL~~~--~k~~e~Yct~T~e~ 358 (1051)
T KOG3532|consen 313 FQASPPINSFTHIKMEGGIEVTVLECSRLKDK--NKNYEVYCTVTIES 358 (1051)
T ss_pred cccCcchhhhhheeccCceeEeehhhhhhhcc--CCccceeeeccccC
Confidence 1111 11224679999999999888654 47889999998864
No 268
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=93.77 E-value=0.27 Score=43.07 Aligned_cols=55 Identities=22% Similarity=0.409 Sum_probs=40.5
Q ss_pred eeEeeCCC-CCceeecEEEEEee--C-CCCCEEEEEEEEccCCCCC----CeeEEEEEeCccC
Q 009539 292 KTTVKHKN-LNPEWNEEYNFTVR--D-PESQAVELAVYDWEQVGKH----DKMGMNVVPLKEL 346 (532)
Q Consensus 292 ~T~v~~~t-~nP~Wne~f~f~v~--~-~~~~~L~v~v~d~d~~~~d----~~iG~~~i~l~~l 346 (532)
.|....-+ .++.|||...|++. + |....|.|.||..+..... ..||.+.++|-+.
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence 55555555 79999999999864 2 3477999999998865555 6999999998776
No 269
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=93.70 E-value=0.92 Score=35.87 Aligned_cols=83 Identities=16% Similarity=0.181 Sum_probs=57.4
Q ss_pred CCCEEEEEEcCeeE-EEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCCCCCceeEEEEEechhhhccce
Q 009539 430 TNPYARILFRGEER-KTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKR 508 (532)
Q Consensus 430 ~dpyv~v~~~~~~~-kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~ 508 (532)
.+..+.+.+.++.. +|.-. ...+..|++.|.+.+.. ...+.|.|+-+|- ...-|-.-+.|.+...
T Consensus 9 ~eV~avLklDn~~VgqT~Wk-~~s~q~WDQ~Fti~LdR---sRELEI~VywrD~-------RslCav~~lrLEd~~~--- 74 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWK-PKSNQAWDQSFTLELER---SRELEIAVYWRDW-------RSLCAVKFLKLEDERH--- 74 (98)
T ss_pred cceEEEEEEcCeEEeecccc-ccccccccceeEEEeec---ccEEEEEEEEecc-------hhhhhheeeEhhhhcc---
Confidence 56778888887665 66543 34678899999999975 3689999998863 3566767778887322
Q ss_pred eceEEEeCCCCCeEEEEEEEE
Q 009539 509 INEKYHLIDSKNGRIQIELQW 529 (532)
Q Consensus 509 ~~~~~~L~~~~~G~i~l~~~w 529 (532)
...+.-.++|.+..++.|
T Consensus 75 ---~~~~~lepqg~l~~ev~f 92 (98)
T cd08687 75 ---EVQLDMEPQLCLVAELTF 92 (98)
T ss_pred ---cceeccccccEEEEEEEe
Confidence 222333357787777665
No 270
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=93.17 E-value=0.36 Score=43.11 Aligned_cols=71 Identities=15% Similarity=0.283 Sum_probs=52.2
Q ss_pred CCCCEEEEEE--cCee----EEEeeecCCCCCcccceEEEEec--CCCCCCeEEEEEEEccccccCCCCCceeEEEEEec
Q 009539 429 HTNPYARILF--RGEE----RKTKHVKKNRDPRWEEEFQFMLE--EPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINL 500 (532)
Q Consensus 429 ~~dpyv~v~~--~~~~----~kT~vv~~t~nP~w~e~f~f~v~--~~~~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L 500 (532)
.++-||++.+ +++. ..|+.+.-+..+.|||-.+|++. +.+.+..|.|+||+.... +....+|.++++|
T Consensus 29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~----~~~~~vg~~~~~l 104 (159)
T cd08397 29 NSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGT----GKAVPFGGTTLSL 104 (159)
T ss_pred CCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCC----CCceEEEEEEEee
Confidence 4667777754 4443 26666666778899999888875 445667999999998642 3467999999999
Q ss_pred hhh
Q 009539 501 SDV 503 (532)
Q Consensus 501 ~~l 503 (532)
-+-
T Consensus 105 Fd~ 107 (159)
T cd08397 105 FNK 107 (159)
T ss_pred ECC
Confidence 875
No 271
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=92.99 E-value=1.3 Score=39.98 Aligned_cols=72 Identities=17% Similarity=0.317 Sum_probs=54.5
Q ss_pred CCCcEEEEEEeCCcCCceeeEeeC--CCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCCCeeEEEEEeCccCCCC
Q 009539 274 ASDPYVKLKITEDKLPSKKTTVKH--KNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPE 349 (532)
Q Consensus 274 ~~dpyv~v~~~~~~~~~~~T~v~~--~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~iG~~~i~l~~l~~~ 349 (532)
+..-|+++.++++.+ .+|+... ....-.+||.|.+.+... -..|.++||.... ..+..|+++.+|+-.....
T Consensus 36 ~~~~~ikl~~N~k~V--~~T~~~~l~~dF~v~f~~~f~v~i~~~-Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~~~ 109 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEV--SRTRSRPLWSDFRVHFNEIFNVQITRW-PESIKLEIYEKSG-LSDRLLAEVFVPVPGSTVH 109 (168)
T ss_pred heeEEEEEEECCEEE--EeeeeEecCCCeEEeccCEEEEEEecC-CCEEEEEEEEccC-ccceEEEEEEeeCCCCccc
Confidence 456799999998765 3555433 333456889999999774 5899999999886 6788999999998765543
No 272
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=92.68 E-value=0.93 Score=41.15 Aligned_cols=91 Identities=12% Similarity=0.141 Sum_probs=57.6
Q ss_pred EEEEEEeeeecCCCCCC--CCCEEEEE--EcCee---EEEeeecCCCCCcccceEEEEec--CCCCCCeEEEEEEEcccc
Q 009539 413 LLVVIVHEAQDVEGKHH--TNPYARIL--FRGEE---RKTKHVKKNRDPRWEEEFQFMLE--EPPTNDRLHVEVCSVSSR 483 (532)
Q Consensus 413 ~L~v~i~~a~~L~~~~~--~dpyv~v~--~~~~~---~kT~vv~~t~nP~w~e~f~f~v~--~~~~~~~l~v~V~d~~~~ 483 (532)
.++|+|+++.++..... ..-||++. .+++. .+|....-+.++.|||-.+|.+. +.+....|.+.||+....
T Consensus 11 ~friki~~~~~~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~~ 90 (178)
T cd08399 11 KFRVKILGIDIPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKAP 90 (178)
T ss_pred CEEEEEEeecccCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEecC
Confidence 56677777764432222 33455553 34432 26666666788999998888775 445667999999986321
Q ss_pred c------c------CCCCCceeEEEEEechhh
Q 009539 484 I------G------LLHPKETLGYIDINLSDV 503 (532)
Q Consensus 484 ~------~------~~~~d~~lG~~~i~L~~l 503 (532)
. | .-..+..||.+.+.|-+-
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~ 122 (178)
T cd08399 91 ALSSKKSAESPSSESKGKHQLLYYVNLLLIDH 122 (178)
T ss_pred cccccccccccccccccccceEEEEEEEEEcC
Confidence 0 0 001367899999999874
No 273
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=92.44 E-value=1.2 Score=40.63 Aligned_cols=57 Identities=18% Similarity=0.335 Sum_probs=42.4
Q ss_pred CceeeEeeCCCCCceeecEEEEEeeCC--CCCEEEEEEEEccCCC--CCCeeEEEEEeCcc
Q 009539 289 PSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYDWEQVG--KHDKMGMNVVPLKE 345 (532)
Q Consensus 289 ~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d~d~~~--~d~~iG~~~i~l~~ 345 (532)
..++|.+...+.+|.|+|++.+.++.. ....|.|++++..... ....+|.+.+||-+
T Consensus 53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~ 113 (189)
T cd08695 53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR 113 (189)
T ss_pred ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence 346899999999999999999988643 3668999888754321 12578988888843
No 274
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=92.15 E-value=2.6 Score=38.01 Aligned_cols=96 Identities=16% Similarity=0.330 Sum_probs=66.5
Q ss_pred CCCCEEEEEEcCeeE-EEeeecC--CCCCcccceEEEEecCCCCCCeEEEEEEEccccccCCCCCceeEEEEEechhhhc
Q 009539 429 HTNPYARILFRGEER-KTKHVKK--NRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVS 505 (532)
Q Consensus 429 ~~dpyv~v~~~~~~~-kT~vv~~--t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~ 505 (532)
...-|+++.++++.. +|+...= .-.-.|+|.|.+.+...| +.|.++||.... ..+..|+++.+++-....
T Consensus 36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~P--esi~l~i~E~~~-----~~~~~la~v~vpvP~~~~ 108 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWP--ESIKLEIYEKSG-----LSDRLLAEVFVPVPGSTV 108 (168)
T ss_pred heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCC--CEEEEEEEEccC-----ccceEEEEEEeeCCCCcc
Confidence 456799999999876 5554432 223347999999998754 689999998863 468999999999765443
Q ss_pred c--ce--eceEEEeCCC------------------------CCeEEEEEEEEEe
Q 009539 506 N--KR--INEKYHLIDS------------------------KNGRIQIELQWRT 531 (532)
Q Consensus 506 ~--~~--~~~~~~L~~~------------------------~~G~i~l~~~w~p 531 (532)
. .. ..++|.+... -+|+|.+++.|-.
T Consensus 109 ~~~~~~~~~~~~eFsS~~~~~~~~~~vg~~~~~~~~~~~~~tsG~l~~~~sW~~ 162 (168)
T PF15625_consen 109 HTSTDNVPLEEYEFSSDQPVHPDHEGVGSFEADGSNSTSLFTSGSLSYSVSWAV 162 (168)
T ss_pred cccccCCceEeEEEcCCceeeccceeccccccCCCCcccceeeeEEEEecEEeC
Confidence 2 11 3445554210 1599999999863
No 275
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=91.90 E-value=0.35 Score=46.78 Aligned_cols=113 Identities=16% Similarity=0.155 Sum_probs=75.3
Q ss_pred CCceEEEEEEeeeecCCCC----C-CCCCEEEEEEcCeeE-EEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccc
Q 009539 409 AGGGLLVVIVHEAQDVEGK----H-HTNPYARILFRGEER-KTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSS 482 (532)
Q Consensus 409 ~~~g~L~v~i~~a~~L~~~----~-~~dpyv~v~~~~~~~-kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~ 482 (532)
..+|+|.+++..+|+|.-. | .-+-||.+....+.. +|.+......-.|.|.|+..+.+. +.+.+-||.++.
T Consensus 48 s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~~---~vl~~lvySW~p 124 (442)
T KOG1452|consen 48 SSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVNI---EVLHYLVYSWPP 124 (442)
T ss_pred cccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeecccc---eeeeEEEeecCc
Confidence 3589999999999999642 2 456788888866543 666666666667999999988754 678888888864
Q ss_pred cccCCCCCceeEEEEEechhhhccceeceEEEeCCCCCeEEEEEEEE
Q 009539 483 RIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIELQW 529 (532)
Q Consensus 483 ~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~l~~~w 529 (532)
.. -.+=+.+| .+.+.. +.++..++.+-|.-.++|++.+++.+
T Consensus 125 q~--RHKLC~~g--~l~~~~-v~rqspd~~~Al~lePrgq~~~r~~~ 166 (442)
T KOG1452|consen 125 QR--RHKLCHLG--LLEAFV-VDRQSPDRVVALYLEPRGQPPLRLPL 166 (442)
T ss_pred hh--hccccccc--hhhhhh-hhhcCCcceeeeecccCCCCceeccc
Confidence 31 01223455 233332 23445566777776678888777654
No 276
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=90.98 E-value=2.4 Score=38.82 Aligned_cols=56 Identities=21% Similarity=0.332 Sum_probs=34.9
Q ss_pred ceeeEeeCCCCCceeecEEEEEeeCCC--CCEEEEEEEEccCCC-C--CCeeEEEEEeCcc
Q 009539 290 SKKTTVKHKNLNPEWNEEYNFTVRDPE--SQAVELAVYDWEQVG-K--HDKMGMNVVPLKE 345 (532)
Q Consensus 290 ~~~T~v~~~t~nP~Wne~f~f~v~~~~--~~~L~v~v~d~d~~~-~--d~~iG~~~i~l~~ 345 (532)
...|.+...+.+|.|+|+|.+.+.... ...|.|++++...-. + +..+|.+.+||-+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 457888888999999999999887543 568999999875322 1 2689999999988
No 277
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=90.14 E-value=1.8 Score=37.86 Aligned_cols=56 Identities=27% Similarity=0.523 Sum_probs=40.6
Q ss_pred EEeeecCC-CCCcccceEEEEe--cCCCCCCeEEEEEEEccccccCCCCC----ceeEEEEEechhh
Q 009539 444 KTKHVKKN-RDPRWEEEFQFML--EEPPTNDRLHVEVCSVSSRIGLLHPK----ETLGYIDINLSDV 503 (532)
Q Consensus 444 kT~vv~~t-~nP~w~e~f~f~v--~~~~~~~~l~v~V~d~~~~~~~~~~d----~~lG~~~i~L~~l 503 (532)
.|+.+.-+ .++.|||..+|.+ .+.+.+..|.+.||..+.. ..+ ..||.+.++|-+-
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~----~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSK----KKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECS----TTT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCC----CccccceeEEEEEEEEeECC
Confidence 56666666 7999999877775 4556777999999998753 223 6999999999876
No 278
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=89.75 E-value=3.3 Score=38.07 Aligned_cols=56 Identities=14% Similarity=0.256 Sum_probs=42.2
Q ss_pred CceeeEeeCCCCCceeecEEEEEeeCC--CCCEEEEEEEEccCC-CCC---CeeEEEEEeCc
Q 009539 289 PSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYDWEQV-GKH---DKMGMNVVPLK 344 (532)
Q Consensus 289 ~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d~d~~-~~d---~~iG~~~i~l~ 344 (532)
..++|.+...+.+|.|+|++.+.++.. ....|.|++++.... .+| ..+|.+.+||-
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 346888888899999999999887643 367899999875421 122 47899888885
No 279
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=89.47 E-value=1.9 Score=35.14 Aligned_cols=73 Identities=21% Similarity=0.307 Sum_probs=46.8
Q ss_pred EEEEEEEcCCCCcCCCCCCCCcEEEEEE--eCCcCC-ceeeEeeCCCCCceeecEEEEEee--C-CCCCEEEEEEEEcc
Q 009539 256 LHVKVVKAMNLKKKDLLGASDPYVKLKI--TEDKLP-SKKTTVKHKNLNPEWNEEYNFTVR--D-PESQAVELAVYDWE 328 (532)
Q Consensus 256 L~V~v~~A~~L~~~d~~g~~dpyv~v~~--~~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~--~-~~~~~L~v~v~d~d 328 (532)
+.+++..+++..-......++-||.+.+ +++... ...|+.+.-...+.|||...|++. + +....|.+.+|+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 5566666666655443233578888865 333321 225655555666899999998764 2 33678999999865
No 280
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=88.79 E-value=2 Score=38.90 Aligned_cols=93 Identities=25% Similarity=0.320 Sum_probs=61.7
Q ss_pred ceEEEEEEeeeecCCCC---CCCCCEEEEE--EcCeeE----EEeeec----CCCCCcccceEEEEec--CCCCCCeEEE
Q 009539 411 GGLLVVIVHEAQDVEGK---HHTNPYARIL--FRGEER----KTKHVK----KNRDPRWEEEFQFMLE--EPPTNDRLHV 475 (532)
Q Consensus 411 ~g~L~v~i~~a~~L~~~---~~~dpyv~v~--~~~~~~----kT~vv~----~t~nP~w~e~f~f~v~--~~~~~~~l~v 475 (532)
...+.|+|.++.+++.. ...|-|+++. .|++.. .|+... -...+.|||-.+|.+. +.+.+..|.+
T Consensus 7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i 86 (171)
T cd04012 7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL 86 (171)
T ss_pred cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence 45678889999999864 2467777774 455432 454322 2346779998888764 4455669999
Q ss_pred EEEEccccc-c----CCCCCceeEEEEEechhh
Q 009539 476 EVCSVSSRI-G----LLHPKETLGYIDINLSDV 503 (532)
Q Consensus 476 ~V~d~~~~~-~----~~~~d~~lG~~~i~L~~l 503 (532)
.+|+..... + .-..+..||.+.++|-+-
T Consensus 87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 999876420 0 000357999999999874
No 281
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=87.88 E-value=10 Score=34.74 Aligned_cols=56 Identities=23% Similarity=0.345 Sum_probs=41.3
Q ss_pred ceeeEeeCCCCCceeecEEEEEeeCC--CCCEEEEEEEEccC--CC-------CCCeeEEEEEeCcc
Q 009539 290 SKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYDWEQ--VG-------KHDKMGMNVVPLKE 345 (532)
Q Consensus 290 ~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d~d~--~~-------~d~~iG~~~i~l~~ 345 (532)
...|.+...+.+|.|+|++.+.+.-. ....|.|+.|+.+- .. ....+|-+.+||-.
T Consensus 57 ~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 57 SAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred EEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 45788888899999999999887643 35689999998651 11 13468888888765
No 282
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=84.05 E-value=12 Score=37.17 Aligned_cols=109 Identities=17% Similarity=0.273 Sum_probs=76.4
Q ss_pred CceEEEEEEeeeecCCCCCCCCCEEEEEEcCeeEEEeeecCCCCC--cccceEEEEecCCCCCCeEEEEEEEccccccCC
Q 009539 410 GGGLLVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDP--RWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL 487 (532)
Q Consensus 410 ~~g~L~v~i~~a~~L~~~~~~dpyv~v~~~~~~~kT~vv~~t~nP--~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~ 487 (532)
..-.|-|.|++..++... ..-|+.+..+....+|..+.-+..- .-++.....++. .+..|.+.|+-.. +
T Consensus 56 RkF~LLVeI~EI~~i~k~--khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQ--cDnTLkI~lfKKk-----L 126 (508)
T PTZ00447 56 RTFYLLVKINEIFNINKY--KHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQ--CDETLRVDLFTTK-----L 126 (508)
T ss_pred ceeeEEEEehhhhccccc--eeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeee--cCceEEEEEEecc-----c
Confidence 345677888888777754 5789999999988888665533322 234556666654 3568999999775 5
Q ss_pred CCCceeEEEEEechh-hhccc-eeceEEEeCCCC--CeEEEEEE
Q 009539 488 HPKETLGYIDINLSD-VVSNK-RINEKYHLIDSK--NGRIQIEL 527 (532)
Q Consensus 488 ~~d~~lG~~~i~L~~-l~~~~-~~~~~~~L~~~~--~G~i~l~~ 527 (532)
.+..-||.+.++.+. ++++. ...+||-+...+ .++|+|++
T Consensus 127 vkk~hIgdI~InIn~dIIdk~FPKnkWy~c~kDGq~~cRIqLSF 170 (508)
T PTZ00447 127 TKKVHIGQIKIDINASVISKSFPKNEWFVCFKDGQEICKVQMSF 170 (508)
T ss_pred cceeEEEEEEecccHHHHhccCCccceEEEecCCceeeeEEEEe
Confidence 678899999999875 44443 567999996544 47777765
No 283
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=82.36 E-value=8.7 Score=31.74 Aligned_cols=93 Identities=19% Similarity=0.265 Sum_probs=50.5
Q ss_pred EEEEEEcC-eeEEEeeecCCCCCcccceEEEEecCCC------CCCeEEEEEEEccccccCCCCCceeEEEEEechhhhc
Q 009539 433 YARILFRG-EERKTKHVKKNRDPRWEEEFQFMLEEPP------TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVS 505 (532)
Q Consensus 433 yv~v~~~~-~~~kT~vv~~t~nP~w~e~f~f~v~~~~------~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~ 505 (532)
||.+.+-. +.+.|.++. ..+|.+|-+-.|.|.... ....+.|++...-. .....+|.+.++|.++++
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g-----~d~~tla~~~i~l~~ll~ 75 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG-----SDFETLAAGQISLRPLLE 75 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S-----S-EEEEEEEEE--SHHHH
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc-----CCeEEEEEEEeechhhhc
Confidence 44444433 345666665 899999998888887531 12478999988752 236799999999999997
Q ss_pred cc--eeceEEEeCCCC---CeEEEEEEEEEe
Q 009539 506 NK--RINEKYHLIDSK---NGRIQIELQWRT 531 (532)
Q Consensus 506 ~~--~~~~~~~L~~~~---~G~i~l~~~w~p 531 (532)
+. .+...-.|.+.. -|.++..++.+.
T Consensus 76 ~~~~~i~~~~~l~g~~~~~~g~l~y~~rl~~ 106 (107)
T PF11618_consen 76 SNGERIHGSATLVGVSGEDFGTLEYWIRLRV 106 (107)
T ss_dssp --S--EEEEEEE-BSSS-TSEEEEEEEEEEE
T ss_pred CCCceEEEEEEEeccCCCeEEEEEEEEEecC
Confidence 53 466677775543 488888877664
No 284
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=80.83 E-value=7.9 Score=35.40 Aligned_cols=60 Identities=18% Similarity=0.275 Sum_probs=34.7
Q ss_pred eEEEeeecCCCCCcccceEEEEecCCCCC-CeEEEEEEEccccccCCCCCceeEEEEEechh
Q 009539 442 ERKTKHVKKNRDPRWEEEFQFMLEEPPTN-DRLHVEVCSVSSRIGLLHPKETLGYIDINLSD 502 (532)
Q Consensus 442 ~~kT~vv~~t~nP~w~e~f~f~v~~~~~~-~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~ 502 (532)
...|.+..++.+|.|+|+|.+.++..... ..|.+++++-....+ -..+..+|.+-++|-+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~-~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKES-KEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSS-S-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccc-cCccceeEEEEEEeee
Confidence 35888899999999999999999865322 378888888754311 0112799999999987
No 285
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=79.31 E-value=6.6 Score=32.43 Aligned_cols=84 Identities=14% Similarity=0.170 Sum_probs=45.3
Q ss_pred eeeEeeCCCCCceeecEEEEEeeCC-------CCCEEEEEEEEccCCCCCCeeEEEEEeCccCCCCCC--eEEEEecccc
Q 009539 291 KKTTVKHKNLNPEWNEEYNFTVRDP-------ESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEP--SVKTLDLLKN 361 (532)
Q Consensus 291 ~~T~v~~~t~nP~Wne~f~f~v~~~-------~~~~L~v~v~d~d~~~~d~~iG~~~i~l~~l~~~~~--~~~~l~l~~~ 361 (532)
..|.++. +.+|.+|-+-.|.|... .+..+.++++..- ....+.+|.+.+++..+.+... ......+..
T Consensus 13 q~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~-g~d~~tla~~~i~l~~ll~~~~~~i~~~~~l~g- 89 (107)
T PF11618_consen 13 QTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQAL-GSDFETLAAGQISLRPLLESNGERIHGSATLVG- 89 (107)
T ss_dssp EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE--SS-EEEEEEEEE--SHHHH--S--EEEEEEE-B-
T ss_pred eccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeec-cCCeEEEEEEEeechhhhcCCCceEEEEEEEec-
Confidence 4676665 78999998888887632 2568999999875 3346789999999999985543 233333321
Q ss_pred cccCCCCCCccccEEEEEEEEE
Q 009539 362 MDLNDGQNEKSRGQLVVEFIYK 383 (532)
Q Consensus 362 ~~~~~~~~~~~~G~l~l~l~~~ 383 (532)
.++..-|.|...++..
T Consensus 90 ------~~~~~~g~l~y~~rl~ 105 (107)
T PF11618_consen 90 ------VSGEDFGTLEYWIRLR 105 (107)
T ss_dssp ------SSS-TSEEEEEEEEEE
T ss_pred ------cCCCeEEEEEEEEEec
Confidence 1244888888877654
No 286
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=78.37 E-value=6.7 Score=35.69 Aligned_cols=54 Identities=17% Similarity=0.309 Sum_probs=39.9
Q ss_pred eeeEeeCCCCCceeecEEEEEeeCC--CCCEEEEEEEEccCC-----CCCCeeEEEEEeCcc
Q 009539 291 KKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYDWEQV-----GKHDKMGMNVVPLKE 345 (532)
Q Consensus 291 ~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d~d~~-----~~d~~iG~~~i~l~~ 345 (532)
++|.+..+ .+|.|+|+|.+.++.. ....|.|++++...- .....+|-+.+||-+
T Consensus 55 ~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 55 YTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 45555445 9999999999988543 367899999986632 235679999998876
No 287
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=77.20 E-value=6.1 Score=44.12 Aligned_cols=106 Identities=11% Similarity=0.191 Sum_probs=77.1
Q ss_pred CCcEEEEEEeCCcCCceeeEeeCCC-CCceeecEEEEEeeCCCCCEEEEEEEEccCCCCCCeeEEEEEeCccCCCCCCeE
Q 009539 275 SDPYVKLKITEDKLPSKKTTVKHKN-LNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSV 353 (532)
Q Consensus 275 ~dpyv~v~~~~~~~~~~~T~v~~~t-~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~ 353 (532)
.++|+.+.+..... .+|....+. .+|.|.+.|....... ...+.+.+-+.+-.+....+|.+.++...+..+....
T Consensus 138 ~e~Ylt~~l~~~~~--~~t~~~~~f~e~s~~~f~~~~~~~h~-~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~ 214 (887)
T KOG1329|consen 138 LENYLTVVLHKARY--RRTHVIYEFLENSRWSFSFDIGFAHK-AGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIG 214 (887)
T ss_pred ccchheeeechhhh--hchhhhhcccccchhhhhcccccccc-ccEEEEeecCCccccceeEEEEeccchhhhhcccccc
Confidence 58999999886554 366666665 8899999998877665 4688889888887776889999999999999887777
Q ss_pred EEEecccccccCCCCCCccccEEEEEEEEEEccC
Q 009539 354 KTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKE 387 (532)
Q Consensus 354 ~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~ 387 (532)
.|++++..-. +.....-.+.+.+.|.+...
T Consensus 215 ~~~~Il~~d~----~~~~~~~~~~~~~~~~~~~~ 244 (887)
T KOG1329|consen 215 GWFPILDNDG----KPHQKGSNESLRLGFTPMEK 244 (887)
T ss_pred ceeeeeccCC----ccccCCcccceEEeeEeech
Confidence 7777643211 11223335667778877654
No 288
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=76.76 E-value=14 Score=30.06 Aligned_cols=68 Identities=19% Similarity=0.326 Sum_probs=43.6
Q ss_pred EEEEEeeeecCCCC--C-CCCCEEEEEE--cCee----EEEeeecCCCCCcccceEEEEec--CCCCCCeEEEEEEEcc
Q 009539 414 LVVIVHEAQDVEGK--H-HTNPYARILF--RGEE----RKTKHVKKNRDPRWEEEFQFMLE--EPPTNDRLHVEVCSVS 481 (532)
Q Consensus 414 L~v~i~~a~~L~~~--~-~~dpyv~v~~--~~~~----~kT~vv~~t~nP~w~e~f~f~v~--~~~~~~~l~v~V~d~~ 481 (532)
+.+.+..+.+.+.. + ..+-||++.+ |++. ..|+.+.-...+.|||-.+|++. +.+.+..|.+.+|+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 44555555555442 1 2366777644 5543 25665555667899999888764 4455679999999865
No 289
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=72.48 E-value=12 Score=33.96 Aligned_cols=57 Identities=18% Similarity=0.318 Sum_probs=41.5
Q ss_pred CceeeEeeCCCCCceeecEEEEEeeCC--CCCEEEEEEEEccCCCC------CCeeEEEEEeCcc
Q 009539 289 PSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYDWEQVGK------HDKMGMNVVPLKE 345 (532)
Q Consensus 289 ~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d~d~~~~------d~~iG~~~i~l~~ 345 (532)
....|.+...+.+|.|+|++.+.+... ....|.|+.|+-+.-.+ ...+|-+.+||-+
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 346788889999999999999887643 35689999998543211 2457887777654
No 290
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=72.10 E-value=15 Score=33.60 Aligned_cols=58 Identities=21% Similarity=0.324 Sum_probs=40.6
Q ss_pred eEEEeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEccccccCCCCCceeEEEEEech
Q 009539 442 ERKTKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLS 501 (532)
Q Consensus 442 ~~kT~vv~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~ 501 (532)
..+|.+..++.+|.|+|++.+.++.... ...|.++++...... -.....+|-.-++|-
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~--k~~~~pfg~s~lpL~ 112 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKD--KGEKKLFGFSFVPLM 112 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeecc--CCCCCceEEEEEeec
Confidence 3489999999999999999999975422 236777777653220 011367888888874
No 291
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=70.28 E-value=19 Score=33.15 Aligned_cols=60 Identities=17% Similarity=0.176 Sum_probs=41.3
Q ss_pred eEEEeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEccccccCCCCCceeEEEEEech
Q 009539 442 ERKTKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLS 501 (532)
Q Consensus 442 ~~kT~vv~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~ 501 (532)
..+|.|.++..+|.|+|++.+.++.... ...|.+++++......--......|-.-++|-
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 4588999999999999999999875422 23788888765321000012357888888874
No 292
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=67.98 E-value=6.9 Score=43.73 Aligned_cols=98 Identities=14% Similarity=0.274 Sum_probs=73.8
Q ss_pred CCCCCEEEEEEcCee-EEEeeecCC-CCCcccceEEEEecCCCCCCeEEEEEEEccccccCCCCCceeEEEEEechhhhc
Q 009539 428 HHTNPYARILFRGEE-RKTKHVKKN-RDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVS 505 (532)
Q Consensus 428 ~~~dpyv~v~~~~~~-~kT~vv~~t-~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~ 505 (532)
...++|+.+.+.... .+|..+.+. .+|.|.+.|+..+... ...++++|-+.+- .+....+|.+.++...+..
T Consensus 136 ~~~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~--~g~v~~~~~~~~~----~G~s~~w~~v~~s~~~~~~ 209 (887)
T KOG1329|consen 136 KTLENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHK--AGYVIFRVKGARV----PGWSKRWGRVKISFLQYCS 209 (887)
T ss_pred hhccchheeeechhhhhchhhhhcccccchhhhhcccccccc--ccEEEEeecCCcc----ccceeEEEEeccchhhhhc
Confidence 347899999997765 488877776 8999999998887754 3467888877653 3447899999999999999
Q ss_pred cceeceEEEeCCCC------CeEEEEEEEEEe
Q 009539 506 NKRINEKYHLIDSK------NGRIQIELQWRT 531 (532)
Q Consensus 506 ~~~~~~~~~L~~~~------~G~i~l~~~w~p 531 (532)
+....+|++..+.. +..+.+++.++|
T Consensus 210 ~~~~~~~~~Il~~d~~~~~~~~~~~~~~~~~~ 241 (887)
T KOG1329|consen 210 GHRIGGWFPILDNDGKPHQKGSNESLRLGFTP 241 (887)
T ss_pred cccccceeeeeccCCccccCCcccceEEeeEe
Confidence 88888999976532 344445566655
No 293
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=60.24 E-value=8.9 Score=42.70 Aligned_cols=74 Identities=27% Similarity=0.328 Sum_probs=56.3
Q ss_pred cCCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeC--CcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEE
Q 009539 248 AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITE--DKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVY 325 (532)
Q Consensus 248 ~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~--~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~ 325 (532)
....-.|.+.+.+.+|..+... ..-||...+.. ....+.+|.++.+|..|.||++|+..+.. .+.+++..+
T Consensus 753 eSpl~ygflh~~vhsat~lkqs-----~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~--sqS~r~~~~ 825 (1112)
T KOG4269|consen 753 ESPLLYGFLHVIVHSATGLKQS-----RNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIE--SQSSRLEKT 825 (1112)
T ss_pred cCcccccceeeeeccccccccc-----cceeeehhhhhhccccccccceeeecccCCCCChhcccchhh--ccccchhhh
Confidence 4455678999999999988643 47788887753 22334689999999999999999988754 466777777
Q ss_pred Ecc
Q 009539 326 DWE 328 (532)
Q Consensus 326 d~d 328 (532)
+.+
T Consensus 826 ek~ 828 (1112)
T KOG4269|consen 826 EKS 828 (1112)
T ss_pred ccc
Confidence 765
No 294
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=54.67 E-value=64 Score=29.36 Aligned_cols=62 Identities=19% Similarity=0.230 Sum_probs=42.7
Q ss_pred eeEEEeeecCCCCCcccceEEEEecCCCCC-CeEEEEEEEccccccC--CCCCceeEEEEEechh
Q 009539 441 EERKTKHVKKNRDPRWEEEFQFMLEEPPTN-DRLHVEVCSVSSRIGL--LHPKETLGYIDINLSD 502 (532)
Q Consensus 441 ~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~-~~l~v~V~d~~~~~~~--~~~d~~lG~~~i~L~~ 502 (532)
....|.|..++.+|.|+|++...++..... ..|.+++++-.....- -.....+|-.-++|-+
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 445899999999999999999998764222 3788888875422100 0123569988888754
No 295
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=50.65 E-value=3.7 Score=44.47 Aligned_cols=68 Identities=15% Similarity=0.095 Sum_probs=45.6
Q ss_pred CCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCCCeeEEEEEeCccC
Q 009539 275 SDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKEL 346 (532)
Q Consensus 275 ~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~iG~~~i~l~~l 346 (532)
-|||+.+.+.-... ..+.+...+.+|.|+|+|...+.. ...+.+.++.......+.....+++-.+++
T Consensus 28 l~~y~~v~vk~~~~--~~~~~~~~~~~~~~~~~F~~~v~~--~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~ 95 (694)
T KOG0694|consen 28 LQPYLAVELKVKQG--AENMTKVELRIPELRETFHVEVVA--GGAKNIIVLLKSPDPKALSEAQLSLQEESQ 95 (694)
T ss_pred hhhhheeccceeec--ccccCCCCCCCchhhhheeeeeec--CCceEEEEEecCCcchhhHHHhHHHHHHHH
Confidence 58898888764332 234457889999999999999765 467888998875444444444444433333
No 296
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=50.46 E-value=86 Score=28.70 Aligned_cols=62 Identities=18% Similarity=0.232 Sum_probs=42.8
Q ss_pred eeEEEeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcccccc-----CCCCCceeEEEEEechh
Q 009539 441 EERKTKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIG-----LLHPKETLGYIDINLSD 502 (532)
Q Consensus 441 ~~~kT~vv~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~~-----~~~~d~~lG~~~i~L~~ 502 (532)
....|.|..++.+|.|.|++.+.++-... ...|.+++++-.-..+ --.....+|.+-++|-.
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 45689999999999999999998876422 2368888887641100 00124579999999865
No 297
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=50.04 E-value=62 Score=29.34 Aligned_cols=59 Identities=22% Similarity=0.267 Sum_probs=40.3
Q ss_pred EEeeecCCCCCcccceEEEEecCCC-CCCeEEEEEEEcccccc-CCCCCceeEEEEEechh
Q 009539 444 KTKHVKKNRDPRWEEEFQFMLEEPP-TNDRLHVEVCSVSSRIG-LLHPKETLGYIDINLSD 502 (532)
Q Consensus 444 kT~vv~~t~nP~w~e~f~f~v~~~~-~~~~l~v~V~d~~~~~~-~~~~d~~lG~~~i~L~~ 502 (532)
-|.++....+|.|+|+|...++... ....|.+++++-..... --.....+|.+-++|-+
T Consensus 55 ~~sv~~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 55 YTSVVYYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEEcCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 3444555599999999999996542 23478888887653210 01236789999999876
No 298
>KOG4092 consensus Mitochondrial F1F0-ATP synthase, subunit f [Energy production and conversion]
Probab=47.89 E-value=8.6 Score=30.38 Aligned_cols=44 Identities=27% Similarity=0.493 Sum_probs=36.0
Q ss_pred CCHHHHHhhcCCCCCceeCCCCcchHHHHHHHHhhchhHHHHHH
Q 009539 47 RDSETLQQMLPEIPLWVKCPDYDRVDWLNKFLELMWPYLDKAIC 90 (532)
Q Consensus 47 ~~~~~~~~~~~~~p~w~~~~d~E~~~WlN~~l~~~Wp~~~~~~~ 90 (532)
.|.+-++--|++||+|+--.|.---.-.|.+..-+|.+.+.+++
T Consensus 27 ~D~kf~~VKLGelpaW~~rR~ktPsa~~gaf~R~~wR~~nkY~~ 70 (108)
T KOG4092|consen 27 KDKKFLEVKLGELPAWILRRDKTPSAIFGAFQRGYWRYYNKYIN 70 (108)
T ss_pred ccceeeeeeecccHHHHHhccCChHHHHHHHHHHHHHHHhheec
Confidence 34444455578999999988888888899999999999888877
No 299
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=46.91 E-value=55 Score=36.86 Aligned_cols=95 Identities=17% Similarity=0.191 Sum_probs=60.3
Q ss_pred ceEEEEEEeeeecCCCCCCCCCEEEEEE----cCe----eEEEeeecCCCCCcccceEEEEec--CCCCCCeEEEEEEEc
Q 009539 411 GGLLVVIVHEAQDVEGKHHTNPYARILF----RGE----ERKTKHVKKNRDPRWEEEFQFMLE--EPPTNDRLHVEVCSV 480 (532)
Q Consensus 411 ~g~L~v~i~~a~~L~~~~~~dpyv~v~~----~~~----~~kT~vv~~t~nP~w~e~f~f~v~--~~~~~~~l~v~V~d~ 480 (532)
..-++|.++++.++.....-|-+|.|.. |++ .+.|..+..+.+|.||+..+|.+. +.|....+.+.|+.-
T Consensus 342 ~~~frI~l~~is~~n~~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~~v 421 (1076)
T KOG0904|consen 342 DRPFRIKLVGISKVNLPETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAIYAV 421 (1076)
T ss_pred CCceEEEEeeccccCCCcccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeeeeEe
Confidence 3467788888876654444556666554 333 245666777899999998777664 444555788888765
Q ss_pred cc------------cccCCCCCceeEEEEEechhhhc
Q 009539 481 SS------------RIGLLHPKETLGYIDINLSDVVS 505 (532)
Q Consensus 481 ~~------------~~~~~~~d~~lG~~~i~L~~l~~ 505 (532)
.. .++.=+.+..+|.+.+.|-|-.+
T Consensus 422 ~~~~~s~~~s~~~~~kk~k~~~~plaWvN~~lfD~kd 458 (1076)
T KOG0904|consen 422 KAKAKSKKNSAESTKKKSKKEHCPLAWVNLMLFDHKD 458 (1076)
T ss_pred echhccccccchhhhhccccccCceEEEeeeeeechh
Confidence 20 01112356789999988876543
No 300
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=45.11 E-value=2.2e+02 Score=28.59 Aligned_cols=111 Identities=13% Similarity=0.205 Sum_probs=71.1
Q ss_pred eEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCc--eeecEEEEEeeCCCCCEEEEEEEEccCC
Q 009539 253 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNP--EWNEEYNFTVRDPESQAVELAVYDWEQV 330 (532)
Q Consensus 253 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP--~Wne~f~f~v~~~~~~~L~v~v~d~d~~ 330 (532)
.=.|-|.|.+-.++.. ....|+.++.+.... +|..+.-+..- .-+|.....+.. .+.+|++.+|-.. +
T Consensus 57 kF~LLVeI~EI~~i~k-----~khiyIef~~Gr~d~---TT~~IpTsKK~RI~IqqRV~IkIRQ-cDnTLkI~lfKKk-L 126 (508)
T PTZ00447 57 TFYLLVKINEIFNINK-----YKHIYIIFSTDKYDF---TTDEIPTNKKNRIHIDQRVDIKIRQ-CDETLRVDLFTTK-L 126 (508)
T ss_pred eeeEEEEehhhhcccc-----ceeEEEEEEcCceEE---EccccccCcCceEEEeeeeeeeeee-cCceEEEEEEecc-c
Confidence 3457777777666543 347789998875543 44333222222 233444444533 4789999999886 5
Q ss_pred CCCCeeEEEEEeCcc-CC-CCCCeEEEEecccccccCCCCCCccccEEEEEEE
Q 009539 331 GKHDKMGMNVVPLKE-LT-PEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFI 381 (532)
Q Consensus 331 ~~d~~iG~~~i~l~~-l~-~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~ 381 (532)
.+...||.+.+.+.. +. ..-++..|+.+.+ ++...+++.+++.
T Consensus 127 vkk~hIgdI~InIn~dIIdk~FPKnkWy~c~k--------DGq~~cRIqLSFh 171 (508)
T PTZ00447 127 TKKVHIGQIKIDINASVISKSFPKNEWFVCFK--------DGQEICKVQMSFY 171 (508)
T ss_pred cceeEEEEEEecccHHHHhccCCccceEEEec--------CCceeeeEEEEeh
Confidence 578899999999874 33 3346777887744 4777888888764
No 301
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=44.95 E-value=90 Score=35.26 Aligned_cols=70 Identities=21% Similarity=0.239 Sum_probs=44.4
Q ss_pred EEEEEEEEcCCCCcCCCCCCCCcEEEEEE----eCCcCCc-eeeEeeCCCCCceeecEEEEEeeC---CCCCEEEEEEEE
Q 009539 255 ILHVKVVKAMNLKKKDLLGASDPYVKLKI----TEDKLPS-KKTTVKHKNLNPEWNEEYNFTVRD---PESQAVELAVYD 326 (532)
Q Consensus 255 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~----~~~~~~~-~~T~v~~~t~nP~Wne~f~f~v~~---~~~~~L~v~v~d 326 (532)
-++|+++++.+..- ....|-+|.|.. |++...+ .+|.-+..+.+|.||+..+|.++- |....|.+.||.
T Consensus 344 ~frI~l~~is~~n~---~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~~ 420 (1076)
T KOG0904|consen 344 PFRIKLVGISKVNL---PETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAIYA 420 (1076)
T ss_pred ceEEEEeeccccCC---CcccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeeeeE
Confidence 57778877765532 223356665554 3333322 355555668899999998888763 335678888886
Q ss_pred c
Q 009539 327 W 327 (532)
Q Consensus 327 ~ 327 (532)
-
T Consensus 421 v 421 (1076)
T KOG0904|consen 421 V 421 (1076)
T ss_pred e
Confidence 4
No 302
>KOG2238 consensus Uncharacterized conserved protein TEX2, contains PH domain [General function prediction only]
Probab=42.88 E-value=9 Score=42.11 Aligned_cols=91 Identities=18% Similarity=0.300 Sum_probs=68.1
Q ss_pred cchHHHHHHHHhhchhHHHH--HHHHHHHHHHHHHHh-cCCCceeeeEEEeEeeCCCCCCeEeeEEEEec-CCceEEEEe
Q 009539 69 DRVDWLNKFLELMWPYLDKA--ICKTAKNIAKPIIAE-QIPKYKIESVEFETLTLGTLPPTFQGMKVYVT-DEKELIMEP 144 (532)
Q Consensus 69 E~~~WlN~~l~~~Wp~~~~~--~~~~i~~~~~~~l~~-~~p~~~i~~~~~~~~~lG~~~p~i~~v~~~~~-~~~~~~ld~ 144 (532)
|.+-|||.++.+..--+.+. ..+.+.+..+.++.. ..|.+ ++.+--.+..-|..||.|++.++... ......++.
T Consensus 334 ~~T~~ln~~~~rl~~~~k~~~~~~n~~~~r~q~~y~~~Rt~~~-~eelv~~~vd~~nl~p~i~~~~~l~~~~~gv~~~~~ 412 (795)
T KOG2238|consen 334 EGTLALNAVLGRLFLDLKQPTDLKNSSHERIQRIYSKMRTPSY-IEELVCRKVDTGNLPPLITSTRVLPVEMSGVWAFEI 412 (795)
T ss_pred hhhhhhhhhcchhhhcccCCccccchHHHHHHHHHhccccchh-hhhhhhhhhhhcCCccccccceeEEeeccccccCcc
Confidence 45789999999987544432 445555566666666 57887 88888889999999999999999885 344556788
Q ss_pred eeeEeCCCceEEEEEE
Q 009539 145 CLKWAANPNVTIGVKA 160 (532)
Q Consensus 145 ~~~~~~~~~i~l~~~~ 160 (532)
|+.|.||-.+.+..++
T Consensus 413 di~y~~d~~~~i~~~v 428 (795)
T KOG2238|consen 413 DIEYRGDLTIIIETRV 428 (795)
T ss_pred ceeecccccccccccc
Confidence 8999998777665543
No 303
>KOG4027 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.08 E-value=1.7e+02 Score=25.91 Aligned_cols=72 Identities=18% Similarity=0.153 Sum_probs=43.6
Q ss_pred CCCCcEEEEEEe--C--------CcCCceeeEeeCCCCCc-eeecEEEEEeeCCC---CCEEEEEEEEccCCCCCCeeEE
Q 009539 273 GASDPYVKLKIT--E--------DKLPSKKTTVKHKNLNP-EWNEEYNFTVRDPE---SQAVELAVYDWEQVGKHDKMGM 338 (532)
Q Consensus 273 g~~dpyv~v~~~--~--------~~~~~~~T~v~~~t~nP-~Wne~f~f~v~~~~---~~~L~v~v~d~d~~~~d~~iG~ 338 (532)
-.+|.||+.+.- + +.-....|.-.++-.|| +||--++....... =..|.+.||-.|..++|...|-
T Consensus 24 e~~dv~~ky~~Vag~DW~~~~Gpqegvsq~s~~~r~~~~~iv~n~Pievt~KstsPygWPqivl~vfg~d~~G~d~v~GY 103 (187)
T KOG4027|consen 24 EESDVCVKYSTVAGGDWKIINGPQEGVSQSSFSFRGADNQIVINLPIEVTLKSTSPYGWPQIVLNVFGKDHSGKDCVTGY 103 (187)
T ss_pred CCCceEEEEEEEecCCceeccCcccchhhheeccccCCCceEEecceEEEeccCCCCCCceEEEEEecCCcCCcceeeee
Confidence 346888887762 1 11111122222344455 68865555554321 2468899999999999999998
Q ss_pred EEEeCc
Q 009539 339 NVVPLK 344 (532)
Q Consensus 339 ~~i~l~ 344 (532)
..+++-
T Consensus 104 g~~hiP 109 (187)
T KOG4027|consen 104 GMLHIP 109 (187)
T ss_pred eeEecC
Confidence 877654
No 304
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=42.02 E-value=2.6e+02 Score=25.04 Aligned_cols=79 Identities=22% Similarity=0.276 Sum_probs=51.5
Q ss_pred EEEEeeeecCCCCCCCCCEEEEEEc---------C-e-eEEEeeecC-----CCCCcccceEEEEecCCCC--CCeEEEE
Q 009539 415 VVIVHEAQDVEGKHHTNPYARILFR---------G-E-ERKTKHVKK-----NRDPRWEEEFQFMLEEPPT--NDRLHVE 476 (532)
Q Consensus 415 ~v~i~~a~~L~~~~~~dpyv~v~~~---------~-~-~~kT~vv~~-----t~nP~w~e~f~f~v~~~~~--~~~l~v~ 476 (532)
.-.|.+|.+... .+-||+-.+. + . .-.|.+.+. ...-.||..|++....... -.+|.++
T Consensus 5 ~G~I~~a~~f~~---~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~l~ 81 (168)
T PF07162_consen 5 IGEIESAEGFEE---DNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLVLQ 81 (168)
T ss_pred EEEEEEEECCCC---CCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEEEE
Confidence 345777876664 3668887651 1 2 345655543 3345699888887765322 1389999
Q ss_pred EEEccccccCCCCCceeEEEEEec
Q 009539 477 VCSVSSRIGLLHPKETLGYIDINL 500 (532)
Q Consensus 477 V~d~~~~~~~~~~d~~lG~~~i~L 500 (532)
||..|. ++++.+.|...+.|
T Consensus 82 V~~~D~----~gr~~~~GYG~~~l 101 (168)
T PF07162_consen 82 VYSLDS----WGRDRVEGYGFCHL 101 (168)
T ss_pred EEEEcc----cCCeEEeEEeEEEe
Confidence 999885 67888888776665
No 305
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=38.63 E-value=4.7e+02 Score=27.15 Aligned_cols=64 Identities=20% Similarity=0.240 Sum_probs=38.1
Q ss_pred CEEEEEEEEccC-----C-CCCCeeEEEEEeCccCCC-CC---CeEEEEecccccccCCCCCCccccEEEEEEEEEE
Q 009539 318 QAVELAVYDWEQ-----V-GKHDKMGMNVVPLKELTP-EE---PSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP 384 (532)
Q Consensus 318 ~~L~v~v~d~d~-----~-~~d~~iG~~~i~l~~l~~-~~---~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p 384 (532)
..|+|.||.-.. + .+..+||.+.++|.---. +. -+..|+.+-+... ..+.....+||+.+.-.|
T Consensus 95 ~~L~i~VY~Gr~G~tCGv~~~~klLG~v~vpldl~~ae~kp~v~hnGWi~iGk~~~---~~~~~~~aeLHl~Vr~Ep 168 (460)
T PF06219_consen 95 PCLEISVYTGRRGSTCGVGNSGKLLGKVRVPLDLKWAEGKPVVFHNGWISIGKNKQ---GSGKSPSAELHLVVRAEP 168 (460)
T ss_pred ceEEEEEEECCCCCcccccccceEEEEEEEEeccccccCCeeEEEccceecCCCCC---CCCCCCcceEEEEEeccC
Confidence 579999998542 2 456799999999983222 11 1334665522110 111234678999887665
No 306
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=35.27 E-value=6.4 Score=42.07 Aligned_cols=59 Identities=17% Similarity=0.140 Sum_probs=41.6
Q ss_pred CeEEEEEEEEEcCCCCcCC--C--CCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeC
Q 009539 252 PVGILHVKVVKAMNLKKKD--L--LGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRD 314 (532)
Q Consensus 252 ~~g~L~V~v~~A~~L~~~d--~--~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~ 314 (532)
-.|+...+++.|.+++.-- . .-+.++++...++.+.. +|+....+.+|.|||. .+.+.+
T Consensus 278 ~~gi~ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf~~~~f---rt~~~~~~e~piyNe~-~~E~~~ 340 (975)
T KOG2419|consen 278 FTGIALLTLIGAEMKYDIVEDVAKLFKDKWLAITSFGEQTF---RTEISDDTEKPIYNED-EREDSD 340 (975)
T ss_pred hhhhHHHHHhhhhcccchhhhhhhccCCCchheeecchhhh---hhhhhccccccccccc-cccccc
Confidence 4566666777777765321 1 12458899999987765 8999999999999987 555544
No 307
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=34.25 E-value=1.2e+02 Score=25.82 Aligned_cols=91 Identities=14% Similarity=0.131 Sum_probs=50.9
Q ss_pred EEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCcee-ecEEEEEeeC--CCCCEEEEEEEEccC-C
Q 009539 255 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEW-NEEYNFTVRD--PESQAVELAVYDWEQ-V 330 (532)
Q Consensus 255 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~W-ne~f~f~v~~--~~~~~L~v~v~d~d~-~ 330 (532)
.|.++-+.-..+|..+..+.+.||++++-++... ..|.... ...... ...+.+.+.. +-...+.|++|+.+. .
T Consensus 5 ~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~~~v--~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~~ 81 (134)
T PF10409_consen 5 PLFLKSIILHGIPNFNSGGGCRPYIEIYNGGKKV--FSTSKSY-EDPKSYEQDSVIIELPKNLPLRGDVLIKFYHKRSSS 81 (134)
T ss_dssp EEEEEEEEEES-TTSTTSSCCTEEEEEEETTEEE--EETCCTC-CCCCEEETTCEEEEEEEEEEEESEEEEEEEECETTE
T ss_pred eEEEEEEEEECCCccCCCCCEEEEEEEECCCccE--EEeccce-eccccccceeEEEEeCCCCeEeCCEEEEEEeCCCcc
Confidence 3444444445666655567789999999765432 1111111 111111 1223333321 124678999999873 4
Q ss_pred CCCCeeEEEEEeCccCCC
Q 009539 331 GKHDKMGMNVVPLKELTP 348 (532)
Q Consensus 331 ~~d~~iG~~~i~l~~l~~ 348 (532)
..++.+.++.+.-.-+..
T Consensus 82 ~~~~~~f~~~FnT~Fi~~ 99 (134)
T PF10409_consen 82 MSKEKMFRFWFNTGFIEP 99 (134)
T ss_dssp CCCEEEEEEEEEGGGSBT
T ss_pred cccCeEEEEEEeeeeeec
Confidence 567789999998777763
No 308
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=33.99 E-value=23 Score=23.47 Aligned_cols=13 Identities=38% Similarity=1.081 Sum_probs=7.6
Q ss_pred hHhheeeeeEEec
Q 009539 21 LVIGYFLFIYFQP 33 (532)
Q Consensus 21 ~~~~~~~~~~~~~ 33 (532)
++++++++.||++
T Consensus 26 ~vl~~~l~~~~rR 38 (40)
T PF08693_consen 26 IVLGAFLFFWYRR 38 (40)
T ss_pred HHHHHHhheEEec
Confidence 4455666666664
No 309
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=33.72 E-value=1.4e+02 Score=25.92 Aligned_cols=74 Identities=18% Similarity=0.276 Sum_probs=53.2
Q ss_pred CCCCCCEEEEEEcCeeEEEeeecCCCCCcccceEEEEecC-----C------CCCCeEEEEEEEccccccCCCCCceeEE
Q 009539 427 KHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEE-----P------PTNDRLHVEVCSVSSRIGLLHPKETLGY 495 (532)
Q Consensus 427 ~~~~dpyv~v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~-----~------~~~~~l~v~V~d~~~~~~~~~~d~~lG~ 495 (532)
..+.|-|..|++.|+.++|+-....--=.++|.|.|.-.- + -..+.+.++++..... ....|+.
T Consensus 17 ~~~~~vyL~v~~lg~~~~T~~~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iELiQl~~~-----~g~iLA~ 91 (140)
T PF14909_consen 17 CDKGDVYLSVCILGQYKRTRCLPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIELIQLVPP-----AGEILAY 91 (140)
T ss_pred CCCCCEEEEEEEcccEeecccCCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEEEEEeCC-----CCcEEEE
Confidence 3568899999999999999866443333467888885321 1 1245788998887532 3689999
Q ss_pred EEEechhhhc
Q 009539 496 IDINLSDVVS 505 (532)
Q Consensus 496 ~~i~L~~l~~ 505 (532)
.+-+++|++-
T Consensus 92 ye~n~rDfLf 101 (140)
T PF14909_consen 92 YEENTRDFLF 101 (140)
T ss_pred EeccccceEc
Confidence 9999999875
No 310
>PF10206 WRW: Mitochondrial F1F0-ATP synthase, subunit f; InterPro: IPR019344 This entry represents small proteins of approximately 110 amino acids, which are highly conserved from nematodes to humans. Some have been annotated in Swiss-Prot as being the f subunit of mitochondrial F1F0-ATP synthase but this could not be confirmed. The sequence has a well-conserved WRW motif. The exact function of the protein is not known.
Probab=31.44 E-value=30 Score=28.32 Aligned_cols=36 Identities=28% Similarity=0.446 Sum_probs=31.5
Q ss_pred hcCCCCCceeCCCCcchHHHHHHHHhhchhHHHHHH
Q 009539 55 MLPEIPLWVKCPDYDRVDWLNKFLELMWPYLDKAIC 90 (532)
Q Consensus 55 ~~~~~p~w~~~~d~E~~~WlN~~l~~~Wp~~~~~~~ 90 (532)
-|++||+|+.-.|..-...++.+-.-+|-+.+.++.
T Consensus 35 KLgELpsW~~rRd~sP~~~~~a~sR~~wry~~KYi~ 70 (104)
T PF10206_consen 35 KLGELPSWLSRRDKSPSGIAGAFSRGYWRYQHKYIN 70 (104)
T ss_pred ecchhHHHHhhccCCHHHHHHHHHHHHHHHHHhhhc
Confidence 367899999999999999999999999988887776
No 311
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=30.35 E-value=2.4e+02 Score=23.85 Aligned_cols=74 Identities=15% Similarity=0.148 Sum_probs=44.0
Q ss_pred CCCCCCEEEEEEcCeeEE-EeeecCCCCCcc-cceEEEEecCC-CCCCeEEEEEEEccccccCCCCCceeEEEEEechhh
Q 009539 427 KHHTNPYARILFRGEERK-TKHVKKNRDPRW-EEEFQFMLEEP-PTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDV 503 (532)
Q Consensus 427 ~~~~dpyv~v~~~~~~~k-T~vv~~t~nP~w-~e~f~f~v~~~-~~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l 503 (532)
.+.+.||++|+-+++... |...... .... ...+.+.+... +....+.|++++.+.. ...++.+.++.++-.-+
T Consensus 22 ~~gc~p~i~I~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~---~~~~~~~f~~~FnT~Fi 97 (134)
T PF10409_consen 22 GGGCRPYIEIYNGGKKVFSTSKSYED-PKSYEQDSVIIELPKNLPLRGDVLIKFYHKRSS---SMSKEKMFRFWFNTGFI 97 (134)
T ss_dssp SSCCTEEEEEEETTEEEEETCCTCCC-CCEEETTCEEEEEEEEEEEESEEEEEEEECETT---ECCCEEEEEEEEEGGGS
T ss_pred CCCEEEEEEEECCCccEEEeccceec-cccccceeEEEEeCCCCeEeCCEEEEEEeCCCc---ccccCeEEEEEEeeeee
Confidence 467899999999887763 3322111 1111 12233333311 2345799999988732 24577899998887766
Q ss_pred h
Q 009539 504 V 504 (532)
Q Consensus 504 ~ 504 (532)
.
T Consensus 98 ~ 98 (134)
T PF10409_consen 98 E 98 (134)
T ss_dssp B
T ss_pred e
Confidence 5
No 312
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=30.33 E-value=4e+02 Score=23.79 Aligned_cols=96 Identities=13% Similarity=0.247 Sum_probs=58.2
Q ss_pred EEEEEEcCCCCcCCCCCCCCcEEEEEEeC-------CcCC-ceeeEeeCC-----CCCceeecEEEEEeeCCC---CCEE
Q 009539 257 HVKVVKAMNLKKKDLLGASDPYVKLKITE-------DKLP-SKKTTVKHK-----NLNPEWNEEYNFTVRDPE---SQAV 320 (532)
Q Consensus 257 ~V~v~~A~~L~~~d~~g~~dpyv~v~~~~-------~~~~-~~~T~v~~~-----t~nP~Wne~f~f~v~~~~---~~~L 320 (532)
.=.|.+|.+.. .++-||+..+.- .... ...|.+... +..-.||.-|.+...... -..|
T Consensus 5 ~G~I~~a~~f~------~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L 78 (168)
T PF07162_consen 5 IGEIESAEGFE------EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQL 78 (168)
T ss_pred EEEEEEEECCC------CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceE
Confidence 34567777543 346788888742 1112 345555532 334579987776655322 2589
Q ss_pred EEEEEEccCCCCCCeeEEEEEeCccCCCCCCeEEEEeccc
Q 009539 321 ELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLK 360 (532)
Q Consensus 321 ~v~v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~ 360 (532)
.++||..|..+++...|-..+.|-.- ++ .++...++++
T Consensus 79 ~l~V~~~D~~gr~~~~GYG~~~lP~~-pG-~h~~~v~~wr 116 (168)
T PF07162_consen 79 VLQVYSLDSWGRDRVEGYGFCHLPTQ-PG-RHEVEVPTWR 116 (168)
T ss_pred EEEEEEEcccCCeEEeEEeEEEeCCC-Cc-eEEEEEEEEe
Confidence 99999999999999988766655322 22 3444444443
No 313
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=29.54 E-value=22 Score=38.79 Aligned_cols=50 Identities=16% Similarity=0.179 Sum_probs=39.4
Q ss_pred CCCCEEEEEEcCeeE-EEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcc
Q 009539 429 HTNPYARILFRGEER-KTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVS 481 (532)
Q Consensus 429 ~~dpyv~v~~~~~~~-kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~ 481 (532)
..+||+.+.+.-+.. ++.+.+.+..|.|+++|...+... ..+.|.|+...
T Consensus 27 al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~~---~~~~i~v~~~~ 77 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVAG---GAKNIIVLLKS 77 (694)
T ss_pred hhhhhheeccceeecccccCCCCCCCchhhhheeeeeecC---CceEEEEEecC
Confidence 468999988876554 566678899999999999997653 56888888763
No 314
>PF15102 TMEM154: TMEM154 protein family
Probab=27.38 E-value=69 Score=27.91 Aligned_cols=12 Identities=33% Similarity=0.703 Sum_probs=5.5
Q ss_pred eeeEEecCCCCC
Q 009539 27 LFIYFQPTDVKN 38 (532)
Q Consensus 27 ~~~~~~~~~~~~ 38 (532)
+.+|++++|.|.
T Consensus 78 lv~~~kRkr~K~ 89 (146)
T PF15102_consen 78 LVIYYKRKRTKQ 89 (146)
T ss_pred heeEEeecccCC
Confidence 444555444444
No 315
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=26.27 E-value=1.9e+02 Score=33.19 Aligned_cols=142 Identities=15% Similarity=0.134 Sum_probs=74.1
Q ss_pred CCCeeEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCc
Q 009539 332 KHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGG 411 (532)
Q Consensus 332 ~d~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (532)
.+.+||.+.+-|.-|..+-.-.+..+++. +.+...|+||+.+.-.....++.....++ ......+.......
T Consensus 769 nhnLiGVANvFLE~LF~DvkL~Y~vPIIs-------QqGEVAGRLhVev~Rv~gq~~~~~~ggde-v~e~~~~~~~~~~~ 840 (1714)
T KOG0241|consen 769 NHNLIGVANVFLEVLFHDVKLQYAVPIIS-------QQGEVAGRLHVEVMRVTGQVPERVVGGDE-VVESSGEIIHRVKK 840 (1714)
T ss_pred cccchhhHHHHHHHHHhhheeccccceec-------ccccccceeEEEEEEeccccchhhccccc-cccCCCccccccce
Confidence 46789999988887765544444455543 35789999999997654332211110000 00001111111223
Q ss_pred eEEEEEEeeeecCCCCCCCCCEEEEEEcCeeEEEeeec------CCCCC----cccceEEEEecCC------CCCCeEEE
Q 009539 412 GLLVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVK------KNRDP----RWEEEFQFMLEEP------PTNDRLHV 475 (532)
Q Consensus 412 g~L~v~i~~a~~L~~~~~~dpyv~v~~~~~~~kT~vv~------~t~nP----~w~e~f~f~v~~~------~~~~~l~v 475 (532)
=.-+|+|.+|.+||-+-..=.||+-++-++..-|-++. .+.++ .|+.+-.|.+.-. ..+..|.|
T Consensus 841 ltCrVkIk~AtGLP~~LSnFVFCqYtFw~~~E~~vvaP~vd~ss~~~~~~~~v~FeH~~df~V~vtEeFlE~~~dgALaI 920 (1714)
T KOG0241|consen 841 LTCRVKIKEATGLPLNLSNFVFCQYTFWDQQESTVVAPVVDPSSQSKDAQYTVIFEHCKDFVVNVTEEFLEHISDGALAI 920 (1714)
T ss_pred EEEEEEEeeccCCcccccceEEEEeeecccccceeeeeccccccccCCCCeEEEeecccceEEeehHHHHHHhhcCceEE
Confidence 34568899999999753333566666655433222221 11122 1333323333211 22457999
Q ss_pred EEEEcc
Q 009539 476 EVCSVS 481 (532)
Q Consensus 476 ~V~d~~ 481 (532)
+||-+.
T Consensus 921 EVwGHr 926 (1714)
T KOG0241|consen 921 EVWGHR 926 (1714)
T ss_pred EEeecc
Confidence 999885
No 316
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=23.15 E-value=3.7e+02 Score=22.13 Aligned_cols=57 Identities=23% Similarity=0.358 Sum_probs=37.3
Q ss_pred eEEEEEEEccccccCCCCCceeEEEEEechhhhcc--------------ceeceEEEeCCCC---CeEEEEEEEE
Q 009539 472 RLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSN--------------KRINEKYHLIDSK---NGRIQIELQW 529 (532)
Q Consensus 472 ~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~--------------~~~~~~~~L~~~~---~G~i~l~~~w 529 (532)
.|.+.++.-..+.. ......+|.+.+++.+...+ ......|+|.+.. .|+|.|.++.
T Consensus 30 pl~i~~~~~~~~~~-~~~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~~~~~~~G~I~l~iRL 103 (112)
T PF14924_consen 30 PLYIVVKKVPPGFP-TPPPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFDENGNPVGEISLYIRL 103 (112)
T ss_pred ceEEEEEecCCCCC-CCccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeecCCCceeeeEEEEEEE
Confidence 56776655432100 23567899999999987731 1355789987643 5999888765
No 317
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=22.93 E-value=26 Score=37.71 Aligned_cols=70 Identities=14% Similarity=0.105 Sum_probs=51.1
Q ss_pred CceEEEEEEeeeecCCC------C-CCCCCEEEEEEcCeeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEc
Q 009539 410 GGGLLVVIVHEAQDVEG------K-HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSV 480 (532)
Q Consensus 410 ~~g~L~v~i~~a~~L~~------~-~~~dpyv~v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~ 480 (532)
-.|+...+++.|.+++. + -..++++...++.+..+|+.-.++.+|+|||. ++...+.+.+..+..+|.++
T Consensus 278 ~~gi~ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf~~~~frt~~~~~~e~piyNe~-~~E~~~Fqsn~~l~~kiv~~ 354 (975)
T KOG2419|consen 278 FTGIALLTLIGAEMKYDIVEDVAKLFKDKWLAITSFGEQTFRTEISDDTEKPIYNED-EREDSDFQSNRYLGNKIVGY 354 (975)
T ss_pred hhhhHHHHHhhhhcccchhhhhhhccCCCchheeecchhhhhhhhhccccccccccc-ccccccchhhHHHhhhcccc
Confidence 45677777888887753 1 25789999999999999999999999999997 66666543333444444444
No 318
>PF15361 RIC3: Resistance to inhibitors of cholinesterase homologue 3
Probab=21.68 E-value=9.3 Score=33.77 Aligned_cols=24 Identities=21% Similarity=0.581 Sum_probs=14.0
Q ss_pred cccchhhhhcccchhhhhHhHhheeeeeEEe
Q 009539 2 GVISTIFGFCGFGVGISSGLVIGYFLFIYFQ 32 (532)
Q Consensus 2 ~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~ 32 (532)
|+++|++-.++++++ .|++|+.++
T Consensus 80 g~~~~imPlYtiGI~-------~f~lY~l~K 103 (152)
T PF15361_consen 80 GLMGQIMPLYTIGIV-------LFILYTLFK 103 (152)
T ss_pred chhhhHhHHHHHHHH-------HHHHHHHHH
Confidence 456677777665532 344566555
No 319
>cd07469 CRD_TK_ROR_related Cysteine-rich domain of proteins similar to tyrosine kinase-like orphan receptors. The cysteine-rich domain (CRD) is an essential part of the tyrosine kinase-like orphan receptor (Ror) proteins, a conserved family of tyrosine kinases that function in various processes, including neuronal and skeletal development, cell polarity, and cell movement. Ror proteins are receptors of Wnt proteins, which are key players in a number of fundamental cellular processes in embryogenesis and postnatal development. In different cellular contexts, Ror proteins can either activate or repress transcription of Wnt target genes, and can modulate Wnt signaling by sequestering Wnt ligands.
Probab=21.27 E-value=1.9e+02 Score=25.34 Aligned_cols=39 Identities=21% Similarity=0.383 Sum_probs=32.8
Q ss_pred CCCcchHHHHHHHHh-hchhHHHHHHHHHHHHHHHHHHhc
Q 009539 66 PDYDRVDWLNKFLEL-MWPYLDKAICKTAKNIAKPIIAEQ 104 (532)
Q Consensus 66 ~d~E~~~WlN~~l~~-~Wp~~~~~~~~~i~~~~~~~l~~~ 104 (532)
+..++.+|+|.-|.. +|..+.+.+++.-+...+|+|=-+
T Consensus 27 ~s~~~~~~~~E~l~~~~~~e~~~~ls~~Cr~~A~~~LC~~ 66 (147)
T cd07469 27 SSYADPEGLNEQLTTGLWEELIKTVSELCRPAAEKLLCNY 66 (147)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 467789999988887 899888889999999999888764
No 320
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=20.89 E-value=53 Score=36.97 Aligned_cols=69 Identities=25% Similarity=0.332 Sum_probs=49.9
Q ss_pred CCCceEEEEEEeeeecCCCCCCCCCEEEEEEc-----CeeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcc
Q 009539 408 PAGGGLLVVIVHEAQDVEGKHHTNPYARILFR-----GEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVS 481 (532)
Q Consensus 408 ~~~~g~L~v~i~~a~~L~~~~~~dpyv~v~~~-----~~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~ 481 (532)
+...|.+.+.+++|..+... .+-||...+. ..+-+|+++.+|..|.||+.|+..+-.. +...+..++++
T Consensus 755 pl~ygflh~~vhsat~lkqs--~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~s---qS~r~~~~ek~ 828 (1112)
T KOG4269|consen 755 PLLYGFLHVIVHSATGLKQS--RNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIES---QSSRLEKTEKS 828 (1112)
T ss_pred cccccceeeeeccccccccc--cceeeehhhhhhccccccccceeeecccCCCCChhcccchhhc---cccchhhhccc
Confidence 45678899999999887653 4567766542 2345999999999999999999887643 34555555543
No 321
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=20.80 E-value=13 Score=39.80 Aligned_cols=40 Identities=20% Similarity=0.496 Sum_probs=30.9
Q ss_pred cccCCHHHHHhhcCCCC-CceeCCCCcchHHHHHHHHhhch
Q 009539 44 LVERDSETLQQMLPEIP-LWVKCPDYDRVDWLNKFLELMWP 83 (532)
Q Consensus 44 ~~~~~~~~~~~~~~~~p-~w~~~~d~E~~~WlN~~l~~~Wp 83 (532)
+.....+.++..+.++| .-+.+++.-.+||.|-+++.+.+
T Consensus 69 ls~~~~~~~~~al~nmPiGii~~~e~~~veW~Npf~~~if~ 109 (655)
T COG3887 69 LSYQAEKSLEEALTNMPIGIILFNETNKVEWVNPFASKIFN 109 (655)
T ss_pred HHHHHHHHHHHHHHhCCceEEEEcCCCceEEecHHHHHhcC
Confidence 33344566777788888 45677899999999999999887
Done!