BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009540
(532 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VJ7|A Chain A, Crystal Structure Of The Bifunctional Catalytic Fragment
Of Relseq, The RelaSPOT HOMOLOG FROM STREPTOCOCCUS
EQUISIMILIS.
pdb|1VJ7|B Chain B, Crystal Structure Of The Bifunctional Catalytic Fragment
Of Relseq, The RelaSPOT HOMOLOG FROM STREPTOCOCCUS
EQUISIMILIS
Length = 393
Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 91/233 (39%), Positives = 140/233 (60%), Gaps = 10/233 (4%)
Query: 232 FVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLS 291
FV KA A AH Q+R SG+PY++H ++ A +LA + ++ VA G LHD ++D ++
Sbjct: 27 FVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAVTVACGFLHDVVEDTDIT 86
Query: 292 YDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLI 350
D I FG V D+V+GV+KL ++ + E A M +AM+ D R +L+
Sbjct: 87 LDNIEFDFGKDVRDIVDGVTKLGKVEYKSHEEQLAENH------RKMLMAMSKDIRVILV 140
Query: 351 KLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQH 410
KLADRLHNM TL L K++R ++ET+EI+ PLA+RLGIS K +LE+L F++LN +
Sbjct: 141 KLADRLHNMRTLKHLRKDKQERISRETMEIYAPLAHRLGISRIKWELEDLAFRYLNETEF 200
Query: 411 TELSSKLVECF--DEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKM 461
++S + E EA+V + K++ ++ + F + GR K +YSI+ KM
Sbjct: 201 YKISHMMNEKRREREALVDDIVTKIKSYTTEQGL-FGDVYGRPKHIYSIYRKM 252
>pdb|3NR1|A Chain A, A Metazoan Ortholog Of Spot Hydrolyzes Ppgpp And Plays A
Role In Starvation Responses
pdb|3NR1|B Chain B, A Metazoan Ortholog Of Spot Hydrolyzes Ppgpp And Plays A
Role In Starvation Responses
Length = 178
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 81/172 (47%), Gaps = 21/172 (12%)
Query: 240 AERAHRGQMR--ASGDPYLLHCVETAMLLA--AIGANSTVVAAGLLHDTLDDAFLSYDYI 295
A R HR Q R G PY+ H + A +L A + V+ A LLHDT++D + D +
Sbjct: 14 AARKHRQQRRKDPEGTPYINHPIGVARILTHEAGITDIVVLQAALLHDTVEDTDTTLDEV 73
Query: 296 FRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADR 355
FGA V LVE V+ L KL R+ RL + A L+KLAD+
Sbjct: 74 ELHFGAQVRRLVEEVTDDKTLPKLERK-----------RLQVEQAPHSSPGAKLVKLADK 122
Query: 356 LHNMMTLDALPLCKRQRFAKETLEIFVPLANRL--GISTWKVQLENLCFKHL 405
L+N+ L+ C + +++ ++ + A ++ G+ QLE KHL
Sbjct: 123 LYNLRDLNR---CTPEGWSEHRVQEYFEWAAQVVKGLQGTNRQLEE-ALKHL 170
>pdb|3NQW|A Chain A, A Metazoan Ortholog Of Spot Hydrolyzes Ppgpp And Plays A
Role In Starvation Responses
pdb|3NQW|B Chain B, A Metazoan Ortholog Of Spot Hydrolyzes Ppgpp And Plays A
Role In Starvation Responses
Length = 179
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 58/123 (47%), Gaps = 15/123 (12%)
Query: 244 HRGQMRASGD--PYLLHCVETAMLLA--AIGANSTVVAAGLLHDTLDDAFLSYDYIFRTF 299
HR Q R PY+ H + + +L+ A + V+ A LLHD ++D S++ + + F
Sbjct: 20 HRQQRRKDPQETPYVNHVINVSTILSVEACITDEGVLMAALLHDVVEDTDASFEDVEKLF 79
Query: 300 GAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNM 359
G V LV V+ L K R+ RL A + RA LIKLAD+L N+
Sbjct: 80 GPDVCGLVREVTDDKSLEKQERK-----------RLQIENAAKSSCRAKLIKLADKLDNL 128
Query: 360 MTL 362
L
Sbjct: 129 RDL 131
>pdb|3P47|A Chain A, Crystal Structure Of Entamoeba Histolytica Serine
Acetyltransferase 1 In Complex With L-Cysteine
Length = 315
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 15/93 (16%)
Query: 423 EAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKM-LKYALPSLPNLIRESFVTEY 481
E+ + S + KL +KD ++ + L++ C M + LPS+ ++ + Y
Sbjct: 60 ESHIASELTKLVDYIKDSVTAY------NDELFAHQCVMAILEKLPSIKRTLKTDLIAAY 113
Query: 482 S--------SLSHACFQKFQLLTIHGIGHILWK 506
+ SL C+ FQ + ++ I H+L++
Sbjct: 114 AGDPAAPGLSLIIRCYPGFQAVIVYRIAHVLYE 146
>pdb|3Q1X|A Chain A, Crystal Structure Of Entamoeba Histolytica Serine
Acetyltransferase 1 In Complex With L-Serine
Length = 313
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 15/93 (16%)
Query: 423 EAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKM-LKYALPSLPNLIRESFVTEY 481
E+ + S + KL +KD ++ + L++ C M + LPS+ ++ + Y
Sbjct: 58 ESHIASELTKLVDYIKDSVTAY------NDELFAHQCVMAILEKLPSIKRTLKTDLIAAY 111
Query: 482 S--------SLSHACFQKFQLLTIHGIGHILWK 506
+ SL C+ FQ + ++ I H+L++
Sbjct: 112 AGDPAAPGLSLIIRCYPGFQAVIVYRIAHVLYE 144
>pdb|3P1B|A Chain A, Crystal Structure Of The Native Serine Acetyltransferase 1
From Entamoeba Histolytica
Length = 314
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 15/93 (16%)
Query: 423 EAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKM-LKYALPSLPNLIRESFVTEY 481
E+ + S + KL +KD ++ + L++ C M + LPS+ ++ + Y
Sbjct: 59 ESHIASELTKLVDYIKDSVTAY------NDELFAHQCVMAILEKLPSIKRTLKTDLIAAY 112
Query: 482 S--------SLSHACFQKFQLLTIHGIGHILWK 506
+ SL C+ FQ + ++ I H+L++
Sbjct: 113 AGDPAAPGLSLIIRCYPGFQAVIVYRIAHVLYE 145
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,910,427
Number of Sequences: 62578
Number of extensions: 456396
Number of successful extensions: 824
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 817
Number of HSP's gapped (non-prelim): 6
length of query: 532
length of database: 14,973,337
effective HSP length: 103
effective length of query: 429
effective length of database: 8,527,803
effective search space: 3658427487
effective search space used: 3658427487
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)