BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009540
(532 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P74007|SPOT_SYNY3 Probable guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=spoT
PE=3 SV=1
Length = 760
Score = 176 bits (446), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 101/233 (43%), Positives = 142/233 (60%), Gaps = 9/233 (3%)
Query: 232 FVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLS 291
+ +AF A H Q R SG+PY+ H V A LL +G + ++AAG LHD ++D +S
Sbjct: 53 LICRAFCFAYDLHAQQRRKSGEPYIAHPVAVAGLLRDLGGDEAMIAAGFLHDVVEDTDIS 112
Query: 292 YDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLI 350
+ I FG A LVEGV+KLS+ N +++ +A+ MFLAMA D R +++
Sbjct: 113 IEQIEALFGEETASLVEGVTKLSKF------NFSSTTEHQAENFRRMFLAMAKDIRVIVV 166
Query: 351 KLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQH 410
KLADRLHNM TLDAL K++R A+ET +IF PLANRLGI +K +LE+L FK+L PD +
Sbjct: 167 KLADRLHNMRTLDALSPEKQRRIARETKDIFAPLANRLGIWRFKWELEDLSFKYLEPDSY 226
Query: 411 TELSSKLVECFD--EAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKM 461
++ S +VE E+ + + + L L+D+ I L GR K LY I+ KM
Sbjct: 227 RKIQSLVVEKRGDRESRLETVKDMLRFRLRDEGIEHFELQGRPKHLYGIYYKM 279
>sp|O54408|RELA_BACSU GTP pyrophosphokinase OS=Bacillus subtilis (strain 168) GN=relA
PE=3 SV=3
Length = 734
Score = 169 bits (428), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 94/234 (40%), Positives = 142/234 (60%), Gaps = 10/234 (4%)
Query: 232 FVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLS 291
FV KA+ AE AHR Q R SG+PY++H ++ A +L + + + +A G LHD ++D ++
Sbjct: 27 FVEKAYLYAEDAHREQYRKSGEPYIIHPIQVAGILVDLEMDPSTIAGGFLHDVVEDTDVT 86
Query: 292 YDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLI 350
D + F VA LV+GV+KL ++ ++E +A+ MF+AMA D R +LI
Sbjct: 87 LDDLKEAFSEEVAMLVDGVTKLGKIKYKSQEEQ------QAENHRKMFVAMAQDIRVILI 140
Query: 351 KLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQH 410
KLADRLHNM TL LP K++R + ETLEIF PLA+RLGIS K +LE+ ++LNP Q+
Sbjct: 141 KLADRLHNMRTLKHLPQEKQRRISNETLEIFAPLAHRLGISKIKWELEDTALRYLNPQQY 200
Query: 411 TELSS--KLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKML 462
+ + K E V + ++++ +++ NI GR K +YSI+ KM+
Sbjct: 201 YRIVNLMKKKRAERELYVDEVVNEVKKRVEEVNIK-ADFSGRPKHIYSIYRKMV 253
>sp|Q8CS97|RELA_STAES GTP pyrophosphokinase OS=Staphylococcus epidermidis (strain ATCC
12228) GN=relA PE=3 SV=1
Length = 729
Score = 165 bits (418), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 86/236 (36%), Positives = 148/236 (62%), Gaps = 10/236 (4%)
Query: 231 DFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFL 290
++V+K+++ A AH+GQ R +G PY++H ++ A +L + + + AG LHD ++D
Sbjct: 26 EYVLKSYHIAYEAHKGQFRKNGLPYIMHPIQVAGILTEMRLDGPTIVAGFLHDVIEDTSY 85
Query: 291 SYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVL 349
+++ + F +A +V+GV+KL ++ ++E +A+ +F+A+A D R +L
Sbjct: 86 TFEDVKDMFNEEIARIVDGVTKLKKVKYRSKEEQ------QAENHRKLFIAIAKDVRVIL 139
Query: 350 IKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQ 409
+KLADRLHNM TL A+P K+ R +KETLEI+ PLA+RLGI+T K +LE+ ++++ Q
Sbjct: 140 VKLADRLHNMRTLKAMPREKQVRISKETLEIYAPLAHRLGINTIKWELEDTALRYIDSVQ 199
Query: 410 HTELSS--KLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLK 463
+ + + K EA +T+AI K++ + N+S + GR K +YSI+ KM+K
Sbjct: 200 YFRIVNLMKKKRSEREAYITNAINKIKNEMTKMNLSGEI-NGRPKHIYSIYRKMIK 254
>sp|Q5HNR8|RELA_STAEQ GTP pyrophosphokinase OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=relA PE=3 SV=1
Length = 729
Score = 165 bits (418), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 86/236 (36%), Positives = 148/236 (62%), Gaps = 10/236 (4%)
Query: 231 DFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFL 290
++V+K+++ A AH+GQ R +G PY++H ++ A +L + + + AG LHD ++D
Sbjct: 26 EYVLKSYHIAYEAHKGQFRKNGLPYIMHPIQVAGILTEMRLDGPTIVAGFLHDVIEDTSY 85
Query: 291 SYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVL 349
+++ + F +A +V+GV+KL ++ ++E +A+ +F+A+A D R +L
Sbjct: 86 TFEDVKDMFNEEIARIVDGVTKLKKVKYRSKEEQ------QAENHRKLFIAIAKDVRVIL 139
Query: 350 IKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQ 409
+KLADRLHNM TL A+P K+ R +KETLEI+ PLA+RLGI+T K +LE+ ++++ Q
Sbjct: 140 VKLADRLHNMRTLKAMPREKQVRISKETLEIYAPLAHRLGINTIKWELEDTALRYIDSVQ 199
Query: 410 HTELSS--KLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLK 463
+ + + K EA +T+AI K++ + N+S + GR K +YSI+ KM+K
Sbjct: 200 YFRIVNLMKKKRSEREAYITNAINKIKNEMTKMNLSGEI-NGRPKHIYSIYRKMIK 254
>sp|P0AG26|SPOT_SHIFL Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Shigella flexneri GN=spoT PE=3 SV=1
Length = 702
Score = 163 bits (412), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 95/231 (41%), Positives = 136/231 (58%), Gaps = 10/231 (4%)
Query: 235 KAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDY 294
+A+ A AH GQ R+SG+PY+ H V A +LA + + + A LLHD ++D +Y
Sbjct: 25 QAYLVARDAHEGQTRSSGEPYITHPVAVACILAEMKLDYETLMAALLHDVIEDTPATYQD 84
Query: 295 IFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLA 353
+ + FG VA+LVEGVSKL +L + K +A+ M +AM D R +LIKLA
Sbjct: 85 MEQLFGKSVAELVEGVSKLDKLKFRDK------KEAQAENFRKMIMAMVQDIRVILIKLA 138
Query: 354 DRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTEL 413
DR HNM TL +L KR+R A+ETLEI+ PLA+RLGI K +LE L F+ L P+++ +
Sbjct: 139 DRTHNMRTLGSLRPDKRRRIARETLEIYSPLAHRLGIHHIKTELEELGFEALYPNRYRVI 198
Query: 414 SS--KLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKML 462
K + M+ + ++E L++ I V GR K LYSI+CKM+
Sbjct: 199 KEVVKAARGNRKEMIQKILSEIEGRLQEAGIPCRV-SGREKHLYSIYCKMV 248
>sp|P0AG24|SPOT_ECOLI Bifunctional (p)ppGpp synthase/hydrolase SpoT OS=Escherichia coli
(strain K12) GN=spoT PE=1 SV=1
Length = 702
Score = 163 bits (412), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 95/231 (41%), Positives = 136/231 (58%), Gaps = 10/231 (4%)
Query: 235 KAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDY 294
+A+ A AH GQ R+SG+PY+ H V A +LA + + + A LLHD ++D +Y
Sbjct: 25 QAYLVARDAHEGQTRSSGEPYITHPVAVACILAEMKLDYETLMAALLHDVIEDTPATYQD 84
Query: 295 IFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLA 353
+ + FG VA+LVEGVSKL +L + K +A+ M +AM D R +LIKLA
Sbjct: 85 MEQLFGKSVAELVEGVSKLDKLKFRDK------KEAQAENFRKMIMAMVQDIRVILIKLA 138
Query: 354 DRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTEL 413
DR HNM TL +L KR+R A+ETLEI+ PLA+RLGI K +LE L F+ L P+++ +
Sbjct: 139 DRTHNMRTLGSLRPDKRRRIARETLEIYSPLAHRLGIHHIKTELEELGFEALYPNRYRVI 198
Query: 414 SS--KLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKML 462
K + M+ + ++E L++ I V GR K LYSI+CKM+
Sbjct: 199 KEVVKAARGNRKEMIQKILSEIEGRLQEAGIPCRV-SGREKHLYSIYCKMV 248
>sp|P0AG25|SPOT_ECO57 Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Escherichia coli O157:H7 GN=spoT PE=3 SV=1
Length = 702
Score = 163 bits (412), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 95/231 (41%), Positives = 136/231 (58%), Gaps = 10/231 (4%)
Query: 235 KAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDY 294
+A+ A AH GQ R+SG+PY+ H V A +LA + + + A LLHD ++D +Y
Sbjct: 25 QAYLVARDAHEGQTRSSGEPYITHPVAVACILAEMKLDYETLMAALLHDVIEDTPATYQD 84
Query: 295 IFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLA 353
+ + FG VA+LVEGVSKL +L + K +A+ M +AM D R +LIKLA
Sbjct: 85 MEQLFGKSVAELVEGVSKLDKLKFRDK------KEAQAENFRKMIMAMVQDIRVILIKLA 138
Query: 354 DRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTEL 413
DR HNM TL +L KR+R A+ETLEI+ PLA+RLGI K +LE L F+ L P+++ +
Sbjct: 139 DRTHNMRTLGSLRPDKRRRIARETLEIYSPLAHRLGIHHIKTELEELGFEALYPNRYRVI 198
Query: 414 SS--KLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKML 462
K + M+ + ++E L++ I V GR K LYSI+CKM+
Sbjct: 199 KEVVKAARGNRKEMIQKILSEIEGRLQEAGIPCRV-SGREKHLYSIYCKMV 248
>sp|O52177|RELA_MYXXA GTP pyrophosphokinase OS=Myxococcus xanthus GN=relA PE=3 SV=1
Length = 757
Score = 162 bits (411), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 90/234 (38%), Positives = 142/234 (60%), Gaps = 7/234 (2%)
Query: 231 DFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFL 290
D + KA+ + + H+GQ+R SG+PYL+H +E A +L + + + GLLHDT++D
Sbjct: 39 DIIKKAYVYSAKVHQGQLRKSGEPYLVHPLEVAGILGELKLDEASIVTGLLHDTIEDTLA 98
Query: 291 SYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVL 349
+ + + FG+ VA LV+GV+KLS+ S A + + + +A+ M +AMA D R +L
Sbjct: 99 TEEELTELFGSEVAHLVDGVTKLSKFSASA---SLSQEEKQAENFRKMIIAMAQDIRVIL 155
Query: 350 IKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQ 409
+KLADR HNM TLD + K+ R A+ETL+I+ PLANRLGIS K +LE+L F+++ P +
Sbjct: 156 VKLADRTHNMRTLDHMSEEKQARIAQETLDIYAPLANRLGISWIKTELEDLSFRYVKPQE 215
Query: 410 HTELSSKL--VECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKM 461
L +KL + E + + + L ++ + V GR K +YSI+ K+
Sbjct: 216 FFALQAKLNKRKKEREKYIEDTCDLIRSKLAERGLKGEV-SGRFKHVYSIYKKI 268
>sp|P0A0E9|RELA_STAAW GTP pyrophosphokinase OS=Staphylococcus aureus (strain MW2) GN=relA
PE=3 SV=1
Length = 736
Score = 161 bits (407), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 84/236 (35%), Positives = 146/236 (61%), Gaps = 10/236 (4%)
Query: 231 DFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFL 290
++V+K+++ A AH+GQ R +G PY++H ++ A +L + + + AG LHD ++D
Sbjct: 33 EYVLKSYHIAYEAHKGQFRKNGLPYIMHPIQVAGILTEMRLDGPTIVAGFLHDVIEDTPY 92
Query: 291 SYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVL 349
+++ + F VA +V+GV+KL ++ ++E +A+ +F+A+A D R +L
Sbjct: 93 TFEDVKEMFNEEVARIVDGVTKLKKVKYRSKEEQ------QAENHRKLFIAIAKDVRVIL 146
Query: 350 IKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQ 409
+KLADRLHNM TL A+P K+ R ++ETLEI+ PLA+RLGI+T K +LE+ ++++ Q
Sbjct: 147 VKLADRLHNMRTLKAMPREKQIRISRETLEIYAPLAHRLGINTIKWELEDTALRYIDNVQ 206
Query: 410 HTELSS--KLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLK 463
+ + + K EA + +AI+++ + NI + GR K +YSI+ KM+K
Sbjct: 207 YFRIVNLMKKKRSEREAYIETAIDRIRTEMDRMNIEGDI-NGRPKHIYSIYRKMMK 261
>sp|P0A0F0|RELA_STAAU GTP pyrophosphokinase OS=Staphylococcus aureus GN=relA PE=3 SV=1
Length = 736
Score = 161 bits (407), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 84/236 (35%), Positives = 146/236 (61%), Gaps = 10/236 (4%)
Query: 231 DFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFL 290
++V+K+++ A AH+GQ R +G PY++H ++ A +L + + + AG LHD ++D
Sbjct: 33 EYVLKSYHIAYEAHKGQFRKNGLPYIMHPIQVAGILTEMRLDGPTIVAGFLHDVIEDTPY 92
Query: 291 SYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVL 349
+++ + F VA +V+GV+KL ++ ++E +A+ +F+A+A D R +L
Sbjct: 93 TFEDVKEMFNEEVARIVDGVTKLKKVKYRSKEEQ------QAENHRKLFIAIAKDVRVIL 146
Query: 350 IKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQ 409
+KLADRLHNM TL A+P K+ R ++ETLEI+ PLA+RLGI+T K +LE+ ++++ Q
Sbjct: 147 VKLADRLHNMRTLKAMPREKQIRISRETLEIYAPLAHRLGINTIKWELEDTALRYIDNVQ 206
Query: 410 HTELSS--KLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLK 463
+ + + K EA + +AI+++ + NI + GR K +YSI+ KM+K
Sbjct: 207 YFRIVNLMKKKRSEREAYIETAIDRIRTEMDRMNIEGDI-NGRPKHIYSIYRKMMK 261
>sp|Q6G8T5|RELA_STAAS GTP pyrophosphokinase OS=Staphylococcus aureus (strain MSSA476)
GN=relA PE=3 SV=1
Length = 736
Score = 161 bits (407), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 84/236 (35%), Positives = 146/236 (61%), Gaps = 10/236 (4%)
Query: 231 DFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFL 290
++V+K+++ A AH+GQ R +G PY++H ++ A +L + + + AG LHD ++D
Sbjct: 33 EYVLKSYHIAYEAHKGQFRKNGLPYIMHPIQVAGILTEMRLDGPTIVAGFLHDVIEDTPY 92
Query: 291 SYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVL 349
+++ + F VA +V+GV+KL ++ ++E +A+ +F+A+A D R +L
Sbjct: 93 TFEDVKEMFNEEVARIVDGVTKLKKVKYRSKEEQ------QAENHRKLFIAIAKDVRVIL 146
Query: 350 IKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQ 409
+KLADRLHNM TL A+P K+ R ++ETLEI+ PLA+RLGI+T K +LE+ ++++ Q
Sbjct: 147 VKLADRLHNMRTLKAMPREKQIRISRETLEIYAPLAHRLGINTIKWELEDTALRYIDNVQ 206
Query: 410 HTELSS--KLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLK 463
+ + + K EA + +AI+++ + NI + GR K +YSI+ KM+K
Sbjct: 207 YFRIVNLMKKKRSEREAYIETAIDRIRTEMDRMNIEGDI-NGRPKHIYSIYRKMMK 261
>sp|Q99TL8|RELA_STAAN GTP pyrophosphokinase OS=Staphylococcus aureus (strain N315)
GN=relA PE=1 SV=2
Length = 736
Score = 161 bits (407), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 84/236 (35%), Positives = 146/236 (61%), Gaps = 10/236 (4%)
Query: 231 DFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFL 290
++V+K+++ A AH+GQ R +G PY++H ++ A +L + + + AG LHD ++D
Sbjct: 33 EYVLKSYHIAYEAHKGQFRKNGLPYIMHPIQVAGILTEMRLDGPTIVAGFLHDVIEDTPY 92
Query: 291 SYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVL 349
+++ + F VA +V+GV+KL ++ ++E +A+ +F+A+A D R +L
Sbjct: 93 TFEDVKEMFNEEVARIVDGVTKLKKVKYRSKEEQ------QAENHRKLFIAIAKDVRVIL 146
Query: 350 IKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQ 409
+KLADRLHNM TL A+P K+ R ++ETLEI+ PLA+RLGI+T K +LE+ ++++ Q
Sbjct: 147 VKLADRLHNMRTLKAMPREKQIRISRETLEIYAPLAHRLGINTIKWELEDTALRYIDNVQ 206
Query: 410 HTELSS--KLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLK 463
+ + + K EA + +AI+++ + NI + GR K +YSI+ KM+K
Sbjct: 207 YFRIVNLMKKKRSEREAYIETAIDRIRTEMDRMNIEGDI-NGRPKHIYSIYRKMMK 261
>sp|Q6GG70|RELA_STAAR GTP pyrophosphokinase OS=Staphylococcus aureus (strain MRSA252)
GN=relA PE=3 SV=1
Length = 736
Score = 161 bits (407), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 84/236 (35%), Positives = 146/236 (61%), Gaps = 10/236 (4%)
Query: 231 DFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFL 290
++V+K+++ A AH+GQ R +G PY++H ++ A +L + + + AG LHD ++D
Sbjct: 33 EYVLKSYHIAYEAHKGQFRKNGLPYIMHPIQVAGILTEMRLDGPTIVAGFLHDVIEDTPY 92
Query: 291 SYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVL 349
+++ + F VA +V+GV+KL ++ ++E +A+ +F+A+A D R +L
Sbjct: 93 TFEDVKEMFNEEVARIVDGVTKLKKVKYRSKEEQ------QAENHRKLFIAIAKDVRVIL 146
Query: 350 IKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQ 409
+KLADRLHNM TL A+P K+ R ++ETLEI+ PLA+RLGI+T K +LE+ ++++ Q
Sbjct: 147 VKLADRLHNMRTLKAMPREKQIRISRETLEIYAPLAHRLGINTIKWELEDTALRYIDNVQ 206
Query: 410 HTELSS--KLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLK 463
+ + + K EA + +AI+++ + NI + GR K +YSI+ KM+K
Sbjct: 207 YFRIVNLMKKKRSEREAYIETAIDRIRTEMDRMNIEGDI-NGRPKHIYSIYRKMMK 261
>sp|Q931Q4|RELA_STAAM GTP pyrophosphokinase OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=relA PE=3 SV=2
Length = 736
Score = 158 bits (400), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 83/236 (35%), Positives = 145/236 (61%), Gaps = 10/236 (4%)
Query: 231 DFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFL 290
++V+K+++ A AH+GQ R +G PY++H ++ A +L + + + AG LHD ++D
Sbjct: 33 EYVLKSYHIAYEAHKGQFRKNGLPYIMHPIQVAGILTEMRLDGPTIVAGFLHDVIEDTPY 92
Query: 291 SYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVL 349
+++ + F VA +V+GV+KL ++ ++E +A+ +F+A+A D R +L
Sbjct: 93 TFEDVKEMFNEEVARIVDGVTKLKKVKYRSKEEQ------QAENHRKLFIAIAKDVRVIL 146
Query: 350 IKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQ 409
+KLADRLHNM TL A+P K+ R ++ETLEI+ PLA+ LGI+T K +LE+ ++++ Q
Sbjct: 147 VKLADRLHNMRTLKAMPREKQIRISRETLEIYAPLAHHLGINTIKWELEDTALRYIDNVQ 206
Query: 410 HTELSS--KLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLK 463
+ + + K EA + +AI+++ + NI + GR K +YSI+ KM+K
Sbjct: 207 YFRIVNLMKKKRSEREAYIETAIDRIRTEMDRMNIEGDI-NGRPKHIYSIYRKMMK 261
>sp|O87331|RELA_CORGL GTP pyrophosphokinase OS=Corynebacterium glutamicum (strain ATCC
13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025)
GN=relA PE=3 SV=2
Length = 760
Score = 156 bits (395), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/231 (38%), Positives = 142/231 (61%), Gaps = 12/231 (5%)
Query: 235 KAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDY 294
+A+ AER H G +R SGDPY+ H + A + A IG ++T + A LLHDT++D S D
Sbjct: 57 RAYDTAERLHDGVIRKSGDPYITHPLAVATIAAEIGMDTTTLVAALLHDTVEDTDYSLDD 116
Query: 295 IFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLA 353
+ R FG VA LV+GV+KL +++ A EA+ + M +AM+ D R ++IK+A
Sbjct: 117 LTRDFGEEVARLVDGVTKLDKVALGA--------AAEAETIRKMIVAMSQDPRVLVIKVA 168
Query: 354 DRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTEL 413
DRLHNM T+ LP K+ + A++TLE+ PLA+RLG+++ K +LE+L F L P ++ E+
Sbjct: 169 DRLHNMRTMRFLPPEKQAKKARQTLEVIAPLAHRLGMASVKWELEDLSFAILYPKKYEEI 228
Query: 414 SSKLVECFD--EAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKML 462
+ + + + I+++ L++ NI+ VL GR K +SI+ KM+
Sbjct: 229 VRLVADRAPSRDRYLKEIIDQVTGGLRENNIAAEVL-GRPKHYWSIYQKMI 278
>sp|P52560|RELA_STRCO GTP pyrophosphokinase OS=Streptomyces coelicolor (strain ATCC
BAA-471 / A3(2) / M145) GN=relA PE=3 SV=1
Length = 847
Score = 156 bits (394), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 94/234 (40%), Positives = 140/234 (59%), Gaps = 18/234 (7%)
Query: 235 KAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDY 294
+A+ AER HRGQ R SGDPY+ H + +LA +G + + AGLLHDT++D +
Sbjct: 129 RAYQVAERWHRGQKRKSGDPYITHPLAVTTILAELGMDPATLMAGLLHDTVEDTEYGLED 188
Query: 295 IFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLA 353
+ R FG V LV+GV+KL ++ + +A+ + M +AMA D R ++IKLA
Sbjct: 189 LRRDFGDVVTLLVDGVTKLDKVK--------FGEAAQAETVRKMVVAMAKDPRVLVIKLA 240
Query: 354 DRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTEL 413
DRLHNM T+ L K+++ A+ETLEI+ PLA+RLG++T K +LE+L F L P + E+
Sbjct: 241 DRLHNMRTMRYLKREKQEKKARETLEIYAPLAHRLGMNTIKWELEDLAFAILYPKMYDEI 300
Query: 414 SSKLVE---CFDE--AMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKML 462
+ E DE A+VT ++++Q L+ I V GR K YS++ KM+
Sbjct: 301 VRLVAERAPKRDEYLAVVT---DEVQQDLRAARIKATV-TGRPKHYYSVYQKMI 350
>sp|Q54089|RELA_STREQ Bifunctional (p)ppGpp synthase/hydrolase RelA OS=Streptococcus
dysgalactiae subsp. equisimilis GN=relA PE=1 SV=1
Length = 739
Score = 155 bits (393), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 91/233 (39%), Positives = 141/233 (60%), Gaps = 10/233 (4%)
Query: 232 FVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLS 291
FV KA A AH Q+R SG+PY++H ++ A +LA + ++ VA G LHD ++D ++
Sbjct: 27 FVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAVTVACGFLHDVVEDTDIT 86
Query: 292 YDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLI 350
D I FG V D+V+GV+KL ++ + E A + M +AM+ D R +L+
Sbjct: 87 LDNIEFDFGKDVRDIVDGVTKLGKVEYKSHEEQLA------ENHRKMLMAMSKDIRVILV 140
Query: 351 KLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQH 410
KLADRLHNM TL L K++R ++ET+EI+ PLA+RLGIS K +LE+L F++LN +
Sbjct: 141 KLADRLHNMRTLKHLRKDKQERISRETMEIYAPLAHRLGISRIKWELEDLAFRYLNETEF 200
Query: 411 TELSSKLVECF--DEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKM 461
++S + E EA+V + K++ ++ + F + GR K +YSI+ KM
Sbjct: 201 YKISHMMNEKRREREALVDDIVTKIKSYTTEQGL-FGDVYGRPKHIYSIYRKM 252
>sp|P43811|SPOT_HAEIN Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121
/ KW20 / Rd) GN=spoT PE=3 SV=1
Length = 677
Score = 155 bits (392), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 94/226 (41%), Positives = 134/226 (59%), Gaps = 12/226 (5%)
Query: 240 AERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTF 299
A AH GQ R+SG+PY+ H V A ++A + + V A LLHD ++D + + + F
Sbjct: 3 ARDAHEGQFRSSGEPYITHPVAVASIIAQLHLDHEAVMAALLHDVIEDTPYTEEQLKEEF 62
Query: 300 GAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHN 358
GA VA++V+GVSKL +L R+ + + M LAM D R VLIKLADR HN
Sbjct: 63 GASVAEIVDGVSKLDKLKFRTRQE------AQVENFRKMILAMTRDIRVVLIKLADRTHN 116
Query: 359 MMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLV 418
M TL +L KR+R AKETLEI+ PLA+RLGI K +LE+L F+ ++P ++ E+ KLV
Sbjct: 117 MRTLGSLRPDKRRRIAKETLEIYCPLAHRLGIEHIKNELEDLSFQAMHPHRY-EVLKKLV 175
Query: 419 ECFDEAMVTSAIEKLEQALK---DKNISFLVLCGRHKSLYSIHCKM 461
+ + IE++ Q +K + + F + GR K LY I+ KM
Sbjct: 176 DVA-RSNRQDLIERISQEIKVRLENSGIFARVWGREKHLYKIYQKM 220
>sp|Q9KNM2|SPOT_VIBCH Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Vibrio
cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba
N16961) GN=spoT PE=1 SV=1
Length = 705
Score = 155 bits (392), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 98/256 (38%), Positives = 149/256 (58%), Gaps = 17/256 (6%)
Query: 209 NLETYAKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAA 268
+L+ A+E+L Q++ R+ +V+ A AH GQ R+SG+PY++H V A +LA
Sbjct: 6 SLKDVAQEYLTEPQIE--ALRQSYVV-----ARDAHEGQTRSSGEPYIIHPVAVARILAE 58
Query: 269 IGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASK 328
+ + + A LLHD ++D ++ + + FG+ VA+LV+GVSKL +L R K
Sbjct: 59 MRLDLETLQAALLHDVIEDCDVTKEDLDAHFGSSVAELVDGVSKLDKLKFRDR------K 112
Query: 329 TVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANR 387
+A+ M LAM D R +LIKLADR NM TL AL K++R A+ETLEI+ PLA+R
Sbjct: 113 EAQAENFRKMVLAMVQDIRVILIKLADRTPNMRTLGALRPDKKRRIARETLEIYAPLAHR 172
Query: 388 LGISTWKVQLENLCFKHLNPDQHTELSS--KLVECFDEAMVTSAIEKLEQALKDKNISFL 445
LGI K +LE L F+ L P+++ L K + M+ ++E L++ +
Sbjct: 173 LGIHNIKTELEELGFEALYPNRYRVLKEVVKAARGNRKEMIQRIHSEIEGRLQEVGLPAR 232
Query: 446 VLCGRHKSLYSIHCKM 461
V+ GR K+L+SI+ KM
Sbjct: 233 VV-GREKNLFSIYNKM 247
>sp|O85709|RELA_STRAT GTP pyrophosphokinase OS=Streptomyces antibioticus GN=relA PE=3
SV=1
Length = 841
Score = 153 bits (387), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 93/234 (39%), Positives = 139/234 (59%), Gaps = 18/234 (7%)
Query: 235 KAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDY 294
KA+ AER HRGQ R SGDPY+ H + +LA +G + + AGLLHD+ +D D
Sbjct: 126 KAYQVAERWHRGQKRKSGDPYITHPLAVTTILAELGMDPATLMAGLLHDSREDTEYGLDD 185
Query: 295 IFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLA 353
+ R FG V LV+GV+KL ++ + +A+ + M +AMA D R ++IKLA
Sbjct: 186 LRRDFGDVVGLLVDGVTKLDKVK--------FGEAAQAETVRKMVVAMAKDPRVLVIKLA 237
Query: 354 DRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTEL 413
DRLHNM T+ L K+++ A+ETLEI+ PLA+RLG++T K +LE+L F L P + E+
Sbjct: 238 DRLHNMRTMRYLKREKQEKKARETLEIYAPLAHRLGMNTIKWELEDLAFAILYPKMYDEI 297
Query: 414 SSKLVE---CFDE--AMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKML 462
+ E DE A+VT ++++ L+ + I V GR K YS++ K++
Sbjct: 298 VRLVAERAPKRDEYLAIVT---DEVQSDLRARRIKATV-TGRPKHYYSVYQKII 347
>sp|Q8YG65|RSH_BRUME GTP pyrophosphokinase rsh OS=Brucella melitensis biotype 1 (strain
16M / ATCC 23456 / NCTC 10094) GN=rsh PE=1 SV=2
Length = 750
Score = 153 bits (387), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 88/250 (35%), Positives = 139/250 (55%), Gaps = 12/250 (4%)
Query: 216 EFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTV 275
E + Q E + KA+ A + HR Q RASGDPY H +E A +L + +
Sbjct: 6 ELVERVQRYKPDVNEALLNKAYVYAMQKHRSQKRASGDPYFSHPLEVAAILTDMHLDEAT 65
Query: 276 VAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRL 335
+A LLHDT++D + I + FG + LVEG++KL +L +++ K V+A+ L
Sbjct: 66 IAIALLHDTIEDTTATRQEIDQLFGPEIGKLVEGLTKLKKLDLVSK------KAVQAENL 119
Query: 336 HTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWK 394
+ LA++ D R +L+KLADRLHNM TL + KR R A+ET++I+ PLA R+G+ +
Sbjct: 120 RKLLLAISEDVRVLLVKLADRLHNMRTLGVMREDKRLRIAEETMDIYAPLAGRMGMQDMR 179
Query: 395 VQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALK---DKNISFLVLCGRH 451
+LE L F+++NPD ++ +L E ++ ++K+E L +KN + R
Sbjct: 180 EELEELAFRYINPDAWRAVTDRLAELLEKN--RGLLQKIETDLSEIFEKNGIKASVKSRQ 237
Query: 452 KSLYSIHCKM 461
K +S+ KM
Sbjct: 238 KKPWSVFRKM 247
>sp|A5VPI9|RSH_BRUO2 GTP pyrophosphokinase rsh OS=Brucella ovis (strain ATCC 25840 /
63/290 / NCTC 10512) GN=rsh PE=3 SV=1
Length = 750
Score = 150 bits (378), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 87/250 (34%), Positives = 138/250 (55%), Gaps = 12/250 (4%)
Query: 216 EFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTV 275
E + Q E + KA+ A + H Q RASGDPY H +E A +L + +
Sbjct: 6 ELVERVQRYKPDVNEALLNKAYVYAMQKHGSQKRASGDPYFSHPLEVAAILTDMHLDEAT 65
Query: 276 VAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRL 335
+A LLHDT++D + I + FG + LVEG++KL +L +++ K V+A+ L
Sbjct: 66 IAIALLHDTIEDTTATRQEIDQLFGPEIGKLVEGLTKLKKLDLVSK------KAVQAENL 119
Query: 336 HTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWK 394
+ LA++ D R +L+KLADRLHNM TL + KR R A+ET++I+ PLA R+G+ +
Sbjct: 120 RKLLLAISEDVRVLLVKLADRLHNMRTLGVMREDKRLRIAEETMDIYAPLAGRMGMQDMR 179
Query: 395 VQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALK---DKNISFLVLCGRH 451
+LE L F+++NPD ++ +L E ++ ++K+E L +KN + R
Sbjct: 180 EELEELAFRYINPDAWRAVTDRLAELLEKN--RGLLQKIETDLSEIFEKNGIKASVKSRQ 237
Query: 452 KSLYSIHCKM 461
K +S+ KM
Sbjct: 238 KKPWSVFRKM 247
>sp|Q57E90|RSH_BRUAB GTP pyrophosphokinase rsh OS=Brucella abortus biovar 1 (strain
9-941) GN=rsh PE=1 SV=1
Length = 750
Score = 150 bits (378), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 87/250 (34%), Positives = 138/250 (55%), Gaps = 12/250 (4%)
Query: 216 EFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTV 275
E + Q E + KA+ A + H Q RASGDPY H +E A +L + +
Sbjct: 6 ELVERVQRYKPDVNEALLNKAYVYAMQKHGSQKRASGDPYFSHPLEVAAILTDMHLDEAT 65
Query: 276 VAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRL 335
+A LLHDT++D + I + FG + LVEG++KL +L +++ K V+A+ L
Sbjct: 66 IAIALLHDTIEDTTATRQEIDQLFGPEIGKLVEGLTKLKKLDLVSK------KAVQAENL 119
Query: 336 HTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWK 394
+ LA++ D R +L+KLADRLHNM TL + KR R A+ET++I+ PLA R+G+ +
Sbjct: 120 RKLLLAISEDVRVLLVKLADRLHNMRTLGVMREDKRLRIAEETMDIYAPLAGRMGMQDMR 179
Query: 395 VQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALK---DKNISFLVLCGRH 451
+LE L F+++NPD ++ +L E ++ ++K+E L +KN + R
Sbjct: 180 EELEELAFRYINPDAWRAVTDRLAELLEKN--RGLLQKIETDLSEIFEKNGIKASVKSRQ 237
Query: 452 KSLYSIHCKM 461
K +S+ KM
Sbjct: 238 KKPWSVFRKM 247
>sp|Q2YN11|RSH_BRUA2 GTP pyrophosphokinase rsh OS=Brucella abortus (strain 2308) GN=rsh
PE=3 SV=1
Length = 750
Score = 150 bits (378), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 87/250 (34%), Positives = 138/250 (55%), Gaps = 12/250 (4%)
Query: 216 EFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTV 275
E + Q E + KA+ A + H Q RASGDPY H +E A +L + +
Sbjct: 6 ELVERVQRYKPDVNEALLNKAYVYAMQKHGSQKRASGDPYFSHPLEVAAILTDMHLDEAT 65
Query: 276 VAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRL 335
+A LLHDT++D + I + FG + LVEG++KL +L +++ K V+A+ L
Sbjct: 66 IAIALLHDTIEDTTATRQEIDQLFGPEIGKLVEGLTKLKKLDLVSK------KAVQAENL 119
Query: 336 HTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWK 394
+ LA++ D R +L+KLADRLHNM TL + KR R A+ET++I+ PLA R+G+ +
Sbjct: 120 RKLLLAISEDVRVLLVKLADRLHNMRTLGVMREDKRLRIAEETMDIYAPLAGRMGMQDMR 179
Query: 395 VQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALK---DKNISFLVLCGRH 451
+LE L F+++NPD ++ +L E ++ ++K+E L +KN + R
Sbjct: 180 EELEELAFRYINPDAWRAVTDRLAELLEKN--RGLLQKIETDLSEIFEKNGIKASVKSRQ 237
Query: 452 KSLYSIHCKM 461
K +S+ KM
Sbjct: 238 KKPWSVFRKM 247
>sp|O34098|SPOT_SPICI Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Spiroplasma citri GN=spoT PE=3 SV=1
Length = 749
Score = 150 bits (378), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 88/231 (38%), Positives = 141/231 (61%), Gaps = 11/231 (4%)
Query: 235 KAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDY 294
KA+ AE H GQ+R SG Y++H + T LA + AGLLHD L+D +++
Sbjct: 29 KAYEYAEEKHHGQVRNSGARYIIHPLWTTFFLAQWRMGPKTLIAGLLHDVLEDTPATFEE 88
Query: 295 IFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLA 353
+ FG +A+LVEGV+K+S A+EN T ++A L ++L+MA D R +++KLA
Sbjct: 89 LQELFGIEIANLVEGVTKVSY---FAKENRTQ---IKAQYLRKLYLSMAKDIRVIIVKLA 142
Query: 354 DRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTEL 413
DRLHN+ T+ L ++Q A+E+LEI+ +A+RLG+ K ++E++ FK +NP Q+ ++
Sbjct: 143 DRLHNLKTIGYLKPERQQIIARESLEIYSAIAHRLGMKAVKQEIEDISFKIINPVQYNKI 202
Query: 414 SSKLVECFD---EAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKM 461
S L+E + E + IE+L++ L + + + GR KS+YSI+ KM
Sbjct: 203 VS-LLESSNKERENTINQKIEELKKILITEKKMSVKVYGRSKSIYSIYRKM 252
>sp|Q8CY42|RSH_BRUSU GTP pyrophosphokinase rsh OS=Brucella suis biovar 1 (strain 1330)
GN=rsh PE=1 SV=1
Length = 750
Score = 149 bits (376), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 87/250 (34%), Positives = 138/250 (55%), Gaps = 12/250 (4%)
Query: 216 EFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTV 275
E + Q E + KA+ A + H Q RASGDPY H +E A +L + +
Sbjct: 6 ELVERVQRYKPDVNEALLNKAYVYAMQKHGSQKRASGDPYFSHPLEVAAILTDMHLDEAT 65
Query: 276 VAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRL 335
+A LLHDT++D + I + FG + LVEG++KL +L +++ K V+A+ L
Sbjct: 66 IAIALLHDTIEDTTATRQEIDQLFGPEIGKLVEGLTKLKKLDLVSK------KAVQAENL 119
Query: 336 HTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWK 394
+ LA++ D R +L+KLADRLHNM TL + KR R A+ET++I+ PLA R+G+ +
Sbjct: 120 RKLLLAISEDVRVLLVKLADRLHNMRTLGVMCEDKRLRIAEETMDIYAPLAGRMGMQDMR 179
Query: 395 VQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALK---DKNISFLVLCGRH 451
+LE L F+++NPD ++ +L E ++ ++K+E L +KN + R
Sbjct: 180 EELEELAFRYINPDAWRAVTDRLAELLEKN--RGLLQKIETDLSEIFEKNGIKASVKSRQ 237
Query: 452 KSLYSIHCKM 461
K +S+ KM
Sbjct: 238 KKPWSVFRKM 247
>sp|O51216|SPOT_BORBU Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Borrelia burgdorferi (strain ATCC 35210 / B31 / CIP
102532 / DSM 4680) GN=spoT PE=3 SV=1
Length = 667
Score = 149 bits (376), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 97/282 (34%), Positives = 144/282 (51%), Gaps = 17/282 (6%)
Query: 228 FREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDD 287
F + KA AE+ H GQ R SG+PY++H + ++ LA + AGLLHD L+D
Sbjct: 35 FERKSIFKALEIAEQLHYGQYRESGEPYIIHPIMVSLFLAKFQLDFKATIAGLLHDVLED 94
Query: 288 AFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DAR 346
+ + I + F + L++GV+K+ L +N EA+ + MF AM D R
Sbjct: 95 TNVEKEEIVKEFDEEILSLIDGVTKIHDL------HNKTRSIKEANTISKMFFAMTHDIR 148
Query: 347 AVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLN 406
++IKLAD+LHNM TL LP ++ R AK+ L +VP+A RLGIS+ K LE+L FKHL
Sbjct: 149 IIIIKLADKLHNMTTLSYLPKNRQDRIAKDCLSTYVPIAERLGISSLKTYLEDLSFKHLY 208
Query: 407 PDQHTELSSKLVECF--DEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKY 464
P + E+ + L E E + +E+ L+ I + R K YSI KM
Sbjct: 209 PKDYKEIKNFLSETKIEREKKLYKGKLSIEKELQKSGIEAEITV-RSKHFYSIFRKM--- 264
Query: 465 ALPSLPNLIRESFVTEYSSLSHACFQKFQLLTIHGIGHILWK 506
+ N + + F T + C ++ + I I H +WK
Sbjct: 265 --QTRTNKLTQIFDT--LGIRIICKKQKECYEILEIVHRVWK 302
>sp|Q49640|RELA_MYCLE Probable GTP pyrophosphokinase OS=Mycobacterium leprae (strain TN)
GN=relA PE=3 SV=1
Length = 787
Score = 141 bits (356), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/260 (34%), Positives = 138/260 (53%), Gaps = 37/260 (14%)
Query: 215 KEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANST 274
KEF A L V +AF A++ H Q+R SGDPY+ H + A +LA +G + T
Sbjct: 69 KEFYPKANLS-------IVQRAFEVADQRHASQLRRSGDPYITHPLAVANILAELGMDIT 121
Query: 275 VVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADR 334
+ A LLHDT++D + + + FG V LV+GV+KL ++ E +
Sbjct: 122 TLVAALLHDTVEDTGYTLEALSEEFGDEVGHLVDGVTKLDRV--------VLGSAAEGET 173
Query: 335 LHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTW 393
+ M AMA D R ++IK+ADRLHNM T+ LP K+ R A+ETLE+ PLA+RLG+++
Sbjct: 174 IRKMITAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMASV 233
Query: 394 KVQLENLCFKHLNPDQHTEL-----------SSKLVECFDEAMVTSAIEKLEQALKDKNI 442
K +LE+L F L+P ++ E+ + L + E + T K++ ++
Sbjct: 234 KWELEDLSFAILHPKKYEEIVRLVAGRAPSRDTYLAKVRAEIISTLGASKIKATVE---- 289
Query: 443 SFLVLCGRHKSLYSIHCKML 462
GR K +SI+ KM+
Sbjct: 290 ------GRPKHYWSIYQKMI 303
>sp|O67012|SPOT_AQUAE Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Aquifex
aeolicus (strain VF5) GN=spoT PE=3 SV=1
Length = 696
Score = 139 bits (351), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 82/230 (35%), Positives = 132/230 (57%), Gaps = 14/230 (6%)
Query: 235 KAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDY 294
+A+ A+ H Q R +G+PY++H + A+ LA +G + + A LLHDTL+D +Y+
Sbjct: 29 RAYEFAKEKHGEQKRKTGEPYIIHPLNVALKLAELGMDHETIIAALLHDTLEDTDTTYEE 88
Query: 295 IFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLA 353
I FG VA LVEGV+K+ ++ K+ +A+ + LA A D R +L+KL+
Sbjct: 89 IKERFGERVAKLVEGVTKIGKIK---------YKSEQAENYRKLILATAEDPRVILLKLS 139
Query: 354 DRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTEL 413
DRL N+ TL KR++ AKET+EI+ PLA+RLG+ + K +LE+ FK+L P+++ ++
Sbjct: 140 DRLDNVKTLWVFREEKRKKIAKETMEIYAPLAHRLGVWSIKNELEDWAFKYLYPEEYEKV 199
Query: 414 SSKLVEC---FDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCK 460
+ + E +E + I K+ + L+ I + R K YSI K
Sbjct: 200 RNFVKESRKNLEEYLRKYVIPKVRKELEKYGIEAEIKY-RSKHYYSIWEK 248
>sp|P66015|RELA_MYCBO Probable GTP pyrophosphokinase OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=relA PE=3 SV=1
Length = 790
Score = 139 bits (350), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 83/240 (34%), Positives = 133/240 (55%), Gaps = 30/240 (12%)
Query: 235 KAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDY 294
+A+ A++ H Q+R SGDPY+ H + A +LA +G ++T + A LLHDT++D + +
Sbjct: 85 RAYEVADQRHASQLRQSGDPYITHPLAVANILAELGMDTTTLVAALLHDTVEDTGYTLEA 144
Query: 295 IFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLA 353
+ FG V LV+GV+KL ++ E + + M AMA D R ++IK+A
Sbjct: 145 LTEEFGEEVGHLVDGVTKLDRV--------VLGSAAEGETIRKMITAMARDPRVLVIKVA 196
Query: 354 DRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTEL 413
DRLHNM T+ LP K+ R A+ETLE+ PLA+RLG+++ K +LE+L F L+P ++ E+
Sbjct: 197 DRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMASVKWELEDLSFAILHPKKYEEI 256
Query: 414 -----------SSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKML 462
+ L + E + T K++ ++ GR K +SI+ KM+
Sbjct: 257 VRLVAGRAPSRDTYLAKVRAEIVNTLTASKIKATVE----------GRPKHYWSIYQKMI 306
>sp|P66014|RELA_MYCTU Bifunctional (p)ppGpp synthase/hydrolase relA OS=Mycobacterium
tuberculosis GN=relA PE=1 SV=2
Length = 738
Score = 139 bits (349), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 83/240 (34%), Positives = 133/240 (55%), Gaps = 30/240 (12%)
Query: 235 KAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDY 294
+A+ A++ H Q+R SGDPY+ H + A +LA +G ++T + A LLHDT++D + +
Sbjct: 33 RAYEVADQRHASQLRQSGDPYITHPLAVANILAELGMDTTTLVAALLHDTVEDTGYTLEA 92
Query: 295 IFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLA 353
+ FG V LV+GV+KL ++ E + + M AMA D R ++IK+A
Sbjct: 93 LTEEFGEEVGHLVDGVTKLDRV--------VLGSAAEGETIRKMITAMARDPRVLVIKVA 144
Query: 354 DRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTEL 413
DRLHNM T+ LP K+ R A+ETLE+ PLA+RLG+++ K +LE+L F L+P ++ E+
Sbjct: 145 DRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMASVKWELEDLSFAILHPKKYEEI 204
Query: 414 -----------SSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKML 462
+ L + E + T K++ ++ GR K +SI+ KM+
Sbjct: 205 VRLVAGRAPSRDTYLAKVRAEIVNTLTASKIKATVE----------GRPKHYWSIYQKMI 254
>sp|P75386|SPOT_MYCPN Probable guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129)
GN=spoT PE=3 SV=1
Length = 733
Score = 114 bits (284), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 128/233 (54%), Gaps = 4/233 (1%)
Query: 232 FVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLS 291
+ KA +++ H Q R SG+P+ +H + TA+ L +S V AGLLHD ++D ++
Sbjct: 39 LITKALDYSKKWHGEQKRLSGEPFFIHPLRTALRLVEWNMDSNTVCAGLLHDIIEDTQVT 98
Query: 292 YDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFL-AMADARAVLI 350
+ FG + DLV V+K++ SK R+ N + + L + + + + A+++
Sbjct: 99 EADLTAIFGKEITDLVVKVTKITSESKKQRQLNRKKEDLNLKSLVNIAMSSQQEVNALVL 158
Query: 351 KLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQH 410
KLADRL N+ +++ L + K++ AKETLE++ +A R+G+ K QL +L FK L+P
Sbjct: 159 KLADRLDNISSIEFLAVEKQKIIAKETLELYAKIAGRIGMYPVKTQLADLSFKVLDPKNF 218
Query: 411 TELSSKLVE--CFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKM 461
SK+ + F + + ++LE+ L+ I + L R K +YS + K+
Sbjct: 219 NNTLSKINQQKVFYDNEWGNFKKQLEEMLEQNQIEYR-LESRIKGIYSTYQKL 270
>sp|P47520|SPOT_MYCGE Probable guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Mycoplasma genitalium (strain ATCC 33530 / G-37 /
NCTC 10195) GN=spoT PE=3 SV=1
Length = 720
Score = 110 bits (274), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 129/249 (51%), Gaps = 4/249 (1%)
Query: 216 EFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTV 275
+FLA K + + KAFY A+ H Q R SG+P+ +H + TA+ L +
Sbjct: 10 DFLAKIAQKFTNAEIELINKAFYHAKTWHENQKRLSGEPFFIHPLRTALSLVEWNMDPIT 69
Query: 276 VAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRL 335
+ AGLLHD ++D + I F +A+LV V+K++ SK R + +
Sbjct: 70 ICAGLLHDIIEDTDQTEANIAMIFSKEIAELVTKVTKITNESKKQRHLKNKKENLNLKSF 129
Query: 336 HTMFL-AMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWK 394
+ + + + +++KLADRL N+ +++ LP+ K++ AKETLE++ +A R+G+ K
Sbjct: 130 VNIAINSQQEINVMVLKLADRLDNIASIEFLPIEKQKVIAKETLELYAKIAGRIGMYPVK 189
Query: 395 VQLENLCFKHLNPDQHTELSSKL--VECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHK 452
+L +L FK L+ + SK+ + F + + ++L++ L I + L R K
Sbjct: 190 TKLADLSFKVLDLKNYDNTLSKINKQKVFYDNEWDNFKQQLKKILAQNQIEY-QLESRIK 248
Query: 453 SLYSIHCKM 461
+YS + K+
Sbjct: 249 GIYSTYKKL 257
>sp|P55133|RELA_PHOAS GTP pyrophosphokinase OS=Photobacterium angustum (strain S14 / CCUG
15956) GN=relA PE=3 SV=1
Length = 744
Score = 100 bits (248), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 113/219 (51%), Gaps = 4/219 (1%)
Query: 251 SGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGV 310
+G L E +L + ++ + A LL+ ++ S D + + + LV+GV
Sbjct: 50 NGPLLLWRGRELVEILVTLSMDADTLIAALLYPLVEGGCYSTDALKEEYSGTILHLVQGV 109
Query: 311 SKLSQLSKLARENNTASKTVEADRLHTMFLAMADA-RAVLIKLADRLHNMMTLDALPLCK 369
++ +S+L ++ + D + M L+M D R V+IKLA+R+ N+ + P
Sbjct: 110 EQMCAISQLKSTAEETAQAAQVDNIRRMLLSMVDDFRCVVIKLAERICNLREVKDQPDEV 169
Query: 370 RQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVE--CFDEAMVT 427
R+ A+E I+ PLANRLGI K ++E+ F++ +PD + +++ +L E E +T
Sbjct: 170 RRAAAQECANIYAPLANRLGIGQLKWEIEDYAFRYQHPDTYKQIAKQLSERRIDREDYIT 229
Query: 428 SAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKYAL 466
++ L A+K NI V GR K +YSI KM K +L
Sbjct: 230 HFVDDLSDAMKASNIRAEVQ-GRPKHIYSIWRKMQKKSL 267
>sp|P0AG23|RELA_SHIFL GTP pyrophosphokinase OS=Shigella flexneri GN=relA PE=3 SV=1
Length = 744
Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 108/214 (50%), Gaps = 4/214 (1%)
Query: 256 LLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQ 315
L VE +L+ + + + A LL D +S D + + G V +L+ GV ++
Sbjct: 56 LWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAA 115
Query: 316 LSKLARENNTASKTVEADRLHTMFLAMADA-RAVLIKLADRLHNMMTLDALPLCKRQRFA 374
+ +L + + + + D + M LAM D R V+IKLA+R+ ++ + P +R A
Sbjct: 116 IRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAA 175
Query: 375 KETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVE--CFDEAMVTSAIEK 432
KE I+ PLANRLGI K +LE+ CF++L+P ++ ++ L E E + +
Sbjct: 176 KECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGH 235
Query: 433 LEQALKDKNISFLVLCGRHKSLYSIHCKMLKYAL 466
L +K + + V GR K +YSI KM K L
Sbjct: 236 LRAEMKAEGVKAEVY-GRPKHIYSIWRKMQKKNL 268
>sp|P0AG20|RELA_ECOLI GTP pyrophosphokinase OS=Escherichia coli (strain K12) GN=relA PE=1
SV=1
Length = 744
Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 108/214 (50%), Gaps = 4/214 (1%)
Query: 256 LLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQ 315
L VE +L+ + + + A LL D +S D + + G V +L+ GV ++
Sbjct: 56 LWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAA 115
Query: 316 LSKLARENNTASKTVEADRLHTMFLAMADA-RAVLIKLADRLHNMMTLDALPLCKRQRFA 374
+ +L + + + + D + M LAM D R V+IKLA+R+ ++ + P +R A
Sbjct: 116 IRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAA 175
Query: 375 KETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVE--CFDEAMVTSAIEK 432
KE I+ PLANRLGI K +LE+ CF++L+P ++ ++ L E E + +
Sbjct: 176 KECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGH 235
Query: 433 LEQALKDKNISFLVLCGRHKSLYSIHCKMLKYAL 466
L +K + + V GR K +YSI KM K L
Sbjct: 236 LRAEMKAEGVKAEVY-GRPKHIYSIWRKMQKKNL 268
>sp|P0AG21|RELA_ECOL6 GTP pyrophosphokinase OS=Escherichia coli O6:H1 (strain CFT073 /
ATCC 700928 / UPEC) GN=relA PE=3 SV=1
Length = 744
Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 108/214 (50%), Gaps = 4/214 (1%)
Query: 256 LLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQ 315
L VE +L+ + + + A LL D +S D + + G V +L+ GV ++
Sbjct: 56 LWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAA 115
Query: 316 LSKLARENNTASKTVEADRLHTMFLAMADA-RAVLIKLADRLHNMMTLDALPLCKRQRFA 374
+ +L + + + + D + M LAM D R V+IKLA+R+ ++ + P +R A
Sbjct: 116 IRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAA 175
Query: 375 KETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVE--CFDEAMVTSAIEK 432
KE I+ PLANRLGI K +LE+ CF++L+P ++ ++ L E E + +
Sbjct: 176 KECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGH 235
Query: 433 LEQALKDKNISFLVLCGRHKSLYSIHCKMLKYAL 466
L +K + + V GR K +YSI KM K L
Sbjct: 236 LRAEMKAEGVKAEVY-GRPKHIYSIWRKMQKKNL 268
>sp|P0AG22|RELA_ECO57 GTP pyrophosphokinase OS=Escherichia coli O157:H7 GN=relA PE=3 SV=1
Length = 744
Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 108/214 (50%), Gaps = 4/214 (1%)
Query: 256 LLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQ 315
L VE +L+ + + + A LL D +S D + + G V +L+ GV ++
Sbjct: 56 LWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAA 115
Query: 316 LSKLARENNTASKTVEADRLHTMFLAMADA-RAVLIKLADRLHNMMTLDALPLCKRQRFA 374
+ +L + + + + D + M LAM D R V+IKLA+R+ ++ + P +R A
Sbjct: 116 IRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAA 175
Query: 375 KETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVE--CFDEAMVTSAIEK 432
KE I+ PLANRLGI K +LE+ CF++L+P ++ ++ L E E + +
Sbjct: 176 KECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGH 235
Query: 433 LEQALKDKNISFLVLCGRHKSLYSIHCKMLKYAL 466
L +K + + V GR K +YSI KM K L
Sbjct: 236 LRAEMKAEGVKAEVY-GRPKHIYSIWRKMQKKNL 268
>sp|P44644|RELA_HAEIN GTP pyrophosphokinase OS=Haemophilus influenzae (strain ATCC 51907
/ DSM 11121 / KW20 / Rd) GN=relA PE=3 SV=1
Length = 743
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 109/213 (51%), Gaps = 11/213 (5%)
Query: 260 VETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKL 319
VE +L + ++ + +L + + ++ + FGA + L++GV ++ + +L
Sbjct: 63 VEMVEILHELNMDAETLLTAMLFPIVANKLTDWESLKEKFGAKITKLLKGVLEMDNIRQL 122
Query: 320 ARENNTASKTVEADRLHTMFLAMADA-RAVLIKLADRLHNMMTLDALPLCKRQR---FAK 375
+ ++ ++ D + M LAM D R V+IKLA+R+ DA C + K
Sbjct: 123 NASH--SANALQVDNVRRMLLAMVDDFRCVIIKLAERI--TFLRDAEHRCAEEDKVLAVK 178
Query: 376 ETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVE--CFDEAMVTSAIEKL 433
E I+ PLANRLGI K +LE+ CF++L+P+Q+ ++ L E E + + +L
Sbjct: 179 ECSYIYAPLANRLGIGQLKWELEDYCFRYLHPEQYRAIAKLLQERRLDREHYIADFVSEL 238
Query: 434 EQALKDKNISFLVLCGRHKSLYSIHCKMLKYAL 466
L++ NI + + GR K +YSI KM K L
Sbjct: 239 SGYLRE-NIEQVEVYGRPKHIYSIWRKMQKKHL 270
>sp|Q568P1|MESH1_DANRE Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1
OS=Danio rerio GN=hddc3 PE=2 SV=1
Length = 180
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 15/128 (11%)
Query: 240 AERAHRGQMRA--SGDPYLLHCVETAMLLAAIG--ANSTVVAAGLLHDTLDDAFLSYDYI 295
A HR Q G PY+ H + A +L+ G + V+ A LLHDT++D +++ +
Sbjct: 16 AAEKHRNQRHKDPEGTPYINHPIGVARILSHEGEITDVEVIQAALLHDTVEDTDTTFEEL 75
Query: 296 FRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADR 355
FGA VA +V+GV+ L K RE R +A L+KLAD+
Sbjct: 76 ESVFGATVARIVQGVTDDKSLPKAERE-----------RQQVEHAPHCSHQAKLVKLADK 124
Query: 356 LHNMMTLD 363
L+N+ L+
Sbjct: 125 LYNLRDLN 132
>sp|Q8N4P3|MESH1_HUMAN Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1
OS=Homo sapiens GN=HDDC3 PE=1 SV=3
Length = 179
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 82/173 (47%), Gaps = 23/173 (13%)
Query: 240 AERAHRGQMRA--SGDPYLLHCVETAMLL---AAIGANSTVVAAGLLHDTLDDAFLSYDY 294
A R HR Q R G PY+ H + A +L A I + V+ A LLHDT++D + D
Sbjct: 15 AARKHRQQRRKDPEGTPYINHPIGVARILTHEAGI-TDIVVLQAALLHDTVEDTDTTLDE 73
Query: 295 IFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLAD 354
+ FGA V LVE V+ L KL R+ RL + A L+KLAD
Sbjct: 74 VELHFGAQVRRLVEEVTDDKTLPKLERK-----------RLQVEQAPHSSPGAKLVKLAD 122
Query: 355 RLHNMMTLDALPLCKRQRFAKETLEIFVPLANRL--GISTWKVQLENLCFKHL 405
+L+N+ L+ C + +++ ++ + A ++ G+ QLE KHL
Sbjct: 123 KLYNLRDLNR---CTPEGWSEHRVQEYFEWAAQVVKGLQGTNRQLEE-ALKHL 171
>sp|P29941|YCB8_PSEDE Uncharacterized 19.2 kDa protein in cobO 3'region OS=Pseudomonas
denitrificans PE=4 SV=1
Length = 175
Score = 59.7 bits (143), Expect = 5e-08, Method: Composition-based stats.
Identities = 47/135 (34%), Positives = 66/135 (48%), Gaps = 9/135 (6%)
Query: 231 DFVIKAFYEAERAHRGQMRA-SGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAF 289
D A A RAH Q R G PY++H + A ++ ++ ++AA LLHDT++D
Sbjct: 12 DLENSALQFATRAHGEQKRKYDGRPYIVHPIAVAEIVRSVPHTPEMIAAALLHDTVEDTD 71
Query: 290 LSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVL 349
+ I FG VA L V+ L+ +S N K E DR H LA A A A
Sbjct: 72 ATLLEIKEAFGPKVATL---VAWLTDISTPFHGNRQVRK--ELDRQH---LASAPAAAKT 123
Query: 350 IKLADRLHNMMTLDA 364
+KLAD + N + + A
Sbjct: 124 VKLADLIDNAIAIKA 138
>sp|Q28C98|MESH1_XENTR Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1
OS=Xenopus tropicalis GN=hddc3 PE=2 SV=1
Length = 179
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 15/135 (11%)
Query: 232 FVIKAFYEAERAHRGQMRASGD--PYLLHCVETAMLLAAIGA--NSTVVAAGLLHDTLDD 287
+++A A H+ Q R + PY+ H + A +L+ G ++ V+ A LLHDT++D
Sbjct: 7 LILEAANFAAEKHKQQRRKDPEKTPYINHPLGVARILSHEGGITDTAVLQAALLHDTVED 66
Query: 288 AFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARA 347
+++ I FG V ++VE V+ L K+ R+ RL +A
Sbjct: 67 TNTTFEEIELHFGQDVRNIVEEVTDDKTLPKMERK-----------RLQMEHAPHCSQKA 115
Query: 348 VLIKLADRLHNMMTL 362
L+KLAD+L+N+ L
Sbjct: 116 KLVKLADKLYNLRDL 130
>sp|Q9D114|MESH1_MOUSE Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1
OS=Mus musculus GN=Hddc3 PE=2 SV=1
Length = 179
Score = 55.8 bits (133), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 60/125 (48%), Gaps = 17/125 (13%)
Query: 244 HRGQMR--ASGDPYLLHCVETAMLL---AAIGANSTVVAAGLLHDTLDDAFLSYDYIFRT 298
HR Q R G PY+ H + A +L A I + V+ A LLHDT++D + D +
Sbjct: 19 HRQQRRKDPEGTPYINHPIGVARILTHEAGI-TDIVVLQAALLHDTVEDTDTTLDEVELH 77
Query: 299 FGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHN 358
FGA V LVE V+ L KL R+ + + A L+KLAD+L+N
Sbjct: 78 FGAQVRRLVEEVTDDKTLPKLERKRQQVEQA-----------PHSSPGAKLVKLADKLYN 126
Query: 359 MMTLD 363
+ L+
Sbjct: 127 LRDLN 131
>sp|Q9VAM9|MESH1_DROME Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1
OS=Drosophila melanogaster GN=Mesh1 PE=1 SV=1
Length = 179
Score = 55.8 bits (133), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 58/123 (47%), Gaps = 15/123 (12%)
Query: 244 HRGQMRASGD--PYLLHCVETAMLLA--AIGANSTVVAAGLLHDTLDDAFLSYDYIFRTF 299
HR Q R PY+ H + + +L+ A + V+ A LLHD ++D S++ + + F
Sbjct: 20 HRQQRRKDPQETPYVNHVINVSTILSVEACITDEGVLMAALLHDVVEDTDASFEDVEKLF 79
Query: 300 GAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNM 359
G V LV V+ L K R+ RL A + RA LIKLAD+L N+
Sbjct: 80 GPDVCGLVREVTDDKSLEKQERK-----------RLQIENAAKSSCRAKLIKLADKLDNL 128
Query: 360 MTL 362
L
Sbjct: 129 RDL 131
>sp|P03303|POLG_HRV14 Genome polyprotein OS=Human rhinovirus 14 PE=1 SV=3
Length = 2179
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 88/223 (39%), Gaps = 25/223 (11%)
Query: 238 YEAERAHRGQMRASG--DPY----LLHCVETAMLLAAIGANSTVVAAGL--LHDTLDDAF 289
Y R G M+ G +P +L C+ + L G + V A + L ++
Sbjct: 944 YYPSRFQAGVMKGVGPAEPGDCGGILRCIHGPIGLLTAGGSGYVCFADIRQLECIAEEQG 1003
Query: 290 LSYDYIF---RTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADAR 346
LS DYI R FG G D + +K+++L ++A++ T ++ + + M A
Sbjct: 1004 LS-DYITGLGRAFGVGFTDQIS--TKVTELQEVAKDFLTT-------KVLSKVVKMVSAL 1053
Query: 347 AVLIKLADRLHNMMTLDALPLCK--RQRFAKETL--EIFVPLANRLGISTWKVQLENLCF 402
++ + D L + AL C RF K + VP R W + + C
Sbjct: 1054 VIICRNHDDLVTVTATLALLGCDGSPWRFLKMYISKHFQVPYIERQANDGWFRKFNDACN 1113
Query: 403 KHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFL 445
+ SKL+E ++ A EKLE K K + L
Sbjct: 1114 AAKGLEWIANKISKLIEWIKNKVLPQAKEKLEFCSKLKQLDIL 1156
>sp|Q7A638|FLIPR_STAAN FPRL1 inhibitory protein OS=Staphylococcus aureus (strain N315)
GN=flr PE=3 SV=1
Length = 133
Score = 33.1 bits (74), Expect = 6.1, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 273 STVVAAGLLHDTLD-DAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVE 331
STV+AAGLL T D AF SY++ +AD + ++ KL +E++ +
Sbjct: 12 STVIAAGLLTQTNDAKAFFSYEWKGLEIAKNLAD--QAKKDDERIDKLMKESDKNLTPYK 69
Query: 332 ADRLHTMF-----LAMADARAVLIKLAD 354
A+ ++ ++ L+ D + ++++ D
Sbjct: 70 AETVNDLYLIVKKLSQGDVKKAVVRIKD 97
>sp|Q99UV1|FLIPR_STAAM FPRL1 inhibitory protein OS=Staphylococcus aureus (strain Mu50 /
ATCC 700699) GN=flr PE=3 SV=1
Length = 133
Score = 33.1 bits (74), Expect = 6.1, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 273 STVVAAGLLHDTLD-DAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVE 331
STV+AAGLL T D AF SY++ +AD + ++ KL +E++ +
Sbjct: 12 STVIAAGLLTQTNDAKAFFSYEWKGLEIAKNLAD--QAKKDDERIDKLMKESDKNLTPYK 69
Query: 332 ADRLHTMF-----LAMADARAVLIKLAD 354
A+ ++ ++ L+ D + ++++ D
Sbjct: 70 AETVNDLYLIVKKLSQGDVKKAVVRIKD 97
>sp|A6QG57|FLIPR_STAAE FPRL1 inhibitory protein OS=Staphylococcus aureus (strain Newman)
GN=flr PE=1 SV=1
Length = 133
Score = 33.1 bits (74), Expect = 6.1, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 273 STVVAAGLLHDTLD-DAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVE 331
STV+AAGLL T D AF SY++ +AD + ++ KL +E++ +
Sbjct: 12 STVIAAGLLTQTNDAKAFFSYEWKGLEIAKNLAD--QAKKDDERIDKLMKESDKNLTPYK 69
Query: 332 ADRLHTMF-----LAMADARAVLIKLAD 354
A+ ++ ++ L+ D + ++++ D
Sbjct: 70 AETVNDLYLIVKKLSQGDVKKAVVRIKD 97
>sp|Q5HGS8|FLIPR_STAAC FPRL1 inhibitory protein OS=Staphylococcus aureus (strain COL)
GN=flr PE=3 SV=1
Length = 133
Score = 33.1 bits (74), Expect = 6.1, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 273 STVVAAGLLHDTLD-DAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVE 331
STV+AAGLL T D AF SY++ +AD + ++ KL +E++ +
Sbjct: 12 STVIAAGLLTQTNDAKAFFSYEWKGLEIAKNLAD--QAKKDDERIDKLMKESDKNLTPYK 69
Query: 332 ADRLHTMF-----LAMADARAVLIKLAD 354
A+ ++ ++ L+ D + ++++ D
Sbjct: 70 AETVNDLYLIVKKLSQGDVKKAVVRIKD 97
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.131 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 183,059,273
Number of Sequences: 539616
Number of extensions: 7197445
Number of successful extensions: 22171
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 20644
Number of HSP's gapped (non-prelim): 685
length of query: 532
length of database: 191,569,459
effective HSP length: 122
effective length of query: 410
effective length of database: 125,736,307
effective search space: 51551885870
effective search space used: 51551885870
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)