Query 009540
Match_columns 532
No_of_seqs 316 out of 1684
Neff 4.6
Searched_HMMs 46136
Date Thu Mar 28 14:21:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009540.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009540hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0317 SpoT Guanosine polypho 100.0 8.2E-87 1.8E-91 732.4 25.7 290 213-519 8-302 (701)
2 PRK10872 relA (p)ppGpp synthet 100.0 2.9E-85 6.2E-90 728.1 29.0 291 215-519 18-313 (743)
3 PRK11092 bifunctional (p)ppGpp 100.0 1.6E-81 3.4E-86 697.7 27.2 290 214-520 4-298 (702)
4 TIGR00691 spoT_relA (p)ppGpp s 100.0 4.9E-76 1.1E-80 653.5 24.6 267 236-519 1-272 (683)
5 KOG1157 Predicted guanosine po 100.0 1.9E-75 4.2E-80 601.8 22.1 341 130-519 6-350 (543)
6 PF13328 HD_4: HD domain; PDB: 100.0 1.8E-41 3.9E-46 312.2 5.9 152 236-391 1-153 (153)
7 cd05399 NT_Rel-Spo_like Nucleo 99.1 5.8E-11 1.2E-15 106.4 6.3 81 428-519 2-90 (129)
8 PF04607 RelA_SpoT: Region fou 98.7 4.7E-09 1E-13 91.9 2.2 63 449-522 1-68 (115)
9 TIGR03276 Phn-HD phosphonate d 98.3 2.6E-06 5.7E-11 82.3 8.3 72 244-315 13-103 (179)
10 COG2357 PpGpp synthetase catal 97.3 0.00034 7.5E-09 70.1 5.4 76 433-520 43-126 (231)
11 smart00471 HDc Metal dependent 95.5 0.025 5.4E-07 47.0 5.1 37 252-288 2-44 (124)
12 PF01966 HD: HD domain; Inter 94.9 0.046 9.9E-07 46.2 5.1 33 256-288 2-41 (122)
13 TIGR03401 cyanamide_fam HD dom 93.7 0.75 1.6E-05 46.3 11.5 128 226-374 34-182 (228)
14 PRK12703 tRNA 2'-O-methylase; 93.1 0.82 1.8E-05 48.7 11.1 147 233-401 172-331 (339)
15 cd00077 HDc Metal dependent ph 93.1 0.17 3.7E-06 42.6 5.0 35 254-288 2-44 (145)
16 TIGR00295 conserved hypothetic 85.5 5.9 0.00013 37.6 9.2 56 253-309 12-86 (164)
17 PRK10119 putative hydrolase; P 84.8 9.2 0.0002 38.8 10.7 52 232-286 6-62 (231)
18 COG1418 Predicted HD superfami 82.3 2.3 5E-05 42.6 5.3 52 251-302 33-97 (222)
19 COG4341 Predicted HD phosphohy 79.9 2 4.3E-05 41.9 3.6 35 250-284 24-60 (186)
20 PRK03826 5'-nucleotidase; Prov 75.1 16 0.00034 36.1 8.5 35 253-287 27-72 (195)
21 TIGR00277 HDIG uncharacterized 68.8 8.4 0.00018 30.4 4.2 34 253-286 3-41 (80)
22 PF13023 HD_3: HD domain; PDB: 66.7 15 0.00033 34.9 6.2 95 253-360 21-129 (165)
23 PF09371 Tex_N: Tex-like prote 65.8 87 0.0019 31.0 11.4 47 362-408 71-140 (193)
24 PRK00106 hypothetical protein; 63.2 22 0.00047 40.4 7.5 37 251-287 347-388 (535)
25 COG1896 Predicted hydrolases o 61.0 27 0.00059 34.4 6.9 98 251-359 30-141 (193)
26 PRK12704 phosphodiesterase; Pr 60.2 24 0.00053 39.8 7.2 36 251-286 332-372 (520)
27 PF12917 HD_2: HD containing h 58.2 19 0.0004 36.5 5.2 98 253-360 28-143 (215)
28 PRK12705 hypothetical protein; 57.1 41 0.00089 38.0 8.2 36 251-286 320-360 (508)
29 COG1713 Predicted HD superfami 57.0 14 0.00031 36.5 4.2 37 253-289 16-57 (187)
30 COG1078 HD superfamily phospho 55.8 6.9 0.00015 43.0 2.0 31 254-284 51-95 (421)
31 TIGR00488 putative HD superfam 55.4 14 0.0003 34.5 3.7 34 253-286 7-45 (158)
32 TIGR03319 YmdA_YtgF conserved 54.0 42 0.00092 37.8 7.8 35 252-286 327-366 (514)
33 PRK13480 3'-5' exoribonuclease 48.4 58 0.0013 34.5 7.3 32 254-285 159-196 (314)
34 PRK01286 deoxyguanosinetriphos 47.4 30 0.00066 37.0 5.1 31 254-284 62-97 (336)
35 COG0466 Lon ATP-dependent Lon 46.5 3.7E+02 0.0081 32.1 13.7 114 333-467 152-265 (782)
36 PRK03007 deoxyguanosinetriphos 46.4 35 0.00076 37.7 5.5 57 229-285 40-106 (428)
37 PF05153 DUF706: Family of unk 46.3 35 0.00076 35.3 5.1 53 232-284 40-93 (253)
38 KOG1573 Aldehyde reductase [Ge 44.6 98 0.0021 30.6 7.5 52 233-284 75-127 (204)
39 PRK00117 recX recombination re 43.2 60 0.0013 30.1 5.9 76 397-474 13-100 (157)
40 PRK14137 recX recombination re 42.3 40 0.00087 33.4 4.7 79 392-474 37-126 (195)
41 TIGR01353 dGTP_triPase deoxygu 41.4 37 0.0008 36.8 4.7 57 229-285 8-85 (381)
42 KOG3220 Similar to bacterial d 40.2 84 0.0018 32.1 6.6 38 262-303 17-57 (225)
43 cd08318 Death_NMPP84 Death dom 39.9 1.7E+02 0.0038 24.9 7.7 73 366-443 6-79 (86)
44 COG1578 Uncharacterized conser 38.9 2.1E+02 0.0045 30.3 9.3 110 354-467 13-138 (285)
45 PRK07152 nadD putative nicotin 38.9 33 0.00071 36.2 3.8 35 253-287 195-234 (342)
46 COG2316 Predicted hydrolase (H 37.2 59 0.0013 32.2 4.9 63 252-314 45-122 (212)
47 PRK05910 type III secretion sy 37.2 41 0.00089 38.7 4.4 69 333-401 431-502 (584)
48 COG0232 Dgt dGTP triphosphohyd 35.7 54 0.0012 36.2 4.9 57 229-285 38-109 (412)
49 TIGR01399 hrcV type III secret 35.3 1.5E+02 0.0031 35.0 8.4 127 263-401 455-593 (677)
50 PF06160 EzrA: Septation ring 33.7 4.1E+02 0.0089 30.3 11.6 142 260-408 190-340 (560)
51 PRK15337 type III secretion sy 31.8 1.8E+02 0.004 34.3 8.5 126 263-401 465-602 (686)
52 KOG2905 Transcription initiati 31.3 52 0.0011 34.0 3.6 41 394-434 184-225 (254)
53 PRK05318 deoxyguanosinetriphos 31.1 56 0.0012 36.1 4.1 57 229-285 28-105 (432)
54 COG2137 OraA Uncharacterized p 29.9 1.3E+02 0.0028 29.4 6.0 102 395-508 20-131 (174)
55 TIGR01398 FlhA flagellar biosy 29.5 81 0.0018 37.0 5.2 118 272-401 467-594 (678)
56 PRK12720 secretion system appa 29.5 2E+02 0.0044 33.8 8.3 126 264-401 452-589 (675)
57 COG0751 GlyS Glycyl-tRNA synth 29.2 1E+03 0.023 28.3 14.1 107 345-462 448-566 (691)
58 cd08780 Death_TRADD Death Doma 29.0 3.6E+02 0.0077 24.1 7.8 75 367-443 2-81 (90)
59 PF04753 Corona_NS2: Coronavir 27.1 33 0.0007 30.9 1.2 11 395-405 20-30 (109)
60 PRK12792 flhA flagellar biosyn 27.0 1.7E+02 0.0036 34.6 7.1 119 271-402 480-608 (694)
61 PRK14136 recX recombination re 26.9 1.2E+02 0.0026 32.4 5.5 71 400-474 167-250 (309)
62 KOG1087 Cytosolic sorting prot 26.4 4.4E+02 0.0095 29.8 10.0 72 397-468 61-138 (470)
63 cd08313 Death_TNFR1 Death doma 25.7 1.5E+02 0.0032 25.5 4.9 57 383-443 16-73 (80)
64 PF08336 P4Ha_N: Prolyl 4-Hydr 24.1 1.6E+02 0.0035 26.9 5.2 44 232-276 33-76 (134)
65 PRK10280 dipeptidyl carboxypep 24.0 4.8E+02 0.01 30.7 10.1 118 288-420 21-143 (681)
66 PF09177 Syntaxin-6_N: Syntaxi 23.7 2.2E+02 0.0049 24.6 5.8 43 390-435 48-95 (97)
67 KOG2874 rRNA processing protei 23.2 88 0.0019 33.2 3.6 60 397-468 54-128 (356)
68 COG2733 Predicted membrane pro 22.0 6.2E+02 0.013 28.2 9.8 78 366-443 120-202 (415)
69 PF01121 CoaE: Dephospho-CoA k 21.7 54 0.0012 31.7 1.7 38 262-303 16-56 (180)
70 cd03569 VHS_Hrs_Vps27p VHS dom 21.4 3.9E+02 0.0084 25.0 7.2 40 428-468 100-139 (142)
71 PRK07764 DNA polymerase III su 21.3 1.1E+03 0.023 28.7 12.4 21 287-307 231-251 (824)
72 PF06744 DUF1215: Protein of u 21.2 97 0.0021 28.0 3.1 51 146-197 69-119 (125)
73 COG4339 Uncharacterized protei 21.0 3.1E+02 0.0067 27.4 6.6 35 258-292 47-82 (208)
74 PF09824 ArsR: ArsR transcript 21.0 1.2E+02 0.0026 29.5 3.8 55 259-317 4-58 (160)
75 KOG0260 RNA polymerase II, lar 20.9 5E+02 0.011 32.9 9.5 8 126-133 1571-1578(1605)
76 TIGR00763 lon ATP-dependent pr 20.9 4.4E+02 0.0095 31.2 9.2 102 350-467 160-262 (775)
77 PRK06645 DNA polymerase III su 20.2 6.4E+02 0.014 28.6 9.9 93 287-393 241-337 (507)
No 1
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=100.00 E-value=8.2e-87 Score=732.42 Aligned_cols=290 Identities=39% Similarity=0.565 Sum_probs=274.1
Q ss_pred HHHHHHHHHHhhCChhhHHHHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHHhCCCHHHHHHHHhhcccccccCCH
Q 009540 213 YAKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSY 292 (532)
Q Consensus 213 ~~~~Ll~~~~~~~~~~d~~ll~kA~~fA~~aH~GQ~RkSGePYI~HpleVA~ILa~Lg~D~etIaAALLHDvVEDT~vTl 292 (532)
...++++.+..+.+..+.. +.+|+.||.++|.+|+|++|+|||.||++||.||+++++|.++++||||||++|||++|.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~-l~kA~~~A~q~H~~q~r~SGePYi~Hpl~Va~iLael~~d~~tl~AaLLHD~vEDt~~t~ 86 (701)
T COG0317 8 ELEELLDSLATYLPPVDIE-LKKAWYYARQAHGGQTRKSGEPYISHPLEVAEILAELHMDMETLAAALLHDTIEDTPVTE 86 (701)
T ss_pred cHHHHHHHHHhcCChHHHH-HHHHHHHHHHHhHhhcCcCCCchhhCHHHHHHHHHHccCCHHHHHHHHccchHhcCCCCH
Confidence 4557788888888766666 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcHHHHHHHHHhhcccccchHHhhccccchHHHHHHHHHHHhhcc-CchhhHhHHhhhHhhccccCCCCHHHHH
Q 009540 293 DYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQ 371 (532)
Q Consensus 293 EeIee~FG~eVA~LVegVTKls~l~~~~r~~~~~~~~~qAE~lRKMLLAma-DiRVVLIKLADRLhNMRtL~~lp~ekq~ 371 (532)
|+|++.||++|++||+||||+.++..+.. ....|+|++|||||||+ |+||++||||||||||||+..++++||+
T Consensus 87 e~i~~~FG~eVa~LV~GvTkl~~i~~~~~-----~~~~qaen~rkmllAm~~DiRvilIKLADRLhNmrtl~~~~~ek~~ 161 (701)
T COG0317 87 ELIEEIFGKEVAKLVEGVTKLKKIGQLSS-----EEELQAENLRKMLLAMVKDIRVVLIKLADRLHNLRTLKNLDEEKRR 161 (701)
T ss_pred HHHHHHHCHHHHHHHhhHHHhhhhhccCc-----cchhHHHHHHHHHHHhccCccEEEeehhhhhhhcccCccCCHHHHH
Confidence 99999999999999999999999842211 23458999999999997 9999999999999999999998899999
Q ss_pred HHHHHhhhHHHHHHhhhChHHHHHHHHHHHHhhcChhhHHHHHHHHHHHH--hHHhHHHHHHHHHHHHHhcCcccccccc
Q 009540 372 RFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECF--DEAMVTSAIEKLEQALKDKNISFLVLCG 449 (532)
Q Consensus 372 riA~ETl~IYAPLA~RLGI~~iK~ELEDLsFkyL~Pe~Y~~I~~~L~e~~--re~~I~~vi~~L~~~L~~~gI~~~~V~G 449 (532)
++|+||++|||||||||||+++|||||||||+||+|++|+.|+++|++++ |+++|++++.+|++.|+++||+++ |+|
T Consensus 162 riakETl~IyAPLA~RLGi~~iK~ELEDlsFr~l~P~~Y~~I~~~l~e~r~~re~~i~~~~~~l~~~L~~~gi~a~-v~g 240 (701)
T COG0317 162 RIARETLDIYAPLAHRLGIGQIKWELEDLSFRYLHPDQYKRIAKLLDEKRLEREQYIENVVSELREELKAAGIKAE-VSG 240 (701)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEE-EEc
Confidence 99999999999999999999999999999999999999999999999986 899999999999999999999996 999
Q ss_pred cccchHHHHHHHHhcCCCC--ccccccceEEecCCcchhhhhhhhhhhhhhhhhhccCccccCCcceeceec
Q 009540 450 RHKSLYSIHCKMLKYALPS--LPNLIRESFVTEYSSLSHACFQKFQLLTIHGIGHILWKILCLHYLSVNIQL 519 (532)
Q Consensus 450 R~KhiYSIy~KM~kK~l~f--i~Dlia~Riiv~~~~~~~~CY~a~~~~tvLGiVH~lWkPI~~~~f~dyIa~ 519 (532)
|+|||||||+||++|++.| |+||+||||||+ ++.+||++ ||+||++|+|+ ||+||||||+
T Consensus 241 R~KhiYSIyrKM~~k~~~f~~I~Dl~avRiIv~---~~~dCY~~------LGiVH~~~kp~-PgrFKDYIA~ 302 (701)
T COG0317 241 RPKHIYSIYRKMQKKKLSFDEIYDVRAVRIIVD---TIPDCYTA------LGIVHTLWKPI-PGEFDDYIAN 302 (701)
T ss_pred CCCcccHHHHHHHHcccChhhhhhheeEEEEEC---ChHHHHHH------HHHHHhcCcCC-CCcccccccc
Confidence 9999999999999999999 999999999997 57999998 99999999999 9999999997
No 2
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=100.00 E-value=2.9e-85 Score=728.09 Aligned_cols=291 Identities=26% Similarity=0.403 Sum_probs=271.0
Q ss_pred HHHHHHHHhhCChhhHHHHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHHhCCCHHHHHHHHhhcccccccCCHHH
Q 009540 215 KEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDY 294 (532)
Q Consensus 215 ~~Ll~~~~~~~~~~d~~ll~kA~~fA~~aH~GQ~RkSGePYI~HpleVA~ILa~Lg~D~etIaAALLHDvVEDT~vTlEe 294 (532)
++|+..+..++ ..|.+.|++|+.||.++|.| |++|+|||.||++||.||++++||.++|+||||||++|||.+|.|+
T Consensus 18 ~~l~~~~~~~~-~~~~~~i~~A~~~a~~~H~g--r~sGepyi~Hpl~vA~iLa~~~~D~~ti~AaLLHD~vedt~~t~e~ 94 (743)
T PRK10872 18 DKWIASLGITS-QQSCERLAETWAYCLQQTQG--HPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDV 94 (743)
T ss_pred HHHHHHHHhhh-HHHHHHHHHHHHHHHHhccC--CCCCChhhhhHHHHHHHHHHcCCCHHHHHHHHhhhhHhcCCCCHHH
Confidence 46677777677 78899999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHhcHHHHHHHHHhhcccccchHHhhccccchHHHHHHHHHHHhhcc-CchhhHhHHhhhHhhccccCCCCHHHHHHH
Q 009540 295 IFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQRF 373 (532)
Q Consensus 295 Iee~FG~eVA~LVegVTKls~l~~~~r~~~~~~~~~qAE~lRKMLLAma-DiRVVLIKLADRLhNMRtL~~lp~ekq~ri 373 (532)
|++.||++||.||+||||++++....+.........|+|+||||||||+ |+||+||||||||||||||..++++||+++
T Consensus 95 i~~~FG~~Va~lVdgvtKl~~i~~~~~~~~~~~~~~qae~~RKmllam~~DiRVilIKLADRLhnmrTl~~~~~~kq~~i 174 (743)
T PRK10872 95 LRESVGKSIVNLIHGVRDMDAIRQLKATHNDSVSSEQVDNVRRMLLAMVEDFRCVVIKLAERIAHLREVKDAPEDERVLA 174 (743)
T ss_pred HHHHHCHHHHHHHHHHHHHHHhhhhhcccccchhHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhhcCChHHHHHH
Confidence 9999999999999999999998642211000123458999999999997 999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHhhhChHHHHHHHHHHHHhhcChhhHHHHHHHHHHHH--hHHhHHHHHHHHHHHHHhcCcccccccccc
Q 009540 374 AKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECF--DEAMVTSAIEKLEQALKDKNISFLVLCGRH 451 (532)
Q Consensus 374 A~ETl~IYAPLA~RLGI~~iK~ELEDLsFkyL~Pe~Y~~I~~~L~e~~--re~~I~~vi~~L~~~L~~~gI~~~~V~GR~ 451 (532)
|+||++|||||||||||++||||||||||+||+|+.|+.|+++|.+++ |+.+|+++++.|++.|++.||+++ |+||+
T Consensus 175 A~ETl~IyAPlA~RLGi~~iK~ELEDL~f~~l~P~~Y~~i~~~l~~~~~~r~~~i~~~~~~l~~~L~~~~i~~~-v~gR~ 253 (743)
T PRK10872 175 AKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPDEYKRIAKLLHERRIDREHYIEEFVGHLRAEMKAEGVKAE-VYGRP 253 (743)
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceE-EEeec
Confidence 999999999999999999999999999999999999999999998875 799999999999999999999996 99999
Q ss_pred cchHHHHHHHHhcCCCC--ccccccceEEecCCcchhhhhhhhhhhhhhhhhhccCccccCCcceeceec
Q 009540 452 KSLYSIHCKMLKYALPS--LPNLIRESFVTEYSSLSHACFQKFQLLTIHGIGHILWKILCLHYLSVNIQL 519 (532)
Q Consensus 452 KhiYSIy~KM~kK~l~f--i~Dlia~Riiv~~~~~~~~CY~a~~~~tvLGiVH~lWkPI~~~~f~dyIa~ 519 (532)
||+||||+||++|+++| |+|++|+||||+ .+.+||++ ||+||++|+|| |++||||||.
T Consensus 254 K~~ySI~~Km~~k~~~~~~i~Di~a~RIIv~---~~~dCY~v------Lg~ih~~~~pi-p~~fkDYIa~ 313 (743)
T PRK10872 254 KHIYSIWRKMQKKSLAFDELFDVRAVRIVAE---RLQDCYAA------LGIVHTHYRHL-PDEFDDYVAN 313 (743)
T ss_pred CCHHHHHHHHHHcCCCHHHhccceeEEEEEC---CHHHHHHH------HHHHHhhccCC-cchhhhcccC
Confidence 99999999999999998 999999999997 57999998 99999999999 9999999996
No 3
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=100.00 E-value=1.6e-81 Score=697.73 Aligned_cols=290 Identities=35% Similarity=0.498 Sum_probs=275.5
Q ss_pred HHHHHHHHHhhCChhhHHHHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHHhCCCHHHHHHHHhhcccccccCCHH
Q 009540 214 AKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYD 293 (532)
Q Consensus 214 ~~~Ll~~~~~~~~~~d~~ll~kA~~fA~~aH~GQ~RkSGePYI~HpleVA~ILa~Lg~D~etIaAALLHDvVEDT~vTlE 293 (532)
+++|+..+..+++..+.+++++|+.||.++|.||+|++|+||+.||++||.||+++++|.++++||||||++|||.+|.|
T Consensus 4 ~~~l~~~~~~~~~~~~~~~l~~A~~~A~~aH~gQ~rksGePYi~Hpl~VA~iLa~l~~D~~ti~AaLLHDvvEDt~~t~e 83 (702)
T PRK11092 4 FESLNQLIQTYLPEDQIKRLRQAYLVARDAHEGQTRSSGEPYITHPVAVACILAEMRLDYETLMAALLHDVIEDTPATYQ 83 (702)
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHhccCCcCCCCCcHHHHHHHHHHHHHHcCCCHHHHHHhcccchhhhCCCCHH
Confidence 45777788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcHHHHHHHHHhhcccccchHHhhccccchHHHHHHHHHHHhhcc-CchhhHhHHhhhHhhccccCCCCHHHHHH
Q 009540 294 YIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQR 372 (532)
Q Consensus 294 eIee~FG~eVA~LVegVTKls~l~~~~r~~~~~~~~~qAE~lRKMLLAma-DiRVVLIKLADRLhNMRtL~~lp~ekq~r 372 (532)
+|++.||++|+.||+||||+.+++... .+..|+|++||||+||+ |+||++|||||||||||+|..+++++|++
T Consensus 84 ~i~~~FG~~Va~lV~gvTk~~~l~~~~------~~~~q~e~~rkmllam~~DiRVvlIKLADRlhNmrtL~~~~~ek~~~ 157 (702)
T PRK11092 84 DMEQLFGKSVAELVEGVSKLDKLKFRD------KKEAQAENFRKMIMAMVQDIRVILIKLADRTHNMRTLGSLRPDKRRR 157 (702)
T ss_pred HHHHHHCHHHHHHHHHHHhhccccccc------hhhHHHHHHHHHHHHhcCCCceEEEEHHHHHhhHHHHHhcCccHHHH
Confidence 999999999999999999998876421 13458999999999997 99999999999999999999999999999
Q ss_pred HHHHhhhHHHHHHhhhChHHHHHHHHHHHHhhcChhhHHHHHHHHHHHH--hHHhHHHHHHHHHHHHHhcCccccccccc
Q 009540 373 FAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECF--DEAMVTSAIEKLEQALKDKNISFLVLCGR 450 (532)
Q Consensus 373 iA~ETl~IYAPLA~RLGI~~iK~ELEDLsFkyL~Pe~Y~~I~~~L~e~~--re~~I~~vi~~L~~~L~~~gI~~~~V~GR 450 (532)
+|+||++|||||||||||++||||||||||+||+|++|+.|+++|.+++ |+++|+++++.|++.|+++||+++ |+||
T Consensus 158 iA~ETl~iyaPlA~rlGi~~ik~eLedL~f~~l~P~~y~~i~~~~~~~~~~r~~~i~~~~~~l~~~l~~~~i~~~-i~~R 236 (702)
T PRK11092 158 IARETLEIYSPLAHRLGIHHIKTELEELGFEALYPNRYRVIKEVVKAARGNRKEMIQKILSEIEGRLQEAGIPCR-VSGR 236 (702)
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEE-EEec
Confidence 9999999999999999999999999999999999999999999999875 799999999999999999999996 9999
Q ss_pred ccchHHHHHHHHhcCCCC--ccccccceEEecCCcchhhhhhhhhhhhhhhhhhccCccccCCcceeceecc
Q 009540 451 HKSLYSIHCKMLKYALPS--LPNLIRESFVTEYSSLSHACFQKFQLLTIHGIGHILWKILCLHYLSVNIQLV 520 (532)
Q Consensus 451 ~KhiYSIy~KM~kK~l~f--i~Dlia~Riiv~~~~~~~~CY~a~~~~tvLGiVH~lWkPI~~~~f~dyIa~~ 520 (532)
+||+||||+||++|+++| |+|++|+||||+ .+.+||++ ||+||++|+|| +++|+|||+.-
T Consensus 237 ~K~~ySI~~Km~~k~~~~~~i~Di~a~Riiv~---~~~dCY~~------lg~ih~~~~pi-p~~~kDyIa~P 298 (702)
T PRK11092 237 EKHLYSIYCKMVLKEQRFHSIMDIYAFRVIVD---DSDTCYRV------LGQMHSLYKPR-PGRVKDYIAIP 298 (702)
T ss_pred cCCHHHHHHHHHHcCCChhHhccceeEEEEEC---CHHHHHHH------HHHHHhcCCCC-cCccccccCCC
Confidence 999999999999999998 999999999997 57999998 99999999999 99999999973
No 4
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=100.00 E-value=4.9e-76 Score=653.48 Aligned_cols=267 Identities=40% Similarity=0.604 Sum_probs=255.4
Q ss_pred HHHHHHHHhcCCccccCcchhHHHHHHHHHHHHhCCCHHHHHHHHhhcccccccCCHHHHHHHhcHHHHHHHHHhhcccc
Q 009540 236 AFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQ 315 (532)
Q Consensus 236 A~~fA~~aH~GQ~RkSGePYI~HpleVA~ILa~Lg~D~etIaAALLHDvVEDT~vTlEeIee~FG~eVA~LVegVTKls~ 315 (532)
|+.||.++|.||+|++|+||+.||++||.+|+++++|+++++||||||++|||++|.++|++.||++|+.||++|||+..
T Consensus 1 A~~~A~~aH~gQ~rksg~PYi~Hpl~VA~iL~~~~~D~~~i~AaLLHDvvEDt~~t~e~i~~~FG~~Va~lV~~vTk~~~ 80 (683)
T TIGR00691 1 ALEIAKDLHEGQKRKSGEPYIIHPLAVALILAELGMDEETVCAALLHDVIEDTPVTEEEIEEEFGEEVAELVDGVTKITK 80 (683)
T ss_pred CHHHHHHhcccCcCCCCCcHHHHHHHHHHHHHHhCCCHHHHHHHhccchHhcCCCCHHHHHHHHCHHHHHHHHHHHHhcc
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cchHHhhccccchHHHHHHHHHHHhhcc-CchhhHhHHhhhHhhccccCCCCHHHHHHHHHHhhhHHHHHHhhhChHHHH
Q 009540 316 LSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWK 394 (532)
Q Consensus 316 l~~~~r~~~~~~~~~qAE~lRKMLLAma-DiRVVLIKLADRLhNMRtL~~lp~ekq~riA~ETl~IYAPLA~RLGI~~iK 394 (532)
+.+..+ +..|+|++||||++|+ |+||++|||||||||||+|..+|+++|+++|+||++|||||||||||++||
T Consensus 81 ~~~~~~------~~~q~e~~rkmlla~~~d~rvvlVKLADrlhNmrtl~~~~~~k~~~iA~Et~~iyaPlA~rLG~~~ik 154 (683)
T TIGR00691 81 LKKKSR------QELQAENFRKMILAMAQDIRVIVIKLADRLHNMRTLDFLPPEKQKRIAKETLEIYAPLAHRLGMSSIK 154 (683)
T ss_pred cccchh------hHHHHHHHHHHHHhhcCCcceEeeeHHHHHhHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhChHHHH
Confidence 764222 3458999999999997 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcChhhHHHHHHHHHHHH--hHHhHHHHHHHHHHHHHhcCcccccccccccchHHHHHHHHhcCCCC--cc
Q 009540 395 VQLENLCFKHLNPDQHTELSSKLVECF--DEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKYALPS--LP 470 (532)
Q Consensus 395 ~ELEDLsFkyL~Pe~Y~~I~~~L~e~~--re~~I~~vi~~L~~~L~~~gI~~~~V~GR~KhiYSIy~KM~kK~l~f--i~ 470 (532)
||||||||+||+|++|+.|+++|++++ |+.+|+++++.|++.|.+.||+++ |+||+||+||||+||++|+.+| |+
T Consensus 155 ~eLedl~f~~l~p~~y~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~i~~~-i~~R~K~~~Si~~Km~~k~~~~~~i~ 233 (683)
T TIGR00691 155 TELEDLSFKYLYPKEYENIKSLVNEQKVNRENKLEKFKSELEKRLEDSGIEAE-LEGRSKHLYSIYQKMTRKGQNFDEIH 233 (683)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceE-EEeeeCCHHHHHHHHHhcCCCHHHcc
Confidence 999999999999999999999999875 789999999999999999999996 9999999999999999999998 99
Q ss_pred ccccceEEecCCcchhhhhhhhhhhhhhhhhhccCccccCCcceeceec
Q 009540 471 NLIRESFVTEYSSLSHACFQKFQLLTIHGIGHILWKILCLHYLSVNIQL 519 (532)
Q Consensus 471 Dlia~Riiv~~~~~~~~CY~a~~~~tvLGiVH~lWkPI~~~~f~dyIa~ 519 (532)
|++++|||++ .+.+||++ ||+||.+|+|+ +++|||||++
T Consensus 234 Di~~~RIi~~---~~~dcy~v------lg~ih~~~~p~-~~~~kDyIa~ 272 (683)
T TIGR00691 234 DLLAIRIIVK---SELDCYRV------LGIIHLLFKPI-PGRFKDYIAS 272 (683)
T ss_pred cceeEEEEEC---CHHHHHHH------HHHHHhcCCCC-cccccccccC
Confidence 9999999997 47999998 99999999999 8999999997
No 5
>KOG1157 consensus Predicted guanosine polyphosphate pyrophosphohydrolase/synthase [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-75 Score=601.84 Aligned_cols=341 Identities=55% Similarity=0.807 Sum_probs=318.1
Q ss_pred CCCcccccccccccccccccccCcCcchhhHhhhhhccccccCCCCcccccCCcccccCchhhHHHH-Hhhhcccccccc
Q 009540 130 SPPIRTAREKADVNVNFHTFFKGSSGLFNGFVRNALGSCVDYDSSSFRVHNGDAVLNVGSSAALIDE-LTFNMEDNIVEG 208 (532)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~m~d~~~~~ 208 (532)
||||++.|+|+.. =||||||.|.|+||||+.. +.|.+| +.|+|+ .+
T Consensus 6 ~~pm~i~r~r~~~-------------~~~~~~rKae~~~v~~E~~----------------s~l~~ea~~~~me----ve 52 (543)
T KOG1157|consen 6 SPPMRISRDRNLD-------------GFNGFVRKAEGSCVDYEMD----------------SVLVDEALGFKME----VE 52 (543)
T ss_pred CCCCCCccccchh-------------hhcccCccccccccccccc----------------ccccccccCCcee----ee
Confidence 9999999999862 1999999999999999922 235677 888884 45
Q ss_pred hHHHHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHhcCCccccC-cchhHHHHHHHHHHHHhCCCHHHHHHHHhhccccc
Q 009540 209 NLETYAKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASG-DPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDD 287 (532)
Q Consensus 209 ~~~~~~~~Ll~~~~~~~~~~d~~ll~kA~~fA~~aH~GQ~RkSG-ePYI~HpleVA~ILa~Lg~D~etIaAALLHDvVED 287 (532)
.+.++.+++++..+..++.++.+++.+|+.+|+.+|++|.|+++ +||+.||+.+|.||+.+++|.++++||+|||||||
T Consensus 53 ~~~~~~r~~eR~~~~~~~t~~s~lv~KAl~~Aa~~HR~Q~Rad~~rPY~nH~i~ta~iLAd~~~ds~Vv~AaiLHDVVDD 132 (543)
T KOG1157|consen 53 LVGPYARDLERRAQLWHKTFSSELVIKALYEAAKAHRGQMRADDDRPYLNHCIETAMILADIGADSTVVVAAILHDVVDD 132 (543)
T ss_pred ehhhhhhhhhhhhhhhhhcCcHHHHHHHHHHHHHHHhcccccCCCCchhhhHHHHHHHHHHhhcchHHHHHHHHHHHHhh
Confidence 67789999999999999999999999999999999999999965 59999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHhcHHHHHHHHHhhcccccchHHhhccccchHHHHHHHHHHHhhccCchhhHhHHhhhHhhccccCCCCH
Q 009540 288 AFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPL 367 (532)
Q Consensus 288 T~vTlEeIee~FG~eVA~LVegVTKls~l~~~~r~~~~~~~~~qAE~lRKMLLAmaDiRVVLIKLADRLhNMRtL~~lp~ 367 (532)
|.+++++|++.||.+|++||++||+++.+++..|.+. .|++.++ |++++++.||+||||||+|||||+|..+|+
T Consensus 133 t~~S~eeI~~~FG~gVa~LV~EvtddKnL~K~eRk~l-----~qiet~~-~fyak~s~RAvLIkLADKLdNMRdL~~lpP 206 (543)
T KOG1157|consen 133 TFMSYEEILRHFGTGVADLVEEVTDDKNLSKLERKNL-----TQIETVE-MFYAKASARAVLIKLADKLDNMRDLYALPP 206 (543)
T ss_pred ccCCHHHHHHHhCccHHHHHHHHhcccchhHHHHHHH-----HHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhhhhccCc
Confidence 9999999999999999999999999999998877543 4678877 788999999999999999999999999999
Q ss_pred HHHHHHHHHhhhHHHHHHhhhChHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhcCcccccc
Q 009540 368 CKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVL 447 (532)
Q Consensus 368 ekq~riA~ETl~IYAPLA~RLGI~~iK~ELEDLsFkyL~Pe~Y~~I~~~L~e~~re~~I~~vi~~L~~~L~~~gI~~~~V 447 (532)
-+|+++++||+.|||||||++|++.++.+||||||+||+|..|.++..+|+..++++.|...++.|+++|..+||.++.|
T Consensus 207 vgwq~~r~e~lfIwapla~~~g~gtn~~lle~Ldf~~l~p~~~~~m~s~l~~~~~~~mi~~~~~~l~~~l~~a~i~~~~i 286 (543)
T KOG1157|consen 207 VGWQRFRKETLFIWAPLANRLGIGTNKVLLENLDFKHLFPCQHIEMSSMLEDSFDEAMITSAIEKLEQALKKAGISYHVI 286 (543)
T ss_pred chhHHHHHHHHHHhhHHHHHhcccchHHHHhhhhHHHhCchhHHHHHHHHhcccchHHHHHHHHHHHHHHHhccceeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred cccccchHHHHHHHHhcCCCC--ccccccceEEecCCcchhhhhhhhhhhhhhhhhhccCccccCCcceeceec
Q 009540 448 CGRHKSLYSIHCKMLKYALPS--LPNLIRESFVTEYSSLSHACFQKFQLLTIHGIGHILWKILCLHYLSVNIQL 519 (532)
Q Consensus 448 ~GR~KhiYSIy~KM~kK~l~f--i~Dlia~Riiv~~~~~~~~CY~a~~~~tvLGiVH~lWkPI~~~~f~dyIa~ 519 (532)
+||.|++||||+||.||++.. |+||.++|+|+++ ..+||++ |||||+||+.| ||+.||||+-
T Consensus 287 ~gr~ks~ysi~~kmlk~~~~~dei~di~glr~i~~~---~~~cyk~------~~vv~slw~ev-p~k~kdyia~ 350 (543)
T KOG1157|consen 287 KGRHKSLYSIYKKMLKKKLTPDEIHDIHGLRLIVDN---ESDCYKA------LGVVHSLWSEV-PGKLKDYIAH 350 (543)
T ss_pred ecchhhHHHHHHHHHhcCCCHHHhhhhcceEEEEcC---chHHHHH------HHHHHHHHHhC-cchhhhhhcC
Confidence 999999999999999999854 9999999999974 5799998 99999999999 9999999984
No 6
>PF13328 HD_4: HD domain; PDB: 3NR1_B.
Probab=100.00 E-value=1.8e-41 Score=312.23 Aligned_cols=152 Identities=49% Similarity=0.736 Sum_probs=98.3
Q ss_pred HHHHHHHHhcCCccccCcchhHHHHHHHHHHHHhCCCHHHHHHHHhhcccccccCCHHHHHHHhcHHHHHHHHHhhcccc
Q 009540 236 AFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQ 315 (532)
Q Consensus 236 A~~fA~~aH~GQ~RkSGePYI~HpleVA~ILa~Lg~D~etIaAALLHDvVEDT~vTlEeIee~FG~eVA~LVegVTKls~ 315 (532)
|+.||.++|++|++++|+||+.||++||.+|.++|+|+++++||||||++||+..+ ++|++.||++|+++|.++|++..
T Consensus 1 A~~~A~~~h~~~~~~~g~py~~H~~~va~~l~~~~~d~~~i~aalLHD~ied~~~~-~~i~~~fg~~V~~lV~~lt~~~~ 79 (153)
T PF13328_consen 1 ALAFAAEAHAGQRRKSGEPYISHPLEVAEILAELGLDEETIAAALLHDVIEDTETT-EDIEERFGEDVADLVDALTKIKK 79 (153)
T ss_dssp HHHHHHHHTTT-B-ST--BTTHHHHHHHHHHHTS---HHHHHHHHHTTHHHHSS---HHHHHHHHHHHHHHHHHT---TT
T ss_pred CHHHHHHHHhcccCCCCCcHHHHHHHHHHHHHHcCCCHHHHhhheeecHHHhcCCH-HHHHHccChHHHHHHHHHHhccc
Confidence 78999999999999999999999999999999999999999999999999999656 99999999999999999999998
Q ss_pred cchHHhhccccchHHHHHHHHHHHhhcc-CchhhHhHHhhhHhhccccCCCCHHHHHHHHHHhhhHHHHHHhhhChH
Q 009540 316 LSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGIS 391 (532)
Q Consensus 316 l~~~~r~~~~~~~~~qAE~lRKMLLAma-DiRVVLIKLADRLhNMRtL~~lp~ekq~riA~ETl~IYAPLA~RLGI~ 391 (532)
+...... .....+.+++|+||++|+ |+||++|||||||||||++...++++++++|+||++||+|||||||||
T Consensus 80 ~~~~~~~---~~~~~~~~~~r~ml~~~~~d~~~~lIKlaDrl~nl~~~~~~~~~~~~~~a~Et~~i~apLA~rLGiw 153 (153)
T PF13328_consen 80 LSKKPWE---ERSEEYAERLRRMLLAMSEDVRAVLIKLADRLHNLRTIKYLPPEKQRRYARETLDIYAPLAHRLGIW 153 (153)
T ss_dssp S-HH------HHHHHHHHHGGG-----S-H-HHHHHHHHHHHHHHHHHHH---TT----------------------
T ss_pred cccccch---hhHHHHHHHhhhhccccCCchHHHHHHHHHHHHhhccHHHCCHHHhhhhhhccccccccccccccCC
Confidence 8755111 124568899999999996 999999999999999999999999999999999999999999999998
No 7
>cd05399 NT_Rel-Spo_like Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases. This family includes the catalytic domains of Escherichia coli ppGpp synthetase (RelA), ppGpp synthetase/hydrolase (SpoT), and related proteins. RelA synthesizes (p)ppGpp in response to amino-acid starvation and in association with ribosomes. (p)ppGpp triggers the bacterial stringent response. SpoT catalyzes (p)ppGpp synthesis under carbon limitation in a ribosome-independent manner. It also catalyzes (p)ppGpp degradation. Gram-negative bacteria have two enzymes involved in (p)ppGpp metabolism while most Gram-positive organisms have a single Rel-Spo enzyme (Rel), which both synthesizes and degrades (p)ppGpp. The Arabidopsis thaliana Rel-Spo proteins, At-RSH1,-2, and-3 appear to regulate a rapid (p)ppGpp-mediated response to pathogens and other stresses. This catalytic domain is found in association with an N-terminal HD domain and a C-terminal metal dependent phosphohydro
Probab=99.15 E-value=5.8e-11 Score=106.43 Aligned_cols=81 Identities=25% Similarity=0.344 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHhcCc---ccccccccccchHHHHHHHHhcCCCC-----ccccccceEEecCCcchhhhhhhhhhhhhhh
Q 009540 428 SAIEKLEQALKDKNI---SFLVLCGRHKSLYSIHCKMLKYALPS-----LPNLIRESFVTEYSSLSHACFQKFQLLTIHG 499 (532)
Q Consensus 428 ~vi~~L~~~L~~~gI---~~~~V~GR~KhiYSIy~KM~kK~l~f-----i~Dlia~Riiv~~~~~~~~CY~a~~~~tvLG 499 (532)
.+...|++.|++.++ .+. |.+|+|+++|+++||++|+... |.|++++||++. ...+||.+ ++
T Consensus 2 ~~~~~l~~~L~~~~~~~~~~~-v~~RvK~~~sl~~Kl~~~~~~~~~~~~i~Dl~g~Rii~~---~~~d~~~v------~~ 71 (129)
T cd05399 2 AALEEIADLLRDAGIIGRVAS-VSGRVKSPYSIYEKLRRKGKDLPILDEITDLVGVRVVLL---FVDDCYRV------LD 71 (129)
T ss_pred hHHHHHHHHHHHcCCCCCCcE-EEEecCCHHHHHHHHHhhCCCCCcHHHhhhhheEEEEEe---CHHHHHHH------HH
Confidence 466788999999999 775 9999999999999999987533 899999999997 46899998 99
Q ss_pred hhhccCccccCCcceeceec
Q 009540 500 IGHILWKILCLHYLSVNIQL 519 (532)
Q Consensus 500 iVH~lWkPI~~~~f~dyIa~ 519 (532)
++|..|+++ +++++|||+.
T Consensus 72 ~l~~~f~~~-~~~~~D~~~~ 90 (129)
T cd05399 72 LLHSLFKVI-PGRVKDYIAE 90 (129)
T ss_pred HHHhCCccc-CccccCCcCC
Confidence 999999999 6999999997
No 8
>PF04607 RelA_SpoT: Region found in RelA / SpoT proteins; InterPro: IPR007685 The functions of Escherichia coli RelA and SpoT differ somewhat. RelA (2.7.6.5 from EC) produces pppGpp (or ppGpp) from ATP and GTP (or GDP). SpoT (3.1.7.2 from EC) degrades ppGpp, but may also act as a secondary ppGpp synthetase. The two proteins are strongly similar. In many species, a single homologue to SpoT and RelA appears reponsible for both ppGpp synthesis and ppGpp degradation. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species. ; GO: 0015969 guanosine tetraphosphate metabolic process; PDB: 2BE3_B 1VJ7_B 3L9D_B.
Probab=98.72 E-value=4.7e-09 Score=91.90 Aligned_cols=63 Identities=21% Similarity=0.299 Sum_probs=52.8
Q ss_pred ccccchHHHHHHHHhcCC---CC--ccccccceEEecCCcchhhhhhhhhhhhhhhhhhccCccccCCcceeceecccc
Q 009540 449 GRHKSLYSIHCKMLKYAL---PS--LPNLIRESFVTEYSSLSHACFQKFQLLTIHGIGHILWKILCLHYLSVNIQLVPV 522 (532)
Q Consensus 449 GR~KhiYSIy~KM~kK~l---~f--i~Dlia~Riiv~~~~~~~~CY~a~~~~tvLGiVH~lWkPI~~~~f~dyIa~~~~ 522 (532)
+|+|+++|+++||.+++- .+ |.|++++|||+. ...+||.+ ++++|.+|.+. ..+++|||+ .|.
T Consensus 1 ~RvK~~~Sl~~Kl~r~~~~~~~~~~i~Dl~G~RIi~~---~~~d~~~v------~~~l~~~~~~~-~~~~~d~i~-~~~ 68 (115)
T PF04607_consen 1 SRVKSPESLIEKLRRKGGPDNPLKDIQDLVGIRIIVY---FPDDCYKV------LGLLHKLFDVK-IDRSKDYIA-NPK 68 (115)
T ss_dssp EEE--HHHHHHCHHHHTGCCCCCCCTCCSEEEEEEES---SCCHHHHH------HHHHHTHSSCE-EEEEEETTT-T--
T ss_pred CCCCCHHHHHHHHHhHCCCcccHHHhccccEEEEEEe---eHHHHHHH------HHHHHHcCCcc-ccccccccc-ccc
Confidence 699999999999999884 22 999999999997 36899987 99999999998 779999998 554
No 9
>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein. This small clade of proteins are found adjacent to other genes implicated in the catabolism of phosphonates. They are members of the TIGR00277 domain family and contain a series of five invariant histidines (the domain in general has only four).
Probab=98.27 E-value=2.6e-06 Score=82.29 Aligned_cols=72 Identities=28% Similarity=0.433 Sum_probs=58.3
Q ss_pred hcCCccccCc--chhHHHHHHHHHHHHhCCCHHHHHHHHhhcc---ccccc--------------CCHHHHHHHhcHHHH
Q 009540 244 HRGQMRASGD--PYLLHCVETAMLLAAIGANSTVVAAGLLHDT---LDDAF--------------LSYDYIFRTFGAGVA 304 (532)
Q Consensus 244 H~GQ~RkSGe--PYI~HpleVA~ILa~Lg~D~etIaAALLHDv---VEDT~--------------vTlEeIee~FG~eVA 304 (532)
+.|+...+|+ +++.|++++|.+...-|.|++.|+||||||+ ++|+. +..+.|+..||++|+
T Consensus 13 ~~g~~~y~Ge~Vs~leH~LQ~A~lA~~~Gad~elvvAALLHDIGhll~~~~~~~~~~g~~~~He~iga~~Lr~~F~~~V~ 92 (179)
T TIGR03276 13 EHGARQYGGEAVSQLEHALQCAQLAEAAGADDELIVAAFLHDIGHLLADEGATPMGRGGDDHHEELAADYLRELFSPSVT 92 (179)
T ss_pred hcCccccCCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcchhhhcccccccccCCCccHHHHHHHHHHHHcCHHHH
Confidence 4455555675 5999999999988899999999999999998 77543 235789999999999
Q ss_pred HHHHHhhcccc
Q 009540 305 DLVEGVSKLSQ 315 (532)
Q Consensus 305 ~LVegVTKls~ 315 (532)
.+|..-..-++
T Consensus 93 ~lV~~Hv~aKr 103 (179)
T TIGR03276 93 EPIRLHVQAKR 103 (179)
T ss_pred HHHHHHHHHHH
Confidence 99998776443
No 10
>COG2357 PpGpp synthetase catalytic domain [General function prediction only]
Probab=97.29 E-value=0.00034 Score=70.10 Aligned_cols=76 Identities=14% Similarity=0.083 Sum_probs=53.7
Q ss_pred HHHHHHhcCcccccccccccchHHHHHHHHhcCCCC--------ccccccceEEecCCcchhhhhhhhhhhhhhhhhhcc
Q 009540 433 LEQALKDKNISFLVLCGRHKSLYSIHCKMLKYALPS--------LPNLIRESFVTEYSSLSHACFQKFQLLTIHGIGHIL 504 (532)
Q Consensus 433 L~~~L~~~gI~~~~V~GR~KhiYSIy~KM~kK~l~f--------i~Dlia~Riiv~~~~~~~~CY~a~~~~tvLGiVH~l 504 (532)
.+.....+.|.+ |+||.|++=||-.|++|||+++ +.||.++||++.- +.|-|.+ +.++.+-
T Consensus 43 ~~~~~~~~pie~--Vt~RvK~~~Si~~Kl~RK~~~i~~~~~~e~i~DIaGIRI~c~F---~~DI~~v------~~~l~~~ 111 (231)
T COG2357 43 YEKLHDYNPIEH--VTSRVKSPESILEKLRRKGLEITYENLKEDIQDIAGIRIICQF---VDDIYRV------VDLLKSR 111 (231)
T ss_pred HHhhcCCCchHH--HhhccCCHHHHHHHHHhcCCCCChHHHHhHHHhhcceeEeeeh---HhhHHHH------HHHHhcc
Confidence 333334445653 9999999999999999999543 8999999999753 3555554 6666532
Q ss_pred CccccCCcceeceecc
Q 009540 505 WKILCLHYLSVNIQLV 520 (532)
Q Consensus 505 WkPI~~~~f~dyIa~~ 520 (532)
+-+..-+.||||.+.
T Consensus 112 -~d~~iv~~kDyi~n~ 126 (231)
T COG2357 112 -KDFTIVEEKDYIRNP 126 (231)
T ss_pred -cCccchhHHHHHhCC
Confidence 222234788999886
No 11
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif. Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).
Probab=95.50 E-value=0.025 Score=47.02 Aligned_cols=37 Identities=27% Similarity=0.272 Sum_probs=28.9
Q ss_pred CcchhHHHHHHHHHHHHhC------CCHHHHHHHHhhcccccc
Q 009540 252 GDPYLLHCVETAMLLAAIG------ANSTVVAAGLLHDTLDDA 288 (532)
Q Consensus 252 GePYI~HpleVA~ILa~Lg------~D~etIaAALLHDvVEDT 288 (532)
+++.+.|.+.|+.+...+. .......||||||+-+..
T Consensus 2 ~~~~~~H~~~v~~~~~~l~~~~~~~~~~~~~~a~LlHDig~~~ 44 (124)
T smart00471 2 DYHVFEHSLRVAQLAAALAEELGLLDIELLLLAALLHDIGKPG 44 (124)
T ss_pred CchHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHcccCcc
Confidence 5678899999998887554 345678999999997754
No 12
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity []. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria, archaea and eukaryotes. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; GO: 0008081 phosphoric diester hydrolase activity, 0046872 metal ion binding; PDB: 2CQZ_A 2Q14_C 3CCG_A 2PAU_A 2PAQ_B 2PAR_B 3BG2_A 3NQW_A 2QGS_B 2DQB_D ....
Probab=94.94 E-value=0.046 Score=46.23 Aligned_cols=33 Identities=24% Similarity=0.268 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHhCC------CH-HHHHHHHhhcccccc
Q 009540 256 LLHCVETAMLLAAIGA------NS-TVVAAGLLHDTLDDA 288 (532)
Q Consensus 256 I~HpleVA~ILa~Lg~------D~-etIaAALLHDvVEDT 288 (532)
+.|.+.|+.+...+.. +. ...+||||||+=.-.
T Consensus 2 ~~Hs~~V~~~a~~l~~~~~~~~~~~~l~~aaLlHDiGk~~ 41 (122)
T PF01966_consen 2 FEHSLRVAELAERLADRLGLEEDRELLRIAALLHDIGKIP 41 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTHHS
T ss_pred hhHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhcCCCC
Confidence 6799999988776432 22 266899999986544
No 13
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family. Members of this protein family are known, so far, in the Ascomycota, a branch of the Fungi, and contain an HD domain (pfam01966), found typically in various metal-dependent phosphohydrolases. The only characterized member of this family, from the soil fungus Myrothecium verrucaria, is cyanamide hydratase (EC 4.2.1.69), a zinc-containing homohexamer that adds water to the fertilizer cyanamide (NCNH2), a nitrile compound, to produce urea (NH2-CO-NH2). Homologs are likely to be nitrile hydratases.
Probab=93.73 E-value=0.75 Score=46.28 Aligned_cols=128 Identities=15% Similarity=0.084 Sum_probs=69.6
Q ss_pred ChhhHHHHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHH--------hCCCHHHH-HHHHhhcccc-cccCCHHHH
Q 009540 226 KIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAA--------IGANSTVV-AAGLLHDTLD-DAFLSYDYI 295 (532)
Q Consensus 226 ~~~d~~ll~kA~~fA~~aH~GQ~RkSGePYI~HpleVA~ILa~--------Lg~D~etI-aAALLHDvVE-DT~vTlEeI 295 (532)
++.|..++++|.+++.+... ..-+.|.++|...... ++.|.+++ +||||||+.. +.......+
T Consensus 34 ~iPdt~l~~~a~~~~~~~l~-------~~~~~Hs~RV~~~a~~ia~~e~~~~~~D~evl~lAALLHDIG~~~~~~~~~~~ 106 (228)
T TIGR03401 34 PLPDTPLVKFAQEYAKARLP-------PETYNHSLRVYYYGLAIARDQFPEWDLSDETWFLTCLLHDIGTTDENMTATKM 106 (228)
T ss_pred CCCChHHHHHHHHHHHhhCC-------HhhhHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhccccccCCcccC
Confidence 34577888899999877643 2457899998643332 26777644 7899999864 222111111
Q ss_pred H-HHhcHHHH-HHHHHhhcccccchHHhhccccchHHHHHHHHHHHhhc------c--CchhhHhHHhhhHhhccc-cCC
Q 009540 296 F-RTFGAGVA-DLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAM------A--DARAVLIKLADRLHNMMT-LDA 364 (532)
Q Consensus 296 e-e~FG~eVA-~LVegVTKls~l~~~~r~~~~~~~~~qAE~lRKMLLAm------a--DiRVVLIKLADRLhNMRt-L~~ 364 (532)
. +..|.+.+ +++...+ +.+. .+.+.+...+... . ++-+.||..||+++++-. ...
T Consensus 107 ~fe~~ga~~A~~~L~~~~---G~~~-----------~~~~~V~~aI~~H~~~~~~~~~~~e~~lvq~Ad~lDa~Ga~~~~ 172 (228)
T TIGR03401 107 SFEFYGGILALDVLKEQT---GANQ-----------DQAEAVAEAIIRHQDLGVDGTITTLGQLLQLATIFDNVGANTDL 172 (228)
T ss_pred CHHHHHHHHHHHHHHHCC---CCCH-----------HHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHhHccCChhh
Confidence 1 22333332 2222221 2211 1122222222111 1 346889999999999853 445
Q ss_pred CCHHHHHHHH
Q 009540 365 LPLCKRQRFA 374 (532)
Q Consensus 365 lp~ekq~riA 374 (532)
++++.+..+.
T Consensus 173 ~~~~~~~~v~ 182 (228)
T TIGR03401 173 VHPDTVDAVN 182 (228)
T ss_pred CCHHHHHHHH
Confidence 6666665443
No 14
>PRK12703 tRNA 2'-O-methylase; Reviewed
Probab=93.14 E-value=0.82 Score=48.74 Aligned_cols=147 Identities=16% Similarity=0.127 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHH----HhCCCHHH-HHHHHhhccccccc-------CCHHHHHHH-h
Q 009540 233 VIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLA----AIGANSTV-VAAGLLHDTLDDAF-------LSYDYIFRT-F 299 (532)
Q Consensus 233 l~kA~~fA~~aH~GQ~RkSGePYI~HpleVA~ILa----~Lg~D~et-IaAALLHDvVEDT~-------vTlEeIee~-F 299 (532)
.++++++-.+.+. .+..+.|.+.|+.+.. .++.|.+. ++||||||+-.... ...+-|++. |
T Consensus 172 ~ee~l~Ll~k~~~------~e~l~~Hs~rVa~lA~~LA~~~~~D~~ll~aAALLHDIGK~k~~~~~H~~~Ga~iL~e~G~ 245 (339)
T PRK12703 172 EDQCLDLLKKYGA------SDLLIRHVKTVYKLAMRIADCINADRRLVAAGALLHDIGRTKTNGIDHAVAGAEILRKENI 245 (339)
T ss_pred HHHHHHHHHHcCC------ChHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHCCC
Confidence 3455555443322 2335799999987644 35677664 46799999965322 122333332 4
Q ss_pred cHHHHHHHHHhhcccccchHHhhccccchHHHHHHHHHHHhhccCchhhHhHHhhhHhhccccCCCCHHHHHHHHHHhhh
Q 009540 300 GAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLE 379 (532)
Q Consensus 300 G~eVA~LVegVTKls~l~~~~r~~~~~~~~~qAE~lRKMLLAmaDiRVVLIKLADRLhNMRtL~~lp~ekq~riA~ETl~ 379 (532)
.++|+.+|+....- .++... .+...+..-...-..+-..+|-.||+|...... .+.+.+.+-.++.
T Consensus 246 ~e~i~~iIe~H~g~-G~~~~~---------~~~~gL~~~~~~P~TLEakIV~dADrL~~~~r~--v~~e~~~~k~~~~-- 311 (339)
T PRK12703 246 DDRVVSIVERHIGA-GITSEE---------AQKLGLPVKDYVPETIEEMIVAHADNLFAGDKR--LNLKQVMDKYRKK-- 311 (339)
T ss_pred CHHHHHHHHHHhcc-CCCcch---------hhccCCccccCCCCCHHHHHHHHHHHHhcCCCc--CCHHHHHHHHHhh--
Confidence 56788887665421 111000 000000000000013457899999999777542 3444332222221
Q ss_pred HHHHHHhhhChHHHHHHHHHHH
Q 009540 380 IFVPLANRLGISTWKVQLENLC 401 (532)
Q Consensus 380 IYAPLA~RLGI~~iK~ELEDLs 401 (532)
-++..++| +..|..|||.++
T Consensus 312 ~~~~~~~R--~~~l~~~~~~~~ 331 (339)
T PRK12703 312 GLHDAAER--IKKLHEELSSIC 331 (339)
T ss_pred hhhHHHHH--HHHHHHHHHHHh
Confidence 12334455 456666666654
No 15
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif
Probab=93.08 E-value=0.17 Score=42.63 Aligned_cols=35 Identities=23% Similarity=0.216 Sum_probs=26.3
Q ss_pred chhHHHHHHHHHHHHhCC--------CHHHHHHHHhhcccccc
Q 009540 254 PYLLHCVETAMLLAAIGA--------NSTVVAAGLLHDTLDDA 288 (532)
Q Consensus 254 PYI~HpleVA~ILa~Lg~--------D~etIaAALLHDvVEDT 288 (532)
+...|.+.|+.+...+.. .....+||||||+-+..
T Consensus 2 ~~~~Hs~~v~~~~~~~~~~~~~~~~~~~~l~~aaLlHDig~~~ 44 (145)
T cd00077 2 HRFEHSLRVAQLARRLAEELGLSEEDIELLRLAALLHDIGKPG 44 (145)
T ss_pred chHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHhcCCcc
Confidence 457899999887775432 35677899999998754
No 16
>TIGR00295 conserved hypothetical protein TIGR00295. This set of orthologs is narrowly defined, comprising proteins found in three Archaea but not in Pyrococcus horikoshii. The closest homologs are other archaeal proteins that appear to be represent distinct orthologous clusters.
Probab=85.50 E-value=5.9 Score=37.61 Aligned_cols=56 Identities=21% Similarity=0.317 Sum_probs=34.1
Q ss_pred cchhHHHHHHHHHHH----HhC-----CCH-HHHHHHHhhccccccc-------CCHHHHHHH--hcHHHHHHHHH
Q 009540 253 DPYLLHCVETAMLLA----AIG-----ANS-TVVAAGLLHDTLDDAF-------LSYDYIFRT--FGAGVADLVEG 309 (532)
Q Consensus 253 ePYI~HpleVA~ILa----~Lg-----~D~-etIaAALLHDvVEDT~-------vTlEeIee~--FG~eVA~LVeg 309 (532)
+..+.|.+.|+.+.. .++ .|. ...+||||||+-.... ...+ +-+. |.++++.+|..
T Consensus 12 ~~~~~Hs~~Va~~A~~ia~~~~~~~~~~d~~~l~~aaLLHDIGK~~~~~~~H~~~G~~-iL~~~g~~~~i~~iI~~ 86 (164)
T TIGR00295 12 ESVRRHCLAVARVAMELAENIRKKGHEVDMDLVLKGALLHDIGRARTHGFEHFVKGAE-ILRKEGVDEKIVRIAER 86 (164)
T ss_pred ccHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHhcCCcccCCCCCHHHHHHH-HHHHcCCCHHHHHHHHH
Confidence 456789999987543 244 454 4668999999865321 1222 3333 44677777754
No 17
>PRK10119 putative hydrolase; Provisional
Probab=84.79 E-value=9.2 Score=38.77 Aligned_cols=52 Identities=13% Similarity=0.080 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHH----hCCCHH-HHHHHHhhcccc
Q 009540 232 FVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAA----IGANST-VVAAGLLHDTLD 286 (532)
Q Consensus 232 ll~kA~~fA~~aH~GQ~RkSGePYI~HpleVA~ILa~----Lg~D~e-tIaAALLHDvVE 286 (532)
++.++.+|+.+...+. .+|. -+.|..+|...... -+.|.. +.+||||||+..
T Consensus 6 ~~~~~~~~v~~~l~~~--~~~H-D~~Hi~RV~~lA~~Ia~~e~~D~~vv~lAAlLHDv~d 62 (231)
T PRK10119 6 WQAQFENWLKNHHQHQ--DAAH-DICHFRRVWATAQKLAADDDVDMLVVLTACYFHDIVS 62 (231)
T ss_pred HHHHHHHHHHHHhhcC--CCcc-ChHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhcch
Confidence 4455566666544432 2332 25577777643333 366665 558999999974
No 18
>COG1418 Predicted HD superfamily hydrolase [General function prediction only]
Probab=82.30 E-value=2.3 Score=42.60 Aligned_cols=52 Identities=27% Similarity=0.236 Sum_probs=36.2
Q ss_pred cCcchhHHHHHHHHHHH----HhCCCHHHH-HHHHhhcccccccCCH--------HHHHHHhcHH
Q 009540 251 SGDPYLLHCVETAMLLA----AIGANSTVV-AAGLLHDTLDDAFLSY--------DYIFRTFGAG 302 (532)
Q Consensus 251 SGePYI~HpleVA~ILa----~Lg~D~etI-aAALLHDvVEDT~vTl--------EeIee~FG~e 302 (532)
+|..-+.|.++|+.+.. +.|.|.+.+ .||||||+..-..... .++.+.|+..
T Consensus 33 ~~~~~l~H~~~Va~lA~~Ia~~~g~D~~l~~~aaLLHDIg~~~~~~~~~~h~~~gae~a~~~~~~ 97 (222)
T COG1418 33 YGQHVLEHSLRVAYLAYRIAEEEGVDPDLALRAALLHDIGKAIDHEPGGSHAEIGAEIARKFLED 97 (222)
T ss_pred ccchHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhccccccCCccchHHHHHHHHHHHccc
Confidence 78888999999987554 368888754 6889999986443321 2555556554
No 19
>COG4341 Predicted HD phosphohydrolase [General function prediction only]
Probab=79.92 E-value=2 Score=41.86 Aligned_cols=35 Identities=46% Similarity=0.654 Sum_probs=29.9
Q ss_pred ccCcch--hHHHHHHHHHHHHhCCCHHHHHHHHhhcc
Q 009540 250 ASGDPY--LLHCVETAMLLAAIGANSTVVAAGLLHDT 284 (532)
Q Consensus 250 kSGePY--I~HpleVA~ILa~Lg~D~etIaAALLHDv 284 (532)
.+|+|. ..|.++.|.+...-|.+.+.|+||||||+
T Consensus 24 y~ge~VTq~eHaLQ~AtlAerdGa~~~lVaaALLHDi 60 (186)
T COG4341 24 YSGEPVTQLEHALQCATLAERDGADTALVAAALLHDI 60 (186)
T ss_pred cccCcchhhhhHHHHhHHHHhcCCcHHHHHHHHHHhH
Confidence 367774 58999999877778999999999999986
No 20
>PRK03826 5'-nucleotidase; Provisional
Probab=75.08 E-value=16 Score=36.09 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=24.1
Q ss_pred cchhHHHHHHHHHHHHh----------CCCHH-HHHHHHhhccccc
Q 009540 253 DPYLLHCVETAMLLAAI----------GANST-VVAAGLLHDTLDD 287 (532)
Q Consensus 253 ePYI~HpleVA~ILa~L----------g~D~e-tIaAALLHDvVED 287 (532)
|.--.|.+.||.+.-.+ ++|.+ ++..||+||+.|-
T Consensus 27 EsVAeHs~~vAliA~~La~i~~~~~~~~vd~~rv~~~aL~HDl~E~ 72 (195)
T PRK03826 27 ENVSEHSLQVAMVAHALAVIKNRKFGGNLNAERIALLAMYHDASEV 72 (195)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcchHHH
Confidence 45668999988764322 24544 5668999999883
No 21
>TIGR00277 HDIG uncharacterized domain HDIG. This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG.
Probab=68.82 E-value=8.4 Score=30.37 Aligned_cols=34 Identities=32% Similarity=0.403 Sum_probs=23.6
Q ss_pred cchhHHHHHHHHHHHH----hCCCHH-HHHHHHhhcccc
Q 009540 253 DPYLLHCVETAMLLAA----IGANST-VVAAGLLHDTLD 286 (532)
Q Consensus 253 ePYI~HpleVA~ILa~----Lg~D~e-tIaAALLHDvVE 286 (532)
.+-..|.+.|+..... +++|.+ ...||||||+=.
T Consensus 3 ~~~~~H~~~v~~~a~~la~~~~~~~~~l~~AalLHDiG~ 41 (80)
T TIGR00277 3 QNVLQHSLEVAKLAEALARELGLDVELARRGALLHDIGK 41 (80)
T ss_pred chHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHccCC
Confidence 3456788888776553 466664 667999999744
No 22
>PF13023 HD_3: HD domain; PDB: 1XX7_D 2GZ4_B 4DMB_B.
Probab=66.73 E-value=15 Score=34.89 Aligned_cols=95 Identities=19% Similarity=0.222 Sum_probs=50.3
Q ss_pred cchhHHHHHHHHHHH---H-hC--CCH-HHHHHHHhhcccccc--cCCHHH--HHHHhcHHHHHHHHHhhcccccchHHh
Q 009540 253 DPYLLHCVETAMLLA---A-IG--ANS-TVVAAGLLHDTLDDA--FLSYDY--IFRTFGAGVADLVEGVSKLSQLSKLAR 321 (532)
Q Consensus 253 ePYI~HpleVA~ILa---~-Lg--~D~-etIaAALLHDvVEDT--~vTlEe--Iee~FG~eVA~LVegVTKls~l~~~~r 321 (532)
+.--.|...||.+-. . .+ +|. .++..||+||+.|-- +++.-. ..+.+-..-...++.+..+ ++.
T Consensus 21 EsVAeHS~~vA~~a~~la~~~~~~~d~~k~~~~aL~HDl~E~~~GDi~~~~~~~~~~~~~~E~~a~~~l~~~--Lp~--- 95 (165)
T PF13023_consen 21 ESVAEHSWRVALIALLLAEEAGPDLDIEKVVKMALFHDLPEAITGDIPPPDGVDKEEKEEREEAAIEELFSL--LPE--- 95 (165)
T ss_dssp -BHHHHHHHHHHHHHHHHHHHH-HC-HHHHHHHHHHTTTTHHHH----HHH-CCHHHHHHHHHHHHHHHCTT--SSC---
T ss_pred ccHHHHHHHHHHHHHHHhHHhcccCCHHHHHHHHhhccchhhhcCCCCCcccchHHHHHHHHHHHHHHHHHH--hhh---
Confidence 556789988877533 2 34 665 477888999999842 233211 1111222222333333222 110
Q ss_pred hccccchHHHHHHHHHHHhhc---cCchhhHhHHhhhHhhcc
Q 009540 322 ENNTASKTVEADRLHTMFLAM---ADARAVLIKLADRLHNMM 360 (532)
Q Consensus 322 ~~~~~~~~~qAE~lRKMLLAm---aDiRVVLIKLADRLhNMR 360 (532)
...+.++.++.-+ ..+-+.++|-+|+|.-+-
T Consensus 96 --------~l~~~~~~l~~E~e~~~s~ea~~vk~~D~l~~~l 129 (165)
T PF13023_consen 96 --------ELQEELKELWEEFEEGESPEAKLVKAADKLEPLL 129 (165)
T ss_dssp --------HHHHHHHHHHHHHHHT-SHHHHHHHHHHHHHHHH
T ss_pred --------hHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhHHH
Confidence 1234455554433 368899999999998764
No 23
>PF09371 Tex_N: Tex-like protein N-terminal domain; InterPro: IPR018974 This presumed domain is found at the N terminus of Q45388 from SWISSPROT. This protein defines a novel family of prokaryotic transcriptional accessory factors []. ; PDB: 2OCE_A 3BZK_A 3BZC_A.
Probab=65.84 E-value=87 Score=31.04 Aligned_cols=47 Identities=19% Similarity=0.251 Sum_probs=25.2
Q ss_pred cCCCCHHHHHHHH-----HHhhhHHHHH----------HhhhChHHHHHH--------HHHHHHhhcChh
Q 009540 362 LDALPLCKRQRFA-----KETLEIFVPL----------ANRLGISTWKVQ--------LENLCFKHLNPD 408 (532)
Q Consensus 362 L~~lp~ekq~riA-----~ETl~IYAPL----------A~RLGI~~iK~E--------LEDLsFkyL~Pe 408 (532)
-..++++-+.++- +|--+||+|. |..+|+..+... ++..+-+|++|+
T Consensus 71 qgkLt~eL~~~I~~a~tl~elEdlY~PyK~kr~T~A~~Are~GLeplA~~il~~~~~~~~~~a~~~v~~~ 140 (193)
T PF09371_consen 71 QGKLTPELKQAIENATTLQELEDLYLPYKPKRKTRATIAREAGLEPLADKILEQPESDPEVEAKKFVNEE 140 (193)
T ss_dssp TT---HHHHHHHHH--SHHHHHHHHGGGS---S-HHHHHHHTTTHHHHHHHHH-TTS-HHHHHHTT-BGG
T ss_pred cccCCHHHHHHHHhcCCHHHHHHHHhhhccCcCCHHHHHHHcCCHHHHHHHHcCCccchHHHHHHHhCcc
Confidence 3345555444442 4555777774 667777665443 455667777776
No 24
>PRK00106 hypothetical protein; Provisional
Probab=63.15 E-value=22 Score=40.41 Aligned_cols=37 Identities=35% Similarity=0.472 Sum_probs=28.4
Q ss_pred cCcchhHHHHHHHHHHH----HhCCC-HHHHHHHHhhccccc
Q 009540 251 SGDPYLLHCVETAMLLA----AIGAN-STVVAAGLLHDTLDD 287 (532)
Q Consensus 251 SGePYI~HpleVA~ILa----~Lg~D-~etIaAALLHDvVED 287 (532)
.|...+.|.++||.+.. .+|+| ...-.||||||+=.-
T Consensus 347 y~qnl~~HSv~VA~lA~~lA~~lgld~e~a~~AGLLHDIGK~ 388 (535)
T PRK00106 347 YGQNVLRHSVEVGKLAGILAGELGENVALARRAGFLHDMGKA 388 (535)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCc
Confidence 46778999999987643 47888 456789999997544
No 25
>COG1896 Predicted hydrolases of HD superfamily [General function prediction only]
Probab=61.03 E-value=27 Score=34.39 Aligned_cols=98 Identities=18% Similarity=0.199 Sum_probs=50.5
Q ss_pred cCcchhHHHHHHHHHHH-------HhC--CCH-HHHHHHHhhcccccc--cCC--HHHHHHHhcHHHHHHHHHhhccccc
Q 009540 251 SGDPYLLHCVETAMLLA-------AIG--ANS-TVVAAGLLHDTLDDA--FLS--YDYIFRTFGAGVADLVEGVSKLSQL 316 (532)
Q Consensus 251 SGePYI~HpleVA~ILa-------~Lg--~D~-etIaAALLHDvVEDT--~vT--lEeIee~FG~eVA~LVegVTKls~l 316 (532)
.++.-..|.+.||.+-- ..| +|+ ..+..||+||.-|-- +++ ............-...+.+.+.. +
T Consensus 30 ~~eSvaeHs~~va~la~~la~~~~~~~~~vn~~k~~~~AL~HD~~E~~~GDi~tp~k~~~~~~~~~~~e~e~~~~~~~-~ 108 (193)
T COG1896 30 NPESVAEHSFRVAILALLLADILNAKGGEVNPEKVALMALVHDLPEALTGDIPTPVKYARAGLYKEEEEAEEAAIHLL-F 108 (193)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHhcccHHHHhCCCCCchhhhcchHHHHHHHHHHHHHHcc-c
Confidence 45667778777765332 223 343 477789999999852 222 22222233333333333333321 1
Q ss_pred chHHhhccccchHHHHHHHHHHHhhccCchhhHhHHhhhHhhc
Q 009540 317 SKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNM 359 (532)
Q Consensus 317 ~~~~r~~~~~~~~~qAE~lRKMLLAmaDiRVVLIKLADRLhNM 359 (532)
+- . .+. .+-+|.. +.-....+.+||.||+|..+
T Consensus 109 ~~-p-------~e~-~~~~~~~-~~~~s~ea~~vk~aDkl~~~ 141 (193)
T COG1896 109 GL-P-------EEL-LELFREY-EKRSSLEARIVKDADKLELL 141 (193)
T ss_pred CC-c-------HHH-HHHHHHH-HccCCHHHHHHHHHHHHHHH
Confidence 10 0 001 1223322 22236889999999999988
No 26
>PRK12704 phosphodiesterase; Provisional
Probab=60.25 E-value=24 Score=39.77 Aligned_cols=36 Identities=36% Similarity=0.498 Sum_probs=26.1
Q ss_pred cCcchhHHHHHHHHHHH----HhCCCHH-HHHHHHhhcccc
Q 009540 251 SGDPYLLHCVETAMLLA----AIGANST-VVAAGLLHDTLD 286 (532)
Q Consensus 251 SGePYI~HpleVA~ILa----~Lg~D~e-tIaAALLHDvVE 286 (532)
.+...+.|.++||.+.. .+|+|++ ...||||||+=.
T Consensus 332 ~~qn~l~Hs~~Va~lA~~lA~~lgld~~~a~~AgLLHDIGK 372 (520)
T PRK12704 332 YGQNVLQHSIEVAHLAGLMAAELGLDVKLAKRAGLLHDIGK 372 (520)
T ss_pred CCCcHhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHccCc
Confidence 34557889999987543 3688754 557999999644
No 27
>PF12917 HD_2: HD containing hydrolase-like enzyme ; PDB: 3MZO_B.
Probab=58.18 E-value=19 Score=36.49 Aligned_cols=98 Identities=13% Similarity=0.159 Sum_probs=48.4
Q ss_pred cchhHHHHHHHHHHHHh-------C--CCH-HHHHHHHhhcccccc------cCCHHHHHHHhcHHHHHHHHHhhccccc
Q 009540 253 DPYLLHCVETAMLLAAI-------G--ANS-TVVAAGLLHDTLDDA------FLSYDYIFRTFGAGVADLVEGVSKLSQL 316 (532)
Q Consensus 253 ePYI~HpleVA~ILa~L-------g--~D~-etIaAALLHDvVEDT------~vTlEeIee~FG~eVA~LVegVTKls~l 316 (532)
+.--.|...||.+..-+ | .|. .....||.||..|-. ++. .+.++...++..|.+.-.-
T Consensus 28 ~nVA~HSf~Va~iA~~Lg~iee~~G~~vd~~~lyekAL~HD~~E~FtGDI~TPVK------y~tPelr~~~~~VE~~m~~ 101 (215)
T PF12917_consen 28 HNVAEHSFKVAMIAQFLGDIEEQFGNEVDWKELYEKALNHDYPEIFTGDIKTPVK------YATPELREMLAQVEEEMTE 101 (215)
T ss_dssp -BHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHTTGGGGTS----S-SS------SS-HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCccCHHHHHHHHhccccHHHHcCCCCCccc------ccCHHHHHHHHHHHHHHHH
Confidence 34557988887765433 3 244 344789999999853 222 1233333343333332111
Q ss_pred chHHhhccccchHHHHHHHHHHHhhccC--chhhHhHHhhhHhhcc
Q 009540 317 SKLARENNTASKTVEADRLHTMFLAMAD--ARAVLIKLADRLHNMM 360 (532)
Q Consensus 317 ~~~~r~~~~~~~~~qAE~lRKMLLAmaD--iRVVLIKLADRLhNMR 360 (532)
...... - .... .+.+|.++.--.| +-..+||.||.++-+-
T Consensus 102 ~~i~~~-i--P~e~-q~~Y~~~l~E~KDdt~EG~Iv~~ADkidal~ 143 (215)
T PF12917_consen 102 NFIKKE-I--PEEF-QEAYRRRLKEGKDDTLEGQIVKAADKIDALY 143 (215)
T ss_dssp HHHHHH-S---GGG-HHHHHHHHS---SSSHHHHHHHHHHHHHHHH
T ss_pred HHHHhh-C--CHHH-HHHHHHHhhcCCcccHHHHHHHHHHHHHHHH
Confidence 101000 0 0111 2345555543333 7889999999998764
No 28
>PRK12705 hypothetical protein; Provisional
Probab=57.08 E-value=41 Score=38.03 Aligned_cols=36 Identities=39% Similarity=0.510 Sum_probs=27.6
Q ss_pred cCcchhHHHHHHHHHHH----HhCCCHH-HHHHHHhhcccc
Q 009540 251 SGDPYLLHCVETAMLLA----AIGANST-VVAAGLLHDTLD 286 (532)
Q Consensus 251 SGePYI~HpleVA~ILa----~Lg~D~e-tIaAALLHDvVE 286 (532)
.|...+.|.++||.+.. .+|+|++ ...||||||+=.
T Consensus 320 ygqnvl~HSl~VA~lA~~LA~~lGld~d~a~~AGLLHDIGK 360 (508)
T PRK12705 320 YGQNVLSHSLEVAHLAGIIAAEIGLDPALAKRAGLLHDIGK 360 (508)
T ss_pred CCchHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHcCC
Confidence 45667899999988654 4688764 567999999865
No 29
>COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]
Probab=57.01 E-value=14 Score=36.50 Aligned_cols=37 Identities=24% Similarity=0.389 Sum_probs=27.9
Q ss_pred cchhHHHHHHHHHHHH----hCCCHH-HHHHHHhhccccccc
Q 009540 253 DPYLLHCVETAMLLAA----IGANST-VVAAGLLHDTLDDAF 289 (532)
Q Consensus 253 ePYI~HpleVA~ILa~----Lg~D~e-tIaAALLHDvVEDT~ 289 (532)
++-+.|+++||+...+ .++|.+ +-+||+|||.-.+-+
T Consensus 16 ~kR~~H~l~V~~~A~~LA~~y~~d~~kA~~AgilHD~aK~~p 57 (187)
T COG1713 16 EKRFEHCLGVAETAIELAEAYGLDPEKAYLAGILHDIAKELP 57 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhCC
Confidence 4568899999886654 577764 668999999886543
No 30
>COG1078 HD superfamily phosphohydrolases [General function prediction only]
Probab=55.80 E-value=6.9 Score=42.96 Aligned_cols=31 Identities=26% Similarity=0.274 Sum_probs=22.2
Q ss_pred chhHHHHHHHHHHHHh----CC--CH--------HHHHHHHhhcc
Q 009540 254 PYLLHCVETAMLLAAI----GA--NS--------TVVAAGLLHDT 284 (532)
Q Consensus 254 PYI~HpleVA~ILa~L----g~--D~--------etIaAALLHDv 284 (532)
--+.|.+.|..+...+ +. ++ .+.+||||||+
T Consensus 51 TRFeHSLGV~~la~~~~~~l~~~~~~~~~~~~~~~~~~AALLHDI 95 (421)
T COG1078 51 TRFEHSLGVYHLARRLLEHLEKNSEEEIDEEERLLVRLAALLHDI 95 (421)
T ss_pred cccchhhHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHcc
Confidence 3478999998776643 21 11 48899999996
No 31
>TIGR00488 putative HD superfamily hydrolase of NAD metabolism. The function of this protein family is unknown. Members of this family of uncharacterized proteins from the Mycoplasmas are longer at the amino end, fused to a region of nicotinamide nucleotide adenylyltransferase, an NAD salvage biosynthesis enzyme. Members are putative metal-dependent phosphohydrolases for NAD metabolism.
Probab=55.44 E-value=14 Score=34.51 Aligned_cols=34 Identities=21% Similarity=0.260 Sum_probs=24.6
Q ss_pred cchhHHHHHHHHHHHH----hCCCH-HHHHHHHhhcccc
Q 009540 253 DPYLLHCVETAMLLAA----IGANS-TVVAAGLLHDTLD 286 (532)
Q Consensus 253 ePYI~HpleVA~ILa~----Lg~D~-etIaAALLHDvVE 286 (532)
+.-+.|.+.||.+... ++.|+ ..-+||||||+=.
T Consensus 7 ~~r~~Hsl~Va~~a~~lA~~~~~d~e~a~~AGLLHDIGk 45 (158)
T TIGR00488 7 EHRYQHCLGVGQTAKQLAEANKLDSKKAEIAGAYHDLAK 45 (158)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhc
Confidence 3457899999875543 56654 4668999999865
No 32
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=54.05 E-value=42 Score=37.83 Aligned_cols=35 Identities=37% Similarity=0.542 Sum_probs=25.9
Q ss_pred CcchhHHHHHHHHHHH----HhCCCHH-HHHHHHhhcccc
Q 009540 252 GDPYLLHCVETAMLLA----AIGANST-VVAAGLLHDTLD 286 (532)
Q Consensus 252 GePYI~HpleVA~ILa----~Lg~D~e-tIaAALLHDvVE 286 (532)
|...+.|.++||.+.. .+|+|++ ...||||||+=.
T Consensus 327 ~~~~l~Hs~~VA~lA~~LA~~lgld~~~a~~AGLLHDIGK 366 (514)
T TIGR03319 327 GQNVLQHSIEVAHLAGIMAAELGEDVKLAKRAGLLHDIGK 366 (514)
T ss_pred CccHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHhcCc
Confidence 4446889999987644 4788875 456999999744
No 33
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=48.38 E-value=58 Score=34.53 Aligned_cols=32 Identities=28% Similarity=0.260 Sum_probs=24.8
Q ss_pred chhHHHHHHHHHHHHh-----CCCHH-HHHHHHhhccc
Q 009540 254 PYLLHCVETAMLLAAI-----GANST-VVAAGLLHDTL 285 (532)
Q Consensus 254 PYI~HpleVA~ILa~L-----g~D~e-tIaAALLHDvV 285 (532)
-.+.|-++|+.+...+ .+|.+ .+++|||||+=
T Consensus 159 GLleHtl~v~~~~~~l~~~y~~~n~dll~agalLHDiG 196 (314)
T PRK13480 159 GLAYHVVSMLRLAKSICDLYPSLNKDLLYAGIILHDLG 196 (314)
T ss_pred HHHHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhh
Confidence 4678999999988765 46766 56777999974
No 34
>PRK01286 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=47.44 E-value=30 Score=37.04 Aligned_cols=31 Identities=29% Similarity=0.350 Sum_probs=23.4
Q ss_pred chhHHHHHHHHHHHH----hCCCHHHH-HHHHhhcc
Q 009540 254 PYLLHCVETAMLLAA----IGANSTVV-AAGLLHDT 284 (532)
Q Consensus 254 PYI~HpleVA~ILa~----Lg~D~etI-aAALLHDv 284 (532)
.-++|.++|+.+-.. ++.+++.+ +|||+||+
T Consensus 62 tR~~Hsl~V~~iar~~~~~l~~~~~l~~aaaL~HDi 97 (336)
T PRK01286 62 TRLTHTLEVAQIARTIARALRLNEDLTEAIALGHDL 97 (336)
T ss_pred cHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcC
Confidence 458999999996554 57766544 68999996
No 35
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=46.48 E-value=3.7e+02 Score=32.15 Aligned_cols=114 Identities=18% Similarity=0.307 Sum_probs=66.4
Q ss_pred HHHHHHHhhccCchhhHhHHhhhHhhccccCCCCHHHHHHHHHHhhhHHHHHHhhhChHHHHHHHHHHHHhhcChhhHHH
Q 009540 333 DRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTE 412 (532)
Q Consensus 333 E~lRKMLLAmaDiRVVLIKLADRLhNMRtL~~lp~ekq~riA~ETl~IYAPLA~RLGI~~iK~ELEDLsFkyL~Pe~Y~~ 412 (532)
|.+..+. .+.++. ||||-+.+.-.+ +.+..|. ..|+.++---|-.-|+ .++.|++.+-+ +-..-.+
T Consensus 152 e~l~~~~-~i~~~~----klad~iaa~l~~---~~~~kQ~-iLe~~~v~~Rlek~l~--~l~~ei~~~~~---ek~I~~k 217 (782)
T COG0466 152 EELQSLN-SIDDPG----KLADTIAAHLPL---KLEEKQE-ILETLDVKERLEKLLD--LLEKEIDLLQL---EKRIRKK 217 (782)
T ss_pred HHHHHHh-cccchH----HHHHHHHHhCCC---CHHHHHH-HHHhCCHHHHHHHHHH--HHHHHHHHHHH---HHHHHHH
Confidence 3444333 455565 999999866543 2333333 3456666555544443 56777775443 3445556
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHHHHHhcCcccccccccccchHHHHHHHHhcCCC
Q 009540 413 LSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKYALP 467 (532)
Q Consensus 413 I~~~L~e~~re~~I~~vi~~L~~~L~~~gI~~~~V~GR~KhiYSIy~KM~kK~l~ 467 (532)
+++.++++.||-|+.+-+..|+++|-... + ++ .-+=.+.+|+.+.+++
T Consensus 218 Vk~~meK~QREyyL~EQlKaIqkELG~~~---d---~~-~e~~~~~~kie~~~~p 265 (782)
T COG0466 218 VKEQMEKSQREYYLREQLKAIQKELGEDD---D---DK-DEVEELREKIEKLKLP 265 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCc---c---ch-hHHHHHHHHHhhcCCC
Confidence 66666777789999988888888885432 1 11 2334455666555543
No 36
>PRK03007 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=46.42 E-value=35 Score=37.74 Aligned_cols=57 Identities=25% Similarity=0.251 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHHHhcCCccccC-----cchhHHHHHHHHHHHH----hCCCHH-HHHHHHhhccc
Q 009540 229 REDFVIKAFYEAERAHRGQMRASG-----DPYLLHCVETAMLLAA----IGANST-VVAAGLLHDTL 285 (532)
Q Consensus 229 d~~ll~kA~~fA~~aH~GQ~RkSG-----ePYI~HpleVA~ILa~----Lg~D~e-tIaAALLHDvV 285 (532)
|.++|...-.|-.-.++.|.-..+ ..-++|.++||.+-.. ++.+++ +.+|||+||+=
T Consensus 40 DrdRIi~S~afRRL~~KtQVf~~~~~Df~~tRltHslev~~~~r~~~~~~~~~~~~~~~~~l~hd~G 106 (428)
T PRK03007 40 DRARVLHSAALRRLADKTQVVGPREGDTPRTRLTHSLEVAQIGRGIAAGLGCDPDLVDLAGLAHDIG 106 (428)
T ss_pred hHHHHhCCHHHHhhhccceeccCCCCCccccHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCC
Confidence 556677667777777888854322 2347999999987664 566654 55789999963
No 37
>PF05153 DUF706: Family of unknown function (DUF706) ; InterPro: IPR007828 Inositol oxygenase (1.13.99.1 from EC) is involved in the biosynthesis of UDP-glucuronic acid (UDP-GlcA), providing nucleotide sugars for cell-wall polymers. It may be also involved in plant ascorbate biosynthesis [, ].; GO: 0005506 iron ion binding, 0050113 inositol oxygenase activity, 0019310 inositol catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 2HUO_A 3BXD_A 2IBN_A.
Probab=46.30 E-value=35 Score=35.29 Aligned_cols=53 Identities=17% Similarity=0.174 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHHhCCCHHHH-HHHHhhcc
Q 009540 232 FVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVV-AAGLLHDT 284 (532)
Q Consensus 232 ll~kA~~fA~~aH~GQ~RkSGePYI~HpleVA~ILa~Lg~D~etI-aAALLHDv 284 (532)
.|.+|+++....-..--.....|-|.|++++|+.+..-..+++-+ .+||+||.
T Consensus 40 ti~eA~~~L~~LvDeSDPD~d~~~i~H~lQTAEaiR~d~~~~dW~~LtGLiHDL 93 (253)
T PF05153_consen 40 TIWEALELLNTLVDESDPDTDLPQIQHALQTAEAIRRDHPDPDWMQLTGLIHDL 93 (253)
T ss_dssp -HHHHHHHGGG---TT-TT--S-HHHHHHHHHHHHHHHSTT-HHHHHHHHHTTG
T ss_pred eHHHHHHHHHHhccCccCCCchhHHHHHHHHHHHHHHhCCCcchhhheehhccc
Confidence 356666665444332222346789999999999999875666655 69999985
No 38
>KOG1573 consensus Aldehyde reductase [General function prediction only]
Probab=44.56 E-value=98 Score=30.55 Aligned_cols=52 Identities=13% Similarity=0.141 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHHhCCCHHHH-HHHHhhcc
Q 009540 233 VIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVV-AAGLLHDT 284 (532)
Q Consensus 233 l~kA~~fA~~aH~GQ~RkSGePYI~HpleVA~ILa~Lg~D~etI-aAALLHDv 284 (532)
|.++.++....-...--.=.+|-|.|+++.|+....-..|.+-+ .+||+||.
T Consensus 75 i~ec~ell~~~vDESDPDlDepni~Ha~QtAE~iR~~~Pd~dWlHLtaLiHDL 127 (204)
T KOG1573|consen 75 IWECCELLNEVVDESDPDLDEPNIQHALQTAEAIRKDYPDEDWLHLTALIHDL 127 (204)
T ss_pred HHHHHHHHHhhhcccCCCCchHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 55666655443222111135899999999999888766666644 68899984
No 39
>PRK00117 recX recombination regulator RecX; Reviewed
Probab=43.15 E-value=60 Score=30.14 Aligned_cols=76 Identities=12% Similarity=0.198 Sum_probs=46.3
Q ss_pred HHHHHHhhcChhhH--HHHHHHHHHHH-hHHhHHHHHHHHHH-------HHHhcCcccccccccccchHHHHHHHHhcCC
Q 009540 397 LENLCFKHLNPDQH--TELSSKLVECF-DEAMVTSAIEKLEQ-------ALKDKNISFLVLCGRHKSLYSIHCKMLKYAL 466 (532)
Q Consensus 397 LEDLsFkyL~Pe~Y--~~I~~~L~e~~-re~~I~~vi~~L~~-------~L~~~gI~~~~V~GR~KhiYSIy~KM~kK~l 466 (532)
.-+.+++||--..| .+|.++|.++. .++.|+.+++.|.+ .+.+.=+.. -..+.+...-|.+||.+||+
T Consensus 13 a~~~al~~L~~r~~s~~el~~kL~~kg~~~~~i~~vl~~l~~~~~ldD~~~a~~~~~~--~~~~~~g~~~I~~~L~~kGi 90 (157)
T PRK00117 13 ARARALRLLARREHSRAELRRKLAAKGFSEEVIEAVLDRLKEEGLLDDERFAESFVRS--RARKGYGPRRIRQELRQKGV 90 (157)
T ss_pred HHHHHHHHHccchhHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH--HHhCCchHHHHHHHHHHcCC
Confidence 34556666655555 57777777763 45666777666643 111111221 12456788999999999999
Q ss_pred CC--cccccc
Q 009540 467 PS--LPNLIR 474 (532)
Q Consensus 467 ~f--i~Dlia 474 (532)
+. |.++++
T Consensus 91 ~~~~I~~~l~ 100 (157)
T PRK00117 91 DREIIEEALA 100 (157)
T ss_pred CHHHHHHHHH
Confidence 86 444443
No 40
>PRK14137 recX recombination regulator RecX; Provisional
Probab=42.34 E-value=40 Score=33.36 Aligned_cols=79 Identities=18% Similarity=0.228 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhhcChhhH--HHHHHHHHHHH-hHHhHHHHHHHHHHHHHhcCcc----c-c-cccccccchHHHHHHHH
Q 009540 392 TWKVQLENLCFKHLNPDQH--TELSSKLVECF-DEAMVTSAIEKLEQALKDKNIS----F-L-VLCGRHKSLYSIHCKML 462 (532)
Q Consensus 392 ~iK~ELEDLsFkyL~Pe~Y--~~I~~~L~e~~-re~~I~~vi~~L~~~L~~~gI~----~-~-~V~GR~KhiYSIy~KM~ 462 (532)
+....+.+.|+++|--..| ++|.++|.++. .+..|+.+++.|. +.|.- | + ....+.+..+-|-++|+
T Consensus 37 e~~~~~~~~Al~~Ls~R~rS~~ELr~KL~~kg~~~e~Ie~vI~rL~----e~gyLDD~rfAe~~~~~k~~Gp~rI~~eL~ 112 (195)
T PRK14137 37 EAREALLAYAFRALAARAMTAAELRAKLERRSEDEALVTEVLERVQ----ELGYQDDAQVARAENSRRGVGALRVRQTLR 112 (195)
T ss_pred HHHHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCHHHHHHHHHHHH----HcCCCCHHHHHHHHHHhcCchHHHHHHHHH
Confidence 4455666777777776666 67888887764 4556666666554 33321 0 0 02234578889999999
Q ss_pred hcCCCC--cccccc
Q 009540 463 KYALPS--LPNLIR 474 (532)
Q Consensus 463 kK~l~f--i~Dlia 474 (532)
.||++- |.+.++
T Consensus 113 qKGI~~~lI~~al~ 126 (195)
T PRK14137 113 RRGVEETLIEETLA 126 (195)
T ss_pred HcCCCHHHHHHHHH
Confidence 999985 444443
No 41
>TIGR01353 dGTP_triPase deoxyguanosinetriphosphate triphosphohydrolase, putative. dGTP triphosphohydrolase (dgt) releases inorganic triphosphate, an unusual activity reaction product, from GTP. Its activity has been called limited to the Enterobacteriaceae, although homologous sequences are detected elsewhere. This finding casts doubt on whether the activity is shared in other species. In several of these other species, the homologous gene is found in an apparent operon with dnaG, the DNA primase gene. The enzyme from E. coli was shown to bind coopertatively to single stranded DNA. The biological role of dgt is unknown.
Probab=41.42 E-value=37 Score=36.84 Aligned_cols=57 Identities=23% Similarity=0.131 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHHHhcCCccccC-----cchhHHHHHHHHHHHHh----CC-----------CH-HHHHHHHhhccc
Q 009540 229 REDFVIKAFYEAERAHRGQMRASG-----DPYLLHCVETAMLLAAI----GA-----------NS-TVVAAGLLHDTL 285 (532)
Q Consensus 229 d~~ll~kA~~fA~~aH~GQ~RkSG-----ePYI~HpleVA~ILa~L----g~-----------D~-etIaAALLHDvV 285 (532)
|.++|.....|-.-.+..|.-..+ ..-++|.++||.+-..+ +. +. -+-+|||+||+=
T Consensus 8 D~dRii~s~~frRL~~ktQv~~~~~~d~~~tRltHslev~~i~r~~~~~l~~~~~~~~~~~~~~~~l~~~a~L~HDiG 85 (381)
T TIGR01353 8 DYDRIIHSSAFRRLQDKTQVFPLAENDFVRTRLTHSLEVAQVGRSIANLIGLRYDLELEELGPFERLAETACLAHDIG 85 (381)
T ss_pred hHHHHhCCHHHhhhccCceeCcCCCCCCCcCHhHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHhcCC
Confidence 445566556665556666754332 34579999999877653 33 22 356789999963
No 42
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=40.24 E-value=84 Score=32.05 Aligned_cols=38 Identities=24% Similarity=0.514 Sum_probs=31.5
Q ss_pred HHHHHHHhCC---CHHHHHHHHhhcccccccCCHHHHHHHhcHHH
Q 009540 262 TAMLLAAIGA---NSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGV 303 (532)
Q Consensus 262 VA~ILa~Lg~---D~etIaAALLHDvVEDT~vTlEeIee~FG~eV 303 (532)
|...+..+|. |.|.++ |++++-+.-....|.+.||.+|
T Consensus 17 Vs~~f~~~G~~vIDaD~va----R~vv~PG~p~~~~ive~FG~ei 57 (225)
T KOG3220|consen 17 VSQVFKALGIPVIDADVVA----REVVEPGTPAYRRIVEAFGTEI 57 (225)
T ss_pred HHHHHHHcCCcEecHHHHH----HHHhcCCChHHHHHHHHhCcee
Confidence 4555666664 888877 9999999889999999999999
No 43
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=39.90 E-value=1.7e+02 Score=24.94 Aligned_cols=73 Identities=19% Similarity=0.143 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHhhhHHHHHHhhhChHHHHHHHHHHHHhhcChhhHHHHHHHHHHHH-hHHhHHHHHHHHHHHHHhcCcc
Q 009540 366 PLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECF-DEAMVTSAIEKLEQALKDKNIS 443 (532)
Q Consensus 366 p~ekq~riA~ETl~IYAPLA~RLGI~~iK~ELEDLsFkyL~Pe~Y~~I~~~L~e~~-re~~I~~vi~~L~~~L~~~gI~ 443 (532)
+.+.-..+|..--.=+-+||.+||+.. .|++.+- .-+|+.+......|..=+ |+. -....+.|.++|.+.|..
T Consensus 6 t~~~l~~ia~~iG~~Wk~Lar~LGls~--~dI~~i~--~~~~~~~eq~~~mL~~W~~r~g-~~AT~~~L~~aL~~~~~~ 79 (86)
T cd08318 6 TGEQITVFANKLGEDWKTLAPHLEMKD--KEIRAIE--SDSEDIKMQAKQLLVAWQDREG-SQATPETLITALNAAGLN 79 (86)
T ss_pred CHHHHHHHHHHHhhhHHHHHHHcCCCH--HHHHHHH--hcCCCHHHHHHHHHHHHHHhcC-ccccHHHHHHHHHHcCcH
Confidence 344445566655567788999999975 4555544 446777777777776433 322 133567788888888765
No 44
>COG1578 Uncharacterized conserved protein [Function unknown]
Probab=38.89 E-value=2.1e+02 Score=30.31 Aligned_cols=110 Identities=20% Similarity=0.147 Sum_probs=69.1
Q ss_pred hhHhhccccCCCCHHHHHHHHHHhhhHHHHHHhhhChHHHHHHHHHHHHhhc-----ChhhHHHHHHHHHHHH-------
Q 009540 354 DRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHL-----NPDQHTELSSKLVECF------- 421 (532)
Q Consensus 354 DRLhNMRtL~~lp~ekq~riA~ETl~IYAPLA~RLGI~~iK~ELEDLsFkyL-----~Pe~Y~~I~~~L~e~~------- 421 (532)
-+.+|.-.+...++++|.++.+|++.+.+- .-|..++-..+--+.||++ +++-|++.+++.++..
T Consensus 13 ~q~~~~~~~~t~ded~~~~~~~~~~~lls~---~y~~~~~~a~~~t~ihr~v~k~~g~eDPyke~K~r~NeiA~~vl~~v 89 (285)
T COG1578 13 RQAVNAVKLATDDEDLRSRIMSEALKLLSE---EYGESAVPAIAGTLIHREVYKILGNEDPYKEYKRRANEIALKVLPKV 89 (285)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHh---hhCcCCCcHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 333444444456789999999999988654 4555555555555555544 4677887777776653
Q ss_pred hH---HhHHHHHHHHHHHHHhcCcccccccc-cccchHHHHHHHHhcCCC
Q 009540 422 DE---AMVTSAIEKLEQALKDKNISFLVLCG-RHKSLYSIHCKMLKYALP 467 (532)
Q Consensus 422 re---~~I~~vi~~L~~~L~~~gI~~~~V~G-R~KhiYSIy~KM~kK~l~ 467 (532)
|+ .--..+...++-+..-+-|.+. |.| +++-+----+||....+.
T Consensus 90 r~~~~~~~~dl~~Avk~ai~GN~iDfg-v~G~~~~~lee~~~~~~~~~l~ 138 (285)
T COG1578 90 RENIEDTPEDLKTAVKLAIVGNVIDFG-VLGFSPFDLEEEVEKLLDAELY 138 (285)
T ss_pred HhcccCChHHHHHHHHHHHHhcceeec-cccCCHhHHHHHHHHhhcCccc
Confidence 22 1112233333444445567886 998 888888888888877664
No 45
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=38.88 E-value=33 Score=36.23 Aligned_cols=35 Identities=29% Similarity=0.410 Sum_probs=25.2
Q ss_pred cchhHHHHHHHHHHHH----hCCCH-HHHHHHHhhccccc
Q 009540 253 DPYLLHCVETAMLLAA----IGANS-TVVAAGLLHDTLDD 287 (532)
Q Consensus 253 ePYI~HpleVA~ILa~----Lg~D~-etIaAALLHDvVED 287 (532)
++...|.+.||.+... +|+|+ +.-.||||||+=..
T Consensus 195 ~~~~~HSl~VA~~A~~LA~~~g~d~~~a~~AGLLHDIGK~ 234 (342)
T PRK07152 195 EYRYKHCLRVAQLAAELAKKNNLDPKKAYYAGLYHDITKE 234 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHhhcc
Confidence 4467899999876543 56664 56689999997653
No 46
>COG2316 Predicted hydrolase (HD superfamily) [General function prediction only]
Probab=37.24 E-value=59 Score=32.16 Aligned_cols=63 Identities=16% Similarity=0.338 Sum_probs=41.3
Q ss_pred CcchhHHHHHHHHHHH----HhCCCHHH-HHHHHhhccccc---------ccCCHHHHHHH-hcHHHHHHHHHhhccc
Q 009540 252 GDPYLLHCVETAMLLA----AIGANSTV-VAAGLLHDTLDD---------AFLSYDYIFRT-FGAGVADLVEGVSKLS 314 (532)
Q Consensus 252 GePYI~HpleVA~ILa----~Lg~D~et-IaAALLHDvVED---------T~vTlEeIee~-FG~eVA~LVegVTKls 314 (532)
.+..+-||++|+..+. ++|-|++. -.+|||||.=-+ .-.+.+-|++. -.++|++.|.+-....
T Consensus 45 ~e~L~kHcla~eavMr~lARe~gEDEEkw~~~GlLHD~DYe~tqgdpEeHgl~g~eiL~~edv~eeil~ai~~H~~~~ 122 (212)
T COG2316 45 SESLQKHCLAVEAVMRWLAREWGEDEEKWAVTGLLHDFDYELTQGDPEEHGLWGVEILREEDVSEEILDAIMGHAAYT 122 (212)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhhhccHHhhcCChhhcCccceehHhhcCCCHHHHHHHHHhhhhh
Confidence 3567889998876554 57888775 468999996322 12344445544 6788888887754443
No 47
>PRK05910 type III secretion system protein; Validated
Probab=37.23 E-value=41 Score=38.67 Aligned_cols=69 Identities=13% Similarity=0.040 Sum_probs=50.5
Q ss_pred HHHHHHH---hhccCchhhHhHHhhhHhhccccCCCCHHHHHHHHHHhhhHHHHHHhhhChHHHHHHHHHHH
Q 009540 333 DRLHTMF---LAMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLC 401 (532)
Q Consensus 333 E~lRKML---LAmaDiRVVLIKLADRLhNMRtL~~lp~ekq~riA~ETl~IYAPLA~RLGI~~iK~ELEDLs 401 (532)
+-+|++| +.+.|.|.++=-|||.-..-+....+.+.-|+++++..-+-|++--+.|-...+..++|+.=
T Consensus 431 ~VLq~LL~E~VsIRdl~tIlEaLad~~~~tkd~~~LtE~VR~~L~r~I~~~~~~~~g~L~vitL~p~~E~~l 502 (584)
T PRK05910 431 FLLRALVRERVSLHLFPKILEAIAVYGSQGKSSEELVEKVRKYLGKQIGRSLWNRQDTLEVITIDSHVEQFI 502 (584)
T ss_pred HHHHHHHhcCCccccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEEeCHHHHHHH
Confidence 4566655 23448889999999998888877777777788888876666666445577778888888764
No 48
>COG0232 Dgt dGTP triphosphohydrolase [Nucleotide transport and metabolism]
Probab=35.69 E-value=54 Score=36.23 Aligned_cols=57 Identities=26% Similarity=0.279 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHHHHhcCCccc--cCcc---hhHHHHHHHHHHH----HhCCC-----HHHH-HHHHhhccc
Q 009540 229 REDFVIKAFYEAERAHRGQMRA--SGDP---YLLHCVETAMLLA----AIGAN-----STVV-AAGLLHDTL 285 (532)
Q Consensus 229 d~~ll~kA~~fA~~aH~GQ~Rk--SGeP---YI~HpleVA~ILa----~Lg~D-----~etI-aAALLHDvV 285 (532)
|..+|..--.|=.-.++.|.-. .|.- -++|.+|||+|-. .++.+ ++.+ +|||.||+=
T Consensus 38 Dr~RIihSaAfRRLq~KTQVf~~~~~D~~RTRLTHSLEVAQIgRsia~~l~~~~~~~~~dL~E~a~LaHDiG 109 (412)
T COG0232 38 DRDRIIHSAAFRRLQDKTQVFPLHEGDFYRTRLTHSLEVAQIGRSIARELGLDLDLPFEDLVETACLAHDIG 109 (412)
T ss_pred cchhhhhhHHHHhhcccceecccccCCcccccchhhHHHHHHHHHHHHHhccccCCChHHHHHHHHHHhcCC
Confidence 4455555555555567777643 2333 4799999999766 46777 6544 578999963
No 49
>TIGR01399 hrcV type III secretion protein, HrcV family. Members of this family are closely homologous to the flagellar biosynthesis protein FlhA (TIGR01398) and should all participate in type III secretion systems. Examples include InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc. Type III secretion systems resemble flagellar biogenesis systems, and may share the property of translocating special classes of peptides through the membrane.
Probab=35.34 E-value=1.5e+02 Score=35.00 Aligned_cols=127 Identities=17% Similarity=0.178 Sum_probs=78.1
Q ss_pred HHHHHHhCC---CHHHHHHHHhhcccccc---cCCHHHHHH---HhcHHHHHHHHHhhcccccchHHhhccccchHHHHH
Q 009540 263 AMLLAAIGA---NSTVVAAGLLHDTLDDA---FLSYDYIFR---TFGAGVADLVEGVSKLSQLSKLARENNTASKTVEAD 333 (532)
Q Consensus 263 A~ILa~Lg~---D~etIaAALLHDvVEDT---~vTlEeIee---~FG~eVA~LVegVTKls~l~~~~r~~~~~~~~~qAE 333 (532)
...+...|. |+.++++.-|..++... -++.+|+++ ..+++=-.||+.+.+.-.+.. -.+
T Consensus 455 ~~~a~~~Gytvvd~~svi~thl~e~i~~~a~ellgrqe~~~Lld~l~~~~p~Lv~Elp~~~~l~~------------i~~ 522 (677)
T TIGR01399 455 AEKLQGAGLGYFSDSQVITHRLKATLLRNAQEFIGIQETRYLLDQMEREYPELVKEVQRVLPLQR------------IAE 522 (677)
T ss_pred HHHHHHcCCeEEcHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhccCCHHH------------HHH
Confidence 344445553 88888888888877543 244443332 234444455555522222211 124
Q ss_pred HHHHHHh---hccCchhhHhHHhhhHhhccccCCCCHHHHHHHHHHhhhHHHHHHhhhChHHHHHHHHHHH
Q 009540 334 RLHTMFL---AMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLC 401 (532)
Q Consensus 334 ~lRKMLL---AmaDiRVVLIKLADRLhNMRtL~~lp~ekq~riA~ETl~IYAPLA~RLGI~~iK~ELEDLs 401 (532)
-+|++|- .+.|.+.++=-|||.-..-+....+.+.-|+++++..-.-|++-.+.|-+..+.-|+|+.=
T Consensus 523 VLq~LL~E~VsIRdl~~IlEtLad~~~~~~d~~~LtE~VR~~L~r~I~~~~~~~~~~l~vi~l~p~~E~~l 593 (677)
T TIGR01399 523 VLQRLVSEQVSIRNLRLILETLIEWAQREKDVVMLTEYVRIALKRYICHRYANGGRQLSAVLIDPEIEELI 593 (677)
T ss_pred HHHHHHhCCCccccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHhCCCCeeEEEEeCHHHHHHH
Confidence 5676653 3348889988999988777776667666788888866666655445576777777777764
No 50
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=33.68 E-value=4.1e+02 Score=30.28 Aligned_cols=142 Identities=11% Similarity=0.194 Sum_probs=79.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcccccccCCHHHHHHHhcHHHHHHHHHhhcccccchHHhhccccch-----HHHHHH
Q 009540 260 VETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASK-----TVEADR 334 (532)
Q Consensus 260 leVA~ILa~Lg~D~etIaAALLHDvVEDT~vTlEeIee~FG~eVA~LVegVTKls~l~~~~r~~~~~~~-----~~qAE~ 334 (532)
++...+|..+..+ ..-|.+.+++-|--+.++...|...+.+|-+|..++..-.+.-. ...... ..+.+.
T Consensus 190 ~~A~eil~~l~~~-----~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~-~~~i~~~i~~i~~~l~~ 263 (560)
T PF06160_consen 190 LEAREILEKLKEE-----TDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGYYLE-HLDIEEEIEQIEEQLEE 263 (560)
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCCC-CCCHHHHHHHHHHHHHH
Confidence 4445555544333 33567888888888889999999999999999888764332100 000000 011222
Q ss_pred HHHHHhh--ccCchhhHhHHhhhHhhccccCCCCHHHHHHHHHHhh-hHHHHHHhhh-ChHHHHHHHHHHHHhhcChh
Q 009540 335 LHTMFLA--MADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETL-EIFVPLANRL-GISTWKVQLENLCFKHLNPD 408 (532)
Q Consensus 335 lRKMLLA--maDiRVVLIKLADRLhNMRtL~~lp~ekq~riA~ETl-~IYAPLA~RL-GI~~iK~ELEDLsFkyL~Pe 408 (532)
..+.|-. +.+++..+-.+.++++-|-.+-.- +.+.+....+.+ .++.=|.|-- ....++.|++-+.-.|.-.+
T Consensus 264 ~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~-E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~ 340 (560)
T PF06160_consen 264 ALALLKNLELDEVEEENEEIEERIDQLYDILEK-EVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNH 340 (560)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 2222211 235778888889998888643211 112223333222 3333333322 23488899999998887766
No 51
>PRK15337 type III secretion system protein InvA; Provisional
Probab=31.79 E-value=1.8e+02 Score=34.27 Aligned_cols=126 Identities=14% Similarity=0.133 Sum_probs=79.0
Q ss_pred HHHHHHhCC---CHHHHHHHHhhcccccc---cCCHHHHHH---HhcHHHHHHHHHhhcccccchHHhhccccchHHHHH
Q 009540 263 AMLLAAIGA---NSTVVAAGLLHDTLDDA---FLSYDYIFR---TFGAGVADLVEGVSKLSQLSKLARENNTASKTVEAD 333 (532)
Q Consensus 263 A~ILa~Lg~---D~etIaAALLHDvVEDT---~vTlEeIee---~FG~eVA~LVegVTKls~l~~~~r~~~~~~~~~qAE 333 (532)
...+...|. |+.++++.=|..++... -++.+|+++ ...++--.+|+.+.+.-.+.. -.+
T Consensus 465 ~~~a~~~Gytvvd~~svi~tHl~evi~~~a~ellg~qev~~Lld~l~~~~p~Lv~elp~~l~l~~------------i~~ 532 (686)
T PRK15337 465 TEKLAKLGYVLRSAIDELYHCLSVLLLHNINEFFGIQETKHLLDQLEKKYPDLLKEVYRHATVQR------------ISE 532 (686)
T ss_pred HHHHHHCCCEEECHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHCHHHHHHHhccCCHHH------------HHH
Confidence 333444453 78888888888777543 244443333 234444555665533222221 124
Q ss_pred HHHHHH---hhccCchhhHhHHhhhHhhccccCCCCHHHHHHHHHHhhhHHHHHHhhhChHHHHHHHHHHH
Q 009540 334 RLHTMF---LAMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLC 401 (532)
Q Consensus 334 ~lRKML---LAmaDiRVVLIKLADRLhNMRtL~~lp~ekq~riA~ETl~IYAPLA~RLGI~~iK~ELEDLs 401 (532)
-+|++| +.+.|.+.++=-|||.-..-+....+.+.-|+++++..-.-|+ -.+.|-+..+..++|++=
T Consensus 533 VLq~LL~E~VsIRdl~~IlE~l~d~~~~~kd~~~LtE~VR~~L~r~I~~~~~-~~g~L~vi~L~~~~E~~l 602 (686)
T PRK15337 533 VLQRLLSERISIRNMKLIMEALALWAPREKDVIMLVEHVRGALARYICHKFA-AGGELRAVVLSAEVEDAI 602 (686)
T ss_pred HHHHHHhcCCccccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhc-cCCceEEEEeCHHHHHHH
Confidence 566655 2344888998899998877777767767778888887777777 456688888888888754
No 52
>KOG2905 consensus Transcription initiation factor IIF, small subunit (RAP30) [Transcription]
Probab=31.25 E-value=52 Score=34.00 Aligned_cols=41 Identities=17% Similarity=0.173 Sum_probs=35.1
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHHHh-HHhHHHHHHHHH
Q 009540 394 KVQLENLCFKHLNPDQHTELSSKLVECFD-EAMVTSAIEKLE 434 (532)
Q Consensus 394 K~ELEDLsFkyL~Pe~Y~~I~~~L~e~~r-e~~I~~vi~~L~ 434 (532)
|.|++|+-|+-.+-..|..|+.+.+.+.+ ++||.+++..|.
T Consensus 184 k~evld~lFk~FEk~~ywtlK~Lv~~t~QP~~fLKEiL~~ic 225 (254)
T KOG2905|consen 184 KNEVLDMLFKAFEKYQYWTLKDLVEITKQPEAFLKEILKDIC 225 (254)
T ss_pred HHHHHHHHHHHhhcCccccHHHHHHHhcCHHHHHHHHHHHHH
Confidence 79999999999999999999999888864 788777776664
No 53
>PRK05318 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=31.06 E-value=56 Score=36.10 Aligned_cols=57 Identities=16% Similarity=0.177 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHHHhcCCccccC-----cchhHHHHHHHHHHHH----h-C---------C-CHHHH-HHHHhhccc
Q 009540 229 REDFVIKAFYEAERAHRGQMRASG-----DPYLLHCVETAMLLAA----I-G---------A-NSTVV-AAGLLHDTL 285 (532)
Q Consensus 229 d~~ll~kA~~fA~~aH~GQ~RkSG-----ePYI~HpleVA~ILa~----L-g---------~-D~etI-aAALLHDvV 285 (532)
|.++|...-.|=.-.+..|.-..+ ..-++|.++||.+-.. + + . +.+.+ +|||+||+=
T Consensus 28 D~dRii~s~~frRL~~ktQV~~~~~~d~~~tRltHslev~~i~r~~~~~~~~~~~~~~~~~~~~~~l~~a~~L~HDiG 105 (432)
T PRK05318 28 DRARILHSAAFRRLQAKTQVLGVGENDFYRTRLTHSLEVAQIGTGIVAQLKKEKQPELKPLLPSDSLIESLCLAHDIG 105 (432)
T ss_pred HHHHHhCCHHHhhhcccceeCCCCCCCCCcChhHHHHHHHHHHHHHHHHHhhccccccccccccHHHHHHHHHHhcCC
Confidence 455666666665566777732211 2347999999987764 3 1 2 34534 889999963
No 54
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=29.91 E-value=1.3e+02 Score=29.45 Aligned_cols=102 Identities=14% Similarity=0.116 Sum_probs=61.4
Q ss_pred HHHHHHHHhhcChhhH--HHHHHHHHHHH-hHHhHHHHHHHHHHH-------HHhcCcccccccccccchHHHHHHHHhc
Q 009540 395 VQLENLCFKHLNPDQH--TELSSKLVECF-DEAMVTSAIEKLEQA-------LKDKNISFLVLCGRHKSLYSIHCKMLKY 464 (532)
Q Consensus 395 ~ELEDLsFkyL~Pe~Y--~~I~~~L~e~~-re~~I~~vi~~L~~~-------L~~~gI~~~~V~GR~KhiYSIy~KM~kK 464 (532)
....++|+++|---.+ ++|..+|.++. -+..|++|++.|.+. ..+.-|... +... |...-|-+|++.|
T Consensus 20 ~~~~~~Al~~Ls~R~rse~ELr~kL~k~~~~~~~Ie~Vi~~l~~~~~ldD~~fAe~~i~~r-~~~g-~G~~rl~qeL~qk 97 (174)
T COG2137 20 AKGLNRALRLLSRRDRSEKELRRKLAKKEFSEEIIEEVIDRLAEEGYLDDTRFAEAYIRSR-SRKG-KGPARLKQELKQK 97 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCcccHHHHHHHHHHHH-Hhcc-cChHHHHHHHHHc
Confidence 4456778888766555 57788887775 355677777766542 333334432 3333 8899999999999
Q ss_pred CCCCccccccceEEecCCcchhhhhhhhhhhhhhhhhhccCccc
Q 009540 465 ALPSLPNLIRESFVTEYSSLSHACFQKFQLLTIHGIGHILWKIL 508 (532)
Q Consensus 465 ~l~fi~Dlia~Riiv~~~~~~~~CY~a~~~~tvLGiVH~lWkPI 508 (532)
|++- ++|.- +.-.. .....|..+ .-++...|+--
T Consensus 98 Gi~~--~~Ie~-aL~~~-~~~~~~~~a------~~~~~kk~~~~ 131 (174)
T COG2137 98 GIDD--EIIEE-ALELI-DEEDEQERA------RKVLRKKFKRE 131 (174)
T ss_pred CCCH--HHHHH-HHhcc-chHHHHHHH------HHHHHHHhCcc
Confidence 9875 22221 11111 123556665 66677766644
No 55
>TIGR01398 FlhA flagellar biosynthesis protein FlhA. This model describes flagellar biosynthesis protein FlhA, one of a large number of genes associated with the biosynthesis of functional bacterial flagella. Homologs of many such proteins, including FlhA, function in type III protein secretion systems. A separate model describes InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc., all of which score below the noise cutoff for this model.
Probab=29.52 E-value=81 Score=37.01 Aligned_cols=118 Identities=19% Similarity=0.210 Sum_probs=71.5
Q ss_pred CHHHHHHHHhhcccccc---cCCHHHHHH---HhcHHHHHHHHHhhc-ccccchHHhhccccchHHHHHHHHHHH---hh
Q 009540 272 NSTVVAAGLLHDTLDDA---FLSYDYIFR---TFGAGVADLVEGVSK-LSQLSKLARENNTASKTVEADRLHTMF---LA 341 (532)
Q Consensus 272 D~etIaAALLHDvVEDT---~vTlEeIee---~FG~eVA~LVegVTK-ls~l~~~~r~~~~~~~~~qAE~lRKML---LA 341 (532)
|+.++++.=|..++... -++.+|+++ ...++=-.+|+.+.. .-.+. .-.+-+|++| +.
T Consensus 467 d~~~vi~tHL~evi~~~a~ellgrqevq~Lld~l~~~~p~lveel~p~~~~l~------------~l~~VLq~LL~E~Vs 534 (678)
T TIGR01398 467 DPATVLATHLSEVIKNNAAELLTRQEVQNLLDRLKEEYPKLVEELIPDKVPLG------------TIQKVLQLLLRERVS 534 (678)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHChHHHHHhccCCCCHH------------HHHHHHHHHHhcCCc
Confidence 77888877777777543 233333322 233333344444432 11111 1124566655 23
Q ss_pred ccCchhhHhHHhhhHhhccccCCCCHHHHHHHHHHhhhHHHHHHhhhChHHHHHHHHHHH
Q 009540 342 MADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLC 401 (532)
Q Consensus 342 maDiRVVLIKLADRLhNMRtL~~lp~ekq~riA~ETl~IYAPLA~RLGI~~iK~ELEDLs 401 (532)
+.|.+.++=-|||.-..-+....+.+.-|+++++..-+-|++--+.|-...+..++|++=
T Consensus 535 IRdl~tIlE~l~d~~~~~kd~~~LtE~VR~~L~r~I~~~~~~~~~~L~vi~l~p~~E~~l 594 (678)
T TIGR01398 535 IRNLPTILETLADYAPITKDPDLLVEHVRQRLGRQITQQYLDEDGVLPVITLDPDLEAAL 594 (678)
T ss_pred cccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHhCCCCeeEEEEeCHHHHHHH
Confidence 448888888889887777766667667788888876666666555677888888888764
No 56
>PRK12720 secretion system apparatus protein SsaV; Provisional
Probab=29.50 E-value=2e+02 Score=33.81 Aligned_cols=126 Identities=16% Similarity=0.148 Sum_probs=76.7
Q ss_pred HHHHHhCC---CHHHHHHHHhhcccccc---cCCHHHHHH---HhcHHHHHHHHHhhcccccchHHhhccccchHHHHHH
Q 009540 264 MLLAAIGA---NSTVVAAGLLHDTLDDA---FLSYDYIFR---TFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADR 334 (532)
Q Consensus 264 ~ILa~Lg~---D~etIaAALLHDvVEDT---~vTlEeIee---~FG~eVA~LVegVTKls~l~~~~r~~~~~~~~~qAE~ 334 (532)
..+...|. |+.++++.-|.+++... -++.+|+++ ...++--.||+.+.+.-.+. .-.+-
T Consensus 452 ~~a~~~Gytvvd~~~viaTHL~evir~~a~ellg~qev~~Lld~l~~~~p~Lv~el~~~l~l~------------~i~~V 519 (675)
T PRK12720 452 EQAQGFGLDVFAGSQRISALLKCVLLRYMGEFIGVQETRYLMDAMEKRYGELVKELQRQLPVG------------KIAEI 519 (675)
T ss_pred HHHHHCCCEEEcHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhccCCHH------------HHHHH
Confidence 33444453 78888888777777532 234333332 23344445555553322221 12345
Q ss_pred HHHHH---hhccCchhhHhHHhhhHhhccccCCCCHHHHHHHHHHhhhHHHHHHhhhChHHHHHHHHHHH
Q 009540 335 LHTMF---LAMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLC 401 (532)
Q Consensus 335 lRKML---LAmaDiRVVLIKLADRLhNMRtL~~lp~ekq~riA~ETl~IYAPLA~RLGI~~iK~ELEDLs 401 (532)
+|++| +.+.|.+.++=-|||.-..-+....+.+.-|+++++..-.-|+.-.+.|-...+..++|+.=
T Consensus 520 Lq~LL~E~VsIRdl~tIlE~l~d~~~~~kd~~~LtE~VR~~L~r~I~~~~~~~~~~l~vi~l~p~~E~~l 589 (675)
T PRK12720 520 LQRLVSERVSIRDLRTIFGTLVEWAPREKDVVMLTEYVRIALRRHILRRFNHEGKWLPVLRIGEGIENLI 589 (675)
T ss_pred HHHHHhcCCccccHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeEEEEeCHHHHHHH
Confidence 66665 23448888988899987776666666666788888876666666555677777777777654
No 57
>COG0751 GlyS Glycyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=29.23 E-value=1e+03 Score=28.30 Aligned_cols=107 Identities=21% Similarity=0.213 Sum_probs=57.9
Q ss_pred chhhHhHHhhhHhhcccc---CC-----CCHHHHHHHHHHhhhHHHHHHhhhChHHHHHHHHHHHHhhcChhhHHHHHHH
Q 009540 345 ARAVLIKLADRLHNMMTL---DA-----LPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSK 416 (532)
Q Consensus 345 iRVVLIKLADRLhNMRtL---~~-----lp~ekq~riA~ETl~IYAPLA~RLGI~~iK~ELEDLsFkyL~Pe~Y~~I~~~ 416 (532)
+-..+|-|||||+++-.+ .. -+|---+|-|...+.|- +.+.|.|. |++|--+.. ..|.....+
T Consensus 448 ~~g~~valADKLDTLvg~F~iG~iPtGSkDPyALRRaAlGiirIi--~~~~l~l~-----l~~ll~~~~--~~~~~~~~~ 518 (691)
T COG0751 448 PVGAVVALADKLDTLVGFFGIGLIPTGSKDPYALRRAALGILRII--LEKNLDLD-----LEELLDKAV--ASFKSKLTN 518 (691)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCcCCCCCcHHHHHHHhHHHHHH--HHhCCCCC-----HHHHHHHHH--HHhhhhccc
Confidence 457899999999999752 22 23444556666666554 23433332 222211111 222221111
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHhcCcccc----cccccccchHHHHHHHH
Q 009540 417 LVECFDEAMVTSAIEKLEQALKDKNISFL----VLCGRHKSLYSIHCKML 462 (532)
Q Consensus 417 L~e~~re~~I~~vi~~L~~~L~~~gI~~~----~V~GR~KhiYSIy~KM~ 462 (532)
...-++.++=+.++|+..|++.|+.++ ++..+++.++.|-+|.+
T Consensus 519 --~~~~~~l~~F~~~Rl~~~l~d~g~~~dii~AVL~~~~~~l~~i~~r~~ 566 (691)
T COG0751 519 --AKVLEELLDFFLGRLRTYLQDEGYRKDIIDAVLALNPTDLLDIIARAE 566 (691)
T ss_pred --cchHHHHHHHHHHHHHHHHHccCCCHHHHHHHHcCCCCCHHHHHHHHH
Confidence 111234455566777777777776532 36677777888877775
No 58
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=29.00 E-value=3.6e+02 Score=24.08 Aligned_cols=75 Identities=17% Similarity=0.274 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhhhHHHHHHhhhC-----hHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhcC
Q 009540 367 LCKRQRFAKETLEIFVPLANRLG-----ISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKN 441 (532)
Q Consensus 367 ~ekq~riA~ETl~IYAPLA~RLG-----I~~iK~ELEDLsFkyL~Pe~Y~~I~~~L~e~~re~~I~~vi~~L~~~L~~~g 441 (532)
++..+.+|...=.=|-.+|.+|| +.. .+++.+.-+|-.-..|..+-+.|..=+..+--...+..|-++|.+.+
T Consensus 2 ~~~~q~~~~nvGr~WK~laR~Lg~~cral~d--~~ID~I~~~y~r~gL~EqvyQ~L~~W~~~eg~~Atv~~Lv~AL~~c~ 79 (90)
T cd08780 2 PADQQHFAKSVGKKWKPVGRSLQKNCRALRD--PAIDNLAYEYDREGLYEQAYQLLRRFIQSEGKKATLQRLVQALEENG 79 (90)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHcccccccch--hHHHHHHhhcccccHHHHHHHHHHHHHHhccccchHHHHHHHHHHcc
Confidence 44566666666667788888999 654 46677777665544555555444432211111134455566666666
Q ss_pred cc
Q 009540 442 IS 443 (532)
Q Consensus 442 I~ 443 (532)
..
T Consensus 80 l~ 81 (90)
T cd08780 80 LT 81 (90)
T ss_pred ch
Confidence 54
No 59
>PF04753 Corona_NS2: Coronavirus non-structural protein NS2; InterPro: IPR006841 This is a family of Coronavirus nonstructural protein NS2. Phosphoamino acid analysis confirmed the phosphorylated nature of NS2 and identified serine and threonine as its phosphorylated amino acid residues []. It was also demonstrated that the ns2 gene product is not essential for Murine hepatitis virus replication in transformed murine cells [].
Probab=27.07 E-value=33 Score=30.88 Aligned_cols=11 Identities=45% Similarity=0.972 Sum_probs=9.1
Q ss_pred HHHHHHHHhhc
Q 009540 395 VQLENLCFKHL 405 (532)
Q Consensus 395 ~ELEDLsFkyL 405 (532)
.||||+||||-
T Consensus 20 t~LED~CfkfN 30 (109)
T PF04753_consen 20 TELEDFCFKFN 30 (109)
T ss_pred chHHHHHHHhc
Confidence 58999999854
No 60
>PRK12792 flhA flagellar biosynthesis protein FlhA; Reviewed
Probab=26.96 E-value=1.7e+02 Score=34.63 Aligned_cols=119 Identities=12% Similarity=0.137 Sum_probs=75.8
Q ss_pred CCHHHHHHHHhhcccccc---cCCHHHHHHH---hcHHHHHHHHHh-hcccccchHHhhccccchHHHHHHHHHHH---h
Q 009540 271 ANSTVVAAGLLHDTLDDA---FLSYDYIFRT---FGAGVADLVEGV-SKLSQLSKLARENNTASKTVEADRLHTMF---L 340 (532)
Q Consensus 271 ~D~etIaAALLHDvVEDT---~vTlEeIee~---FG~eVA~LVegV-TKls~l~~~~r~~~~~~~~~qAE~lRKML---L 340 (532)
.|+.++++.=|.+++... -++.+|+++. +.++=-.||+.+ -+.-.+. .-.+-+|++| +
T Consensus 480 vd~~svi~tHl~evi~~~a~ellgrqev~~Lld~l~~~~p~Lveelvp~~~~l~------------~l~~VLq~LL~E~V 547 (694)
T PRK12792 480 VDNASVLLTHLSEVIRNNLPQLLSYKDMRALLDRLDPEYKRLIDDICPSQISYS------------GLQAVLKLLLAERV 547 (694)
T ss_pred EcHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhChHHHHHhcccCCCHH------------HHHHHHHHHHHcCC
Confidence 378888888887777643 2333333221 233333444442 2221111 1124566665 2
Q ss_pred hccCchhhHhHHhhhHhhccccCCCCHHHHHHHHHHhhhHHHHHHhhhChHHHHHHHHHHHH
Q 009540 341 AMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCF 402 (532)
Q Consensus 341 AmaDiRVVLIKLADRLhNMRtL~~lp~ekq~riA~ETl~IYAPLA~RLGI~~iK~ELEDLsF 402 (532)
.+.|.+.++=-|||.-...+....+.+.-|+++++..-.-|++ .++|-.+.+..|+|++=-
T Consensus 548 sIRdl~tIlEtL~d~~~~~~d~~~LtE~VR~~L~r~I~~~~~~-~g~l~vi~L~p~~E~~l~ 608 (694)
T PRK12792 548 SIRNLHLILEAVAEIAPHARRAEQIAEHVRMRIAQQICGDLSD-NGVLKVLRLGNRWDLAFH 608 (694)
T ss_pred ccccHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhcc-CCceEEEEeCHHHHHHHH
Confidence 3448889998999988777776667677799999888888887 778888888888887643
No 61
>PRK14136 recX recombination regulator RecX; Provisional
Probab=26.86 E-value=1.2e+02 Score=32.39 Aligned_cols=71 Identities=14% Similarity=0.156 Sum_probs=38.7
Q ss_pred HHHhhcChhhH--HHHHHHHHHHH-hHHhHHHHHHHHHHHHHhcCcc----cc--cccc--cccchHHHHHHHHhcCCCC
Q 009540 400 LCFKHLNPDQH--TELSSKLVECF-DEAMVTSAIEKLEQALKDKNIS----FL--VLCG--RHKSLYSIHCKMLKYALPS 468 (532)
Q Consensus 400 LsFkyL~Pe~Y--~~I~~~L~e~~-re~~I~~vi~~L~~~L~~~gI~----~~--~V~G--R~KhiYSIy~KM~kK~l~f 468 (532)
.+++||--..| .+|.++|.++. .+..|+.+++.| ++.|.- |. -|.. +.|...-|-++|++|||+-
T Consensus 167 kAL~lLSrReRSe~ELr~KL~kkG~~ee~IE~VIerL----ke~gYLDDeRFAesyVr~R~~kkGp~rIrqELrQKGId~ 242 (309)
T PRK14136 167 RALGYLSRREYSRAELARKLAPYADESDSVEPLLDAL----EREGWLSDARFAESLVHRRASRVGSARIVSELKRHAVGD 242 (309)
T ss_pred HHHHHhhcccccHHHHHHHHHHcCCCHHHHHHHHHHH----HHcCCcCHHHHHHHHHHHHhhchhHHHHHHHHHHcCCCH
Confidence 34555555555 56777776653 344445554444 344431 00 0111 2256778999999999975
Q ss_pred --cccccc
Q 009540 469 --LPNLIR 474 (532)
Q Consensus 469 --i~Dlia 474 (532)
|.+.+.
T Consensus 243 eLIEqALe 250 (309)
T PRK14136 243 ALVESVGA 250 (309)
T ss_pred HHHHHHHH
Confidence 444443
No 62
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.44 E-value=4.4e+02 Score=29.83 Aligned_cols=72 Identities=18% Similarity=0.144 Sum_probs=45.3
Q ss_pred HHHHHHhhcChhhHHHHHH--HHHHHH---hHH-hHHHHHHHHHHHHHhcCcccccccccccchHHHHHHHHhcCCCC
Q 009540 397 LENLCFKHLNPDQHTELSS--KLVECF---DEA-MVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKYALPS 468 (532)
Q Consensus 397 LEDLsFkyL~Pe~Y~~I~~--~L~e~~---re~-~I~~vi~~L~~~L~~~gI~~~~V~GR~KhiYSIy~KM~kK~l~f 468 (532)
|=|.|.|.--.--+..|++ .|++.- +.. .-..|.++|-..++.-+-.+....|+....|.||+.+++||+.|
T Consensus 61 lLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~~~~~~~~~~~~y~~l~~~G~~F 138 (470)
T KOG1087|consen 61 LLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQAFCGPDGYLPDYYQIYDELRRKGVEF 138 (470)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHHHccCCCCcchhHHHHHHHHHHcCCcC
Confidence 4455655555555545543 233321 222 44556666776776654433335688999999999999999999
No 63
>cd08313 Death_TNFR1 Death domain of Tumor Necrosis Factor Receptor 1. Death Domain (DD) found in tumor necrosis factor receptor-1 (TNFR-1). TNFR-1 has many names including TNFRSF1A, CD120a, p55, p60, and TNFR60. It activates two major intracellular signaling pathways that lead to the activation of the transcription factor NF-kB and the induction of cell death. Upon binding of its ligand TNF, TNFR-1 trimerizes which leads to the recruitment of an adaptor protein named TNFR-associated death domain protein (TRADD) through a DD/DD interaction. Mutations in the TNFRSF1A gene causes TNFR-associated periodic syndrome (TRAPS), a rare disorder characterized recurrent fever, myalgia, abdominal pain, conjunctivitis and skin eruptions. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation a
Probab=25.73 E-value=1.5e+02 Score=25.49 Aligned_cols=57 Identities=19% Similarity=0.172 Sum_probs=29.7
Q ss_pred HHHhhhChHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHh-HHhHHHHHHHHHHHHHhcCcc
Q 009540 383 PLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFD-EAMVTSAIEKLEQALKDKNIS 443 (532)
Q Consensus 383 PLA~RLGI~~iK~ELEDLsFkyL~Pe~Y~~I~~~L~e~~r-e~~I~~vi~~L~~~L~~~gI~ 443 (532)
++|.+||+..-+-|--....+-+.-..|+-+..|.....+ ++-+ +.|-++|.+.+..
T Consensus 16 ~~~R~LGlse~~Id~ie~~~~~~~Eq~yqmL~~W~~~~g~~~At~----~~L~~aLr~~~l~ 73 (80)
T cd08313 16 EFVRRLGLSDNEIERVELDHRRCRDAQYQMLKVWKERGPRPYATL----QHLLSVLRDMELV 73 (80)
T ss_pred HHHHHcCCCHHHHHHHHHhCCChHHHHHHHHHHHHHhcCCCcchH----HHHHHHHHHcCcH
Confidence 4555999997544433333333334455556666554433 4444 4445555555543
No 64
>PF08336 P4Ha_N: Prolyl 4-Hydroxylase alpha-subunit, N-terminal region; InterPro: IPR013547 The members found in this entry are eukaryotic proteins, and include all three isoforms of the prolyl 4-hydroxylase alpha subunit. This enzyme (1.14.11.2 from EC) is important in the post-translational modification of collagen, as it catalyses the formation of 4-hydroxyproline. In vertebrates, the complete enzyme is an alpha2-beta2 tetramer; the beta-subunit is identical to protein disulphide isomerase [, , , ]. The function of the N-terminal region featured in this family does not seem to be known. ; GO: 0004656 procollagen-proline 4-dioxygenase activity, 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0055114 oxidation-reduction process, 0005783 endoplasmic reticulum
Probab=24.11 E-value=1.6e+02 Score=26.86 Aligned_cols=44 Identities=14% Similarity=0.186 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHHhCCCHHHH
Q 009540 232 FVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVV 276 (532)
Q Consensus 232 ll~kA~~fA~~aH~GQ~RkSGePYI~HpleVA~ILa~Lg~D~etI 276 (532)
.|+..+.-....|.. ...+.+-|+.||+..=.++..+..|...+
T Consensus 33 ~l~~~~~~~~~~~~~-~~~d~e~yl~nPlnaF~LIrRl~~dW~~~ 76 (134)
T PF08336_consen 33 TLKRFLDEMKREHEK-AKSDPEEYLSNPLNAFSLIRRLHQDWPKW 76 (134)
T ss_pred HHHHHHHHHHHHHHH-hhcchhhhhhcHHHHHHHHHHHHHhhhhH
Confidence 345555444444443 22367789999999888888877775544
No 65
>PRK10280 dipeptidyl carboxypeptidase II; Provisional
Probab=23.97 E-value=4.8e+02 Score=30.70 Aligned_cols=118 Identities=11% Similarity=0.126 Sum_probs=64.0
Q ss_pred ccCCHHHHHHHhcHHHHHHHHHhhcccccchHHhhccccchHHHHHHHHHHHhhccCchhhHhHHhhhHhhccccCCCCH
Q 009540 288 AFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPL 367 (532)
Q Consensus 288 T~vTlEeIee~FG~eVA~LVegVTKls~l~~~~r~~~~~~~~~qAE~lRKMLLAmaDiRVVLIKLADRLhNMRtL~~lp~ 367 (532)
..++.+++...|..-++..-..+..+..... . ..+.+.+.++...-..|=+..+.+.+|+... +.
T Consensus 21 ~~i~~e~~~~a~~~~~~~~~~~i~~i~~~~~---------~----~t~~n~i~~ld~~~~~l~~~~~~~~~l~~v~--~~ 85 (681)
T PRK10280 21 DQIADHHYRPAFDEGVRQKRAEIAAIALNPQ---------A----PDFNNTILALEQSGELLTRVTSVFFAMTAAH--TN 85 (681)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHHcCCC---------C----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CC
Confidence 3467888888888777766555555432110 0 0122334444434444455555666666433 34
Q ss_pred HHHHHHHHHhhhHHHHHHhhhChH-HHHHHHHHHH----HhhcChhhHHHHHHHHHHH
Q 009540 368 CKRQRFAKETLEIFVPLANRLGIS-TWKVQLENLC----FKHLNPDQHTELSSKLVEC 420 (532)
Q Consensus 368 ekq~riA~ETl~IYAPLA~RLGI~-~iK~ELEDLs----FkyL~Pe~Y~~I~~~L~e~ 420 (532)
++.+..+.|+.....-.-+.++.. .|-.-|..+. ...|.|++.+-+.+.+..-
T Consensus 86 ~~~r~a~~~~~~~l~~~~~~l~~~~~Ly~~l~~~~~~~~~~~l~~e~~r~l~~~l~dF 143 (681)
T PRK10280 86 DELQRLDEQFSAELAELANDIYLNGELFARVDAVWQQRESLGLDSESIRLVEVIHQRF 143 (681)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHcCccccCCCHHHHHHHHHHHHHH
Confidence 556666666665555555555444 3334444442 2367888877777666543
No 66
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=23.67 E-value=2.2e+02 Score=24.60 Aligned_cols=43 Identities=21% Similarity=0.299 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHhh----cChhhHHHHHHH-HHHHHhHHhHHHHHHHHHH
Q 009540 390 ISTWKVQLENLCFKH----LNPDQHTELSSK-LVECFDEAMVTSAIEKLEQ 435 (532)
Q Consensus 390 I~~iK~ELEDLsFky----L~Pe~Y~~I~~~-L~e~~re~~I~~vi~~L~~ 435 (532)
+..++|.|+||---. -+|+.| .|... |. .|.++|..+.++|.+
T Consensus 48 l~~ie~~L~DL~~aV~ive~np~kF-~l~~~Ei~--~Rr~fv~~~~~~i~~ 95 (97)
T PF09177_consen 48 LQSIEWDLEDLEEAVRIVEKNPSKF-NLSEEEIS--RRRQFVSAIRNQIKQ 95 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHH-T-HHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcccc-CCCHHHHH--HHHHHHHHHHHHHHh
Confidence 458999999997543 478888 34322 22 256677777666653
No 67
>KOG2874 consensus rRNA processing protein [Translation, ribosomal structure and biogenesis; Cell cycle control, cell division, chromosome partitioning]
Probab=23.17 E-value=88 Score=33.20 Aligned_cols=60 Identities=27% Similarity=0.449 Sum_probs=43.9
Q ss_pred HHHHHHhhcChhhHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhcCcccc--cccc--------cccchHHHH-----HHH
Q 009540 397 LENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFL--VLCG--------RHKSLYSIH-----CKM 461 (532)
Q Consensus 397 LEDLsFkyL~Pe~Y~~I~~~L~e~~re~~I~~vi~~L~~~L~~~gI~~~--~V~G--------R~KhiYSIy-----~KM 461 (532)
||.=||..|+| +.||.||.++-..+..+|.+.+|.+. -|.| .+--.|.|- -|+
T Consensus 54 ~EeSSfatlFP------------KYREkYlke~wp~v~raL~e~~i~c~lDL~egsm~V~TtRkT~DPyIiikArdlIKL 121 (356)
T KOG2874|consen 54 LEESSFATLFP------------KYREKYLKECWPLVERALDEHHIKCVLDLVEGSMTVKTTRKTRDPYIIIKARDLIKL 121 (356)
T ss_pred hhhhhHHhhhH------------HHHHHHHHHHHHHHHHHHHhcCcceEEeeccceeEEeecccccCceeeeeHHHHHHH
Confidence 56667888888 56899999999999999999999753 0111 233466664 377
Q ss_pred HhcCCCC
Q 009540 462 LKYALPS 468 (532)
Q Consensus 462 ~kK~l~f 468 (532)
..++++|
T Consensus 122 laRsVp~ 128 (356)
T KOG2874|consen 122 LARSVPF 128 (356)
T ss_pred HHcCCCH
Confidence 8888887
No 68
>COG2733 Predicted membrane protein [Function unknown]
Probab=21.99 E-value=6.2e+02 Score=28.23 Aligned_cols=78 Identities=18% Similarity=0.239 Sum_probs=55.6
Q ss_pred CHHHHHHHHHHhhhHHHHHHhhhChHHHHHHHHHHHHhhc-----ChhhHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhc
Q 009540 366 PLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHL-----NPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDK 440 (532)
Q Consensus 366 p~ekq~riA~ETl~IYAPLA~RLGI~~iK~ELEDLsFkyL-----~Pe~Y~~I~~~L~e~~re~~I~~vi~~L~~~L~~~ 440 (532)
.++..+++++||..+-.-+++.|.=..++.-++-+-.+++ .|-.=.-++..+.+.+.++++++++..|.+.+...
T Consensus 120 ~~en~~~v~~~t~~l~~~~~~lld~~~iq~~ik~~v~~~i~e~~~~~~~~~vL~~l~~d~r~q~l~D~~~~~L~r~~~~~ 199 (415)
T COG2733 120 QPENAQRVSQETLKLLSQLLELLDDDDIQRVIKRAVIRAIAEVYLGPTAGRVLESLTADDRHQALLDKLIDRLIRWLLND 199 (415)
T ss_pred CchhHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhh
Confidence 4667789999999999888888888888877777776664 33333333333333344788888888888888877
Q ss_pred Ccc
Q 009540 441 NIS 443 (532)
Q Consensus 441 gI~ 443 (532)
.++
T Consensus 200 ~v~ 202 (415)
T COG2733 200 KVR 202 (415)
T ss_pred hhH
Confidence 774
No 69
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=21.74 E-value=54 Score=31.70 Aligned_cols=38 Identities=21% Similarity=0.434 Sum_probs=30.1
Q ss_pred HHHHHHHhCC---CHHHHHHHHhhcccccccCCHHHHHHHhcHHH
Q 009540 262 TAMLLAAIGA---NSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGV 303 (532)
Q Consensus 262 VA~ILa~Lg~---D~etIaAALLHDvVEDT~vTlEeIee~FG~eV 303 (532)
|+.+|.++|. |.+.++ |++++....-...|.+.||++|
T Consensus 16 v~~~l~~~G~~vidaD~i~----~~l~~~~~~~~~~l~~~FG~~i 56 (180)
T PF01121_consen 16 VSKILAELGFPVIDADEIA----HELYEPGSEGYKALKERFGEEI 56 (180)
T ss_dssp HHHHHHHTT-EEEEHHHHH----HHCTSCTCHHHHHHHHHHGGGG
T ss_pred HHHHHHHCCCCEECccHHH----HHHhhcCHHHHHHHHHHcCccc
Confidence 5778888885 778876 8888876667789999999877
No 70
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=21.38 E-value=3.9e+02 Score=24.98 Aligned_cols=40 Identities=8% Similarity=-0.061 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhcCcccccccccccchHHHHHHHHhcCCCC
Q 009540 428 SAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKYALPS 468 (532)
Q Consensus 428 ~vi~~L~~~L~~~gI~~~~V~GR~KhiYSIy~KM~kK~l~f 468 (532)
++.+++.+.++.-...+. =...-+.++.+|+.|+++|+.|
T Consensus 100 ~Vk~kil~li~~W~~~f~-~~~~l~~i~~~y~~L~~~G~~F 139 (142)
T cd03569 100 EVRQKILELIQAWALAFR-NKPQLKYVVDTYQILKAEGHKF 139 (142)
T ss_pred HHHHHHHHHHHHHHHHhC-CCcccHHHHHHHHHHHHcCCCC
Confidence 455555555555443332 1123357999999999999988
No 71
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=21.26 E-value=1.1e+03 Score=28.67 Aligned_cols=21 Identities=14% Similarity=0.257 Sum_probs=13.4
Q ss_pred cccCCHHHHHHHhcHHHHHHH
Q 009540 287 DAFLSYDYIFRTFGAGVADLV 307 (532)
Q Consensus 287 DT~vTlEeIee~FG~eVA~LV 307 (532)
+..+|.+++.+.+|..-..++
T Consensus 231 ~~~IT~e~V~allg~~~~~~I 251 (824)
T PRK07764 231 PEGVTYERAVALLGVTDSALI 251 (824)
T ss_pred CCCCCHHHHHHHhcCCCHHHH
Confidence 456888888887775433333
No 72
>PF06744 DUF1215: Protein of unknown function (DUF1215); InterPro: IPR010623 This domain represents a conserved region situated towards the C-terminal end of several hypothetical bacterial proteins of unknown function. A few members resemble the ImcF protein, which has been proposed [] to be involved in Vibrio cholerae cell surface reorganisation that results in increased adherence to epithelial cells line and increased conjugation frequency.
Probab=21.19 E-value=97 Score=28.03 Aligned_cols=51 Identities=25% Similarity=0.444 Sum_probs=34.7
Q ss_pred ccccccCcCcchhhHhhhhhccccccCCCCcccccCCcccccCchhhHHHHH
Q 009540 146 FHTFFKGSSGLFNGFVRNALGSCVDYDSSSFRVHNGDAVLNVGSSAALIDEL 197 (532)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 197 (532)
+..-.-|.+|+++.|+..-|+.-||........+.++.. +.+-+..+++.|
T Consensus 69 Df~~fF~p~G~ld~F~~~~L~~fvd~~~~~w~~~~~~~~-~~~~~~~~L~~~ 119 (125)
T PF06744_consen 69 DFARFFGPGGVLDQFFNQYLKPFVDTSGNPWRWRPGDGQ-GLGLSPAFLAQF 119 (125)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHhCCCCcceeCCCCCc-CCCCCHHHHHHH
Confidence 344445566999999999999999999887776665532 333344444433
No 73
>COG4339 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.02 E-value=3.1e+02 Score=27.36 Aligned_cols=35 Identities=20% Similarity=0.249 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhCCCHH-HHHHHHhhcccccccCCH
Q 009540 258 HCVETAMLLAAIGANST-VVAAGLLHDTLDDAFLSY 292 (532)
Q Consensus 258 HpleVA~ILa~Lg~D~e-tIaAALLHDvVEDT~vTl 292 (532)
-+++.+..+..+--|+. +=.|+|.||+|-||...-
T Consensus 47 a~L~~~~~~r~la~dp~~VElA~WfHD~iYDtqaqD 82 (208)
T COG4339 47 AVLQTIQTLRTLAQDPPGVELAAWFHDVIYDTQAQD 82 (208)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHhhhhccc
Confidence 33444444444444544 447889999999996543
No 74
>PF09824 ArsR: ArsR transcriptional regulator; InterPro: IPR014517 Members of this family of archaeal proteins are conserved transcriptional regulators belonging to the ArsR family.
Probab=20.99 E-value=1.2e+02 Score=29.54 Aligned_cols=55 Identities=16% Similarity=0.193 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhhcccccccCCHHHHHHHhcHHHHHHHHHhhcccccc
Q 009540 259 CVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLS 317 (532)
Q Consensus 259 pleVA~ILa~Lg~D~etIaAALLHDvVEDT~vTlEeIee~FG~eVA~LVegVTKls~l~ 317 (532)
|.+..-+|..++-...- -++|.+-+...|.+||++.||+++.+-+.-+.|..-+.
T Consensus 4 p~eLVPll~~f~s~~~k----kV~~~Ls~~W~T~~El~e~~G~d~~~~L~~LkK~gLiE 58 (160)
T PF09824_consen 4 PVELVPLLQTFNSEVYK----KVYDELSKGWMTEEELEEKYGKDVRESLLILKKGGLIE 58 (160)
T ss_pred HHHHHHHHHHhCCHHHH----HHHHHHHhccCCHHHHHHHHCcCHHHHHHHHHHcCchh
Confidence 45555555554443322 24677778899999999999999998888888765443
No 75
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=20.92 E-value=5e+02 Score=32.91 Aligned_cols=8 Identities=50% Similarity=0.837 Sum_probs=3.1
Q ss_pred cCCCCCCc
Q 009540 126 YSRSSPPI 133 (532)
Q Consensus 126 ~~~~~~~~ 133 (532)
||+.||+-
T Consensus 1571 ysptspsy 1578 (1605)
T KOG0260|consen 1571 YSPTSPSY 1578 (1605)
T ss_pred CCCCCCCc
Confidence 33333333
No 76
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=20.87 E-value=4.4e+02 Score=31.21 Aligned_cols=102 Identities=20% Similarity=0.202 Sum_probs=55.2
Q ss_pred hHHhhhHhhccccCCCC-HHHHHHHHHHhhhHHHHHHhhhChHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhHHhHHH
Q 009540 350 IKLADRLHNMMTLDALP-LCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTS 428 (532)
Q Consensus 350 IKLADRLhNMRtL~~lp-~ekq~riA~ETl~IYAPLA~RLGI~~iK~ELEDLsFkyL~Pe~Y~~I~~~L~e~~re~~I~~ 428 (532)
-+|||++...-. ++ .++++++ .|+.++-.-|.-- +.-|+.|+|-+-.+ -+.-+++++.+++..|+-|+.+
T Consensus 160 ~~Lad~ia~~L~---l~~~~eKQ~L-LE~~d~~~RL~~l--~~lL~~ele~l~l~---~~I~~~v~~~~~~~qr~~~Lre 230 (775)
T TIGR00763 160 GRLADFVAASLQ---LKEKDELQEV-LETVNIEKRLKKA--LELLKKELELLKLQ---NKITKKVEEKMEKTQREYYLRE 230 (775)
T ss_pred HHHHHHHHHhcC---CCcHHHHHHH-HhcCCHHHHHHHH--HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 468888865543 33 3444333 3344443333222 23566777766542 3444455555555667888888
Q ss_pred HHHHHHHHHHhcCcccccccccccchHHHHHHHHhcCCC
Q 009540 429 AIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKYALP 467 (532)
Q Consensus 429 vi~~L~~~L~~~gI~~~~V~GR~KhiYSIy~KM~kK~l~ 467 (532)
-++.|+++|-+.+-. .+.+=.+.+|+.+++++
T Consensus 231 qlk~i~~eLg~~~~~-------~~~~~~~~~k~~~~~~~ 262 (775)
T TIGR00763 231 QLKAIKKELGIEKDD-------KDELEKLKEKLEELKLP 262 (775)
T ss_pred HHHHHHHhhCCCCCc-------hhHHHHHHHHHHhcCCC
Confidence 888888888543211 12233456666665554
No 77
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=20.19 E-value=6.4e+02 Score=28.60 Aligned_cols=93 Identities=10% Similarity=0.174 Sum_probs=56.1
Q ss_pred cccCCHHHHHHHhc----HHHHHHHHHhhcccccchHHhhccccchHHHHHHHHHHHhhccCchhhHhHHhhhHhhcccc
Q 009540 287 DAFLSYDYIFRTFG----AGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTL 362 (532)
Q Consensus 287 DT~vTlEeIee~FG----~eVA~LVegVTKls~l~~~~r~~~~~~~~~qAE~lRKMLLAmaDiRVVLIKLADRLhNMRtL 362 (532)
+..+|.++|++..| ..|.+|++.+.+-.. . ...+.++.++..-.|+..++--|++.+++|..+
T Consensus 241 ~~~It~~~V~~llg~~~~~~if~L~~ai~~~d~-~------------~Al~~l~~L~~~g~~~~~~l~~l~~~~~~l~~~ 307 (507)
T PRK06645 241 DNIISPQVINQMLGLVDSSVIIEFVEYIIHRET-E------------KAINLINKLYGSSVNLEIFIESVSDFIAYLNKV 307 (507)
T ss_pred CCCcCHHHHHHHHCCCCHHHHHHHHHHHHcCCH-H------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 44689999999887 577788888765221 1 112345555433349999999999999998876
Q ss_pred CCCCHHHHHHHHHHhhhHHHHHHhhhChHHH
Q 009540 363 DALPLCKRQRFAKETLEIFVPLANRLGISTW 393 (532)
Q Consensus 363 ~~lp~ekq~riA~ETl~IYAPLA~RLGI~~i 393 (532)
+..+...+. +..+..+-+.-+|..+++..+
T Consensus 308 k~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l 337 (507)
T PRK06645 308 KMLPNYSLP-IYESFNDRTKSILDKISLPHL 337 (507)
T ss_pred Hhccccccc-cchhHHHHHHHHHHhCCHHHH
Confidence 654422111 222223344455555555544
Done!