Query 009542
Match_columns 532
No_of_seqs 323 out of 1221
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 07:33:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009542.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009542hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b4r_A Putative zinc metallopr 99.9 1.8E-24 6.3E-29 211.1 14.1 120 290-451 42-161 (224)
2 2di4_A Zinc protease, cell div 65.0 4 0.00014 40.1 3.4 28 298-325 18-47 (238)
3 3cqb_A Probable protease HTPX 53.0 6 0.00021 33.6 2.0 12 297-308 84-95 (107)
4 2jsd_A Matrix metalloproteinas 48.3 8 0.00028 34.6 2.2 22 297-318 109-130 (160)
5 2xs4_A Karilysin protease; hyd 47.2 8.5 0.00029 34.8 2.2 22 297-318 116-137 (167)
6 2ovx_A Matrix metalloproteinas 45.5 7.9 0.00027 35.0 1.7 22 297-318 112-133 (159)
7 1hy7_A Stromelysin-1, MMP-3; m 44.5 9.9 0.00034 34.7 2.2 22 297-318 114-135 (173)
8 1cge_A Fibroblast collagenase; 41.3 10 0.00034 34.6 1.7 21 297-317 112-132 (168)
9 1hv5_A Stromelysin 3; inhibiti 36.9 13 0.00044 33.7 1.7 21 297-317 114-134 (165)
10 1i76_A MMP-8;, neutrophil coll 36.4 16 0.00054 33.1 2.2 21 297-317 113-133 (163)
11 1slm_A Stromelysin-1; hydrolas 32.6 16 0.00055 35.8 1.7 20 297-316 196-215 (255)
12 3m92_A Protein YCIN; DUF2498, 31.0 56 0.0019 28.3 4.5 66 152-218 25-103 (107)
13 2y6d_A Matrilysin; hydrolase; 30.4 23 0.00077 32.5 2.2 22 297-318 116-137 (174)
14 3c37_A Peptidase, M48 family; 30.3 21 0.00071 34.6 2.0 12 297-308 101-112 (253)
15 1y93_A Macrophage metalloelast 30.1 19 0.00066 32.4 1.7 19 297-315 109-127 (159)
16 2w15_A Zinc metalloproteinase 29.9 19 0.00066 33.3 1.7 17 296-312 136-152 (202)
17 3ayu_A 72 kDa type IV collagen 29.6 20 0.00068 32.7 1.7 20 297-316 115-134 (167)
18 1rm8_A MMP-16, matrix metallop 29.6 24 0.00082 31.9 2.2 22 297-318 118-139 (169)
19 1c7k_A NCNP, zinc endoprotease 28.3 27 0.00091 31.5 2.2 11 298-308 79-89 (132)
20 1atl_A Atrolysin C; metalloend 26.4 26 0.00088 32.5 1.9 17 296-312 136-152 (202)
21 1bud_A Protein (acutolysin A); 26.2 25 0.00085 32.5 1.7 17 296-312 133-149 (197)
22 2cki_A Ulilysin; metalloprotea 26.1 21 0.0007 35.3 1.2 11 298-308 164-174 (262)
23 1qua_A Acutolysin-C, hemorrhag 25.6 26 0.00088 32.4 1.7 17 296-312 135-151 (197)
24 2ddf_A ADAM 17; hydrolase; HET 25.4 27 0.00093 33.5 1.9 17 296-312 182-198 (257)
25 1kuf_A Atrolysin E, metallopro 25.3 26 0.0009 32.6 1.7 17 296-312 138-154 (203)
26 1yp1_A FII; FII hydrolase; 1.9 25.1 27 0.00091 32.4 1.7 17 296-312 135-151 (202)
27 3b8z_A Protein adamts-5; alpha 24.7 27 0.00093 32.6 1.7 16 297-312 142-157 (217)
28 830c_A MMP-13, MMP-13; matrix 23.5 30 0.001 31.8 1.7 22 297-318 114-135 (168)
29 2v4b_A Adamts-1; zymogen, prot 23.2 30 0.001 34.1 1.7 18 296-313 143-160 (300)
30 2rjp_A Adamts-4; metalloprotea 22.1 32 0.0011 34.2 1.7 17 296-312 143-159 (316)
31 3ma2_D Matrix metalloproteinas 21.7 34 0.0012 31.8 1.7 20 298-317 124-143 (181)
32 2rjq_A Adamts-5; metalloprotea 21.5 33 0.0011 34.9 1.7 17 296-312 143-159 (378)
33 4dd8_A Disintegrin and metallo 21.2 42 0.0014 31.3 2.2 16 297-312 134-149 (208)
34 2isb_A Fumarase, FUM-1; NP_069 21.1 73 0.0025 30.5 3.8 60 154-236 20-79 (192)
35 2ero_A VAP-1, vascular apoptos 21.0 40 0.0014 35.3 2.2 20 295-314 145-164 (427)
36 1sat_A Serratia protease; para 20.1 40 0.0014 35.8 2.0 20 298-317 172-191 (471)
No 1
>3b4r_A Putative zinc metalloprotease MJ0392; intramembrane protease, CBS domain, hydrolase, metal-binding, transmembrane; 3.30A {Methanocaldococcus jannaschii}
Probab=99.91 E-value=1.8e-24 Score=211.08 Aligned_cols=120 Identities=30% Similarity=0.444 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccCCccccccceeeccceEEeeccccCCccceeeeeecchhhHHHHHHHHHHHH
Q 009542 290 PGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVG 369 (532)
Q Consensus 290 p~al~Ll~iL~iHElGH~laAr~~Gvk~s~P~FIP~i~LgtFGAvi~~~s~~~~RkalfdIAlAGPLAg~llAlill~iG 369 (532)
.++++++.++++||+||+++||++|+++.. +.+.+||+++++++. +|+++++|++|||++|++++++++.+.
T Consensus 42 ~~~l~l~~~v~~HElgH~~~A~~~G~~~~~------i~l~p~Gg~~~~~~~--~~~~~~~ValAGPl~nl~la~~~~~~~ 113 (224)
T 3b4r_A 42 VLFILLFVSVVLHELGHSYVAKKYGVKIEK------ILLLPIGGVAMMDKI--PKEGELRIGIAGPLVSFIIGIVLLIVS 113 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCC------EEECSSSCBCCCCCC--CSSSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcccc------EEEEEeeeEEEcccC--CccceeeeeeeHHHHHHHHHHHHHHHH
Confidence 778888999999999999999999999985 445558999988763 458999999999999999998876554
Q ss_pred hhcCCCCCCcccccccchhhhhhhhhhHHhhhccccCCCCCccchHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHhhh
Q 009542 370 FIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGR 449 (532)
Q Consensus 370 l~l~~s~~~~~~v~~~~f~~s~L~~~la~l~LG~~l~~~~~v~lhPL~~agwinLvLtafNLLPigpLDGGrIl~Allgr 449 (532)
...+.. . .. ...+.+++|+|+++++|||+|++|||||||+++++++
T Consensus 114 ~~~~~~-------------~--------------------~~-~~~~~~~~~iNl~l~~fNLlPi~PLDGgril~~ll~~ 159 (224)
T 3b4r_A 114 QFFDIN-------------I--------------------NG-YPLLYTLSLLNLMLGGFNLIPAFPMDGGRILRAILSK 159 (224)
T ss_dssp TTCCCE-------------E--------------------TT-EEHHHHHHHHHHHHHHHTTSSSSSSHHHHHHHHHHHH
T ss_pred HHccCc-------------c--------------------hH-HHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHhcc
Confidence 322100 0 00 1234567999999999999999999999999999887
Q ss_pred hH
Q 009542 450 KA 451 (532)
Q Consensus 450 r~ 451 (532)
+.
T Consensus 160 ~~ 161 (224)
T 3b4r_A 160 KY 161 (224)
T ss_dssp HH
T ss_pred cc
Confidence 64
No 2
>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1
Probab=64.99 E-value=4 Score=40.09 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHcC--CccCCcccccc
Q 009542 298 VIGVHELGHILAAKSTG--VELGVPYFVPS 325 (532)
Q Consensus 298 iL~iHElGH~laAr~~G--vk~s~P~FIP~ 325 (532)
++..||.||+++|...+ .++..-..+|.
T Consensus 18 ~vAyHEAGHAlva~~l~~~~pV~KVTIiPR 47 (238)
T 2di4_A 18 KIAIHEAGHALMGLVSDDDDKVHKISIIPR 47 (238)
T ss_dssp HHHHHHHHHHHHHHHCSSCCCCCCEECC--
T ss_pred HHHHHHHHHHHHHHHcCCCCceeEEEEeec
Confidence 46789999999999987 66665566675
No 3
>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633}
Probab=53.01 E-value=6 Score=33.64 Aligned_cols=12 Identities=33% Similarity=0.465 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHH
Q 009542 297 LVIGVHELGHIL 308 (532)
Q Consensus 297 ~iL~iHElGH~l 308 (532)
..++.||+||+.
T Consensus 84 ~aVlaHElgH~~ 95 (107)
T 3cqb_A 84 EAVLAHEVSHIA 95 (107)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 367899999974
No 4
>2jsd_A Matrix metalloproteinase-20; MMP-NNGH, structural genomics, structural proteomics in europe, spine, spine-2, spine2-complexes, hydrolase; HET: NGH; NMR {Homo sapiens}
Probab=48.33 E-value=8 Score=34.57 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHcCCccC
Q 009542 297 LVIGVHELGHILAAKSTGVELG 318 (532)
Q Consensus 297 ~iL~iHElGH~laAr~~Gvk~s 318 (532)
..+++||+||++=-..-..+.+
T Consensus 109 ~~v~~HEiGHaLGL~H~~~~~s 130 (160)
T 2jsd_A 109 FTVAAHEFGHALGLAHSTDPSA 130 (160)
T ss_dssp HHHHHHHHHHHHTCCCCCCTTC
T ss_pred HHHHHHHhHhhhcCCCCCCCCc
Confidence 4678999999986655554443
No 5
>2xs4_A Karilysin protease; hydrolase, bacterial MMP, virulence factor, metalloprotease, dependent, peptidase; 1.70A {Tannerella forsythia} PDB: 2xs3_A
Probab=47.24 E-value=8.5 Score=34.84 Aligned_cols=22 Identities=27% Similarity=0.650 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHcCCccC
Q 009542 297 LVIGVHELGHILAAKSTGVELG 318 (532)
Q Consensus 297 ~iL~iHElGH~laAr~~Gvk~s 318 (532)
..+++||+||++=-..-..+.+
T Consensus 116 ~~v~~HEiGHaLGL~H~~~~~s 137 (167)
T 2xs4_A 116 ITVAAHEIGHLLGIEHSNVSSA 137 (167)
T ss_dssp HHHHHHHHHHHHTBCCCSCTTS
T ss_pred hhhHHHHHHHhhcCCCCCCCCc
Confidence 4678999999986654444433
No 6
>2ovx_A Matrix metalloproteinase-9 (EC 3.4.24.35) (MMP-9) type IV collagenase) (92 kDa gelatinase)...; S1-prime pocket, hydrolase-hydrola inhibitor complex; HET: 4MR; 2.00A {Homo sapiens} SCOP: d.92.1.11 PDB: 2ovz_A* 2ow0_A* 2ow1_A* 2ow2_A* 1gkd_A* 1gkc_A*
Probab=45.46 E-value=7.9 Score=35.01 Aligned_cols=22 Identities=23% Similarity=0.533 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHcCCccC
Q 009542 297 LVIGVHELGHILAAKSTGVELG 318 (532)
Q Consensus 297 ~iL~iHElGH~laAr~~Gvk~s 318 (532)
..+++||+||++=-..-..+.+
T Consensus 112 ~~va~HEiGHaLGL~Hs~~~~~ 133 (159)
T 2ovx_A 112 FLVAAHQFGHALGLDHSSVPEA 133 (159)
T ss_dssp HHHHHHHHHHHTTCCCCSCTTS
T ss_pred hhhhhhhhhhhhcCCCCCCCcc
Confidence 3578999999976554444433
No 7
>1hy7_A Stromelysin-1, MMP-3; mixed alpha beta structure, zinc protease, inhibited, hydrol; HET: MBS; 1.50A {Homo sapiens} SCOP: d.92.1.11 PDB: 1biw_A* 1bm6_A* 1bqo_A* 1b3d_A* 1cqr_A 1d5j_A* 1d7x_A* 1d8f_A* 1d8m_A* 1g05_A* 1g49_A* 1c3i_A* 1sln_A* 1uea_A 2srt_A* 1ums_A* 1umt_A* 2d1o_A* 3oho_A* 1ciz_A* ...
Probab=44.49 E-value=9.9 Score=34.72 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHcCCccC
Q 009542 297 LVIGVHELGHILAAKSTGVELG 318 (532)
Q Consensus 297 ~iL~iHElGH~laAr~~Gvk~s 318 (532)
..+++||+||++=-..-..+.+
T Consensus 114 ~~v~~HEiGHaLGL~H~~~~~s 135 (173)
T 1hy7_A 114 FLVAAHEIGHSLGLFHSANTEA 135 (173)
T ss_dssp HHHHHHHHHHHHTBCCCSCTTS
T ss_pred hhhHHHHHHHhhcCCCCCCCCc
Confidence 4578999999986655444433
No 8
>1cge_A Fibroblast collagenase; hydrolase (metalloprotease); 1.90A {Homo sapiens} SCOP: d.92.1.11 PDB: 2j0t_A 1ayk_A 1hfc_A* 2ayk_A 2tcl_A* 3ayk_A* 4ayk_A* 1cgl_A* 1cgf_A 966c_A* 3shi_A
Probab=41.31 E-value=10 Score=34.59 Aligned_cols=21 Identities=29% Similarity=0.284 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHcCCcc
Q 009542 297 LVIGVHELGHILAAKSTGVEL 317 (532)
Q Consensus 297 ~iL~iHElGH~laAr~~Gvk~ 317 (532)
..+++||+||++=-..-..+.
T Consensus 112 ~~v~~HEiGHaLGL~H~~~~~ 132 (168)
T 1cge_A 112 HRVAAHELGHSLGLSHSTDIG 132 (168)
T ss_dssp HHHHHHHHHHHTTCCCCSCTT
T ss_pred hhhhhhHhHhhhcCCCCCCCC
Confidence 467899999997654444433
No 9
>1hv5_A Stromelysin 3; inhibition, phosphinic inhibitor, hydrolase; HET: CPS RXP; 2.60A {Mus musculus} SCOP: d.92.1.11
Probab=36.88 E-value=13 Score=33.68 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHcCCcc
Q 009542 297 LVIGVHELGHILAAKSTGVEL 317 (532)
Q Consensus 297 ~iL~iHElGH~laAr~~Gvk~ 317 (532)
..+.+||+||++=-..-..+.
T Consensus 114 ~~v~~HEiGHaLGL~H~~~~~ 134 (165)
T 1hv5_A 114 LQVAAHEFGHVLGLQHTTAAK 134 (165)
T ss_dssp HHHHHHHHHHHTTCCCCSCTT
T ss_pred hhhHHHHhHhhhCCCCCCCCC
Confidence 467899999997655444433
No 10
>1i76_A MMP-8;, neutrophil collagenase; hydrolase, complex (metalloprotease/inhibitor); HET: BSI; 1.20A {Homo sapiens} SCOP: d.92.1.11 PDB: 1i73_A* 1jao_A* 1jap_A 1jaq_A* 1jj9_A* 1mmb_A* 1zp5_A* 1zs0_A* 1zvx_A* 3dng_A* 3dpe_A* 3dpf_A* 1kbc_A* 1jan_A* 1bzs_A* 1mnc_A* 2oy2_A 1a86_A* 1jh1_A* 1a85_A ...
Probab=36.38 E-value=16 Score=33.12 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHcCCcc
Q 009542 297 LVIGVHELGHILAAKSTGVEL 317 (532)
Q Consensus 297 ~iL~iHElGH~laAr~~Gvk~ 317 (532)
..+.+||+||.+=-.....+.
T Consensus 113 ~~v~~HE~GHalGl~H~~~~~ 133 (163)
T 1i76_A 113 FLVAAHEFGHSLGLAHSSDPG 133 (163)
T ss_dssp HHHHHHHHHHHHTBCCCSCTT
T ss_pred hhhhHHHhhhhhcCCCCCCCC
Confidence 357899999998665444443
No 11
>1slm_A Stromelysin-1; hydrolase, metalloprotease, fibroblast, collagen degradation; 1.90A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11
Probab=32.57 E-value=16 Score=35.82 Aligned_cols=20 Identities=25% Similarity=0.504 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHcCCc
Q 009542 297 LVIGVHELGHILAAKSTGVE 316 (532)
Q Consensus 297 ~iL~iHElGH~laAr~~Gvk 316 (532)
..+++||+||++=-..-..+
T Consensus 196 ~~va~HEiGHaLGL~Hs~~~ 215 (255)
T 1slm_A 196 FLVAAHEIGHSLGLFHSANT 215 (255)
T ss_dssp HHHHHHHHHHHTTCCCCSCT
T ss_pred hhhhHHHHHHHhcCCCCCCC
Confidence 46789999999765444433
No 12
>3m92_A Protein YCIN; DUF2498, structural genomics, PSI-2, protein structure initi midwest center for structural genomics, MCSG, unknown funct; HET: MSE; 2.05A {Shigella flexneri 2A}
Probab=30.97 E-value=56 Score=28.30 Aligned_cols=66 Identities=17% Similarity=0.333 Sum_probs=44.5
Q ss_pred cccCCCChhHH-----HHhhccccccceeeeccccccCceEEEEeccC-------Cc-hHHHHHHHHHHHHhhhCCceEE
Q 009542 152 DEYIRIPKETI-----DILKDQVFGFDTFFVTNQEPYEGGVLFKGNLR-------GQ-AAKTYEKISTRMKNKFGDQYKL 218 (532)
Q Consensus 152 ~~~~~i~~edl-----~~ik~~~Fg~dtF~~t~~~~~~~gvi~rGnLR-------~~-~e~~y~~l~~~l~~~fGd~y~l 218 (532)
.+.-+|++++| +.||+.===+..-.+|++|-..+..+|||+.= +. ...||. +-+-|+-.+..+|.|
T Consensus 25 ~~~~~I~r~~LL~~AN~iI~eHeDyi~GM~A~~Veqk~~VLVFkGeyFLDe~GLPT~KTTAVFN-MFK~LAh~LS~ky~L 103 (107)
T 3m92_A 25 KETQPIDRETLLKEANKIIREHEDTLAGIEATGVTQRNGVLVFTGDYFLDEQGLPTAKSTAVFN-MFKHLAHVLSEKYHL 103 (107)
T ss_dssp CCCEEECHHHHHHHHHHHHHHHHHHHTTCCEEEEEESSSCEEEEECCCCCTTSCCCHHHHHHHH-HHHHHHHHHTTTEEE
T ss_pred CCCCccCHHHHHHHHHHHHHHhHHHhccccccceeeeCCEEEEecceeecCCCCCCcccHHHHH-HHHHHHHHhChheec
Confidence 45668999998 45554222233467999999999999999932 22 234444 445567777888976
No 13
>2y6d_A Matrilysin; hydrolase; HET: TQJ; 1.60A {Homo sapiens} PDB: 2ddy_A* 1mmq_A* 1mmp_A* 1mmr_A* 2y6c_A*
Probab=30.38 E-value=23 Score=32.53 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHcCCccC
Q 009542 297 LVIGVHELGHILAAKSTGVELG 318 (532)
Q Consensus 297 ~iL~iHElGH~laAr~~Gvk~s 318 (532)
..+.+||+||.+--.....+.+
T Consensus 116 ~~~~~HE~gH~lGl~h~~~~~s 137 (174)
T 2y6d_A 116 LYAATHELGHSLGMGHSSDPNA 137 (174)
T ss_dssp HHHHHHHHHHHHTBCCCSCTTS
T ss_pred eehhhHHhHhhhcCCCCCCCCc
Confidence 3578999999986655444443
No 14
>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics, protein structure initiative, northeast structural genomics consortium; 1.70A {Geobacter sulfurreducens pca}
Probab=30.34 E-value=21 Score=34.56 Aligned_cols=12 Identities=25% Similarity=0.393 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHH
Q 009542 297 LVIGVHELGHIL 308 (532)
Q Consensus 297 ~iL~iHElGH~l 308 (532)
.+++.||+||..
T Consensus 101 aaVLaHElgH~~ 112 (253)
T 3c37_A 101 AGVLAHEINHAV 112 (253)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 368899999984
No 15
>1y93_A Macrophage metalloelastase; matrix metalloproteinase, MMP12, complex (elastase inhibitor), acetohydroxamic acid, hydrola; 1.03A {Homo sapiens} SCOP: d.92.1.11 PDB: 1rmz_A 1ycm_A* 1z3j_A* 2hu6_A* 2oxu_A 2oxw_A 2oxz_A 3lik_A* 3lil_A* 3lir_A* 3ljg_A* 1os9_A 1os2_A 3f17_A* 3ehy_A* 3ehx_A* 3f15_A* 3f16_A* 3f18_A* 3f19_A* ...
Probab=30.13 E-value=19 Score=32.45 Aligned_cols=19 Identities=32% Similarity=0.550 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHcCC
Q 009542 297 LVIGVHELGHILAAKSTGV 315 (532)
Q Consensus 297 ~iL~iHElGH~laAr~~Gv 315 (532)
..+.+||+||.+--.....
T Consensus 109 ~~~~~HE~GH~lGl~H~~~ 127 (159)
T 1y93_A 109 FLTAVHEIGHSLGLGHSSD 127 (159)
T ss_dssp HHHHHHHHHHHTTCCCCSC
T ss_pred hhhhhhhhhhhhcCCCCCC
Confidence 3568999999976544333
No 16
>2w15_A Zinc metalloproteinase BAP1; hydrolase inhibitor complex, metal-binding, zinc-depending, metalloprotease, metalloproteinase/inhibitor complex; HET: WR2; 1.05A {Bothrops asper} PDB: 2w12_A* 2w13_A* 2w14_A* 1nd1_A 3gbo_A
Probab=29.93 E-value=19 Score=33.34 Aligned_cols=17 Identities=41% Similarity=0.507 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 009542 296 ALVIGVHELGHILAAKS 312 (532)
Q Consensus 296 l~iL~iHElGH~laAr~ 312 (532)
.+..++||+||-+=+..
T Consensus 136 ~a~~~AHElGH~lG~~H 152 (202)
T 2w15_A 136 VAVTMAHELGHNLGIHH 152 (202)
T ss_dssp HHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHhhhcCCcc
Confidence 45778999999875554
No 17
>3ayu_A 72 kDa type IV collagenase; protease, hydrolase-hydrolase inhibitor complex; 2.00A {Homo sapiens} PDB: 1qib_A 1hov_A*
Probab=29.63 E-value=20 Score=32.68 Aligned_cols=20 Identities=15% Similarity=0.459 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHcCCc
Q 009542 297 LVIGVHELGHILAAKSTGVE 316 (532)
Q Consensus 297 ~iL~iHElGH~laAr~~Gvk 316 (532)
..+++||+||.+--.....+
T Consensus 115 ~~~~~HE~gH~lGl~H~~~~ 134 (167)
T 3ayu_A 115 FLVAAHAFGHAMGLEHSQDP 134 (167)
T ss_dssp HHHHHHHHHHHTTEECCSCT
T ss_pred eeehhhhhHHhccCCCCCCC
Confidence 35789999999765444433
No 18
>1rm8_A MMP-16, matrix metalloproteinase-16, MT3-MMP; membrane type - matrix metalloproteinase, batimastat, hydroxamate inhibitor, protease, hydrolase; HET: BAT; 1.80A {Homo sapiens} SCOP: d.92.1.11
Probab=29.58 E-value=24 Score=31.94 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHcCCccC
Q 009542 297 LVIGVHELGHILAAKSTGVELG 318 (532)
Q Consensus 297 ~iL~iHElGH~laAr~~Gvk~s 318 (532)
..+.+||+||.+--.....+.+
T Consensus 118 ~~~~~he~gh~lgl~h~~~~~~ 139 (169)
T 1rm8_A 118 FLVAVHELGHALGLEHSNDPTA 139 (169)
T ss_dssp HHHHHHHHHHHHTCCCCSCTTS
T ss_pred eeehhhhhhhhcCCCCCCCCCC
Confidence 3578999999987655444433
No 19
>1c7k_A NCNP, zinc endoprotease; alpha and beta protein, metalloproteinase, hydrolase; 1.00A {Streptomyces caespitosus} SCOP: d.92.1.1 PDB: 1kuh_A
Probab=28.31 E-value=27 Score=31.45 Aligned_cols=11 Identities=45% Similarity=0.851 Sum_probs=9.5
Q ss_pred HHHHHHHHHHH
Q 009542 298 VIGVHELGHIL 308 (532)
Q Consensus 298 iL~iHElGH~l 308 (532)
.+.+||+||.+
T Consensus 79 ~v~aHE~GH~L 89 (132)
T 1c7k_A 79 RVTAHETGHVL 89 (132)
T ss_dssp HHHHHHHHHHH
T ss_pred eEEeeeehhcc
Confidence 47899999986
No 20
>1atl_A Atrolysin C; metalloendopeptidase, hydrolase-hydrolase inhibitor complex; HET: 0QI; 1.80A {Crotalus atrox} SCOP: d.92.1.9 PDB: 1htd_A 1dth_A* 3aig_A* 2aig_P* 4aig_A* 1iag_A
Probab=26.39 E-value=26 Score=32.54 Aligned_cols=17 Identities=41% Similarity=0.442 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 009542 296 ALVIGVHELGHILAAKS 312 (532)
Q Consensus 296 l~iL~iHElGH~laAr~ 312 (532)
.+..++||+||-+=+..
T Consensus 136 ~a~~~AHElGHnlG~~H 152 (202)
T 1atl_A 136 MGVTMAHELGHNLGMEH 152 (202)
T ss_dssp HHHHHHHHHHHHTTCCC
T ss_pred eEEEehhhhccccCcee
Confidence 34688999999865554
No 21
>1bud_A Protein (acutolysin A); metalloproteinase, snake venom, MMP, toxin; 1.90A {Deinagkistrodon acutus} SCOP: d.92.1.9 PDB: 1bsw_A
Probab=26.21 E-value=25 Score=32.48 Aligned_cols=17 Identities=24% Similarity=0.348 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 009542 296 ALVIGVHELGHILAAKS 312 (532)
Q Consensus 296 l~iL~iHElGH~laAr~ 312 (532)
++..++||+||-+=+..
T Consensus 133 ~a~~~AHElGH~lG~~H 149 (197)
T 1bud_A 133 VAITLAHEMAHNLGVSH 149 (197)
T ss_dssp HHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHhhhcCCcc
Confidence 35678999999876554
No 22
>2cki_A Ulilysin; metalloprotease, hydrolase; HET: ARG; 1.7A {Methanosarcina acetivorans} PDB: 2j83_A* 3lum_A* 3lun_A*
Probab=26.09 E-value=21 Score=35.34 Aligned_cols=11 Identities=45% Similarity=0.761 Sum_probs=9.4
Q ss_pred HHHHHHHHHHH
Q 009542 298 VIGVHELGHIL 308 (532)
Q Consensus 298 iL~iHElGH~l 308 (532)
-.++||+||++
T Consensus 164 ~TltHEvGH~L 174 (262)
T 2cki_A 164 RTATHEIGHWL 174 (262)
T ss_dssp HHHHHHHHHHT
T ss_pred chhhhhhhhhh
Confidence 56899999986
No 23
>1qua_A Acutolysin-C, hemorrhagin III; metalloprotease, hemorrhagic toxin, snake venom proteinase; 2.20A {Deinagkistrodon acutus} SCOP: d.92.1.9
Probab=25.61 E-value=26 Score=32.36 Aligned_cols=17 Identities=41% Similarity=0.497 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 009542 296 ALVIGVHELGHILAAKS 312 (532)
Q Consensus 296 l~iL~iHElGH~laAr~ 312 (532)
.+..++||+||-+=+..
T Consensus 135 ~a~~~AHElGH~lG~~H 151 (197)
T 1qua_A 135 MAVTMAHELGHNLGMNH 151 (197)
T ss_dssp HHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHhcCCCC
Confidence 45678999999865443
No 24
>2ddf_A ADAM 17; hydrolase; HET: INN CIT; 1.70A {Homo sapiens} PDB: 2fv5_A* 3l0v_A* 3kme_A* 3l0t_A* 3kmc_A* 3le9_A* 3lea_A* 3lgp_A* 3o64_A* 3ewj_A* 3edz_A* 3e8r_A* 2fv9_A* 1zxc_A* 2oi0_A* 3b92_A* 2a8h_A* 1bkc_A* 3cki_A 1bkc_I* ...
Probab=25.45 E-value=27 Score=33.47 Aligned_cols=17 Identities=41% Similarity=0.618 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 009542 296 ALVIGVHELGHILAAKS 312 (532)
Q Consensus 296 l~iL~iHElGH~laAr~ 312 (532)
...+++||+||-+=+..
T Consensus 182 ~a~~~AHElGHnlG~~H 198 (257)
T 2ddf_A 182 ADLVTTHELGHNFGAEH 198 (257)
T ss_dssp HHHHHHHHHHHHTTCCC
T ss_pred eeeeeeeehhhhcCccc
Confidence 45778999999876554
No 25
>1kuf_A Atrolysin E, metalloproteinase; alpha/beta protein, hydrolase; 1.35A {Protobothrops mucrosquamatus} SCOP: d.92.1.9 PDB: 1kui_A 1kuk_A 1kug_A 1wni_A
Probab=25.27 E-value=26 Score=32.57 Aligned_cols=17 Identities=41% Similarity=0.518 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 009542 296 ALVIGVHELGHILAAKS 312 (532)
Q Consensus 296 l~iL~iHElGH~laAr~ 312 (532)
.+..++||+||-+=+..
T Consensus 138 ~a~~~AHElGH~lG~~H 154 (203)
T 1kuf_A 138 VAVTMTHELGHNLGMEH 154 (203)
T ss_dssp HHHHHHHHHHHHTTCCC
T ss_pred hHHHHHHHhhhhcCCCC
Confidence 45788999999865554
No 26
>1yp1_A FII; FII hydrolase; 1.90A {Deinagkistrodon acutus}
Probab=25.10 E-value=27 Score=32.45 Aligned_cols=17 Identities=41% Similarity=0.513 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 009542 296 ALVIGVHELGHILAAKS 312 (532)
Q Consensus 296 l~iL~iHElGH~laAr~ 312 (532)
++..++||+||-+=+..
T Consensus 135 ~a~~~AHElGH~lG~~H 151 (202)
T 1yp1_A 135 MAVVMAHELGHNLGMLH 151 (202)
T ss_dssp HHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHhcCCCC
Confidence 35678999999875554
No 27
>3b8z_A Protein adamts-5; alpha/beta, hydrolase; HET: 294; 1.40A {Homo sapiens} PDB: 3hyg_A* 3hy9_A* 3hy7_A* 3ljt_A*
Probab=24.67 E-value=27 Score=32.63 Aligned_cols=16 Identities=31% Similarity=0.544 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 009542 297 LVIGVHELGHILAAKS 312 (532)
Q Consensus 297 ~iL~iHElGH~laAr~ 312 (532)
+..++||+||-+=+..
T Consensus 142 a~~~AHElGHnlG~~H 157 (217)
T 3b8z_A 142 AFTVAHEIGHLLGLSH 157 (217)
T ss_dssp HHHHHHHHHHHTTCCC
T ss_pred hhhhHhhhhhhcCCcC
Confidence 4678999999875544
No 28
>830c_A MMP-13, MMP-13; matrix metalloprotease; HET: RS1; 1.60A {Homo sapiens} SCOP: d.92.1.11 PDB: 456c_A* 1you_A* 4a7b_A* 3tvc_A* 1eub_A* 1xuc_A* 1xud_A* 1xur_A* 2yig_A* 3elm_A* 3i7g_A* 3i7i_A* 3zxh_A* 2ow9_A* 2ozr_A* 3kek_A* 3kej_A* 3kec_A* 2d1n_A* 1fls_A* ...
Probab=23.53 E-value=30 Score=31.76 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHcCCccC
Q 009542 297 LVIGVHELGHILAAKSTGVELG 318 (532)
Q Consensus 297 ~iL~iHElGH~laAr~~Gvk~s 318 (532)
..+.+||+||.+--..-..+.+
T Consensus 114 ~~v~~hE~Gh~lGl~h~~~~~a 135 (168)
T 830c_A 114 FLVAAHEFGHSLGLDHSKDPGA 135 (168)
T ss_dssp HHHHHHHHHHHTTBCCCSCTTS
T ss_pred hhhhhhhhcchhcCCCCCCCcc
Confidence 4578999999986554444443
No 29
>2v4b_A Adamts-1; zymogen, protease, hydrolase, metalloprotease, heparin-binding, metalloproteinase, metzincin, glycoprotein metal-binding; 2.00A {Homo sapiens} PDB: 2jih_A 3q2g_A* 3q2h_A*
Probab=23.20 E-value=30 Score=34.10 Aligned_cols=18 Identities=33% Similarity=0.541 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHc
Q 009542 296 ALVIGVHELGHILAAKST 313 (532)
Q Consensus 296 l~iL~iHElGH~laAr~~ 313 (532)
.+.+++||+||-+=+.+-
T Consensus 143 ~a~t~AHElGHnlG~~HD 160 (300)
T 2v4b_A 143 AAFTTAHELGHVFNMPHD 160 (300)
T ss_dssp HHHHHHHHHHHHTTCCCT
T ss_pred ceehhhhhhhhhcCCcCC
Confidence 357789999998765543
No 30
>2rjp_A Adamts-4; metalloprotease domain, aggrecanase, cleavage on PAIR of basic residues, extracellular matrix, glycoprotein, hydrolase, metal-binding; HET: 886; 2.80A {Homo sapiens} PDB: 3b2z_A
Probab=22.14 E-value=32 Score=34.18 Aligned_cols=17 Identities=24% Similarity=0.513 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 009542 296 ALVIGVHELGHILAAKS 312 (532)
Q Consensus 296 l~iL~iHElGH~laAr~ 312 (532)
.+.+++||+||-+=+.+
T Consensus 143 ~a~t~AHElGHnlGm~H 159 (316)
T 2rjp_A 143 SAFTAAHQLGHVFNMLH 159 (316)
T ss_dssp HHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHhhcCccC
Confidence 45788999999876554
No 31
>3ma2_D Matrix metalloproteinase-14; protein - protein complex, cleavage on PAIR of basic residue disulfide bond, membrane, metal-binding; 2.05A {Homo sapiens} SCOP: d.92.1.11 PDB: 1bqq_M 1buv_M
Probab=21.72 E-value=34 Score=31.85 Aligned_cols=20 Identities=35% Similarity=0.582 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHcCCcc
Q 009542 298 VIGVHELGHILAAKSTGVEL 317 (532)
Q Consensus 298 iL~iHElGH~laAr~~Gvk~ 317 (532)
.+.+||+||.+--.....+.
T Consensus 124 ~v~~hE~Gh~lGl~hs~~~~ 143 (181)
T 3ma2_D 124 LVAVHELGHALGLEHSSDPS 143 (181)
T ss_dssp HHHHHHHHHHTTCCCCSCTT
T ss_pred eeehhhccccccCCcCCCCc
Confidence 57899999996544443333
No 32
>2rjq_A Adamts-5; metalloprotease domain, aggrecanase, cleavage on PAIR of BAS residues, extracellular matrix, glycoprotein, hydrolase, ME binding; HET: NAG BAT; 2.60A {Homo sapiens}
Probab=21.53 E-value=33 Score=34.91 Aligned_cols=17 Identities=35% Similarity=0.560 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 009542 296 ALVIGVHELGHILAAKS 312 (532)
Q Consensus 296 l~iL~iHElGH~laAr~ 312 (532)
++.+++||+||-+=+.+
T Consensus 143 ~a~~~AHElGHnlGm~H 159 (378)
T 2rjq_A 143 AAFTVAHEIGHLLGLSH 159 (378)
T ss_dssp HHHHHHHHHHHHTTCCC
T ss_pred hhhhhhhhhhhhcCccC
Confidence 45789999999886654
No 33
>4dd8_A Disintegrin and metalloproteinase domain-containi 8; batimastat, inflammation, alpha/beta motif, metalloproteinas allergic asthma, tumorigenesis; HET: BAT; 2.10A {Homo sapiens}
Probab=21.23 E-value=42 Score=31.30 Aligned_cols=16 Identities=31% Similarity=0.441 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 009542 297 LVIGVHELGHILAAKS 312 (532)
Q Consensus 297 ~iL~iHElGH~laAr~ 312 (532)
+..++||+||-+=+..
T Consensus 134 a~~~AHElGH~lG~~H 149 (208)
T 4dd8_A 134 ACTMAHEMGHNLGMDH 149 (208)
T ss_dssp HHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHcCCcC
Confidence 4679999999875543
No 34
>2isb_A Fumarase, FUM-1; NP_069927.1, fumarase of FUM-1, structural genomics, PSI-2, structure initiative, joint center for structural genomics; HET: MSE; 1.66A {Archaeoglobus fulgidus} SCOP: c.8.9.1
Probab=21.09 E-value=73 Score=30.46 Aligned_cols=60 Identities=18% Similarity=0.109 Sum_probs=45.0
Q ss_pred cCCCChhHHHHhhccccccceeeeccccccCceEEEEeccCCchHHHHHHHHHHHHhhhCCceEEEEeecCCCCCcEEEE
Q 009542 154 YIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVV 233 (532)
Q Consensus 154 ~~~i~~edl~~ik~~~Fg~dtF~~t~~~~~~~gvi~rGnLR~~~e~~y~~l~~~l~~~fGd~y~lfl~~~~~~~kPv~~v 233 (532)
..|+++||+++||- ++-|...|.+-.-++.+|+|+.+.|++ |++. .-...+++++..
T Consensus 20 ~~Plt~e~v~~L~v----------------GD~V~LsG~i~taRDaAHkRl~e~l~~--Ge~l-----P~dl~g~~Iyy~ 76 (192)
T 2isb_A 20 RTPLVKDQILKLKV----------------GDVVYITGEIFTARDEAHARALEWMEE--GKEL-----PFSFDKGVVYHC 76 (192)
T ss_dssp ESSCCHHHHHHCCT----------------TCEEEEEEEEEECCHHHHHHHHHHHHH--TCCC-----SSCCTTCEEECB
T ss_pred CCCCCHHHHhhCCC----------------CCEEEEEEEEEEEhHHHHHHHHHHHHc--CCCC-----CcCCCCCEEEEe
Confidence 45888999999984 677888888889999999999999988 5432 112246677666
Q ss_pred EcC
Q 009542 234 VPR 236 (532)
Q Consensus 234 ~P~ 236 (532)
=|.
T Consensus 77 GP~ 79 (192)
T 2isb_A 77 GPL 79 (192)
T ss_dssp CCE
T ss_pred cCC
Confidence 554
No 35
>2ero_A VAP-1, vascular apoptosis-inducing protein 1; metalloprotease, disintegrin, calcium-binding, ADAM, SVMP, M protein, toxin; HET: NAG; 2.50A {Crotalus atrox} PDB: 2erp_A* 2erq_A*
Probab=20.95 E-value=40 Score=35.25 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHcC
Q 009542 295 TALVIGVHELGHILAAKSTG 314 (532)
Q Consensus 295 Ll~iL~iHElGH~laAr~~G 314 (532)
.++.+++||+||-+=+.+-+
T Consensus 145 ~~a~t~AHElGHnlG~~HD~ 164 (427)
T 2ero_A 145 LVAIAMAHEMGHNLGMDHDK 164 (427)
T ss_dssp HHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHHhcCCccCC
Confidence 34578999999988766543
No 36
>1sat_A Serratia protease; parallel beta helix, parallel beta roll, hydrolase (serine protease); 1.75A {Serratia marcescens} SCOP: b.80.7.1 d.92.1.6 PDB: 1af0_A* 1smp_A 1srp_A
Probab=20.15 E-value=40 Score=35.82 Aligned_cols=20 Identities=30% Similarity=0.305 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHcCCcc
Q 009542 298 VIGVHELGHILAAKSTGVEL 317 (532)
Q Consensus 298 iL~iHElGH~laAr~~Gvk~ 317 (532)
.+++||+||++=-.+-..+-
T Consensus 172 ~va~HEiGHaLGL~Hs~~~~ 191 (471)
T 1sat_A 172 QTFTHEIGHALGLSHPGDYN 191 (471)
T ss_dssp HHHHHHHHHHHTCCCSSCCC
T ss_pred eeeeeeccccccCCCCCCcc
Confidence 56899999999776655554
Done!