Citrus Sinensis ID: 009545

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530--
METPPWFTIILLWLLSASMSWGAMHSNNYQNKIQKECSFTRFPILCVQTLMGFESTKHQQHIHLMSALVNKSIAETKLPTSYFSNFSSQLLAKDFQGVRAVTDHCEEMMSMSLKRLEKSLLALQNSPTKNKDDIQTWLGAALTFQQTCKDSVNSLGLSERNEVIKKISQKMDYLSQLTSNPLALVNRIARASYPKNSTYNRRLDEEQGDFPNWVSAKNRKLLQAPRINANVIVAQDGTGNYRTVSEAISAASGNRFVIYVKAGVYKEKIRTNKDGITLIGDGKYTTIITGDDNARRGTSMPATATFSDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFIFGNAAAVFQNCYLVLRRPKGSYNAITANGRTDPGQNTGFSLQNCKIAAGSDYAPVKHKYNSYLGRPWKQYSRAVVMQSSIDDSISSSGWVEWPGAGGYANTLYFAEYANVGPGAATSNRVKWPGFHVIGPDVAVKFTVANFIAGTSWLPSTGVIFDGGL
cccccHHHHHHHHHHHHHHHccccccccccHHHHHccccccccccHHHHHccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccEEEEccccccccccHHHHHHHcccccEEEEEEcEEEEEEEEEEcccEEEEEccccccEEEEcccccccccccEEEEEccccEEEccEEEEccccccccEEEEEEcccEEEEEccEEEEcccccccccccEEEEccEEEEEccEEEcccEEEEEccEEEEEcccccccEEEcccccccccccEEEEEccEEEccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccEEEEEEccccccccccccccccccccccHHHHcccccccccccccccccccccccccc
cccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHccccccccEEEcccccccEccHHHHHHHccccccccEEEccEEEEEEEEcccEEEEEEcccccEEEEEccccccccccEEEEEcccccEEEEEEEEEcccHHHcccccEEEccccEEEEEEEEEcccccEEEcccEEEEEccEEEEccccEEEccEEEEEccEEEEcccccccEEEEEEcccccccccEEEEEccEEEEccccHHHHHHccEEEEcccccccEEEEEccEEcccEccccccccccccccccccEEEEEccEcHHHccccccccccEEEccHHHHHHccHHHHHccccccccccccccccc
METPPWFTIILLWLLSASMswgamhsnnYQNKIQkecsftrfpILCVQTLmgfestkhQQHIHLMSALVNKSiaetklptsyfsnfsSQLLAKDFQGVRAVTDHCEEMMSMSLKRLEKSLLALqnsptknkdDIQTWLGAALTFQQTCKDsvnslglseRNEVIKKISQKMDYLSQLTSNPLALVNRIArasypknstynrrldeeqgdfpnwvsAKNRkllqaprinanvivaqdgtgnyRTVSEAISAASGNRFVIYVKAGVykekirtnkdgitligdgkyttiitgddnarrgtsmpatatfsdgfiardigfhntagpqgEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFyrdtdiygtidFIFGNAAAVFQNCYlvlrrpkgsynaitangrtdpgqntgfslqnckiaagsdyapvkhkynsylgrpwkqYSRAVVMQSSiddsisssgwvewpgaggyantLYFAEyanvgpgaatsnrvkwpgfhvigpdvaVKFTVANFiagtswlpstgvifdggl
METPPWFTIILLWLLSASMSWGAMHSNNYQNKIQKECSFTRFPILCVQTLMGFESTKHQQHIHLMSALVNKSIAETKLPTSYFSNFSSQLLAKDFQGVRAVTDHCEEMMSMSLKRLEKSLLALQNSPTKNKDDIQTWLGAALTFQQTCKDSvnslglserNEVIKKISQKMDYLSQLTSNPLALVNRIarasypknstynrrLDEEQGDFPNWVSAKNRkllqaprinANVIVAQDGTGNYRTVSEAisaasgnrfVIYVKAgvykekirtnkdgitligdgkyttiitgddnarrgtsmPATATFSDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFIFGNAAAVFQNCYLVLRRPKGSYNAITAngrtdpgqntGFSLQNCKIAAGSDYAPVKHKYNSYLGRPWKQYSRAVVMQSSIDDSISSSGWVEWPGAGGYANTLYFAEYANVGPGAATSNRVKWPGFHVIGPDVAVKFTVANFIagtswlpstgvifdggl
METPPWFTIILLWLLSASMSWGAMHSNNYQNKIQKECSFTRFPILCVQTLMGFESTKHQQHIHLMSALVNKSIAETKLPTSYFSNFSSQLLAKDFQGVRAVTDHCEEMMSMSLKRLEKSLLALQNSPTKNKDDIQTWLGAALTFQQTCKDSVNSLGLSERNEVIKKISQKMDYLSQLTSNPLALVNRIARASYPKNSTYNRRLDEEQGDFPNWVSAKNRKLLQAPRINANVIVAQDGTGNYRTVSEAISAASGNRFVIYVKAGVYKEKIRTNKDGITLIGDGKYTTIITGDDNARRGTSMPATATFSDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFIFGNAAAVFQNCYLVLRRPKGSYNAITANGRTDPGQNTGFSLQNCKIAAGSDYAPVKHKYNSYLGRPWKQYSRAVVMQssiddsisssGWVEWPGAGGYANTLYFAEYANVGPGAATSNRVKWPGFHVIGPDVAVKFTVANFIAGTSWLPSTGVIFDGGL
****PWFTIILLWLLSASMSWGAMHSNNYQNKIQKECSFTRFPILCVQTLMGFESTKHQQHIHLMSALVNKSIAETKLPTSYFSNFSSQLLAKDFQGVRAVTDHCEE*************************DIQTWLGAALTFQQTCKDSVNSLGLSERNEVIKKISQKMDYLSQLTSNPLALVNRIARASY****************FPNWVSAKNRKLLQAPRINANVIVAQDGTGNYRTVSEAISAASGNRFVIYVKAGVYKEKIRTNKDGITLIGDGKYTTIITGDDNA******PATATFSDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFIFGNAAAVFQNCYLVLRRPKGSYNAITANG******NTGFSLQNCKIAAGSDYAPVKHKYNSYLGRPWKQYSRAVVMQSSIDDSISSSGWVEWPGAGGYANTLYFAEYANVGPGAATSNRVKWPGFHVIGPDVAVKFTVANFIAGTSWLPSTGVIF****
***PPWF*IILLWLLSASMS***************ECSFTRFPILCV*****************MSALVNKSIAETKLP********************AVTDHCEEMMSMSLKRLEKS*************DIQTWLGAALTFQQTCKDSVNSLGL************KMDYLSQLTSNPLALVNRI********************DFPNWVSAKNRKLLQAPRINANVIVAQDGTGNYRTVSEAISAASGNRFVIYVKAGVYKEKIRTNKDGITLIGDGKYTTIITGDDNARRGTSMPATATFSDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFIFGNAAAVFQNCYLVLRRPKGSYNAITANGRTDPGQNTGFSLQNCKIAAGSDYAPVKHKYNSYLGRPWKQYSRAVVMQSSIDDSISSSGWVEWPGAGGYANTLYFAEYANVGPGAATSNRVKWPGFHVIGPDVAVKFTVANFIAGTSWLPSTGVIFDGGL
METPPWFTIILLWLLSASMSWGAMHSNNYQNKIQKECSFTRFPILCVQTLMGFESTKHQQHIHLMSALVNKSIAETKLPTSYFSNFSSQLLAKDFQGVRAVTDHCEEMMSMSLKRLEKSLLALQNSPTKNKDDIQTWLGAALTFQQTCKDSVNSLGLSERNEVIKKISQKMDYLSQLTSNPLALVNRIARASYPKNSTYNRRLDEEQGDFPNWVSAKNRKLLQAPRINANVIVAQDGTGNYRTVSEAISAASGNRFVIYVKAGVYKEKIRTNKDGITLIGDGKYTTIITGDDNARRGTSMPATATFSDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFIFGNAAAVFQNCYLVLRRPKGSYNAITANGRTDPGQNTGFSLQNCKIAAGSDYAPVKHKYNSYLGRPWKQYSRAVVMQSSIDDSISSSGWVEWPGAGGYANTLYFAEYANVGPGAATSNRVKWPGFHVIGPDVAVKFTVANFIAGTSWLPSTGVIFDGGL
*ETPPWFTIILLWLLSASMSWGAMHSNNYQNKIQKECSFTRFPILCVQTLMGFESTKHQQHIHLMSALVNKSIAETKLPTSYFSNFSSQLLAKDFQGVRAVTDHCEEMMSMSLKRLEKSLLALQNSPTKNKDDIQTWLGAALTFQQTCKDSVNSLGLSERNEVIKKISQKMDYLSQLTSNPLALVNRIARA*****************DFPNWVSAKNRKLLQAPRINANVIVAQDGTGNYRTVSEAISAASGNRFVIYVKAGVYKEKIRTNKDGITLIGDGKYTTIITGDDNARRGTSMPATATFSDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFIFGNAAAVFQNCYLVLRRPKGSYNAITANGRTDPGQNTGFSLQNCKIAAGSDYAPVKHKYNSYLGRPWKQYSRAVVMQSSIDDSISSSGWVEWPGAGGYANTLYFAEYANVGPGAATSNRVKWPGFHVIGPDVAVKFTVANFIAGTSWLPSTGVIF****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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METPPWFTIILLWLLSASMSWGAMHSNNYQNKIQKECSFTRFPILCVQTLMGFESTKHQQHIHLMSALVNKSIAETKLPTSYFSNFSSQLLAKDFQGVRAVTDHCEEMMSMSLKRLEKSLLALQNSPTKNKDDIQTWLGAALTFQQTCKDSVNSLGLSERNEVIKKISQKMDYLSQLTSNPLALVNRIARASYPKNSTYNRRLDEEQGDFPNWVSAKNRKLLQAPRINANVIVAQDGTGNYRTVSEAISAASGNRFVIYVKAGVYKEKIRTNKDGITLIGDGKYTTIITGDDNARRGTSMPATATFSDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFIFGNAAAVFQNCYLVLRRPKGSYNAITANGRTDPGQNTGFSLQNCKIAAGSDYAPVKHKYNSYLGRPWKQYSRAVVMQSSIDDSISSSGWVEWPGAGGYANTLYFAEYANVGPGAATSNRVKWPGFHVIGPDVAVKFTVANFIAGTSWLPSTGVIFDGGL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query532 2.2.26 [Sep-21-2011]
Q3E989512 Probable pectinesterase/p yes no 0.874 0.908 0.484 1e-123
O04887510 Pectinesterase 2 OS=Citru no no 0.770 0.803 0.474 1e-107
P83947545 Pectinesterase/pectineste N/A no 0.770 0.752 0.458 1e-102
Q96576544 Pectinesterase 3 OS=Solan N/A no 0.796 0.779 0.451 1e-101
O22149511 Probable pectinesterase/p no no 0.772 0.804 0.462 1e-101
Q9FK05587 Probable pectinesterase/p no no 0.930 0.843 0.408 1e-100
Q1JPL7557 Pectinesterase/pectineste no no 0.774 0.739 0.468 1e-100
P83948584 Pectinesterase 3 OS=Citru no no 0.919 0.837 0.409 6e-99
Q9M3B0598 Probable pectinesterase/p no no 0.907 0.807 0.409 2e-98
Q96575550 Pectinesterase 2.2 OS=Sol N/A no 0.795 0.769 0.449 3e-98
>sp|Q3E989|PME54_ARATH Probable pectinesterase/pectinesterase inhibitor 54 OS=Arabidopsis thaliana GN=PME54 PE=2 SV=1 Back     alignment and function desciption
 Score =  443 bits (1140), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 253/522 (48%), Positives = 326/522 (62%), Gaps = 57/522 (10%)

Query: 9   IILLWLL--SASMSWGAMHSN---NYQNKIQKECSFTRFPILCVQTLMGFESTKHQQHIH 63
           ++L W+L  +A +   A   N    YQN++Q+ CS T++  LCVQ L  F        + 
Sbjct: 6   MVLFWVLLVNALLIVDASSRNMPFAYQNEMQRHCSSTKYTSLCVQNLREFRHGS-LDGLD 64

Query: 64  LMSALVNKSIAETKL--PTSYFSNFSSQLLAKDFQGVR----AVTDHCEEMMSMSLKRLE 117
            +S LVNK+I+++ L  P    S  SS+L++ +         +V+D CE +M MS +RL 
Sbjct: 65  FVSFLVNKTISDSNLLIPPLSSSMGSSKLVSLEDSTYTLPSPSVSDSCERLMKMSTRRLR 124

Query: 118 KSLLALQNSPTKN--KDDIQTWLGAALTFQQTCKDSVNSLGLSERNEVIKKISQKMDYLS 175
           +++ AL  S  K   K D+QTWL AA+TFQQ CKDS+   G S     I  ISQKMD+LS
Sbjct: 125 QAMEALNGSSRKRHTKHDVQTWLSAAMTFQQACKDSILDSGGSSSASAISHISQKMDHLS 184

Query: 176 QLTSNPLALVNRIARASYPKNSTYNRRLDEEQGDFPNWVSAKNRKLLQAPRINANVIVAQ 235
           +L SN L LV+ I +   PK  +            P WV+A  R+LL   R  A+V+VA+
Sbjct: 185 RLVSNSLTLVDTIMKNPKPKTKSTA---------LPRWVTAGERRLL-VGRARAHVVVAK 234

Query: 236 DGTGNYRTVSEAISAASGNRFVIYVKAGVYKEKIRTNKDGITLIGDGKYTTIITGDDNAR 295
           DG+G+YRTV EA++AA GN                           GK  T+I GDD+A 
Sbjct: 235 DGSGDYRTVMEAVTAAHGN---------------------------GKDLTVIVGDDSAT 267

Query: 296 RGTSMPATATFS---DGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTL 352
            GTS+P TAT +   DGFIARDIG  N AGP+G QA+AL++ SD +V YRCSI+GYQDTL
Sbjct: 268 GGTSVPDTATMTVTGDGFIARDIGIKNIAGPRGHQAIALSITSDQSVLYRCSISGYQDTL 327

Query: 353 YALALRQFYRDTDIYGTIDFIFGNAAAVFQNCYLVLRRPKG--SYNAITANGRTDPGQNT 410
           YA ALRQFYR+ DIYGTIDFIFGNAAAVFQ+C + LRRP G  +YN I ANGRTD  QNT
Sbjct: 328 YAAALRQFYRECDIYGTIDFIFGNAAAVFQSCNIFLRRPHGVKAYNVILANGRTDQRQNT 387

Query: 411 GFSLQNCKIAAGSDYAPVKHKYNSYLGRPWKQYSRAVVMQSSIDDSISSSGWVEWPGAGG 470
           GF+L +C+I   SD +PVKHKY+SYLGRPW++YSRA+VM+S IDD+I+  GW  W  +G 
Sbjct: 388 GFALHSCRIRTDSDLSPVKHKYSSYLGRPWRKYSRAIVMESYIDDAIAEGGWAGWLDSGD 447

Query: 471 YA-NTLYFAEYANVGPGAATSNRVKWPGFHVIGPDVAVKFTV 511
               TLYF E+ N GP A  S RV W GFH IG + A  F+V
Sbjct: 448 EVLKTLYFGEFKNYGPKARISKRVTWEGFHSIGFEEANYFSV 489
Acts in the modification of cell walls via demethylesterification of cell wall pectin.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1
>sp|O04887|PME2_CITSI Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE=2 SV=1 Back     alignment and function description
>sp|P83947|PME1_FICPW Pectinesterase/pectinesterase inhibitor OS=Ficus pumila var. awkeotsang PE=1 SV=1 Back     alignment and function description
>sp|Q96576|PME3_SOLLC Pectinesterase 3 OS=Solanum lycopersicum GN=PME3 PE=3 SV=1 Back     alignment and function description
>sp|O22149|PME17_ARATH Probable pectinesterase/pectinesterase inhibitor 17 OS=Arabidopsis thaliana GN=PME17 PE=2 SV=2 Back     alignment and function description
>sp|Q9FK05|PME61_ARATH Probable pectinesterase/pectinesterase inhibitor 61 OS=Arabidopsis thaliana GN=PME61 PE=1 SV=1 Back     alignment and function description
>sp|Q1JPL7|PME18_ARATH Pectinesterase/pectinesterase inhibitor 18 OS=Arabidopsis thaliana GN=PME18 PE=1 SV=3 Back     alignment and function description
>sp|P83948|PME3_CITSI Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1 Back     alignment and function description
>sp|Q9M3B0|PME34_ARATH Probable pectinesterase/pectinesterase inhibitor 34 OS=Arabidopsis thaliana GN=PME34 PE=2 SV=1 Back     alignment and function description
>sp|Q96575|PME22_SOLLC Pectinesterase 2.2 OS=Solanum lycopersicum GN=PME2.2 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query532
255550291527 Pectinesterase-2 precursor, putative [Ri 0.969 0.979 0.676 0.0
359484245506 PREDICTED: probable pectinesterase/pecti 0.936 0.984 0.639 0.0
356532840514 PREDICTED: LOW QUALITY PROTEIN: probable 0.932 0.964 0.612 1e-176
297812269527 pectinesterase family protein [Arabidops 0.860 0.869 0.505 1e-129
15242077512 Putative pectinesterase/pectinesterase i 0.874 0.908 0.484 1e-122
116788449571 unknown [Picea sitchensis] 0.902 0.840 0.455 1e-113
255554971547 Pectinesterase precursor, putative [Rici 0.962 0.936 0.439 1e-110
116788113557 unknown [Picea sitchensis] 0.930 0.888 0.438 1e-110
161019194595 pectin methylesterase-like protein [Taiw 0.926 0.828 0.432 1e-107
224118274550 predicted protein [Populus trichocarpa] 0.922 0.892 0.447 1e-106
>gi|255550291|ref|XP_002516196.1| Pectinesterase-2 precursor, putative [Ricinus communis] gi|223544682|gb|EEF46198.1| Pectinesterase-2 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  718 bits (1853), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/531 (67%), Positives = 425/531 (80%), Gaps = 15/531 (2%)

Query: 9   IILLWLLSASMSWGAMHSNNYQNKIQKECSFTRFPILCVQTLMGFESTKHQQHIHLMSAL 68
            ++ WLL ++++  +M  N    +IQ+ECSFTR+P LC+QTL G         +H++SAL
Sbjct: 4   FMIFWLLGSALAASSMDENL---QIQEECSFTRYPSLCLQTLRGL----RDDSVHIVSAL 56

Query: 69  VNKSIAETKLPTSYFSNFSSQLLAKDFQGVRAVTDHCEEMMSMSLKRLEKSLLALQNSPT 128
           VNKSI+ETKLP S+F++ +SQL  ++ Q  ++ TD+CE +M MSLK L+KSLLAL+ SP 
Sbjct: 57  VNKSISETKLPVSFFTSLTSQLGIQEAQYTQSTTDYCENLMKMSLKLLDKSLLALKQSPE 116

Query: 129 KNKDDIQTWLGAALTFQQTCKDSVNSLGLSERNEVIKKISQKMDYLSQLTSNPLALVNRI 188
           KNK+DIQTWL AALT+QQ CKDSV+SLGL     +  +IS+KMDYLS+L SNPLALVNRI
Sbjct: 117 KNKNDIQTWLSAALTYQQACKDSVDSLGLPT-GGLTSQISRKMDYLSELVSNPLALVNRI 175

Query: 189 A---RASYPKNSTYNRRLDEEQGDFPNWVSAKNRKLLQAPRINANVIVAQDGTGNYRTVS 245
                    KNST +R L EE  DFP WVSAK+RKLLQ+  I AN +VA+DGTGNY TVS
Sbjct: 176 TGDHDNKLKKNSTRSRYLGEEIQDFPKWVSAKDRKLLQSSTIKANAVVAKDGTGNYETVS 235

Query: 246 EAISAASGNRFVIYVKAGVYKEKIRTNKDGITLIGDGKYTTIITGDDNARRGTSMPATAT 305
           EAI AA G RFVIYVKAGVYKEKIRTNKDGITLIG+GKY+TII GDD+   G+SMP +AT
Sbjct: 236 EAIKAAGGGRFVIYVKAGVYKEKIRTNKDGITLIGEGKYSTIIVGDDSVGDGSSMPGSAT 295

Query: 306 FS---DGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYR 362
           F+   DGFIARDIGF N AGPQGEQALAL +ASDH+V YRCSIAGYQDTLYAL+ RQFYR
Sbjct: 296 FTITGDGFIARDIGFQNAAGPQGEQALALYIASDHSVLYRCSIAGYQDTLYALSQRQFYR 355

Query: 363 DTDIYGTIDFIFGNAAAVFQNCYLVLRRP-KGSYNAITANGRTDPGQNTGFSLQNCKIAA 421
           + DIYGTIDFIFGNAAAVFQNCYLVLRRP  GSYN I ANGR+DPGQNTGFS+QNC+I A
Sbjct: 356 ECDIYGTIDFIFGNAAAVFQNCYLVLRRPDHGSYNVILANGRSDPGQNTGFSVQNCRITA 415

Query: 422 GSDYAPVKHKYNSYLGRPWKQYSRAVVMQSSIDDSISSSGWVEWPGAGGYANTLYFAEYA 481
            SD++PVKH YNSYLGRPWKQYSR+++M+S IDD+IS  GW+EWPGAG Y+ +LYFAEY+
Sbjct: 416 SSDFSPVKHSYNSYLGRPWKQYSRSIIMESYIDDAISWKGWIEWPGAGSYSKSLYFAEYS 475

Query: 482 NVGPGAATSNRVKWPGFHVIGPDVAVKFTVANFIAGTSWLPSTGVIFDGGL 532
           N GPGA TS R  WPGFHVIG + AVKFTV  FI+G+SWLPSTGV F  GL
Sbjct: 476 NTGPGAGTSKRPNWPGFHVIGAEEAVKFTVGKFISGSSWLPSTGVTFISGL 526

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359484245|ref|XP_002277293.2| PREDICTED: probable pectinesterase/pectinesterase inhibitor 54-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356532840|ref|XP_003534978.1| PREDICTED: LOW QUALITY PROTEIN: probable pectinesterase/pectinesterase inhibitor 54-like [Glycine max] Back     alignment and taxonomy information
>gi|297812269|ref|XP_002874018.1| pectinesterase family protein [Arabidopsis lyrata subsp. lyrata] gi|297319855|gb|EFH50277.1| pectinesterase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15242077|ref|NP_197586.1| Putative pectinesterase/pectinesterase inhibitor 54 [Arabidopsis thaliana] gi|122214307|sp|Q3E989.1|PME54_ARATH RecName: Full=Probable pectinesterase/pectinesterase inhibitor 54; Includes: RecName: Full=Pectinesterase inhibitor 54; AltName: Full=Pectin methylesterase inhibitor 54; Includes: RecName: Full=Pectinesterase 54; Short=PE 54; AltName: Full=Pectin methylesterase 54; Short=AtPME54; Flags: Precursor gi|332005515|gb|AED92898.1| Putative pectinesterase/pectinesterase inhibitor 54 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|116788449|gb|ABK24883.1| unknown [Picea sitchensis] Back     alignment and taxonomy information
>gi|255554971|ref|XP_002518523.1| Pectinesterase precursor, putative [Ricinus communis] gi|223542368|gb|EEF43910.1| Pectinesterase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|116788113|gb|ABK24761.1| unknown [Picea sitchensis] Back     alignment and taxonomy information
>gi|161019194|gb|ABQ42392.1| pectin methylesterase-like protein [Taiwania cryptomerioides] Back     alignment and taxonomy information
>gi|224118274|ref|XP_002317777.1| predicted protein [Populus trichocarpa] gi|222858450|gb|EEE95997.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query532
TAIR|locus:2147097512 AT5G20860 [Arabidopsis thalian 0.454 0.472 0.590 2e-115
TAIR|locus:2050941511 AT2G45220 [Arabidopsis thalian 0.774 0.806 0.461 1.6e-93
TAIR|locus:2154277587 PMEPCRF "pectin methylesterase 0.930 0.843 0.403 6.3e-92
TAIR|locus:2082951598 AT3G49220 [Arabidopsis thalian 0.924 0.822 0.409 1e-91
TAIR|locus:2200076557 PMEPCRA "methylesterase PCR A" 0.774 0.739 0.461 5.1e-90
TAIR|locus:2077710529 PME61 "pectin methylesterase 6 0.780 0.784 0.461 1.1e-89
TAIR|locus:2153112536 AT5G51490 [Arabidopsis thalian 0.793 0.787 0.441 2.3e-87
TAIR|locus:2153127540 AT5G51500 [Arabidopsis thalian 0.958 0.944 0.394 2.3e-87
TAIR|locus:2053728518 ATPMEPCRD [Arabidopsis thalian 0.778 0.799 0.440 2e-86
TAIR|locus:2101836519 AT3G60730 [Arabidopsis thalian 0.567 0.581 0.512 4.4e-86
TAIR|locus:2147097 AT5G20860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 748 (268.4 bits), Expect = 2.0e-115, Sum P(2) = 2.0e-115
 Identities = 147/249 (59%), Positives = 177/249 (71%)

Query:   270 RTNKDGITLI-GDGKYTTIITGDDNARRGTSMPATATFS---DGFIARDIGFHNTAGPQG 325
             RT  + +T   G+GK  T+I GDD+A  GTS+P TAT +   DGFIARDIG  N AGP+G
Sbjct:   241 RTVMEAVTAAHGNGKDLTVIVGDDSATGGTSVPDTATMTVTGDGFIARDIGIKNIAGPRG 300

Query:   326 EQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFIFGNAAAVFQNCY 385
              QA+AL++ SD +V YRCSI+GYQDTLYA ALRQFYR+ DIYGTIDFIFGNAAAVFQ+C 
Sbjct:   301 HQAIALSITSDQSVLYRCSISGYQDTLYAAALRQFYRECDIYGTIDFIFGNAAAVFQSCN 360

Query:   386 LVLRRPKG--SYNAITANGRTDPGQNTGFSLQNCKIAAGSDYAPVKHKYNSYLGRPWKQY 443
             + LRRP G  +YN I ANGRTD  QNTGF+L +C+I   SD +PVKHKY+SYLGRPW++Y
Sbjct:   361 IFLRRPHGVKAYNVILANGRTDQRQNTGFALHSCRIRTDSDLSPVKHKYSSYLGRPWRKY 420

Query:   444 SRAVVMQXXXXXXXXXXGWVEWPGAGGYA-NTLYFAEYANVGPGAATSNRVKWPGFHVIG 502
             SRA+VM+          GW  W  +G     TLYF E+ N GP A  S RV W GFH IG
Sbjct:   421 SRAIVMESYIDDAIAEGGWAGWLDSGDEVLKTLYFGEFKNYGPKARISKRVTWEGFHSIG 480

Query:   503 PDVAVKFTV 511
              + A  F+V
Sbjct:   481 FEEANYFSV 489
GO:0004857 "enzyme inhibitor activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0005618 "cell wall" evidence=IEA
GO:0009505 "plant-type cell wall" evidence=ISS
GO:0030599 "pectinesterase activity" evidence=IEA;ISS
GO:0042545 "cell wall modification" evidence=IEA
TAIR|locus:2050941 AT2G45220 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154277 PMEPCRF "pectin methylesterase PCR fragment F" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082951 AT3G49220 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200076 PMEPCRA "methylesterase PCR A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077710 PME61 "pectin methylesterase 61" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2153112 AT5G51490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2153127 AT5G51500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2053728 ATPMEPCRD [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101836 AT3G60730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q3E989PME54_ARATH3, ., 1, ., 1, ., 1, 10.48460.87400.9082yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.1.110.914
3rd Layer3.1.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query532
PLN02698497 PLN02698, PLN02698, Probable pectinesterase/pectin 0.0
pfam01095298 pfam01095, Pectinesterase, Pectinesterase 1e-157
PLN02301548 PLN02301, PLN02301, pectinesterase/pectinesterase 1e-154
PLN02484587 PLN02484, PLN02484, probable pectinesterase/pectin 1e-145
PLN02170529 PLN02170, PLN02170, probable pectinesterase/pectin 1e-145
PLN02468565 PLN02468, PLN02468, putative pectinesterase/pectin 1e-139
PLN02314586 PLN02314, PLN02314, pectinesterase 1e-138
PLN02713566 PLN02713, PLN02713, Probable pectinesterase/pectin 1e-133
PLN02201520 PLN02201, PLN02201, probable pectinesterase/pectin 1e-133
PLN02745596 PLN02745, PLN02745, Putative pectinesterase/pectin 1e-132
PLN02916502 PLN02916, PLN02916, pectinesterase family protein 1e-130
PLN02506537 PLN02506, PLN02506, putative pectinesterase/pectin 1e-126
PLN02416541 PLN02416, PLN02416, probable pectinesterase/pectin 1e-123
PLN02990572 PLN02990, PLN02990, Probable pectinesterase/pectin 1e-120
PLN02313587 PLN02313, PLN02313, Pectinesterase/pectinesterase 1e-119
PLN02995539 PLN02995, PLN02995, Probable pectinesterase/pectin 1e-119
PLN03043538 PLN03043, PLN03043, Probable pectinesterase/pectin 1e-119
PLN02933530 PLN02933, PLN02933, Probable pectinesterase/pectin 1e-117
PLN02488509 PLN02488, PLN02488, probable pectinesterase/pectin 1e-115
PLN02217 670 PLN02217, PLN02217, probable pectinesterase/pectin 1e-111
PLN02708553 PLN02708, PLN02708, Probable pectinesterase/pectin 7e-97
PLN02197588 PLN02197, PLN02197, pectinesterase 6e-81
PLN02432293 PLN02432, PLN02432, putative pectinesterase 8e-58
PLN02497331 PLN02497, PLN02497, probable pectinesterase 3e-56
PLN02682369 PLN02682, PLN02682, pectinesterase family protein 1e-52
PLN02665366 PLN02665, PLN02665, pectinesterase family protein 3e-52
PLN02773317 PLN02773, PLN02773, pectinesterase 5e-50
PLN02671359 PLN02671, PLN02671, pectinesterase 1e-48
PLN02304379 PLN02304, PLN02304, probable pectinesterase 2e-47
PLN02634359 PLN02634, PLN02634, probable pectinesterase 9e-44
PLN02480343 PLN02480, PLN02480, Probable pectinesterase 1e-40
PLN02176340 PLN02176, PLN02176, putative pectinesterase 8e-36
COG4677405 COG4677, PemB, Pectin methylesterase [Carbohydrate 5e-30
smart00856148 smart00856, PMEI, Plant invertase/pectin methylest 1e-24
pfam04043145 pfam04043, PMEI, Plant invertase/pectin methyleste 1e-22
TIGR01614178 TIGR01614, PME_inhib, pectinesterase inhibitor dom 2e-14
PRK10531422 PRK10531, PRK10531, acyl-CoA thioesterase; Provisi 4e-14
>gnl|CDD|178301 PLN02698, PLN02698, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information 
 Score =  699 bits (1806), Expect = 0.0
 Identities = 315/529 (59%), Positives = 373/529 (70%), Gaps = 41/529 (7%)

Query: 9   IILLWLLSASMSWGAMHSNNYQNKIQKECSFTRFPILCVQTLMGFESTKHQQHIHLMSAL 68
           +++ W+L AS          YQN++Q+ECSFT++P LCVQTL G         + ++S L
Sbjct: 4   MVIFWVLGASS---RNMPFAYQNEVQRECSFTKYPSLCVQTLRGLRHDG----VDIVSVL 56

Query: 69  VNKSIAETKLPTSYFSNFSSQLLAKDFQGVRAVTDHCEEMMSMSLKRLEKSLLALQNSPT 128
           VNK+I+ET LP S     S QL  ++     +V+D CE +M MSLKRL +SLLAL+ S  
Sbjct: 57  VNKTISETNLPLSSSMGSSYQLSLEEATYTPSVSDSCERLMKMSLKRLRQSLLALKGSSR 116

Query: 129 KNKDDIQTWLGAALTFQQTCKDSVNSLGLSERNEVIKKISQKMDYLSQLTSNPLALVNRI 188
           KNK DIQTWL AALTFQQ CKDS+           I +ISQKMD+LS+L SN LALVNRI
Sbjct: 117 KNKHDIQTWLSAALTFQQACKDSIVDSTGYSGTSAISQISQKMDHLSRLVSNSLALVNRI 176

Query: 189 ARASYPKNSTYNRRLDEEQGDFPNWVSAKNRKLLQAPRINANVIVAQDGTGNYRTVSEAI 248
                PK  T +R L EEQ  FP WVSA +RKLLQ   I AN +VA+DGTGNY TVSEAI
Sbjct: 177 TPN--PKPKTKSRGLSEEQ-VFPRWVSAGDRKLLQGRTIKANAVVAKDGTGNYETVSEAI 233

Query: 249 SAASGNRFVIYVKAGVYKEKIRTNKDGITLIGDGKYTTIITGDDNARRGTSMPATATFS- 307
           +AA GN                           GKY+T+I GDD+   GTS+P TATF+ 
Sbjct: 234 TAAHGNH--------------------------GKYSTVIVGDDSVTGGTSVPDTATFTI 267

Query: 308 --DGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTD 365
             DGFIARDIGF N AGP+GEQA+AL++ SDH+V YRCSIAGYQDTLYA ALRQFYR+ D
Sbjct: 268 TGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQDTLYAAALRQFYRECD 327

Query: 366 IYGTIDFIFGNAAAVFQNCYLVLRRPKG-SYNAITANGRTDPGQNTGFSLQNCKIAAGSD 424
           IYGTIDFIFGNAAAVFQNCYL LRRP G SYN I ANGR+DPGQNTGFSLQ+C+I   SD
Sbjct: 328 IYGTIDFIFGNAAAVFQNCYLFLRRPHGKSYNVILANGRSDPGQNTGFSLQSCRIRTSSD 387

Query: 425 YAPVKHKYNSYLGRPWKQYSRAVVMQSSIDDSISSSGWVEWPGAGGYA-NTLYFAEYANV 483
           ++PVKH Y+SYLGRPWK+YSRA+VM+S IDD+I+  GW+EWPG+G     +LYFAEY+N 
Sbjct: 388 FSPVKHSYSSYLGRPWKKYSRAIVMESYIDDAIAERGWIEWPGSGSEVLKSLYFAEYSNY 447

Query: 484 GPGAATSNRVKWPGFHVIGPDVAVKFTVANFIAGTSWLPSTGVIFDGGL 532
           GPGA TS RV WPGFH+IG + A KFTV  FIAG SWLPSTGV F  GL
Sbjct: 448 GPGARTSKRVTWPGFHLIGFEEATKFTVVKFIAGESWLPSTGVKFISGL 496

Length = 497
>gnl|CDD|216297 pfam01095, Pectinesterase, Pectinesterase Back     alignment and domain information
>gnl|CDD|215170 PLN02301, PLN02301, pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178102 PLN02484, PLN02484, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215114 PLN02170, PLN02170, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178087 PLN02468, PLN02468, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215179 PLN02314, PLN02314, pectinesterase Back     alignment and domain information
>gnl|CDD|215383 PLN02713, PLN02713, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177852 PLN02201, PLN02201, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178346 PLN02745, PLN02745, Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178504 PLN02916, PLN02916, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|215280 PLN02506, PLN02506, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178037 PLN02416, PLN02416, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215535 PLN02990, PLN02990, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177947 PLN02313, PLN02313, Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178574 PLN02995, PLN02995, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178606 PLN03043, PLN03043, Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>gnl|CDD|178521 PLN02933, PLN02933, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178106 PLN02488, PLN02488, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177848 PLN02197, PLN02197, pectinesterase Back     alignment and domain information
>gnl|CDD|178051 PLN02432, PLN02432, putative pectinesterase Back     alignment and domain information
>gnl|CDD|178113 PLN02497, PLN02497, probable pectinesterase Back     alignment and domain information
>gnl|CDD|215367 PLN02682, PLN02682, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|215357 PLN02665, PLN02665, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178372 PLN02773, PLN02773, pectinesterase Back     alignment and domain information
>gnl|CDD|178276 PLN02671, PLN02671, pectinesterase Back     alignment and domain information
>gnl|CDD|215173 PLN02304, PLN02304, probable pectinesterase Back     alignment and domain information
>gnl|CDD|215340 PLN02634, PLN02634, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178098 PLN02480, PLN02480, Probable pectinesterase Back     alignment and domain information
>gnl|CDD|215117 PLN02176, PLN02176, putative pectinesterase Back     alignment and domain information
>gnl|CDD|227022 COG4677, PemB, Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|214860 smart00856, PMEI, Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>gnl|CDD|217858 pfam04043, PMEI, Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>gnl|CDD|233492 TIGR01614, PME_inhib, pectinesterase inhibitor domain Back     alignment and domain information
>gnl|CDD|236709 PRK10531, PRK10531, acyl-CoA thioesterase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 532
PLN02484587 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02468565 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02313587 Pectinesterase/pectinesterase inhibitor 100.0
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02314586 pectinesterase 100.0
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02416541 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02301548 pectinesterase/pectinesterase inhibitor 100.0
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 100.0
PLN02197588 pectinesterase 100.0
PLN02506537 putative pectinesterase/pectinesterase inhibitor 100.0
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 100.0
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02488509 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02201520 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02170529 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02916502 pectinesterase family protein 100.0
PLN02671359 pectinesterase 100.0
PLN02682369 pectinesterase family protein 100.0
PLN02497331 probable pectinesterase 100.0
PLN02176340 putative pectinesterase 100.0
PLN02304379 probable pectinesterase 100.0
PLN02634359 probable pectinesterase 100.0
PLN02665366 pectinesterase family protein 100.0
PLN02773317 pectinesterase 100.0
PLN02432293 putative pectinesterase 100.0
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 100.0
PLN02480343 Probable pectinesterase 100.0
PRK10531422 acyl-CoA thioesterase; Provisional 100.0
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 100.0
TIGR01614178 PME_inhib pectinesterase inhibitor domain. This mo 99.95
smart00856148 PMEI Plant invertase/pectin methylesterase inhibit 99.95
PF04043152 PMEI: Plant invertase/pectin methylesterase inhibi 99.92
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.36
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.61
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.53
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 98.22
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.1
PLN02188404 polygalacturonase/glycoside hydrolase family prote 97.27
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 97.25
PLN02218431 polygalacturonase ADPG 96.88
PRK10531422 acyl-CoA thioesterase; Provisional 96.87
PLN02793443 Probable polygalacturonase 96.76
PLN03003456 Probable polygalacturonase At3g15720 96.74
KOG1777 625 consensus Putative Zn-finger protein [General func 96.73
PLN02155394 polygalacturonase 96.52
PLN02480343 Probable pectinesterase 96.26
PLN03010409 polygalacturonase 96.23
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 95.79
PLN02773317 pectinesterase 95.78
PLN02176340 putative pectinesterase 95.4
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 95.19
PLN02497331 probable pectinesterase 95.13
PLN02432293 putative pectinesterase 94.9
PLN02634359 probable pectinesterase 94.59
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 94.49
PLN02671359 pectinesterase 94.47
PLN02665366 pectinesterase family protein 94.46
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 94.33
PLN02682369 pectinesterase family protein 94.2
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 94.1
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 94.08
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 93.92
PLN02506537 putative pectinesterase/pectinesterase inhibitor 93.88
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 93.82
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 93.73
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 93.71
PLN02170529 probable pectinesterase/pectinesterase inhibitor 93.64
PLN02416541 probable pectinesterase/pectinesterase inhibitor 93.58
PLN02197588 pectinesterase 93.54
PLN02468565 putative pectinesterase/pectinesterase inhibitor 93.49
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 93.46
PLN02201520 probable pectinesterase/pectinesterase inhibitor 93.45
PLN02314586 pectinesterase 93.44
PLN02488509 probable pectinesterase/pectinesterase inhibitor 92.9
PLN02484587 probable pectinesterase/pectinesterase inhibitor 92.83
PLN02313587 Pectinesterase/pectinesterase inhibitor 92.8
PLN02916502 pectinesterase family protein 92.6
PLN02301548 pectinesterase/pectinesterase inhibitor 92.56
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 92.34
PLN02304379 probable pectinesterase 92.08
smart00656190 Amb_all Amb_all domain. 92.01
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 90.57
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 90.1
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 87.47
PLN02188404 polygalacturonase/glycoside hydrolase family prote 85.18
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 83.71
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 83.3
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 81.86
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 81.35
KOG173397 consensus Mitochondrial import inner membrane tran 81.26
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 80.97
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 80.6
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information 
Probab=100.00  E-value=2.6e-130  Score=1065.67  Aligned_cols=496  Identities=44%  Similarity=0.753  Sum_probs=451.4

Q ss_pred             hhhHHHhhcCCCCCcccHHHhhcccCCCCCCCHHHHHHHHHHHHHHHhhchhHHHHhhhhhhhccCCcchHHHHHHHHHH
Q 009545           29 YQNKIQKECSFTRFPILCVQTLMGFESTKHQQHIHLMSALVNKSIAETKLPTSYFSNFSSQLLAKDFQGVRAVTDHCEEM  108 (532)
Q Consensus        29 ~~~~I~~~C~~T~yp~lC~~sL~~~p~s~~~d~~~L~~~ai~~a~~~a~~~~~~i~~l~~~~~~~~~~~~~~aL~dC~e~  108 (532)
                      ++..|+++|+.|+||++|+++|+++|.+...+|++|++++|++++++++++......+..   ..++++++.||+||+|+
T Consensus        72 ~~~~Iks~C~~T~YP~lC~sSLs~~p~s~~~~p~~L~~~slnvtl~~~~~a~~~s~~l~~---~~~~~r~k~AL~DClEL  148 (587)
T PLN02484         72 PTQAISKTCSKTRFPNLCVDSLLDFPGSLTASESDLIHISFNMTLQHFSKALYLSSTISY---VQMPPRVRSAYDSCLEL  148 (587)
T ss_pred             hhHHHHHhccCCCChHHHHHHHhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhh---ccCCHHHHHHHHHHHHH
Confidence            456999999999999999999999998777899999999999999999988766554433   46788999999999999


Q ss_pred             HHHHHHHHHHHHHHhhc-CCCCChhHHHHHHHHHHhhhhHHHhhhhcCCCCcchhhHhHHHHHHHHHHHHhhhhhHHhhh
Q 009545          109 MSMSLKRLEKSLLALQN-SPTKNKDDIQTWLGAALTFQQTCKDSVNSLGLSERNEVIKKISQKMDYLSQLTSNPLALVNR  187 (532)
Q Consensus       109 y~~a~d~L~~a~~~l~~-~~~~~~~d~~twLSAAlt~~~TC~Dgf~e~g~~~~~~~~~~l~~~~~~l~~L~snaLai~~~  187 (532)
                      |++|+|+|++|+.+|.. .....++|++|||||||||++||+|||++.  .. ++++++|...+.++.||+||||||++.
T Consensus       149 lddAid~L~~Sl~~l~~~~~~~~~~DvkTWLSAALTnq~TClDGF~e~--~~-~~vk~~m~~~l~~l~~LtSNALAIi~~  225 (587)
T PLN02484        149 LDDSVDALSRALSSVVPSSGGGSPQDVVTWLSAALTNHDTCTEGFDGV--NG-GEVKDQMTGALKDLSELVSNCLAIFSA  225 (587)
T ss_pred             HHHHHHHHHHHHHHHhccccccchHHHHhHHHHHhccHhhHHHHhhcc--cc-cchHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999985 113568999999999999999999999854  21 268999999999999999999999999


Q ss_pred             hhccCCCC-CCCCCCCCCcc--cCCCCccccccccccccCCC--CCceEEEcCCCCCCcccHHHHHHHcc---CCceEEE
Q 009545          188 IARASYPK-NSTYNRRLDEE--QGDFPNWVSAKNRKLLQAPR--INANVIVAQDGTGNYRTVSEAISAAS---GNRFVIY  259 (532)
Q Consensus       188 l~~~~~~~-~~~~~r~ll~~--~~~~p~w~~~~~~~~l~~~~--~~~~~~V~~dg~g~f~TIq~Ai~aa~---~~~~~I~  259 (532)
                      +....+++ +..++|||+++  .++||.|++..+||||+.+.  ++++++|++||+|+|+|||+||+++|   ..|++|+
T Consensus       226 ~~~~~~~~~~~~~~r~l~~~~~~~~~P~W~~~~dr~ll~~~~~~~~~~~vVa~dGsG~f~TIq~Ai~a~P~~~~~r~vI~  305 (587)
T PLN02484        226 SNGGDFSGVPIQNRRRLLTEEEDISFPRWLGRRERELLGMPVSAIQADIIVSKDGNGTFKTISEAIKKAPEHSSRRTIIY  305 (587)
T ss_pred             cccccccccccccccccccccccccCCCCcChhhHHHhhcccccCCceEEECCCCCCCcccHHHHHHhccccCCCcEEEE
Confidence            88643333 11347899975  46999999999999999865  88999999999999999999999999   5689999


Q ss_pred             EeCceeEE-eEE--ecCCCeEEEecCCCceEEecccCCCCCCCCCceeEee---CCeEEeeeEEEeCCCCCCCceeEEEe
Q 009545          260 VKAGVYKE-KIR--TNKDGITLIGDGKYTTIITGDDNARRGTSMPATATFS---DGFIARDIGFHNTAGPQGEQALALNV  333 (532)
Q Consensus       260 I~~G~Y~E-~v~--~~k~~itl~G~g~~~tiI~~~~~~~~g~~t~~satv~---~~f~~~nlt~~Nt~g~~~~qA~Al~~  333 (532)
                      |+||+|+| +|.  .+|+||+|+|+|+++|||+++++..++++|+.||||.   ++|+++||||+|++|+.++|||||++
T Consensus       306 Ik~G~Y~E~~v~i~~~k~ni~l~G~g~~~TiIt~~~~~~~~~~t~~saT~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv  385 (587)
T PLN02484        306 VKAGRYEENNLKVGRKKTNLMFIGDGKGKTVITGGKSIFDNLTTFHTASFAATGAGFIARDMTFENWAGPAKHQAVALRV  385 (587)
T ss_pred             EeCCEEEEEEEEECCCCceEEEEecCCCCeEEecCCcccCCCcccceEEEEEEcCCEEEEeeEEEECCCCCCCceEEEEe
Confidence            99999999 487  5889999999999999999999888888999999998   99999999999999998999999999


Q ss_pred             ccCcEEEEeceeecccceEeecccceeeeccEEecccceEeCCCceeEEeEEEEEecCC-CCccEEEecCCCCCCCCeeE
Q 009545          334 ASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFIFGNAAAVFQNCYLVLRRPK-GSYNAITANGRTDPGQNTGF  412 (532)
Q Consensus       334 ~~d~~~~~~c~~~g~QDTl~~~~~r~~f~~c~I~G~vDfIfG~~~a~f~~c~i~~~~~~-~~~~~itA~~r~~~~~~~G~  412 (532)
                      .||+++||||+|+|||||||++.+||||++|+|+|+||||||+|+++||+|+|+++++. ++.|+||||+|+++++++||
T Consensus       386 ~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avfq~C~i~~~~~~~~~~~~ITAq~r~~~~~~~G~  465 (587)
T PLN02484        386 GADHAVVYRCNIIGYQDTLYVHSNRQFFRECDIYGTVDFIFGNAAVVLQNCSIYARKPMAQQKNTITAQNRKDPNQNTGI  465 (587)
T ss_pred             cCCcEEEEeeeEeccCcccccCCCcEEEEecEEEeccceecccceeEEeccEEEEecCCCCCceEEEecCCCCCCCCcEE
Confidence            99999999999999999999999999999999999999999999999999999999875 56799999999999999999


Q ss_pred             EEEcCEEeecCCCCCccCcceeeeeccCCCCCceEEEcccCCCccCCCCCccCCCCCCCC-cceEEEEecccCCCCCCCC
Q 009545          413 SLQNCKIAAGSDYAPVKHKYNSYLGRPWKQYSRAVVMQSSIDDSISSSGWVEWPGAGGYA-NTLYFAEYANVGPGAATSN  491 (532)
Q Consensus       413 vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~~~~v~~~t~~~~~i~~~Gw~~w~~~~~~~-~~~~f~Ey~~~G~g~~~~~  491 (532)
                      ||+||+|++++++.+..+..++||||||++|+|||||+|+|+++|+|+||.+|  ++..+ ++++|+||+|+|||+++++
T Consensus       466 vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~ysrvV~~~s~i~~~I~p~GW~~W--~~~~~~~t~~y~Ey~n~GpGa~~~~  543 (587)
T PLN02484        466 SIHACRILAASDLAASKGSFPTYLGRPWKLYSRTVYMMSYMGDHIHPRGWLEW--NTTFALDTLYYGEYMNYGPGSGVGQ  543 (587)
T ss_pred             EEEeeEEecCCccccccCccceeccCCCCCCceEEEEecccCCeEcccccCCC--CCCCCCCceEEEEeccccCCCCcCC
Confidence            99999999998876655556799999999999999999999999999999999  77666 8999999999999999999


Q ss_pred             cccCCCccc-CCHHHHhcchhhccccCCCCCCCCCCCCCCCC
Q 009545          492 RVKWPGFHV-IGPDVAVKFTVANFIAGTSWLPSTGVIFDGGL  532 (532)
Q Consensus       492 R~~w~~~~~-l~~~~a~~~t~~~~~~g~~W~p~~~~~~~~~~  532 (532)
                      ||+|+++++ ++++||++|++.+||+|++|+|.|+|||.+||
T Consensus       544 Rv~w~~~~~~~~~~ea~~ft~~~fi~g~~W~~~~~vp~~~gl  585 (587)
T PLN02484        544 RVKWPGYRVITSTVEASKFTVAQFIYGSSWLPSTGVSFLAGL  585 (587)
T ss_pred             CccCccccccCCHHHHHhhhHHhhcCCCCcCCCCCCCcccCC
Confidence            999999875 57899999999999999999999999999997

>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR01614 PME_inhib pectinesterase inhibitor domain Back     alignment and domain information
>smart00856 PMEI Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>PF04043 PMEI: Plant invertase/pectin methylesterase inhibitor; InterPro: IPR006501 This entry represents a plant domain of about 200 amino acids, characterised by four conserved cysteine residues Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>KOG1777 consensus Putative Zn-finger protein [General function prediction only] Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>KOG1733 consensus Mitochondrial import inner membrane translocase, subunit TIM13 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query532
1xg2_A317 Crystal Structure Of The Complex Between Pectin Met 2e-85
1gq8_A319 Pectin Methylesterase From Carrot Length = 319 2e-77
1qjv_A342 Pectin Methylesterase Pema From Erwinia Chrysanthem 3e-19
2ntb_A342 Crystal Structure Of Pectin Methylesterase In Compl 1e-18
2nsp_A342 Crystal Structure Of Pectin Methylesterase D178a Mu 9e-18
3uw0_A364 Pectin Methylesterase From Yersinia Enterocolitica 1e-12
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein Length = 317 Back     alignment and structure 
Iteration: 1

 Score =  312 bits (800), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 169/317 (53%), Positives = 208/317 (65%), Gaps = 13/317 (4%)
Query: 227 INANVIVAQDGTGNYRTVSEAISAA---SGNRFVIYVKAGVYKEKIR--TNKDGITLIGD 281
           I AN +VAQDGTG+Y+T++EA++AA   S  R+VIYVK G YKE +   +NK  + ++GD
Sbjct: 1   IIANAVVAQDGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGD 60
Query: 282 GKYTTIITGDDNARRGTSMPATATFS---DGFIARDIGFHNTAGPQGEQALALNVASDHT 338
           G Y T ITG  N   G++   +AT +    GFI +DI   NTAGP  +QA+AL V +D +
Sbjct: 61  GMYATTITGSLNVVDGSTTFRSATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMS 120
Query: 339 VFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFIFGNAAAVFQNCYLVLRRPKGSY--N 396
           V  RC I  YQDTLYA + RQFYRD+ + GT+DFIFGNAA VFQ C LV R+P G Y  N
Sbjct: 121 VINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQLVARKP-GKYQQN 179
Query: 397 AITANGRTDPGQNTGFSLQNCKIAAGSDYAPVKHKYNSYLGRPWKQYSRAVVMQXXXXXX 456
            +TA GRTDP Q TG S+Q C I A SD  PV  ++ +YLGRPWK+YSR VVM+      
Sbjct: 180 MVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGL 239
Query: 457 XXXXGWVEWPGAGGYANTLYFAEYANVGPGAATSNRVKWPGFHVI-GPDVAVKFTVANFI 515
               GW EW G      TLY+ E+ N GPGA TS RVKWPG+HVI  P  A+ FTVA  I
Sbjct: 240 INPAGWAEWDGDFAL-KTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLI 298
Query: 516 AGTSWLPSTGVIFDGGL 532
            G SWL STGV +  GL
Sbjct: 299 QGGSWLRSTGVAYVDGL 315
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot Length = 319 Back     alignment and structure
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi Length = 342 Back     alignment and structure
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With Hexasaccharide V Length = 342 Back     alignment and structure
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In Complex With Hexasaccharide I Length = 342 Back     alignment and structure
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica Length = 364 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query532
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 1e-150
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 1e-149
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 1e-116
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 1e-114
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 1e-89
1xg2_B153 Pectinesterase inhibitor; protein-protein complex, 9e-26
1x91_A153 Invertase/pectin methylesterase inhibitor family p 4e-24
2cj4_A150 Invertase inhibitor; protein binding, four-helix b 2e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Length = 317 Back     alignment and structure
 Score =  432 bits (1113), Expect = e-150
 Identities = 170/316 (53%), Positives = 211/316 (66%), Gaps = 11/316 (3%)

Query: 227 INANVIVAQDGTGNYRTVSEAISAA---SGNRFVIYVKAGVYKEKIR--TNKDGITLIGD 281
           I AN +VAQDGTG+Y+T++EA++AA   S  R+VIYVK G YKE +   +NK  + ++GD
Sbjct: 1   IIANAVVAQDGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGD 60

Query: 282 GKYTTIITGDDNARRGTSMPATATF---SDGFIARDIGFHNTAGPQGEQALALNVASDHT 338
           G Y T ITG  N   G++   +AT      GFI +DI   NTAGP  +QA+AL V +D +
Sbjct: 61  GMYATTITGSLNVVDGSTTFRSATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMS 120

Query: 339 VFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFIFGNAAAVFQNCYLVLRRP-KGSYNA 397
           V  RC I  YQDTLYA + RQFYRD+ + GT+DFIFGNAA VFQ C LV R+P K   N 
Sbjct: 121 VINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQLVARKPGKYQQNM 180

Query: 398 ITANGRTDPGQNTGFSLQNCKIAAGSDYAPVKHKYNSYLGRPWKQYSRAVVMQSSIDDSI 457
           +TA GRTDP Q TG S+Q C I A SD  PV  ++ +YLGRPWK+YSR VVM+S +   I
Sbjct: 181 VTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGLI 240

Query: 458 SSSGWVEWPGAGGYANTLYFAEYANVGPGAATSNRVKWPGFHVI-GPDVAVKFTVANFIA 516
           + +GW EW G      TLY+ E+ N GPGA TS RVKWPG+HVI  P  A+ FTVA  I 
Sbjct: 241 NPAGWAEWDGDFAL-KTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQ 299

Query: 517 GTSWLPSTGVIFDGGL 532
           G SWL STGV +  GL
Sbjct: 300 GGSWLRSTGVAYVDGL 315
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Length = 319 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Length = 342 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Length = 364 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Length = 422 Back     alignment and structure
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis} Length = 153 Back     alignment and structure
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A Length = 153 Back     alignment and structure
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B* Length = 150 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query532
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 100.0
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 100.0
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 100.0
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 100.0
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 100.0
1xg2_B153 Pectinesterase inhibitor; protein-protein complex, 99.96
1x91_A153 Invertase/pectin methylesterase inhibitor family p 99.96
2cj4_A150 Invertase inhibitor; protein binding, four-helix b 99.96
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.54
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 99.29
2inu_A410 Insulin fructotransferase; right-handed parallel b 98.84
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.15
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 97.88
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 97.75
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 97.4
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 97.2
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 97.07
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.06
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 96.99
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 96.94
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 96.92
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 96.9
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 96.89
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 96.74
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 96.7
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 96.58
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 96.57
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 95.86
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 95.74
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 95.73
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 95.68
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 95.62
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 95.17
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 95.17
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 95.11
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 95.08
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 94.9
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 94.38
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 93.74
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 93.57
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 93.43
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 93.22
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 92.32
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 91.48
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 87.37
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 87.37
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 86.49
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 85.14
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 84.5
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 84.24
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 82.59
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 81.5
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
Probab=100.00  E-value=1.6e-88  Score=693.81  Aligned_cols=303  Identities=55%  Similarity=0.951  Sum_probs=285.0

Q ss_pred             CceEEEcCCCCCCcccHHHHHHHcc---CCceEEEEeCceeEEeEEec--CCCeEEEecCCCceEEecccCCCCCCCCCc
Q 009545          228 NANVIVAQDGTGNYRTVSEAISAAS---GNRFVIYVKAGVYKEKIRTN--KDGITLIGDGKYTTIITGDDNARRGTSMPA  302 (532)
Q Consensus       228 ~~~~~V~~dg~g~f~TIq~Ai~aa~---~~~~~I~I~~G~Y~E~v~~~--k~~itl~G~g~~~tiI~~~~~~~~g~~t~~  302 (532)
                      +++++|++||+|+|+|||+||++||   ..|++|+|+||+|+|+|.+.  |++|||+|+++++|+|+++.+..+|++|+.
T Consensus         2 ~~~i~V~~dGsg~f~TIq~AI~aap~~~~~~~~I~I~~G~Y~E~V~I~~~k~~Itl~G~g~~~tiI~~~~~~~~g~~t~~   81 (317)
T 1xg2_A            2 IANAVVAQDGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGDGMYATTITGSLNVVDGSTTFR   81 (317)
T ss_dssp             CCSEEECTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTSCSEEEEESCTTTEEEEECCCTTTTCCSGG
T ss_pred             CceEEECCCCCCCcccHHHHHhhcccCCCceEEEEEcCCEEeeeeecCCCCCcEEEEEcCCCCcEEEecccccCCCcccc
Confidence            5789999999999999999999999   45789999999999999976  889999999999999999998888899999


Q ss_pred             eeEee---CCeEEeeeEEEeCCCCCCCceeEEEeccCcEEEEeceeecccceEeecccceeeeccEEecccceEeCCCce
Q 009545          303 TATFS---DGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFIFGNAAA  379 (532)
Q Consensus       303 satv~---~~f~~~nlt~~Nt~g~~~~qA~Al~~~~d~~~~~~c~~~g~QDTl~~~~~r~~f~~c~I~G~vDfIfG~~~a  379 (532)
                      ++||.   ++|+++||||+|++++.++||+||++.+|++.|+||+|+|+|||||++.+||||++|+|+|+||||||+|++
T Consensus        82 satv~v~a~~f~~~~lt~~Nt~g~~~~qAvAl~v~~d~~~f~~c~f~g~QDTLy~~~~r~~~~~c~I~G~vDFIfG~~~a  161 (317)
T 1xg2_A           82 SATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAV  161 (317)
T ss_dssp             GCSEEECSTTCEEESCEEEECCCGGGCCCCSEEECCTTEEEESCEEECSTTCEEECSSEEEEESCEEEESSSCEEECCEE
T ss_pred             eeEEEEECCCEEEEEeEEecccCCccCceEEEEEeCCcEEEEEeEeCccccceeecCccEEEEeeEEEeceeEEcCCceE
Confidence            99988   999999999999999888999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEeEEEEEecCC-CCccEEEecCCCCCCCCeeEEEEcCEEeecCCCCCccCcceeeeeccCCCCCceEEEcccCCCccC
Q 009545          380 VFQNCYLVLRRPK-GSYNAITANGRTDPGQNTGFSLQNCKIAAGSDYAPVKHKYNSYLGRPWKQYSRAVVMQSSIDDSIS  458 (532)
Q Consensus       380 ~f~~c~i~~~~~~-~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~~~~v~~~t~~~~~i~  458 (532)
                      +||+|+|+++++. ++.++||||+|+++++++||||+||+|++++++.+.....++||||||++|+|+||++|+|+++|+
T Consensus       162 vf~~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~sr~v~~~t~~~~~I~  241 (317)
T 1xg2_A          162 VFQKCQLVARKPGKYQQNMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGLIN  241 (317)
T ss_dssp             EEESCEEEECCCSTTCCEEEEEECCCCTTSCCEEEEESCEEEECTTTGGGTTTSCEEEECCSSTTCEEEEESCEECTTBC
T ss_pred             EEeeeEEEEeccCCCCccEEEecCcCCCCCCcEEEEECCEEecCCCccccccceeEEeecccCCCceEEEEecccCCccc
Confidence            9999999999864 567899999999999999999999999999876554444589999999999999999999999999


Q ss_pred             CCCCccCCCCCCCC-cceEEEEecccCCCCCCCCcccCCCcccC-CHHHHhcchhhccccCCCCCCCCCCCCCCCC
Q 009545          459 SSGWVEWPGAGGYA-NTLYFAEYANVGPGAATSNRVKWPGFHVI-GPDVAVKFTVANFIAGTSWLPSTGVIFDGGL  532 (532)
Q Consensus       459 ~~Gw~~w~~~~~~~-~~~~f~Ey~~~G~g~~~~~R~~w~~~~~l-~~~~a~~~t~~~~~~g~~W~p~~~~~~~~~~  532 (532)
                      |+||.+|  +++.+ ++++|+||+|+|||+++++||+|+++++| +++||++|++.+||+|++|+|.++|||..||
T Consensus       242 p~GW~~w--~~~~~~~t~~~~Ey~n~GpGa~~~~Rv~w~~~~~l~~~~ea~~~t~~~~i~g~~W~p~~~~~~~~~~  315 (317)
T 1xg2_A          242 PAGWAEW--DGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQGGSWLRSTGVAYVDGL  315 (317)
T ss_dssp             TTCSCCS--STTTTTTTCEEEEESCBSTTCCCTTSCCCTTEEEECCHHHHGGGSHHHHSCTHHHHGGGCCCCCCSS
T ss_pred             ccccccC--CCCCCcCceEEEEEcCCCCCCCcccccccccccccCCHHHHHHhhHHhhcCCCCCcCCCCccccccc
Confidence            9999999  77666 89999999999999999999999998877 5799999999999999889999999999996
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis} Back     alignment and structure
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A Back     alignment and structure
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 532
d1gq8a_319 b.80.1.5 (A:) Pectin methylesterase PemA {Carrot ( 1e-128
d1qjva_342 b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia 5e-85
d1x91a_149 a.29.6.1 (A:) Pectin methylesterase inhibitor 1, P 2e-22
d2cj4a1147 a.29.6.1 (A:4-150) Invertase inhibitor {Common tob 5e-18
d1ru4a_400 b.80.1.9 (A:) Pectate transeliminase {Erwinia chry 2e-04
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Length = 319 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

 Score =  373 bits (960), Expect = e-128
 Identities = 161/320 (50%), Positives = 205/320 (64%), Gaps = 11/320 (3%)

Query: 223 QAPRINANVIVAQDGTGNYRTVSEAISAA---SGNRFVIYVKAGVYKEKIRTNKDG--IT 277
           ++  +  NV+VA DG+G+Y+TVSEA++AA   S  R+VI +KAGVY+E +   K    I 
Sbjct: 1   ESSTVGPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIM 60

Query: 278 LIGDGKYTTIITGDDNARRGTSMPATATF---SDGFIARDIGFHNTAGPQGEQALALNVA 334
            +GDG+ +TIIT   N + G++   +AT      GF+ARDI F NTAG    QA+AL V 
Sbjct: 61  FLGDGRTSTIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVG 120

Query: 335 SDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFIFGNAAAVFQNCYLVLRRP-KG 393
           SD + FYRC I  YQD+LY  + RQF+ +  I GT+DFIFGNAA V Q+C +  RRP  G
Sbjct: 121 SDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSG 180

Query: 394 SYNAITANGRTDPGQNTGFSLQNCKIAAGSDYAPVKHKYNSYLGRPWKQYSRAVVMQSSI 453
             N +TA GRTDP QNTG  +Q  +I A SD  PV+  + +YLGRPWK+YSR VVMQSSI
Sbjct: 181 QKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSI 240

Query: 454 DDSISSSGWVEWPGAGGYANTLYFAEYANVGPGAATSNRVKWPGFHVI-GPDVAVKFTVA 512
            + I+ +GW  W G     +TLY+ EY N G GAATS RV W GF VI     A  FT  
Sbjct: 241 TNVINPAGWFPWDGNFAL-DTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPG 299

Query: 513 NFIAGTSWLPSTGVIFDGGL 532
           +FIAG SWL +T   F  GL
Sbjct: 300 SFIAGGSWLKATTFPFSLGL 319
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Length = 342 Back     information, alignment and structure
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 149 Back     information, alignment and structure
>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 147 Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Length = 400 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query532
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 100.0
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 100.0
d2cj4a1147 Invertase inhibitor {Common tobacco (Nicotiana tab 99.95
d1x91a_149 Pectin methylesterase inhibitor 1, PMEI1 {Thale cr 99.95
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 98.95
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.41
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 98.01
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 97.3
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 97.04
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 96.98
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 96.93
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 96.45
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 96.2
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 95.8
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 95.71
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 95.55
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 94.57
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 94.46
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 93.6
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 93.11
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 92.34
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 90.06
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

Probab=100.00  E-value=9.9e-93  Score=719.79  Aligned_cols=307  Identities=52%  Similarity=0.903  Sum_probs=289.1

Q ss_pred             CCCCCceEEEcCCCCCCcccHHHHHHHcc---CCceEEEEeCceeEEeEEe--cCCCeEEEecCCCceEEecccCCCCCC
Q 009545          224 APRINANVIVAQDGTGNYRTVSEAISAAS---GNRFVIYVKAGVYKEKIRT--NKDGITLIGDGKYTTIITGDDNARRGT  298 (532)
Q Consensus       224 ~~~~~~~~~V~~dg~g~f~TIq~Ai~aa~---~~~~~I~I~~G~Y~E~v~~--~k~~itl~G~g~~~tiI~~~~~~~~g~  298 (532)
                      ++..+++++|++||+|||+|||+||+++|   ..|++|+|+||+|+|+|++  +|++|||+|+|++.|+|+++.+..++.
T Consensus         2 ~~~~~p~i~V~~dGsGdf~TIq~AIda~p~~~~~~~~I~I~~G~Y~E~V~I~~~k~~itl~G~g~~~tiIt~~~~~~~~~   81 (319)
T d1gq8a_           2 SSTVGPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNVQDGS   81 (319)
T ss_dssp             CCSSCCSEEECTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTCCSEEEEESCTTTEEEEECCCTTTTC
T ss_pred             CCcCCCCEEECCCCCCCccCHHHHHhhCccCCCCcEEEEEcCceEEEEEEECCCCCeEEEEEcCCCCcEEEecccccCCC
Confidence            34478999999999999999999999999   5789999999999999995  889999999999999999999988888


Q ss_pred             CCCceeEee---CCeEEeeeEEEeCCCCCCCceeEEEeccCcEEEEeceeecccceEeecccceeeeccEEecccceEeC
Q 009545          299 SMPATATFS---DGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFIFG  375 (532)
Q Consensus       299 ~t~~satv~---~~f~~~nlt~~Nt~g~~~~qA~Al~~~~d~~~~~~c~~~g~QDTl~~~~~r~~f~~c~I~G~vDfIfG  375 (532)
                      +|+.++||.   ++|+++||||+|++++.++|||||++.+||++|++|+|+|||||||++.|||||++|+|+|+||||||
T Consensus        82 ~t~~sat~~v~~~~f~a~nitf~Nt~g~~~~QAvAl~v~gd~~~fy~c~f~G~QDTL~~~~gr~yf~~c~IeG~vDFIfG  161 (319)
T d1gq8a_          82 TTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFG  161 (319)
T ss_dssp             CTGGGCSEEECSTTCEEEEEEEEECCCGGGCCCCSEEECCTTEEEEEEEEECSTTCEEECSSEEEEESCEEEESSSCEEE
T ss_pred             ccccccceeeecCCeEEEeeEEEeCCCCCCCcEEEEEecCcceEEEcceecccCCeeEECCCCEEEEeeEEEeeccEEec
Confidence            999999998   99999999999999988899999999999999999999999999999999999999999999999999


Q ss_pred             CCceeEEeEEEEEecCC-CCccEEEecCCCCCCCCeeEEEEcCEEeecCCCCCccCcceeeeeccCCCCCceEEEcccCC
Q 009545          376 NAAAVFQNCYLVLRRPK-GSYNAITANGRTDPGQNTGFSLQNCKIAAGSDYAPVKHKYNSYLGRPWKQYSRAVVMQSSID  454 (532)
Q Consensus       376 ~~~a~f~~c~i~~~~~~-~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~~~~v~~~t~~~  454 (532)
                      +|+++||+|+|+++++. ++.++||||+|+++.+++||||+||+|++++++.+.....++||||||++++||||++|+|+
T Consensus       162 ~~~a~f~~c~i~~~~~~~~~~~~itA~~r~~~~~~~Gfvf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~s~vvf~~t~l~  241 (319)
T d1gq8a_         162 NAAVVLQDCDIHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSIT  241 (319)
T ss_dssp             SCEEEEESCEEEECCCSTTCCEEEEEECCCSTTCCCEEEEESCEEEECTTTGGGGGGSCEEEECCSSTTCEEEEESCEEC
T ss_pred             CceeEeecceeeeecCCCCCceEEEEcCcCCCCCCcEEEEEeeEEeCCCCccccccccceeccCCCCCcceEEEEecccc
Confidence            99999999999999765 56789999999999999999999999999988766555668999999999999999999999


Q ss_pred             CccCCCCCccCCCCCCCC-cceEEEEecccCCCCCCCCcccCCCcc-cCCHHHHhcchhhccccCCCCCCCCCCCCCCCC
Q 009545          455 DSISSSGWVEWPGAGGYA-NTLYFAEYANVGPGAATSNRVKWPGFH-VIGPDVAVKFTVANFIAGTSWLPSTGVIFDGGL  532 (532)
Q Consensus       455 ~~i~~~Gw~~w~~~~~~~-~~~~f~Ey~~~G~g~~~~~R~~w~~~~-~l~~~~a~~~t~~~~~~g~~W~p~~~~~~~~~~  532 (532)
                      ++|.|+||.+|  ++... ++++|+||+|+|||+++++||+|++++ +|+++||++|+..+||+|++|+|.++|||.+||
T Consensus       242 ~~I~p~GW~~w--~~~~~~~t~~f~Ey~n~GpGa~~s~Rv~w~~~~~~l~~~ea~~ft~~~fi~G~~Wl~~t~~p~~~~l  319 (319)
T d1gq8a_         242 NVINPAGWFPW--DGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKATTFPFSLGL  319 (319)
T ss_dssp             TTBCTTCCCCS--STTTTTTTCEEEEESCBSGGGCCTTCCCCTTEEECCCHHHHHTTSHHHHSCGGGTSGGGTSCCCCCC
T ss_pred             ccccccccccc--CCCCccCceEEEEEeccCCCcCcCCcccccceeeeCCHHHHHhhhHHhhcCCCcccccCCCccCCCC
Confidence            99999999999  77666 899999999999999999999999865 679999999999999999889999999999997
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure