Query 009546
Match_columns 532
No_of_seqs 244 out of 1544
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 14:26:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009546.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009546hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0676 Actin and related prot 100.0 1.3E-71 2.8E-76 568.5 23.1 359 17-516 11-372 (372)
2 PTZ00452 actin; Provisional 100.0 7.4E-71 1.6E-75 578.1 29.4 364 17-516 9-375 (375)
3 PTZ00466 actin-like protein; P 100.0 2.8E-70 6.1E-75 574.3 29.6 362 17-516 16-380 (380)
4 PTZ00281 actin; Provisional 100.0 4.3E-69 9.3E-74 565.7 29.3 364 17-516 10-376 (376)
5 PTZ00004 actin-2; Provisional 100.0 9.2E-67 2E-71 548.6 29.0 364 18-516 11-378 (378)
6 KOG0679 Actin-related protein 100.0 8E-67 1.7E-71 518.9 22.5 379 18-516 16-426 (426)
7 KOG0797 Actin-related protein 100.0 2.2E-66 4.7E-71 529.4 19.5 483 1-516 74-615 (618)
8 PTZ00280 Actin-related protein 100.0 1.7E-64 3.7E-69 537.7 28.8 373 17-514 8-408 (414)
9 KOG0677 Actin-related protein 100.0 2.1E-65 4.5E-70 484.7 15.3 365 17-513 8-385 (389)
10 PF00022 Actin: Actin; InterP 100.0 2.3E-63 5E-68 525.8 18.1 366 18-516 9-393 (393)
11 smart00268 ACTIN Actin. ACTIN 100.0 4.2E-60 9.1E-65 497.8 29.7 364 18-516 6-373 (373)
12 cd00012 ACTIN Actin; An ubiqui 100.0 4.8E-58 1E-62 481.9 29.4 365 18-514 4-371 (371)
13 COG5277 Actin and related prot 100.0 3.4E-57 7.4E-62 478.2 25.1 403 17-516 10-444 (444)
14 KOG0680 Actin-related protein 100.0 7.5E-55 1.6E-59 423.8 23.6 362 80-516 17-399 (400)
15 KOG0678 Actin-related protein 100.0 2.3E-46 4.9E-51 365.1 9.4 376 18-513 9-407 (415)
16 KOG0681 Actin-related protein 100.0 7.1E-41 1.5E-45 344.8 16.9 364 113-521 67-645 (645)
17 PRK13930 rod shape-determining 100.0 8.2E-28 1.8E-32 249.2 17.2 275 110-489 45-327 (335)
18 TIGR00904 mreB cell shape dete 100.0 1.5E-27 3.3E-32 247.2 17.8 274 110-488 43-325 (333)
19 PRK13927 rod shape-determining 99.9 7.4E-27 1.6E-31 242.1 15.9 272 110-488 42-322 (334)
20 PRK13929 rod-share determining 99.9 4.3E-25 9.3E-30 228.9 17.2 264 111-487 42-323 (335)
21 PRK13928 rod shape-determining 99.9 4.3E-23 9.2E-28 214.2 16.7 271 110-488 40-321 (336)
22 PF06723 MreB_Mbl: MreB/Mbl pr 99.9 7.1E-21 1.5E-25 194.6 17.8 271 109-487 37-318 (326)
23 COG1077 MreB Actin-like ATPase 99.6 3.6E-15 7.8E-20 148.3 14.2 276 108-487 43-328 (342)
24 TIGR02529 EutJ ethanolamine ut 99.4 4.8E-12 1E-16 125.2 18.2 135 130-297 28-165 (239)
25 PRK15080 ethanolamine utilizat 99.2 3.3E-10 7.2E-15 114.0 16.2 137 127-297 52-192 (267)
26 PRK09472 ftsA cell division pr 98.7 6.8E-08 1.5E-12 103.5 11.8 92 190-300 168-264 (420)
27 TIGR01174 ftsA cell division p 98.7 2.9E-07 6.2E-12 97.1 15.4 88 196-301 165-257 (371)
28 CHL00094 dnaK heat shock prote 98.7 3.9E-07 8.4E-12 102.4 16.6 91 177-268 138-236 (621)
29 PRK00290 dnaK molecular chaper 98.6 5.9E-07 1.3E-11 101.1 14.9 91 177-268 136-234 (627)
30 PTZ00400 DnaK-type molecular c 98.6 1.4E-06 3.1E-11 98.4 17.7 92 177-269 177-276 (663)
31 TIGR01991 HscA Fe-S protein as 98.6 4.6E-07 1E-11 101.3 13.5 93 177-270 132-232 (599)
32 PTZ00186 heat shock 70 kDa pre 98.6 6.3E-07 1.4E-11 100.9 14.2 91 177-268 163-261 (657)
33 PLN03184 chloroplast Hsp70; Pr 98.5 4.5E-06 9.7E-11 94.5 18.3 92 177-269 175-274 (673)
34 TIGR02350 prok_dnaK chaperone 98.5 1.7E-06 3.7E-11 96.9 14.5 91 177-268 133-232 (595)
35 PRK13411 molecular chaperone D 98.4 2.4E-06 5.1E-11 96.5 14.8 92 177-269 136-236 (653)
36 PRK05183 hscA chaperone protei 98.4 2.5E-06 5.5E-11 95.7 14.7 93 177-270 152-252 (616)
37 PRK13410 molecular chaperone D 98.4 3.3E-06 7.3E-11 95.4 14.4 91 177-268 138-236 (668)
38 PRK01433 hscA chaperone protei 98.4 7.3E-06 1.6E-10 91.4 16.2 93 177-270 144-244 (595)
39 PTZ00009 heat shock 70 kDa pro 98.4 6.8E-06 1.5E-10 92.9 16.1 91 177-268 143-243 (653)
40 PRK11678 putative chaperone; P 98.3 1.5E-05 3.3E-10 85.9 17.4 86 177-264 152-260 (450)
41 COG0849 ftsA Cell division ATP 98.2 7.3E-06 1.6E-10 86.8 11.0 91 192-300 168-263 (418)
42 COG0443 DnaK Molecular chapero 98.1 2.2E-05 4.7E-10 87.3 12.2 151 111-268 51-221 (579)
43 TIGR01175 pilM type IV pilus a 98.0 9.5E-05 2.1E-09 77.1 14.0 89 190-297 145-245 (348)
44 PF11104 PilM_2: Type IV pilus 97.6 0.00046 9.9E-09 72.0 11.5 128 149-296 86-236 (340)
45 PRK13917 plasmid segregation p 97.4 0.001 2.3E-08 69.4 11.1 69 201-269 151-232 (344)
46 PF00012 HSP70: Hsp70 protein; 97.0 0.0026 5.6E-08 71.4 9.8 92 177-269 138-238 (602)
47 TIGR03739 PRTRC_D PRTRC system 96.8 0.0059 1.3E-07 63.1 9.7 70 201-270 137-215 (320)
48 COG4972 PilM Tfp pilus assembl 96.4 0.2 4.3E-06 51.2 17.1 79 187-267 147-236 (354)
49 KOG0100 Molecular chaperones G 95.8 0.083 1.8E-06 55.0 10.8 88 177-265 175-271 (663)
50 PRK10719 eutA reactivating fac 95.0 0.042 9.2E-07 58.8 6.0 109 149-261 64-183 (475)
51 COG4820 EutJ Ethanolamine util 94.5 0.014 3E-07 55.3 0.8 81 197-295 115-195 (277)
52 PF06406 StbA: StbA protein; 91.8 0.29 6.3E-06 50.6 5.7 70 200-269 137-212 (318)
53 PF06277 EutA: Ethanolamine ut 91.1 0.71 1.5E-05 49.7 7.9 105 149-259 61-178 (473)
54 KOG0103 Molecular chaperones H 90.3 11 0.00025 42.2 16.3 91 178-269 141-246 (727)
55 KOG0101 Molecular chaperones H 89.0 1.5 3.3E-05 48.9 8.4 89 177-266 146-244 (620)
56 TIGR03123 one_C_unchar_1 proba 88.2 3.5 7.7E-05 42.5 10.0 93 149-247 34-153 (318)
57 TIGR00241 CoA_E_activ CoA-subs 86.5 11 0.00024 37.3 12.3 100 149-267 33-137 (248)
58 PF14450 FtsA: Cell division p 84.3 4.9 0.00011 35.1 7.7 58 225-300 2-70 (120)
59 PF01968 Hydantoinase_A: Hydan 83.5 1.4 3E-05 45.0 4.4 32 215-246 69-101 (290)
60 PF02541 Ppx-GppA: Ppx/GppA ph 82.9 2.7 5.8E-05 42.6 6.2 69 192-263 75-151 (285)
61 PF08841 DDR: Diol dehydratase 79.8 11 0.00024 38.0 9.0 91 188-296 95-191 (332)
62 TIGR02261 benz_CoA_red_D benzo 71.4 1.7 3.7E-05 43.6 0.8 50 432-488 213-262 (262)
63 KOG0104 Molecular chaperones G 70.8 16 0.00035 41.5 8.2 91 178-269 162-275 (902)
64 KOG0102 Molecular chaperones m 69.3 33 0.00071 37.8 9.8 90 179-268 164-261 (640)
65 TIGR02259 benz_CoA_red_A benzo 66.7 2.7 5.8E-05 44.5 1.2 53 429-488 380-432 (432)
66 TIGR03286 methan_mark_15 putat 62.3 2.3 5.1E-05 45.1 -0.2 49 429-489 354-402 (404)
67 COG1548 Predicted transcriptio 61.5 5.5 0.00012 39.6 2.1 93 145-244 33-152 (330)
68 TIGR03192 benz_CoA_bzdQ benzoy 61.3 2.6 5.7E-05 42.9 -0.1 50 429-489 238-287 (293)
69 PRK11031 guanosine pentaphosph 57.5 15 0.00033 40.4 5.1 69 192-263 95-171 (496)
70 PF00012 HSP70: Hsp70 protein; 54.1 3 6.5E-05 46.8 -1.2 66 410-490 311-376 (602)
71 TIGR03706 exo_poly_only exopol 49.4 17 0.00037 37.1 3.6 70 192-264 89-165 (300)
72 COG0248 GppA Exopolyphosphatas 48.3 13 0.00027 40.9 2.5 69 192-263 92-168 (492)
73 PF08735 DUF1786: Putative pyr 46.9 34 0.00073 34.2 5.0 45 200-245 139-190 (254)
74 PRK13317 pantothenate kinase; 43.6 10 0.00022 38.5 0.8 72 409-489 201-273 (277)
75 COG4819 EutA Ethanolamine util 42.2 72 0.0016 33.1 6.5 107 149-259 63-180 (473)
76 PRK10854 exopolyphosphatase; P 38.4 31 0.00067 38.2 3.7 67 192-261 100-174 (513)
77 COG4012 Uncharacterized protei 35.6 1E+02 0.0022 31.0 6.3 40 206-245 207-250 (342)
78 PF03702 UPF0075: Uncharacteri 33.3 23 0.00051 37.3 1.6 26 431-456 285-310 (364)
79 COG1924 Activator of 2-hydroxy 32.4 15 0.00032 38.6 -0.0 44 434-489 346-389 (396)
80 TIGR03286 methan_mark_15 putat 31.0 1.5E+02 0.0033 31.7 7.2 104 149-265 177-286 (404)
81 COG0145 HyuA N-methylhydantoin 30.9 66 0.0014 36.9 4.8 31 215-245 269-301 (674)
82 PF01869 BcrAD_BadFG: BadF/Bad 22.9 6.4 0.00014 39.4 -4.6 66 410-488 206-271 (271)
83 KOG2960 Protein involved in th 21.6 43 0.00093 32.6 1.0 82 425-514 70-155 (328)
84 TIGR03367 queuosine_QueD queuo 21.5 1.9E+02 0.0042 23.9 4.8 50 134-202 42-91 (92)
No 1
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=1.3e-71 Score=568.54 Aligned_cols=359 Identities=23% Similarity=0.413 Sum_probs=304.0
Q ss_pred HHHHHhhhhcCccCCccccCCCCCccccccccccccCcccccccccccccccCCCCCcccccccCCCCCCcccccCCCCC
Q 009546 17 AYDVIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRKDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRN 96 (532)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~n~~~~p~~i~~h~~ 96 (532)
.+|.++++.|.+|.+++.|...||..+||+...... .
T Consensus 11 ViDnGsg~~KaGfag~~~P~~v~ps~vg~~~~~~~~-------------------~------------------------ 47 (372)
T KOG0676|consen 11 VIDNGSGFVKAGFAGDDAPRAVFPSIVGRPRHQGVM-------------------A------------------------ 47 (372)
T ss_pred EEECCCceeecccCCCCCCceecceecccccccccc-------------------c------------------------
Confidence 368899999999999999999999999995511110 0
Q ss_pred CCccccccccccCcceEEccccccCCCCCCceEecceeCCeeeecCCCCcccCHHHHHHHHHHHhhhhcCCCCCCCCccc
Q 009546 97 TDIKELNSSERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYS 176 (532)
Q Consensus 97 ~~~~~~~~~~~~~~~~~vG~ea~~~~~~~~~~l~~Pi~~G~i~~~~~~~~q~dwd~le~iw~~i~~~~L~i~~~e~~~~~ 176 (532)
....++.+||++|.... .|+|||+||+|+ |||+|+.||+|+|++.|++.|+++
T Consensus 48 ---------~~~~~~~~vg~~a~~~~-----~l~~Pie~Giv~---------~wd~me~iw~~if~~~L~~~Pee~---- 100 (372)
T KOG0676|consen 48 ---------GMTQKDTYVGDEAESKR-----TLKYPIERGIVT---------DWDDMEKIWHHLFYSELLVAPEEH---- 100 (372)
T ss_pred ---------cccccccccchhhhccc-----cccCcccccccc---------chHHHHHHHHHHHHHhhccCcccC----
Confidence 01356788999998752 889999999999 999999999999999999999998
Q ss_pred eEEecCCCCChHHHHH-HHHHHHHhcCCCEEEEeehhhHhhhhcCCceEEEEeeCCCcEEEEEeeCCeeccCCcEEecch
Q 009546 177 AILVLPESFDNREIKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFG 255 (532)
Q Consensus 177 ~Vlv~e~~~~~~~~rk-l~eilFE~~~~psv~~~~~avlalya~G~~tglVVDiG~~~T~VvpV~dG~vl~~s~~~~~~G 255 (532)
|||+++++++++..|+ ++|+|||.|++|++++..++++ |++|++||||||+|++.|+++||+||+++++++.++++|
T Consensus 101 pvllte~pl~p~~nREk~tqi~FE~fnvpa~yva~qavl--ya~g~ttG~VvD~G~gvt~~vPI~eG~~lp~ai~~ldl~ 178 (372)
T KOG0676|consen 101 PVLLTEPPLNPKANREKLTQIMFETFNVPALYVAIQAVL--YASGRTTGLVVDSGDGVTHVVPIYEGYALPHAILRLDLA 178 (372)
T ss_pred ceEeecCCCCchHhHHHHHHHhhhhcCccHhHHHHHHHH--HHcCCeeEEEEEcCCCceeeeecccccccchhhheeccc
Confidence 7999999999999885 9999999999999999887777 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCcccccccccchHHHHHHHHHHceeccCCccchhhhhccccCCCCCCCceeeeeeccCCCC
Q 009546 256 GEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPM 335 (532)
Q Consensus 256 G~~lt~~L~~lL~~~~~~p~~~~~~l~~~~d~~~~~~iKe~~c~v~~~e~~~~~~~~~y~~~~p~~~~k~~~~~~~~~P~ 335 (532)
|+++|++|+.+|.+.+ +++.+..+.+++++|||++|||+.+ . ++++........+.
T Consensus 179 G~dlt~~l~~~L~~~g-------~s~~~~~~~eIv~diKeklCyvald-~---------~~e~~~~~~~~~l~------- 234 (372)
T KOG0676|consen 179 GRDLTDYLLKQLRKRG-------YSFTTSAEFEIVRDIKEKLCYVALD-F---------EEEEETANTSSSLE------- 234 (372)
T ss_pred chhhHHHHHHHHHhcc-------cccccccHHHHHHHhHhhhcccccc-c---------chhhhccccccccc-------
Confidence 9999999999888765 3566678899999999999999963 1 11110000000000
Q ss_pred CCCCCcccCCCCCCCCCCCCCCCccccccCCccccCC-CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCcccCCCHHHH
Q 009546 336 GLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEEKIGLAEA 413 (532)
Q Consensus 336 ~lf~p~~~~~e~~~~p~~~~~~d~ed~l~d~~~~~~~-eR~~~~E~LF-p~~~g~~~~~~~~~~~~~~~~~~~~~gL~e~ 413 (532)
.+|+ ++|+..+.++ +|+.++|.|| |+..| .+..||+++
T Consensus 235 ---------------------~~y~--lPDg~~i~i~~erf~~pE~lFqP~~~g-----------------~e~~gi~~~ 274 (372)
T KOG0676|consen 235 ---------------------SSYE--LPDGQKITIGNERFRCPEVLFQPSLLG-----------------MESPGIHEL 274 (372)
T ss_pred ---------------------cccc--CCCCCEEecCCcccccchhcCChhhcC-----------------CCCCchhHH
Confidence 0111 3444444443 7999999999 77665 578899999
Q ss_pred HHHHHhcCCChHHHHHhhhCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCccceEeceeeeecccCc
Q 009546 414 VTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFG 493 (532)
Q Consensus 414 I~~sI~~~~~~d~r~~L~~NIvL~GG~S~i~Gf~eRL~~EL~~~~p~~~~~~~V~v~~~~~~~~~~aW~GgSIlasL~~f 493 (532)
+.+||.+| |+|+|+.||.||+|+||+|++|||.+||++||..+.|... +++|+++ .+|.+++|+||||+|+|++|
T Consensus 275 ~~~sI~kc-d~dlrk~L~~nivLsGGtT~~pGl~~Rl~kEl~~l~P~~~---~ikv~~p-p~r~~s~WlGgSIlaslstf 349 (372)
T KOG0676|consen 275 TVNSIMKC-DIDLRKDLYENIVLSGGTTMFPGLADRLQKELQALAPSTI---KIKVIAP-PERKYSAWLGGSILASLSTF 349 (372)
T ss_pred HHHHHHhC-ChhHhHHHHhheEEeCCcccchhHHHHHHHHHhhcCCCCc---ceEEecC-cccccceecCceeEeecchH
Confidence 99999999 9999999999999999999999999999999999999776 4577753 57889999999999999999
Q ss_pred cceeEeHHHHHHcCcceeeeccC
Q 009546 494 RDAWIHREDWIRNGIHIGSGRKY 516 (532)
Q Consensus 494 ~~~wITr~eYeE~G~~i~~rk~~ 516 (532)
++|||||+||+|+|+++++||||
T Consensus 350 q~~witk~eY~e~g~~~~~rk~f 372 (372)
T KOG0676|consen 350 QQMWITKEEYEEHGPSIIHRKCF 372 (372)
T ss_pred hhccccHHHHhhhCCceeeeccC
Confidence 99999999999999999999997
No 2
>PTZ00452 actin; Provisional
Probab=100.00 E-value=7.4e-71 Score=578.07 Aligned_cols=364 Identities=21% Similarity=0.367 Sum_probs=305.8
Q ss_pred HHHHHhhhhcCccCCccccCCCCCccccccccccccCcccccccccccccccCCCCCcccccccCCCCCCcccccCCCCC
Q 009546 17 AYDVIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRKDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRN 96 (532)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~n~~~~p~~i~~h~~ 96 (532)
..|.+++.+|++|.+|+.|...+|..+||.. ..+ . ++ .
T Consensus 9 ViD~Gs~~~k~G~age~~P~~i~ps~vg~~~-----~~~--~------~~-----------------------------~ 46 (375)
T PTZ00452 9 VIDNGSGYCKIGIAGDDAPTSCFPAIVGRSK-----QND--G------IF-----------------------------S 46 (375)
T ss_pred EEECCCCeEEEeeCCCCCcCEEecceeEEEC-----Ccc--c------cc-----------------------------c
Confidence 4689999999999999999999999999854 000 0 00 0
Q ss_pred CCccccccccccCcceEEccccccCCCCCCceEecceeCCeeeecCCCCcccCHHHHHHHHHHHhhhhcCCCCCCCCccc
Q 009546 97 TDIKELNSSERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYS 176 (532)
Q Consensus 97 ~~~~~~~~~~~~~~~~~vG~ea~~~~~~~~~~l~~Pi~~G~i~~~~~~~~q~dwd~le~iw~~i~~~~L~i~~~e~~~~~ 176 (532)
+ ..+++++|++|... +..+.+++||++|+|. |||++|.||+|+|++.|+++|+++
T Consensus 47 -----~-----~~~~~~iG~~~~~~--~~~~~l~~Pi~~G~I~---------dwd~~e~iw~~~f~~~l~v~p~~~---- 101 (375)
T PTZ00452 47 -----T-----FNKEYYVGEEAQAK--RGVLAIKEPIQNGIIN---------SWDDIEIIWHHAFYNELCMSPEDQ---- 101 (375)
T ss_pred -----c-----cccceEEChhhhcc--ccCcEEcccCcCCEEc---------CHHHHHHHHHHHHHhhcCCCcccC----
Confidence 0 12357999998763 5789999999999998 999999999999999999999998
Q ss_pred eEEecCCCCChHHHHH-HHHHHHHhcCCCEEEEeehhhHhhhhcCCceEEEEeeCCCcEEEEEeeCCeeccCCcEEecch
Q 009546 177 AILVLPESFDNREIKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFG 255 (532)
Q Consensus 177 ~Vlv~e~~~~~~~~rk-l~eilFE~~~~psv~~~~~avlalya~G~~tglVVDiG~~~T~VvpV~dG~vl~~s~~~~~~G 255 (532)
|||++|++++++..|+ ++|+|||+|++|+++++++++|++||+|++||||||+|++.|+|+||+||++++++++++++|
T Consensus 102 pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~~tglVVDiG~~~t~v~PV~dG~~l~~~~~r~~~g 181 (375)
T PTZ00452 102 PVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGKTIGLVVDSGEGVTHCVPVFEGHQIPQAITKINLA 181 (375)
T ss_pred ceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCCCceeeeecCCCCcceEEEEECCEEeccceEEeecc
Confidence 7999999999888874 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCcccccccccchHHHHHHHHHHceeccCCccchhhhhccccCCCCCCCceeeeeeccCCCC
Q 009546 256 GEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPM 335 (532)
Q Consensus 256 G~~lt~~L~~lL~~~~~~p~~~~~~l~~~~d~~~~~~iKe~~c~v~~~e~~~~~~~~~y~~~~p~~~~k~~~~~~~~~P~ 335 (532)
|+++|++|.++|..++. ++....+.+++++|||++|||+.+..+. ...+.. .....
T Consensus 182 G~~lt~~L~~lL~~~~~-------~~~~~~~~~~~~~iKe~~c~v~~d~~~e---~~~~~~--~~~~~------------ 237 (375)
T PTZ00452 182 GRLCTDYLTQILQELGY-------SLTEPHQRIIVKNIKERLCYTALDPQDE---KRIYKE--SNSQD------------ 237 (375)
T ss_pred chHHHHHHHHHHHhcCC-------CCCCHHHHHHHHHHHHHhccccCcHHHH---HHHhhc--cCCcC------------
Confidence 99999999999987652 3444457789999999999998641110 000000 00000
Q ss_pred CCCCCcccCCCCCCCCCCCCCCCccccccCCccccCC-CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCcccCCCHHHH
Q 009546 336 GLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEEKIGLAEA 413 (532)
Q Consensus 336 ~lf~p~~~~~e~~~~p~~~~~~d~ed~l~d~~~~~~~-eR~~~~E~LF-p~~~g~~~~~~~~~~~~~~~~~~~~~gL~e~ 413 (532)
.+| .+||+..+.++ ||+.++|+|| |+..| .+..||+++
T Consensus 238 ---------------------~~y--~LPDg~~i~l~~er~~~~E~LF~P~~~g-----------------~~~~gi~~~ 277 (375)
T PTZ00452 238 ---------------------SPY--KLPDGNILTIKSQKFRCSEILFQPKLIG-----------------LEVAGIHHL 277 (375)
T ss_pred ---------------------ceE--ECCCCCEEEeehHHhcCcccccChhhcC-----------------CCCCChhHH
Confidence 001 14455555554 7999999999 76654 466799999
Q ss_pred HHHHHhcCCChHHHHHhhhCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCccceEeceeeeecccCc
Q 009546 414 VTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFG 493 (532)
Q Consensus 414 I~~sI~~~~~~d~r~~L~~NIvL~GG~S~i~Gf~eRL~~EL~~~~p~~~~~~~V~v~~~~~~~~~~aW~GgSIlasL~~f 493 (532)
|.+||.+| |+|+|+.|++||||+||+|++|||.+||++||..++|... +|+|.. +.+|++++|+||||||+|++|
T Consensus 278 i~~si~~c-~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~~---~v~v~~-~~~r~~~aW~GgSilasl~~f 352 (375)
T PTZ00452 278 AYSSIKKC-DLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQL---KIQVAA-PPDRRFSAWIGGSIQCTLSTQ 352 (375)
T ss_pred HHHHHHhC-CHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCCCCc---eeEEec-CCCcceeEEECchhhcCccch
Confidence 99999999 9999999999999999999999999999999999998754 567775 358999999999999999999
Q ss_pred cceeEeHHHHHHcCcceeeeccC
Q 009546 494 RDAWIHREDWIRNGIHIGSGRKY 516 (532)
Q Consensus 494 ~~~wITr~eYeE~G~~i~~rk~~ 516 (532)
+++||||+||+|+|.++++|||+
T Consensus 353 ~~~~vtk~eYeE~G~~i~~~k~~ 375 (375)
T PTZ00452 353 QPQWIKRQEYDEQGPSIVHRKCF 375 (375)
T ss_pred hhhEeEHHHHhccCcceeeeecC
Confidence 99999999999999999999996
No 3
>PTZ00466 actin-like protein; Provisional
Probab=100.00 E-value=2.8e-70 Score=574.30 Aligned_cols=362 Identities=20% Similarity=0.355 Sum_probs=304.8
Q ss_pred HHHHHhhhhcCccCCccccCCCCCccccccccccccCcccccccccccccccCCCCCcccccccCCCCCCcccccCCCCC
Q 009546 17 AYDVIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRKDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRN 96 (532)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~n~~~~p~~i~~h~~ 96 (532)
..|.+++.+|++|.++|.|...||..+||... + .++ .
T Consensus 16 ViD~GS~~~K~G~ag~~~P~~~~ps~vg~~k~------~--------~~~-----------------------------~ 52 (380)
T PTZ00466 16 IIDNGTGYIKAGFAGEDVPNLVFPSYVGRPKY------K--------RVM-----------------------------A 52 (380)
T ss_pred EEECCCCcEEEeeCCCCCCCEeccceeeeecC------c--------ccc-----------------------------c
Confidence 36999999999999999999999999999651 0 000 0
Q ss_pred CCccccccccccCcceEEccccccCCCCCCceEecceeCCeeeecCCCCcccCHHHHHHHHHHHhhhhcCCCCCCCCccc
Q 009546 97 TDIKELNSSERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYS 176 (532)
Q Consensus 97 ~~~~~~~~~~~~~~~~~vG~ea~~~~~~~~~~l~~Pi~~G~i~~~~~~~~q~dwd~le~iw~~i~~~~L~i~~~e~~~~~ 176 (532)
+ ...++++||++|... +..+.+++||++|+|. |||++|.||+|+| +.|+++|+++
T Consensus 53 ~---------~~~~~~~vG~~~~~~--~~~~~l~~Pi~~G~v~---------dwd~~e~iw~~~f-~~l~v~~~~~---- 107 (380)
T PTZ00466 53 G---------AVEGNIFVGNKAEEY--RGLLKVTYPINHGIIE---------NWNDMENIWIHVY-NSMKINSEEH---- 107 (380)
T ss_pred c---------CCCCCeEECchhhhh--CcCceeCccccCCeEC---------CHHHHHHHHHHHH-hhcccCCccC----
Confidence 0 012357999999764 4678899999999998 9999999999998 7899999888
Q ss_pred eEEecCCCCChHHHHH-HHHHHHHhcCCCEEEEeehhhHhhhhcCCceEEEEeeCCCcEEEEEeeCCeeccCCcEEecch
Q 009546 177 AILVLPESFDNREIKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFG 255 (532)
Q Consensus 177 ~Vlv~e~~~~~~~~rk-l~eilFE~~~~psv~~~~~avlalya~G~~tglVVDiG~~~T~VvpV~dG~vl~~s~~~~~~G 255 (532)
|||+++++++++..|+ ++|+|||+|++|+++++++++||+||+|++||||||+|++.|+|+||+||+++.+++.++++|
T Consensus 108 pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~~tglVVD~G~~~t~v~PV~~G~~~~~~~~~~~~G 187 (380)
T PTZ00466 108 PVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGKTNGTVLDCGDGVCHCVSIYEGYSITNTITRTDVA 187 (380)
T ss_pred eEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCCceEEEEeCCCCceEEEEEECCEEeecceeEecCc
Confidence 7999999999888875 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCcccccccccchHHHHHHHHHHceeccCCccchhhhhccccCCCCCCCceeeeeeccCCCC
Q 009546 256 GEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPM 335 (532)
Q Consensus 256 G~~lt~~L~~lL~~~~~~p~~~~~~l~~~~d~~~~~~iKe~~c~v~~~e~~~~~~~~~y~~~~p~~~~k~~~~~~~~~P~ 335 (532)
|+++|++|.++|+.++. .+.+..+.+++++|||++|||+.+..... .... .+....
T Consensus 188 G~~lt~~L~~lL~~~~~-------~~~~~~~~~~v~~iKe~~c~v~~d~~~e~---~~~~--~~~~~~------------ 243 (380)
T PTZ00466 188 GRDITTYLGYLLRKNGH-------LFNTSAEMEVVKNMKENCCYVSFNMNKEK---NSSE--KALTTL------------ 243 (380)
T ss_pred hhHHHHHHHHHHHhcCC-------CCCcHHHHHHHHHHHHhCeEecCChHHHH---hhcc--ccccce------------
Confidence 99999999999987652 34445678899999999999986411000 0000 000000
Q ss_pred CCCCCcccCCCCCCCCCCCCCCCccccccCCccccCC-CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCcccCCCHHHH
Q 009546 336 GLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEEKIGLAEA 413 (532)
Q Consensus 336 ~lf~p~~~~~e~~~~p~~~~~~d~ed~l~d~~~~~~~-eR~~~~E~LF-p~~~g~~~~~~~~~~~~~~~~~~~~~gL~e~ 413 (532)
+| .+||+..+.++ ||+.++|+|| |+..| .+..||+++
T Consensus 244 ----------------------~y--~LPdg~~i~l~~er~~~~E~LF~P~~~g-----------------~~~~gl~~~ 282 (380)
T PTZ00466 244 ----------------------PY--ILPDGSQILIGSERYRAPEVLFNPSILG-----------------LEYLGLSEL 282 (380)
T ss_pred ----------------------eE--ECCCCcEEEEchHHhcCcccccCccccC-----------------CCCCCHHHH
Confidence 00 13455555554 7999999999 76655 467799999
Q ss_pred HHHHHhcCCChHHHHHhhhCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCccceEeceeeeecccCc
Q 009546 414 VTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFG 493 (532)
Q Consensus 414 I~~sI~~~~~~d~r~~L~~NIvL~GG~S~i~Gf~eRL~~EL~~~~p~~~~~~~V~v~~~~~~~~~~aW~GgSIlasL~~f 493 (532)
|.+||.+| |+|+|+.|++||+|+||+|++|||.+||++||..++|... +|+|.. +.+|.+++|+||||+|++++|
T Consensus 283 i~~sI~~c-~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~---~v~v~~-~~~r~~~aW~GgSilasl~~f 357 (380)
T PTZ00466 283 IVTSITRA-DMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDI---TIRISA-PPERKFSTFIGGSILASLATF 357 (380)
T ss_pred HHHHHHhC-ChhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHhCCCCc---eEEEec-CCCCceeEEECchhhcCccch
Confidence 99999999 9999999999999999999999999999999999998754 567774 468999999999999999999
Q ss_pred cceeEeHHHHHHcCcceeeeccC
Q 009546 494 RDAWIHREDWIRNGIHIGSGRKY 516 (532)
Q Consensus 494 ~~~wITr~eYeE~G~~i~~rk~~ 516 (532)
+++||||+||+|+|+++++||||
T Consensus 358 ~~~~itk~eYeE~G~~iv~rk~~ 380 (380)
T PTZ00466 358 KKIWISKQEFDEYGSVILHRKTF 380 (380)
T ss_pred hhhEeEHHHHhhhCcHhheeecC
Confidence 99999999999999999999996
No 4
>PTZ00281 actin; Provisional
Probab=100.00 E-value=4.3e-69 Score=565.69 Aligned_cols=364 Identities=19% Similarity=0.356 Sum_probs=304.9
Q ss_pred HHHHHhhhhcCccCCccccCCCCCccccccccccccCcccccccccccccccCCCCCcccccccCCCCCCcccccCCCCC
Q 009546 17 AYDVIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRKDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRN 96 (532)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~n~~~~p~~i~~h~~ 96 (532)
..|.++..+|++|.+|+.|...||..+|+.+ ..+ ++ .
T Consensus 10 ViD~Gs~~~k~G~age~~P~~i~ps~vg~~~-----~~~---------~~-----------------------------~ 46 (376)
T PTZ00281 10 VIDNGSGMCKAGFAGDDAPRAVFPSIVGRPR-----HTG---------VM-----------------------------V 46 (376)
T ss_pred EEECCCCeEEEeeCCCCCCCeeccccceeec-----Ccc---------cc-----------------------------c
Confidence 3689999999999999999999999999854 000 00 0
Q ss_pred CCccccccccccCcceEEccccccCCCCCCceEecceeCCeeeecCCCCcccCHHHHHHHHHHHhhhhcCCCCCCCCccc
Q 009546 97 TDIKELNSSERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYS 176 (532)
Q Consensus 97 ~~~~~~~~~~~~~~~~~vG~ea~~~~~~~~~~l~~Pi~~G~i~~~~~~~~q~dwd~le~iw~~i~~~~L~i~~~e~~~~~ 176 (532)
. ...+++++|+++... +..+.+++||++|.|. |||+++.+|+|+|++.|+++|+++
T Consensus 47 ~---------~~~~~~~~g~~~~~~--~~~~~l~~Pi~~G~i~---------dwd~~e~l~~~~f~~~l~v~p~~~---- 102 (376)
T PTZ00281 47 G---------MGQKDSYVGDEAQSK--RGILTLKYPIEHGIVT---------NWDDMEKIWHHTFYNELRVAPEEH---- 102 (376)
T ss_pred C---------cccCCeEECchhhcc--ccCcEEeccCcCCEEc---------CHHHHHHHHHHHHHhhccCCCccC----
Confidence 0 012357999998753 5689999999999998 999999999999988999999998
Q ss_pred eEEecCCCCChHHHHH-HHHHHHHhcCCCEEEEeehhhHhhhhcCCceEEEEeeCCCcEEEEEeeCCeeccCCcEEecch
Q 009546 177 AILVLPESFDNREIKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFG 255 (532)
Q Consensus 177 ~Vlv~e~~~~~~~~rk-l~eilFE~~~~psv~~~~~avlalya~G~~tglVVDiG~~~T~VvpV~dG~vl~~s~~~~~~G 255 (532)
|||+++++++++..|+ ++|+|||.|++|+++++++++|++||+|++||||||+|++.|+|+||+||+++.++++++++|
T Consensus 103 pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~~tglVVDiG~~~t~v~PV~dG~~~~~~~~~~~~G 182 (376)
T PTZ00281 103 PVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLA 182 (376)
T ss_pred eEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCCceEEEEECCCceEEEEEEEecccchhheeeccCc
Confidence 7999999999888885 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCcccccccccchHHHHHHHHHHceeccCCccchhhhhccccCCCCCCCceeeeeeccCCCC
Q 009546 256 GEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPM 335 (532)
Q Consensus 256 G~~lt~~L~~lL~~~~~~p~~~~~~l~~~~d~~~~~~iKe~~c~v~~~e~~~~~~~~~y~~~~p~~~~k~~~~~~~~~P~ 335 (532)
|++||++|+++|..++. ++.+..+.+++++|||++|||+.+-... ..... .+... .
T Consensus 183 G~~lt~~L~~lL~~~~~-------~~~~~~~~~~~~~iKe~~c~v~~d~~~~---~~~~~--~~~~~-----~------- 238 (376)
T PTZ00281 183 GRDLTDYMMKILTERGY-------SFTTTAEREIVRDIKEKLAYVALDFEAE---MQTAA--SSSAL-----E------- 238 (376)
T ss_pred HHHHHHHHHHHHHhcCC-------CCCcHHHHHHHHHHHHhcEEecCCchHH---HHhhh--cCccc-----c-------
Confidence 99999999999987652 3444567889999999999998541000 00000 00000 0
Q ss_pred CCCCCcccCCCCCCCCCCCCCCCccccccCCccccCC-CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCcccCCCHHHH
Q 009546 336 GLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEEKIGLAEA 413 (532)
Q Consensus 336 ~lf~p~~~~~e~~~~p~~~~~~d~ed~l~d~~~~~~~-eR~~~~E~LF-p~~~g~~~~~~~~~~~~~~~~~~~~~gL~e~ 413 (532)
.+| .++|+..+.++ ||+.++|.|| |+..+ .+..||+++
T Consensus 239 ---------------------~~y--~LPdg~~i~i~~er~~~~E~LF~P~~~~-----------------~~~~gi~~~ 278 (376)
T PTZ00281 239 ---------------------KSY--ELPDGQVITIGNERFRCPEALFQPSFLG-----------------MESAGIHET 278 (376)
T ss_pred ---------------------eeE--ECCCCCEEEeeHHHeeCcccccChhhcC-----------------CCCCCHHHH
Confidence 000 13455555554 7999999999 66554 356799999
Q ss_pred HHHHHhcCCChHHHHHhhhCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCccceEeceeeeecccCc
Q 009546 414 VTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFG 493 (532)
Q Consensus 414 I~~sI~~~~~~d~r~~L~~NIvL~GG~S~i~Gf~eRL~~EL~~~~p~~~~~~~V~v~~~~~~~~~~aW~GgSIlasL~~f 493 (532)
|.+||.+| |+|+|+.|++||||+||+|+||||.+||++||..++|... +|+|... .+|.+++|+||||+|++++|
T Consensus 279 i~~sI~~~-~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~~~p~~~---~v~v~~~-~~r~~~aW~Ggsilasl~~f 353 (376)
T PTZ00281 279 TYNSIMKC-DVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTM---KIKIIAP-PERKYSVWIGGSILASLSTF 353 (376)
T ss_pred HHHHHHhC-ChhHHHHHHhhccccCccccCcCHHHHHHHHHHHhCCCCc---ceEEecC-CCCceeEEECcccccCcccH
Confidence 99999999 9999999999999999999999999999999999998764 5677753 58999999999999999999
Q ss_pred cceeEeHHHHHHcCcceeeeccC
Q 009546 494 RDAWIHREDWIRNGIHIGSGRKY 516 (532)
Q Consensus 494 ~~~wITr~eYeE~G~~i~~rk~~ 516 (532)
+++||||+||+|+|.++++|||+
T Consensus 354 ~~~~vtk~eY~E~G~~~~~~k~~ 376 (376)
T PTZ00281 354 QQMWISKEEYDESGPSIVHRKCF 376 (376)
T ss_pred hhceeeHHHHhhhCchheeeecC
Confidence 99999999999999999999996
No 5
>PTZ00004 actin-2; Provisional
Probab=100.00 E-value=9.2e-67 Score=548.61 Aligned_cols=364 Identities=21% Similarity=0.376 Sum_probs=301.9
Q ss_pred HHHHhhhhcCccCCccccCCCCCccccccccccccCcccccccccccccccCCCCCcccccccCCCCCCcccccCCCCCC
Q 009546 18 YDVIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRKDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRNT 97 (532)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~n~~~~p~~i~~h~~~ 97 (532)
.|.++..+|++|.+++.|...+|..+||... + . .+ .+
T Consensus 11 iD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~------~-~-------~~-----------------------------~~ 47 (378)
T PTZ00004 11 VDNGSGMVKAGFAGDDAPRCVFPSIVGRPKN------P-G-------IM-----------------------------VG 47 (378)
T ss_pred EECCCCeEEEeeCCCCCCCEEccceeEEecc------c-c-------cc-----------------------------cC
Confidence 6889999999999999999999999998541 0 0 00 00
Q ss_pred CccccccccccCcceEEccccccCCCCCCceEecceeCCeeeecCCCCcccCHHHHHHHHHHHhhhhcCCCCCCCCccce
Q 009546 98 DIKELNSSERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSA 177 (532)
Q Consensus 98 ~~~~~~~~~~~~~~~~vG~ea~~~~~~~~~~l~~Pi~~G~i~~~~~~~~q~dwd~le~iw~~i~~~~L~i~~~e~~~~~~ 177 (532)
...+++++|+++... +..+.+++||++|.|. |||+++.||+|+|.++|++++.++ |
T Consensus 48 ---------~~~~~~~~g~~~~~~--~~~~~l~~Pi~~G~i~---------d~d~~e~i~~~~~~~~l~v~~~~~----p 103 (378)
T PTZ00004 48 ---------MEEKDCYVGDEAQDK--RGILTLKYPIEHGIVT---------NWDDMEKIWHHTFYNELRVAPEEH----P 103 (378)
T ss_pred ---------cCCCceEECchhhcc--cccceEcccCcCCEEc---------CHHHHHHHHHHHHHhhcccCCccC----c
Confidence 012357999998754 4568999999999998 999999999999988999999888 7
Q ss_pred EEecCCCCChHHHHH-HHHHHHHhcCCCEEEEeehhhHhhhhcCCceEEEEeeCCCcEEEEEeeCCeeccCCcEEecchH
Q 009546 178 ILVLPESFDNREIKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGG 256 (532)
Q Consensus 178 Vlv~e~~~~~~~~rk-l~eilFE~~~~psv~~~~~avlalya~G~~tglVVDiG~~~T~VvpV~dG~vl~~s~~~~~~GG 256 (532)
||+++++++++..|+ ++|+|||.|+||+++++++++||+||+|++||||||+|++.|+|+||+||+++.++++++++||
T Consensus 104 vllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~GG 183 (378)
T PTZ00004 104 VLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYSLPHAIHRLDVAG 183 (378)
T ss_pred ceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCCceEEEEECCCCcEEEEEEECCEEeecceeeecccH
Confidence 999999998888774 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCcccccccccchHHHHHHHHHHceeccCCccchhhhhccccCCCCCCCceeeeeeccCCCCC
Q 009546 257 EDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMG 336 (532)
Q Consensus 257 ~~lt~~L~~lL~~~~~~p~~~~~~l~~~~d~~~~~~iKe~~c~v~~~e~~~~~~~~~y~~~~p~~~~k~~~~~~~~~P~~ 336 (532)
+++|++|+++|..++. .+....+.+++++|||++|||+.+ .+.. ..... ..+.. ..
T Consensus 184 ~~lt~~L~~lL~~~~~-------~~~~~~~~~~~~~iKe~~c~v~~d-~~~~--~~~~~-~~~~~-----~~-------- 239 (378)
T PTZ00004 184 RDLTEYMMKILHERGT-------TFTTTAEKEIVRDIKEKLCYIALD-FDEE--MGNSA-GSSDK-----YE-------- 239 (378)
T ss_pred HHHHHHHHHHHHhcCC-------CCCcHHHHHHHHHHhhcceeecCC-HHHH--Hhhhh-cCccc-----cc--------
Confidence 9999999999987652 233445678999999999999864 1100 00000 00000 00
Q ss_pred CCCCcccCCCCCCCCCCCCCCCccccccCCccccCC-CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCccc-CCCHHHH
Q 009546 337 LFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEE-KIGLAEA 413 (532)
Q Consensus 337 lf~p~~~~~e~~~~p~~~~~~d~ed~l~d~~~~~~~-eR~~~~E~LF-p~~~g~~~~~~~~~~~~~~~~~~~-~~gL~e~ 413 (532)
.+| .+||+..+.++ +|+.++|.|| |+..+ .+ ..||+++
T Consensus 240 --------------------~~y--~lPdg~~i~l~~er~~~~E~LF~P~~~~-----------------~~~~~gi~~~ 280 (378)
T PTZ00004 240 --------------------ESY--ELPDGTIITVGSERFRCPEALFQPSLIG-----------------KEEPPGIHEL 280 (378)
T ss_pred --------------------eEE--ECCCCCEEEEcHHHeeCcccccChhhcC-----------------ccccCChHHH
Confidence 000 13445555554 7999999999 66544 23 6799999
Q ss_pred HHHHHhcCCChHHHHHhhhCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCccceEeceeeeecccCc
Q 009546 414 VTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFG 493 (532)
Q Consensus 414 I~~sI~~~~~~d~r~~L~~NIvL~GG~S~i~Gf~eRL~~EL~~~~p~~~~~~~V~v~~~~~~~~~~aW~GgSIlasL~~f 493 (532)
|.+||.+| |+|+|+.|++||+|+||+|++|||.+||++||++++|... +++|.. +.+|.+++|+||||+|++++|
T Consensus 281 i~~sI~~~-~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p~~~---~~~v~~-~~~~~~~aW~Ggsilas~~~f 355 (378)
T PTZ00004 281 TFQSINKC-DIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTTLAPSTM---KIKVVA-PPERKYSVWIGGSILSSLPTF 355 (378)
T ss_pred HHHHHHhC-ChhHHHHHHhhEEeccchhcCcCHHHHHHHHHHHhCCCCc---cEEEec-CCCCceeEEECcccccCccch
Confidence 99999999 9999999999999999999999999999999999998764 456664 358999999999999999999
Q ss_pred cceeEeHHHHHHcCcceeeeccC
Q 009546 494 RDAWIHREDWIRNGIHIGSGRKY 516 (532)
Q Consensus 494 ~~~wITr~eYeE~G~~i~~rk~~ 516 (532)
+++||||+||+|+|+++++|||+
T Consensus 356 ~~~~vtk~eYeE~G~~~~~rk~~ 378 (378)
T PTZ00004 356 QQMWVTKEEYDESGPSIVHRKCF 378 (378)
T ss_pred hhhEeEHHHHhhhCcceEEeecC
Confidence 99999999999999999999996
No 6
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=100.00 E-value=8e-67 Score=518.93 Aligned_cols=379 Identities=20% Similarity=0.334 Sum_probs=299.8
Q ss_pred HHHHhhhhcCccCCccccCCCCCccccccccccccCcccccccccccccccCCCCCcccccccCCCCCCcccccCCCCCC
Q 009546 18 YDVIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRKDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRNT 97 (532)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~n~~~~p~~i~~h~~~ 97 (532)
.|.++--.+++|.+||.|-..||...|-+- ++.+
T Consensus 16 iDpGS~~traGyaged~Pk~ilPS~~G~~t---------------------k~~~------------------------- 49 (426)
T KOG0679|consen 16 IDPGSHTTRAGYAGEDSPKAILPSVYGKVT---------------------KTDG------------------------- 49 (426)
T ss_pred EeCCCceEeccccCCCCccccccceeeeee---------------------cccC-------------------------
Confidence 366777789999999999999999999761 0000
Q ss_pred CccccccccccCcceEEccccccCCCCCCceEecceeCCeeeecCCCCcccCHHHHHHHHHHHhhhhcCCCCCCCCccce
Q 009546 98 DIKELNSSERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSA 177 (532)
Q Consensus 98 ~~~~~~~~~~~~~~~~vG~ea~~~~~~~~~~l~~Pi~~G~i~~~~~~~~q~dwd~le~iw~~i~~~~L~i~~~e~~~~~~ 177 (532)
++...+.+|||++|...+ ++++.+..||++|++. |||.++.+|+|+|.++|+++|.+| |
T Consensus 50 -------d~~~~~~~y~~~~ai~~p-r~gmEv~~~i~nGlv~---------dWD~~~~~w~~~~~~~Lk~~p~eh----P 108 (426)
T KOG0679|consen 50 -------DAEDKKGYYVDENAIHVP-RPGMEVKTPIKNGLVE---------DWDLFEMQWRYAYKNQLKVNPEEH----P 108 (426)
T ss_pred -------ccccccceEeechhccCC-CCCCeeccchhcCCcc---------cHHHHHHHHHHHHhhhhhcCcccc----c
Confidence 011344589999999876 6899999999999998 999999999999988999999999 7
Q ss_pred EEecCCCCChHHHHH-HHHHHHHhcCCCEEEEeehhhHhhhhcCCceEEEEeeCCCcEEEEEeeCCeeccCCcEEecchH
Q 009546 178 ILVLPESFDNREIKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGG 256 (532)
Q Consensus 178 Vlv~e~~~~~~~~rk-l~eilFE~~~~psv~~~~~avlalya~G~~tglVVDiG~~~T~VvpV~dG~vl~~s~~~~~~GG 256 (532)
+|++||+|++++.|+ ++|++||+|+||+++++++++|++||+|++||||||||++.|+|+||+||+++.+++++.++||
T Consensus 109 ~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~GrstalVvDiGa~~~svsPV~DG~Vlqk~vvks~laG 188 (426)
T KOG0679|consen 109 VLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANGRSTALVVDIGATHTSVSPVHDGYVLQKGVVKSPLAG 188 (426)
T ss_pred eeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcCCCceEEEEecCCCceeeeeecceEeeeeeEecccch
Confidence 999999999999985 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCC--CCCccc---------c--c--c-----------cccchHHHHHHHHHHceeccCCccchhhh
Q 009546 257 EDISRCLLWTQRHHQT--WPQIRT---------D--I--L-----------TKAMDLLMLNRIKESYCEIKEGEIDAVAV 310 (532)
Q Consensus 257 ~~lt~~L~~lL~~~~~--~p~~~~---------~--~--l-----------~~~~d~~~~~~iKe~~c~v~~~e~~~~~~ 310 (532)
++|+..++++|+.++. .|.|.- + + + .......+++++|+.+|.|+..
T Consensus 189 dFl~~~~~q~l~~~~iei~P~y~ia~k~~v~~g~~an~~~~~~~~d~tes~~~y~~~~v~~e~ke~v~qv~dt------- 261 (426)
T KOG0679|consen 189 DFLNDQCRQLLEPKNIEIIPMYNIASKEPVREGYPANAVLRVSIPDLTESYHNYMEQRVYQEFKESVLQVSDT------- 261 (426)
T ss_pred HHHHHHHHHHHhhcCcccCcHHHhhhcccccccCcchhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhccCC-------
Confidence 9999999999987742 222110 0 0 0 0000112334444444433311
Q ss_pred hccccCCCCCCCceeeeeeccCCCCCCCCCcccCCCCCCCCCCCCCCCccccccCCccccCC-CCCCCCCCCC-CCCCCC
Q 009546 311 VHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVG 388 (532)
Q Consensus 311 ~~~y~~~~p~~~~k~~~~~~~~~P~~lf~p~~~~~e~~~~p~~~~~~d~ed~l~d~~~~~~~-eR~~~~E~LF-p~~~g~ 388 (532)
-|++....+ .|+ ....++++++..++ +||++||.|| |+..-+
T Consensus 262 --------------------------p~de~~~~~----i~~------~~~efP~g~~~~~G~er~ripe~lF~Ps~v~~ 305 (426)
T KOG0679|consen 262 --------------------------PFDEEVAAQ----IPT------KHFEFPDGYTLDFGAERFRIPEYLFKPSLVKS 305 (426)
T ss_pred --------------------------CCccccccc----CCC------ccccCCCCcccccCcceeecchhhcCcchhcc
Confidence 011111100 011 12346788877887 8999999999 776533
Q ss_pred CCCCCCCCccCCCCCcccCCCHHHHHHHHHhcCCChHHHHHhhhCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEE
Q 009546 389 LPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVE 468 (532)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~gL~e~I~~sI~~~~~~d~r~~L~~NIvL~GG~S~i~Gf~eRL~~EL~~~~p~~~~~~~V~ 468 (532)
++..+++ ........|+++++..||..| |+|+|..|+.||||+||+|+|+||.+||++||....|.. + ++
T Consensus 306 ~s~~~~~-----~~~~n~~lG~~~lv~sSi~~c-DvdiR~~L~~nVivtGGtSliqG~s~RL~~ELs~~~P~s-r---lk 375 (426)
T KOG0679|consen 306 SSKEAGA-----TSHINTMLGLPHLVYSSINMC-DVDIRSSLLGNVIVTGGTSLIQGFSERLNKELSKRAPSS-R---LK 375 (426)
T ss_pred ccccccC-----CCCCccccCchHHHHhhhccC-hHHHHHHhhccEEEecCcchhhhHHHHHHHHHHHhCCcc-e---EE
Confidence 2211111 011135679999999999999 999999999999999999999999999999999999986 4 45
Q ss_pred EcC--CCCCCccceEeceeeeecccCccceeEeHHHHHHcCc-ceeeeccC
Q 009546 469 VLQ--SRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGI-HIGSGRKY 516 (532)
Q Consensus 469 v~~--~~~~~~~~aW~GgSIlasL~~f~~~wITr~eYeE~G~-~i~~rk~~ 516 (532)
++. ...+|+|++|+||||||||++|++|||||+||||.|. +.+.|||.
T Consensus 376 i~as~~t~eR~~~~WlGGSILASLgtFqq~WiSKqEYEE~G~d~~ve~rc~ 426 (426)
T KOG0679|consen 376 IIASGHTVERRFQSWLGGSILASLGTFQQLWISKQEYEEVGKDQLVERRCP 426 (426)
T ss_pred EEecCceeeehhhhhhhhHHHhccccHHHHhhhHHHHHHhhhHHHHhhcCC
Confidence 554 3579999999999999999999999999999999999 88999983
No 7
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=100.00 E-value=2.2e-66 Score=529.37 Aligned_cols=483 Identities=43% Similarity=0.729 Sum_probs=381.3
Q ss_pred CCCccccchhhhhHHHHHHHHhhhhcCccCCccccCCCCCccccccccccccCcccccccccccccccCCCCCccccccc
Q 009546 1 MLNSQVTTSQHVERERAYDVIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRKDVAFSWTNVYEKEPMPSTALESSS 80 (532)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 80 (532)
|+|..+++.||+ ++++|...+.+.|+-|+++-.-+...-+|+||+|+|++.+.- .
T Consensus 74 ~~~~p~l~p~~~-e~~n~~~~~ef~~~lll~~s~lss~~~~kk~ri~v~~~~q~l------------------------k 128 (618)
T KOG0797|consen 74 MLNTPVLTPQHV-EERNYNSAAEFLKILLLDESSLSSSASRKKGRIDVYNQAQTL------------------------K 128 (618)
T ss_pred cccCcCCCcccc-ccccccchhhhhHHHHHhhhhhhhHHHhhcCcccccCchHHh------------------------h
Confidence 678889999998 789999999999999998877788999999999999995442 1
Q ss_pred CCCCCCcccccCC-CCCCCcccccccc------ccCcceEEccccccCCCCCCceEecceeCCeeeec-CCCCcccCHHH
Q 009546 81 SMNHGIIKESMGQ-HRNTDIKELNSSE------RKFREFICGEEALRVSPTEPYCIHRPIRRGHLNIS-QHYPMQQVLED 152 (532)
Q Consensus 81 ~~n~~~~p~~i~~-h~~~~~~~~~~~~------~~~~~~~vG~ea~~~~~~~~~~l~~Pi~~G~i~~~-~~~~~q~dwd~ 152 (532)
|||+--.+|.+|. .-++-..+|.+.+ ..-++..+|++|.++ ..|.|++||++|.+|++ ++||.|+..++
T Consensus 129 n~n~~S~aetvP~ps~~~a~~~wld~e~~~hv~v~c~kr~~~ee~n~i---~~y~l~~Pir~G~fNv~~~y~Slq~l~~d 205 (618)
T KOG0797|consen 129 NDNVASPAETVPDPSASEAVPDWLDSEDTSHVKVKCRKRIFGEEANKI---SPYCLYHPIRRGHFNVSPPYYSLQRLCED 205 (618)
T ss_pred cccccCccccCCCCCCCcCCCCccccccchHHHHHHHHHHhhhhhhcC---CcceeecccccceeccCCcchhHHHHHHH
Confidence 5666666777773 3366677888743 234566788888876 48999999999999997 55599999999
Q ss_pred HHHHHHHHhhhhcCCCCCCCCccceEEecCCCCChHHHHHHHHHHHHhcCCCEEEEeehhhHhhhhcCCceEEEEeeCCC
Q 009546 153 LYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQ 232 (532)
Q Consensus 153 le~iw~~i~~~~L~i~~~e~~~~~~Vlv~e~~~~~~~~rkl~eilFE~~~~psv~~~~~avlalya~G~~tglVVDiG~~ 232 (532)
+++||+|++.+.|+|++++...|+.|+|+++.|.++++++++.++|-+++|.++.++++++||+||+|.+++||||||++
T Consensus 206 lt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGlss~CVVdiGAQ 285 (618)
T KOG0797|consen 206 LTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGLSSACVVDIGAQ 285 (618)
T ss_pred HHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCccceeEEEccCc
Confidence 99999999999999999998899999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEeeCCeeccCCcEEecchHHHHHHHHHHHHHhcCCCCCcccccccccchHHHHHHHHHHceeccCCccchhhhhc
Q 009546 233 VTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVH 312 (532)
Q Consensus 233 ~T~VvpV~dG~vl~~s~~~~~~GG~~lt~~L~~lL~~~~~~p~~~~~~l~~~~d~~~~~~iKe~~c~v~~~e~~~~~~~~ 312 (532)
.|+|+||.||.+++++..+++|||+|||++|.++|++.+ || |++.++...+||.+++++||++|.+..+++.......
T Consensus 286 kTsIaCVEdGvs~~ntri~L~YGGdDitr~f~~ll~rs~-FP-y~d~~v~~~~d~lLl~~LKe~Fc~l~~a~~~vQ~~~F 363 (618)
T KOG0797|consen 286 KTSIACVEDGVSLPNTRIILPYGGDDITRCFLWLLRRSG-FP-YQDCDVLAPIDWLLLNQLKEKFCHLRAAELGVQLTVF 363 (618)
T ss_pred ceeEEEeecCccccCceEEeccCCchHHHHHHHHHHhcC-CC-cccccccccccHHHHHHHHHHhccccHhhhhhhhhhh
Confidence 999999999999999999999999999999999998854 55 5556777789999999999999999876654432222
Q ss_pred cccCCCCCC-Cceeeee---eccCCCCCCCCCcccCCCC--------CCCCCCCCCCCccccccCCccccCC----CCCC
Q 009546 313 SYEDGMPPG-SHKTRLI---ALNVPPMGLFYPKLLVPDV--------YPPPPRSWFNDYEDMLEDTWHTDFP----RRSD 376 (532)
Q Consensus 313 ~y~~~~p~~-~~k~~~~---~~~~~P~~lf~p~~~~~e~--------~~~p~~~~~~d~ed~l~d~~~~~~~----eR~~ 376 (532)
.+ +.|++ ..++.+. +.+++|++||+|.++..+. +++|.+.++.|++-++.+++...++ .+..
T Consensus 364 ~~--R~pn~~~~kytfk~~DE~mlAPlaLF~P~lf~~~~tk~~~~q~~~q~d~~d~fd~e~~~~~~~~~~~~~~g~~~l~ 441 (618)
T KOG0797|consen 364 SY--REPNPPTLKYTFKLGDEVMLAPLALFYPNLFVIEGTKSHKNQSFPQPDREDLFDYEYLLEDTWKQDFGGGGNDGLQ 441 (618)
T ss_pred hc--cCCCCcceeeeeeccchhhccchhhhhhhhhhccccccccccccCCCCcccccchhhhhhhccccccccccccccc
Confidence 22 24443 3345443 6789999999999987665 4455555544444444444433211 1111
Q ss_pred --------------CCCCCCCCCCCCCCCCCCCCc-------cCCC------CCc-c----cCCCHHHHHHHHHhcCCCh
Q 009546 377 --------------ISDNFYPGINVGLPMWESYPV-------LTTK------PKK-E----EKIGLAEAVTSSILSTGRI 424 (532)
Q Consensus 377 --------------~~E~LFp~~~g~~~~~~~~~~-------~~~~------~~~-~----~~~gL~e~I~~sI~~~~~~ 424 (532)
.+|..-.+..| ....+.+.. ..++ ... . -..+|.++|+.||..|...
T Consensus 442 ls~~i~~~~~~~~~l~~~~d~~Elg-~t~~d~f~p~~~s~~gslaa~~i~n~~~~~~~f~gl~l~ldqsii~sid~~~sd 520 (618)
T KOG0797|consen 442 LSDSIGFSNRIRDQLPEKPDKEELG-VTLKDNFAPLEKSIVGSLAAASIMNKKGLYESFYGLLLALDQSIISSIDSALSD 520 (618)
T ss_pred ccccccccccccccccccccchhhc-cccccccCCchhhhhhhhhhhhhhcccceeccccchhhccchhHHHhhhhhccc
Confidence 11111000000 000001100 0000 000 0 1225677899999988778
Q ss_pred HHHHHhhhCeEEEcCCCCcCChHHHHHHHHhhhCCC-CCCcceEEEcCCC--CCCccceEeceeeeecccCccceeEeHH
Q 009546 425 DLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPS-NEAIDMVEVLQSR--TNPTYVSWKGGAVLGILDFGRDAWIHRE 501 (532)
Q Consensus 425 d~r~~L~~NIvL~GG~S~i~Gf~eRL~~EL~~~~p~-~~~~~~V~v~~~~--~~~~~~aW~GgSIlasL~~f~~~wITr~ 501 (532)
|.+++||++|+++||+.++|||.+-|++++...+|+ ...+..|.|++.+ ++|++.+|+||+|||.|...+++||++.
T Consensus 521 d~~rKl~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~VaWKGaaIla~l~~~~ELwI~~~ 600 (618)
T KOG0797|consen 521 DTKRKLFSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQFVAWKGAAILAILDFVRELWIENS 600 (618)
T ss_pred hhhHhhhhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchheEecchhhhhHHHHHHHHheech
Confidence 999999999999999999999999999999998887 4456789999876 8999999999999999999999999999
Q ss_pred HHHHcCcceeeeccC
Q 009546 502 DWIRNGIHIGSGRKY 516 (532)
Q Consensus 502 eYeE~G~~i~~rk~~ 516 (532)
||..+|.+++..||+
T Consensus 601 dW~~~G~RvL~~k~~ 615 (618)
T KOG0797|consen 601 DWQVHGVRVLQYKKY 615 (618)
T ss_pred hHhhhhhhhhhhccc
Confidence 999999999999998
No 8
>PTZ00280 Actin-related protein 3; Provisional
Probab=100.00 E-value=1.7e-64 Score=537.66 Aligned_cols=373 Identities=21% Similarity=0.308 Sum_probs=297.4
Q ss_pred HHHHHhhhhcCccCCccccCCCCCccccccccccccCcccccccccccccccCCCCCcccccccCCCCCCcccccCCCCC
Q 009546 17 AYDVIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRKDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRN 96 (532)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~n~~~~p~~i~~h~~ 96 (532)
.+|.+++.+|++|.+++.|...+|..+||..- ++ . ..+ .
T Consensus 8 ViD~GS~~~k~G~ag~~~P~~~~ps~v~~~~~------~~--------~-----~~~---~------------------- 46 (414)
T PTZ00280 8 VIDNGTGYTKMGYAGNTEPTYIIPTLIADNSK------QS--------R-----RRS---K------------------- 46 (414)
T ss_pred EEECCCCceEeeeCCCCCCCEEecceeEEecc------cc--------c-----ccc---c-------------------
Confidence 46899999999999999999999999998530 00 0 000 0
Q ss_pred CCccccccccccCcceEEccccccCCCCCCceEecceeCCeeeecCCCCcccCHHHHHHHHHHHhhhhcCCCCCCCCccc
Q 009546 97 TDIKELNSSERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYS 176 (532)
Q Consensus 97 ~~~~~~~~~~~~~~~~~vG~ea~~~~~~~~~~l~~Pi~~G~i~~~~~~~~q~dwd~le~iw~~i~~~~L~i~~~e~~~~~ 176 (532)
+. ...+++++|++|+.. ...+.+++||++|+|. |||+++.+|+|+|++.|+++|.++
T Consensus 47 ---~~-----~~~~~~~vG~ea~~~--~~~~~l~~Pi~~G~I~---------dwd~~e~l~~~~~~~~L~~~p~~~---- 103 (414)
T PTZ00280 47 ---KG-----FEDLDFYIGDEALAA--SKSYTLTYPMKHGIVE---------DWDLMEKFWEQCIFKYLRCEPEEH---- 103 (414)
T ss_pred ---cc-----cccCCEEEcchhhhC--cCCcEEecCccCCEeC---------CHHHHHHHHHHHHHHhhccCCCCC----
Confidence 00 012357999999876 3679999999999998 999999999999989999999998
Q ss_pred eEEecCCCCChHHHHH-HHHHHHHhcCCCEEEEeehhhHhhhhc----------CCceEEEEeeCCCcEEEEEeeCCeec
Q 009546 177 AILVLPESFDNREIKE-MLSIVLRDLRFASAVVHQEGLAAVFGN----------GLSTACVVNMGAQVTSVICVEDGVAL 245 (532)
Q Consensus 177 ~Vlv~e~~~~~~~~rk-l~eilFE~~~~psv~~~~~avlalya~----------G~~tglVVDiG~~~T~VvpV~dG~vl 245 (532)
++|+++++++++..|+ ++|+|||.|++|+++++.+++||+||+ |++||||||+|++.|+|+||+||+++
T Consensus 104 ~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~tglVVDiG~~~T~i~PV~~G~~l 183 (414)
T PTZ00280 104 YFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPVVDGYVI 183 (414)
T ss_pred ceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCceeEEEEECCCCceEEEEEECCEEc
Confidence 6999999998888774 999999999999999999999999999 99999999999999999999999999
Q ss_pred cCCcEEecchHHHHHHHHHHHHHhcCCCCCcccccccccchHHHHHHHHHHceeccCCccchhhhhccccCCCCCCC-ce
Q 009546 246 PNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGS-HK 324 (532)
Q Consensus 246 ~~s~~~~~~GG~~lt~~L~~lL~~~~~~p~~~~~~l~~~~d~~~~~~iKe~~c~v~~~e~~~~~~~~~y~~~~p~~~-~k 324 (532)
.++++++++||++||++|.++|+.++. .+....+.+++++|||++|||+.+-. . ..+.+.. .+... ..
T Consensus 184 ~~~~~~~~~GG~~lt~~L~~lL~~~~~-------~~~~~~~~~~~~~iKe~~c~v~~d~~-~--e~~~~~~-~~~~~~~~ 252 (414)
T PTZ00280 184 GSSIKHIPLAGRDITNFIQQMLRERGE-------PIPAEDILLLAQRIKEKYCYVAPDIA-K--EFEKYDS-DPKNHFKK 252 (414)
T ss_pred ccceEEecCcHHHHHHHHHHHHHHcCC-------CCCcHHHHHHHHHHHHhcCcccCcHH-H--HHHHhhc-Ccccccce
Confidence 999999999999999999999987652 23333467899999999999986411 1 1111110 01000 00
Q ss_pred eeeeeccCCCCCCCCCcccCCCCCCCCCCCCCCCccccccCCccccCC-CCCCCCCCCC-CCCCCCCCCCCCCCccCCCC
Q 009546 325 TRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKP 402 (532)
Q Consensus 325 ~~~~~~~~~P~~lf~p~~~~~e~~~~p~~~~~~d~ed~l~d~~~~~~~-eR~~~~E~LF-p~~~g~~~~~~~~~~~~~~~ 402 (532)
+. .|... ......+.++ +|+.++|.|| |+..+.
T Consensus 253 ~~------~~d~~-------------------------~g~~~~i~l~~erf~~~E~LF~P~~~~~-------------- 287 (414)
T PTZ00280 253 YT------AVNSV-------------------------TKKPYTVDVGYERFLGPEMFFHPEIFSS-------------- 287 (414)
T ss_pred EE------CCCCC-------------------------CCCccEEEechHHhcCcccccChhhcCC--------------
Confidence 10 01000 0001123343 7999999999 665431
Q ss_pred CcccCCCHHHHHHHHHhcCCChHHHHHhhhCeEEEcCCCCcCChHHHHHHHHhhhCCCC--------------CCcceEE
Q 009546 403 KKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSN--------------EAIDMVE 468 (532)
Q Consensus 403 ~~~~~~gL~e~I~~sI~~~~~~d~r~~L~~NIvL~GG~S~i~Gf~eRL~~EL~~~~p~~--------------~~~~~V~ 468 (532)
....||+++|.++|.+| |+|+|++|++||+|+||+|+||||.+||++||..+++.. ..+ +|+
T Consensus 288 --~~~~gl~e~i~~sI~~~-~~d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El~~~~~~~~~~~~~~~~~~~~~~~~-~v~ 363 (414)
T PTZ00280 288 --EWTTPLPEVVDDAIQSC-PIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVRKRVDRRLKKAEELSGGKLKPIPI-DVN 363 (414)
T ss_pred --ccCCCHHHHHHHHHHhC-ChhhHHHHhhcEEEeCCcccCcCHHHHHHHHHHHhccccccccccccccccCCCCc-eEE
Confidence 23459999999999999 999999999999999999999999999999999987431 122 577
Q ss_pred EcCCCCCCccceEeceeeeecccCccceeEeHHHHHHcCcceeeec
Q 009546 469 VLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGR 514 (532)
Q Consensus 469 v~~~~~~~~~~aW~GgSIlasL~~f~~~wITr~eYeE~G~~i~~rk 514 (532)
|... .++.+++|+||||||++++|+++||||+||+|+|.++++||
T Consensus 364 v~~~-~~~~~~~W~GgSilas~~~f~~~~itk~eY~E~G~~i~~~~ 408 (414)
T PTZ00280 364 VVSH-PRQRYAVWYGGSMLASSPEFEKVCHTKAEYDEYGPSICRYN 408 (414)
T ss_pred EecC-CccceeEEEChhhcccCcchhhheEEHHHHhccChHheeec
Confidence 7754 47889999999999999999999999999999999999987
No 9
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=100.00 E-value=2.1e-65 Score=484.69 Aligned_cols=365 Identities=22% Similarity=0.406 Sum_probs=303.6
Q ss_pred HHHHHhhhhcCccCCccccCCCCCccccccccccccCcccccccccccccccCCCCCcccccccCCCCCCcccccCCCCC
Q 009546 17 AYDVIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRKDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRN 96 (532)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~n~~~~p~~i~~h~~ 96 (532)
.||-+.+..||+|+++-.|.-.||.-+||.= -|-..+ +.
T Consensus 8 V~DnGTGfVKcGyAg~NFP~~~FPs~VGRPi------lR~~e~-------------------------------~g---- 46 (389)
T KOG0677|consen 8 VCDNGTGFVKCGYAGENFPTHIFPSIVGRPI------LRAEEK-------------------------------VG---- 46 (389)
T ss_pred EEeCCCceEEeccccCCCcccccchhcCchh------hhhhhh-------------------------------cc----
Confidence 3788999999999999999999999999954 110000 00
Q ss_pred CCccccccccccCcceEEccccccCCCCCCceEecceeCCeeeecCCCCcccCHHHHHHHHHHHhhhhcCCCCCCCCccc
Q 009546 97 TDIKELNSSERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYS 176 (532)
Q Consensus 97 ~~~~~~~~~~~~~~~~~vG~ea~~~~~~~~~~l~~Pi~~G~i~~~~~~~~q~dwd~le~iw~~i~~~~L~i~~~e~~~~~ 176 (532)
.-.-+++.|||+|..+ ++-+.+.|||++|++. |||+|+.+|+|.|.++|+|+|.++
T Consensus 47 ---------~~~iKD~mvGdeasel--Rs~L~i~YPmeNGivr---------nwddM~h~WDytF~ekl~idp~~~---- 102 (389)
T KOG0677|consen 47 ---------NIEIKDLMVGDEASEL--RSLLDINYPMENGIVR---------NWDDMEHVWDYTFGEKLKIDPTNC---- 102 (389)
T ss_pred ---------CeehhhheccchHHHH--HHHHhcCCcccccccc---------ChHHHHHHHHhhhhhhccCCCccC----
Confidence 0135779999999887 5789999999999998 999999999999999999999998
Q ss_pred eEEecCCCCChHHHH-HHHHHHHHhcCCCEEEEeehhhHhhhhcCCceEEEEeeCCCcEEEEEeeCCeeccCCcEEecch
Q 009546 177 AILVLPESFDNREIK-EMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFG 255 (532)
Q Consensus 177 ~Vlv~e~~~~~~~~r-kl~eilFE~~~~psv~~~~~avlalya~G~~tglVVDiG~~~T~VvpV~dG~vl~~s~~~~~~G 255 (532)
-+|+++||++|...| +|+|+|||+++|.++|++.++|+++||.|..||+|||+|.+.|+|+||+||+++++-.+|++++
T Consensus 103 KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~tGvVvDSGDGVTHi~PVye~~~l~HLtrRldvA 182 (389)
T KOG0677|consen 103 KILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHIVPVYEGFVLPHLTRRLDVA 182 (389)
T ss_pred eEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhcccceEEEecCCCeeEEeeeecceehhhhhhhcccc
Confidence 489999999998887 5999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCcccccccccchHHHHHHHHHHceeccCC-ccchhhhhccccCCCCCCCceeeeeeccCCC
Q 009546 256 GEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEG-EIDAVAVVHSYEDGMPPGSHKTRLIALNVPP 334 (532)
Q Consensus 256 G~~lt~~L~~lL~~~~~~p~~~~~~l~~~~d~~~~~~iKe~~c~v~~~-e~~~~~~~~~y~~~~p~~~~k~~~~~~~~~P 334 (532)
|+++|+||.+||..++ +.|+...|++.+++|||++||++-+ +++.. +. ...+.+.+.+
T Consensus 183 GRdiTryLi~LLl~rG-------YafN~tADFETVR~iKEKLCYisYd~e~e~k---------La--lETTvLv~~Y--- 241 (389)
T KOG0677|consen 183 GRDITRYLIKLLLRRG-------YAFNHTADFETVREIKEKLCYISYDLELEQK---------LA--LETTVLVESY--- 241 (389)
T ss_pred chhHHHHHHHHHHhhc-------cccccccchHHHHHHHhhheeEeechhhhhH---------hh--hhheeeeeee---
Confidence 9999999999998887 4788889999999999999999853 11100 00 0000010101
Q ss_pred CCCCCCcccCCCCCCCCCCCCCCCccccccCCccccCC-CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCcccCCCHHH
Q 009546 335 MGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEEKIGLAE 412 (532)
Q Consensus 335 ~~lf~p~~~~~e~~~~p~~~~~~d~ed~l~d~~~~~~~-eR~~~~E~LF-p~~~g~~~~~~~~~~~~~~~~~~~~~gL~e 412 (532)
.+|||..+..+ |||.+||.|| |.++. -+..|+++
T Consensus 242 ---------------------------tLPDGRvIkvG~ERFeAPE~LFqP~Li~-----------------VE~~G~ae 277 (389)
T KOG0677|consen 242 ---------------------------TLPDGRVIKVGGERFEAPEALFQPHLIN-----------------VEGPGVAE 277 (389)
T ss_pred ---------------------------ecCCCcEEEecceeccCchhhcCcceec-----------------cCCCcHHH
Confidence 13455555554 8999999999 87764 47889999
Q ss_pred HHHHHHhcCCChHHHHHhhhCeEEEcCCCCcCChHHHHHHHHhhhC-----CCC-CCcc--eEEEcCCCCCCccceEece
Q 009546 413 AVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAI-----PSN-EAID--MVEVLQSRTNPTYVSWKGG 484 (532)
Q Consensus 413 ~I~~sI~~~~~~d~r~~L~~NIvL~GG~S~i~Gf~eRL~~EL~~~~-----p~~-~~~~--~V~v~~~~~~~~~~aW~Gg 484 (532)
+++++|+.. ++|.|..||++|+|+||+++.|||..||++||+++. ... .++. +|++-. |..|.+.+++||
T Consensus 278 llF~~iQaa-DiD~R~~lYkhIVLSGGstMYPGLPSRLEkElkqlyl~rVL~~d~~~l~KfkiRIEd-PPrRKhMVflGG 355 (389)
T KOG0677|consen 278 LLFNTIQAA-DIDIRSELYKHIVLSGGSTMYPGLPSRLEKELKQLYLDRVLKGDTDKLKKFKIRIED-PPRRKHMVFLGG 355 (389)
T ss_pred HHHHHHHHh-ccchHHHHHhHeeecCCcccCCCCcHHHHHHHHHHHHHHHHcCChhhhhheEEeccC-CCccceeEEEch
Confidence 999999998 999999999999999999999999999999998752 211 1122 455553 567899999999
Q ss_pred eeeecc-cCccceeEeHHHHHHcCcceeee
Q 009546 485 AVLGIL-DFGRDAWIHREDWIRNGIHIGSG 513 (532)
Q Consensus 485 SIlasL-~~f~~~wITr~eYeE~G~~i~~r 513 (532)
++||.+ ..-.++|+||+||+|.|.+++.+
T Consensus 356 AVLA~imkD~d~fW~skqeyqE~G~~~l~k 385 (389)
T KOG0677|consen 356 AVLAGIMKDKDEFWMSKQEYQEEGINVLNK 385 (389)
T ss_pred HHHHHHhcCCccceecHHHHHhhhHHHHHh
Confidence 999997 55679999999999999988764
No 10
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=100.00 E-value=2.3e-63 Score=525.81 Aligned_cols=366 Identities=27% Similarity=0.448 Sum_probs=287.5
Q ss_pred HHHHhhhhcCccCCccccCCCCCccccccccccccCcccccccccccccccCCCCCcccccccCCCCCCcccccCCCCCC
Q 009546 18 YDVIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRKDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRNT 97 (532)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~n~~~~p~~i~~h~~~ 97 (532)
.|.++..+|++|.+|+.|...+|..+||...-...
T Consensus 9 iD~Gs~~~k~G~age~~P~~v~ps~~~~~~~~~~~--------------------------------------------- 43 (393)
T PF00022_consen 9 IDNGSSTIKAGFAGEDLPRVVIPSVVGRPRDKNSS--------------------------------------------- 43 (393)
T ss_dssp EEECSSEEEEEETTSSS-SEEEESEEEEESSSSSS---------------------------------------------
T ss_pred EECCCceEEEEECCCCCCCCcCCCccccccccccc---------------------------------------------
Confidence 47889999999999999999999999987611100
Q ss_pred CccccccccccCcceEEccccccCCCCCCceEecceeCCeeeecCCCCcccCHHHHHHHHHHHhhhhcCCCCCCCCccce
Q 009546 98 DIKELNSSERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSA 177 (532)
Q Consensus 98 ~~~~~~~~~~~~~~~~vG~ea~~~~~~~~~~l~~Pi~~G~i~~~~~~~~q~dwd~le~iw~~i~~~~L~i~~~e~~~~~~ 177 (532)
.++++|++++. ....+.+++|+++|.+. ||++++.+|+|+|.+.|++++.++ +
T Consensus 44 ------------~~~~~g~~~~~--~~~~~~~~~p~~~g~i~---------~~~~~e~i~~~~~~~~l~~~~~~~----~ 96 (393)
T PF00022_consen 44 ------------NDYYVGDEALS--PRSNLELRSPIENGVIV---------DWDALEEIWDYIFSNLLKVDPSDH----P 96 (393)
T ss_dssp ------------SSCEETHHHHH--TGTGEEEEESEETTEES---------SHHHHHHHHHHHHHTTT-SSGGGS----E
T ss_pred ------------eeEEeeccccc--chhheeeeeeccccccc---------cccccccccccccccccccccccc----e
Confidence 06799998665 25789999999999998 999999999999988899998888 7
Q ss_pred EEecCCCCChHHHHH-HHHHHHHhcCCCEEEEeehhhHhhhhcCCceEEEEeeCCCcEEEEEeeCCeeccCCcEEecchH
Q 009546 178 ILVLPESFDNREIKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGG 256 (532)
Q Consensus 178 Vlv~e~~~~~~~~rk-l~eilFE~~~~psv~~~~~avlalya~G~~tglVVDiG~~~T~VvpV~dG~vl~~s~~~~~~GG 256 (532)
||++++++.++..|+ ++|+|||+|+||+++++++++||+|++|++||||||+|++.|+|+||+||+++.++++++++||
T Consensus 97 vll~~~~~~~~~~r~~l~e~lfE~~~~~~v~~~~~~~~a~~~~g~~tglVVD~G~~~t~v~pV~dG~~~~~~~~~~~~GG 176 (393)
T PF00022_consen 97 VLLTEPPFNPRSQREKLAEILFEKFGVPSVYFIPSPLLALYASGRTTGLVVDIGYSSTSVVPVVDGYVLPHSIKRSPIGG 176 (393)
T ss_dssp EEEEESTT--HHHHHHHHHHHHHTS--SEEEEEEHHHHHHHHTTBSSEEEEEESSS-EEEEEEETTEE-GGGBEEES-SH
T ss_pred eeeeccccCCchhhhhhhhhhhcccccceeeeeecccccccccccccccccccceeeeeeeeeeeccccccccccccccH
Confidence 999999988877775 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCC--CCCcc--------cccccccchHHHHHHHHHHceeccCCccc--hh----hhhccccCCCCC
Q 009546 257 EDISRCLLWTQRHHQT--WPQIR--------TDILTKAMDLLMLNRIKESYCEIKEGEID--AV----AVVHSYEDGMPP 320 (532)
Q Consensus 257 ~~lt~~L~~lL~~~~~--~p~~~--------~~~l~~~~d~~~~~~iKe~~c~v~~~e~~--~~----~~~~~y~~~~p~ 320 (532)
++++++|+++|+.++. .|.+. ...+....+..+++++|+++|+|+.+... .. .....|. +|
T Consensus 177 ~~lt~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~--lP- 253 (393)
T PF00022_consen 177 DDLTEYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEEQASENPEKSYE--LP- 253 (393)
T ss_dssp HHHHHHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHHHHCSTTTEEEE---T-
T ss_pred HHHHHHHHHHHHhhccccccccccccccccccccccchhhhccchhccchhhhcccccccccccccccccceecc--cc-
Confidence 9999999999988531 11111 11233345678999999999999975321 00 0011111 22
Q ss_pred CCceeeeeeccCCCCCCCCCcccCCCCCCCCCCCCCCCccccccCCccccCC-CCCCCCCCCC-CCCCCCCCCCCCCCcc
Q 009546 321 GSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVL 398 (532)
Q Consensus 321 ~~~k~~~~~~~~~P~~lf~p~~~~~e~~~~p~~~~~~d~ed~l~d~~~~~~~-eR~~~~E~LF-p~~~g~~~~~~~~~~~ 398 (532)
|+..+.++ +|+.++|.|| |...+...
T Consensus 254 --------------------------------------------dg~~i~~~~er~~~~E~LF~p~~~~~~~-------- 281 (393)
T PF00022_consen 254 --------------------------------------------DGQTIILGKERFRIPEILFNPSLIGIDS-------- 281 (393)
T ss_dssp --------------------------------------------TSSEEEESTHHHHHHHTTTSGGGGTSSS--------
T ss_pred --------------------------------------------cccccccccccccccccccccccccccc--------
Confidence 22223332 5888899999 65543100
Q ss_pred CCCCCcccCCCHHHHHHHHHhcCCChHHHHHhhhCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCcc
Q 009546 399 TTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTY 478 (532)
Q Consensus 399 ~~~~~~~~~~gL~e~I~~sI~~~~~~d~r~~L~~NIvL~GG~S~i~Gf~eRL~~EL~~~~p~~~~~~~V~v~~~~~~~~~ 478 (532)
.....+..||+++|.+||.+| |+|+|+.|++||+|+||+|++|||.+||++||..+.|... +++|...+.+|.+
T Consensus 282 --~~~~~~~~gL~~~I~~si~~~-~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~eL~~~~~~~~---~~~v~~~~~~~~~ 355 (393)
T PF00022_consen 282 --ASEPSEFMGLPELILDSISKC-PIDLRKELLSNIVLTGGSSLIPGFKERLQQELRSLLPSST---KVKVIAPPSDRQF 355 (393)
T ss_dssp --TS---SSSCHHHHHHHHHHTS-TTTTHHHHHTTEEEESGGGGSTTHHHHHHHHHHHHSGTTS---TEEEE--T-TTTS
T ss_pred --cccccccchhhhhhhhhhhcc-ccccccccccceEEecccccccchHHHHHHHhhhhhhccc---cceeccCchhhhh
Confidence 000023459999999999999 9999999999999999999999999999999999987765 4566653338999
Q ss_pred ceEeceeeeecccCccceeEeHHHHHHcCcceeeeccC
Q 009546 479 VSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKY 516 (532)
Q Consensus 479 ~aW~GgSIlasL~~f~~~wITr~eYeE~G~~i~~rk~~ 516 (532)
++|+||||+|+|++|+++||||+||+|+|+++++|||+
T Consensus 356 ~aW~Ggsilasl~~f~~~~itr~eYeE~G~~~i~rkc~ 393 (393)
T PF00022_consen 356 AAWIGGSILASLSSFQSFWITREEYEEYGPSIIHRKCF 393 (393)
T ss_dssp HHHHHHHHHHTSGGGGGTSEEHHHHHHHGGGGHHHHT-
T ss_pred cccccceeeeccccccceeeeHHHHhCcCcceeeecCC
Confidence 99999999999999999999999999999999999996
No 11
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=100.00 E-value=4.2e-60 Score=497.82 Aligned_cols=364 Identities=22% Similarity=0.390 Sum_probs=295.9
Q ss_pred HHHHhhhhcCccCCccccCCCCCccccccccccccCcccccccccccccccCCCCCcccccccCCCCCCcccccCCCCCC
Q 009546 18 YDVIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRKDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRNT 97 (532)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~n~~~~p~~i~~h~~~ 97 (532)
.|.+++-+|++|.+++.|...+|..+|+.. +.++...
T Consensus 6 iD~Gs~~~k~G~~~~~~P~~~~ps~v~~~~-----~~~~~~~-------------------------------------- 42 (373)
T smart00268 6 IDNGSGTIKAGFAGEDEPQVVFPSIVGRPK-----DGKGMVG-------------------------------------- 42 (373)
T ss_pred EECCCCcEEEeeCCCCCCcEEccceeeEec-----ccccccC--------------------------------------
Confidence 588999999999999999989999888843 0000000
Q ss_pred CccccccccccCcceEEccccccCCCCCCceEecceeCCeeeecCCCCcccCHHHHHHHHHHHhhhhcCCCCCCCCccce
Q 009546 98 DIKELNSSERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSA 177 (532)
Q Consensus 98 ~~~~~~~~~~~~~~~~vG~ea~~~~~~~~~~l~~Pi~~G~i~~~~~~~~q~dwd~le~iw~~i~~~~L~i~~~e~~~~~~ 177 (532)
..+.+++|++|... .+.+.+++|+++|.|. ||++++.+|+|+|.+.|++++.++ +
T Consensus 43 ----------~~~~~~~G~~a~~~--~~~~~~~~P~~~G~i~---------d~~~~e~i~~~~~~~~l~~~~~~~----~ 97 (373)
T smart00268 43 ----------DAKDTFVGDEAQEK--RGGLELKYPIEHGIVE---------NWDDMEKIWDYTFFNELRVEPEEH----P 97 (373)
T ss_pred ----------CCcceEecchhhhc--CCCceecCCCcCCEEe---------CHHHHHHHHHHHHhhhcCCCCccC----e
Confidence 12457999998654 3556999999999998 999999999999987899988777 7
Q ss_pred EEecCCCCChHHHH-HHHHHHHHhcCCCEEEEeehhhHhhhhcCCceEEEEeeCCCcEEEEEeeCCeeccCCcEEecchH
Q 009546 178 ILVLPESFDNREIK-EMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGG 256 (532)
Q Consensus 178 Vlv~e~~~~~~~~r-kl~eilFE~~~~psv~~~~~avlalya~G~~tglVVDiG~~~T~VvpV~dG~vl~~s~~~~~~GG 256 (532)
|++++|.+.++..| ++++++||.|++|++++++++++|+||+|.++|||||+|++.|+|+||+||+++.++++++++||
T Consensus 98 vll~~p~~~~~~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~pv~~G~~~~~~~~~~~~GG 177 (373)
T smart00268 98 VLLTEPPMNPKSNREKILEIMFETFNFPALYIAIQAVLSLYASGRTTGLVIDSGDGVTHVVPVVDGYVLPHAIKRIDIAG 177 (373)
T ss_pred eEEecCCCCCHHHHHHHHHHhhccCCCCeEEEeccHHHHHHhCCCCEEEEEecCCCcceEEEEECCEEchhhheeccCcH
Confidence 99999988876666 49999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCcccccccccchHHHHHHHHHHceeccCCccchhhhhccccCC-CCCCCceeeeeeccCCCC
Q 009546 257 EDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDG-MPPGSHKTRLIALNVPPM 335 (532)
Q Consensus 257 ~~lt~~L~~lL~~~~~~p~~~~~~l~~~~d~~~~~~iKe~~c~v~~~e~~~~~~~~~y~~~-~p~~~~k~~~~~~~~~P~ 335 (532)
++++++|.++|+..+. .+....+.++++++||++||++.+.... ....... .+... ...+
T Consensus 178 ~~l~~~l~~~l~~~~~-------~~~~~~~~~~~~~iKe~~~~v~~~~~~~---~~~~~~~~~~~~~-----~~~~---- 238 (373)
T smart00268 178 RDLTDYLKELLSERGY-------QFNSSAEFEIVREIKEKLCYVAEDFEKE---MKKARESSESSKL-----EKTY---- 238 (373)
T ss_pred HHHHHHHHHHHHhcCC-------CCCcHHHHHHHHHhhhheeeecCChHHH---HHHhhhccccccc-----ceeE----
Confidence 9999999999987431 2233456789999999999998641110 0000000 00000 0000
Q ss_pred CCCCCcccCCCCCCCCCCCCCCCccccccCCccccCC-CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCcccCCCHHHH
Q 009546 336 GLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEEKIGLAEA 413 (532)
Q Consensus 336 ~lf~p~~~~~e~~~~p~~~~~~d~ed~l~d~~~~~~~-eR~~~~E~LF-p~~~g~~~~~~~~~~~~~~~~~~~~~gL~e~ 413 (532)
.++|+..+..+ +|+.++|.|| |+..+ .+..||+++
T Consensus 239 --------------------------~lpdg~~~~~~~er~~~~E~lf~p~~~~-----------------~~~~~i~~~ 275 (373)
T smart00268 239 --------------------------ELPDGNTIKVGNERFRIPEILFKPELIG-----------------LEQKGIHEL 275 (373)
T ss_pred --------------------------ECCCCCEEEEChHHeeCchhcCCchhcC-----------------CCcCCHHHH
Confidence 12333333333 6899999999 65543 356799999
Q ss_pred HHHHHhcCCChHHHHHhhhCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCccceEeceeeeecccCc
Q 009546 414 VTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFG 493 (532)
Q Consensus 414 I~~sI~~~~~~d~r~~L~~NIvL~GG~S~i~Gf~eRL~~EL~~~~p~~~~~~~V~v~~~~~~~~~~aW~GgSIlasL~~f 493 (532)
|.++|.+| |+|+|+.|++||+|+||+|++|||.+||++||..++|... +|++.. +.+|.+++|+||||+|++++|
T Consensus 276 i~~~i~~~-~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~---~v~v~~-~~~~~~~~W~G~silas~~~f 350 (373)
T smart00268 276 VYESIQKC-DIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKL---KVKVIA-PPERKYSVWLGGSILASLSTF 350 (373)
T ss_pred HHHHHHhC-CHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCc---eeEEec-CCCCccceEeCcccccCccch
Confidence 99999999 9999999999999999999999999999999999998654 466664 357889999999999999999
Q ss_pred cceeEeHHHHHHcCcceeeeccC
Q 009546 494 RDAWIHREDWIRNGIHIGSGRKY 516 (532)
Q Consensus 494 ~~~wITr~eYeE~G~~i~~rk~~ 516 (532)
+++||||+||+|+|.++++||||
T Consensus 351 ~~~~vtk~eY~E~G~~i~~~k~~ 373 (373)
T smart00268 351 EDMWITKKEYEEHGSQIVERKCF 373 (373)
T ss_pred hhhEEEHHHHhhhCcceEEeecC
Confidence 99999999999999999999997
No 12
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=100.00 E-value=4.8e-58 Score=481.91 Aligned_cols=365 Identities=24% Similarity=0.380 Sum_probs=296.3
Q ss_pred HHHHhhhhcCccCCccccCCCCCccccccccccccCcccccccccccccccCCCCCcccccccCCCCCCcccccCCCCCC
Q 009546 18 YDVIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRKDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRNT 97 (532)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~n~~~~p~~i~~h~~~ 97 (532)
.|.++..+|++|.+++.|...+|..+|+-. ... +.. .
T Consensus 4 iD~Gs~~~r~G~a~~~~p~~~~ps~v~~~~-----~~~-~~~------------------------------------~- 40 (371)
T cd00012 4 IDNGSGTIKAGFAGEDAPRVVFPSCVGRPK-----HQS-VMV------------------------------------G- 40 (371)
T ss_pred EECCCCeEEEEeCCCCCCceEeeccceeec-----Ccc-ccc------------------------------------c-
Confidence 578899999999999999999999998843 000 000 0
Q ss_pred CccccccccccCcceEEccccccCCCCCCceEecceeCCeeeecCCCCcccCHHHHHHHHHHHhhhhcCCCCCCCCccce
Q 009546 98 DIKELNSSERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSA 177 (532)
Q Consensus 98 ~~~~~~~~~~~~~~~~vG~ea~~~~~~~~~~l~~Pi~~G~i~~~~~~~~q~dwd~le~iw~~i~~~~L~i~~~e~~~~~~ 177 (532)
...+.++||++|...... .+.+++|+++|.+. ||++++.+|+|+|.+.|.+++.++ +
T Consensus 41 ---------~~~~~~~~G~~a~~~~~~-~~~~~~P~~~G~i~---------d~~~~e~~~~~~~~~~l~~~~~~~----~ 97 (371)
T cd00012 41 ---------AGDKDYFVGEEALEKRGL-GLELIYPIEHGIVV---------DWDDMEKIWDHLFFNELKVNPEEH----P 97 (371)
T ss_pred ---------cCCCceEEchhhhhCCCC-ceEEcccccCCEEe---------CHHHHHHHHHHHHHHhcCCCCCCC----c
Confidence 023568999999887533 69999999999999 999999999999988888888777 6
Q ss_pred EEecCCCCChHHHH-HHHHHHHHhcCCCEEEEeehhhHhhhhcCCceEEEEeeCCCcEEEEEeeCCeeccCCcEEecchH
Q 009546 178 ILVLPESFDNREIK-EMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGG 256 (532)
Q Consensus 178 Vlv~e~~~~~~~~r-kl~eilFE~~~~psv~~~~~avlalya~G~~tglVVDiG~~~T~VvpV~dG~vl~~s~~~~~~GG 256 (532)
|+++++++.++..| +++++|||.++++++++++++++|+|++|+++|||||+|++.|+|+||+||+++.+++.++++||
T Consensus 98 vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~i~pv~~G~~~~~~~~~~~~GG 177 (371)
T cd00012 98 VLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLYASGRTTGLVVDSGDGVTHVVPVYDGYVLPHAIKRLDLAG 177 (371)
T ss_pred eEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHHhcCCCeEEEEECCCCeeEEEEEECCEEchhhheeccccH
Confidence 88888888876666 59999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCcccccccccchHHHHHHHHHHceeccCCccchhhhhccccCCCCCCCceeeeeeccCCCCC
Q 009546 257 EDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMG 336 (532)
Q Consensus 257 ~~lt~~L~~lL~~~~~~p~~~~~~l~~~~d~~~~~~iKe~~c~v~~~e~~~~~~~~~y~~~~p~~~~k~~~~~~~~~P~~ 336 (532)
++++++|.++|+.++. .+....+..++++|||++|||+.+...... .... ...... .. +
T Consensus 178 ~~l~~~l~~~l~~~~~-------~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~---~~~~-~~~~~~-~~----~----- 236 (371)
T cd00012 178 RDLTRYLKELLRERGY-------ELNSSDEREIVRDIKEKLCYVALDIEEEQD---KSAK-ETSLLE-KT----Y----- 236 (371)
T ss_pred HHHHHHHHHHHHhcCC-------CccchhHHHHHHHHHHhheeecCCHHHHHH---hhhc-cCCccc-ee----E-----
Confidence 9999999999987642 233456788999999999999864211100 0000 000000 00 0
Q ss_pred CCCCcccCCCCCCCCCCCCCCCccccccCCccccCC-CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCcccCCCHHHHH
Q 009546 337 LFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEEKIGLAEAV 414 (532)
Q Consensus 337 lf~p~~~~~e~~~~p~~~~~~d~ed~l~d~~~~~~~-eR~~~~E~LF-p~~~g~~~~~~~~~~~~~~~~~~~~~gL~e~I 414 (532)
.++|+..+.++ +|+.++|.|| |+..+ ....+|+++|
T Consensus 237 -------------------------~lpd~~~i~~~~er~~~~E~lF~p~~~~-----------------~~~~~i~~~i 274 (371)
T cd00012 237 -------------------------ELPDGRTIKVGNERFRAPEILFNPSLIG-----------------SEQVGISEAI 274 (371)
T ss_pred -------------------------ECCCCeEEEEChHHhhChHhcCChhhcC-----------------CCcCCHHHHH
Confidence 12333334343 6999999999 65543 3567999999
Q ss_pred HHHHhcCCChHHHHHhhhCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCccceEeceeeeecccCcc
Q 009546 415 TSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGR 494 (532)
Q Consensus 415 ~~sI~~~~~~d~r~~L~~NIvL~GG~S~i~Gf~eRL~~EL~~~~p~~~~~~~V~v~~~~~~~~~~aW~GgSIlasL~~f~ 494 (532)
.++|..| |.|.|+.+++||+|+||+|++|||.+||++||..++|.. +...+.+.. ..+|.+++|+|||++|++++|+
T Consensus 275 ~~~i~~~-~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~-~~~~~~~~~-~~~~~~~aw~G~si~as~~~~~ 351 (371)
T cd00012 275 YSSINKC-DIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPS-KDTKVKVIA-PPERKYSVWLGGSILASLSTFQ 351 (371)
T ss_pred HHHHHhC-CHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcc-cceEEEEcc-CCCccccEEeCchhhcCchhhh
Confidence 9999999 999999999999999999999999999999999998863 111456653 4689999999999999999999
Q ss_pred ceeEeHHHHHHcCcceeeec
Q 009546 495 DAWIHREDWIRNGIHIGSGR 514 (532)
Q Consensus 495 ~~wITr~eYeE~G~~i~~rk 514 (532)
++||||+||+|+|+++++||
T Consensus 352 ~~~itk~eY~E~G~~~~~~k 371 (371)
T cd00012 352 QLWITKEEYEEHGPSIVHRK 371 (371)
T ss_pred heEeeHHHHhhhCchhEecC
Confidence 99999999999999999987
No 13
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=3.4e-57 Score=478.17 Aligned_cols=403 Identities=23% Similarity=0.370 Sum_probs=311.0
Q ss_pred HHHHHhhhhcCccCCccccCCCCCccccccccccccCcccccccccccccccCCCCCcccccccCCCCCCcccccCCCCC
Q 009546 17 AYDVIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRKDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRN 96 (532)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~n~~~~p~~i~~h~~ 96 (532)
..|.++.-+|++|.++|.|-..||-.+||-+ ..+ +|++
T Consensus 10 VIDnGS~~~k~Gfag~~~P~~V~ps~~~~~~-------~~~------~~~~----------------------------- 47 (444)
T COG5277 10 VIDNGSGTTKAGFAGNDTPTTVFPSIVGRRR-------DED------SVME----------------------------- 47 (444)
T ss_pred EEeCCCceEEeeecCCCCceeeccccccccc-------ccc------cccc-----------------------------
Confidence 4578899999999999999999999999976 000 1110
Q ss_pred CCccccccccccCcceEEccccccCCCCCCceEecceeCCeeeecCCCCcccCHHHHHHHHHHHhhh--hcCCCCCCCCc
Q 009546 97 TDIKELNSSERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTE--KLHIPRSERNL 174 (532)
Q Consensus 97 ~~~~~~~~~~~~~~~~~vG~ea~~~~~~~~~~l~~Pi~~G~i~~~~~~~~q~dwd~le~iw~~i~~~--~L~i~~~e~~~ 174 (532)
....++.+||+++....+...+++++|+++|.|. ||++++.+|+|+|++ .+..++.++
T Consensus 48 ---------~~~~~~~~v~ne~~~~~~~~~~~~~~p~~~g~i~---------~W~~~e~~w~~~~~~~~~~~~~~~~~-- 107 (444)
T COG5277 48 ---------DTEEKDTYVGNEAQNDRDNSLLELRYPIENGIIL---------NWDAMEQIWDYTFFNKGDLLPSPEEH-- 107 (444)
T ss_pred ---------cccccccccCchhhhccCCccceeecccccCccC---------CcHHHHHHHHHhhcchhhccCCCcCC--
Confidence 0135667999999876555689999999999999 999999999999988 577788888
Q ss_pred cceEEecCCCCChHHHHH-HHHHHHHhcCCCEEEEeehhhHhhhhcCCc--eEEEEeeCCCcEEEEEeeCCeeccCCcEE
Q 009546 175 YSAILVLPESFDNREIKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLS--TACVVNMGAQVTSVICVEDGVALPNTEKT 251 (532)
Q Consensus 175 ~~~Vlv~e~~~~~~~~rk-l~eilFE~~~~psv~~~~~avlalya~G~~--tglVVDiG~~~T~VvpV~dG~vl~~s~~~ 251 (532)
|++++|+++++.+.|+ +++++||+|+||+++++.+++|++|+.|.+ +|||||+|++.|+|+||+||.++.+++++
T Consensus 108 --pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~~~~g~ViD~G~~~t~v~PV~DG~~l~~a~~r 185 (444)
T COG5277 108 --PLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASGSSDETGLVIDSGDSVTHVIPVVDGIVLPKAVKR 185 (444)
T ss_pred --ceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCCCCCceEEEEcCCCceeeEeeecccccccccee
Confidence 7999999999988885 999999999999999999999999999999 99999999999999999999999999999
Q ss_pred ecchHHHHHHHHHHHHHhcCCCCCccccccccc---chHHHHHHHHHHce-------eccCCccchhhhhccccCCCCCC
Q 009546 252 LPFGGEDISRCLLWTQRHHQTWPQIRTDILTKA---MDLLMLNRIKESYC-------EIKEGEIDAVAVVHSYEDGMPPG 321 (532)
Q Consensus 252 ~~~GG~~lt~~L~~lL~~~~~~p~~~~~~l~~~---~d~~~~~~iKe~~c-------~v~~~e~~~~~~~~~y~~~~p~~ 321 (532)
+++||+++|.+|.++|+.+.. +.+.+.+... .+.++++.+|+++| |+..+ .....+...+ .+.
T Consensus 186 i~~gG~~it~~l~~lL~~~~~--~~~~~~l~~e~~~~~~ei~~~ik~e~~~~~~~~~y~~~~---~~~~~~e~~~-~~~- 258 (444)
T COG5277 186 IDIGGRDITDYLKKLLREKYP--PSRGYNLKSELVEYSSEIVNEIKEEVCETDDESAYVSLD---AEEEFEEEEE-KPA- 258 (444)
T ss_pred eecCcHHHHHHHHHHHhhccc--ccCCcccccccccccHHHHHHHHHhhccccccccchhhc---chHHHHHHhh-hhh-
Confidence 999999999999999988532 3334455444 67899999999999 55532 0000000100 010
Q ss_pred CceeeeeeccCCCCCCCCCcccCCCCCCCCCCCCCCCccccccCCccccCC-C-CCCCCCCCC-CC--CCCCCCCC----
Q 009546 322 SHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-R-RSDISDNFY-PG--INVGLPMW---- 392 (532)
Q Consensus 322 ~~k~~~~~~~~~P~~lf~p~~~~~e~~~~p~~~~~~d~ed~l~d~~~~~~~-e-R~~~~E~LF-p~--~~g~~~~~---- 392 (532)
.+.+. -.|.+. .+. ....-...++++..+.++ + ||.+||.|| |. ..+ +...
T Consensus 259 -~~~~~--------~~~~~~---~~~-------~~~~~~~~~p~~~~i~~~~e~rf~~pE~lF~pe~~~~~-l~~~~~~~ 318 (444)
T COG5277 259 -EKSTE--------STFQLS---KET-------SIAKESKELPDGEEIEFGNEERFKAPEILFKPELPISG-LEEAGKID 318 (444)
T ss_pred -hhccc--------cccccc---chh-------ccccccccCCCCceEeechhhhhhcchhhcCCcccccc-ccccccch
Confidence 00000 000000 000 000001134555566554 6 999999999 65 221 1100
Q ss_pred --------CCCCccCCCCCcccCCCHHHHHHHHHhcCCChHHHHHhhhCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCc
Q 009546 393 --------ESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAI 464 (532)
Q Consensus 393 --------~~~~~~~~~~~~~~~~gL~e~I~~sI~~~~~~d~r~~L~~NIvL~GG~S~i~Gf~eRL~~EL~~~~p~~~~~ 464 (532)
+.+ ..++.....+..||+++|.++|..| +.+.|+.|++||||+||+|++|||.+||++||..+.|...
T Consensus 319 ~~~~~~~~~~~-~~~~~~~~~~~~gl~e~v~~si~~~-~~~~r~~l~~nivitGGts~~pg~~~Rl~~el~~~~p~~~-- 394 (444)
T COG5277 319 ESKQELVAENY-EISPTNLGNDIAGLPELVYQSIQIC-DEDVRKSLYSNIVLTGGTSKIPGFAERLQKELTSLAPSIW-- 394 (444)
T ss_pred hhhhhhhhhcc-ccccccccccccchHHHHHHHHHhc-cHHHHHHHhhCEEEecCccCCCCHHHHHHHHHHhhcCCCC--
Confidence 000 1122223345678999999999999 9999999999999999999999999999999999998754
Q ss_pred ceEEEcCCCCCCccceEeceeeeecccCccceeEeHHHHHHcCcceeeeccC
Q 009546 465 DMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKY 516 (532)
Q Consensus 465 ~~V~v~~~~~~~~~~aW~GgSIlasL~~f~~~wITr~eYeE~G~~i~~rk~~ 516 (532)
+|.|.+. .+|.+.+|+||||||++++|+.+||||+||+|+|++++++|++
T Consensus 395 -~v~v~~~-~~~~~~~W~GaSila~~~~~~~~~itk~eY~e~G~~~~~~~~~ 444 (444)
T COG5277 395 -KVSVIPP-PDPSLDAWLGASILASLETFQQLWITKEEYEEHGPDILQEKRF 444 (444)
T ss_pred -ceeeecC-CchhhccccchhhhccccchhheEeeHHHhhhhhhHHHhhccC
Confidence 5677764 5999999999999999999999999999999999999999875
No 14
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=100.00 E-value=7.5e-55 Score=423.83 Aligned_cols=362 Identities=19% Similarity=0.256 Sum_probs=290.9
Q ss_pred cCCCCCCcccccCCCCCCCccccccccccCcceEEccccccCCCCCCceEecceeCCeeeecCCCCcccCHHHHHHHHHH
Q 009546 80 SSMNHGIIKESMGQHRNTDIKELNSSERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDW 159 (532)
Q Consensus 80 ~~~n~~~~p~~i~~h~~~~~~~~~~~~~~~~~~~vG~ea~~~~~~~~~~l~~Pi~~G~i~~~~~~~~q~dwd~le~iw~~ 159 (532)
+++.....|..||++... ++.+.++.|+|++..++.+...+..++|+++|.++ +|+....+|++
T Consensus 17 iG~s~~~~p~~vpNcl~k-------aK~~~rr~f~~nei~ec~D~ssL~y~rp~erGyLv---------nW~tq~~vWDy 80 (400)
T KOG0680|consen 17 IGPSTNKKPFVVPNCLAK-------AKFGRRRSFLANEIDECKDISSLFYRRPHERGYLV---------NWDTQSQVWDY 80 (400)
T ss_pred eccCCCCCceeccchhhh-------cccccchhhhhhhhhhccCccceEEeehhhcceeE---------eehhHHHHHHH
Confidence 456666779999999543 45677889999999999888899999999999999 99999999999
Q ss_pred Hhhhh-cCCCCCCCCccceEEecCCCCChHHHHH-HHHHHHHhcCCCEEEEeehhhHhhhhc---CC--------ceEEE
Q 009546 160 ILTEK-LHIPRSERNLYSAILVLPESFDNREIKE-MLSIVLRDLRFASAVVHQEGLAAVFGN---GL--------STACV 226 (532)
Q Consensus 160 i~~~~-L~i~~~e~~~~~~Vlv~e~~~~~~~~rk-l~eilFE~~~~psv~~~~~avlalya~---G~--------~tglV 226 (532)
+|.+. ++++..++ .+++++|.++-..+.+ +.|++||.|+|.+++-...+++++|-. +. ..++|
T Consensus 81 ~f~~~~~~~~~~~~----~ivlTep~~~~psi~~~t~eilFEey~fd~v~kttaa~lva~~~~~~~ne~~tt~~~~c~lV 156 (400)
T KOG0680|consen 81 CFGNPGFDVEGKDH----NIVLTEPCMTFPSIQEHTDEILFEEYQFDAVLKTTAAVLVAFTKYVRNNEDSTTTSSECCLV 156 (400)
T ss_pred HhcCCCcCcccCcc----eEEEecccccccchhhhHHHHHHHHhccceEeecCHHHhcchhhhccCCccccccccceEEE
Confidence 99643 23455666 5899999998777776 999999999999999999999998862 11 26899
Q ss_pred EeeCCCcEEEEEeeCCeeccCCcEEecchHHHHHHHHHHHHHhcCCCCCcccccccccchHHHHHHHHHHceeccCC---
Q 009546 227 VNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEG--- 303 (532)
Q Consensus 227 VDiG~~~T~VvpV~dG~vl~~s~~~~~~GG~~lt~~L~~lL~~~~~~p~~~~~~l~~~~d~~~~~~iKe~~c~v~~~--- 303 (532)
||+|++.|+|+||.+|.+..++++|+++||+.||++|++.+..++ ++.+.+..++++|||.+|||+++
T Consensus 157 IDsGysfThIip~v~g~~~~qaV~RiDvGGK~LTn~LKE~iSyR~---------lNvmdET~vVNeiKEdvcfVSqnF~~ 227 (400)
T KOG0680|consen 157 IDSGYSFTHIIPVVKGIPYYQAVKRIDVGGKALTNLLKETISYRH---------LNVMDETYVVNEIKEDVCFVSQNFKE 227 (400)
T ss_pred EeCCCceEEEehhhcCcchhhceEEeecchHHHHHHHHHHhhhhh---------hcccchhhhhhhhhhheEEechhhHH
Confidence 999999999999999999999999999999999999999998764 44567789999999999999974
Q ss_pred ccchhhhhccccCCCCCCCceeeeeeccCCCCCCCCCc---ccCCCCCCCCCCCCCCCccccccCCccccCC-CCCCCCC
Q 009546 304 EIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPK---LLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISD 379 (532)
Q Consensus 304 e~~~~~~~~~y~~~~p~~~~k~~~~~~~~~P~~lf~p~---~~~~e~~~~p~~~~~~d~ed~l~d~~~~~~~-eR~~~~E 379 (532)
+++.. +.++. +. +.. -.++.|. |... +..++..+.| .|.+.+.++ |||.+||
T Consensus 228 ~m~~~-----~~k~~-~~--~~~--i~YvLPD--F~T~k~Gyvr~~~vk~~------------~d~qii~L~nErF~IPE 283 (400)
T KOG0680|consen 228 DMDIA-----KTKFQ-EN--KVM--IDYVLPD--FSTSKRGYVRNEDVKLP------------EDEQIITLTNERFTIPE 283 (400)
T ss_pred HHHHH-----hhccc-cc--eeE--EEEecCC--cccccceeEecCCCCCC------------CCcceeeecccccccch
Confidence 22210 11000 00 000 0112221 1100 1111111111 233445554 9999999
Q ss_pred CCC-CCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHHHHhcCCChHHHHHhhhCeEEEcCCCCcCChHHHHHHHHhhhC
Q 009546 380 NFY-PGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAI 458 (532)
Q Consensus 380 ~LF-p~~~g~~~~~~~~~~~~~~~~~~~~~gL~e~I~~sI~~~~~~d~r~~L~~NIvL~GG~S~i~Gf~eRL~~EL~~~~ 458 (532)
+|| |+.++ ....||+|+|.+||..| |.++|+.|+.|||++||++++|||.+||..||++++
T Consensus 284 ilF~Psdi~-----------------I~q~GIpEAV~esl~~~-Pe~~~p~l~~NIv~iGGn~~fPgF~~RL~~Elr~l~ 345 (400)
T KOG0680|consen 284 ILFSPSDIG-----------------IQQPGIPEAVLESLSML-PEEVRPLLLENIVCIGGNSNFPGFRQRLARELRSLL 345 (400)
T ss_pred hhcChhhcC-----------------cccCCchHHHHHHHHhC-HHHHHHHHHhcEEEecCccCCcchHHHHHHHHHhhC
Confidence 999 88776 67899999999999999 999999999999999999999999999999999999
Q ss_pred CCCCCcceEEEcCCCCCCccceEeceeeeecccCccceeEeHHHHHHcCcceeeeccC
Q 009546 459 PSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKY 516 (532)
Q Consensus 459 p~~~~~~~V~v~~~~~~~~~~aW~GgSIlasL~~f~~~wITr~eYeE~G~~i~~rk~~ 516 (532)
|..+ .|+|.. +.+|..-+|.||+-++.+..|+.+||||+||+|+|.+++.+|++
T Consensus 346 P~d~---~v~V~~-p~dp~~~~W~~g~~~~~~~~~~~~~itR~dy~E~G~~~~~~~~~ 399 (400)
T KOG0680|consen 346 PADW---EVSVSV-PEDPITFAWEGGSEFAKTDSFEKAVITREDYEEHGPSWCTKKRF 399 (400)
T ss_pred Cccc---eEEEec-CCCcceeeehhccccccCcchhcceecHhhHhhcCchhhhhhcc
Confidence 9987 457764 47899999999999999999999999999999999999998865
No 15
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]
Probab=100.00 E-value=2.3e-46 Score=365.06 Aligned_cols=376 Identities=20% Similarity=0.281 Sum_probs=287.0
Q ss_pred HHHHhhhhcCccCCccccCCCCCccccccccccccCcccccccccccccccCCCCCcccccccCCCCCCcccccCCCCCC
Q 009546 18 YDVIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRKDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRNT 97 (532)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~n~~~~p~~i~~h~~~ 97 (532)
-|-+..+.|.+|+++..|+.-+|..++-- ++...|+ .. ++ |+
T Consensus 9 ~d~Gtgytklg~agn~~p~~i~p~~ia~~--------------------~~~~~s~---~~--~~-----------~~-- 50 (415)
T KOG0678|consen 9 IDNGTGYTKLGYAGNTEPQFIIPTAIAVK--------------------ESAAVSS---KA--TR-----------RV-- 50 (415)
T ss_pred eccCcceeeeeccccCCcccccceeEEec--------------------ccccccc---ch--hh-----------hh--
Confidence 46788999999999999999999988743 1122221 11 11 21
Q ss_pred CccccccccccCcceEEccccccCCCCCCceEecceeCCeeeecCCCCcccCHHHHHHHHHHHhhhhcCCCCCCCCccce
Q 009546 98 DIKELNSSERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSA 177 (532)
Q Consensus 98 ~~~~~~~~~~~~~~~~vG~ea~~~~~~~~~~l~~Pi~~G~i~~~~~~~~q~dwd~le~iw~~i~~~~L~i~~~e~~~~~~ 177 (532)
......-++++|++|+. ...|.|.|||++|.+. |||.||++|+..++++|..+|++| -
T Consensus 51 ------~~~~~dldf~ig~eal~---~~~ysl~ypiRhg~ve---------~wd~mer~~~q~ifkylr~ePedh----~ 108 (415)
T KOG0678|consen 51 ------KRGTEDLDFFIGDEALD---ATTYSLKYPIRHGQVE---------DWDLMERFWEQCIFKYLRAEPEDH----Y 108 (415)
T ss_pred ------hccccccceecccHHHh---hcccccccceeccccc---------cHHHHHHHHhhhhhhhhcCCcccc----e
Confidence 12234667999999998 3599999999999998 999999999999999999999999 5
Q ss_pred EEecCCCCChHHHHH-HHHHHHHhcCCCEEEEeehhhHhhhhcC--------CceEEEEeeCCCcEEEEEeeCCeeccCC
Q 009546 178 ILVLPESFDNREIKE-MLSIVLRDLRFASAVVHQEGLAAVFGNG--------LSTACVVNMGAQVTSVICVEDGVALPNT 248 (532)
Q Consensus 178 Vlv~e~~~~~~~~rk-l~eilFE~~~~psv~~~~~avlalya~G--------~~tglVVDiG~~~T~VvpV~dG~vl~~s 248 (532)
.|++++++++.+.|+ +.||+||.|++|.+|++.++|+|+-++= .-||+|||.|.+.|+|+||.|||++-.+
T Consensus 109 fLlteppln~penreytaeImfEsfnvpglyiAVqavLALaaswts~~v~er~ltG~VidsGdgvThvipvaEgyVigSc 188 (415)
T KOG0678|consen 109 FLLTEPPLNQPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERFLTGIVIDSGDGVTHVIPVAEGYVIGSC 188 (415)
T ss_pred EEecCCCCCCchhhHHHHHhhhhhccCchHHHHHHHHHHHHHHHHHhhhhhheeeeEEEecCCCeeEEEEeecceEEeee
Confidence 899999999999997 9999999999999999999999986541 2489999999999999999999999999
Q ss_pred cEEecchHHHHHHHHHHHHHhcCCCCCcccccccccchHHHHHHHHHHceeccCCccchhhhhccccCCCCCCCceeeee
Q 009546 249 EKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLI 328 (532)
Q Consensus 249 ~~~~~~GG~~lt~~L~~lL~~~~~~p~~~~~~l~~~~d~~~~~~iKe~~c~v~~~e~~~~~~~~~y~~~~p~~~~k~~~~ 328 (532)
++.++++|+++|.++++||++++..++. ....+.++.+||++||+.++=+ ..+..|..+ |..-.++ ..
T Consensus 189 ik~iPiagrdiT~fiQ~llRer~~~iP~-------e~sl~tak~iKe~ycy~cPdiv---kef~k~d~e-p~K~ikq-~~ 256 (415)
T KOG0678|consen 189 IKHIPIAGRDITYFIQQLLREREVGIPP-------EQSLETAKAIKEKYCYTCPDIV---KEFAKYDRE-PAKWIKQ-YT 256 (415)
T ss_pred eccccccCCchhHHHHHHhhCCCCCCCh-------HHhhhhhHHHHhhhcccCcHHH---HHHHHhccC-HHHHHHH-Hh
Confidence 9999999999999999999987643321 2346789999999999987521 112223221 1110000 00
Q ss_pred eccCCCCCCCCCcccCCCCCCCCCCCCCCCccccccCCccccCC-CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCccc
Q 009546 329 ALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEE 406 (532)
Q Consensus 329 ~~~~~P~~lf~p~~~~~e~~~~p~~~~~~d~ed~l~d~~~~~~~-eR~~~~E~LF-p~~~g~~~~~~~~~~~~~~~~~~~ 406 (532)
..++ +... ...++.+ |||--+|++| |....+ .-
T Consensus 257 ~~~~----------i~~~-------------------~~~vDvgyerFlgpEiff~Pe~a~~----------------d~ 291 (415)
T KOG0678|consen 257 GINV----------ITGK-------------------KFVVDVGYERFLGPEIFFHPEFANP----------------DF 291 (415)
T ss_pred ccch----------hcCC-------------------ceeecccHHhhcChhhhcCccccCC----------------cc
Confidence 0000 0000 0011222 4777778887 432110 23
Q ss_pred CCCHHHHHHHHHhcCCChHHHHHhhhCeEEEcCCCCcCChHHHHHHHHhhhCCC------------CCCcceEEEcCCCC
Q 009546 407 KIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPS------------NEAIDMVEVLQSRT 474 (532)
Q Consensus 407 ~~gL~e~I~~sI~~~~~~d~r~~L~~NIvL~GG~S~i~Gf~eRL~~EL~~~~p~------------~~~~~~V~v~~~~~ 474 (532)
..+|+++|-..|+.| ++|.|+-||+||+++||.+++.+|..||++++..+... ..++ .|+|+.. .
T Consensus 292 ~~~~~~~vd~~Iq~~-pIdvrr~ly~nivlsggst~fk~fgr~lqrD~kr~vd~rl~~s~~lsg~k~~~v-dvqvish-~ 368 (415)
T KOG0678|consen 292 LTPLSEVVDWVIQHC-PIDVRRPLYKNIVLSGGSTMFKDFGRRLQRDLKRLVDTRLAESEGLSGIKSKPV-DVQVLSH-L 368 (415)
T ss_pred CcchHHHhhhhhhhC-CcccchhhhhHHhhccchHHHHHhhhhccHHHHHHHHHHHHHhcccccCCCCCc-eeehhhh-h
Confidence 457999999999999 99999999999999999999999999999999765211 1123 4777753 3
Q ss_pred CCccceEeceeeeecccCccceeEeHHHHHHcCcceeee
Q 009546 475 NPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSG 513 (532)
Q Consensus 475 ~~~~~aW~GgSIlasL~~f~~~wITr~eYeE~G~~i~~r 513 (532)
-.++++|.|||+||+.+.|-..+=||++|+|+|++|+..
T Consensus 369 ~qr~avwfggs~lastpef~~~~~tk~~yee~g~si~r~ 407 (415)
T KOG0678|consen 369 LQRTAVWFGGSKLASTPEFVPACHTKEDYEEYGPSICRT 407 (415)
T ss_pred hhhcceeccCccccCCcccccccCcchhhhhhChhhhhc
Confidence 457899999999999999999999999999999999764
No 16
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=100.00 E-value=7.1e-41 Score=344.78 Aligned_cols=364 Identities=21% Similarity=0.302 Sum_probs=266.1
Q ss_pred EEccccccCCCCCCceEecceeCCeeeecCCCCcccCHHHHHHHHHHHhhhhcCCCCCCCCccceEEecCCCCChHHHH-
Q 009546 113 ICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIK- 191 (532)
Q Consensus 113 ~vG~ea~~~~~~~~~~l~~Pi~~G~i~~~~~~~~q~dwd~le~iw~~i~~~~L~i~~~e~~~~~~Vlv~e~~~~~~~~r- 191 (532)
+||++.+... ...+..+.|+++.+|+ ||+.+|.|++|+| .+||+++++ +.+|+++||..++|.+.|
T Consensus 67 ~vgnd~~~~~-~~Rs~~rSPFd~nVvt---------Nwel~E~ilDY~F-~~LG~~~~~--idhPIilTE~laNP~~~R~ 133 (645)
T KOG0681|consen 67 LVGNDILNFQ-GVRSSPRSPFDRNVVT---------NWELMEQILDYIF-GKLGVDGQG--IDHPIILTEALANPVYSRS 133 (645)
T ss_pred cccchhhhhh-hhhccCCCCCcCCccc---------cHHHHHHHHHHHH-HhcCCCccC--CCCCeeeehhccChHHHHH
Confidence 7787766542 2357789999999998 9999999999999 789998854 345899999999999988
Q ss_pred HHHHHHHHhcCCCEEEEeehhhHhhhh-cCC---ceEEEEeeCCCcEEEEEeeCCeeccCCcEEecchHHHHHHHHHHHH
Q 009546 192 EMLSIVLRDLRFASAVVHQEGLAAVFG-NGL---STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQ 267 (532)
Q Consensus 192 kl~eilFE~~~~psv~~~~~avlalya-~G~---~tglVVDiG~~~T~VvpV~dG~vl~~s~~~~~~GG~~lt~~L~~lL 267 (532)
+|.|+|||.||||+|.+...++.|+|. .+. .+|+||++|++.|+|+||.||..+...++|+++||.++..||.+||
T Consensus 134 ~m~elLFE~YgvP~V~yGIDslfS~~hN~~~~~~~~~liis~g~~~T~vipvldG~~il~~~kRiN~GG~qa~dYL~~Lm 213 (645)
T KOG0681|consen 134 EMVELLFETYGVPKVAYGIDSLFSFYHNYGKSSNKSGLIISMGHSATHVIPVLDGRLILKDVKRINWGGYQAGDYLSRLM 213 (645)
T ss_pred HHHHHHHHHcCCcceeechhhHHHHhhccCcccCcceEEEecCCCcceeEEEecCchhhhcceeeccCcchHHHHHHHHH
Confidence 499999999999999999999999994 333 3699999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCcccccccccchHHHHHHHHHHceeccCC---ccchhhhhcccc-----------------------------
Q 009546 268 RHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEG---EIDAVAVVHSYE----------------------------- 315 (532)
Q Consensus 268 ~~~~~~p~~~~~~l~~~~d~~~~~~iKe~~c~v~~~---e~~~~~~~~~y~----------------------------- 315 (532)
+.+ +|.+ -...++..++.+++.+|||+.+ |+........|+
T Consensus 214 q~K--yp~~-----~~~~t~sk~E~l~~eHcyis~DY~eei~~~l~~d~~d~~~~~~qlP~~evl~~~e~~l~Ae~kqek 286 (645)
T KOG0681|consen 214 QLK--YPFH-----LNAFTGSKAERLLHEHCYISPDYREEIIKILEMDYYDENRNYFQLPYTEVLAEVELALTAEKKQEK 286 (645)
T ss_pred hcc--Cccc-----hhhcCHHHHHHHhhhhceeCcchHHHHHHHhhhhhhhccceEEecccccccchhhhhccHHHHHHH
Confidence 875 3321 1235677888888889988764 110000000000
Q ss_pred ----------------C--------------------C-CCCCCceeeeeeccCCCCCCCCC--------cccC------
Q 009546 316 ----------------D--------------------G-MPPGSHKTRLIALNVPPMGLFYP--------KLLV------ 344 (532)
Q Consensus 316 ----------------~--------------------~-~p~~~~k~~~~~~~~~P~~lf~p--------~~~~------ 344 (532)
+ + .+|-..++ .-.++ |..|... +++.
T Consensus 287 Rlq~~a~lkrv~k~~~re~~redeqql~~~~kaq~e~e~~~D~~q~~--~ll~v-~~eL~~d~lk~k~~qr~lkas~dar 363 (645)
T KOG0681|consen 287 RLQEQAALKRVEKINARENRREDEQQLESYNKAQGEQESNLDLEQKF--PLLNV-PAELDEDQLKEKKKQRILKASTDAR 363 (645)
T ss_pred HHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHhhhchhcCccHhhhc--hhhcc-hhhhCHHHHHHHHHHHHHHhhhhhh
Confidence 0 0 00000000 00000 0000000 0000
Q ss_pred -------C-CC---------------------------------------CC--------------------CCCC---C
Q 009546 345 -------P-DV---------------------------------------YP--------------------PPPR---S 354 (532)
Q Consensus 345 -------~-e~---------------------------------------~~--------------------~p~~---~ 354 (532)
. |. .. ++.+ .
T Consensus 364 ~rar~eke~Er~~k~~~~r~~~~~swl~e~r~k~~~ller~~~kk~lk~e~~~r~s~~Sq~rmr~~~~La~~~~~rrk~~ 443 (645)
T KOG0681|consen 364 LRARVEKELERLNKLEEEREENLISWLEELREKLEKLLERISQKKRLKQELKDRKSHASQLRMRALARLAYEQVVRRKRK 443 (645)
T ss_pred ccccccchHHHhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhhHHHHhhhHHHHHHHhcc
Confidence 0 00 00 0000 0
Q ss_pred -C----C--CC-----ccc-------cc------------------------cC------------CccccCC-CCCCCC
Q 009546 355 -W----F--ND-----YED-------ML------------------------ED------------TWHTDFP-RRSDIS 378 (532)
Q Consensus 355 -~----~--~d-----~ed-------~l------------------------~d------------~~~~~~~-eR~~~~ 378 (532)
. | .| ||| .+ .| .+++.++ ||+++|
T Consensus 444 ~~t~D~fg~~Dedw~vYe~lee~~~~~~~dl~~l~~~L~e~Dp~F~~~~~~~~d~~~~~~p~~~~e~~qlh~nVEriRvP 523 (645)
T KOG0681|consen 444 EATPDNFGARDEDWDVYEDLEEENKSILEDLKSLNHELLEFDPHFTQYVEGTTDPRNGVLPGFTAEDYQLHLNVERIRVP 523 (645)
T ss_pred cCCccccccchhhHHHHHHhhhhhhhHHHHHHHHHHHHHhhCcccccccccccCcccCcchhHHHhhhhhhhcceeeccc
Confidence 0 0 00 110 00 00 0111233 799999
Q ss_pred CCCC-CCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHHHHhcCCChHHHHHhhhCeEEEcCCCCcCChHHHHHHHHhhh
Q 009546 379 DNFY-PGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHA 457 (532)
Q Consensus 379 E~LF-p~~~g~~~~~~~~~~~~~~~~~~~~~gL~e~I~~sI~~~~~~d~r~~L~~NIvL~GG~S~i~Gf~eRL~~EL~~~ 457 (532)
|++| |+.+| .++.||.|++-.++.+. |.|.+.+|.+||+||||+|++||+.+||..||..+
T Consensus 524 EIiFqPsiiG-----------------~dQaGl~Ei~~~il~r~-p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~m 585 (645)
T KOG0681|consen 524 EIIFQPSIIG-----------------IDQAGLAEIMDTILRRY-PHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSM 585 (645)
T ss_pred eeeecccccc-----------------chhhhHHHHHHHHHHhC-chhhhHhhhhheEeecccccCcCHHHHHHHHhhee
Confidence 9999 88877 68999999999999998 99999999999999999999999999999999999
Q ss_pred CCCCCCcceEEEcCCCCCCccceEeceeeeecccCccceeEeHHHHHHcCcceeeeccCCCcce
Q 009546 458 IPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKYKDSYF 521 (532)
Q Consensus 458 ~p~~~~~~~V~v~~~~~~~~~~aW~GgSIlasL~~f~~~wITr~eYeE~G~~i~~rk~~~~~~~ 521 (532)
.|-.. +|+|.- ..+|...+|+|||.+|.-.+|..-||||+||+|+|...+..++..-.|+
T Consensus 586 rP~gS---~i~V~r-asdP~LDAW~GA~~~a~n~~f~~~~~Tr~dy~E~G~e~~kEh~~~n~~~ 645 (645)
T KOG0681|consen 586 RPVGS---SINVVR-ASDPVLDAWRGASAWAANPTFTLTQITRKDYEEKGEEYLKEHVASNIYY 645 (645)
T ss_pred cccCC---ceEEEe-cCCcchhhhhhhHHhhcCcccchhhhhHHhhhhhhHHHHHHHhhccccC
Confidence 98765 456663 4689999999999999999999999999999999999999888776553
No 17
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=99.95 E-value=8.2e-28 Score=249.21 Aligned_cols=275 Identities=18% Similarity=0.199 Sum_probs=198.0
Q ss_pred cceEEccccccCCC--CCCceEecceeCCeeeecCCCCcccCHHHHHHHHHHHhhhhcCCCCCCCCccceEEecCCCCCh
Q 009546 110 REFICGEEALRVSP--TEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDN 187 (532)
Q Consensus 110 ~~~~vG~ea~~~~~--~~~~~l~~Pi~~G~i~~~~~~~~q~dwd~le~iw~~i~~~~L~i~~~e~~~~~~Vlv~e~~~~~ 187 (532)
+.++||++|..... ...+.+.+||++|.+. ||+.++.+|+|+|.+.+...+.+.+ .++++.|...+
T Consensus 45 ~~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~---------d~~~~e~ll~~~~~~~~~~~~~~~~---~vvit~P~~~~ 112 (335)
T PRK13930 45 KVLAVGEEAKEMLGRTPGNIEAIRPLKDGVIA---------DFEATEAMLRYFIKKARGRRFFRKP---RIVICVPSGIT 112 (335)
T ss_pred eEEEEcHHHHHhhhcCCCCeEEeecCCCCeEc---------CHHHHHHHHHHHHHHHhhcccCCCC---cEEEEECCCCC
Confidence 46899999986532 3568899999999998 9999999999999544443333332 67888777766
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeehhhHhhhhcCC-----ceEEEEeeCCCcEEEEEeeCCeeccCCcEEecchHHHHHHH
Q 009546 188 REIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRC 262 (532)
Q Consensus 188 ~~~rkl~eilFE~~~~psv~~~~~avlalya~G~-----~tglVVDiG~~~T~VvpV~dG~vl~~s~~~~~~GG~~lt~~ 262 (532)
...|+.++.+||.+|++.+++++++++|+|++|. .+++|||+|+++|+|++|.+|.++. ....++||+++|+.
T Consensus 113 ~~~r~~~~~~~e~~g~~~~~lv~ep~AAa~a~g~~~~~~~~~lVvDiG~gttdvs~v~~g~~~~--~~~~~lGG~~id~~ 190 (335)
T PRK13930 113 EVERRAVREAAEHAGAREVYLIEEPMAAAIGAGLPVTEPVGNMVVDIGGGTTEVAVISLGGIVY--SESIRVAGDEMDEA 190 (335)
T ss_pred HHHHHHHHHHHHHcCCCeEEecccHHHHHHhcCCCcCCCCceEEEEeCCCeEEEEEEEeCCEEe--ecCcCchhHHHHHH
Confidence 6667777778999999999999999999999997 4689999999999999999998875 45789999999999
Q ss_pred HHHHHHhcCCCCCcccccccccchHHHHHHHHHHceeccCCccchhhhhccccCCCCCCCceeeeeeccCCCCCCCCCcc
Q 009546 263 LLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKL 342 (532)
Q Consensus 263 L~~lL~~~~~~p~~~~~~l~~~~d~~~~~~iKe~~c~v~~~e~~~~~~~~~y~~~~p~~~~k~~~~~~~~~P~~lf~p~~ 342 (532)
|.+++..+.. + ..+.+.++++|+++|++..+.... .. ....... ..++ |
T Consensus 191 l~~~l~~~~~--------~--~~~~~~ae~~K~~~~~~~~~~~~~-----~~-----------~~~~~~~-~~~~--~-- 239 (335)
T PRK13930 191 IVQYVRRKYN--------L--LIGERTAEEIKIEIGSAYPLDEEE-----SM-----------EVRGRDL-VTGL--P-- 239 (335)
T ss_pred HHHHHHHHhC--------C--CCCHHHHHHHHHHhhcCcCCCCCc-----eE-----------EEECccC-CCCC--C--
Confidence 9998876421 1 134468999999999987531000 00 0000000 0000 0
Q ss_pred cCCCCCCCCCCCCCCCccccccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHHHHhcCC
Q 009546 343 LVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTG 422 (532)
Q Consensus 343 ~~~e~~~~p~~~~~~d~ed~l~d~~~~~~~eR~~~~E~LFp~~~g~~~~~~~~~~~~~~~~~~~~~gL~e~I~~sI~~~~ 422 (532)
+ .+.++ |....|.+|+. ..++.+.|.++|.+|
T Consensus 240 ----------------------~--~~~i~-~~~~~e~i~~~----------------------~~~i~~~i~~~l~~~- 271 (335)
T PRK13930 240 ----------------------K--TIEIS-SEEVREALAEP----------------------LQQIVEAVKSVLEKT- 271 (335)
T ss_pred ----------------------e--eEEEC-HHHHHHHHHHH----------------------HHHHHHHHHHHHHhC-
Confidence 0 00000 11112444432 237899999999998
Q ss_pred ChHHHHHhhhC-eEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCccceEeceeeeec
Q 009546 423 RIDLQRKLFCS-IQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGI 489 (532)
Q Consensus 423 ~~d~r~~L~~N-IvL~GG~S~i~Gf~eRL~~EL~~~~p~~~~~~~V~v~~~~~~~~~~aW~GgSIlas 489 (532)
+.+.+..++.| |+|+||+|++|||.+||++++.. ++.+. .+|..++=+|+++++.
T Consensus 272 ~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~~---------~v~~~---~~p~~ava~Ga~~~~~ 327 (335)
T PRK13930 272 PPELAADIIDRGIVLTGGGALLRGLDKLLSEETGL---------PVHIA---EDPLTCVARGTGKALE 327 (335)
T ss_pred CHHHhhHHHhCCEEEECchhcchhHHHHHHHHHCC---------Cceec---CCHHHHHHHHHHHHHh
Confidence 89999999998 99999999999999999999851 23333 2455666678877763
No 18
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=99.95 E-value=1.5e-27 Score=247.18 Aligned_cols=274 Identities=18% Similarity=0.158 Sum_probs=199.1
Q ss_pred cceEEccccccCCC--CCCceEecceeCCeeeecCCCCcccCHHHHHHHHHHHhhhhcCCCCCCCCccceEEecCCCCCh
Q 009546 110 REFICGEEALRVSP--TEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDN 187 (532)
Q Consensus 110 ~~~~vG~ea~~~~~--~~~~~l~~Pi~~G~i~~~~~~~~q~dwd~le~iw~~i~~~~L~i~~~e~~~~~~Vlv~e~~~~~ 187 (532)
+-++||++|.+... ...+.+.+||++|.+. ||+.++.+|+|+|.+.++......+ +++++.|...+
T Consensus 43 ~~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~---------d~~~~~~~~~~~l~~~~~~~~~~~~---~~vitvP~~~~ 110 (333)
T TIGR00904 43 SILAVGHEAKEMLGKTPGNIVAIRPMKDGVIA---------DFEVTEKMIKYFIKQVHSRKSFFKP---RIVICVPSGIT 110 (333)
T ss_pred eEEEEhHHHHHhhhcCCCCEEEEecCCCCEEE---------cHHHHHHHHHHHHHHHhcccccCCC---cEEEEeCCCCC
Confidence 44889999988632 3688999999999998 9999999999999776654333333 57888777666
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeehhhHhhhhcCC-----ceEEEEeeCCCcEEEEEe-eCCeeccCCcEEecchHHHHHH
Q 009546 188 REIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICV-EDGVALPNTEKTLPFGGEDISR 261 (532)
Q Consensus 188 ~~~rkl~eilFE~~~~psv~~~~~avlalya~G~-----~tglVVDiG~~~T~VvpV-~dG~vl~~s~~~~~~GG~~lt~ 261 (532)
...|+.++.+||.+|++.+++++++++|+|++|. .+++|||+|+++|+|++| ++|+++... .++||+++|+
T Consensus 111 ~~~r~~~~~~~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lVvDiG~gttdvs~v~~~~~~~~~~---~~lGG~did~ 187 (333)
T TIGR00904 111 PVERRAVKESALSAGAREVYLIEEPMAAAIGAGLPVEEPTGSMVVDIGGGTTEVAVISLGGIVVSRS---IRVGGDEFDE 187 (333)
T ss_pred HHHHHHHHHHHHHcCCCeEEEecCHHHHHHhcCCcccCCceEEEEEcCCCeEEEEEEEeCCEEecCC---ccchHHHHHH
Confidence 6667778889999999999999999999999997 578999999999999999 888887654 4899999999
Q ss_pred HHHHHHHhcCCCCCcccccccccchHHHHHHHHHHceeccCCccchhhhhccccCCCCCCCceeeeeeccCCCCCCCCCc
Q 009546 262 CLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPK 341 (532)
Q Consensus 262 ~L~~lL~~~~~~p~~~~~~l~~~~d~~~~~~iKe~~c~v~~~e~~~~~~~~~y~~~~p~~~~k~~~~~~~~~P~~lf~p~ 341 (532)
.|.+++..+. . ...+.+.++++|+++|++..+..... ..+....+.. + +
T Consensus 188 ~l~~~l~~~~--------~--~~~~~~~ae~lK~~l~~~~~~~~~~~----~~~~~~~~~~--~----------~----- 236 (333)
T TIGR00904 188 AIINYIRRTY--------N--LLIGEQTAERIKIEIGSAYPLNDEPR----KMEVRGRDLV--T----------G----- 236 (333)
T ss_pred HHHHHHHHHh--------c--ccCCHHHHHHHHHHHhcccccccccc----ceeecCcccc--C----------C-----
Confidence 9998876431 1 12345789999999998764200000 0000000000 0 0
Q ss_pred ccCCCCCCCCCCCCCCCccccccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHHHHhcC
Q 009546 342 LLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILST 421 (532)
Q Consensus 342 ~~~~e~~~~p~~~~~~d~ed~l~d~~~~~~~eR~~~~E~LFp~~~g~~~~~~~~~~~~~~~~~~~~~gL~e~I~~sI~~~ 421 (532)
++++..+ + |..+.|.+|+. ..++.+.|.+++.+|
T Consensus 237 ---------------------~~~~~~i--~-~~~~~e~i~~~----------------------~~~i~~~i~~~l~~~ 270 (333)
T TIGR00904 237 ---------------------LPRTIEI--T-SVEVREALQEP----------------------VNQIVEAVKRTLEKT 270 (333)
T ss_pred ---------------------CCeEEEE--C-HHHHHHHHHHH----------------------HHHHHHHHHHHHHhC
Confidence 0000000 0 11234455532 136899999999999
Q ss_pred CChHHHHHhhh-CeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCccceEeceeeee
Q 009546 422 GRIDLQRKLFC-SIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLG 488 (532)
Q Consensus 422 ~~~d~r~~L~~-NIvL~GG~S~i~Gf~eRL~~EL~~~~p~~~~~~~V~v~~~~~~~~~~aW~GgSIla 488 (532)
+.+.+..+++ +|+|+||+|++|||.+||++++.. +|.+. .+|..++=+|+++++
T Consensus 271 -~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~~~---------~v~~~---~~P~~~va~Ga~~~~ 325 (333)
T TIGR00904 271 -PPELAADIVERGIVLTGGGALLRNLDKLLSKETGL---------PVIVA---DDPLLCVAKGTGKAL 325 (333)
T ss_pred -CchhhhhhccCCEEEECcccchhhHHHHHHHHHCC---------Cceec---CChHHHHHHHHHHHH
Confidence 8999999997 799999999999999999999842 23333 356677778887775
No 19
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=99.94 E-value=7.4e-27 Score=242.07 Aligned_cols=272 Identities=18% Similarity=0.221 Sum_probs=197.1
Q ss_pred cceEEccccccCC--CCCCceEecceeCCeeeecCCCCcccCHHHHHHHHHHHhhhhcCCCCCCCCccceEEecCCCCCh
Q 009546 110 REFICGEEALRVS--PTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDN 187 (532)
Q Consensus 110 ~~~~vG~ea~~~~--~~~~~~l~~Pi~~G~i~~~~~~~~q~dwd~le~iw~~i~~~~L~i~~~e~~~~~~Vlv~e~~~~~ 187 (532)
+.++||++|.... ....+.+.+||++|.+. ||+.++.+|+++|.+.++. +.+++ .++++.|...+
T Consensus 42 ~~~~vG~~a~~~~~~~~~~~~~~~pi~~G~i~---------d~~~~~~ll~~~~~~~~~~-~~~~~---~~vi~vP~~~~ 108 (334)
T PRK13927 42 KVLAVGEEAKQMLGRTPGNIVAIRPMKDGVIA---------DFDVTEKMLKYFIKKVHKN-FRPSP---RVVICVPSGIT 108 (334)
T ss_pred eEEEecHHHHHHhhcCCCCEEEEecCCCCeec---------CHHHHHHHHHHHHHHHhhc-cCCCC---cEEEEeCCCCC
Confidence 4579999998763 23578899999999998 9999999999999877766 54554 46777666555
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeehhhHhhhhcCC-----ceEEEEeeCCCcEEEEEe-eCCeeccCCcEEecchHHHHHH
Q 009546 188 REIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICV-EDGVALPNTEKTLPFGGEDISR 261 (532)
Q Consensus 188 ~~~rkl~eilFE~~~~psv~~~~~avlalya~G~-----~tglVVDiG~~~T~VvpV-~dG~vl~~s~~~~~~GG~~lt~ 261 (532)
...|++++.+||.+|++.+++++++++|+|++|. ..++|||+|+++|+|++| ++|++..++ .++||+++|+
T Consensus 109 ~~~r~~~~~a~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lvvDiGggttdvs~v~~~~~~~~~~---~~lGG~~id~ 185 (334)
T PRK13927 109 EVERRAVRESALGAGAREVYLIEEPMAAAIGAGLPVTEPTGSMVVDIGGGTTEVAVISLGGIVYSKS---VRVGGDKFDE 185 (334)
T ss_pred HHHHHHHHHHHHHcCCCeeccCCChHHHHHHcCCcccCCCeEEEEEeCCCeEEEEEEecCCeEeeCC---cCChHHHHHH
Confidence 5556799999999999999999999999999997 357999999999999999 788887665 4799999999
Q ss_pred HHHHHHHhcCCCCCcccccccccchHHHHHHHHHHceeccCCccchhhhhccccCCCCCCCceeeeeeccCCCCCCCCCc
Q 009546 262 CLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPK 341 (532)
Q Consensus 262 ~L~~lL~~~~~~p~~~~~~l~~~~d~~~~~~iKe~~c~v~~~e~~~~~~~~~y~~~~p~~~~k~~~~~~~~~P~~lf~p~ 341 (532)
.|.+++..+. .+ ..+.+.++++|+++|++..++-.. . ..+..... ..++ |
T Consensus 186 ~l~~~l~~~~--------~~--~~~~~~ae~iK~~~~~~~~~~~~~-----~-----------~~~~~~~~-~~~~--~- 235 (334)
T PRK13927 186 AIINYVRRNY--------NL--LIGERTAERIKIEIGSAYPGDEVL-----E-----------MEVRGRDL-VTGL--P- 235 (334)
T ss_pred HHHHHHHHHh--------Cc--CcCHHHHHHHHHHhhccCCCCCCc-----e-----------EEEeCccc-CCCC--C-
Confidence 9998886532 11 134578999999999876421000 0 00000000 0000 0
Q ss_pred ccCCCCCCCCCCCCCCCccccccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHHHHhcC
Q 009546 342 LLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILST 421 (532)
Q Consensus 342 ~~~~e~~~~p~~~~~~d~ed~l~d~~~~~~~eR~~~~E~LFp~~~g~~~~~~~~~~~~~~~~~~~~~gL~e~I~~sI~~~ 421 (532)
. .+.++ |....|.+|+. ..+|.+.|.++|.+|
T Consensus 236 -----------------------~--~~~i~-~~~~~e~i~~~----------------------~~~i~~~i~~~l~~~ 267 (334)
T PRK13927 236 -----------------------K--TITIS-SNEIREALQEP----------------------LSAIVEAVKVALEQT 267 (334)
T ss_pred -----------------------e--EEEEC-HHHHHHHHHHH----------------------HHHHHHHHHHHHHHC
Confidence 0 00000 11112444421 236899999999998
Q ss_pred CChHHHHHhhhC-eEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCccceEeceeeee
Q 009546 422 GRIDLQRKLFCS-IQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLG 488 (532)
Q Consensus 422 ~~~d~r~~L~~N-IvL~GG~S~i~Gf~eRL~~EL~~~~p~~~~~~~V~v~~~~~~~~~~aW~GgSIla 488 (532)
+.++++.++++ |+|+||+|++|||.+||++++.. +|.+. .+|..++=.|+++++
T Consensus 268 -~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~~~---------~v~~~---~~P~~ava~Ga~~~~ 322 (334)
T PRK13927 268 -PPELAADIVDRGIVLTGGGALLRGLDKLLSEETGL---------PVHVA---EDPLTCVARGTGKAL 322 (334)
T ss_pred -CchhhhhhhcCCEEEECchhhhhHHHHHHHHHHCC---------CcEec---CCHHHHHHHHHHHHH
Confidence 88999999985 99999999999999999999841 23444 245677777887765
No 20
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=99.93 E-value=4.3e-25 Score=228.92 Aligned_cols=264 Identities=16% Similarity=0.215 Sum_probs=188.7
Q ss_pred ceEEccccccCCCC--CCceEecceeCCeeeecCCCCcccCHHHHHHHHHHHhhh---hcCCCCCCCCccceEEecCCCC
Q 009546 111 EFICGEEALRVSPT--EPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTE---KLHIPRSERNLYSAILVLPESF 185 (532)
Q Consensus 111 ~~~vG~ea~~~~~~--~~~~l~~Pi~~G~i~~~~~~~~q~dwd~le~iw~~i~~~---~L~i~~~e~~~~~~Vlv~e~~~ 185 (532)
-++||++|.....+ ....+.+|+++|.|. |||.++.+|++++.+ .++.++... +++++.|++
T Consensus 42 ~~~vG~~A~~~~~~~p~~~~~~~pi~~G~I~---------d~d~~~~~l~~~~~~~~~~l~~~~~~~----~vvitvP~~ 108 (335)
T PRK13929 42 VLAIGTEAKNMIGKTPGKIVAVRPMKDGVIA---------DYDMTTDLLKQIMKKAGKNIGMTFRKP----NVVVCTPSG 108 (335)
T ss_pred EEEeCHHHHHhhhcCCCcEEEEecCCCCccC---------CHHHHHHHHHHHHHHHHHhcCCCCCCC----eEEEEcCCC
Confidence 37999999876422 578889999999998 999999999999973 566655444 578877776
Q ss_pred ChHHHHH-HHHHHHHhcCCCEEEEeehhhHhhhhcC-----CceEEEEeeCCCcEEEEEe-eCCeeccCCcEEecchHHH
Q 009546 186 DNREIKE-MLSIVLRDLRFASAVVHQEGLAAVFGNG-----LSTACVVNMGAQVTSVICV-EDGVALPNTEKTLPFGGED 258 (532)
Q Consensus 186 ~~~~~rk-l~eilFE~~~~psv~~~~~avlalya~G-----~~tglVVDiG~~~T~VvpV-~dG~vl~~s~~~~~~GG~~ 258 (532)
.+...|+ +.+ +||.+|++.++++.++++|++++| ..+++|||+|+++|+|++| ++|.+... .+++||++
T Consensus 109 ~~~~~R~~l~~-a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lvvDiG~gtt~v~vi~~~~~~~~~---~~~~GG~~ 184 (335)
T PRK13929 109 STAVERRAISD-AVKNCGAKNVHLIEEPVAAAIGADLPVDEPVANVVVDIGGGTTEVAIISFGGVVSCH---SIRIGGDQ 184 (335)
T ss_pred CCHHHHHHHHH-HHHHcCCCeeEeecCHHHHHHhcCCCcCCCceEEEEEeCCCeEEEEEEEeCCEEEec---CcCCHHHH
Confidence 5555555 666 999999999999999999999998 3578999999999999999 67766544 35899999
Q ss_pred HHHHHHHHHHhcCCCCCcccccccccchHHHHHHHHHHceeccCCccchhhhhc--cccCCCCCCCceeeeeeccCCCCC
Q 009546 259 ISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVH--SYEDGMPPGSHKTRLIALNVPPMG 336 (532)
Q Consensus 259 lt~~L~~lL~~~~~~p~~~~~~l~~~~d~~~~~~iKe~~c~v~~~e~~~~~~~~--~y~~~~p~~~~k~~~~~~~~~P~~ 336 (532)
+|+.|.+.+.... .+ ..+...++++|+++|++..+..+...... .+..++|.
T Consensus 185 id~~l~~~l~~~~--------~~--~~~~~~AE~iK~~l~~~~~~~~~~~~~v~g~~~~~~~p~---------------- 238 (335)
T PRK13929 185 LDEDIVSFVRKKY--------NL--LIGERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPK---------------- 238 (335)
T ss_pred HHHHHHHHHHHHh--------Cc--CcCHHHHHHHHHHHcCCCCCCCCceEEEeCCccCCCCCe----------------
Confidence 9999999886532 12 12457899999999987542100000000 00000000
Q ss_pred CCCCcccCCCCCCCCCCCCCCCccccccCCccccCC-CCCC--CCCCCCCCCCCCCCCCCCCCccCCCCCcccCCCHHHH
Q 009546 337 LFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSD--ISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEA 413 (532)
Q Consensus 337 lf~p~~~~~e~~~~p~~~~~~d~ed~l~d~~~~~~~-eR~~--~~E~LFp~~~g~~~~~~~~~~~~~~~~~~~~~gL~e~ 413 (532)
.+.++ +++. +.|.+ ..|.++
T Consensus 239 -------------------------------~i~i~~~~~~~~i~~~l--------------------------~~i~~~ 261 (335)
T PRK13929 239 -------------------------------TITLESKEIQGAMRESL--------------------------LHILEA 261 (335)
T ss_pred -------------------------------EEEEcHHHHHHHHHHHH--------------------------HHHHHH
Confidence 00000 0110 11111 248999
Q ss_pred HHHHHhcCCChHHHHHhhh-CeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCccceEeceeee
Q 009546 414 VTSSILSTGRIDLQRKLFC-SIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVL 487 (532)
Q Consensus 414 I~~sI~~~~~~d~r~~L~~-NIvL~GG~S~i~Gf~eRL~~EL~~~~p~~~~~~~V~v~~~~~~~~~~aW~GgSIl 487 (532)
|.+++.+| +.+++..+++ +|+|+||+|++|||.+||++++.. .|.+. .+|..++=+|+...
T Consensus 262 i~~~L~~~-~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~~~---------~v~~~---~~P~~~Va~Ga~~~ 323 (335)
T PRK13929 262 IRATLEDC-PPELSGDIVDRGVILTGGGALLNGIKEWLSEEIVV---------PVHVA---ANPLESVAIGTGRS 323 (335)
T ss_pred HHHHHHhC-CcccchhhcCCCEEEEchhhhhhhHHHHHHHHHCC---------CceeC---CCHHHHHHHHHHHH
Confidence 99999999 8999999998 699999999999999999999852 22332 35666777775443
No 21
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=99.90 E-value=4.3e-23 Score=214.18 Aligned_cols=271 Identities=18% Similarity=0.207 Sum_probs=192.7
Q ss_pred cceEEccccccCCCC--CCceEecceeCCeeeecCCCCcccCHHHHHHHHHHHhhhhcCCC-CCCCCccceEEecCCCCC
Q 009546 110 REFICGEEALRVSPT--EPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIP-RSERNLYSAILVLPESFD 186 (532)
Q Consensus 110 ~~~~vG~ea~~~~~~--~~~~l~~Pi~~G~i~~~~~~~~q~dwd~le~iw~~i~~~~L~i~-~~e~~~~~~Vlv~e~~~~ 186 (532)
+-+++|++|.+...+ ..+.+.+|+++|.|. ||+.++.+|+|++ +++... +.+++ .++++.|...
T Consensus 40 ~i~~vG~~A~~~~~~~p~~~~~~~pi~~G~i~---------d~~~~~~~l~~~~-~~~~~~~~~~~p---~~vitvP~~~ 106 (336)
T PRK13928 40 KVLAVGEEARRMVGRTPGNIVAIRPLRDGVIA---------DYDVTEKMLKYFI-NKACGKRFFSKP---RIMICIPTGI 106 (336)
T ss_pred eEEEecHHHHHhhhcCCCCEEEEccCCCCeEe---------cHHHHHHHHHHHH-HHHhccCCCCCC---eEEEEeCCCC
Confidence 346899999876422 578889999999998 9999999999999 445433 33443 3777766555
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeehhhHhhhhcCC-----ceEEEEeeCCCcEEEEEeeCCeeccCCcEEecchHHHHHH
Q 009546 187 NREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISR 261 (532)
Q Consensus 187 ~~~~rkl~eilFE~~~~psv~~~~~avlalya~G~-----~tglVVDiG~~~T~VvpV~dG~vl~~s~~~~~~GG~~lt~ 261 (532)
+...|++++.+|+.+|++.+.+++++++|+|++|. ..++|||+|+++|+|++|.+|.++.. ..+++||+++|+
T Consensus 107 ~~~~r~~~~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lVvDiGggttdvsvv~~g~~~~~--~~~~lGG~did~ 184 (336)
T PRK13928 107 TSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLDISQPSGNMVVDIGGGTTDIAVLSLGGIVTS--SSIKVAGDKFDE 184 (336)
T ss_pred CHHHHHHHHHHHHHcCCCceEecccHHHHHHHcCCcccCCCeEEEEEeCCCeEEEEEEEeCCEEEe--CCcCCHHHHHHH
Confidence 55555799999999999999999999999999997 56899999999999999998877654 367999999999
Q ss_pred HHHHHHHhcCCCCCcccccccccchHHHHHHHHHHceeccCCccchhhhh--ccccCCCCCCCceeeeeeccCCCCCCCC
Q 009546 262 CLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVV--HSYEDGMPPGSHKTRLIALNVPPMGLFY 339 (532)
Q Consensus 262 ~L~~lL~~~~~~p~~~~~~l~~~~d~~~~~~iKe~~c~v~~~e~~~~~~~--~~y~~~~p~~~~k~~~~~~~~~P~~lf~ 339 (532)
.|.+.+..+. .+ ..+...++++|+++|.+..+........ .....++|..
T Consensus 185 ~i~~~l~~~~--------~~--~~~~~~ae~lK~~~~~~~~~~~~~~~~v~g~~~~~~~~~~------------------ 236 (336)
T PRK13928 185 AIIRYIRKKY--------KL--LIGERTAEEIKIKIGTAFPGAREEEMEIRGRDLVTGLPKT------------------ 236 (336)
T ss_pred HHHHHHHHHh--------ch--hcCHHHHHHHHHHhcccccccCCcEEEEecccccCCCceE------------------
Confidence 9998876431 11 1334679999999987643210000000 0000000000
Q ss_pred CcccCCCCCCCCCCCCCCCccccccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHHHHh
Q 009546 340 PKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSIL 419 (532)
Q Consensus 340 p~~~~~e~~~~p~~~~~~d~ed~l~d~~~~~~~eR~~~~E~LFp~~~g~~~~~~~~~~~~~~~~~~~~~gL~e~I~~sI~ 419 (532)
+.++ |....|.+++. ...+.+.|.+++.
T Consensus 237 -----------------------------~~i~-~~~~~eii~~~----------------------~~~i~~~i~~~l~ 264 (336)
T PRK13928 237 -----------------------------ITVT-SEEIREALKEP----------------------VSAIVQAVKSVLE 264 (336)
T ss_pred -----------------------------EEEC-HHHHHHHHHHH----------------------HHHHHHHHHHHHH
Confidence 0000 11111223221 1258889999999
Q ss_pred cCCChHHHHHhhh-CeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCccceEeceeeee
Q 009546 420 STGRIDLQRKLFC-SIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLG 488 (532)
Q Consensus 420 ~~~~~d~r~~L~~-NIvL~GG~S~i~Gf~eRL~~EL~~~~p~~~~~~~V~v~~~~~~~~~~aW~GgSIla 488 (532)
++ +.+++..+++ +|+|+||+|++||+.++|++++.. +|.+. .+|..++=+|+++++
T Consensus 265 ~~-~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~~---------~v~~~---~~P~~ava~Gaa~~~ 321 (336)
T PRK13928 265 RT-PPELSADIIDRGIIMTGGGALLHGLDKLLAEETKV---------PVYIA---EDPISCVALGTGKML 321 (336)
T ss_pred hC-CccccHhhcCCCEEEECcccchhhHHHHHHHHHCC---------Cceec---CCHHHHHHHHHHHHH
Confidence 98 7889889998 799999999999999999999852 23333 356788888988775
No 22
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.86 E-value=7.1e-21 Score=194.61 Aligned_cols=271 Identities=19% Similarity=0.285 Sum_probs=179.9
Q ss_pred CcceEEccccccCCCC--CCceEecceeCCeeeecCCCCcccCHHHHHHHHHHHhhhhcCCCCCCCCccceEEec-CCCC
Q 009546 109 FREFICGEEALRVSPT--EPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVL-PESF 185 (532)
Q Consensus 109 ~~~~~vG~ea~~~~~~--~~~~l~~Pi~~G~i~~~~~~~~q~dwd~le~iw~~i~~~~L~i~~~e~~~~~~Vlv~-e~~~ 185 (532)
.+-+.+|++|..+..+ +.+.+.+|+++|.|. |++..+.+++|++.+.++-..-.++ .++++ |.-.
T Consensus 37 ~~i~avG~~A~~m~gktp~~i~~~~Pl~~GvI~---------D~~~~~~~l~~~l~k~~~~~~~~~p---~vvi~vP~~~ 104 (326)
T PF06723_consen 37 GKILAVGDEAKAMLGKTPDNIEVVRPLKDGVIA---------DYEAAEEMLRYFLKKALGRRSFFRP---RVVICVPSGI 104 (326)
T ss_dssp --EEEESHHHHTTTTS-GTTEEEE-SEETTEES---------SHHHHHHHHHHHHHHHHTSS-SS-----EEEEEE-SS-
T ss_pred CeEEEEhHHHHHHhhcCCCccEEEccccCCccc---------CHHHHHHHHHHHHHHhccCCCCCCC---eEEEEeCCCC
Confidence 4567899999887543 689999999999998 9999999999999766553222232 35554 4445
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeehhhHhhhhcCCc-----eEEEEeeCCCcEEEEEeeCCeeccCCcEEecchHHHHH
Q 009546 186 DNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS-----TACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDIS 260 (532)
Q Consensus 186 ~~~~~rkl~eilFE~~~~psv~~~~~avlalya~G~~-----tglVVDiG~~~T~VvpV~dG~vl~~s~~~~~~GG~~lt 260 (532)
+..+.|.+.+. +...|+..|+++.++++|++|+|.. ..+|||||+++|.|+-+.-|-++. .+.+++||++++
T Consensus 105 T~verrA~~~a-~~~aGa~~V~li~ep~AaAiGaGl~i~~~~g~miVDIG~GtTdiavislggiv~--s~si~~gG~~~D 181 (326)
T PF06723_consen 105 TEVERRALIDA-ARQAGARKVYLIEEPIAAAIGAGLDIFEPRGSMIVDIGGGTTDIAVISLGGIVA--SRSIRIGGDDID 181 (326)
T ss_dssp -HHHHHHHHHH-HHHTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE-SS-EEEEEEETTEEEE--EEEES-SHHHHH
T ss_pred CHHHHHHHHHH-HHHcCCCEEEEecchHHHHhcCCCCCCCCCceEEEEECCCeEEEEEEECCCEEE--EEEEEecCcchh
Confidence 65554445554 4679999999999999999999963 469999999999999998888774 467899999999
Q ss_pred HHHHHHHHhcCCCCCcccccccccchHHHHHHHHHHceeccCCccchhhh--hccccCCCCCCCceeeeeeccCCCCCCC
Q 009546 261 RCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAV--VHSYEDGMPPGSHKTRLIALNVPPMGLF 338 (532)
Q Consensus 261 ~~L~~lL~~~~~~p~~~~~~l~~~~d~~~~~~iKe~~c~v~~~e~~~~~~--~~~y~~~~p~~~~k~~~~~~~~~P~~lf 338 (532)
+.+.+.++++. ++ .+....+++||++++++...+-+.... -.+...++|.. ..+..
T Consensus 182 eaI~~~ir~~y--------~l--~Ig~~tAE~iK~~~g~~~~~~~~~~~~v~Grd~~tGlP~~---~~i~~--------- 239 (326)
T PF06723_consen 182 EAIIRYIREKY--------NL--LIGERTAEKIKIEIGSASPPEEEESMEVRGRDLITGLPKS---IEITS--------- 239 (326)
T ss_dssp HHHHHHHHHHH--------SE--E--HHHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEE---EEEEH---------
T ss_pred HHHHHHHHHhh--------Cc--ccCHHHHHHHHHhcceeeccCCCceEEEECccccCCCcEE---EEEcH---------
Confidence 99999988763 22 467789999999999876431110000 01111222211 00000
Q ss_pred CCcccCCCCCCCCCCCCCCCccccccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHHHH
Q 009546 339 YPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSI 418 (532)
Q Consensus 339 ~p~~~~~e~~~~p~~~~~~d~ed~l~d~~~~~~~eR~~~~E~LFp~~~g~~~~~~~~~~~~~~~~~~~~~gL~e~I~~sI 418 (532)
+ .+.+.+- .....|.++|.+.+
T Consensus 240 -------~-----------------------------ev~~ai~----------------------~~~~~I~~~i~~~L 261 (326)
T PF06723_consen 240 -------S-----------------------------EVREAIE----------------------PPVDQIVEAIKEVL 261 (326)
T ss_dssp -------H-----------------------------HHHHHHH----------------------HHHHHHHHHHHHHH
T ss_pred -------H-----------------------------HHHHHHH----------------------HHHHHHHHHHHHHH
Confidence 0 0000010 01236899999999
Q ss_pred hcCCChHHHHHhhhC-eEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCccceEeceeee
Q 009546 419 LSTGRIDLQRKLFCS-IQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVL 487 (532)
Q Consensus 419 ~~~~~~d~r~~L~~N-IvL~GG~S~i~Gf~eRL~~EL~~~~p~~~~~~~V~v~~~~~~~~~~aW~GgSIl 487 (532)
.++ |+++..+++.| |+||||+|+++||+++|++++. + +|++.. +|.+++=.|+..+
T Consensus 262 e~~-pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~~--------~-pV~va~---~P~~~va~G~~~~ 318 (326)
T PF06723_consen 262 EKT-PPELAADILENGIVLTGGGALLRGLDEYISEETG--------V-PVRVAD---DPLTAVARGAGKL 318 (326)
T ss_dssp HTS--HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHS--------S--EEE-S---STTTHHHHHHHHT
T ss_pred HhC-CHHHHHHHHHCCEEEEChhhhhccHHHHHHHHHC--------C-CEEEcC---CHHHHHHHHHHHH
Confidence 999 99999998876 9999999999999999999995 2 467763 6678887775443
No 23
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.63 E-value=3.6e-15 Score=148.25 Aligned_cols=276 Identities=21% Similarity=0.232 Sum_probs=183.4
Q ss_pred cCcceEEccccccCCCC--CCceEecceeCCeeeecCCCCcccCHHHHHHHHHHHhhhhcCCCC-CCCCccceEEecCCC
Q 009546 108 KFREFICGEEALRVSPT--EPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPR-SERNLYSAILVLPES 184 (532)
Q Consensus 108 ~~~~~~vG~ea~~~~~~--~~~~l~~Pi~~G~i~~~~~~~~q~dwd~le~iw~~i~~~~L~i~~-~e~~~~~~Vlv~e~~ 184 (532)
...-+.||+||..+-.+ ++....+|+++|+|- |++..+.+++|..++..+-.. ...| .++++-|.
T Consensus 43 ~~~v~aVG~eAK~MlGrTP~ni~aiRPmkdGVIA---------d~~~te~ml~~fik~~~~~~~~~~~p---rI~i~vP~ 110 (342)
T COG1077 43 TKVVLAVGEEAKQMLGRTPGNIVAIRPMKDGVIA---------DFEVTELMLKYFIKKVHKNGSSFPKP---RIVICVPS 110 (342)
T ss_pred CceEEEehHHHHHHhccCCCCceEEeecCCcEee---------cHHHHHHHHHHHHHHhccCCCCCCCC---cEEEEecC
Confidence 34568999999876533 678899999999998 999999999998854332121 1111 24444333
Q ss_pred -CChHHHHHHHHHHHHhcCCCEEEEeehhhHhhhhcCC----ce-EEEEeeCCCcEEEEEeeCCeeccCCcEEecchHHH
Q 009546 185 -FDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL----ST-ACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGED 258 (532)
Q Consensus 185 -~~~~~~rkl~eilFE~~~~psv~~~~~avlalya~G~----~t-glVVDiG~~~T~VvpV~dG~vl~~s~~~~~~GG~~ 258 (532)
.+..+. +..+-..++-|...|+++.++.+|++|+|. ++ ++|||||.++|.|.-+..|-++. .....+||+.
T Consensus 111 g~T~VEr-rAi~ea~~~aGa~~V~lieEp~aAAIGaglpi~ep~G~mvvDIGgGTTevaVISlggiv~--~~Sirv~GD~ 187 (342)
T COG1077 111 GITDVER-RAIKEAAESAGAREVYLIEEPMAAAIGAGLPIMEPTGSMVVDIGGGTTEVAVISLGGIVS--SSSVRVGGDK 187 (342)
T ss_pred CccHHHH-HHHHHHHHhccCceEEEeccHHHHHhcCCCcccCCCCCEEEEeCCCceeEEEEEecCEEE--EeeEEEecch
Confidence 344443 344445667899999999999999999996 35 79999999999999887554442 2356899999
Q ss_pred HHHHHHHHHHhcCCCCCcccccccccchHHHHHHHHHHceeccCCccchhhhhccccCCCCCCCceeeeeeccCCCCCCC
Q 009546 259 ISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLF 338 (532)
Q Consensus 259 lt~~L~~lL~~~~~~p~~~~~~l~~~~d~~~~~~iKe~~c~v~~~e~~~~~~~~~y~~~~p~~~~k~~~~~~~~~P~~lf 338 (532)
+++.+...++.+. ++ .+-...+++||....++...+.+.. .....+..+. .+ |
T Consensus 188 ~De~Ii~yvr~~~--------nl--~IGe~taE~iK~eiG~a~~~~~~~~------------~~~eV~Grdl--~~-G-- 240 (342)
T COG1077 188 MDEAIIVYVRKKY--------NL--LIGERTAEKIKIEIGSAYPEEEDEE------------LEMEVRGRDL--VT-G-- 240 (342)
T ss_pred hhHHHHHHHHHHh--------Ce--eecHHHHHHHHHHhcccccccCCcc------------ceeeEEeeec--cc-C--
Confidence 9999999988763 22 3455779999999988765321100 0000111100 00 0
Q ss_pred CCcccCCCCCCCCCCCCCCCccccccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHHHH
Q 009546 339 YPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSI 418 (532)
Q Consensus 339 ~p~~~~~e~~~~p~~~~~~d~ed~l~d~~~~~~~eR~~~~E~LFp~~~g~~~~~~~~~~~~~~~~~~~~~gL~e~I~~sI 418 (532)
.|.... +. ...+.|.|- ....+|.++|...+
T Consensus 241 lPk~i~------------------------i~---s~ev~eal~----------------------~~v~~Iveair~~L 271 (342)
T COG1077 241 LPKTIT------------------------IN---SEEIAEALE----------------------EPLNGIVEAIRLVL 271 (342)
T ss_pred CCeeEE------------------------Ec---HHHHHHHHH----------------------HHHHHHHHHHHHHH
Confidence 011000 00 000011110 11236899999999
Q ss_pred hcCCChHHHHHhhhC-eEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCccceEeceeee
Q 009546 419 LSTGRIDLQRKLFCS-IQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVL 487 (532)
Q Consensus 419 ~~~~~~d~r~~L~~N-IvL~GG~S~i~Gf~eRL~~EL~~~~p~~~~~~~V~v~~~~~~~~~~aW~GgSIl 487 (532)
.+| |+++-...+.+ |+|+||+|++.||++.|.+|..- .|.+.+ +|..++=+|+...
T Consensus 272 e~t-pPeL~~DI~ergivltGGGalLrglD~~i~~et~~---------pv~ia~---~pL~~Va~G~G~~ 328 (342)
T COG1077 272 EKT-PPELAADIVERGIVLTGGGALLRGLDRLLSEETGV---------PVIIAD---DPLTCVAKGTGKA 328 (342)
T ss_pred hhC-CchhcccHhhCceEEecchHHhcCchHhHHhccCC---------eEEECC---ChHHHHHhccchh
Confidence 999 89999999999 99999999999999999988641 345543 5556666675443
No 24
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.44 E-value=4.8e-12 Score=125.18 Aligned_cols=135 Identities=18% Similarity=0.169 Sum_probs=102.8
Q ss_pred ecceeCCeeeecCCCCcccCHHHHHHHHHHHhh---hhcCCCCCCCCccceEEecCCCCChHHHHHHHHHHHHhcCCCEE
Q 009546 130 HRPIRRGHLNISQHYPMQQVLEDLYAIWDWILT---EKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASA 206 (532)
Q Consensus 130 ~~Pi~~G~i~~~~~~~~q~dwd~le~iw~~i~~---~~L~i~~~e~~~~~~Vlv~e~~~~~~~~rkl~eilFE~~~~psv 206 (532)
..|+.+|.|. |++..+.+++++.. ..++... .. .|+-+|..++..+. +...-+++..|+.-+
T Consensus 28 ~~~~~~g~I~---------d~~~~~~~l~~l~~~a~~~~g~~~-~~----vvisVP~~~~~~~r-~a~~~a~~~aGl~~~ 92 (239)
T TIGR02529 28 ADVVRDGIVV---------DFLGAVEIVRRLKDTLEQKLGIEL-TH----AATAIPPGTIEGDP-KVIVNVIESAGIEVL 92 (239)
T ss_pred cccccCCeEE---------EhHHHHHHHHHHHHHHHHHhCCCc-Cc----EEEEECCCCCcccH-HHHHHHHHHcCCceE
Confidence 3689999999 99999999999984 2344321 12 34445556665543 444456778899999
Q ss_pred EEeehhhHhhhhcCCceEEEEeeCCCcEEEEEeeCCeeccCCcEEecchHHHHHHHHHHHHHhcCCCCCcccccccccch
Q 009546 207 VVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMD 286 (532)
Q Consensus 207 ~~~~~avlalya~G~~tglVVDiG~~~T~VvpV~dG~vl~~s~~~~~~GG~~lt~~L~~lL~~~~~~p~~~~~~l~~~~d 286 (532)
.+..++++++.+++....+|||+|+++|.++-+.+|.++. ....++||+++|+.+.+.+. .+
T Consensus 93 ~li~ep~Aaa~~~~~~~~~vvDiGggtt~i~i~~~G~i~~--~~~~~~GG~~it~~Ia~~~~----------------i~ 154 (239)
T TIGR02529 93 HVLDEPTAAAAVLQIKNGAVVDVGGGTTGISILKKGKVIY--SADEPTGGTHMSLVLAGAYG----------------IS 154 (239)
T ss_pred EEeehHHHHHHHhcCCCcEEEEeCCCcEEEEEEECCeEEE--EEeeecchHHHHHHHHHHhC----------------CC
Confidence 9999999999998887789999999999998888998775 45678999999998765432 34
Q ss_pred HHHHHHHHHHc
Q 009546 287 LLMLNRIKESY 297 (532)
Q Consensus 287 ~~~~~~iKe~~ 297 (532)
.+.++++|...
T Consensus 155 ~~~AE~~K~~~ 165 (239)
T TIGR02529 155 FEEAEEYKRGH 165 (239)
T ss_pred HHHHHHHHHhc
Confidence 56788888654
No 25
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.21 E-value=3.3e-10 Score=113.96 Aligned_cols=137 Identities=18% Similarity=0.184 Sum_probs=100.8
Q ss_pred ceEecceeCCeeeecCCCCcccCHHHHHHHHHHHhh---hhcCCCCCCCCccceEEe-cCCCCChHHHHHHHHHHHHhcC
Q 009546 127 YCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILT---EKLHIPRSERNLYSAILV-LPESFDNREIKEMLSIVLRDLR 202 (532)
Q Consensus 127 ~~l~~Pi~~G~i~~~~~~~~q~dwd~le~iw~~i~~---~~L~i~~~e~~~~~~Vlv-~e~~~~~~~~rkl~eilFE~~~ 202 (532)
...+.++++|.+. |++.....++++.. +.++++.. .|++ +|+.++... ++.+.-+.+..|
T Consensus 52 ~~~~~~vr~G~i~---------di~~a~~~i~~~~~~ae~~~g~~i~------~v~~~vp~~~~~~~-~~~~~~~~~~aG 115 (267)
T PRK15080 52 LEWADVVRDGIVV---------DFIGAVTIVRRLKATLEEKLGRELT------HAATAIPPGTSEGD-PRAIINVVESAG 115 (267)
T ss_pred eccccccCCCEEe---------eHHHHHHHHHHHHHHHHHHhCCCcC------eEEEEeCCCCCchh-HHHHHHHHHHcC
Confidence 3345789999998 89998888888874 23454321 2444 444554433 232336778899
Q ss_pred CCEEEEeehhhHhhhhcCCceEEEEeeCCCcEEEEEeeCCeeccCCcEEecchHHHHHHHHHHHHHhcCCCCCccccccc
Q 009546 203 FASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILT 282 (532)
Q Consensus 203 ~psv~~~~~avlalya~G~~tglVVDiG~~~T~VvpV~dG~vl~~s~~~~~~GG~~lt~~L~~lL~~~~~~p~~~~~~l~ 282 (532)
+.-..++.++.+++.+.+...++|||+|+++|.++-+.+|.++.. ...++||+++|+.+.+.+.
T Consensus 116 l~~~~ii~e~~A~a~~~~~~~~~vvDIGggtt~i~v~~~g~~~~~--~~~~~GG~~it~~Ia~~l~-------------- 179 (267)
T PRK15080 116 LEVTHVLDEPTAAAAVLGIDNGAVVDIGGGTTGISILKDGKVVYS--ADEPTGGTHMSLVLAGAYG-------------- 179 (267)
T ss_pred CceEEEechHHHHHHHhCCCCcEEEEeCCCcEEEEEEECCeEEEE--ecccCchHHHHHHHHHHhC--------------
Confidence 998989999999999888777899999999999988889987753 4679999999999876542
Q ss_pred ccchHHHHHHHHHHc
Q 009546 283 KAMDLLMLNRIKESY 297 (532)
Q Consensus 283 ~~~d~~~~~~iKe~~ 297 (532)
.+.+.++++|...
T Consensus 180 --i~~~eAE~lK~~~ 192 (267)
T PRK15080 180 --ISFEEAEQYKRDP 192 (267)
T ss_pred --CCHHHHHHHHhcc
Confidence 2346678888543
No 26
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=98.73 E-value=6.8e-08 Score=103.46 Aligned_cols=92 Identities=15% Similarity=0.224 Sum_probs=74.0
Q ss_pred HHHHHHHHHHhcCCCEEEEeehhhHhhhhcCCc-----eEEEEeeCCCcEEEEEeeCCeeccCCcEEecchHHHHHHHHH
Q 009546 190 IKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS-----TACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLL 264 (532)
Q Consensus 190 ~rkl~eilFE~~~~psv~~~~~avlalya~G~~-----tglVVDiG~~~T~VvpV~dG~vl~~s~~~~~~GG~~lt~~L~ 264 (532)
++.+.+ +++..|+.-..++.++++++++.... ..+|||+|+++|+++-+.+|.+. ....+++||+++|+.|.
T Consensus 168 ~~~~~~-a~~~aGl~v~~iv~ep~Aaa~a~l~~~e~~~gv~vvDiGggtTdisv~~~G~l~--~~~~i~~GG~~it~dIa 244 (420)
T PRK09472 168 AKNIVK-AVERCGLKVDQLIFAGLASSYAVLTEDERELGVCVVDIGGGTMDIAVYTGGALR--HTKVIPYAGNVVTSDIA 244 (420)
T ss_pred HHHHHH-HHHHcCCeEeeEEehhhHHHHHhcChhhhhcCeEEEEeCCCceEEEEEECCEEE--EEeeeechHHHHHHHHH
Confidence 344655 67899999999999999999987642 47999999999999999999877 34679999999999987
Q ss_pred HHHHhcCCCCCcccccccccchHHHHHHHHHHceec
Q 009546 265 WTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEI 300 (532)
Q Consensus 265 ~lL~~~~~~p~~~~~~l~~~~d~~~~~~iKe~~c~v 300 (532)
..|. .+.+.++++|.++...
T Consensus 245 ~~l~----------------i~~~~AE~lK~~~g~~ 264 (420)
T PRK09472 245 YAFG----------------TPPSDAEAIKVRHGCA 264 (420)
T ss_pred HHhC----------------cCHHHHHHHHHhccee
Confidence 5442 2346799999877643
No 27
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=98.70 E-value=2.9e-07 Score=97.11 Aligned_cols=88 Identities=20% Similarity=0.289 Sum_probs=72.2
Q ss_pred HHHHhcCCCEEEEeehhhHhhhhcCC-----ceEEEEeeCCCcEEEEEeeCCeeccCCcEEecchHHHHHHHHHHHHHhc
Q 009546 196 IVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHH 270 (532)
Q Consensus 196 ilFE~~~~psv~~~~~avlalya~G~-----~tglVVDiG~~~T~VvpV~dG~vl~~s~~~~~~GG~~lt~~L~~lL~~~ 270 (532)
-+++..|+.-+.+..+++++++++.. ...+|||+|+++|+++.+.+|.+.. ...+++||+++|+.+.+.+.
T Consensus 165 ~~~~~aGl~~~~i~~~~~A~a~a~~~~~~~~~~~~vvDiG~gtt~i~i~~~g~~~~--~~~i~~GG~~it~~i~~~l~-- 240 (371)
T TIGR01174 165 KCVERCGLEVDNIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTDIAVYTGGSIRY--TKVIPIGGNHITKDIAKALR-- 240 (371)
T ss_pred HHHHHcCCCeeeEEEhhhhhhhhhcCcchhcCCEEEEEeCCCcEEEEEEECCEEEE--EeeecchHHHHHHHHHHHhC--
Confidence 36788999999999999999988753 2469999999999999999998764 46789999999998875442
Q ss_pred CCCCCcccccccccchHHHHHHHHHHceecc
Q 009546 271 QTWPQIRTDILTKAMDLLMLNRIKESYCEIK 301 (532)
Q Consensus 271 ~~~p~~~~~~l~~~~d~~~~~~iKe~~c~v~ 301 (532)
...+.++++|.+++...
T Consensus 241 --------------~~~~~AE~lK~~~~~~~ 257 (371)
T TIGR01174 241 --------------TPLEEAERIKIKYGCAS 257 (371)
T ss_pred --------------CCHHHHHHHHHHeeEec
Confidence 23577999999998754
No 28
>CHL00094 dnaK heat shock protein 70
Probab=98.68 E-value=3.9e-07 Score=102.41 Aligned_cols=91 Identities=21% Similarity=0.282 Sum_probs=67.0
Q ss_pred eEEecCCCCChHHHHHHHHHHHHhcCCCEEEEeehhhHhhhhcCC-----ceEEEEeeCCCcEEEEEeeCC--ee-ccCC
Q 009546 177 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVEDG--VA-LPNT 248 (532)
Q Consensus 177 ~Vlv~e~~~~~~~~rkl~eilFE~~~~psv~~~~~avlalya~G~-----~tglVVDiG~~~T~VvpV~dG--~v-l~~s 248 (532)
.|+-+|..|+..+ |+.+.-..+..|+.-+.++.++.+|++++|. ...+|+|+|++++.|+-+.-| .. +..+
T Consensus 138 ~VItVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~ 216 (621)
T CHL00094 138 AVITVPAYFNDSQ-RQATKDAGKIAGLEVLRIINEPTAASLAYGLDKKNNETILVFDLGGGTFDVSILEVGDGVFEVLST 216 (621)
T ss_pred EEEEECCCCCHHH-HHHHHHHHHHcCCceEEEeccHHHHHHHhccccCCCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEE
Confidence 4555666776554 4555556678899999999999999999875 357999999999999887533 21 1112
Q ss_pred cEEecchHHHHHHHHHHHHH
Q 009546 249 EKTLPFGGEDISRCLLWTQR 268 (532)
Q Consensus 249 ~~~~~~GG~~lt~~L~~lL~ 268 (532)
....++||+++++.|.+.+.
T Consensus 217 ~gd~~lGG~d~D~~l~~~~~ 236 (621)
T CHL00094 217 SGDTHLGGDDFDKKIVNWLI 236 (621)
T ss_pred ecCCCcChHHHHHHHHHHHH
Confidence 23468999999999887554
No 29
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=98.59 E-value=5.9e-07 Score=101.13 Aligned_cols=91 Identities=21% Similarity=0.310 Sum_probs=66.8
Q ss_pred eEEecCCCCChHHHHHHHHHHHHhcCCCEEEEeehhhHhhhhcCC-----ceEEEEeeCCCcEEEEEee--CCee-ccCC
Q 009546 177 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVE--DGVA-LPNT 248 (532)
Q Consensus 177 ~Vlv~e~~~~~~~~rkl~eilFE~~~~psv~~~~~avlalya~G~-----~tglVVDiG~~~T~VvpV~--dG~v-l~~s 248 (532)
.|+-+|..|+..+ |+.+.-..+..|+.-+.++.++.+|++++|. .+.+|+|+|++++.|+-+. +|.. +..+
T Consensus 136 ~VItVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~ 214 (627)
T PRK00290 136 AVITVPAYFNDAQ-RQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKGDEKILVYDLGGGTFDVSILEIGDGVFEVLST 214 (627)
T ss_pred EEEEECCCCCHHH-HHHHHHHHHHcCCceEEEecchHHHHHHhhhccCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEe
Confidence 4555666777654 4555567788899999999999999998874 4689999999999987764 2322 1122
Q ss_pred cEEecchHHHHHHHHHHHHH
Q 009546 249 EKTLPFGGEDISRCLLWTQR 268 (532)
Q Consensus 249 ~~~~~~GG~~lt~~L~~lL~ 268 (532)
....++||+++++.|.+.+.
T Consensus 215 ~gd~~lGG~d~D~~l~~~~~ 234 (627)
T PRK00290 215 NGDTHLGGDDFDQRIIDYLA 234 (627)
T ss_pred cCCCCcChHHHHHHHHHHHH
Confidence 23458999999999887654
No 30
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=98.58 E-value=1.4e-06 Score=98.38 Aligned_cols=92 Identities=21% Similarity=0.292 Sum_probs=69.2
Q ss_pred eEEecCCCCChHHHHHHHHHHHHhcCCCEEEEeehhhHhhhhcCCc-----eEEEEeeCCCcEEEEEee--CCeec-cCC
Q 009546 177 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS-----TACVVNMGAQVTSVICVE--DGVAL-PNT 248 (532)
Q Consensus 177 ~Vlv~e~~~~~~~~rkl~eilFE~~~~psv~~~~~avlalya~G~~-----tglVVDiG~~~T~VvpV~--dG~vl-~~s 248 (532)
.|+-+|..|+..+ |+.+.-..+..|+.-+.++.++.+|++++|.. .-+|+|+|++++.|+-+. +|..- ..+
T Consensus 177 ~VITVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~g~~~v~a~ 255 (663)
T PTZ00400 177 AVITVPAYFNDSQ-RQATKDAGKIAGLDVLRIINEPTAAALAFGMDKNDGKTIAVYDLGGGTFDISILEILGGVFEVKAT 255 (663)
T ss_pred EEEEECCCCCHHH-HHHHHHHHHHcCCceEEEeCchHHHHHHhccccCCCcEEEEEeCCCCeEEEEEEEecCCeeEEEec
Confidence 4555666677655 45556677888999999999999999999853 679999999999998764 55432 122
Q ss_pred cEEecchHHHHHHHHHHHHHh
Q 009546 249 EKTLPFGGEDISRCLLWTQRH 269 (532)
Q Consensus 249 ~~~~~~GG~~lt~~L~~lL~~ 269 (532)
.....+||+++++.|.+.+..
T Consensus 256 ~gd~~LGG~d~D~~l~~~l~~ 276 (663)
T PTZ00400 256 NGNTSLGGEDFDQRILNYLIA 276 (663)
T ss_pred ccCCCcCHHHHHHHHHHHHHH
Confidence 334689999999999876543
No 31
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=98.58 E-value=4.6e-07 Score=101.29 Aligned_cols=93 Identities=22% Similarity=0.267 Sum_probs=68.6
Q ss_pred eEEecCCCCChHHHHHHHHHHHHhcCCCEEEEeehhhHhhhhcCC-----ceEEEEeeCCCcEEEEEee--CCeec-cCC
Q 009546 177 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVE--DGVAL-PNT 248 (532)
Q Consensus 177 ~Vlv~e~~~~~~~~rkl~eilFE~~~~psv~~~~~avlalya~G~-----~tglVVDiG~~~T~VvpV~--dG~vl-~~s 248 (532)
.|+-+|..|+..+ |+.+.-..+..|+.-+.++.++.+|++++|. .+-+|+|+|++++.|+.+. +|..- ..+
T Consensus 132 ~VItVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~ 210 (599)
T TIGR01991 132 AVITVPAYFDDAQ-RQATKDAARLAGLNVLRLLNEPTAAAVAYGLDKASEGIYAVYDLGGGTFDVSILKLTKGVFEVLAT 210 (599)
T ss_pred EEEEECCCCCHHH-HHHHHHHHHHcCCCceEEecCHHHHHHHHhhccCCCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEE
Confidence 4555666677655 4556667888999999999999999988874 3579999999999988764 44321 112
Q ss_pred cEEecchHHHHHHHHHHHHHhc
Q 009546 249 EKTLPFGGEDISRCLLWTQRHH 270 (532)
Q Consensus 249 ~~~~~~GG~~lt~~L~~lL~~~ 270 (532)
.....+||+++++.|.+.+..+
T Consensus 211 ~gd~~lGG~d~D~~l~~~l~~~ 232 (599)
T TIGR01991 211 GGDSALGGDDFDHALAKWILKQ 232 (599)
T ss_pred cCCCCCCHHHHHHHHHHHHHHh
Confidence 2235899999999998877543
No 32
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=98.57 E-value=6.3e-07 Score=100.87 Aligned_cols=91 Identities=22% Similarity=0.241 Sum_probs=68.6
Q ss_pred eEEecCCCCChHHHHHHHHHHHHhcCCCEEEEeehhhHhhhhcCC-----ceEEEEeeCCCcEEEEEee--CCeec-cCC
Q 009546 177 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVE--DGVAL-PNT 248 (532)
Q Consensus 177 ~Vlv~e~~~~~~~~rkl~eilFE~~~~psv~~~~~avlalya~G~-----~tglVVDiG~~~T~VvpV~--dG~vl-~~s 248 (532)
.|+-+|..|+..+ |+.+.-..+..|+.-+.++.++.+|++++|. ..-+|+|+|++++.|+-+. +|..- ..+
T Consensus 163 aVITVPayF~~~q-R~at~~Aa~~AGl~v~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSil~~~~g~~~V~at 241 (657)
T PTZ00186 163 AVVTCPAYFNDAQ-RQATKDAGTIAGLNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLEIAGGVFEVKAT 241 (657)
T ss_pred EEEEECCCCChHH-HHHHHHHHHHcCCCeEEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEEEEEeCCEEEEEEe
Confidence 4555666666654 5566667788999999999999999998875 3579999999999998775 66432 222
Q ss_pred cEEecchHHHHHHHHHHHHH
Q 009546 249 EKTLPFGGEDISRCLLWTQR 268 (532)
Q Consensus 249 ~~~~~~GG~~lt~~L~~lL~ 268 (532)
..-..+||+++++.|.+.+.
T Consensus 242 ~Gd~~LGG~DfD~~l~~~~~ 261 (657)
T PTZ00186 242 NGDTHLGGEDFDLALSDYIL 261 (657)
T ss_pred cCCCCCCchhHHHHHHHHHH
Confidence 23458999999998877554
No 33
>PLN03184 chloroplast Hsp70; Provisional
Probab=98.49 E-value=4.5e-06 Score=94.52 Aligned_cols=92 Identities=22% Similarity=0.306 Sum_probs=67.3
Q ss_pred eEEecCCCCChHHHHHHHHHHHHhcCCCEEEEeehhhHhhhhcCC-----ceEEEEeeCCCcEEEEEee--CCee-ccCC
Q 009546 177 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVE--DGVA-LPNT 248 (532)
Q Consensus 177 ~Vlv~e~~~~~~~~rkl~eilFE~~~~psv~~~~~avlalya~G~-----~tglVVDiG~~~T~VvpV~--dG~v-l~~s 248 (532)
.|+-+|..|+..+ |+.+.-..+..|+.-+.+++++.+|++++|. ..-+|+|+|++++.|+-+. +|.. +..+
T Consensus 175 ~VITVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~ 253 (673)
T PLN03184 175 AVITVPAYFNDSQ-RTATKDAGRIAGLEVLRIINEPTAASLAYGFEKKSNETILVFDLGGGTFDVSVLEVGDGVFEVLST 253 (673)
T ss_pred EEEEECCCCCHHH-HHHHHHHHHHCCCCeEEEeCcHHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEecCCEEEEEEe
Confidence 4555666677654 4555667788899999999999999998875 3579999999999987764 3331 1112
Q ss_pred cEEecchHHHHHHHHHHHHHh
Q 009546 249 EKTLPFGGEDISRCLLWTQRH 269 (532)
Q Consensus 249 ~~~~~~GG~~lt~~L~~lL~~ 269 (532)
....++||+++++.|.+.+..
T Consensus 254 ~gd~~LGG~dfD~~L~~~~~~ 274 (673)
T PLN03184 254 SGDTHLGGDDFDKRIVDWLAS 274 (673)
T ss_pred cCCCccCHHHHHHHHHHHHHH
Confidence 224689999999999876543
No 34
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=98.48 E-value=1.7e-06 Score=96.88 Aligned_cols=91 Identities=21% Similarity=0.305 Sum_probs=66.0
Q ss_pred eEEecCCCCChHHHHHHHHHHHHhcCCCEEEEeehhhHhhhhcCC------ceEEEEeeCCCcEEEEEee--CCee-ccC
Q 009546 177 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL------STACVVNMGAQVTSVICVE--DGVA-LPN 247 (532)
Q Consensus 177 ~Vlv~e~~~~~~~~rkl~eilFE~~~~psv~~~~~avlalya~G~------~tglVVDiG~~~T~VvpV~--dG~v-l~~ 247 (532)
.|+-+|..|+..+ |+.+.-..+..|+.-+.+++++.+|++++|. .+-+|+|+|++++.|+-+. +|.. +..
T Consensus 133 ~VItVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~ 211 (595)
T TIGR02350 133 AVITVPAYFNDAQ-RQATKDAGKIAGLEVLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILEIGDGVFEVLS 211 (595)
T ss_pred EEEEECCCCCHHH-HHHHHHHHHHcCCceEEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEEecCCeEEEEE
Confidence 4555666777655 4555556778899999999999999988764 3579999999999887763 3422 112
Q ss_pred CcEEecchHHHHHHHHHHHHH
Q 009546 248 TEKTLPFGGEDISRCLLWTQR 268 (532)
Q Consensus 248 s~~~~~~GG~~lt~~L~~lL~ 268 (532)
+.....+||+++++.|.+.+.
T Consensus 212 ~~gd~~lGG~d~D~~l~~~~~ 232 (595)
T TIGR02350 212 TAGDTHLGGDDFDQRIIDWLA 232 (595)
T ss_pred ecCCcccCchhHHHHHHHHHH
Confidence 222357999999999877654
No 35
>PRK13411 molecular chaperone DnaK; Provisional
Probab=98.45 E-value=2.4e-06 Score=96.53 Aligned_cols=92 Identities=21% Similarity=0.308 Sum_probs=66.4
Q ss_pred eEEecCCCCChHHHHHHHHHHHHhcCCCEEEEeehhhHhhhhcCCc------eEEEEeeCCCcEEEEEee--CCee-ccC
Q 009546 177 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS------TACVVNMGAQVTSVICVE--DGVA-LPN 247 (532)
Q Consensus 177 ~Vlv~e~~~~~~~~rkl~eilFE~~~~psv~~~~~avlalya~G~~------tglVVDiG~~~T~VvpV~--dG~v-l~~ 247 (532)
.|+-+|..|+..+ |+.+.-..+..|+.-+.+++++.+|++++|.. +-+|+|+|++++.|+-+. +|.. +..
T Consensus 136 ~VITVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~a 214 (653)
T PRK13411 136 AVITVPAYFTDAQ-RQATKDAGTIAGLEVLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSILQLGDGVFEVKA 214 (653)
T ss_pred EEEEECCCCCcHH-HHHHHHHHHHcCCCeEEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEEEEeCCEEEEEE
Confidence 4555666677655 45555577788999999999999999988752 479999999999987653 3322 112
Q ss_pred CcEEecchHHHHHHHHHHHHHh
Q 009546 248 TEKTLPFGGEDISRCLLWTQRH 269 (532)
Q Consensus 248 s~~~~~~GG~~lt~~L~~lL~~ 269 (532)
+..-..+||+++++.|.+.+..
T Consensus 215 t~gd~~LGG~dfD~~l~~~l~~ 236 (653)
T PRK13411 215 TAGNNHLGGDDFDNCIVDWLVE 236 (653)
T ss_pred EecCCCcCHHHHHHHHHHHHHH
Confidence 2223579999999998776543
No 36
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=98.44 E-value=2.5e-06 Score=95.68 Aligned_cols=93 Identities=20% Similarity=0.276 Sum_probs=68.3
Q ss_pred eEEecCCCCChHHHHHHHHHHHHhcCCCEEEEeehhhHhhhhcCC-----ceEEEEeeCCCcEEEEEee--CCee-ccCC
Q 009546 177 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVE--DGVA-LPNT 248 (532)
Q Consensus 177 ~Vlv~e~~~~~~~~rkl~eilFE~~~~psv~~~~~avlalya~G~-----~tglVVDiG~~~T~VvpV~--dG~v-l~~s 248 (532)
.|+-+|..|+..+ |+.+.-..+..|+.-+.+++++.+|++++|. ..-+|+|+|++++.|+.+. +|.. +..+
T Consensus 152 ~VITVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat 230 (616)
T PRK05183 152 AVITVPAYFDDAQ-RQATKDAARLAGLNVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILRLSKGVFEVLAT 230 (616)
T ss_pred EEEEECCCCCHHH-HHHHHHHHHHcCCCeEEEecchHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEeeCCEEEEEEe
Confidence 4555666677654 4566667888999999999999999988764 2479999999999987764 4432 1112
Q ss_pred cEEecchHHHHHHHHHHHHHhc
Q 009546 249 EKTLPFGGEDISRCLLWTQRHH 270 (532)
Q Consensus 249 ~~~~~~GG~~lt~~L~~lL~~~ 270 (532)
..-..+||+++++.|.+.+..+
T Consensus 231 ~gd~~lGG~d~D~~l~~~~~~~ 252 (616)
T PRK05183 231 GGDSALGGDDFDHLLADWILEQ 252 (616)
T ss_pred cCCCCcCHHHHHHHHHHHHHHH
Confidence 2235799999999998776543
No 37
>PRK13410 molecular chaperone DnaK; Provisional
Probab=98.40 E-value=3.3e-06 Score=95.35 Aligned_cols=91 Identities=22% Similarity=0.319 Sum_probs=66.8
Q ss_pred eEEecCCCCChHHHHHHHHHHHHhcCCCEEEEeehhhHhhhhcCC-----ceEEEEeeCCCcEEEEEee--CCee-ccCC
Q 009546 177 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVE--DGVA-LPNT 248 (532)
Q Consensus 177 ~Vlv~e~~~~~~~~rkl~eilFE~~~~psv~~~~~avlalya~G~-----~tglVVDiG~~~T~VvpV~--dG~v-l~~s 248 (532)
.|+-+|..|+..+ |+.+.-..+.-|+.-+.+++++.+|++++|. .+-+|+|+|++++.|+-+. +|.. +..+
T Consensus 138 ~VITVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at 216 (668)
T PRK13410 138 AVITVPAYFNDSQ-RQATRDAGRIAGLEVERILNEPTAAALAYGLDRSSSQTVLVFDLGGGTFDVSLLEVGNGVFEVKAT 216 (668)
T ss_pred EEEEECCCCCHHH-HHHHHHHHHHcCCCeEEEecchHHHHHHhccccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEEEe
Confidence 4555666677655 4555556688899999999999999999875 3579999999999987764 4432 1122
Q ss_pred cEEecchHHHHHHHHHHHHH
Q 009546 249 EKTLPFGGEDISRCLLWTQR 268 (532)
Q Consensus 249 ~~~~~~GG~~lt~~L~~lL~ 268 (532)
.....+||+++++.|.+.+.
T Consensus 217 ~gd~~lGG~dfD~~l~~~l~ 236 (668)
T PRK13410 217 SGDTQLGGNDFDKRIVDWLA 236 (668)
T ss_pred ecCCCCChhHHHHHHHHHHH
Confidence 23357999999998876554
No 38
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=98.38 E-value=7.3e-06 Score=91.43 Aligned_cols=93 Identities=19% Similarity=0.295 Sum_probs=68.7
Q ss_pred eEEecCCCCChHHHHHHHHHHHHhcCCCEEEEeehhhHhhhhcCCc-----eEEEEeeCCCcEEEEEee--CCeec-cCC
Q 009546 177 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS-----TACVVNMGAQVTSVICVE--DGVAL-PNT 248 (532)
Q Consensus 177 ~Vlv~e~~~~~~~~rkl~eilFE~~~~psv~~~~~avlalya~G~~-----tglVVDiG~~~T~VvpV~--dG~vl-~~s 248 (532)
.|+-+|..|+..+ |+.+.-..+..|+.-+.+++++.+|++++|.. +-+|+|+|++++.|+-+. +|..- ..+
T Consensus 144 aVITVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at 222 (595)
T PRK01433 144 AVITVPAHFNDAA-RGEVMLAAKIAGFEVLRLIAEPTAAAYAYGLNKNQKGCYLVYDLGGGTFDVSILNIQEGIFQVIAT 222 (595)
T ss_pred EEEEECCCCCHHH-HHHHHHHHHHcCCCEEEEecCcHHHHHHHhcccCCCCEEEEEECCCCcEEEEEEEEeCCeEEEEEE
Confidence 4555666677554 55666678889999999999999999998752 469999999999987763 55321 111
Q ss_pred cEEecchHHHHHHHHHHHHHhc
Q 009546 249 EKTLPFGGEDISRCLLWTQRHH 270 (532)
Q Consensus 249 ~~~~~~GG~~lt~~L~~lL~~~ 270 (532)
..-..+||+++++.|.+.+..+
T Consensus 223 ~gd~~lGG~d~D~~l~~~~~~~ 244 (595)
T PRK01433 223 NGDNMLGGNDIDVVITQYLCNK 244 (595)
T ss_pred cCCcccChHHHHHHHHHHHHHh
Confidence 2234799999999998876543
No 39
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=98.37 E-value=6.8e-06 Score=92.91 Aligned_cols=91 Identities=20% Similarity=0.259 Sum_probs=67.1
Q ss_pred eEEecCCCCChHHHHHHHHHHHHhcCCCEEEEeehhhHhhhhcCC-------ceEEEEeeCCCcEEEEEee--CCeec-c
Q 009546 177 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-------STACVVNMGAQVTSVICVE--DGVAL-P 246 (532)
Q Consensus 177 ~Vlv~e~~~~~~~~rkl~eilFE~~~~psv~~~~~avlalya~G~-------~tglVVDiG~~~T~VvpV~--dG~vl-~ 246 (532)
.|+-+|..|+..+ |+.+.-..+..|+.-+.+++++.+|++++|. .+-+|+|+|++++.|+-|. +|..- .
T Consensus 143 ~VItVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~ 221 (653)
T PTZ00009 143 AVVTVPAYFNDSQ-RQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIFEVK 221 (653)
T ss_pred eEEEeCCCCCHHH-HHHHHHHHHHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCCeEEEE
Confidence 3555666676554 5566667888999999999999999998864 3689999999999987664 45322 1
Q ss_pred CCcEEecchHHHHHHHHHHHHH
Q 009546 247 NTEKTLPFGGEDISRCLLWTQR 268 (532)
Q Consensus 247 ~s~~~~~~GG~~lt~~L~~lL~ 268 (532)
.+.-...+||+++++.|.+.+.
T Consensus 222 a~~gd~~lGG~d~D~~l~~~~~ 243 (653)
T PTZ00009 222 ATAGDTHLGGEDFDNRLVEFCV 243 (653)
T ss_pred EecCCCCCChHHHHHHHHHHHH
Confidence 1222358999999999877554
No 40
>PRK11678 putative chaperone; Provisional
Probab=98.35 E-value=1.5e-05 Score=85.92 Aligned_cols=86 Identities=20% Similarity=0.249 Sum_probs=62.0
Q ss_pred eEEecCCCCC-----hHHH--HHHHHHHHHhcCCCEEEEeehhhHhhhhcCC-----ceEEEEeeCCCcEEEEEee-CC-
Q 009546 177 AILVLPESFD-----NREI--KEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVE-DG- 242 (532)
Q Consensus 177 ~Vlv~e~~~~-----~~~~--rkl~eilFE~~~~psv~~~~~avlalya~G~-----~tglVVDiG~~~T~VvpV~-dG- 242 (532)
.|+-+|..|+ ..+. ++++.-..+..|++.+.+++++.+|++++|. ..-+|+|+|++++.++-|- ++
T Consensus 152 ~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~~~~~vlV~D~GGGT~D~Svv~~~~~ 231 (450)
T PRK11678 152 AVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLTEEKRVLVVDIGGGTTDCSMLLMGPS 231 (450)
T ss_pred EEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccCCCCeEEEEEeCCCeEEEEEEEecCc
Confidence 3444555665 3232 2345667788999999999999999999874 4689999999999887763 22
Q ss_pred ---------eeccCCcEEecchHHHHHHHHH
Q 009546 243 ---------VALPNTEKTLPFGGEDISRCLL 264 (532)
Q Consensus 243 ---------~vl~~s~~~~~~GG~~lt~~L~ 264 (532)
.++..+- ..+||+++++.|.
T Consensus 232 ~~~~~~r~~~vla~~G--~~lGG~DfD~~L~ 260 (450)
T PRK11678 232 WRGRADRSASLLGHSG--QRIGGNDLDIALA 260 (450)
T ss_pred ccccCCcceeEEecCC--CCCChHHHHHHHH
Confidence 1232222 3699999999985
No 41
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=98.22 E-value=7.3e-06 Score=86.81 Aligned_cols=91 Identities=16% Similarity=0.234 Sum_probs=74.2
Q ss_pred HHHHHHHHhcCCCEEEEeehhhHhhhhcCC-----ceEEEEeeCCCcEEEEEeeCCeeccCCcEEecchHHHHHHHHHHH
Q 009546 192 EMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWT 266 (532)
Q Consensus 192 kl~eilFE~~~~psv~~~~~avlalya~G~-----~tglVVDiG~~~T~VvpV~dG~vl~~s~~~~~~GG~~lt~~L~~l 266 (532)
+-+.-++|+.|..=..++-++++++.+.=. -.+|+||+|+++|+|+...+|.+... ..+|+||+++|.-+.+.
T Consensus 168 ~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~dEkelGv~lIDiG~GTTdIai~~~G~l~~~--~~ipvgG~~vT~DIa~~ 245 (418)
T COG0849 168 ENLEKCVERAGLKVDNIVLEPLASALAVLTEDEKELGVALIDIGGGTTDIAIYKNGALRYT--GVIPVGGDHVTKDIAKG 245 (418)
T ss_pred HHHHHHHHHhCCCeeeEEEehhhhhhhccCcccHhcCeEEEEeCCCcEEEEEEECCEEEEE--eeEeeCccHHHHHHHHH
Confidence 445557889999888888899988877642 36899999999999999999998854 46899999999999876
Q ss_pred HHhcCCCCCcccccccccchHHHHHHHHHHceec
Q 009546 267 QRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEI 300 (532)
Q Consensus 267 L~~~~~~p~~~~~~l~~~~d~~~~~~iKe~~c~v 300 (532)
|. .+.+.+|+||.++...
T Consensus 246 l~----------------t~~~~AE~iK~~~g~a 263 (418)
T COG0849 246 LK----------------TPFEEAERIKIKYGSA 263 (418)
T ss_pred hC----------------CCHHHHHHHHHHcCcc
Confidence 63 3457899999988644
No 42
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=2.2e-05 Score=87.29 Aligned_cols=151 Identities=23% Similarity=0.312 Sum_probs=96.5
Q ss_pred ceEEccccccCC----CCCCceEecceeCC------eeeec-CCCCccc-CHHHHHHHHHHHhhhhcCCCCCCCCccceE
Q 009546 111 EFICGEEALRVS----PTEPYCIHRPIRRG------HLNIS-QHYPMQQ-VLEDLYAIWDWILTEKLHIPRSERNLYSAI 178 (532)
Q Consensus 111 ~~~vG~ea~~~~----~~~~~~l~~Pi~~G------~i~~~-~~~~~q~-dwd~le~iw~~i~~~~L~i~~~e~~~~~~V 178 (532)
+.+||..|...- ..-.+.+.+.+-+| .+.+. ..|+.++ .-..+.++++++ ...|+-...+ .|
T Consensus 51 ~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~~~~~~~~~~~~~~~~eeisa~~L~~lk~~a-e~~lg~~v~~-----~V 124 (579)
T COG0443 51 EVLVGQAAKRQAVDNPENTIFSIKRKIGRGSNGLKISVEVDGKKYTPEEISAMILTKLKEDA-EAYLGEKVTD-----AV 124 (579)
T ss_pred CEEecHHHHHHhhhCCcceEEEEehhcCCCCCCCcceeeeCCeeeCHHHHHHHHHHHHHHHH-HHhhCCCcce-----EE
Confidence 689999887632 11233444444332 11122 2443332 222345555555 2445533322 34
Q ss_pred EecCCCCChHHHHHHHHHHHHhcCCCEEEEeehhhHhhhhcCC-----ceEEEEeeCCCcEEEEEee--CCe-eccCCcE
Q 009546 179 LVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVE--DGV-ALPNTEK 250 (532)
Q Consensus 179 lv~e~~~~~~~~rkl~eilFE~~~~psv~~~~~avlalya~G~-----~tglVVDiG~~~T~VvpV~--dG~-vl~~s~~ 250 (532)
+-+|..|+..+ |+.+.-.....|++-+.+++++.+|+|++|. .+-+|+|+|++++.|+-|. +|. -+..+..
T Consensus 125 ItVPayF~d~q-R~at~~A~~iaGl~vlrlinEPtAAAlayg~~~~~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~g 203 (579)
T COG0443 125 ITVPAYFNDAQ-RQATKDAARIAGLNVLRLINEPTAAALAYGLDKGKEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGG 203 (579)
T ss_pred EEeCCCCCHHH-HHHHHHHHHHcCCCeEEEecchHHHHHHhHhccCCCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCC
Confidence 44555566554 6788888999999999999999999999985 3689999999999998885 452 2233445
Q ss_pred EecchHHHHHHHHHHHHH
Q 009546 251 TLPFGGEDISRCLLWTQR 268 (532)
Q Consensus 251 ~~~~GG~~lt~~L~~lL~ 268 (532)
...+||++++..|...+.
T Consensus 204 d~~LGGddfD~~l~~~~~ 221 (579)
T COG0443 204 DNHLGGDDFDNALIDYLV 221 (579)
T ss_pred CcccCchhHHHHHHHHHH
Confidence 678999999998876543
No 43
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=98.00 E-value=9.5e-05 Score=77.14 Aligned_cols=89 Identities=19% Similarity=0.231 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhcCCCEEEEeehhhHhhhhc----------C-Cc-eEEEEeeCCCcEEEEEeeCCeeccCCcEEecchHH
Q 009546 190 IKEMLSIVLRDLRFASAVVHQEGLAAVFGN----------G-LS-TACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGE 257 (532)
Q Consensus 190 ~rkl~eilFE~~~~psv~~~~~avlalya~----------G-~~-tglVVDiG~~~T~VvpV~dG~vl~~s~~~~~~GG~ 257 (532)
++.+.+ +|+..|+.-..+-.++++..-+. . .. +.++||+|+.+|+++-+.+|.++. .+.+++||+
T Consensus 145 v~~~~~-~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~~~~--~r~i~~G~~ 221 (348)
T TIGR01175 145 VDSRLH-ALKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGRMLF--TREVPFGTR 221 (348)
T ss_pred HHHHHH-HHHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCeEEE--EEEeechHH
Confidence 334555 47888887777776666653222 1 12 489999999999999999998874 578999999
Q ss_pred HHHHHHHHHHHhcCCCCCcccccccccchHHHHHHHHHHc
Q 009546 258 DISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESY 297 (532)
Q Consensus 258 ~lt~~L~~lL~~~~~~p~~~~~~l~~~~d~~~~~~iKe~~ 297 (532)
++++.+.+.+. .+.+.++++|.+.
T Consensus 222 ~i~~~i~~~~~----------------~~~~~Ae~~k~~~ 245 (348)
T TIGR01175 222 QLTSELSRAYG----------------LNPEEAGEAKQQG 245 (348)
T ss_pred HHHHHHHHHcC----------------CCHHHHHHHHhcC
Confidence 99998875431 3456788888643
No 44
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=97.61 E-value=0.00046 Score=71.98 Aligned_cols=128 Identities=20% Similarity=0.319 Sum_probs=72.4
Q ss_pred CHHHHHHHHHHHhhhhcCCCCCCCCccceEEecCC---C--------CChHHHH-HHHHHHHHhcCCCEEEEeehh--hH
Q 009546 149 VLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPE---S--------FDNREIK-EMLSIVLRDLRFASAVVHQEG--LA 214 (532)
Q Consensus 149 dwd~le~iw~~i~~~~L~i~~~e~~~~~~Vlv~e~---~--------~~~~~~r-kl~eilFE~~~~psv~~~~~a--vl 214 (532)
.-+.++....+=..+.+.++.++.... -.++-+. . -.+++.- ..+ -+|+..|..-..+=.++ ++
T Consensus 86 ~~~el~~~I~~Ea~~~iP~~~~e~~~D-~~vl~~~~~~~~~~~Vll~Aa~k~~v~~~~-~~~~~aGL~~~~vDv~~~Al~ 163 (340)
T PF11104_consen 86 PEKELEEAIRWEAEQYIPFPLEEVVFD-YQVLGESEDGEEKMEVLLVAAPKEIVESYV-ELFEEAGLKPVAVDVEAFALA 163 (340)
T ss_dssp -HHHHHHHHHHHHGGG-SS----EEEE-EEESS-GS-TTSEEEEEEEEEEHHHHHHHH-HHHHHTT-EEEEEEEHHHHGG
T ss_pred CHHHHHHHHHHHHHhhCCCChhHeEEE-EEEeccCCCCCCceEEEEEEEcHHHHHHHH-HHHHHcCCceEEEeehHHHHH
Confidence 456788888887777777665553111 1111111 0 0234432 233 36888898765554443 33
Q ss_pred hhhhcC---------CceEEEEeeCCCcEEEEEeeCCeeccCCcEEecchHHHHHHHHHHHHHhcCCCCCcccccccccc
Q 009546 215 AVFGNG---------LSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAM 285 (532)
Q Consensus 215 alya~G---------~~tglVVDiG~~~T~VvpV~dG~vl~~s~~~~~~GG~~lt~~L~~lL~~~~~~p~~~~~~l~~~~ 285 (532)
-+|... ..+-++||||+..|+++-+.+|.++. .+.+++||+++++.+.+.+. .
T Consensus 164 r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~~g~~~f--~R~i~~G~~~l~~~i~~~~~----------------i 225 (340)
T PF11104_consen 164 RLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQNGKPIF--SRSIPIGGNDLTEAIARELG----------------I 225 (340)
T ss_dssp GGGHHHHHTST----T-EEEEEEE-SS-EEEEEEETTEEEE--EEEES-SHHHHHHHHHHHTT-----------------
T ss_pred HHHHHHHHhCCcccccceEEEEEecCCeEEEEEEECCEEEE--EEEEeeCHHHHHHHHHHhcC----------------C
Confidence 444431 12458999999999999999999884 46789999999999875532 3
Q ss_pred hHHHHHHHHHH
Q 009546 286 DLLMLNRIKES 296 (532)
Q Consensus 286 d~~~~~~iKe~ 296 (532)
+.+-++++|..
T Consensus 226 ~~~~Ae~~k~~ 236 (340)
T PF11104_consen 226 DFEEAEELKRS 236 (340)
T ss_dssp -HHHHHHHHHH
T ss_pred CHHHHHHHHhc
Confidence 44567777754
No 45
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=97.41 E-value=0.001 Score=69.44 Aligned_cols=69 Identities=12% Similarity=0.185 Sum_probs=58.2
Q ss_pred cCCCEEEEeehhhHhhhhcCC-------------ceEEEEeeCCCcEEEEEeeCCeeccCCcEEecchHHHHHHHHHHHH
Q 009546 201 LRFASAVVHQEGLAAVFGNGL-------------STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQ 267 (532)
Q Consensus 201 ~~~psv~~~~~avlalya~G~-------------~tglVVDiG~~~T~VvpV~dG~vl~~s~~~~~~GG~~lt~~L~~lL 267 (532)
..+..|.+++|++.|+|.... ...+|||||+.+|.++-+.+|.+.......++.|+.++-+.+.+.+
T Consensus 151 I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~~TtD~~v~~~~~~~~~~s~s~~~G~~~~~~~I~~~i 230 (344)
T PRK13917 151 INVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGSGTTDLDTIQNLKRVEEESFVIPKGTIDVYKRIASHI 230 (344)
T ss_pred EEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCCCcEEEEEEeCcEEcccccccccchHHHHHHHHHHHH
Confidence 466789999999999876532 2459999999999999999999988877789999999999998888
Q ss_pred Hh
Q 009546 268 RH 269 (532)
Q Consensus 268 ~~ 269 (532)
+.
T Consensus 231 ~~ 232 (344)
T PRK13917 231 SK 232 (344)
T ss_pred Hh
Confidence 53
No 46
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=97.03 E-value=0.0026 Score=71.36 Aligned_cols=92 Identities=23% Similarity=0.273 Sum_probs=65.9
Q ss_pred eEEecCCCCChHHHHHHHHHHHHhcCCCEEEEeehhhHhhhhcCC------ceEEEEeeCCCcEEEEEee--CCeecc-C
Q 009546 177 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL------STACVVNMGAQVTSVICVE--DGVALP-N 247 (532)
Q Consensus 177 ~Vlv~e~~~~~~~~rkl~eilFE~~~~psv~~~~~avlalya~G~------~tglVVDiG~~~T~VvpV~--dG~vl~-~ 247 (532)
.|+-+|..|+..+ |+.+.-..+..|+.-+.++.++.+|+++++. .+-+|+|+|++++.|+-|. +|..-- .
T Consensus 138 ~vitVPa~~~~~q-r~~~~~Aa~~agl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~ 216 (602)
T PF00012_consen 138 VVITVPAYFTDEQ-RQALRDAAELAGLNVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVEFSNGQFEVLA 216 (602)
T ss_dssp EEEEE-TT--HHH-HHHHHHHHHHTT-EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEEEETTEEEEEE
T ss_pred ceeeechhhhhhh-hhcccccccccccccceeecccccccccccccccccccceeccccccceEeeeehhcccccccccc
Confidence 3555666777665 4566777888999999999999999987763 3679999999999888774 564321 2
Q ss_pred CcEEecchHHHHHHHHHHHHHh
Q 009546 248 TEKTLPFGGEDISRCLLWTQRH 269 (532)
Q Consensus 248 s~~~~~~GG~~lt~~L~~lL~~ 269 (532)
+.....+||+++++.|.+.+..
T Consensus 217 ~~~~~~lGG~~~D~~l~~~~~~ 238 (602)
T PF00012_consen 217 TAGDNNLGGRDFDEALAEYLLE 238 (602)
T ss_dssp EEEETTCSHHHHHHHHHHHHHH
T ss_pred cccccccccceecceeeccccc
Confidence 2334689999999999886653
No 47
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=96.82 E-value=0.0059 Score=63.14 Aligned_cols=70 Identities=11% Similarity=0.069 Sum_probs=58.3
Q ss_pred cCCCEEEEeehhhHhhhhc---------CCceEEEEeeCCCcEEEEEeeCCeeccCCcEEecchHHHHHHHHHHHHHhc
Q 009546 201 LRFASAVVHQEGLAAVFGN---------GLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHH 270 (532)
Q Consensus 201 ~~~psv~~~~~avlalya~---------G~~tglVVDiG~~~T~VvpV~dG~vl~~s~~~~~~GG~~lt~~L~~lL~~~ 270 (532)
+.+..|.+.+|++.|+|.. .....+|||||+.+|.++-+.++.+.......++.|...+.+.+.+.+..+
T Consensus 137 i~I~~V~V~PQ~~Ga~~~~~~~~~~~~~~~~~~lVIDIG~~TtD~~~~~~~~~~~~~s~s~~~G~~~~~~~I~~~i~~~ 215 (320)
T TIGR03739 137 VTVRKVLAVPQPQGALVHFVAQHGKLLTGKEQSLIIDPGYFTFDWLVARGMRLVQKRSGSVNGGMSDIYRLLAAEISKD 215 (320)
T ss_pred EEEEEEEEeCCChHHHHHHHhcCCCcccCcCcEEEEecCCCeeeeehccCCEEcccccCCchhHHHHHHHHHHHHHHhh
Confidence 5778899999999887754 234579999999999998887888877777788999999999999888654
No 48
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.44 E-value=0.2 Score=51.16 Aligned_cols=79 Identities=18% Similarity=0.332 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeehhhHh--hhh-----cCC-c---eEEEEeeCCCcEEEEEeeCCeeccCCcEEecch
Q 009546 187 NREIKEMLSIVLRDLRFASAVVHQEGLAA--VFG-----NGL-S---TACVVNMGAQVTSVICVEDGVALPNTEKTLPFG 255 (532)
Q Consensus 187 ~~~~rkl~eilFE~~~~psv~~~~~avla--lya-----~G~-~---tglVVDiG~~~T~VvpV~dG~vl~~s~~~~~~G 255 (532)
+++.-+.-.-.||.-|+....+=.++.+. +|. .|. + ..+|+|||+..|++.-+.+|.++.. +..++|
T Consensus 147 rkE~v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~gk~ly~--r~~~~g 224 (354)
T COG4972 147 RKEVVESRIDAFELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDGKILYT--REVPVG 224 (354)
T ss_pred ehhhhHHHHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEECCeeeeE--eeccCc
Confidence 34432333346888888766665555433 333 122 2 2469999999999999999999864 689999
Q ss_pred HHHHHHHHHHHH
Q 009546 256 GEDISRCLLWTQ 267 (532)
Q Consensus 256 G~~lt~~L~~lL 267 (532)
|+++++.+.+..
T Consensus 225 ~~Qlt~~i~r~~ 236 (354)
T COG4972 225 TDQLTQEIQRAY 236 (354)
T ss_pred HHHHHHHHHHHh
Confidence 999999887654
No 49
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=0.083 Score=54.97 Aligned_cols=88 Identities=20% Similarity=0.302 Sum_probs=56.9
Q ss_pred eEEecCCCCChHHHHHHHHHHHHhcCCCEEEEeehhhHhhhhcCC------ceEEEEeeCCCcEEEE--EeeCCeec-cC
Q 009546 177 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL------STACVVNMGAQVTSVI--CVEDGVAL-PN 247 (532)
Q Consensus 177 ~Vlv~e~~~~~~~~rkl~eilFE~~~~psv~~~~~avlalya~G~------~tglVVDiG~~~T~Vv--pV~dG~vl-~~ 247 (532)
+|+-+|..|+..+ |+.+.=.=---|..-+-+++++.+|+.|+|. .+-||.|+|.++-.|. .|.+|.-- ..
T Consensus 175 AVvTvPAYFNDAQ-rQATKDAGtIAgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlLtIdnGVFeVla 253 (663)
T KOG0100|consen 175 AVVTVPAYFNDAQ-RQATKDAGTIAGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDNGVFEVLA 253 (663)
T ss_pred eEEecchhcchHH-HhhhcccceeccceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEEEEEEcCceEEEEe
Confidence 5666666666544 3333221122355568899999999998885 4679999999986654 55677521 12
Q ss_pred CcEEecchHHHHHHHHHH
Q 009546 248 TEKTLPFGGEDISRCLLW 265 (532)
Q Consensus 248 s~~~~~~GG~~lt~~L~~ 265 (532)
+---..+||.+.++...+
T Consensus 254 TnGDThLGGEDFD~rvm~ 271 (663)
T KOG0100|consen 254 TNGDTHLGGEDFDQRVME 271 (663)
T ss_pred cCCCcccCccchHHHHHH
Confidence 233468999988876544
No 50
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=94.97 E-value=0.042 Score=58.84 Aligned_cols=109 Identities=17% Similarity=0.191 Sum_probs=67.8
Q ss_pred CHHHHHHHHHHHhhhhcCCCCCCCCccceEEecCCCCChHHHHHHHHH---HHHhcCCCEEEEeehhhHhhhhcCC----
Q 009546 149 VLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSI---VLRDLRFASAVVHQEGLAAVFGNGL---- 221 (532)
Q Consensus 149 dwd~le~iw~~i~~~~L~i~~~e~~~~~~Vlv~e~~~~~~~~rkl~ei---lFE~~~~psv~~~~~avlalya~G~---- 221 (532)
|-+.++.|.+.-| ++-++.|++-..- .++|+-.....+-.++.++- ....|=|....+--+++++.+|+|.
T Consensus 64 D~~~i~~~V~~ey-~~Agi~~~die~~-ahIITg~~~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva~~ASg~avLs 141 (475)
T PRK10719 64 DEAAIKELIEEEY-QKAGIAPESIDSG-AVIITGETARKENAREVVMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLS 141 (475)
T ss_pred cHHHHHHHHHHHH-HHcCCCHHHcccc-EEEEEechhHHHHHHHHHHHhcccccceeeeccCccHHHhhhHHHhhHHHhh
Confidence 7889999999887 6788888653211 45555433322222333331 1111111111222344455555552
Q ss_pred ----ceEEEEeeCCCcEEEEEeeCCeeccCCcEEecchHHHHHH
Q 009546 222 ----STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISR 261 (532)
Q Consensus 222 ----~tglVVDiG~~~T~VvpV~dG~vl~~s~~~~~~GG~~lt~ 261 (532)
...++||||+++|+++-..+|.++.. ..+++||++||.
T Consensus 142 eEke~gVa~IDIGgGTT~iaVf~~G~l~~T--~~l~vGG~~IT~ 183 (475)
T PRK10719 142 EERNTRVLNIDIGGGTANYALFDAGKVIDT--ACLNVGGRLIET 183 (475)
T ss_pred hhccCceEEEEeCCCceEEEEEECCEEEEE--EEEecccceEEE
Confidence 35799999999999999999998854 568999999886
No 51
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=94.48 E-value=0.014 Score=55.34 Aligned_cols=81 Identities=22% Similarity=0.244 Sum_probs=65.7
Q ss_pred HHHhcCCCEEEEeehhhHhhhhcCCceEEEEeeCCCcEEEEEeeCCeeccCCcEEecchHHHHHHHHHHHHHhcCCCCCc
Q 009546 197 VLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQI 276 (532)
Q Consensus 197 lFE~~~~psv~~~~~avlalya~G~~tglVVDiG~~~T~VvpV~dG~vl~~s~~~~~~GG~~lt~~L~~lL~~~~~~p~~ 276 (532)
+.|.-|...++++.++.++++-.+...|.|||+|.++|-|.-+-+|.++..+ --+-||.++|-.|. ++
T Consensus 115 ViESAGlevl~vlDEPTAaa~vL~l~dg~VVDiGGGTTGIsi~kkGkViy~A--DEpTGGtHmtLvlA------G~---- 182 (277)
T COG4820 115 VIESAGLEVLHVLDEPTAAADVLQLDDGGVVDIGGGTTGISIVKKGKVIYSA--DEPTGGTHMTLVLA------GN---- 182 (277)
T ss_pred eecccCceeeeecCCchhHHHHhccCCCcEEEeCCCcceeEEEEcCcEEEec--cCCCCceeEEEEEe------cc----
Confidence 4688899999999999999999999999999999999999999999998654 35789988774432 21
Q ss_pred ccccccccchHHHHHHHHH
Q 009546 277 RTDILTKAMDLLMLNRIKE 295 (532)
Q Consensus 277 ~~~~l~~~~d~~~~~~iKe 295 (532)
..++.+-++++|.
T Consensus 183 ------ygi~~EeAE~~Kr 195 (277)
T COG4820 183 ------YGISLEEAEQYKR 195 (277)
T ss_pred ------cCcCHhHHHHhhh
Confidence 1245677887774
No 52
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=91.77 E-value=0.29 Score=50.56 Aligned_cols=70 Identities=21% Similarity=0.275 Sum_probs=50.5
Q ss_pred hcCCCEEEEeehhhHhhhhcC-----CceEEEEeeCCCcEEEEEeeCCeecc-CCcEEecchHHHHHHHHHHHHHh
Q 009546 200 DLRFASAVVHQEGLAAVFGNG-----LSTACVVNMGAQVTSVICVEDGVALP-NTEKTLPFGGEDISRCLLWTQRH 269 (532)
Q Consensus 200 ~~~~psv~~~~~avlalya~G-----~~tglVVDiG~~~T~VvpV~dG~vl~-~s~~~~~~GG~~lt~~L~~lL~~ 269 (532)
.+.+..|.+.+|++.|.|..- ..+.+|||||+.+|.++-|.++.... .+....+.|-..+.+.+.+.|..
T Consensus 137 ~i~I~~V~V~PQ~~~A~~~~~~~~~~~~~~lVVDIGG~T~Dv~~v~~~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~ 212 (318)
T PF06406_consen 137 TITIKDVEVFPQSVGAVFDALMDLDEDESVLVVDIGGRTTDVAVVRGGLPDISKCSGTPEIGVSDLYDAIAQALRS 212 (318)
T ss_dssp --EEEEEEEEESSHHHHHHHHHTS-TTSEEEEEEE-SS-EEEEEEEGGG--EEEEEEETTSSTHHHHHHHHHHTT-
T ss_pred eEEEeeEEEEcccHHHHHHHHHhhcccCcEEEEEcCCCeEEeeeecCCccccchhccCCchhHHHHHHHHHHHHHH
Confidence 445779999999999988752 35689999999999999887765443 33334578999999999888765
No 53
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=91.15 E-value=0.71 Score=49.68 Aligned_cols=105 Identities=21% Similarity=0.251 Sum_probs=76.1
Q ss_pred CHHHHHHHHHHHhhhhcCCCCCCCCccceEEecCCCCChHHHHHHHHHHHHhcCCCEEEEe-----ehhhHhhhhcCC--
Q 009546 149 VLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVH-----QEGLAAVFGNGL-- 221 (532)
Q Consensus 149 dwd~le~iw~~i~~~~L~i~~~e~~~~~~Vlv~e~~~~~~~~rkl~eilFE~~~~psv~~~-----~~avlalya~G~-- 221 (532)
|-+.++.|.+.-| ++-++.|++-. -.+|++|-..-.+.--+++++.|-+..|= +.++ -++++|..|+|.
T Consensus 61 D~~al~~iv~~eY-~~Agi~p~~I~-TGAVIITGETArKeNA~~v~~~Ls~~aGD--FVVATAGPdLEsiiAgkGsGA~~ 136 (473)
T PF06277_consen 61 DAEALKEIVEEEY-RKAGITPEDID-TGAVIITGETARKENAREVLHALSGFAGD--FVVATAGPDLESIIAGKGSGAAA 136 (473)
T ss_pred CHHHHHHHHHHHH-HHcCCCHHHCc-cccEEEecchhhhhhHHHHHHHHHHhcCC--EEEEccCCCHHHHHhccCccHHH
Confidence 7899999999987 67899887531 22788886655444334577777665442 2222 377899999983
Q ss_pred ------ceEEEEeeCCCcEEEEEeeCCeeccCCcEEecchHHHH
Q 009546 222 ------STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDI 259 (532)
Q Consensus 222 ------~tglVVDiG~~~T~VvpV~dG~vl~~s~~~~~~GG~~l 259 (532)
.+-+=+|||.++|.++-..+|.++..++ +++||+.|
T Consensus 137 ~S~~~~~~V~NiDIGGGTtN~avf~~G~v~~T~c--l~IGGRLi 178 (473)
T PF06277_consen 137 LSKEHHTVVANIDIGGGTTNIAVFDNGEVIDTAC--LDIGGRLI 178 (473)
T ss_pred HhhhhCCeEEEEEeCCCceeEEEEECCEEEEEEE--EeeccEEE
Confidence 3456689999999999999999996654 89999743
No 54
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=90.33 E-value=11 Score=42.24 Aligned_cols=91 Identities=16% Similarity=0.263 Sum_probs=64.4
Q ss_pred EEecCCCCChHHHHHHHHHHHHhcCCCEEEEeehhhHhhhhcCC------------ceEEEEeeCCCcEEEEEee--CCe
Q 009546 178 ILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL------------STACVVNMGAQVTSVICVE--DGV 243 (532)
Q Consensus 178 Vlv~e~~~~~~~~rkl~eilFE~~~~psv~~~~~avlalya~G~------------~tglVVDiG~~~T~VvpV~--dG~ 243 (532)
++-+|..|+..+.|-++.. -...|+.-+.++.+..+++.++|. .+-+-||+||+.++|+-+- -|.
T Consensus 141 vIavP~~FTd~qRravldA-A~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF~kG~ 219 (727)
T KOG0103|consen 141 VIAVPSYFTDSQRRAVLDA-ARIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFTKGK 219 (727)
T ss_pred eEeccccccHHHHHHHHhH-HhhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeeeccCc
Confidence 5556667777775555553 345788889999999999888884 2368899999999887663 443
Q ss_pred ec-cCCcEEecchHHHHHHHHHHHHHh
Q 009546 244 AL-PNTEKTLPFGGEDISRCLLWTQRH 269 (532)
Q Consensus 244 vl-~~s~~~~~~GG~~lt~~L~~lL~~ 269 (532)
.- -.+.---.+||++.++.|.+....
T Consensus 220 lkvl~ta~D~~lGgr~fDe~L~~hfa~ 246 (727)
T KOG0103|consen 220 LKVLATAFDRKLGGRDFDEALIDHFAK 246 (727)
T ss_pred ceeeeeecccccccchHHHHHHHHHHH
Confidence 21 122233479999999998876654
No 55
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=88.97 E-value=1.5 Score=48.85 Aligned_cols=89 Identities=19% Similarity=0.305 Sum_probs=64.6
Q ss_pred eEEecCCCCChHHHHHHHHHHHHhcCCCEEEEeehhhHhhhhcCC-------ceEEEEeeCCCcEEEEEee--CCe-ecc
Q 009546 177 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-------STACVVNMGAQVTSVICVE--DGV-ALP 246 (532)
Q Consensus 177 ~Vlv~e~~~~~~~~rkl~eilFE~~~~psv~~~~~avlalya~G~-------~tglVVDiG~~~T~VvpV~--dG~-vl~ 246 (532)
.|+.+|..|+..+ |..++-.-...|++.+-+++++.+++.++|. .+-||.|.|++...|..+. +|. .+.
T Consensus 146 aviTVPa~F~~~Q-r~at~~A~~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~gG~~~vk 224 (620)
T KOG0101|consen 146 AVVTVPAYFNDSQ-RAATKDAALIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGGIFEVK 224 (620)
T ss_pred EEEEecCCcCHHH-HHHHHHHHHhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEEeccchhhhh
Confidence 4555555666554 4566666667788999999999999999884 3559999999999988885 453 222
Q ss_pred CCcEEecchHHHHHHHHHHH
Q 009546 247 NTEKTLPFGGEDISRCLLWT 266 (532)
Q Consensus 247 ~s~~~~~~GG~~lt~~L~~l 266 (532)
...--.++||.++++.|.+.
T Consensus 225 at~gd~~lGGedf~~~l~~h 244 (620)
T KOG0101|consen 225 ATAGDTHLGGEDFDNKLVNH 244 (620)
T ss_pred hhcccccccchhhhHHHHHH
Confidence 33344789999988877653
No 56
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=88.18 E-value=3.5 Score=42.55 Aligned_cols=93 Identities=18% Similarity=0.282 Sum_probs=58.4
Q ss_pred CHHHHHHHHHHHhhhhcCCCCCCCCccceEEecCCC---CChHH--HHHHHHHHHHhcCCCEEEEeehh-hH--------
Q 009546 149 VLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPES---FDNRE--IKEMLSIVLRDLRFASAVVHQEG-LA-------- 214 (532)
Q Consensus 149 dwd~le~iw~~i~~~~L~i~~~e~~~~~~Vlv~e~~---~~~~~--~rkl~eilFE~~~~psv~~~~~a-vl-------- 214 (532)
+.+.+...+..++ +.+... ..+ .|.||-.. |..|+ ++.+++.+-+.|+-+-.++.... ++
T Consensus 34 ~~~~L~~~l~~~~-~~~~~~-~~~----avtMTgELaD~f~~r~~GV~~i~~~~~~~~~~~~~i~~s~GG~~s~~~a~~~ 107 (318)
T TIGR03123 34 GNDKLAETLKEIS-QDLSSA-DNV----AVTMTGELADCFEDKAEGVEFILAAVESAFGSPVSVFASDGGFVSAEEALTN 107 (318)
T ss_pred CchHHHHHHHHHH-HhcCcc-ceE----EEEeehhhhhhhcCHHHHHHHHHHHHHHhcCCCeEEEecCCCCccHHHHHHh
Confidence 4466777777776 344321 334 67777553 44443 44577878888866433322222 11
Q ss_pred -------------hhhhcCCceEEEEeeCCCcEEEEEeeCCeeccC
Q 009546 215 -------------AVFGNGLSTACVVNMGAQVTSVICVEDGVALPN 247 (532)
Q Consensus 215 -------------alya~G~~tglVVDiG~~~T~VvpV~dG~vl~~ 247 (532)
+.++.....++++|+|..+|.|+||.+|.+...
T Consensus 108 pv~~~~Sg~~a~A~~la~~~~~~I~~DmGGTTtDi~~i~~G~p~~~ 153 (318)
T TIGR03123 108 PLDVAAANWLATAQLIAKRIPECLFVDMGSTTTDIIPIIDGEVAAK 153 (318)
T ss_pred HHHHHHhhHHHHHHHHHhcCCCEEEEEcCccceeeEEecCCEeeee
Confidence 112233578999999999999999999998743
No 57
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=86.50 E-value=11 Score=37.33 Aligned_cols=100 Identities=16% Similarity=0.100 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHHhhhhcCCCCCCCCccceEEecCCCCChHHHHHHHHHHHHhcCCCEEEEeehhhHhh----hhcCCceE
Q 009546 149 VLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAV----FGNGLSTA 224 (532)
Q Consensus 149 dwd~le~iw~~i~~~~L~i~~~e~~~~~~Vlv~e~~~~~~~~rkl~eilFE~~~~psv~~~~~avlal----ya~G~~tg 224 (532)
.|+...+.+..++ +++++++.+.. .+.++- .... ++ .|-. ..+.+-++-+ +-.. ...
T Consensus 33 ~~~~~~~~l~~~~-~~~~~~~~~i~---~i~~Tg--~~~~----~v--~~~~------~~~~ei~~~~~g~~~~~~-~~~ 93 (248)
T TIGR00241 33 VIEETARAILEAL-KEAGIGLEPID---KIVATG--YGRH----KV--GFAD------KIVTEISCHGKGANYLAP-EAR 93 (248)
T ss_pred CHHHHHHHHHHHH-HHcCCChhhee---EEEEEC--CCcc----cc--cccC------CceEEhhHHHHHHHHHCC-CCC
Confidence 7888888888887 56666654432 343332 1111 10 1111 1233333322 2222 234
Q ss_pred EEEeeCCCcEEEEEeeCCeeccCCc-EEecchHHHHHHHHHHHH
Q 009546 225 CVVNMGAQVTSVICVEDGVALPNTE-KTLPFGGEDISRCLLWTQ 267 (532)
Q Consensus 225 lVVDiG~~~T~VvpV~dG~vl~~s~-~~~~~GG~~lt~~L~~lL 267 (532)
.|||||++.|.++-+.+|.+..-.. .....|+...++.+.+.|
T Consensus 94 ~vidiGgqd~k~i~~~~g~~~~~~~n~~ca~Gtg~f~e~~a~~l 137 (248)
T TIGR00241 94 GVIDIGGQDSKVIKIDDGKVDDFTMNDKCAAGTGRFLEVTARRL 137 (248)
T ss_pred EEEEecCCeeEEEEECCCcEeeeeecCcccccccHHHHHHHHHc
Confidence 6999999999999999998763222 235677776666665443
No 58
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=84.34 E-value=4.9 Score=35.14 Aligned_cols=58 Identities=22% Similarity=0.278 Sum_probs=38.9
Q ss_pred EEEeeCCCcEEEEEeeCCeeccCCcEEecch--------HHHHH--HHHHHHHHhcCCCCCcccccccccchHHHHHHH-
Q 009546 225 CVVNMGAQVTSVICVEDGVALPNTEKTLPFG--------GEDIS--RCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRI- 293 (532)
Q Consensus 225 lVVDiG~~~T~VvpV~dG~vl~~s~~~~~~G--------G~~lt--~~L~~lL~~~~~~p~~~~~~l~~~~d~~~~~~i- 293 (532)
++||+|+++|.++-..+|..-. ...+++| |.+|+ +-+.+-++. ..+.+|++
T Consensus 2 ~~iDiGs~~~~~~i~~~~~~~~--~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~----------------a~~~AE~~~ 63 (120)
T PF14450_consen 2 VVIDIGSSKTKVAIAEDGSDGY--IRVLGVGEVPSKGIKGGHITDIEDISKAIKI----------------AIEEAERLA 63 (120)
T ss_dssp EEEEE-SSSEEEEEEETTEEEE--EEEES----------HHHHH--HHHHHHHT------------------HHHHHHH-
T ss_pred EEEEcCCCcEEEEEEEeCCCCc--EEEEEEecccccccCCCEEEEHHHHHHHHHH----------------HHHHHHHHh
Confidence 6899999999998888876654 6778999 99999 777765542 12456777
Q ss_pred HHHceec
Q 009546 294 KESYCEI 300 (532)
Q Consensus 294 Ke~~c~v 300 (532)
|.++..+
T Consensus 64 k~~i~~v 70 (120)
T PF14450_consen 64 KCEIGSV 70 (120)
T ss_dssp HHHH--S
T ss_pred CCeeeEE
Confidence 7666543
No 59
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=83.53 E-value=1.4 Score=45.00 Aligned_cols=32 Identities=34% Similarity=0.434 Sum_probs=23.3
Q ss_pred hhh-hcCCceEEEEeeCCCcEEEEEeeCCeecc
Q 009546 215 AVF-GNGLSTACVVNMGAQVTSVICVEDGVALP 246 (532)
Q Consensus 215 aly-a~G~~tglVVDiG~~~T~VvpV~dG~vl~ 246 (532)
+++ ..|..++++||||..+|.|.+|.||.+..
T Consensus 69 a~~~~~g~~~~i~vDmGGTTtDi~~i~~G~p~~ 101 (290)
T PF01968_consen 69 AAARLTGLENAIVVDMGGTTTDIALIKDGRPEI 101 (290)
T ss_dssp HHH--HT-SSEEEEEE-SS-EEEEEEETTEE--
T ss_pred hhhhcCCCCCEEEEeCCCCEEEEEEEECCeeec
Confidence 445 55788999999999999999999999863
No 60
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=82.85 E-value=2.7 Score=42.55 Aligned_cols=69 Identities=16% Similarity=0.290 Sum_probs=48.1
Q ss_pred HHHHHHHHhcCCCEEEEeeh---hhHhhh----hc-CCceEEEEeeCCCcEEEEEeeCCeeccCCcEEecchHHHHHHHH
Q 009546 192 EMLSIVLRDLRFASAVVHQE---GLAAVF----GN-GLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCL 263 (532)
Q Consensus 192 kl~eilFE~~~~psv~~~~~---avlaly----a~-G~~tglVVDiG~~~T~VvpV~dG~vl~~s~~~~~~GG~~lt~~L 263 (532)
.+++-+.+..|++ +-++.. +-++.. +. ....++|||+|.++|.++.+.+|.+.. ...+|+|.-.+++.+
T Consensus 75 ~~~~~i~~~tGi~-i~iIsgeeEa~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~~--~~Sl~lG~vrl~e~~ 151 (285)
T PF02541_consen 75 EFLDRIKKETGID-IEIISGEEEARLSFLGVLSSLPPDKNGLVIDIGGGSTELILFENGKVVF--SQSLPLGAVRLTERF 151 (285)
T ss_dssp HHHHHHHHHHSS--EEEE-HHHHHHHHHHHHHHHSTTTSSEEEEEEESSEEEEEEEETTEEEE--EEEES--HHHHHHHH
T ss_pred HHHHHHHHHhCCc-eEEecHHHHHHHHHHHHHhhccccCCEEEEEECCCceEEEEEECCeeeE--eeeeehHHHHHHHHH
Confidence 4777788888886 444443 222222 22 556899999999999999999998874 467999998888765
No 61
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=79.82 E-value=11 Score=37.97 Aligned_cols=91 Identities=15% Similarity=0.158 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeehhhHhhhhcCCc-----eEEEEeeCCCcEEEEEee-CCeeccCCcEEecchHHHHHH
Q 009546 188 REIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS-----TACVVNMGAQVTSVICVE-DGVALPNTEKTLPFGGEDISR 261 (532)
Q Consensus 188 ~~~rkl~eilFE~~~~psv~~~~~avlalya~G~~-----tglVVDiG~~~T~VvpV~-dG~vl~~s~~~~~~GG~~lt~ 261 (532)
...+++++.+-+.+|++.-.-..++-+|..|+=.+ --.|+|+|+++|...-+- +|.+. ..++-=+|+-+|-
T Consensus 95 l~M~~iA~~l~~~lgv~V~igGvEAemAi~GALTTPGt~~PlaIlDmG~GSTDAsii~~~g~v~---~iHlAGAG~mVTm 171 (332)
T PF08841_consen 95 LQMQMIADELEEELGVPVEIGGVEAEMAILGALTTPGTDKPLAILDMGGGSTDASIINRDGEVT---AIHLAGAGNMVTM 171 (332)
T ss_dssp -TCHHHHHHHHHHHTSEEEEECEHHHHHHHHHTTSTT--SSEEEEEE-SSEEEEEEE-TTS-EE---EEEEE-SHHHHHH
T ss_pred ccHHHHHHHHHHHHCCceEEccccHHHHHhcccCCCCCCCCeEEEecCCCcccHHHhCCCCcEE---EEEecCCchhhHH
Confidence 34446888999999999999999999999887433 247899999999988885 55543 2345556788887
Q ss_pred HHHHHHHhcCCCCCcccccccccchHHHHHHHHHH
Q 009546 262 CLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKES 296 (532)
Q Consensus 262 ~L~~lL~~~~~~p~~~~~~l~~~~d~~~~~~iKe~ 296 (532)
.+..-| + ..|++++|+||..
T Consensus 172 lI~sEL---G------------l~d~~lAE~IKky 191 (332)
T PF08841_consen 172 LINSEL---G------------LEDRELAEDIKKY 191 (332)
T ss_dssp HHHHHC---T-------------S-HHHHHHHHHS
T ss_pred HHHHhh---C------------CCCHHHHHHhhhc
Confidence 766443 2 1367899999964
No 62
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=71.42 E-value=1.7 Score=43.59 Aligned_cols=50 Identities=26% Similarity=0.471 Sum_probs=36.5
Q ss_pred hCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCccceEeceeeee
Q 009546 432 CSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLG 488 (532)
Q Consensus 432 ~NIvL~GG~S~i~Gf~eRL~~EL~~~~p~~~~~~~V~v~~~~~~~~~~aW~GgSIla 488 (532)
.+|+++||.++-+|+...|+++|... + . .+.+.. +.+|++..=+||+++|
T Consensus 213 ~~v~~~GGva~n~~~~~~le~~l~~~-~----~-~~~v~~-~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 213 GTVLCTGGLALDAGLLEALKDAIQEA-K----M-AVAAEN-HPDAIYAGAIGAALWG 262 (262)
T ss_pred CcEEEECcccccHHHHHHHHHHhccC-C----c-ceEecC-CCcchHHHHHHHHHcC
Confidence 36999999999999999999998532 0 1 234442 3577888778887764
No 63
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=70.83 E-value=16 Score=41.51 Aligned_cols=91 Identities=16% Similarity=0.222 Sum_probs=62.4
Q ss_pred EEecCCCCChHHHHHHHHHHHHhcCCCEEEEeehhhHhhhhcCC----------ceEEEEeeCCCcEEEEEee----CCe
Q 009546 178 ILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL----------STACVVNMGAQVTSVICVE----DGV 243 (532)
Q Consensus 178 Vlv~e~~~~~~~~rkl~eilFE~~~~psv~~~~~avlalya~G~----------~tglVVDiG~~~T~VvpV~----dG~ 243 (532)
|+-+|+.|+..+.|-+++ .-+-.|..-++++++..+++..+|. ..-+|-|+|++.|+++-|. .+.
T Consensus 162 ViTVP~~F~qaeR~all~-Aa~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~k 240 (902)
T KOG0104|consen 162 VITVPPFFNQAERRALLQ-AAQIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVKTK 240 (902)
T ss_pred EEeCCcccCHHHHHHHHH-HHHhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEeeccc
Confidence 555666677766443443 3445677889999999999988874 3579999999999998874 111
Q ss_pred ecc---CCcE------EecchHHHHHHHHHHHHHh
Q 009546 244 ALP---NTEK------TLPFGGEDISRCLLWTQRH 269 (532)
Q Consensus 244 vl~---~s~~------~~~~GG~~lt~~L~~lL~~ 269 (532)
-.. ..++ ...+||..++..|...|..
T Consensus 241 ~~g~~~p~i~~~gvGfd~tLGG~e~~~rLr~~l~~ 275 (902)
T KOG0104|consen 241 EQGGKQPQIQVLGVGFDRTLGGLEMTMRLRDHLAN 275 (902)
T ss_pred cccCccceEEEEeeccCCccchHHHHHHHHHHHHH
Confidence 111 1122 2367899999998887754
No 64
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=69.28 E-value=33 Score=37.77 Aligned_cols=90 Identities=21% Similarity=0.231 Sum_probs=65.0
Q ss_pred EecCCCCChHHHHHHHHHHHHhcCCCEEEEeehhhHhhhhcCCc-----eEEEEeeCCCcEEEE--EeeCCeecc-CCcE
Q 009546 179 LVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS-----TACVVNMGAQVTSVI--CVEDGVALP-NTEK 250 (532)
Q Consensus 179 lv~e~~~~~~~~rkl~eilFE~~~~psv~~~~~avlalya~G~~-----tglVVDiG~~~T~Vv--pV~dG~vl~-~s~~ 250 (532)
+++-|.|-+...|+.+.=+..-.|..-+-+++++-+|+.++|.. +-.|-|+|.++..|. -|.+|.--- .+-.
T Consensus 164 vvtvpAyfndsqRqaTkdag~iagl~vlrvineptaaalaygld~k~~g~iaV~dLgggtfdisilei~~gvfevksTng 243 (640)
T KOG0102|consen 164 VITVPAYFNDSQRQATKDAGQIAGLNVLRVINEPTAAALAYGLDKKEDGVIAVFDLGGGTFDISILEIEDGVFEVKSTNG 243 (640)
T ss_pred eeccHHHHhHHHHHHhHhhhhhccceeeccCCccchhHHhhcccccCCCceEEEEcCCceeeeeeehhccceeEEEeccC
Confidence 44556655555556666666677888889999999999999864 457899999876554 456886443 2334
Q ss_pred EecchHHHHHHHHHHHHH
Q 009546 251 TLPFGGEDISRCLLWTQR 268 (532)
Q Consensus 251 ~~~~GG~~lt~~L~~lL~ 268 (532)
....||.+++.++..++-
T Consensus 244 dtflggedfd~~~~~~~v 261 (640)
T KOG0102|consen 244 DTHLGGEDFDNALVRFIV 261 (640)
T ss_pred ccccChhHHHHHHHHHHH
Confidence 678899999999887654
No 65
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=66.75 E-value=2.7 Score=44.48 Aligned_cols=53 Identities=11% Similarity=0.219 Sum_probs=39.4
Q ss_pred HhhhCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCccceEeceeeee
Q 009546 429 KLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLG 488 (532)
Q Consensus 429 ~L~~NIvL~GG~S~i~Gf~eRL~~EL~~~~p~~~~~~~V~v~~~~~~~~~~aW~GgSIla 488 (532)
.+-..|+++||.++-+|+...|++.|....+.. +|.| +.++++..=+||+++|
T Consensus 380 ~i~~~VvftGGvA~N~gvv~aLe~~L~~~~~~~----~V~V---p~~pq~~GALGAAL~a 432 (432)
T TIGR02259 380 GITDQFTFTGGVAKNEAAVKELRKLIKENYGEV----QINI---DPDSIYTGALGASEFA 432 (432)
T ss_pred CCCCCEEEECCccccHHHHHHHHHHHccccCCC----eEec---CCCccHHHHHHHHHhC
Confidence 345689999999999999999999986543211 3444 2478888888888764
No 66
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=62.32 E-value=2.3 Score=45.09 Aligned_cols=49 Identities=27% Similarity=0.365 Sum_probs=38.3
Q ss_pred HhhhCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCccceEeceeeeec
Q 009546 429 KLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGI 489 (532)
Q Consensus 429 ~L~~NIvL~GG~S~i~Gf~eRL~~EL~~~~p~~~~~~~V~v~~~~~~~~~~aW~GgSIlas 489 (532)
.+-+.|+++||.++.+|+...|++.|.. +|.|. .+|++..=+||+++|+
T Consensus 354 ~i~~~VvftGGva~N~gvv~ale~~Lg~---------~iivP---e~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 354 DVREPVILVGGTSLIEGLVKALGDLLGI---------EVVVP---EYSQYIGAVGAALLAS 402 (404)
T ss_pred CCCCcEEEECChhhhHHHHHHHHHHhCC---------cEEEC---CcccHHHHHHHHHHhc
Confidence 3444599999999999999999988841 34443 4788888899998874
No 67
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=61.46 E-value=5.5 Score=39.58 Aligned_cols=93 Identities=18% Similarity=0.313 Sum_probs=52.0
Q ss_pred CcccCHHHHHHHHHHHhhhhcCCCCCCCCccceEEecCCC---CChHH--HHHHHHHHHHhcCCCEEEEeeh-hhHhh--
Q 009546 145 PMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPES---FDNRE--IKEMLSIVLRDLRFASAVVHQE-GLAAV-- 216 (532)
Q Consensus 145 ~~q~dwd~le~iw~~i~~~~L~i~~~e~~~~~~Vlv~e~~---~~~~~--~rkl~eilFE~~~~psv~~~~~-avlal-- 216 (532)
||=..-+.++..++.+-.+ .+.+.. .|+||-.. |..+. ++-+.+-+=.-|++|--++-.+ .+.+.
T Consensus 33 PMWk~k~rL~~~Lkei~~k----~~~~~v---gvvMTaELaD~f~tk~eGVe~Ii~~v~~Af~~pv~~v~~~G~~~ssEa 105 (330)
T COG1548 33 PMWKKKDRLEETLKEIVHK----DNVDYV---GVVMTAELADAFKTKAEGVEDIIDTVEKAFNCPVYVVDVNGNFLSSEA 105 (330)
T ss_pred ccccchhHHHHHHHHHhcc----CCccee---EEEeeHHHHHHhhhHHhHHHHHHHHHHHhcCCceEEEeccCcCcChhH
Confidence 4433446677666666532 222322 56776543 43332 2336665666677884332221 11110
Q ss_pred ------hh-c------------CCceEEEEeeCCCcEEEEEeeCCee
Q 009546 217 ------FG-N------------GLSTACVVNMGAQVTSVICVEDGVA 244 (532)
Q Consensus 217 ------ya-~------------G~~tglVVDiG~~~T~VvpV~dG~v 244 (532)
++ + -..+++.||+|..+|.++||.+|.+
T Consensus 106 ~~~~~~vAAaNW~Ata~~~~e~~~dsci~VD~GSTTtDIIPi~~ge~ 152 (330)
T COG1548 106 LKNPREVAAANWVATARFLAEEIKDSCILVDMGSTTTDIIPIKDGEA 152 (330)
T ss_pred hcCHHHHHHhhhHHHHHHHHHhcCCceEEEecCCcccceEeecchhh
Confidence 01 1 1357999999999999999999973
No 68
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=61.28 E-value=2.6 Score=42.88 Aligned_cols=50 Identities=16% Similarity=0.209 Sum_probs=38.7
Q ss_pred HhhhCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCccceEeceeeeec
Q 009546 429 KLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGI 489 (532)
Q Consensus 429 ~L~~NIvL~GG~S~i~Gf~eRL~~EL~~~~p~~~~~~~V~v~~~~~~~~~~aW~GgSIlas 489 (532)
.+-..|+++||.+.-+|+...|+++|.. +|.++ +.+|++..=+|++++|.
T Consensus 238 ~i~~~v~~~GGva~N~~l~~al~~~Lg~---------~v~~~--p~~p~~~GAlGAAL~A~ 287 (293)
T TIGR03192 238 GVEEGFFITGGIAKNPGVVKRIERILGI---------KAVDT--KIDSQIAGALGAALFGY 287 (293)
T ss_pred CCCCCEEEECcccccHHHHHHHHHHhCC---------CceeC--CCCccHHHHHHHHHHHH
Confidence 4556799999999999999999998852 23323 24678888899998873
No 69
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=57.50 E-value=15 Score=40.38 Aligned_cols=69 Identities=20% Similarity=0.148 Sum_probs=46.9
Q ss_pred HHHHHHHHhcCCCEEEEee---hhhHhhhhc-----CCceEEEEeeCCCcEEEEEeeCCeeccCCcEEecchHHHHHHHH
Q 009546 192 EMLSIVLRDLRFASAVVHQ---EGLAAVFGN-----GLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCL 263 (532)
Q Consensus 192 kl~eilFE~~~~psv~~~~---~avlalya~-----G~~tglVVDiG~~~T~VvpV~dG~vl~~s~~~~~~GG~~lt~~L 263 (532)
.+++-+.+..|++ |-++. ++-++.+|. ....++|||||.++|.++-+.+|.+.. ...+++|.-.+++.+
T Consensus 95 ~fl~~i~~~tGl~-ievIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~~--~~Sl~lG~vrl~e~f 171 (496)
T PRK11031 95 EFLAKAQEILGCP-VQVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTGAQATS--LFSLSMGCVTWLERY 171 (496)
T ss_pred HHHHHHHHHHCCC-eEEeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEecCCceee--eeEEeccchHHHHHh
Confidence 4677777777876 44444 333332221 113589999999999999998888763 467899988776543
No 70
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=54.09 E-value=3 Score=46.76 Aligned_cols=66 Identities=17% Similarity=0.258 Sum_probs=41.7
Q ss_pred HHHHHHHHHhcCCChHHHHHhhhCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCccceEeceeeeec
Q 009546 410 LAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGI 489 (532)
Q Consensus 410 L~e~I~~sI~~~~~~d~r~~L~~NIvL~GG~S~i~Gf~eRL~~EL~~~~p~~~~~~~V~v~~~~~~~~~~aW~GgSIlas 489 (532)
+.++|.+++..+ ... ..=...|+|+||+|.+|.+.+.|++.+.. .+.. ..+|..++=.||+++|.
T Consensus 311 ~~~~i~~~l~~~-~~~--~~~i~~V~lvGG~sr~p~v~~~l~~~f~~---------~~~~---~~~p~~aVA~GAa~~a~ 375 (602)
T PF00012_consen 311 IIEPIEKALKDA-GLK--KEDIDSVLLVGGSSRIPYVQEALKELFGK---------KISK---SVNPDEAVARGAALYAA 375 (602)
T ss_dssp THHHHHHHHHHT-T----GGGESEEEEESGGGGSHHHHHHHHHHTTS---------EEB----SS-TTTHHHHHHHHHHH
T ss_pred cccccccccccc-ccc--ccccceeEEecCcccchhhhhhhhhcccc---------cccc---ccccccccccccccchh
Confidence 455666666554 222 23346799999999999999998766531 1111 23556677788888875
Q ss_pred c
Q 009546 490 L 490 (532)
Q Consensus 490 L 490 (532)
.
T Consensus 376 ~ 376 (602)
T PF00012_consen 376 I 376 (602)
T ss_dssp H
T ss_pred h
Confidence 3
No 71
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=49.44 E-value=17 Score=37.07 Aligned_cols=70 Identities=20% Similarity=0.199 Sum_probs=48.3
Q ss_pred HHHHHHHHhcCCCEEEEeeh---hhHhhhhc----CCceEEEEeeCCCcEEEEEeeCCeeccCCcEEecchHHHHHHHHH
Q 009546 192 EMLSIVLRDLRFASAVVHQE---GLAAVFGN----GLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLL 264 (532)
Q Consensus 192 kl~eilFE~~~~psv~~~~~---avlalya~----G~~tglVVDiG~~~T~VvpV~dG~vl~~s~~~~~~GG~~lt~~L~ 264 (532)
.+++.+.+..|+. +-++.. +.++..|. ....++|||+|.++|.++.+.+|.+. ....+++|.-.+++.+.
T Consensus 89 ~~~~~i~~~tgi~-i~visg~eEa~l~~~gv~~~~~~~~~~v~DiGGGSte~~~~~~~~~~--~~~Sl~lG~vrl~e~f~ 165 (300)
T TIGR03706 89 EFLREAEAILGLP-IEVISGEEEARLIYLGVAHTLPIADGLVVDIGGGSTELILGKDFEPG--EGVSLPLGCVRLTEQFF 165 (300)
T ss_pred HHHHHHHHHHCCC-eEEeChHHHHHHHHHHHHhCCCCCCcEEEEecCCeEEEEEecCCCEe--EEEEEccceEEhHHhhC
Confidence 4677777777764 445543 33332221 22357999999999999999888765 34689999888887653
No 72
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=48.30 E-value=13 Score=40.91 Aligned_cols=69 Identities=19% Similarity=0.225 Sum_probs=44.2
Q ss_pred HHHHHHHHhcCCCEEEEee---hhhHhhhhc----C-CceEEEEeeCCCcEEEEEeeCCeeccCCcEEecchHHHHHHHH
Q 009546 192 EMLSIVLRDLRFASAVVHQ---EGLAAVFGN----G-LSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCL 263 (532)
Q Consensus 192 kl~eilFE~~~~psv~~~~---~avlalya~----G-~~tglVVDiG~~~T~VvpV~dG~vl~~s~~~~~~GG~~lt~~L 263 (532)
+..+.+-+.+|++ +-++. ++-++.+|. + ...+||+|||.++|.++=+.+..+. ....+++|.-.+++.+
T Consensus 92 eFl~rv~~~~G~~-ievIsGeeEArl~~lGv~~~~~~~~~~lv~DIGGGStEl~~g~~~~~~--~~~Sl~~G~v~lt~~~ 168 (492)
T COG0248 92 EFLARVEKELGLP-IEVISGEEEARLIYLGVASTLPRKGDGLVIDIGGGSTELVLGDNFEIG--LLISLPLGCVRLTERF 168 (492)
T ss_pred HHHHHHHHHhCCc-eEEeccHHHHHHHHHHHHhcCCCCCCEEEEEecCCeEEEEEecCCccc--eeEEeecceEEeehhh
Confidence 3555556667876 33332 444444332 2 5679999999999999988766554 3456778766555543
No 73
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=46.90 E-value=34 Score=34.16 Aligned_cols=45 Identities=33% Similarity=0.359 Sum_probs=36.4
Q ss_pred hcCCCEEEEeehhhHhhhhcC-------CceEEEEeeCCCcEEEEEeeCCeec
Q 009546 200 DLRFASAVVHQEGLAAVFGNG-------LSTACVVNMGAQVTSVICVEDGVAL 245 (532)
Q Consensus 200 ~~~~psv~~~~~avlalya~G-------~~tglVVDiG~~~T~VvpV~dG~vl 245 (532)
..+... ++.....+|.+|+- ....+|||||-+.|-.+-|.+|.+.
T Consensus 139 ~~~~~~-~vmDTg~AAvlGal~d~~v~~~~~~~~vniGN~HTlaa~v~~~rI~ 190 (254)
T PF08735_consen 139 GAGYDE-VVMDTGPAAVLGALCDPEVSSREGIIVVNIGNGHTLAALVKDGRIY 190 (254)
T ss_pred cCCCCc-eEecCHHHHHhhhhcChhhhccCCeEEEEeCCccEEEEEEeCCEEE
Confidence 334444 88888888888764 3578999999999999999999886
No 74
>PRK13317 pantothenate kinase; Provisional
Probab=43.61 E-value=10 Score=38.51 Aligned_cols=72 Identities=19% Similarity=0.116 Sum_probs=44.4
Q ss_pred CHHHHHHHHHhcCCChHHHHHhhhCeEEEc-CCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCccceEeceeee
Q 009546 409 GLAEAVTSSILSTGRIDLQRKLFCSIQLIG-GVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVL 487 (532)
Q Consensus 409 gL~e~I~~sI~~~~~~d~r~~L~~NIvL~G-G~S~i~Gf~eRL~~EL~~~~p~~~~~~~V~v~~~~~~~~~~aW~GgSIl 487 (532)
+|..+|.+.|....-.-.|..-.++|+++| |.+..|++.++|.+.+... .. ++.++ .+++|..=+||+++
T Consensus 201 sl~~~v~~~I~~lA~~~ar~~~~~~Ivf~G~gla~n~~l~~~l~~~l~~~-----~~-~~~~p---~~~~~~gAlGAaL~ 271 (277)
T PRK13317 201 GVIGLVGEVITTLSIQAAREKNIENIVYIGSTLTNNPLLQEIIESYTKLR-----NC-TPIFL---ENGGYSGAIGALLL 271 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEEECcccccCHHHHHHHHHHHhcC-----Cc-eEEec---CCCchhHHHHHHHH
Confidence 455555554433200012333347999999 6899999999999876521 01 33443 46788888888876
Q ss_pred ec
Q 009546 488 GI 489 (532)
Q Consensus 488 as 489 (532)
+.
T Consensus 272 a~ 273 (277)
T PRK13317 272 AT 273 (277)
T ss_pred hh
Confidence 64
No 75
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=42.17 E-value=72 Score=33.11 Aligned_cols=107 Identities=19% Similarity=0.150 Sum_probs=67.0
Q ss_pred CHHHHHHHHHHHhhhhcCCCCCCCCccceEEecCCCCChHHHHHHHHHHHHhcC---CCEEEEeehhhHhhhhcCC----
Q 009546 149 VLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLR---FASAVVHQEGLAAVFGNGL---- 221 (532)
Q Consensus 149 dwd~le~iw~~i~~~~L~i~~~e~~~~~~Vlv~e~~~~~~~~rkl~eilFE~~~---~psv~~~~~avlalya~G~---- 221 (532)
+-++++.+...-+ ...++.|+.-. ..+|+++-..-.++-.+..+..|-...| +...--.-+++.|--|+|.
T Consensus 63 d~~alk~~v~eeY-~~AGi~pesi~-sGAvIITGEtArk~NA~~vl~alSg~aGDFVVAtAGPdLESiIAGkGaGA~t~S 140 (473)
T COG4819 63 DEAALKKLVLEEY-QAAGIAPESID-SGAVIITGETARKRNARPVLMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLS 140 (473)
T ss_pred cHHHHHHHHHHHH-HHcCCChhccc-cccEEEeccccccccchHHHHHhhhcccceEEEecCCCHHHHhccCCccccchh
Confidence 5677888877766 56788886532 2368887665544333334433333222 2222223355666556652
Q ss_pred ---ce-EEEEeeCCCcEEEEEeeCCeeccCCcEEecchHHHH
Q 009546 222 ---ST-ACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDI 259 (532)
Q Consensus 222 ---~t-glVVDiG~~~T~VvpV~dG~vl~~s~~~~~~GG~~l 259 (532)
.| -+=+|||.++|...-...|.++..++ +++||+.|
T Consensus 141 eqr~t~v~NlDIGGGTtN~slFD~Gkv~dTaC--LdiGGRLi 180 (473)
T COG4819 141 EQRLTRVLNLDIGGGTTNYSLFDAGKVSDTAC--LDIGGRLI 180 (473)
T ss_pred hhhceEEEEEeccCCccceeeeccccccccee--eecCcEEE
Confidence 33 34579999999999999999987665 89999854
No 76
>PRK10854 exopolyphosphatase; Provisional
Probab=38.35 E-value=31 Score=38.17 Aligned_cols=67 Identities=12% Similarity=0.178 Sum_probs=44.1
Q ss_pred HHHHHHHHhcCCCEEEEee---hhhHhhhhcC-----CceEEEEeeCCCcEEEEEeeCCeeccCCcEEecchHHHHHH
Q 009546 192 EMLSIVLRDLRFASAVVHQ---EGLAAVFGNG-----LSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISR 261 (532)
Q Consensus 192 kl~eilFE~~~~psv~~~~---~avlalya~G-----~~tglVVDiG~~~T~VvpV~dG~vl~~s~~~~~~GG~~lt~ 261 (532)
++++-+.+..|++ |-++. ++-++..|.- ...++|||||.++|.++-+-+|.+.. ...+++|.-.+++
T Consensus 100 ~fl~~i~~~tGl~-i~vIsG~EEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~~~~~~~--~~S~~lG~vrl~e 174 (513)
T PRK10854 100 DFLKRAEKVIPYP-IEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEPIL--VESRRMGCVSFAQ 174 (513)
T ss_pred HHHHHHHHHHCCC-eEEeCHHHHHHHHHhhhhcccCCCCCeEEEEeCCCeEEEEEecCCCeeE--eEEEecceeeHHh
Confidence 4677777777876 44444 3333333221 13589999999999999999986553 3345777766665
No 77
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=35.56 E-value=1e+02 Score=31.00 Aligned_cols=40 Identities=30% Similarity=0.363 Sum_probs=32.8
Q ss_pred EEEeehhhHhhhhcCC----ceEEEEeeCCCcEEEEEeeCCeec
Q 009546 206 AVVHQEGLAAVFGNGL----STACVVNMGAQVTSVICVEDGVAL 245 (532)
Q Consensus 206 v~~~~~avlalya~G~----~tglVVDiG~~~T~VvpV~dG~vl 245 (532)
+++..+-+++.+++-. .-++|||+|.+.|+..-|.++++.
T Consensus 207 av~mDskfaav~gal~dpaa~palvVd~GngHttaalvdedRI~ 250 (342)
T COG4012 207 AVAMDSKFAAVMGALVDPAADPALVVDYGNGHTTAALVDEDRIV 250 (342)
T ss_pred EEEEcchhHhhhhcccCcccCceEEEEccCCceEEEEecCCeEE
Confidence 5677777888877654 468999999999999999998764
No 78
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=33.33 E-value=23 Score=37.32 Aligned_cols=26 Identities=23% Similarity=0.186 Sum_probs=20.5
Q ss_pred hhCeEEEcCCCCcCChHHHHHHHHhh
Q 009546 431 FCSIQLIGGVALTGGLIPAVEERVLH 456 (532)
Q Consensus 431 ~~NIvL~GG~S~i~Gf~eRL~~EL~~ 456 (532)
...|+|+||++.=+-|-+||++.+..
T Consensus 285 ~~~v~v~GGGa~N~~L~~~L~~~l~~ 310 (364)
T PF03702_consen 285 PDEVYVCGGGARNPFLMERLQERLPG 310 (364)
T ss_dssp -EEEEEESGGGG-HHHHHHHHHH-TT
T ss_pred CceEEEECCCcCCHHHHHHHHhhCCC
Confidence 45799999999999999999988753
No 79
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=32.36 E-value=15 Score=38.61 Aligned_cols=44 Identities=30% Similarity=0.350 Sum_probs=35.5
Q ss_pred eEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCccceEeceeeeec
Q 009546 434 IQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGI 489 (532)
Q Consensus 434 IvL~GG~S~i~Gf~eRL~~EL~~~~p~~~~~~~V~v~~~~~~~~~~aW~GgSIlas 489 (532)
|+++||+++..|+..-|++.+.. +|.+. .++++..=+||+++|+
T Consensus 346 iv~~GGva~n~av~~ale~~lg~---------~V~vP---~~~ql~GAiGAAL~a~ 389 (396)
T COG1924 346 IVLQGGVALNKAVVRALEDLLGR---------KVIVP---PYAQLMGAIGAALIAK 389 (396)
T ss_pred EEEECcchhhHHHHHHHHHHhCC---------eeecC---CccchhhHHHHHHHHh
Confidence 99999999999999999988862 34443 4677888888888875
No 80
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=31.05 E-value=1.5e+02 Score=31.66 Aligned_cols=104 Identities=16% Similarity=0.127 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHHhhhhcCCCCCCCCccceEEecCCCCChHHHHHHHHHHHHhcCCCEE----EEeehhhHhhhhcCCceE
Q 009546 149 VLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASA----VVHQEGLAAVFGNGLSTA 224 (532)
Q Consensus 149 dwd~le~iw~~i~~~~L~i~~~e~~~~~~Vlv~e~~~~~~~~rkl~eilFE~~~~psv----~~~~~avlalya~G~~tg 224 (532)
.-+..+.+++.++ +..+++..+.. .+.+| -+- |.++..+| +.+.+ ..+-.+...++..-....
T Consensus 177 ~~~~a~~~l~~~l-~~~Gl~~~di~---~i~~T--GyG----R~~i~~~~---~ad~iv~EItaha~GA~~L~p~~~~v~ 243 (404)
T TIGR03286 177 VIESAEEAVERAL-EEAGVSLEDVE---AIGTT--GYG----RFTIGEHF---GADLIQEELTVNSKGAVYLADKQEGPA 243 (404)
T ss_pred HHHHHHHHHHHHH-HHcCCCcccee---EEEee--eec----HHHHhhhc---CCCceEEEEhhHHHHHHHhcccCCCCc
Confidence 3467788888887 56776554431 23333 222 23222222 22222 111111112222112468
Q ss_pred EEEeeCCCcEEEEEeeCCeeccCCcEEecc--hHHHHHHHHHH
Q 009546 225 CVVNMGAQVTSVICVEDGVALPNTEKTLPF--GGEDISRCLLW 265 (532)
Q Consensus 225 lVVDiG~~~T~VvpV~dG~vl~~s~~~~~~--GG~~lt~~L~~ 265 (532)
.|+|||.+-+.++-+.+|.+..-.+--..- +|++|...-..
T Consensus 244 TIIDIGGQDsK~I~l~~G~v~dF~MNdkCAAGTGrFLE~~A~~ 286 (404)
T TIGR03286 244 TVIDIGGMDNKAISVWDGIPDNFTMGGICAGASGRFLEMTAKR 286 (404)
T ss_pred EEEEeCCCceEEEEEcCCceeeEEEcCcccccCcHHHHHHHHH
Confidence 999999999999999888765322212223 46777766543
No 81
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=30.89 E-value=66 Score=36.85 Aligned_cols=31 Identities=35% Similarity=0.472 Sum_probs=25.5
Q ss_pred hhhhcCCce--EEEEeeCCCcEEEEEeeCCeec
Q 009546 215 AVFGNGLST--ACVVNMGAQVTSVICVEDGVAL 245 (532)
Q Consensus 215 alya~G~~t--glVVDiG~~~T~VvpV~dG~vl 245 (532)
|+|=+|+.. ++++|+|..+|.|.-+.+|.+.
T Consensus 269 Aa~ltg~~~g~~i~~DmGGTStDva~i~~G~pe 301 (674)
T COG0145 269 AAYLTGLKAGNAIVFDMGGTSTDVALIIDGEPE 301 (674)
T ss_pred HHHhcccccCCEEEEEcCCcceeeeeeecCcEE
Confidence 445457767 9999999999999999988765
No 82
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=22.89 E-value=6.4 Score=39.35 Aligned_cols=66 Identities=23% Similarity=0.346 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCChHHHHHhhhCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCccceEeceeeee
Q 009546 410 LAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLG 488 (532)
Q Consensus 410 L~e~I~~sI~~~~~~d~r~~L~~NIvL~GG~S~i~Gf~eRL~~EL~~~~p~~~~~~~V~v~~~~~~~~~~aW~GgSIla 488 (532)
|.+.|...+.+. ...... |+|+||...-..+.+.|.+.|.+.++.. .+.++ ..|.+.+..||.+||
T Consensus 206 la~~i~~~~~~~-~~~~~~-----v~l~GGv~~~~~~~~~l~~~l~~~~~~~----~~~~~---~~~~~~~a~GAallA 271 (271)
T PF01869_consen 206 LAELIKAVLKRL-GPEKEP-----VVLSGGVFKNSPLVKALRDALKEKLPKV----PIIIP---VEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHTC-TCCCCS-----EEEESGGGGCHHHHHHHGGGS-HHHHCC----TCECE---CCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-CCCCCe-----EEEECCccCchHHHHHHHHHHHHhcCCC----ceEEC---CCCCccHHHHHHHhC
No 83
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=21.60 E-value=43 Score=32.64 Aligned_cols=82 Identities=17% Similarity=0.337 Sum_probs=46.0
Q ss_pred HHHHHhhhCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCccceEeceeeeecccCcc--ceeEeH--
Q 009546 425 DLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGR--DAWIHR-- 500 (532)
Q Consensus 425 d~r~~L~~NIvL~GG~S~i~Gf~eRL~~EL~~~~p~~~~~~~V~v~~~~~~~~~~aW~GgSIlasL~~f~--~~wITr-- 500 (532)
|+-+---+.|+++|.+| .||..- .++....| .+ +|.++...-.|-=.+|+||.+++.+-.-+ +++...
T Consensus 70 DldkyAesDvviVGAGS--aGLsAA--Y~I~~~rP---dl-kvaIIE~SVaPGGGaWLGGQLFSAMvvRKPAhLFL~Eig 141 (328)
T KOG2960|consen 70 DLDKYAESDVVIVGAGS--AGLSAA--YVIAKNRP---DL-KVAIIESSVAPGGGAWLGGQLFSAMVVRKPAHLFLQEIG 141 (328)
T ss_pred HHHhhhccceEEECCCc--ccccee--eeeeccCC---Cc-eEEEEEeeecCCCcccccchhhhhhhhcChHHHHHHHhC
Confidence 44444556799999887 244321 11221222 22 67777655567778999999998774322 111110
Q ss_pred HHHHHcCcceeeec
Q 009546 501 EDWIRNGIHIGSGR 514 (532)
Q Consensus 501 ~eYeE~G~~i~~rk 514 (532)
--|++.|.-++-++
T Consensus 142 vpYedegdYVVVKH 155 (328)
T KOG2960|consen 142 VPYEDEGDYVVVKH 155 (328)
T ss_pred CCcccCCCEEEEee
Confidence 13777777665543
No 84
>TIGR03367 queuosine_QueD queuosine biosynthesis protein QueD. Members of this protein family, closely related to eukaryotic 6-pyruvoyl tetrahydrobiopterin synthase enzymes, are the QueD protein of queuosine biosynthesis. Queuosine is a hypermodified base in the wobble position of tRNAs for Tyr, His, Asp, and Asn in many species. This modification, although widespread, appears not to be important for viability. The queuosine precursor made by this enzyme may be converted instead to archeaosine as in some Archaea.
Probab=21.47 E-value=1.9e+02 Score=23.88 Aligned_cols=50 Identities=18% Similarity=0.296 Sum_probs=32.0
Q ss_pred eCCeeeecCCCCcccCHHHHHHHHHHHhhhhcCCCCCCCCccceEEecCCCCChHHHHHHHHHHHHhcC
Q 009546 134 RRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLR 202 (532)
Q Consensus 134 ~~G~i~~~~~~~~q~dwd~le~iw~~i~~~~L~i~~~e~~~~~~Vlv~e~~~~~~~~rkl~eilFE~~~ 202 (532)
..|++. |+..++.+++.+. +.| ++. .|.--+.+.+...+.|+..+|+.+.
T Consensus 42 ~~g~v~---------Df~~lk~~~~~i~-~~l-----Dh~----~Lne~~~~~~pT~E~ia~~i~~~l~ 91 (92)
T TIGR03367 42 EAGMVM---------DFSDLKAIVKEVV-DRL-----DHA----LLNDVPGLENPTAENLARWIYDRLK 91 (92)
T ss_pred CccEEE---------EHHHHHHHHHHHH-HhC-----CCc----EeeCCCCCCCCCHHHHHHHHHHHHh
Confidence 368888 9999999999876 444 442 3432233433333468999888753
Done!