Query 009546
Match_columns 532
No_of_seqs 244 out of 1544
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 07:38:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009546.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009546hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fo0_A Actin-related protein 8 100.0 2.5E-79 8.7E-84 678.7 18.7 489 18-516 20-590 (593)
2 4am6_A Actin-like protein ARP8 100.0 3.5E-70 1.2E-74 591.2 18.5 481 21-516 48-652 (655)
3 3qb0_A Actin-related protein 4 100.0 1.6E-69 5.4E-74 581.8 19.1 411 17-515 27-497 (498)
4 3dwl_A Actin-related protein 3 100.0 2.9E-69 9.9E-74 573.6 15.9 387 18-516 10-422 (427)
5 1k8k_B ARP2, actin-like protei 100.0 1.3E-61 4.5E-66 511.3 13.5 362 17-513 10-388 (394)
6 2fxu_A Alpha-actin-1, actin, a 100.0 1.7E-60 6E-65 499.5 21.5 363 17-516 9-375 (375)
7 1k8k_A ARP3, actin-like protei 100.0 1.9E-57 6.5E-62 482.9 19.3 377 17-518 9-416 (418)
8 1jce_A ROD shape-determining p 99.9 9.4E-25 3.2E-29 225.3 19.0 276 110-494 40-330 (344)
9 3h1q_A Ethanolamine utilizatio 99.7 8.6E-18 2.9E-22 167.2 10.0 214 130-488 59-272 (272)
10 2v7y_A Chaperone protein DNAK; 99.5 9.8E-15 3.4E-19 158.4 6.2 224 177-490 111-350 (509)
11 1dkg_D Molecular chaperone DNA 99.5 3.9E-14 1.3E-18 147.8 8.8 223 178-490 138-381 (383)
12 3qfu_A 78 kDa glucose-regulate 99.4 2.9E-14 1E-18 149.0 1.3 90 178-268 156-255 (394)
13 3i33_A Heat shock-related 70 k 99.3 2.8E-13 9.5E-18 142.3 1.7 90 178-268 161-263 (404)
14 2ych_A Competence protein PILM 99.1 1.6E-09 5.4E-14 112.5 15.6 89 195-301 157-252 (377)
15 1yuw_A Heat shock cognate 71 k 98.9 2.4E-09 8.4E-14 117.1 12.0 90 178-268 143-242 (554)
16 2kho_A Heat shock protein 70; 98.9 2.2E-09 7.5E-14 118.6 7.5 92 177-269 138-242 (605)
17 3d2f_A Heat shock protein homo 98.9 8.6E-09 3E-13 115.1 12.2 91 177-268 141-246 (675)
18 4gni_A Putative heat shock pro 98.7 1.8E-08 6.1E-13 105.8 8.9 92 177-269 153-255 (409)
19 4a2a_A Cell division protein F 98.7 3E-08 1E-12 104.7 10.5 91 192-300 171-266 (419)
20 4b9q_A Chaperone protein DNAK; 98.5 1.1E-06 3.8E-11 96.9 14.1 92 177-269 138-242 (605)
21 2fsj_A Hypothetical protein TA 98.4 9.8E-07 3.4E-11 90.7 10.2 138 109-270 77-240 (346)
22 2d0o_A DIOL dehydratase-reacti 97.6 0.00062 2.1E-08 72.5 13.7 92 191-300 371-467 (610)
23 1nbw_A Glycerol dehydratase re 97.5 0.00058 2E-08 72.9 12.8 73 210-300 392-469 (607)
24 3js6_A Uncharacterized PARM pr 97.2 0.00065 2.2E-08 69.8 7.7 68 203-270 154-232 (355)
25 2zgy_A Plasmid segregation pro 97.0 0.00063 2.1E-08 68.7 6.1 72 199-270 136-213 (320)
26 4apw_A ALP12; actin-like prote 96.8 0.0015 5.2E-08 66.3 6.3 67 203-269 149-219 (329)
27 3cet_A Conserved archaeal prot 84.2 0.71 2.4E-05 46.4 4.0 25 222-246 127-151 (334)
28 1t6c_A Exopolyphosphatase; alp 83.4 1.6 5.6E-05 43.5 6.4 69 192-263 101-177 (315)
29 4ehu_A Activator of 2-hydroxyi 79.8 0.31 1.1E-05 47.4 -0.5 66 409-489 188-253 (276)
30 3mdq_A Exopolyphosphatase; str 77.7 2.5 8.5E-05 42.1 5.4 69 192-263 93-170 (315)
31 3cer_A Possible exopolyphospha 76.9 2 6.9E-05 43.4 4.6 71 192-263 106-191 (343)
32 1u6z_A Exopolyphosphatase; alp 69.3 6.6 0.00023 41.8 6.6 69 192-263 100-176 (513)
33 3hi0_A Putative exopolyphospha 64.4 11 0.00036 40.2 6.9 68 192-262 104-178 (508)
34 3aap_A Ectonucleoside triphosp 54.1 10 0.00036 38.3 4.4 35 222-256 140-176 (353)
35 2ews_A Pantothenate kinase; PA 45.1 3.4 0.00012 40.6 -0.9 49 431-488 237-286 (287)
36 2i7n_A Pantothenate kinase 1; 37.5 11 0.00039 38.1 1.6 73 409-487 284-357 (360)
37 2fsj_A Hypothetical protein TA 34.4 5.3 0.00018 40.1 -1.5 47 430-488 296-342 (346)
38 2gup_A ROK family protein; sug 32.8 76 0.0026 30.2 6.7 52 193-247 87-143 (292)
39 3js6_A Uncharacterized PARM pr 32.0 4 0.00014 41.3 -2.9 45 429-489 289-335 (355)
40 4apw_A ALP12; actin-like prote 30.6 16 0.00055 36.3 1.3 45 430-488 278-322 (329)
41 2qm1_A Glucokinase; alpha-beta 25.9 1.5E+02 0.0051 28.5 7.6 49 197-247 104-159 (326)
42 1hux_A Activator of (R)-2-hydr 24.3 8.8 0.0003 37.1 -1.9 54 432-497 210-263 (270)
43 2aa4_A Mannac kinase, putative 22.1 2.1E+02 0.0074 26.8 7.8 52 193-247 88-146 (289)
44 3vgl_A Glucokinase; ROK family 21.1 2.1E+02 0.0071 27.6 7.5 53 193-247 88-147 (321)
45 3djc_A Type III pantothenate k 20.8 1.4E+02 0.0049 28.5 6.1 48 224-271 4-52 (266)
46 3cj1_A Ectonucleoside triphosp 20.5 77 0.0026 33.0 4.3 22 222-243 190-211 (456)
No 1
>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.5e-79 Score=678.66 Aligned_cols=489 Identities=27% Similarity=0.455 Sum_probs=353.4
Q ss_pred HHHHhhhhcCccCCccccCCCCCccccccccccccCcc------------------------ccccccccccc-ccCCCC
Q 009546 18 YDVIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSR------------------------KDVAFSWTNVY-EKEPMP 72 (532)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~-~~~~~~ 72 (532)
.|-++..+||||++++.| ..+|..|||.---.....- ....-.|+..+ ...+..
T Consensus 20 IdpGS~~~riG~A~d~~P-~~iP~~iar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 98 (593)
T 4fo0_A 20 IHPGSTTLRIGRATDTLP-ASIPHVIARRHKQQGQPLYKDSWLLREGLNKPESNEQRQNGLKMVDQAIWSKKMSNGTRRI 98 (593)
T ss_dssp EECCSSEEEEEETTCSSC-EEEECCEEEECSSTTCCCCBCCSSCCTTTTSTTHHHHHHHHHHHHHHHHHHSCCTTSCCCC
T ss_pred EeCCCCCeEeeecCCCCC-CeeeEEEEEECCCCCCCcccccccccccccccchhhhhhhhHHHHHHHHHHHhhhcccccC
Confidence 477899999999999999 4689999995311000000 00112355555 355678
Q ss_pred CcccccccCCCCCCcccccCCCCCCCccccccccccCcceEEccccccCCCCCCceEecceeCCeeeec-CCC-CcccCH
Q 009546 73 STALESSSSMNHGIIKESMGQHRNTDIKELNSSERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNIS-QHY-PMQQVL 150 (532)
Q Consensus 73 ~~~~e~~~~~n~~~~p~~i~~h~~~~~~~~~~~~~~~~~~~vG~ea~~~~~~~~~~l~~Pi~~G~i~~~-~~~-~~q~dw 150 (532)
++|.|.+++||++..|+.|++|+++ +|.+. ...+++|||++|+.+.+.+.|.|+|||+||.+++. .+| +++.+|
T Consensus 99 ~~s~~~~~~~n~~~~p~~i~~~~~~---~~~~~-~~~~~~~vG~~al~~~~~~~~~l~~Pi~~G~~n~~~~~~~s~~~~w 174 (593)
T 4fo0_A 99 PVSPEQARSYNKQMRPAILDHCSGN---KWTNT-SHHPEYLVGEEALYVNPLDCYNIHWPIRRGQLNIHPGPGGSLTAVL 174 (593)
T ss_dssp CCCHHHHHHHHTTCCCEEEESSCSC---CCCCC-TTCCSEEETHHHHTSCTTSSEEEECSEETTEECCCSSTTCSHHHHH
T ss_pred CCcHHHhhhhhccCCCcccCCCCcc---ccccc-cccccccccHHHhhcCCcccceEecCcccCccccccCCccchhcCH
Confidence 9999999999999999999998775 47553 25678999999999887889999999999999984 344 889999
Q ss_pred HHHHHHHHHHhhhhcCCCCCCCCccceEEecCCCCChHHHH-HHHHHHHHhcCCCEEEEeehhhHhhhhcCCceEEEEee
Q 009546 151 EDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIK-EMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNM 229 (532)
Q Consensus 151 d~le~iw~~i~~~~L~i~~~e~~~~~~Vlv~e~~~~~~~~r-kl~eilFE~~~~psv~~~~~avlalya~G~~tglVVDi 229 (532)
++||.||+|+|+++|++++++.+.+ +||+++++++++..| +|+|+|||+|+||+++++++++||+||+|++|||||||
T Consensus 175 dd~e~iw~~~~~~~L~i~~~d~~~~-pvlltep~~~~~~~re~~~eilFE~f~~pa~~~~~~~vla~ya~G~~tglVVDi 253 (593)
T 4fo0_A 175 ADIEVIWSHAIQKYLEIPLKDLKYY-RCILLIPDIYNKQHVKELVNMILMKMGFSGIVVHQESVCATYGSGLSSTCIVDV 253 (593)
T ss_dssp HHHHHHHHHHHHHTSCCCGGGGGGC-EEEEEECSSCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHHTCSEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCchhccCC-cEEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEeechHHHHHHHCCCCceEEEEe
Confidence 9999999999999999998874322 799999988877776 59999999999999999999999999999999999999
Q ss_pred CCCcEEEEEeeCCeeccCCcEEecchHHHHHHHHHHHHHhcCCCCCcccccccccchHHHHHHHHHHceeccCCccchhh
Q 009546 230 GAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVA 309 (532)
Q Consensus 230 G~~~T~VvpV~dG~vl~~s~~~~~~GG~~lt~~L~~lL~~~~~~p~~~~~~l~~~~d~~~~~~iKe~~c~v~~~e~~~~~ 309 (532)
|++.|+|+||+||+++.++++++++||++||++|.++|+.++. ++...++....+++++++|||++|||+.+.....
T Consensus 254 G~~~T~v~PV~dG~~l~~~~~rl~~GG~~lt~~L~~lL~~~~~--~~~~~~~~~~~d~~~v~~iKe~~c~v~~d~~~~~- 330 (593)
T 4fo0_A 254 GDQKTSVCCVEDGVSHRNTRLCLAYGGSDVSRCFYWLMQRAGF--PYRECQLTNKMDCLLLQHLKETFCHLDQDISGLQ- 330 (593)
T ss_dssp CSSCEEEEEEESSCBCGGGCEEESCCHHHHHHHHHHHHHHTTC--SCTTCCTTCHHHHHHHHHHHHHHCBCCTTCCSCE-
T ss_pred CCCceeeeeeECCEEehhheEEecccHHHHHHHHHHHHHhcCC--CccccccccchhHHHHHHHHHHhcccccchHHhh-
Confidence 9999999999999999999999999999999999999998762 3444456667899999999999999997532211
Q ss_pred hhccccCCCCCCC-ceeee---eeccCCCCCCCCCcccCCCCCCCCCCC--CCCCc------------------------
Q 009546 310 VVHSYEDGMPPGS-HKTRL---IALNVPPMGLFYPKLLVPDVYPPPPRS--WFNDY------------------------ 359 (532)
Q Consensus 310 ~~~~y~~~~p~~~-~k~~~---~~~~~~P~~lf~p~~~~~e~~~~p~~~--~~~d~------------------------ 359 (532)
. ..+....|++. .++.+ .+...+|+++|+|.++..+........ ...+.
T Consensus 331 ~-~~~~~~~p~~~~~~~~~~~~~E~~~~p~~lf~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (593)
T 4fo0_A 331 D-HEFQIRHPDSPALLYQFRLGDEKLQAPMALFYPATFGIVGQKMTTLQHRSQGDPEDPHDEHYLLATQSKQEQSAKATA 409 (593)
T ss_dssp E-EEEEECCTTSCEEEEEEEECTHHHHHHHTTTSGGGGCCCSSCCEEECC------------------------------
T ss_pred h-hhhhcccCCCCceeeEEeccchhhcCchhhcChhhhcccccccchhhhhcccCcccchhhhhhhhcccchhhhhhccc
Confidence 1 11222245543 22322 245678999999987753211000000 00000
Q ss_pred ---cccccCCccccCC-CCCCCCCCCC-CCCCCCCCCCC-------CCCcc--------CCCCCcccCCCHHHHHHHHHh
Q 009546 360 ---EDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWE-------SYPVL--------TTKPKKEEKIGLAEAVTSSIL 419 (532)
Q Consensus 360 ---ed~l~d~~~~~~~-eR~~~~E~LF-p~~~g~~~~~~-------~~~~~--------~~~~~~~~~~gL~e~I~~sI~ 419 (532)
.-.++++..+.++ +|+.++|.|| |....+..... ..... +......+..||+++|.+||.
T Consensus 410 ~~~~~~~p~g~~~~~~~e~~~~pe~lf~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gL~~aI~~SI~ 489 (593)
T 4fo0_A 410 DRKSASKPIGFEGDLRGQSSDLPERLHSQEVDLGSAQGDGLMAGNDSEEALTALMSRKTAISLFEGKALGLDKAILHSID 489 (593)
T ss_dssp -------------------------------------------------------------CHHHHSCCCHHHHHHHHHH
T ss_pred ccccccCCCCcccccccccccCchhccCcccccccccccccccccccccccccccccccccccccccCCCHHHHHHHHHH
Confidence 0123344444453 7999999999 54321110000 00000 000011245799999999999
Q ss_pred cCCChHHHHHhhhCeEEEcCCCCcCChHHHHHHHHhhhCCCCCC--cceEEEcCCC--CCCccceEeceeeeecccCccc
Q 009546 420 STGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEA--IDMVEVLQSR--TNPTYVSWKGGAVLGILDFGRD 495 (532)
Q Consensus 420 ~~~~~d~r~~L~~NIvL~GG~S~i~Gf~eRL~~EL~~~~p~~~~--~~~V~v~~~~--~~~~~~aW~GgSIlasL~~f~~ 495 (532)
+|+++|+|++||+||||+||+|++|||.+||++||..++|...+ +.+|+|++.+ .+|++++|+||||||+|++|++
T Consensus 490 ~~~~~D~r~~L~~NIvltGG~s~~pGf~~RL~~eL~~~~p~~~~~~~~~v~v~~~p~~~d~~~~aW~GgSilasL~~f~~ 569 (593)
T 4fo0_A 490 CCSSDDTKKKMYSSILVVGGGLMFHKAQEFLQHRILNKMPPSFRRIIENVDVITRPKDMDPRLIAWKGGAVLACLDTTQE 569 (593)
T ss_dssp TCSSHHHHHHHHHEEEEESSTTCCBTHHHHHHHHHHHHSCHHHHHHSSCCEEESSGGGCCTTTHHHHHHHHHHHCGGGGG
T ss_pred hCCcHHHHHHHhCCEEEEchhhchhcHHHHHHHHHHHhCcchhccccceEEEECCCCCCCCceeeehhhHHHhcCccHHH
Confidence 99337999999999999999999999999999999999986532 2356777643 5899999999999999999999
Q ss_pred eeEeHHHHHHcCcceeeeccC
Q 009546 496 AWIHREDWIRNGIHIGSGRKY 516 (532)
Q Consensus 496 ~wITr~eYeE~G~~i~~rk~~ 516 (532)
+||||+||+|+|++||+|||.
T Consensus 570 ~wItk~EYeE~G~~il~~kc~ 590 (593)
T 4fo0_A 570 LWIYQREWQRFGVRMLRERAA 590 (593)
T ss_dssp TCEEHHHHHHHTTHHHHHHCS
T ss_pred eeECHHHHHhhCcHHHhhcCC
Confidence 999999999999999999995
No 2
>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A*
Probab=100.00 E-value=3.5e-70 Score=591.19 Aligned_cols=481 Identities=20% Similarity=0.360 Sum_probs=349.5
Q ss_pred HhhhhcCccCCccccCCCCCccccccc--cccc--cC---c--ccccccccc-----------ccc--ccCCCCCccccc
Q 009546 21 IASLMKIPFLDEEVANNSFPRKMGRVD--AFNQ--QN---S--RKDVAFSWT-----------NVY--EKEPMPSTALES 78 (532)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~---~--~~~~~~~~~-----------~~~--~~~~~~~~~~e~ 78 (532)
++.-|+|||+....| ...|-.++|.. ...+ .+ . +.+..=.|. ..| -+.+-.++|.|+
T Consensus 48 GS~~lRIG~AsD~~P-~~ip~~iA~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~k~rmr~~k~r~~pn~~e~ 126 (655)
T 4am6_A 48 GSNSIKIGFPKDDHP-VVVPNCVAVPKKWLDLENSEHVENVCLQREQSEEFNNIKSEMEKNFRERMRYYKRKVPGNAHEQ 126 (655)
T ss_dssp CSSEEEEECTTSSSC-EEEESCEEEEGGGSCCSSSCCCCTTCCCSCCCHHHHHHHHHHHHHHHHHHHHHSCCCSTTCCSS
T ss_pred CCcceeeeecCCCCC-cccceeEEeccccccCCCccccCccccchhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHH
Confidence 467799999977677 78899999831 0000 00 0 111111222 233 244578999999
Q ss_pred ccCCCCCCcccccCCCCCCCccccccccccCcceEEccccccCCCCCCceEecceeCCeeeec-CCC-CcccCHHHHHHH
Q 009546 79 SSSMNHGIIKESMGQHRNTDIKELNSSERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNIS-QHY-PMQQVLEDLYAI 156 (532)
Q Consensus 79 ~~~~n~~~~p~~i~~h~~~~~~~~~~~~~~~~~~~vG~ea~~~~~~~~~~l~~Pi~~G~i~~~-~~~-~~q~dwd~le~i 156 (532)
++|||++..||+||+||||++++|.+. .+++|||++|+.+. ++.+.++|||++|+|+.+ .+| |+|.+||++|.|
T Consensus 127 ~~~fN~~~~Pe~i~~~nDp~~~~W~~~---~~d~~VGdEA~~~~-r~~l~l~~PI~~GvI~~~s~Dy~s~q~~WD~mE~I 202 (655)
T 4am6_A 127 VVSFNENSKPEIISEKNDPSPIEWIFD---DSKLYYGSDALRCV-DEKFVIRKPFRGGSFNVKSPYYKSLAELISDVTKL 202 (655)
T ss_dssp TTCCEEEECSCCCCSSSSCCSCCCBCC---TTSCEEHHHHHTBC-TTTEEEECSEETTEECTTCSSCSSHHHHHHHHHHH
T ss_pred HHHhcCCCCCeECCCCCCccccccccC---CCCEEEehHHhhCC-ccCeEEeccccCCEecccCCccccccccHHHHHHH
Confidence 999999999999999999999999864 36899999999864 478999999999999742 356 778889999999
Q ss_pred HHHHhhh-hcCCCCC---CCCccceEEecCCCCChHHHHH-HHHHHHHhcCCCEEEEeehhhHhhhhcC-CceEEEEeeC
Q 009546 157 WDWILTE-KLHIPRS---ERNLYSAILVLPESFDNREIKE-MLSIVLRDLRFASAVVHQEGLAAVFGNG-LSTACVVNMG 230 (532)
Q Consensus 157 w~~i~~~-~L~i~~~---e~~~~~~Vlv~e~~~~~~~~rk-l~eilFE~~~~psv~~~~~avlalya~G-~~tglVVDiG 230 (532)
|+|+|++ +|+++|+ ++ +|||++++++++..|+ |+|+|||.|+||+++++++++||+||+| .++|||||+|
T Consensus 203 w~y~f~~~~L~V~p~~~~e~----pVLLTEPplnp~~~REkm~EIlFE~fgvpavyl~~qavlAlyasGl~ttGLVVDiG 278 (655)
T 4am6_A 203 LEHALNSETLNVKPTKFNQY----KVVLVIPDIFKKSHVETFIRVLLTELQFQAVAIIQESLATCYGAGISTSTCVVNIG 278 (655)
T ss_dssp HHHHHBSSSCBCCGGGGGGC----EEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHSCCSSCEEEEEEC
T ss_pred HHHHhccccccccccccCCC----cEEEEeCCCCCHHHHHHHHHHHHhhcCCCeeeeccHHHHHHHhCCCCCceEEEcCC
Confidence 9999973 8999886 56 7999999998888775 9999999999999999999999999999 6999999999
Q ss_pred CCcEEEEEeeCCeeccCCcEEecchHHHHHHHHHHHHHhcCCCCCcccccccccchHHHHHHHHHHceeccCCccchhhh
Q 009546 231 AQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAV 310 (532)
Q Consensus 231 ~~~T~VvpV~dG~vl~~s~~~~~~GG~~lt~~L~~lL~~~~~~p~~~~~~l~~~~d~~~~~~iKe~~c~v~~~e~~~~~~ 310 (532)
+++|+|+||++|+++.++++++++||+++|++|.++|+.++. +++.++|.+..+++++++|||++|||+..+++ .+.
T Consensus 279 ~g~T~VvPV~eG~vl~~ai~rL~iGG~dLT~yL~kLL~~rgy--py~~~~f~t~~e~eiVrdIKEk~CyVs~~Di~-~q~ 355 (655)
T 4am6_A 279 AAETRIACVDEGTVLEHSAITLDYGGDDITRLFALFLLQSDF--PLQDWKIDSKHGWLLAERLKKNFTTFQDADVA-VQL 355 (655)
T ss_dssp SSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHHHHHTTC--SCCSCCTTSHHHHHHHHHHHHHHCCCCGGGCC-SEE
T ss_pred CceEEEEEEeCCEEEhhheeeecchHHHHHHHHHHHHHHcCC--CccccCCCCcchHHHHHHHHHheEEEcccchh-hhh
Confidence 999999999999999999999999999999999999998863 23445677778999999999999999754443 122
Q ss_pred hccccCCCCCC-Cceeee---eeccCCCCCCCCCcccCCCCCCCCC----CCCCCCccccccCCc----cccCCCCCCCC
Q 009546 311 VHSYEDGMPPG-SHKTRL---IALNVPPMGLFYPKLLVPDVYPPPP----RSWFNDYEDMLEDTW----HTDFPRRSDIS 378 (532)
Q Consensus 311 ~~~y~~~~p~~-~~k~~~---~~~~~~P~~lf~p~~~~~e~~~~p~----~~~~~d~ed~l~d~~----~~~~~eR~~~~ 378 (532)
.. +....|.+ +.++.+ .+++.+|++||+|.++..+.-.... +.++.+..|..++.. ..... -...
T Consensus 356 ~~-f~~r~P~~~~~ky~i~vgdErflaPe~lF~Pei~~~~~~~~~~~~~~~~~~~~s~d~y~~~~nd~~S~~q~--~~~~ 432 (655)
T 4am6_A 356 YN-FMNRSPNQPTEKYEFKLFDEVMLAPLALFFPQIFKLIRTSSHKNSSLEFQLPESRDLFTNELNDWNSLSQF--ESKE 432 (655)
T ss_dssp EE-EEECCSSSCEEEEEEEESSHHHHHHHGGGSTHHHHHTSCCCCCCHHHHTTSCCCBCTTTCCBCSCCCHHHH--HHHT
T ss_pred hc-ceeccCCCCCcceEEEECCeehhCchhcCChhhcccccccccccchhhhhcCccccccCCCCCCccchhHH--hhhc
Confidence 22 22224554 234443 3567899999999988644322211 123444333332111 10000 0000
Q ss_pred CCCCCCCCCC--CCC-----------CCCCCccCCCCCcccCCCHHHHHHHHHhcCCC-hHHHH--HhhhCeEEEcCCCC
Q 009546 379 DNFYPGINVG--LPM-----------WESYPVLTTKPKKEEKIGLAEAVTSSILSTGR-IDLQR--KLFCSIQLIGGVAL 442 (532)
Q Consensus 379 E~LFp~~~g~--~~~-----------~~~~~~~~~~~~~~~~~gL~e~I~~sI~~~~~-~d~r~--~L~~NIvL~GG~S~ 442 (532)
...++..... ++. -+..+............+|..+|.+||..++. .|.++ +||+||+++||+|+
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pLdkAIi~SIt~a~~~~d~~k~~~~y~nilivGggsk 512 (655)
T 4am6_A 433 GNLYCDLNDDLKILNRILDAHNIIDQLQDKPENYGNTLKENFAPLEKAIVQSIANASITADVTRMNSFYSNILIVGGSSK 512 (655)
T ss_dssp TCCGGGCCSHHHHHHHHHHHHHHHHHHHTSSCSCSCSSCCCCCCHHHHHHHHHHHHHHTSCGGGHHHHHTCEEEESTTCC
T ss_pred cccCCCCccHhhhhhhhhcccccccccccCCcccccccccccccHHHHHHHHHHhhhccccHHHHHHHhhcEEEEcCccc
Confidence 0011100000 000 00000000001113457999999999994322 35554 99999999999999
Q ss_pred cCChHHHHHHHHhhhCCCCC------------------------------------------------------------
Q 009546 443 TGGLIPAVEERVLHAIPSNE------------------------------------------------------------ 462 (532)
Q Consensus 443 i~Gf~eRL~~EL~~~~p~~~------------------------------------------------------------ 462 (532)
||||...|+++|....|.-.
T Consensus 513 i~g~~~~L~dri~i~rp~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 592 (655)
T 4am6_A 513 IPALDFILTDRINIWRPSLLSSASFPQFYKKLTKEIKDLEGHYVNAPDKTEDENKQILQAQIKEKIVEELEEQHQNIEHQ 592 (655)
T ss_dssp CTTHHHHHHHHHHHHSCSTTTBTTHHHHHHHHHHHHHHHHSTTCSCCSSSCCSSTTSTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHhhCcccccccccHHHHHHHHHhhhhhhhhhccccccccccchhhhhhhhhhhhhhhhhhhhhhhhhc
Confidence 99999999999976433211
Q ss_pred ----CcceEEEcCC--CCCCccceEeceeeeecccCccceeEeHHHHHHcCcceeeeccC
Q 009546 463 ----AIDMVEVLQS--RTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKY 516 (532)
Q Consensus 463 ----~~~~V~v~~~--~~~~~~~aW~GgSIlasL~~f~~~wITr~eYeE~G~~i~~rk~~ 516 (532)
.+-+|+|+++ ..+|++++|+||||||+|++|++|||||+||+|+|++|+++||+
T Consensus 593 ~~~~~~~~i~V~~~p~~~d~~~~~W~GgSvla~l~~f~e~wIt~~Eyde~G~~il~~k~~ 652 (655)
T 4am6_A 593 NGNEHIFPVSIIPPPRDMNPALIIWKGASVLAQIKLVEELFITNSDWDVHGSRILQYKCI 652 (655)
T ss_dssp TSCCCBCCCCEECCCTTSCGGGHHHHHHHHHTTSHHHHHHCEEHHHHHHHGGGGGGTSCS
T ss_pred cccCCceeeEEeCCccccCcceeEEecceeeeecccHhheeecHHHHhhhcchheEeccc
Confidence 0113666654 35679999999999999999999999999999999999999984
No 3
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-69 Score=581.77 Aligned_cols=411 Identities=20% Similarity=0.296 Sum_probs=303.7
Q ss_pred HHHHHhhhhcCccCCccccCCCCCccccccccccccCcccccccccccccccCCCCCcccccccCCCCCCcccccCCCCC
Q 009546 17 AYDVIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRKDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRN 96 (532)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~n~~~~p~~i~~h~~ 96 (532)
..|.+++.+|++|.+++.|...||..+||... +
T Consensus 27 VID~GS~~~kaG~ag~~~P~~v~PSvVg~~~~------~----------------------------------------- 59 (498)
T 3qb0_A 27 VIDPGSYTTNIGYSGSDFPQSILPSVYGKYTA------D----------------------------------------- 59 (498)
T ss_dssp EEECCSSEEEEEETTCSSCSEEEESEEEEESS------C-----------------------------------------
T ss_pred EEECCCcEEEEEECCCCCeeeecCceeEEecc------C-----------------------------------------
Confidence 36889999999999999999999999998540 0
Q ss_pred CCccccccccccCcceEEccccccCCCCCCceEecceeCCeeeecCCCCcccCHHHHHHHHHHHhhhhcCCCCCCCCccc
Q 009546 97 TDIKELNSSERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYS 176 (532)
Q Consensus 97 ~~~~~~~~~~~~~~~~~vG~ea~~~~~~~~~~l~~Pi~~G~i~~~~~~~~q~dwd~le~iw~~i~~~~L~i~~~e~~~~~ 176 (532)
..++++||+++.... +..+.+++||++|+|. |||++|.||+|+|++.|++++.++.
T Consensus 60 -----------~~~~~~vG~e~~~~~-r~~l~l~~Pi~~GvI~---------dwd~~E~iw~~~f~~~L~v~p~~~~--- 115 (498)
T 3qb0_A 60 -----------EGNKKIFSEQSIGIP-RKDYELKPIIENGLVI---------DWDTAQEQWQWALQNELYLNSNSGI--- 115 (498)
T ss_dssp -----------SSCCEECCTTGGGSC-CTTEEEEESEETTEES---------CHHHHHHHHHHHHHHTSCCSCCTTC---
T ss_pred -----------CCccEEEecHHHhcC-cCceEEeccCcCCEEc---------cHHHHHHHHHHHHHhhhCCCcccCC---
Confidence 024568999854432 5789999999999999 9999999999999888999998873
Q ss_pred eEEecCCCCChHHHHH-HHHHHHHhcCCCEEEEeehhhHhhhhcCCceEEEEeeCCCcEEEEEeeCCeeccCCcEEecch
Q 009546 177 AILVLPESFDNREIKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFG 255 (532)
Q Consensus 177 ~Vlv~e~~~~~~~~rk-l~eilFE~~~~psv~~~~~avlalya~G~~tglVVDiG~~~T~VvpV~dG~vl~~s~~~~~~G 255 (532)
||||++++++++..|+ ++|++||.|+||+++++.+++||+||+|++||||||+|++.|+|+||++|++++++++++++|
T Consensus 116 pvlltep~~n~~~~Re~~~eilFE~f~vpav~l~~~~vlalya~G~~tglVVDiG~g~T~vvPI~~G~~l~~ai~rl~vg 195 (498)
T 3qb0_A 116 PALLTEPVWNSTENRKKSLEVLLEGMQFEACYLAPTSTCVSFAAGRPNCLVVDIGHDTCSVSPIVDGMTLSKSTRRNFIA 195 (498)
T ss_dssp CEEEEECTTCCHHHHHHHHHHHHTTSCCSEEEEEEHHHHHHHHHTCSSEEEEEECSSCEEEEEEETTEECGGGCEEESCS
T ss_pred ceEEEeCCCCcHHHHHHHHHHHHhhcCCCeEeecchHHHHHHHcCCCeEEEEEcCCCcEEEEEEeCCEEccccceecccc
Confidence 5999999999888775 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCcc-----------cccc------cccc-hHHHHHHHHHHceeccCC-ccchh------hh
Q 009546 256 GEDISRCLLWTQRHHQTWPQIR-----------TDIL------TKAM-DLLMLNRIKESYCEIKEG-EIDAV------AV 310 (532)
Q Consensus 256 G~~lt~~L~~lL~~~~~~p~~~-----------~~~l------~~~~-d~~~~~~iKe~~c~v~~~-e~~~~------~~ 310 (532)
|++||++|.++|+.++..|.|. ++.+ .+.. +.+++++|||++|||+.+ +++.. ..
T Consensus 196 G~~lt~~L~~lL~~~~i~P~~~i~~k~~~~~~~~~~~~~~~s~~~~~~~~~iv~~iKE~~c~Va~~~~~~~~~~~~~~~~ 275 (498)
T 3qb0_A 196 GKFINHLIKKALEPKEIIPLFAIKQRKPEFIKKTFDYEVDKSLYDYANNRGFFQECKETLCHICPTKTLEETKTELSSTA 275 (498)
T ss_dssp HHHHHHHHHHHTTTSCCCCSTTEEECSSSCEECCCSSCCCHHHHHHHHHHTHHHHHHHHTCCCCSSCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhccccchhhhcccccccccccCCCccCccHHHHHHHHHHHHHHHHhhEEecCCccHhHHhhhccCcC
Confidence 9999999999998764433321 1111 1122 456999999999999975 33221 11
Q ss_pred hccccCCCCCCCceeeeee-ccCCCCCCCCCcccCC-CCCCCCCCCCCCCccccccCCccccCC--CCCCCCCCCCCCC-
Q 009546 311 VHSYEDGMPPGSHKTRLIA-LNVPPMGLFYPKLLVP-DVYPPPPRSWFNDYEDMLEDTWHTDFP--RRSDISDNFYPGI- 385 (532)
Q Consensus 311 ~~~y~~~~p~~~~k~~~~~-~~~~P~~lf~p~~~~~-e~~~~p~~~~~~d~ed~l~d~~~~~~~--eR~~~~E~LFp~~- 385 (532)
...|+ +|||....-..+ .+.+|+.||+|.++.. +.. |. ..+-.++.++-++. .|.. +.+....
T Consensus 276 ~~~ye--LPDG~~i~lg~E~Rf~~pE~LF~P~~~g~~~~~--~~------~~~~~~~~~~~~y~~~~~~~--~~~~~~~~ 343 (498)
T 3qb0_A 276 KRSIE--SPWNEEIVFDNETRYGFAEELFLPKEDDIPANW--PR------SNSGVVKTWRNDYVPLKRTK--PSGVNKSD 343 (498)
T ss_dssp CEEEE--CSSSCEEEECHHHHHHHHHTTTSCCGGGSCTTS--CC------CSSSCCCCCSCCCCCCCBCC----------
T ss_pred ceEEE--CCCCCEEEECchHhhhCchhhCCHhHcCCcccc--cc------cccccccccccccccccccc--cccccccc
Confidence 23454 788764333334 5566777777765421 100 00 00011111111100 0000 0000000
Q ss_pred CCCCC--CCCCCCc-------------------cC-----CCCCcccCCCHHHHHHHHHhcCCChHHHHHhhhCeEEEcC
Q 009546 386 NVGLP--MWESYPV-------------------LT-----TKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGG 439 (532)
Q Consensus 386 ~g~~~--~~~~~~~-------------------~~-----~~~~~~~~~gL~e~I~~sI~~~~~~d~r~~L~~NIvL~GG 439 (532)
..... ..+..+. .| ......+..||+++|.+||++| |+|+|+.||+||||+||
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~e~i~~sI~~c-d~d~r~~L~~nIvLsGG 422 (498)
T 3qb0_A 344 KKVTPTEEKEQEAVSKSTSPAANSADTPNETGKRPLEEEKPPKENNELIGLADLVYSSIMSS-DVDLRATLAHNVVLTGG 422 (498)
T ss_dssp ---------------------------------------------CCSCCHHHHHHHHHHTS-CTTTHHHHHTTEEEESG
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccCCCchHHHHHHHHhC-CHHHHHHHhcCEEEeCC
Confidence 00000 0000000 00 0000126789999999999999 99999999999999999
Q ss_pred CCCcCChHHHHHHHHhhhCCCCCCcceEEEcCC--CCCCccceEeceeeeecccCccceeEeHHHHHHcCc-ceeeecc
Q 009546 440 VALTGGLIPAVEERVLHAIPSNEAIDMVEVLQS--RTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGI-HIGSGRK 515 (532)
Q Consensus 440 ~S~i~Gf~eRL~~EL~~~~p~~~~~~~V~v~~~--~~~~~~~aW~GgSIlasL~~f~~~wITr~eYeE~G~-~i~~rk~ 515 (532)
+|++|||.+||++||..++| ..+ |+|... +.+|.+++|+||||||+|++|++|||||+||+|+|+ +|++|||
T Consensus 423 st~~pGf~~Rl~~El~~l~p-~~~---i~v~~~~~~~er~~s~WiGgsilasl~~f~~~witk~EY~E~G~~~iv~~kc 497 (498)
T 3qb0_A 423 TSSIPGLSDRLMTELNKILP-SLK---FRILTTGHTIERQYQSWLGGSILTSLGTFHQLWVGKKEYEEVGVERLLNDRF 497 (498)
T ss_dssp GGGSTTHHHHHHHHHHHHST-TSC---CCEECCSCTGGGGSHHHHHHHHHHTCHHHHHTSEEHHHHHTTCCHHHHHHTT
T ss_pred ccCchhHHHHHHHHHHHhCC-CCe---eEEEcCCCCCccCccEEcccEEEecCcchhceEEEHHHHhhhCcHhhccccC
Confidence 99999999999999999999 544 455542 268999999999999999999999999999999999 9999999
No 4
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.9e-69 Score=573.61 Aligned_cols=387 Identities=19% Similarity=0.268 Sum_probs=292.1
Q ss_pred HHHHhhhhcCccCCccccCCCCCccccccccccccCcccccccccccccccCCCCCcccccccCCCCCCcccccCCCCCC
Q 009546 18 YDVIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRKDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRNT 97 (532)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~n~~~~p~~i~~h~~~ 97 (532)
+|.+++.+|++|.+++.|...||..+||...-...++..+.+=.| + .+. -..|..
T Consensus 10 iDnGs~~~KaG~ag~~~P~~v~Ps~vg~~~~~~~~~~~~~~~~~~---~----------------~~~-----~~~~~~- 64 (427)
T 3dwl_A 10 MDNGTGYSKLGYAGNDAPSYVFPTVIATRSAGASSGPAVSSKPSY---M----------------ASK-----GSGHLS- 64 (427)
T ss_dssp ECCCSSBC-CEETTSSSCSCCCBCCEECC---------------------------------------------------
T ss_pred EECCCCeEEEEECCCCCCCCcCCceEEeecccccccccccccccc---c----------------ccc-----cccccc-
Confidence 688999999999999999999999999975100000000000000 0 000 000000
Q ss_pred CccccccccccCcceEEccccccCCCCCCceEecceeCCeeeecCCCCcccCHHHHHHHHHHHhhhhcCCCCCCCCccce
Q 009546 98 DIKELNSSERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSA 177 (532)
Q Consensus 98 ~~~~~~~~~~~~~~~~vG~ea~~~~~~~~~~l~~Pi~~G~i~~~~~~~~q~dwd~le~iw~~i~~~~L~i~~~e~~~~~~ 177 (532)
-. .....++++||+||.... ...+.++|||++|+|. |||++|.||+|+|++.|+++|+++ +
T Consensus 65 ----~~-~~~~~~~~~vG~ea~~~~-~~~l~~~~Pi~~GvI~---------dwd~~e~iw~~~~~~~L~v~~~~~----p 125 (427)
T 3dwl_A 65 ----SK-RATEDLDFFIGNDALKKA-SAGYSLDYPIRHGQIE---------NWDHMERFWQQSLFKYLRCEPEDH----Y 125 (427)
T ss_dssp ---------CCSSCCEETHHHHHTH-HHHCCCCCSEETTEEC---------CHHHHHHHHHHHHHTTSCCCGGGC----E
T ss_pred ----cc-cCcccCCeEEchHHhhCc-ccCcEEecCcccCeec---------cHHHHHHHHHHHHhHhhCCCCcCC----c
Confidence 00 011346789999999764 2378999999999999 999999999999999999999888 7
Q ss_pred EEecCCCCChHHHHH-HHHHHHHhcCCCEEEEeehhhHhhhhcC--------CceEEEEeeCCCcEEEEEeeCCeeccCC
Q 009546 178 ILVLPESFDNREIKE-MLSIVLRDLRFASAVVHQEGLAAVFGNG--------LSTACVVNMGAQVTSVICVEDGVALPNT 248 (532)
Q Consensus 178 Vlv~e~~~~~~~~rk-l~eilFE~~~~psv~~~~~avlalya~G--------~~tglVVDiG~~~T~VvpV~dG~vl~~s 248 (532)
||+++++++++..|+ ++|++||+|+||+++++.+++||+||+| .+||||||+|++.|+|+||+||+++.++
T Consensus 126 vlltep~~~~~~~re~~~ei~FE~~~~p~v~l~~~~vla~~a~G~~~~~~~~~~tglVVDiG~g~T~v~PV~~G~~l~~~ 205 (427)
T 3dwl_A 126 FLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSS 205 (427)
T ss_dssp EEEEECTTCCHHHHHHHHHHHTTTTCCSEEEEEEHHHHHHHGGGGSTTTCSCCCCEEEEEESSSCEEEEEEETTEECGGG
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhccCceeeecchHHHHHHhcCCcccccCCCceEEEEECCCCceEEEEEECCEEehhh
Confidence 999999999888875 9999999999999999999999999999 6899999999999999999999999999
Q ss_pred cEEecchHHHHHHHHHHHHHhcCCCCCcccccccccchHHHHHHHHHHceeccCCccchhhhhccccCCCCCCCceeeee
Q 009546 249 EKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLI 328 (532)
Q Consensus 249 ~~~~~~GG~~lt~~L~~lL~~~~~~p~~~~~~l~~~~d~~~~~~iKe~~c~v~~~e~~~~~~~~~y~~~~p~~~~k~~~~ 328 (532)
++++++||+++|++|.++|+.++. . ..+.+++++|||++|||+.+. +. ....+.. .+.....+.
T Consensus 206 ~~rl~~gG~~lt~~L~~lL~~~~~-------~---~~~~~~~~~IKe~~cyv~~d~-~~--e~~~~~~-~~~~~~~~~-- 269 (427)
T 3dwl_A 206 IKTMPLAGRDVTYFVQSLLRDRNE-------P---DSSLKTAERIKEECCYVCPDI-VK--EFSRFDR-EPDRYLKYA-- 269 (427)
T ss_dssp CEEESCCHHHHHHHHHHTTC------------------CHHHHHHHHHHCCCCSCH-HH--HHHHTTC------CCBC--
T ss_pred heeccccHHHHHHHHHHHHHHcCC-------C---chhHHHHHHHHHhcCcccCCH-HH--HHHHhhc-CccccceeE--
Confidence 999999999999999999987652 1 346689999999999998641 11 1111110 111000000
Q ss_pred eccCCCCCCCCCcccCCCCCCCCCCCCCCCccccccCCc--cccCC-CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCc
Q 009546 329 ALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTW--HTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKK 404 (532)
Q Consensus 329 ~~~~~P~~lf~p~~~~~e~~~~p~~~~~~d~ed~l~d~~--~~~~~-eR~~~~E~LF-p~~~g~~~~~~~~~~~~~~~~~ 404 (532)
+. .+++. .+.++ |||.++|.|| |+..+
T Consensus 270 ---l~-----------------------------~~~g~~~~i~ig~erf~~pE~LF~P~~~g----------------- 300 (427)
T 3dwl_A 270 ---SE-----------------------------SITGHSTTIDVGFERFLAPEIFFNPEIAS----------------- 300 (427)
T ss_dssp ---C--------------------------------------CBCCTHHHHSGGGGTCGGGTC-----------------
T ss_pred ---ee-----------------------------CCCCCeeEEEEChHhhhChhhccCchhcC-----------------
Confidence 00 01111 23343 7999999999 76654
Q ss_pred cc-CCCHHHHHHHHHhcCCChHHHHHhhhCeEEEcCCCCcCChHHHHHHHHhhhCCCCC------------CcceEEEcC
Q 009546 405 EE-KIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNE------------AIDMVEVLQ 471 (532)
Q Consensus 405 ~~-~~gL~e~I~~sI~~~~~~d~r~~L~~NIvL~GG~S~i~Gf~eRL~~EL~~~~p~~~------------~~~~V~v~~ 471 (532)
.+ ..||+++|.++|++| |+|+|+.|++||||+||+|++|||.+||++||..++|... .. +|+|..
T Consensus 301 ~~~~~gI~~~i~~sI~~c-~~dlr~~L~~nIvLtGG~sl~~G~~~RL~~El~~l~~~~~~~~~~~~~~~p~~~-~vkv~~ 378 (427)
T 3dwl_A 301 SDFLTPLPELVDNVVQSS-PIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGV-DVNVIS 378 (427)
T ss_dssp SSCCSCHHHHHHHHHHTS-CHHHHHHHHHCEEEESGGGCSTTTTHHHHHHHHHHHTTC-------------CC-CCCEEC
T ss_pred CccCCCccHHHHHHHHhC-CHHHHHHHhCCEEEEccCcCCCChHHHHHHHHHHhhhhhccccccccccCCCce-eEEEec
Confidence 34 479999999999999 9999999999999999999999999999999999874311 11 456665
Q ss_pred CCCCCccceEeceeeeecccCccceeEeHHHHHHcCcceeeeccC
Q 009546 472 SRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKY 516 (532)
Q Consensus 472 ~~~~~~~~aW~GgSIlasL~~f~~~wITr~eYeE~G~~i~~rk~~ 516 (532)
+.+|.|++|+||||||+|++|+++||||+||+|+|++|++||+.
T Consensus 379 -~~~r~~s~WiGGSilasl~~f~~~witk~EYeE~G~~iv~~~~~ 422 (427)
T 3dwl_A 379 -HKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARRYQI 422 (427)
T ss_dssp -CTTCTTHHHHHHHHHHHSTTHHHHSEEHHHHHHSCGGGGSCCCC
T ss_pred -CCccccceecCceeeccccchhheeEEHHHHhhhChHhheeccc
Confidence 46899999999999999999999999999999999999999864
No 5
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B*
Probab=100.00 E-value=1.3e-61 Score=511.26 Aligned_cols=362 Identities=21% Similarity=0.368 Sum_probs=135.5
Q ss_pred HHHHHhhhhcCccCCccccCCCCCccccccccccccCcccccccccccccccCCCCCcccccccCCCCCCcccccCCCCC
Q 009546 17 AYDVIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRKDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRN 96 (532)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~n~~~~p~~i~~h~~ 96 (532)
..|.+++.+|++|.+++.|...||..+||... + .++ + .+
T Consensus 10 vID~Gs~~~k~G~ag~~~P~~~~Ps~v~~~~~------~--------~~~-~-------------~~------------- 48 (394)
T 1k8k_B 10 VCDNGTGFVKCGYAGSNFPEHIFPALVGRPII------R--------STT-K-------------VG------------- 48 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEECCCCeEEEeeCCCCCcceeccceeEEEcc------c--------ccc-c-------------cc-------------
Confidence 68999999999999999999999999998541 0 000 0 00
Q ss_pred CCccccccccccCcceEEccccccCCCCCCceEecceeCCeeeecCCCCcccCHHHHHHHHHHHh-hhhcCCCCCCCCcc
Q 009546 97 TDIKELNSSERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWIL-TEKLHIPRSERNLY 175 (532)
Q Consensus 97 ~~~~~~~~~~~~~~~~~vG~ea~~~~~~~~~~l~~Pi~~G~i~~~~~~~~q~dwd~le~iw~~i~-~~~L~i~~~e~~~~ 175 (532)
++ ..++++||++|... +..+.+++||++|+|. ||++++.||+|+| ++.|++++.++
T Consensus 49 ----~~-----~~~~~~vG~ea~~~--~~~~~~~~Pi~~G~i~---------dwd~~e~i~~~~~~~~~L~~~~~~~--- 105 (394)
T 1k8k_B 49 ----NI-----EIKDLMVGDEASEL--RSMLEVNYPMENGIVR---------NWDDMKHLWDYTFGPEKLNIDTRNC--- 105 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----CC-----CCCCeEEChHHHhc--CCCceeeccccCCEEe---------cHHHHHHHHHHHhcccccCcCCCCC---
Confidence 00 23568999999876 3678999999999998 9999999999999 88999998887
Q ss_pred ceEEecCCCCChHHHHH-HHHHHHHhcCCCEEEEeehhhHhhhhcCCceEEEEeeCCCcEEEEEeeCCeeccCCcEEecc
Q 009546 176 SAILVLPESFDNREIKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPF 254 (532)
Q Consensus 176 ~~Vlv~e~~~~~~~~rk-l~eilFE~~~~psv~~~~~avlalya~G~~tglVVDiG~~~T~VvpV~dG~vl~~s~~~~~~ 254 (532)
+|++++|+++++..|+ +++++||.||+|+++++++++||+||+|+++|||||+|+++|+|+||++|+++.+++.++++
T Consensus 106 -~vllt~p~~~~~~~r~~~~e~~fe~~~~~~~~~~~~~~~a~~a~g~~~~lVVDiG~g~T~v~pv~~G~~~~~~~~~~~~ 184 (394)
T 1k8k_B 106 -KILLTEPPMNPTKNREKIVEVMFETYQFSGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHICPVYEGFSLPHLTRRLDI 184 (394)
T ss_dssp -------------------------------------------------CCEEEECSSCEEEECEETTEECSTTCEEESC
T ss_pred -cEEEEECCCCCHHHHHHHHHHhhhccCCCeEEEEhhHHHHHHhCCCceEEEEEcCCCceEeeeeECCEEcccceEEeec
Confidence 6999999988877775 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCCCCcccccccccchHHHHHHHHHHceeccCCccchhhhhccccCCCCCC-CceeeeeeccCC
Q 009546 255 GGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPG-SHKTRLIALNVP 333 (532)
Q Consensus 255 GG~~lt~~L~~lL~~~~~~p~~~~~~l~~~~d~~~~~~iKe~~c~v~~~e~~~~~~~~~y~~~~p~~-~~k~~~~~~~~~ 333 (532)
||+++|++|.++|+.++. ++.+..+.+.+++||+++||++.+...... .... ..+ ...+
T Consensus 185 GG~~lt~~l~~~l~~~~~-------~~~~~~~~~~ae~iK~~~~~v~~d~~~~~~---~~~~--~~~~~~~~-------- 244 (394)
T 1k8k_B 185 AGRDITRYLIKLLLLRGY-------AFNHSADFETVRMIKEKLCYVGYNIEQEQK---LALE--TTVLVESY-------- 244 (394)
T ss_dssp CHHHHHHHHHHHHHHTTC-------CCCTTTTHHHHHHHHHHHCCCCSSHHHHHH---HHHH--CSTTCEEE--------
T ss_pred cHHHHHHHHHHHHHhcCC-------CCCcHHHHHHHHHHHHhheeEecCHHHHHH---hhcc--CCcCceEE--------
Confidence 999999999999987652 344456789999999999999854111000 0000 000 0000
Q ss_pred CCCCCCCcccCCCCCCCCCCCCCCCccccccCCccccCC-CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCcccCCCHH
Q 009546 334 PMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEEKIGLA 411 (532)
Q Consensus 334 P~~lf~p~~~~~e~~~~p~~~~~~d~ed~l~d~~~~~~~-eR~~~~E~LF-p~~~g~~~~~~~~~~~~~~~~~~~~~gL~ 411 (532)
.++++..+.++ +|+.++|.|| |+..+ .+..+|+
T Consensus 245 ----------------------------~lpdg~~i~i~~erf~~~E~Lf~p~~~~-----------------~~~~~i~ 279 (394)
T 1k8k_B 245 ----------------------------TLPDGRIIKVGGERFEAPEALFQPHLIN-----------------VEGVGVA 279 (394)
T ss_dssp ----------------------------ECTTSCEEEECTHHHHTGGGGTCGGGGT-----------------CCSCCHH
T ss_pred ----------------------------ECCCCCEEEECchhhcChHhhCCchhcc-----------------CCCCCHH
Confidence 02233333333 6889999999 66554 4667999
Q ss_pred HHHHHHHhcCCChHHHHHhhhCeEEEcCCCCcCChHHHHHHHHhhhC-----------CCCCCcceEEEcCCCCCCccce
Q 009546 412 EAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAI-----------PSNEAIDMVEVLQSRTNPTYVS 480 (532)
Q Consensus 412 e~I~~sI~~~~~~d~r~~L~~NIvL~GG~S~i~Gf~eRL~~EL~~~~-----------p~~~~~~~V~v~~~~~~~~~~a 480 (532)
++|.++|.+| |+|+|+.|++||+|+||+|++|||.+||++||..+. |... +|+|.. +.+|.+++
T Consensus 280 ~~i~~~i~~~-~~d~r~~l~~nIvLtGG~s~~~G~~~rl~~el~~~~~~~~~~~~~~~p~~~---~v~v~~-~~~~~~~~ 354 (394)
T 1k8k_B 280 ELLFNTIQAA-DIDTRSEFYKHIVLSGGSTMYPGLPSRLERELKQLYLERVLKGDVEKLSKF---KIRIED-PPRRKHMV 354 (394)
T ss_dssp HHHHHHHHHS-CTTTHHHHHTTCEEESGGGCSTTHHHHHHHHHHHHHHHHTCSSCCCTTCCC---CC-------------
T ss_pred HHHHHHHHhC-CHHHHHHHHhCEEEeCcccccccHHHHHHHHHHHHHhhhhcccccCCCCce---EEEEec-CCCcceeE
Confidence 9999999999 999999999999999999999999999999999876 5544 356654 35789999
Q ss_pred EeceeeeecccCcc-ceeEeHHHHHHcCcceeee
Q 009546 481 WKGGAVLGILDFGR-DAWIHREDWIRNGIHIGSG 513 (532)
Q Consensus 481 W~GgSIlasL~~f~-~~wITr~eYeE~G~~i~~r 513 (532)
|+||||+|+|++|+ ++||||+||+|+|+++++|
T Consensus 355 w~Ggsilasl~~f~~~~~itk~eY~e~G~~~~~~ 388 (394)
T 1k8k_B 355 FLGGAVLADIMKDKDNFWMTRQEYQEKGVRVLEK 388 (394)
T ss_dssp ----------------------------------
T ss_pred EhhhHHhhCCcCCccceeecHHHHhhhCHHHHHh
Confidence 99999999999999 9999999999999999997
No 6
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ...
Probab=100.00 E-value=1.7e-60 Score=499.54 Aligned_cols=363 Identities=20% Similarity=0.368 Sum_probs=293.2
Q ss_pred HHHHHhhhhcCccCCccccCCCCCccccccccccccCcccccccccccccccCCCCCcccccccCCCCCCcccccCCCCC
Q 009546 17 AYDVIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRKDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRN 96 (532)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~n~~~~p~~i~~h~~ 96 (532)
..|.+++.+|++|.+++.|...+|..+||... + .++ . ++
T Consensus 9 vID~Gs~~~k~G~~~~~~p~~~~ps~v~~~~~------~--------~~~-----~--------~~-------------- 47 (375)
T 2fxu_A 9 VCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRH------Q--------GVM-----V--------GM-------------- 47 (375)
T ss_dssp EEEECSSEEEEEETTCSSCSEEEECCEEEECT------T--------TC-------------------------------
T ss_pred EEECCCCeEEEEECCCCCCceeeccccccccc------c--------ccc-----c--------CC--------------
Confidence 36889999999999999998899999997430 0 000 0 00
Q ss_pred CCccccccccccCcceEEccccccCCCCCCceEecceeCCeeeecCCCCcccCHHHHHHHHHHHhhhhcCCCCCCCCccc
Q 009546 97 TDIKELNSSERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYS 176 (532)
Q Consensus 97 ~~~~~~~~~~~~~~~~~vG~ea~~~~~~~~~~l~~Pi~~G~i~~~~~~~~q~dwd~le~iw~~i~~~~L~i~~~e~~~~~ 176 (532)
..++++||++|... ...+.+++||++|.|. ||+.++.+|+|+|++.|++++.++
T Consensus 48 -----------~~~~~~vG~~a~~~--~~~~~~~~Pi~~G~i~---------d~d~~e~i~~~~~~~~L~~~~~~~---- 101 (375)
T 2fxu_A 48 -----------GQKDSYVGDEAQSK--RGILTLKYPIEHGIIT---------NWDDMEKIWHHTFYNELRVAPEEH---- 101 (375)
T ss_dssp --------------CCEEHHHHHHH--TTSEEEECSEETTEEC---------CHHHHHHHHHHHHHTTSCCCGGGS----
T ss_pred -----------CCCCeEechhHhhc--CcccceeccccCCccc---------CHHHHHHHHHHHHHHhcCCCCcCC----
Confidence 13457999999887 3579999999999998 999999999999988899998777
Q ss_pred eEEecCCCCChHHHHH-HHHHHHHhcCCCEEEEeehhhHhhhhcCCceEEEEeeCCCcEEEEEeeCCeeccCCcEEecch
Q 009546 177 AILVLPESFDNREIKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFG 255 (532)
Q Consensus 177 ~Vlv~e~~~~~~~~rk-l~eilFE~~~~psv~~~~~avlalya~G~~tglVVDiG~~~T~VvpV~dG~vl~~s~~~~~~G 255 (532)
++++++|++++...|+ +++++||.+|+++++++++++||+||+|+++|||||+|+++|+|+||++|+++.++..++++|
T Consensus 102 ~vvit~p~~~~~~~r~~~~e~~fe~~g~~~~~~~~e~~aaa~a~g~~~~lVvDiG~gtt~v~~v~~G~~~~~~~~~~~~G 181 (375)
T 2fxu_A 102 PTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLA 181 (375)
T ss_dssp CEEEEECTTCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHTTCSSEEEEEECSSCEEEEEEETTEECGGGCEEESCC
T ss_pred cEEEEeCCCCcHHHHHHHHHHHHHhcCcceEEEccchheeeeecCCCeEEEEEcCCCceEEeEeECCEEeccceEEeccC
Confidence 6999999988877775 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCcccccccccchHHHHHHHHHHceeccCCccchhhhhccccCCCCCC-CceeeeeeccCCC
Q 009546 256 GEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPG-SHKTRLIALNVPP 334 (532)
Q Consensus 256 G~~lt~~L~~lL~~~~~~p~~~~~~l~~~~d~~~~~~iKe~~c~v~~~e~~~~~~~~~y~~~~p~~-~~k~~~~~~~~~P 334 (532)
|+++|++|.++|+.++. ++....+.+.+++||+++||++.+..+. ..... ...+ ...+
T Consensus 182 G~~lt~~l~~~l~~~~~-------~~~~~~~~~~~e~iK~~~~~v~~~~~~e---~~~~~--~~~~~~~~~--------- 240 (375)
T 2fxu_A 182 GRDLTDYLMKILTERGY-------SFVTTAEREIVRDIKEKLCYVALDFENE---MATAA--SSSSLEKSY--------- 240 (375)
T ss_dssp HHHHHHHHHHHHHHHTC-------CCCSHHHHHHHHHHHHHHCCCCSSHHHH---HHHHH--HCSTTCEEE---------
T ss_pred HHHHHHHHHHHHHhcCC-------CCCcHHHHHHHHHHHHHHHhhcccHHHH---HHhhc--ccCccCeEE---------
Confidence 99999999999987642 3433457789999999999997531110 00000 0000 0000
Q ss_pred CCCCCCcccCCCCCCCCCCCCCCCccccccCCccccCC-CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCcccCCCHHH
Q 009546 335 MGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEEKIGLAE 412 (532)
Q Consensus 335 ~~lf~p~~~~~e~~~~p~~~~~~d~ed~l~d~~~~~~~-eR~~~~E~LF-p~~~g~~~~~~~~~~~~~~~~~~~~~gL~e 412 (532)
.++++..+.++ +|+.++|.|| |...+ .+..+|++
T Consensus 241 ---------------------------~lpdg~~i~i~~erf~~~E~lf~p~~~~-----------------~~~~~i~~ 276 (375)
T 2fxu_A 241 ---------------------------ELPDGQVITIGNERFRCPETLFQPSFIG-----------------MESAGIHE 276 (375)
T ss_dssp ---------------------------ECTTSCEEEESTHHHHHHHTTTCGGGGT-----------------CCSCCHHH
T ss_pred ---------------------------ECCCCCEEEEChhheechHhhCCCccCC-----------------CCCCCHHH
Confidence 01223333333 5888899999 66554 35679999
Q ss_pred HHHHHHhcCCChHHHHHhhhCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCccceEeceeeeecccC
Q 009546 413 AVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDF 492 (532)
Q Consensus 413 ~I~~sI~~~~~~d~r~~L~~NIvL~GG~S~i~Gf~eRL~~EL~~~~p~~~~~~~V~v~~~~~~~~~~aW~GgSIlasL~~ 492 (532)
+|.++|.+| |+|+|+.|++||+|+||+|++|||.+||++||..+.|...++ +|.. +.+|.+++|+|||++|++++
T Consensus 277 ~i~~~i~~~-~~~~~~~l~~~IvLtGG~s~~pG~~~rl~~el~~~~p~~~~v---~v~~-~~~p~~~~w~G~si~a~l~~ 351 (375)
T 2fxu_A 277 TTYNSIMKC-DIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKI---KIIA-PPERKYSVWIGGSILASLST 351 (375)
T ss_dssp HHHHHHHTS-CHHHHHHHHTCEEEESGGGCSTTHHHHHHHHHHHHSCTTCCC---CEEC-CTTTTSHHHHHHHHHHHCGG
T ss_pred HHHHHHHhC-CHHHHHHHHhCcEeeCCCCCCccHHHHHHHHHHHhCCCCeeE---EEEc-CCCCCccEEcchHHhhCccc
Confidence 999999999 999999999999999999999999999999999998876544 4443 35889999999999999999
Q ss_pred ccceeEeHHHHHHcCcceeeeccC
Q 009546 493 GRDAWIHREDWIRNGIHIGSGRKY 516 (532)
Q Consensus 493 f~~~wITr~eYeE~G~~i~~rk~~ 516 (532)
|+++||||+||+|+|+++++|||+
T Consensus 352 f~~~~itk~ey~e~G~~~~~~k~~ 375 (375)
T 2fxu_A 352 FQQMWITKQEYDEAGPSIVHRKCF 375 (375)
T ss_dssp GGGGSEEHHHHHHHCGGGGC----
T ss_pred HhhceeeHHHHhhhChHHHhhhcc
Confidence 999999999999999999999996
No 7
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A
Probab=100.00 E-value=1.9e-57 Score=482.91 Aligned_cols=377 Identities=18% Similarity=0.267 Sum_probs=291.8
Q ss_pred HHHHHhhhhcCccCCccccCCCCCccccccccccccCcccccccccccccccCCCCCcccccccCCCCCCcccccCCCCC
Q 009546 17 AYDVIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRKDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRN 96 (532)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~n~~~~p~~i~~h~~ 96 (532)
..|.+++.+|++|.+++.|...||..+||... ++ . . ..++. +..
T Consensus 9 vID~Gs~~~k~G~~~~~~p~~~~Ps~v~~~~~------~~-~-------~--------------~~~~~--------~~~ 52 (418)
T 1k8k_A 9 VVDCGTGYTKLGYAGNTEPQFIIPSCIAIKES------AK-V-------G--------------DQAQR--------RVM 52 (418)
T ss_dssp EEEECSSEEEEEETTCSSCSEEEESCEEECC-----------------------------------------------CC
T ss_pred EEECCCCeEEEeeCCCCCCCCcCCceEEEECc------cc-c-------c--------------ccccc--------ccc
Confidence 46889999999999999998899999998541 00 0 0 00000 000
Q ss_pred CCccccccccccCcceEEccccccCCCCCCceEecceeCCeeeecCCCCcccCHHHHHHHHHHHhhhhcCCCCCCCCccc
Q 009546 97 TDIKELNSSERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYS 176 (532)
Q Consensus 97 ~~~~~~~~~~~~~~~~~vG~ea~~~~~~~~~~l~~Pi~~G~i~~~~~~~~q~dwd~le~iw~~i~~~~L~i~~~e~~~~~ 176 (532)
..+ ..++++||++|...+ .+.+++||++|.|. ||+.++.||+|+|++.|+++++++
T Consensus 53 ---~~~-----~~~~~~vG~~a~~~~---~~~~~~pi~~G~i~---------d~d~~e~i~~~~~~~~L~~~~~~~---- 108 (418)
T 1k8k_A 53 ---KGV-----DDLDFFIGDEAIEKP---TYATKWPIRHGIVE---------DWDLMERFMEQVIFKYLRAEPEDH---- 108 (418)
T ss_dssp ---CTT-----GGGCEEEGGGGTSCT---TSEEECCEETTEES---------CHHHHHHHHHHHHHTTTCCCGGGC----
T ss_pred ---ccc-----cccCeEEChHHHhcC---CCEEeccccCCEEC---------CHHHHHHHHHHHHHhccCCCCCCC----
Confidence 001 124689999999873 59999999999998 999999999999988899988877
Q ss_pred eEEecCCCCChHHHHH-HHHHHHHhcCCCEEEEeehhhHhhhh---------cCCceEEEEeeCCCcEEEEEeeCCeecc
Q 009546 177 AILVLPESFDNREIKE-MLSIVLRDLRFASAVVHQEGLAAVFG---------NGLSTACVVNMGAQVTSVICVEDGVALP 246 (532)
Q Consensus 177 ~Vlv~e~~~~~~~~rk-l~eilFE~~~~psv~~~~~avlalya---------~G~~tglVVDiG~~~T~VvpV~dG~vl~ 246 (532)
++++++|++.+...|+ +.+++||.+|++++++++++++|+|+ .|. +|||||+|+++|+|+||++|+++.
T Consensus 109 ~vvit~p~~~~~~~r~~~~e~~fe~~g~~~~~l~~ep~aa~~a~~~~~~~~~~~~-~glVvDiG~gtt~v~~v~~G~~~~ 187 (418)
T 1k8k_A 109 YFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTL-TGTVIDSGDGVTHVIPVAEGYVIG 187 (418)
T ss_dssp CEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHGGGSTTCCSCCC-CEEEEEESSSCEEEEEEETTEECG
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHhcCCCEEEEechHHHHhhhhhcccccCCCCC-eEEEEEcCCCceEEEEeECCEEcc
Confidence 6999999888777765 99999999999999999999999999 566 999999999999999999999999
Q ss_pred CCcEEecchHHHHHHHHHHHHHhcCCCCCcccccccccchHHHHHHHHHHceeccCCccchhhhhccccCCCCCC-Ccee
Q 009546 247 NTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPG-SHKT 325 (532)
Q Consensus 247 ~s~~~~~~GG~~lt~~L~~lL~~~~~~p~~~~~~l~~~~d~~~~~~iKe~~c~v~~~e~~~~~~~~~y~~~~p~~-~~k~ 325 (532)
+++.++++||+++|++|.++|..++. .+....+.+.+++||+++||++.+.... ...+.. .+.. ...+
T Consensus 188 ~~~~~~~lGG~~lt~~l~~~l~~~~~-------~~~~~~~~~~~e~iK~~~~~v~~~~~~e---~~~~~~-~~~~~~~~~ 256 (418)
T 1k8k_A 188 SCIKHIPIAGRDITYFIQQLLRDREV-------GIPPEQSLETAKAVKERYSYVCPDLVKE---FNKYDT-DGSKWIKQY 256 (418)
T ss_dssp GGCEEESCSHHHHHHHHHHHHHTTCC-------CCCGGGHHHHHHHHHHHHCCCCSCHHHH---HHHHHH-SGGGTCEEE
T ss_pred cceEEEeCcHHHHHHHHHHHHHhcCC-------CCCCHHHHHHHHHHHHhhchhcccHHHH---HHhhcc-cccccceeE
Confidence 99999999999999999999987642 2333467889999999999998641100 000000 0000 0011
Q ss_pred eeeeccCCCCCCCCCcccCCCCCCCCCCCCCCCccccccCCccccCC-CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCC
Q 009546 326 RLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPK 403 (532)
Q Consensus 326 ~~~~~~~~P~~lf~p~~~~~e~~~~p~~~~~~d~ed~l~d~~~~~~~-eR~~~~E~LF-p~~~g~~~~~~~~~~~~~~~~ 403 (532)
.+. .+. .. ....+.++ +||.++|.|| |...+
T Consensus 257 ~lp------d~~------~~-------------------~~~~i~l~~erf~~~E~lF~P~~~~---------------- 289 (418)
T 1k8k_A 257 TGI------NAI------SK-------------------KEFSIDVGYERFLGPEIFFHPEFAN---------------- 289 (418)
T ss_dssp EEE------CTT------TC-------------------CEEEEEECTHHHHHHHTTTCGGGTC----------------
T ss_pred ECC------CCC------CC-------------------cccEEEeChHHhhCcHhhCCCccCC----------------
Confidence 111 000 00 00012232 5888899999 66543
Q ss_pred ccc-CCCHHHHHHHHHhcCCChHHHHHhhhCeEEEcCCCCcCChHHHHHHHHhhhC----------------CCCCCcce
Q 009546 404 KEE-KIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAI----------------PSNEAIDM 466 (532)
Q Consensus 404 ~~~-~~gL~e~I~~sI~~~~~~d~r~~L~~NIvL~GG~S~i~Gf~eRL~~EL~~~~----------------p~~~~~~~ 466 (532)
.+ ..+|+++|.++|.+| +.|+|+.+++||+|+||+|++|||.+||++||...+ |... +
T Consensus 290 -~~~~~~i~~~i~~si~~~-~~~~~~~l~~~IvL~GG~s~~pg~~~rl~~el~~~~~~~~~~~~~~~~~~~~p~~~---~ 364 (418)
T 1k8k_A 290 -PDFTQPISEVVDEVIQNC-PIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPI---D 364 (418)
T ss_dssp -TTCCCCHHHHHHHHHHHS-CGGGTTHHHHCEEEESGGGCSTTHHHHHHHHHHHHHHHHHHHHHHHC----CCCCC---C
T ss_pred -CCCCCCHHHHHHHHHHcC-CHHHHHHHHhceEEeCCccccccHHHHHHHHHHHhhccccccccccccccCCCCce---e
Confidence 23 369999999999999 999999999999999999999999999999998875 3333 4
Q ss_pred EEEcCCCCCCccceEeceeeeecccCccceeEeHHHHHHcCcceeeecc-CCC
Q 009546 467 VEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRK-YKD 518 (532)
Q Consensus 467 V~v~~~~~~~~~~aW~GgSIlasL~~f~~~wITr~eYeE~G~~i~~rk~-~~~ 518 (532)
|+|.. +.+|.+++|+||||||++++|+++||||+||+|+|+++++||| |+.
T Consensus 365 v~v~~-~~~~~~~~w~Ggsilasl~~f~~~~itk~ey~e~G~~~~~~~~~f~~ 416 (418)
T 1k8k_A 365 VQVIT-HHMQRYAVWFGGSMLASTPEFYQVCHTKKDYEEIGPSICRHNPVFGV 416 (418)
T ss_dssp CCEEC-CTTCTTHHHHHHHHHTTSHHHHHHSEEHHHHHHHCGGGGGCCCCCSC
T ss_pred EEEeC-CCccccceeHhHHHHHcCccHhheEEEHHHHhhhCHHHHhhhccccC
Confidence 56664 4589999999999999999999999999999999999999965 543
No 8
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A
Probab=99.92 E-value=9.4e-25 Score=225.29 Aligned_cols=276 Identities=16% Similarity=0.153 Sum_probs=196.1
Q ss_pred cceEEccccccCCCC--CCceEecceeCCeeeecCCCCcccCHHHHHHHHHHHhhhhcCCC-CCCCCccceEEecCCCCC
Q 009546 110 REFICGEEALRVSPT--EPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIP-RSERNLYSAILVLPESFD 186 (532)
Q Consensus 110 ~~~~vG~ea~~~~~~--~~~~l~~Pi~~G~i~~~~~~~~q~dwd~le~iw~~i~~~~L~i~-~~e~~~~~~Vlv~e~~~~ 186 (532)
+.++||++|.....+ ....+.+|+++|.+. +|+.++.+|.++|.+..... ..+. .++++.|.+.
T Consensus 40 ~~~~vG~~A~~~~~~~~~~~~~~~p~~~g~i~---------~~~~~~~i~~~~l~~~~~~~~~~~~----~~vitvP~~~ 106 (344)
T 1jce_A 40 EILKVGLEAKNMIGKTPATIKAIRPMRDGVIA---------DYTVALVMLRYFINKAKGGMNLFKP----RVVIGVPIGI 106 (344)
T ss_dssp CEEEESHHHHTTTTCCCTTEEEECCEETTEES---------SHHHHHHHHHHHHHHHHTSCCSCCC----EEEEEECTTC
T ss_pred cEEEEcHHHHHhcccCCCCeEEEecCCCCeeC---------ChHHHHHHHHHHHHHHhhccccCCC----eEEEEECCCC
Confidence 457899999875422 467788999999998 99999999999995432322 2233 5777766544
Q ss_pred hHHHHH-HHHHHHHhcCCCEEEEeehhhHhhhhcCC-----ceEEEEeeCCCcEEEEEeeCCeeccCCcEEecchHHHHH
Q 009546 187 NREIKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDIS 260 (532)
Q Consensus 187 ~~~~rk-l~eilFE~~~~psv~~~~~avlalya~G~-----~tglVVDiG~~~T~VvpV~dG~vl~~s~~~~~~GG~~lt 260 (532)
+...|+ +.+ ++|..|++.+.++.++++|++++|. .+.+|||+|+++|+|+++..|.++. ....++||+++|
T Consensus 107 ~~~~r~~~~~-a~~~aG~~~~~li~ep~Aaa~~~~~~~~~~~~~lVvDiGggttdvsv~~~~~~~~--~~~~~lGG~~id 183 (344)
T 1jce_A 107 TDVERRAILD-AGLEAGASKVFLIEEPMAAAIGSNLNVEEPSGNMVVDIGGGTTEVAVISLGSIVT--WESIRIAGDEMD 183 (344)
T ss_dssp CHHHHHHHHH-HHHHTTCSEEEEEEHHHHHHHHTTCCTTSSSCEEEEEECSSCEEEEEEETTEEEE--EEEESCSHHHHH
T ss_pred CHHHHHHHHH-HHHHcCCCeEeccCCHHHHHHhcCCCCCCCceEEEEEeCCCeEEEEEEEcCCEEe--eCCCCccChhHH
Confidence 444455 555 6899999999999999999999986 5899999999999999999998774 467899999999
Q ss_pred HHHHHHHHhcCCCCCcccccccccchHHHHHHHHHHceeccCCccchhhhhcccc---CCCCCCC-ceeeeeeccCCCCC
Q 009546 261 RCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYE---DGMPPGS-HKTRLIALNVPPMG 336 (532)
Q Consensus 261 ~~L~~lL~~~~~~p~~~~~~l~~~~d~~~~~~iKe~~c~v~~~e~~~~~~~~~y~---~~~p~~~-~k~~~~~~~~~P~~ 336 (532)
+.|.+.+..+. .+ ..+...++++|+++|+........ ...++ ..+.++. ....+..
T Consensus 184 ~~l~~~l~~~~--------~~--~~~~~~ae~~K~~l~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~i~~------- 243 (344)
T 1jce_A 184 EAIVQYVRETY--------RV--AIGERTAERVKIEIGNVFPSKEND---ELETTVSGIDLSTGLPRKLTLKG------- 243 (344)
T ss_dssp HHHHHHHHHHH--------CE--ECCHHHHHHHHHHHCBCSCCHHHH---HCEEEEEEEETTTTEEEEEEEEH-------
T ss_pred HHHHHHHHHHh--------Cc--ccCHHHHHHHHHHHhccCccccCC---cceEEEeccccCCCCceeEEEeH-------
Confidence 99998886541 11 234678999999999875421000 00000 0000110 0000000
Q ss_pred CCCCcccCCCCCCCCCCCCCCCccccccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHH
Q 009546 337 LFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTS 416 (532)
Q Consensus 337 lf~p~~~~~e~~~~p~~~~~~d~ed~l~d~~~~~~~eR~~~~E~LFp~~~g~~~~~~~~~~~~~~~~~~~~~gL~e~I~~ 416 (532)
+++ +.+|.+ ....+.+.|.+
T Consensus 244 ------------------------------------~~~---~~~~~~---------------------~~~~i~~~i~~ 263 (344)
T 1jce_A 244 ------------------------------------GEV---REALRS---------------------VVVAIVESVRT 263 (344)
T ss_dssp ------------------------------------HHH---HHHTHH---------------------HHHHHHHHHHH
T ss_pred ------------------------------------HHH---HHHHHH---------------------HHHHHHHHHHH
Confidence 000 012200 11268899999
Q ss_pred HHhcCCChHHHHHhh-hCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCccceEeceeeeec-ccCcc
Q 009546 417 SILSTGRIDLQRKLF-CSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGI-LDFGR 494 (532)
Q Consensus 417 sI~~~~~~d~r~~L~-~NIvL~GG~S~i~Gf~eRL~~EL~~~~p~~~~~~~V~v~~~~~~~~~~aW~GgSIlas-L~~f~ 494 (532)
+|.++ +.++++.++ ++|+|+||+|++|||.++|++++.. +|.+. .+|.+++|+|+++++. +++|+
T Consensus 264 ~l~~~-~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~~~~---------~v~~~---~~p~~ava~Gaa~~a~~~~~~~ 330 (344)
T 1jce_A 264 TLEKT-PPELVSDIIERGIFLTGGGSLLRGLDTLLQKETGI---------SVIRS---EEPLTAVAKGAGMVLDKVNILK 330 (344)
T ss_dssp HHHTS-CHHHHHHHHHHCEEEESGGGCSBTHHHHHHHHHSS---------CEEEC---SSTTTHHHHHHHHGGGCHHHHT
T ss_pred HHHhC-CchhccchhhCcEEEECccccchHHHHHHHHHHCC---------Ccccc---CChHHHHHHHHHHHHhChHHHH
Confidence 99998 888888888 7999999999999999999999841 24443 4778999999999998 46664
No 9
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}
Probab=99.72 E-value=8.6e-18 Score=167.22 Aligned_cols=214 Identities=18% Similarity=0.155 Sum_probs=157.5
Q ss_pred ecceeCCeeeecCCCCcccCHHHHHHHHHHHhhhhcCCCCCCCCccceEEecCCCCChHHHHHHHHHHHHhcCCCEEEEe
Q 009546 130 HRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVH 209 (532)
Q Consensus 130 ~~Pi~~G~i~~~~~~~~q~dwd~le~iw~~i~~~~L~i~~~e~~~~~~Vlv~e~~~~~~~~rkl~eilFE~~~~psv~~~ 209 (532)
..|+++|.+. ||+.++.+|++++.........+.. .++++.|.......++.++.+++.+|++...+.
T Consensus 59 ~~~l~~g~i~---------d~~~~~~~l~~~~~~~~~~~~~~~~---~~v~tvp~~~~~~~~~~~~~~~~~~g~~~~~i~ 126 (272)
T 3h1q_A 59 ASVVKDGLVV---------DYIGAIQIVRELKAKVERLLGSELF---QAATAIPPGTVGRNAEACGHVVAGAGLELVTLV 126 (272)
T ss_dssp CCCCBTTBCT---------THHHHHHHHHHHHHHHHHHSSSCCC---EEEEECCSCC---CTTHHHHHHHHTTCEEEEEE
T ss_pred ccccCCCEEE---------cHHHHHHHHHHHHHHHHHhcCCccC---eEEEEcCCCCCHHHHHHHHHHHHHcCCeeeecc
Confidence 4689999998 9999999999998643222112222 355555554333334577889999999999999
Q ss_pred ehhhHhhhhcCCceEEEEeeCCCcEEEEEeeCCeeccCCcEEecchHHHHHHHHHHHHHhcCCCCCcccccccccchHHH
Q 009546 210 QEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLM 289 (532)
Q Consensus 210 ~~avlalya~G~~tglVVDiG~~~T~VvpV~dG~vl~~s~~~~~~GG~~lt~~L~~lL~~~~~~p~~~~~~l~~~~d~~~ 289 (532)
.++.++++++|..+++|||+|+++|.++++.+|.++. ...+++||.++++.+.+.+. .+.+.
T Consensus 127 ~e~~A~a~~~~~~~~~viDiGggst~~~~~~~g~~~~--~~~~~~Gg~~~~~~l~~~l~----------------~~~~~ 188 (272)
T 3h1q_A 127 DEPVAAARALGINDGIVVDIGGGTTGIAVIEKGKITA--TFDEPTGGTHLSLVLAGSYK----------------IPFEE 188 (272)
T ss_dssp CHHHHHHHHHTCSSEEEEEECSSCEEEEEEETTEEEE--ECCBSCCHHHHHHHHHHHHT----------------CCHHH
T ss_pred cHHHHHHHHHcCCCEEEEEECCCcEEEEEEECCEEEE--EecCCCcHHHHHHHHHHHhC----------------CCHHH
Confidence 9999999999999999999999999999999999874 36789999999999987763 23467
Q ss_pred HHHHHHHceeccCCccchhhhhccccCCCCCCCceeeeeeccCCCCCCCCCcccCCCCCCCCCCCCCCCccccccCCccc
Q 009546 290 LNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHT 369 (532)
Q Consensus 290 ~~~iKe~~c~v~~~e~~~~~~~~~y~~~~p~~~~k~~~~~~~~~P~~lf~p~~~~~e~~~~p~~~~~~d~ed~l~d~~~~ 369 (532)
++++|++++.-. + +. + ++
T Consensus 189 ae~~k~~~~~~~--~---------~~-------------~------------~~-------------------------- 206 (272)
T 3h1q_A 189 AETIKKDFSRHR--E---------IM-------------R------------VV-------------------------- 206 (272)
T ss_dssp HHHHHHSSTTHH--H---------HH-------------H------------HH--------------------------
T ss_pred HHHHHHhcCCHH--H---------HH-------------H------------HH--------------------------
Confidence 888998765100 0 00 0 00
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHHHHhcCCChHHHHHhhhCeEEEcCCCCcCChHHH
Q 009546 370 DFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPA 449 (532)
Q Consensus 370 ~~~eR~~~~E~LFp~~~g~~~~~~~~~~~~~~~~~~~~~gL~e~I~~sI~~~~~~d~r~~L~~NIvL~GG~S~i~Gf~eR 449 (532)
+ .-...+.+.|.+++.++ + ...+|+|+||+|++|||.++
T Consensus 207 ---------~-------------------------~~~~~i~~~i~~~l~~~-~------~~~~ivL~GG~a~~~~l~~~ 245 (272)
T 3h1q_A 207 ---------R-------------------------PVIEKMALIVKEVIKNY-D------QTLPVYVVGGTAYLTGFSEE 245 (272)
T ss_dssp ---------H-------------------------HHHHHHHHHHHHHTTTS-C------SSCCEEEESGGGGSTTHHHH
T ss_pred ---------H-------------------------HHHHHHHHHHHHHHHhc-C------CCCEEEEECCccchhhHHHH
Confidence 0 00124778888888877 4 23599999999999999999
Q ss_pred HHHHHhhhCCCCCCcceEEEcCCCCCCccceEeceeeee
Q 009546 450 VEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLG 488 (532)
Q Consensus 450 L~~EL~~~~p~~~~~~~V~v~~~~~~~~~~aW~GgSIla 488 (532)
|++++.. +|.+ +.+|.+++|+|++++|
T Consensus 246 l~~~l~~---------~v~~---~~~p~~a~a~Gaal~a 272 (272)
T 3h1q_A 246 FSRFLGK---------EVQV---PIHPLLVTPLGIALFG 272 (272)
T ss_dssp HHHHHSS---------CCBC---CSSGGGHHHHHHHTTC
T ss_pred HHHHhCC---------Cccc---cCChHHHHHHHHHhcC
Confidence 9999842 1222 3578999999998765
No 10
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}
Probab=99.50 E-value=9.8e-15 Score=158.37 Aligned_cols=224 Identities=17% Similarity=0.163 Sum_probs=136.5
Q ss_pred eEEecCC-CCChHHHHHHHHHHHHhcCCCEEEEeehhhHhhhhcCC-----ceEEEEeeCCCcEEEEEee--CCee-ccC
Q 009546 177 AILVLPE-SFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVE--DGVA-LPN 247 (532)
Q Consensus 177 ~Vlv~e~-~~~~~~~rkl~eilFE~~~~psv~~~~~avlalya~G~-----~tglVVDiG~~~T~VvpV~--dG~v-l~~ 247 (532)
.++++.| .|+..+.+.+.+ +++..|++.+.++.++.+|++++|. .+.+|||+|+++|.|+.+. +|.. +..
T Consensus 111 ~~VitvPa~~~~~qr~a~~~-a~~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vlV~D~GgGT~Dvsv~~~~~g~~~v~a 189 (509)
T 2v7y_A 111 RAVITVPAYFNDAQRQATKD-AGRIAGLEVERIINEPTAAALAYGLDKEEDQTILVYDLGGGTFDVSILELGDGVFEVKA 189 (509)
T ss_dssp EEEEEECTTCCHHHHHHHHH-HHHHTTCEEEEEEEHHHHHHHHTTGGGSCSEEEEEEEECSSCEEEEEEEEETTEEEEEE
T ss_pred eEEEEECCCCCHHHHHHHHH-HHHHcCCCeEEEecCHHHHHHHHhhccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEEE
Confidence 3555544 556555333554 5799999999999999999999986 3789999999999999775 4643 222
Q ss_pred CcEEecchHHHHHHHHHHHHHhcCCCCCcccccccc-----cchHHHHHHHHHHceeccCCccchhhhhccccCCCCCCC
Q 009546 248 TEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTK-----AMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGS 322 (532)
Q Consensus 248 s~~~~~~GG~~lt~~L~~lL~~~~~~p~~~~~~l~~-----~~d~~~~~~iKe~~c~v~~~e~~~~~~~~~y~~~~p~~~ 322 (532)
+....++||+++++.|.+.+..+-.- .+ ..++.. ..-...++++|+.++......+.. ...+. .++|.
T Consensus 190 ~~g~~~lGG~d~d~~l~~~l~~~~~~-~~-~~~~~~~~~~~~~l~~~aE~~K~~ls~~~~~~i~l---~~~~~--~~~G~ 262 (509)
T 2v7y_A 190 TAGDNHLGGDDFDQVIIDYLVNQFKQ-EH-GIDLSKDKMALQRLKDAAEKAKKELSGVTQTQISL---PFISA--NENGP 262 (509)
T ss_dssp EEEETTCSHHHHHHHHHHHHHHHHHH-HH-SCCGGGCHHHHHHHHHHHHHHHHHTTTCSEEEEEE---EEEEE--ETTEE
T ss_pred ecCCCCcCHHHHHHHHHHHHHHHHHH-Hh-CCCcccCHHHHHHHHHHHHHHHHhcCCCCcEEEEE---ecccc--CCCCC
Confidence 33456899999999998776542000 00 001111 012467888999887543211100 00000 00010
Q ss_pred --ceeeeeeccCCCCCCCCCcccCCCCCCCCCCCCCCCccccccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCC
Q 009546 323 --HKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTT 400 (532)
Q Consensus 323 --~k~~~~~~~~~P~~lf~p~~~~~e~~~~p~~~~~~d~ed~l~d~~~~~~~eR~~~~E~LFp~~~g~~~~~~~~~~~~~ 400 (532)
....+. |-.. |.+|.+
T Consensus 263 ~~~~~~it---------------------------------------------r~~f-e~l~~~---------------- 280 (509)
T 2v7y_A 263 LHLEMTLT---------------------------------------------RAKF-EELSAH---------------- 280 (509)
T ss_dssp EEEEEEEE---------------------------------------------HHHH-HHHTHH----------------
T ss_pred eeEEEEEE---------------------------------------------HHHH-HHHHHH----------------
Confidence 000000 0000 112200
Q ss_pred CCCcccCCCHHHHHHHHHhcCCChHHHHHhhhCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCccce
Q 009546 401 KPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVS 480 (532)
Q Consensus 401 ~~~~~~~~gL~e~I~~sI~~~~~~d~r~~L~~NIvL~GG~S~i~Gf~eRL~~EL~~~~p~~~~~~~V~v~~~~~~~~~~a 480 (532)
-...+.+.|.+++..+ . +.....++|+|+||+|++|++.++|++++... +. ...+|..++
T Consensus 281 -----~~~~i~~~i~~~L~~a-~--~~~~~i~~VvLvGG~s~~p~v~~~l~~~f~~~---------~~---~~~~p~~aV 340 (509)
T 2v7y_A 281 -----LVERTMGPVRQALQDA-G--LTPADIDKVILVGGSTRIPAVQEAIKRELGKE---------PH---KGVNPDEVV 340 (509)
T ss_dssp -----HHHTTHHHHHHHHHHH-T--CCGGGCSEEEEESGGGGCHHHHHHHHHHHSSC---------CB---CCSCTTTHH
T ss_pred -----HHHHHHHHHHHHHHHc-C--CChhHCcEEEEECCcccChHHHHHHHHHhCCC---------cC---cCCCchhhh
Confidence 0124677888888776 3 23456689999999999999999999988421 11 124678999
Q ss_pred Eeceeeeecc
Q 009546 481 WKGGAVLGIL 490 (532)
Q Consensus 481 W~GgSIlasL 490 (532)
|+||+++|..
T Consensus 341 a~Gaa~~a~~ 350 (509)
T 2v7y_A 341 AIGAAIQGGV 350 (509)
T ss_dssp HHHHHHHHHH
T ss_pred HhhHHHHHHH
Confidence 9999999863
No 11
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1
Probab=99.48 E-value=3.9e-14 Score=147.75 Aligned_cols=223 Identities=15% Similarity=0.103 Sum_probs=137.2
Q ss_pred EEecCC-CCChHHHHHHHHHHHHhcCCCEEEEeehhhHhhhhcCCc------eEEEEeeCCCcEEEEEeeCC------ee
Q 009546 178 ILVLPE-SFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS------TACVVNMGAQVTSVICVEDG------VA 244 (532)
Q Consensus 178 Vlv~e~-~~~~~~~rkl~eilFE~~~~psv~~~~~avlalya~G~~------tglVVDiG~~~T~VvpV~dG------~v 244 (532)
++++.| .|+..+.+.+.+ +++..|++.+.++.++++|++++|.. +.+|||+|+++|+++.+..+ ..
T Consensus 138 ~vitvP~~~~~~~r~~~~~-a~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lVvD~Gggttdvsv~~~~~~~~~~~~ 216 (383)
T 1dkg_D 138 AVITVPAYFNDAQRQATKD-AGRIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTF 216 (383)
T ss_dssp EEECBCTTCCHHHHHHHHH-HHHHTTCEESCCCBHHHHHHHHHTCCC-CCEEEEEEEEECSSCEEEEEEEEEC----CCC
T ss_pred EEEEECCCCCHHHHHHHHH-HHHHcCCceEEEeccHHHHHHHHHhccCCCCcEEEEEEcCCCeEEEEEEEEEecCCCCeE
Confidence 555545 556555333555 57999999999999999999988753 68999999999999977643 22
Q ss_pred cc-CCcEEecchHHHHHHHHHHHHHhcCCCCCcccccccc-----cchHHHHHHHHHHceeccCCccchhhhhccccCCC
Q 009546 245 LP-NTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTK-----AMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGM 318 (532)
Q Consensus 245 l~-~s~~~~~~GG~~lt~~L~~lL~~~~~~p~~~~~~l~~-----~~d~~~~~~iKe~~c~v~~~e~~~~~~~~~y~~~~ 318 (532)
.. ......++||+++|+.|.+++..+-.- .+ ..++.. ..-+..++++|+.++......+.. ...+. .
T Consensus 217 ~v~~~~~~~~lGG~~id~~l~~~l~~~~~~-~~-~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~i~i---~~~~~--~ 289 (383)
T 1dkg_D 217 EVLATNGDTHLGGEDFDSRLINYLVEEFKK-DQ-GIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNL---PYITA--D 289 (383)
T ss_dssp EEEEEEEESSCSHHHHHHHHHHHHHHHHHH-HH-CCCSTTCHHHHHHHHHHHHHHHHHTTSSSEEEEEE---EEEEE--E
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHHHHH-Hh-CCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEE---ecccc--c
Confidence 11 122346899999999998877543000 00 001110 012467899999987653211100 00000 1
Q ss_pred CCCCc--eeeeeeccCCCCCCCCCcccCCCCCCCCCCCCCCCccccccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 009546 319 PPGSH--KTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYP 396 (532)
Q Consensus 319 p~~~~--k~~~~~~~~~P~~lf~p~~~~~e~~~~p~~~~~~d~ed~l~d~~~~~~~eR~~~~E~LFp~~~g~~~~~~~~~ 396 (532)
++|.. ...+. |-.. |.+|.+
T Consensus 290 ~~G~~~~~~~it---------------------------------------------~~~~-~~~~~~------------ 311 (383)
T 1dkg_D 290 ATGPKHMNIKVT---------------------------------------------RAKL-ESLVED------------ 311 (383)
T ss_dssp TTEEEEEEEEEE---------------------------------------------HHHH-HHHSHH------------
T ss_pred CCCCeeEEEEEe---------------------------------------------HHHH-HHHHHH------------
Confidence 11100 00000 0000 011200
Q ss_pred ccCCCCCcccCCCHHHHHHHHHhcCCChHHHHHhhhCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCC
Q 009546 397 VLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNP 476 (532)
Q Consensus 397 ~~~~~~~~~~~~gL~e~I~~sI~~~~~~d~r~~L~~NIvL~GG~S~i~Gf~eRL~~EL~~~~p~~~~~~~V~v~~~~~~~ 476 (532)
....+.++|.++|.++ .. .....++|+|+||+|++||+.++|++++.. ++.. +.+|
T Consensus 312 ---------~~~~i~~~i~~~l~~~-~~--~~~~i~~IvL~GG~s~~p~l~~~l~~~~~~---------~v~~---~~~p 367 (383)
T 1dkg_D 312 ---------LVNRSIELLKVALQDA-GL--SVSDIDDVILVGGQTRMPMVQKKVAEFFGK---------EPRK---DVNP 367 (383)
T ss_dssp ---------HHHHHHHHHHHHHHTT-TC--CTTTCCEEEEESGGGGSHHHHHHHHHHHSS---------CCBC---SSCT
T ss_pred ---------HHHHHHHHHHHHHHHc-CC--CHhhCCEEEEecCccccHHHHHHHHHHhCC---------CCCC---CcCh
Confidence 1125788888888887 42 345568999999999999999999999852 1111 3578
Q ss_pred ccceEeceeeeecc
Q 009546 477 TYVSWKGGAVLGIL 490 (532)
Q Consensus 477 ~~~aW~GgSIlasL 490 (532)
.+++|+||+++|.+
T Consensus 368 ~~ava~Gaa~~a~~ 381 (383)
T 1dkg_D 368 DEAVAIGAAVQGGV 381 (383)
T ss_dssp TTHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHh
Confidence 89999999999875
No 12
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP, chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae} PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Probab=99.41 E-value=2.9e-14 Score=148.97 Aligned_cols=90 Identities=19% Similarity=0.225 Sum_probs=66.3
Q ss_pred EEec-CCCCChHHHHHHHHHHHHhcCCCEEEEeehhhHhhhhcCCc------eEEEEeeCCCcEEEEEee--CCeeccCC
Q 009546 178 ILVL-PESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS------TACVVNMGAQVTSVICVE--DGVALPNT 248 (532)
Q Consensus 178 Vlv~-e~~~~~~~~rkl~eilFE~~~~psv~~~~~avlalya~G~~------tglVVDiG~~~T~VvpV~--dG~vl~~s 248 (532)
++++ |..|+..+ |+.+.-+++..|++.+.++.++.+|++++|.. +.+|||+|+++|.|+.+. +|..-..+
T Consensus 156 ~vitvP~~~~~~~-r~~~~~a~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~~~~ 234 (394)
T 3qfu_A 156 AVVTVPAYFNDAQ-RQATKDAGTIAGLNVLRIVNEPTAAAIAYGLDKSDKEHQIIVYDLGGGTFDVSLLSIENGVFEVQA 234 (394)
T ss_dssp EEEEECTTCCHHH-HHHHHHHHHHTTCEEEEEEEHHHHHHHHTTTTSCSSCEEEEEEEECSSCEEEEEEEEETTEEEEEE
T ss_pred EEEEECCCCCHHH-HHHHHHHHHHcCCceEEEecCHHHHHHHHhhccCCCCceEEEEEcCCCceeEEEEEEeCCEEEEEE
Confidence 5554 44566655 44444456999999999999999999999764 349999999999877664 55432222
Q ss_pred -cEEecchHHHHHHHHHHHHH
Q 009546 249 -EKTLPFGGEDISRCLLWTQR 268 (532)
Q Consensus 249 -~~~~~~GG~~lt~~L~~lL~ 268 (532)
....++||+++++.|.+.+.
T Consensus 235 ~~~~~~lGG~~~d~~l~~~l~ 255 (394)
T 3qfu_A 235 TSGDTHLGGEDFDYKIVRQLI 255 (394)
T ss_dssp EEEETTCSHHHHHHHHHHHHH
T ss_pred EcCCCCCChHHHHHHHHHHHH
Confidence 23378999999999987764
No 13
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...
Probab=99.31 E-value=2.8e-13 Score=142.28 Aligned_cols=90 Identities=18% Similarity=0.287 Sum_probs=67.3
Q ss_pred EEe-cCCCCChHHHHHHHHHHHHhcCCCEEEEeehhhHhhhhcCCce---------EEEEeeCCCcEEEEEee--CCee-
Q 009546 178 ILV-LPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLST---------ACVVNMGAQVTSVICVE--DGVA- 244 (532)
Q Consensus 178 Vlv-~e~~~~~~~~rkl~eilFE~~~~psv~~~~~avlalya~G~~t---------glVVDiG~~~T~VvpV~--dG~v- 244 (532)
+++ +|..|+..+ |+.+.-+++..|++.+.++.++.+|++++|... .+|||+|+++|.++.+. +|..
T Consensus 161 ~vitvPa~~~~~~-r~~~~~a~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~~vlV~D~GgGT~dvsv~~~~~~~~~ 239 (404)
T 3i33_A 161 AVITVPAYFNDSQ-RQATKDAGTITGLNVLRIINEPTAAAIAYGLDKKGCAGGEKNVLIFDLGGGTFDVSILTIEDGIFE 239 (404)
T ss_dssp EEEEECTTCCHHH-HHHHHHHHHHHTCEEEEEEEHHHHHHHHTTTTSSCSSSSCCEEEEEEECSSCEEEEEEEEETTEEE
T ss_pred EEEEECCCCCHHH-HHHHHHHHHHcCCCeEEEeccHHHHHHHHHhhcccccCCCceEEEEECCCCcEEEEEEEEeCCeEE
Confidence 455 555676665 444455689999999999999999999987543 49999999999998774 4432
Q ss_pred ccCCcEEecchHHHHHHHHHHHHH
Q 009546 245 LPNTEKTLPFGGEDISRCLLWTQR 268 (532)
Q Consensus 245 l~~s~~~~~~GG~~lt~~L~~lL~ 268 (532)
+.......++||+++++.|.+.+.
T Consensus 240 v~~~~~~~~lGG~~~d~~l~~~l~ 263 (404)
T 3i33_A 240 VKSTAGDTHLGGEDFDNRMVSHLA 263 (404)
T ss_dssp EEEEEEETTCSHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH
Confidence 222234478999999999987663
No 14
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}
Probab=99.07 E-value=1.6e-09 Score=112.50 Aligned_cols=89 Identities=20% Similarity=0.346 Sum_probs=70.8
Q ss_pred HHHHHhcCCCEEEEeehhhHhhhhcCC------c-eEEEEeeCCCcEEEEEeeCCeeccCCcEEecchHHHHHHHHHHHH
Q 009546 195 SIVLRDLRFASAVVHQEGLAAVFGNGL------S-TACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQ 267 (532)
Q Consensus 195 eilFE~~~~psv~~~~~avlalya~G~------~-tglVVDiG~~~T~VvpV~dG~vl~~s~~~~~~GG~~lt~~L~~lL 267 (532)
.-+++..|+.-..+..+++++++++|. . ..+|||+|+++|.|+.+.+|.++. ...+++||+++|+.+.+.+
T Consensus 157 ~~~~~~aGl~~~~i~~ep~Aaa~~~~~~~~~~~~~~~~vvDiGggttdi~i~~~g~~~~--~~~~~~GG~~i~~~i~~~~ 234 (377)
T 2ych_A 157 LEALRGAGLVPVVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLLRGDKPLA--VRVLTLSGKDFTEAIARSF 234 (377)
T ss_dssp HHHHHHTTCEEEEEEEHHHHTTGGGHHHHHTSTTCEEEEEEECSSCEEEEEEETTEEEE--EEEESCSHHHHHHHHHHHT
T ss_pred HHHHHHCCCceEEEecchHHHHHHHHhhcccccCCeEEEEEECCCcEEEEEEECCEEEE--EEeeechHHHHHHHHHHHh
Confidence 346789999999999999999988752 3 359999999999999999998874 4678999999999987632
Q ss_pred HhcCCCCCcccccccccchHHHHHHHHHHceecc
Q 009546 268 RHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIK 301 (532)
Q Consensus 268 ~~~~~~p~~~~~~l~~~~d~~~~~~iKe~~c~v~ 301 (532)
+ .+.+.++++|+++++..
T Consensus 235 ---~-------------~~~~~aE~~K~~~~~~~ 252 (377)
T 2ych_A 235 ---N-------------LDLLAAEEVKRTYGMAT 252 (377)
T ss_dssp ---T-------------CCHHHHHHHHHHTC---
T ss_pred ---C-------------CCHHHHHHHHhhccccc
Confidence 1 23567899999888654
No 15
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Probab=98.95 E-value=2.4e-09 Score=117.06 Aligned_cols=90 Identities=17% Similarity=0.259 Sum_probs=69.0
Q ss_pred EEecCCCCChHHHHHHHHHHHHhcCCCEEEEeehhhHhhhhcCC-------ceEEEEeeCCCcEEEEEee--CCee-ccC
Q 009546 178 ILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-------STACVVNMGAQVTSVICVE--DGVA-LPN 247 (532)
Q Consensus 178 Vlv~e~~~~~~~~rkl~eilFE~~~~psv~~~~~avlalya~G~-------~tglVVDiG~~~T~VvpV~--dG~v-l~~ 247 (532)
|+-+|..|+..+ |+.+.-+++..|++.+.++.++.+|++++|. .+.+|+|+|++++.|+.+. +|.. +..
T Consensus 143 VitVPa~f~~~q-r~a~~~A~~~AGl~~~~li~EP~AAAlay~~~~~~~~~~~vlV~D~GgGT~Dvsv~~~~~g~~~v~a 221 (554)
T 1yuw_A 143 VVTVPAYFNDSQ-RQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIAAGIFEVKS 221 (554)
T ss_dssp EEEECTTCCHHH-HHHHHHHHHTTTCEEEEEEEHHHHHHHHTTCSTTCSSCEEEEEEEECSSCEEEEEEEEETTEEEEEE
T ss_pred EEEECCCCCHHH-HHHHHHHHHHcCCCeEEEeCcHHHHHHHHHhhccCCCCcEEEEEEcCCCeEEEEEEEEcCCcEEEEE
Confidence 444555677655 4444557889999999999999999998874 3689999999999999876 6754 222
Q ss_pred CcEEecchHHHHHHHHHHHHH
Q 009546 248 TEKTLPFGGEDISRCLLWTQR 268 (532)
Q Consensus 248 s~~~~~~GG~~lt~~L~~lL~ 268 (532)
.....++||+++++.|.+.+.
T Consensus 222 ~~g~~~lGG~d~d~~l~~~l~ 242 (554)
T 1yuw_A 222 TAGDTHLGGEDFDNRMVNHFI 242 (554)
T ss_dssp EEEETTCSHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHH
Confidence 334568999999999887664
No 16
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=98.86 E-value=2.2e-09 Score=118.65 Aligned_cols=92 Identities=21% Similarity=0.272 Sum_probs=68.2
Q ss_pred eEEecCCCCChHHHHHHHHHHHHhcCCCEEEEeehhhHhhhhcCCc------eEEEEeeCCCcEEEEEee------CCee
Q 009546 177 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS------TACVVNMGAQVTSVICVE------DGVA 244 (532)
Q Consensus 177 ~Vlv~e~~~~~~~~rkl~eilFE~~~~psv~~~~~avlalya~G~~------tglVVDiG~~~T~VvpV~------dG~v 244 (532)
.|+-+|..|+..+ |+.+.-+.+..|+..+.++.++.+|++++|.. +.+|+|+|++++.|+.+. +|..
T Consensus 138 ~VitVPa~f~d~q-r~a~~~A~~~AGl~v~~li~EP~AAAlay~l~~~~~~~~vlV~DlGGGT~Dvsi~~~~~~~~~g~~ 216 (605)
T 2kho_A 138 AVITVPAYFNDAQ-RQATKDAGRIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTF 216 (605)
T ss_dssp EEEEECTTCCHHH-HHHHHHHHHTTTCEEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEECSSCEEEEEEEEECTTTSCEE
T ss_pred EEEEECCCCCHHH-HHHHHHHHHHcCCceEEEecCHHHHHHHhhhcccCCCCEEEEEECCCCeEEEEEEEEEecCCCCeE
Confidence 3555566677655 45555567889999999999999999988753 479999999999998886 3543
Q ss_pred c-cCCcEEecchHHHHHHHHHHHHHh
Q 009546 245 L-PNTEKTLPFGGEDISRCLLWTQRH 269 (532)
Q Consensus 245 l-~~s~~~~~~GG~~lt~~L~~lL~~ 269 (532)
- ..+....++||+++++.|.+.+..
T Consensus 217 ~v~a~~gd~~lGG~d~D~~l~~~l~~ 242 (605)
T 2kho_A 217 EVLATNGDTHLGGEDFDSRLINYLVE 242 (605)
T ss_dssp EEEEEEEESSCSGGGTHHHHHHHHHH
T ss_pred EEEEECCCCCccHHHHHHHHHHHHHH
Confidence 1 112234689999999998876643
No 17
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=98.85 E-value=8.6e-09 Score=115.10 Aligned_cols=91 Identities=14% Similarity=0.193 Sum_probs=68.3
Q ss_pred eEEecCCCCChHHHHHHHHHHHHhcCCCEEEEeehhhHhhhhcCC------------ceEEEEeeCCCcEEEEEee--CC
Q 009546 177 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL------------STACVVNMGAQVTSVICVE--DG 242 (532)
Q Consensus 177 ~Vlv~e~~~~~~~~rkl~eilFE~~~~psv~~~~~avlalya~G~------------~tglVVDiG~~~T~VvpV~--dG 242 (532)
.|+-+|..|+..+ |+.+.-+.+..|+..+.++.++.+|++++|. .+.+|+|+|+++|.|+-+. +|
T Consensus 141 ~VITVPa~f~~~q-R~a~~~Aa~~AGl~~~~li~EP~AAAlaygl~~~~~~~~~~~~~~vlV~DlGGGT~Dvsv~~~~~g 219 (675)
T 3d2f_A 141 VCIAVPPWYTEEQ-RYNIADAARIAGLNPVRIVNDVTAAGVSYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAFKKG 219 (675)
T ss_dssp EEEEECTTCCHHH-HHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHCSCCCCSSSCCEEEEEEEECSSCEEEEEEEEETT
T ss_pred EEEEECCCCCHHH-HHHHHHHHHHcCCceEEEEcchHHHHHHHhhhccccccccCCCcEEEEEEcCCCcEEEEEEEecCC
Confidence 3444565677655 4444456788999999999999999988753 3579999999999998875 67
Q ss_pred ee-ccCCcEEecchHHHHHHHHHHHHH
Q 009546 243 VA-LPNTEKTLPFGGEDISRCLLWTQR 268 (532)
Q Consensus 243 ~v-l~~s~~~~~~GG~~lt~~L~~lL~ 268 (532)
.. +..+....++||+++++.|.+.+.
T Consensus 220 ~~~V~a~~gd~~lGG~d~D~~l~~~l~ 246 (675)
T 3d2f_A 220 QLKVLGTACDKHFGGRDFDLAITEHFA 246 (675)
T ss_dssp EEEEEEEEEETTCSHHHHHHHHHHHHH
T ss_pred eEEEEEEcCCCCccHHHHHHHHHHHHH
Confidence 54 222233468999999999987664
No 18
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}
Probab=98.73 E-value=1.8e-08 Score=105.81 Aligned_cols=92 Identities=17% Similarity=0.269 Sum_probs=68.1
Q ss_pred eEEecCCCCChHHHHHHHHHHHHhcCCCEEEEeehhhHhhhhcCCc--------eEEEEeeCCCcEEEEEe--eCCeecc
Q 009546 177 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS--------TACVVNMGAQVTSVICV--EDGVALP 246 (532)
Q Consensus 177 ~Vlv~e~~~~~~~~rkl~eilFE~~~~psv~~~~~avlalya~G~~--------tglVVDiG~~~T~VvpV--~dG~vl~ 246 (532)
.|+-+|..|+..+ |+.+.-..+..|+..+.++.++.+|+++++.. +.+|||+|+++|.++-+ .+|..--
T Consensus 153 ~vitvPa~~~~~~-r~~~~~a~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~vlv~D~GgGT~dvsv~~~~~~~~~v 231 (409)
T 4gni_A 153 AVITIPTNFTEKQ-KAALIAAAAAADLEVLQLISEPAAAVLAYDARPEATISDKIIVVADLGGSRSDVTVLASRSGMYTI 231 (409)
T ss_dssp EEEEECTTCCHHH-HHHHHHHHHHTTCEEEEEEEHHHHHHHHTTC------CCEEEEEEEECSSCEEEEEEEEETTEEEE
T ss_pred EEEEECCCCCHHH-HHHHHHHHHHcCCCeEEEEcCHHHHHHHHhcccccCCCCCEEEEEECCCCceEEEEEEEeCCeEEE
Confidence 3555666788765 34555567888999999999999999999864 48999999999999875 3442211
Q ss_pred -CCcEEecchHHHHHHHHHHHHHh
Q 009546 247 -NTEKTLPFGGEDISRCLLWTQRH 269 (532)
Q Consensus 247 -~s~~~~~~GG~~lt~~L~~lL~~ 269 (532)
......++||+++++.|.+.+..
T Consensus 232 ~~~~~~~~lGG~~~d~~i~~~l~~ 255 (409)
T 4gni_A 232 LATVHDYEYHGIALDKVLIDHFSK 255 (409)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHH
T ss_pred EEecCCCCcCHHHHHHHHHHHHHH
Confidence 11224789999999999877653
No 19
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A*
Probab=98.72 E-value=3e-08 Score=104.68 Aligned_cols=91 Identities=18% Similarity=0.175 Sum_probs=74.2
Q ss_pred HHHHHHHHhcCCCEEEEeehhhHhhhhcCCc-----eEEEEeeCCCcEEEEEeeCCeeccCCcEEecchHHHHHHHHHHH
Q 009546 192 EMLSIVLRDLRFASAVVHQEGLAAVFGNGLS-----TACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWT 266 (532)
Q Consensus 192 kl~eilFE~~~~psv~~~~~avlalya~G~~-----tglVVDiG~~~T~VvpV~dG~vl~~s~~~~~~GG~~lt~~L~~l 266 (532)
+-..-+++..|+.-..+..++++++++++.. ..+|||+|+++|+|+-+.+|.+.. ...+++||+++|+.+.+.
T Consensus 171 ~n~~~~~~~AGL~v~~lv~ep~Aaa~a~l~~~~~~~gv~vvDiGggttdisi~~~g~~~~--~~~i~~GG~~it~dIa~~ 248 (419)
T 4a2a_A 171 EMFYNFLQDTVKSPFQLKSSLVSTAEGVLTTPEKDRGVVVVNLGYNFTGLIAYKNGVPIK--ISYVPVGMKHVIKDVSAV 248 (419)
T ss_dssp HHHHHHHHTTSCSCEEEEEHHHHHHHHHCCHHHHHHCEEEEEECSSSEEEEEEETTEEEE--EEEESCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcEEEEEEHHHHHHHHhhccccccCCEEEEEECCCcEEEEEEECCEEEE--EEecccHHHHHHHHHHHH
Confidence 3333457899999999999999999988753 589999999999999999998875 357899999999998865
Q ss_pred HHhcCCCCCcccccccccchHHHHHHHHHHceec
Q 009546 267 QRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEI 300 (532)
Q Consensus 267 L~~~~~~p~~~~~~l~~~~d~~~~~~iKe~~c~v 300 (532)
+. ...+.++++|.++...
T Consensus 249 l~----------------~~~~~AE~iK~~~g~a 266 (419)
T 4a2a_A 249 LD----------------TSFEESERLIITHGNA 266 (419)
T ss_dssp HT----------------CCHHHHHHHHHHHCCS
T ss_pred HC----------------CCHHHHHHHHHHhccC
Confidence 42 2346799999887643
No 20
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=98.46 E-value=1.1e-06 Score=96.95 Aligned_cols=92 Identities=21% Similarity=0.272 Sum_probs=67.4
Q ss_pred eEEecCCCCChHHHHHHHHHHHHhcCCCEEEEeehhhHhhhhcCC------ceEEEEeeCCCcEEEEEeeCCe-----ec
Q 009546 177 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL------STACVVNMGAQVTSVICVEDGV-----AL 245 (532)
Q Consensus 177 ~Vlv~e~~~~~~~~rkl~eilFE~~~~psv~~~~~avlalya~G~------~tglVVDiG~~~T~VvpV~dG~-----vl 245 (532)
.|+-+|..|+..+ |+.+.-+.+..|+.-+.++.++.+|++++|. .+-+|+|+|++++.|+-+.-+. .+
T Consensus 138 ~VITVPa~f~~~q-r~a~~~Aa~~AGl~v~~li~EP~AAAlaygl~~~~~~~~vlV~DlGGGT~Dvsi~~~~~~~~~~~~ 216 (605)
T 4b9q_A 138 AVITVPAYFNDAQ-RQATKDAGRIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGAFDISIIEIDEVDGEKTF 216 (605)
T ss_dssp EEEEECTTCCHHH-HHHHHHHHHHTTCEEEEEEEHHHHHHHHHHTTSCCSSEEEEEEEECSSCEEEEEEEEEESSSCEEE
T ss_pred EEEEECCCCCHHH-HHHHHHHHHHcCCceEEEeCcHHHHHHHhhhhccCCCCEEEEEECCCCeEEEEEEEEecCCCCceE
Confidence 3555566677655 4566667888999999999999999998874 3569999999999998775332 11
Q ss_pred --cCCcEEecchHHHHHHHHHHHHHh
Q 009546 246 --PNTEKTLPFGGEDISRCLLWTQRH 269 (532)
Q Consensus 246 --~~s~~~~~~GG~~lt~~L~~lL~~ 269 (532)
..+..-..+||+++++.|.+.+..
T Consensus 217 evla~~gd~~lGG~d~D~~l~~~l~~ 242 (605)
T 4b9q_A 217 EVLATNGDTHLGGEDFDSRLINYLVE 242 (605)
T ss_dssp EEEEEEEETTCSHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCcChHHHHHHHHHHHHH
Confidence 112223578999999998876653
No 21
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*
Probab=98.37 E-value=9.8e-07 Score=90.66 Aligned_cols=138 Identities=14% Similarity=0.164 Sum_probs=94.1
Q ss_pred CcceEEccccccCCCCCCceEecceeCCeeeecCCCCcccCHHHHHHHHHHHhhhhcCCCCCCCCccceEE--ecCCC-C
Q 009546 109 FREFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAIL--VLPES-F 185 (532)
Q Consensus 109 ~~~~~vG~ea~~~~~~~~~~l~~Pi~~G~i~~~~~~~~q~dwd~le~iw~~i~~~~L~i~~~e~~~~~~Vl--v~e~~-~ 185 (532)
.+.++||++|. +|+..|.+. + +..+.++.+.+.+...-.....+ .++ ++-|. +
T Consensus 77 ~~~~~vG~~A~-----------~~l~~~~~~---------~-~~~~~ll~~~l~~~~~~~~~~~~---~vvL~i~vP~~~ 132 (346)
T 2fsj_A 77 YGKYASGNNIR-----------VPQGDGRLA---------S-KEAFPLIAAALWESGIHNDGSPV---DLVIGSGTPLGT 132 (346)
T ss_dssp EGGGCCSSCCB-----------CCSSTTCTT---------S-TTTHHHHHHHHHHHCCCC---CE---EEEEEEEECGGG
T ss_pred CcEEEEcccee-----------cccCCCccc---------C-hhHHHHHHHHHHHhhhccCCCce---EEEEcccCCHHH
Confidence 46789999887 678888876 5 66777777777543210111111 355 55444 4
Q ss_pred ChHHHHHHHHHHHHh-------------cCCCEEEEeehhhHhhhhc--CC------ceEEEEeeCCCcEEEEEee--CC
Q 009546 186 DNREIKEMLSIVLRD-------------LRFASAVVHQEGLAAVFGN--GL------STACVVNMGAQVTSVICVE--DG 242 (532)
Q Consensus 186 ~~~~~rkl~eilFE~-------------~~~psv~~~~~avlalya~--G~------~tglVVDiG~~~T~VvpV~--dG 242 (532)
...+.+.+.+.+... +++..+.+++++.+|++++ +. .+.+|||+|+++|.|+-+. +|
T Consensus 133 ~~~er~a~~~~~~~~~~~v~~~~G~~~~i~v~~v~li~Ep~AAa~~~l~~~~~~~~~~~vlVvDIGgGTtDv~vi~~~~g 212 (346)
T 2fsj_A 133 FDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIMRPQGVGAALYLLNQGIIEQQPGYGVVIDVGSRTTDVLTINLMDM 212 (346)
T ss_dssp HHHHHHHHHHHHTTEEEEEECGGGCEEEEEEEEEEEEETTHHHHHHHHHHTSSCCCSSEEEEEEECSSCEEEEEEETTTT
T ss_pred HHHHHHHHHHHHcCCCcEEEeCCCceEEEEEEEEEEEccHHHHHHHhhccccccccCCcEEEEECCCCcEEEEEEEecCC
Confidence 444433355543332 2356799999999999985 31 2359999999999999998 78
Q ss_pred eeccCCcEEecchHHHHHHHHHHHHHhc
Q 009546 243 VALPNTEKTLPFGGEDISRCLLWTQRHH 270 (532)
Q Consensus 243 ~vl~~s~~~~~~GG~~lt~~L~~lL~~~ 270 (532)
.++......+++||+++++.+.+.++.+
T Consensus 213 ~~v~~~s~~~~lGg~~i~~~I~~~i~~~ 240 (346)
T 2fsj_A 213 EPVVELSFSLQIGVGDAISALSRKIAKE 240 (346)
T ss_dssp EECGGGCEEESCCHHHHHHHHHHHHHHH
T ss_pred EEEeecCCCcchhHHHHHHHHHHHHHHH
Confidence 7665556788999999999998777654
No 22
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A
Probab=97.58 E-value=0.00062 Score=72.49 Aligned_cols=92 Identities=15% Similarity=0.164 Sum_probs=64.5
Q ss_pred HHHHHHHHHhcCCCEEEEeehhhHhhhhcC----Cc-eEEEEeeCCCcEEEEEeeCCeeccCCcEEecchHHHHHHHHHH
Q 009546 191 KEMLSIVLRDLRFASAVVHQEGLAAVFGNG----LS-TACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLW 265 (532)
Q Consensus 191 rkl~eilFE~~~~psv~~~~~avlalya~G----~~-tglVVDiG~~~T~VvpV~dG~vl~~s~~~~~~GG~~lt~~L~~ 265 (532)
+.+.+.+=..++++-=.=.-++.+|.+|+= +. -.++||+|+++|++.-+.+|..+. ...+++||+++|..+..
T Consensus 371 ~NI~~cVer~~gL~veV~g~ep~AAglaaLTeDE~eLGvaiIDmGGGTTd~sVf~~G~lv~--a~~ip~gG~~VT~DIA~ 448 (610)
T 2d0o_A 371 AMIAREIEQKLNIDVQIGGAEAEAAILGALTTPGTTRPLAILDLGAGSTDASIINPKGDII--ATHLAGAGDMVTMIIAR 448 (610)
T ss_dssp HHHHHHHHHHHCCEEEEEEEHHHHHHHHHTTSTTCCSSEEEEEECSSEEEEEEECTTCCEE--EEEEECSHHHHHHHHHH
T ss_pred HHHHHHHHhccCCcceeccccHHHhhhhhcCCCCCcCCeEEEEeCCCcceEEEEcCCcEEE--EEEeccchHHHHHHHHH
Confidence 345554444445521111166777777663 33 469999999999999999998774 45799999999999987
Q ss_pred HHHhcCCCCCcccccccccchHHHHHHHHHHceec
Q 009546 266 TQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEI 300 (532)
Q Consensus 266 lL~~~~~~p~~~~~~l~~~~d~~~~~~iKe~~c~v 300 (532)
-|.. -|...+|+||. +...
T Consensus 449 ~Lgt---------------~d~~~AErIK~-YG~A 467 (610)
T 2d0o_A 449 ELGL---------------EDRYLAEEIKK-YPLA 467 (610)
T ss_dssp HHTC---------------CCHHHHHHHHH-SCEE
T ss_pred HhCC---------------CCHHHHHHhcc-cCce
Confidence 7642 24688999998 6544
No 23
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6
Probab=97.54 E-value=0.00058 Score=72.91 Aligned_cols=73 Identities=21% Similarity=0.166 Sum_probs=56.9
Q ss_pred ehhhHhhhhcC----Cc-eEEEEeeCCCcEEEEEeeCCeeccCCcEEecchHHHHHHHHHHHHHhcCCCCCccccccccc
Q 009546 210 QEGLAAVFGNG----LS-TACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKA 284 (532)
Q Consensus 210 ~~avlalya~G----~~-tglVVDiG~~~T~VvpV~dG~vl~~s~~~~~~GG~~lt~~L~~lL~~~~~~p~~~~~~l~~~ 284 (532)
-++.+|.+|+= +. -.++||+|+++|++.-+.+|..+. ...+++||+++|..+..-|..
T Consensus 392 ~ep~AA~laaLTedE~elGvaiIDmGgGTTd~sVf~~g~lv~--a~~ip~gG~~VT~DIA~~Lg~--------------- 454 (607)
T 1nbw_A 392 VEANMAIAGALTTPGCAAPLAILDLGAGSTDAAIVNAEGQIT--AVHLAGAGNMVSLLIKTELGL--------------- 454 (607)
T ss_dssp CHHHHHHHHHTTSTTCCSSEEEEEECSSEEEEEEECSSSCEE--EEEEECCHHHHHHHHHHHHTC---------------
T ss_pred ccHHHhhhhhcCCCCCcCCeEEEEeCCCcceEEEEcCCcEEE--EEEeccchHHHHHHHHHHhCC---------------
Confidence 56677766662 33 469999999999999999998774 457999999999999877642
Q ss_pred chHHHHHHHHHHceec
Q 009546 285 MDLLMLNRIKESYCEI 300 (532)
Q Consensus 285 ~d~~~~~~iKe~~c~v 300 (532)
-|...+|+||. +...
T Consensus 455 ~d~~~AErIK~-YG~A 469 (607)
T 1nbw_A 455 EDLSLAEAIKK-YPLA 469 (607)
T ss_dssp SCHHHHHHHHH-SCEE
T ss_pred CCHHHHHHhcc-cCce
Confidence 24688999998 6544
No 24
>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus}
Probab=97.15 E-value=0.00065 Score=69.83 Aligned_cols=68 Identities=7% Similarity=0.102 Sum_probs=58.7
Q ss_pred CCEEEEeehhhHhhhhcCC-----------ceEEEEeeCCCcEEEEEeeCCeeccCCcEEecchHHHHHHHHHHHHHhc
Q 009546 203 FASAVVHQEGLAAVFGNGL-----------STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHH 270 (532)
Q Consensus 203 ~psv~~~~~avlalya~G~-----------~tglVVDiG~~~T~VvpV~dG~vl~~s~~~~~~GG~~lt~~L~~lL~~~ 270 (532)
+..|.+++++++|+|+.+. ...+|||||+++|.++.+.+|.+.......+++||+.+++.+.+.++.+
T Consensus 154 I~~V~v~pE~~~a~~~~~~~~~~~~~~~~~~~~~vvDiGggTtd~~v~~~~~~~~~~s~s~~~G~~~~~~~i~~~l~~~ 232 (355)
T 3js6_A 154 VKGVKIVAQPMGTLLDLNMENGKVFKAFTEGKYSVLDFGSGTTIIDTYQNMKRVEEESFVINKGTIDFYKRIASHVSKK 232 (355)
T ss_dssp EEEEEEEEHHHHHHHHTTEETTEECHHHHTCEEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHHTC--
T ss_pred EEEEEEEeCcHHHHHHHHHccCccccccccCcEEEEEeCCCcEEEEEEcCCEEccccccCcchHHHHHHHHHHHHHHHh
Confidence 4789999999999999862 3568999999999999998999988777889999999999999888754
No 25
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A
Probab=97.03 E-value=0.00063 Score=68.65 Aligned_cols=72 Identities=10% Similarity=0.117 Sum_probs=58.6
Q ss_pred HhcCCCEEEEeehhhHhhhhcC-----CceEEEEeeCCCcEEEEEeeCCee-ccCCcEEecchHHHHHHHHHHHHHhc
Q 009546 199 RDLRFASAVVHQEGLAAVFGNG-----LSTACVVNMGAQVTSVICVEDGVA-LPNTEKTLPFGGEDISRCLLWTQRHH 270 (532)
Q Consensus 199 E~~~~psv~~~~~avlalya~G-----~~tglVVDiG~~~T~VvpV~dG~v-l~~s~~~~~~GG~~lt~~L~~lL~~~ 270 (532)
+.+++..+.+++++++|+++.+ ....+|||+|+++|.++-+.+|.+ +..+....++||+++++.+.+.+..+
T Consensus 136 ~~~~i~~v~~~~e~~aa~~~~~~~~~~~~~~~vvDiGggttd~~v~~~g~~~v~~~~~~~~lGg~~~~~~I~~~l~~~ 213 (320)
T 2zgy_A 136 DTFTIKDVKVMPESIPAGYEVLQELDELDSLLIIDLGGTTLDISQVMGKLSGISKIYGDSSLGVSLVTSAVKDALSLA 213 (320)
T ss_dssp CCCEEEEEEEEESSHHHHHHHHHHSCTTCEEEEEEECSSCEEEEEEEGGGCCEEEEEEECSCCTHHHHHHHHHHTTCC
T ss_pred cEEEEEEEEEecCcHHHHHhhhccccCCCCEEEEEcCCCeEEEEEEeCCeeEEeeecCCccccHHHHHHHHHHHHHHc
Confidence 3556788999999999998864 236799999999999999999876 43344677999999999998887643
No 26
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani}
Probab=96.76 E-value=0.0015 Score=66.29 Aligned_cols=67 Identities=13% Similarity=0.125 Sum_probs=57.4
Q ss_pred CCEEEEeehhhHhhhhcC----CceEEEEeeCCCcEEEEEeeCCeeccCCcEEecchHHHHHHHHHHHHHh
Q 009546 203 FASAVVHQEGLAAVFGNG----LSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRH 269 (532)
Q Consensus 203 ~psv~~~~~avlalya~G----~~tglVVDiG~~~T~VvpV~dG~vl~~s~~~~~~GG~~lt~~L~~lL~~ 269 (532)
+..+.+.++++.++|... ..+.+|||||+++|.++.+.+|.+.......+++||+++++.+.+.++.
T Consensus 149 I~~v~v~pe~~ga~~~~~~~~~~~~v~vvDiGggTtd~~v~~~g~~~~~~~~~~~~G~~~~~~~i~~~l~~ 219 (329)
T 4apw_A 149 ITDITIKAEGSGVLFLEQENFKNKNVAVIDFGGLNMGFSLYRNCVVNPSERFIEEHGVKDLIIRVGDALTD 219 (329)
T ss_dssp EEEEEEEEHHHHHHHHSCCCCTTCEEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHTSSSS
T ss_pred EeEEEEEeccHHHHhhcchhhccCCEEEEEeCCCcEEEEEEECCEEeeccccchhhHHHHHHHHHHHHHHh
Confidence 567999999999998862 2467999999999999999999988776778999999999998876654
No 27
>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A
Probab=84.21 E-value=0.71 Score=46.39 Aligned_cols=25 Identities=24% Similarity=0.501 Sum_probs=23.4
Q ss_pred ceEEEEeeCCCcEEEEEeeCCeecc
Q 009546 222 STACVVNMGAQVTSVICVEDGVALP 246 (532)
Q Consensus 222 ~tglVVDiG~~~T~VvpV~dG~vl~ 246 (532)
.++++||||..+|.++|+.+|.++.
T Consensus 127 ~~~llvDIGsTTTDIipi~~G~pl~ 151 (334)
T 3cet_A 127 ENCILVDMGSTTTDIIPIVEGKVVA 151 (334)
T ss_dssp SSEEEEEECSSCEEEEEEETTEECC
T ss_pred CCEEEEEcCcchhhhhhhcCCeecc
Confidence 5799999999999999999999975
No 28
>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A*
Probab=83.39 E-value=1.6 Score=43.52 Aligned_cols=69 Identities=20% Similarity=0.228 Sum_probs=50.5
Q ss_pred HHHHHHHHhcCCCEEEEeehh---hHhhhh----cC-CceEEEEeeCCCcEEEEEeeCCeeccCCcEEecchHHHHHHHH
Q 009546 192 EMLSIVLRDLRFASAVVHQEG---LAAVFG----NG-LSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCL 263 (532)
Q Consensus 192 kl~eilFE~~~~psv~~~~~a---vlalya----~G-~~tglVVDiG~~~T~VvpV~dG~vl~~s~~~~~~GG~~lt~~L 263 (532)
++++.+-+..|++ +-++... .++..| .+ ..+++|||||.++|.++-..+|.+. ....+++|+-.+++.+
T Consensus 101 ~fl~~v~~~~G~~-i~vIsg~eEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~~~~~~--~~~Sl~~G~v~l~e~~ 177 (315)
T 1t6c_A 101 EFLERVKREVGLV-VEVITPEQEGRYAYLAVAYSLKPEGEVCVVDQGGGSTEYVFGKGYKVR--EVISLPIGIVNLTETF 177 (315)
T ss_dssp HHHHHHHHHTCCC-EEECCHHHHHHHHHHHHHHHTCCCSEEEEEEEETTEEEEEEEETTEEE--EEEEECCCHHHHHHHH
T ss_pred HHHHHHHHHHCCC-EEEcCHHHHHHHHHHHHHhhcccCCCEEEEEeCCCcEEEEEEeCCcee--eEEEEeccHHHHHHHh
Confidence 4677777788886 5555533 233222 23 5579999999999999999888775 3567999999999875
No 29
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A
Probab=79.84 E-value=0.31 Score=47.39 Aligned_cols=66 Identities=20% Similarity=0.323 Sum_probs=44.5
Q ss_pred CHHHHHHHHHhcCCChHHHHHhhhCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCccceEeceeeee
Q 009546 409 GLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLG 488 (532)
Q Consensus 409 gL~e~I~~sI~~~~~~d~r~~L~~NIvL~GG~S~i~Gf~eRL~~EL~~~~p~~~~~~~V~v~~~~~~~~~~aW~GgSIla 488 (532)
++.+.|.+.+.. .-.+....+.|+|+||.|..|++.++|++++.. ++.+. .+|.+.+=+|++++|
T Consensus 188 ~~~~~v~~~l~~---~~~~~~~~~~vvl~GGva~n~~lr~~l~~~~g~---------~~~~p---~~p~~~~A~GAAl~A 252 (276)
T 4ehu_A 188 GIHTSVAKRVSS---LVKRIGVQRNVVMVGGVARNSGIVRAMAREINT---------EIIVP---DIPQLTGALGAALYA 252 (276)
T ss_dssp HHHHHHHHHHHH---HHHHHCCCSSEEEESGGGGCHHHHHHHHHHHTS---------CEECC---SSGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHhcccCCeEEEecCccchHHHHHHHHHHHCC---------CeeeC---CCcchHHHHHHHHHH
Confidence 455555555432 233444567899999999999999999887631 23332 356777668999887
Q ss_pred c
Q 009546 489 I 489 (532)
Q Consensus 489 s 489 (532)
.
T Consensus 253 ~ 253 (276)
T 4ehu_A 253 F 253 (276)
T ss_dssp H
T ss_pred H
Confidence 3
No 30
>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii}
Probab=77.67 E-value=2.5 Score=42.13 Aligned_cols=69 Identities=12% Similarity=0.178 Sum_probs=49.3
Q ss_pred HHHHHHHHhcCCCEEEEee---hhhHhhhhc----C--CceEEEEeeCCCcEEEEEeeCCeeccCCcEEecchHHHHHHH
Q 009546 192 EMLSIVLRDLRFASAVVHQ---EGLAAVFGN----G--LSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRC 262 (532)
Q Consensus 192 kl~eilFE~~~~psv~~~~---~avlalya~----G--~~tglVVDiG~~~T~VvpV~dG~vl~~s~~~~~~GG~~lt~~ 262 (532)
++++-+-+..|++ +-++. ++-++.+|. . ...++|||||.++|.++-+.+|.+.. ...+++|.-.+++.
T Consensus 93 ~fl~~i~~~tG~~-i~vIsG~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~~~~~~--~~Sl~lG~vrl~e~ 169 (315)
T 3mdq_A 93 VLIDRIKKEVNID-VEVIDGAREAELIFRGVQQAVPMEDHISLAMDIGGGSVEFIIGNKNEILW--KQSFEIGGQRLIDR 169 (315)
T ss_dssp HHHHHHHHHHCCC-EEECCHHHHHHHHHHHHHHHSCCTTCCEEEEEECSSCEEEEEECSSCEEE--EEEESCCHHHHHHH
T ss_pred HHHHHHHHHHCCC-eEEeCHHHHHHHHHHHHHhcCCCCCCCEEEEEeCCCceEEEEEECCeEee--eEEEechhhHHHHH
Confidence 4666667778886 55554 333333221 2 25689999999999999999987763 56799999888875
Q ss_pred H
Q 009546 263 L 263 (532)
Q Consensus 263 L 263 (532)
+
T Consensus 170 f 170 (315)
T 3mdq_A 170 F 170 (315)
T ss_dssp S
T ss_pred h
Confidence 4
No 31
>3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705}
Probab=76.90 E-value=2 Score=43.39 Aligned_cols=71 Identities=17% Similarity=0.165 Sum_probs=48.4
Q ss_pred HHHHHHHHhcCCCEEEEee---hhhHhhhhc----C----CceEEEEeeCCCcEEEEEeeC--Ceec--cCCcEEecchH
Q 009546 192 EMLSIVLRDLRFASAVVHQ---EGLAAVFGN----G----LSTACVVNMGAQVTSVICVED--GVAL--PNTEKTLPFGG 256 (532)
Q Consensus 192 kl~eilFE~~~~psv~~~~---~avlalya~----G----~~tglVVDiG~~~T~VvpV~d--G~vl--~~s~~~~~~GG 256 (532)
++++-+-+.+|++ +-++. ++-++..|. + ...++|||||.++|.++-+.+ +.+. ......+++|+
T Consensus 106 ~fl~~v~~~tGi~-ieVIsG~eEA~l~~~gv~~~~~~~~~~~~~lviDIGGGStel~~~~~~~~~~~~~~~~~~SlplG~ 184 (343)
T 3cer_A 106 EFEDEIERILGVR-PEVIPGTEEADLSFLGATSVVNRDDLPAPYLVVDLGGGSTELVIGGDGVSAPTTQVQGAFSMNIGS 184 (343)
T ss_dssp HHHHHHHHHHSSC-CEECCHHHHHHHHHHHHHSSCCTTTCCSSEEEEEECSSCEEEEECCCSSSSCTTSCSEEEEESCCH
T ss_pred HHHHHHHHHHCCC-EEEeCHHHHHHHHHHHHHhhCccccccCCEEEEEeCCCceEEEEeecCccCcccccceeEEEehhH
Confidence 4666667777886 44544 344444443 2 246999999999999998876 4321 12356899999
Q ss_pred HHHHHHH
Q 009546 257 EDISRCL 263 (532)
Q Consensus 257 ~~lt~~L 263 (532)
..+++.+
T Consensus 185 v~lt~~~ 191 (343)
T 3cer_A 185 VRMTERH 191 (343)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9999875
No 32
>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A*
Probab=69.35 E-value=6.6 Score=41.82 Aligned_cols=69 Identities=10% Similarity=0.142 Sum_probs=49.4
Q ss_pred HHHHHHHHhcCCCEEEEeeh---hhHhhhhc----CC-ceEEEEeeCCCcEEEEEeeCCeeccCCcEEecchHHHHHHHH
Q 009546 192 EMLSIVLRDLRFASAVVHQE---GLAAVFGN----GL-STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCL 263 (532)
Q Consensus 192 kl~eilFE~~~~psv~~~~~---avlalya~----G~-~tglVVDiG~~~T~VvpV~dG~vl~~s~~~~~~GG~~lt~~L 263 (532)
++++-+-+..|++ |-++.. +-++..|. .. ..++|||||.++|.++-..+|.+. ....+++|.-.+++.+
T Consensus 100 ~fl~~i~~~tG~~-i~vIsG~eEA~l~~~gv~~~~~~~~~~lviDIGGGStEl~~~~~~~~~--~~~Sl~lG~vrlte~f 176 (513)
T 1u6z_A 100 DFLKRAEKVIPYP-IEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEPI--LVESRRMGCVSFAQLY 176 (513)
T ss_dssp HHHHHHTTTCSSC-EEECCHHHHHHHHHHHHHHHSCCCSCEEEEEECSSCEEEEEEETTEEE--EEEEESCCHHHHHHHH
T ss_pred HHHHHHHHHHCCC-EEEeCHHHHHHHHHHHHHhhccCCCCEEEEEECCCcEEEEEEeCCeee--EEEEEeccHHHHHHHH
Confidence 4666677888886 555543 33333322 11 269999999999999998888775 3567999999998765
No 33
>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str}
Probab=64.40 E-value=11 Score=40.20 Aligned_cols=68 Identities=21% Similarity=0.226 Sum_probs=49.1
Q ss_pred HHHHHHHHhcCCCEEEEee---hhhHhhhh----cCCceEEEEeeCCCcEEEEEeeCCeeccCCcEEecchHHHHHHH
Q 009546 192 EMLSIVLRDLRFASAVVHQ---EGLAAVFG----NGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRC 262 (532)
Q Consensus 192 kl~eilFE~~~~psv~~~~---~avlalya----~G~~tglVVDiG~~~T~VvpV~dG~vl~~s~~~~~~GG~~lt~~ 262 (532)
++++-+-+..|++ |-++. ++-++..| .....++|||||.++|.++-+.+|.+. ....+++|.-.+++.
T Consensus 104 ~fl~~i~~~tG~~-ievIsG~EEA~l~~~gv~~~~~~~~~lvvDIGGGStEl~~~~~~~~~--~~~Sl~lG~vrl~e~ 178 (508)
T 3hi0_A 104 DFIREAEAILGCE-IEVLSGEKEALYSAYGVISGFYQPDGIAGDLGGGSLELIDIKDKSCG--EGITLPLGGLRLSEQ 178 (508)
T ss_dssp HHHHHHHHHHTSC-EEECCHHHHHHHHHHHHHHHSSSCEEEEEEECSSCEEEEEEETTEEC--CCEEESCCHHHHHHH
T ss_pred HHHHHHHHHHCCC-eEEecHHHHHHHHHHHHHhcCCCCCeEEEEeCCCceEEEEeeCCeee--eEEEecceEEehhhc
Confidence 4666667788887 55554 33333332 223468999999999999999999876 356889999888863
No 34
>3aap_A Ectonucleoside triphosphate diphosphohydrolase I; adenosine triphosphatase, ntpdase; 1.60A {Legionella pneumophila} PDB: 3aaq_A* 3aar_A*
Probab=54.09 E-value=10 Score=38.26 Aligned_cols=35 Identities=14% Similarity=0.208 Sum_probs=25.7
Q ss_pred ceEEEEeeCCCcEEEEEeeC--CeeccCCcEEecchH
Q 009546 222 STACVVNMGAQVTSVICVED--GVALPNTEKTLPFGG 256 (532)
Q Consensus 222 ~tglVVDiG~~~T~VvpV~d--G~vl~~s~~~~~~GG 256 (532)
.+++|||+|.++|.++-... +.+.......+++||
T Consensus 140 ~t~~v~DiGGGStei~~~~~~~~~~~~~~~~sl~lG~ 176 (353)
T 3aap_A 140 KSVGVMDMGGASVQIVFPMPKNAEISKHNQVELNIYG 176 (353)
T ss_dssp SCEEEEEECSSEEEEEEECCCCTTSCGGGEEEEEETT
T ss_pred ccEEEEEeCCCceEEEEecCCccccCCCceEEEEECC
Confidence 36999999999999998754 334333346778776
No 35
>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14
Probab=45.09 E-value=3.4 Score=40.64 Aligned_cols=49 Identities=18% Similarity=0.098 Sum_probs=35.8
Q ss_pred hhCeEEEcC-CCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCccceEeceeeee
Q 009546 431 FCSIQLIGG-VALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLG 488 (532)
Q Consensus 431 ~~NIvL~GG-~S~i~Gf~eRL~~EL~~~~p~~~~~~~V~v~~~~~~~~~~aW~GgSIla 488 (532)
.++|+++|| .+..|++.++|++.+... .. ++.++ .+++|..=+||++++
T Consensus 237 i~~Vvf~Gg~l~~n~~l~~~l~~~~~~~-----~~-~~~~p---~~~~~~gAlGAaL~~ 286 (287)
T 2ews_A 237 TENIVYIGSSFHNNALLRKVVEDYTVLR-----GC-KPYYV---ENGAFSGAIGALYLE 286 (287)
T ss_dssp CCEEEEESGGGTTCHHHHHHHHHHHHHT-----TC-EEEEC---TTGGGHHHHHHHHTC
T ss_pred CCeEEEeCCchhcCHHHHHHHHHHHhhC-----Cc-eEEEC---CCccHHHHHHHHHhC
Confidence 357999999 899999999999766432 11 34443 467888878887654
No 36
>2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A*
Probab=37.53 E-value=11 Score=38.12 Aligned_cols=73 Identities=11% Similarity=0.043 Sum_probs=45.7
Q ss_pred CHHHHHHHHHhcCCChHHHHHhhhCeEEEcC-CCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCccceEeceeee
Q 009546 409 GLAEAVTSSILSTGRIDLQRKLFCSIQLIGG-VALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVL 487 (532)
Q Consensus 409 gL~e~I~~sI~~~~~~d~r~~L~~NIvL~GG-~S~i~Gf~eRL~~EL~~~~p~~~~~~~V~v~~~~~~~~~~aW~GgSIl 487 (532)
||..+|.+.|....-.-.++.=.++|+++|| .+.-|++.+.|++.|.-...... ++.++ .+++|..=+||.++
T Consensus 284 gll~sVa~~I~~lA~l~A~~~~i~~IvftGgfla~n~~~~~~L~~~l~~ws~g~~---~~~~~---~~~~y~GAlGAaL~ 357 (360)
T 2i7n_A 284 ATLVTITNNIGSIARMCALNENIDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQL---KALFL---EHEGYFGAVGALLE 357 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCEEEESGGGCSSSHHHHHHHHHHHHHTTTSC---CEEEE---TTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCeEEEeCcccccCHHHHHHHHHHHhhhhcCCe---eEEEc---CCccHHHHHHHHHH
Confidence 5666666655433001123434468999999 89999999999998864322221 34554 35678877777654
No 37
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*
Probab=34.38 E-value=5.3 Score=40.09 Aligned_cols=47 Identities=17% Similarity=0.080 Sum_probs=27.6
Q ss_pred hhhCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCccceEeceeeee
Q 009546 430 LFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLG 488 (532)
Q Consensus 430 L~~NIvL~GG~S~i~Gf~eRL~~EL~~~~p~~~~~~~V~v~~~~~~~~~~aW~GgSIla 488 (532)
....|+|+||+|++ +.+.|+++ ++. . .+.....+|.++.=+|.-.++
T Consensus 296 ~i~~IvL~GGga~l--l~~~l~~~----~~~---~---~i~~~~~~P~~ava~G~~~~~ 342 (346)
T 2fsj_A 296 RVTSLIPVGGGSNL--IGDRFEEI----APG---T---LVKIKPEDLQFANALGYRDAA 342 (346)
T ss_dssp GEEEEEEESTTHHH--HGGGGGGG----STT---C---BCCCCTTTTTTHHHHHHHHHH
T ss_pred cccEEEEECCcHHH--HHHHHHHH----CcC---c---EEeccCCCcHHHHHHHHHHHH
Confidence 44889999999998 55554443 331 1 120112467777777755443
No 38
>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10
Probab=32.85 E-value=76 Score=30.24 Aligned_cols=52 Identities=10% Similarity=0.138 Sum_probs=41.9
Q ss_pred HHHHHHHhcCCCEEEEeehhhHhhhhc-----CCceEEEEeeCCCcEEEEEeeCCeeccC
Q 009546 193 MLSIVLRDLRFASAVVHQEGLAAVFGN-----GLSTACVVNMGAQVTSVICVEDGVALPN 247 (532)
Q Consensus 193 l~eilFE~~~~psv~~~~~avlalya~-----G~~tglVVDiG~~~T~VvpV~dG~vl~~ 247 (532)
+.+.+ +.|++| |++.+.+-++++|. +..+.++|-+|.+ .-..-|.+|.++..
T Consensus 87 l~~~l-~~~~~p-v~v~NDa~aaa~~e~~~~~~~~~~v~l~~GtG-iG~giv~~G~l~~G 143 (292)
T 2gup_A 87 WYEAL-SSYQLP-VHLENDANCVGLSELLAHPELENAACVVIGTG-IGGAMIINGRLHRG 143 (292)
T ss_dssp HHHHT-GGGCCC-EEEEEHHHHHHHHHHHHCTTCSSEEEEEESSS-EEEEEEETTEEECC
T ss_pred HHHHH-HHcCCC-EEEechHHHHHHHHHHhcCCCCeEEEEEECCc-eEEEEEECCEEEec
Confidence 66777 899998 89999999999883 5578999999987 44666779988753
No 39
>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus}
Probab=32.02 E-value=4 Score=41.29 Aligned_cols=45 Identities=18% Similarity=0.103 Sum_probs=29.8
Q ss_pred HhhhCeEEEcCCCCcCC--hHHHHHHHHhhhCCCCCCcceEEEcCCCCCCccceEeceeeeec
Q 009546 429 KLFCSIQLIGGVALTGG--LIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGI 489 (532)
Q Consensus 429 ~L~~NIvL~GG~S~i~G--f~eRL~~EL~~~~p~~~~~~~V~v~~~~~~~~~~aW~GgSIlas 489 (532)
..+..|+|+||+|.++| +.+.|++++ | .. .+|.++.=+|.-+++.
T Consensus 289 ~~~~~Ivl~GGGa~l~~~~l~~~i~~~~----~---------~~---~~p~~anA~G~~~~~~ 335 (355)
T 3js6_A 289 NSIDRIIVTGGGANIHFDSLSHYYSDVF----E---------KA---DDSQFSNVRGYEKLGE 335 (355)
T ss_dssp TSCSEEEEESTTHHHHHHHHHHHSSSCE----E---------CC---SSGGGHHHHHHHHHHH
T ss_pred hhccEEEEECcchhcchhhHHHHHHHHC----C---------CC---CCcHHHHHHHHHHHHH
Confidence 34578999999999877 555544322 1 11 4678888888766654
No 40
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani}
Probab=30.57 E-value=16 Score=36.26 Aligned_cols=45 Identities=18% Similarity=0.287 Sum_probs=29.4
Q ss_pred hhhCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCccceEeceeeee
Q 009546 430 LFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLG 488 (532)
Q Consensus 430 L~~NIvL~GG~S~i~Gf~eRL~~EL~~~~p~~~~~~~V~v~~~~~~~~~~aW~GgSIla 488 (532)
+...|+|+||+|++ +.+.|++++ +. .+.+. .+|.++.=+|.-.++
T Consensus 278 ~~~~IvltGGGA~l--~~~~l~~~~----~~-----~v~v~---~~P~~a~a~G~~~~~ 322 (329)
T 4apw_A 278 QLDSLIFIGGTTQK--LKEQISKTY----PN-----NSIIT---NNSQWTTCEGLYKVA 322 (329)
T ss_dssp SCSEEEEESTTHHH--HHHHHHHHS----TT-----CEECC---SSGGGHHHHHHHHHH
T ss_pred HccEEEEECChHHH--HHHHHHHHc----CC-----CCEec---CCChhhHHHHHHHHH
Confidence 46889999999998 455565553 21 24544 367788777755444
No 41
>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis}
Probab=25.89 E-value=1.5e+02 Score=28.48 Aligned_cols=49 Identities=14% Similarity=0.194 Sum_probs=37.6
Q ss_pred HHHhcCCCEEEEeehhhHhhhhc-------CCceEEEEeeCCCcEEEEEeeCCeeccC
Q 009546 197 VLRDLRFASAVVHQEGLAAVFGN-------GLSTACVVNMGAQVTSVICVEDGVALPN 247 (532)
Q Consensus 197 lFE~~~~psv~~~~~avlalya~-------G~~tglVVDiG~~~T~VvpV~dG~vl~~ 247 (532)
+=+.|++| |++.+.+-++++|. +..+.++|-+|.+ +-..-|.+|.++..
T Consensus 104 l~~~~~~p-v~v~ND~~aaa~~e~~~g~~~~~~~~~~l~~GtG-iG~giv~~G~l~~G 159 (326)
T 2qm1_A 104 IESALGIP-FALDNDANVAALGERWKGAGENNPDVIFITLGTG-VGGGIVAAGKLLHG 159 (326)
T ss_dssp HHHHHCSC-EEEEEHHHHHHHHHHHHSTTTTCSCEEEEEESSS-EEEEEEETTEECCC
T ss_pred HHHHhCCC-EEEecHHHHHHHHHHHhCCCCCCCcEEEEEECCc-eEEEEEECCEEeec
Confidence 34556888 89999999988762 4568999999988 55667779988753
No 42
>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5
Probab=24.32 E-value=8.8 Score=37.05 Aligned_cols=54 Identities=24% Similarity=0.316 Sum_probs=36.9
Q ss_pred hCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCccceEeceeeeecccCcccee
Q 009546 432 CSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAW 497 (532)
Q Consensus 432 ~NIvL~GG~S~i~Gf~eRL~~EL~~~~p~~~~~~~V~v~~~~~~~~~~aW~GgSIlasL~~f~~~w 497 (532)
+.|+++||.++-+++.+++.+.+.. +|.+. ..+.+..=+|++++|....-+..|
T Consensus 210 ~~i~~~GG~a~n~~~~~~~~~~lg~---------~v~~p---~~~~~~~AlGAAl~A~~~~~~~~~ 263 (270)
T 1hux_A 210 KDVVMTGGVAQNYGVRGALEEGLGV---------EIKTS---PLAQYNGALGAALYAYKKAAKSAW 263 (270)
T ss_dssp SSEEEESGGGGCHHHHHHHHHHHCS---------CEECC---GGGGGHHHHHHHHHHHHHTTC---
T ss_pred CeEEEeCccccCHHHHHHHHHHHCC---------CeEeC---CCcchHhHHHHHHHHHHhhhcccc
Confidence 6799999999999999999988752 23332 345666668999888543224445
No 43
>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10 c.55.1.10
Probab=22.13 E-value=2.1e+02 Score=26.83 Aligned_cols=52 Identities=8% Similarity=0.069 Sum_probs=39.2
Q ss_pred HHHHHHHhcCCCEEEEeehhhHhhhhc-------CCceEEEEeeCCCcEEEEEeeCCeeccC
Q 009546 193 MLSIVLRDLRFASAVVHQEGLAAVFGN-------GLSTACVVNMGAQVTSVICVEDGVALPN 247 (532)
Q Consensus 193 l~eilFE~~~~psv~~~~~avlalya~-------G~~tglVVDiG~~~T~VvpV~dG~vl~~ 247 (532)
+.+.+=+.|++| +++.+.+-++++|. +. +.++|.+|.+ .-..-|.+|.++..
T Consensus 88 l~~~l~~~~~~p-v~v~NDa~aaa~~e~~~g~~~~~-~~v~l~~GtG-iG~gii~~G~l~~G 146 (289)
T 2aa4_A 88 LVKTLEQLTNLP-TIAINDAQAAAWAEFQALDGDIT-DMVFITVSTG-VGGGVVSGCKLLTG 146 (289)
T ss_dssp HHHHHHHHHCSC-EEEEEHHHHHHHHHHHTSCTTCC-CEEEEEESSS-EEEEEEETTEEECC
T ss_pred hHHHHHHHHCCC-EEEechHHHHHHHHHHhCCCCCc-eEEEEEeCcc-EEEEEEECCEEeeC
Confidence 444455667888 89999999987763 34 8999999987 56667789988754
No 44
>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A*
Probab=21.05 E-value=2.1e+02 Score=27.63 Aligned_cols=53 Identities=15% Similarity=0.186 Sum_probs=40.0
Q ss_pred HHHHHHHhcCCCEEEEeehhhHhhhh-----c--CCceEEEEeeCCCcEEEEEeeCCeeccC
Q 009546 193 MLSIVLRDLRFASAVVHQEGLAAVFG-----N--GLSTACVVNMGAQVTSVICVEDGVALPN 247 (532)
Q Consensus 193 l~eilFE~~~~psv~~~~~avlalya-----~--G~~tglVVDiG~~~T~VvpV~dG~vl~~ 247 (532)
+.+.+-+.|++| |++.+.+-++++| . +..+.++|-+|.+ .-..-|.+|.++..
T Consensus 88 l~~~l~~~~~~p-v~v~NDa~aaal~E~~~g~~~~~~~~~~l~~GtG-iG~gii~~G~l~~G 147 (321)
T 3vgl_A 88 LKDKVEQRVGLP-VVVENDANAAAWGEYRFGAGQGHDDVICITLGTG-LGGGIIIGNKLRRG 147 (321)
T ss_dssp HHHHHHHHHCSC-EEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSS-EEEEEEETTEECCC
T ss_pred HHHHHhhhhCCC-EEEEehhhhHHHHHHHhCCCCCCCCEEEEEeCcc-eEEEEEECCEEecC
Confidence 344455677998 9999999998876 2 3468899999987 56667779998763
No 45
>3djc_A Type III pantothenate kinase; structural genomics, putative transfera 2, protein structure initiative; 2.40A {Legionella pneumophila subsp}
Probab=20.76 E-value=1.4e+02 Score=28.46 Aligned_cols=48 Identities=8% Similarity=-0.001 Sum_probs=33.5
Q ss_pred EEEEeeCCCcEEEEEeeCCeeccCCcEEec-chHHHHHHHHHHHHHhcC
Q 009546 224 ACVVNMGAQVTSVICVEDGVALPNTEKTLP-FGGEDISRCLLWTQRHHQ 271 (532)
Q Consensus 224 glVVDiG~~~T~VvpV~dG~vl~~s~~~~~-~GG~~lt~~L~~lL~~~~ 271 (532)
-|+||||.+.+...-+.+|.++.......+ ...+.+...+..++...+
T Consensus 4 lL~IDIGNT~iK~gl~d~~~l~~~~r~~T~~~t~de~~~~l~~ll~~~~ 52 (266)
T 3djc_A 4 ILCIDVGNSHIYGGVFDGDEIKLRFRHTSKVSTSDELGIFLKSVLRENN 52 (266)
T ss_dssp EEEEEECSSEEEEEEEETTEEEEEEEEECSCCCHHHHHHHHHHHHHTTT
T ss_pred EEEEEECCCeEEEEEEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHcC
Confidence 489999999998888888776654433333 446667667777776554
No 46
>3cj1_A Ectonucleoside triphosphate diphosphohydrolase 2; alpha/beta protein, actin-like fold, alternative splicing, calcium, glycoprotein, magnesium; 1.70A {Rattus norvegicus} PDB: 3cj7_A* 3cj9_A* 3cja_A*
Probab=20.47 E-value=77 Score=33.00 Aligned_cols=22 Identities=14% Similarity=0.203 Sum_probs=18.9
Q ss_pred ceEEEEeeCCCcEEEEEeeCCe
Q 009546 222 STACVVNMGAQVTSVICVEDGV 243 (532)
Q Consensus 222 ~tglVVDiG~~~T~VvpV~dG~ 243 (532)
.+..|||+|.++|.|+-+.++.
T Consensus 190 ~t~gvlDlGGgStqi~~~~~~~ 211 (456)
T 3cj1_A 190 GTLGAMDLGGASTQITFETTSP 211 (456)
T ss_dssp CCCEEEEECSSEEEEEEECCSC
T ss_pred CceEEEEcCCCceEEEeccCCc
Confidence 4689999999999999887664
Done!