Query 009549
Match_columns 532
No_of_seqs 298 out of 2555
Neff 8.6
Searched_HMMs 46136
Date Thu Mar 28 14:27:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009549.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009549hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0498 K+-channel ERG and rel 100.0 2.9E-80 6.2E-85 659.8 32.6 450 9-517 87-579 (727)
2 KOG0500 Cyclic nucleotide-gate 100.0 1.9E-66 4.2E-71 514.8 23.2 410 5-488 2-427 (536)
3 PLN03192 Voltage-dependent pot 100.0 1.3E-64 2.7E-69 571.8 34.4 409 5-488 67-490 (823)
4 KOG0501 K+-channel KCNQ [Inorg 100.0 2.8E-64 6.1E-69 503.7 17.3 423 6-488 224-662 (971)
5 KOG0499 Cyclic nucleotide-gate 100.0 1.6E-56 3.5E-61 449.6 21.5 405 6-496 235-656 (815)
6 PRK09392 ftrB transcriptional 99.5 7.3E-13 1.6E-17 128.6 16.4 118 351-488 6-123 (236)
7 cd00038 CAP_ED effector domain 99.4 2.4E-12 5.1E-17 108.9 12.7 111 359-488 1-111 (115)
8 PF00027 cNMP_binding: Cyclic 99.4 2.1E-12 4.6E-17 105.0 9.4 90 377-486 1-91 (91)
9 PRK11753 DNA-binding transcrip 99.4 2.5E-11 5.4E-16 115.6 17.3 110 361-488 6-115 (211)
10 KOG3713 Voltage-gated K+ chann 99.3 4.6E-12 1E-16 128.7 11.2 50 233-282 379-428 (477)
11 smart00100 cNMP Cyclic nucleot 99.3 3E-11 6.6E-16 102.7 13.5 112 359-488 1-113 (120)
12 COG0664 Crp cAMP-binding prote 99.3 9.4E-11 2E-15 111.2 16.3 115 355-488 3-117 (214)
13 COG2905 Predicted signal-trans 99.3 8.4E-11 1.8E-15 121.0 16.1 157 351-532 6-167 (610)
14 PRK10402 DNA-binding transcrip 99.3 7E-11 1.5E-15 113.9 13.8 104 366-488 22-125 (226)
15 PRK11161 fumarate/nitrate redu 99.3 1.3E-10 2.7E-15 112.8 15.1 115 354-488 15-130 (235)
16 KOG0614 cGMP-dependent protein 99.2 2.5E-11 5.5E-16 123.1 8.0 123 348-488 268-391 (732)
17 KOG0614 cGMP-dependent protein 99.2 1.1E-11 2.3E-16 125.8 4.9 116 346-485 148-263 (732)
18 KOG1113 cAMP-dependent protein 99.2 2.6E-11 5.6E-16 118.0 6.8 111 351-485 121-231 (368)
19 PF07885 Ion_trans_2: Ion chan 99.2 1.6E-10 3.5E-15 91.9 9.3 53 231-283 24-76 (79)
20 PLN02868 acyl-CoA thioesterase 99.1 2.9E-10 6.3E-15 119.4 12.6 116 351-488 7-122 (413)
21 TIGR03697 NtcA_cyano global ni 99.1 2E-09 4.4E-14 100.8 13.6 89 383-488 1-89 (193)
22 PF00520 Ion_trans: Ion transp 99.1 1E-10 2.2E-15 109.6 4.2 182 36-280 2-200 (200)
23 PRK09391 fixK transcriptional 99.0 7.1E-09 1.5E-13 100.2 13.9 97 370-488 33-129 (230)
24 PRK13918 CRP/FNR family transc 98.9 1.8E-08 3.8E-13 95.3 14.2 84 374-477 5-90 (202)
25 KOG1419 Voltage-gated K+ chann 98.9 1.4E-09 3E-14 111.2 4.8 89 227-319 265-354 (654)
26 KOG1545 Voltage-gated shaker-l 98.9 2.9E-10 6.4E-15 110.3 -0.2 48 233-280 395-442 (507)
27 KOG1113 cAMP-dependent protein 98.9 4.7E-09 1E-13 102.5 7.3 118 347-487 235-352 (368)
28 PRK10537 voltage-gated potassi 98.5 2.7E-06 5.9E-11 88.1 15.3 53 231-283 168-220 (393)
29 KOG1420 Ca2+-activated K+ chan 98.5 4.2E-08 9.1E-13 100.5 1.5 132 230-367 287-425 (1103)
30 KOG4390 Voltage-gated A-type K 98.2 8.1E-08 1.7E-12 94.3 -3.5 52 232-283 357-412 (632)
31 KOG2968 Predicted esterase of 98.0 1.3E-05 2.9E-10 86.8 7.5 103 366-488 499-602 (1158)
32 PF01007 IRK: Inward rectifier 97.9 4.9E-05 1.1E-09 76.8 10.2 53 230-282 83-137 (336)
33 KOG3684 Ca2+-activated K+ chan 97.8 0.00039 8.5E-09 70.7 12.9 91 228-322 284-374 (489)
34 KOG2968 Predicted esterase of 97.6 0.00055 1.2E-08 74.7 11.4 105 370-488 110-216 (1158)
35 KOG1418 Tandem pore domain K+ 97.5 0.00016 3.5E-09 76.2 5.8 53 231-283 115-167 (433)
36 PRK11832 putative DNA-binding 97.2 0.013 2.8E-07 54.8 14.0 100 366-488 13-113 (207)
37 KOG4404 Tandem pore domain K+ 96.8 0.0087 1.9E-07 58.6 9.6 51 231-281 186-244 (350)
38 KOG3827 Inward rectifier K+ ch 96.2 0.011 2.4E-07 59.3 6.7 53 231-283 112-166 (400)
39 PF04831 Popeye: Popeye protei 96.1 0.14 3E-06 45.1 12.0 108 362-488 14-123 (153)
40 KOG4404 Tandem pore domain K+ 95.8 0.0014 3E-08 64.0 -1.7 52 231-282 80-131 (350)
41 KOG3542 cAMP-regulated guanine 94.5 0.13 2.7E-06 55.1 7.9 110 351-484 280-391 (1283)
42 KOG1418 Tandem pore domain K+ 94.3 0.0058 1.3E-07 64.2 -2.3 48 230-277 241-296 (433)
43 KOG3542 cAMP-regulated guanine 91.9 0.23 5E-06 53.1 5.0 90 352-473 37-126 (1283)
44 COG4709 Predicted membrane pro 83.9 3.2 6.9E-05 37.9 6.2 74 292-367 5-82 (195)
45 KOG3193 K+ channel subunit [In 82.9 0.2 4.3E-06 52.4 -2.0 33 233-265 219-251 (1087)
46 PF08006 DUF1700: Protein of u 76.9 8.1 0.00017 35.6 6.8 57 291-349 4-64 (181)
47 PF14377 DUF4414: Domain of un 75.1 6.2 0.00013 33.0 5.0 44 305-348 52-105 (108)
48 PF07883 Cupin_2: Cupin domain 64.9 11 0.00025 28.0 4.2 44 378-434 3-47 (71)
49 TIGR03037 anthran_nbaC 3-hydro 61.1 27 0.00057 31.4 6.2 69 381-476 36-105 (159)
50 PRK13290 ectC L-ectoine syntha 58.9 57 0.0012 28.0 7.8 70 375-472 37-106 (125)
51 PF14377 DUF4414: Domain of un 48.8 45 0.00097 27.8 5.4 48 305-352 8-68 (108)
52 PF00060 Lig_chan: Ligand-gate 46.8 7.5 0.00016 34.0 0.4 55 228-283 41-95 (148)
53 PRK13264 3-hydroxyanthranilate 46.2 51 0.0011 30.2 5.6 60 391-476 52-111 (177)
54 PF05899 Cupin_3: Protein of u 45.2 35 0.00076 26.2 3.9 30 394-435 26-55 (74)
55 COG5559 Uncharacterized conser 41.1 29 0.00063 25.2 2.6 19 331-349 5-23 (65)
56 PF12973 Cupin_7: ChrR Cupin-l 41.0 86 0.0019 24.9 5.8 64 374-471 25-88 (91)
57 PLN03223 Polycystin cation cha 40.7 7.7E+02 0.017 30.2 15.6 11 73-83 1211-1222(1634)
58 KOG3676 Ca2+-permeable cation 39.2 3.4E+02 0.0074 30.8 11.6 70 244-314 601-681 (782)
59 PF13314 DUF4083: Domain of un 36.1 85 0.0018 22.9 4.3 39 264-302 14-56 (58)
60 PF07697 7TMR-HDED: 7TM-HD ext 34.3 38 0.00082 31.8 3.2 59 335-394 146-207 (222)
61 PF14841 FliG_M: FliG middle d 30.7 56 0.0012 25.5 3.0 40 331-378 30-69 (79)
62 COG5559 Uncharacterized conser 28.9 59 0.0013 23.7 2.5 22 303-324 8-29 (65)
63 KOG2378 cAMP-regulated guanine 28.9 52 0.0011 34.4 3.1 44 430-485 1-45 (573)
64 smart00835 Cupin_1 Cupin. This 27.7 1.3E+02 0.0029 26.2 5.3 54 374-435 31-86 (146)
65 COG1917 Uncharacterized conser 27.7 1.3E+02 0.0028 25.7 5.1 48 375-435 45-93 (131)
66 PHA01757 hypothetical protein 27.1 2E+02 0.0044 22.4 5.3 44 255-298 4-50 (98)
67 COG0662 {ManC} Mannose-6-phosp 25.8 1.5E+02 0.0033 25.3 5.2 35 373-407 36-71 (127)
68 TIGR02451 anti_sig_ChrR anti-s 24.1 2E+02 0.0043 27.3 6.1 68 374-475 128-197 (215)
69 PRK06771 hypothetical protein; 24.0 3.9E+02 0.0084 21.7 6.6 46 258-306 2-51 (93)
70 PF02037 SAP: SAP domain; Int 23.8 41 0.00088 21.7 0.9 25 294-318 6-35 (35)
71 PF07077 DUF1345: Protein of u 22.4 2.6E+02 0.0057 25.7 6.3 48 231-278 132-179 (180)
72 PF06295 DUF1043: Protein of u 22.1 2.7E+02 0.0059 23.9 6.0 12 310-321 44-55 (128)
73 PF06865 DUF1255: Protein of u 21.6 3.7E+02 0.008 21.9 6.1 63 378-470 28-90 (94)
74 PF10047 DUF2281: Protein of u 21.4 80 0.0017 23.7 2.2 22 304-325 10-31 (66)
75 PF06971 Put_DNA-bind_N: Putat 20.6 2.3E+02 0.0051 20.0 4.3 42 304-345 1-49 (50)
No 1
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-80 Score=659.79 Aligned_cols=450 Identities=30% Similarity=0.521 Sum_probs=376.3
Q ss_pred eeeeeeEEecCcceEEec--------CCcceeEEeeehhhhhhcccceeeEEEE----EEecCce-EEecCHHHHHH--h
Q 009549 9 FFFYIPVLNNQNKCFQLD--------RNLGITATVLRSFIDLHKLPRIIHLIYV----ELCGNKE-EVKKSAYATAR--L 73 (532)
Q Consensus 9 l~~y~~~~~p~~~~f~~~--------~~~~~~~~~~~~~~d~~f~~~~~Di~l~----~~~~~g~-~V~~d~~~Ia~--l 73 (532)
+.+|++++.|+.+||... ......+.++|.++|++| ++||+++ |...++. +| .||++||+ +
T Consensus 87 ~~iya~~v~P~~f~f~~~~~~~~~~d~~~~~~l~v~d~ivD~ff---lvdIvL~Frtayv~~~s~elV-~dpk~IA~rYl 162 (727)
T KOG0498|consen 87 LVIYAAFVDPLFFYFLLIDDERKCIDGKLAAPLTVLDTIVDIFF---LVDIVLNFRTAYVDPSSYELV-DDPKKIAKRYL 162 (727)
T ss_pred HHHHHHHhccceeeEEecccccccccccccCceeeHHHHHHHHH---HHHHHHhheEEEECCCCceee-eCHHHHHHHHH
Confidence 445666666666666554 336788999999999999 9999999 5566665 89 99999999 9
Q ss_pred hhhhHHHHHhhcChhHHHHHHHhcccc-CCccchhHHHHHHHHHHHHHHHHhhccccc--------ccchHHHHHHHHHH
Q 009549 74 WIFFLIDILAVLPIPQVLVMLAKSHRM-SGRKFLFSMTFFLLQYVLRVIRTYGLLTKN--------DSTWAIVSFNLFLY 144 (532)
Q Consensus 74 k~~F~~Dlis~lP~~~~~~~~~~~~~~-~~~~~~~lrl~rl~~~l~rl~r~~~~~~~~--------~~~~~~~~~~l~~~ 144 (532)
|+||++|++|++|+++++.+. .+..- .......+..+-+++|++|++|+...+.+. .+.|..+++.++++
T Consensus 163 ~twFiiDlis~lP~~~i~~~~-~~~~~~~~~~~~~l~~il~~~rL~Rl~Rv~~l~~r~~k~~~~v~~~awa~~a~ll~~~ 241 (727)
T KOG0498|consen 163 KTWFLIDLISTLPFDQIVVLV-VIGSTSLALESTILVGILLLQRLPRLRRVIPLFARLEKDTGFVYETAWAGAALLLSVY 241 (727)
T ss_pred hhhHHHHHHHhcChhhheeee-eecccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 999999999999999998875 22000 000110133333344667777766554331 25566666788899
Q ss_pred HHHHHHHHHHHHhHhhhhhhhhhhhhhhccCcccCCcccccCCCccccccccccCCCCCCCCCcccchhhHHhhhcCccc
Q 009549 145 MHGGHVFGALWYFLAIEKVTACWKKTCINHHIRCSSRSFYCDDSLRDYKFLDEFCPITTGNKTNYDFGLFEDALQSGIVG 224 (532)
Q Consensus 145 ~l~~H~~aC~w~~i~~~~~~~~w~~~c~~~~~~c~~~~~~~~~~~~~~sWi~~~~~~~~~~~~~~~~g~y~~~~~~~~~~ 224 (532)
++++||.||+||++|.++..+||.+ .+|+...+...++....++||+
T Consensus 242 ~l~sH~~gc~wYlia~~~~~~~~~~----------------------~tw~~~l~~~~~~~~~~~~fg~----------- 288 (727)
T KOG0498|consen 242 LLASHWAGCIWYLIAIERPASCPRK----------------------ATWLGSLGRLLSCYNLSFTFGI----------- 288 (727)
T ss_pred HHHHHHHHHHHHHHHhcccccCccc----------------------cccccccccccccCcccccccc-----------
Confidence 9999999999999999888777752 1677653211123344466774
Q ss_pred CCChhHHHHHHHHHHHHHhhccCCCCCcCCChhhHHHHHHHHHHHHHHHHHHHhhhhhH----HHHHHHHHHHHHHhhcC
Q 009549 225 VTDFPQKFLHCLRWGLQNLSAFGQNLEASTDILDNIFAICMTNFGVVLFVFLIGKMQSD----TERSRSREQKLKEIKQG 300 (532)
Q Consensus 225 ~~~~~~~Yi~slYwa~~TmtTvGyGdi~p~t~~E~i~~i~~mi~G~~~~a~iig~i~~i----~~~~~~~~~~~~~i~~~ 300 (532)
.+++.+|++|+||+++||||+||||++|+|..|++|+|++|++|.++||++||||+++ +++.++|+.|+.++++|
T Consensus 289 -~s~~~kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~ 367 (727)
T KOG0498|consen 289 -YSLALKYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQW 367 (727)
T ss_pred -hhHHHHHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHH
Confidence 4566799999999999999999999999999999999999999999999999999998 77889999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhhcCCCCHHHHHHhCChhHHHHHHHHHhHHHhhcCcccccCCHHHHHHHHhccceeEe
Q 009549 301 PSFGRLSSRLQQKIKNYKQQNWIDDKHADVVNLVNNLPQGLRSQVKGELGTELLRNVKEFERWGEKELVDLSDCLNPVFF 380 (532)
Q Consensus 301 m~~~~lp~~L~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~~i~~~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~ 380 (532)
|+++++|++||+||++|++|.|..++|+||+++|++||..||.+|.+|++.++++++|+|+++|++++++|+.++|+..|
T Consensus 368 m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f 447 (727)
T KOG0498|consen 368 MSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYF 447 (727)
T ss_pred HHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeechhhhhhhhhhcCCCCCCCCCCccce
Q 009549 381 TDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCGEELIAWAQQKVDNPSSSNLPISTTT 460 (532)
Q Consensus 381 ~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~l~~~~~~l~~~~~~~~~~r~~t 460 (532)
+|||+|++|||+.++||||.+|.+++ .+.++|...+...+++||+|||.-++++ +..+ +++|
T Consensus 448 ~pge~iireGd~v~~myFI~rG~le~--------~~~~~g~~~~~~~L~~Gd~~GeEl~~~~---~~~p-------~t~T 509 (727)
T KOG0498|consen 448 TPGEYIIREGDPVTDMYFIVRGSLES--------ITTDGGGFFVVAILGPGDFFGEELLTWC---LDLP-------QTRT 509 (727)
T ss_pred CCCCeEEecCCccceeEEEEeeeEEE--------EEccCCceEEEEEecCCCccchHHHHHH---hcCC-------CCce
Confidence 99999999999999999999999999 6666553338999999999997666677 5322 4889
Q ss_pred EEEcceEEEEEeCHHHHHHHHHHchHHH---HHh------------HHHHHHHHHhHhHHHHHHHHhHhhhh
Q 009549 461 IQALTEVEGFYLLASDLKNAFIEHRRYQ---IVR------------AVRLIQTFWRFRRILRFKMNQRRSIN 517 (532)
Q Consensus 461 v~a~t~~~l~~L~~~~f~~ll~~~P~~~---~~~------------a~~~iq~~~~~~~~~~~~~~~~~~~~ 517 (532)
|+|.|.|+++.|+++||..++++||+++ +++ |++.+|.+|+ ++.+++..+.+..+
T Consensus 510 Vralt~~el~~L~~~dL~~V~~~f~~~~~~~l~~~~r~~s~~~r~~aa~~iq~a~r--~~~~~~~~~~l~~~ 579 (727)
T KOG0498|consen 510 VRALTYCELFRLSADDLKEVLQQFRRLGSKFLQHTFRYYSHLWRTWAACFIQAAWR--RHIKRKGEEELALE 579 (727)
T ss_pred eehhhhhhHHhccHHHHHHHHHHhHHHHHHHHHhHHHHhhhhhhhhhhhhHHHHHH--HHHHhhccchhhhh
Confidence 9999999999999999999999999998 442 8899999999 88888877777765
No 2
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-66 Score=514.78 Aligned_cols=410 Identities=20% Similarity=0.273 Sum_probs=347.4
Q ss_pred eecceeeeeeEEecCcceEEe-cCCcceeEEeeehhhhhhcccceeeEEEE---EEecCceEEecCHHHHHH--h-hhhh
Q 009549 5 TLDPFFFYIPVLNNQNKCFQL-DRNLGITATVLRSFIDLHKLPRIIHLIYV---ELCGNKEEVKKSAYATAR--L-WIFF 77 (532)
Q Consensus 5 ~~~~l~~y~~~~~p~~~~f~~-~~~~~~~~~~~~~~~d~~f~~~~~Di~l~---~~~~~g~~V~~d~~~Ia~--l-k~~F 77 (532)
++..-++|+.++.+.+.||.. +...-..|..+|++.|++| ++|++++ +|.++|.+| +|-++.++ . +..|
T Consensus 2 ~vs~~vLYN~~~li~r~~F~di~~~y~~~wl~ld~~~D~vy---llDi~v~~R~gyleqGllV-~~~~Kl~~hY~~s~~f 77 (536)
T KOG0500|consen 2 FVSLGVLYNMIVLIVRAAFDDIQSSYLENWLPLDYLFDFVY---LLDIIVRSRTGYLEQGLLV-KDTSKLRKHYVHSTQF 77 (536)
T ss_pred eEEEehHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhhHhcCeee-hhhHHHHHHHHHhhhh
Confidence 455667899999999999974 3333456899999999999 9999999 999999999 99999998 4 4589
Q ss_pred HHHHHhhcChhHHHHHHHhccccCCccchhHHHHHHHHHHHHHHHHhhcc--cccccchHHH--HHHHHHHH-HHHHHHH
Q 009549 78 LIDILAVLPIPQVLVMLAKSHRMSGRKFLFSMTFFLLQYVLRVIRTYGLL--TKNDSTWAIV--SFNLFLYM-HGGHVFG 152 (532)
Q Consensus 78 ~~Dlis~lP~~~~~~~~~~~~~~~~~~~~~lrl~rl~~~l~rl~r~~~~~--~~~~~~~~~~--~~~l~~~~-l~~H~~a 152 (532)
.+|++|.+|+|+++.+. ++... .|+.|| .|++|+...+ ++.++.|+++ +.+|+.+. ++.||.|
T Consensus 78 ~lD~l~liP~D~l~~~~-------~~~~~-~r~nRl----lk~yRl~~F~~rTetrT~~Pn~fri~~lv~~~~ilfHWNa 145 (536)
T KOG0500|consen 78 KLDVLSLIPLDLLLFKD-------GSASL-ERLNRL----LKIYRLFEFFDRTETRTTYPNAFRISKLVHYCLILFHWNA 145 (536)
T ss_pred hhhhhhhcchhHHhhcC-------CcchH-HHHHHH----HHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhh
Confidence 99999999999998764 22221 344443 5556655554 3445778886 56777554 4899999
Q ss_pred HHHHhHhhhhhhhhhhhhhhccCcccCCcccccCCCccccccccccCCCCCCCCCcccchhhHHhhhcCcccCCChhHHH
Q 009549 153 ALWYFLAIEKVTACWKKTCINHHIRCSSRSFYCDDSLRDYKFLDEFCPITTGNKTNYDFGLFEDALQSGIVGVTDFPQKF 232 (532)
Q Consensus 153 C~w~~i~~~~~~~~w~~~c~~~~~~c~~~~~~~~~~~~~~sWi~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~~Y 232 (532)
|+||+++. | . +...++|.... -.++.|+ . ....+...+|
T Consensus 146 ClYf~iS~------~---------------~----g~~~d~wvY~~-------i~d~~~~---~------c~~~n~~ReY 184 (536)
T KOG0500|consen 146 CLYFLISK------A---------------I----GFTTDDWVYPK-------INDPEFA---T------CDAGNLTREY 184 (536)
T ss_pred HHHHhhhH------h---------------c----CccccccccCC-------ccCcccc---c------cchhHHHHHH
Confidence 99999995 1 0 24567798731 1112221 0 1124578999
Q ss_pred HHHHHHHHHHhhccCCCCCcCCChhhHHHHHHHHHHHHHHHHHHHhhhhhH----HHHHHHHHHHHHHhhcCCCCCCCCH
Q 009549 233 LHCLRWGLQNLSAFGQNLEASTDILDNIFAICMTNFGVVLFVFLIGKMQSD----TERSRSREQKLKEIKQGPSFGRLSS 308 (532)
Q Consensus 233 i~slYwa~~TmtTvGyGdi~p~t~~E~i~~i~~mi~G~~~~a~iig~i~~i----~~~~~~~~~~~~~i~~~m~~~~lp~ 308 (532)
+.|+||+..||||+|- -.+|.|+.|.+|.|+-.++|+++||-|+|+++++ ++...||+++|+.+++||+.+++|+
T Consensus 185 ~~S~YWStLTlTTiGe-~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnmna~r~EFq~~mDGiK~YM~~RkV~~ 263 (536)
T KOG0500|consen 185 LYSLYWSTLTLTTIGE-QPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNMNAARTEFQAKMDGIKQYMRYRKVPK 263 (536)
T ss_pred HHHHHHHhhhhhhccC-CCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhhhHHHHHHHHHHHHHHHHHHHhcccH
Confidence 9999999999999997 4568889999999999999999999999999998 5566899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCHHHHHHhCChhHHHHHHHHHhHHHhhcCcccccCCHHHHHHHHhccceeEecCCceEee
Q 009549 309 RLQQKIKNYKQQNWIDDKHADVVNLVNNLPQGLRSQVKGELGTELLRNVKEFERWGEKELVDLSDCLNPVFFTDRTRIFR 388 (532)
Q Consensus 309 ~L~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~~i~~~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~ 388 (532)
.|+.||.+||+|.|.+++..||+++++.||+.||.+|+.+++.+.++++++|+++++.++.+++..++++.|.|||+|++
T Consensus 264 ~lq~rVikwfdYlwa~~~~~DEeevl~~LP~kL~aeIA~nvh~dTLkkV~iF~~ce~~lL~elVLklk~qvfSPgDyICr 343 (536)
T KOG0500|consen 264 ALQTRVIKWFDYLWAHKKIVDEEEVLKLLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLVELVLKLKPQVFSPGDYICR 343 (536)
T ss_pred HHHHHHHHHHHHHHhccccccHHHHHHhCCHHHHhHhHHHHHHHHHHhhhHHHhcchhHHHHHHHHhcceeeCCCCeEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeechhhhhhhhhhcCCCCCCCCCCccceEEEcceEE
Q 009549 389 EGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCGEELIAWAQQKVDNPSSSNLPISTTTIQALTEVE 468 (532)
Q Consensus 389 ~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~l~~~~~~l~~~~~~~~~~r~~tv~a~t~~~ 468 (532)
+||.+.+||+|.+|.+++ + .++|++ ....+++|++|||+++ +..+.+.++++|++++++..+++
T Consensus 344 KGdvgkEMyIVk~G~L~V--------v-~dDg~t-~~~~L~~G~~FGEisI------lni~g~~~gNRRtanvrSvGYSD 407 (536)
T KOG0500|consen 344 KGDVGKEMYIVKEGKLAV--------V-ADDGVT-VFVTLKAGSVFGEISI------LNIKGNKNGNRRTANVRSVGYSD 407 (536)
T ss_pred cCcccceEEEEEccEEEE--------E-ecCCcE-EEEEecCCceeeeeEE------EEEcCcccCCcceeeeeeeccce
Confidence 999999999999999999 4 344444 6899999999999999 66665667889999999999999
Q ss_pred EEEeCHHHHHHHHHHchHHH
Q 009549 469 GFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 469 l~~L~~~~f~~ll~~~P~~~ 488 (532)
+++|+|+|+.+.+++||+.+
T Consensus 408 lfvLskdDl~~aL~eYP~a~ 427 (536)
T KOG0500|consen 408 LFVLSKDDLWEALSEYPDAR 427 (536)
T ss_pred eeEeeHHHHHHHHHhCCHHH
Confidence 99999999999999999987
No 3
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=100.00 E-value=1.3e-64 Score=571.83 Aligned_cols=409 Identities=17% Similarity=0.228 Sum_probs=331.8
Q ss_pred eecceeeeeeEEecCcceEEecCCcceeEEeeehhhhhhcccceeeEEEE---EEec--CceEEecCHHHHHH--hhhhh
Q 009549 5 TLDPFFFYIPVLNNQNKCFQLDRNLGITATVLRSFIDLHKLPRIIHLIYV---ELCG--NKEEVKKSAYATAR--LWIFF 77 (532)
Q Consensus 5 ~~~~l~~y~~~~~p~~~~f~~~~~~~~~~~~~~~~~d~~f~~~~~Di~l~---~~~~--~g~~V~~d~~~Ia~--lk~~F 77 (532)
++..+++|+++++|+++||..... ...+.++|.++|++| ++||+++ +|.+ +|.+| +||++|++ +|+||
T Consensus 67 ~~~~~~~y~~~~~p~~~~F~~~~~-~~~~~~~d~i~~~~F---~iDi~l~f~~ay~d~~~~~lV-~d~~~I~~~Yl~~~f 141 (823)
T PLN03192 67 LMVVLVAYSAWVYPFEVAFLNASP-KRGLEIADNVVDLFF---AVDIVLTFFVAYIDPRTQLLV-RDRKKIAVRYLSTWF 141 (823)
T ss_pred HHHHHHHHHHHHHHHHHHeeCCCC-CCCeeeHHHHHHHHH---HHHHHhheeEEEEeCCCcEEE-eCHHHHHHHHHHHhH
Confidence 345677999999999999964432 346889999999999 9999998 4443 35789 99999999 99999
Q ss_pred HHHHHhhcChhHHHHHHHhccccCCccch-hHHHHHHHHHHHHHHHHhhcccccc--cchHHHHHHHH-HHHHHHHHHHH
Q 009549 78 LIDILAVLPIPQVLVMLAKSHRMSGRKFL-FSMTFFLLQYVLRVIRTYGLLTKND--STWAIVSFNLF-LYMHGGHVFGA 153 (532)
Q Consensus 78 ~~Dlis~lP~~~~~~~~~~~~~~~~~~~~-~lrl~rl~~~l~rl~r~~~~~~~~~--~~~~~~~~~l~-~~~l~~H~~aC 153 (532)
++|++|++|++++.... .......... .++++|++ |+.|+.+....+.+.. +.+...+.+++ +.++++||+||
T Consensus 142 ~~Dlis~lP~~~i~~~~--~~~~~~~~~~~~l~llrl~-Rl~ri~~~~~~le~~~~~~~~~~~~~kli~~~l~~~H~~aC 218 (823)
T PLN03192 142 LMDVASTIPFQALAYLI--TGTVKLNLSYSLLGLLRFW-RLRRVKQLFTRLEKDIRFSYFWIRCARLLSVTLFLVHCAGC 218 (823)
T ss_pred HHHHHHHhHHHHHHHHh--cCCccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999875543 1111100111 14455444 2333333333332210 11111234544 44458999999
Q ss_pred HHHhHhhhhhhhhhhhhhhccCcccCCcccccCCCccccccccccCCCCCCCCCcccchhhHHhhhcCcccCCChhHHHH
Q 009549 154 LWYFLAIEKVTACWKKTCINHHIRCSSRSFYCDDSLRDYKFLDEFCPITTGNKTNYDFGLFEDALQSGIVGVTDFPQKFL 233 (532)
Q Consensus 154 ~w~~i~~~~~~~~w~~~c~~~~~~c~~~~~~~~~~~~~~sWi~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~~Yi 233 (532)
+||+++.. + ...+.+|+....+ + ..+.++|.+|+
T Consensus 219 ~~y~i~~~--------------------~-----~~~~~~Wi~~~~~---------~------------~~~~s~~~~Yi 252 (823)
T PLN03192 219 LYYLIADR--------------------Y-----PHQGKTWIGAVIP---------N------------FRETSLWIRYI 252 (823)
T ss_pred HHHHHHhh--------------------c-----CCCCCchHHHhhh---------c------------cccCcHHHHHH
Confidence 99999831 0 1235689864211 1 13678999999
Q ss_pred HHHHHHHHHhhccCCCCCcCCChhhHHHHHHHHHHHHHHHHHHHhhhhhH----HHHHHHHHHHHHHhhcCCCCCCCCHH
Q 009549 234 HCLRWGLQNLSAFGQNLEASTDILDNIFAICMTNFGVVLFVFLIGKMQSD----TERSRSREQKLKEIKQGPSFGRLSSR 309 (532)
Q Consensus 234 ~slYwa~~TmtTvGyGdi~p~t~~E~i~~i~~mi~G~~~~a~iig~i~~i----~~~~~~~~~~~~~i~~~m~~~~lp~~ 309 (532)
+|+|||++|||||||||++|.|..|+++++++|++|+++|||+||+++++ .++..+|+++++.+++||+++++|++
T Consensus 253 ~slYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~~~~~~~~f~~~~~~~~~ym~~~~lp~~ 332 (823)
T PLN03192 253 SAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPR 332 (823)
T ss_pred HHHHHHHHHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 99999999999999999999999999999999999999999999999998 55677899999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCHHHHHHhCChhHHHHHHHHHhHHHhhcCcccccCCHHHHHHHHhccceeEecCCceEeec
Q 009549 310 LQQKIKNYKQQNWIDDKHADVVNLVNNLPQGLRSQVKGELGTELLRNVKEFERWGEKELVDLSDCLNPVFFTDRTRIFRE 389 (532)
Q Consensus 310 L~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~~i~~~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~ 389 (532)
||+||++|+++.|+. ++.+++++++.||++||.++..+++.+.++++++|++++++++.+++..++++.|+|||.|+.+
T Consensus 333 lq~ri~~y~~~~~~~-~~~~~~~~l~~Lp~~Lr~~i~~~l~~~~l~~~~lF~~~s~~~l~~L~~~~~~~~~~pge~I~~q 411 (823)
T PLN03192 333 LKDQILAYMCLRFKA-ESLNQQQLIDQLPKSICKSICQHLFLPVVEKVYLFKGVSREILLLLVTKMKAEYIPPREDVIMQ 411 (823)
T ss_pred HHHHHHHHHHHHHhh-ccccHHHHHHHcCHHHHHHHHHHHHHHHHhhCcchhcCCHHHHHHHHHhhheeeeCCCCEEEEC
Confidence 999999999999985 4578899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeechhhhhhhhhhcCCCCCCCCCCccceEEEcceEEE
Q 009549 390 GDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCGEELIAWAQQKVDNPSSSNLPISTTTIQALTEVEG 469 (532)
Q Consensus 390 Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~l~~~~~~l~~~~~~~~~~r~~tv~a~t~~~l 469 (532)
||.++++|||.+|+|++ +..+++++..+..+++|++|||.++ +...+ ++++++|.+.|++
T Consensus 412 ge~~~~lY~I~~G~V~i--------~~~~~~~e~~l~~l~~Gd~FGE~~~------l~~~p------~~~t~ra~~~s~l 471 (823)
T PLN03192 412 NEAPDDVYIVVSGEVEI--------IDSEGEKERVVGTLGCGDIFGEVGA------LCCRP------QSFTFRTKTLSQL 471 (823)
T ss_pred CCCCceEEEEEecEEEE--------EEecCCcceeeEEccCCCEecchHH------hcCCC------CCCeEEEcccEEE
Confidence 99999999999999999 4333343337889999999999999 54443 7899999999999
Q ss_pred EEeCHHHHHHHHHHchHHH
Q 009549 470 FYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 470 ~~L~~~~f~~ll~~~P~~~ 488 (532)
+.|++++|.++++++|+..
T Consensus 472 l~l~~~~f~~ll~~~p~d~ 490 (823)
T PLN03192 472 LRLKTSTLIEAMQTRQEDN 490 (823)
T ss_pred EEEEHHHHHHHHHHhhHHH
Confidence 9999999999999999987
No 4
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.8e-64 Score=503.69 Aligned_cols=423 Identities=18% Similarity=0.290 Sum_probs=354.2
Q ss_pred ecceeeeeeEEecCcceEEecCCcceeEEeeehhhhhhcccceeeEEEE----EEecCceEEecCHHHHHH--hhhhhHH
Q 009549 6 LDPFFFYIPVLNNQNKCFQLDRNLGITATVLRSFIDLHKLPRIIHLIYV----ELCGNKEEVKKSAYATAR--LWIFFLI 79 (532)
Q Consensus 6 ~~~l~~y~~~~~p~~~~f~~~~~~~~~~~~~~~~~d~~f~~~~~Di~l~----~~~~~g~~V~~d~~~Ia~--lk~~F~~ 79 (532)
+.+|.||+|+++||+++|.........|.++|.++|+|| ++||++| ++-..|++| .||+.|++ +|+||++
T Consensus 224 IL~LTFYTAimVPyNvaFKnk~~~~vs~lvvDSiVDVIF---~vDIvLNFHTTFVGPgGEVv-sdPkvIRmNYlKsWFvI 299 (971)
T KOG0501|consen 224 ILILTFYTAIMVPYNVAFKNKQRNNVSWLVVDSIVDVIF---FVDIVLNFHTTFVGPGGEVV-SDPKVIRMNYLKSWFVI 299 (971)
T ss_pred HHHHHHHHHheeeeeeeecccccCceeEEEecchhhhhh---hhhhhhhcceeeecCCCcee-cChhHHhHHHHHHHHHH
Confidence 457889999999999999988766788999999999999 9999999 555689999 99999999 9999999
Q ss_pred HHHhhcChhHHHHHHHhccccCCccchh--HHHHHHHHHHHHHHHHhhcccccccchHHHHHHHH--HHHHHHHHHHHHH
Q 009549 80 DILAVLPIPQVLVMLAKSHRMSGRKFLF--SMTFFLLQYVLRVIRTYGLLTKNDSTWAIVSFNLF--LYMHGGHVFGALW 155 (532)
Q Consensus 80 Dlis~lP~~~~~~~~~~~~~~~~~~~~~--lrl~rl~~~l~rl~r~~~~~~~~~~~~~~~~~~l~--~~~l~~H~~aC~w 155 (532)
|++||+|+|.+..+- ..-++..++. ||++|| +||-|+.+.++.+ -.|..+++.|+ .|.+++||+||+|
T Consensus 300 DLLSCLPYDi~naF~---~~degI~SLFSaLKVVRL----LRLGRVaRKLD~Y-lEYGAA~LvLLlC~y~lvAHWlACiW 371 (971)
T KOG0501|consen 300 DLLSCLPYDIFNAFE---RDDEGIGSLFSALKVVRL----LRLGRVARKLDHY-LEYGAAVLVLLLCVYGLVAHWLACIW 371 (971)
T ss_pred HHHhcccHHHHHHhh---cccccHHHHHHHHHHHHH----HHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999887764 1123444554 888876 5666666666542 22444444433 7788999999999
Q ss_pred HhHhhhhhhhhhhhhhhccCcccCCcccccCCCccccccccccCCCCCCCCCcccchhhHHhhhc--CcccCCChhHHHH
Q 009549 156 YFLAIEKVTACWKKTCINHHIRCSSRSFYCDDSLRDYKFLDEFCPITTGNKTNYDFGLFEDALQS--GIVGVTDFPQKFL 233 (532)
Q Consensus 156 ~~i~~~~~~~~w~~~c~~~~~~c~~~~~~~~~~~~~~sWi~~~~~~~~~~~~~~~~g~y~~~~~~--~~~~~~~~~~~Yi 233 (532)
|.+|-... ....+.....++|+.+... +.++.+.|. +.+ ..+..+|.-+.|+
T Consensus 372 ysIGd~ev------------------~~~~~n~i~~dsWL~kLa~---~~~tpY~~~-----~s~~~~~~gGPSr~S~Yi 425 (971)
T KOG0501|consen 372 YSIGDYEV------------------RDEMDNTIQPDSWLWKLAN---DIGTPYNYN-----LSNKGTLVGGPSRTSAYI 425 (971)
T ss_pred eeccchhe------------------ecccccccccchHHHHHHh---hcCCCceec-----cCCCceeecCCcccceeh
Confidence 99993110 0111113456899987654 234444442 111 1233677788999
Q ss_pred HHHHHHHHHhhccCCCCCcCCChhhHHHHHHHHHHHHHHHHHHHhhhhhH----HHHHHHHHHHHHHhhcCCCCCCCCHH
Q 009549 234 HCLRWGLQNLSAFGQNLEASTDILDNIFAICMTNFGVVLFVFLIGKMQSD----TERSRSREQKLKEIKQGPSFGRLSSR 309 (532)
Q Consensus 234 ~slYwa~~TmtTvGyGdi~p~t~~E~i~~i~~mi~G~~~~a~iig~i~~i----~~~~~~~~~~~~~i~~~m~~~~lp~~ 309 (532)
.|+||.++.|||||+|+|.|.|+.|++|++++|++|+++||-|+|+++.| .++...|.+.++.+.+||+-..+|+.
T Consensus 426 ssLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~QQM~s~T~rYHeMlnnVReFlKL~evPK~ 505 (971)
T KOG0501|consen 426 SSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTIIQQMTSNTNRYHEMLNNVREFLKLYEVPKG 505 (971)
T ss_pred hhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccHH
Confidence 99999999999999999999999999999999999999999999999998 55667899999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCHHHHHHhCChhHHHHHHHHHhHHHhhcCcccccCCHHHHHHHHhccceeEecCCceEeec
Q 009549 310 LQQKIKNYKQQNWIDDKHADVVNLVNNLPQGLRSQVKGELGTELLRNVKEFERWGEKELVDLSDCLNPVFFTDRTRIFRE 389 (532)
Q Consensus 310 L~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~~i~~~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~ 389 (532)
|.+||.+|.--.|...+|+|.+++|...|..+|.+|..|++++.++.+|-|+-.|+.++++|+..++.....|||.|+..
T Consensus 506 LsERVMDYvVSTWaMtkGiDTeKVL~~CPKDMkADICVHLNRKVFnEHpaFRLASDGCLRaLAm~f~~~H~APGDLlYHt 585 (971)
T KOG0501|consen 506 LSERVMDYVVSTWAMTKGIDTEKVLGYCPKDMKADICVHLNRKVFNEHPAFRLASDGCLRALAMEFQTNHCAPGDLLYHT 585 (971)
T ss_pred HHHHHHHHHHHHhhhhcCcCHHHHhhhCccccccceeeecchhhhccCcceeeccchhHHHHHHHHHhccCCCcceeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeechhhhhhhhhhcCCCCCCCCCCccceEEEcceEEE
Q 009549 390 GDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCGEELIAWAQQKVDNPSSSNLPISTTTIQALTEVEG 469 (532)
Q Consensus 390 Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~l~~~~~~l~~~~~~~~~~r~~tv~a~t~~~l 469 (532)
||..|.++||++|++++.++++ +++++++||.||+... -.. ...++-++++|+|+|++
T Consensus 586 GESvDaLcFvVsGSLEVIQDDE------------VVAILGKGDVFGD~FW------K~~----t~~qs~ANVRALTYcDL 643 (971)
T KOG0501|consen 586 GESVDALCFVVSGSLEVIQDDE------------VVAILGKGDVFGDEFW------KEN----TLGQSAANVRALTYCDL 643 (971)
T ss_pred CCccceEEEEEecceEEeecCc------------EEEEeecCccchhHHh------hhh----hhhhhhhhhhhhhhhhh
Confidence 9999999999999999943222 7999999999998776 111 11235789999999999
Q ss_pred EEeCHHHHHHHHHHchHHH
Q 009549 470 FYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 470 ~~L~~~~f~~ll~~~P~~~ 488 (532)
..|.|+.+.++++-|-.+.
T Consensus 644 H~IKrd~Ll~VLdFYtAFa 662 (971)
T KOG0501|consen 644 HMIKRDKLLKVLDFYTAFA 662 (971)
T ss_pred hHHhHHHHHHHHHHHHHHH
Confidence 9999999999999998886
No 5
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-56 Score=449.55 Aligned_cols=405 Identities=15% Similarity=0.231 Sum_probs=339.6
Q ss_pred ecceeeeeeEEecCcceEEecCC-cceeEEeeehhhhhhcccceeeEEEE----EEecCceEEecCHHHHHH--hh-hhh
Q 009549 6 LDPFFFYIPVLNNQNKCFQLDRN-LGITATVLRSFIDLHKLPRIIHLIYV----ELCGNKEEVKKSAYATAR--LW-IFF 77 (532)
Q Consensus 6 ~~~l~~y~~~~~p~~~~f~~~~~-~~~~~~~~~~~~d~~f~~~~~Di~l~----~~~~~g~~V~~d~~~Ia~--lk-~~F 77 (532)
|...+.|+++++|.+.+|.-+.. ..-.|++.|+++|+++ ++||++- .|...|.+| .|.+..++ ++ ..|
T Consensus 235 Vtlaf~~N~w~IPlR~sfPyQT~dN~~~Wli~Dy~cDiIY---llDmlf~q~Rl~fvrgG~~i-k~kndtrk~Yl~sr~F 310 (815)
T KOG0499|consen 235 VTLAFNWNCWFIPLRLSFPYQTADNIHYWLIADYICDIIY---LLDMLFIQPRLQFVRGGDII-KDKNDTRKHYLTSRKF 310 (815)
T ss_pred HHHHHhhceeEEeeeccCCccccccchhhhhHHHHhhHHH---HHHHhhhhhhheeeeCceEE-EechHHHHHHHHhhhh
Confidence 34456899999999999987643 3446999999999999 9999985 777889999 99999999 54 489
Q ss_pred HHHHHhhcChhHHHHHHHhccccCCccchhHHHHHHHHHHHHHHHHhhccccc-ccchHHHHHHHHHHHH-HHHHHHHHH
Q 009549 78 LIDILAVLPIPQVLVMLAKSHRMSGRKFLFSMTFFLLQYVLRVIRTYGLLTKN-DSTWAIVSFNLFLYMH-GGHVFGALW 155 (532)
Q Consensus 78 ~~Dlis~lP~~~~~~~~~~~~~~~~~~~~~lrl~rl~~~l~rl~r~~~~~~~~-~~~~~~~~~~l~~~~l-~~H~~aC~w 155 (532)
-+|++|++|+|+++..+|..|. +|+-|+++ +.-++.+.+.+... .+.|...+.+...|++ +.|+.||+|
T Consensus 311 klDllsiLPldllY~~~G~~p~--------wR~~R~lK-~~sF~e~~~~Le~i~s~~y~~RV~rT~~YmlyilHinacvY 381 (815)
T KOG0499|consen 311 KLDLLSILPLDLLYLFFGFNPM--------WRANRMLK-YTSFFEFNHHLESIMSKAYIYRVIRTTGYLLYILHINACVY 381 (815)
T ss_pred hhhHHhhhhHHHHHHHhccchh--------hhhhhHHH-HHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhhhHHHH
Confidence 9999999999999988742221 34444332 12222222222110 1344455666666666 999999999
Q ss_pred HhHhhhhhhhhhhhhhhccCcccCCcccccCCCccccccccccCCCCCCCCCcccchhhHHhhhcCcccCCChhHHHHHH
Q 009549 156 YFLAIEKVTACWKKTCINHHIRCSSRSFYCDDSLRDYKFLDEFCPITTGNKTNYDFGLFEDALQSGIVGVTDFPQKFLHC 235 (532)
Q Consensus 156 ~~i~~~~~~~~w~~~c~~~~~~c~~~~~~~~~~~~~~sWi~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~~Yi~s 235 (532)
|+.+. ++ +.+.+-|+.+ .-...|++|
T Consensus 382 Y~~Sa-------------yq------------glG~~rWVyd-----------------------------g~Gn~YiRC 407 (815)
T KOG0499|consen 382 YWASA-------------YQ------------GLGTTRWVYD-----------------------------GEGNEYIRC 407 (815)
T ss_pred HHHHh-------------hc------------ccccceeEEc-----------------------------CCCCceeee
Confidence 98883 11 2457889863 113569999
Q ss_pred HHHHHHHhhccCCCCCcCCChhhHHHHHHHHHHHHHHHHHHHhhhhhH----HHHHHHHHHHHHHhhcCCCCCCCCHHHH
Q 009549 236 LRWGLQNLSAFGQNLEASTDILDNIFAICMTNFGVVLFVFLIGKMQSD----TERSRSREQKLKEIKQGPSFGRLSSRLQ 311 (532)
Q Consensus 236 lYwa~~TmtTvGyGdi~p~t~~E~i~~i~~mi~G~~~~a~iig~i~~i----~~~~~~~~~~~~~i~~~m~~~~lp~~L~ 311 (532)
+|||+.|+||+|- .-.|.|..|++|..+.-+.|+++||.+||+|-.+ +.+.++|++.|++.-.||++.++|++.|
T Consensus 408 yyfa~kt~~tiG~-~P~P~~~~E~Vf~~~~w~mGVFvFslliGQmRDvi~aAt~nq~~fr~~mD~tl~ym~~~~i~kevq 486 (815)
T KOG0499|consen 408 YYFAVKTLITIGG-LPEPQTLFEIVFQLLNWFMGVFVFSLLIGQMRDVIGAATANQNYFRACMDDTLAYMNNYSIPKEVQ 486 (815)
T ss_pred hhhHHHHHHHhcC-CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 9999999999995 6778999999999999999999999999999887 5677899999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCHHHHHHhCChhHHHHHHHHHhHHHhhcCcccccCCHHHHHHHHhccceeEecCCceEeecCC
Q 009549 312 QKIKNYKQQNWIDDKHADVVNLVNNLPQGLRSQVKGELGTELLRNVKEFERWGEKELVDLSDCLNPVFFTDRTRIFREGD 391 (532)
Q Consensus 312 ~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~~i~~~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Gd 391 (532)
+||+.+|+|.|...+..||.+++..||..||.+++..++...+.++.+|++++.+.++.++.+++...|.|||+|+++||
T Consensus 487 nRVr~WyeyTW~sQr~LDEs~ll~~LP~klq~dlAi~V~y~~lSKVqLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGe 566 (815)
T KOG0499|consen 487 NRVRTWYEYTWDSQRMLDESDLLKTLPTKLQLDLAIDVNYSILSKVQLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGE 566 (815)
T ss_pred HHHHHHHHhhhhhhccccHHHHHHhcchhheeeeeEEeehhhhhHHHHhhhhHHHHHHHHHHHhhceeecCCceeeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeechhhhhhhhhhcCCCCCCCCCCccceEEEcceEEEEE
Q 009549 392 PIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCGEELIAWAQQKVDNPSSSNLPISTTTIQALTEVEGFY 471 (532)
Q Consensus 392 ~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~l~~~~~~l~~~~~~~~~~r~~tv~a~t~~~l~~ 471 (532)
++.+||+|..|+|+| ....+|.. ++..+++|+.|||+++ |... .+++|+++|+|.++|.++.
T Consensus 567 iGkEMYIIk~GqvQV--------lGGp~~~~-Vl~tL~~GsVFGEISL------Laig---G~nRRTAnV~a~Gf~nLfv 628 (815)
T KOG0499|consen 567 IGKEMYIIKHGQVQV--------LGGPDGTK-VLVTLKAGSVFGEISL------LAIG---GGNRRTANVVAHGFANLFV 628 (815)
T ss_pred ccceeEEeecceEEE--------ecCCCCCE-EEEEecccceeeeeee------eeec---CCCccchhhhhcccceeeE
Confidence 999999999999999 55555555 8999999999999999 5443 3467999999999999999
Q ss_pred eCHHHHHHHHHHchHHH--HHh-HHHHH
Q 009549 472 LLASDLKNAFIEHRRYQ--IVR-AVRLI 496 (532)
Q Consensus 472 L~~~~f~~ll~~~P~~~--~~~-a~~~i 496 (532)
|+++|+.+++..||+-+ +++ |++++
T Consensus 629 L~KkdLneil~~YP~sq~iLrkkAr~ll 656 (815)
T KOG0499|consen 629 LDKKDLNEILVHYPDSQRILRKKARVLL 656 (815)
T ss_pred ecHhHHHHHHHhCccHHHHHHHHHHHHH
Confidence 99999999999999998 443 44443
No 6
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.49 E-value=7.3e-13 Score=128.59 Aligned_cols=118 Identities=20% Similarity=0.177 Sum_probs=105.4
Q ss_pred HHHhhcCcccccCCHHHHHHHHhccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCC
Q 009549 351 TELLRNVKEFERWGEKELVDLSDCLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRY 430 (532)
Q Consensus 351 ~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~ 430 (532)
.+.++.+++|+.++++.++.+....+...|.+|+.|+++||.++.+|+|.+|.|+++ ...+|+...+..+.+
T Consensus 6 ~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~--------~~~~~~~~~i~~~~~ 77 (236)
T PRK09392 6 LIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELS--------ASSQDRETTLAILRP 77 (236)
T ss_pred HHHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEE--------EcCCCceEEEEEeCC
Confidence 457889999999999999999999999999999999999999999999999999994 333343337889999
Q ss_pred CCeechhhhhhhhhhcCCCCCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHchHHH
Q 009549 431 GDFCGEELIAWAQQKVDNPSSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 431 G~~FGe~~l~~~~~~l~~~~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
|++||+.++ +...+ +.++++|.++|+++.+++++|.+++.++|.+.
T Consensus 78 g~~~g~~~~------~~~~~------~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~ 123 (236)
T PRK09392 78 VSTFILAAV------VLDAP------YLMSARTLTRSRVLMIPAELVREAMSEDPGFM 123 (236)
T ss_pred CchhhhHHH------hCCCC------CceEEEEcCceEEEEEeHHHHHHHHHHCHHHH
Confidence 999999988 55443 68899999999999999999999999999998
No 7
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.42 E-value=2.4e-12 Score=108.93 Aligned_cols=111 Identities=30% Similarity=0.436 Sum_probs=95.8
Q ss_pred ccccCCHHHHHHHHhccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeechhh
Q 009549 359 EFERWGEKELVDLSDCLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCGEEL 438 (532)
Q Consensus 359 ~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~ 438 (532)
+|+.++++.++.++..++...+.+|++|+.+|+..+.+|+|.+|.+.+.. ...+|+...+..+.+|++||+..
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~-------~~~~g~~~~~~~~~~g~~~g~~~ 73 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYK-------LDEDGREQIVGFLGPGDLFGELA 73 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEE-------ECCCCcEEEEEecCCccCcChHH
Confidence 47889999999999999999999999999999999999999999999942 22233333788899999999998
Q ss_pred hhhhhhhcCCCCCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHchHHH
Q 009549 439 IAWAQQKVDNPSSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 439 l~~~~~~l~~~~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
+ +...+ +..+++|.++|+++.+++++|.++++++|++.
T Consensus 74 ~------~~~~~------~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~ 111 (115)
T cd00038 74 L------LGNGP------RSATVRALTDSELLVLPRSDFRRLLQEYPELA 111 (115)
T ss_pred H------hcCCC------CCceEEEcCceEEEEEeHHHHHHHHHHCcHhH
Confidence 8 43332 67899999999999999999999999999875
No 8
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.38 E-value=2.1e-12 Score=105.04 Aligned_cols=90 Identities=22% Similarity=0.328 Sum_probs=76.4
Q ss_pred eeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCC-cceeecCCCCeechhhhhhhhhhcCCCCCCCCC
Q 009549 377 PVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHN-GKKDYLRYGDFCGEELIAWAQQKVDNPSSSNLP 455 (532)
Q Consensus 377 ~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~-~~~~~l~~G~~FGe~~l~~~~~~l~~~~~~~~~ 455 (532)
++.|.+|++|+++|+.++++|||.+|.+.+. ..++... ..+..+.+|++||+.+++ ...+
T Consensus 1 ~~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~--------~~~~~~~~~~~~~~~~g~~~g~~~~~------~~~~----- 61 (91)
T PF00027_consen 1 EKTYKKGEVIYRQGDPCDHIYIILSGEVKVS--------SINEDGKEQIIFFLGPGDIFGEIELL------TGKP----- 61 (91)
T ss_dssp -EEESTTEEEEETTSBESEEEEEEESEEEEE--------EETTTSEEEEEEEEETTEEESGHHHH------HTSB-----
T ss_pred CeEECCCCEEEeCCCcCCEEEEEEECceEEE--------eceecceeeeecceeeeccccceeec------CCCc-----
Confidence 3679999999999999999999999999994 3333222 258899999999999993 3332
Q ss_pred CccceEEEcceEEEEEeCHHHHHHHHHHchH
Q 009549 456 ISTTTIQALTEVEGFYLLASDLKNAFIEHRR 486 (532)
Q Consensus 456 ~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P~ 486 (532)
+..+++|.++|+++.|++++|.++++++|+
T Consensus 62 -~~~~~~a~~~~~~~~i~~~~~~~~~~~~p~ 91 (91)
T PF00027_consen 62 -SPFTVIALTDSEVLRIPREDFLQLLQQDPE 91 (91)
T ss_dssp -BSSEEEESSSEEEEEEEHHHHHHHHHHSHH
T ss_pred -cEEEEEEccCEEEEEEeHHHHHHHHHhCcC
Confidence 688999999999999999999999999996
No 9
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.37 E-value=2.5e-11 Score=115.58 Aligned_cols=110 Identities=13% Similarity=0.183 Sum_probs=94.5
Q ss_pred ccCCHHHHHHHHhccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeechhhhh
Q 009549 361 ERWGEKELVDLSDCLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCGEELIA 440 (532)
Q Consensus 361 ~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~l~ 440 (532)
+.+|++.++.++..++...|.+|++|+.+|+.++.+|+|.+|.++++. ...+|+...+..+++|++||+.++
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~-------~~~~g~~~~~~~~~~g~~~g~~~~- 77 (211)
T PRK11753 6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLI-------KDEEGKEMILSYLNQGDFIGELGL- 77 (211)
T ss_pred CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEE-------ECCCCCEEEEEEcCCCCEEeehhh-
Confidence 347899999999999999999999999999999999999999999941 223444437888999999999988
Q ss_pred hhhhhcCCCCCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHchHHH
Q 009549 441 WAQQKVDNPSSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 441 ~~~~~l~~~~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
+.+.. ++.++++|.++|+++.+++++|.++++++|++.
T Consensus 78 -----~~~~~-----~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~ 115 (211)
T PRK11753 78 -----FEEGQ-----ERSAWVRAKTACEVAEISYKKFRQLIQVNPDIL 115 (211)
T ss_pred -----ccCCC-----CceEEEEEcCcEEEEEEcHHHHHHHHHHCHHHH
Confidence 44321 257789999999999999999999999999996
No 10
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.34 E-value=4.6e-12 Score=128.74 Aligned_cols=50 Identities=14% Similarity=0.258 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhhccCCCCCcCCChhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 009549 233 LHCLRWGLQNLSAFGQNLEASTDILDNIFAICMTNFGVVLFVFLIGKMQS 282 (532)
Q Consensus 233 i~slYwa~~TmtTvGyGdi~p~t~~E~i~~i~~mi~G~~~~a~iig~i~~ 282 (532)
-.|++||++|||||||||++|.|...++++....+.|+++.|.-|..|-+
T Consensus 379 Pa~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~ 428 (477)
T KOG3713|consen 379 PAGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIVN 428 (477)
T ss_pred cchhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhHhh
Confidence 35789999999999999999999999999999999999999876655543
No 11
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.32 E-value=3e-11 Score=102.65 Aligned_cols=112 Identities=26% Similarity=0.346 Sum_probs=95.1
Q ss_pred ccccCCHHHHHHHHhccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecC-CCCCcceeecCCCCeechh
Q 009549 359 EFERWGEKELVDLSDCLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSS-DGHNGKKDYLRYGDFCGEE 437 (532)
Q Consensus 359 ~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~-~~~~~~~~~l~~G~~FGe~ 437 (532)
+|.+++++.++.++..++...+.+|++|+++|+.++.+|||.+|.+.++ ..+ +|+...+..+.+|++||+.
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~--------~~~~~g~~~~~~~~~~g~~~g~~ 72 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVY--------KVLEDGREQILGILGPGDFFGEL 72 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEE--------EECCCCceEEEEeecCCceechh
Confidence 4788999999999999999999999999999999999999999999994 332 3333378889999999999
Q ss_pred hhhhhhhhcCCCCCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHchHHH
Q 009549 438 LIAWAQQKVDNPSSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 438 ~l~~~~~~l~~~~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
.+ +.... .++..++.|.+.|++..++.+++.+.+..+|.+.
T Consensus 73 ~~------~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 113 (120)
T smart00100 73 AL------LTNSR----RAASATAVALELATLLRIDFRDFLQLLQENPQLL 113 (120)
T ss_pred hh------ccCCC----cccceEEEEEeeEEEEccCHHHHHHHHHHhHHHH
Confidence 98 41110 1257889999999999999999999999999875
No 12
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.29 E-value=9.4e-11 Score=111.19 Aligned_cols=115 Identities=21% Similarity=0.264 Sum_probs=96.9
Q ss_pred hcCcccccCCHHHHHHHHhccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCee
Q 009549 355 RNVKEFERWGEKELVDLSDCLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFC 434 (532)
Q Consensus 355 ~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~F 434 (532)
...+.|...+......+....+...+++|+.|+++||.++.+|+|.+|.+.++. ...+|+...+..+++|++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~-------~~~~G~~~~~~~~~~g~~f 75 (214)
T COG0664 3 KENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYA-------NTEDGREIILGFLGPGDFF 75 (214)
T ss_pred ccccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEE-------ECCCCcEEEEEEecCCchh
Confidence 345666667777777888899999999999999999999999999999999942 2234544477889999999
Q ss_pred chhhhhhhhhhcCCCCCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHchHHH
Q 009549 435 GEELIAWAQQKVDNPSSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 435 Ge~~l~~~~~~l~~~~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
|+.++ +...+ ++++++|.++|+++.+++++|.+++.+.|.+.
T Consensus 76 g~~~l------~~~~~------~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~l~ 117 (214)
T COG0664 76 GELAL------LGGDP------RSASAVALTDVEVLEIPRKDFLELLAESPKLA 117 (214)
T ss_pred hhHHH------hcCCC------ccceEEEcceEEEEEecHHHHHHHHhhCcHHH
Confidence 99999 54432 78999999999999999999999998888887
No 13
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.28 E-value=8.4e-11 Score=121.00 Aligned_cols=157 Identities=15% Similarity=0.174 Sum_probs=123.7
Q ss_pred HHHhhcCcccccCCHHHHHHHHhccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCC
Q 009549 351 TELLRNVKEFERWGEKELVDLSDCLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRY 430 (532)
Q Consensus 351 ~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~ 430 (532)
.+++.++|.|+.++++.+.+|...++...|.+||+|...|.+.+.||+|.+|.|+++ . ++|. .+..+..
T Consensus 6 ~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~--------~-~~g~--v~~~~~~ 74 (610)
T COG2905 6 DQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVR--------S-DGGE--VLDRLAA 74 (610)
T ss_pred HHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEE--------c-CCCe--eeeeecc
Confidence 568899999999999999999999999999999999999999999999999999993 2 2332 6899999
Q ss_pred CCeechhhhhhhhhhcCCCCCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHchHHH---HHhHHHHHHHHHhHhHHHH
Q 009549 431 GDFCGEELIAWAQQKVDNPSSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHRRYQ---IVRAVRLIQTFWRFRRILR 507 (532)
Q Consensus 431 G~~FGe~~l~~~~~~l~~~~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P~~~---~~~a~~~iq~~~~~~~~~~ 507 (532)
|+.||-.+++.. .+ ......|.+++-+|.|+++.|.++.+++|+++ ....++.++.... +...
T Consensus 75 gdlFg~~~l~~~------~~------~~~~~~aeedsl~y~lp~s~F~ql~~~n~~f~~ff~~~~akR~~~~~~--~~~e 140 (610)
T COG2905 75 GDLFGFSSLFTE------LN------KQRYMAAEEDSLCYLLPKSVFMQLMEENPEFADFFLRSLAKRLRDIAD--RLAE 140 (610)
T ss_pred Cccccchhhccc------CC------CcceeEeeccceEEecCHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH--HHHh
Confidence 999999998333 21 13366788899999999999999999999998 3233333332222 1222
Q ss_pred --HHHHhHhhhhhhcCCCCccccCCCC
Q 009549 508 --FKMNQRRSINLENSGDVAFTTNQTS 532 (532)
Q Consensus 508 --~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (532)
..-...+++++.....+.-+++++|
T Consensus 141 q~~~e~~~trv~~~~~~~~~~v~~~~~ 167 (610)
T COG2905 141 QGESEFILTRVGEVKTLPAVTVSPQAS 167 (610)
T ss_pred hccchHHHHHHHHHhcCCCcccCccCc
Confidence 2444567777888888888888876
No 14
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.26 E-value=7e-11 Score=113.87 Aligned_cols=104 Identities=20% Similarity=0.249 Sum_probs=88.6
Q ss_pred HHHHHHHhccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeechhhhhhhhhh
Q 009549 366 KELVDLSDCLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCGEELIAWAQQK 445 (532)
Q Consensus 366 ~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~l~~~~~~ 445 (532)
-|..++....+...|.+|+.|+.+||.++++|+|.+|.|.++. ...+|+...+..+.+|++||+.++
T Consensus 22 ~~~~~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~-------~~~~G~e~~~~~~~~g~~~G~~~~------ 88 (226)
T PRK10402 22 CFSFDVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYA-------TLANGKVSLIDFFAAPCFIGEIEL------ 88 (226)
T ss_pred cCCHHHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEE-------ECCCCCEeeeeecCCCCeEEeehh------
Confidence 3344688889999999999999999999999999999999942 233455447888999999999987
Q ss_pred cCCCCCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHchHHH
Q 009549 446 VDNPSSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 446 l~~~~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
+...+ ++++++|.++|+++.+++++|.+++..+|.+.
T Consensus 89 ~~~~~------~~~~~~A~~~~~i~~i~~~~~~~ll~~~p~~~ 125 (226)
T PRK10402 89 IDKDH------ETKAVQAIEECWCLALPMKDCRPLLLNDALFL 125 (226)
T ss_pred hcCCC------CCccEEEeccEEEEEEEHHHHHHHHhcCHHHH
Confidence 44443 68899999999999999999999999999987
No 15
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.25 E-value=1.3e-10 Score=112.75 Aligned_cols=115 Identities=16% Similarity=0.179 Sum_probs=94.2
Q ss_pred hhcCcccccCCHHHHHHHHhccce-eEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCC
Q 009549 354 LRNVKEFERWGEKELVDLSDCLNP-VFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGD 432 (532)
Q Consensus 354 l~~i~~F~~~s~~~l~~l~~~l~~-~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~ 432 (532)
+++.+.|..++++.++.|....+. ..|.+|+.|+++||.++++|+|.+|.|.++. ...+|+..++....+|+
T Consensus 15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~-------~~~~G~e~i~~~~~~gd 87 (235)
T PRK11161 15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYT-------ITEQGDEQITGFHLAGD 87 (235)
T ss_pred ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEE-------ECCCCCEEEEEeccCCc
Confidence 344455556999999999988864 6799999999999999999999999999942 22344443677789999
Q ss_pred eechhhhhhhhhhcCCCCCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHchHHH
Q 009549 433 FCGEELIAWAQQKVDNPSSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 433 ~FGe~~l~~~~~~l~~~~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
+||+.++ +... .+.+++|.++|+++.+++++|.+++..+|++.
T Consensus 88 ~~g~~~~------~~~~-------~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~~~ 130 (235)
T PRK11161 88 LVGFDAI------GSGQ-------HPSFAQALETSMVCEIPFETLDDLSGKMPKLR 130 (235)
T ss_pred eeccccc------cCCC-------CcceEEEeccEEEEEEEHHHHHHHHHHChHHH
Confidence 9998765 3322 35689999999999999999999999999997
No 16
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.21 E-value=2.5e-11 Score=123.12 Aligned_cols=123 Identities=21% Similarity=0.316 Sum_probs=105.2
Q ss_pred HHhHHHhhcCcccccCCHHHHHHHHhccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceee
Q 009549 348 ELGTELLRNVKEFERWGEKELVDLSDCLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDY 427 (532)
Q Consensus 348 ~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~ 427 (532)
+-+.++++.+|+|++++++.+..++..++...|..|++|+++|+.++.+|+|.+|+|.+....+. .++...+..
T Consensus 268 ~~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~------~~q~~~lr~ 341 (732)
T KOG0614|consen 268 EQYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEG------STQPQELRT 341 (732)
T ss_pred HHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCC------CCchhHHhh
Confidence 45788999999999999999999999999999999999999999999999999999999432220 011116889
Q ss_pred cCCCCeechhhhhhhhhhcCCCCCCCCCCccceEEEcce-EEEEEeCHHHHHHHHHHchHHH
Q 009549 428 LRYGDFCGEELIAWAQQKVDNPSSSNLPISTTTIQALTE-VEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 428 l~~G~~FGe~~l~~~~~~l~~~~~~~~~~r~~tv~a~t~-~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
+++|++|||-++ +... .|++++.|... ++++.|+|+.|.+++-...++.
T Consensus 342 l~kGd~FGE~al------~~ed------vRtAniia~~~gv~cl~lDresF~~liG~l~~l~ 391 (732)
T KOG0614|consen 342 LNKGDYFGERAL------LGED------VRTANIIAQAPGVECLTLDRESFKKLIGDLEELK 391 (732)
T ss_pred ccccchhhHHHh------hccC------ccchhhhccCCCceEEEecHHHHHHhcccHHHhh
Confidence 999999999999 5544 38999999997 9999999999999987776665
No 17
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.20 E-value=1.1e-11 Score=125.76 Aligned_cols=116 Identities=22% Similarity=0.349 Sum_probs=104.0
Q ss_pred HHHHhHHHhhcCcccccCCHHHHHHHHhccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcce
Q 009549 346 KGELGTELLRNVKEFERWGEKELVDLSDCLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKK 425 (532)
Q Consensus 346 ~~~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~ 425 (532)
..++.++.+++..++++++...+++++..|.+..|.+|+.|+++||+++++|.+.+|+++|. .+|+ .+
T Consensus 148 ~k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~----------~~g~--ll 215 (732)
T KOG0614|consen 148 AKQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVS----------REGK--LL 215 (732)
T ss_pred HHHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEe----------eCCe--ee
Confidence 34566888899999999999999999999999999999999999999999999999999993 2333 68
Q ss_pred eecCCCCeechhhhhhhhhhcCCCCCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHch
Q 009549 426 DYLRYGDFCGEELIAWAQQKVDNPSSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHR 485 (532)
Q Consensus 426 ~~l~~G~~FGe~~l~~~~~~l~~~~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P 485 (532)
..+++|..|||.++ |.+.+ |+++++|+++|.++.|.|+.|..++..--
T Consensus 216 ~~m~~gtvFGELAI------Lynct------RtAsV~alt~~~lWaidR~vFq~IM~~tg 263 (732)
T KOG0614|consen 216 GKMGAGTVFGELAI------LYNCT------RTASVRALTDVRLWAIDREVFQAIMMRTG 263 (732)
T ss_pred eccCCchhhhHHHH------HhCCc------chhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999 66664 89999999999999999999999987543
No 18
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.19 E-value=2.6e-11 Score=118.03 Aligned_cols=111 Identities=15% Similarity=0.164 Sum_probs=97.4
Q ss_pred HHHhhcCcccccCCHHHHHHHHhccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCC
Q 009549 351 TELLRNVKEFERWGEKELVDLSDCLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRY 430 (532)
Q Consensus 351 ~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~ 430 (532)
.+.+++.-+|.+++++.+.+++..|.+..+..|+.|+++||.++.+|+|.+|+++++..+ + .+..+++
T Consensus 121 ~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv~~-----------~-~v~~~~~ 188 (368)
T KOG1113|consen 121 EEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYVNG-----------T-YVTTYSP 188 (368)
T ss_pred HHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEECC-----------e-EEeeeCC
Confidence 566788889999999999999999999999999999999999999999999999995321 1 6888999
Q ss_pred CCeechhhhhhhhhhcCCCCCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHch
Q 009549 431 GDFCGEELIAWAQQKVDNPSSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHR 485 (532)
Q Consensus 431 G~~FGe~~l~~~~~~l~~~~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P 485 (532)
|..|||.++ +.+. +|.+|+.|.+++.++.|+|..|..++-..-
T Consensus 189 g~sFGElAL------myn~------PRaATv~a~t~~klWgldr~SFrrIi~~s~ 231 (368)
T KOG1113|consen 189 GGSFGELAL------MYNP------PRAATVVAKSLKKLWGLDRTSFRRIIMKSC 231 (368)
T ss_pred CCchhhhHh------hhCC------CcccceeeccccceEEEeeceeEEEeeccc
Confidence 999999999 4444 389999999999999999999987765443
No 19
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.17 E-value=1.6e-10 Score=91.87 Aligned_cols=53 Identities=19% Similarity=0.370 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHhhccCCCCCcCCChhhHHHHHHHHHHHHHHHHHHHhhhhhH
Q 009549 231 KFLHCLRWGLQNLSAFGQNLEASTDILDNIFAICMTNFGVVLFVFLIGKMQSD 283 (532)
Q Consensus 231 ~Yi~slYwa~~TmtTvGyGdi~p~t~~E~i~~i~~mi~G~~~~a~iig~i~~i 283 (532)
.|..|+||+++|+||+||||+.|.++.+++++++.+++|..++++.++.+++.
T Consensus 24 ~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~ 76 (79)
T PF07885_consen 24 SFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASV 76 (79)
T ss_dssp SHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999998875
No 20
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.14 E-value=2.9e-10 Score=119.41 Aligned_cols=116 Identities=16% Similarity=0.237 Sum_probs=98.1
Q ss_pred HHHhhcCcccccCCHHHHHHHHhccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCC
Q 009549 351 TELLRNVKEFERWGEKELVDLSDCLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRY 430 (532)
Q Consensus 351 ~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~ 430 (532)
.+.++++++|++++++.++.++..++...|.+||+|+++||.++.+|+|.+|.|+++. ...+|. ..+..+++
T Consensus 7 ~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~-------~~~~ge-~~l~~l~~ 78 (413)
T PLN02868 7 VEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSG-------PAEEES-RPEFLLKR 78 (413)
T ss_pred HHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEE-------ECCCCc-EEEEEeCC
Confidence 4567899999999999999999999999999999999999999999999999999942 122332 26888999
Q ss_pred CCeechhhhhhhhhhcCCCCCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHchHHH
Q 009549 431 GDFCGEELIAWAQQKVDNPSSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 431 G~~FGe~~l~~~~~~l~~~~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
|++||+. + .... +.++++|.++|+++.|++++|..+...++...
T Consensus 79 Gd~fG~~-l------~~~~-------~~~~~~A~~d~~v~~ip~~~~~~~~~~~~~~~ 122 (413)
T PLN02868 79 YDYFGYG-L------SGSV-------HSADVVAVSELTCLVLPHEHCHLLSPKSIWDS 122 (413)
T ss_pred CCEeehh-h------CCCC-------cccEEEECCCEEEEEEcHHHHhhhcccccccc
Confidence 9999975 5 2222 68899999999999999999998888766543
No 21
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=99.07 E-value=2e-09 Score=100.83 Aligned_cols=89 Identities=19% Similarity=0.210 Sum_probs=73.9
Q ss_pred CceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeechhhhhhhhhhcCCCCCCCCCCccceEE
Q 009549 383 RTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCGEELIAWAQQKVDNPSSSNLPISTTTIQ 462 (532)
Q Consensus 383 ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~l~~~~~~l~~~~~~~~~~r~~tv~ 462 (532)
|+.|+++||.++.+|+|.+|.|+++. ...+|+...+..+++|++||+.++ +...+ .++..+++
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~~-------~~~~G~e~~l~~~~~g~~~G~~~~------~~~~~----~~~~~~~~ 63 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLSR-------VYESGEEITVALLRENSVFGVLSL------ITGHR----SDRFYHAV 63 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEEE-------eCCCCcEeeeEEccCCCEeeeeee------ccCCC----CccceEEE
Confidence 78999999999999999999999942 233444436889999999999988 44331 11357899
Q ss_pred EcceEEEEEeCHHHHHHHHHHchHHH
Q 009549 463 ALTEVEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 463 a~t~~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
|.++|+++.+++++|.+++.++|++.
T Consensus 64 A~~~~~v~~i~~~~~~~l~~~~p~l~ 89 (193)
T TIGR03697 64 AFTRVELLAVPIEQVEKAIEEDPDLS 89 (193)
T ss_pred EecceEEEEeeHHHHHHHHHHChHHH
Confidence 99999999999999999999999998
No 22
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.06 E-value=1e-10 Score=109.56 Aligned_cols=182 Identities=17% Similarity=0.206 Sum_probs=104.4
Q ss_pred eehhhhhhcccceeeEEEE-EEec--CceEEecCHHHHHHhhhhhHHHHHhhcChhHHHHHHHhccccCCc---cch-hH
Q 009549 36 LRSFIDLHKLPRIIHLIYV-ELCG--NKEEVKKSAYATARLWIFFLIDILAVLPIPQVLVMLAKSHRMSGR---KFL-FS 108 (532)
Q Consensus 36 ~~~~~d~~f~~~~~Di~l~-~~~~--~g~~V~~d~~~Ia~lk~~F~~Dlis~lP~~~~~~~~~~~~~~~~~---~~~-~l 108 (532)
+|.+++++| .+|++++ .... +.+.. .+.|.++|+++++|........ ..... ... .+
T Consensus 2 ~~~~~~~~f---~~e~~l~~~~~~~~~~~y~---------~~~~~~~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 65 (200)
T PF00520_consen 2 LEIIFDVIF---ILEIVLRFFALGFKRRRYF---------RSWWNWFDFISVIPSIVSVILR----SYGSASAQSLLRIF 65 (200)
T ss_dssp HHHHHHHHH---HHHHHHHHHTCCCG-GCCC---------CSHHHHHHHHHHHHHCCHHCCH----CSS--HHCHCHHHH
T ss_pred ChHHHHHHH---HHHHHHHHHHhccHHHHHh---------cChhhccccccccccccccccc----ccccccccceEEEE
Confidence 578899999 9999998 2111 12222 3457889999999996554332 11111 111 13
Q ss_pred HHHHHHHHHHHHHHHhhcccccc----cchHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhhhccCcccCCcccc
Q 009549 109 MTFFLLQYVLRVIRTYGLLTKND----STWAIVSFNLFLYMHGGHVFGALWYFLAIEKVTACWKKTCINHHIRCSSRSFY 184 (532)
Q Consensus 109 rl~rl~~~l~rl~r~~~~~~~~~----~~~~~~~~~l~~~~l~~H~~aC~w~~i~~~~~~~~w~~~c~~~~~~c~~~~~~ 184 (532)
|++|++ |++|+.|..+.+.+.. ...+.....++.++++.|+.||+++.+.......++
T Consensus 66 ~~l~~~-R~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~----------------- 127 (200)
T PF00520_consen 66 RLLRLL-RLLRLLRRFRSLRRLLRALIRSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCC----------------- 127 (200)
T ss_dssp HHHHHH-HHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS---------------------
T ss_pred Eeeccc-cccccccccccccccccccccccccccccccccccccccccchhheeccccccccc-----------------
Confidence 333333 3344444333222100 001111222224456899999999988732111000
Q ss_pred cCCCccccccccccCCCCCCCCCcccchhhHHhhhcCcccCCChhHHHHHHHHHHHHHhhccCCCCCcCC-----ChhhH
Q 009549 185 CDDSLRDYKFLDEFCPITTGNKTNYDFGLFEDALQSGIVGVTDFPQKFLHCLRWGLQNLSAFGQNLEAST-----DILDN 259 (532)
Q Consensus 185 ~~~~~~~~sWi~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~~Yi~slYwa~~TmtTvGyGdi~p~-----t~~E~ 259 (532)
..++-. .++ ....+..+.|..|+||++.++||.|+||+.+. +..+.
T Consensus 128 ------~~~~~~--------~~~---------------~~~~~~f~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~ 178 (200)
T PF00520_consen 128 ------DPTWDS--------END---------------IYGYENFDSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAV 178 (200)
T ss_dssp ---------SS---------------------------SSTHHHHSSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHH
T ss_pred ------cccccc--------ccc---------------cccccccccccccccccccccccCCccccccccccccchhHh
Confidence 000000 000 01334567799999999999999999999987 78999
Q ss_pred HHH-HHHHHHHHHHHHHHHhhh
Q 009549 260 IFA-ICMTNFGVVLFVFLIGKM 280 (532)
Q Consensus 260 i~~-i~~mi~G~~~~a~iig~i 280 (532)
++. ++..+.+.++++.++|.|
T Consensus 179 ~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 179 IFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhhHHHHHHHHHHhcC
Confidence 999 666666668899988865
No 23
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=98.99 E-value=7.1e-09 Score=100.16 Aligned_cols=97 Identities=19% Similarity=0.179 Sum_probs=80.6
Q ss_pred HHHhccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeechhhhhhhhhhcCCC
Q 009549 370 DLSDCLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCGEELIAWAQQKVDNP 449 (532)
Q Consensus 370 ~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~l~~~~~~l~~~ 449 (532)
++....+...|.+|++|+.+||.++++|+|.+|.|+++. ...+|+...+..+.+|++||+..- .
T Consensus 33 ~~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~-------~~~~G~e~i~~~~~~Gd~fG~~~~--------~- 96 (230)
T PRK09391 33 HAGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYR-------LLSDGRRQIGAFHLPGDVFGLESG--------S- 96 (230)
T ss_pred cccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEE-------ECCCCcEEEEEEecCCceecccCC--------C-
Confidence 455667899999999999999999999999999999942 223444436778899999995321 1
Q ss_pred CCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHchHHH
Q 009549 450 SSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 450 ~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
++..+++|.++|+++.+++++|.+++..+|++.
T Consensus 97 ------~~~~~~~A~~ds~v~~i~~~~f~~l~~~~p~l~ 129 (230)
T PRK09391 97 ------THRFTAEAIVDTTVRLIKRRSLEQAAATDVDVA 129 (230)
T ss_pred ------cCCeEEEEcCceEEEEEEHHHHHHHHhhChHHH
Confidence 146899999999999999999999999999997
No 24
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=98.93 E-value=1.8e-08 Score=95.25 Aligned_cols=84 Identities=21% Similarity=0.296 Sum_probs=69.2
Q ss_pred ccceeEecCCceEeecCC--CCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeechhhhhhhhhhcCCCCC
Q 009549 374 CLNPVFFTDRTRIFREGD--PIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCGEELIAWAQQKVDNPSS 451 (532)
Q Consensus 374 ~l~~~~~~~ge~I~~~Gd--~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~l~~~~~~l~~~~~ 451 (532)
..+...|.+|++|+++|| .++.+|+|.+|.|.++. ...+|++..+..+.+|++||+.++ ....
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~-------~~~~G~e~~l~~~~~Gd~~G~~~~------~~~~-- 69 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHT-------VDDEGNALTLRYVRPGEYFGEEAL------AGAE-- 69 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEE-------ECCCCCEEEEEEecCCCeechHHh------cCCC--
Confidence 457788999999999999 77999999999999942 233555547888899999999766 3322
Q ss_pred CCCCCccceEEEcceEEEEEeCHHHH
Q 009549 452 SNLPISTTTIQALTEVEGFYLLASDL 477 (532)
Q Consensus 452 ~~~~~r~~tv~a~t~~~l~~L~~~~f 477 (532)
++.++.|.++|+++.+++++|
T Consensus 70 -----~~~~~~A~~~~~v~~i~~~~~ 90 (202)
T PRK13918 70 -----RAYFAEAVTDSRIDVLNPALM 90 (202)
T ss_pred -----CCceEEEcCceEEEEEEHHHc
Confidence 578999999999999999887
No 25
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=98.88 E-value=1.4e-09 Score=111.20 Aligned_cols=89 Identities=19% Similarity=0.308 Sum_probs=69.3
Q ss_pred ChhHHHHHHHHHHHHHhhccCCCCCcCCChhhHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHhhcCCCCCC
Q 009549 227 DFPQKFLHCLRWGLQNLSAFGQNLEASTDILDNIFAICMTNFGVVLFVFLIGKMQSD-TERSRSREQKLKEIKQGPSFGR 305 (532)
Q Consensus 227 ~~~~~Yi~slYwa~~TmtTvGyGdi~p~t~~E~i~~i~~mi~G~~~~a~iig~i~~i-~~~~~~~~~~~~~i~~~m~~~~ 305 (532)
.-+..|-.|++|.+.|+|||||||.+|.|..-++++.+.-++|+.+||.--|.+++= .-+.+|.+ .=++|-++++
T Consensus 265 ~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALKVQeq~----RQKHf~rrr~ 340 (654)
T KOG1419|consen 265 DEFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALKVQEQH----RQKHFNRRRN 340 (654)
T ss_pred ccchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhhhHHHH----HHHHHHhhcc
Confidence 345789999999999999999999999999999999999999999999988888763 22221111 1134556777
Q ss_pred CCHHHHHHHHHHHH
Q 009549 306 LSSRLQQKIKNYKQ 319 (532)
Q Consensus 306 lp~~L~~rv~~y~~ 319 (532)
.-..|.+-.-+||.
T Consensus 341 pAA~LIQc~WR~ya 354 (654)
T KOG1419|consen 341 PAASLIQCAWRYYA 354 (654)
T ss_pred hHHHHHHHHHHHHh
Confidence 77777777777665
No 26
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=98.88 E-value=2.9e-10 Score=110.27 Aligned_cols=48 Identities=10% Similarity=0.199 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhhccCCCCCcCCChhhHHHHHHHHHHHHHHHHHHHhhh
Q 009549 233 LHCLRWGLQNLSAFGQNLEASTDILDNIFAICMTNFGVVLFVFLIGKM 280 (532)
Q Consensus 233 i~slYwa~~TmtTvGyGdi~p~t~~E~i~~i~~mi~G~~~~a~iig~i 280 (532)
-.|++||++|||||||||..|.|...+++..++.|.|++-.|.-+-.|
T Consensus 395 PdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVI 442 (507)
T KOG1545|consen 395 PDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVI 442 (507)
T ss_pred cccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEE
Confidence 357899999999999999999999999999999999998887755554
No 27
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=98.86 E-value=4.7e-09 Score=102.45 Aligned_cols=118 Identities=19% Similarity=0.260 Sum_probs=102.8
Q ss_pred HHHhHHHhhcCcccccCCHHHHHHHHhccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCccee
Q 009549 347 GELGTELLRNVKEFERWGEKELVDLSDCLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKD 426 (532)
Q Consensus 347 ~~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~ 426 (532)
..+|.+.|+++|+++.+.......++..+.+..|.+|+.|..+|+.++++|+|.+|+|.+.. .-++ +..
T Consensus 235 rkMy~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~--------~~~~---v~v 303 (368)
T KOG1113|consen 235 RKMYEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLK--------KRDG---VEV 303 (368)
T ss_pred hhhhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhh--------ccCC---eEE
Confidence 56889999999999999999999999999999999999999999999999999999999932 2222 333
Q ss_pred ecCCCCeechhhhhhhhhhcCCCCCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHchHH
Q 009549 427 YLRYGDFCGEELIAWAQQKVDNPSSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHRRY 487 (532)
Q Consensus 427 ~l~~G~~FGe~~l~~~~~~l~~~~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P~~ 487 (532)
.++.|++|||.++ +...+ |.++|.|.+...+..+++..|+.++.-.-++
T Consensus 304 kl~~~dyfge~al------~~~~p------r~Atv~a~~~~kc~~~dk~~ferllgpc~di 352 (368)
T KOG1113|consen 304 KLKKGDYFGELAL------LKNLP------RAATVVAKGRLKCAKLDKPRFERLLGPCQDI 352 (368)
T ss_pred EechhhhcchHHH------Hhhch------hhceeeccCCceeeeeChHHHHHHhhHHHHH
Confidence 9999999999999 55543 8899999999999999999999998755443
No 28
>PRK10537 voltage-gated potassium channel; Provisional
Probab=98.49 E-value=2.7e-06 Score=88.07 Aligned_cols=53 Identities=13% Similarity=0.249 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHhhccCCCCCcCCChhhHHHHHHHHHHHHHHHHHHHhhhhhH
Q 009549 231 KFLHCLRWGLQNLSAFGQNLEASTDILDNIFAICMTNFGVVLFVFLIGKMQSD 283 (532)
Q Consensus 231 ~Yi~slYwa~~TmtTvGyGdi~p~t~~E~i~~i~~mi~G~~~~a~iig~i~~i 283 (532)
.+..|+||+++|+|||||||+.|.|...++++++++++|..+|++.++.+...
T Consensus 168 s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p 220 (393)
T PRK10537 168 SLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGP 220 (393)
T ss_pred CHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999988763
No 29
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.48 E-value=4.2e-08 Score=100.50 Aligned_cols=132 Identities=11% Similarity=0.209 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHhhccCCCCCcCCChhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCCCCCC--C
Q 009549 230 QKFLHCLRWGLQNLSAFGQNLEASTDILDNIFAICMTNFGVVLFVFLIGKMQSDTERSRSREQKLKEIKQGPSFGRL--S 307 (532)
Q Consensus 230 ~~Yi~slYwa~~TmtTvGyGdi~p~t~~E~i~~i~~mi~G~~~~a~iig~i~~i~~~~~~~~~~~~~i~~~m~~~~l--p 307 (532)
-.|..|.|+-++||+||||||+...|...+.|.++.++.|..+||--+-.|..+.-+.++|--... .---++++ -
T Consensus 287 ltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiielignr~kyggeyk---~ehgkkhivvc 363 (1103)
T KOG1420|consen 287 LTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGEYK---AEHGKKHIVVC 363 (1103)
T ss_pred chhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHccccccCceee---hhcCCeeEEEe
Confidence 468899999999999999999999999999999999999999999988888887322222211000 00001111 1
Q ss_pred HH-HHHHHHHHHHHHhhhcC-CCC-HHHHHHhCChhHHHHHHHHHhHHHhhcCccccc--CCHHH
Q 009549 308 SR-LQQKIKNYKQQNWIDDK-HAD-VVNLVNNLPQGLRSQVKGELGTELLRNVKEFER--WGEKE 367 (532)
Q Consensus 308 ~~-L~~rv~~y~~~~~~~~~-~~~-~~~il~~Lp~~Lr~~i~~~~~~~~l~~i~~F~~--~s~~~ 367 (532)
.+ ..+.|..|++-...+++ .++ |--++...||.|..| .+++..+.++.+|++ +++..
T Consensus 364 ghityesvshflkdflhedrddvdvevvflhr~~pdlele---glfkrhft~veffqgtvmnp~d 425 (1103)
T KOG1420|consen 364 GHITYESVSHFLKDFLHEDRDDVDVEVVFLHRISPDLELE---GLFKRHFTQVEFFQGTVMNPHD 425 (1103)
T ss_pred cceeHHHHHHHHHHHhhccccccceEEEEEecCCCCcchH---HHHhhheeeEEEecccccChhh
Confidence 11 12345555554444333 344 345678899998755 567888899999986 44443
No 30
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=98.21 E-value=8.1e-08 Score=94.30 Aligned_cols=52 Identities=12% Similarity=0.261 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhhccCCCCCcCCChhhHHHHHHHHHHHHHHHHH----HHhhhhhH
Q 009549 232 FLHCLRWGLQNLSAFGQNLEASTDILDNIFAICMTNFGVVLFVF----LIGKMQSD 283 (532)
Q Consensus 232 Yi~slYwa~~TmtTvGyGdi~p~t~~E~i~~i~~mi~G~~~~a~----iig~i~~i 283 (532)
--.++++.++||||.||||.+|.|...++|..+..+-|+++.|. |+++++-|
T Consensus 357 IPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSRI 412 (632)
T KOG4390|consen 357 IPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRI 412 (632)
T ss_pred CcHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccccEEEechhHH
Confidence 34678999999999999999999999999999999999998876 45555555
No 31
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.99 E-value=1.3e-05 Score=86.78 Aligned_cols=103 Identities=23% Similarity=0.250 Sum_probs=87.2
Q ss_pred HHHHHHHhccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeec-CCCCCcceeecCCCCeechhhhhhhhh
Q 009549 366 KELVDLSDCLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATS-SDGHNGKKDYLRYGDFCGEELIAWAQQ 444 (532)
Q Consensus 366 ~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~-~~~~~~~~~~l~~G~~FGe~~l~~~~~ 444 (532)
.++..+=..+.-....||+.++++||.++++|+|..|.+.. +.. .+|++..+..++.|+.+|+...
T Consensus 499 p~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRs--------v~~~~~~k~~i~~EygrGd~iG~~E~----- 565 (1158)
T KOG2968|consen 499 PFLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRS--------VIRQSGGKKEIVGEYGRGDLIGEVEM----- 565 (1158)
T ss_pred HHHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehh--------hhhccCccchhhhhccCcceeehhHH-----
Confidence 34555555677788999999999999999999999999998 333 3344447899999999999998
Q ss_pred hcCCCCCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHchHHH
Q 009549 445 KVDNPSSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 445 ~l~~~~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
+..++ |..|+.|..++|+.+||..-|..+...||.+-
T Consensus 566 -lt~~~------R~tTv~AvRdSelariPe~l~~~ik~ryP~v~ 602 (1158)
T KOG2968|consen 566 -LTKQP------RATTVMAVRDSELARIPEGLLNFIKLRYPQVV 602 (1158)
T ss_pred -hhcCC------ccceEEEEeehhhhhccHHHHHHHHHhccHHH
Confidence 55554 78899999999999999999999999999886
No 32
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.94 E-value=4.9e-05 Score=76.84 Aligned_cols=53 Identities=11% Similarity=0.212 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHhhccCCCC--CcCCChhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 009549 230 QKFLHCLRWGLQNLSAFGQNL--EASTDILDNIFAICMTNFGVVLFVFLIGKMQS 282 (532)
Q Consensus 230 ~~Yi~slYwa~~TmtTvGyGd--i~p~t~~E~i~~i~~mi~G~~~~a~iig~i~~ 282 (532)
..+..+|+||+.|+||+|||. ++|....-.++.++-+++|.++.|+++|-+-+
T Consensus 83 ~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfa 137 (336)
T PF01007_consen 83 NSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFA 137 (336)
T ss_dssp TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999998 56777777788888999999999999988754
No 33
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=97.76 E-value=0.00039 Score=70.73 Aligned_cols=91 Identities=11% Similarity=0.074 Sum_probs=67.6
Q ss_pred hhHHHHHHHHHHHHHhhccCCCCCcCCChhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCCCCCCC
Q 009549 228 FPQKFLHCLRWGLQNLSAFGQNLEASTDILDNIFAICMTNFGVVLFVFLIGKMQSDTERSRSREQKLKEIKQGPSFGRLS 307 (532)
Q Consensus 228 ~~~~Yi~slYwa~~TmtTvGyGdi~p~t~~E~i~~i~~mi~G~~~~a~iig~i~~i~~~~~~~~~~~~~i~~~m~~~~lp 307 (532)
...-|+.|++....|.-++||||++|.|...+..+++.-++|+++.|.+++.++-- -|..+--+.+++||-+.++-
T Consensus 284 ~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisRK----LeLt~aEKhVhNFMmDtqLT 359 (489)
T KOG3684|consen 284 VTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIARK----LELTKAEKHVHNFMMDTQLT 359 (489)
T ss_pred hHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 34568999999999999999999999999999999999999999999998887642 22322333556666555555
Q ss_pred HHHHHHHHHHHHHHh
Q 009549 308 SRLQQKIKNYKQQNW 322 (532)
Q Consensus 308 ~~L~~rv~~y~~~~~ 322 (532)
+++++-..+=++..|
T Consensus 360 k~~KnAAA~VLqeTW 374 (489)
T KOG3684|consen 360 KEHKNAAANVLQETW 374 (489)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555554444444444
No 34
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.57 E-value=0.00055 Score=74.71 Aligned_cols=105 Identities=16% Similarity=0.178 Sum_probs=81.7
Q ss_pred HHHhccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecC-CCCCcceeecCCCCeech-hhhhhhhhhcC
Q 009549 370 DLSDCLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSS-DGHNGKKDYLRYGDFCGE-ELIAWAQQKVD 447 (532)
Q Consensus 370 ~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~-~~~~~~~~~l~~G~~FGe-~~l~~~~~~l~ 447 (532)
+++.+++...+..|++|++.|+..+.+|.+.+|.++++ ..+ +|+...+....+|+.|-- .+++-. +.
T Consensus 110 ~L~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~--------~~~~~g~~~llk~V~~G~~~tSllSiLd~---l~ 178 (1158)
T KOG2968|consen 110 ELDRHIETLSLDAGDYIFKPGESDDSIYVVISGELTVH--------IRNGDGKEYLLKTVPPGGSFTSLLSILDS---LP 178 (1158)
T ss_pred eechhhhhhcccCCceeccCCCCCceEEEEeccceEEE--------ecCCCCceeeEeeccCCCchHhHHHHHHh---cc
Confidence 35588889999999999999999999999999999994 333 344437888999966653 333111 22
Q ss_pred CCCCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHchHHH
Q 009549 448 NPSSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 448 ~~~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
..+ ...++..++|.++|.+..++.+.|.+...+||+-.
T Consensus 179 ~~p---s~~~~i~akA~t~~tv~~~p~~sF~~~~~k~P~s~ 216 (1158)
T KOG2968|consen 179 GFP---SLSRTIAAKAATDCTVARIPYTSFRESFHKNPESS 216 (1158)
T ss_pred CCC---cccceeeeeeecCceEEEeccchhhhhhccChHHH
Confidence 222 13478899999999999999999999999999876
No 35
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=97.46 E-value=0.00016 Score=76.15 Aligned_cols=53 Identities=15% Similarity=0.295 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHhhccCCCCCcCCChhhHHHHHHHHHHHHHHHHHHHhhhhhH
Q 009549 231 KFLHCLRWGLQNLSAFGQNLEASTDILDNIFAICMTNFGVVLFVFLIGKMQSD 283 (532)
Q Consensus 231 ~Yi~slYwa~~TmtTvGyGdi~p~t~~E~i~~i~~mi~G~~~~a~iig~i~~i 283 (532)
-+..|+|++++++||+|||+++|.|...++++|+..++|.-++..+++.++..
T Consensus 115 ~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~ 167 (433)
T KOG1418|consen 115 SFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKF 167 (433)
T ss_pred ecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999988
No 36
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=97.16 E-value=0.013 Score=54.79 Aligned_cols=100 Identities=12% Similarity=0.060 Sum_probs=75.6
Q ss_pred HHHHHHHhccceeEecCCceE-eecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeechhhhhhhhh
Q 009549 366 KELVDLSDCLNPVFFTDRTRI-FREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCGEELIAWAQQ 444 (532)
Q Consensus 366 ~~l~~l~~~l~~~~~~~ge~I-~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~l~~~~~ 444 (532)
...+.+...-++..+.+|..+ ..........+++.+|.|.+ ... ++ - .+....+...||-...
T Consensus 13 ~L~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsi--------rr~-d~-l-l~~t~~aP~IlGl~~~----- 76 (207)
T PRK11832 13 KLDKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISL--------RRE-EN-V-LIGITQAPYIMGLADG----- 76 (207)
T ss_pred HHHHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEE--------Eec-CC-e-EEEeccCCeEeecccc-----
Confidence 345667777788999999997 54444446799999999999 322 22 1 6778899999995554
Q ss_pred hcCCCCCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHchHHH
Q 009549 445 KVDNPSSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 445 ~l~~~~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
+.+.. .....+|.++|+++.+++++|.++++++.=|+
T Consensus 77 -~~~~~------~~~~l~ae~~c~~~~i~~~~~~~iie~~~LW~ 113 (207)
T PRK11832 77 -LMKND------IPYKLISEGNCTGYHLPAKQTITLIEQNQLWR 113 (207)
T ss_pred -cCCCC------ceEEEEEcCccEEEEeeHHHHHHHHHHhchHH
Confidence 33331 34689999999999999999999999987665
No 37
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=96.77 E-value=0.0087 Score=58.58 Aligned_cols=51 Identities=10% Similarity=0.191 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhhccCCCCCcCCC-------hhhH-HHHHHHHHHHHHHHHHHHhhhh
Q 009549 231 KFLHCLRWGLQNLSAFGQNLEASTD-------ILDN-IFAICMTNFGVVLFVFLIGKMQ 281 (532)
Q Consensus 231 ~Yi~slYwa~~TmtTvGyGdi~p~t-------~~E~-i~~i~~mi~G~~~~a~iig~i~ 281 (532)
.|..|+|+.+.|+||+|+||.++.. ..++ .++.+.+++|..+++-.++-+.
T Consensus 186 syfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~Nllv 244 (350)
T KOG4404|consen 186 SYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLV 244 (350)
T ss_pred chhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHH
Confidence 3788999999999999999998842 3344 5566667778877776665543
No 38
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=96.21 E-value=0.011 Score=59.28 Aligned_cols=53 Identities=13% Similarity=0.305 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhhccCCCCCcCC--ChhhHHHHHHHHHHHHHHHHHHHhhhhhH
Q 009549 231 KFLHCLRWGLQNLSAFGQNLEAST--DILDNIFAICMTNFGVVLFVFLIGKMQSD 283 (532)
Q Consensus 231 ~Yi~slYwa~~TmtTvGyGdi~p~--t~~E~i~~i~~mi~G~~~~a~iig~i~~i 283 (532)
....||-||+-|=||+|||-=.++ -+.-++..++-+++|+++-|+++|.+-+-
T Consensus 112 sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aK 166 (400)
T KOG3827|consen 112 SFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAK 166 (400)
T ss_pred chhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999975543 45556667777889999999999998654
No 39
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=96.09 E-value=0.14 Score=45.08 Aligned_cols=108 Identities=13% Similarity=0.127 Sum_probs=77.6
Q ss_pred cCCHHHHHHHHhc-cceeEecCCceEeecCCC-CCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeechhhh
Q 009549 362 RWGEKELVDLSDC-LNPVFFTDRTRIFREGDP-IDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCGEELI 439 (532)
Q Consensus 362 ~~s~~~l~~l~~~-l~~~~~~~ge~I~~~Gd~-~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~l 439 (532)
+.+....++++.. .+.....+|+.-.-||.. .|.+-++++|.+.+..+ |+ .+-.+.+-++..--..
T Consensus 14 ~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~~----------g~--fLH~I~p~qFlDSPEW 81 (153)
T PF04831_consen 14 KVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSCD----------GR--FLHYIYPYQFLDSPEW 81 (153)
T ss_pred CCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEEC----------CE--eeEeecccccccChhh
Confidence 4677777788877 666888999999888854 58999999999999322 22 3444444444443332
Q ss_pred hhhhhhcCCCCCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHchHHH
Q 009549 440 AWAQQKVDNPSSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 440 ~~~~~~l~~~~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
.. ..+. ....-..|+.|.++|..+.=+|+.+..++.+.|.++
T Consensus 82 ~s----~~~s---~~~~FQVTitA~~~Cryl~W~R~kL~~~l~~~~~L~ 123 (153)
T PF04831_consen 82 ES----LRPS---EDDKFQVTITAEEDCRYLCWPREKLYLLLAKDPFLA 123 (153)
T ss_pred hc----cccC---CCCeEEEEEEEcCCcEEEEEEHHHHHHHHhhCHHHH
Confidence 00 1111 112357899999999999999999999999999887
No 40
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=95.79 E-value=0.0014 Score=63.98 Aligned_cols=52 Identities=12% Similarity=0.231 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhhccCCCCCcCCChhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 009549 231 KFLHCLRWGLQNLSAFGQNLEASTDILDNIFAICMTNFGVVLFVFLIGKMQS 282 (532)
Q Consensus 231 ~Yi~slYwa~~TmtTvGyGdi~p~t~~E~i~~i~~mi~G~~~~a~iig~i~~ 282 (532)
+..-|||||.+.+||+|||-.+|.|+..++|+|+--++|+-+--..+..++.
T Consensus 80 kF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~gE 131 (350)
T KOG4404|consen 80 KFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIGE 131 (350)
T ss_pred ccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHHH
Confidence 4567999999999999999999999999999999999998666555555543
No 41
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=94.52 E-value=0.13 Score=55.07 Aligned_cols=110 Identities=13% Similarity=0.184 Sum_probs=82.6
Q ss_pred HHHhhcCcccccCCHHHHHHHHhccceeEe-cCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecC
Q 009549 351 TELLRNVKEFERWGEKELVDLSDCLNPVFF-TDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLR 429 (532)
Q Consensus 351 ~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~-~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~ 429 (532)
.++..+.|-|.+++-...++|+..|-.... ..|.+|...|+.-+..+.|++|.|++ +.+++. ...+.
T Consensus 280 LeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv--------~~PdGk----~e~l~ 347 (1283)
T KOG3542|consen 280 LEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEV--------VKPDGK----REELK 347 (1283)
T ss_pred HHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEE--------ecCCCc----eEEee
Confidence 567788899999999999999998876554 67899999999999999999999999 544443 45688
Q ss_pred CCCeechhhhhhhhhhcCCCCCCCCCCccceEE-EcceEEEEEeCHHHHHHHHHHc
Q 009549 430 YGDFCGEELIAWAQQKVDNPSSSNLPISTTTIQ-ALTEVEGFYLLASDLKNAFIEH 484 (532)
Q Consensus 430 ~G~~FGe~~l~~~~~~l~~~~~~~~~~r~~tv~-a~t~~~l~~L~~~~f~~ll~~~ 484 (532)
-|+.||...- .+.+. -....+ -..+|+..++...|+-.++..-
T Consensus 348 mGnSFG~~PT------~dkqy------m~G~mRTkVDDCqFVciaqqDycrIln~v 391 (1283)
T KOG3542|consen 348 MGNSFGAEPT------PDKQY------MIGEMRTKVDDCQFVCIAQQDYCRILNTV 391 (1283)
T ss_pred cccccCCCCC------cchhh------hhhhhheecccceEEEeehhhHHHHHHHH
Confidence 8999995443 11110 011222 3467999999999999888653
No 42
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=94.35 E-value=0.0058 Score=64.24 Aligned_cols=48 Identities=15% Similarity=0.275 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHhhccCCCCCcCCChhhH--------HHHHHHHHHHHHHHHHHH
Q 009549 230 QKFLHCLRWGLQNLSAFGQNLEASTDILDN--------IFAICMTNFGVVLFVFLI 277 (532)
Q Consensus 230 ~~Yi~slYwa~~TmtTvGyGdi~p~t~~E~--------i~~i~~mi~G~~~~a~ii 277 (532)
--|+.|+|++++++||||+||++|.+...+ ....+..++|....+.+.
T Consensus 241 w~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 241 WSFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred eeeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence 358899999999999999999999987755 677888888888887776
No 43
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=91.90 E-value=0.23 Score=53.15 Aligned_cols=90 Identities=18% Similarity=0.155 Sum_probs=71.1
Q ss_pred HHhhcCcccccCCHHHHHHHHhccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCC
Q 009549 352 ELLRNVKEFERWGEKELVDLSDCLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYG 431 (532)
Q Consensus 352 ~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G 431 (532)
..+.+...|+++-..-++.++...+-+.++.+.++++.||.+...|++++|.|-+ .-..+-+-
T Consensus 37 ~~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v-----------------~gqi~mp~ 99 (1283)
T KOG3542|consen 37 EQLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFV-----------------EGQIYMPY 99 (1283)
T ss_pred HHHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEe-----------------ecceecCc
Confidence 3567788888888889999999999999999999999999999999999999998 12235555
Q ss_pred CeechhhhhhhhhhcCCCCCCCCCCccceEEEcceEEEEEeC
Q 009549 432 DFCGEELIAWAQQKVDNPSSSNLPISTTTIQALTEVEGFYLL 473 (532)
Q Consensus 432 ~~FGe~~l~~~~~~l~~~~~~~~~~r~~tv~a~t~~~l~~L~ 473 (532)
.+||.-. +. .|++++--+..+|+.+++
T Consensus 100 ~~fgkr~---------g~------~r~~nclllq~semivid 126 (1283)
T KOG3542|consen 100 GCFGKRT---------GQ------NRTHNCLLLQESEMIVID 126 (1283)
T ss_pred ccccccc---------cc------ccccceeeecccceeeee
Confidence 6777211 11 278888888888888773
No 44
>COG4709 Predicted membrane protein [Function unknown]
Probab=83.92 E-value=3.2 Score=37.88 Aligned_cols=74 Identities=12% Similarity=0.142 Sum_probs=55.4
Q ss_pred HHHHHhhcCCCCCCCCHHHHHHHHHHHHHHhhh--cCCCCHHHHHHhC--ChhHHHHHHHHHhHHHhhcCcccccCCHHH
Q 009549 292 QKLKEIKQGPSFGRLSSRLQQKIKNYKQQNWID--DKHADVVNLVNNL--PQGLRSQVKGELGTELLRNVKEFERWGEKE 367 (532)
Q Consensus 292 ~~~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~--~~~~~~~~il~~L--p~~Lr~~i~~~~~~~~l~~i~~F~~~s~~~ 367 (532)
+-++++++|+ .++|++.++.+..+|+-++.+ ..|.+|+|+..+| |.++-+|+..+.-.+..+.-|-+++.+...
T Consensus 5 efL~eL~~yL--~~Lp~~~r~e~m~dyeehF~~a~~~GksE~EI~~~LG~P~eiA~ei~s~~~~k~~~~~~~~~n~~~ai 82 (195)
T COG4709 5 EFLNELEQYL--EGLPREERREIMYDYEEHFREAQEAGKSEEEIAKDLGDPKEIAAEILSERGIKKEEVKPTQKNVRRAI 82 (195)
T ss_pred HHHHHHHHHH--HhCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHhCCHHHHHHHHHHHccchHHhccCcccchHHHH
Confidence 4567888888 689999999999998877764 3567899999998 667777777766666666666666655543
No 45
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=82.90 E-value=0.2 Score=52.38 Aligned_cols=33 Identities=6% Similarity=0.068 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhhccCCCCCcCCChhhHHHHHHH
Q 009549 233 LHCLRWGLQNLSAFGQNLEASTDILDNIFAICM 265 (532)
Q Consensus 233 i~slYwa~~TmtTvGyGdi~p~t~~E~i~~i~~ 265 (532)
..|+|+.++|.+||||||-.|.-....++.+++
T Consensus 219 f~s~y~v~vtfstvgygd~~pd~w~sql~~vi~ 251 (1087)
T KOG3193|consen 219 FTSFYFVMVTFSTVGYGDWYPDYWASQLCVVIL 251 (1087)
T ss_pred eeeEEEEEEEEeeccccccccccchhhHHHHHH
Confidence 467899999999999999999744444443333
No 46
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=76.86 E-value=8.1 Score=35.56 Aligned_cols=57 Identities=16% Similarity=0.344 Sum_probs=44.2
Q ss_pred HHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHhhh--cCCCCHHHHHHhC--ChhHHHHHHHHH
Q 009549 291 EQKLKEIKQGPSFGRLSSRLQQKIKNYKQQNWID--DKHADVVNLVNNL--PQGLRSQVKGEL 349 (532)
Q Consensus 291 ~~~~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~--~~~~~~~~il~~L--p~~Lr~~i~~~~ 349 (532)
++-+++++++++ ++|++-++++.+||+-+..+ ..|.+|+++.++| |.++-+++..+.
T Consensus 4 ~efL~~L~~~L~--~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~~ 64 (181)
T PF08006_consen 4 NEFLNELEKYLK--KLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAEY 64 (181)
T ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence 345667888886 59999999999999987775 4567899999998 566666666543
No 47
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=75.07 E-value=6.2 Score=33.04 Aligned_cols=44 Identities=16% Similarity=0.299 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHHHHHhhh----------cCCCCHHHHHHhCChhHHHHHHHH
Q 009549 305 RLSSRLQQKIKNYKQQNWID----------DKHADVVNLVNNLPQGLRSQVKGE 348 (532)
Q Consensus 305 ~lp~~L~~rv~~y~~~~~~~----------~~~~~~~~il~~Lp~~Lr~~i~~~ 348 (532)
-+|.+++..|...+...-.. ....+...++..||++||.+|+..
T Consensus 52 ALP~diR~EVl~qe~~~~~~~~~~~~~~~~~~~~d~asflatl~p~LR~evL~~ 105 (108)
T PF14377_consen 52 ALPPDIREEVLAQERRERRRQERQQNARQHPQEMDNASFLATLPPELRREVLLD 105 (108)
T ss_pred hCCHHHHHHHHHHHHHHHHHhhhccccccCCCCCCHHHHHHhCCHHHHHHHhhc
Confidence 47999999999998865432 122456889999999999999865
No 48
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=64.86 E-value=11 Score=28.03 Aligned_cols=44 Identities=23% Similarity=0.230 Sum_probs=31.6
Q ss_pred eEecCCceEeecCCCCC-eEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCee
Q 009549 378 VFFTDRTRIFREGDPID-EMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFC 434 (532)
Q Consensus 378 ~~~~~ge~I~~~Gd~~~-~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~F 434 (532)
..+.||+..-..-.... ++++|++|++.+. .++ ....+++|+.+
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~---------~~~----~~~~l~~Gd~~ 47 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLT---------VDG----ERVELKPGDAI 47 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEE---------ETT----EEEEEETTEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEE---------Ecc----EEeEccCCEEE
Confidence 46788887765555555 9999999999993 222 35668888765
No 49
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=61.14 E-value=27 Score=31.41 Aligned_cols=69 Identities=17% Similarity=0.314 Sum_probs=42.2
Q ss_pred cCCceE-eecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeechhhhhhhhhhcCCCCCCCCCCccc
Q 009549 381 TDRTRI-FREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCGEELIAWAQQKVDNPSSSNLPISTT 459 (532)
Q Consensus 381 ~~ge~I-~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~l~~~~~~l~~~~~~~~~~r~~ 459 (532)
.||+.- +... ..++++++++|.+.+ -..++|+. ....+++|++|= +.+. -+.
T Consensus 36 Gpn~R~d~H~~-~tdE~FyqleG~~~l--------~v~d~g~~-~~v~L~eGd~fl----------vP~g-------vpH 88 (159)
T TIGR03037 36 GPNARTDFHDD-PGEEFFYQLKGEMYL--------KVTEEGKR-EDVPIREGDIFL----------LPPH-------VPH 88 (159)
T ss_pred CCCCCcccccC-CCceEEEEEcceEEE--------EEEcCCcE-EEEEECCCCEEE----------eCCC-------CCc
Confidence 444444 4443 368999999999999 32343332 357789998874 3332 233
Q ss_pred eEEEcceEEEEEeCHHH
Q 009549 460 TIQALTEVEGFYLLASD 476 (532)
Q Consensus 460 tv~a~t~~~l~~L~~~~ 476 (532)
+.++...|..+.+.+..
T Consensus 89 sP~r~~~t~~LvIE~~r 105 (159)
T TIGR03037 89 SPQRPAGSIGLVIERKR 105 (159)
T ss_pred ccccCCCcEEEEEEeCC
Confidence 45555667777766654
No 50
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=58.94 E-value=57 Score=28.02 Aligned_cols=70 Identities=14% Similarity=0.134 Sum_probs=43.0
Q ss_pred cceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeechhhhhhhhhhcCCCCCCCC
Q 009549 375 LNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCGEELIAWAQQKVDNPSSSNL 454 (532)
Q Consensus 375 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~l~~~~~~l~~~~~~~~ 454 (532)
+....+.||..+-..-....++++|++|++.+. ..+++ ....+++|+.+- +.+.
T Consensus 37 ~~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~--------~i~~g---~~~~L~aGD~i~----------~~~~----- 90 (125)
T PRK13290 37 FHETTIYAGTETHLHYKNHLEAVYCIEGEGEVE--------DLATG---EVHPIRPGTMYA----------LDKH----- 90 (125)
T ss_pred EEEEEECCCCcccceeCCCEEEEEEEeCEEEEE--------EcCCC---EEEEeCCCeEEE----------ECCC-----
Confidence 344577888766332222247999999999982 11122 356799999876 3333
Q ss_pred CCccceEEEcceEEEEEe
Q 009549 455 PISTTTIQALTEVEGFYL 472 (532)
Q Consensus 455 ~~r~~tv~a~t~~~l~~L 472 (532)
.+..+++.++++++.+
T Consensus 91 --~~H~~~N~e~~~~l~v 106 (125)
T PRK13290 91 --DRHYLRAGEDMRLVCV 106 (125)
T ss_pred --CcEEEEcCCCEEEEEE
Confidence 2445555577777664
No 51
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=48.84 E-value=45 Score=27.83 Aligned_cols=48 Identities=15% Similarity=0.221 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHHHHHHhhhc---------C-C---CCHHHHHHhCChhHHHHHHHHHhHH
Q 009549 305 RLSSRLQQKIKNYKQQNWIDD---------K-H---ADVVNLVNNLPQGLRSQVKGELGTE 352 (532)
Q Consensus 305 ~lp~~L~~rv~~y~~~~~~~~---------~-~---~~~~~il~~Lp~~Lr~~i~~~~~~~ 352 (532)
-+|.+++.+|..-+...-... . . --..++|+.||+.||.+|..+....
T Consensus 8 aLPeDiR~Evl~~~~~~~~~~~~~~~~~~~~~~~~~~I~pefL~ALP~diR~EVl~qe~~~ 68 (108)
T PF14377_consen 8 ALPEDIREEVLAQQQRERRAQASQRQSPQSSAPQPSQIDPEFLAALPPDIREEVLAQERRE 68 (108)
T ss_pred HCCHHHHHHHHHHHHhhccchhcccCcccccCCCccccCHHHHHhCCHHHHHHHHHHHHHH
Confidence 479999999865444321100 0 0 0136899999999999998776544
No 52
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=46.81 E-value=7.5 Score=33.95 Aligned_cols=55 Identities=9% Similarity=0.064 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHHHHhhccCCCCCcCCChhhHHHHHHHHHHHHHHHHHHHhhhhhH
Q 009549 228 FPQKFLHCLRWGLQNLSAFGQNLEASTDILDNIFAICMTNFGVVLFVFLIGKMQSD 283 (532)
Q Consensus 228 ~~~~Yi~slYwa~~TmtTvGyGdi~p~t~~E~i~~i~~mi~G~~~~a~iig~i~~i 283 (532)
.......++++.+.+++. +-++..|.+...+++.+++.+++.++.+.--|++++.
T Consensus 41 ~~~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~ 95 (148)
T PF00060_consen 41 WRFSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSF 95 (148)
T ss_dssp HHHHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667788888877776 5567899999999999999999999999999999887
No 53
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=46.16 E-value=51 Score=30.17 Aligned_cols=60 Identities=20% Similarity=0.322 Sum_probs=37.9
Q ss_pred CCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeechhhhhhhhhhcCCCCCCCCCCccceEEEcceEEEE
Q 009549 391 DPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCGEELIAWAQQKVDNPSSSNLPISTTTIQALTEVEGF 470 (532)
Q Consensus 391 d~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~l~~~~~~l~~~~~~~~~~r~~tv~a~t~~~l~ 470 (532)
+..++++++++|.+.+ -..++|+. ....+++|++|= +.+. -+.+-++...|..+
T Consensus 52 ~~tdE~FyqleG~~~l--------~v~d~g~~-~~v~L~eGd~fl----------lP~g-------vpHsP~r~~~tv~L 105 (177)
T PRK13264 52 DPGEEFFYQLEGDMYL--------KVQEDGKR-RDVPIREGEMFL----------LPPH-------VPHSPQREAGSIGL 105 (177)
T ss_pred CCCceEEEEECCeEEE--------EEEcCCce-eeEEECCCCEEE----------eCCC-------CCcCCccCCCeEEE
Confidence 5678999999999988 22344432 356789998874 3322 13334445667777
Q ss_pred EeCHHH
Q 009549 471 YLLASD 476 (532)
Q Consensus 471 ~L~~~~ 476 (532)
.+.+..
T Consensus 106 viE~~r 111 (177)
T PRK13264 106 VIERKR 111 (177)
T ss_pred EEEeCC
Confidence 775544
No 54
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=45.25 E-value=35 Score=26.20 Aligned_cols=30 Identities=33% Similarity=0.491 Sum_probs=23.0
Q ss_pred CeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeec
Q 009549 394 DEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCG 435 (532)
Q Consensus 394 ~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FG 435 (532)
++..+|++|+|.+. .++| ....+++||.|=
T Consensus 26 ~E~~~vleG~v~it---------~~~G---~~~~~~aGD~~~ 55 (74)
T PF05899_consen 26 DEFFYVLEGEVTIT---------DEDG---ETVTFKAGDAFF 55 (74)
T ss_dssp EEEEEEEEEEEEEE---------ETTT---EEEEEETTEEEE
T ss_pred CEEEEEEEeEEEEE---------ECCC---CEEEEcCCcEEE
Confidence 78889999999992 2233 457899999875
No 55
>COG5559 Uncharacterized conserved small protein [Function unknown]
Probab=41.14 E-value=29 Score=25.24 Aligned_cols=19 Identities=26% Similarity=0.487 Sum_probs=16.5
Q ss_pred HHHHHhCChhHHHHHHHHH
Q 009549 331 VNLVNNLPQGLRSQVKGEL 349 (532)
Q Consensus 331 ~~il~~Lp~~Lr~~i~~~~ 349 (532)
-++++.||..|+.++..++
T Consensus 5 yelfqkLPDdLKrEvldY~ 23 (65)
T COG5559 5 YELFQKLPDDLKREVLDYI 23 (65)
T ss_pred HHHHHHCcHHHHHHHHHHH
Confidence 4689999999999998765
No 56
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=41.05 E-value=86 Score=24.94 Aligned_cols=64 Identities=20% Similarity=0.192 Sum_probs=43.2
Q ss_pred ccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeechhhhhhhhhhcCCCCCCC
Q 009549 374 CLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCGEELIAWAQQKVDNPSSSN 453 (532)
Q Consensus 374 ~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~l~~~~~~l~~~~~~~ 453 (532)
......+.||..+-.....+.+-.||++|.... ++ ..+.+|++.= ..+.
T Consensus 25 ~~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~d-----------~~------~~~~~G~~~~----------~p~g---- 73 (91)
T PF12973_consen 25 RVSLLRLEPGASLPRHRHPGGEEILVLEGELSD-----------GD------GRYGAGDWLR----------LPPG---- 73 (91)
T ss_dssp EEEEEEE-TTEEEEEEEESS-EEEEEEECEEEE-----------TT------CEEETTEEEE----------E-TT----
T ss_pred EEEEEEECCCCCcCccCCCCcEEEEEEEEEEEE-----------CC------ccCCCCeEEE----------eCCC----
Confidence 345567889988877667777888999999887 11 2367888753 2332
Q ss_pred CCCccceEEEcceEEEEE
Q 009549 454 LPISTTTIQALTEVEGFY 471 (532)
Q Consensus 454 ~~~r~~tv~a~t~~~l~~ 471 (532)
+..+..+.+.|.++.
T Consensus 74 ---~~h~~~s~~gc~~~v 88 (91)
T PF12973_consen 74 ---SSHTPRSDEGCLILV 88 (91)
T ss_dssp ---EEEEEEESSCEEEEE
T ss_pred ---CccccCcCCCEEEEE
Confidence 466778888888875
No 57
>PLN03223 Polycystin cation channel protein; Provisional
Probab=40.73 E-value=7.7e+02 Score=30.22 Aligned_cols=11 Identities=9% Similarity=0.184 Sum_probs=7.2
Q ss_pred hh-hhhHHHHHh
Q 009549 73 LW-IFFLIDILA 83 (532)
Q Consensus 73 lk-~~F~~Dlis 83 (532)
+| .|=|+|++.
T Consensus 1211 FKSfWNwLEIl~ 1222 (1634)
T PLN03223 1211 FLSGWNYVDFAS 1222 (1634)
T ss_pred hccchHHHHHHH
Confidence 44 477888854
No 58
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=39.22 E-value=3.4e+02 Score=30.77 Aligned_cols=70 Identities=14% Similarity=0.141 Sum_probs=44.1
Q ss_pred hccCCCCCcCCChh------hHHHHHHHHHHHHHHHHHHHhhhhhH----HHHH-HHHHHHHHHhhcCCCCCCCCHHHHH
Q 009549 244 SAFGQNLEASTDIL------DNIFAICMTNFGVVLFVFLIGKMQSD----TERS-RSREQKLKEIKQGPSFGRLSSRLQQ 312 (532)
Q Consensus 244 tTvGyGdi~p~t~~------E~i~~i~~mi~G~~~~a~iig~i~~i----~~~~-~~~~~~~~~i~~~m~~~~lp~~L~~ 312 (532)
.|+|+||....... -.+|.+++.++.++++-.+|+.|++. .+.+ .+.+.+-..+- .|-++.+|+.++.
T Consensus 601 ftig~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s~~~Wk~Q~A~~i-L~lErs~p~~~r~ 679 (782)
T KOG3676|consen 601 FTIGMGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQESEKEWKLQWAATI-LMLERSLPPALRK 679 (782)
T ss_pred HhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHHHH-HHHHhcCCHHHHH
Confidence 68999999775433 34666677777777788888888776 2222 33333332222 3446788888887
Q ss_pred HH
Q 009549 313 KI 314 (532)
Q Consensus 313 rv 314 (532)
+-
T Consensus 680 ~~ 681 (782)
T KOG3676|consen 680 RF 681 (782)
T ss_pred HH
Confidence 63
No 59
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=36.10 E-value=85 Score=22.90 Aligned_cols=39 Identities=21% Similarity=0.178 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHhhhhhH----HHHHHHHHHHHHHhhcCCC
Q 009549 264 CMTNFGVVLFVFLIGKMQSD----TERSRSREQKLKEIKQGPS 302 (532)
Q Consensus 264 ~~mi~G~~~~a~iig~i~~i----~~~~~~~~~~~~~i~~~m~ 302 (532)
.+.+++.+.|+.+|-.+-.- .+...+.++|+|.+-+.+.
T Consensus 14 ~l~vl~~~~Ftl~IRri~~~s~~kkq~~~~~eqKLDrIIeLLE 56 (58)
T PF13314_consen 14 ILIVLFGASFTLFIRRILINSNAKKQDVDSMEQKLDRIIELLE 56 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHc
Confidence 44444555555555444332 1122357788888766543
No 60
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=34.32 E-value=38 Score=31.85 Aligned_cols=59 Identities=22% Similarity=0.307 Sum_probs=41.1
Q ss_pred HhCChhHHHHHHHHHhHHHhhcCcccc-cCCHHHHHHHHhccceeE--ecCCceEeecCCCCC
Q 009549 335 NNLPQGLRSQVKGELGTELLRNVKEFE-RWGEKELVDLSDCLNPVF--FTDRTRIFREGDPID 394 (532)
Q Consensus 335 ~~Lp~~Lr~~i~~~~~~~~l~~i~~F~-~~s~~~l~~l~~~l~~~~--~~~ge~I~~~Gd~~~ 394 (532)
..+|+. ..++...+...++.-.-.|. ..++...++.+....+.. +.+||.|+++|+..+
T Consensus 146 ~~~~~~-~~~~~~~l~~~~i~PNl~~d~~~T~~~~~~a~~~V~pv~~~V~~Ge~IV~kGe~VT 207 (222)
T PF07697_consen 146 SNLPSE-LRELLKELLSNFIRPNLIYDEEATEKAREEALASVSPVRGMVKKGEVIVRKGEIVT 207 (222)
T ss_pred cCCCHH-HHHHHHHHHHhcCCchhhcCHHHHHHHHHHHHhcCCchHhhccCCCEEecCCcEeC
Confidence 345666 44455555555554444443 456777888889999988 999999999999754
No 61
>PF14841 FliG_M: FliG middle domain; PDB: 3HJL_A 3AJC_A 1LKV_X 3SOH_D 3USY_B 3USW_A.
Probab=30.67 E-value=56 Score=25.47 Aligned_cols=40 Identities=18% Similarity=0.402 Sum_probs=29.1
Q ss_pred HHHHHhCChhHHHHHHHHHhHHHhhcCcccccCCHHHHHHHHhcccee
Q 009549 331 VNLVNNLPQGLRSQVKGELGTELLRNVKEFERWGEKELVDLSDCLNPV 378 (532)
Q Consensus 331 ~~il~~Lp~~Lr~~i~~~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~ 378 (532)
.++|..||+++|.+++..+ .-+...+++.++.+-..++..
T Consensus 30 A~VL~~lp~e~r~~v~~Ri--------a~~~~v~~~~i~~ie~~L~~~ 69 (79)
T PF14841_consen 30 AEVLSQLPEELRAEVVRRI--------ARLESVSPEVIEEIEEVLEEK 69 (79)
T ss_dssp HHHHHTS-HHHHHHHHHHH--------HTCCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHH--------HccCCCCHHHHHHHHHHHHHH
Confidence 6788999999888877554 456678888888887766543
No 62
>COG5559 Uncharacterized conserved small protein [Function unknown]
Probab=28.94 E-value=59 Score=23.69 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=19.3
Q ss_pred CCCCCHHHHHHHHHHHHHHhhh
Q 009549 303 FGRLSSRLQQKIKNYKQQNWID 324 (532)
Q Consensus 303 ~~~lp~~L~~rv~~y~~~~~~~ 324 (532)
..++|.+|++.|.+|.+|.-.+
T Consensus 8 fqkLPDdLKrEvldY~EfLlek 29 (65)
T COG5559 8 FQKLPDDLKREVLDYIEFLLEK 29 (65)
T ss_pred HHHCcHHHHHHHHHHHHHHHHH
Confidence 3579999999999999998874
No 63
>KOG2378 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=28.86 E-value=52 Score=34.44 Aligned_cols=44 Identities=16% Similarity=0.148 Sum_probs=33.2
Q ss_pred CCCeechhhhhhhhhhcCCCCCCCCCCccceEEEcc-eEEEEEeCHHHHHHHHHHch
Q 009549 430 YGDFCGEELIAWAQQKVDNPSSSNLPISTTTIQALT-EVEGFYLLASDLKNAFIEHR 485 (532)
Q Consensus 430 ~G~~FGe~~l~~~~~~l~~~~~~~~~~r~~tv~a~t-~~~l~~L~~~~f~~ll~~~P 485 (532)
+||-||..++ .... +|.+++...+ +|.+++.++.+|.+++++-.
T Consensus 1 eGddfgklal------vnd~------praativl~ed~~~fl~vDk~~Fn~I~~~vE 45 (573)
T KOG2378|consen 1 EGDDFGKLAL------VNDA------PRAATIVLREDNCHFLRVDKHDFNRILHDVE 45 (573)
T ss_pred CCcccchhcc------cccc------ccccceeeecCCCcceeecHHHHHHHHHhhh
Confidence 5899999887 3322 2566665554 59999999999999998653
No 64
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=27.72 E-value=1.3e+02 Score=26.22 Aligned_cols=54 Identities=19% Similarity=0.175 Sum_probs=34.7
Q ss_pred ccceeEecCCceEeecCCC-CCeEEEEEeeEEEEeecccceeeecCC-CCCcceeecCCCCeec
Q 009549 374 CLNPVFFTDRTRIFREGDP-IDEMVFVLEGKLWSHSARNVTIATSSD-GHNGKKDYLRYGDFCG 435 (532)
Q Consensus 374 ~l~~~~~~~ge~I~~~Gd~-~~~lyfI~~G~V~v~~~~~~~~~~~~~-~~~~~~~~l~~G~~FG 435 (532)
.+....+.||...-..-.. .+++++|++|+..+.. .+. +.......+++|+.+=
T Consensus 31 ~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~--------~~~~~~~~~~~~l~~GD~~~ 86 (146)
T smart00835 31 SAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGV--------VDPNGNKVYDARLREGDVFV 86 (146)
T ss_pred EEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEE--------EeCCCCeEEEEEecCCCEEE
Confidence 4456677888877544433 5789999999999832 111 1111456788888764
No 65
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=27.71 E-value=1.3e+02 Score=25.67 Aligned_cols=48 Identities=27% Similarity=0.307 Sum_probs=37.3
Q ss_pred cceeEecCCceEeecCCC-CCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeec
Q 009549 375 LNPVFFTDRTRIFREGDP-IDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCG 435 (532)
Q Consensus 375 l~~~~~~~ge~I~~~Gd~-~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FG 435 (532)
+....+.||..+-..-.+ .+...+|++|++.+.. + + ....+.+||++-
T Consensus 45 ~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~---------~-g---~~~~l~~Gd~i~ 93 (131)
T COG1917 45 VVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQL---------E-G---EKKELKAGDVII 93 (131)
T ss_pred EEEEEECCCcccccccCCCcceEEEEEecEEEEEe---------c-C---CceEecCCCEEE
Confidence 456778999999777776 7789999999999932 2 2 356789999986
No 66
>PHA01757 hypothetical protein
Probab=27.15 E-value=2e+02 Score=22.40 Aligned_cols=44 Identities=14% Similarity=0.283 Sum_probs=30.9
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHhhhhhH---HHHHHHHHHHHHHhh
Q 009549 255 DILDNIFAICMTNFGVVLFVFLIGKMQSD---TERSRSREQKLKEIK 298 (532)
Q Consensus 255 t~~E~i~~i~~mi~G~~~~a~iig~i~~i---~~~~~~~~~~~~~i~ 298 (532)
+..|...--+....|.+.-++++|.+..+ .++.+.|.+.++.++
T Consensus 4 ~l~e~al~gf~a~~g~l~~~fii~e~~hlynek~~nenf~~AvD~m~ 50 (98)
T PHA01757 4 TLLEGALYGFFAVTGALSASFIIGEIVHLYNEKQRNENFAKAIDQMS 50 (98)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHhHHHHHHHHH
Confidence 45677777788888999999999999888 334455555555443
No 67
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=25.83 E-value=1.5e+02 Score=25.29 Aligned_cols=35 Identities=20% Similarity=0.224 Sum_probs=26.5
Q ss_pred hccceeEecCCceE-eecCCCCCeEEEEEeeEEEEe
Q 009549 373 DCLNPVFFTDRTRI-FREGDPIDEMVFVLEGKLWSH 407 (532)
Q Consensus 373 ~~l~~~~~~~ge~I-~~~Gd~~~~lyfI~~G~V~v~ 407 (532)
...+...+.||+-+ .+.-...++.|+|++|...+.
T Consensus 36 ~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~ 71 (127)
T COG0662 36 YSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVT 71 (127)
T ss_pred EEEEEEEECCCcccCcccccCcceEEEEEeeEEEEE
Confidence 34567788888886 444444789999999999994
No 68
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=24.07 E-value=2e+02 Score=27.25 Aligned_cols=68 Identities=15% Similarity=0.195 Sum_probs=46.6
Q ss_pred ccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeechhhhhhhhhhcCCCCCCC
Q 009549 374 CLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCGEELIAWAQQKVDNPSSSN 453 (532)
Q Consensus 374 ~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~l~~~~~~l~~~~~~~ 453 (532)
......+.||..+-.....+.++.+|++|...- + -..+.+|++.= +.+.
T Consensus 128 ~v~Ll~i~pG~~~p~H~H~G~E~tlVLeG~f~d------------e-----~g~y~~Gd~i~----------~p~~---- 176 (215)
T TIGR02451 128 RVRLLYIEAGQSIPQHTHKGFELTLVLHGAFSD------------E-----TGVYGVGDFEE----------ADGS---- 176 (215)
T ss_pred EEEEEEECCCCccCCCcCCCcEEEEEEEEEEEc------------C-----CCccCCCeEEE----------CCCC----
Confidence 455677899999999888889999999999543 1 12478888754 3333
Q ss_pred CCCccceEEEcce--EEEEEeCHH
Q 009549 454 LPISTTTIQALTE--VEGFYLLAS 475 (532)
Q Consensus 454 ~~~r~~tv~a~t~--~~l~~L~~~ 475 (532)
...+.++.+. |-++.+.-.
T Consensus 177 ---~~H~p~a~~~~~Cicl~v~da 197 (215)
T TIGR02451 177 ---VQHQPRTVSGGDCLCLAVLDA 197 (215)
T ss_pred ---CCcCcccCCCCCeEEEEEecC
Confidence 2445666644 877776533
No 69
>PRK06771 hypothetical protein; Provisional
Probab=23.98 E-value=3.9e+02 Score=21.68 Aligned_cols=46 Identities=17% Similarity=0.294 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhH----HHHHHHHHHHHHHhhcCCCCCCC
Q 009549 258 DNIFAICMTNFGVVLFVFLIGKMQSD----TERSRSREQKLKEIKQGPSFGRL 306 (532)
Q Consensus 258 E~i~~i~~mi~G~~~~a~iig~i~~i----~~~~~~~~~~~~~i~~~m~~~~l 306 (532)
|.+..+.+.++|.+ |+...++.+ ..+....+.+++.+.+.+-.-..
T Consensus 2 E~~ili~~~~~~~i---~i~~~l~~~~~~~~~~~k~ie~~L~~I~~~~Gi~~~ 51 (93)
T PRK06771 2 EFWMIIPIAIFGFI---YIVEKLTKIEKKTDARLKRMEDRLQLITKEMGIVDR 51 (93)
T ss_pred chhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 34444444444433 333344444 34556667778877776654444
No 70
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=23.82 E-value=41 Score=21.72 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=15.9
Q ss_pred HHHhhcCCCCCCCC-----HHHHHHHHHHH
Q 009549 294 LKEIKQGPSFGRLS-----SRLQQKIKNYK 318 (532)
Q Consensus 294 ~~~i~~~m~~~~lp-----~~L~~rv~~y~ 318 (532)
..+++++++.+++| .+|..|+.+|+
T Consensus 6 v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 6 VAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp HHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 34555566666665 67888888774
No 71
>PF07077 DUF1345: Protein of unknown function (DUF1345); InterPro: IPR009781 This family consists of several hypothetical bacterial proteins of around 230 residues in length. The function of this family is unknown.
Probab=22.39 E-value=2.6e+02 Score=25.66 Aligned_cols=48 Identities=6% Similarity=0.044 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhhccCCCCCcCCChhhHHHHHHHHHHHHHHHHHHHh
Q 009549 231 KFLHCLRWGLQNLSAFGQNLEASTDILDNIFAICMTNFGVVLFVFLIG 278 (532)
Q Consensus 231 ~Yi~slYwa~~TmtTvGyGdi~p~t~~E~i~~i~~mi~G~~~~a~iig 278 (532)
.|..=+|+|++.-+|-.-.|+.+.|..=+-.+..=.+++.++.+.+++
T Consensus 132 ~y~DFlYfsftiG~t~q~SDv~v~s~~~Rr~vl~hsllSF~Fnt~ilA 179 (180)
T PF07077_consen 132 DYWDFLYFSFTIGMTFQTSDVNVTSRRMRRLVLLHSLLSFFFNTVILA 179 (180)
T ss_pred CchhhhHHHHHHHhhccccCCCcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 366678999999999999999999888888888887777777777664
No 72
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.09 E-value=2.7e+02 Score=23.92 Aligned_cols=12 Identities=17% Similarity=0.252 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHH
Q 009549 310 LQQKIKNYKQQN 321 (532)
Q Consensus 310 L~~rv~~y~~~~ 321 (532)
-+..|.+||...
T Consensus 44 yk~~V~~HF~~t 55 (128)
T PF06295_consen 44 YKQEVNDHFAQT 55 (128)
T ss_pred HHHHHHHHHHHH
Confidence 356677777643
No 73
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=21.56 E-value=3.7e+02 Score=21.89 Aligned_cols=63 Identities=13% Similarity=0.068 Sum_probs=37.6
Q ss_pred eEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeechhhhhhhhhhcCCCCCCCCCCc
Q 009549 378 VFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCGEELIAWAQQKVDNPSSSNLPIS 457 (532)
Q Consensus 378 ~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~l~~~~~~l~~~~~~~~~~r 457 (532)
-...|||+=+. ....+.-=|.+|.+++..+.. . ....+.+|+.|- .... +
T Consensus 28 GVm~pGeY~F~--T~~~E~M~vvsG~l~V~lpg~----------~-ew~~~~aGesF~----------Vpan-------s 77 (94)
T PF06865_consen 28 GVMLPGEYTFG--TSAPERMEVVSGELEVKLPGE----------D-EWQTYSAGESFE----------VPAN-------S 77 (94)
T ss_dssp EEE-SECEEEE--ESS-EEEEEEESEEEEEETT-----------S-S-EEEETT-EEE----------E-TT-------E
T ss_pred EEEeeeEEEEc--CCCCEEEEEEEeEEEEEcCCC----------c-ccEEeCCCCeEE----------ECCC-------C
Confidence 45678886654 444677789999999943221 1 467799999997 3333 4
Q ss_pred cceEEEcceEEEE
Q 009549 458 TTTIQALTEVEGF 470 (532)
Q Consensus 458 ~~tv~a~t~~~l~ 470 (532)
...+++.+.+.-+
T Consensus 78 sF~v~v~~~~~Y~ 90 (94)
T PF06865_consen 78 SFDVKVKEPTAYL 90 (94)
T ss_dssp EEEEEESS-EEEE
T ss_pred eEEEEECcceeeE
Confidence 6677777765543
No 74
>PF10047 DUF2281: Protein of unknown function (DUF2281); InterPro: IPR018739 This domain is found in putative uncharacterised proteins, though some proteins contaning this domain are described as a transcritional regulator of the Xre family.
Probab=21.41 E-value=80 Score=23.73 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=19.5
Q ss_pred CCCCHHHHHHHHHHHHHHhhhc
Q 009549 304 GRLSSRLQQKIKNYKQQNWIDD 325 (532)
Q Consensus 304 ~~lp~~L~~rv~~y~~~~~~~~ 325 (532)
+++|+++++.|.+|.++...+.
T Consensus 10 ~~LP~~~~~Evldfi~fL~~k~ 31 (66)
T PF10047_consen 10 QQLPEELQQEVLDFIEFLLQKY 31 (66)
T ss_pred HHCCHHHHHHHHHHHHHHHHhc
Confidence 4699999999999999998765
No 75
>PF06971 Put_DNA-bind_N: Putative DNA-binding protein N-terminus; InterPro: IPR009718 This entry represents the C terminus (approximately 30 residues) of a number of Rex proteins. These are redox-sensing repressors that appear to be widespread among Gram-positive bacteria []. They modulate transcription in response to changes in cellular NADH/NAD(+) redox state. Rex is predicted to include a pyridine nucleotide-binding domain (Rossmann fold), and residues that might play key structural and nucleotide binding roles are highly conserved.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0051775 response to redox state, 0005737 cytoplasm; PDB: 3IL2_B 3IKT_A 3IKV_B 1XCB_F 2DT5_A 2VT3_A 2VT2_A 3KEO_B 3KET_A 3KEQ_A ....
Probab=20.64 E-value=2.3e+02 Score=20.03 Aligned_cols=42 Identities=7% Similarity=0.119 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHHHHHHHHhhh-cCCCC---H---HHHHHhCChhHHHHH
Q 009549 304 GRLSSRLQQKIKNYKQQNWID-DKHAD---V---VNLVNNLPQGLRSQV 345 (532)
Q Consensus 304 ~~lp~~L~~rv~~y~~~~~~~-~~~~~---~---~~il~~Lp~~Lr~~i 345 (532)
+++|+...+|+-.|+.+.-.- ..|.+ . .+.+.-=|.++|+|+
T Consensus 1 k~Ip~~ti~RL~~Y~r~L~~l~~~G~~~vSS~~La~~~gi~~~qVRKDl 49 (50)
T PF06971_consen 1 KKIPKATIRRLPLYLRYLEQLKEEGVERVSSQELAEALGITPAQVRKDL 49 (50)
T ss_dssp -S-SHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHHTS-HHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCeeECHHHHHHHHCCCHHHhcccC
Confidence 479999999999999988763 33432 2 344455566677664
Done!