Query 009549
Match_columns 532
No_of_seqs 298 out of 2555
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 07:41:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009549.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009549hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3beh_A MLL3241 protein; transm 100.0 1.5E-32 5E-37 281.7 12.4 180 229-488 159-338 (355)
2 2ptm_A Hyperpolarization-activ 100.0 2.4E-31 8.2E-36 249.8 19.3 183 282-488 2-184 (198)
3 3bpz_A Potassium/sodium hyperp 100.0 8E-31 2.7E-35 247.0 19.6 182 282-488 3-184 (202)
4 3ukn_A Novel protein similar t 100.0 1.1E-31 3.9E-36 254.7 13.2 185 281-488 5-189 (212)
5 4f8a_A Potassium voltage-gated 99.8 1.4E-19 4.9E-24 162.7 14.8 137 330-488 5-141 (160)
6 1orq_C Potassium channel; volt 99.8 1.1E-20 3.9E-25 180.4 -1.0 176 27-283 35-217 (223)
7 3ocp_A PRKG1 protein; serine/t 99.7 9.4E-18 3.2E-22 147.3 11.0 129 336-488 7-135 (139)
8 3mdp_A Cyclic nucleotide-bindi 99.7 2.8E-16 9.6E-21 137.9 14.9 119 351-488 5-126 (142)
9 3idb_B CAMP-dependent protein 99.7 1.4E-16 4.8E-21 143.5 12.7 125 344-488 30-154 (161)
10 2pqq_A Putative transcriptiona 99.7 4.5E-16 1.5E-20 137.6 15.3 119 351-488 4-122 (149)
11 3gyd_A CNMP-BD protein, cyclic 99.7 5.8E-16 2E-20 143.4 14.9 140 330-488 13-156 (187)
12 1wgp_A Probable cyclic nucleot 99.7 1.1E-16 3.8E-21 139.8 9.4 126 352-488 6-133 (137)
13 4ev0_A Transcription regulator 99.7 2.1E-15 7.3E-20 142.3 17.4 116 354-488 1-116 (216)
14 3shr_A CGMP-dependent protein 99.6 9.3E-16 3.2E-20 152.6 13.5 134 331-488 18-151 (299)
15 2z69_A DNR protein; beta barre 99.6 3E-15 1E-19 133.2 15.3 119 351-488 11-130 (154)
16 2a9h_A Voltage-gated potassium 99.6 7.9E-16 2.7E-20 137.0 11.0 54 230-283 83-136 (155)
17 1vp6_A CNBD, cyclic-nucleotide 99.6 4.4E-15 1.5E-19 129.7 14.7 113 350-488 9-121 (138)
18 2r9r_B Paddle chimera voltage 99.6 1.2E-16 4E-21 170.2 4.5 55 229-283 373-427 (514)
19 3pna_A CAMP-dependent protein 99.6 3.1E-15 1.1E-19 133.7 13.1 117 348-488 34-150 (154)
20 3dn7_A Cyclic nucleotide bindi 99.6 2.9E-15 9.9E-20 139.0 13.3 120 350-488 5-125 (194)
21 3dv8_A Transcriptional regulat 99.6 9E-15 3.1E-19 138.4 16.8 118 352-488 3-122 (220)
22 3d0s_A Transcriptional regulat 99.6 4.9E-15 1.7E-19 141.1 13.0 119 351-488 5-123 (227)
23 3fx3_A Cyclic nucleotide-bindi 99.6 1.2E-14 4.2E-19 139.3 15.7 121 349-488 8-128 (237)
24 3e97_A Transcriptional regulat 99.6 1.1E-14 3.9E-19 138.9 15.3 119 351-488 5-123 (231)
25 3vou_A ION transport 2 domain 99.6 5.3E-15 1.8E-19 131.3 11.2 83 231-313 52-148 (148)
26 3dkw_A DNR protein; CRP-FNR, H 99.6 2.1E-14 7.2E-19 136.5 15.0 120 351-488 8-127 (227)
27 2d93_A RAP guanine nucleotide 99.6 9.8E-16 3.3E-20 133.5 5.1 125 338-486 2-128 (134)
28 4h33_A LMO2059 protein; bilaye 99.6 3.5E-15 1.2E-19 130.4 8.4 89 231-319 43-135 (137)
29 2gau_A Transcriptional regulat 99.6 3E-14 1E-18 136.1 15.0 115 355-488 13-127 (232)
30 3iwz_A CAP-like, catabolite ac 99.6 5E-14 1.7E-18 134.2 16.1 120 351-488 10-134 (230)
31 4ava_A Lysine acetyltransferas 99.6 2.9E-14 1E-18 144.0 14.6 118 350-488 11-128 (333)
32 1zyb_A Transcription regulator 99.6 4.6E-14 1.6E-18 135.0 15.1 120 351-488 17-138 (232)
33 3of1_A CAMP-dependent protein 99.5 1.3E-14 4.4E-19 139.6 10.4 115 350-488 5-119 (246)
34 3shr_A CGMP-dependent protein 99.5 2.6E-14 9E-19 142.1 12.8 123 348-488 153-275 (299)
35 3of1_A CAMP-dependent protein 99.5 3.4E-14 1.2E-18 136.6 12.0 117 349-488 122-238 (246)
36 3tnp_B CAMP-dependent protein 99.5 1.7E-14 5.9E-19 150.3 10.6 123 346-488 139-261 (416)
37 2qcs_B CAMP-dependent protein 99.5 1E-13 3.5E-18 137.1 15.7 121 349-488 154-275 (291)
38 2qcs_B CAMP-dependent protein 99.5 6.7E-14 2.3E-18 138.4 14.0 117 348-488 35-151 (291)
39 2ih3_C Voltage-gated potassium 99.5 8.6E-14 2.9E-18 119.1 11.7 55 230-284 60-114 (122)
40 3ryp_A Catabolite gene activat 99.5 2.6E-13 8.9E-18 127.2 15.8 113 358-488 2-114 (210)
41 2oz6_A Virulence factor regula 99.5 4.2E-13 1.4E-17 125.5 16.0 111 363-488 1-111 (207)
42 4din_B CAMP-dependent protein 99.5 8.4E-14 2.9E-18 143.5 10.5 117 348-488 126-242 (381)
43 2fmy_A COOA, carbon monoxide o 99.5 2.4E-13 8.1E-18 128.7 12.7 110 352-488 4-113 (220)
44 3eff_K Voltage-gated potassium 99.5 1.7E-13 5.7E-18 120.4 10.6 54 230-283 39-92 (139)
45 4din_B CAMP-dependent protein 99.5 1.9E-13 6.4E-18 140.9 11.9 121 348-488 244-366 (381)
46 3kcc_A Catabolite gene activat 99.5 1E-12 3.4E-17 128.1 15.8 110 361-488 55-164 (260)
47 1o5l_A Transcriptional regulat 99.4 4.1E-13 1.4E-17 126.6 11.4 114 357-488 4-117 (213)
48 1o7f_A CAMP-dependent RAP1 gua 99.4 4.7E-13 1.6E-17 141.7 13.2 133 336-488 26-160 (469)
49 3tnp_B CAMP-dependent protein 99.4 3.1E-13 1.1E-17 140.9 11.4 127 349-488 264-390 (416)
50 1ft9_A Carbon monoxide oxidati 99.4 3.9E-13 1.3E-17 127.5 10.8 109 353-488 1-109 (222)
51 1o7f_A CAMP-dependent RAP1 gua 99.4 8.8E-13 3E-17 139.6 12.7 117 349-488 334-452 (469)
52 4f7z_A RAP guanine nucleotide 99.4 1.1E-12 3.8E-17 151.5 14.1 137 332-488 23-160 (999)
53 3e6c_C CPRK, cyclic nucleotide 99.4 2.3E-12 7.7E-17 124.6 12.6 114 353-488 10-123 (250)
54 3la7_A Global nitrogen regulat 99.3 1.8E-11 6.1E-16 117.8 14.3 107 365-488 30-139 (243)
55 2bgc_A PRFA; bacterial infecti 99.3 3.1E-11 1.1E-15 115.7 15.5 109 362-488 3-114 (238)
56 3cf6_E RAP guanine nucleotide 99.3 4.3E-12 1.5E-16 139.8 10.3 134 331-488 12-147 (694)
57 2q67_A Potassium channel prote 99.3 1.4E-11 4.7E-16 103.9 10.5 53 231-283 49-101 (114)
58 2k1e_A Water soluble analogue 99.3 1.7E-12 5.7E-17 107.6 4.3 53 231-283 40-92 (103)
59 4f7z_A RAP guanine nucleotide 99.2 3E-11 1E-15 139.6 13.7 115 348-485 333-449 (999)
60 3ouf_A Potassium channel prote 99.2 8E-11 2.7E-15 96.1 11.5 52 232-283 33-84 (97)
61 3ldc_A Calcium-gated potassium 99.2 2.5E-11 8.6E-16 95.9 7.0 53 231-283 28-80 (82)
62 3pjs_K KCSA, voltage-gated pot 99.1 7.3E-12 2.5E-16 113.1 1.1 54 230-283 66-119 (166)
63 3b02_A Transcriptional regulat 99.1 4.4E-10 1.5E-14 104.0 11.9 85 378-488 2-86 (195)
64 1xl4_A Inward rectifier potass 99.0 7.9E-10 2.7E-14 109.0 9.8 54 230-283 81-134 (301)
65 2zcw_A TTHA1359, transcription 99.0 2.1E-09 7E-14 100.0 9.9 91 371-488 1-93 (202)
66 1p7b_A Integral membrane chann 98.9 5.5E-10 1.9E-14 111.3 6.0 53 231-283 96-148 (333)
67 3um7_A Potassium channel subfa 98.9 2.7E-09 9.2E-14 104.8 7.9 53 231-283 115-167 (309)
68 2qks_A KIR3.1-prokaryotic KIR 98.8 6.3E-09 2.1E-13 103.4 6.8 53 231-283 78-130 (321)
69 4gx0_A TRKA domain protein; me 98.7 5.1E-08 1.7E-12 105.5 10.3 53 231-283 51-104 (565)
70 3ukm_A Potassium channel subfa 98.6 3E-08 1E-12 95.9 6.9 53 231-283 93-145 (280)
71 3sya_A G protein-activated inw 98.6 9.6E-08 3.3E-12 94.9 10.1 53 231-283 91-145 (340)
72 3um7_A Potassium channel subfa 98.6 2.6E-08 9E-13 97.8 5.6 53 231-283 224-282 (309)
73 3ukm_A Potassium channel subfa 98.6 3.5E-08 1.2E-12 95.4 5.9 53 231-283 201-260 (280)
74 3spc_A Inward-rectifier K+ cha 98.5 3.8E-07 1.3E-11 90.8 10.4 53 231-283 94-148 (343)
75 3rvy_A ION transport protein; 98.5 1.6E-07 5.5E-12 92.4 7.7 55 229-283 178-238 (285)
76 1lnq_A MTHK channels, potassiu 98.4 3.6E-08 1.2E-12 99.5 -0.5 52 232-283 46-97 (336)
77 4dxw_A Navrh, ION transport pr 96.6 0.0016 5.6E-08 61.3 4.8 23 229-251 163-185 (229)
78 3fjs_A Uncharacterized protein 70.0 20 0.00069 28.7 8.3 68 374-471 37-104 (114)
79 2ozj_A Cupin 2, conserved barr 66.1 26 0.00089 27.7 8.2 66 377-472 42-107 (114)
80 2kyh_A KVAP, voltage-gated pot 64.5 2.6 9E-05 36.2 1.8 47 31-90 52-99 (147)
81 3rns_A Cupin 2 conserved barre 62.5 26 0.00088 32.0 8.4 69 374-472 38-106 (227)
82 1ors_C Potassium channel; volt 60.6 5.8 0.0002 33.2 3.2 45 31-89 37-83 (132)
83 1yhf_A Hypothetical protein SP 60.3 41 0.0014 26.4 8.4 68 375-472 42-109 (115)
84 2pfw_A Cupin 2, conserved barr 55.4 53 0.0018 25.7 8.3 68 375-472 36-103 (116)
85 3lwc_A Uncharacterized protein 53.7 69 0.0023 25.8 8.7 45 377-435 44-88 (119)
86 4e2g_A Cupin 2 conserved barre 52.9 63 0.0022 25.7 8.5 79 374-482 42-124 (126)
87 3kg2_A Glutamate receptor 2; I 42.4 15 0.00051 40.5 3.7 52 231-283 563-614 (823)
88 2bnm_A Epoxidase; oxidoreducta 39.7 1E+02 0.0035 26.9 8.4 50 377-435 121-173 (198)
89 3rns_A Cupin 2 conserved barre 39.6 82 0.0028 28.5 7.8 68 374-471 154-222 (227)
90 1zvf_A 3-hydroxyanthranilate 3 37.4 1.2E+02 0.0041 26.5 7.8 59 392-475 53-114 (176)
91 1o5u_A Novel thermotoga mariti 36.9 1.5E+02 0.005 23.0 8.5 46 376-435 34-79 (101)
92 1yfu_A 3-hydroxyanthranilate-3 36.9 41 0.0014 29.4 4.8 35 392-435 54-88 (174)
93 1v70_A Probable antibiotics sy 34.7 66 0.0023 24.2 5.5 48 375-435 30-78 (105)
94 2gu9_A Tetracenomycin polyketi 34.5 64 0.0022 24.8 5.5 48 375-435 23-73 (113)
95 3d82_A Cupin 2, conserved barr 34.2 70 0.0024 24.1 5.6 50 394-473 51-100 (102)
96 3h8u_A Uncharacterized conserv 33.3 59 0.002 25.9 5.2 50 374-435 40-90 (125)
97 3bcw_A Uncharacterized protein 32.7 1.2E+02 0.0041 24.6 6.9 43 380-435 56-98 (123)
98 2pyt_A Ethanolamine utilizatio 32.2 99 0.0034 25.4 6.4 44 377-435 61-104 (133)
99 1dgw_A Canavalin; duplicated s 31.8 37 0.0013 29.7 3.8 53 374-435 42-94 (178)
100 2qnk_A 3-hydroxyanthranilate 3 31.2 62 0.0021 30.6 5.3 61 390-476 48-108 (286)
101 3d0j_A Uncharacterized protein 30.9 83 0.0028 26.4 5.5 64 390-475 47-110 (140)
102 2q1z_B Anti-sigma factor CHRR, 30.3 89 0.003 27.7 6.2 65 374-472 126-192 (195)
103 2i45_A Hypothetical protein; n 29.2 57 0.002 25.2 4.3 68 380-477 35-103 (107)
104 3es4_A Uncharacterized protein 28.7 41 0.0014 27.4 3.2 43 380-435 49-91 (116)
105 1sfn_A Conserved hypothetical 28.6 72 0.0025 29.4 5.5 50 373-435 165-215 (246)
106 3lag_A Uncharacterized protein 27.2 25 0.00086 27.4 1.7 33 374-406 18-51 (98)
107 3ibm_A Cupin 2, conserved barr 27.2 93 0.0032 26.7 5.6 48 375-435 58-105 (167)
108 4axo_A EUTQ, ethanolamine util 26.6 1.5E+02 0.005 25.2 6.6 31 392-435 83-113 (151)
109 4b29_A Dimethylsulfoniopropion 26.1 95 0.0033 28.2 5.5 46 378-435 137-182 (217)
110 3es1_A Cupin 2, conserved barr 25.8 83 0.0028 27.4 5.0 48 375-434 81-128 (172)
111 3o14_A Anti-ecfsigma factor, C 25.3 2.1E+02 0.0071 25.9 7.9 74 355-471 136-210 (223)
112 1sfn_A Conserved hypothetical 25.2 2.5E+02 0.0085 25.6 8.6 45 376-435 53-97 (246)
113 4e2q_A Ureidoglycine aminohydr 23.7 1.3E+02 0.0045 28.1 6.3 70 376-474 73-142 (266)
114 2b8m_A Hypothetical protein MJ 23.6 94 0.0032 24.3 4.7 47 377-435 31-77 (117)
115 2q30_A Uncharacterized protein 23.3 2.4E+02 0.0082 21.2 8.5 67 376-471 36-104 (110)
116 1sq4_A GLXB, glyoxylate-induce 23.2 89 0.0031 29.4 5.1 50 373-435 191-241 (278)
117 2xp1_A SPT6; transcription, IW 22.9 1.1E+02 0.0039 26.7 5.3 40 354-399 11-50 (178)
118 2kwv_A RAD30 homolog B, DNA po 22.1 21 0.00072 23.7 0.2 19 330-348 17-35 (48)
119 3kgz_A Cupin 2 conserved barre 22.1 85 0.0029 26.7 4.3 46 377-435 48-93 (156)
120 3jzv_A Uncharacterized protein 22.0 82 0.0028 27.1 4.2 47 376-435 56-102 (166)
121 2o1q_A Putative acetyl/propion 21.4 1.3E+02 0.0045 25.0 5.3 32 375-406 46-77 (145)
122 1o4t_A Putative oxalate decarb 21.0 99 0.0034 25.1 4.4 47 376-435 60-107 (133)
123 3bu7_A Gentisate 1,2-dioxygena 20.6 68 0.0023 32.1 3.7 48 376-435 126-173 (394)
124 2fqp_A Hypothetical protein BP 20.6 73 0.0025 24.2 3.2 50 375-435 20-70 (97)
125 2f4p_A Hypothetical protein TM 20.5 1.5E+02 0.0051 24.6 5.5 48 376-435 51-98 (147)
126 1vj2_A Novel manganese-contain 20.5 1.1E+02 0.0036 24.6 4.4 47 376-435 51-97 (126)
No 1
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.97 E-value=1.5e-32 Score=281.73 Aligned_cols=180 Identities=21% Similarity=0.297 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHHHhhccCCCCCcCCChhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCCCCCCCH
Q 009549 229 PQKFLHCLRWGLQNLSAFGQNLEASTDILDNIFAICMTNFGVVLFVFLIGKMQSDTERSRSREQKLKEIKQGPSFGRLSS 308 (532)
Q Consensus 229 ~~~Yi~slYwa~~TmtTvGyGdi~p~t~~E~i~~i~~mi~G~~~~a~iig~i~~i~~~~~~~~~~~~~i~~~m~~~~lp~ 308 (532)
+..|..|+||+++|||||||||++|.|..|+++++++|++|.+++++.+|.+++...+.. ++
T Consensus 159 f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~--~~---------------- 220 (355)
T 3beh_A 159 FGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEV--RR---------------- 220 (355)
T ss_dssp HSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH----------------
T ss_pred cccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH----------------
Confidence 446899999999999999999999999999999999999999999999999987622211 10
Q ss_pred HHHHHHHHHHHHHhhhcCCCCHHHHHHhCChhHHHHHHHHHhHHHhhcCcccccCCHHHHHHHHhccceeEecCCceEee
Q 009549 309 RLQQKIKNYKQQNWIDDKHADVVNLVNNLPQGLRSQVKGELGTELLRNVKEFERWGEKELVDLSDCLNPVFFTDRTRIFR 388 (532)
Q Consensus 309 ~L~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~~i~~~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~ 388 (532)
+++.+ +.+.++++++|++++++++++++..+++..|+|||.|++
T Consensus 221 ------~~~~~------------------------------~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I~~ 264 (355)
T 3beh_A 221 ------GDFVR------------------------------NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICR 264 (355)
T ss_dssp ------HHHHH------------------------------HHC------------------------------------
T ss_pred ------Hhhcc------------------------------cchhhhcccccccCCHHHHHHHHHhceEEEECCCCEEEe
Confidence 00100 246788999999999999999999999999999999999
Q ss_pred cCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeechhhhhhhhhhcCCCCCCCCCCccceEEEcceEE
Q 009549 389 EGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCGEELIAWAQQKVDNPSSSNLPISTTTIQALTEVE 468 (532)
Q Consensus 389 ~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~l~~~~~~l~~~~~~~~~~r~~tv~a~t~~~ 468 (532)
+||.++++|||.+|.|++ ...+ ...+++|++|||.++ +.+.+ |+++++|.++|+
T Consensus 265 ~G~~~~~ly~I~~G~v~v--------~~~~------~~~l~~G~~fGe~~~------l~~~~------~~~~~~A~~~~~ 318 (355)
T 3beh_A 265 IGEPGDRMFFVVEGSVSV--------ATPN------PVELGPGAFFGEMAL------ISGEP------RSATVSAATTVS 318 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcCceEEEEEeeEEEE--------EECC------eeEECCCCEEeehHH------hCCCC------cceEEEECccEE
Confidence 999999999999999999 3222 246899999999998 55443 789999999999
Q ss_pred EEEeCHHHHHHHHHHchHHH
Q 009549 469 GFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 469 l~~L~~~~f~~ll~~~P~~~ 488 (532)
++.+++++|.++++++|++.
T Consensus 319 l~~i~~~~f~~ll~~~p~~~ 338 (355)
T 3beh_A 319 LLSLHSADFQMLCSSSPEIA 338 (355)
T ss_dssp --------------------
T ss_pred EEEEeHHHHHHHHHHCHHHH
Confidence 99999999999999999996
No 2
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.97 E-value=2.4e-31 Score=249.76 Aligned_cols=183 Identities=20% Similarity=0.263 Sum_probs=168.3
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHhhhcCCCCHHHHHHhCChhHHHHHHHHHhHHHhhcCcccc
Q 009549 282 SDTERSRSREQKLKEIKQGPSFGRLSSRLQQKIKNYKQQNWIDDKHADVVNLVNNLPQGLRSQVKGELGTELLRNVKEFE 361 (532)
Q Consensus 282 ~i~~~~~~~~~~~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~~i~~~~~~~~l~~i~~F~ 361 (532)
+++++..+|+++++.+++||+.+++|++|+.||++||+|.|+ .++.+++++++.||++||.++..+++.++++++|+|+
T Consensus 2 ~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f~ 80 (198)
T 2ptm_A 2 AMDSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYR-GKMFDERHIFREVSESIRQDVANYNCRDLVASVPFFV 80 (198)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGGT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCcchh
Confidence 455677889999999999999999999999999999999998 5778999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHhccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeechhhhhh
Q 009549 362 RWGEKELVDLSDCLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCGEELIAW 441 (532)
Q Consensus 362 ~~s~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~l~~ 441 (532)
+++++++..++..+++..|.|||+|+++||.++++|||.+|.|++ +. .+|+ .+..+++|++|||.++
T Consensus 81 ~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~--------~~-~~g~--~~~~l~~G~~fGe~~~-- 147 (198)
T 2ptm_A 81 GADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDI--------IM-SDGV--IATSLSDGSYFGEICL-- 147 (198)
T ss_dssp TCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEE--------EC-TTSC--EEEEECTTCEESCHHH--
T ss_pred cCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEE--------Ee-cCCe--EEEEecCCCEechHHH--
Confidence 999999999999999999999999999999999999999999999 43 3333 6889999999999998
Q ss_pred hhhhcCCCCCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHchHHH
Q 009549 442 AQQKVDNPSSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 442 ~~~~l~~~~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
+.+.+ |+++++|.++|+++.|++++|.++++++|++.
T Consensus 148 ----~~~~~------~~~~~~a~~~~~l~~i~~~~f~~ll~~~p~~~ 184 (198)
T 2ptm_A 148 ----LTRER------RVASVKCETYCTLFSLSVQHFNQVLDEFPAMR 184 (198)
T ss_dssp ----HHSSC------CSSEEEESSCEEEEEEEHHHHHHHHHHCHHHH
T ss_pred ----cCCCc------cceEEEEeeEEEEEEEeHHHHHHHHHHChHHH
Confidence 44432 78999999999999999999999999999986
No 3
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.97 E-value=8e-31 Score=247.03 Aligned_cols=182 Identities=20% Similarity=0.249 Sum_probs=166.0
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHhhhcCCCCHHHHHHhCChhHHHHHHHHHhHHHhhcCcccc
Q 009549 282 SDTERSRSREQKLKEIKQGPSFGRLSSRLQQKIKNYKQQNWIDDKHADVVNLVNNLPQGLRSQVKGELGTELLRNVKEFE 361 (532)
Q Consensus 282 ~i~~~~~~~~~~~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~~i~~~~~~~~l~~i~~F~ 361 (532)
+++++..+|+++++.+++||+.+++|++|+.||++||+|.|+ .++.+++++++.||++||.++..+++.++++++|+|+
T Consensus 3 ~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f~ 81 (202)
T 3bpz_A 3 AMDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGELNGPLREKIVNFNCRKLVASMPLFA 81 (202)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCCchh
Confidence 345667889999999999999999999999999999999998 4788999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHhccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeechhhhhh
Q 009549 362 RWGEKELVDLSDCLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCGEELIAW 441 (532)
Q Consensus 362 ~~s~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~l~~ 441 (532)
+++++++..++..+++..|.||++|+++||.++++|||.+|.|++ +. .+|+ ...+++|++|||.++
T Consensus 82 ~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v--------~~-~~g~---~~~l~~G~~fGe~~~-- 147 (202)
T 3bpz_A 82 NADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSV--------LT-KGNK---EMKLSDGSYFGEICL-- 147 (202)
T ss_dssp TSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEE--------EC-TTSC---CEEEETTCEECHHHH--
T ss_pred cCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEE--------EE-CCCe---EEEEcCCCEeccHHH--
Confidence 999999999999999999999999999999999999999999999 42 2333 346899999999998
Q ss_pred hhhhcCCCCCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHchHHH
Q 009549 442 AQQKVDNPSSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 442 ~~~~l~~~~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
+... +++++++|.++|+++.|++++|.++++.+|++.
T Consensus 148 ----~~~~------~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~ 184 (202)
T 3bpz_A 148 ----LTRG------RRTASVRADTYCRLYSLSVDNFNEVLEEYPMMR 184 (202)
T ss_dssp ----HHCS------BCSSEEEESSCEEEEEEEHHHHHHHHHHSGGGH
T ss_pred ----hcCC------CcccEEEEeeEEEEEEEEHHHHHHHHHHCHHHH
Confidence 4433 278999999999999999999999999999986
No 4
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.97 E-value=1.1e-31 Score=254.74 Aligned_cols=185 Identities=23% Similarity=0.326 Sum_probs=165.2
Q ss_pred hhHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHhhhcCCCCHHHHHHhCChhHHHHHHHHHhHHHhhcCccc
Q 009549 281 QSDTERSRSREQKLKEIKQGPSFGRLSSRLQQKIKNYKQQNWIDDKHADVVNLVNNLPQGLRSQVKGELGTELLRNVKEF 360 (532)
Q Consensus 281 ~~i~~~~~~~~~~~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~~i~~~~~~~~l~~i~~F 360 (532)
.++.++..+|+++|+.+++||+.+++|++|+.||++||+|.|+.+++.+++++++.||++||.++..+++..++ ++|+|
T Consensus 5 ~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~~~~f 83 (212)
T 3ukn_A 5 QRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-QLPLF 83 (212)
T ss_dssp -------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-GSGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHHH-hcHHh
Confidence 34466778899999999999999999999999999999999999999999999999999999999999998877 89999
Q ss_pred ccCCHHHHHHHHhccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeechhhhh
Q 009549 361 ERWGEKELVDLSDCLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCGEELIA 440 (532)
Q Consensus 361 ~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~l~ 440 (532)
+++++++++.++..+++..|.|||+|+++||.++++|||.+|.|++ +. +|. .+..+++|++|||.++
T Consensus 84 ~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v--------~~--~~~--~~~~l~~G~~fGe~~~- 150 (212)
T 3ukn_A 84 ESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEV--------LK--DNT--VLAILGKGDLIGSDSL- 150 (212)
T ss_dssp TTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEE--------ES--SSC--EEEEECTTCEEECSCC-
T ss_pred hcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEE--------EE--CCe--EEEEecCCCCcCcHHh-
Confidence 9999999999999999999999999999999999999999999999 32 222 7899999999999998
Q ss_pred hhhhhcCCCCCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHchHHH
Q 009549 441 WAQQKVDNPSSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 441 ~~~~~l~~~~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
+.+.. .+|+++++|.++|+++.|++++|.++++.+|++.
T Consensus 151 -----~~~~~----~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~ 189 (212)
T 3ukn_A 151 -----TKEQV----IKTNANVKALTYCDLQYISLKGLREVLRLYPEYA 189 (212)
T ss_dssp -----SSSSC----CBBCSEEEESSCEEEEEEEHHHHHHHHHHCHHHH
T ss_pred -----ccCCC----CCcceEEEEcccEEEEEEeHHHHHHHHHHChHHH
Confidence 54430 1378999999999999999999999999999996
No 5
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.82 E-value=1.4e-19 Score=162.66 Aligned_cols=137 Identities=18% Similarity=0.262 Sum_probs=115.5
Q ss_pred HHHHHHhCChhHHHHHHHHHhHHHhhcCcccccCCHHHHHHHHhccceeEecCCceEeecCCCCCeEEEEEeeEEEEeec
Q 009549 330 VVNLVNNLPQGLRSQVKGELGTELLRNVKEFERWGEKELVDLSDCLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSA 409 (532)
Q Consensus 330 ~~~il~~Lp~~Lr~~i~~~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~ 409 (532)
.+++++.||++||.++..+++.+.++++|+|++++++.++.++..++...|.+|++|+++||.++++|||.+|.|+++
T Consensus 5 ~~~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~-- 82 (160)
T 4f8a_A 5 TEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVI-- 82 (160)
T ss_dssp ----------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEE--
T ss_pred hHHHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEE--
Confidence 456999999999999999999999999999999999999999999999999999999999999999999999999993
Q ss_pred ccceeeecCCCCCcceeecCCCCeechhhhhhhhhhcCCCCCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHchHHH
Q 009549 410 RNVTIATSSDGHNGKKDYLRYGDFCGEELIAWAQQKVDNPSSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~l~~G~~FGe~~l~~~~~~l~~~~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
. ++ . .+..+++|++||+.++ +.... .+++++++|.++|+++.|++++|.++++++|++.
T Consensus 83 ------~--~~-~-~~~~~~~G~~fG~~~~------~~~~~----~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~ 141 (160)
T 4f8a_A 83 ------Q--DD-E-VVAILGKGDVFGDVFW------KEATL----AQSCANVRALTYCDLHVIKRDALQKVLEFYTAFS 141 (160)
T ss_dssp ------E--TT-E-EEEEEETTCEEECCTT------TCSSC----CBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHH
T ss_pred ------E--CC-E-EEEEecCCCEeCcHHH------hcCcc----cceEEEEEECCceEEEEEcHHHHHHHHHHHHHHH
Confidence 2 11 1 6889999999999998 54410 1378999999999999999999999999999986
No 6
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.77 E-value=1.1e-20 Score=180.38 Aligned_cols=176 Identities=15% Similarity=0.154 Sum_probs=116.3
Q ss_pred CCcceeEEeeehhhhhhcccceeeEEEEEEecCceEEecCHHHHHH-hhhhhHHHHHhhcChhHHHHHHHhccccCCccc
Q 009549 27 RNLGITATVLRSFIDLHKLPRIIHLIYVELCGNKEEVKKSAYATAR-LWIFFLIDILAVLPIPQVLVMLAKSHRMSGRKF 105 (532)
Q Consensus 27 ~~~~~~~~~~~~~~d~~f~~~~~Di~l~~~~~~g~~V~~d~~~Ia~-lk~~F~~Dlis~lP~~~~~~~~~~~~~~~~~~~ 105 (532)
.+....+..+|.+++++| .+|++++.+.. .++ .+ +|+ +++|++|++|++...... . ..+...
T Consensus 35 ~~~~~~l~~~d~~~~~iF---~~e~~lr~~~~------~~~---~~y~~~-~iiDllailP~~~~~~~~--~-~~~~~~- 97 (223)
T 1orq_C 35 GEYLVRLYLVDLILVIIL---WADYAYRAYKS------GDP---AGYVKK-TLYEIPALVPAGLLALIE--G-HLAGLG- 97 (223)
T ss_dssp TCTTTHHHHHHHHHHHHH---HHHHHHHHHTT------SCH---HHHHHH-HHHHCTTHHHHHHHHHHH--H-HHHTTT-
T ss_pred hhhhhHHHHHHHHHHHHH---HHHHHHHHccc------ccH---HHHHHH-hHHHHHHHHHHHHHHHHh--c-chhHHH-
Confidence 334567889999999999 99999981111 111 23 666 899999999998664311 0 000111
Q ss_pred hhHHHHHHHHHHHHHHHHhhcccccccchH-----HHHHHHH-HHHHHHHHHHHHHHhHhhhhhhhhhhhhhhccCcccC
Q 009549 106 LFSMTFFLLQYVLRVIRTYGLLTKNDSTWA-----IVSFNLF-LYMHGGHVFGALWYFLAIEKVTACWKKTCINHHIRCS 179 (532)
Q Consensus 106 ~~lrl~rl~~~l~rl~r~~~~~~~~~~~~~-----~~~~~l~-~~~l~~H~~aC~w~~i~~~~~~~~w~~~c~~~~~~c~ 179 (532)
.+|.+|++ |+.|++|..+...+...... ..+..++ ..+++.|+.||+|+++..
T Consensus 98 -~lr~lRll-RllR~~r~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~------------------- 156 (223)
T 1orq_C 98 -LFRLVRLL-RFLRILLIISRGSKFLSAIADAADKIRFYHLFGAVMLTVLYGAFAIYIVEY------------------- 156 (223)
T ss_dssp -CHHHHHHH-HHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-------------------
T ss_pred -HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence 15555554 34455554432221000011 1122222 334578999999886541
Q ss_pred CcccccCCCccccccccccCCCCCCCCCcccchhhHHhhhcCcccCCChhHHHHHHHHHHHHHhhccCCCCCcCCChhhH
Q 009549 180 SRSFYCDDSLRDYKFLDEFCPITTGNKTNYDFGLFEDALQSGIVGVTDFPQKFLHCLRWGLQNLSAFGQNLEASTDILDN 259 (532)
Q Consensus 180 ~~~~~~~~~~~~~sWi~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~~Yi~slYwa~~TmtTvGyGdi~p~t~~E~ 259 (532)
.+ +++....|..|+||+++|||||||||++|.|..|+
T Consensus 157 ---------~~----------------------------------~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~ 193 (223)
T 1orq_C 157 ---------PD----------------------------------PNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGK 193 (223)
T ss_dssp ---------SS----------------------------------TTCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHH
T ss_pred ---------CC----------------------------------cCCCcCcchhHHHhHHhHHhccCCCCCCCCCHhHH
Confidence 00 01123468999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhH
Q 009549 260 IFAICMTNFGVVLFVFLIGKMQSD 283 (532)
Q Consensus 260 i~~i~~mi~G~~~~a~iig~i~~i 283 (532)
+++++.|++|.+++|+.+|.+++.
T Consensus 194 ~~~~~~~~~G~~~~~~~i~~i~~~ 217 (223)
T 1orq_C 194 VIGIAVMLTGISALTLLIGTVSNM 217 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887
No 7
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.73 E-value=9.4e-18 Score=147.34 Aligned_cols=129 Identities=20% Similarity=0.263 Sum_probs=113.4
Q ss_pred hCChhHHHHHHHHHhHHHhhcCcccccCCHHHHHHHHhccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceee
Q 009549 336 NLPQGLRSQVKGELGTELLRNVKEFERWGEKELVDLSDCLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIA 415 (532)
Q Consensus 336 ~Lp~~Lr~~i~~~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~ 415 (532)
++|+.+|.+...+...+.++++++|++++++.++.++..++...|.+|++|+++||.++.+|||.+|.|++.
T Consensus 7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~-------- 78 (139)
T 3ocp_A 7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVT-------- 78 (139)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEE--------
T ss_pred cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEE--------
Confidence 688999999999999999999999999999999999999999999999999999999999999999999992
Q ss_pred ecCCCCCcceeecCCCCeechhhhhhhhhhcCCCCCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHchHHH
Q 009549 416 TSSDGHNGKKDYLRYGDFCGEELIAWAQQKVDNPSSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 416 ~~~~~~~~~~~~l~~G~~FGe~~l~~~~~~l~~~~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
. +|+ .+..+++|++|||.++ +...+ ++++++|.++|+++.|++++|.++++++|.++
T Consensus 79 ~--~g~--~~~~~~~G~~fGe~~~------l~~~~------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~ 135 (139)
T 3ocp_A 79 K--EGV--KLCTMGPGKVFGELAI------LYNCT------RTATVKTLVNVKLWAIDRQCFQTIMMRTGLIK 135 (139)
T ss_dssp E--TTE--EEEEECTTCEESCHHH------HHCCC------CSSEEEESSCEEEEEEEHHHHHHHHTC-----
T ss_pred E--CCE--EEEEeCCCCEeccHHH------HCCCC------cceEEEECcceEEEEEcHHHHHHHHhhChHhh
Confidence 2 222 6889999999999998 44433 78899999999999999999999999999875
No 8
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.69 E-value=2.8e-16 Score=137.89 Aligned_cols=119 Identities=17% Similarity=0.199 Sum_probs=102.2
Q ss_pred HHHhhcCcccccCCHHHHHHHHhccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcc---eee
Q 009549 351 TELLRNVKEFERWGEKELVDLSDCLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGK---KDY 427 (532)
Q Consensus 351 ~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~---~~~ 427 (532)
.+.++++|+|++++++.++.++..++...|.+|++|+++|+.++.+|+|.+|.|+++. ...+|+... +..
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~-------~~~~g~~~~~~~~~~ 77 (142)
T 3mdp_A 5 PERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFY-------SNGGAGSAANSTVCS 77 (142)
T ss_dssp TTGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEEC-------C---------CEEEE
T ss_pred HHHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEE-------ECCCCCceEeeeEEE
Confidence 3578899999999999999999999999999999999999999999999999999942 122333325 889
Q ss_pred cCCCCeechhhhhhhhhhcCCCCCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHchHHH
Q 009549 428 LRYGDFCGEELIAWAQQKVDNPSSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 428 l~~G~~FGe~~l~~~~~~l~~~~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
+++|++||+.++ +.+.+ ++++++|.++|+++.|++++|.++++++|++.
T Consensus 78 ~~~G~~fG~~~~------~~~~~------~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~ 126 (142)
T 3mdp_A 78 VVPGAIFGVSSL------IKPYH------YTSSARATKPVRVVDINGARLREMSENNQALG 126 (142)
T ss_dssp ECTTCEECGGGS------STTCB------CSSEEEESSCEEEEEEEHHHHHHHHHHCHHHH
T ss_pred ecCCCEechHHH------cCCCC------ceEEEEECCcEEEEEEeHHHHHHHHHHChHHH
Confidence 999999999998 55443 78899999999999999999999999999997
No 9
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.69 E-value=1.4e-16 Score=143.53 Aligned_cols=125 Identities=13% Similarity=0.141 Sum_probs=110.0
Q ss_pred HHHHHHhHHHhhcCcccccCCHHHHHHHHhccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCc
Q 009549 344 QVKGELGTELLRNVKEFERWGEKELVDLSDCLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNG 423 (532)
Q Consensus 344 ~i~~~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~ 423 (532)
+-..+...+.++++++|++++++.++.++..++...|.+|++|+++||.++.+|+|.+|.|+++ ...+|+..
T Consensus 30 ~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~--------~~~~g~~~ 101 (161)
T 3idb_B 30 DDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIY--------VKCDGVGR 101 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEE--------EEETTEEE
T ss_pred HHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEE--------EcCCCCeE
Confidence 3344556789999999999999999999999999999999999999999999999999999994 33344433
Q ss_pred ceeecCCCCeechhhhhhhhhhcCCCCCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHchHHH
Q 009549 424 KKDYLRYGDFCGEELIAWAQQKVDNPSSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 424 ~~~~l~~G~~FGe~~l~~~~~~l~~~~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
.+..+++|++|||.++ +...+ ++++++|.++|+++.|++++|.++++++|.++
T Consensus 102 ~~~~~~~G~~fGe~~~------~~~~~------~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~ 154 (161)
T 3idb_B 102 CVGNYDNRGSFGELAL------MYNTP------RAATITATSPGALWGLDRVTFRRIIVKNNAKK 154 (161)
T ss_dssp EEEEEESCCEECGGGG------TCCCC------CSSEEEESSSEEEEEEEHHHHHHHHHHHHHTS
T ss_pred EEEEcCCCCEechHHH------HcCCC------cccEEEECCCeEEEEEeHHHHHHHHHHCHHHH
Confidence 7889999999999998 65543 78999999999999999999999999999875
No 10
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.69 E-value=4.5e-16 Score=137.64 Aligned_cols=119 Identities=28% Similarity=0.344 Sum_probs=105.3
Q ss_pred HHHhhcCcccccCCHHHHHHHHhccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCC
Q 009549 351 TELLRNVKEFERWGEKELVDLSDCLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRY 430 (532)
Q Consensus 351 ~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~ 430 (532)
.+.++++++|.+++++.++.++..++...|.+|++|+++||.++.+|||.+|.|+++. ...+|+...+..+++
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~-------~~~~g~~~~~~~~~~ 76 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHR-------TSPDGRENMLAVVGP 76 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEE-------ECTTSSEEEEEEECT
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEE-------ECCCCcEEEEEEcCC
Confidence 4578899999999999999999999999999999999999999999999999999942 222344337889999
Q ss_pred CCeechhhhhhhhhhcCCCCCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHchHHH
Q 009549 431 GDFCGEELIAWAQQKVDNPSSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 431 G~~FGe~~l~~~~~~l~~~~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
|++||+.++ +...+ +.++++|.++|+++.|++++|.++++++|++.
T Consensus 77 g~~~G~~~~------~~~~~------~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~ 122 (149)
T 2pqq_A 77 SELIGELSL------FDPGP------RTATGTALTEVKLLALGHGDLQPWLNVRPEVA 122 (149)
T ss_dssp TCEESGGGG------TSCEE------CSSEEEESSCEEEEEEEGGGHHHHHHHCTHHH
T ss_pred cCEechHHh------cCCCC------cceEEEEccceEEEEEeHHHHHHHHHhCcHHH
Confidence 999999988 55442 78899999999999999999999999999986
No 11
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.67 E-value=5.8e-16 Score=143.37 Aligned_cols=140 Identities=15% Similarity=0.140 Sum_probs=116.8
Q ss_pred HHHHHHhCChhH----HHHHHHHHhHHHhhcCcccccCCHHHHHHHHhccceeEecCCceEeecCCCCCeEEEEEeeEEE
Q 009549 330 VVNLVNNLPQGL----RSQVKGELGTELLRNVKEFERWGEKELVDLSDCLNPVFFTDRTRIFREGDPIDEMVFVLEGKLW 405 (532)
Q Consensus 330 ~~~il~~Lp~~L----r~~i~~~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~ 405 (532)
+.+..+.++|.| +.+...+...+.++++|+|++++++.++.++..++...|.+|++|+++|+.++.+|+|.+|.|+
T Consensus 13 ~~~~~~~~~~dli~~~~~~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~ 92 (187)
T 3gyd_A 13 ENLYFQGMYPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVN 92 (187)
T ss_dssp HHHHTSTTGGGCEEEEEGGGGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEE
T ss_pred cceeecCCchHHhccCccHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEE
Confidence 444555555543 3344455567899999999999999999999999999999999999999999999999999999
Q ss_pred EeecccceeeecCCCCCcceeecCCCCeechhhhhhhhhhcCCCCCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHch
Q 009549 406 SHSARNVTIATSSDGHNGKKDYLRYGDFCGEELIAWAQQKVDNPSSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHR 485 (532)
Q Consensus 406 v~~~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~l~~~~~~l~~~~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P 485 (532)
++. ...+|+...+..+++|++||+.++ +.+.+ ++++++|.++|+++.|++++|.++++++|
T Consensus 93 v~~-------~~~~g~~~~~~~~~~G~~fGe~~~------l~~~~------~~~~v~A~~~~~v~~i~~~~~~~l~~~~p 153 (187)
T 3gyd_A 93 VIK-------DIPNKGIQTIAKVGAGAIIGEMSM------IDGMP------RSASCVASLPTDFAVLSRDALYQLLANMP 153 (187)
T ss_dssp EEE-------EETTTEEEEEEEEETTCEESHHHH------HHCCC------CSSEEEEEEEEEEEEEEHHHHHHHHHHCH
T ss_pred EEE-------ECCCCCeEEEEEccCCCeeeeHHH------hCCCC------eeEEEEECCCeEEEEEcHHHHHHHHHHCh
Confidence 942 122443337889999999999998 44443 78899999999999999999999999999
Q ss_pred HHH
Q 009549 486 RYQ 488 (532)
Q Consensus 486 ~~~ 488 (532)
++.
T Consensus 154 ~~~ 156 (187)
T 3gyd_A 154 KLG 156 (187)
T ss_dssp HHH
T ss_pred HHH
Confidence 997
No 12
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.67 E-value=1.1e-16 Score=139.85 Aligned_cols=126 Identities=44% Similarity=0.757 Sum_probs=103.4
Q ss_pred HHhhcCcccccCCHHHHHHHHhccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCccee--ecC
Q 009549 352 ELLRNVKEFERWGEKELVDLSDCLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKD--YLR 429 (532)
Q Consensus 352 ~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~--~l~ 429 (532)
+.++++++|++++++.++.++..++...|.+|++|+++||.++.+|||.+|.|++ ....+|+...+. .++
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~--------~~~~~g~~~~~~~~~l~ 77 (137)
T 1wgp_A 6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLES--------VTTDGGRSGFYNRSLLK 77 (137)
T ss_dssp CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEE--------ECCSSCSSSSSCEEECC
T ss_pred HHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEE--------EEcCCCcceeeeeeeec
Confidence 3578999999999999999999999999999999999999999999999999998 433445443455 999
Q ss_pred CCCeechhhhhhhhhhcCCCCCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHchHHH
Q 009549 430 YGDFCGEELIAWAQQKVDNPSSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 430 ~G~~FGe~~l~~~~~~l~~~~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
+|++|||.++++. +.+.+....++++++++|.++|+++.|++++|.++++++|+++
T Consensus 78 ~G~~fGe~~l~~~---~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~ 133 (137)
T 1wgp_A 78 EGDFCGDELLTWA---LDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRSG 133 (137)
T ss_dssp TTCBSSTHHHHHH---HCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCCT
T ss_pred CCCEecHHHHHHH---hccccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCHhhH
Confidence 9999999984111 3333211111357899999999999999999999999999874
No 13
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.66 E-value=2.1e-15 Score=142.28 Aligned_cols=116 Identities=17% Similarity=0.223 Sum_probs=100.9
Q ss_pred hhcCcccccCCHHHHHHHHhccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCe
Q 009549 354 LRNVKEFERWGEKELVDLSDCLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDF 433 (532)
Q Consensus 354 l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~ 433 (532)
++++|+|++++++.++.++..++...|.+|++|+++||.++++|||.+|.|+++. ...+|+...+..+++|++
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~-------~~~~g~~~~~~~~~~g~~ 73 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFR-------THLGGQERTLALLGPGEL 73 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEE-------ECSSSCEEEEEEECTTCE
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEE-------ECCCCCEEEEEEecCCCE
Confidence 4688999999999999999999999999999999999999999999999999942 223444437889999999
Q ss_pred echhhhhhhhhhcCCCCCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHchHHH
Q 009549 434 CGEELIAWAQQKVDNPSSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 434 FGe~~l~~~~~~l~~~~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
||+.++ +.+.+ ++++++|.++|+++.+++++|.++++++|++.
T Consensus 74 ~G~~~~------~~~~~------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~ 116 (216)
T 4ev0_A 74 FGEMSL------LDEGE------RSASAVAVEDTELLALFREDYLALIRRLPLVA 116 (216)
T ss_dssp ECHHHH------HHCCB------CSSEEEESSSEEEEEEEHHHHHHHHHHCHHHH
T ss_pred Eeehhh------cCCCC------cceEEEEcCCEEEEEEcHHHHHHHHHHCcHHH
Confidence 999988 44432 68899999999999999999999999999997
No 14
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.64 E-value=9.3e-16 Score=152.60 Aligned_cols=134 Identities=18% Similarity=0.235 Sum_probs=119.5
Q ss_pred HHHHHhCChhHHHHHHHHHhHHHhhcCcccccCCHHHHHHHHhccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecc
Q 009549 331 VNLVNNLPQGLRSQVKGELGTELLRNVKEFERWGEKELVDLSDCLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSAR 410 (532)
Q Consensus 331 ~~il~~Lp~~Lr~~i~~~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~ 410 (532)
.....++|+..|.+...+...+.++++++|++++++.+..++..++...|.+|++|+++||.++.+|||.+|.|++..
T Consensus 18 ~~~~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~-- 95 (299)
T 3shr_A 18 RGSMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK-- 95 (299)
T ss_dssp ----CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEE--
T ss_pred ccccCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEE--
Confidence 445668999999999999999999999999999999999999999999999999999999999999999999999932
Q ss_pred cceeeecCCCCCcceeecCCCCeechhhhhhhhhhcCCCCCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHchHHH
Q 009549 411 NVTIATSSDGHNGKKDYLRYGDFCGEELIAWAQQKVDNPSSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 411 ~~~~~~~~~~~~~~~~~l~~G~~FGe~~l~~~~~~l~~~~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
+|+ .+..+.+|++|||.++ +.+.+ |+++++|.++|+++.|++++|.+++..+|...
T Consensus 96 --------~g~--~~~~~~~G~~fGe~~l------l~~~~------~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~~~ 151 (299)
T 3shr_A 96 --------EGV--KLCTMGPGKVFGELAI------LYNCT------RTATVKTLVNVKLWAIDRQCFQTIMMRTGLIK 151 (299)
T ss_dssp --------TTE--EEEEECTTCEESCSGG------GTTTB------CCSEEEESSCEEEEEECHHHHHHHHHHHHHHH
T ss_pred --------CCE--EEEEeCCCCeeeHhHH------hcCCC------CCcEEEEcCCeEEEEEcHHHHHHHhhHhHHHH
Confidence 222 6889999999999998 55443 78999999999999999999999999999876
No 15
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.64 E-value=3e-15 Score=133.20 Aligned_cols=119 Identities=15% Similarity=0.222 Sum_probs=103.1
Q ss_pred HHHhhcCcccccCCHHHHHHHHhccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeec-CCCCCcceeecC
Q 009549 351 TELLRNVKEFERWGEKELVDLSDCLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATS-SDGHNGKKDYLR 429 (532)
Q Consensus 351 ~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~-~~~~~~~~~~l~ 429 (532)
.+.++++++|.+++++.++.++..++...|.+|++|+++|+.++.+|||.+|.|+++ .. .+|+...+..++
T Consensus 11 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~--------~~~~~g~~~~~~~~~ 82 (154)
T 2z69_A 11 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIY--------RLTPEGQEKILEVTN 82 (154)
T ss_dssp HHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEE--------CCCC-----CCEEEC
T ss_pred HHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEE--------EECCCCCEEEEEEcc
Confidence 467899999999999999999999999999999999999999999999999999993 32 234433788999
Q ss_pred CCCeechhhhhhhhhhcCCCCCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHchHHH
Q 009549 430 YGDFCGEELIAWAQQKVDNPSSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 430 ~G~~FGe~~l~~~~~~l~~~~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
+|++||+.++ +...+ ++.++++|.++|+++.|++++|.++++++|++.
T Consensus 83 ~G~~~G~~~~------~~~~~-----~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~ 130 (154)
T 2z69_A 83 ERNTFAEAMM------FMDTP-----NYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLA 130 (154)
T ss_dssp TTEEESGGGG------GSSCS-----BCSSEEEESSSEEEEEEEHHHHHHHHTTCHHHH
T ss_pred CCCeeccHhh------ccCCC-----CCceEEEEccceEEEEECHHHHHHHHHHChHHH
Confidence 9999999998 44331 268899999999999999999999999999986
No 16
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.64 E-value=7.9e-16 Score=136.96 Aligned_cols=54 Identities=9% Similarity=0.225 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHhhccCCCCCcCCChhhHHHHHHHHHHHHHHHHHHHhhhhhH
Q 009549 230 QKFLHCLRWGLQNLSAFGQNLEASTDILDNIFAICMTNFGVVLFVFLIGKMQSD 283 (532)
Q Consensus 230 ~~Yi~slYwa~~TmtTvGyGdi~p~t~~E~i~~i~~mi~G~~~~a~iig~i~~i 283 (532)
..|..|+||+++|||||||||++|.|..+++++++.+++|.+++|+.+|.+++.
T Consensus 83 ~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~ 136 (155)
T 2a9h_A 83 ISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATW 136 (155)
T ss_dssp TSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999999999999999999999987
No 17
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.63 E-value=4.4e-15 Score=129.70 Aligned_cols=113 Identities=27% Similarity=0.346 Sum_probs=101.3
Q ss_pred hHHHhhcCcccccCCHHHHHHHHhccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecC
Q 009549 350 GTELLRNVKEFERWGEKELVDLSDCLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLR 429 (532)
Q Consensus 350 ~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~ 429 (532)
..+.++++++|++++++.++.++..++...|.+|++|+++||.++.+|||.+|.|++ +..+ ...++
T Consensus 9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~--------~~~~------~~~~~ 74 (138)
T 1vp6_A 9 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSV--------ATPN------PVELG 74 (138)
T ss_dssp HHHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEE--------CSSS------CEEEC
T ss_pred HHHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEE--------EeCC------cceEC
Confidence 356789999999999999999999999999999999999999999999999999999 3222 24689
Q ss_pred CCCeechhhhhhhhhhcCCCCCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHchHHH
Q 009549 430 YGDFCGEELIAWAQQKVDNPSSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 430 ~G~~FGe~~l~~~~~~l~~~~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
+|++||+.++ +.+.+ +.++++|.++|+++.|++++|.++++++|++.
T Consensus 75 ~G~~~G~~~~------~~~~~------~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~ 121 (138)
T 1vp6_A 75 PGAFFGEMAL------ISGEP------RSATVSAATTVSLLSLHSADFQMLCSSSPEIA 121 (138)
T ss_dssp TTCEECHHHH------HHCCC------CSSCEEESSSEEEEEEEHHHHHHHHHHCHHHH
T ss_pred CCCEeeehHh------ccCCC------ceeEEEECCCEEEEEECHHHHHHHHHHCHHHH
Confidence 9999999988 44433 68899999999999999999999999999996
No 18
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.62 E-value=1.2e-16 Score=170.22 Aligned_cols=55 Identities=15% Similarity=0.197 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHHHHhhccCCCCCcCCChhhHHHHHHHHHHHHHHHHHHHhhhhhH
Q 009549 229 PQKFLHCLRWGLQNLSAFGQNLEASTDILDNIFAICMTNFGVVLFVFLIGKMQSD 283 (532)
Q Consensus 229 ~~~Yi~slYwa~~TmtTvGyGdi~p~t~~E~i~~i~~mi~G~~~~a~iig~i~~i 283 (532)
+..|..|+||+++|||||||||+.|.|..++++++++|++|.+++++.+|.+.+.
T Consensus 373 F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~ 427 (514)
T 2r9r_B 373 FPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSN 427 (514)
T ss_dssp CSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred ccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHH
Confidence 3458899999999999999999999999999999999999999999999988775
No 19
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.62 E-value=3.1e-15 Score=133.67 Aligned_cols=117 Identities=15% Similarity=0.205 Sum_probs=104.2
Q ss_pred HHhHHHhhcCcccccCCHHHHHHHHhccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceee
Q 009549 348 ELGTELLRNVKEFERWGEKELVDLSDCLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDY 427 (532)
Q Consensus 348 ~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~ 427 (532)
....+.++++++|++++++.+..++..++...|.+|++|+++||.++.+|||.+|.|+++ . +++ .+..
T Consensus 34 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~--------~--~~~--~~~~ 101 (154)
T 3pna_A 34 AALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVY--------V--NNE--WATS 101 (154)
T ss_dssp HHHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEE--------E--TTE--EEEE
T ss_pred HHHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEE--------E--CCE--EEEE
Confidence 345678899999999999999999999999999999999999999999999999999993 2 222 6788
Q ss_pred cCCCCeechhhhhhhhhhcCCCCCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHchHHH
Q 009549 428 LRYGDFCGEELIAWAQQKVDNPSSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 428 l~~G~~FGe~~l~~~~~~l~~~~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
+++|++||+.++ +...+ +.++++|.++|+++.|++++|.++++++|..+
T Consensus 102 ~~~G~~fGe~~~------~~~~~------~~~~v~A~~~~~~~~i~~~~~~~ll~~~~~~~ 150 (154)
T 3pna_A 102 VGEGGSFGELAL------IYGTP------RAATVKAKTNVKLWGIDRDSYRRILMGSTLRK 150 (154)
T ss_dssp ECTTCEECCHHH------HHCCC------CSSEEEESSCEEEEEEEHHHHHHHTHHHHHHC
T ss_pred ecCCCEeeehHh------hcCCC------cceEEEECcceEEEEEeHHHHHHHHHhChHHH
Confidence 999999999998 44433 68899999999999999999999999999764
No 20
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.62 E-value=2.9e-15 Score=139.05 Aligned_cols=120 Identities=13% Similarity=0.168 Sum_probs=104.4
Q ss_pred hHHHhhcCcccccCCHHHHHHHHhccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecC
Q 009549 350 GTELLRNVKEFERWGEKELVDLSDCLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLR 429 (532)
Q Consensus 350 ~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~ 429 (532)
+..++++++.|.+++++.++.++..++...|.+|++|+++||.++.+|||.+|.|+++. ...+|+...+..++
T Consensus 5 ~~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~-------~~~~G~e~~~~~~~ 77 (194)
T 3dn7_A 5 HTALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFF-------IDEKGIEQTTQFAI 77 (194)
T ss_dssp CHHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEE-------ECTTSCEEEEEEEE
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEE-------ECCCCCEEEEEEcc
Confidence 45678889999999999999999999999999999999999999999999999999942 22344443788899
Q ss_pred CCCeechh-hhhhhhhhcCCCCCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHchHHH
Q 009549 430 YGDFCGEE-LIAWAQQKVDNPSSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 430 ~G~~FGe~-~l~~~~~~l~~~~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
+|++|||. ++ +...+ ++++++|.++|+++.+++++|.++++++|++.
T Consensus 78 ~g~~~ge~~~~------~~~~~------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~ 125 (194)
T 3dn7_A 78 ENWWLSDYMAF------QKQQP------ADFYIQSVENCELLSITYTEQENLFERIPALE 125 (194)
T ss_dssp TTCEECCHHHH------HHTCB------CSSEEEESSCEEEEEEEHHHHHHHHHHCTTHH
T ss_pred CCcEEeehHHH------hcCCC------CceEEEEECCEEEEEEeHHHHHHHHHhCHHHH
Confidence 99999987 55 33332 68899999999999999999999999999987
No 21
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.62 E-value=9e-15 Score=138.36 Aligned_cols=118 Identities=15% Similarity=0.080 Sum_probs=103.8
Q ss_pred HHhhcCcccccCCHHHHHHHHhccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCC
Q 009549 352 ELLRNVKEFERWGEKELVDLSDCLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYG 431 (532)
Q Consensus 352 ~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G 431 (532)
++++++|+|.+++++.++.++..++...|.+|++|+++||.++.+|||.+|.|+++. ...+|+...+..+++|
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-------~~~~G~~~~~~~~~~G 75 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYI-------LSDEGREITLYRLFDM 75 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEE-------ECTTSCEEEEEEECTT
T ss_pred chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEE-------ECCCCCEEEEEecCCC
Confidence 578899999999999999999999999999999999999999999999999999942 2234444378899999
Q ss_pred Ce--echhhhhhhhhhcCCCCCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHchHHH
Q 009549 432 DF--CGEELIAWAQQKVDNPSSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 432 ~~--FGe~~l~~~~~~l~~~~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
++ ||+.++ +.+.+ ++++++|.++|+++.+++++|.++++++|++.
T Consensus 76 ~~~~~g~~~~------~~~~~------~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~ 122 (220)
T 3dv8_A 76 DMCLLSASCI------MRSIQ------FEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVA 122 (220)
T ss_dssp CEESGGGGGG------CTTCC------CCCEEEESSCEEEEEEEHHHHHHHHHHCHHHH
T ss_pred CeeehhHHHH------hCCCC------CceEEEEeeeeEEEEEEHHHHHHHHHHCHHHH
Confidence 99 799988 55543 78899999999999999999999999999998
No 22
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.60 E-value=4.9e-15 Score=141.10 Aligned_cols=119 Identities=23% Similarity=0.351 Sum_probs=105.6
Q ss_pred HHHhhcCcccccCCHHHHHHHHhccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCC
Q 009549 351 TELLRNVKEFERWGEKELVDLSDCLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRY 430 (532)
Q Consensus 351 ~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~ 430 (532)
.+.++++|+|.+++++.++.++..++...|.+|++|+++||.++.+|||.+|.|+++. ...+|+...+..+++
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-------~~~~g~~~~~~~~~~ 77 (227)
T 3d0s_A 5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGR-------RAPDGRENLLTIMGP 77 (227)
T ss_dssp HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEE-------ECTTSCEEEEEEECT
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEE-------ECCCCcEEEEEEecC
Confidence 4578999999999999999999999999999999999999999999999999999942 223444437889999
Q ss_pred CCeechhhhhhhhhhcCCCCCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHchHHH
Q 009549 431 GDFCGEELIAWAQQKVDNPSSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 431 G~~FGe~~l~~~~~~l~~~~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
|++||+.++ +.+.+ ++++++|.++|+++.|++++|.++++++|++.
T Consensus 78 G~~~G~~~~------~~~~~------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~ 123 (227)
T 3d0s_A 78 SDMFGELSI------FDPGP------RTSSATTITEVRAVSMDRDALRSWIADRPEIS 123 (227)
T ss_dssp TCEESCHHH------HSCSC------CSSEEEESSCEEEEEEEHHHHHHTTSSCHHHH
T ss_pred CCEEeeHHH------cCCCC------ceeEEEEcccEEEEEEeHHHHHHHHHHChHHH
Confidence 999999998 55443 78899999999999999999999999999997
No 23
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.60 E-value=1.2e-14 Score=139.27 Aligned_cols=121 Identities=12% Similarity=0.124 Sum_probs=107.0
Q ss_pred HhHHHhhcCcccccCCHHHHHHHHhccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeec
Q 009549 349 LGTELLRNVKEFERWGEKELVDLSDCLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYL 428 (532)
Q Consensus 349 ~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l 428 (532)
...+.++++|+|.+++++.++.++..++...|.+|++|+++|+.++.+|||.+|.|+++. ...+|+...+..+
T Consensus 8 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-------~~~~G~~~~~~~~ 80 (237)
T 3fx3_A 8 AQKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFR-------MTPTGSEAVVSVF 80 (237)
T ss_dssp HHHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEE-------ECTTSCEEEEEEE
T ss_pred HHHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEE-------ECCCCCEEEEEEe
Confidence 346788999999999999999999999999999999999999999999999999999942 2234444378899
Q ss_pred CCCCeechhhhhhhhhhcCCCCCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHchHHH
Q 009549 429 RYGDFCGEELIAWAQQKVDNPSSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 429 ~~G~~FGe~~l~~~~~~l~~~~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
++|++||+.++ +...+ ++++++|.++|+++.+++++|.++++++|++.
T Consensus 81 ~~G~~~G~~~~------~~~~~------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~ 128 (237)
T 3fx3_A 81 TRGESFGEAVA------LRNTP------YPVSAEAVTPCEVMHIPSPVFVSLMRRDPEIC 128 (237)
T ss_dssp ETTEEECHHHH------HHTCC------CSSEEEESSSEEEEEEEHHHHHHHHHHCHHHH
T ss_pred CCCCEechHHH------hcCCC------CCceEEECCceEEEEEcHHHHHHHHHHCHHHH
Confidence 99999999998 43332 68899999999999999999999999999997
No 24
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.60 E-value=1.1e-14 Score=138.92 Aligned_cols=119 Identities=14% Similarity=0.180 Sum_probs=105.3
Q ss_pred HHHhhcCcccccCCHHHHHHHHhccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCC
Q 009549 351 TELLRNVKEFERWGEKELVDLSDCLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRY 430 (532)
Q Consensus 351 ~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~ 430 (532)
.+.++++|+|.+++++.+..++..++...|.+|++|+++||.++.+|||.+|.|+++. ...+|+...+..+++
T Consensus 5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-------~~~~g~~~~~~~~~~ 77 (231)
T 3e97_A 5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSR-------VSLGGRERVLGDIYA 77 (231)
T ss_dssp HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEE-------ECC--CEEEEEEEES
T ss_pred HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEE-------ECCCCceEEEEecCC
Confidence 4678999999999999999999999999999999999999999999999999999942 223444437889999
Q ss_pred CCeechhhhhhhhhhcCCCCCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHchHHH
Q 009549 431 GDFCGEELIAWAQQKVDNPSSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 431 G~~FGe~~l~~~~~~l~~~~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
|++||+.++ +.+.+ +.++++|.++|+++.+++++|.++++++|++.
T Consensus 78 g~~~G~~~~------~~~~~------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~ 123 (231)
T 3e97_A 78 PGVVGETAV------LAHQE------RSASVRALTPVRTLMLHREHFELILRRHPRVL 123 (231)
T ss_dssp SEEESTTTT------TCCCC------CCEEEEESSCEEEEEECHHHHHHHHHHCHHHH
T ss_pred CCEEeeHHH------hCCCC------ceEEEEECCcEEEEEEeHHHHHHHHHHCHHHH
Confidence 999999998 55543 78999999999999999999999999999987
No 25
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.59 E-value=5.3e-15 Score=131.31 Aligned_cols=83 Identities=17% Similarity=0.203 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHhhccCCCCCcCCChhhHHHHHHHHHHHHHHHHHHHhhhhhH--------------HHHHHHHHHHHHH
Q 009549 231 KFLHCLRWGLQNLSAFGQNLEASTDILDNIFAICMTNFGVVLFVFLIGKMQSD--------------TERSRSREQKLKE 296 (532)
Q Consensus 231 ~Yi~slYwa~~TmtTvGyGdi~p~t~~E~i~~i~~mi~G~~~~a~iig~i~~i--------------~~~~~~~~~~~~~ 296 (532)
.|..|+||+++|+|||||||++|.|..+++++++.+++|++++++.++.+++. .++..+..+++++
T Consensus 52 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~ 131 (148)
T 3vou_A 52 RPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEA 131 (148)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37889999999999999999999999999999999999999999999999872 1223445677889
Q ss_pred hhcCCCCCCCCHHHHHH
Q 009549 297 IKQGPSFGRLSSRLQQK 313 (532)
Q Consensus 297 i~~~m~~~~lp~~L~~r 313 (532)
+++++++++.|++|+.|
T Consensus 132 i~~~~~~~~~~~~L~~R 148 (148)
T 3vou_A 132 IEKKLAEHSRQGSLVPR 148 (148)
T ss_dssp HHHHHHHHTTC------
T ss_pred HHHHHHhcCCCcCCCCC
Confidence 99999999999998875
No 26
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.58 E-value=2.1e-14 Score=136.50 Aligned_cols=120 Identities=15% Similarity=0.227 Sum_probs=105.2
Q ss_pred HHHhhcCcccccCCHHHHHHHHhccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCC
Q 009549 351 TELLRNVKEFERWGEKELVDLSDCLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRY 430 (532)
Q Consensus 351 ~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~ 430 (532)
.+.++++|+|++++++.++.++..++...|.+|++|+++||.++.+|||.+|.|+++. ...+|+...+..+++
T Consensus 8 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~-------~~~~G~~~~~~~~~~ 80 (227)
T 3dkw_A 8 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYR-------LTPEGQEKILEVTNE 80 (227)
T ss_dssp HHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCB-------CCGGGCCBCCCEECT
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEE-------ECCCCCEEEEEEcCC
Confidence 4678999999999999999999999999999999999999999999999999999932 122344437888999
Q ss_pred CCeechhhhhhhhhhcCCCCCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHchHHH
Q 009549 431 GDFCGEELIAWAQQKVDNPSSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 431 G~~FGe~~l~~~~~~l~~~~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
|++||+.++ +.+.+ ++.++++|.++|+++.+++++|.++++++|++.
T Consensus 81 g~~~G~~~~------~~~~~-----~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~ 127 (227)
T 3dkw_A 81 RNTFAEAMM------FMDTP-----NYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLA 127 (227)
T ss_dssp TEEESCTTT------TTTCS-----BCSSCEEESSCCEEEEEESHHHHHHHSSCTHHH
T ss_pred CCEeeeHHh------cCCCC-----CCceEEEEcCcEEEEEEeHHHHHHHHHHCHHHH
Confidence 999999998 44331 267899999999999999999999999999998
No 27
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.57 E-value=9.8e-16 Score=133.52 Aligned_cols=125 Identities=14% Similarity=0.167 Sum_probs=105.0
Q ss_pred ChhHHHHHHHHHhHHHhhcCcccccCCHHHHHHHHhccceeEec-CCceEeecCCCCCeEEEEEeeEEEEeecccceeee
Q 009549 338 PQGLRSQVKGELGTELLRNVKEFERWGEKELVDLSDCLNPVFFT-DRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIAT 416 (532)
Q Consensus 338 p~~Lr~~i~~~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~-~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~ 416 (532)
||+.|.+--.....++++++++|.+++++.++.++..++...|. +|++|+++||.++.+|||.+|.|++ +.
T Consensus 2 ~p~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~--------~~ 73 (134)
T 2d93_A 2 SSGSSGDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEI--------SH 73 (134)
T ss_dssp CCSCCSTTHHHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEE--------EC
T ss_pred ChhhcCHHHHHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEE--------Ec
Confidence 44445444444456788999999999999999999999999999 9999999999999999999999999 42
Q ss_pred cCCCCCcceeecCCCCeechhhhhhhhhhcCCCCCCCCCCccceE-EEcceEEEEEeCHHHHHHHHHHchH
Q 009549 417 SSDGHNGKKDYLRYGDFCGEELIAWAQQKVDNPSSSNLPISTTTI-QALTEVEGFYLLASDLKNAFIEHRR 486 (532)
Q Consensus 417 ~~~~~~~~~~~l~~G~~FGe~~l~~~~~~l~~~~~~~~~~r~~tv-~a~t~~~l~~L~~~~f~~ll~~~P~ 486 (532)
.+|+ ...+++|++||+.++ +...+ +.+++ +|.++|+++.|++++|.++++++++
T Consensus 74 -~~g~---~~~l~~G~~fG~~~~------~~~~~------~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~ 128 (134)
T 2d93_A 74 -PDGK---VENLFMGNSFGITPT------LDKQY------MHGIVRTKVDDCQFVCIAQQDYWRILNHVEK 128 (134)
T ss_dssp -SSSC---EEEECTTCEESCCSS------SCCEE------CCSEEEESSSSEEEEEEEHHHHHHHSSCCSS
T ss_pred -CCCc---EEEecCCCccChhHh------cCCCc------ceeEEEEEecceEEEEEeHHHHHHHHHHHHh
Confidence 2332 367899999999998 55443 66788 9999999999999999999988764
No 28
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.57 E-value=3.5e-15 Score=130.35 Aligned_cols=89 Identities=15% Similarity=0.239 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHhhccCCCCCcCCChhhHHHHHHHHHHHHHHHHHHHhhhhhHHH---HHHHHHHHHHHhhc-CCCCCCC
Q 009549 231 KFLHCLRWGLQNLSAFGQNLEASTDILDNIFAICMTNFGVVLFVFLIGKMQSDTE---RSRSREQKLKEIKQ-GPSFGRL 306 (532)
Q Consensus 231 ~Yi~slYwa~~TmtTvGyGdi~p~t~~E~i~~i~~mi~G~~~~a~iig~i~~i~~---~~~~~~~~~~~i~~-~m~~~~l 306 (532)
.|..|+||+++|||||||||++|.|..|+++++++|++|++++|+++|.+++... ..++.+++.+.+.+ ..+..++
T Consensus 43 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 122 (137)
T 4h33_A 43 NYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKKPTNSSTQRANKITQLISETPDL 122 (137)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC--------------------
T ss_pred CHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 3788999999999999999999999999999999999999999999999998711 11111222222322 2334456
Q ss_pred CHHHHHHHHHHHH
Q 009549 307 SSRLQQKIKNYKQ 319 (532)
Q Consensus 307 p~~L~~rv~~y~~ 319 (532)
+++.+..++++++
T Consensus 123 ~~~~i~~l~~~l~ 135 (137)
T 4h33_A 123 TKEEIAVVEQFLT 135 (137)
T ss_dssp -------------
T ss_pred cHHHHHHHHHHHh
Confidence 6666666665543
No 29
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.57 E-value=3e-14 Score=136.12 Aligned_cols=115 Identities=15% Similarity=0.203 Sum_probs=99.9
Q ss_pred hcCcccccCCHHHHHHHHhccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCee
Q 009549 355 RNVKEFERWGEKELVDLSDCLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFC 434 (532)
Q Consensus 355 ~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~F 434 (532)
.++|+|.+++++.++.++..++...|.||++|+++||.++.+|||.+|.|+++. ...+|+...+..+++|++|
T Consensus 13 ~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~-------~~~~g~~~~~~~~~~G~~~ 85 (232)
T 2gau_A 13 LLRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILR-------EGVYGRFHISRIVKPGQFF 85 (232)
T ss_dssp GSHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC------------CCCEEEEECTTCEE
T ss_pred cccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEE-------ECCCCCEEEEEEeCCCCEe
Confidence 367899999999999999999999999999999999999999999999999942 1223444378999999999
Q ss_pred chhhhhhhhhhcCCCCCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHchHHH
Q 009549 435 GEELIAWAQQKVDNPSSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 435 Ge~~l~~~~~~l~~~~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
|+.++ +...+ ++++++|.++|+++.+++++|.++++++|++.
T Consensus 86 G~~~~------~~~~~------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~ 127 (232)
T 2gau_A 86 GMRPY------FAEET------CSSTAIAVENSKVLAIPVEAIEALLKGNTSFC 127 (232)
T ss_dssp SHHHH------HHTSC------CSSEEEESSCEEEEEEEHHHHHHHHHHCHHHH
T ss_pred eeehh------hCCCC------cceEEEEecceEEEEEEHHHHHHHHHHCHHHH
Confidence 99998 44332 68899999999999999999999999999997
No 30
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.56 E-value=5e-14 Score=134.18 Aligned_cols=120 Identities=19% Similarity=0.256 Sum_probs=95.1
Q ss_pred HHHhhcCcccccCCHHHHHHHHhccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCC
Q 009549 351 TELLRNVKEFERWGEKELVDLSDCLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRY 430 (532)
Q Consensus 351 ~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~ 430 (532)
...+++.++|.+++++.++.++..++...|.+|++|+++||.++.+|||.+|.|+++. ...+|+...+..+++
T Consensus 10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~-------~~~~G~~~~~~~~~~ 82 (230)
T 3iwz_A 10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIA-------EEDDDRELVLGYFGS 82 (230)
T ss_dssp ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEE-------ECTTSCEEEEEEECT
T ss_pred hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEE-------ECCCCCEEEEEEecC
Confidence 4577899999999999999999999999999999999999999999999999999942 223444437889999
Q ss_pred CCeechhhhhhhhhhcCCCCCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHc-----hHHH
Q 009549 431 GDFCGEELIAWAQQKVDNPSSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEH-----RRYQ 488 (532)
Q Consensus 431 G~~FGe~~l~~~~~~l~~~~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~-----P~~~ 488 (532)
|++||+.++ +.... +++++++|.++|+++.+++++|.++++++ |++.
T Consensus 83 g~~~G~~~~------~~~~~-----~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~~~ 134 (230)
T 3iwz_A 83 GEFVGEMGL------FIESD-----TREVILRTRTQCELAEISYERLQQLFQTSLSPDAPRIL 134 (230)
T ss_dssp TCEESCGGG------TSCCS-----BCCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHHHH
T ss_pred CCEEEehhh------hcCCC-----CceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcHHH
Confidence 999999998 54431 26889999999999999999999999999 9987
No 31
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.55 E-value=2.9e-14 Score=144.03 Aligned_cols=118 Identities=15% Similarity=0.221 Sum_probs=105.3
Q ss_pred hHHHhhcCcccccCCHHHHHHHHhccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecC
Q 009549 350 GTELLRNVKEFERWGEKELVDLSDCLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLR 429 (532)
Q Consensus 350 ~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~ 429 (532)
..+.++++|+|++++++.+..++..++...|.+|++|+++||.++.+|||.+|.|+++. ...+|+. .+..++
T Consensus 11 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-------~~~~g~~-~~~~~~ 82 (333)
T 4ava_A 11 RVEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSH-------VGDDGVA-IIARAL 82 (333)
T ss_dssp CHHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEE-------ECTTCCE-EEEEEC
T ss_pred hHHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEE-------ECCCCcE-EEEEec
Confidence 35788999999999999999999999999999999999999999999999999999942 2234444 788999
Q ss_pred CCCeechhhhhhhhhhcCCCCCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHchHHH
Q 009549 430 YGDFCGEELIAWAQQKVDNPSSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 430 ~G~~FGe~~l~~~~~~l~~~~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
+|++|||.++ +...+ |+++++|.++|+++.|++++|.+++ ++|++.
T Consensus 83 ~G~~fGe~~l------~~~~~------~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~~~ 128 (333)
T 4ava_A 83 PGMIVGEIAL------LRDSP------RSATVTTIEPLTGWTGGRGAFATMV-HIPGVG 128 (333)
T ss_dssp TTCEESHHHH------HHTCB------CSSEEEESSCEEEEEECHHHHHHHH-HSTTHH
T ss_pred CCCEeeHHHh------cCCCC------ceEEEEEecCEEEEEEcHHHHHHHH-hChHHH
Confidence 9999999998 44443 7899999999999999999999999 999997
No 32
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.55 E-value=4.6e-14 Score=135.00 Aligned_cols=120 Identities=12% Similarity=0.177 Sum_probs=105.2
Q ss_pred HHHhhcCcccccCCHHHHHHHHhc--cceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeec
Q 009549 351 TELLRNVKEFERWGEKELVDLSDC--LNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYL 428 (532)
Q Consensus 351 ~~~l~~i~~F~~~s~~~l~~l~~~--l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l 428 (532)
...+.++|+|.+++++.++.++.. ++...|.+|++|+++||.++.+|||.+|.|+++. ...+|+...+..+
T Consensus 17 ~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~-------~~~~G~~~~l~~~ 89 (232)
T 1zyb_A 17 FDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVT-------NAKENIYTVIEQI 89 (232)
T ss_dssp HTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEE-------ECGGGSCEEEEEE
T ss_pred HHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEE-------ECCCCCEEEEEEc
Confidence 456889999999999999999998 9999999999999999999999999999999942 2233444378899
Q ss_pred CCCCeechhhhhhhhhhcCCCCCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHchHHH
Q 009549 429 RYGDFCGEELIAWAQQKVDNPSSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 429 ~~G~~FGe~~l~~~~~~l~~~~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
++|++||+.++ +...+ ++.++++|.++|+++.+++++|.++++++|++.
T Consensus 90 ~~G~~fG~~~~------~~~~~-----~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~ 138 (232)
T 1zyb_A 90 EAPYLIEPQSL------FGMNT-----NYASSYVAHTEVHTVCISKAFVLSDLFRYDIFR 138 (232)
T ss_dssp ESSEEECGGGG------SSSCC-----BCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHH
T ss_pred cCCCeeeehHH------hCCCC-----CCceEEEEccceEEEEEEHHHHHHHhccCHHHH
Confidence 99999999998 54431 268899999999999999999999999999997
No 33
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.3e-14 Score=139.57 Aligned_cols=115 Identities=17% Similarity=0.159 Sum_probs=103.2
Q ss_pred hHHHhhcCcccccCCHHHHHHHHhccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecC
Q 009549 350 GTELLRNVKEFERWGEKELVDLSDCLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLR 429 (532)
Q Consensus 350 ~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~ 429 (532)
..+.++++++|++++++.++.++..++...|.+|++|+++||.++++|+|.+|.|+++ . +++ .+..++
T Consensus 5 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~--------~--~~~--~~~~~~ 72 (246)
T 3of1_A 5 LEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFY--------V--NDN--KVNSSG 72 (246)
T ss_dssp HHHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEE--------S--TTS--CCEEEC
T ss_pred HHHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEE--------E--CCE--EEEecC
Confidence 3568899999999999999999999999999999999999999999999999999993 2 222 478899
Q ss_pred CCCeechhhhhhhhhhcCCCCCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHchHHH
Q 009549 430 YGDFCGEELIAWAQQKVDNPSSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 430 ~G~~FGe~~l~~~~~~l~~~~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
+|++|||.++ +...+ |+++++|.++|+++.|++++|.+++..+|..+
T Consensus 73 ~g~~fGe~~l------~~~~~------~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~ 119 (246)
T 3of1_A 73 PGSSFGELAL------MYNSP------RAATVVATSDCLLWALDRLTFRKILLGSSFKK 119 (246)
T ss_dssp TTCEECHHHH------HHTCC------CSSEEEESSCEEEEEEEHHHHHHTTTTTTSHH
T ss_pred CCCeeehhHH------hcCCC------CCcEEEECCCeEEEEEEhHHHHHHHHHhHHHH
Confidence 9999999998 44433 78999999999999999999999999999765
No 34
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.54 E-value=2.6e-14 Score=142.06 Aligned_cols=123 Identities=20% Similarity=0.245 Sum_probs=107.8
Q ss_pred HHhHHHhhcCcccccCCHHHHHHHHhccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceee
Q 009549 348 ELGTELLRNVKEFERWGEKELVDLSDCLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDY 427 (532)
Q Consensus 348 ~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~ 427 (532)
..+...++++++|++++++.+..++..++...|.+|++|+++||.++.+|+|.+|.|+++... ..+|+...+..
T Consensus 153 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~------~~~g~~~~~~~ 226 (299)
T 3shr_A 153 TEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTRED------SPNEDPVFLRT 226 (299)
T ss_dssp HHHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECC------SSSCCCEEEEE
T ss_pred HHHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEec------CCCCcceEEEE
Confidence 345678899999999999999999999999999999999999999999999999999994211 02343337889
Q ss_pred cCCCCeechhhhhhhhhhcCCCCCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHchHHH
Q 009549 428 LRYGDFCGEELIAWAQQKVDNPSSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 428 l~~G~~FGe~~l~~~~~~l~~~~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
+++|++|||.++ +...+ |+++++|.++|+++.|++++|.+++..+|++.
T Consensus 227 l~~G~~fGe~~l------l~~~~------~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~ 275 (299)
T 3shr_A 227 LGKGDWFGEKAL------QGEDV------RTANVIAAEAVTCLVIDRDSFKHLIGGLDDVS 275 (299)
T ss_dssp EETTCEECGGGG------SSSEE------CSSEEEESSSEEEEEEEHHHHHHHHTTCCCCC
T ss_pred cCCCCEeChHHH------hCCCC------cceEEEECCCEEEEEEeHHHHHHHHccHHHHH
Confidence 999999999998 65543 78999999999999999999999999999986
No 35
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.53 E-value=3.4e-14 Score=136.64 Aligned_cols=117 Identities=17% Similarity=0.239 Sum_probs=104.2
Q ss_pred HhHHHhhcCcccccCCHHHHHHHHhccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeec
Q 009549 349 LGTELLRNVKEFERWGEKELVDLSDCLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYL 428 (532)
Q Consensus 349 ~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l 428 (532)
++..+++++++|+++++..+..++..++...|.+|++|+++||.++.+|+|.+|.|+++ ..+++ .+..+
T Consensus 122 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~--------~~~~~---~~~~l 190 (246)
T 3of1_A 122 MYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVS--------KKGQG---VINKL 190 (246)
T ss_dssp HSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEE--------ETTTE---EEEEE
T ss_pred HHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEE--------EcCCc---eEEEc
Confidence 44567789999999999999999999999999999999999999999999999999993 32222 57899
Q ss_pred CCCCeechhhhhhhhhhcCCCCCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHchHHH
Q 009549 429 RYGDFCGEELIAWAQQKVDNPSSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 429 ~~G~~FGe~~l~~~~~~l~~~~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
++|++|||.++ +...+ |+++++|.++|+++.|++++|.+++..+|++.
T Consensus 191 ~~g~~fGe~~~------~~~~~------~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~~~ 238 (246)
T 3of1_A 191 KDHDYFGEVAL------LNDLP------RQATVTATKRTKVATLGKSGFQRLLGPAVDVL 238 (246)
T ss_dssp ETTCEECHHHH------HHTCB------CSSEEEESSCEEEEEEEHHHHHHHCTTHHHHH
T ss_pred CCCCcccHHHH------hCCCC------cccEEEECCCEEEEEEeHHHHHHHhccHHHHH
Confidence 99999999998 44443 78999999999999999999999999999885
No 36
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.53 E-value=1.7e-14 Score=150.33 Aligned_cols=123 Identities=13% Similarity=0.150 Sum_probs=109.4
Q ss_pred HHHHhHHHhhcCcccccCCHHHHHHHHhccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcce
Q 009549 346 KGELGTELLRNVKEFERWGEKELVDLSDCLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKK 425 (532)
Q Consensus 346 ~~~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~ 425 (532)
..+...+.++++++|++++++.+..++..++...|.+|++|+++||.++.+|+|.+|.|+++ ...+|+...+
T Consensus 139 ~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~--------~~~~G~~~~v 210 (416)
T 3tnp_B 139 QRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIY--------VKCDGVGRCV 210 (416)
T ss_dssp HHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEE--------EECSSCEEEE
T ss_pred HHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEE--------EecCCCEEEE
Confidence 34455788999999999999999999999999999999999999999999999999999994 3334443378
Q ss_pred eecCCCCeechhhhhhhhhhcCCCCCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHchHHH
Q 009549 426 DYLRYGDFCGEELIAWAQQKVDNPSSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 426 ~~l~~G~~FGe~~l~~~~~~l~~~~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
..+.+|++|||.++ +...+ |.++++|.++|+++.|++++|.+++..+|...
T Consensus 211 ~~l~~G~~fGe~al------l~~~p------r~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~ 261 (416)
T 3tnp_B 211 GNYDNRGSFGELAL------MYNTP------KAATITATSPGALWGLDRVTFRRIIVKNNAKK 261 (416)
T ss_dssp EEEESCCEECGGGG------TSCCC------CSSEEEESSSEEEEEEEHHHHHHHHHHHHHHH
T ss_pred EEecCCCEEeeHHH------hcCCC------cccEEEEccCeEEEEEeehhhhhhhhcchhHH
Confidence 89999999999999 65553 89999999999999999999999999999886
No 37
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.53 E-value=1e-13 Score=137.07 Aligned_cols=121 Identities=23% Similarity=0.297 Sum_probs=106.0
Q ss_pred HhHHHhhcCcccccCCHHHHHHHHhccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCC-cceee
Q 009549 349 LGTELLRNVKEFERWGEKELVDLSDCLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHN-GKKDY 427 (532)
Q Consensus 349 ~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~-~~~~~ 427 (532)
+...+++++++|.++++..+..++..++...|.+|++|+++||.++.+|+|.+|.|++.. ...+++. ..+..
T Consensus 154 ~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~-------~~~~~~~~~~~~~ 226 (291)
T 2qcs_B 154 MYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQ-------RRSENEEFVEVGR 226 (291)
T ss_dssp HHHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEE-------ECSTTSCEEEEEE
T ss_pred HHHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEE-------ecCCCCccEEEEE
Confidence 445677899999999999999999999999999999999999999999999999999942 1223322 27899
Q ss_pred cCCCCeechhhhhhhhhhcCCCCCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHchHHH
Q 009549 428 LRYGDFCGEELIAWAQQKVDNPSSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 428 l~~G~~FGe~~l~~~~~~l~~~~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
+++|++|||.++ +...+ |+++++|.++|+++.|++++|.+++..+|++.
T Consensus 227 l~~G~~fGe~~l------l~~~~------~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~ 275 (291)
T 2qcs_B 227 LGPSDYFGEIAL------LMNRP------KAATVVARGPLKCVKLDRPRFERVLGPCSDIL 275 (291)
T ss_dssp ECTTCEECSGGG------TCCCC------CSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHH
T ss_pred eCCCCEecHHHH------cCCCC------cceEEEECCcEEEEEEcHHHHHHHhccHHHHH
Confidence 999999999998 65543 78999999999999999999999999999985
No 38
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.52 E-value=6.7e-14 Score=138.42 Aligned_cols=117 Identities=15% Similarity=0.205 Sum_probs=105.9
Q ss_pred HHhHHHhhcCcccccCCHHHHHHHHhccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceee
Q 009549 348 ELGTELLRNVKEFERWGEKELVDLSDCLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDY 427 (532)
Q Consensus 348 ~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~ 427 (532)
+...+.++++++|++++++.+..++..++...|.+|++|+++||.++.+|+|.+|.|.+ +. +|+ .+..
T Consensus 35 ~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~--------~~--~g~--~~~~ 102 (291)
T 2qcs_B 35 AALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDV--------YV--NNE--WATS 102 (291)
T ss_dssp HHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEE--------EE--TTE--EEEE
T ss_pred HHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEE--------EE--CCe--EEEE
Confidence 44577899999999999999999999999999999999999999999999999999999 32 232 6889
Q ss_pred cCCCCeechhhhhhhhhhcCCCCCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHchHHH
Q 009549 428 LRYGDFCGEELIAWAQQKVDNPSSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 428 l~~G~~FGe~~l~~~~~~l~~~~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
+++|++|||.++ +.+.+ |.++++|.++|+++.|++++|.+++..+|.+.
T Consensus 103 l~~G~~fGe~~l------~~~~~------~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~ 151 (291)
T 2qcs_B 103 VGEGGSFGELAL------IYGTP------RAATVKAKTNVKLWGIDRDSYRRILMGSTLRK 151 (291)
T ss_dssp ECTTCEECGGGG------TCCCB------CSSEEEESSCEEEEEEEHHHHHHHHHHHHHHH
T ss_pred cCCCCccchHHH------hcCCC------CceEEEECCCEEEEEEEhHHHHHHHhhhHHHH
Confidence 999999999998 55543 78999999999999999999999999999886
No 39
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.51 E-value=8.6e-14 Score=119.06 Aligned_cols=55 Identities=9% Similarity=0.185 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHhhccCCCCCcCCChhhHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 009549 230 QKFLHCLRWGLQNLSAFGQNLEASTDILDNIFAICMTNFGVVLFVFLIGKMQSDT 284 (532)
Q Consensus 230 ~~Yi~slYwa~~TmtTvGyGdi~p~t~~E~i~~i~~mi~G~~~~a~iig~i~~i~ 284 (532)
..|..|+||+++|+|||||||++|.|..+++++++.+++|..++++.+|.+++..
T Consensus 60 ~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~ 114 (122)
T 2ih3_C 60 ITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWF 114 (122)
T ss_dssp CSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588999999999999999999999999999999999999999999999999883
No 40
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.51 E-value=2.6e-13 Score=127.25 Aligned_cols=113 Identities=12% Similarity=0.157 Sum_probs=95.1
Q ss_pred cccccCCHHHHHHHHhccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeechh
Q 009549 358 KEFERWGEKELVDLSDCLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCGEE 437 (532)
Q Consensus 358 ~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FGe~ 437 (532)
++++.++++.++.++..++...|.+|++|+++|+.++.+|||.+|.|+++. ...+|+...+..+++|++||+.
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~-------~~~~g~~~~~~~~~~g~~~G~~ 74 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLI-------KDEEGKEMILSYLNQGDFIGEL 74 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEE-------ECTTCCEEEEEEEETTCEESCT
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEE-------ECCCCCEEEEEEcCCCCEeeeH
Confidence 356678999999999999999999999999999999999999999999942 2234444378899999999999
Q ss_pred hhhhhhhhcCCCCCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHchHHH
Q 009549 438 LIAWAQQKVDNPSSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 438 ~l~~~~~~l~~~~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
++ +.... ++.++++|.++|+++.+++++|.++++++|++.
T Consensus 75 ~~------~~~~~-----~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~ 114 (210)
T 3ryp_A 75 GL------FEEGQ-----ERSAWVRAKTACEVAEISYKKFRQLIQVNPDIL 114 (210)
T ss_dssp TT------TSTTC-----BCSSEEEESSCEEEEEEEHHHHHHHHHHCTHHH
T ss_pred HH------hcCCC-----CceEEEEECCcEEEEEEcHHHHHHHHHHChHHH
Confidence 98 54431 268899999999999999999999999999997
No 41
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.49 E-value=4.2e-13 Score=125.53 Aligned_cols=111 Identities=19% Similarity=0.234 Sum_probs=93.0
Q ss_pred CCHHHHHHHHhccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeechhhhhhh
Q 009549 363 WGEKELVDLSDCLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCGEELIAWA 442 (532)
Q Consensus 363 ~s~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~l~~~ 442 (532)
++++.++.++..++...|.+|++|+++||.++++|||.+|.|+++. ...+|+...+..+++|++||+.++
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~-------~~~~G~~~~~~~~~~g~~~G~~~~--- 70 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILI-------EDDDGREMIIGYLNSGDFFGELGL--- 70 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEE-------ECTTSCEEEEEEEETTCEESCTTT---
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEE-------ECCCCCEEEEEEcCCCCCcccHHH---
Confidence 4788999999999999999999999999999999999999999942 223344437889999999999998
Q ss_pred hhhcCCCCCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHchHHH
Q 009549 443 QQKVDNPSSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 443 ~~~l~~~~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
+.... ...+++++++|.++|+++.+++++|.++++++|++.
T Consensus 71 ---~~~~~--~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~ 111 (207)
T 2oz6_A 71 ---FEKEG--SEQERSAWVRAKVECEVAEISYAKFRELSQQDSEIL 111 (207)
T ss_dssp ---CC-------CBCCSEEEESSCEEEEEEEHHHHHHHHHHCHHHH
T ss_pred ---hcCCC--CCCCcceEEEECCcEEEEEECHHHHHHHHHHCHHHH
Confidence 54430 000268899999999999999999999999999997
No 42
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.47 E-value=8.4e-14 Score=143.53 Aligned_cols=117 Identities=15% Similarity=0.196 Sum_probs=105.8
Q ss_pred HHhHHHhhcCcccccCCHHHHHHHHhccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceee
Q 009549 348 ELGTELLRNVKEFERWGEKELVDLSDCLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDY 427 (532)
Q Consensus 348 ~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~ 427 (532)
+...+.++++++|++++++.+..++..++...|.+|++|+++||.++.+|+|.+|.|+++ . +++ .+..
T Consensus 126 ~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~--------~--~~~--~v~~ 193 (381)
T 4din_B 126 TALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVY--------V--NGE--WVTN 193 (381)
T ss_dssp HHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEE--------E--TTE--EEEE
T ss_pred HHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEE--------E--CCe--Eeee
Confidence 445678999999999999999999999999999999999999999999999999999993 2 222 5788
Q ss_pred cCCCCeechhhhhhhhhhcCCCCCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHchHHH
Q 009549 428 LRYGDFCGEELIAWAQQKVDNPSSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 428 l~~G~~FGe~~l~~~~~~l~~~~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
+++|++|||.++ +.+.+ |.++++|.++|+++.|++++|.+++..+|...
T Consensus 194 l~~G~~fGe~al------l~~~~------r~atv~A~~~~~l~~i~~~~f~~ll~~~~~~~ 242 (381)
T 4din_B 194 ISEGGSFGELAL------IYGTP------RAATVKAKTDLKLWGIDRDSYRRILMGSTLRK 242 (381)
T ss_dssp EESSCCBCGGGG------TSCCB------CSSEEEESSSCEEEEEEHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEchHH------hcCCC------cceEEEECCCEEEEEEchHHHHHhhhhhhHHH
Confidence 999999999999 55543 78999999999999999999999999999886
No 43
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.47 E-value=2.4e-13 Score=128.74 Aligned_cols=110 Identities=13% Similarity=0.186 Sum_probs=99.1
Q ss_pred HHhhcCcccccCCHHHHHHHHhccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCC
Q 009549 352 ELLRNVKEFERWGEKELVDLSDCLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYG 431 (532)
Q Consensus 352 ~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G 431 (532)
.+++++|+|.+++++.+..++..++...|.+|++|+++||.++.+|||.+|.|++ +...+|+...+..+++|
T Consensus 4 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~--------~~~~~G~~~~~~~~~~G 75 (220)
T 2fmy_A 4 MRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRV--------YLAYEDKEFTLAILEAG 75 (220)
T ss_dssp TCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEE--------EEECSSCEEEEEEEETT
T ss_pred hhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEE--------EECCCCCEEEEEEcCCC
Confidence 4678999999999999999999999999999999999999999999999999999 43344544378899999
Q ss_pred CeechhhhhhhhhhcCCCCCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHchHHH
Q 009549 432 DFCGEELIAWAQQKVDNPSSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 432 ~~FGe~~l~~~~~~l~~~~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
++||+ - ++++++|.++|+++.+++++|.++++++|++.
T Consensus 76 ~~~G~--~-----------------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~ 113 (220)
T 2fmy_A 76 DIFCT--H-----------------TRAFIQAMEDTTILYTDIRNFQNIVVEFPAFS 113 (220)
T ss_dssp CEEES--C-----------------SSSEEEESSSEEEEEEEHHHHHHHHHHCTHHH
T ss_pred CEeCC--c-----------------cceEEEEcCcEEEEEEeHHHHHHHHHHCHHHH
Confidence 99995 1 57799999999999999999999999999987
No 44
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.47 E-value=1.7e-13 Score=120.36 Aligned_cols=54 Identities=11% Similarity=0.259 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHhhccCCCCCcCCChhhHHHHHHHHHHHHHHHHHHHhhhhhH
Q 009549 230 QKFLHCLRWGLQNLSAFGQNLEASTDILDNIFAICMTNFGVVLFVFLIGKMQSD 283 (532)
Q Consensus 230 ~~Yi~slYwa~~TmtTvGyGdi~p~t~~E~i~~i~~mi~G~~~~a~iig~i~~i 283 (532)
..|..|+||+++|+|||||||++|.|..+++++++.+++|+++++++++.+++.
T Consensus 39 ~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~ 92 (139)
T 3eff_K 39 ITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATW 92 (139)
T ss_dssp CCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358899999999999999999999999999999999999999999999999987
No 45
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.46 E-value=1.9e-13 Score=140.93 Aligned_cols=121 Identities=21% Similarity=0.259 Sum_probs=106.9
Q ss_pred HHhHHHhhcCcccccCCHHHHHHHHhccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecC-CCCCc-ce
Q 009549 348 ELGTELLRNVKEFERWGEKELVDLSDCLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSS-DGHNG-KK 425 (532)
Q Consensus 348 ~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~-~~~~~-~~ 425 (532)
.++..+++++++|.++++..+..++..++...|.+|++|+++||.++.+|||.+|.|+++ ..+ +++.. .+
T Consensus 244 ~~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~--------~~~~~~~~~~~v 315 (381)
T 4din_B 244 KMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVL--------QRRSPNEEYVEV 315 (381)
T ss_dssp HHHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEE--------CCSSSSSCCCEE
T ss_pred HHHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEE--------EecCCCCceEEE
Confidence 455678899999999999999999999999999999999999999999999999999994 222 22222 68
Q ss_pred eecCCCCeechhhhhhhhhhcCCCCCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHchHHH
Q 009549 426 DYLRYGDFCGEELIAWAQQKVDNPSSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 426 ~~l~~G~~FGe~~l~~~~~~l~~~~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
..+++|++|||.++ +...+ |+++++|.++|+++.|++++|.+++..+|++.
T Consensus 316 ~~l~~Gd~fGe~al------l~~~~------r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~ 366 (381)
T 4din_B 316 GRLGPSDYFGEIAL------LLNRP------RAATVVARGPLKCVKLDRPRFERVLGPCSEIL 366 (381)
T ss_dssp EEECTTCEECTTGG------GSCCB------CSSEEEESSCBEEEEEEHHHHHHHHCCHHHHH
T ss_pred EEeCCCCEechHHH------hCCCC------ceeEEEEcCCEEEEEEeHHHHHHHHhhhHHHH
Confidence 89999999999999 65553 88999999999999999999999999999885
No 46
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.45 E-value=1e-12 Score=128.07 Aligned_cols=110 Identities=13% Similarity=0.191 Sum_probs=93.2
Q ss_pred ccCCHHHHHHHHhccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeechhhhh
Q 009549 361 ERWGEKELVDLSDCLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCGEELIA 440 (532)
Q Consensus 361 ~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~l~ 440 (532)
..++++.++.++..++...|.+|++|+++||.++.+|||.+|.|+++. ...+|+...+..+++|++||+.++
T Consensus 55 ~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~-------~~~~G~e~~~~~~~~G~~~Ge~~~- 126 (260)
T 3kcc_A 55 KPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLI-------KDEEGKEMILSYLNQGDFIGELGL- 126 (260)
T ss_dssp ----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEE-------ECTTCCEEEEEEEETTCEESCTTT-
T ss_pred CCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEE-------ECCCCCEEEEEEcCCCCEEeehHH-
Confidence 457999999999999999999999999999999999999999999942 223444437889999999999998
Q ss_pred hhhhhcCCCCCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHchHHH
Q 009549 441 WAQQKVDNPSSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 441 ~~~~~l~~~~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
+.... +++++++|.++|+++.|++++|.++++++|++.
T Consensus 127 -----~~~~~-----~~~~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~ 164 (260)
T 3kcc_A 127 -----FEEGQ-----ERSAWVRAKTACEVAEISYKKFRQLIQVNPDIL 164 (260)
T ss_dssp -----TSTTC-----BCCSEEEESSCEEEEEEEHHHHHHHHHHCTHHH
T ss_pred -----hCCCC-----CCceEEEECCCeEEEEEcHHHHHHHHHHCHHHH
Confidence 54431 268899999999999999999999999999997
No 47
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.44 E-value=4.1e-13 Score=126.64 Aligned_cols=114 Identities=17% Similarity=0.249 Sum_probs=91.7
Q ss_pred CcccccCCHHHHHHHHhccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeech
Q 009549 357 VKEFERWGEKELVDLSDCLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCGE 436 (532)
Q Consensus 357 i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FGe 436 (532)
-|.|+..++.....+...++...|.+|++|+++||.++.+|||.+|.|+++. ...+|+...+..+++|++||+
T Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~-------~~~~G~~~~~~~~~~G~~~G~ 76 (213)
T 1o5l_A 4 DKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEH-------VSENGKTLEIDEIKPVQIIAS 76 (213)
T ss_dssp ---------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEE-------ECTTSCEEEEEEECSSEESSG
T ss_pred cccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEE-------ECCCCCEEEEEEecCCCEeee
Confidence 4678888889999999999999999999999999999999999999999942 223444437889999999999
Q ss_pred hhhhhhhhhcCCCCCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHchHHH
Q 009549 437 ELIAWAQQKVDNPSSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 437 ~~l~~~~~~l~~~~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
.++ +... .++.++++|.++|+++.+++++|.++++++|++.
T Consensus 77 ~~~------~~~~-----~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~ 117 (213)
T 1o5l_A 77 GFI------FSSE-----PRFPVNVVAGENSKILSIPKEVFLDLLMKDRELL 117 (213)
T ss_dssp GGT------TSSS-----CBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHH
T ss_pred HHH------hcCC-----CCceEEEEEccceEEEEEeHHHHHHHHHHCHHHH
Confidence 998 4432 1268899999999999999999999999999996
No 48
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.44 E-value=4.7e-13 Score=141.67 Aligned_cols=133 Identities=22% Similarity=0.211 Sum_probs=115.6
Q ss_pred hCChhHHHHHHHHHhHHHhhcCcccccCCHHHHHHHHhccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceee
Q 009549 336 NLPQGLRSQVKGELGTELLRNVKEFERWGEKELVDLSDCLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIA 415 (532)
Q Consensus 336 ~Lp~~Lr~~i~~~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~ 415 (532)
..|+..|.+-..+...+.++++++|++++++.+..++..++...|.+|++|+++||.++.+|+|.+|.|+++.
T Consensus 26 ~~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~------- 98 (469)
T 1o7f_A 26 DKRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKV------- 98 (469)
T ss_dssp TSCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEE-------
T ss_pred cCChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEE-------
Confidence 3578888887788888999999999999999999999999999999999999999999999999999999942
Q ss_pred ecCCCCC--cceeecCCCCeechhhhhhhhhhcCCCCCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHchHHH
Q 009549 416 TSSDGHN--GKKDYLRYGDFCGEELIAWAQQKVDNPSSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 416 ~~~~~~~--~~~~~l~~G~~FGe~~l~~~~~~l~~~~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
...+|+. ..+..+++|++|||.++ .. . +++++++|.++|+++.|++++|.++++++|++.
T Consensus 99 ~~~~g~~~~~~~~~~~~G~~fGe~~l-~~------~------~~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~~~ 160 (469)
T 1o7f_A 99 SETSSHQDAVTICTLGIGTAFGESIL-DN------T------PRHATIVTRESSELLRIEQEDFKALWEKYRQYM 160 (469)
T ss_dssp CSSSCGGGCEEEEEECTTCEECGGGG-GT------C------BCSSEEEESSSEEEEEEEHHHHHHHHHHHGGGT
T ss_pred ecCCCCCcceEEEEccCCCCcchhhh-CC------C------CccceEEEccceeEEEEcHHHHHHHHHhCHHHH
Confidence 2233431 27889999999999883 22 2 278999999999999999999999999999865
No 49
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.43 E-value=3.1e-13 Score=140.86 Aligned_cols=127 Identities=13% Similarity=0.179 Sum_probs=105.0
Q ss_pred HhHHHhhcCcccccCCHHHHHHHHhccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeec
Q 009549 349 LGTELLRNVKEFERWGEKELVDLSDCLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYL 428 (532)
Q Consensus 349 ~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l 428 (532)
++..+++++++|..+++..+..++..++...|.+|++|+++||.++.+|||.+|.|+++....... ...+|+...+..+
T Consensus 264 ~~~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~-~~~~g~~~~l~~l 342 (416)
T 3tnp_B 264 MYESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKS-EVEENGAVEIARC 342 (416)
T ss_dssp SSSSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC-------------CEEEEE
T ss_pred HHHHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcc-cccCCceeEEEEe
Confidence 445678889999999999999999999999999999999999999999999999999943211000 0001333378999
Q ss_pred CCCCeechhhhhhhhhhcCCCCCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHchHHH
Q 009549 429 RYGDFCGEELIAWAQQKVDNPSSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 429 ~~G~~FGe~~l~~~~~~l~~~~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
++|++|||.++ +...+ |+++++|.++|+++.|++++|.+++..+|++.
T Consensus 343 ~~G~~fGE~al------l~~~~------r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~i~ 390 (416)
T 3tnp_B 343 FRGQYFGELAL------VTNKP------RAASAHAIGTVKCLAMDVQAFERLLGPCMEIM 390 (416)
T ss_dssp CTTCEESGGGG------TCCSC------CSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHH
T ss_pred CCCCEecHHHH------hCCCC------ceeEEEEcCCeEEEEEEHHHHHHHhcchHHHH
Confidence 99999999999 65543 89999999999999999999999999999986
No 50
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.43 E-value=3.9e-13 Score=127.48 Aligned_cols=109 Identities=9% Similarity=0.044 Sum_probs=96.9
Q ss_pred HhhcCcccccCCHHHHHHHHhccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCC
Q 009549 353 LLRNVKEFERWGEKELVDLSDCLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGD 432 (532)
Q Consensus 353 ~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~ 432 (532)
+++++|+|.+++++.++.++..++...|.+|++|+++|+.++++|+|.+|.|++ +...+|+...+..+++|+
T Consensus 1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~--------~~~~~G~~~~~~~~~~G~ 72 (222)
T 1ft9_A 1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRV--------YLVGEEREISLFYLTSGD 72 (222)
T ss_dssp -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEE--------EEEETTEEEEEEEEETTC
T ss_pred CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEE--------EECCCCCEEEEEEcCCCC
Confidence 367899999999999999999999999999999999999999999999999999 423344443788999999
Q ss_pred eechhhhhhhhhhcCCCCCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHchHHH
Q 009549 433 FCGEELIAWAQQKVDNPSSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 433 ~FGe~~l~~~~~~l~~~~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
+|| . +++++++|.++|+++.+++++|.++++++|++.
T Consensus 73 ~fG--~-----------------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~ 109 (222)
T 1ft9_A 73 MFC--M-----------------HSGCLVEATERTEVRFADIRTFEQKLQTCPSMA 109 (222)
T ss_dssp EEE--S-----------------CSSCEEEESSCEEEEEECHHHHHHHHHHCGGGH
T ss_pred Eec--C-----------------CCCEEEEEccceEEEEEeHHHHHHHHHHChHHH
Confidence 999 1 157799999999999999999999999999987
No 51
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.40 E-value=8.8e-13 Score=139.57 Aligned_cols=117 Identities=15% Similarity=0.144 Sum_probs=103.1
Q ss_pred HhHHHhhcCcccccCCHHHHHHHHhccce-eEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceee
Q 009549 349 LGTELLRNVKEFERWGEKELVDLSDCLNP-VFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDY 427 (532)
Q Consensus 349 ~~~~~l~~i~~F~~~s~~~l~~l~~~l~~-~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~ 427 (532)
...+.+.++++|.+++++.+..++..++. ..|.+|++|+++||.++.+|||.+|.|+++ .. ++. .+..
T Consensus 334 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~--------~~--~~~-~~~~ 402 (469)
T 1o7f_A 334 IIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVV--------IY--GKG-VVCT 402 (469)
T ss_dssp HHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEE--------ET--TTE-EEEE
T ss_pred HHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEE--------Ec--CCe-eEEE
Confidence 34677899999999999999999999985 499999999999999999999999999993 22 122 6889
Q ss_pred cCCCCeechhhhhhhhhhcCCCCCCCCCCccceEEEcc-eEEEEEeCHHHHHHHHHHchHHH
Q 009549 428 LRYGDFCGEELIAWAQQKVDNPSSSNLPISTTTIQALT-EVEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 428 l~~G~~FGe~~l~~~~~~l~~~~~~~~~~r~~tv~a~t-~~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
+++|++|||.++ +...+ |+++++|.+ +|+++.|++++|.+++..+|++.
T Consensus 403 l~~G~~fGe~~l------l~~~~------~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~ 452 (469)
T 1o7f_A 403 LHEGDDFGKLAL------VNDAP------RAASIVLREDNCHFLRVDKEDFNRILRDVEANT 452 (469)
T ss_dssp EETTCEECGGGG------TCCSC------CSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC-
T ss_pred ecCCCEEEEehh------hcCCC------ceEEEEEecCCEEEEEEcHHHHHHHHHHChHHH
Confidence 999999999999 65543 899999998 79999999999999999999886
No 52
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.40 E-value=1.1e-12 Score=151.48 Aligned_cols=137 Identities=24% Similarity=0.263 Sum_probs=111.0
Q ss_pred HHHHhCChhHHHHHHHHHhHHHhhcCcccccCCHHHHHHHHhccceeEecCCceEeecCCCCCeEEEEEeeEEEEeeccc
Q 009549 332 NLVNNLPQGLRSQVKGELGTELLRNVKEFERWGEKELVDLSDCLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARN 411 (532)
Q Consensus 332 ~il~~Lp~~Lr~~i~~~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~ 411 (532)
..|+.-| .-|.+=-.++-...|+++++|+++++..+.+|+..|+.+.|.+|++|+++||.++.+|+|.+|+|+++..+.
T Consensus 23 ~~L~K~p-~~Rt~edl~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~ 101 (999)
T 4f7z_A 23 ACLDKRP-LERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSET 101 (999)
T ss_dssp HHHHSCS-SSCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSS
T ss_pred HHhcCCc-ccCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecC
Confidence 3445544 345333334445678999999999999999999999999999999999999999999999999999953222
Q ss_pred ceeeecCCCCCc-ceeecCCCCeechhhhhhhhhhcCCCCCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHchHHH
Q 009549 412 VTIATSSDGHNG-KKDYLRYGDFCGEELIAWAQQKVDNPSSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 412 ~~~~~~~~~~~~-~~~~l~~G~~FGe~~l~~~~~~l~~~~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
+....+ .+..+++|+.||| ++ +.+.+ |+++++|.++|++++|++++|..++++||+..
T Consensus 102 ------~~~~~~~~v~~l~~G~sFGE-al------l~n~p------RtaTv~a~~~s~l~~l~r~~F~~i~~~~~e~~ 160 (999)
T 4f7z_A 102 ------SSHQDAVTICTLGIGTAFGE-SI------LDNTP------RHATIVTRESSELLRIEQEDFKALWEKYRQYM 160 (999)
T ss_dssp ------SCTTSCEEEEEEETTCEECG-GG------GGTCC------CSSEEEESSSEEEEEEEHHHHHHHHHHHHHHH
T ss_pred ------CCCCCceeEEEecCCcchhh-hh------ccCCC------cceEEEeccceEEEEEEHHHHHHHHHhChHHH
Confidence 111111 6889999999999 66 44443 89999999999999999999999999999875
No 53
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.38 E-value=2.3e-12 Score=124.59 Aligned_cols=114 Identities=14% Similarity=0.182 Sum_probs=97.2
Q ss_pred HhhcCcccccCCHHHHHHHHhccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCC
Q 009549 353 LLRNVKEFERWGEKELVDLSDCLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGD 432 (532)
Q Consensus 353 ~l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~ 432 (532)
++.+...+..++++.++.++..++...|.+|++|+++|+.++.+|||.+|.|+++. ...+|+...+..+++|+
T Consensus 10 ~~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-------~~~~G~~~~~~~~~~G~ 82 (250)
T 3e6c_C 10 FCGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDI-------IFEDGSEKLLYYAGGNS 82 (250)
T ss_dssp CCCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEE-------ECTTSCEEEEEEECTTC
T ss_pred hhhhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEE-------ECCCCCEEEEEEecCCC
Confidence 34445555889999999999999999999999999999999999999999999942 22344443788999999
Q ss_pred eechhhhhhhhhhcCCCCCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHchHHH
Q 009549 433 FCGEELIAWAQQKVDNPSSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 433 ~FGe~~l~~~~~~l~~~~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
+||+ + +.+. ++++++|.++|+++.+++++|.++++++|++.
T Consensus 83 ~~G~--~------l~~~-------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~ 123 (250)
T 3e6c_C 83 LIGK--L------YPTG-------NNIYATAMEPTRTCWFSEKSLRTVFRTDEDMI 123 (250)
T ss_dssp EECC--C------SCCS-------CCEEEEESSSEEEEEECHHHHHHHHHHCTHHH
T ss_pred EEee--e------cCCC-------CceEEEEcccEEEEEEcHHHHHHHHHHCHHHH
Confidence 9999 4 3332 47899999999999999999999999999987
No 54
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.31 E-value=1.8e-11 Score=117.82 Aligned_cols=107 Identities=18% Similarity=0.186 Sum_probs=90.7
Q ss_pred HHHHHHHHhccc---eeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeechhhhhh
Q 009549 365 EKELVDLSDCLN---PVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCGEELIAW 441 (532)
Q Consensus 365 ~~~l~~l~~~l~---~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~l~~ 441 (532)
+++++.++.... ...|.+|++|+++|+.++.+|||.+|.|+++. ...+|+...+..+++|++||+.++
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~-------~~~~G~~~~l~~~~~g~~~G~~~~-- 100 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSR-------VYEAGEEITVALLRENSVFGVLSL-- 100 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEE-------ECTTCCEEEEEEECTTCEESCHHH--
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEE-------ECCCCCEEEEEEecCCCEEcchHH--
Confidence 677888888888 99999999999999999999999999999942 223444437889999999999988
Q ss_pred hhhhcCCCCCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHchHHH
Q 009549 442 AQQKVDNPSSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 442 ~~~~l~~~~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
+...+ ..+.++++|.++|+++.+++++|.++++++|++.
T Consensus 101 ----~~~~~----~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~ 139 (243)
T 3la7_A 101 ----LTGNK----SDRFYHAVAFTPVELLSAPIEQVEQALKENPELS 139 (243)
T ss_dssp ----HSSCC----SBCCEEEEESSSEEEEEEEHHHHHHHHTTCHHHH
T ss_pred ----hCCCC----CcceEEEEEccceEEEEEcHHHHHHHHHHCHHHH
Confidence 44432 0145799999999999999999999999999997
No 55
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.30 E-value=3.1e-11 Score=115.67 Aligned_cols=109 Identities=17% Similarity=0.280 Sum_probs=87.8
Q ss_pred cCCHHHHHHHHh--ccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeechhhh
Q 009549 362 RWGEKELVDLSD--CLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCGEELI 439 (532)
Q Consensus 362 ~~s~~~l~~l~~--~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~l 439 (532)
+++++.++.++. ..+...|.+|++|+++||.++.+|||.+|.|+++. ...+|+...+..+ +|++||+.++
T Consensus 3 ~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~-------~~~~G~e~~~~~~-~G~~~Ge~~~ 74 (238)
T 2bgc_A 3 NAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTS-------ISENGTIMNLQYY-KGAFVIMSGF 74 (238)
T ss_dssp -CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEE-------ECTTSCEEEEEEE-ESSEEEESBC
T ss_pred CCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEE-------ECCCCCEEEEEEc-CCCEecchhh
Confidence 577888888885 59999999999999999999999999999999942 2234444367777 9999999998
Q ss_pred hhhhhhcCCCCCCCCCCccceEEEc-ceEEEEEeCHHHHHHHHHHchHHH
Q 009549 440 AWAQQKVDNPSSSNLPISTTTIQAL-TEVEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 440 ~~~~~~l~~~~~~~~~~r~~tv~a~-t~~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
+...+. ++..++.|. ++|+++.|++++|.++++++|++.
T Consensus 75 ------~~~~~~----~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~ 114 (238)
T 2bgc_A 75 ------IDTETS----VGYYNLEVISEQATAYVIKINELKELLSKNLTHF 114 (238)
T ss_dssp ------TTTCCB----SCCCEEEECSSEEEEEEEEHHHHHHHHHHCHHHH
T ss_pred ------hcCCCc----CcceeEEEEEcceEEEEEeHHHHHHHHHHCHHHH
Confidence 544320 014577777 599999999999999999999997
No 56
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.30 E-value=4.3e-12 Score=139.85 Aligned_cols=134 Identities=16% Similarity=0.188 Sum_probs=111.7
Q ss_pred HHHHHhCChhHHHHHHHHHhHHHhhcCcccccCCHHHHHHHHhccc-eeEecCCceEeecCCCCCeEEEEEeeEEEEeec
Q 009549 331 VNLVNNLPQGLRSQVKGELGTELLRNVKEFERWGEKELVDLSDCLN-PVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSA 409 (532)
Q Consensus 331 ~~il~~Lp~~Lr~~i~~~~~~~~l~~i~~F~~~s~~~l~~l~~~l~-~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~ 409 (532)
..++.. |+..|.+-..+...+.+.++++|.+++++.++.++..++ ...|.+|++|+++||.++.+|||.+|.|+++
T Consensus 12 r~iL~k-~p~~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~-- 88 (694)
T 3cf6_E 12 RMILRK-PPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVV-- 88 (694)
T ss_dssp HHHHHS-CGGGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEE--
T ss_pred HHHHcC-ChhhCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEE--
Confidence 345543 444455444445577899999999999999999999998 7899999999999999999999999999993
Q ss_pred ccceeeecCCCCCcceeecCCCCeechhhhhhhhhhcCCCCCCCCCCccceEEEcc-eEEEEEeCHHHHHHHHHHchHHH
Q 009549 410 RNVTIATSSDGHNGKKDYLRYGDFCGEELIAWAQQKVDNPSSSNLPISTTTIQALT-EVEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~l~~G~~FGe~~l~~~~~~l~~~~~~~~~~r~~tv~a~t-~~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
.. |+ ..+..+++|++|||.++ +...+ ++++++|.+ +|+++.|++++|.++++++|++.
T Consensus 89 ------~~--g~-~il~~l~~Gd~fGe~al------~~~~~------~~~tv~A~edd~~ll~I~~~~f~~ll~~~p~l~ 147 (694)
T 3cf6_E 89 ------IY--GK-GVVCTLHEGDDFGKLAL------VNDAP------RAASIVLREDNCHFLRVDKEDFNRILRDVEANT 147 (694)
T ss_dssp ------ET--TT-EEEEEEETTCEECHHHH------HHTCB------CSSEEEECSSSEEEEEEEHHHHHHHTTTTCCCC
T ss_pred ------Ee--CC-EEEEEeCCCCEeehHHH------hCCCC------ceEEEEEeeCceEEEEEeHHHHHHHHHHCHHHH
Confidence 32 22 27899999999999998 43332 789999999 59999999999999999999884
No 57
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.29 E-value=1.4e-11 Score=103.86 Aligned_cols=53 Identities=19% Similarity=0.281 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHhhccCCCCCcCCChhhHHHHHHHHHHHHHHHHHHHhhhhhH
Q 009549 231 KFLHCLRWGLQNLSAFGQNLEASTDILDNIFAICMTNFGVVLFVFLIGKMQSD 283 (532)
Q Consensus 231 ~Yi~slYwa~~TmtTvGyGdi~p~t~~E~i~~i~~mi~G~~~~a~iig~i~~i 283 (532)
.|..|+||+++|+|||||||++|.|..+++++++.+++|..++++.++.+++.
T Consensus 49 ~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~ 101 (114)
T 2q67_A 49 RPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVN 101 (114)
T ss_dssp CHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999887
No 58
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.28 E-value=1.7e-12 Score=107.59 Aligned_cols=53 Identities=11% Similarity=0.272 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhhccCCCCCcCCChhhHHHHHHHHHHHHHHHHHHHhhhhhH
Q 009549 231 KFLHCLRWGLQNLSAFGQNLEASTDILDNIFAICMTNFGVVLFVFLIGKMQSD 283 (532)
Q Consensus 231 ~Yi~slYwa~~TmtTvGyGdi~p~t~~E~i~~i~~mi~G~~~~a~iig~i~~i 283 (532)
.|..|+||+++|+|||||||++|.|..+++++++.+++|..++++.+|.+++.
T Consensus 40 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~ 92 (103)
T 2k1e_A 40 SYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATD 92 (103)
T ss_dssp CGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTT
T ss_pred cHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57789999999999999999999999999999999999999999999999987
No 59
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.24 E-value=3e-11 Score=139.56 Aligned_cols=115 Identities=16% Similarity=0.139 Sum_probs=99.2
Q ss_pred HHhHHHhhcCcccccCCHHHHHHHHhccceeE-ecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCccee
Q 009549 348 ELGTELLRNVKEFERWGEKELVDLSDCLNPVF-FTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKD 426 (532)
Q Consensus 348 ~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~-~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~ 426 (532)
+...+.+.++|.|.+++...++.++..+.... +..|++|+++||.++.+|||.+|.|+|+ ...++ .+.
T Consensus 333 e~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~--------~~~~~---~v~ 401 (999)
T 4f7z_A 333 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVV--------IYGKG---VVC 401 (999)
T ss_dssp HHHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEE--------ETTTE---EEE
T ss_pred HHHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEE--------EcCCc---ceE
Confidence 34467789999999999999999999999655 4679999999999999999999999993 22111 688
Q ss_pred ecCCCCeechhhhhhhhhhcCCCCCCCCCCccceEEEcce-EEEEEeCHHHHHHHHHHch
Q 009549 427 YLRYGDFCGEELIAWAQQKVDNPSSSNLPISTTTIQALTE-VEGFYLLASDLKNAFIEHR 485 (532)
Q Consensus 427 ~l~~G~~FGe~~l~~~~~~l~~~~~~~~~~r~~tv~a~t~-~~l~~L~~~~f~~ll~~~P 485 (532)
.+++|++|||.++ +...+ |.+|++|.++ |++++++|+||.+++.+-.
T Consensus 402 ~L~~Gd~FGElAL------L~~~P------R~aTV~a~~d~c~fl~i~k~df~~il~~~e 449 (999)
T 4f7z_A 402 TLHEGDDFGKLAL------VNDAP------RAASIVLREDNCHFLRVDKEDGNRILRDVE 449 (999)
T ss_dssp EEETTCEECGGGG------TCSCB------CSSEEEESSSSEEEEEEEHHHHHHHHHHHH
T ss_pred EecCCCcccchhh------ccCCC------eeEEEEEecCceEEEEeeHHHHHHHHhHHH
Confidence 9999999999999 76664 8999999985 9999999999999997643
No 60
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.22 E-value=8e-11 Score=96.14 Aligned_cols=52 Identities=19% Similarity=0.254 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHhhccCCCCCcCCChhhHHHHHHHHHHHHHHHHHHHhhhhhH
Q 009549 232 FLHCLRWGLQNLSAFGQNLEASTDILDNIFAICMTNFGVVLFVFLIGKMQSD 283 (532)
Q Consensus 232 Yi~slYwa~~TmtTvGyGdi~p~t~~E~i~~i~~mi~G~~~~a~iig~i~~i 283 (532)
|..|+||+++|+|||||||++|.|..+++++++.+++|..++++.++.++..
T Consensus 33 ~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~ 84 (97)
T 3ouf_A 33 PIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVN 84 (97)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999999999999999999999886
No 61
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=99.20 E-value=2.5e-11 Score=95.90 Aligned_cols=53 Identities=13% Similarity=0.258 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHhhccCCCCCcCCChhhHHHHHHHHHHHHHHHHHHHhhhhhH
Q 009549 231 KFLHCLRWGLQNLSAFGQNLEASTDILDNIFAICMTNFGVVLFVFLIGKMQSD 283 (532)
Q Consensus 231 ~Yi~slYwa~~TmtTvGyGdi~p~t~~E~i~~i~~mi~G~~~~a~iig~i~~i 283 (532)
.|..|+||+++|+|||||||++|.|..+++++++.+++|..++++.++.+++.
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~ 80 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEF 80 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999998864
No 62
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=99.13 E-value=7.3e-12 Score=113.15 Aligned_cols=54 Identities=11% Similarity=0.259 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHhhccCCCCCcCCChhhHHHHHHHHHHHHHHHHHHHhhhhhH
Q 009549 230 QKFLHCLRWGLQNLSAFGQNLEASTDILDNIFAICMTNFGVVLFVFLIGKMQSD 283 (532)
Q Consensus 230 ~~Yi~slYwa~~TmtTvGyGdi~p~t~~E~i~~i~~mi~G~~~~a~iig~i~~i 283 (532)
..|..|+||+++|+|||||||++|.|..+++++++.+++|++++++++|.+++.
T Consensus 66 ~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~ 119 (166)
T 3pjs_K 66 ITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATW 119 (166)
T ss_dssp CSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSS
T ss_pred CCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357789999999999999999999999999999999999999999999999987
No 63
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.10 E-value=4.4e-10 Score=104.04 Aligned_cols=85 Identities=19% Similarity=0.175 Sum_probs=71.5
Q ss_pred eEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeechhhhhhhhhhcCCCCCCCCCCc
Q 009549 378 VFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCGEELIAWAQQKVDNPSSSNLPIS 457 (532)
Q Consensus 378 ~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~l~~~~~~l~~~~~~~~~~r 457 (532)
..|.+|++|+++||.++.+|+|.+|.|+++. ...+|+...+..+++|++||| ++ +...+ +
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~-------~~~~g~~~~~~~~~~G~~~Ge-~~------~~~~~------~ 61 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVE-------LLPDGRLITLRHVLPGDYFGE-EA------LEGKA------Y 61 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEE-------ECTTSCEEEEEEECTTCEECG-GG------GTCSB------C
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEE-------ECCCCCEEEEEEecCCCEech-hh------hCCCC------c
Confidence 5789999999999999999999999999942 223444337889999999999 88 55443 7
Q ss_pred cceEEEcceEEEEEeCHHHHHHHHHHchHHH
Q 009549 458 TTTIQALTEVEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 458 ~~tv~a~t~~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
+++++|.++|+++.+++++|. |++.
T Consensus 62 ~~~~~A~~~~~v~~i~~~~~~------p~~~ 86 (195)
T 3b02_A 62 RYTAEAMTEAVVQGLEPRAMD------HEAL 86 (195)
T ss_dssp SSEEEESSSEEEEEECGGGCC------HHHH
T ss_pred eeEEEECCcEEEEEEcHHHcC------HHHH
Confidence 899999999999999999998 7765
No 64
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=99.01 E-value=7.9e-10 Score=109.02 Aligned_cols=54 Identities=11% Similarity=0.146 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHhhccCCCCCcCCChhhHHHHHHHHHHHHHHHHHHHhhhhhH
Q 009549 230 QKFLHCLRWGLQNLSAFGQNLEASTDILDNIFAICMTNFGVVLFVFLIGKMQSD 283 (532)
Q Consensus 230 ~~Yi~slYwa~~TmtTvGyGdi~p~t~~E~i~~i~~mi~G~~~~a~iig~i~~i 283 (532)
..|..|+|||++|||||||||++|.+...++++++.+++|.+++|+++|.+.+.
T Consensus 81 ~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~ 134 (301)
T 1xl4_A 81 GSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYAR 134 (301)
T ss_dssp TCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347899999999999999999999999999999999999999999999987654
No 65
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=98.95 E-value=2.1e-09 Score=100.04 Aligned_cols=91 Identities=22% Similarity=0.209 Sum_probs=71.2
Q ss_pred HHhccceeEecCCceEeecCCCC--CeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeechhhhhhhhhhcCC
Q 009549 371 LSDCLNPVFFTDRTRIFREGDPI--DEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCGEELIAWAQQKVDN 448 (532)
Q Consensus 371 l~~~l~~~~~~~ge~I~~~Gd~~--~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~l~~~~~~l~~ 448 (532)
+...++...|.+|++|+++||.+ +.+|||.+|.|.++. ...+|+...+..+++|++||+ ++ +..
T Consensus 1 l~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~-------~~~~G~~~~~~~~~~g~~~G~-~~------l~~ 66 (202)
T 2zcw_A 1 MTQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEA-------VDEEGNALTLRLVRPGGFFGE-EA------LFG 66 (202)
T ss_dssp -----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEE-------ECTTSCEEEEEEECTTCEECT-HH------HHT
T ss_pred CCccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEE-------ECCCCcEEEEEEecCCCEeee-hh------cCC
Confidence 35678899999999999999999 999999999999942 223444437889999999999 76 333
Q ss_pred CCCCCCCCccceEEEcceEEEEEeCHHHHHHHHHHchHHH
Q 009549 449 PSSSNLPISTTTIQALTEVEGFYLLASDLKNAFIEHRRYQ 488 (532)
Q Consensus 449 ~~~~~~~~r~~tv~a~t~~~l~~L~~~~f~~ll~~~P~~~ 488 (532)
.+ +.++++|.++|+++.+ +++|. |++.
T Consensus 67 ~~------~~~~~~A~~~~~v~~i-~~~~~------p~~~ 93 (202)
T 2zcw_A 67 QE------RIYFAEAATDVRLEPL-PENPD------PELL 93 (202)
T ss_dssp CC------BCSEEEESSCEEEEEC-CSSCC------HHHH
T ss_pred CC------cceEEEEcccEEEEEE-hHhcC------HHHH
Confidence 32 6889999999999999 99886 6665
No 66
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=98.94 E-value=5.5e-10 Score=111.29 Aligned_cols=53 Identities=11% Similarity=0.157 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHhhccCCCCCcCCChhhHHHHHHHHHHHHHHHHHHHhhhhhH
Q 009549 231 KFLHCLRWGLQNLSAFGQNLEASTDILDNIFAICMTNFGVVLFVFLIGKMQSD 283 (532)
Q Consensus 231 ~Yi~slYwa~~TmtTvGyGdi~p~t~~E~i~~i~~mi~G~~~~a~iig~i~~i 283 (532)
.|..|+|||++|||||||||++|.|..+++++++.+++|.+++|+++|.+.+.
T Consensus 96 s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~ 148 (333)
T 1p7b_A 96 GFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFAR 148 (333)
T ss_dssp STHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999999999999999998765
No 67
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.88 E-value=2.7e-09 Score=104.81 Aligned_cols=53 Identities=15% Similarity=0.193 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhhccCCCCCcCCChhhHHHHHHHHHHHHHHHHHHHhhhhhH
Q 009549 231 KFLHCLRWGLQNLSAFGQNLEASTDILDNIFAICMTNFGVVLFVFLIGKMQSD 283 (532)
Q Consensus 231 ~Yi~slYwa~~TmtTvGyGdi~p~t~~E~i~~i~~mi~G~~~~a~iig~i~~i 283 (532)
.|..|+||+++|||||||||++|.|...++++++.+++|+.+++++++.++..
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~ 167 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDR 167 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999887
No 68
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=98.78 E-value=6.3e-09 Score=103.35 Aligned_cols=53 Identities=11% Similarity=0.100 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHhhccCCCCCcCCChhhHHHHHHHHHHHHHHHHHHHhhhhhH
Q 009549 231 KFLHCLRWGLQNLSAFGQNLEASTDILDNIFAICMTNFGVVLFVFLIGKMQSD 283 (532)
Q Consensus 231 ~Yi~slYwa~~TmtTvGyGdi~p~t~~E~i~~i~~mi~G~~~~a~iig~i~~i 283 (532)
.|..|+|||++|||||||||+.|.|...++++++.+++|.+++|+++|.+.+.
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~ 130 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIK 130 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47789999999999999999999999999999999999999999999998865
No 69
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.66 E-value=5.1e-08 Score=105.50 Aligned_cols=53 Identities=17% Similarity=0.265 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhhccCCCCCcCCChhhHHHHHHHHHHHHHHHHHHHhh-hhhH
Q 009549 231 KFLHCLRWGLQNLSAFGQNLEASTDILDNIFAICMTNFGVVLFVFLIGK-MQSD 283 (532)
Q Consensus 231 ~Yi~slYwa~~TmtTvGyGdi~p~t~~E~i~~i~~mi~G~~~~a~iig~-i~~i 283 (532)
.|..|+||+++|||||||||++|.|..+++++++++++|.+++++.++. +.+.
T Consensus 51 ~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 104 (565)
T 4gx0_A 51 SFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSM 104 (565)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred chhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999999999999999998 4443
No 70
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.64 E-value=3e-08 Score=95.85 Aligned_cols=53 Identities=15% Similarity=0.202 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHhhccCCCCCcCCChhhHHHHHHHHHHHHHHHHHHHhhhhhH
Q 009549 231 KFLHCLRWGLQNLSAFGQNLEASTDILDNIFAICMTNFGVVLFVFLIGKMQSD 283 (532)
Q Consensus 231 ~Yi~slYwa~~TmtTvGyGdi~p~t~~E~i~~i~~mi~G~~~~a~iig~i~~i 283 (532)
.|..|+||+++|+|||||||++|.|+..++++++.+++|+.+++++++.++..
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~ 145 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQR 145 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999998754
No 71
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.63 E-value=9.6e-08 Score=94.93 Aligned_cols=53 Identities=15% Similarity=0.281 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhhccCCCCCcCC--ChhhHHHHHHHHHHHHHHHHHHHhhhhhH
Q 009549 231 KFLHCLRWGLQNLSAFGQNLEAST--DILDNIFAICMTNFGVVLFVFLIGKMQSD 283 (532)
Q Consensus 231 ~Yi~slYwa~~TmtTvGyGdi~p~--t~~E~i~~i~~mi~G~~~~a~iig~i~~i 283 (532)
.+..++|||+.|+|||||||++|+ +..-++++++.+++|.++.|..+|.+.+-
T Consensus 91 sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak 145 (340)
T 3sya_A 91 GFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVK 145 (340)
T ss_dssp STTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999996 67899999999999999999999987654
No 72
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.61 E-value=2.6e-08 Score=97.77 Aligned_cols=53 Identities=9% Similarity=0.070 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhhccCCCCCcCCChhhH------HHHHHHHHHHHHHHHHHHhhhhhH
Q 009549 231 KFLHCLRWGLQNLSAFGQNLEASTDILDN------IFAICMTNFGVVLFVFLIGKMQSD 283 (532)
Q Consensus 231 ~Yi~slYwa~~TmtTvGyGdi~p~t~~E~------i~~i~~mi~G~~~~a~iig~i~~i 283 (532)
.|+.|+||+++|+|||||||++|.++.++ +++++++++|..+++++++.+++.
T Consensus 224 ~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~ 282 (309)
T 3um7_A 224 SKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNW 282 (309)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999998887 599999999999999999998876
No 73
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.60 E-value=3.5e-08 Score=95.44 Aligned_cols=53 Identities=15% Similarity=0.264 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhhccCCCCCcCCChhh-------HHHHHHHHHHHHHHHHHHHhhhhhH
Q 009549 231 KFLHCLRWGLQNLSAFGQNLEASTDILD-------NIFAICMTNFGVVLFVFLIGKMQSD 283 (532)
Q Consensus 231 ~Yi~slYwa~~TmtTvGyGdi~p~t~~E-------~i~~i~~mi~G~~~~a~iig~i~~i 283 (532)
.|+.|+||++.|+|||||||++|.++.. ++++++.+++|..+++++++.++++
T Consensus 201 s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~ 260 (280)
T 3ukm_A 201 NFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCEL 260 (280)
T ss_dssp CHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred chhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999998853 9999999999999999999999987
No 74
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.50 E-value=3.8e-07 Score=90.78 Aligned_cols=53 Identities=15% Similarity=0.358 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHhhccCCCCCcCC--ChhhHHHHHHHHHHHHHHHHHHHhhhhhH
Q 009549 231 KFLHCLRWGLQNLSAFGQNLEAST--DILDNIFAICMTNFGVVLFVFLIGKMQSD 283 (532)
Q Consensus 231 ~Yi~slYwa~~TmtTvGyGdi~p~--t~~E~i~~i~~mi~G~~~~a~iig~i~~i 283 (532)
.+..++|||+.|+|||||||+.|+ ++.-++++.+.+++|.++.|..+|.+.+-
T Consensus 94 sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak 148 (343)
T 3spc_A 94 GFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAK 148 (343)
T ss_dssp SHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999864 78999999999999999999999877653
No 75
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=98.50 E-value=1.6e-07 Score=92.39 Aligned_cols=55 Identities=5% Similarity=-0.129 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHHHhhccCCC-CCc-CCChhh----HHHHHHHHHHHHHHHHHHHhhhhhH
Q 009549 229 PQKFLHCLRWGLQNLSAFGQN-LEA-STDILD----NIFAICMTNFGVVLFVFLIGKMQSD 283 (532)
Q Consensus 229 ~~~Yi~slYwa~~TmtTvGyG-di~-p~t~~E----~i~~i~~mi~G~~~~a~iig~i~~i 283 (532)
...+..|+||++.|+||+||| |+. |.+... ..+++++++.|.++.+..+|.+.+-
T Consensus 178 F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~ 238 (285)
T 3rvy_A 178 FGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDA 238 (285)
T ss_dssp HSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455778999999999999999 986 765543 7888999999999999999998776
No 76
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=98.38 E-value=3.6e-08 Score=99.46 Aligned_cols=52 Identities=13% Similarity=0.301 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHhhccCCCCCcCCChhhHHHHHHHHHHHHHHHHHHHhhhhhH
Q 009549 232 FLHCLRWGLQNLSAFGQNLEASTDILDNIFAICMTNFGVVLFVFLIGKMQSD 283 (532)
Q Consensus 232 Yi~slYwa~~TmtTvGyGdi~p~t~~E~i~~i~~mi~G~~~~a~iig~i~~i 283 (532)
|..|+||+++|+|||||||++|.|..+++++++++++|.++++++++.+++.
T Consensus 46 ~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~ 97 (336)
T 1lnq_A 46 WTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEF 97 (336)
T ss_dssp SSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTT
T ss_pred HHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999999999999999999887
No 77
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=96.59 E-value=0.0016 Score=61.29 Aligned_cols=23 Identities=13% Similarity=-0.242 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHhhccCCCCC
Q 009549 229 PQKFLHCLRWGLQNLSAFGQNLE 251 (532)
Q Consensus 229 ~~~Yi~slYwa~~TmtTvGyGdi 251 (532)
++....|++|.+.++||.|++|+
T Consensus 163 F~~~~~a~~~lf~~~t~~~w~~i 185 (229)
T 4dxw_A 163 WGDLGISLITLFQVLTLSSWETV 185 (229)
T ss_dssp TSSHHHHHHHHHHHHTTSSTHHH
T ss_pred ccCHHHHHHHHHHHHccCCHHHH
Confidence 34567899999999999999997
No 78
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=70.01 E-value=20 Score=28.66 Aligned_cols=68 Identities=13% Similarity=0.133 Sum_probs=47.1
Q ss_pred ccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeechhhhhhhhhhcCCCCCCC
Q 009549 374 CLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCGEELIAWAQQKVDNPSSSN 453 (532)
Q Consensus 374 ~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~l~~~~~~l~~~~~~~ 453 (532)
.+....+.||..+-..-...+++++|++|++++.. + + ....+++|+.+= +.+.
T Consensus 37 ~v~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i---------~-~---~~~~l~~Gd~i~----------ip~~---- 89 (114)
T 3fjs_A 37 EVMRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGV---------D-G---AQRRLHQGDLLY----------LGAG---- 89 (114)
T ss_dssp EEEEEEECTTCEEEEECCSSCEEEEEEESCEEEEE---------T-T---EEEEECTTEEEE----------ECTT----
T ss_pred EEEEEEECCCCccCceeCCCcEEEEEEECEEEEEE---------C-C---EEEEECCCCEEE----------ECCC----
Confidence 34566788999886666666799999999999932 2 2 246789988865 3333
Q ss_pred CCCccceEEEcceEEEEE
Q 009549 454 LPISTTTIQALTEVEGFY 471 (532)
Q Consensus 454 ~~~r~~tv~a~t~~~l~~ 471 (532)
...++++.+++.++.
T Consensus 90 ---~~H~~~~~~~~~~~~ 104 (114)
T 3fjs_A 90 ---AAHDVNAITNTSLLV 104 (114)
T ss_dssp ---CCEEEEESSSEEEEE
T ss_pred ---CcEEEEeCCCcEEEE
Confidence 355777777776544
No 79
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=66.09 E-value=26 Score=27.68 Aligned_cols=66 Identities=18% Similarity=0.098 Sum_probs=42.5
Q ss_pred eeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeechhhhhhhhhhcCCCCCCCCCC
Q 009549 377 PVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCGEELIAWAQQKVDNPSSSNLPI 456 (532)
Q Consensus 377 ~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~l~~~~~~l~~~~~~~~~~ 456 (532)
...+.||..+-.......++++|++|++.+.. ++ ....+++|+.+= +.+.
T Consensus 42 ~~~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i----------~~---~~~~l~~Gd~i~----------i~~~------- 91 (114)
T 2ozj_A 42 LFSFADGESVSEEEYFGDTLYLILQGEAVITF----------DD---QKIDLVPEDVLM----------VPAH------- 91 (114)
T ss_dssp EEEEETTSSCCCBCCSSCEEEEEEEEEEEEEE----------TT---EEEEECTTCEEE----------ECTT-------
T ss_pred EEEECCCCccccEECCCCeEEEEEeCEEEEEE----------CC---EEEEecCCCEEE----------ECCC-------
Confidence 33456777665555566789999999999831 22 345789998864 3333
Q ss_pred ccceEEEcceEEEEEe
Q 009549 457 STTTIQALTEVEGFYL 472 (532)
Q Consensus 457 r~~tv~a~t~~~l~~L 472 (532)
....+++.++|.++.+
T Consensus 92 ~~H~~~~~~~~~~~~i 107 (114)
T 2ozj_A 92 KIHAIAGKGRFKMLQI 107 (114)
T ss_dssp CCBEEEEEEEEEEEEE
T ss_pred CcEEEEeCCCcEEEEE
Confidence 2445666667766654
No 80
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=64.50 E-value=2.6 Score=36.17 Aligned_cols=47 Identities=11% Similarity=0.058 Sum_probs=31.3
Q ss_pred eeEEeeehhhhhhcccceeeEEEE-EEecCceEEecCHHHHHHhhhhhHHHHHhhcChhHH
Q 009549 31 ITATVLRSFIDLHKLPRIIHLIYV-ELCGNKEEVKKSAYATARLWIFFLIDILAVLPIPQV 90 (532)
Q Consensus 31 ~~~~~~~~~~d~~f~~~~~Di~l~-~~~~~g~~V~~d~~~Ia~lk~~F~~Dlis~lP~~~~ 90 (532)
..+..+|.++-++| .+|.+++ ... .|+++ -+|+ =++|++|++|+...
T Consensus 52 ~~~~~id~~~~~iF---~~Ey~lRl~~a-------~~k~~--f~~~-~iiDllailP~~~~ 99 (147)
T 2kyh_A 52 VRLYLVDLILVIIL---WADYAYRAYKS-------GDPAG--YVKK-TLYEIPALVPAGLL 99 (147)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHH-------TCHHH--HHHH-STTTHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHC-------CcHHH--HHHH-HHHHHHHHHHHHHH
Confidence 34667889999999 9998887 211 12111 1343 57899999999643
No 81
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=62.47 E-value=26 Score=32.02 Aligned_cols=69 Identities=13% Similarity=0.146 Sum_probs=52.5
Q ss_pred ccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeechhhhhhhhhhcCCCCCCC
Q 009549 374 CLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCGEELIAWAQQKVDNPSSSN 453 (532)
Q Consensus 374 ~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~l~~~~~~l~~~~~~~ 453 (532)
.+....+.||+.+-..-.+.+.+.+|++|++++.. + + ....+++|+++= +.+.
T Consensus 38 ~~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i---------~-~---~~~~l~~Gd~~~----------~p~~---- 90 (227)
T 3rns_A 38 YISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFI---------E-N---NKKTISNGDFLE----------ITAN---- 90 (227)
T ss_dssp EEEEEEECTTCEEEECSCSSCEEEEEEESEEEEEE---------S-S---CEEEEETTEEEE----------ECSS----
T ss_pred EEEEEEECCCCccCccccCCCEEEEEEeCEEEEEE---------C-C---EEEEECCCCEEE----------ECCC----
Confidence 44566789999998877788999999999999931 2 2 246789988864 3333
Q ss_pred CCCccceEEEcceEEEEEe
Q 009549 454 LPISTTTIQALTEVEGFYL 472 (532)
Q Consensus 454 ~~~r~~tv~a~t~~~l~~L 472 (532)
.+..++|.++|.++.+
T Consensus 91 ---~~H~~~a~~~~~~l~i 106 (227)
T 3rns_A 91 ---HNYSIEARDNLKLIEI 106 (227)
T ss_dssp ---CCEEEEESSSEEEEEE
T ss_pred ---CCEEEEECCCcEEEEE
Confidence 3678899999999876
No 82
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=60.62 E-value=5.8 Score=33.21 Aligned_cols=45 Identities=11% Similarity=0.016 Sum_probs=31.4
Q ss_pred eeEEeeehhhhhhcccceeeEEEE-EE-ecCceEEecCHHHHHHhhhhhHHHHHhhcChhH
Q 009549 31 ITATVLRSFIDLHKLPRIIHLIYV-EL-CGNKEEVKKSAYATARLWIFFLIDILAVLPIPQ 89 (532)
Q Consensus 31 ~~~~~~~~~~d~~f~~~~~Di~l~-~~-~~~g~~V~~d~~~Ia~lk~~F~~Dlis~lP~~~ 89 (532)
..+..+|.++-++| .+|.+++ .- .+.... ++ |=++|+++++|+..
T Consensus 37 ~~l~~~d~~~~~iF---t~E~~lRl~~~~~~~~y----------~~-~niiDllailp~~~ 83 (132)
T 1ors_C 37 VRLYLVDLILVIIL---WADYAYRAYKSGDPAGY----------VK-KTLYEIPALVPAGL 83 (132)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHTTSTTTT----------TT-TCGGGTGGGSCHHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHCCCHHHH----------HH-HHHHHHHHHHHHHH
Confidence 34667889999999 8888887 21 111111 45 78899999999864
No 83
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=60.34 E-value=41 Score=26.36 Aligned_cols=68 Identities=16% Similarity=0.129 Sum_probs=44.8
Q ss_pred cceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeechhhhhhhhhhcCCCCCCCC
Q 009549 375 LNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCGEELIAWAQQKVDNPSSSNL 454 (532)
Q Consensus 375 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~l~~~~~~l~~~~~~~~ 454 (532)
+....+.||..+-..-....++++|.+|.+.+.. ++ ....+++|+.+= +.+.
T Consensus 42 ~~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~----------~~---~~~~l~~Gd~~~----------ip~~----- 93 (115)
T 1yhf_A 42 ITVFSLDKGQEIGRHSSPGDAMVTILSGLAEITI----------DQ---ETYRVAEGQTIV----------MPAG----- 93 (115)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEESEEEEEE----------TT---EEEEEETTCEEE----------ECTT-----
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeCEEEEEE----------CC---EEEEECCCCEEE----------ECCC-----
Confidence 4456678888775444456799999999999831 22 245788988874 3333
Q ss_pred CCccceEEEcceEEEEEe
Q 009549 455 PISTTTIQALTEVEGFYL 472 (532)
Q Consensus 455 ~~r~~tv~a~t~~~l~~L 472 (532)
.....++.++++++.+
T Consensus 94 --~~H~~~~~~~~~~~~v 109 (115)
T 1yhf_A 94 --IPHALYAVEAFQMLLV 109 (115)
T ss_dssp --SCEEEEESSCEEEEEE
T ss_pred --CCEEEEECCCceEEEE
Confidence 2446667677776654
No 84
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=55.43 E-value=53 Score=25.70 Aligned_cols=68 Identities=16% Similarity=0.131 Sum_probs=44.9
Q ss_pred cceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeechhhhhhhhhhcCCCCCCCC
Q 009549 375 LNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCGEELIAWAQQKVDNPSSSNL 454 (532)
Q Consensus 375 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~l~~~~~~l~~~~~~~~ 454 (532)
+....+.||..+-..-....++++|++|.+.+. . ++ ....+++|+.+= +.+.
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~--------~--~~---~~~~l~~Gd~~~----------ip~~----- 87 (116)
T 2pfw_A 36 AVKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVN--------V--DG---VIKVLTAGDSFF----------VPPH----- 87 (116)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEEECEEEE--------E--TT---EEEEECTTCEEE----------ECTT-----
T ss_pred EEEEEECCCCcCCcEECCcceEEEEEeeEEEEE--------E--CC---EEEEeCCCCEEE----------ECcC-----
Confidence 445667888876444444678999999999983 1 22 346789998864 3333
Q ss_pred CCccceEEEcceEEEEEe
Q 009549 455 PISTTTIQALTEVEGFYL 472 (532)
Q Consensus 455 ~~r~~tv~a~t~~~l~~L 472 (532)
....+++.++|+++.+
T Consensus 88 --~~H~~~~~~~~~~l~v 103 (116)
T 2pfw_A 88 --VDHGAVCPTGGILIDT 103 (116)
T ss_dssp --CCEEEEESSCEEEEEE
T ss_pred --CceeeEeCCCcEEEEE
Confidence 2446667677777665
No 85
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=53.69 E-value=69 Score=25.81 Aligned_cols=45 Identities=22% Similarity=0.281 Sum_probs=32.4
Q ss_pred eeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeec
Q 009549 377 PVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCG 435 (532)
Q Consensus 377 ~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FG 435 (532)
...+.||..+-..- ..+++++|++|++.+. . ++ ....+++||.+-
T Consensus 44 ~~~~~pG~~~~~H~-~~~E~~~Vl~G~~~~~--------~--~g---~~~~l~~GD~v~ 88 (119)
T 3lwc_A 44 YGRYAPGQSLTETM-AVDDVMIVLEGRLSVS--------T--DG---ETVTAGPGEIVY 88 (119)
T ss_dssp EEEECTTCEEEEEC-SSEEEEEEEEEEEEEE--------E--TT---EEEEECTTCEEE
T ss_pred EEEECCCCCcCccC-CCCEEEEEEeCEEEEE--------E--CC---EEEEECCCCEEE
Confidence 34567887764443 6789999999999992 2 22 346799999875
No 86
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=52.90 E-value=63 Score=25.73 Aligned_cols=79 Identities=16% Similarity=0.081 Sum_probs=49.4
Q ss_pred ccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeechhhhhhhhhhcCCCCCCC
Q 009549 374 CLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCGEELIAWAQQKVDNPSSSN 453 (532)
Q Consensus 374 ~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~l~~~~~~l~~~~~~~ 453 (532)
.+....+.||..+-..-....++++|++|++.+.. ++ ....+++|+.+= +.+.
T Consensus 42 ~~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~----------~~---~~~~l~~Gd~~~----------ip~~---- 94 (126)
T 4e2g_A 42 MLNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTI----------GE---ETRVLRPGMAYT----------IPGG---- 94 (126)
T ss_dssp EEEEEEECTTCEEEEECCSSEEEEEEEEECEEEEE----------TT---EEEEECTTEEEE----------ECTT----
T ss_pred EEEEEEECCCCcCCCccCCCceEEEEEEeEEEEEE----------CC---EEEEeCCCCEEE----------ECCC----
Confidence 34556778888875555556799999999999932 12 245788888764 3322
Q ss_pred CCCccceEEEcce-EEEE---EeCHHHHHHHHH
Q 009549 454 LPISTTTIQALTE-VEGF---YLLASDLKNAFI 482 (532)
Q Consensus 454 ~~~r~~tv~a~t~-~~l~---~L~~~~f~~ll~ 482 (532)
....+++.++ |.++ .-.++|+.+.++
T Consensus 95 ---~~H~~~~~~~~~~~l~v~~p~~~d~~~~~~ 124 (126)
T 4e2g_A 95 ---VRHRARTFEDGCLVLDIFSPPREDYARMAE 124 (126)
T ss_dssp ---CCEEEECCTTCEEEEEEEESCCHHHHHHHH
T ss_pred ---CcEEeEECCCCEEEEEEECCCCcchhhhhc
Confidence 2334555455 5544 335677776654
No 87
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=42.38 E-value=15 Score=40.50 Aligned_cols=52 Identities=10% Similarity=0.104 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhhccCCCCCcCCChhhHHHHHHHHHHHHHHHHHHHhhhhhH
Q 009549 231 KFLHCLRWGLQNLSAFGQNLEASTDILDNIFAICMTNFGVVLFVFLIGKMQSD 283 (532)
Q Consensus 231 ~Yi~slYwa~~TmtTvGyGdi~p~t~~E~i~~i~~mi~G~~~~a~iig~i~~i 283 (532)
....+++|++.++++.| ++..|.+...+++.+++++++.++.+.-.++++++
T Consensus 563 ~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~ 614 (823)
T 3kg2_A 563 GIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAF 614 (823)
T ss_dssp HHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999888 68899999999999999999999999999999988
No 88
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=39.75 E-value=1e+02 Score=26.85 Aligned_cols=50 Identities=22% Similarity=0.179 Sum_probs=31.7
Q ss_pred eeEecCCceEe---ecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeec
Q 009549 377 PVFFTDRTRIF---REGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCG 435 (532)
Q Consensus 377 ~~~~~~ge~I~---~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FG 435 (532)
...+.||...- ......+++++|++|++.+. ..+++.. ....+++||.+=
T Consensus 121 ~~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~--------~~~~~~~-~~~~l~~GD~~~ 173 (198)
T 2bnm_A 121 VVDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMK--------WGDKENP-KEALLPTGASMF 173 (198)
T ss_dssp EEEECCCCGGGCCCCCCCSSCEEEEEEESCEEEE--------ESCTTSC-EEEEECTTCEEE
T ss_pred EEEEcCCCCCcccccccCCCeEEEEEEeeeEEEE--------ECCcCCc-ccEEECCCCEEE
Confidence 34567776653 22334579999999999993 2221111 356799999874
No 89
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=39.57 E-value=82 Score=28.51 Aligned_cols=68 Identities=18% Similarity=0.174 Sum_probs=47.7
Q ss_pred ccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeechhhhhhhhhhcCCCCCCC
Q 009549 374 CLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCGEELIAWAQQKVDNPSSSN 453 (532)
Q Consensus 374 ~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~l~~~~~~l~~~~~~~ 453 (532)
.+....+.||..+-..-...+++++|++|++.+.. ++ ....+++|+.+= +.+.
T Consensus 154 ~~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i----------~g---~~~~l~~Gd~i~----------ip~~---- 206 (227)
T 3rns_A 154 VMTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYV----------DG---KPFIVKKGESAV----------LPAN---- 206 (227)
T ss_dssp EEEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEE----------TT---EEEEEETTEEEE----------ECTT----
T ss_pred EEEEEEECCCCccCCEECCCcEEEEEEeEEEEEEE----------CC---EEEEECCCCEEE----------ECCC----
Confidence 34567789999986665667789999999999931 22 346789998864 3333
Q ss_pred CCCccceEEE-cceEEEEE
Q 009549 454 LPISTTTIQA-LTEVEGFY 471 (532)
Q Consensus 454 ~~~r~~tv~a-~t~~~l~~ 471 (532)
.+..+++ .++|.++.
T Consensus 207 ---~~H~~~~~~~~~~~ll 222 (227)
T 3rns_A 207 ---IPHAVEAETENFKMLL 222 (227)
T ss_dssp ---SCEEEECCSSCEEEEE
T ss_pred ---CcEEEEeCCCCEEEEE
Confidence 2556777 77777654
No 90
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=37.38 E-value=1.2e+02 Score=26.46 Aligned_cols=59 Identities=10% Similarity=0.103 Sum_probs=36.0
Q ss_pred CCCeEEEEEeeEEEEeecccceeeecCCC---CCcceeecCCCCeechhhhhhhhhhcCCCCCCCCCCccceEEEcceEE
Q 009549 392 PIDEMVFVLEGKLWSHSARNVTIATSSDG---HNGKKDYLRYGDFCGEELIAWAQQKVDNPSSSNLPISTTTIQALTEVE 468 (532)
Q Consensus 392 ~~~~lyfI~~G~V~v~~~~~~~~~~~~~~---~~~~~~~l~~G~~FGe~~l~~~~~~l~~~~~~~~~~r~~tv~a~t~~~ 468 (532)
..++++++++|.+.+- ..++| ++-.-..+++|++|= +.+. -+.+-++...+.
T Consensus 53 ~~eE~Fy~lkG~m~l~--------v~d~g~~~~~~~dv~i~eGdmfl----------lP~g-------vpHsP~r~~e~v 107 (176)
T 1zvf_A 53 PTPEWFYQKKGSMLLK--------VVDETDAEPKFIDIIINEGDSYL----------LPGN-------VPHSPVRFADTV 107 (176)
T ss_dssp SSCEEEEEEESCEEEE--------EEECSSSSCEEEEEEECTTEEEE----------ECTT-------CCEEEEECTTCE
T ss_pred CCceEEEEEeCEEEEE--------EEcCCCcccceeeEEECCCCEEE----------cCCC-------CCcCCcccCCcE
Confidence 4568999999999993 23333 101356789999885 4433 133444456666
Q ss_pred EEEeCHH
Q 009549 469 GFYLLAS 475 (532)
Q Consensus 469 l~~L~~~ 475 (532)
.+.+.+.
T Consensus 108 ~lviErk 114 (176)
T 1zvf_A 108 GIVVEQD 114 (176)
T ss_dssp EEEEEEC
T ss_pred EEEEEec
Confidence 6666543
No 91
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=36.95 E-value=1.5e+02 Score=23.04 Aligned_cols=46 Identities=26% Similarity=0.226 Sum_probs=31.8
Q ss_pred ceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeec
Q 009549 376 NPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCG 435 (532)
Q Consensus 376 ~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FG 435 (532)
-.....||+.-.. ....++++|++|++.+. . +++ ....+++||.+=
T Consensus 34 ~~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~--------i-~~g---~~~~l~~GD~i~ 79 (101)
T 1o5u_A 34 PIWEKEVSEFDWY--YDTNETCYILEGKVEVT--------T-EDG---KKYVIEKGDLVT 79 (101)
T ss_dssp CEEEECSEEEEEE--CSSCEEEEEEEEEEEEE--------E-TTC---CEEEEETTCEEE
T ss_pred EEEEeCCCccccc--CCceEEEEEEeCEEEEE--------E-CCC---CEEEECCCCEEE
Confidence 3455677776544 34679999999999993 1 212 346799999875
No 92
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=36.91 E-value=41 Score=29.38 Aligned_cols=35 Identities=26% Similarity=0.518 Sum_probs=24.9
Q ss_pred CCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeec
Q 009549 392 PIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCG 435 (532)
Q Consensus 392 ~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FG 435 (532)
..++++++++|.+.+- ..++|+. .-..+++|++|=
T Consensus 54 ~~dE~FyvlkG~m~i~--------v~d~g~~-~~v~l~eGE~f~ 88 (174)
T 1yfu_A 54 PLEEFFYQLRGNAYLN--------LWVDGRR-ERADLKEGDIFL 88 (174)
T ss_dssp SSCEEEEEEESCEEEE--------EEETTEE-EEEEECTTCEEE
T ss_pred CCceEEEEEeeEEEEE--------EEcCCce-eeEEECCCCEEE
Confidence 4679999999999983 2333322 356789999885
No 93
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=34.66 E-value=66 Score=24.20 Aligned_cols=48 Identities=13% Similarity=0.046 Sum_probs=32.2
Q ss_pred cceeEecCCceEeecCCC-CCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeec
Q 009549 375 LNPVFFTDRTRIFREGDP-IDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCG 435 (532)
Q Consensus 375 l~~~~~~~ge~I~~~Gd~-~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FG 435 (532)
+....+.||..+-..-.. .+++++|.+|.+.+.. + + ....+++|+.+=
T Consensus 30 ~~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~---------~-~---~~~~l~~Gd~~~ 78 (105)
T 1v70_A 30 YDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRV---------G-E---EEALLAPGMAAF 78 (105)
T ss_dssp EEEEEECTTCEEEEECCSSCEEEEEEEESCEEEEE---------T-T---EEEEECTTCEEE
T ss_pred EEEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEE---------C-C---EEEEeCCCCEEE
Confidence 345567888877544434 3579999999999832 1 2 245688888763
No 94
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=34.52 E-value=64 Score=24.85 Aligned_cols=48 Identities=17% Similarity=0.199 Sum_probs=32.4
Q ss_pred cceeEecCCceEeec--CCC-CCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeec
Q 009549 375 LNPVFFTDRTRIFRE--GDP-IDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCG 435 (532)
Q Consensus 375 l~~~~~~~ge~I~~~--Gd~-~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FG 435 (532)
+....+.||..+-.. -.. ..++++|++|++.+.. + + ....+++|+.+=
T Consensus 23 ~~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~---------~-~---~~~~l~~Gd~~~ 73 (113)
T 2gu9_A 23 AAEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIV---------D-G---HTQALQAGSLIA 73 (113)
T ss_dssp EEEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEE---------T-T---EEEEECTTEEEE
T ss_pred EEEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEE---------C-C---EEEEeCCCCEEE
Confidence 345567888877544 334 5789999999999832 1 1 245688888764
No 95
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=34.18 E-value=70 Score=24.14 Aligned_cols=50 Identities=22% Similarity=0.222 Sum_probs=33.9
Q ss_pred CeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeechhhhhhhhhhcCCCCCCCCCCccceEEEcceEEEEEeC
Q 009549 394 DEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCGEELIAWAQQKVDNPSSSNLPISTTTIQALTEVEGFYLL 473 (532)
Q Consensus 394 ~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~l~~~~~~l~~~~~~~~~~r~~tv~a~t~~~l~~L~ 473 (532)
.++++|.+|.+.+. .++ ....+++|+.+= +.+. ......+.++|.++.++
T Consensus 51 ~e~~~v~~G~~~~~---------~~~----~~~~l~~Gd~~~----------ip~~-------~~H~~~~~~~~~~l~i~ 100 (102)
T 3d82_A 51 DEVFIVMEGTLQIA---------FRD----QNITLQAGEMYV----------IPKG-------VEHKPMAKEECKIMIIE 100 (102)
T ss_dssp CEEEEEEESEEEEE---------CSS----CEEEEETTEEEE----------ECTT-------CCBEEEEEEEEEEEEEE
T ss_pred cEEEEEEeCEEEEE---------ECC----EEEEEcCCCEEE----------ECCC-------CeEeeEcCCCCEEEEEE
Confidence 78999999999982 122 245688988764 3433 24456666788888765
No 96
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=33.31 E-value=59 Score=25.95 Aligned_cols=50 Identities=18% Similarity=0.154 Sum_probs=33.4
Q ss_pred ccceeEecCCceEeecCCCC-CeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeec
Q 009549 374 CLNPVFFTDRTRIFREGDPI-DEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCG 435 (532)
Q Consensus 374 ~l~~~~~~~ge~I~~~Gd~~-~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FG 435 (532)
.+....+.||..+-..-... .++++|++|++.+. .+++ ....+++|+.+=
T Consensus 40 ~~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~---------~~~~---~~~~l~~Gd~~~ 90 (125)
T 3h8u_A 40 VVVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYH---------QGNG---IVTHLKAGDIAI 90 (125)
T ss_dssp EEEEEEECTTCEECCC-CTTCEEEEEEEECEEEEE---------CSTT---CEEEEETTEEEE
T ss_pred EEEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEE---------ECCC---eEEEeCCCCEEE
Confidence 34556788888875554443 68999999999982 1122 245688888753
No 97
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=32.71 E-value=1.2e+02 Score=24.59 Aligned_cols=43 Identities=19% Similarity=0.142 Sum_probs=28.7
Q ss_pred ecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeec
Q 009549 380 FTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCG 435 (532)
Q Consensus 380 ~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FG 435 (532)
..||..-....+ .+++++|++|++.+ . .++| ....+++||.+-
T Consensus 56 ~~pG~~~~~~~~-~~E~~~Vl~G~~~l--------~-~~~g---~~~~l~~GD~~~ 98 (123)
T 3bcw_A 56 STSGSFQSNTTG-YIEYCHIIEGEARL--------V-DPDG---TVHAVKAGDAFI 98 (123)
T ss_dssp EEEEEEECCCTT-EEEEEEEEEEEEEE--------E-CTTC---CEEEEETTCEEE
T ss_pred ECCCceeeEcCC-CcEEEEEEEEEEEE--------E-ECCC---eEEEECCCCEEE
Confidence 445655543222 37999999999999 2 2233 346799999986
No 98
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=32.16 E-value=99 Score=25.43 Aligned_cols=44 Identities=23% Similarity=0.258 Sum_probs=29.4
Q ss_pred eeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeec
Q 009549 377 PVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCG 435 (532)
Q Consensus 377 ~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FG 435 (532)
...+.||..-... ..+++++|++|++.+.. ++ ....+++||.+-
T Consensus 61 ~~~~~pG~~~~h~--~~~E~~~VLeG~~~l~~----------~g---~~~~l~~GD~i~ 104 (133)
T 2pyt_A 61 FMQWDNAFFPWTL--NYDEIDMVLEGELHVRH----------EG---ETMIAKAGDVMF 104 (133)
T ss_dssp EEEEEEEEEEEEC--SSEEEEEEEEEEEEEEE----------TT---EEEEEETTCEEE
T ss_pred EEEECCCCccccC--CCCEEEEEEECEEEEEE----------CC---EEEEECCCcEEE
Confidence 3456677432322 36799999999999931 23 245799999976
No 99
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=31.76 E-value=37 Score=29.70 Aligned_cols=53 Identities=23% Similarity=0.191 Sum_probs=35.1
Q ss_pred ccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeec
Q 009549 374 CLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCG 435 (532)
Q Consensus 374 ~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FG 435 (532)
.+....+.||...-..-..++++++|++|++.+.. . ..++. ....+++||.+=
T Consensus 42 ~~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v------~-~~~~~--~~~~l~~GDv~~ 94 (178)
T 1dgw_A 42 RVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVL------V-NPDGR--DTYKLDQGDAIK 94 (178)
T ss_dssp EEEEEEECTTEEEEEEEESSEEEEEEEESEEEEEE------E-ETTEE--EEEEEETTEEEE
T ss_pred EEEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEE------E-eCCCc--EEEEECCCCEEE
Confidence 35566788998875553345799999999998832 1 11111 356788888864
No 100
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=31.20 E-value=62 Score=30.59 Aligned_cols=61 Identities=15% Similarity=0.233 Sum_probs=39.4
Q ss_pred CCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeechhhhhhhhhhcCCCCCCCCCCccceEEEcceEEE
Q 009549 390 GDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCGEELIAWAQQKVDNPSSSNLPISTTTIQALTEVEG 469 (532)
Q Consensus 390 Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~l~~~~~~l~~~~~~~~~~r~~tv~a~t~~~l 469 (532)
-+..++++++++|.+.+- ..++|+. .-..+++|++|= +.+. -+.+-++..+|..
T Consensus 48 ~~~~dE~FyqlkG~m~l~--------~~d~g~~-~~V~i~eGemfl----------lP~g-------v~HsP~r~~et~g 101 (286)
T 2qnk_A 48 IEEGEEVFYQLEGDMVLR--------VLEQGKH-RDVVIRQGEIFL----------LPAR-------VPHSPQRFANTVG 101 (286)
T ss_dssp ECSSCEEEEEEESCEEEE--------EEETTEE-EEEEECTTEEEE----------ECTT-------CCEEEEECTTCEE
T ss_pred CCCCCeEEEEEeCeEEEE--------EEeCCce-eeEEECCCeEEE----------eCCC-------CCcCCcccCCeEE
Confidence 345689999999999993 2333322 356789988874 3332 2445556677777
Q ss_pred EEeCHHH
Q 009549 470 FYLLASD 476 (532)
Q Consensus 470 ~~L~~~~ 476 (532)
+.+.+..
T Consensus 102 LviE~~R 108 (286)
T 2qnk_A 102 LVVERRR 108 (286)
T ss_dssp EEEEECC
T ss_pred EEEeecC
Confidence 7776543
No 101
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=30.94 E-value=83 Score=26.39 Aligned_cols=64 Identities=14% Similarity=0.095 Sum_probs=37.3
Q ss_pred CCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeechhhhhhhhhhcCCCCCCCCCCccceEEEcceEEE
Q 009549 390 GDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCGEELIAWAQQKVDNPSSSNLPISTTTIQALTEVEG 469 (532)
Q Consensus 390 Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~l~~~~~~l~~~~~~~~~~r~~tv~a~t~~~l 469 (532)
-+..|++|+|++|++.+...+.. .+..+. ....+++|+++- . |+. -..+-.|...|.+
T Consensus 47 H~~tDE~Fivl~G~l~i~~rd~~----~~~~~d-~~V~l~~Ge~yv----------V-PkG------veH~p~a~~e~~v 104 (140)
T 3d0j_A 47 HHSTDEQFILSAGKAILITAEKE----NDKFNI-ELTLMEKGKVYN----------V-PAE------CWFYSITQKDTKM 104 (140)
T ss_dssp ESSCCEEEEEEESCEEEEEEEEE----TTEEEE-EEEECCTTCCEE----------E-CTT------CEEEEEECTTCEE
T ss_pred CCCCCeEEEEEecEEEEEEecCc----CCCCcc-ceEEecCCCEEE----------e-CCC------ccCcccCCCceEE
Confidence 35568999999999999422110 000001 246788888875 2 221 1335566777887
Q ss_pred EEeCHH
Q 009549 470 FYLLAS 475 (532)
Q Consensus 470 ~~L~~~ 475 (532)
+.+...
T Consensus 105 LLiEp~ 110 (140)
T 3d0j_A 105 MYVQDS 110 (140)
T ss_dssp EEEEES
T ss_pred EEEEeC
Confidence 776544
No 102
>2q1z_B Anti-sigma factor CHRR, transcriptional activator; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_B
Probab=30.33 E-value=89 Score=27.70 Aligned_cols=65 Identities=17% Similarity=0.127 Sum_probs=45.6
Q ss_pred ccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeechhhhhhhhhhcCCCCCCC
Q 009549 374 CLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCGEELIAWAQQKVDNPSSSN 453 (532)
Q Consensus 374 ~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~l~~~~~~l~~~~~~~ 453 (532)
.+....+.||..+-.....+.++.+|++|...- .-..+.+|+++= ..+.
T Consensus 126 ~v~l~~~~pG~~~p~H~H~g~E~~~VL~G~f~d-----------------e~~~~~~Gd~~~----------~p~g---- 174 (195)
T 2q1z_B 126 IARLLWIPGGQAVPDHGHRGLELTLVLQGAFRD-----------------ETDRFGAGDIEI----------ADQE---- 174 (195)
T ss_dssp EEEEEEECTTCBCCCCCCSSCEEEEEEESEEEC-----------------SSSEEETTCEEE----------ECSS----
T ss_pred EEEEEEECCCCCCCCcCCCCeEEEEEEEEEEEC-----------------CcEEECCCeEEE----------eCcC----
Confidence 446777899999988888889999999998553 123588888853 2332
Q ss_pred CCCccceEEE--cceEEEEEe
Q 009549 454 LPISTTTIQA--LTEVEGFYL 472 (532)
Q Consensus 454 ~~~r~~tv~a--~t~~~l~~L 472 (532)
...+..+ .+.|.++..
T Consensus 175 ---~~H~p~a~~~~gc~~l~~ 192 (195)
T 2q1z_B 175 ---LEHTPVAERGLDCICLAA 192 (195)
T ss_dssp ---CCCCCEECSSSCEEEEEE
T ss_pred ---CccCCEeCCCCCEEEEEE
Confidence 2445556 667877654
No 103
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=29.15 E-value=57 Score=25.23 Aligned_cols=68 Identities=16% Similarity=0.150 Sum_probs=39.4
Q ss_pred ecCCceEeecCCCC-CeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeechhhhhhhhhhcCCCCCCCCCCcc
Q 009549 380 FTDRTRIFREGDPI-DEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCGEELIAWAQQKVDNPSSSNLPIST 458 (532)
Q Consensus 380 ~~~ge~I~~~Gd~~-~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~l~~~~~~l~~~~~~~~~~r~ 458 (532)
..||+.... -... .++++|++|.+.+. . +++ ....+++|+.+= +.+. -.
T Consensus 35 ~~~g~~~~H-~H~~~~E~~~Vl~G~~~~~--------~-~~~---~~~~l~~Gd~~~----------ip~~-------~~ 84 (107)
T 2i45_A 35 KLLGDYGWH-THGYSDKVLFAVEGDMAVD--------F-ADG---GSMTIREGEMAV----------VPKS-------VS 84 (107)
T ss_dssp EEEEECCCB-CC--CCEEEEESSSCEEEE--------E-TTS---CEEEECTTEEEE----------ECTT-------CC
T ss_pred ECCCCCcce-eCCCCCEEEEEEeCEEEEE--------E-CCC---cEEEECCCCEEE----------ECCC-------Cc
Confidence 345554322 2334 79999999999983 1 221 245789998874 3333 23
Q ss_pred ceEEEcceEEEEEeCHHHH
Q 009549 459 TTIQALTEVEGFYLLASDL 477 (532)
Q Consensus 459 ~tv~a~t~~~l~~L~~~~f 477 (532)
...++.+.|.++.++....
T Consensus 85 H~~~~~~~~~~l~i~~~~~ 103 (107)
T 2i45_A 85 HRPRSENGCSLVLIELSDP 103 (107)
T ss_dssp EEEEEEEEEEEEEEECC--
T ss_pred EeeEeCCCeEEEEEECCCc
Confidence 4455556788887765543
No 104
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=28.69 E-value=41 Score=27.36 Aligned_cols=43 Identities=14% Similarity=0.193 Sum_probs=29.1
Q ss_pred ecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeec
Q 009549 380 FTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCG 435 (532)
Q Consensus 380 ~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FG 435 (532)
..||..-+.. +..+++++|++|.+.+ . .++| ....+++||.|-
T Consensus 49 ~tPG~~~~~~-~~~~E~~~iLeG~~~l--------t-~ddG---~~~~l~aGD~~~ 91 (116)
T 3es4_A 49 AEPGIYNYAG-RDLEETFVVVEGEALY--------S-QADA---DPVKIGPGSIVS 91 (116)
T ss_dssp ECSEEEEECC-CSEEEEEEEEECCEEE--------E-ETTC---CCEEECTTEEEE
T ss_pred cCCceeECee-CCCcEEEEEEEeEEEE--------E-eCCC---eEEEECCCCEEE
Confidence 3455554443 3335999999999999 2 2334 356799999986
No 105
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=28.58 E-value=72 Score=29.36 Aligned_cols=50 Identities=14% Similarity=0.089 Sum_probs=36.5
Q ss_pred hccceeEecCCceEee-cCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeec
Q 009549 373 DCLNPVFFTDRTRIFR-EGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCG 435 (532)
Q Consensus 373 ~~l~~~~~~~ge~I~~-~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FG 435 (532)
..+....+.||..+-. +-...++.++|++|+..+. .++ ....+++||++-
T Consensus 165 ~~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~----------~~~---~~~~l~~GD~~~ 215 (246)
T 1sfn_A 165 FMVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYK----------LEE---NYYPVTAGDIIW 215 (246)
T ss_dssp EEEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEE----------ETT---EEEEEETTCEEE
T ss_pred eEEEEEEECCCCccCcccCCCceEEEEEEECEEEEE----------ECC---EEEEcCCCCEEE
Confidence 3456778899988843 4455678999999999982 122 356799999875
No 106
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=27.19 E-value=25 Score=27.37 Aligned_cols=33 Identities=6% Similarity=-0.107 Sum_probs=23.7
Q ss_pred ccceeEecCCceEeecCCC-CCeEEEEEeeEEEE
Q 009549 374 CLNPVFFTDRTRIFREGDP-IDEMVFVLEGKLWS 406 (532)
Q Consensus 374 ~l~~~~~~~ge~I~~~Gd~-~~~lyfI~~G~V~v 406 (532)
+.++..+.||+.+-.+-.. ....|+|.+|.+.+
T Consensus 18 rV~r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v 51 (98)
T 3lag_A 18 RVTEWRLPPGSATGHHTHGMDYVVVPMADGEMTI 51 (98)
T ss_dssp EEEEEEECTTEECCSEECCSCEEEEESSCBC-CE
T ss_pred EEEEEEECCCCccCcEECCCcEEEEEEeccEEEE
Confidence 3567788999998544443 45788889999988
No 107
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=27.16 E-value=93 Score=26.67 Aligned_cols=48 Identities=13% Similarity=-0.071 Sum_probs=32.7
Q ss_pred cceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeec
Q 009549 375 LNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCG 435 (532)
Q Consensus 375 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FG 435 (532)
+....+.||..+-..-....++++|++|++.+.. + + ....+++|+.+=
T Consensus 58 ~~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i---------~-~---~~~~l~~Gd~i~ 105 (167)
T 3ibm_A 58 TRYFEVEPGGYTTLERHEHTHVVMVVRGHAEVVL---------D-D---RVEPLTPLDCVY 105 (167)
T ss_dssp EEEEEECTTCBCCCBBCSSCEEEEEEESEEEEEE---------T-T---EEEEECTTCEEE
T ss_pred EEEEEECCCCCCCCccCCCcEEEEEEeCEEEEEE---------C-C---EEEEECCCCEEE
Confidence 3455677887764444456899999999999832 1 1 245688888764
No 108
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=26.62 E-value=1.5e+02 Score=25.20 Aligned_cols=31 Identities=29% Similarity=0.368 Sum_probs=23.2
Q ss_pred CCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeec
Q 009549 392 PIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCG 435 (532)
Q Consensus 392 ~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FG 435 (532)
..+++++|++|++++. .+| ....+++||.+=
T Consensus 83 ~~eE~~yVLeG~~~l~----------i~g---~~~~l~~GD~i~ 113 (151)
T 4axo_A 83 NYDEIDYVIDGTLDII----------IDG---RKVSASSGELIF 113 (151)
T ss_dssp SSEEEEEEEEEEEEEE----------ETT---EEEEEETTCEEE
T ss_pred CCcEEEEEEEeEEEEE----------ECC---EEEEEcCCCEEE
Confidence 3578999999999992 133 356799999874
No 109
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=26.10 E-value=95 Score=28.17 Aligned_cols=46 Identities=13% Similarity=0.039 Sum_probs=30.6
Q ss_pred eEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeec
Q 009549 378 VFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCG 435 (532)
Q Consensus 378 ~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FG 435 (532)
..+.||..+=..-...+++|+|++|.++... +++ ....+++|+.+=
T Consensus 137 v~l~PG~~yP~HsHp~EEiy~VLsG~~e~~v---------~~g---~~~~l~pGd~v~ 182 (217)
T 4b29_A 137 GYWGPGLDYGWHEHLPEELYSVVSGRALFHL---------RNA---PDLMLEPGQTRF 182 (217)
T ss_dssp EEECSSCEEEEEECSSEEEEEEEEECEEEEE---------TTS---CCEEECTTCEEE
T ss_pred EEECCCCcCCCCCCCCceEEEEEeCCEEEEE---------CCC---CEEecCCCCEEE
Confidence 4456666554444567899999999988831 222 356788888763
No 110
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=25.83 E-value=83 Score=27.40 Aligned_cols=48 Identities=21% Similarity=0.158 Sum_probs=31.5
Q ss_pred cceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCee
Q 009549 375 LNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFC 434 (532)
Q Consensus 375 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~F 434 (532)
+....+.||...-.......+..+|++|++++.. +++ ....+++||.+
T Consensus 81 ~~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~l---------d~g---e~~~L~~GDsi 128 (172)
T 3es1_A 81 IRVVDMLPGKESPMHRTNSIDYGIVLEGEIELEL---------DDG---AKRTVRQGGII 128 (172)
T ss_dssp EEEEEECTTCBCCCBCCSEEEEEEEEESCEEEEC---------GGG---CEEEECTTCEE
T ss_pred EEEEEECCCCCCCCeecCceEEEEEEeCEEEEEE---------CCC---eEEEECCCCEE
Confidence 3445677776554333445678899999999932 212 24568999987
No 111
>3o14_A Anti-ecfsigma factor, CHRR; cupin, structural genomics, joint center for structura genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Marinobacter aquaeolei}
Probab=25.31 E-value=2.1e+02 Score=25.90 Aligned_cols=74 Identities=11% Similarity=0.065 Sum_probs=48.8
Q ss_pred hcCcccccCCHHHHHHHHhccceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCee
Q 009549 355 RNVKEFERWGEKELVDLSDCLNPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFC 434 (532)
Q Consensus 355 ~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~F 434 (532)
+..+++++-. ........+||..+-....-+.++ ||++|.+.- .-..+.+|+++
T Consensus 136 ~~~~L~~~~~--------E~v~l~r~~~G~~~~~~~hgG~Ei-lVL~G~~~d-----------------~~~~~~~GsWl 189 (223)
T 3o14_A 136 STSLLHEDER--------ETVTHRKLEPGANLTSEAAGGIEV-LVLDGDVTV-----------------NDEVLGRNAWL 189 (223)
T ss_dssp EEEEEEECSS--------CEEEEEEECTTCEEEECCSSCEEE-EEEEEEEEE-----------------TTEEECTTEEE
T ss_pred EEEEEecCCC--------cEEEEEEECCCCccCCCCCCcEEE-EEEEeEEEE-----------------CCceECCCeEE
Confidence 4556665432 234557779999998877756676 999999876 12468888885
Q ss_pred chhhhhhhhhhcCCCCCCCCCCccceEEE-cceEEEEE
Q 009549 435 GEELIAWAQQKVDNPSSSNLPISTTTIQA-LTEVEGFY 471 (532)
Q Consensus 435 Ge~~l~~~~~~l~~~~~~~~~~r~~tv~a-~t~~~l~~ 471 (532)
= +.+. +..+..| .+.|.+|.
T Consensus 190 R----------~P~g-------s~h~~~ag~~g~~i~~ 210 (223)
T 3o14_A 190 R----------LPEG-------EALSATAGARGAKIWM 210 (223)
T ss_dssp E----------ECTT-------CCEEEEEEEEEEEEEE
T ss_pred E----------eCCC-------CccCcEECCCCeEEEE
Confidence 4 3333 3456666 66777664
No 112
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=25.24 E-value=2.5e+02 Score=25.58 Aligned_cols=45 Identities=18% Similarity=0.166 Sum_probs=31.4
Q ss_pred ceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeec
Q 009549 376 NPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCG 435 (532)
Q Consensus 376 ~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FG 435 (532)
....+.||...-..- .+++.+|++|++++.. ++ ....+++||++=
T Consensus 53 ~~~~l~Pg~~~~~~~--~ee~~~Vl~G~~~~~~----------~~---~~~~l~~Gd~~~ 97 (246)
T 1sfn_A 53 FTAEMPAGAQATESV--YQRFAFVLSGEVDVAV----------GG---ETRTLREYDYVY 97 (246)
T ss_dssp EEEEECTTCEEECCS--SEEEEEEEEEEEEEEC----------SS---CEEEECTTEEEE
T ss_pred EEEEECCCCcCCCCc--eeEEEEEEECEEEEEE----------CC---EEEEECCCCEEE
Confidence 345667887664442 6789999999999931 22 246799999875
No 113
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=23.68 E-value=1.3e+02 Score=28.15 Aligned_cols=70 Identities=9% Similarity=0.098 Sum_probs=43.3
Q ss_pred ceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeechhhhhhhhhhcCCCCCCCCC
Q 009549 376 NPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCGEELIAWAQQKVDNPSSSNLP 455 (532)
Q Consensus 376 ~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~l~~~~~~l~~~~~~~~~ 455 (532)
-...+.||..--......+++.||++|++++. .++++ ...+++|+++= +.+.
T Consensus 73 ~lv~l~PGg~s~~~~h~~EEfiyVleG~l~l~---------l~~g~---~~~L~~Gds~y----------~p~~------ 124 (266)
T 4e2q_A 73 YLAKMKEMSSSGLPPQDIERLIFVVEGAVTLT---------NTSSS---SKKLTVDSYAY----------LPPN------ 124 (266)
T ss_dssp EEEEECSSEECCCCCTTEEEEEEEEEECEEEE---------C--CC---CEEECTTEEEE----------ECTT------
T ss_pred EEEEECcCCcCCCCCCCCeEEEEEEEEEEEEE---------ECCCc---EEEEcCCCEEE----------ECCC------
Confidence 35567777764223344678999999999993 12132 35689988864 3332
Q ss_pred CccceEEEcceEEEEEeCH
Q 009549 456 ISTTTIQALTEVEGFYLLA 474 (532)
Q Consensus 456 ~r~~tv~a~t~~~l~~L~~ 474 (532)
...+.+..+.++++.+.+
T Consensus 125 -~~H~~~N~~~Ar~l~V~k 142 (266)
T 4e2q_A 125 -FHHSLDCVESATLVVFER 142 (266)
T ss_dssp -CCCEEEESSCEEEEEEEE
T ss_pred -CCEEEEeCCCEEEEEEEe
Confidence 234555567788877744
No 114
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=23.60 E-value=94 Score=24.34 Aligned_cols=47 Identities=4% Similarity=0.114 Sum_probs=29.0
Q ss_pred eeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeec
Q 009549 377 PVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCG 435 (532)
Q Consensus 377 ~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FG 435 (532)
...+.||...-..-....++++|++|.+.+.. +++ ....+++|+.+=
T Consensus 31 ~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i----------~~~--~~~~l~~Gd~i~ 77 (117)
T 2b8m_A 31 HIVLPRGEQMPKHYSNSYVHLIIIKGEMTLTL----------EDQ--EPHNYKEGNIVY 77 (117)
T ss_dssp EEEEETTCBCCCEECSSCEEEEEEESEEEEEE----------TTS--CCEEEETTCEEE
T ss_pred EEEECCCCcCCCEeCCCcEEEEEEeCEEEEEE----------CCE--EEEEeCCCCEEE
Confidence 34556776653223345689999999999831 221 222688888764
No 115
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=23.32 E-value=2.4e+02 Score=21.22 Aligned_cols=67 Identities=15% Similarity=0.102 Sum_probs=40.2
Q ss_pred ceeEecCCceEeecCCCC-CeE-EEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeechhhhhhhhhhcCCCCCCC
Q 009549 376 NPVFFTDRTRIFREGDPI-DEM-VFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCGEELIAWAQQKVDNPSSSN 453 (532)
Q Consensus 376 ~~~~~~~ge~I~~~Gd~~-~~l-yfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~l~~~~~~l~~~~~~~ 453 (532)
....+.||..+-..-... .++ ++|++|.+.+.. +++ ....+++|+.+= +.+.
T Consensus 36 ~~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~---------~~~---~~~~l~~Gd~~~----------ip~~---- 89 (110)
T 2q30_A 36 VSFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVG---------DGD---AVIPAPRGAVLV----------APIS---- 89 (110)
T ss_dssp EEEEECTTCEEEEECCSSSCEEEEEEEESCEEEEC---------GGG---CEEEECTTEEEE----------EETT----
T ss_pred EEEEECCCCcCCcccCCCCccEEEEEEeCEEEEEe---------CCC---EEEEECCCCEEE----------eCCC----
Confidence 345567888775443332 466 899999999832 111 245688888764 3332
Q ss_pred CCCccceEEEcceEEEEE
Q 009549 454 LPISTTTIQALTEVEGFY 471 (532)
Q Consensus 454 ~~~r~~tv~a~t~~~l~~ 471 (532)
....+++.+++.++.
T Consensus 90 ---~~H~~~~~~~~~~l~ 104 (110)
T 2q30_A 90 ---TPHGVRAVTDMKVLV 104 (110)
T ss_dssp ---SCEEEEESSSEEEEE
T ss_pred ---CcEEEEEcCCcEEEE
Confidence 244566666666544
No 116
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=23.20 E-value=89 Score=29.41 Aligned_cols=50 Identities=26% Similarity=0.187 Sum_probs=36.7
Q ss_pred hccceeEecCCceEee-cCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeec
Q 009549 373 DCLNPVFFTDRTRIFR-EGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCG 435 (532)
Q Consensus 373 ~~l~~~~~~~ge~I~~-~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FG 435 (532)
..+....+.||..|-. +-..-++.++|++|+..+. .++ ....+++||++-
T Consensus 191 ~~~~~~~l~pG~~i~~~~~h~~e~~~~il~G~~~~~----------~~~---~~~~v~~GD~~~ 241 (278)
T 1sq4_A 191 MHVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYR----------LNQ---DWVEVEAGDFMW 241 (278)
T ss_dssp EEEEEEEECSSSEESCCCCCSEEEEEEEEECEEEEE----------ETT---EEEEEETTCEEE
T ss_pred eEEEEEEECCCCCcCCCCCCCccEEEEEEeCEEEEE----------ECC---EEEEeCCCCEEE
Confidence 4567788999999954 4444568899999999982 222 356789999864
No 117
>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A {Antonospora locustae}
Probab=22.93 E-value=1.1e+02 Score=26.71 Aligned_cols=40 Identities=15% Similarity=0.192 Sum_probs=31.1
Q ss_pred hhcCcccccCCHHHHHHHHhccceeEecCCceEeecCCCCCeEEEE
Q 009549 354 LRNVKEFERWGEKELVDLSDCLNPVFFTDRTRIFREGDPIDEMVFV 399 (532)
Q Consensus 354 l~~i~~F~~~s~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI 399 (532)
+-++|.|.+++.....+++.. .+||+|+++...++++-+.
T Consensus 11 ~I~HP~F~n~s~~qAe~~L~~------~~G~~liRPSsk~~~ltit 50 (178)
T 2xp1_A 11 FYKHPLFKNFNVTESENYLRS------STDDFLIRKGSRHGYCVLV 50 (178)
T ss_dssp GGGSTTEECCCHHHHHHHHHH------SSCCEEEEECSSTTEEEEE
T ss_pred eccCCCcCCCCHHHHHHHHhc------CCCCEEEeecCCCCcEEEE
Confidence 347899999998887777777 3699999998877764443
No 118
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=22.07 E-value=21 Score=23.66 Aligned_cols=19 Identities=11% Similarity=0.321 Sum_probs=15.3
Q ss_pred HHHHHHhCChhHHHHHHHH
Q 009549 330 VVNLVNNLPQGLRSQVKGE 348 (532)
Q Consensus 330 ~~~il~~Lp~~Lr~~i~~~ 348 (532)
+.++++.||..+|.|++..
T Consensus 17 D~eVF~~LP~dIQ~Ells~ 35 (48)
T 2kwv_A 17 DQEVFKQLPADIQEEILSG 35 (48)
T ss_dssp CGGGTTTSCHHHHHHHTTC
T ss_pred CHHHHHHCcHHHHHHHHhc
Confidence 4678999999999987643
No 119
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=22.06 E-value=85 Score=26.66 Aligned_cols=46 Identities=11% Similarity=-0.066 Sum_probs=30.1
Q ss_pred eeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeec
Q 009549 377 PVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCG 435 (532)
Q Consensus 377 ~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FG 435 (532)
...+.||..+-..-....++++|++|++++.. + + ....+++|+.+=
T Consensus 48 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v---------~-g---~~~~l~~Gd~i~ 93 (156)
T 3kgz_A 48 YFEVDEGGYSTLERHAHVHAVMIHRGHGQCLV---------G-E---TISDVAQGDLVF 93 (156)
T ss_dssp EEEEEEEEECCCBBCSSCEEEEEEEEEEEEEE---------T-T---EEEEEETTCEEE
T ss_pred EEEECCCCccCceeCCCcEEEEEEeCEEEEEE---------C-C---EEEEeCCCCEEE
Confidence 44456776654444445789999999999932 1 2 245678888763
No 120
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=22.03 E-value=82 Score=27.09 Aligned_cols=47 Identities=11% Similarity=-0.051 Sum_probs=30.9
Q ss_pred ceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeec
Q 009549 376 NPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCG 435 (532)
Q Consensus 376 ~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FG 435 (532)
....+.||..+-..-....++++|++|++.+.. ++ ....+++|+.+=
T Consensus 56 ~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v----------~g---~~~~l~~GD~i~ 102 (166)
T 3jzv_A 56 RYFEVGPGGHSTLERHQHAHGVMILKGRGHAMV----------GR---AVSAVAPYDLVT 102 (166)
T ss_dssp EEEEEEEEEECCCBBCSSCEEEEEEEECEEEEE----------TT---EEEEECTTCEEE
T ss_pred EEEEECCCCccCceeCCCcEEEEEEeCEEEEEE----------CC---EEEEeCCCCEEE
Confidence 344567777664444455789999999999832 12 245678888763
No 121
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21
Probab=21.40 E-value=1.3e+02 Score=24.99 Aligned_cols=32 Identities=9% Similarity=-0.096 Sum_probs=26.5
Q ss_pred cceeEecCCceEeecCCCCCeEEEEEeeEEEE
Q 009549 375 LNPVFFTDRTRIFREGDPIDEMVFVLEGKLWS 406 (532)
Q Consensus 375 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v 406 (532)
+....+.||..+-.......+.++|++|+...
T Consensus 46 ~~~~~~~pG~~~p~H~H~~~ee~~VL~G~~~~ 77 (145)
T 2o1q_A 46 TAIFDCPAGSSFAAHVHVGPGEYFLTKGKMDV 77 (145)
T ss_dssp EEEEEECTTEEECCEEESSCEEEEEEEEEEEE
T ss_pred EEEEEECCCCCCCccCCCCCEEEEEEEeEEEE
Confidence 55677899999977666677889999999987
No 122
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=20.96 E-value=99 Score=25.10 Aligned_cols=47 Identities=19% Similarity=0.235 Sum_probs=31.2
Q ss_pred ceeEecCCceEeecCCC-CCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeec
Q 009549 376 NPVFFTDRTRIFREGDP-IDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCG 435 (532)
Q Consensus 376 ~~~~~~~ge~I~~~Gd~-~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FG 435 (532)
....+.||..+-..-.. ..++++|++|++.+.. ++ ....+++|+.+=
T Consensus 60 ~~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i----------~~---~~~~l~~Gd~i~ 107 (133)
T 1o4t_A 60 ARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHD----------NG---KDVPIKAGDVCF 107 (133)
T ss_dssp EEEEECTTCEEEEEECCSEEEEEEEEESEEEEEE----------TT---EEEEEETTEEEE
T ss_pred EEEEECCCCccCceECCCccEEEEEEeCEEEEEE----------CC---EEEEeCCCcEEE
Confidence 34567888776433333 3689999999999832 12 345688888763
No 123
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=20.64 E-value=68 Score=32.10 Aligned_cols=48 Identities=21% Similarity=0.165 Sum_probs=33.8
Q ss_pred ceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeec
Q 009549 376 NPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCG 435 (532)
Q Consensus 376 ~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FG 435 (532)
....+.||+.+-..-....++|||++|+-.. ... +| ....+++||++=
T Consensus 126 ~~~~l~PG~~~~~HrH~~~ev~~IleG~G~~--------t~v-~G---~~~~~~~GD~i~ 173 (394)
T 3bu7_A 126 GIQTMKAGERAGAHRHAASALRFIMEGSGAY--------TIV-DG---HKVELGANDFVL 173 (394)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEECSCEE--------EEE-TT---EEEEECTTCEEE
T ss_pred EEEEECCCCCcCCccCCcceEEEEEEeeEEE--------EEE-CC---EEEEEcCCCEEE
Confidence 6778999999966555667899999998754 111 22 345678888764
No 124
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=20.57 E-value=73 Score=24.20 Aligned_cols=50 Identities=16% Similarity=0.118 Sum_probs=31.0
Q ss_pred cceeEecCCceEeecCCCCC-eEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeec
Q 009549 375 LNPVFFTDRTRIFREGDPID-EMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCG 435 (532)
Q Consensus 375 l~~~~~~~ge~I~~~Gd~~~-~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FG 435 (532)
+....+.||...-..-.... ++++|++|.+.+.. +++. ....+++|+.+=
T Consensus 20 ~~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~---------~~g~--~~~~l~~Gd~~~ 70 (97)
T 2fqp_A 20 VTEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLET---------PEGS--VTSQLTRGVSYT 70 (97)
T ss_dssp EEEEEECTTCBCCSEECCSCEEEEESSCEEEEEEE---------TTEE--EEEEECTTCCEE
T ss_pred EEEEEECCCCCCCCEECCCCcEEEEEeecEEEEEe---------CCCC--EEEEEcCCCEEE
Confidence 34556788876532223333 59999999999832 2210 135688888874
No 125
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=20.52 E-value=1.5e+02 Score=24.56 Aligned_cols=48 Identities=21% Similarity=0.319 Sum_probs=31.2
Q ss_pred ceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeec
Q 009549 376 NPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCG 435 (532)
Q Consensus 376 ~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FG 435 (532)
....+.||..+-..-....++++|++|.+.+.. ++ + ....+++|+.+=
T Consensus 51 ~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~---------~~-~--~~~~l~~Gd~i~ 98 (147)
T 2f4p_A 51 YDVVFEPGARTHWHSHPGGQILIVTRGKGFYQE---------RG-K--PARILKKGDVVE 98 (147)
T ss_dssp EEEEECTTCEECSEECTTCEEEEEEEEEEEEEE---------TT-S--CCEEEETTCEEE
T ss_pred EEEEECCCCccCceECCCceEEEEEeCEEEEEE---------CC-E--EEEEECCCCEEE
Confidence 455667887764333344789999999999832 22 1 125688888764
No 126
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=20.49 E-value=1.1e+02 Score=24.57 Aligned_cols=47 Identities=21% Similarity=0.214 Sum_probs=30.5
Q ss_pred ceeEecCCceEeecCCCCCeEEEEEeeEEEEeecccceeeecCCCCCcceeecCCCCeec
Q 009549 376 NPVFFTDRTRIFREGDPIDEMVFVLEGKLWSHSARNVTIATSSDGHNGKKDYLRYGDFCG 435 (532)
Q Consensus 376 ~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~~~~~~~~~~~~~~l~~G~~FG 435 (532)
....+.||...-..-....++++|++|.+.+.. + + ....+++|+.+=
T Consensus 51 ~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i---------~-~---~~~~l~~Gd~i~ 97 (126)
T 1vj2_A 51 RLFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLK---------E-Q---GEETVEEGFYIF 97 (126)
T ss_dssp EEEEEEEEEEEEEECCSSCEEEEEEESEEEEEC---------S-S---CEEEEETTEEEE
T ss_pred EEEEECCCCcCCceeCCCcEEEEEEEeEEEEEE---------C-C---EEEEECCCCEEE
Confidence 344566676654434446799999999999831 1 2 235678888763
Done!