Query 009550
Match_columns 532
No_of_seqs 377 out of 2860
Neff 7.9
Searched_HMMs 46136
Date Thu Mar 28 14:28:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009550.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009550hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02339 NAD+ synthase (glutam 100.0 2E-106 3E-111 895.6 55.7 532 1-532 1-532 (700)
2 KOG2303 Predicted NAD synthase 100.0 1E-104 2E-109 797.5 36.9 529 1-530 2-530 (706)
3 PRK02628 nadE NAD synthetase; 100.0 5.3E-86 1.2E-90 734.0 50.7 471 2-532 11-499 (679)
4 PRK13981 NAD synthetase; Provi 100.0 2.2E-80 4.8E-85 677.0 46.9 409 4-532 1-410 (540)
5 cd07570 GAT_Gln-NAD-synth Glut 100.0 1.3E-47 2.9E-52 382.2 28.0 252 5-287 1-253 (261)
6 TIGR03381 agmatine_aguB N-carb 100.0 1.1E-44 2.4E-49 364.6 26.9 253 4-287 1-268 (279)
7 cd07587 ML_beta-AS mammalian-l 100.0 1.9E-44 4.1E-49 373.6 25.9 258 2-288 62-350 (363)
8 PRK10438 C-N hydrolase family 100.0 6E-44 1.3E-48 354.8 27.0 246 1-289 1-249 (256)
9 cd07586 nitrilase_8 Uncharacte 100.0 5.4E-44 1.2E-48 357.8 26.6 251 5-288 1-258 (269)
10 cd07576 R-amidase_like Pseudom 100.0 2.9E-44 6.3E-49 356.6 24.3 247 5-288 1-249 (254)
11 cd07568 ML_beta-AS_like mammal 100.0 1.7E-43 3.6E-48 357.7 27.8 256 2-288 2-274 (287)
12 COG0388 Predicted amidohydrola 100.0 9.3E-43 2E-47 349.9 25.8 255 3-287 2-259 (274)
13 PLN00202 beta-ureidopropionase 100.0 1.4E-42 3E-47 363.2 27.3 259 2-289 85-372 (405)
14 PLN02747 N-carbamolyputrescine 100.0 1.5E-42 3.4E-47 352.1 26.1 256 2-287 5-278 (296)
15 cd07569 DCase N-carbamyl-D-ami 100.0 2.2E-42 4.7E-47 352.0 25.5 252 2-283 2-284 (302)
16 cd07583 nitrilase_5 Uncharacte 100.0 2.7E-42 5.9E-47 342.4 25.5 246 5-288 1-250 (253)
17 cd07573 CPA N-carbamoylputresc 100.0 4.4E-42 9.4E-47 346.7 27.3 253 4-287 1-271 (284)
18 cd07572 nit Nit1, Nit 2, and r 100.0 3.7E-42 8.1E-47 343.6 24.8 249 5-288 1-262 (265)
19 cd07580 nitrilase_2 Uncharacte 100.0 2.1E-42 4.5E-47 346.3 22.8 244 5-283 1-254 (268)
20 cd07581 nitrilase_3 Uncharacte 100.0 8E-42 1.7E-46 339.4 23.8 247 6-289 1-253 (255)
21 cd07564 nitrilases_CHs Nitrila 100.0 1E-41 2.3E-46 346.1 24.8 255 4-289 1-284 (297)
22 cd07565 aliphatic_amidase alip 100.0 1.8E-41 3.9E-46 342.8 26.3 246 4-286 1-259 (291)
23 cd07584 nitrilase_6 Uncharacte 100.0 2E-41 4.2E-46 337.2 26.0 246 5-289 1-255 (258)
24 PLN02504 nitrilase 100.0 1.8E-41 3.9E-46 349.8 25.5 253 1-289 22-312 (346)
25 cd07578 nitrilase_1_R1 First n 100.0 1.1E-41 2.4E-46 339.1 22.6 246 4-287 1-251 (258)
26 cd07585 nitrilase_7 Uncharacte 100.0 1.9E-41 4.1E-46 337.9 24.2 242 5-283 1-247 (261)
27 cd07579 nitrilase_1_R2 Second 100.0 4E-41 8.6E-46 338.5 24.5 236 5-279 1-255 (279)
28 cd07575 Xc-1258_like Xanthomon 100.0 6.5E-41 1.4E-45 332.5 25.2 245 4-289 1-247 (252)
29 PLN02798 nitrilase 100.0 1.6E-40 3.5E-45 335.7 26.0 253 2-287 9-274 (286)
30 cd07567 biotinidase_like bioti 100.0 9.3E-41 2E-45 337.0 22.8 238 4-278 1-279 (299)
31 cd07577 Ph0642_like Pyrococcus 100.0 2E-40 4.4E-45 330.2 22.4 237 5-281 1-243 (259)
32 cd07197 nitrilase Nitrilase su 100.0 2.7E-39 5.8E-44 320.1 27.2 240 6-284 1-246 (253)
33 cd07582 nitrilase_4 Uncharacte 100.0 1.3E-39 2.9E-44 330.3 25.3 254 5-285 2-284 (294)
34 cd07574 nitrilase_Rim1_like Un 100.0 2.4E-39 5.2E-44 326.1 23.3 249 4-285 1-269 (280)
35 PRK13287 amiF formamidase; Pro 100.0 2.6E-38 5.6E-43 324.6 26.3 248 2-286 12-271 (333)
36 PRK13286 amiE acylamide amidoh 100.0 2.5E-38 5.5E-43 325.2 24.1 245 3-286 12-272 (345)
37 cd07571 ALP_N-acyl_transferase 100.0 4E-37 8.6E-42 308.3 20.6 223 4-276 1-251 (270)
38 cd07566 ScNTA1_like Saccharomy 100.0 1.6E-35 3.4E-40 299.3 21.1 229 5-248 1-264 (295)
39 KOG0807 Carbon-nitrogen hydrol 100.0 3.8E-36 8.2E-41 279.4 14.2 255 4-289 16-282 (295)
40 COG0171 NadE NAD synthase [Coe 100.0 5.7E-35 1.2E-39 286.2 14.8 155 329-532 6-160 (268)
41 PF02540 NAD_synthase: NAD syn 100.0 1.7E-34 3.7E-39 282.7 14.3 143 332-532 2-144 (242)
42 PRK00768 nadE NAD synthetase; 100.0 4.8E-34 1E-38 280.0 16.4 158 326-532 17-175 (268)
43 KOG0806 Carbon-nitrogen hydrol 100.0 1.6E-31 3.5E-36 261.0 15.0 255 2-290 12-286 (298)
44 PF00795 CN_hydrolase: Carbon- 100.0 1.4E-30 3E-35 246.1 12.4 176 5-200 1-186 (186)
45 PRK00302 lnt apolipoprotein N- 100.0 1.1E-29 2.4E-34 276.0 18.4 224 3-275 219-470 (505)
46 TIGR00546 lnt apolipoprotein N 100.0 9.6E-30 2.1E-34 268.1 15.6 204 3-253 159-391 (391)
47 PRK00876 nadE NAD synthetase; 100.0 2.3E-29 4.9E-34 254.6 15.9 160 329-532 13-212 (326)
48 PTZ00323 NAD+ synthase; Provis 100.0 3.7E-28 8.1E-33 242.7 16.6 162 325-532 24-186 (294)
49 cd00553 NAD_synthase NAD+ synt 100.0 8.6E-28 1.9E-32 237.6 16.4 150 329-532 4-153 (248)
50 PRK13980 NAD synthetase; Provi 99.9 1.5E-27 3.2E-32 237.9 15.7 145 329-532 11-155 (265)
51 KOG0805 Carbon-nitrogen hydrol 99.9 1.9E-26 4.1E-31 215.2 20.5 246 1-282 15-298 (337)
52 KOG0808 Carbon-nitrogen hydrol 99.9 6.5E-25 1.4E-29 206.2 18.5 250 2-283 72-355 (387)
53 PRK12291 apolipoprotein N-acyl 99.9 5.2E-25 1.1E-29 232.4 19.6 188 4-235 195-406 (418)
54 TIGR00552 nadE NAD+ synthetase 99.9 4.4E-22 9.6E-27 197.0 15.8 147 331-532 5-151 (250)
55 COG0815 Lnt Apolipoprotein N-a 99.8 2.6E-20 5.6E-25 200.4 18.4 228 3-262 227-471 (518)
56 PRK13825 conjugal transfer pro 99.8 3.7E-20 7.9E-25 193.0 16.0 172 21-231 207-387 (388)
57 PF03054 tRNA_Me_trans: tRNA m 99.0 1.3E-09 2.8E-14 112.2 9.3 115 349-520 1-127 (356)
58 COG1606 ATP-utilizing enzymes 98.9 2.5E-09 5.4E-14 102.5 8.4 75 337-450 8-82 (269)
59 TIGR00268 conserved hypothetic 98.9 7.9E-09 1.7E-13 102.5 12.1 75 337-451 3-77 (252)
60 cd01996 Alpha_ANH_like_III Thi 98.9 1.6E-08 3.5E-13 92.5 12.2 119 350-528 3-122 (154)
61 COG0482 TrmU Predicted tRNA(5- 98.9 8.4E-09 1.8E-13 104.8 10.2 81 348-466 3-93 (356)
62 TIGR03573 WbuX N-acetyl sugar 98.8 9.9E-08 2.1E-12 98.9 14.2 131 339-528 48-180 (343)
63 KOG2805 tRNA (5-methylaminomet 98.7 6E-08 1.3E-12 95.1 10.1 120 348-527 5-139 (377)
64 PRK14665 mnmA tRNA-specific 2- 98.7 9.5E-08 2.1E-12 99.1 11.6 66 349-452 6-73 (360)
65 PRK14664 tRNA-specific 2-thiou 98.7 2.3E-07 5E-12 96.1 12.5 111 349-520 6-119 (362)
66 TIGR00884 guaA_Cterm GMP synth 98.6 2.3E-07 5E-12 94.5 12.0 75 337-451 8-83 (311)
67 cd01990 Alpha_ANH_like_I This 98.6 2.5E-07 5.3E-12 88.7 10.0 63 351-450 1-63 (202)
68 PRK01565 thiamine biosynthesis 98.6 1.8E-07 3.8E-12 98.8 9.4 106 349-518 177-288 (394)
69 PLN02347 GMP synthetase 98.5 3E-07 6.6E-12 100.0 10.4 74 339-449 219-294 (536)
70 cd01993 Alpha_ANH_like_II This 98.5 4.8E-07 1E-11 85.1 10.3 113 350-518 1-115 (185)
71 PRK00143 mnmA tRNA-specific 2- 98.5 9.6E-07 2.1E-11 91.6 12.2 66 349-452 1-76 (346)
72 cd01998 tRNA_Me_trans tRNA met 98.5 1.1E-06 2.3E-11 91.4 12.3 64 350-451 1-72 (349)
73 TIGR00420 trmU tRNA (5-methyla 98.4 1.5E-06 3.3E-11 90.1 12.3 66 349-452 1-76 (352)
74 TIGR02432 lysidine_TilS_N tRNA 98.4 2.1E-06 4.5E-11 81.3 10.1 96 350-500 1-98 (189)
75 PRK04527 argininosuccinate syn 98.4 1.1E-06 2.5E-11 91.5 8.8 66 349-452 3-69 (400)
76 PRK00074 guaA GMP synthase; Re 98.4 1.1E-06 2.4E-11 95.7 9.0 81 330-450 200-281 (511)
77 PRK00919 GMP synthase subunit 98.4 1.2E-06 2.7E-11 88.7 8.5 79 332-451 8-86 (307)
78 cd01997 GMP_synthase_C The C-t 98.3 2E-06 4.3E-11 87.0 8.5 63 350-449 1-64 (295)
79 cd01991 Asn_Synthase_B_C The C 98.3 5E-06 1.1E-10 83.1 10.7 72 339-449 8-79 (269)
80 PRK11106 queuosine biosynthesi 98.3 2.1E-06 4.6E-11 83.6 7.8 63 349-449 2-65 (231)
81 COG0603 Predicted PP-loop supe 98.2 3.4E-06 7.3E-11 80.5 8.0 64 348-449 2-65 (222)
82 TIGR00364 exsB protein. This p 98.2 2.7E-06 5.8E-11 81.5 7.5 61 351-449 1-61 (201)
83 TIGR01536 asn_synth_AEB aspara 98.2 1.4E-05 3.1E-10 86.5 11.9 81 330-449 237-319 (467)
84 KOG0571 Asparagine synthase (g 98.1 3.1E-05 6.7E-10 79.3 12.9 140 331-526 210-351 (543)
85 PRK13820 argininosuccinate syn 98.1 7.4E-06 1.6E-10 85.7 8.8 67 348-451 2-68 (394)
86 PF06508 QueC: Queuosine biosy 98.1 7.1E-06 1.5E-10 79.0 7.6 64 350-451 1-65 (209)
87 PRK00509 argininosuccinate syn 98.1 1.1E-05 2.4E-10 84.5 8.7 66 348-452 2-68 (399)
88 PTZ00077 asparagine synthetase 98.0 4.7E-05 1E-09 84.2 13.5 99 329-457 220-320 (586)
89 PLN02549 asparagine synthase ( 98.0 4.5E-05 9.8E-10 84.2 13.3 145 329-526 208-353 (578)
90 PF00733 Asn_synthase: Asparag 98.0 1.1E-05 2.3E-10 79.5 7.4 80 331-449 2-81 (255)
91 PRK09431 asnB asparagine synth 98.0 6.5E-05 1.4E-09 82.7 14.0 101 329-457 210-312 (554)
92 PRK14561 hypothetical protein; 98.0 5.5E-05 1.2E-09 72.1 11.8 60 350-450 2-61 (194)
93 TIGR03108 eps_aminotran_1 exos 98.0 3.2E-05 6.8E-10 86.9 10.7 133 331-526 243-375 (628)
94 cd01994 Alpha_ANH_like_IV This 98.0 1.7E-05 3.8E-10 75.4 7.1 60 350-447 1-66 (194)
95 PLN00200 argininosuccinate syn 97.9 3.9E-05 8.5E-10 80.5 8.7 65 349-451 6-71 (404)
96 PRK08384 thiamine biosynthesis 97.9 0.00011 2.3E-09 76.9 11.3 59 349-448 181-246 (381)
97 TIGR00032 argG argininosuccina 97.8 4.8E-05 1E-09 79.9 8.2 63 350-451 1-64 (394)
98 cd01992 PP-ATPase N-terminal d 97.8 0.00016 3.4E-09 68.0 10.3 62 350-445 1-64 (185)
99 cd01713 PAPS_reductase This do 97.8 8E-05 1.7E-09 68.5 7.8 68 350-452 1-68 (173)
100 TIGR03104 trio_amidotrans aspa 97.7 0.00015 3.3E-09 80.7 10.5 81 330-449 244-327 (589)
101 cd01999 Argininosuccinate_Synt 97.7 9E-05 2E-09 77.6 7.8 64 351-452 1-65 (385)
102 TIGR00342 thiazole biosynthesi 97.7 0.00016 3.5E-09 75.8 9.5 68 349-454 173-246 (371)
103 PRK08349 hypothetical protein; 97.7 0.00032 7E-09 67.0 10.6 59 350-449 2-67 (198)
104 PRK08576 hypothetical protein; 97.6 0.00027 5.9E-09 75.0 9.8 70 338-445 224-293 (438)
105 PF01171 ATP_bind_3: PP-loop f 97.6 0.00047 1E-08 64.9 10.2 66 350-449 1-68 (182)
106 COG0519 GuaA GMP synthase, PP- 97.6 0.00026 5.7E-09 69.1 8.1 76 346-461 19-95 (315)
107 cd01712 ThiI ThiI is required 97.5 0.00025 5.3E-09 66.4 6.7 62 350-449 1-68 (177)
108 cd01995 ExsB ExsB is a transcr 97.4 0.00078 1.7E-08 62.5 9.4 62 350-450 1-62 (169)
109 TIGR03679 arCOG00187 arCOG0018 97.4 0.00046 1E-08 66.9 8.0 24 425-448 42-65 (218)
110 PRK10696 tRNA 2-thiocytidine b 97.4 0.0013 2.7E-08 65.6 10.8 68 349-449 30-97 (258)
111 COG0367 AsnB Asparagine syntha 97.4 0.0016 3.4E-08 71.7 12.3 135 329-525 213-349 (542)
112 PF02568 ThiI: Thiamine biosyn 97.2 0.0008 1.7E-08 63.9 6.8 71 349-457 4-82 (197)
113 COG0037 MesJ tRNA(Ile)-lysidin 97.2 0.0018 3.8E-08 65.8 9.8 64 349-449 22-88 (298)
114 PRK13794 hypothetical protein; 97.2 0.0024 5.3E-08 69.1 11.0 76 335-448 235-310 (479)
115 PRK05253 sulfate adenylyltrans 97.2 0.0028 6.1E-08 64.4 10.7 77 337-449 18-94 (301)
116 PRK13795 hypothetical protein; 97.1 0.0021 4.5E-08 72.1 10.2 83 330-451 226-308 (636)
117 PRK10660 tilS tRNA(Ile)-lysidi 97.0 0.0019 4.1E-08 69.2 8.3 76 338-448 7-84 (436)
118 PRK02090 phosphoadenosine phos 96.8 0.0063 1.4E-07 60.0 9.5 74 337-449 30-103 (241)
119 COG2117 Predicted subunit of t 96.8 0.0024 5.3E-08 57.4 5.8 59 351-449 3-61 (198)
120 PRK08557 hypothetical protein; 96.7 0.012 2.7E-07 62.3 11.2 81 330-448 161-243 (417)
121 cd01986 Alpha_ANH_like Adenine 96.6 0.0045 9.8E-08 52.4 6.0 18 351-368 1-18 (103)
122 KOG1622 GMP synthase [Nucleoti 96.6 0.011 2.3E-07 61.6 9.4 82 337-460 222-303 (552)
123 PF01507 PAPS_reduct: Phosphoa 96.6 0.01 2.2E-07 54.9 8.3 66 350-453 1-66 (174)
124 COG0137 ArgG Argininosuccinate 96.5 0.0084 1.8E-07 61.6 8.2 66 348-451 4-70 (403)
125 PRK01269 tRNA s(4)U8 sulfurtra 96.5 0.01 2.3E-07 64.5 9.0 66 349-452 178-249 (482)
126 PRK05370 argininosuccinate syn 96.4 0.0099 2.1E-07 62.6 8.2 67 347-451 10-77 (447)
127 PF00764 Arginosuc_synth: Argi 96.4 0.0084 1.8E-07 62.6 7.5 63 352-452 1-64 (388)
128 TIGR00289 conserved hypothetic 96.2 0.015 3.3E-07 56.3 7.7 37 424-460 43-83 (222)
129 TIGR02039 CysD sulfate adenyly 95.6 0.081 1.8E-06 53.5 10.1 75 339-449 12-86 (294)
130 COG0301 ThiI Thiamine biosynth 95.5 0.066 1.4E-06 55.8 9.3 71 349-457 176-253 (383)
131 PRK12563 sulfate adenylyltrans 95.3 0.14 3.1E-06 52.0 10.6 77 337-449 28-104 (312)
132 TIGR00434 cysH phosophoadenyly 95.1 0.16 3.4E-06 49.0 9.9 62 349-448 14-75 (212)
133 TIGR02057 PAPS_reductase phosp 95.0 0.2 4.3E-06 48.9 10.5 61 349-446 26-88 (226)
134 COG1365 Predicted ATPase (PP-l 94.6 0.041 8.8E-07 52.0 4.2 58 349-447 61-118 (255)
135 cd01984 AANH_like Adenine nucl 92.8 0.41 8.9E-06 38.6 6.8 18 351-368 1-18 (86)
136 COG0175 CysH 3'-phosphoadenosi 92.8 0.63 1.4E-05 46.4 9.4 65 349-451 40-104 (261)
137 TIGR00290 MJ0570_dom MJ0570-re 92.2 0.75 1.6E-05 44.7 8.7 34 427-460 46-83 (223)
138 PRK06850 hypothetical protein; 91.8 0.87 1.9E-05 49.5 9.4 37 332-369 19-55 (507)
139 TIGR03183 DNA_S_dndC putative 90.3 1.4 3.1E-05 47.2 9.3 21 349-369 14-34 (447)
140 KOG1706 Argininosuccinate synt 89.3 1.2 2.6E-05 44.6 7.1 56 348-443 5-60 (412)
141 PF01902 ATP_bind_4: ATP-bindi 88.9 0.94 2E-05 43.9 6.1 61 428-492 47-107 (218)
142 COG2102 Predicted ATPases of P 85.2 4 8.7E-05 39.3 7.9 23 427-449 47-69 (223)
143 KOG0573 Asparagine synthase [A 80.3 1.1 2.4E-05 47.1 2.3 20 349-368 251-270 (520)
144 COG3969 Predicted phosphoadeno 78.7 2 4.4E-05 43.7 3.5 24 346-369 25-48 (407)
145 PLN02309 5'-adenylylsulfate re 71.2 24 0.00051 38.2 9.4 33 413-445 136-168 (457)
146 TIGR00424 APS_reduc 5'-adenyly 70.9 24 0.00052 38.2 9.4 33 413-445 141-173 (463)
147 KOG2840 Uncharacterized conser 57.2 16 0.00035 37.2 4.6 83 339-452 43-125 (347)
148 TIGR02055 APS_reductase thiore 56.6 27 0.00058 33.0 5.9 35 413-447 19-53 (191)
149 TIGR00542 hxl6Piso_put hexulos 51.7 42 0.0009 33.4 6.8 62 19-85 90-151 (279)
150 PRK13210 putative L-xylulose 5 51.0 43 0.00094 33.2 6.8 62 19-85 90-151 (284)
151 PRK13209 L-xylulose 5-phosphat 48.1 44 0.00094 33.3 6.3 62 19-85 95-156 (283)
152 cd07568 ML_beta-AS_like mammal 44.4 74 0.0016 31.7 7.3 70 185-256 37-122 (287)
153 PRK09856 fructoselysine 3-epim 44.3 64 0.0014 31.8 6.8 63 18-85 85-147 (275)
154 TIGR03381 agmatine_aguB N-carb 42.1 82 0.0018 31.1 7.2 70 184-256 25-110 (279)
155 PF04273 DUF442: Putative phos 41.7 1.2E+02 0.0026 25.9 7.0 71 413-498 31-107 (110)
156 cd07582 nitrilase_4 Uncharacte 40.7 88 0.0019 31.4 7.2 66 190-256 41-124 (294)
157 cd07581 nitrilase_3 Uncharacte 40.5 98 0.0021 30.1 7.4 71 184-256 23-106 (255)
158 COG1091 RfbD dTDP-4-dehydrorha 39.3 67 0.0015 32.4 5.9 64 175-245 34-108 (281)
159 cd00019 AP2Ec AP endonuclease 37.5 1.2E+02 0.0026 30.0 7.6 62 18-85 80-141 (279)
160 cd07584 nitrilase_6 Uncharacte 36.5 1.5E+02 0.0032 28.8 8.0 70 185-256 26-111 (258)
161 PF10087 DUF2325: Uncharacteri 35.4 85 0.0018 25.9 5.1 43 188-235 45-87 (97)
162 PLN02798 nitrilase 35.0 1.4E+02 0.0031 29.7 7.7 71 184-256 35-119 (286)
163 PRK09997 hydroxypyruvate isome 33.4 1.4E+02 0.0031 29.2 7.2 64 17-85 79-142 (258)
164 cd07576 R-amidase_like Pseudom 33.3 1.6E+02 0.0034 28.5 7.5 70 184-256 25-106 (254)
165 cd07388 MPP_Tt1561 Thermus the 32.0 1.4E+02 0.0031 29.0 6.7 69 3-88 4-72 (224)
166 cd07566 ScNTA1_like Saccharomy 31.8 2.1E+02 0.0046 28.9 8.3 66 190-256 35-116 (295)
167 PF01261 AP_endonuc_2: Xylose 31.4 1.1E+02 0.0023 28.4 5.7 63 20-85 68-130 (213)
168 cd07572 nit Nit1, Nit 2, and r 31.0 1.7E+02 0.0036 28.5 7.3 72 184-256 24-109 (265)
169 cd07573 CPA N-carbamoylputresc 30.6 1.7E+02 0.0037 28.9 7.4 71 184-256 25-111 (284)
170 PLN00202 beta-ureidopropionase 28.7 1.8E+02 0.0039 31.0 7.4 71 185-256 120-206 (405)
171 COG0363 NagB 6-phosphogluconol 28.7 57 0.0012 32.1 3.4 34 325-358 6-41 (238)
172 COG1126 GlnQ ABC-type polar am 27.9 1E+02 0.0022 30.0 4.7 77 28-116 146-223 (240)
173 PRK15018 1-acyl-sn-glycerol-3- 27.7 74 0.0016 31.3 4.0 33 16-48 119-151 (245)
174 cd07567 biotinidase_like bioti 27.6 2E+02 0.0044 29.1 7.3 17 212-228 90-106 (299)
175 TIGR03234 OH-pyruv-isom hydrox 27.4 3.1E+02 0.0066 26.6 8.4 59 22-85 83-141 (254)
176 KOG3147 6-phosphogluconolacton 26.3 63 0.0014 31.7 3.1 35 324-358 13-49 (252)
177 PLN02747 N-carbamolyputrescine 26.2 1.9E+02 0.0041 29.0 6.8 70 184-256 31-116 (296)
178 cd07583 nitrilase_5 Uncharacte 25.9 2.7E+02 0.0058 26.9 7.7 69 185-256 26-106 (253)
179 smart00642 Aamy Alpha-amylase 25.9 1.4E+02 0.003 27.4 5.2 68 22-90 18-93 (166)
180 PLN02504 nitrilase 25.6 2.8E+02 0.0061 28.7 8.1 43 212-257 107-150 (346)
181 PRK12358 putative 6-phosphoglu 25.6 66 0.0014 31.5 3.2 36 326-363 7-42 (239)
182 TIGR01198 pgl 6-phosphoglucono 25.0 80 0.0017 30.8 3.7 35 327-361 4-40 (233)
183 cd07571 ALP_N-acyl_transferase 24.5 1.8E+02 0.0038 28.8 6.2 68 186-255 34-104 (270)
184 PF09587 PGA_cap: Bacterial ca 24.4 5.1E+02 0.011 25.2 9.4 71 160-231 122-224 (250)
185 PRK09762 galactosamine-6-phosp 23.3 78 0.0017 30.8 3.2 33 326-360 7-39 (232)
186 cd07570 GAT_Gln-NAD-synth Glut 23.1 2.2E+02 0.0048 27.7 6.5 17 184-200 25-41 (261)
187 cd07197 nitrilase Nitrilase su 21.9 3.1E+02 0.0066 26.2 7.2 69 184-255 24-106 (253)
188 cd07587 ML_beta-AS mammalian-l 21.5 2.7E+02 0.0058 29.1 7.0 71 185-256 97-185 (363)
189 KOG0733 Nuclear AAA ATPase (VC 21.5 1.2E+03 0.027 26.5 11.9 88 429-521 238-341 (802)
190 PRK12677 xylose isomerase; Pro 21.3 3.7E+02 0.0081 28.3 8.1 61 19-84 110-176 (384)
191 cd07564 nitrilases_CHs Nitrila 21.1 4.1E+02 0.0089 26.6 8.2 71 184-257 26-121 (297)
192 COG2205 KdpD Osmosensitive K+ 20.5 5.1E+02 0.011 30.3 9.0 88 338-459 231-331 (890)
193 TIGR02631 xylA_Arthro xylose i 20.3 5E+02 0.011 27.4 8.7 64 19-84 111-177 (382)
194 PF00795 CN_hydrolase: Carbon- 20.3 2.9E+02 0.0063 25.0 6.4 67 185-254 28-113 (186)
No 1
>PLN02339 NAD+ synthase (glutamine-hydrolysing)
Probab=100.00 E-value=1.6e-106 Score=895.65 Aligned_cols=532 Identities=78% Similarity=1.269 Sum_probs=476.2
Q ss_pred CCceEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhhHHHHHHHHHHhcccCCC
Q 009550 1 MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDG 80 (532)
Q Consensus 1 m~~~rVAlvQ~~~~~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~ 80 (532)
|++||||++|++++.+|+++|+++|+++|++|+++||||||||||++|||+|+|++.+.++.+.+.+.+.+|++.+++++
T Consensus 1 ~~~mrIAlaQl~~~~gD~~~N~~~I~~~I~~A~~~gAdLvVfPEL~lTGY~~~Dl~~~~~~~~~~~~~L~~La~~a~~~~ 80 (700)
T PLN02339 1 MRLLKVATCNLNQWAMDFDGNLKRIKESIAEAKAAGAVYRVGPELEITGYGCEDHFLELDTVTHSWECLAEILVGDLTDG 80 (700)
T ss_pred CceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCccCCCChHHHhhChhHHHHHHHHHHHHHhhcccCC
Confidence 88999999999999999999999999999999999999999999999999999998888877778889999998877889
Q ss_pred eEEEEceeeeeCCeeeEEEEEEeCCEEEEEEecccCCCCCCcccccceeecCCCCcccccccchhhhhhccCceecccce
Q 009550 81 ILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYG 160 (532)
Q Consensus 81 i~iivG~~~~~~~~lyNsa~vi~~G~il~~y~K~~L~~~g~f~E~~~f~~G~~~~~~~~~~lp~~~~~~~~~~~~p~g~~ 160 (532)
+++++|+|++.++++|||++++.+|+|++.|+|+|||+|++|+|+|||+||+.......|.+|.++..+.++..+|||+.
T Consensus 81 i~vvvG~p~~~~~~lYN~a~vi~~GkIlg~y~K~hLpny~~f~E~r~F~pG~~~~~~~~~~l~~~~~~~~g~~~vpfg~~ 160 (700)
T PLN02339 81 ILCDIGMPVIHGGVRYNCRVFCLNRKILLIRPKMWLANDGNYRELRWFTAWKHKKKVEDFQLPEEIAEATSQKSVPFGDG 160 (700)
T ss_pred eEEEEeeeEEECCeEEEEEEEEeCCEEEEEEecccCCCCCccccccccccCccCCcceeeccccchhhccCCceeccCcc
Confidence 99999999888889999999999999999999999999999999999999985432344556666666777778999999
Q ss_pred eEEeCCceEEEEeeccCCCCChHHHHHHhCCCeEEEEcCCCCccccchHHHHHHHHHHHHHcCcEEEEEcCcCCCCCcee
Q 009550 161 FIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLY 240 (532)
Q Consensus 161 vf~~~~~riGv~IC~D~~~pe~~~~~la~~GadlIl~psas~~~~g~~~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~ 240 (532)
+|++++++||++||||+|+|+.++..++++|||||+|||+|++..||...|++++..+++..+++|||||++|+++++.+
T Consensus 161 ~~~~~g~~iGv~ICeDlwfPe~p~~~lAl~GAdII~n~sas~~~~gK~~~R~rai~n~sa~~~~~yvyaN~~Ge~~~~lv 240 (700)
T PLN02339 161 YLQFLDTAVAAETCEELFTPQAPHIDLALNGVEIISNGSGSHHQLRKLNTRLDLIRSATHKCGGVYLYANQRGCDGGRLY 240 (700)
T ss_pred eeecCCeEEEEEEecccCCChHHHHHHHHcCCeEEEECCCChhhcCCHHHHHHHHHHHHHHhCCcEEEEcCCccCCCceE
Confidence 99999999999999999999876656999999999999999999999889999999999999999999999997767799
Q ss_pred eeccEEEEeCCeEEEeeCCCCCCceeEEEEEeechhhhhhhccCCchhhhhcccCCCCeEEeeccccCCCcccCCCCCcc
Q 009550 241 FDGCSCVVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASCKTKIPSVAVPYNLCQPFNLKMSLSSPL 320 (532)
Q Consensus 241 f~G~S~I~p~G~ila~~~~f~e~~~~iv~a~iDl~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (532)
|+|+|+|.|+|+++++++.|+++++++++++||++.++..|.+.+++.+..........+.++++++........+.+++
T Consensus 241 f~G~S~I~~~G~ilaea~~F~~~~~~vi~adIDl~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (700)
T PLN02339 241 YDGCACIVVNGEVVAQGSQFSLQDVEVVTACVDLDAVVSFRGSISSFREQASSKKRVPSVAVPFKLCPPFSLSLVPSSPL 320 (700)
T ss_pred EcCceEEeCCCcEeEecCCcccCCceEEEEEEehHHhhhHhhcCCchhhhhhcccccceeEEeeccCCccccccCCCCcc
Confidence 99999999999999999999764457999999999999999988888765432222334566666653221111234566
Q ss_pred ccCCCCcHHHHhcchhhHHHHHHHHhCCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCC
Q 009550 321 KINYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGE 400 (532)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 400 (532)
++.|+.|.+|++.++++||||||+++|++|++||||||+|||++|+|++.||+++++|++.|.++++.+++++.+.+..+
T Consensus 321 ~~~~~~p~~ei~~~~~~~L~d~l~~~g~~g~vlglSGGiDSa~~a~lv~~~~~~~~~a~~~~~~~v~~~~~~~~~~~~~~ 400 (700)
T PLN02339 321 KIRYHSPEEEIALGPACWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGSMCQLVVKAIREGDEQVKADARRIGNYADGE 400 (700)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHhCCCeEEEEccCCHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhccccccc
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999988766567
Q ss_pred CCCChHHhhcceEEEEecCCCCCCHHhHHHHHHHHHHhCCceEEEecHHHHHHHHHHhHhhhCCCCCcccCCCccccccc
Q 009550 401 FPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLG 480 (532)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (532)
.|.++++++++.++||+||+.+||+.|+++|++||+.||++|++|+|+++++++.++++...|++|.|++++|++.+|++
T Consensus 401 ~~~~~~~~~~~~~~~v~mp~~~ss~~t~~~A~~la~~lG~~~~~i~I~~~~~~~~~~~~~~~g~~~~f~~~~~~~~~d~~ 480 (700)
T PLN02339 401 VPTDSKEFAKRIFYTVYMGSENSSEETRSRAKQLADEIGSSHLDVKIDGVVSAVLSLFQTLTGKRPRYKVDGGSNAENLA 480 (700)
T ss_pred cccchhhhhcceeEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEeCHHHHHHHHHHhhhhcCCCccccccCCCcccchh
Confidence 89999999999999999999999999999999999999999999999999999999999888999999998888888999
Q ss_pred hhhhhhhhhHHHHHHHhhcCccccCCCCcEEEEcCCCccccccccccccCCC
Q 009550 481 LQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKVFDL 532 (532)
Q Consensus 481 ~~N~qaR~R~~~l~~~a~~~~~~~~~~~~~lvlgT~n~sE~~~Gy~T~ygd~ 532 (532)
+||+|||+||+++|++||++-+++|+.|++|||||||+||.++||+|||||.
T Consensus 481 ~~NiQAR~R~~~l~~~A~l~~~~~~~~g~~LvlgTgN~sE~~~Gy~T~ygd~ 532 (700)
T PLN02339 481 LQNIQARIRMVLAFMLASLLPWVRGKSGFLLVLGSANVDEGLRGYLTKYDCS 532 (700)
T ss_pred hhcccHHHHHHHHHHHHhhcchhhccCCceEEEcCCCcchhheeeeeecCCC
Confidence 9999999999999999999966777776359999999999999999999995
No 2
>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only]
Probab=100.00 E-value=1.1e-104 Score=797.47 Aligned_cols=529 Identities=59% Similarity=0.990 Sum_probs=506.8
Q ss_pred CCceEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhhHHHHHHHHHHhcccCCC
Q 009550 1 MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDG 80 (532)
Q Consensus 1 m~~~rVAlvQ~~~~~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~ 80 (532)
||.++||.+++|.+..|+++|.+||++.|++|++.||.+-+-||+-+|||.|+|.|.+.+...++++.|.+|.+.....+
T Consensus 2 ~r~vtvAtc~lNqWAlDFegN~~rI~~Si~eAk~~gA~~RlGPELEi~GYgC~DHf~E~Dt~~HswE~l~~l~~~~~~~~ 81 (706)
T KOG2303|consen 2 GRKVTVATCTLNQWALDFEGNMQRILKSIEEAKARGARYRLGPELEITGYGCEDHFLESDTLLHSWEMLAELVESPVTQD 81 (706)
T ss_pred CceEEEEEechhhhhhhccccHHHHHHHHHHHHhcCCeeecCCceeecCCChHHhhccchHHHHHHHHHHHHHcCCCCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999998777889
Q ss_pred eEEEEceeeeeCCeeeEEEEEEeCCEEEEEEecccCCCCCCcccccceeecCCCCcccccccchhhhhhccCceecccce
Q 009550 81 ILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYG 160 (532)
Q Consensus 81 i~iivG~~~~~~~~lyNsa~vi~~G~il~~y~K~~L~~~g~f~E~~~f~~G~~~~~~~~~~lp~~~~~~~~~~~~p~g~~ 160 (532)
+.+.+|+|..+.+..|||.+++-||+|+.+.+|+-|.+.|.|+|.|||+||.....++.|.+|..+++..+|++||||+.
T Consensus 82 il~diGmPv~hr~~ryNCrv~~~n~kil~IRpKm~lanDgnyRE~RwFt~W~~~~~~e~y~lP~~i~~~~~Q~tVPfGda 161 (706)
T KOG2303|consen 82 ILCDIGMPVMHRNVRYNCRVLFLNRKILLIRPKMWLANDGNYRESRWFTPWTRPRVTEEYQLPRMIQKHTGQETVPFGDA 161 (706)
T ss_pred eeEecCCchhhhhhhhccceeecCCeEEEEcccceeccCCCchhhccccccccccccceeeccHHHHHHhCCeeecccce
Confidence 99999999999999999999999999999999999999999999999999999877889999999999999999999999
Q ss_pred eEEeCCceEEEEeeccCCCCChHHHHHHhCCCeEEEEcCCCCccccchHHHHHHHHHHHHHcCcEEEEEcCcCCCCCcee
Q 009550 161 FIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLY 240 (532)
Q Consensus 161 vf~~~~~riGv~IC~D~~~pe~~~~~la~~GadlIl~psas~~~~g~~~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~ 240 (532)
++++.+..||..||+++|.|.++...++++|+||++|.|.|++.++|...|..++...+.++|..|+|+|+-|++++.++
T Consensus 162 vl~~~dt~ig~EiCEEL~tp~sphi~mal~GVei~~NaSGShh~LrK~~~r~~li~~at~k~GGvYlyaNqrGCDG~RlY 241 (706)
T KOG2303|consen 162 VLQTWDTCIGSEICEELWTPRSPHIDMALDGVEIITNASGSHHELRKLNTRVDLILNATSKCGGVYLYANQRGCDGDRLY 241 (706)
T ss_pred eeeecccchhHHHHHHHcCCCCcchhhhhCceEEEecCCccHHHHhhhhhhhHHHhcchhhcceEEEeeccCCCCCceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccEEEEeCCeEEEeeCCCCCCceeEEEEEeechhhhhhhccCCchhhhhcccCCCCeEEeeccccCCCcccCCCCCcc
Q 009550 241 FDGCSCVVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASCKTKIPSVAVPYNLCQPFNLKMSLSSPL 320 (532)
Q Consensus 241 f~G~S~I~p~G~ila~~~~f~e~~~~iv~a~iDl~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (532)
|+|+|+|+-||+++||+.+|+-+|.++++|+||++.++..|...++...++..+.+++++++++.++........+..|+
T Consensus 242 ydGca~Ia~NG~vlAqg~QFsl~DveVv~atvDle~vrsyR~~~~S~~~~as~~~~~~ri~v~~~ls~~~d~~~~~t~p~ 321 (706)
T KOG2303|consen 242 YDGCAMIAMNGSVLAQGSQFSLDDVEVVTATVDLEDVRSYRASISSRGLQASRAVKYPRIHVDFELSQHFDLLATPTEPI 321 (706)
T ss_pred ecchhheeecceeeeecccccccceEEEEEEecHHHHHHHHhhhccccccccccCCcceeeecceeccccccccCCCCCc
Confidence 99999999999999999999998999999999999999999888888777766778999999999886554444567888
Q ss_pred ccCCCCcHHHHhcchhhHHHHHHHHhCCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCC
Q 009550 321 KINYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGE 400 (532)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 400 (532)
++..++|+|||..+++||||||||++|..||+|+||||+||+.+|+|++.||++|++|+.+|++++..|..++..+ .+.
T Consensus 322 e~~~hsPeeEia~GPacwlWdyLRRs~~aGfflPLSGG~DSsatA~iV~sMC~~V~~av~~g~eqv~~Dvr~i~~~-~~~ 400 (706)
T KOG2303|consen 322 EWKYHSPEEEIALGPACWLWDYLRRSGQAGFFLPLSGGVDSSATAAIVYSMCRQVCKAVQSGDEQVLADVRRIVND-ISY 400 (706)
T ss_pred ccccCCcHHHhccCchHHHHHHHHhcCCCceEEecCCCccchHHHHHHHHHHHHHHHHHHcCchhhhhhhHHHhcC-CCc
Confidence 8889999999999999999999999999999999999999999999999999999999999999999999998755 567
Q ss_pred CCCChHHhhcceEEEEecCCCCCCHHhHHHHHHHHHHhCCceEEEecHHHHHHHHHHhHhhhCCCCCcccCCCccccccc
Q 009550 401 FPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLG 480 (532)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (532)
.|.+|+++|++.+++|||.|.+||++|+.+|++||+.+|..|..|+|+.++.++.+.|+-++|+.|.|+.+||+++++++
T Consensus 401 ~p~dp~~l~nri~~TcyMgSenSS~ETr~rak~La~~igs~H~~i~iD~~vsavl~lF~~vtGk~P~f~~~ggsn~enla 480 (706)
T KOG2303|consen 401 TPTDPADLCNRILYTCYMGSENSSKETRRRAKELANQIGSYHIDLNIDTAVSAVLSLFNLVTGKTPRFKSHGGSNRENLA 480 (706)
T ss_pred CCCCHHHHHHhhhhhheeccccccHHHHHHHHHHHHhhcceeeeeeehHHHHHHHHHHHHHhCCCcceecCCCchhhhHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHhhcCccccCCCCcEEEEcCCCccccccccccccC
Q 009550 481 LQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKVF 530 (532)
Q Consensus 481 ~~N~qaR~R~~~l~~~a~~~~~~~~~~~~~lvlgT~n~sE~~~Gy~T~yg 530 (532)
+||||||+||++.|.+||+++|..+++||+|||||.|.+|.++||-|||-
T Consensus 481 LQNiQARiRMvLaylfAqL~~wvr~~~GglLVLGSaNVDE~LrGYLTKYD 530 (706)
T KOG2303|consen 481 LQNIQARIRMVLAYLFAQLLLWVRGRPGGLLVLGSANVDESLRGYLTKYD 530 (706)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecCccchHhhhhhhhcc
Confidence 99999999999999999999999999999999999999999999999994
No 3
>PRK02628 nadE NAD synthetase; Reviewed
Probab=100.00 E-value=5.3e-86 Score=734.01 Aligned_cols=471 Identities=26% Similarity=0.370 Sum_probs=392.8
Q ss_pred CceEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhhHHHHHHHHHHhcccCCCe
Q 009550 2 RLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGI 81 (532)
Q Consensus 2 ~~~rVAlvQ~~~~~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i 81 (532)
.+||||++|+++..+|+++|+++|.+++++|+++|||||||||+++|||++.|++.++++.+.+.+.+++|++.++++++
T Consensus 11 ~~mrIAlaQ~~~~~gD~~~Nl~~i~~~i~~A~~~gadLvVfPEL~ltGY~~~dl~~~~~~~~~~~~~l~~L~~~a~~~~i 90 (679)
T PRK02628 11 GFVRVAAATPKVRVADPAFNAARILALARRAADDGVALAVFPELSLSGYSCDDLFLQDTLLDAVEDALATLVEASADLDP 90 (679)
T ss_pred CcEEEEEEeCCcccCCHHHHHHHHHHHHHHHHHCCCeEEEcccccccCCCcchhhccHHHHHhhHHHHHHHHHHHhhcCE
Confidence 47999999999999999999999999999999999999999999999999999888777777777888889888888999
Q ss_pred EEEEceeeeeCCeeeEEEEEEeCCEEEEEEecccCCCCCCcccccceeecCCCCcccccccchhhhhhccCceecccc-e
Q 009550 82 LCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGY-G 160 (532)
Q Consensus 82 ~iivG~~~~~~~~lyNsa~vi~~G~il~~y~K~~L~~~g~f~E~~~f~~G~~~~~~~~~~lp~~~~~~~~~~~~p~g~-~ 160 (532)
++++|+|++.++++||++++|++|++++.|+|+|||+|++|+|++||+||+.... . ...+ .|..+|||+ .
T Consensus 91 ~ivvG~p~~~~~~lyNsa~vi~~G~il~~y~K~hLp~~~~f~E~r~F~~G~~~~~-~-------~~~~-~g~~vpfG~~~ 161 (679)
T PRK02628 91 LLVVGAPLRVRHRLYNCAVVIHRGRILGVVPKSYLPNYREFYEKRWFAPGDGARG-E-------TIRL-CGQEVPFGTDL 161 (679)
T ss_pred EEEEeeEEEECCEEEEEEEEEcCCEEEEEeccccCCCCCcccccccccCCCCCCC-c-------eEee-cCeeeccCCce
Confidence 9999999888889999999999999999999999999999999999999986310 0 0012 345899985 6
Q ss_pred eEEe---CCceEEEEeeccCCCCChHHHHHHhCCCeEEEEcCCCCccccchHHHHHHHHHHHHHcCcEEEEEcC-cCCCC
Q 009550 161 FIQF---LDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNH-QGCDG 236 (532)
Q Consensus 161 vf~~---~~~riGv~IC~D~~~pe~~~~~la~~GadlIl~psas~~~~g~~~~~~~l~~~rA~e~~~~vv~aN~-~G~~~ 236 (532)
+|++ +++|||++||||+|||+.+.+.++++|||||++|++||+..++...|..+++.+|+++++++|++|+ +|+++
T Consensus 162 vf~~~~~~g~kiGv~IC~DlwfPe~~~~~la~~GAdIil~psAsp~~~gk~~~r~~l~~~~aar~~~~~v~~n~~~G~~~ 241 (679)
T PRK02628 162 LFEAEDLPGFVFGVEICEDLWVPIPPSSYAALAGATVLANLSASNITVGKADYRRLLVASQSARCLAAYVYAAAGVGEST 241 (679)
T ss_pred eEEecccCCcEEEEEEeccccccCchhhHHhcCCCEEEEeCCCCCcccCcHHHHHHHHHHHHHHhCcEEEEEecccccCC
Confidence 7876 6899999999999999877789999999999999999999998877888899999999999999987 55555
Q ss_pred CceeeeccEEEEeCCeEEEeeCCCCCCceeEEEEEeechhhhhhhccCCchhhhhcc---cCCCCeEEeeccccCCCccc
Q 009550 237 GRLYFDGCSCVVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASC---KTKIPSVAVPYNLCQPFNLK 313 (532)
Q Consensus 237 ~~~~f~G~S~I~p~G~ila~~~~f~e~~~~iv~a~iDl~~~~~~R~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 313 (532)
++.+|+|+|+|+++|+++++++.|+++ +++++++||++.++..|.+.+.+.+.... ...+. .++++++.+.. .
T Consensus 242 ~~~vf~G~S~I~~~G~vla~a~~f~~~-e~l~~adiDl~~v~~~R~~~~~~~d~~~~~~~~~~~~--~~~~~~~~~~~-~ 317 (679)
T PRK02628 242 TDLAWDGQTLIYENGELLAESERFPRE-EQLIVADVDLERLRQERLRNGSFDDNARHRDESAPFR--TIPFALDPPAG-D 317 (679)
T ss_pred CCeEEeCeEEEEcCCeEEEecCCCCCC-CcEEEEEEcHHHHHHHHhhcCCcccchhcccccCCce--EEEeeccCCcc-c
Confidence 679999999999999999999998764 57999999999999999888877654310 11232 34455443211 1
Q ss_pred CCCCCccccCCCCcH---------HHHhcchhhHHHHHHHHhCCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCch
Q 009550 314 MSLSSPLKINYHSPE---------EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDE 384 (532)
Q Consensus 314 ~~~~~~~~~~~~~~~---------~~~~~~~~~~L~~~l~~~~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~ 384 (532)
..+.+++++.||.|. ++++.+++.||+||++++|.++++||||||+||+++|+++ +++++
T Consensus 318 ~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~vvvglSGGiDSal~l~l~-------~~a~~---- 386 (679)
T PRK02628 318 LGLRRPVERFPFVPSDPARLDQRCYEAYNIQVSGLAQRLRATGLKKVVIGISGGLDSTHALLVA-------AKAMD---- 386 (679)
T ss_pred ccccCcCCCCCCCCcChhhhhhhHHHHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHH-------HHHHH----
Confidence 123455666666654 7899999999999999999999999999999999988888 45532
Q ss_pred hHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHHhHHHHHHHHHHhCCceEEEecHHHHHHHHHHhHhhhCC
Q 009550 385 QVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGK 464 (532)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~~~~~~ 464 (532)
+++.. +. +|++|+||+.++++.|.++|+++|+.||++|++|+|+++++++...+...++.
T Consensus 387 -------~lg~~--------~~-----~v~~v~mp~~~ss~~s~~~a~~la~~LGi~~~~i~I~~~~~~~~~~l~~~~~~ 446 (679)
T PRK02628 387 -------RLGLP--------RK-----NILAYTMPGFATTDRTKNNAVALMKALGVTAREIDIRPAALQMLKDIGHPFAR 446 (679)
T ss_pred -------hhCCC--------cc-----eEEEEECCCCCCCHHHHHHHHHHHHHhCCeEEEEEcHHHHHHHHHHhcccccc
Confidence 14411 01 69999999999999999999999999999999999999999887665432211
Q ss_pred CCCcccCCCccccccchhhhhhhhhHHHHHHHhhcCccccCCCCcEEEEcCCCcccccccccccc-CCC
Q 009550 465 RPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKV-FDL 532 (532)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~N~qaR~R~~~l~~~a~~~~~~~~~~~~~lvlgT~n~sE~~~Gy~T~y-gd~ 532 (532)
|.+.+|+++||+|||+||.+||.+|+ +.|+ +||||||+||.++||+||| ||.
T Consensus 447 --------~~~~~~~t~~N~qaR~R~~~L~~~An-------~~g~-lvl~Tgn~sE~~~Gy~T~~~GD~ 499 (679)
T PRK02628 447 --------GEPVYDVTFENVQAGERTQILFRLAN-------QHGG-IVIGTGDLSELALGWCTYGVGDH 499 (679)
T ss_pred --------CCcccchhhhhhhHHHHHHHHHHHHh-------hcCc-EEEcCCchhhHHhCceecCCCCc
Confidence 22356899999999999999996654 5574 9999999999999999999 994
No 4
>PRK13981 NAD synthetase; Provisional
Probab=100.00 E-value=2.2e-80 Score=677.00 Aligned_cols=409 Identities=29% Similarity=0.371 Sum_probs=359.9
Q ss_pred eEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhhHHHHHHHHHHhcccCCCeEE
Q 009550 4 LKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILC 83 (532)
Q Consensus 4 ~rVAlvQ~~~~~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~i 83 (532)
||||++|+++.++|++.|+++|.+++++|+++|||||||||++++||.+.+++..+++...+.+.+.+|++.++ +++++
T Consensus 1 mkIAl~Q~~~~~gd~~~N~~~i~~~i~~A~~~gadLIVfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~La~~~~-~~i~i 79 (540)
T PRK13981 1 LRIALAQLNPTVGDIAGNAAKILAAAAEAADAGADLLLFPELFLSGYPPEDLLLRPAFLAACEAALERLAAATA-GGPAV 79 (540)
T ss_pred CEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECcchhhcCCChhhhhcCHHHHHHHHHHHHHHHHhcC-CCCEE
Confidence 79999999999999999999999999999999999999999999999998887777777777788999998765 79999
Q ss_pred EEceeeeeCCeeeEEEEEEeCCEEEEEEecccCCCCCCcccccceeecCCCCcccccccchhhhhhccCceecccceeEE
Q 009550 84 SFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQ 163 (532)
Q Consensus 84 ivG~~~~~~~~lyNsa~vi~~G~il~~y~K~~L~~~g~f~E~~~f~~G~~~~~~~~~~lp~~~~~~~~~~~~p~g~~vf~ 163 (532)
++|++++.++++||++++|++|++++.|+|+|||+|++|+|.+||+||+.. .+|+
T Consensus 80 i~G~~~~~~~~~yNsa~vi~~G~i~~~y~K~~L~~~~~~~E~~~f~~G~~~-------------------------~~~~ 134 (540)
T PRK13981 80 LVGHPWREGGKLYNAAALLDGGEVLATYRKQDLPNYGVFDEKRYFAPGPEP-------------------------GVVE 134 (540)
T ss_pred EEeCcEeeCCcEEEEEEEEECCeEEEEEeeeeCCCCCCcCccccccCCCCc-------------------------eEEE
Confidence 999998888899999999999999999999999999999999999999764 2789
Q ss_pred eCCceEEEEeeccCCCCChHHHHHHhCCCeEEEEcCCCCccccchHHHHHHHHHHHHHcCcEEEEEcCcCCCCCceeeec
Q 009550 164 FLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDG 243 (532)
Q Consensus 164 ~~~~riGv~IC~D~~~pe~~~~~la~~GadlIl~psas~~~~g~~~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~f~G 243 (532)
++++|||++||+|+|||+ +.+.++.+|||+|++|++|++..++..+|..+++.||.||++++++||++|.+ ++.+|.|
T Consensus 135 ~~g~rigv~IC~D~~~pe-~~r~la~~Gadlil~psa~~~~~~~~~~~~~~~~~rA~En~~~vv~aN~vG~~-~~~~f~G 212 (540)
T PRK13981 135 LKGVRIGVPICEDIWNPE-PAETLAEAGAELLLVPNASPYHRGKPDLREAVLRARVRETGLPLVYLNQVGGQ-DELVFDG 212 (540)
T ss_pred ECCEEEEEEEehhhcCCc-HHHHHHHCCCcEEEEcCCCcccCCcHHHHHHHHHHHHHHhCCeEEEEecccCC-CceEEeC
Confidence 999999999999999997 77899999999999999999888877778889999999999999999999988 7889999
Q ss_pred cEEEE-eCCeEEEeeCCCCCCceeEEEEEeechhhhhhhccCCchhhhhcccCCCCeEEeeccccCCCcccCCCCCcccc
Q 009550 244 CSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASCKTKIPSVAVPYNLCQPFNLKMSLSSPLKI 322 (532)
Q Consensus 244 ~S~I~-p~G~ila~~~~f~e~~~~iv~a~iDl~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (532)
+|+|+ |+|+++++++.|++ +++++++|++.. .|+.. +. +..+
T Consensus 213 ~S~i~dp~G~il~~~~~~~e---~~l~~did~~~~--------~~~~~------------~~--------------~~~~ 255 (540)
T PRK13981 213 ASFVLNADGELAARLPAFEE---QIAVVDFDRGED--------GWRPL------------PG--------------PIAP 255 (540)
T ss_pred ceEEECCCCCEeeecCCCCC---cEEEEEEeecCC--------CcccC------------CC--------------CCCC
Confidence 99999 99999999998864 688999998531 11100 00 0000
Q ss_pred CCCCcHHHHhcchhhHHHHHHHHhCCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCC
Q 009550 323 NYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFP 402 (532)
Q Consensus 323 ~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 402 (532)
+....++++++++.||++|++++|.++++||||||+|||++|+|+ +++ +++.
T Consensus 256 -~~~~~~~~~~~l~~~l~~~~~~~~~~~~vvglSGGiDSa~~a~la-------~~a--------------~g~~------ 307 (540)
T PRK13981 256 -PPEGEAEDYRALVLGLRDYVRKNGFPGVVLGLSGGIDSALVAAIA-------VDA--------------LGAE------ 307 (540)
T ss_pred -CCChHHHHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHH-------HHH--------------hCcC------
Confidence 123457899999999999999999999999999999999999998 455 4433
Q ss_pred CChHHhhcceEEEEecCCCCCCHHhHHHHHHHHHHhCCceEEEecHHHHHHHHHHhHhhhCCCCCcccCCCccccccchh
Q 009550 403 TDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQ 482 (532)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (532)
+|++++||+.++++.+.++|+++|+.+|++|++|+|+++++++...+...++. ...+++.+
T Consensus 308 ---------~v~~~~~p~~~~~~~~~~~a~~~a~~lgi~~~~i~i~~~~~~~~~~~~~~~~~----------~~~~~~~~ 368 (540)
T PRK13981 308 ---------RVRAVMMPSRYTSEESLDDAAALAKNLGVRYDIIPIEPAFEAFEAALAPLFAG----------TEPDITEE 368 (540)
T ss_pred ---------cEEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEECHHHHHHHHHHhhhhhcC----------CCCCchHH
Confidence 59999999999999999999999999999999999999999998877654321 13589999
Q ss_pred hhhhhhhHHHHHHHhhcCccccCCCCcEEEEcCCCccccccccccccCCC
Q 009550 483 NIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKVFDL 532 (532)
Q Consensus 483 N~qaR~R~~~l~~~a~~~~~~~~~~~~~lvlgT~n~sE~~~Gy~T~ygd~ 532 (532)
|+|||+||.+||++|+.. | ++||||||+||.++||||||||.
T Consensus 369 N~~ar~R~~~l~~~a~~~-------~-~lvlgt~n~sE~~~Gy~t~~GD~ 410 (540)
T PRK13981 369 NLQSRIRGTLLMALSNKF-------G-SLVLTTGNKSEMAVGYATLYGDM 410 (540)
T ss_pred HHHHHHHHHHHHHHHhcc-------C-CEEEeCCccCHHHcCCeEecCCc
Confidence 999999999999877655 6 59999999999999999999995
No 5
>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases). Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their active site residues into different unrelated classes. This class of GAT domain belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this sub
Probab=100.00 E-value=1.3e-47 Score=382.21 Aligned_cols=252 Identities=36% Similarity=0.522 Sum_probs=226.4
Q ss_pred EEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhhHHHHHHHHHHhcccCCCeEEE
Q 009550 5 KVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCS 84 (532)
Q Consensus 5 rVAlvQ~~~~~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~ii 84 (532)
|||++|+++..+|++.|++++.+++++|+++|+|||||||+++|||.+.+.+....+.+...+.+++|++.+++++++++
T Consensus 1 ria~~Q~~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~la~~~~~~~i~ii 80 (261)
T cd07570 1 RIALAQLNPTVGDLEGNAEKILEAIREAKAQGADLVVFPELSLTGYPPEDLLLRPDFLEAAEEALEELAAATADLDIAVV 80 (261)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHHcCCCEEEccchhccCCChHHHhhCHHHHHHHHHHHHHHHHhcccCCcEEE
Confidence 69999999989999999999999999999999999999999999999877665555555567789999998888899999
Q ss_pred EceeeeeCCeeeEEEEEEeCCEEEEEEecccCCCCCCcccccceeecCCCCcccccccchhhhhhccCceecccceeEEe
Q 009550 85 FGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQF 164 (532)
Q Consensus 85 vG~~~~~~~~lyNsa~vi~~G~il~~y~K~~L~~~g~f~E~~~f~~G~~~~~~~~~~lp~~~~~~~~~~~~p~g~~vf~~ 164 (532)
+|++++.++++||++++|.+|++++.|+|+||+++++|.|.+||++|+... +|++
T Consensus 81 ~G~~~~~~~~~yNs~~~i~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~~~-------------------------~~~~ 135 (261)
T cd07570 81 VGLPLRHDGKLYNAAAVLQNGKILGVVPKQLLPNYGVFDEKRYFTPGDKPD-------------------------VLFF 135 (261)
T ss_pred EeceEecCCCEEEEEEEEeCCEEEEEEECccCcCCccccccccCccCCCCC-------------------------eEEE
Confidence 999998888999999999999999999999999999999999999998642 8899
Q ss_pred CCceEEEEeeccCCCCChHHHHHHhCCCeEEEEcCCCCccccchHHHHHHHHHHHHHcCcEEEEEcCcCCCCCceeeecc
Q 009550 165 LDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGC 244 (532)
Q Consensus 165 ~~~riGv~IC~D~~~pe~~~~~la~~GadlIl~psas~~~~g~~~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~f~G~ 244 (532)
+++|||++||+|+|||+.+.+.++++|||+|++|+++++..++..+|..++++||.||+++++++|++|.+ ++..|.|+
T Consensus 136 ~~~~ig~~IC~D~~fpe~~~r~~~~~ga~ll~~ps~~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~g~~-~~~~~~G~ 214 (261)
T cd07570 136 KGLRIGVEICEDLWVPDPPSAELALAGADLILNLSASPFHLGKQDYRRELVSSRSARTGLPYVYVNQVGGQ-DDLVFDGG 214 (261)
T ss_pred CCEEEEEEeecccCCCCchHHHHHHcCCcEEEEeCCCccccCcHHHHHHHHHHHHHHhCCcEEEEeCCCCC-ceEEEECc
Confidence 99999999999999998648899999999999999999877776677788999999999999999999987 77889999
Q ss_pred EEEE-eCCeEEEeeCCCCCCceeEEEEEeechhhhhhhccCCch
Q 009550 245 SCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSF 287 (532)
Q Consensus 245 S~I~-p~G~ila~~~~f~e~~~~iv~a~iDl~~~~~~R~~~~~~ 287 (532)
|+|+ |+|+++++++.+ +.+++++|++.++..|.+.+.+
T Consensus 215 S~ii~p~G~vl~~~~~~-----~~~~~~id~~~~~~~r~~~~~~ 253 (261)
T cd07570 215 SFIADNDGELLAEAPRF-----EEDLADVDLDRLRSERRRNSSF 253 (261)
T ss_pred eEEEcCCCCEEEecCcc-----eEEEEEEEEecCcccccccCCC
Confidence 9999 999999998764 4678999999998888765443
No 6
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.
Probab=100.00 E-value=1.1e-44 Score=364.61 Aligned_cols=253 Identities=21% Similarity=0.249 Sum_probs=209.2
Q ss_pred eEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhhHH-----HHHHHHHHhcccC
Q 009550 4 LKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHA-----WECLKDLLLGDWT 78 (532)
Q Consensus 4 ~rVAlvQ~~~~~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~~~~~~~~-----~~~l~~la~~~~~ 78 (532)
||||++|+++. +|++.|++++.+++++|+++|||||||||++++||.+.+.. ..+.+.+ ...++.+++.+++
T Consensus 1 ~~ia~~Q~~~~-~d~~~Nl~~~~~~i~~A~~~gadlivfPE~~~~gy~~~~~~--~~~~~~a~~~~~~~~~~~l~~~a~~ 77 (279)
T TIGR03381 1 VTVAALQMACS-DDVETNIARAERLVREAAARGAQIILLPELFEGPYFCKDQD--EDYFALAQPVEGHPAIKRFQALAKE 77 (279)
T ss_pred CEEEEEEeecc-CCHHHHHHHHHHHHHHHHHCCCCEEEcccccCCCCcCCccc--cchHhhcCcCCCChHHHHHHHHHHH
Confidence 68999999986 99999999999999999999999999999999999875531 1111110 1234444444456
Q ss_pred CCeEEEEceeeeeCCeeeEEEEEEe-CCEEEEEEecccCCCCCCcccccceeecCCCCcccccccchhhhhhccCceecc
Q 009550 79 DGILCSFGMPVIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPF 157 (532)
Q Consensus 79 ~~i~iivG~~~~~~~~lyNsa~vi~-~G~il~~y~K~~L~~~g~f~E~~~f~~G~~~~~~~~~~lp~~~~~~~~~~~~p~ 157 (532)
+++++++|++++.++++||++++|+ +|++++.|+|+|||....|.|++||+||+...
T Consensus 78 ~~i~i~~g~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~~~~E~~~f~~G~~~~---------------------- 135 (279)
T TIGR03381 78 LGVVIPVSFFEKAGNAYYNSLAMIDADGSVLGVYRKSHIPDGPGYQEKFYFRPGDTGF---------------------- 135 (279)
T ss_pred cCcEEEEeeeecCCCceEEeEEEECCCCCEEEEEEeeecCCCCCcccceeEccCCCCC----------------------
Confidence 8999999999888889999999997 89999999999998766678999999997421
Q ss_pred cceeEEeCCceEEEEeeccCCCCChHHHHHHhCCCeEEEEcCCCCccc-----cchHHHHHHHHHHHHHcCcEEEEEcCc
Q 009550 158 GYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQL-----RKLDYRIRAFISATHSRGGVYMYSNHQ 232 (532)
Q Consensus 158 g~~vf~~~~~riGv~IC~D~~~pe~~~~~la~~GadlIl~psas~~~~-----g~~~~~~~l~~~rA~e~~~~vv~aN~~ 232 (532)
.+|+++++|+|++||+|+|||+ ..|.++++|||+|++|+++++.. .....|..++++||.||++++++||++
T Consensus 136 --~~f~~~~~~ig~~IC~D~~fpe-~~r~~a~~ga~lil~ps~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~ 212 (279)
T TIGR03381 136 --KVWDTRYGRIGVGICWDQWFPE-TARAMALMGAEVLFYPTAIGSEPHDPDLDSRDHWQRVMQGHAAANLVPVVAANRI 212 (279)
T ss_pred --ceEecCCceEEEEEEcCCcChH-HHHHHHHcCCCEEEecCccCCCCcccccccHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 2899999999999999999997 57899999999999999975421 122345567888999999999999999
Q ss_pred CCC---CCceeeeccEEEE-eCCeEEEeeCCCCCCceeEEEEEeechhhhhhhccCCch
Q 009550 233 GCD---GGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSF 287 (532)
Q Consensus 233 G~~---~~~~~f~G~S~I~-p~G~ila~~~~f~e~~~~iv~a~iDl~~~~~~R~~~~~~ 287 (532)
|.+ +++..|.|.|+|+ |+|+++++++.++ ++++++++|++.++..|.+.+.+
T Consensus 213 G~~~~~~~~~~~~G~S~i~~p~G~il~~~~~~~---e~~~~~~id~~~~~~~r~~~~~~ 268 (279)
T TIGR03381 213 GTEVGDGGEQTFYGSSFIADHTGELVAEAGRSE---EAVLVATFDLDEIAKQRAAWGFF 268 (279)
T ss_pred cccCCCCCcceEeeeEEEECCCCcEeecCCCCC---CceEEEEeCHHHHHHHHhcCchh
Confidence 987 2467899999999 9999999998775 36999999999999988765554
No 7
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=100.00 E-value=1.9e-44 Score=373.62 Aligned_cols=258 Identities=16% Similarity=0.075 Sum_probs=208.5
Q ss_pred CceEEEEEeccCCC-------CCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcc--cccchhhhHH--HHHHH
Q 009550 2 RLLKVATCNLNNWA-------LDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDH--FLELDTVTHA--WECLK 70 (532)
Q Consensus 2 ~~~rVAlvQ~~~~~-------~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~--~~~~~~~~~~--~~~l~ 70 (532)
|.||||++|+++.. +|+++|++++.+++++|+++|||||||||++++||..... .....+.+.. .+.++
T Consensus 62 ~~~rIAlvQ~~~~~~~~~p~~~d~~~nl~ki~~~i~~Aa~~gadLivfPE~~l~g~~~~~~~~~~~~~~ae~~~~g~~~~ 141 (363)
T cd07587 62 RIVRVGLIQNKIVLPTTAPIAEQREAIHDRIKKIIEAAAMAGVNIICFQEAWTMPFAFCTREKLPWCEFAESAEDGPTTK 141 (363)
T ss_pred ceEEEEEEeccccccccCccccCHHHHHHHHHHHHHHHHHcCCCEEEccccccCCccccccccchHHHHhhccCCChHHH
Confidence 46999999998543 5999999999999999999999999999999999864211 0111122111 12344
Q ss_pred HHHhcccCCCeEEEEceeeeeC---CeeeEEEEEEe-CCEEEEEEecccCCCCCCcccccceeecCCCCcccccccchhh
Q 009550 71 DLLLGDWTDGILCSFGMPVIKG---SERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEI 146 (532)
Q Consensus 71 ~la~~~~~~~i~iivG~~~~~~---~~lyNsa~vi~-~G~il~~y~K~~L~~~g~f~E~~~f~~G~~~~~~~~~~lp~~~ 146 (532)
.|++.+++++++|+.|+.++.+ +++||++++|+ +|+++++|+|+|||.++.|.|+.||.+|+...
T Consensus 142 ~l~~lAk~~~i~Iv~gi~e~~~~~~~~~yNta~vi~~~G~ilg~yrK~hL~~~~~~~E~~~f~~G~~~~----------- 210 (363)
T cd07587 142 FCQELAKKYNMVIVSPILERDEEHGDTIWNTAVVISNSGNVLGKSRKNHIPRVGDFNESTYYMEGNTGH----------- 210 (363)
T ss_pred HHHHHHHHcCcEEEEeeeeeecCCCCcEEEEEEEECCCCCEEeeeeeEecCCCCCccceeEEecCCCCC-----------
Confidence 4555555789999989888753 68999999998 79999999999999888889999999997521
Q ss_pred hhhccCceecccceeEEeCCceEEEEeeccCCCCChHHHHHHhCCCeEEEEcCCCCccccchHHHHHHHHHHHHHcCcEE
Q 009550 147 SVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVY 226 (532)
Q Consensus 147 ~~~~~~~~~p~g~~vf~~~~~riGv~IC~D~~~pe~~~~~la~~GadlIl~psas~~~~g~~~~~~~l~~~rA~e~~~~v 226 (532)
.+|+++++|||++||||+|||+ .++.++++|||||++|++|+...++ ..|..++++||.+|++++
T Consensus 211 -------------~vf~t~~griG~~ICyD~~fPe-~~r~la~~GAdiil~Psa~~~~~~~-~~w~~~~rarAieN~~fV 275 (363)
T cd07587 211 -------------PVFETQFGKIAVNICYGRHHPL-NWLMYGLNGAEIVFNPSATVGALSE-PMWPIEARNAAIANSYFT 275 (363)
T ss_pred -------------ceEEcCCceEEEEEecccCCcH-HHHHHHHcCCcEEEECCCcCCCCch-HHHHHHHHHHHHhcCcEE
Confidence 2899999999999999999996 6789999999999999999864433 355677899999999999
Q ss_pred EEEcCcCCCC---------------CceeeeccEEEE-eCCeEEEeeCCCCCCceeEEEEEeechhhhhhhccCCchh
Q 009550 227 MYSNHQGCDG---------------GRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQ 288 (532)
Q Consensus 227 v~aN~~G~~~---------------~~~~f~G~S~I~-p~G~ila~~~~f~e~~~~iv~a~iDl~~~~~~R~~~~~~~ 288 (532)
+++|++|.+. +...|.|+|+|+ |+|+++++++.++ +++++++||++.+++.|.+.+.+.
T Consensus 276 v~~NrvG~e~~~~~~~~~~g~~~~~~~~~f~G~S~Ii~P~G~il~~~~~~~---E~ll~adiDl~~i~~~R~~~~~~~ 350 (363)
T cd07587 276 VGINRVGTEVFPNEFTSGDGKPAHKDFGHFYGSSYVAAPDGSRTPGLSRTR---DGLLVAELDLNLCRQVKDKWGFRM 350 (363)
T ss_pred EEeccccccccccccccccccccccccccccceeEEECCCCCCccCCCCCC---CcEEEEEecHHHHHHHHhcCCCCc
Confidence 9999999651 114689999999 9999998876554 479999999999999888765543
No 8
>PRK10438 C-N hydrolase family amidase; Provisional
Probab=100.00 E-value=6e-44 Score=354.83 Aligned_cols=246 Identities=15% Similarity=0.158 Sum_probs=200.3
Q ss_pred CCceEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhhHHHHHHHHHHhcccCCC
Q 009550 1 MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDG 80 (532)
Q Consensus 1 m~~~rVAlvQ~~~~~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~ 80 (532)
|++||||++|+++..+|++.|++++.+++++| +|+|||||||++++||...+...... .....+.++++|+ +++
T Consensus 1 m~~mkia~~Q~~~~~~d~~~Nl~~~~~~i~~a--~gadLivfPE~~~~Gy~~~~~~~~~~-~~~~~~~l~~~A~---~~~ 74 (256)
T PRK10438 1 MSGLKITLLQQPLVWMDGPANLRHFDRQLEGI--TGRDVIVLPEMFTTGFAMEAAASSLP-QDDVVAWMTAKAQ---QTN 74 (256)
T ss_pred CCCCEEEEEEecCccCCHHHHHHHHHHHHHhc--cCCCEEEeCCcccCCCcccchhhccc-cchHHHHHHHHHH---HcC
Confidence 88899999999998899999999999999875 69999999999999998755321110 1223445666665 567
Q ss_pred eEEEEcee-eeeCCeeeEEEEEEe-CCEEEEEEecccCCCCCCcccccceeecCCCCcccccccchhhhhhccCceeccc
Q 009550 81 ILCSFGMP-VIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFG 158 (532)
Q Consensus 81 i~iivG~~-~~~~~~lyNsa~vi~-~G~il~~y~K~~L~~~g~f~E~~~f~~G~~~~~~~~~~lp~~~~~~~~~~~~p~g 158 (532)
+ +++|.+ ++.++++|||+++|+ +|. ++.|+|+||++. +.|..||+||+..
T Consensus 75 ~-~i~g~~~~~~~~~~~Nsa~vi~~~G~-~~~y~K~hL~~~--~~E~~~f~~G~~~------------------------ 126 (256)
T PRK10438 75 A-LIAGSVALQTESGAVNRFLLVEPGGT-VHFYDKRHLFRM--ADEHLHYKAGNAR------------------------ 126 (256)
T ss_pred e-EEEEEEEEecCCCeEEEEEEEcCCCC-EEEEeeeecCCC--CCccceecCCCCc------------------------
Confidence 6 456765 445677999999999 565 689999999753 4788999999764
Q ss_pred ceeEEeCCceEEEEeeccCCCCChHHHHHHhCCCeEEEEcCCCCccccchHHHHHHHHHHHHHcCcEEEEEcCcCCCCCc
Q 009550 159 YGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGR 238 (532)
Q Consensus 159 ~~vf~~~~~riGv~IC~D~~~pe~~~~~la~~GadlIl~psas~~~~g~~~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~ 238 (532)
.+|+++++|||++||||+|||| ..|.+ +|||+|++|++||.... ..|..++++||.||++++++||++|.++++
T Consensus 127 -~v~~~~~~~iG~~ICyD~~fPe-~~r~l--~gad~i~~~s~~~~~~~--~~~~~~~~aRA~En~~~vv~~n~~G~~~~~ 200 (256)
T PRK10438 127 -VIVEWRGWRILPLVCYDLRFPV-WSRNR--NDYDLALYVANWPAPRS--LHWQTLLTARAIENQAYVAGCNRVGSDGNG 200 (256)
T ss_pred -eEEEECCEEEEEEEEeecCCHH-HHHhh--cCCCEEEEecCCCCCch--HHHHHHHHHHHHhcCcEEEEecccccCCCC
Confidence 2899999999999999999996 45554 79999999999886432 346667899999999999999999987445
Q ss_pred eeeeccEEEE-eCCeEEEeeCCCCCCceeEEEEEeechhhhhhhccCCchhh
Q 009550 239 LYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQE 289 (532)
Q Consensus 239 ~~f~G~S~I~-p~G~ila~~~~f~e~~~~iv~a~iDl~~~~~~R~~~~~~~~ 289 (532)
..|.|+|+|+ |+|+++++++.++ ++++++++|++.+++.|...+.+++
T Consensus 201 ~~~~G~S~ivdP~G~vl~~~~~~~---e~~i~~~idl~~~~~~R~~~~~l~~ 249 (256)
T PRK10438 201 HHYRGDSRIINPQGEIIATAEPHQ---ATRIDAELSLEALQEYREKFPAWRD 249 (256)
T ss_pred CEEcCceEEECCCCcEEEEcCCCC---cEEEEEEECHHHHHHHHHhCCcccc
Confidence 7899999999 9999999987764 3799999999999999987666543
No 9
>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=5.4e-44 Score=357.80 Aligned_cols=251 Identities=24% Similarity=0.322 Sum_probs=215.0
Q ss_pred EEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhhHHHHHHHHHHhcccCCCeEEE
Q 009550 5 KVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCS 84 (532)
Q Consensus 5 rVAlvQ~~~~~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~ii 84 (532)
|||++|+++..+|++.|++++.+++++|+++|+|||||||+++|||.+.+.+.+.. .....+.++.|++.+ .+++++
T Consensus 1 kia~~q~~~~~~~~~~n~~~~~~~i~~A~~~ga~liv~PE~~~~g~~~~~~~~~~~-~~~~~~~~~~l~~~a--~~~~ii 77 (269)
T cd07586 1 RVAIAQIDPVLGDVEENLEKHLEIIETARERGADLVVFPELSLTGYNLGDLVYEVA-MHADDPRLQALAEAS--GGICVV 77 (269)
T ss_pred CEEEEecCCccCcHHHHHHHHHHHHHHHHHcCCCEEEecchhccCCCchhhhhhhh-cccchHHHHHHHHHc--CCCEEE
Confidence 69999999999999999999999999999999999999999999999876543211 111335677787764 278999
Q ss_pred EceeeeeC-CeeeEEEEEEeCCEEEEEEecccCCCCCCcccccceeecCCCCcccccccchhhhhhccCceecccceeEE
Q 009550 85 FGMPVIKG-SERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQ 163 (532)
Q Consensus 85 vG~~~~~~-~~lyNsa~vi~~G~il~~y~K~~L~~~g~f~E~~~f~~G~~~~~~~~~~lp~~~~~~~~~~~~p~g~~vf~ 163 (532)
+|++++.+ +++||++++|.+|+++++|+|+|||+++.|.|..||++|+.. .+|+
T Consensus 78 ~G~~~~~~~~~~yNt~~vi~~G~i~~~y~K~~lp~~~~~~e~~~~~~G~~~-------------------------~vf~ 132 (269)
T cd07586 78 FGFVEEGRDGRFYNSAAYLEDGRVVHVHRKVYLPTYGLFEEGRYFAPGSHL-------------------------RAFD 132 (269)
T ss_pred EeCeEEcCCCcEEEEEEEecCCEEEEEEEeEeCCCCCccceeeeecCCCcc-------------------------eEEE
Confidence 99998864 899999999999999999999999988888899999999764 2899
Q ss_pred eCCceEEEEeeccCCCCChHHHHHHhCCCeEEEEcCCCCcccc-----chHHHHHHHHHHHHHcCcEEEEEcCcCCCCCc
Q 009550 164 FLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLR-----KLDYRIRAFISATHSRGGVYMYSNHQGCDGGR 238 (532)
Q Consensus 164 ~~~~riGv~IC~D~~~pe~~~~~la~~GadlIl~psas~~~~g-----~~~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~ 238 (532)
++++|||++||+|+|||+ +.+.++.+|||+|++|+++++... ...+|..+.+.||.++++++++||++|.+ ++
T Consensus 133 ~~~~~ig~~IC~D~~fp~-~~~~~~~~ga~lil~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~-~~ 210 (269)
T cd07586 133 TRFGRAGVLICEDAWHPS-LPYLLALDGADVIFIPANSPARGVGGDFDNEENWETLLKFYAMMNGVYVVFANRVGVE-DG 210 (269)
T ss_pred eCCeEEEEEEEeccCCcH-HHHHHHHCCCCEEEEeCCCccccCccccchhHHHHHHHHHHHHHhCCeEEEEeeecCc-CC
Confidence 999999999999999996 567899999999999999887432 22356678899999999999999999998 66
Q ss_pred eeeeccEEEE-eCCeEEEeeCCCCCCceeEEEEEeechhhhhhhccCCchh
Q 009550 239 LYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQ 288 (532)
Q Consensus 239 ~~f~G~S~I~-p~G~ila~~~~f~e~~~~iv~a~iDl~~~~~~R~~~~~~~ 288 (532)
..|.|+|+|+ |+|+++++.+.++ +++++++||++.+++.|.+.+.+.
T Consensus 211 ~~~~G~S~ii~p~G~il~~~~~~~---~~~~~~~id~~~~~~~r~~~~~~~ 258 (269)
T cd07586 211 VYFWGGSRVVDPDGEVVAEAPLFE---EDLLVAELDRSAIRRARFFSPTFR 258 (269)
T ss_pred ceEeCCcEEECCCCCEEEecCCcc---ccEEEEEecHHHHHHHHhhCcccc
Confidence 7788999999 9999999998775 369999999999998888766653
No 10
>cd07576 R-amidase_like Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl
Probab=100.00 E-value=2.9e-44 Score=356.60 Aligned_cols=247 Identities=23% Similarity=0.238 Sum_probs=209.8
Q ss_pred EEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhhHHHHHHHHHHhcccCCCeEEE
Q 009550 5 KVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCS 84 (532)
Q Consensus 5 rVAlvQ~~~~~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~ii 84 (532)
|||++|+++..+|++.|++++.+++++|+++|+|||||||++++||.+.+.+.+.. .....+.++.+.+.+++++++++
T Consensus 1 kva~~Q~~~~~~d~~~n~~~i~~~i~~a~~~ga~lvv~PE~~l~g~~~~~~~~~~~-~~~~~~~~~~l~~~a~~~~~~ii 79 (254)
T cd07576 1 RLALYQGPARDGDVAANLARLDEAAARAAAAGADLLVFPELFLTGYNIGDAVARLA-EPADGPALQALRAIARRHGIAIV 79 (254)
T ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHHHcCCCEEEccCccccCCCCcchhhhhh-cccCChHHHHHHHHHHHcCCEEE
Confidence 79999999989999999999999999999999999999999999998866543221 11111234444444457899999
Q ss_pred EceeeeeCCeeeEEEEEEe-CCEEEEEEecccCCCCCCcccccceeecCCCCcccccccchhhhhhccCceecccceeEE
Q 009550 85 FGMPVIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQ 163 (532)
Q Consensus 85 vG~~~~~~~~lyNsa~vi~-~G~il~~y~K~~L~~~g~f~E~~~f~~G~~~~~~~~~~lp~~~~~~~~~~~~p~g~~vf~ 163 (532)
+|++++.++++||++++|+ +|++++.|+|.||++ +.|.+||++|+.. .+|+
T Consensus 80 ~G~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l~~---~~E~~~~~~G~~~-------------------------~v~~ 131 (254)
T cd07576 80 VGYPERAGGAVYNAAVLIDEDGTVLANYRKTHLFG---DSERAAFTPGDRF-------------------------PVVE 131 (254)
T ss_pred EeccccCCCceEEEEEEECCCCCEeeEEEeeccCC---cchhhhccCCCCc-------------------------eEEE
Confidence 9999988889999999997 799999999999986 3588999999763 2899
Q ss_pred eCCceEEEEeeccCCCCChHHHHHHhCCCeEEEEcCCCCccccchHHHHHHHHHHHHHcCcEEEEEcCcCCCCCceeeec
Q 009550 164 FLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDG 243 (532)
Q Consensus 164 ~~~~riGv~IC~D~~~pe~~~~~la~~GadlIl~psas~~~~g~~~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~f~G 243 (532)
++++|+|++||+|+|||+ +.+.++++|||+|++|++++...+ .++..+++.||.||+++++++|++|.+ ++..|.|
T Consensus 132 ~~~~kig~~IC~D~~fpe-~~~~~~~~gadii~~p~~~~~~~~--~~~~~~~~~rA~en~~~vv~an~~G~~-~~~~~~G 207 (254)
T cd07576 132 LRGLRVGLLICYDVEFPE-LVRALALAGADLVLVPTALMEPYG--FVARTLVPARAFENQIFVAYANRCGAE-DGLTYVG 207 (254)
T ss_pred ECCeEEEEEEeecCCCCH-HHHHHHHCCCCEEEECCccCCCcc--hhhhhhhHHHHHhCCCEEEEEcccCCC-CCceeee
Confidence 999999999999999997 678999999999999998875554 356678899999999999999999988 6778999
Q ss_pred cEEEE-eCCeEEEeeCCCCCCceeEEEEEeechhhhhhhccCCchh
Q 009550 244 CSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQ 288 (532)
Q Consensus 244 ~S~I~-p~G~ila~~~~f~e~~~~iv~a~iDl~~~~~~R~~~~~~~ 288 (532)
+|+|+ |+|+++++++.+ +++++++||++.++..|.+.+.+.
T Consensus 208 ~S~i~~p~G~il~~~~~~----e~~~~~~id~~~~~~~R~~~~~~~ 249 (254)
T cd07576 208 LSSIAGPDGTVLARAGRG----EALLVADLDPAALAAARRENPYLA 249 (254)
T ss_pred eeEEECCCCCEeEecCCC----CeEEEEEcCHHHHHhhhhcCchhh
Confidence 99999 999999998875 269999999999999998765544
No 11
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=100.00 E-value=1.7e-43 Score=357.69 Aligned_cols=256 Identities=20% Similarity=0.173 Sum_probs=210.4
Q ss_pred CceEEEEEeccCC-------CCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhhHH-----HHHH
Q 009550 2 RLLKVATCNLNNW-------ALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHA-----WECL 69 (532)
Q Consensus 2 ~~~rVAlvQ~~~~-------~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~~~~~~~~-----~~~l 69 (532)
|.||||++|+++. .++.+.|++++.+++++|+++|||||||||++++||.+.+.. ..+.+.+ .+.+
T Consensus 2 ~~~rva~vQ~~~~~~~~~~~~~~~~~nl~~~~~~i~~A~~~gadlvvfPE~~~~g~~~~~~~--~~~~~~~~~~~~~~~~ 79 (287)
T cd07568 2 RIVRVGLIQASNVIPTDAPIEKQKEAMIQKHVTMIREAAEAGAQIVCLQEIFYGPYFCAEQD--TKWYEFAEEIPNGPTT 79 (287)
T ss_pred ceEEEEEEEeecccccccccccCHHHHHHHHHHHHHHHHHcCCcEEEcccccCCCCCccccc--cchhhhcccCCCChHH
Confidence 6899999999976 489999999999999999999999999999999999764421 1111111 1234
Q ss_pred HHHHhcccCCCeEEEEceeeee-CCeeeEEEEEEe-CCEEEEEEecccCCCCCCcccccceeecCCCCcccccccchhhh
Q 009550 70 KDLLLGDWTDGILCSFGMPVIK-GSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEIS 147 (532)
Q Consensus 70 ~~la~~~~~~~i~iivG~~~~~-~~~lyNsa~vi~-~G~il~~y~K~~L~~~g~f~E~~~f~~G~~~~~~~~~~lp~~~~ 147 (532)
+.|++.++++++++++|+.++. ++++||++++|+ +|++++.|+|+|||++++|.|.+||++|+...
T Consensus 80 ~~l~~~a~~~~i~ii~g~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~~~~e~~~f~~G~~~~------------ 147 (287)
T cd07568 80 KRFAALAKEYNMVLILPIYEKEQGGTLYNTAAVIDADGTYLGKYRKNHIPHVGGFWEKFYFRPGNLGY------------ 147 (287)
T ss_pred HHHHHHHHHCCEEEEEEeEEEcCCCcEEEEEEEECCCCcEeeEEeeeecCCCCccceeeeecCCCCCC------------
Confidence 4555555578999999988764 478999999998 89999999999999999999999999997421
Q ss_pred hhccCceecccceeEEeCCceEEEEeeccCCCCChHHHHHHhCCCeEEEEcCCCCccccchHHHHHHHHHHHHHcCcEEE
Q 009550 148 VALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYM 227 (532)
Q Consensus 148 ~~~~~~~~p~g~~vf~~~~~riGv~IC~D~~~pe~~~~~la~~GadlIl~psas~~~~g~~~~~~~l~~~rA~e~~~~vv 227 (532)
.+|+++++|+|++||||.|||+ ..|.++++|||+|++|++++..... ..|..+.++||.+++++++
T Consensus 148 ------------~~f~~~~~~iG~~ICyD~~fpe-~~r~la~~Ga~li~~ps~~~~~~~~-~~~~~~~~~rA~en~~~vv 213 (287)
T cd07568 148 ------------PVFDTAFGKIGVYICYDRHFPE-GWRALGLNGAEIVFNPSATVAGLSE-YLWKLEQPAAAVANGYFVG 213 (287)
T ss_pred ------------ceEEcCCceEEEEEEecccCch-HHHHHHHCCCeEEEECCcCCCCCch-hhhHHHHHHHHHHCCcEEE
Confidence 2889999999999999999997 6789999999999999998754332 2344467899999999999
Q ss_pred EEcCcCCCCC--ceeeeccEEEE-eCCeEEEeeCCCCCCceeEEEEEeechhhhhhhccCCchh
Q 009550 228 YSNHQGCDGG--RLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQ 288 (532)
Q Consensus 228 ~aN~~G~~~~--~~~f~G~S~I~-p~G~ila~~~~f~e~~~~iv~a~iDl~~~~~~R~~~~~~~ 288 (532)
++|++|.+.. ...|.|.|+|+ |+|+++++++.++ +++++++||++.++..|.+.+.+.
T Consensus 214 ~~N~~G~~~~~~~~~~~G~S~ii~p~G~il~~~~~~~---~~~l~a~id~~~~~~~R~~~~~~~ 274 (287)
T cd07568 214 AINRVGTEAPWNIGEFYGSSYFVDPRGQFVASASRDK---DELLVAELDLDLIREVRDTWQFYR 274 (287)
T ss_pred EeccccccCCCccceEeceeEEECCCceEEEecCCCC---CeEEEEEecHHHHHHHHhhCchhh
Confidence 9999997632 25789999999 9999999998775 379999999999998887655443
No 12
>COG0388 Predicted amidohydrolase [General function prediction only]
Probab=100.00 E-value=9.3e-43 Score=349.92 Aligned_cols=255 Identities=27% Similarity=0.308 Sum_probs=209.7
Q ss_pred ceEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCc-ccccchhhhHHHHHHHHHHhcccCCCe
Q 009550 3 LLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCED-HFLELDTVTHAWECLKDLLLGDWTDGI 81 (532)
Q Consensus 3 ~~rVAlvQ~~~~~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d-~~~~~~~~~~~~~~l~~la~~~~~~~i 81 (532)
+||||++|+++..+|+++|++++++++++|+++|||||||||+++|||.+.+ .+.+........+.++.+.+.++. +.
T Consensus 2 ~~rvA~~Q~~~~~~d~~~N~~~~~~~i~~a~~~ga~LvvfPEl~~tgy~~~~~~~~~~~~~~~~~~~~~~l~~~a~~-~~ 80 (274)
T COG0388 2 MMRVAAAQMAPKAGDPAENLARILRLIREAAARGADLVVFPELFLTGYPCEDDLFLEEAAAEAGEETLEFLAALAEE-GG 80 (274)
T ss_pred ceEEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCCCEEECCcccccCCCcccHHHHHhhhhccCChHHHHHHHHHHh-CC
Confidence 6999999999999999999999999999999999999999999999999985 444333333333344555544433 44
Q ss_pred EEEEceeeeeCCeeeEEEEEE-eCCEEEEEEecccCCCCCCcccccceeecCCCCcccccccchhhhhhccCceecccce
Q 009550 82 LCSFGMPVIKGSERYNCQVLC-LNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYG 160 (532)
Q Consensus 82 ~iivG~~~~~~~~lyNsa~vi-~~G~il~~y~K~~L~~~g~f~E~~~f~~G~~~~~~~~~~lp~~~~~~~~~~~~p~g~~ 160 (532)
.+++|.+.......||+++++ .+|+++++|+|+|||++ .|.|+++|.||+... .
T Consensus 81 ~~ivg~~~~~~~~~~~~~~~i~~~G~ii~~y~K~hl~~~-~~~e~~~~~~G~~~~------------------------~ 135 (274)
T COG0388 81 VIIVGGPLPEREKLYNNAALIDPDGEILGKYRKLHLFDA-FYEERRFFTPGDEGV------------------------V 135 (274)
T ss_pred eEEEEeeeeccccceeeEEEEcCCCcEEeEEeeecCCCC-ccchhhhccCCCccc------------------------e
Confidence 566776655443667777666 59999999999999987 678999999998641 2
Q ss_pred eEEeCCceEEEEeeccCCCCChHHHHHHhCCCeEEEEcCCCCccccchHHHHHHHHHHHHHcCcEEEEEcCcCCCCCcee
Q 009550 161 FIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLY 240 (532)
Q Consensus 161 vf~~~~~riGv~IC~D~~~pe~~~~~la~~GadlIl~psas~~~~g~~~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~ 240 (532)
+|+++++|+|+.||+|+||||.....++++|||+|++|++++...+ ..+|..++++||.+|+++++++|++|.+.....
T Consensus 136 v~~~~~~kig~~IC~D~~fPe~~~~~~a~~Gaeii~~p~a~~~~~~-~~~w~~l~~arA~en~~~vv~~n~~g~~~~~~~ 214 (274)
T COG0388 136 VFETDGGKIGLLICYDLRFPELARRLLALGGAELLLVPAAWPAERG-LDHWEVLLRARAIENQVYVLAANRAGFDGAGLE 214 (274)
T ss_pred eEEeCCceEEEEEEeeccCHHHHHHHHHhcCCeEEEEcCCCCCccc-HHHHHHHHHHHhhhcCceEEEecccCCCCCccE
Confidence 8999999999999999999974443448899999999999998776 467778899999999999999999998833388
Q ss_pred eeccEEEE-eCCeEEEeeCCCCCCceeEEEEEeechhhhhhhccCCch
Q 009550 241 FDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSF 287 (532)
Q Consensus 241 f~G~S~I~-p~G~ila~~~~f~e~~~~iv~a~iDl~~~~~~R~~~~~~ 287 (532)
|+|+|+|+ |+|+++++...++ ++++++++|++.+.+.|...+.+
T Consensus 215 ~~G~S~i~~p~G~v~~~~~~~~---e~~~~~~id~~~~~~~r~~~~~~ 259 (274)
T COG0388 215 FCGHSAIIDPDGEVLAEAGEEE---EGVLLADIDLAELAEVRRKIPVL 259 (274)
T ss_pred EecceEEECCCccEEeecCCCC---CcEEEEEECHHHHHHHHhhCcch
Confidence 99999999 9999999998763 47999999999999998876654
No 13
>PLN00202 beta-ureidopropionase
Probab=100.00 E-value=1.4e-42 Score=363.23 Aligned_cols=259 Identities=16% Similarity=0.095 Sum_probs=208.7
Q ss_pred CceEEEEEeccCCC-------CCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccc-ccchhhhHH-HHHHHHH
Q 009550 2 RLLKVATCNLNNWA-------LDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHF-LELDTVTHA-WECLKDL 72 (532)
Q Consensus 2 ~~~rVAlvQ~~~~~-------~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~-~~~~~~~~~-~~~l~~l 72 (532)
+.||||++|+++.. .+++.|++++.+++++|+++|||||||||++++||...... ...++.+.. ...++.+
T Consensus 85 ~~~rValiQ~~i~~~~~~~~~~~~~~nl~~~~~li~~Aa~~gadLVvfPE~~~~g~~~~~~~~~~~~~ae~~~g~~~~~l 164 (405)
T PLN00202 85 RVVRVGLIQNSIALPTTAPFADQKRAIMDKVKPMIDAAGAAGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTKFL 164 (405)
T ss_pred CeEEEEEEecccccCCCCcccCCHHHHHHHHHHHHHHHHHCCCCEEEecchhccccccccccchHHHHhhhCCCHHHHHH
Confidence 46999999999643 58999999999999999999999999999999999641100 001111110 1223344
Q ss_pred HhcccCCCeEEEEceeeee---CCeeeEEEEEEe-CCEEEEEEecccCCCCCCcccccceeecCCCCcccccccchhhhh
Q 009550 73 LLGDWTDGILCSFGMPVIK---GSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISV 148 (532)
Q Consensus 73 a~~~~~~~i~iivG~~~~~---~~~lyNsa~vi~-~G~il~~y~K~~L~~~g~f~E~~~f~~G~~~~~~~~~~lp~~~~~ 148 (532)
++.+++++++|++|+.++. ++++|||+++|+ +|+++++|+|+|||++++|.|+.||.+|+...
T Consensus 165 ~~lA~~~~i~Iv~G~~e~~~~~~~~~yNSa~vI~~~G~iig~YrKiHL~~~g~~~E~~~f~~G~~g~------------- 231 (405)
T PLN00202 165 QELARKYNMVIVSPILERDVNHGETLWNTAVVIGNNGNIIGKHRKNHIPRVGDFNESTYYMEGNTGH------------- 231 (405)
T ss_pred HHHHHHCCeEEEEEeeeeecCCCCcEEEEEEEECCCCcEEEEEecccCCCCCCccccceeecCCCCc-------------
Confidence 4444478999999987764 357999999997 79999999999999999999999999997521
Q ss_pred hccCceecccceeEEeCCceEEEEeeccCCCCChHHHHHHhCCCeEEEEcCCCCccccchHHHHHHHHHHHHHcCcEEEE
Q 009550 149 ALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMY 228 (532)
Q Consensus 149 ~~~~~~~p~g~~vf~~~~~riGv~IC~D~~~pe~~~~~la~~GadlIl~psas~~~~g~~~~~~~l~~~rA~e~~~~vv~ 228 (532)
.+|+++++|||++||||+|||+ .+|.++++|||+|++|++|+...++ ..|..++++||.+|++++++
T Consensus 232 -----------~vf~t~~gkiGv~ICYD~~FPE-~~r~la~~GAdiIl~Psa~~~~~~~-~~w~~~~raRAiEN~~fvv~ 298 (405)
T PLN00202 232 -----------PVFETAFGKIAVNICYGRHHPL-NWLAFGLNGAEIVFNPSATVGDLSE-PMWPIEARNAAIANSYFVGS 298 (405)
T ss_pred -----------eEEEeCCCeEEEEEccccccHH-HHHHHHHCCCcEEEECCCCCCccCH-HHHHHHHHHHHHhcCCEEEE
Confidence 3899999999999999999996 6789999999999999998765433 35667889999999999999
Q ss_pred EcCcCCCC---------------CceeeeccEEEE-eCCeEEEeeCCCCCCceeEEEEEeechhhhhhhccCCchhh
Q 009550 229 SNHQGCDG---------------GRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQE 289 (532)
Q Consensus 229 aN~~G~~~---------------~~~~f~G~S~I~-p~G~ila~~~~f~e~~~~iv~a~iDl~~~~~~R~~~~~~~~ 289 (532)
+|++|.+. +...|.|+|+|+ |+|+++++++.++ +++++++||++.+++.|.+.+.+.+
T Consensus 299 aNrvG~~~~~~~~~~~~g~~~~~~~~~f~G~S~Iv~P~G~vla~~~~~~---E~llvadIDl~~v~~~R~~~~~~~~ 372 (405)
T PLN00202 299 INRVGTEVFPNPFTSGDGKPQHKDFGHFYGSSHFSAPDASCTPSLSRYK---DGLLISDMDLNLCRQLKDKWGFRMT 372 (405)
T ss_pred eccccccccccccccccccccccccccccceeEEEcCCCCEeccCCCCC---CcEEEEEeCHHHHHHHHHhCCcccc
Confidence 99999752 114689999999 9999999887554 3699999999999999988776554
No 14
>PLN02747 N-carbamolyputrescine amidase
Probab=100.00 E-value=1.5e-42 Score=352.14 Aligned_cols=256 Identities=19% Similarity=0.232 Sum_probs=208.9
Q ss_pred CceEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcc----cccchhhhHHHHHHHHHHhccc
Q 009550 2 RLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDH----FLELDTVTHAWECLKDLLLGDW 77 (532)
Q Consensus 2 ~~~rVAlvQ~~~~~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~----~~~~~~~~~~~~~l~~la~~~~ 77 (532)
|+||||++|+++ .+|++.|++++.+++++|++.|||||||||++++||.+.+. +......+. .+.++.+.+.++
T Consensus 5 ~~~~va~~Q~~~-~~d~~~N~~~i~~~i~~A~~~gadlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~a~ 82 (296)
T PLN02747 5 RKVVVAALQFAC-SDDRAANVDKAERLVREAHAKGANIILIQELFEGYYFCQAQREDFFQRAKPYEG-HPTIARMQKLAK 82 (296)
T ss_pred cceEEEEEEecC-CCCHHHHHHHHHHHHHHHHHCCCcEEEcccccCCCCCccccccchhhhcccCCC-ChHHHHHHHHHH
Confidence 579999999997 58999999999999999999999999999999999986521 111111110 123444554455
Q ss_pred CCCeEEEEceeeeeCCeeeEEEEEEe-CCEEEEEEecccCCCCCCcccccceeecCCCCcccccccchhhhhhccCceec
Q 009550 78 TDGILCSFGMPVIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVP 156 (532)
Q Consensus 78 ~~~i~iivG~~~~~~~~lyNsa~vi~-~G~il~~y~K~~L~~~g~f~E~~~f~~G~~~~~~~~~~lp~~~~~~~~~~~~p 156 (532)
++++++++|++++.++++||++++|+ +|+++++|+|.|||....+.|+.||++|+...
T Consensus 83 ~~~i~i~~g~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~~~~e~~~~~~G~~~~--------------------- 141 (296)
T PLN02747 83 ELGVVIPVSFFEEANNAHYNSIAIIDADGTDLGLYRKSHIPDGPGYQEKFYFNPGDTGF--------------------- 141 (296)
T ss_pred HcCeEEEeeeeecCCCceEEEEEEECCCCCCcceEEEEecCCCCCccceeeecCCCCCC---------------------
Confidence 68999999998888889999999997 89999999999998766677889999987421
Q ss_pred ccceeEEeCCceEEEEeeccCCCCChHHHHHHhCCCeEEEEcCCCCcc-----ccchHHHHHHHHHHHHHcCcEEEEEcC
Q 009550 157 FGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQ-----LRKLDYRIRAFISATHSRGGVYMYSNH 231 (532)
Q Consensus 157 ~g~~vf~~~~~riGv~IC~D~~~pe~~~~~la~~GadlIl~psas~~~-----~g~~~~~~~l~~~rA~e~~~~vv~aN~ 231 (532)
.+|+++++|+|++||+|.|||+ ..+.++.+|||+|++|++++.. ..+...|..+++++|.+|+++++++|+
T Consensus 142 ---~~~~~~~~rig~~IC~D~~fpe-~~r~~~~~Ga~lil~ps~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~N~ 217 (296)
T PLN02747 142 ---KVFDTKFAKIGVAICWDQWFPE-AARAMVLQGAEVLLYPTAIGSEPQDPGLDSRDHWKRVMQGHAGANLVPLVASNR 217 (296)
T ss_pred ---eeEEcCCccEEEEEEccccchH-HHHHHHHCCCCEEEEeCccCCCCcccccchHHHHHHHHHHHHHHcCCeEEEEec
Confidence 2899999999999999999996 6789999999999999997432 123345667789999999999999999
Q ss_pred cCCC------C-CceeeeccEEEE-eCCeEEEeeCCCCCCceeEEEEEeechhhhhhhccCCch
Q 009550 232 QGCD------G-GRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSF 287 (532)
Q Consensus 232 ~G~~------~-~~~~f~G~S~I~-p~G~ila~~~~f~e~~~~iv~a~iDl~~~~~~R~~~~~~ 287 (532)
+|.+ + .+..|.|+|+|+ |+|+++++++.++ +++++++||++.++..|...+.+
T Consensus 218 ~G~~~~~~~~g~~~~~~~G~S~i~~p~G~vl~~~~~~~---e~~~~adid~~~~~~~r~~~~~~ 278 (296)
T PLN02747 218 IGTEILETEHGPSKITFYGGSFIAGPTGEIVAEADDKA---EAVLVAEFDLDQIKSKRASWGVF 278 (296)
T ss_pred ccccccccccCCcCceEeeeeEEECCCCCEeecCCCCC---CcEEEEEEcHHHHHHHHHhCCch
Confidence 9963 1 257899999999 9999999998764 36999999999999888765544
No 15
>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases). DCase hydrolyses N-carbamyl-D-amino acids to produce D-amino acids. It is an important biocatalyst in the pharmaceutical industry, producing useful D-amino acids for example in the preparation of beta-lactam antibiotics. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 6. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Agrobacterium radiobacter DCase forms a tetramer (dimer of dimers). Some DCases may form trimers.
Probab=100.00 E-value=2.2e-42 Score=351.99 Aligned_cols=252 Identities=19% Similarity=0.218 Sum_probs=201.8
Q ss_pred CceEEEEEeccCCCC--CHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccc----chhhhH--HHHHHHHHH
Q 009550 2 RLLKVATCNLNNWAL--DFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLE----LDTVTH--AWECLKDLL 73 (532)
Q Consensus 2 ~~~rVAlvQ~~~~~~--d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~----~~~~~~--~~~~l~~la 73 (532)
|+||||++|+++..+ +.+.|++++.+++++|+++|||||||||++++||.+.+.... ..+.+. ..+.++.|+
T Consensus 2 ~~~rva~~Q~~~~~~~~~~~~n~~~i~~~i~~A~~~gadlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 81 (302)
T cd07569 2 RQVILAAAQMGPIARAETRESVVARLIALLEEAASRGAQLVVFPELALTTFFPRWYFPDEAELDSFFETEMPNPETQPLF 81 (302)
T ss_pred ceEEEEEEeeccccccCCHHHHHHHHHHHHHHHHhCCCcEEEcccccccCcccccccCChHHhhhhhhhcCCChhHHHHH
Confidence 679999999998866 899999999999999999999999999999999975432211 111111 012344455
Q ss_pred hcccCCCeEEEEceeeee-CC---eeeEEEEEEe-CCEEEEEEecccCCCCCCcc--------cccceeecC-CCCcccc
Q 009550 74 LGDWTDGILCSFGMPVIK-GS---ERYNCQVLCL-NRKIIMIRPKLWLANDGNYR--------ELRWFTAWK-QKDQLED 139 (532)
Q Consensus 74 ~~~~~~~i~iivG~~~~~-~~---~lyNsa~vi~-~G~il~~y~K~~L~~~g~f~--------E~~~f~~G~-~~~~~~~ 139 (532)
+.++++++++++|++++. ++ ++||++++|+ +|+++++|+|+|||++++|. |+.||++|+ ..
T Consensus 82 ~~a~~~~i~iv~G~~~~~~~~~~~~~yNsa~~i~~~G~i~~~y~K~~l~~~~e~~p~~~~~~~e~~~~~~G~~~~----- 156 (302)
T cd07569 82 DRAKELGIGFYLGYAELTEDGGVKRRFNTSILVDKSGKIVGKYRKVHLPGHKEPEPYRPFQHLEKRYFEPGDLGF----- 156 (302)
T ss_pred HHHHHhCeEEEEeceeecCCCCcceeeeEEEEECCCCCEeeeeeEEecCCCcccCcccccccccccccCCCCCCC-----
Confidence 555578999999998763 44 8999999996 79999999999999988764 556677665 22
Q ss_pred cccchhhhhhccCceecccceeEEeCCceEEEEeeccCCCCChHHHHHHhCCCeEEEEcCCCCccc------cc--hHHH
Q 009550 140 FQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQL------RK--LDYR 211 (532)
Q Consensus 140 ~~lp~~~~~~~~~~~~p~g~~vf~~~~~riGv~IC~D~~~pe~~~~~la~~GadlIl~psas~~~~------g~--~~~~ 211 (532)
.+|+++++|||++||+|+|||+ ..|.++.+|||||++|+++++.. .. ..++
T Consensus 157 --------------------~v~~~~~~rig~~IC~D~~fpe-~~r~~a~~Ga~lll~~~~~~~~~~~~~~~~~~~~~~~ 215 (302)
T cd07569 157 --------------------PVFRVPGGIMGMCICNDRRWPE-TWRVMGLQGVELVLLGYNTPTHNPPAPEHDHLRLFHN 215 (302)
T ss_pred --------------------ceEecCCceEEEEEeeccccch-HHHHHHHCCCcEEEeecCCcccCCCccccchhhHHHH
Confidence 3899999999999999999997 57899999999999987654321 11 1133
Q ss_pred HHHHHHHHHHcCcEEEEEcCcCCCCCceeeeccEEEE-eCCeEEEeeCCCCCCceeEEEEEeechhhhhhhcc
Q 009550 212 IRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGS 283 (532)
Q Consensus 212 ~~l~~~rA~e~~~~vv~aN~~G~~~~~~~f~G~S~I~-p~G~ila~~~~f~e~~~~iv~a~iDl~~~~~~R~~ 283 (532)
....++||.||+++++++|++|.+ ++..|.|+|.|+ |+|+++++++.++ +++++++||++.+++.|..
T Consensus 216 ~~~~~arA~en~~~vv~~n~~G~~-~~~~~~G~S~ii~p~G~vla~~~~~~---e~~~~a~id~~~~~~~r~~ 284 (302)
T cd07569 216 LLSMQAGAYQNGTWVVAAAKAGME-DGCDLIGGSCIVAPTGEIVAQATTLE---DEVIVADCDLDLCREGRET 284 (302)
T ss_pred HHHHhhhhhcccceEEEeeccccC-CCceEecceEEECCCCCEEEecCCCC---CcEEEEEecHHHhhhcccc
Confidence 345678999999999999999988 567899999999 9999999998875 3699999999999888764
No 16
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=2.7e-42 Score=342.41 Aligned_cols=246 Identities=24% Similarity=0.283 Sum_probs=207.6
Q ss_pred EEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccc-chhhhHHHHHHHHHHhcccCCCeEE
Q 009550 5 KVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLE-LDTVTHAWECLKDLLLGDWTDGILC 83 (532)
Q Consensus 5 rVAlvQ~~~~~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~-~~~~~~~~~~l~~la~~~~~~~i~i 83 (532)
|||++|+++..+|++.|++++.+++++|+++|+|||||||++++||.+.+.... ........+.+.+++ +++++++
T Consensus 1 rva~~Q~~~~~~d~~~n~~~i~~~i~~A~~~g~dlvv~PE~~l~g~~~~~~~~~~~~~~~~~~~~l~~~a---~~~~~~i 77 (253)
T cd07583 1 KIALIQLDIVWGDPEANIERVESLIEEAAAAGADLIVLPEMWNTGYFLDDLYELADEDGGETVSFLSELA---KKHGVNI 77 (253)
T ss_pred CEEEEEeecCcCCHHHHHHHHHHHHHHHHHCCCCEEEcCCccCCCCChhhHHhhhcccCchHHHHHHHHH---HHcCcEE
Confidence 699999999999999999999999999999999999999999999987654322 112223344455555 4689999
Q ss_pred EEcee-eeeCCeeeEEEEEEe-CCEEEEEEecccCCCCCCcccccceeecCCCCcccccccchhhhhhccCceeccccee
Q 009550 84 SFGMP-VIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGF 161 (532)
Q Consensus 84 ivG~~-~~~~~~lyNsa~vi~-~G~il~~y~K~~L~~~g~f~E~~~f~~G~~~~~~~~~~lp~~~~~~~~~~~~p~g~~v 161 (532)
++|++ +..++++|||+++|+ +|++++.|+|+||+++ +.|.+||++|+.. .+
T Consensus 78 v~G~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l~~~--~~e~~~~~~G~~~-------------------------~v 130 (253)
T cd07583 78 VAGSVAEKEGGKLYNTAYVIDPDGELIATYRKIHLFGL--MGEDKYLTAGDEL-------------------------EV 130 (253)
T ss_pred EeceEEecCCCcEEEEEEEECCCCcEEEEEeeeeCCCC--cCchhhccCCCCc-------------------------eE
Confidence 99975 456679999999998 7999999999999986 4688999999753 28
Q ss_pred EEeCCceEEEEeeccCCCCChHHHHHHhCCCeEEEEcCCCCccccchHHHHHHHHHHHHHcCcEEEEEcCcCCCCCceee
Q 009550 162 IQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYF 241 (532)
Q Consensus 162 f~~~~~riGv~IC~D~~~pe~~~~~la~~GadlIl~psas~~~~g~~~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~f 241 (532)
|+++++|+|++||+|+|||+ ..+.++++|||+|++|++|+.. ....|..+.+.||.||+++++++|++|.+ ++..|
T Consensus 131 ~~~~~~rig~~IC~D~~~pe-~~r~~~~~ga~ll~~ps~~~~~--~~~~~~~~~~~rA~en~~~vv~~n~~G~~-~~~~~ 206 (253)
T cd07583 131 FELDGGKVGLFICYDLRFPE-LFRKLALEGAEILFVPAEWPAA--RIEHWRTLLRARAIENQAFVVACNRVGTD-GGNEF 206 (253)
T ss_pred EEeCCeEEEEEEEeccccHH-HHHHHHHcCCcEEEECCCCCCC--chHHHHHHHHHHHHHhCCEEEEEcCcccC-CCcee
Confidence 99999999999999999996 7889999999999999997643 23445567789999999999999999998 56789
Q ss_pred eccEEEE-eCCeEEEeeCCCCCCceeEEEEEeechhhhhhhccCCchh
Q 009550 242 DGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQ 288 (532)
Q Consensus 242 ~G~S~I~-p~G~ila~~~~f~e~~~~iv~a~iDl~~~~~~R~~~~~~~ 288 (532)
.|.|+|+ |+|+++++++. + ++++++++|++.++..|...+.+.
T Consensus 207 ~G~S~ii~p~G~il~~~~~-~---~~~~~~~i~l~~~~~~r~~~~~~~ 250 (253)
T cd07583 207 GGHSMVIDPWGEVLAEAGE-E---EEILTAEIDLEEVAEVRKKIPVFK 250 (253)
T ss_pred cceeEEECCCchhheecCC-C---ceEEEEEecHHHHHHHHHhCCchh
Confidence 9999999 99999999876 2 479999999999999998766554
No 17
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases). CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.
Probab=100.00 E-value=4.4e-42 Score=346.72 Aligned_cols=253 Identities=22% Similarity=0.233 Sum_probs=209.3
Q ss_pred eEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhhHH-----HHHHHHHHhcccC
Q 009550 4 LKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHA-----WECLKDLLLGDWT 78 (532)
Q Consensus 4 ~rVAlvQ~~~~~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~~~~~~~~-----~~~l~~la~~~~~ 78 (532)
||||++|+++. +|++.|++++.+++++|++.|+|||||||++++||.+.+.... +...+ .+.++.+.+.+++
T Consensus 1 ~~ia~~Q~~~~-~d~~~n~~~~~~~i~~A~~~gadlivfPE~~l~g~~~~~~~~~--~~~~~~~~~~~~~~~~l~~la~~ 77 (284)
T cd07573 1 VTVALVQMACS-EDPEANLAKAEELVREAAAQGAQIVCLQELFETPYFCQEEDED--YFDLAEPPIPGPTTARFQALAKE 77 (284)
T ss_pred CEEEEEEeecc-CCHHHHHHHHHHHHHHHHHCCCcEEEccccccCCCCcccccch--hHHhccccCCCHHHHHHHHHHHH
Confidence 68999999985 9999999999999999999999999999999999988653211 11111 1233444444446
Q ss_pred CCeEEEEceeeee-CCeeeEEEEEEe-CCEEEEEEecccCCCCCCcccccceeecCCCCcccccccchhhhhhccCceec
Q 009550 79 DGILCSFGMPVIK-GSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVP 156 (532)
Q Consensus 79 ~~i~iivG~~~~~-~~~lyNsa~vi~-~G~il~~y~K~~L~~~g~f~E~~~f~~G~~~~~~~~~~lp~~~~~~~~~~~~p 156 (532)
+++++++|++++. ++++||++++|+ +|+++++|+|.|||..+.+.|..||.+|+...
T Consensus 78 ~~i~iv~g~~~~~~~~~~yNs~~v~~~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~~~--------------------- 136 (284)
T cd07573 78 LGVVIPVSLFEKRGNGLYYNSAVVIDADGSLLGVYRKMHIPDDPGYYEKFYFTPGDTGF--------------------- 136 (284)
T ss_pred CCEEEEecceeeCCCCcEEEEEEEECCCCCEEeEEeeeccCCCCcccccceecCCCCCC---------------------
Confidence 8999999998775 468999999998 79999999999999766678999999997321
Q ss_pred ccceeEEeCCceEEEEeeccCCCCChHHHHHHhCCCeEEEEcCCCCcccc-------chHHHHHHHHHHHHHcCcEEEEE
Q 009550 157 FGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLR-------KLDYRIRAFISATHSRGGVYMYS 229 (532)
Q Consensus 157 ~g~~vf~~~~~riGv~IC~D~~~pe~~~~~la~~GadlIl~psas~~~~g-------~~~~~~~l~~~rA~e~~~~vv~a 229 (532)
.+|+++++|+|++||+|.|||+ +.+.++++|||+|++|+++++..+ ....|..+.+.||.|+++++++|
T Consensus 137 ---~~~~~~~~~ig~~IC~D~~fpe-~~r~~~~~gadlil~ps~~~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~a 212 (284)
T cd07573 137 ---KVFDTRYGRIGVLICWDQWFPE-AARLMALQGAEILFYPTAIGSEPQEPPEGLDQRDAWQRVQRGHAIANGVPVAAV 212 (284)
T ss_pred ---ceEecCCceEEEEEeccccchH-HHHHHHHCCCCEEEecCcccCCCCCccccCCchHHHHHHHHHHHHHcCceEEEe
Confidence 2899999999999999999996 678999999999999999876422 33456677889999999999999
Q ss_pred cCcCCCC---CceeeeccEEEE-eCCeEEEeeCCCCCCceeEEEEEeechhhhhhhccCCch
Q 009550 230 NHQGCDG---GRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSF 287 (532)
Q Consensus 230 N~~G~~~---~~~~f~G~S~I~-p~G~ila~~~~f~e~~~~iv~a~iDl~~~~~~R~~~~~~ 287 (532)
|++|.++ .+..|.|+|+|+ |+|+++++.+.++ +++++++||++.++..|...+.+
T Consensus 213 n~~G~~~~~~~~~~~~G~S~i~~p~G~i~~~~~~~~---~~v~~a~id~~~~~~~r~~~~~~ 271 (284)
T cd07573 213 NRVGVEGDPGSGITFYGSSFIADPFGEILAQASRDE---EEILVAEFDLDEIEEVRRAWPFF 271 (284)
T ss_pred ccccccCCCCCCceeeceeEEECCCCCeeeccCCCC---CcEEEEEecHHHHHHHHhhChhh
Confidence 9999873 268899999999 9999999998875 36999999999999988765544
No 18
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t
Probab=100.00 E-value=3.7e-42 Score=343.60 Aligned_cols=249 Identities=20% Similarity=0.190 Sum_probs=208.1
Q ss_pred EEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccc---chhhhHHHHHHHHHHhcccCCCe
Q 009550 5 KVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLE---LDTVTHAWECLKDLLLGDWTDGI 81 (532)
Q Consensus 5 rVAlvQ~~~~~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~---~~~~~~~~~~l~~la~~~~~~~i 81 (532)
|||++|+++. +|++.|++++.+++++|+++|+|||||||++++||.+.+.... ........+.+.++++ ++++
T Consensus 1 kia~~Q~~~~-~d~~~n~~~~~~~i~~A~~~g~dlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~---~~~i 76 (265)
T cd07572 1 RVALIQMTST-ADKEANLARAKELIEEAAAQGAKLVVLPECFNYPGGTDAFKLALAEEEGDGPTLQALSELAK---EHGI 76 (265)
T ss_pred CEEEEEeeCC-CCHHHHHHHHHHHHHHHHHCCCCEEECCccccCcCcchhhhhhhhccccCChHHHHHHHHHH---HCCe
Confidence 6999999987 9999999999999999999999999999999999987664432 2222234444555554 6899
Q ss_pred EEEEc-eeeeeC--CeeeEEEEEEe-CCEEEEEEecccCCCC-----CCcccccceeecCCCCcccccccchhhhhhccC
Q 009550 82 LCSFG-MPVIKG--SERYNCQVLCL-NRKIIMIRPKLWLAND-----GNYRELRWFTAWKQKDQLEDFQLPNEISVALKQ 152 (532)
Q Consensus 82 ~iivG-~~~~~~--~~lyNsa~vi~-~G~il~~y~K~~L~~~-----g~f~E~~~f~~G~~~~~~~~~~lp~~~~~~~~~ 152 (532)
++++| ++++.+ +++||++++|+ +|+++++|+|+||++. ..|.|.+||++|+..
T Consensus 77 ~i~~G~~~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l~~~~~p~~~~~~e~~~~~~G~~~------------------ 138 (265)
T cd07572 77 WLVGGSIPERDDDDGKVYNTSLVFDPDGELVARYRKIHLFDVDVPGGISYRESDTLTPGDEV------------------ 138 (265)
T ss_pred EEEEeeeccccCCCCcEEEEEEEECCCCeEEeEEeeEEeecccCCCCcccccccccCCCCcc------------------
Confidence 99999 456655 78999999998 7999999999999532 236788999998753
Q ss_pred ceecccceeEEeCCceEEEEeeccCCCCChHHHHHHhCCCeEEEEcCCCCccccchHHHHHHHHHHHHHcCcEEEEEcCc
Q 009550 153 KSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQ 232 (532)
Q Consensus 153 ~~~p~g~~vf~~~~~riGv~IC~D~~~pe~~~~~la~~GadlIl~psas~~~~g~~~~~~~l~~~rA~e~~~~vv~aN~~ 232 (532)
.+|+++++|+|++||+|.|||+ ..+.++++|||+|++|++++...+. .+|..+.+.||.|++++++++|++
T Consensus 139 -------~~~~~~~~~ig~~IC~D~~~pe-~~r~~~~~gadli~~p~~~~~~~~~-~~~~~~~~~rA~e~~~~vv~~n~~ 209 (265)
T cd07572 139 -------VVVDTPFGKIGLGICYDLRFPE-LARALARQGADILTVPAAFTMTTGP-AHWELLLRARAIENQCYVVAAAQA 209 (265)
T ss_pred -------eEEecCCceEEEEEEeccCcHH-HHHHHHHCCCCEEEECCCCCCCcch-HHHHHHHHHHHHhcCCEEEEEccc
Confidence 2899999999999999999996 6889999999999999998766554 345677899999999999999999
Q ss_pred CCCCCceeeeccEEEE-eCCeEEEeeCCCCCCceeEEEEEeechhhhhhhccCCchh
Q 009550 233 GCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQ 288 (532)
Q Consensus 233 G~~~~~~~f~G~S~I~-p~G~ila~~~~f~e~~~~iv~a~iDl~~~~~~R~~~~~~~ 288 (532)
|.+.+...|.|.|+|+ |+|+++++++.+ +++++++||++.+++.|.+.+.++
T Consensus 210 G~~~~~~~~~G~S~i~~p~G~il~~~~~~----~~~~~~~id~~~~~~~r~~~~~~~ 262 (265)
T cd07572 210 GDHEAGRETYGHSMIVDPWGEVLAEAGEG----EGVVVAEIDLDRLEEVRRQIPVLK 262 (265)
T ss_pred ccCCCCCeecceeEEECCCcHHHhhcCCC----CcEEEEEeCHHHHHHHHHhCcchh
Confidence 9885667899999999 999999998865 269999999999998888765543
No 19
>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=2.1e-42 Score=346.28 Aligned_cols=244 Identities=24% Similarity=0.202 Sum_probs=203.2
Q ss_pred EEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhh-----hHHHHHHHHHHhcccCC
Q 009550 5 KVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTV-----THAWECLKDLLLGDWTD 79 (532)
Q Consensus 5 rVAlvQ~~~~~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~~~~~-----~~~~~~l~~la~~~~~~ 79 (532)
|||++|+++..+|++.|++++.+++++|+++|+|||||||++++||.+.+......+. ....+.+.++++ ++
T Consensus 1 ria~~Q~~~~~~~~~~n~~~~~~~i~~a~~~g~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~---~~ 77 (268)
T cd07580 1 RVACVQFDPRVGDLDANLARSIELIREAADAGANLVVLPELANTGYVFESRDEAFALAEEVPDGASTRAWAELAA---EL 77 (268)
T ss_pred CEEEEEccCccCcHHHHHHHHHHHHHHHHHcCCCEEEcCCcccccCCCCCHHHHHHhhccCCCCchHHHHHHHHH---Hc
Confidence 6999999999999999999999999999999999999999999999876532111111 112334555544 68
Q ss_pred CeEEEEceeeeeCCeeeEEEEEEeCCEEEEEEecccCCCCCCcccccceeecCCCCcccccccchhhhhhccCceecccc
Q 009550 80 GILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGY 159 (532)
Q Consensus 80 ~i~iivG~~~~~~~~lyNsa~vi~~G~il~~y~K~~L~~~g~f~E~~~f~~G~~~~~~~~~~lp~~~~~~~~~~~~p~g~ 159 (532)
++++++|++++.++++||++++|+++++++.|+|+||++ .|.+||++|+...
T Consensus 78 ~~~i~~G~~~~~~~~~yNs~~vi~~~g~~~~y~K~~l~~----~e~~~f~~G~~~~------------------------ 129 (268)
T cd07580 78 GLYIVAGFAERDGDRLYNSAVLVGPDGVIGTYRKAHLWN----EEKLLFEPGDLGL------------------------ 129 (268)
T ss_pred CcEEEeecccccCCceEEEEEEECCCCcEEEEEEecCCc----hhcceecCCCCCC------------------------
Confidence 999999999887889999999999655789999999985 4889999998621
Q ss_pred eeEEeCCceEEEEeeccCCCCChHHHHHHhCCCeEEEEcCCCCccccch----HHHHHHHHHHHHHcCcEEEEEcCcCCC
Q 009550 160 GFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKL----DYRIRAFISATHSRGGVYMYSNHQGCD 235 (532)
Q Consensus 160 ~vf~~~~~riGv~IC~D~~~pe~~~~~la~~GadlIl~psas~~~~g~~----~~~~~l~~~rA~e~~~~vv~aN~~G~~ 235 (532)
.+|+++++|+|++||+|+|||+ +.+.++.+|||+|++|++|++..++. ..+..+.++||.||++++++||++|.+
T Consensus 130 ~v~~~~~~~ig~~IC~D~~fpe-~~r~~~~~ga~li~~ps~~~~~~~~~~~~~~~~~~~~~arA~en~~~vv~~n~~G~~ 208 (268)
T cd07580 130 PVFDTPFGRIGVAICYDGWFPE-TFRLLALQGADIVCVPTNWVPMPRPPEGGPPMANILAMAAAHSNGLFIACADRVGTE 208 (268)
T ss_pred ceEEcCCCcEEEEEECcccchH-HHHHHHHcCCCEEEEcCcccccCCcccccCcHHHHhhHHHHhhCCcEEEEEeeeeec
Confidence 2889999999999999999997 56789999999999999998765431 234456788999999999999999988
Q ss_pred CCceeeeccEEEE-eCCeEEEeeCCCCCCceeEEEEEeechhhhhhhcc
Q 009550 236 GGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGS 283 (532)
Q Consensus 236 ~~~~~f~G~S~I~-p~G~ila~~~~f~e~~~~iv~a~iDl~~~~~~R~~ 283 (532)
++..|.|+|+|+ |+|+++++++.+.+ +++++++||++.++..|..
T Consensus 209 -~~~~~~G~S~ii~p~G~~~~~~~~~~~--~~~~~~~id~~~~~~~r~~ 254 (268)
T cd07580 209 -RGQPFIGQSLIVGPDGWPLAGPASGDE--EEILLADIDLTAARRKRIW 254 (268)
T ss_pred -cCceEeeeeEEECCCCCeeeecCCCCC--CeEEEEEecHHHHHHhhcC
Confidence 567899999999 99999999876533 4799999999999998875
No 20
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=8e-42 Score=339.39 Aligned_cols=247 Identities=21% Similarity=0.162 Sum_probs=206.8
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccc---cchhhhHHHHHHHHHHhcccCCCeE
Q 009550 6 VATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFL---ELDTVTHAWECLKDLLLGDWTDGIL 82 (532)
Q Consensus 6 VAlvQ~~~~~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~---~~~~~~~~~~~l~~la~~~~~~~i~ 82 (532)
||++|+++. +|+++|++++.+++++|+++|+|||||||++++||...+... ...+.....+.+.++ +++++++
T Consensus 1 ia~~Q~~~~-~d~~~n~~~~~~~i~~a~~~g~dlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~l~~~---a~~~~i~ 76 (255)
T cd07581 1 VALAQFASS-GDKEENLEKVRRLLAEAAAAGADLVVFPEYTMARFGDGLDDYARVAEPLDGPFVSALARL---ARELGIT 76 (255)
T ss_pred CEEEEeeCC-CCHHHHHHHHHHHHHHHHHcCCCEEECcchhcCCCCcchhhHHhhhccCCCHHHHHHHHH---HHHcCeE
Confidence 689999986 999999999999999999999999999999999998765321 111122233344444 4468999
Q ss_pred EEEceeeeeC-CeeeEEEEEEe-CCEEEEEEecccCCCCCCcccccceeecCCCCcccccccchhhhhhccCceecccce
Q 009550 83 CSFGMPVIKG-SERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYG 160 (532)
Q Consensus 83 iivG~~~~~~-~~lyNsa~vi~-~G~il~~y~K~~L~~~g~f~E~~~f~~G~~~~~~~~~~lp~~~~~~~~~~~~p~g~~ 160 (532)
+++|++++.+ +++||++++|+ +|+++++|+|.||+++..|.|..||++|+... + .
T Consensus 77 iv~G~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~L~~~~~~~e~~~~~~G~~~~--------------------~---~ 133 (255)
T cd07581 77 VVAGMFEPAGDGRVYNTLVVVGPDGEIIAVYRKIHLYDAFGFRESDTVAPGDELP--------------------P---V 133 (255)
T ss_pred EEEEeeeeCCCCcEEEeEEEECCCCcEEEEEeeeccCCCCCcCcccccCCCCCCC--------------------c---e
Confidence 9999998865 48999999996 89999999999998876788999999998621 0 2
Q ss_pred eEEeCCceEEEEeeccCCCCChHHHHHHhCCCeEEEEcCCCCccccchHHHHHHHHHHHHHcCcEEEEEcCcCCCCCcee
Q 009550 161 FIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLY 240 (532)
Q Consensus 161 vf~~~~~riGv~IC~D~~~pe~~~~~la~~GadlIl~psas~~~~g~~~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~ 240 (532)
+|+++++|+|++||+|.|||+ ..+.++++|||+|++|++|+...+..++|..+.+.||.|++++++.+|++|. .
T Consensus 134 ~~~~~~~kig~~IC~D~~~pe-~~~~~~~~ga~lil~ps~~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~g~-----~ 207 (255)
T cd07581 134 VFVVGGVKVGLATCYDLRFPE-LARALALAGADVIVVPAAWVAGPGKEEHWETLLRARALENTVYVAAAGQAGP-----R 207 (255)
T ss_pred EEecCCceEEEEEEecccCHH-HHHHHHHCCCcEEEECCcccCCCCchHHHHHHHHHHHHHhCCEEEEEcCcCC-----C
Confidence 678888999999999999996 6789999999999999998765555567778899999999999999999986 5
Q ss_pred eeccEEEE-eCCeEEEeeCCCCCCceeEEEEEeechhhhhhhccCCchhh
Q 009550 241 FDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQE 289 (532)
Q Consensus 241 f~G~S~I~-p~G~ila~~~~f~e~~~~iv~a~iDl~~~~~~R~~~~~~~~ 289 (532)
|.|.|+|+ |+|+++++.+.. ++++++++|++++++.|.+.+.+.+
T Consensus 208 ~~G~S~i~~p~G~i~~~~~~~----~~~l~~~id~~~~~~~r~~~~~~~~ 253 (255)
T cd07581 208 GIGRSMVVDPLGVVLADLGER----EGLLVADIDPERVEEAREALPVLEN 253 (255)
T ss_pred cccceEEECCCcceeeecCCC----CcEEEEEeCHHHHHHHHHhCcchhc
Confidence 78999999 999999998753 3799999999999999988776543
No 21
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases). Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that
Probab=100.00 E-value=1e-41 Score=346.08 Aligned_cols=255 Identities=18% Similarity=0.149 Sum_probs=208.1
Q ss_pred eEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccc-----chhh---hHH----HHHHHH
Q 009550 4 LKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLE-----LDTV---THA----WECLKD 71 (532)
Q Consensus 4 ~rVAlvQ~~~~~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~-----~~~~---~~~----~~~l~~ 71 (532)
||||++|+++..+|++.|++++.+++++|+++|+|||||||+++|||...+++.. +.+. +.+ .+.++.
T Consensus 1 ~kia~~Q~~~~~~d~~~nl~~~~~~i~~A~~~ga~lvvfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (297)
T cd07564 1 VKVAAVQAAPVFLDLAATVEKACRLIEEAAANGAQLVVFPEAFIPGYPYWIWFGAPAEGRELFARYYENSVEVDGPELER 80 (297)
T ss_pred CEEEEEecCcccCCHHHHHHHHHHHHHHHHHCCCCEEEeccccccCCCchhhcCCcccchHHHHHHHHhCcCCCCHHHHH
Confidence 6899999999889999999999999999999999999999999999987554321 1111 111 124566
Q ss_pred HHhcccCCCeEEEEceeeeeCCeeeEEEEEEe-CCEEEEEEecccCCCCCCcccccceeecCCCCcccccccchhhhhhc
Q 009550 72 LLLGDWTDGILCSFGMPVIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVAL 150 (532)
Q Consensus 72 la~~~~~~~i~iivG~~~~~~~~lyNsa~vi~-~G~il~~y~K~~L~~~g~f~E~~~f~~G~~~~~~~~~~lp~~~~~~~ 150 (532)
|++.++++++++++|++++.++++||++++|+ +|+++++|+|+|++ +.|+.||.+|+...
T Consensus 81 l~~~a~~~~i~iv~G~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~l~----~~E~~~~~~g~~~~--------------- 141 (297)
T cd07564 81 LAEAARENGIYVVLGVSERDGGTLYNTQLLIDPDGELLGKHRKLKPT----HAERLVWGQGDGSG--------------- 141 (297)
T ss_pred HHHHHHHcCcEEEEeeEeccCCceEEEEEEEcCCCCEeeeeeccCCC----chhhhhcccCCCCC---------------
Confidence 66666679999999998887789999999998 79999999999975 36888999987421
Q ss_pred cCceecccceeEEeCCceEEEEeeccCCCCChHHHHHHhCCCeEEEEcCCCCccc-cchHHHHHHHHHHHHHcCcEEEEE
Q 009550 151 KQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQL-RKLDYRIRAFISATHSRGGVYMYS 229 (532)
Q Consensus 151 ~~~~~p~g~~vf~~~~~riGv~IC~D~~~pe~~~~~la~~GadlIl~psas~~~~-g~~~~~~~l~~~rA~e~~~~vv~a 229 (532)
. .+|+++++|||++||||+|||+ ..+.++++|||+|++++++.+.. ....+|..+.++||.||++|+++|
T Consensus 142 ----~----~v~~~~~~kig~~ICyD~~fPe-~~r~~a~~ga~ii~~~~~~~~~~~~~~~~~~~~~~arAien~~~vv~~ 212 (297)
T cd07564 142 ----L----RVVDTPIGRLGALICWENYMPL-ARYALYAQGEQIHVAPWPDFSPYYLSREAWLAASRHYALEGRCFVLSA 212 (297)
T ss_pred ----c----eEEecCCceEEEEEEhhcCCHH-HHHHHHHCCCeEEEECCCCcccccccHHHHHHHHHHHHHhcCCEEEEc
Confidence 0 2899999999999999999996 77899999999999987643321 123466678899999999999999
Q ss_pred cCcCCCC--------------CceeeeccEEEE-eCCeEEEeeCCCCCCceeEEEEEeechhhhhhhccCCchhh
Q 009550 230 NHQGCDG--------------GRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQE 289 (532)
Q Consensus 230 N~~G~~~--------------~~~~f~G~S~I~-p~G~ila~~~~f~e~~~~iv~a~iDl~~~~~~R~~~~~~~~ 289 (532)
|++|.+. +...|.|.|+|+ |+|+++++++.++ ++++++++|++.++..|...+.+++
T Consensus 213 N~vG~~~~~~~~~~~~~~~~~~~~~~~G~S~iv~P~G~il~~~~~~~---e~~l~a~id~~~~~~~r~~~~~~~~ 284 (297)
T cd07564 213 CQVVTEEDIPADCEDDEEADPLEVLGGGGSAIVGPDGEVLAGPLPDE---EGILYADIDLDDIVEAKLDFDPVGH 284 (297)
T ss_pred ccccChhHcccccccccccccccccCCCceEEECCCCCeecCCCCCC---ceEEEEEecHHHHHHHHhcCCCCCC
Confidence 9999531 235689999999 9999999987654 4799999999999999987776654
No 22
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases). Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic
Probab=100.00 E-value=1.8e-41 Score=342.84 Aligned_cols=246 Identities=17% Similarity=0.122 Sum_probs=198.6
Q ss_pred eEEEEEeccC----CCCCHHHHHHHHHHHHHHHHH--CCCeEEEcCCCCcCCCCCCcccccchhhhH-HHHHHHHHHhcc
Q 009550 4 LKVATCNLNN----WALDFDCNLKNIKESIGRAKE--AGAVIRLGPELEITGYGCEDHFLELDTVTH-AWECLKDLLLGD 76 (532)
Q Consensus 4 ~rVAlvQ~~~----~~~d~~~N~~~i~~~i~~A~~--~gadLvVfPEl~ltGy~~~d~~~~~~~~~~-~~~~l~~la~~~ 76 (532)
++||++|+++ ..+|++.|++++.+++++|++ +|+|||||||++++||..... ...++... ..+.++.|++.+
T Consensus 1 ~~Ia~~Q~~~~~~~~~~d~~~Nl~~~~~~i~~A~~~~~gadLvvfPE~~ltGy~~~~~-~~~~~a~~~~~~~~~~l~~lA 79 (291)
T cd07565 1 VGVAVVQYKVPVLHTKEEVLENAERIADMVEGTKRGLPGMDLIVFPEYSTQGLMYDKW-TMDETACTVPGPETDIFAEAC 79 (291)
T ss_pred CeEEEEecccccccccccHHHHHHHHHHHHHHHHhhCCCCeEEEeCCcccccCCCCcc-hhhhhccCCCChhHHHHHHHH
Confidence 4799999998 578999999999999999986 599999999999999975321 11111111 012344555555
Q ss_pred cCCCeEEEEceeeeeC---CeeeEEEEEEe-CCEEEEEEecccCCCCCCcccccceeecCCCCcccccccchhhhhhccC
Q 009550 77 WTDGILCSFGMPVIKG---SERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQ 152 (532)
Q Consensus 77 ~~~~i~iivG~~~~~~---~~lyNsa~vi~-~G~il~~y~K~~L~~~g~f~E~~~f~~G~~~~~~~~~~lp~~~~~~~~~ 152 (532)
+++++++++|++++.+ +++||++++|+ +|+++++|+|+|++. +..+|.||+...
T Consensus 80 ~~~~i~i~~g~~e~~~~~~~~~yNsa~~i~~~G~i~~~YrK~hl~~-----~~e~~~~G~~~~----------------- 137 (291)
T cd07565 80 KEAKVWGVFSIMERNPDHGKNPYNTAIIIDDQGEIVLKYRKLHPWV-----PIEPWYPGDLGT----------------- 137 (291)
T ss_pred HHCCeEEEEEeeeecCCCCCceEEEEEEECCCCcEEEEEEecccCC-----CcccccCCCCCc-----------------
Confidence 5789999999887753 68999999998 799999999999852 233578887521
Q ss_pred ceecccceeEEeC-CceEEEEeeccCCCCChHHHHHHhCCCeEEEEcCCCCccccchHHHHHHHHHHHHHcCcEEEEEcC
Q 009550 153 KSVPFGYGFIQFL-DTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNH 231 (532)
Q Consensus 153 ~~~p~g~~vf~~~-~~riGv~IC~D~~~pe~~~~~la~~GadlIl~psas~~~~g~~~~~~~l~~~rA~e~~~~vv~aN~ 231 (532)
.+|++. |+|||++||||+|||| ..|.++++|||+|++|++|+... ..+|..+.++||.||++++++||+
T Consensus 138 -------~v~~~~~g~riG~~ICyD~~fPe-~~r~la~~GAdill~ps~~~~~~--~~~w~~~~~aRA~En~~~vv~aN~ 207 (291)
T cd07565 138 -------PVCEGPKGSKIALIICHDGMYPE-IARECAYKGAELIIRIQGYMYPA--KDQWIITNKANAWCNLMYTASVNL 207 (291)
T ss_pred -------eeeECCCCCEEEEEEEcCCCCcH-HHHHHHHCCCeEEEECCcCCCCc--chHHHHHHHHHHHhcCcEEEEecc
Confidence 277774 7799999999999996 78899999999999999987643 246677889999999999999999
Q ss_pred cCCCCCceeeeccEEEE-eCCeEEEeeCCCCCCceeEEEEEeechhhhhhhccCCc
Q 009550 232 QGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISS 286 (532)
Q Consensus 232 ~G~~~~~~~f~G~S~I~-p~G~ila~~~~f~e~~~~iv~a~iDl~~~~~~R~~~~~ 286 (532)
+|.+ ++..|.|+|+|+ |+|+++++++.++ +++++++||++.++..|.+.+.
T Consensus 208 ~G~~-~~~~~~G~S~ivdP~G~ila~~~~~~---e~i~~adid~~~~~~~R~~~~~ 259 (291)
T cd07565 208 AGFD-GVFSYFGESMIVNFDGRTLGEGGREP---DEIVTAELSPSLVRDARKNWGS 259 (291)
T ss_pred cccC-CCceeeeeeEEECCCCCEEEeCCCCC---CcEEEEEEcHHHHHHHHhcCCC
Confidence 9987 567899999999 9999999988764 3699999999999988876554
No 23
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=2e-41 Score=337.24 Aligned_cols=246 Identities=24% Similarity=0.238 Sum_probs=206.9
Q ss_pred EEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccc-----chhhhHHHHHHHHHHhcccCC
Q 009550 5 KVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLE-----LDTVTHAWECLKDLLLGDWTD 79 (532)
Q Consensus 5 rVAlvQ~~~~~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~-----~~~~~~~~~~l~~la~~~~~~ 79 (532)
|||++|+++..+|++.|++++++++++|+++|+|||||||+++|||.+.+.... ........+.+.++++ ++
T Consensus 1 ria~~q~~~~~~d~~~n~~~~~~~i~~a~~~ga~liv~PE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~---~~ 77 (258)
T cd07584 1 KVALIQMDSVLGDVKANLKKAAELCKEAAAEGADLICFPELATTGYRPDLLGPKLWELSEPIDGPTVRLFSELAK---EL 77 (258)
T ss_pred CEEEEEecCccCCHHHHHHHHHHHHHHHHHcCCCEEEcccccccCCCccccchhhHhhccCCCCcHHHHHHHHHH---Hc
Confidence 699999999999999999999999999999999999999999999987543211 1111223344555554 68
Q ss_pred CeEEEEceeeeeC--CeeeEEEEEEe-CCEEEEEEecccCCCCCCcccccceeecCCCCcccccccchhhhhhccCceec
Q 009550 80 GILCSFGMPVIKG--SERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVP 156 (532)
Q Consensus 80 ~i~iivG~~~~~~--~~lyNsa~vi~-~G~il~~y~K~~L~~~g~f~E~~~f~~G~~~~~~~~~~lp~~~~~~~~~~~~p 156 (532)
++++++|++++.+ +++||++++|+ +|++++.|+|+||++ .|.+||++|+..
T Consensus 78 ~i~i~~G~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~----~e~~~~~~G~~~---------------------- 131 (258)
T cd07584 78 GVYIVCGFVEKGGVPGKVYNSAVVIDPEGESLGVYRKIHLWG----LEKQYFREGEQY---------------------- 131 (258)
T ss_pred CeEEEEeehcccCCCCceEEEEEEECCCCCEEeEEEeecCCc----hhhhhccCCCCC----------------------
Confidence 9999999988643 68999999998 899999999999974 488899999753
Q ss_pred ccceeEEeCCceEEEEeeccCCCCChHHHHHHhCCCeEEEEcCCCCccccchHHHHHHHHHHHHHcCcEEEEEcCcCCCC
Q 009550 157 FGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDG 236 (532)
Q Consensus 157 ~g~~vf~~~~~riGv~IC~D~~~pe~~~~~la~~GadlIl~psas~~~~g~~~~~~~l~~~rA~e~~~~vv~aN~~G~~~ 236 (532)
.+|+++++|+|++||+|+|||+ ..|.++++|||+|++|++|+.. ....|....+.||.|++++++++|++|.+
T Consensus 132 ---~~~~~~~~~~g~~IC~D~~fpe-~~r~~~~~gadll~~ps~~~~~--~~~~~~~~~~~rA~En~~~vv~~n~~g~~- 204 (258)
T cd07584 132 ---PVFDTPFGKIGVMICYDMGFPE-VARILTLKGAEVIFCPSAWREQ--DADIWDINLPARALENTVFVAAVNRVGNE- 204 (258)
T ss_pred ---eeEEcCCceEEEEEEcCccChH-HHHHHHHCCCcEEEECCccCCC--CchHHHHHHHHHHHhCCcEEEEECccccC-
Confidence 2889999999999999999996 6889999999999999997643 23345567889999999999999999988
Q ss_pred CceeeeccEEEE-eCCeEEEeeCCCCCCceeEEEEEeechhhhhhhccCCchhh
Q 009550 237 GRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQE 289 (532)
Q Consensus 237 ~~~~f~G~S~I~-p~G~ila~~~~f~e~~~~iv~a~iDl~~~~~~R~~~~~~~~ 289 (532)
++..|.|.|+|+ |+|+++++++.++ ++++++++|++.++..|.+.+.+.+
T Consensus 205 ~~~~~~G~S~ii~p~G~il~~~~~~~---~~~~~~~id~~~~~~~r~~~p~~~~ 255 (258)
T cd07584 205 GDLVLFGKSKILNPRGQVLAEASEEA---EEILYAEIDLDAIADYRMTLPYLKD 255 (258)
T ss_pred CCceecceeEEECCCCceeeecCCCC---CcEEEEEeCHHHHHHHHhhCchhhh
Confidence 667899999999 9999999998775 3799999999999999988766543
No 24
>PLN02504 nitrilase
Probab=100.00 E-value=1.8e-41 Score=349.75 Aligned_cols=253 Identities=15% Similarity=0.128 Sum_probs=205.8
Q ss_pred CCceEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccc----------cchh---hhHH--
Q 009550 1 MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFL----------ELDT---VTHA-- 65 (532)
Q Consensus 1 m~~~rVAlvQ~~~~~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~----------~~~~---~~~~-- 65 (532)
|+.||||++|+++..+|.+.|++++.+++++|+++|+|||||||+++|||+....+. ...+ ...+
T Consensus 22 ~~~~kiAlvQ~~~~~~d~~~nl~~~~~li~eAa~~gadLIVfPE~~ltGyp~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 101 (346)
T PLN02504 22 SSTVRATVVQASTVFYDTPATLDKAERLIAEAAAYGSQLVVFPEAFIGGYPRGSTFGLAIGDRSPKGREDFRKYHASAID 101 (346)
T ss_pred CCceEEEEEEcCcccCCHHHHHHHHHHHHHHHHHCCCeEEEeCccccccCCcchhhccccccccchhHHHHHHHHHhccc
Confidence 457999999999989999999999999999999999999999999999997633221 0011 1111
Q ss_pred --HHHHHHHHhcccCCCeEEEEceeeeeCCeeeEEEEEEe-CCEEEEEEecccCCCCCCcccccceeecCCCCccccccc
Q 009550 66 --WECLKDLLLGDWTDGILCSFGMPVIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQL 142 (532)
Q Consensus 66 --~~~l~~la~~~~~~~i~iivG~~~~~~~~lyNsa~vi~-~G~il~~y~K~~L~~~g~f~E~~~f~~G~~~~~~~~~~l 142 (532)
.+.++.|++.+++++++|++|++++.++++||++++|+ +|+++++|+|+|+.. .|+++|.+|+...
T Consensus 102 ~~g~~i~~l~~~A~~~~i~iv~G~~e~~~~~~yNsa~~i~~~G~i~~~yrK~~p~~----~E~~~f~~G~g~~------- 170 (346)
T PLN02504 102 VPGPEVDRLAAMAGKYKVYLVMGVIERDGYTLYCTVLFFDPQGQYLGKHRKLMPTA----LERLIWGFGDGST------- 170 (346)
T ss_pred CCCHHHHHHHHHHHHcCCEEEEeeeecCCCceEEEEEEECCCCCEEeEEeeccCCc----ccceeeecCCCCC-------
Confidence 12466666666679999999999888889999999998 799999999998742 5888999987421
Q ss_pred chhhhhhccCceecccceeEEeCCceEEEEeeccCCCCChHHHHHHhCCCeEEEEcCCCCccccchHHHHHHHHHHHHHc
Q 009550 143 PNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSR 222 (532)
Q Consensus 143 p~~~~~~~~~~~~p~g~~vf~~~~~riGv~IC~D~~~pe~~~~~la~~GadlIl~psas~~~~g~~~~~~~l~~~rA~e~ 222 (532)
. .+|+++++|||++||||.|||+ ..|.++++|||||++|++++. ..|..++++||.||
T Consensus 171 ------------~----~vf~~~~griG~lICyD~~fPe-~~r~la~~Gadii~~p~~~~~-----~~w~~~~rarA~En 228 (346)
T PLN02504 171 ------------I----PVYDTPIGKIGAVICWENRMPL-LRTAMYAKGIEIYCAPTADSR-----ETWQASMRHIALEG 228 (346)
T ss_pred ------------C----ceEEcCCceEEEEEeccchhHH-HHHHHHHCCCeEEEECCCCCc-----hhHHHHHHHHHHcc
Confidence 0 3899999999999999999996 678999999999999998742 35667789999999
Q ss_pred CcEEEEEcCcCC---------------CC----CceeeeccEEEE-eCCeEEEeeCCCCCCceeEEEEEeechhhhhhhc
Q 009550 223 GGVYMYSNHQGC---------------DG----GRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRG 282 (532)
Q Consensus 223 ~~~vv~aN~~G~---------------~~----~~~~f~G~S~I~-p~G~ila~~~~f~e~~~~iv~a~iDl~~~~~~R~ 282 (532)
+++++.||++|. +. +...|.|+|+|+ |+|+++++....+ +++++++||++.+++.|.
T Consensus 229 ~~~Vv~aN~vg~~~~~~~~~~~~~~G~~~~~~~~~~~~~G~S~IvdP~G~vla~~~~~~---e~il~adiDl~~i~~~R~ 305 (346)
T PLN02504 229 GCFVLSANQFCRRKDYPPPPEYLFSGTEEDLTPDSIVCAGGSVIISPSGTVLAGPNYEG---EGLITADLDLGEIARAKF 305 (346)
T ss_pred CcEEEEecccccccccCcccccccccccccccccccccCcceEEECCCCCEecCCCCCC---CcEEEEEEcHHHHHHHHh
Confidence 999999999962 11 236789999999 9999998875332 479999999999998888
Q ss_pred cCCchhh
Q 009550 283 SISSFQE 289 (532)
Q Consensus 283 ~~~~~~~ 289 (532)
..+.+..
T Consensus 306 ~~~~~~~ 312 (346)
T PLN02504 306 DFDVVGH 312 (346)
T ss_pred hCCcccc
Confidence 7665543
No 25
>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=1.1e-41 Score=339.13 Aligned_cols=246 Identities=20% Similarity=0.179 Sum_probs=198.7
Q ss_pred eEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhhHH-HHHHHHHHhcccCCCeE
Q 009550 4 LKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHA-WECLKDLLLGDWTDGIL 82 (532)
Q Consensus 4 ~rVAlvQ~~~~~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~~~~~~~~-~~~l~~la~~~~~~~i~ 82 (532)
+|||++|+++..+|++.|++++.+++++|+++|+|||||||+++|||++.+......+.+.. .+.++.+++.+++++++
T Consensus 1 ~ria~~Q~~~~~~d~~~n~~~~~~~i~~A~~~gadlivfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~ 80 (258)
T cd07578 1 YKAAAIQFEPEMGEKERNIERLLALCEEAARAGARLIVTPEMATTGYCWYDRAEIAPFVEPIPGPTTARFAELAREHDCY 80 (258)
T ss_pred CeEEEEEecCccccHHHHHHHHHHHHHHHHhCCCCEEEcccccccCCCcCCHHHhhhhcccCCCHHHHHHHHHHHHcCcE
Confidence 58999999999999999999999999999999999999999999999876543222222211 12344444445568999
Q ss_pred EEEceeeee--CCeeeEEEEEEeCCEEEEEEecccCCCCCCcccccceeecCCCCcccccccchhhhhhccCceecccce
Q 009550 83 CSFGMPVIK--GSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYG 160 (532)
Q Consensus 83 iivG~~~~~--~~~lyNsa~vi~~G~il~~y~K~~L~~~g~f~E~~~f~~G~~~~~~~~~~lp~~~~~~~~~~~~p~g~~ 160 (532)
+++|++++. ++++||++++|+++++++.|+|+|+. +.|.+||+||+... .
T Consensus 81 ii~G~~~~~~~~~~~yNs~~vi~~~g~~~~y~K~h~~----~~e~~~~~~g~~~~------------------------~ 132 (258)
T cd07578 81 IVVGLPEVDSRSGIYYNSAVLIGPSGVIGRHRKTHPY----ISEPKWAADGDLGH------------------------Q 132 (258)
T ss_pred EEEecceecCCCCCeeEEEEEECCCCcEEeEeeecCC----cccccccCCCCCCc------------------------e
Confidence 999999874 46899999999965589999999975 35888999987421 3
Q ss_pred eEEeCCceEEEEeeccCCCCChHHHHHHhCCCeEEEEcCCCCccccchHHHHHHHHHHHHHcCcEEEEEcCcCCCCCcee
Q 009550 161 FIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLY 240 (532)
Q Consensus 161 vf~~~~~riGv~IC~D~~~pe~~~~~la~~GadlIl~psas~~~~g~~~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~ 240 (532)
+|+++++|+|++||+|+|||+ ..|.++++|||+|++|++|+....+. ..+..||.||+++++++|++|.+ ++..
T Consensus 133 v~~~~~~rig~~IC~D~~fpe-~~r~~~~~ga~ll~~ps~~~~~~~~~----~~~~~rA~en~~~vv~an~~G~~-~~~~ 206 (258)
T cd07578 133 VFDTEIGRIALLICMDIHFFE-TARLLALGGADVICHISNWLAERTPA----PYWINRAFENGCYLIESNRWGLE-RGVQ 206 (258)
T ss_pred EEECCCccEEEEEeeCCCchH-HHHHHHHcCCCEEEEcCCCCCCCCcc----hHHHHhhhcCCeEEEEecceecc-CCcc
Confidence 899999999999999999996 67899999999999999976433222 12358999999999999999988 5678
Q ss_pred eeccEEEE-eCCeEEEeeCCCCCCceeEEEEEeechhhhhhhcc-CCch
Q 009550 241 FDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGS-ISSF 287 (532)
Q Consensus 241 f~G~S~I~-p~G~ila~~~~f~e~~~~iv~a~iDl~~~~~~R~~-~~~~ 287 (532)
|.|+|+|+ |+|+++++.+.. +++++++||++.++..|.. .+.+
T Consensus 207 ~~G~S~ii~p~G~il~~~~~~----e~~~~a~id~~~~~~~r~~~~~~~ 251 (258)
T cd07578 207 FSGGSCIIEPDGTIQASIDSG----DGVALGEIDLDRARHRQFPGELVF 251 (258)
T ss_pred eeeEEEEECCCCcEeeccCCC----CceEEEEecchHhhhhhcccchhh
Confidence 99999999 999999987632 3799999999999888764 3443
No 26
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=1.9e-41 Score=337.94 Aligned_cols=242 Identities=23% Similarity=0.261 Sum_probs=204.1
Q ss_pred EEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccch--hhhHHHHHHHHHHhcccCCCeE
Q 009550 5 KVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELD--TVTHAWECLKDLLLGDWTDGIL 82 (532)
Q Consensus 5 rVAlvQ~~~~~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~~~--~~~~~~~~l~~la~~~~~~~i~ 82 (532)
|||++|+++..+|++.|++++.+++++|+++|+|||||||++++||.+.+....+. ......+.+.+++ ++++++
T Consensus 1 ~ia~~Q~~~~~~~~~~n~~~i~~~i~~a~~~gadliv~PE~~l~g~~~~~~~~~~~~~~~~~~~~~l~~~a---~~~~~~ 77 (261)
T cd07585 1 RIALVQFEARVGDKARNLAVIARWTRKAAAQGAELVCFPEMCITGYTHVRALSREAEVPDGPSTQALSDLA---RRYGLT 77 (261)
T ss_pred CEEEEEeecCCCCHHHHHHHHHHHHHHHHHcCCCEEEecccccccccCCcccchhcccCCChHHHHHHHHH---HHcCcE
Confidence 69999999988999999999999999999999999999999999999876543311 1122334455555 468999
Q ss_pred EEEceeeeeCCeeeEEEEEEeCCEEEEEEecccCCCCCCcccccceeecCCCCcccccccchhhhhhccCceecccceeE
Q 009550 83 CSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFI 162 (532)
Q Consensus 83 iivG~~~~~~~~lyNsa~vi~~G~il~~y~K~~L~~~g~f~E~~~f~~G~~~~~~~~~~lp~~~~~~~~~~~~p~g~~vf 162 (532)
+++|++++.++++||++++|++++.++.|+|.||++ .|.+||++|+.. .+|
T Consensus 78 i~~G~~~~~~~~~yNs~~vi~~~g~i~~y~K~~l~~----~E~~~~~~G~~~-------------------------~v~ 128 (261)
T cd07585 78 ILAGLIEKAGDRPYNTYLVCLPDGLVHRYRKLHLFR----REHPYIAAGDEY-------------------------PVF 128 (261)
T ss_pred EEEeccccCCCceeEEEEEECCCCcEeEEeeecCCc----cccceEcCCCCC-------------------------ceE
Confidence 999999887889999999999544479999999986 488899999754 289
Q ss_pred EeCCceEEEEeeccCCCCChHHHHHHhCCCeEEEEcCCCCcccc--chHHHHHHHHHHHHHcCcEEEEEcCcCCCCCcee
Q 009550 163 QFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLR--KLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLY 240 (532)
Q Consensus 163 ~~~~~riGv~IC~D~~~pe~~~~~la~~GadlIl~psas~~~~g--~~~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~ 240 (532)
+++++|+|++||+|+|||+ ..+.++++|||+|++|++++...+ ....|...++.||.|++++++++|++|.+ ++..
T Consensus 129 ~~~~~rig~~IC~D~~~pe-~~r~l~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~~n~~g~~-~~~~ 206 (261)
T cd07585 129 ATPGVRFGILICYDNHFPE-NVRATALLGAEILFAPHATPGTTSPKGREWWMRWLPARAYDNGVFVAACNGVGRD-GGEV 206 (261)
T ss_pred EcCCceEEEEEEcCCcCcH-HHHHHHHCCCCEEEECCccCCCCCcchHHHHHHHhHHHHhhcCeEEEEecccccC-CCce
Confidence 9999999999999999997 678999999999999999875432 22344567889999999999999999988 5788
Q ss_pred eeccEEEE-eCCeEEEeeCCCCCCceeEEEEEeechhhhhhhcc
Q 009550 241 FDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGS 283 (532)
Q Consensus 241 f~G~S~I~-p~G~ila~~~~f~e~~~~iv~a~iDl~~~~~~R~~ 283 (532)
|.|.|+|+ |+|+++++++.++ +++++++||++.++..|..
T Consensus 207 ~~G~S~i~~p~G~v~~~~~~~~---e~~l~~~id~~~~~~~r~~ 247 (261)
T cd07585 207 FPGGAMILDPYGRVLAETTSGG---DGMVVADLDLDLINTVRGR 247 (261)
T ss_pred ecceEEEECCCCCEEeccCCCC---CcEEEEEecHHHHHHhhcc
Confidence 99999999 9999999998875 3789999999999988864
No 27
>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=4e-41 Score=338.46 Aligned_cols=236 Identities=18% Similarity=0.137 Sum_probs=189.8
Q ss_pred EEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhhHHHHHHHHHHhcccCCCeEEE
Q 009550 5 KVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCS 84 (532)
Q Consensus 5 rVAlvQ~~~~~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~ii 84 (532)
|||++|+++.. |++.|++++.+++++|+++|+|||||||++++||....... ........+.+.++++ +++++++
T Consensus 1 ria~~Q~~~~~-d~~~Nl~~~~~~i~~A~~~gadlvvfPE~~ltG~~~~~~~~-~~~~~~~~~~l~~lA~---~~~i~iv 75 (279)
T cd07579 1 RIAVAQFAPTP-DIAGNLATIDRLAAEAKATGAELVVFPELALTGLDDPASEA-ESDTGPAVSALRRLAR---RLRLYLV 75 (279)
T ss_pred CEEEEeccCcc-CHHHHHHHHHHHHHHHHHCCCCEEEeCCccccCCCChHHhc-ccCCCHHHHHHHHHHH---HcCeEEE
Confidence 69999999875 99999999999999999999999999999999997643211 1111223344555554 6899999
Q ss_pred EceeeeeCCeeeEEEEEEeCCEEEEEEecccCCCCCCcccccceeecCCCCcccccccchhhhhhccCceecccceeEEe
Q 009550 85 FGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQF 164 (532)
Q Consensus 85 vG~~~~~~~~lyNsa~vi~~G~il~~y~K~~L~~~g~f~E~~~f~~G~~~~~~~~~~lp~~~~~~~~~~~~p~g~~vf~~ 164 (532)
+|++++.++++||++++|++++++++|+|+||++ .|+.||+||+.. .+|++
T Consensus 76 ~G~~~~~~~~~yNs~~vi~~~G~i~~Y~K~hL~~----~E~~~f~~G~~~-------------------------~v~~~ 126 (279)
T cd07579 76 AGFAEADGDGLYNSAVLVGPEGLVGTYRKTHLIE----PERSWATPGDTW-------------------------PVYDL 126 (279)
T ss_pred EeceEccCCcEEEEEEEEeCCeeEEEEecccCCC----cchhhccCCCCC-------------------------eeEEc
Confidence 9999888889999999999555889999999985 488899999753 28899
Q ss_pred CCceEEEEeeccCCCCChHHHHHHhCCCeEEEEcCCCCc-----------------cccchHHHHHHHHHHHHHcCcEEE
Q 009550 165 LDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHH-----------------QLRKLDYRIRAFISATHSRGGVYM 227 (532)
Q Consensus 165 ~~~riGv~IC~D~~~pe~~~~~la~~GadlIl~psas~~-----------------~~g~~~~~~~l~~~rA~e~~~~vv 227 (532)
+++|+|++||||+|||| +.|.++++|||+|++|++++. ..++..++|.++++||.||+++++
T Consensus 127 ~~~kiG~~ICyD~~fPe-~~r~~a~~Ga~ii~~psa~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~aRA~EN~~~vv 205 (279)
T cd07579 127 PLGRVGLLIGHDALFPE-AGRVLALRGCDLLACPAAIAIPFVGAHAGTSVPQPYPIPTGADPTHWHLARVRAGENNVYFA 205 (279)
T ss_pred CceeEEEEEeccccCcH-HHHHHHHCCCCEEEECCCcCCccccccccccccCCCCCcCccchhHHHHhHhHHhhCCeEEE
Confidence 99999999999999997 688999999999999998753 112112456689999999999999
Q ss_pred EEcCcCCCCCceeeeccEEEE-eCCeEEEeeC-CCCCCceeEEEEEeechhhhh
Q 009550 228 YSNHQGCDGGRLYFDGCSCVV-VNGDMIAQGS-QFSLKDVEIVVAQVDLDAVAG 279 (532)
Q Consensus 228 ~aN~~G~~~~~~~f~G~S~I~-p~G~ila~~~-~f~e~~~~iv~a~iDl~~~~~ 279 (532)
+||++|.. ..|.|.|+|+ |+|.++.... .... ++++++++||++.+++
T Consensus 206 ~aN~~g~~---~~~~G~S~ii~P~G~v~~~~~~~~~~-~e~~l~a~id~~~~~~ 255 (279)
T cd07579 206 FANVPDPA---RGYTGWSGVFGPDTFAFPRQEAAIGD-EEGIAWALIDTSNLDS 255 (279)
T ss_pred EeeccCCc---cccccccEEECCCeEEcchhhcccCC-CCcEEEEEecchhhcc
Confidence 99999875 2378999999 9999984310 1111 3479999999998865
No 28
>cd07575 Xc-1258_like Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup belonging to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup either represents a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. XC1258 is a homotetramer.
Probab=100.00 E-value=6.5e-41 Score=332.47 Aligned_cols=245 Identities=18% Similarity=0.206 Sum_probs=201.3
Q ss_pred eEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhhHHHHHHHHHHhcccCCCeEE
Q 009550 4 LKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILC 83 (532)
Q Consensus 4 ~rVAlvQ~~~~~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~i 83 (532)
||||++|+++.++|++.|++++.+++++|++ |+|||||||++++||.+.+......+.....+.+.++++ ++++.+
T Consensus 1 mkia~~Q~~~~~~d~~~N~~~~~~~i~~a~~-gadlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~l~~la~---~~~i~i 76 (252)
T cd07575 1 LKIALIQTDLVWEDPEANLAHFEEKIEQLKE-KTDLIVLPEMFTTGFSMNAEALAEPMNGPTLQWMKAQAK---KKGAAI 76 (252)
T ss_pred CEEEEEEeecCcCCHHHHHHHHHHHHHHhhc-CCCEEEeCCcCcCCCCccHHHhhcccCChHHHHHHHHHH---HCCeEE
Confidence 7999999999999999999999999999997 999999999999999875543222232333444555554 678988
Q ss_pred EEceeeeeCCeeeEEEEEEe-CCEEEEEEecccCCCCCCcccccceeecCCCCcccccccchhhhhhccCceecccceeE
Q 009550 84 SFGMPVIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFI 162 (532)
Q Consensus 84 ivG~~~~~~~~lyNsa~vi~-~G~il~~y~K~~L~~~g~f~E~~~f~~G~~~~~~~~~~lp~~~~~~~~~~~~p~g~~vf 162 (532)
++|++++.++++||++++++ +|++ ..|+|.||++++ .|..||++|+.. .+|
T Consensus 77 ~~~~~~~~~~~~yNs~~~i~~~G~i-~~y~K~~l~~~~--~e~~~~~~G~~~-------------------------~~~ 128 (252)
T cd07575 77 TGSLIIKEGGKYYNRLYFVTPDGEV-YHYDKRHLFRMA--GEHKVYTAGNER-------------------------VIV 128 (252)
T ss_pred EEEEEEccCCceEEEEEEECCCCCE-EEEeeeecCCCC--CccceecCCCCc-------------------------eEE
Confidence 88888877889999999998 5665 599999998653 688899999753 288
Q ss_pred EeCCceEEEEeeccCCCCChHHHHHHhCCCeEEEEcCCCCccccchHHHHHHHHHHHHHcCcEEEEEcCcCCCCCceeee
Q 009550 163 QFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFD 242 (532)
Q Consensus 163 ~~~~~riGv~IC~D~~~pe~~~~~la~~GadlIl~psas~~~~g~~~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~f~ 242 (532)
+++++|+|++||+|+|||+ ..+.++. ||+|++|++|+... ...|..+.++||.+|++++++||++|.++.+..|.
T Consensus 129 ~~~~~~ig~~IC~D~~~pe-~~r~~~~--a~lil~~s~~~~~~--~~~~~~~~~arA~en~~~vv~~n~~G~~~~~~~~~ 203 (252)
T cd07575 129 EYKGWKILLQVCYDLRFPV-WSRNTND--YDLLLYVANWPAPR--RAAWDTLLKARAIENQAYVIGVNRVGTDGNGLEYS 203 (252)
T ss_pred EECCEEEEEEEEeccCChH-HHHhhcC--CCEEEEeCCCCCCc--hHHHHHHhHHHHhhccceEEEecccccCCCCceEc
Confidence 9999999999999999997 5556543 99999999987532 23455677889999999999999999885478899
Q ss_pred ccEEEE-eCCeEEEeeCCCCCCceeEEEEEeechhhhhhhccCCchhh
Q 009550 243 GCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQE 289 (532)
Q Consensus 243 G~S~I~-p~G~ila~~~~f~e~~~~iv~a~iDl~~~~~~R~~~~~~~~ 289 (532)
|.|+|+ |+|+++++++.+ ++++++++|++.++..|...+.+++
T Consensus 204 G~S~i~~p~G~~l~~~~~~----e~~i~~~id~~~~~~~r~~~~~~~~ 247 (252)
T cd07575 204 GDSAVIDPLGEPLAEAEED----EGVLTATLDKEALQEFREKFPFLKD 247 (252)
T ss_pred ceeEEECCCCceeeEcCCC----ceEEEEEECHHHHHHHHhhCCcccc
Confidence 999999 999999998775 3699999999999988887665543
No 29
>PLN02798 nitrilase
Probab=100.00 E-value=1.6e-40 Score=335.69 Aligned_cols=253 Identities=17% Similarity=0.135 Sum_probs=204.6
Q ss_pred CceEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCC-CcCCCCCCcccccc-hhhhHHHHHHHHHHhcccCC
Q 009550 2 RLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPEL-EITGYGCEDHFLEL-DTVTHAWECLKDLLLGDWTD 79 (532)
Q Consensus 2 ~~~rVAlvQ~~~~~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl-~ltGy~~~d~~~~~-~~~~~~~~~l~~la~~~~~~ 79 (532)
+.||||++|+++ .+|++.|++++++++++|+++|+|||||||+ .++||.+.+.+... .+.....+.+.++++ ++
T Consensus 9 ~~~ria~~Q~~~-~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~A~---~~ 84 (286)
T PLN02798 9 SSVRVAVAQMTS-TNDLAANFATCSRLAKEAAAAGAKLLFLPECFSFIGDKDGESLAIAEPLDGPIMQRYRSLAR---ES 84 (286)
T ss_pred CccEEEEEEccC-CCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCccccCcCchhhhhhcccCCCHHHHHHHHHHH---Hc
Confidence 369999999986 5999999999999999999999999999998 46898765433211 122233445555555 68
Q ss_pred CeEEEEce-eee--eCCeeeEEEEEEe-CCEEEEEEecccCCC-----CCCcccccceeecCCCCcccccccchhhhhhc
Q 009550 80 GILCSFGM-PVI--KGSERYNCQVLCL-NRKIIMIRPKLWLAN-----DGNYRELRWFTAWKQKDQLEDFQLPNEISVAL 150 (532)
Q Consensus 80 ~i~iivG~-~~~--~~~~lyNsa~vi~-~G~il~~y~K~~L~~-----~g~f~E~~~f~~G~~~~~~~~~~lp~~~~~~~ 150 (532)
++++++|. +++ .++++||++++|+ +|+|+++|+|+||++ .+.+.|..||+||+..
T Consensus 85 ~i~iv~G~~~~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~p~~~~~~e~~~~~~G~~~---------------- 148 (286)
T PLN02798 85 GLWLSLGGFQEKGPDDSHLYNTHVLIDDSGEIRSSYRKIHLFDVDVPGGPVLKESSFTAPGKTI---------------- 148 (286)
T ss_pred CeEEEEeeeEcccCCCCceEEEEEEECCCCCEEEEEEEEEeccccCCCCCcccccccccCCCee----------------
Confidence 99999984 444 3578999999998 899999999999942 2335688899998753
Q ss_pred cCceecccceeEEeCCceEEEEeeccCCCCChHHHHHH-hCCCeEEEEcCCCCccccchHHHHHHHHHHHHHcCcEEEEE
Q 009550 151 KQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLA-LNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYS 229 (532)
Q Consensus 151 ~~~~~p~g~~vf~~~~~riGv~IC~D~~~pe~~~~~la-~~GadlIl~psas~~~~g~~~~~~~l~~~rA~e~~~~vv~a 229 (532)
.+|+++++|+|++||+|+|||+ ..|.++ ++|||+|++|++++...+. .+|..+++.||.||+++++.+
T Consensus 149 ---------~v~~~~~~k~g~~IC~D~~fpe-~~r~~a~~~Gadlil~ps~~~~~~~~-~~~~~~~~~rAien~~~vv~a 217 (286)
T PLN02798 149 ---------VAVDSPVGRLGLTVCYDLRFPE-LYQQLRFEHGAQVLLVPSAFTKPTGE-AHWEVLLRARAIETQCYVIAA 217 (286)
T ss_pred ---------eEEecCCceEEEEEEEcccChH-HHHHHHHhCCCcEEEECCcCCCCCcH-HHHHHHHHHHHHHhCCEEEEe
Confidence 2889999999999999999996 677888 9999999999998765443 355667899999999999999
Q ss_pred cCcCCCCCceeeeccEEEE-eCCeEEEeeCCCCCCceeEEEEEeechhhhhhhccCCch
Q 009550 230 NHQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSF 287 (532)
Q Consensus 230 N~~G~~~~~~~f~G~S~I~-p~G~ila~~~~f~e~~~~iv~a~iDl~~~~~~R~~~~~~ 287 (532)
|++|.++.+..|.|.|+|+ |+|+++++.+...+ +++++++||++.++..|.+.+.+
T Consensus 218 n~~G~~~~~~~~~G~S~ii~p~G~il~~~~~~~~--e~~~~a~id~~~~~~~r~~~~~~ 274 (286)
T PLN02798 218 AQAGKHNEKRESYGHALIIDPWGTVVARLPDRLS--TGIAVADIDLSLLDSVRTKMPIA 274 (286)
T ss_pred cccCcCCCCceeeeeeEEECCCccchhhcCCCCC--CCEEEEEecHHHHHHHHHhCcch
Confidence 9999875567889999999 99999999875221 37999999999999888876554
No 30
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases). These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking
Probab=100.00 E-value=9.3e-41 Score=337.01 Aligned_cols=238 Identities=16% Similarity=0.031 Sum_probs=193.1
Q ss_pred eEEEEEeccCCCCCH-------HHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccch----------------
Q 009550 4 LKVATCNLNNWALDF-------DCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELD---------------- 60 (532)
Q Consensus 4 ~rVAlvQ~~~~~~d~-------~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~~~---------------- 60 (532)
.|+|+||..+...|. +.|++++.+++++|+++|+|||||||+++|||...+......
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~Nl~~i~~~i~~A~~~gadLIVfPE~~ltGy~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (299)
T cd07567 1 YIAAVVEHHPILSPDPDALQIMEKNLDIYEEIIKSAAKQGADIIVFPEDGLTGFIFTRFVIYPFLEDVPDPEVNWNPCLD 80 (299)
T ss_pred CEEEEEEEEeeccCCccHHHHHHHHHHHHHHHHHHHHHcCCCEEEccccccCCCCCCccccCchhccccccccccccccc
Confidence 379999999988887 999999999999999999999999999999998765432110
Q ss_pred -hhhHHHHHHHHHHhcccCCCeEEEEceeeee-----------C-CeeeEEEEEEe-CCEEEEEEecccCCCCCCccccc
Q 009550 61 -TVTHAWECLKDLLLGDWTDGILCSFGMPVIK-----------G-SERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELR 126 (532)
Q Consensus 61 -~~~~~~~~l~~la~~~~~~~i~iivG~~~~~-----------~-~~lyNsa~vi~-~G~il~~y~K~~L~~~g~f~E~~ 126 (532)
......+.++.|++.+++++++|++|++++. + +++||++++|+ +|+++++|+|+||+ .|..
T Consensus 81 ~~~~~~~~~~~~l~~lAr~~~i~Iv~G~~e~~~~~~~~~~~~~~~~~~yNsa~vi~~~G~iv~~YrK~hLf-----~E~~ 155 (299)
T cd07567 81 PDRFDYTEVLQRLSCAARENSIYVVANLGEKQPCDSSDPHCPPDGRYQYNTNVVFDRDGTLIARYRKYNLF-----GEPG 155 (299)
T ss_pred ccccCchHHHHHHHHHHHHhCeEEEeccccccccccccccCCCCCCceeEEEEEEcCCCCccceEeecccc-----cccc
Confidence 0111123466666666679999999998763 2 26999999999 79999999999996 4888
Q ss_pred ceeecCCCCcccccccchhhhhhccCceecccceeEEeCCc-eEEEEeeccCCCCChHHHHHHhC-CCeEEEEcCCCCcc
Q 009550 127 WFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQFLDT-AVAAEICEELFTPIPPHADLALN-GVEVFMNASGSHHQ 204 (532)
Q Consensus 127 ~f~~G~~~~~~~~~~lp~~~~~~~~~~~~p~g~~vf~~~~~-riGv~IC~D~~~pe~~~~~la~~-GadlIl~psas~~~ 204 (532)
||.+|+... .+|+++++ |||++||||+|||| +.|.++++ |||+|++|++|+..
T Consensus 156 ~~~~G~~~~------------------------~vf~t~~g~kiGvlICyD~~FPE-~~r~la~~~GAdlil~paaw~~~ 210 (299)
T cd07567 156 FDVPPEPEI------------------------VTFDTDFGVTFGIFTCFDILFKE-PALELVKKLGVDDIVFPTAWFSE 210 (299)
T ss_pred ccCCCCCCc------------------------eEEECCCCCEEEEEEEeeccchH-HHHHHHHhCCCCEEEECCccCCC
Confidence 999986321 28899975 99999999999996 67899999 99999999998753
Q ss_pred ccchHHHHHHHHHHHHHcCcEEEEEcCcCCCCCceeeeccEEEE-eC-CeEEEeeCCCCCCceeEEEEEeechhhh
Q 009550 205 LRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVV-VN-GDMIAQGSQFSLKDVEIVVAQVDLDAVA 278 (532)
Q Consensus 205 ~g~~~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~f~G~S~I~-p~-G~ila~~~~f~e~~~~iv~a~iDl~~~~ 278 (532)
.+. .+|..++++||.+|+++++.||++|.. .|.|+|+|+ |+ |+++++++..++ +++++++||++..+
T Consensus 211 ~~~-~~w~~l~~arA~eN~~~vi~~N~~g~~----~~~G~S~iv~P~~G~v~a~~~~~~~--e~~l~~~id~~~~~ 279 (299)
T cd07567 211 LPF-LTAVQIQQAWAYANGVNLLAANYNNPS----AGMTGSGIYAGRSGALVYHYDNEPG--GKLLVAEVPKLPSR 279 (299)
T ss_pred CCc-hhHHHHHHHHHHHcCceEEEecCCCCc----CccccceEEcCCCCcEEEEecCCCC--ceEEEEEccCCccc
Confidence 333 356678899999999999999999864 356999999 99 999999865432 47999999998654
No 31
>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=2e-40 Score=330.20 Aligned_cols=237 Identities=22% Similarity=0.214 Sum_probs=192.8
Q ss_pred EEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhhHH--HHHHHHHHhcccCCCeE
Q 009550 5 KVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHA--WECLKDLLLGDWTDGIL 82 (532)
Q Consensus 5 rVAlvQ~~~~~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~~~~~~~~--~~~l~~la~~~~~~~i~ 82 (532)
|||++|+++..+|++.|++++.+++++|. +|||||||++++||...+......+.+.. .+.++.|++.+++++++
T Consensus 1 kia~~Q~~~~~~d~~~N~~~~~~~i~~a~---adlvvfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~ 77 (259)
T cd07577 1 KVGYVQFNPKFGEVEKNLKKVESLIKGVE---ADLIVLPELFNTGYAFTSKEEVASLAESIPDGPTTRFLQELARETGAY 77 (259)
T ss_pred CEEEEEccCccCCHHHHHHHHHHHHHHhC---CCEEEcccccccCCCcCCHHHHHHhhcccCCChHHHHHHHHHHHhCcE
Confidence 69999999989999999999999998874 99999999999999864321111111110 12345555555578999
Q ss_pred EEEceeeeeCCeeeEEEEEEeCCEEEEEEecccCCCCCCcccccceeecCCCCcccccccchhhhhhccCceecccceeE
Q 009550 83 CSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFI 162 (532)
Q Consensus 83 iivG~~~~~~~~lyNsa~vi~~G~il~~y~K~~L~~~g~f~E~~~f~~G~~~~~~~~~~lp~~~~~~~~~~~~p~g~~vf 162 (532)
+++|++++.++++||++++|++++++++|+|+||++ .|++||+||+... .+|
T Consensus 78 ii~G~~~~~~~~~yNs~~vi~~~Gi~~~y~K~~l~~----~e~~~~~~G~~~~------------------------~~~ 129 (259)
T cd07577 78 IVAGLPERDGDKFYNSAVVVGPEGYIGIYRKTHLFY----EEKLFFEPGDTGF------------------------RVF 129 (259)
T ss_pred EEecceeccCCceEEEEEEECCCccEeeEeeccCCh----hhhccccCCCCCC------------------------ceE
Confidence 999999888889999999999544999999999974 5889999998321 289
Q ss_pred EeCCceEEEEeeccCCCCChHHHHHHhCCCeEEEEcCCCCccccchHHHHHHHHHHHHHcCcEEEEEcCcCCCC---Cce
Q 009550 163 QFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDG---GRL 239 (532)
Q Consensus 163 ~~~~~riGv~IC~D~~~pe~~~~~la~~GadlIl~psas~~~~g~~~~~~~l~~~rA~e~~~~vv~aN~~G~~~---~~~ 239 (532)
+++++|+|++||+|.|||+ ..+.++++|||+|++|++++.. .+..+++.||.||+++++++|++|.+. ++.
T Consensus 130 ~~~~~~ig~~IC~D~~fpe-~~r~~~~~Gadli~~ps~~~~~-----~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~ 203 (259)
T cd07577 130 DIGDIRIGVMICFDWYFPE-AARTLALKGADIIAHPANLVLP-----YCPKAMPIRALENRVFTITANRIGTEERGGETL 203 (259)
T ss_pred EeCCcEEEEEEEcCcccch-HHHHHHHcCCCEEEECCccCCc-----hhhhhhhHhhhhcCceEEEEecCcccCCCCCCc
Confidence 9999999999999999997 6789999999999999997532 234567899999999999999999762 457
Q ss_pred eeeccEEEE-eCCeEEEeeCCCCCCceeEEEEEeechhhhhhh
Q 009550 240 YFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFR 281 (532)
Q Consensus 240 ~f~G~S~I~-p~G~ila~~~~f~e~~~~iv~a~iDl~~~~~~R 281 (532)
.|.|.|+|+ |+|+++++++.++ ++++++++|++.++..|
T Consensus 204 ~~~G~S~i~~p~G~i~~~~~~~~---e~~~~~~id~~~~~~~~ 243 (259)
T cd07577 204 RFIGKSQITSPKGEVLARAPEDG---EEVLVAEIDPRLARDKR 243 (259)
T ss_pred eEeeeeEEECCCCCEEeecCCCC---CcEEEEEEchHHhhccc
Confidence 799999999 9999999988764 36899999999877544
No 32
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=100.00 E-value=2.7e-39 Score=320.13 Aligned_cols=240 Identities=26% Similarity=0.311 Sum_probs=207.3
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccc----hhhhHHHHHHHHHHhcccCCCe
Q 009550 6 VATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLEL----DTVTHAWECLKDLLLGDWTDGI 81 (532)
Q Consensus 6 VAlvQ~~~~~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~~----~~~~~~~~~l~~la~~~~~~~i 81 (532)
||++|+++..+|++.|++++.+++++|.++|+|||||||++++||...+....+ +......+.+.++++ ++++
T Consensus 1 ia~~Q~~~~~~~~~~n~~~~~~~i~~a~~~g~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~l~~~a~---~~~i 77 (253)
T cd07197 1 IAAVQLAPKIGDVEANLAKALRLIKEAAEQGADLIVLPELFLTGYSFESAKEDLDLAEELDGPTLEALAELAK---ELGI 77 (253)
T ss_pred CEEEEccCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCccccCCccccchhhhhhcccCCchHHHHHHHHHH---HhCe
Confidence 699999999899999999999999999999999999999999999887654321 222334445555554 6899
Q ss_pred EEEEceeeeeCCeeeEEEEEEe-CCEEEEEEecccCCCCCCcccccceeecCCCCcccccccchhhhhhccCceecccce
Q 009550 82 LCSFGMPVIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYG 160 (532)
Q Consensus 82 ~iivG~~~~~~~~lyNsa~vi~-~G~il~~y~K~~L~~~g~f~E~~~f~~G~~~~~~~~~~lp~~~~~~~~~~~~p~g~~ 160 (532)
++++|++++.++++||+++++. +|++++.|+|.||++ |.|..||++|+.. .
T Consensus 78 ~ii~G~~~~~~~~~~N~~~~i~~~G~i~~~~~K~~l~~---~~E~~~~~~g~~~-------------------------~ 129 (253)
T cd07197 78 YIVAGIAEKDGDKLYNTAVVIDPDGEIIGKYRKIHLFD---FGERRYFSPGDEF-------------------------P 129 (253)
T ss_pred EEEeeeEEccCCceEEEEEEECCCCeEEEEEEEeecCC---CcccceecCCCCC-------------------------c
Confidence 9999999887789999999998 689999999999987 5688899999764 2
Q ss_pred eEEeCCceEEEEeeccCCCCChHHHHHHhCCCeEEEEcCCCCccccchHHHHHHHHHHHHHcCcEEEEEcCcCCCCCcee
Q 009550 161 FIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLY 240 (532)
Q Consensus 161 vf~~~~~riGv~IC~D~~~pe~~~~~la~~GadlIl~psas~~~~g~~~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~ 240 (532)
+|+++++|+|++||+|+|+|+ +.+.++.+|+|+|++|+++++.. ..++..+.+.+|.|+++++++||++|.. ++..
T Consensus 130 ~f~~~~~~ig~~IC~d~~~~~-~~~~~~~~g~dli~~ps~~~~~~--~~~~~~~~~~~A~e~~~~vv~~n~~G~~-~~~~ 205 (253)
T cd07197 130 VFDTPGGKIGLLICYDLRFPE-LARELALKGADIILVPAAWPTAR--REHWELLLRARAIENGVYVVAANRVGEE-GGLE 205 (253)
T ss_pred eEEcCCceEEEEEEecCCCcH-HHHHHHHCCCcEEEECCcCCCcc--hHHHHHHHHHHHHHhCCeEEEecCCCCC-CCcc
Confidence 899999999999999999996 57899999999999999987643 4567788999999999999999999988 6888
Q ss_pred eeccEEEE-eCCeEEEeeCCCCCCceeEEEEEeechhhhhhhccC
Q 009550 241 FDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSI 284 (532)
Q Consensus 241 f~G~S~I~-p~G~ila~~~~f~e~~~~iv~a~iDl~~~~~~R~~~ 284 (532)
|.|.|.|+ |+|+++++.+.+ + +++++++|++.+++.|...
T Consensus 206 ~~G~S~i~~p~G~~~~~~~~~-~---~~~~~~id~~~~~~~r~~~ 246 (253)
T cd07197 206 FAGGSMIVDPDGEVLAEASEE-E---GILVAELDLDELREARKRW 246 (253)
T ss_pred ccceeEEECCCCceeeecCCC-C---cEEEEEeCHHHHHHHHhhC
Confidence 99999999 999999999887 3 6899999999999888754
No 33
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=1.3e-39 Score=330.25 Aligned_cols=254 Identities=17% Similarity=0.091 Sum_probs=194.4
Q ss_pred EEEEEeccCCC----CCHHHHHHHHHHHHHHHHH-----CCCeEEEcCCCCcCCCCCCcccccchhhhHH----HHHHHH
Q 009550 5 KVATCNLNNWA----LDFDCNLKNIKESIGRAKE-----AGAVIRLGPELEITGYGCEDHFLELDTVTHA----WECLKD 71 (532)
Q Consensus 5 rVAlvQ~~~~~----~d~~~N~~~i~~~i~~A~~-----~gadLvVfPEl~ltGy~~~d~~~~~~~~~~~----~~~l~~ 71 (532)
.++++|..+.. +|++.|++++.+++++|++ +|+|||||||+++|||.+.+......+.+.+ .+.++.
T Consensus 2 ~~~~~~~~~~~~~~~~d~~~Nl~~~~~~i~~A~~~~~~~~gadlivfPE~~ltGy~~~~~~~~~~~~~~a~~~~~~~~~~ 81 (294)
T cd07582 2 TALALQPTCEAAEDRADILANIDRINEQIDAAVGFSGPGLPVRLVVLPEYALQGFPMGEPREVWQFDKAAIDIPGPETEA 81 (294)
T ss_pred eeEEEecccccccChhhHHHHHHHHHHHHHHHHHhcccCCCceEEEcCccccccCCcccchhhhhhhhccccCCCHHHHH
Confidence 57888987755 8999999999999999987 4799999999999999876543211111111 123445
Q ss_pred HHhcccCCCeEEEEceeeeeC---CeeeEEEEEEe-CCEEEEEEecccCCCCCC-c------ccc-cceeecCCCCcccc
Q 009550 72 LLLGDWTDGILCSFGMPVIKG---SERYNCQVLCL-NRKIIMIRPKLWLANDGN-Y------REL-RWFTAWKQKDQLED 139 (532)
Q Consensus 72 la~~~~~~~i~iivG~~~~~~---~~lyNsa~vi~-~G~il~~y~K~~L~~~g~-f------~E~-~~f~~G~~~~~~~~ 139 (532)
|++.+++++++|++|.+++.+ +++||++++|+ +|+++++|+|+||+...+ + .|. .++.+|...
T Consensus 82 l~~~A~~~~i~iv~G~~e~~~~~~~~~yNsa~~i~~~G~i~~~yrK~hl~~~~~e~~p~~~~~~~~~~~g~g~~~----- 156 (294)
T cd07582 82 LGEKAKELNVYIAANAYERDPDFPGLYFNTAFIIDPSGEIILRYRKMNSLAAEGSPSPHDVWDEYIEVYGYGLDA----- 156 (294)
T ss_pred HHHHHHHcCEEEEEeeeeecCCCCCcEEEEEEEECCCCcEEEEEeeeccCccccccCccchhhhhcccCCCcccc-----
Confidence 555555689999999987653 68999999999 799999999999975311 0 110 112221000
Q ss_pred cccchhhhhhccCceecccceeEEeCCceEEEEeeccCCCCChHHHHHHhCCCeEEEEcCCCCccccchHHHHHHHHHHH
Q 009550 140 FQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISAT 219 (532)
Q Consensus 140 ~~lp~~~~~~~~~~~~p~g~~vf~~~~~riGv~IC~D~~~pe~~~~~la~~GadlIl~psas~~~~g~~~~~~~l~~~rA 219 (532)
.+ .+|+++++|||++||||+|||+ +.|.++++|||+|++|+++++..+ ...|..+.++||
T Consensus 157 --------------~~----~v~~~~~~~iG~~ICyD~~fpe-~~r~la~~Gadlil~psa~~~~~~-~~~~~~~~~arA 216 (294)
T cd07582 157 --------------LF----PVADTEIGNLGCLACEEGLYPE-VARGLAMNGAEVLLRSSSEVPSVE-LDPWEIANRARA 216 (294)
T ss_pred --------------cc----eeecCCCceEEEEEeecccChH-HHHHHHHCCCcEEEEcCCCCCCcc-hhhHHHHHHHHH
Confidence 01 3788999999999999999996 688999999999999999876443 234556789999
Q ss_pred HHcCcEEEEEcCcCCCCC---ceeeeccEEEE-eCCeEEEeeCCCCCCceeEEEEEeechhhhhhhccCC
Q 009550 220 HSRGGVYMYSNHQGCDGG---RLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSIS 285 (532)
Q Consensus 220 ~e~~~~vv~aN~~G~~~~---~~~f~G~S~I~-p~G~ila~~~~f~e~~~~iv~a~iDl~~~~~~R~~~~ 285 (532)
.||+++++++|++|.++. ...|.|.|+|+ |+|+++++++.+.+ +++++++||++.++..|.+.+
T Consensus 217 ~en~~~vv~aN~~G~~~~~~~~~~~~G~S~ivdp~G~vla~~~~~~~--e~il~~~id~~~~~~~R~~~~ 284 (294)
T cd07582 217 LENLAYVVSANSGGIYGSPYPADSFGGGSMIVDYKGRVLAEAGYGPG--SMVAGAEIDIEALRRARARPG 284 (294)
T ss_pred HhcCCEEEEecccccCcccccCceecceeEEECCCCCEEEeCCCCCC--CeEEEEEEcHHHHHHHHHhcC
Confidence 999999999999997643 36799999999 99999999987722 379999999999998887543
No 34
>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases). Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=2.4e-39 Score=326.10 Aligned_cols=249 Identities=17% Similarity=0.064 Sum_probs=195.8
Q ss_pred eEEEEEeccCCC-CCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCC---CCccc-ccc---hhhhHHHHHHHHHHhc
Q 009550 4 LKVATCNLNNWA-LDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYG---CEDHF-LEL---DTVTHAWECLKDLLLG 75 (532)
Q Consensus 4 ~rVAlvQ~~~~~-~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~---~~d~~-~~~---~~~~~~~~~l~~la~~ 75 (532)
||||++|+++.. +|++.|++++++++++|+++|||||||||++++||. ..+.. ... .........++.+++.
T Consensus 1 m~va~~Q~~~~~~~~~~~n~~~i~~~i~~A~~~gadlivfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 80 (280)
T cd07574 1 VRVAAAQYPLRRYASFEEFAAKVEYWVAEAAGYGADLLVFPEYFTMELLSLLPEAIDGLDEAIRALAALTPDYVALFSEL 80 (280)
T ss_pred CeeEEEEccCcCCCCHHHHHHHHHHHHHHHHHcCCCEEECchHhHHHHHHhCCcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999874 899999999999999999999999999999999853 22221 000 0011112234444444
Q ss_pred ccCCCeEEEEce-eeeeCCeeeEEEEEEe-CCEEEEEEecccCCCCCCcccccceeecCCCCcccccccchhhhhhccCc
Q 009550 76 DWTDGILCSFGM-PVIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQK 153 (532)
Q Consensus 76 ~~~~~i~iivG~-~~~~~~~lyNsa~vi~-~G~il~~y~K~~L~~~g~f~E~~~f~~G~~~~~~~~~~lp~~~~~~~~~~ 153 (532)
++++++++++|. +++.++++||++++++ +|++ ++|+|.||++++ .|..+|.+|+..
T Consensus 81 a~~~~i~iv~G~~~~~~~~~~yNs~~~i~~~G~v-~~y~K~~l~~~e--~~~~~~~~G~~~------------------- 138 (280)
T cd07574 81 ARKYGINIIAGSMPVREDGRLYNRAYLFGPDGTI-GHQDKLHMTPFE--REEWGISGGDKL------------------- 138 (280)
T ss_pred HHHhCCEEEecceEEcCCCCeEEEEEEECCCCCE-EEEeeeccCchh--hhcccccCCCCc-------------------
Confidence 556899999995 5567789999999998 5666 999999998753 233457787653
Q ss_pred eecccceeEEeCCceEEEEeeccCCCCChHHHHHHhCCCeEEEEcCCCCccccchHHHHHHHHHHHHHcCcEEEEEcCcC
Q 009550 154 SVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQG 233 (532)
Q Consensus 154 ~~p~g~~vf~~~~~riGv~IC~D~~~pe~~~~~la~~GadlIl~psas~~~~g~~~~~~~l~~~rA~e~~~~vv~aN~~G 233 (532)
.+|+++++|||++||+|+|||+ +.|.++++|||+|++|++++...+.. ++....++||.||+++++++|++|
T Consensus 139 ------~v~~~~~~~ig~~IC~D~~fpe-~~r~l~~~ga~ii~~ps~~~~~~~~~-~~~~~~~arA~en~~~vv~an~~G 210 (280)
T cd07574 139 ------KVFDTDLGKIGILICYDSEFPE-LARALAEAGADLLLVPSCTDTRAGYW-RVRIGAQARALENQCYVVQSGTVG 210 (280)
T ss_pred ------eEEecCCccEEEEEecccccHH-HHHHHHHcCCCEEEECCcCCccccHH-HHHHHHHHHHHhhCceEEEeCCCC
Confidence 2899999999999999999996 68899999999999999877544432 333457899999999999999999
Q ss_pred CCC---CceeeeccEEEE-eC------CeEEEeeCCCCCCceeEEEEEeechhhhhhhccCC
Q 009550 234 CDG---GRLYFDGCSCVV-VN------GDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSIS 285 (532)
Q Consensus 234 ~~~---~~~~f~G~S~I~-p~------G~ila~~~~f~e~~~~iv~a~iDl~~~~~~R~~~~ 285 (532)
.++ ....|.|+|+|+ |+ |.++++++.++ +++++++||++.++..|...+
T Consensus 211 ~~~~~~~~~~~~G~S~i~~P~~~~~~~g~~l~~~~~~~---e~~~~a~iD~~~~~~~R~~~~ 269 (280)
T cd07574 211 NAPWSPAVDVNYGQAAVYTPCDFGFPEDGILAEGEPNT---EGWLIADLDLEALRRLREEGS 269 (280)
T ss_pred CCCCccccccccccceeecCCCCCCCCCCeEeecCCCC---CceEEEecCHHHHHHHhhcCC
Confidence 873 246788999999 85 88999987764 369999999999999988644
No 35
>PRK13287 amiF formamidase; Provisional
Probab=100.00 E-value=2.6e-38 Score=324.62 Aligned_cols=248 Identities=19% Similarity=0.168 Sum_probs=197.8
Q ss_pred CceEEEEEeccC----CCCCHHHHHHHHHHHHHHHHHC--CCeEEEcCCCCcCCCCCCcccccchhhhHH-HHHHHHHHh
Q 009550 2 RLLKVATCNLNN----WALDFDCNLKNIKESIGRAKEA--GAVIRLGPELEITGYGCEDHFLELDTVTHA-WECLKDLLL 74 (532)
Q Consensus 2 ~~~rVAlvQ~~~----~~~d~~~N~~~i~~~i~~A~~~--gadLvVfPEl~ltGy~~~d~~~~~~~~~~~-~~~l~~la~ 74 (532)
..||||++|++. ..+|++.|++++.+++++|++. |+|||||||++++||..... ...++.... .+.++.+++
T Consensus 12 ~~l~VAlvQ~~~~~~~~~~d~~~Nl~~i~~~i~~A~~~~~gadLVVfPE~~l~G~~~~~~-~~~~~a~~~~g~~~~~l~~ 90 (333)
T PRK13287 12 EGVLVALIQYPVPVVESRADIDKQIEQIIKTVHKTKAGYPGLDLIVFPEYSTQGLNTKKW-TTEEFLCTVDGPEVDAFAQ 90 (333)
T ss_pred CceEEEEEEcccccCCchhhHHHHHHHHHHHHHHHHhcCCCCcEEEcCCcccccCCcccc-chhhhcccCCCHHHHHHHH
Confidence 469999999996 4689999999999999999864 89999999999999986432 111111111 134566666
Q ss_pred cccCCCeEEEEceeeeeC-C-eeeEEEEEEe-CCEEEEEEecccCCCCCCcccccceeecCCCCcccccccchhhhhhcc
Q 009550 75 GDWTDGILCSFGMPVIKG-S-ERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALK 151 (532)
Q Consensus 75 ~~~~~~i~iivG~~~~~~-~-~lyNsa~vi~-~G~il~~y~K~~L~~~g~f~E~~~f~~G~~~~~~~~~~lp~~~~~~~~ 151 (532)
.++++++++++|..++.+ + ++|||+++|+ +|+++++|+|+|++ .+..+|+||+...
T Consensus 91 ~a~~~~i~~~~g~~e~~~~~~~~yNsa~vi~~~G~i~~~YrK~h~~-----~p~~~~~pG~~~~---------------- 149 (333)
T PRK13287 91 ACKENKVWGVFSIMERNPDGNEPYNTAIIIDDQGEIILKYRKLHPW-----VPVEPWEPGDLGI---------------- 149 (333)
T ss_pred HHHHcCeEEEEeeEEEcCCCCceEEEEEEECCCCcEEEEEeecccC-----CccccccCCCCCC----------------
Confidence 666789999998876643 3 3999999998 69999999999973 1233567776311
Q ss_pred CceecccceeEEeC-CceEEEEeeccCCCCChHHHHHHhCCCeEEEEcCCCCccccchHHHHHHHHHHHHHcCcEEEEEc
Q 009550 152 QKSVPFGYGFIQFL-DTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSN 230 (532)
Q Consensus 152 ~~~~p~g~~vf~~~-~~riGv~IC~D~~~pe~~~~~la~~GadlIl~psas~~~~g~~~~~~~l~~~rA~e~~~~vv~aN 230 (532)
.+|++. |.|||++||+|.|||+ ..|.++++|||+|++|+++++... ++|....++||.+|+++++++|
T Consensus 150 --------~v~~~~~g~kiG~~ICyD~~fPe-~~R~~a~~GAeill~~s~~~~~~~--~~w~~~~~arA~en~~~vv~an 218 (333)
T PRK13287 150 --------PVCDGPGGSKLAVCICHDGMFPE-MAREAAYKGANVMIRISGYSTQVR--EQWILTNRSNAWQNLMYTASVN 218 (333)
T ss_pred --------ceEECCCCceEEEEEEecccchH-HHHHHHHCCCeEEEECCccCCcch--hHHHHHHHHHHHhCCcEEEEEe
Confidence 277775 6799999999999996 778999999999999999876532 3444567889999999999999
Q ss_pred CcCCCCCceeeeccEEEE-eCCeEEEeeCCCCCCceeEEEEEeechhhhhhhccCCc
Q 009550 231 HQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISS 286 (532)
Q Consensus 231 ~~G~~~~~~~f~G~S~I~-p~G~ila~~~~f~e~~~~iv~a~iDl~~~~~~R~~~~~ 286 (532)
++|.+ +...|.|+|+|+ |+|+++++++.++ +++++++||++.+++.|...+.
T Consensus 219 ~~G~~-~~~~~~G~S~Iidp~G~vl~~~~~~~---~~ii~aeid~~~~~~~R~~~~~ 271 (333)
T PRK13287 219 LAGYD-GVFYYFGEGQVCNFDGTTLVQGHRNP---WEIVTAEVRPDLADEARLGWGL 271 (333)
T ss_pred ccccC-CCeeeeeeeEEECCCCcEEEeCCCCC---CeEEEEEEeHHHHHHHHHhcCc
Confidence 99988 567789999999 9999999998764 3799999999999999986554
No 36
>PRK13286 amiE acylamide amidohydrolase; Provisional
Probab=100.00 E-value=2.5e-38 Score=325.17 Aligned_cols=245 Identities=16% Similarity=0.140 Sum_probs=193.0
Q ss_pred ceEEEEEeccC----CCCCHHHHHHHHHHHHHHHH--HCCCeEEEcCCCCcCCCCCCc--ccccchhhhHHHHHHHHHHh
Q 009550 3 LLKVATCNLNN----WALDFDCNLKNIKESIGRAK--EAGAVIRLGPELEITGYGCED--HFLELDTVTHAWECLKDLLL 74 (532)
Q Consensus 3 ~~rVAlvQ~~~----~~~d~~~N~~~i~~~i~~A~--~~gadLvVfPEl~ltGy~~~d--~~~~~~~~~~~~~~l~~la~ 74 (532)
.++||++|.+. ...|++.|++++.+++++|+ ..|+|||||||++++||.... .......+.. +.++.|++
T Consensus 12 ~l~va~vQ~~~p~~~~~~di~~Nl~~i~~~i~~a~~~~~gadLVVfPE~~l~G~~y~~~~~~~~a~~i~g--~~~~~l~~ 89 (345)
T PRK13286 12 TVGVAVVNYKMPRLHTKAEVLENARKIADMIVGMKQGLPGMDLVIFPEYSTHGIMYDRQEMYETASTIPG--EETAIFAE 89 (345)
T ss_pred ceEEEEEEcCCCccCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEcCCccccCCCcChHHHHHhcccCCC--HHHHHHHH
Confidence 48999999983 34689999999999999887 458999999999999965322 1111111111 22344455
Q ss_pred cccCCCeEEEEcee-ee----eCCeeeEEEEEEe-CCEEEEEEecccCCCCCCcccccceeecCCCCcccccccchhhhh
Q 009550 75 GDWTDGILCSFGMP-VI----KGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISV 148 (532)
Q Consensus 75 ~~~~~~i~iivG~~-~~----~~~~lyNsa~vi~-~G~il~~y~K~~L~~~g~f~E~~~f~~G~~~~~~~~~~lp~~~~~ 148 (532)
.++++++++++|.. ++ .++++||++++|+ +|+|+++|+|+|++ .+..+|.||+..
T Consensus 90 ~A~~~~i~~v~~i~ge~~~~~~~~~~yNta~vi~~~G~i~~~YrK~~p~-----~~~e~~~pG~~~-------------- 150 (345)
T PRK13286 90 ACRKAKVWGVFSLTGERHEEHPRKAPYNTLILINDKGEIVQKYRKIMPW-----CPIEGWYPGDCT-------------- 150 (345)
T ss_pred HHHHcCEEEEEeccccccccCCCCceeEEEEEECCCCeEEEEEEeecCC-----chhhceecCCCC--------------
Confidence 55578888887765 33 1356999999998 79999999999975 234567888753
Q ss_pred hccCceecccceeEEeC-CceEEEEeeccCCCCChHHHHHHhCCCeEEEEcCCCCccccchHHHHHHHHHHHHHcCcEEE
Q 009550 149 ALKQKSVPFGYGFIQFL-DTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYM 227 (532)
Q Consensus 149 ~~~~~~~p~g~~vf~~~-~~riGv~IC~D~~~pe~~~~~la~~GadlIl~psas~~~~g~~~~~~~l~~~rA~e~~~~vv 227 (532)
.+|++. |.|||++||+|.|||| ..|.++++|||+|++|++++.. ..++|..++++||.+|+++++
T Consensus 151 -----------~v~~~~~G~kiG~lIC~D~~fPE-~~R~la~~GAelii~psa~~~~--~~~~~~~~~rarA~eN~~yVv 216 (345)
T PRK13286 151 -----------YVSEGPKGLKISLIICDDGNYPE-IWRDCAMKGAELIVRCQGYMYP--AKEQQVLVAKAMAWANNCYVA 216 (345)
T ss_pred -----------EEEeCCCCcEEEEEEEecccChH-HHHHHHHcCCeEEEEccccCCC--chHHHHHHHHHHHHHCCCEEE
Confidence 277774 5699999999999996 7889999999999999987643 335667789999999999999
Q ss_pred EEcCcCCCCCceeeeccEEEE-eCCeEEEeeCCCCCCceeEEEEEeechhhhhhhccCCc
Q 009550 228 YSNHQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISS 286 (532)
Q Consensus 228 ~aN~~G~~~~~~~f~G~S~I~-p~G~ila~~~~f~e~~~~iv~a~iDl~~~~~~R~~~~~ 286 (532)
+||++|.+ +...|.|+|+|+ |+|+++++++.++ +++++++||++.+++.|.....
T Consensus 217 ~aN~~G~~-~~~~~~G~S~Ivdp~G~vla~~~~~~---e~ii~adld~~~i~~~R~~~~~ 272 (345)
T PRK13286 217 VANAAGFD-GVYSYFGHSAIIGFDGRTLGECGEEE---MGIQYAQLSVSQIRDARRNDQS 272 (345)
T ss_pred EEeccccc-CCceeeeeEEEECCCCcEEEecCCCC---CeEEEEEEeHHHHHHHHHhCCc
Confidence 99999987 567899999999 9999999987664 3799999999999999986544
No 37
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases). ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.
Probab=100.00 E-value=4e-37 Score=308.27 Aligned_cols=223 Identities=18% Similarity=0.124 Sum_probs=185.0
Q ss_pred eEEEEEeccCCCC------CHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhhHHHHHHHHHHhccc
Q 009550 4 LKVATCNLNNWAL------DFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDW 77 (532)
Q Consensus 4 ~rVAlvQ~~~~~~------d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~ 77 (532)
+|||++|+++..+ |++.|++++.+++++|+++|+|||||||++++||... ....++++++.++
T Consensus 1 ~~ia~~Q~~~~~~~~~~~~d~~~nl~~~~~~i~~a~~~ga~lvvfPE~~l~g~~~~-----------~~~~~~~l~~~ak 69 (270)
T cd07571 1 LRVALVQGNIPQDEKWDPEQRQATLDRYLDLTRELADEKPDLVVWPETALPFDLQR-----------DPDALARLARAAR 69 (270)
T ss_pred CeEEEEeCCCCcccccCHHHHHHHHHHHHHHHhhcccCCCCEEEecCCcCCccccc-----------CHHHHHHHHHHHH
Confidence 5899999998776 8899999999999999999999999999999999621 1223455555555
Q ss_pred CCCeEEEEceeeeeC--CeeeEEEEEEe-CCEEEEEEecccCCCCCCc---------------ccccceeecCCCCcccc
Q 009550 78 TDGILCSFGMPVIKG--SERYNCQVLCL-NRKIIMIRPKLWLANDGNY---------------RELRWFTAWKQKDQLED 139 (532)
Q Consensus 78 ~~~i~iivG~~~~~~--~~lyNsa~vi~-~G~il~~y~K~~L~~~g~f---------------~E~~~f~~G~~~~~~~~ 139 (532)
++++++++|++++.+ +++||++++|+ +|+++++|+|.||++++++ .|.++|.||+..
T Consensus 70 ~~~i~ii~G~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~L~p~~e~~p~~~~~~~~~~~~~~e~~~~~~G~~~----- 144 (270)
T cd07571 70 AVGAPLLTGAPRREPGGGRYYNSALLLDPGGGILGRYDKHHLVPFGEYVPLRDLLRFLGLLFDLPMGDFSPGTGP----- 144 (270)
T ss_pred hcCCeEEEeeeeeccCCCceEEEEEEECCCCCCcCcEeeeeccCCCCCcCcHHHHHHHHHhcccccCCCCCCCCC-----
Confidence 789999999988765 48999999998 6889999999999988764 366778888654
Q ss_pred cccchhhhhhccCceecccceeEEeCC-ceEEEEeeccCCCCChHHHHHHhCCCeEEEEcCCCCcccc--chHHHHHHHH
Q 009550 140 FQLPNEISVALKQKSVPFGYGFIQFLD-TAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLR--KLDYRIRAFI 216 (532)
Q Consensus 140 ~~lp~~~~~~~~~~~~p~g~~vf~~~~-~riGv~IC~D~~~pe~~~~~la~~GadlIl~psas~~~~g--~~~~~~~l~~ 216 (532)
.+|++++ +|+|++||+|.|||+ ..+.++.+|||+|++|+++.|... ...+++.+.+
T Consensus 145 --------------------~vf~~~~~~r~g~~IC~D~~fpe-~~r~~~~~ga~iil~ps~~~~~~~~~~~~~~~~~~~ 203 (270)
T cd07571 145 --------------------QPLLLGGGVRVGPLICYESIFPE-LVRDAVRQGADLLVNITNDAWFGDSAGPYQHLAMAR 203 (270)
T ss_pred --------------------CccccCCCceEEEEEEeeeeChH-HHHhhcccCCCEEEEcCcccccCCCcchHHHHHHHH
Confidence 2889999 999999999999996 678999999999999998543211 2345667889
Q ss_pred HHHHHcCcEEEEEcCcCCCCCceeeeccEEEE-eCCeEEEeeCCCCCCceeEEEEEeechh
Q 009550 217 SATHSRGGVYMYSNHQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDA 276 (532)
Q Consensus 217 ~rA~e~~~~vv~aN~~G~~~~~~~f~G~S~I~-p~G~ila~~~~f~e~~~~iv~a~iDl~~ 276 (532)
.||.||++++|+||+. |.|+|+ |+|+++++++.++ +++++++||++.
T Consensus 204 arA~en~~~vv~~n~~----------G~S~ivdp~G~ii~~~~~~~---e~~~~~~i~~~~ 251 (270)
T cd07571 204 LRAIETGRPLVRAANT----------GISAVIDPDGRIVARLPLFE---AGVLVAEVPLRT 251 (270)
T ss_pred HHHHHhCCCEEEEcCC----------eeeEEECCCCcEEeecCCCc---ceEEEEEeccCC
Confidence 9999999999999975 457888 9999999998764 379999999864
No 38
>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases). Saccharomyces cerevisiae NTA1 functions in the N-end rule protein degradation pathway. It specifically deaminates the N-terminal asparagine and glutamine residues of substrates of this pathway, to aspartate and glutamate respectively, these latter are the destabilizing residues. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 3.
Probab=100.00 E-value=1.6e-35 Score=299.28 Aligned_cols=229 Identities=17% Similarity=0.177 Sum_probs=163.6
Q ss_pred EEEEEeccCCCCCHHHHHHHHHHHHHHHHH----CCCeEEEcCCCCcCCCCCCcccccchhhhHH--HHHHHHHHhcccC
Q 009550 5 KVATCNLNNWALDFDCNLKNIKESIGRAKE----AGAVIRLGPELEITGYGCEDHFLELDTVTHA--WECLKDLLLGDWT 78 (532)
Q Consensus 5 rVAlvQ~~~~~~d~~~N~~~i~~~i~~A~~----~gadLvVfPEl~ltGy~~~d~~~~~~~~~~~--~~~l~~la~~~~~ 78 (532)
|||++|+++..+|++.|++++.+++++|++ +|+|||||||+++|||...+......+.+.. .+.++.+++.+++
T Consensus 1 rIA~vQ~~~~~~d~~~Nl~~~~~~i~~A~~~~~~~gadLIVfPEl~ltGY~~~~~~~~~~~ae~~~~g~~~~~l~~lAk~ 80 (295)
T cd07566 1 RIACLQLNPQIGQVEENLSRAWELLDKTKKRAKLKKPDILVLPELALTGYNFHSLEHIKPYLEPTTSGPSFEWAREVAKK 80 (295)
T ss_pred CEEEEECCCccCCHHHHHHHHHHHHHHHHhhccCCCCcEEEcCCCCcccCCcccHHHHHHHHHhcCCCHHHHHHHHHHHh
Confidence 699999999889999999999999999988 8999999999999999875432211222111 1233444444557
Q ss_pred CCeEEEEceeeeeC---CeeeEEEEEEe-CCEEEEEEecccCCCCCCcccccceeecCCCCcccccccchhhhhhccCce
Q 009550 79 DGILCSFGMPVIKG---SERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKS 154 (532)
Q Consensus 79 ~~i~iivG~~~~~~---~~lyNsa~vi~-~G~il~~y~K~~L~~~g~f~E~~~f~~G~~~~~~~~~~lp~~~~~~~~~~~ 154 (532)
++++|++|++++.+ +++|||+++|+ +|+++++|+|+||++. |..|+.++.... ...+.. ..+|+.
T Consensus 81 ~~i~Iv~G~~e~~~~~~~~~yNta~vi~~~G~ii~~YrK~HL~~~----~~~~~~~e~~~~-~~~~~~------~~~G~~ 149 (295)
T cd07566 81 FNCHVVIGYPEKVDESSPKLYNSALVVDPEGEVVFNYRKSFLYYT----DEEWGCEENPGG-FQTFPL------PFAKDD 149 (295)
T ss_pred cCCEEEEeeeEecCCCCCceEEEEEEEcCCCeEEEEEeccccCCC----CcccccCCCCCc-cccccc------cccccc
Confidence 89999999988754 48999999999 7999999999999864 233443333110 000000 001111
Q ss_pred ecccceeEEeCCceEEEEeeccCC---C--C----ChHHHHHHhCCCeEEEEcCCCCccccchH-------HH---HHHH
Q 009550 155 VPFGYGFIQFLDTAVAAEICEELF---T--P----IPPHADLALNGVEVFMNASGSHHQLRKLD-------YR---IRAF 215 (532)
Q Consensus 155 ~p~g~~vf~~~~~riGv~IC~D~~---~--p----e~~~~~la~~GadlIl~psas~~~~g~~~-------~~---~~l~ 215 (532)
.+. .++.+.++|||++||||+| | | | ..|.++++|||||++|++|+...+... .+ ..++
T Consensus 150 ~~~--~~~~~~~~kiG~~ICyDl~~~rF~~P~~~~E-~~r~la~~Gadii~~paaw~~~~~~~~~~~~~~~~~~~~~~~~ 226 (295)
T cd07566 150 DFD--GGSVDVTLKTSIGICMDLNPYKFEAPFTDFE-FATHVLDNGTELIICPMAWLHSLSPTELTVLPQEPDTETVSYW 226 (295)
T ss_pred ccc--ccccCCcceeEEEEEecCCcccccCCcchHH-HHHHHHHCCCCEEEEechhcCCCCcccccccCCCcchhHHHHH
Confidence 000 0233457899999999996 7 5 5 678999999999999999875433100 11 2345
Q ss_pred HHHHH------HcCcEEEEEcCcCCCCCceeeeccEEEE
Q 009550 216 ISATH------SRGGVYMYSNHQGCDGGRLYFDGCSCVV 248 (532)
Q Consensus 216 ~~rA~------e~~~~vv~aN~~G~~~~~~~f~G~S~I~ 248 (532)
++|+. ||++++++||++|.+ ++..|.|+|+|+
T Consensus 227 ~~ra~~~~a~~eN~~~vv~~Nr~G~~-~~~~f~G~S~i~ 264 (295)
T cd07566 227 LQRFEPLRAEPLEGTQVVFCNRIGTE-NDTLYAGSSAVI 264 (295)
T ss_pred HHhhcccccCCCCceEEEEEeccCcc-CCceecCcccee
Confidence 56664 999999999999998 678899999987
No 39
>KOG0807 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.8e-36 Score=279.38 Aligned_cols=255 Identities=16% Similarity=0.131 Sum_probs=201.4
Q ss_pred eEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhhH-HHHHHHHHHhcccCCCeE
Q 009550 4 LKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTH-AWECLKDLLLGDWTDGIL 82 (532)
Q Consensus 4 ~rVAlvQ~~~~~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~~~~~~~-~~~~l~~la~~~~~~~i~ 82 (532)
-+||++|+.. ..|...|++...++|++|+++||+++.|||.+- |...+....-++.+. ..+.+++..+.+++++|+
T Consensus 16 ~~vAv~Qm~S-~~Dl~kNl~~~keLi~eA~~k~A~~iflPE~~d--Fi~~n~~esi~Lae~l~~k~m~~y~elar~~nIw 92 (295)
T KOG0807|consen 16 KRVAVAQMTS-SNDLTKNLATCKELISEAAQKGAKLIFLPEAFD--FIGQNPLESIELAEPLDGKFMEQYRELARSHNIW 92 (295)
T ss_pred ceeEEEeecc-chHHHHHHHHHHHHHHHHHHcCCCEEEcchhhh--hhcCCcccceecccccChHHHHHHHHHHHhcCee
Confidence 6899999975 689999999999999999999999999999862 222221111122221 233445555555579999
Q ss_pred EEEceee-eeC---CeeeEEEEEEe-CCEEEEEEecccCCC-----CCCcccccceeecCCCCcccccccchhhhhhccC
Q 009550 83 CSFGMPV-IKG---SERYNCQVLCL-NRKIIMIRPKLWLAN-----DGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQ 152 (532)
Q Consensus 83 iivG~~~-~~~---~~lyNsa~vi~-~G~il~~y~K~~L~~-----~g~f~E~~~f~~G~~~~~~~~~~lp~~~~~~~~~ 152 (532)
+-+|... +.+ .++||+-++|+ .|+|+..|+|.||++ -+.+.|+..-.||....
T Consensus 93 lSlgg~~~r~~~~~~k~~N~hl~id~~G~i~a~Y~KlHLFDVeipg~~~lkES~~t~pG~~i~----------------- 155 (295)
T KOG0807|consen 93 LSLGGHHERSDDGNQKLRNTHLLIDSKGEIRAEYQKLHLFDVEIPGGPRLKESNTTQPGTAIE----------------- 155 (295)
T ss_pred EEeccccCCCccccceeeeeEEEEcCCchHHHHHhhhceeEeecCCCcccccccCcCCCcccC-----------------
Confidence 9998654 332 68999999998 899999999999964 23344555555555431
Q ss_pred ceecccceeEEeCCceEEEEeeccCCCCChHHHHHHhCCCeEEEEcCCCCccccchHHHHHHHHHHHHHcCcEEEEEcCc
Q 009550 153 KSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQ 232 (532)
Q Consensus 153 ~~~p~g~~vf~~~~~riGv~IC~D~~~pe~~~~~la~~GadlIl~psas~~~~g~~~~~~~l~~~rA~e~~~~vv~aN~~ 232 (532)
..++++-+|+|..||||++||| ++..+...||+|+..|||.....|+ .+|+-++++||+|++|+||.+.++
T Consensus 156 -------~pv~tP~GklGlaICYDiRFpE-~sl~LR~~gA~iLtyPSAFT~~TG~-AHWEiLlRARAietQCYVvaaaQ~ 226 (295)
T KOG0807|consen 156 -------SPVDTPLGKLGLAICYDIRFPE-LSLKLRKMGAQILTYPSAFTIKTGE-AHWEILLRARAIETQCYVVAAAQV 226 (295)
T ss_pred -------CccCCcccccceeeeeeccCch-HHHHHHHcCCcEEeccchhhhcccH-HHHHHHHHHHHhhcceEEEehhhc
Confidence 2577888999999999999997 6778999999999999998777775 467789999999999999999999
Q ss_pred CCCCCceeeeccEEEE-eCCeEEEeeCCCCCCceeEEEEEeechhhhhhhccCCchhh
Q 009550 233 GCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQE 289 (532)
Q Consensus 233 G~~~~~~~f~G~S~I~-p~G~ila~~~~f~e~~~~iv~a~iDl~~~~~~R~~~~~~~~ 289 (532)
|.........|+|||+ |+|.++++++.-+ ..++++|+||++.++..|.+++-|.-
T Consensus 227 G~HneKR~SyGhSMiVDPWGtVva~~se~~--~~~l~~AdiDlslld~lr~~mP~~~h 282 (295)
T KOG0807|consen 227 GKHNEKRESYGHSMIVDPWGTVVARCSERT--GPGLILADIDLSLLDSLRTKMPLFNH 282 (295)
T ss_pred ccccchhhccCcceEEcchhhhheecCCCC--CCceEEEEccHHHHHHHHHhCchhhh
Confidence 9874445677999999 9999999998754 25899999999999999999988743
No 40
>COG0171 NadE NAD synthase [Coenzyme metabolism]
Probab=100.00 E-value=5.7e-35 Score=286.15 Aligned_cols=155 Identities=37% Similarity=0.467 Sum_probs=130.8
Q ss_pred HHHhcchhhHHHHHHHHhCCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHh
Q 009550 329 EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREF 408 (532)
Q Consensus 329 ~~~~~~~~~~L~~~l~~~~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (532)
++.+.+++.||++|+++++.+++|||||||+|||++++|+ ++|++.+. ..+
T Consensus 6 ~~~~~~~~~fl~~~l~~~~~k~~VlGiSGGiDSa~~~~La-------~~A~~~~~----------~~~------------ 56 (268)
T COG0171 6 EEEINRLVDFLRDYLKKAGFKGVVLGLSGGIDSALVLALA-------VRALGKGD----------SKE------------ 56 (268)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCeEEEcccChHHHHHHHHH-------HHHhcccc----------chh------------
Confidence 5778889999999999999999999999999999999998 57753200 011
Q ss_pred hcceEEEEecCCCCCCHHhHHHHHHHHHHhCCceEEEecHHHHHHHHHHhHhhhCCCCCcccCCCccccccchhhhhhhh
Q 009550 409 AKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARI 488 (532)
Q Consensus 409 ~~~~~~~~~~~~~~s~~~~~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~qaR~ 488 (532)
+++++.||+...++.+.++|..+++.+|+++.+++|+++++++...+..... ++..++++++|+|||+
T Consensus 57 ---~~~av~mP~~~~~~~~~~da~~~~~~lg~~~~~i~I~~~v~~~~~~~~~~~~---------~~~~~~~~~~NikaR~ 124 (268)
T COG0171 57 ---NVLAVRLPYGYTVQADEEDAQDLAEALGIDYKEINIKPAVDAFLKKLLKLFL---------GIYLEDLALGNIKARL 124 (268)
T ss_pred ---heeeEECCCCCccccCHHHHHHHHHHhCCceEEEecHHHHHHHHHhhhhhhc---------ccchhhHHHhhhhHHH
Confidence 5999999987658899999999999999999999999999998444333321 1135899999999999
Q ss_pred hHHHHHHHhhcCccccCCCCcEEEEcCCCccccccccccccCCC
Q 009550 489 RMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKVFDL 532 (532)
Q Consensus 489 R~~~l~~~a~~~~~~~~~~~~~lvlgT~n~sE~~~Gy~T~ygd~ 532 (532)
||.+||++||.+ | +||+||||+||.++||||||||.
T Consensus 125 Rm~~lY~~An~~-------~-~lVlGTgn~sE~~~Gy~TkyGDg 160 (268)
T COG0171 125 RMVILYAIANKL-------G-GLVLGTGNKSELALGYFTKYGDG 160 (268)
T ss_pred HHHHHHHHHhhc-------C-CEEEcCCcHHHHhcCceecccCc
Confidence 999999888654 6 59999999999999999999995
No 41
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=100.00 E-value=1.7e-34 Score=282.66 Aligned_cols=143 Identities=41% Similarity=0.521 Sum_probs=129.1
Q ss_pred hcchhhHHHHHHHHhCCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcc
Q 009550 332 AFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKR 411 (532)
Q Consensus 332 ~~~~~~~L~~~l~~~~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (532)
+++++.||++|++++|.++++||||||+|||++|+|+ ++| +|.+
T Consensus 2 ~~~l~~~L~~~~~~~g~~~vVvglSGGiDSav~A~La-------~~A--------------lg~~--------------- 45 (242)
T PF02540_consen 2 IEALVDFLRDYVKKSGAKGVVVGLSGGIDSAVVAALA-------VKA--------------LGPD--------------- 45 (242)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEEETSSHHHHHHHHHH-------HHH--------------HGGG---------------
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEcCCCCCHHHHHHHH-------HHH--------------hhhc---------------
Confidence 5678899999999999999999999999999999998 566 4544
Q ss_pred eEEEEecCCCCCCHHhHHHHHHHHHHhCCceEEEecHHHHHHHHHHhHhhhCCCCCcccCCCccccccchhhhhhhhhHH
Q 009550 412 IFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMV 491 (532)
Q Consensus 412 ~~~~~~~~~~~s~~~~~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~qaR~R~~ 491 (532)
++++|+||+..+++.+.++|.++|+.||++|.+|+|+++++++.+.+... ..+++.+|+|||+||.
T Consensus 46 ~v~~v~mp~~~~~~~~~~~A~~la~~lgi~~~~i~i~~~~~~~~~~~~~~--------------~~~~~~~Ni~aR~Rm~ 111 (242)
T PF02540_consen 46 NVLAVIMPSGFSSEEDIEDAKELAEKLGIEYIVIDIDPIFDAFLKSLEPA--------------DDDLARGNIQARIRMT 111 (242)
T ss_dssp EEEEEEEESSTSTHHHHHHHHHHHHHHTSEEEEEESHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH
T ss_pred cccccccccccCChHHHHHHHHHHHHhCCCeeccchHHHHHHHhhhhccc--------------hhhhhhhhHHHHHHHH
Confidence 69999999999999999999999999999999999999999999887764 2578999999999999
Q ss_pred HHHHHhhcCccccCCCCcEEEEcCCCccccccccccccCCC
Q 009550 492 LAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKVFDL 532 (532)
Q Consensus 492 ~l~~~a~~~~~~~~~~~~~lvlgT~n~sE~~~Gy~T~ygd~ 532 (532)
++|++||.. + +||+||||+||.++||||||||.
T Consensus 112 ~ly~~a~~~-------~-~lVlgT~N~sE~~~Gy~T~~GD~ 144 (242)
T PF02540_consen 112 TLYALANKY-------N-YLVLGTGNKSELLLGYFTKYGDG 144 (242)
T ss_dssp HHHHHHHHH-------T-EEEBE--CHHHHHHTCSHTTTTT
T ss_pred HHHHHhccc-------c-eEEecCCcHHHhhcCcccccCcc
Confidence 999998876 5 69999999999999999999995
No 42
>PRK00768 nadE NAD synthetase; Reviewed
Probab=100.00 E-value=4.8e-34 Score=280.03 Aligned_cols=158 Identities=27% Similarity=0.343 Sum_probs=126.2
Q ss_pred CcHHHHhcchhhHHHHHHHHhCCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCCh
Q 009550 326 SPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDS 405 (532)
Q Consensus 326 ~~~~~~~~~~~~~L~~~l~~~~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (532)
++. +....++.||++|++++|++++|||||||+|||++|+|++ +|++. .+..++
T Consensus 17 ~~~-~~~~~i~~~L~~~l~~~g~~g~VlGlSGGIDSav~a~L~~-------~A~~~-----------~~~~~~------- 70 (268)
T PRK00768 17 DPE-EEIRRRVDFLKDYLKKSGLKSLVLGISGGQDSTLAGRLAQ-------LAVEE-----------LRAETG------- 70 (268)
T ss_pred CHH-HHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHH-------HHHHH-----------hccccc-------
Confidence 444 4445577999999999999999999999999999999883 45321 121100
Q ss_pred HHhhcceEEEEecCCCCCCHHhHHHHHHHHHHhCC-ceEEEecHHHHHHHHHHhHhhhCCCCCcccCCCccccccchhhh
Q 009550 406 REFAKRIFYTVFMGSENSSQETRMLAKKLADEIGS-WHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNI 484 (532)
Q Consensus 406 ~~~~~~~~~~~~~~~~~s~~~~~~~a~~la~~lg~-~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~ 484 (532)
.....++++.||. +++.+.++|+.+|+.+|+ +|.+|||+++++++.+.+.. .+ .+.++++.+|+
T Consensus 71 --~~~~~~~~l~mP~--~~~~~~~da~~la~~lgi~~~~~i~I~~~~~~~~~~l~~-~~----------~~~~~~a~~Ni 135 (268)
T PRK00768 71 --DDDYQFIAVRLPY--GVQADEDDAQDALAFIQPDRVLTVNIKPAVDASVAALEA-AG----------IELSDFVKGNI 135 (268)
T ss_pred --CcceeEEEEECCC--CCcCCHHHHHHHHHhcCCCeeEEEECHHHHHHHHHHHhh-cC----------CCchhhHHHHH
Confidence 0001478999995 445688999999999999 79999999999999887764 11 12468999999
Q ss_pred hhhhhHHHHHHHhhcCccccCCCCcEEEEcCCCccccccccccccCCC
Q 009550 485 QARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKVFDL 532 (532)
Q Consensus 485 qaR~R~~~l~~~a~~~~~~~~~~~~~lvlgT~n~sE~~~Gy~T~ygd~ 532 (532)
|||+||++||++||.. | +||+||||+||.++||||||||.
T Consensus 136 qARlRm~~Ly~~An~~-------~-~lvlgT~N~sE~~~Gy~TkyGD~ 175 (268)
T PRK00768 136 KARERMIAQYAIAGAT-------G-GLVVGTDHAAEAVTGFFTKFGDG 175 (268)
T ss_pred HHHHHHHHHHHHHccC-------C-CEEEcCCcccHHHhCceeccCCc
Confidence 9999999999888765 6 59999999999999999999995
No 43
>KOG0806 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=99.97 E-value=1.6e-31 Score=261.04 Aligned_cols=255 Identities=17% Similarity=0.144 Sum_probs=207.0
Q ss_pred CceEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccc-ccchhh------hHHHHHHHHHHh
Q 009550 2 RLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHF-LELDTV------THAWECLKDLLL 74 (532)
Q Consensus 2 ~~~rVAlvQ~~~~~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~-~~~~~~------~~~~~~l~~la~ 74 (532)
..+++|++|......+...|++.....+++|+++|++||||||.+++||...+.+ ...+.. ......++.+++
T Consensus 12 ~~~~~a~vq~~~~l~~~~~Ni~~~~~~i~~aa~~g~~iIv~PE~~~~gy~~~~sf~py~E~i~~~~~~~ps~~~ls~va~ 91 (298)
T KOG0806|consen 12 PNATEALVSLEEALLLMNENIDILEKAVKEAAKQGAKIIVFPEDGLYGYNFTESFYPYLEDIPDPGCRDPSRQGLSEVAE 91 (298)
T ss_pred cccceeeeecccchhhhhhhHHHHHHHHHHHHhcCCeEEEChhhccccccccccccchhhhCCCcccCChhHHHhHHHHh
Confidence 4689999999998889999999999999999999999999999999999984322 211111 223445666665
Q ss_pred cccCCCeEEEEceeeeeC--CeeeEEEEEEe-CCEEEEEEecccCCCCC-----CcccccceeecCCCCcccccccchhh
Q 009550 75 GDWTDGILCSFGMPVIKG--SERYNCQVLCL-NRKIIMIRPKLWLANDG-----NYRELRWFTAWKQKDQLEDFQLPNEI 146 (532)
Q Consensus 75 ~~~~~~i~iivG~~~~~~--~~lyNsa~vi~-~G~il~~y~K~~L~~~g-----~f~E~~~f~~G~~~~~~~~~~lp~~~ 146 (532)
+++++++.|+++... +++||++.+++ +|+.++.|||.||++-. -|.|...|+||+...
T Consensus 92 ---~~~~~~i~g~i~~~~~~~k~yns~~~~~~~g~l~~~yrk~hlFD~d~~~~~ry~e~~~~~~g~~f~----------- 157 (298)
T KOG0806|consen 92 ---RLSCYIIGGSIEEEALGDKLYNSCADSSCPGDGLAKYRKNHLFDTDGPGVIRYRESHLLSPGDQFT----------- 157 (298)
T ss_pred ---hceEEEecCcchhhcccccccCcccccCCCcchhheeeeeEEeccCCccceeeeeeeccCCCcCCC-----------
Confidence 689999999887654 79999999999 99999999999998641 267888899888753
Q ss_pred hhhccCceecccceeEEeCCceEEEEeeccCCCCChHHHHHHhCCCeEEEEcCCCC---ccccchHHHHHHHHHHHHHcC
Q 009550 147 SVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSH---HQLRKLDYRIRAFISATHSRG 223 (532)
Q Consensus 147 ~~~~~~~~~p~g~~vf~~~~~riGv~IC~D~~~pe~~~~~la~~GadlIl~psas~---~~~g~~~~~~~l~~~rA~e~~ 223 (532)
++++..+|||+.||||+||++ +.+.++++||++|+.|++|. -..+. .+|.-+.++|+..|.
T Consensus 158 --------------~~~~~~gkfGi~IC~Di~F~d-~A~~~~~~g~~~ivyPtaw~~~~l~~~~-~hw~~~~~~~a~~n~ 221 (298)
T KOG0806|consen 158 --------------VVDTSYGKFGIFICFDIRFYD-PAMILVKDGADLIVYPTAWNNELLSAVP-LHWALLMRARANDNA 221 (298)
T ss_pred --------------cccCCCCceEEEEEecccccc-hHHHHHHcCCcEEEecchHhhhcccccc-hHHHHHHhCCcccce
Confidence 566777999999999999997 78899999999999999987 22232 345556788999999
Q ss_pred cEEEEEcCcCCCCCceeeec-cEEEE-eCCeEEEeeCCCCCCceeEEEEEeechhhhhhhccCCchhhh
Q 009550 224 GVYMYSNHQGCDGGRLYFDG-CSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQ 290 (532)
Q Consensus 224 ~~vv~aN~~G~~~~~~~f~G-~S~I~-p~G~ila~~~~f~e~~~~iv~a~iDl~~~~~~R~~~~~~~~~ 290 (532)
.+++.+|..+.....+...| +|.+. |.|++++....- .+++++++|++.+.+.|+..+.+++.
T Consensus 222 ~~v~~~s~~~~~s~~y~~~gshs~~~~p~gkvl~a~~~~----~e~~~a~~d~~~~~~~rq~~~~~~~r 286 (298)
T KOG0806|consen 222 ANVHAPSPARTGSGIYAPRGSHSIMVNPTGKVLAAAVEK----EEIIYADVDPSAIASRRQGLPVFRQR 286 (298)
T ss_pred eeeeccCcCcCCceeeecCCcceeecCCcceEeeeccCC----CccccccCCHHHHHHHhcccchhhcc
Confidence 99999998776545566667 99999 999999887543 34889999999999999888887653
No 44
>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production []. They all have distinct substrate specificity and include cyanide hydratases, aliphatic amidases, beta-alanine synthase, and a few other proteins with unknown molecular function. Sequence conservation over the entire length, as well as the similarity in the reactions catalyzed by the known enzymes in this family, points to a common catalytic mechanism. They have an invariant cysteine that is part of the catalytic site in nitrilases. Another highly conserved motif includes an invariant glutamic acid that might also be involved in catalysis [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0006807 nitrogen compound metabolic process; PDB: 2E2L_D 2E2K_D 2DYV_A 2DYU_B 3KLC_B 3IW3_A 3KI8_A 3IVZ_A 1EMS_A 2GGK_B ....
Probab=99.97 E-value=1.4e-30 Score=246.10 Aligned_cols=176 Identities=28% Similarity=0.318 Sum_probs=139.6
Q ss_pred EEEEEeccC--CCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCC----Ccccccc-hhhhHH-HHHHHHHHhcc
Q 009550 5 KVATCNLNN--WALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGC----EDHFLEL-DTVTHA-WECLKDLLLGD 76 (532)
Q Consensus 5 rVAlvQ~~~--~~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~----~d~~~~~-~~~~~~-~~~l~~la~~~ 76 (532)
|||++|+++ ...|.++|++++.+++++|+++|+|||||||++++||.. .+..... .+.... ...+..+.+.+
T Consensus 1 ~VA~~Q~~~~~~~~~~~~n~~~i~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a 80 (186)
T PF00795_consen 1 RVALVQLNIDQSWGDPEENLKKILSLIEEAARQGADLVVFPEMALPGYPNPGWCEDDFADLDEFAEPLDGPYLERLAELA 80 (186)
T ss_dssp EEEEEEB-B-SSTTHHHHHHHHHHHHHHHHHHTTESEEEEETTTTTCS-GGGSGHSSHHHHHHHHBHSTSHHHHHHHHHH
T ss_pred CEEEEECCccCccCCHHHHHHHHHHHHHHHHHCCCCEEEcCcchhcccccccccccccchhhhhccccccHHHHHHHHHH
Confidence 899999997 789999999999999999999999999999999999943 2211111 111110 23445555555
Q ss_pred cCCCeEEEEceeeeeCCeeeEEEEEEe-CCEEEEEEecccCCCCCCcc-cccceeecCCCCcccccccchhhhhhccCce
Q 009550 77 WTDGILCSFGMPVIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYR-ELRWFTAWKQKDQLEDFQLPNEISVALKQKS 154 (532)
Q Consensus 77 ~~~~i~iivG~~~~~~~~lyNsa~vi~-~G~il~~y~K~~L~~~g~f~-E~~~f~~G~~~~~~~~~~lp~~~~~~~~~~~ 154 (532)
+++++++++|++++.++++||++++|+ +|++++.|+|.||+++++|. |++||.+|....
T Consensus 81 ~~~~~~i~~G~~~~~~~~~~N~~~~~~~~g~~~~~y~K~~lvpf~~~~P~~~~~~~g~~~~------------------- 141 (186)
T PF00795_consen 81 KENGITIVAGIPERDDGGLYNSAVVIDPDGEILGRYRKIHLVPFGEYIPERRYFSPGGDPF------------------- 141 (186)
T ss_dssp HHHTSEEEEEEEEEETTEEEEEEEEEETTSEEEEEEEGSSTCSTTTTTTHHHHSBEESSES-------------------
T ss_pred HhcCCcccccccccccccccceeEEEEeeecccccccceeeeccccccccceeeeecccee-------------------
Confidence 578999999999999999999999999 79999999999999999999 999999984321
Q ss_pred ecccceeEEeCCceEEEEeeccCCCCChHHHHHHhCCCeEEEEcCC
Q 009550 155 VPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASG 200 (532)
Q Consensus 155 ~p~g~~vf~~~~~riGv~IC~D~~~pe~~~~~la~~GadlIl~psa 200 (532)
..|..++++++|+|+|++||||.|||+ ..+.++.+|||+|++|||
T Consensus 142 ~~~~~~~~~~~g~~ig~~ICyd~~fp~-~~~~~~~~ga~il~~~sa 186 (186)
T PF00795_consen 142 PVFETPVFDFGGGRIGVLICYDLRFPE-LVRELAKQGADILINPSA 186 (186)
T ss_dssp EEEEETETEETTEEEEEEEGGGGGSHH-HHHHHHHTTESEEEEEE-
T ss_pred eeeecceeeeccceEEEEEEcccCChH-HHHHHHHCCCCEEEeCCC
Confidence 011112466789999999999999996 678899999999999986
No 45
>PRK00302 lnt apolipoprotein N-acyltransferase; Reviewed
Probab=99.97 E-value=1.1e-29 Score=276.03 Aligned_cols=224 Identities=21% Similarity=0.135 Sum_probs=173.7
Q ss_pred ceEEEEEeccCCC------CCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhhHHHHHHHHHHhcc
Q 009550 3 LLKVATCNLNNWA------LDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGD 76 (532)
Q Consensus 3 ~~rVAlvQ~~~~~------~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~ 76 (532)
.+|||++|+|+.. ++.+.|++++.++++++ ++|+|||||||.++++|. .+. .....+.+.+++
T Consensus 219 ~~~ValvQ~ni~~~~k~~~~~~~~~l~~~~~~~~~~-~~~~dlvV~PE~a~p~~~-~~~------~~~~~~~l~~~a--- 287 (505)
T PRK00302 219 ALKVALVQGNIPQSLKWDPAGLEATLQKYLDLSRPA-LGPADLIIWPETAIPFLL-EDL------PQAFLKALDDLA--- 287 (505)
T ss_pred CcEEEEECCCCChhcccCHHHHHHHHHHHHHHHhcc-cCCCCEEEeCCccccccc-ccc------cHHHHHHHHHHH---
Confidence 5899999999866 56788999999998844 579999999999998763 111 111223344554
Q ss_pred cCCCeEEEEceeeeeC---C-eeeEEEEEEeCCEEEEEEecccCCCCCCccccc---------------ceeecCCCCcc
Q 009550 77 WTDGILCSFGMPVIKG---S-ERYNCQVLCLNRKIIMIRPKLWLANDGNYRELR---------------WFTAWKQKDQL 137 (532)
Q Consensus 77 ~~~~i~iivG~~~~~~---~-~lyNsa~vi~~G~il~~y~K~~L~~~g~f~E~~---------------~f~~G~~~~~~ 137 (532)
+++++.+++|.+++.+ + ++||+++++++|+++++|+|+||.+++||-+.+ .|+||+..
T Consensus 288 ~~~~~~il~G~~~~~~~~~~~~~yNsa~~i~~g~~~~~Y~K~~LvPfgE~~P~~~~~~~~~~~~~~~~~~~~~G~~~--- 364 (505)
T PRK00302 288 REKGSALITGAPRAENKQGRYDYYNSIYVLGPYGILNRYDKHHLVPFGEYVPLESLLRPLAPFFNLPMGDFSRGPYV--- 364 (505)
T ss_pred HhCCCEEEEecccccCCCCCCceeeEEEEECCCCCcCcccccccCCCcCCCChHHHHHHHHHhcCCCcCCCCCCCCC---
Confidence 4689999999886543 3 699999999989999999999999998764321 23444311
Q ss_pred cccccchhhhhhccCceecccceeEEeCCceEEEEeeccCCCCChHHHHHHhCCCeEEEEcCCCCcc-ccc-hHHHHHHH
Q 009550 138 EDFQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQ-LRK-LDYRIRAF 215 (532)
Q Consensus 138 ~~~~lp~~~~~~~~~~~~p~g~~vf~~~~~riGv~IC~D~~~pe~~~~~la~~GadlIl~psas~~~-~g~-~~~~~~l~ 215 (532)
..++++++.|+|++||||.+||+ ..|.++.+|||+|++|++..|. ... ..++..+.
T Consensus 365 ---------------------~~v~~~~~~~ig~~ICyE~~fpe-~~r~~~~~ga~~lv~~snd~Wf~~~~~~~qh~~~~ 422 (505)
T PRK00302 365 ---------------------QPPLLAKGLKLAPLICYEIIFPE-EVRANVRQGADLLLNISNDAWFGDSIGPYQHFQMA 422 (505)
T ss_pred ---------------------CCCcccCCceEEEEEeehhcChH-HHHhhccCCCCEEEEccchhhcCCCCchHHHHHHH
Confidence 13788899999999999999996 6788999999999999995442 111 34677888
Q ss_pred HHHHHHcCcEEEEEcCcCCCCCceeeeccEEEE-eCCeEEEeeCCCCCCceeEEEEEeech
Q 009550 216 ISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLD 275 (532)
Q Consensus 216 ~~rA~e~~~~vv~aN~~G~~~~~~~f~G~S~I~-p~G~ila~~~~f~e~~~~iv~a~iDl~ 275 (532)
+.||.||+++++.+|+.| .|.|+ |+|+++++.+.++ ++++++++|+.
T Consensus 423 ~~RAiEng~~vvra~n~G----------~Saiidp~G~i~~~~~~~~---~~~l~~~i~~~ 470 (505)
T PRK00302 423 RMRALELGRPLIRATNTG----------ITAVIDPLGRIIAQLPQFT---EGVLDGTVPPT 470 (505)
T ss_pred HHHHHHhCCceEEecCce----------eeEEECCCCCEeeecCCCc---eeEEEEEeccC
Confidence 999999999999998764 46777 9999999998775 46888888873
No 46
>TIGR00546 lnt apolipoprotein N-acyltransferase. This enzyme transfers the acyl group to lipoproteins in the lgt/lsp/lnt system which is found broadly in bacteria but not in archaea. This model represents one component of the "lipoprotein lgt/lsp/lnt system" genome property.
Probab=99.96 E-value=9.6e-30 Score=268.07 Aligned_cols=204 Identities=20% Similarity=0.132 Sum_probs=161.3
Q ss_pred ceEEEEEeccCCCC------CHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhhHHHHHHHHHHhcc
Q 009550 3 LLKVATCNLNNWAL------DFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGD 76 (532)
Q Consensus 3 ~~rVAlvQ~~~~~~------d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~ 76 (532)
.+|||++|+|+... +.+.|++++.+++++|.+ |+|||||||+++++|...+. +...+.+.++++
T Consensus 159 ~~~ValvQ~n~~~~~k~~~~~~~~~~~~~~~~~~~a~~-~~dlVv~PE~a~~~~~~~~~-------~~~~~~l~~~a~-- 228 (391)
T TIGR00546 159 TLNVALVQPNIPQDLKFDSEGLEAILEILTSLTKQAVE-KPDLVVWPETAFPFDLENSP-------QKLADRLKLLVL-- 228 (391)
T ss_pred cceEEEEcCCCCcccccChhhHHHHHHHHHHHHhccCC-CCCEEEcCccccccchhhCc-------HHHHHHHHHHHH--
Confidence 58999999998654 468899999999998876 89999999999999854221 112233444544
Q ss_pred cCCCeEEEEceeeeeCC---eeeEEEEEEe-CCEEEEEEecccCCCCCCcccc----------------cceeecCCCCc
Q 009550 77 WTDGILCSFGMPVIKGS---ERYNCQVLCL-NRKIIMIRPKLWLANDGNYREL----------------RWFTAWKQKDQ 136 (532)
Q Consensus 77 ~~~~i~iivG~~~~~~~---~lyNsa~vi~-~G~il~~y~K~~L~~~g~f~E~----------------~~f~~G~~~~~ 136 (532)
++++.+++|.++..++ ++||++++++ +|+++++|+|+||.+++||-+. .+|+||++.
T Consensus 229 -~~~~~ii~G~~~~~~~~~~~~yNsa~~~~~~G~~~~~Y~K~~LvPfgEyiP~~~~~~~~~~~~~~~~~~~~~~G~~~-- 305 (391)
T TIGR00546 229 -SKGIPILIGAPDAVPGGPYHYYNSAYLVDPGGEVVQRYDKVKLVPFGEYIPLGFLFKWLSKLFFLLSQEDFSRGPGP-- 305 (391)
T ss_pred -hCCCEEEEecccccCCCCCceeeEEEEECCCCCccccccceeccCCcCCCChHHHHHHHHHHhccCCccCCCCCCCC--
Confidence 6899999999876443 7999999998 7999999999999999886442 233444322
Q ss_pred ccccccchhhhhhccCceecccceeEEeCCceEEEEeeccCCCCChHHHHHHhCCCeEEEEcCCCCcccc--chHHHHHH
Q 009550 137 LEDFQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLR--KLDYRIRA 214 (532)
Q Consensus 137 ~~~~~lp~~~~~~~~~~~~p~g~~vf~~~~~riGv~IC~D~~~pe~~~~~la~~GadlIl~psas~~~~g--~~~~~~~l 214 (532)
.+|+++++|+|++||||.+||+ ..|.++++|||+|++||+++|... ...++..+
T Consensus 306 -----------------------~~~~~~~~~~g~~ICyE~~fp~-~~r~~~~~Ga~~lv~~snd~wf~~s~~~~qh~~~ 361 (391)
T TIGR00546 306 -----------------------QVLKLPGGKIAPLICYESIFPD-LVRASARQGAELLVNLTNDAWFGDSSGPWQHFAL 361 (391)
T ss_pred -----------------------CCCcCCCceeeeeEEeehhchH-HHHhhccCCCCEEEEecchhhcCCCCChHHHHHH
Confidence 3778889999999999999996 677899999999999999776322 23567788
Q ss_pred HHHHHHHcCcEEEEEcCcCCCCCceeeeccEEEE-eCCeE
Q 009550 215 FISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVV-VNGDM 253 (532)
Q Consensus 215 ~~~rA~e~~~~vv~aN~~G~~~~~~~f~G~S~I~-p~G~i 253 (532)
.+.||.||+++++.+|+.|. |.|+ |+|++
T Consensus 362 ~~~RAiEn~~~vvra~n~G~----------S~vidp~G~i 391 (391)
T TIGR00546 362 ARFRAIENGRPLVRATNTGI----------SAVIDPRGRT 391 (391)
T ss_pred HHHHHHHhCCcEEEecCCce----------eEEECCCCCC
Confidence 99999999999999998764 6777 99975
No 47
>PRK00876 nadE NAD synthetase; Reviewed
Probab=99.96 E-value=2.3e-29 Score=254.60 Aligned_cols=160 Identities=26% Similarity=0.322 Sum_probs=125.1
Q ss_pred HHHhcchhhHHHHHHHH-hCCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHH
Q 009550 329 EEIAFGPGCWLWDYLRR-SGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSRE 407 (532)
Q Consensus 329 ~~~~~~~~~~L~~~l~~-~~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (532)
++....+..+|++++++ .++++++++||||+|||++|+|+ .++ ++..
T Consensus 13 ~~~~e~i~~~l~~~V~~~~~~~~VvVgLSGGIDSSvvaaLa-------~~a--------------~g~~----------- 60 (326)
T PRK00876 13 AAEAERIRAAIREQVRGTLRRRGVVLGLSGGIDSSVTAALC-------VRA--------------LGKE----------- 60 (326)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCEEEEccCCHHHHHHHHHH-------HHh--------------hCCC-----------
Confidence 34556678899999999 89899999999999999999988 344 3322
Q ss_pred hhcceEEEEecCCCCCCHHhHHHHHHHHHHhCCceEEEecHHHHHHHHH----------HhHhh-hCCC-----CCcccC
Q 009550 408 FAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLS----------LFQTL-TGKR-----PCYKVD 471 (532)
Q Consensus 408 ~~~~~~~~~~~~~~~s~~~~~~~a~~la~~lg~~~~~i~i~~~~~~~~~----------~~~~~-~~~~-----~~~~~~ 471 (532)
++++++||+..++..+..+|+.+|+.+|++|++++|+++++++.. .+... .|.. +.+...
T Consensus 61 ----~v~av~~~~~~s~~~e~~~A~~lA~~LGi~~~~i~i~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~ 136 (326)
T PRK00876 61 ----RVYGLLMPERDSSPESLRLGREVAEHLGVEYVVEDITPALEALGCYRRRDEAIRRVVPEYGPGWKSKIVLPNLLDG 136 (326)
T ss_pred ----cEEEEEecCCCCChHHHHHHHHHHHHcCCCEEEEECchHHHHhhhhhhhHHHHHHHHHHHhccccccccccccccc
Confidence 589999998778889999999999999999999999999998752 22111 0000 000000
Q ss_pred -------------CCc----------cccccchhhhhhhhhHHHHHHHhhcCccccCCCCcEEEEcCCCccccccccccc
Q 009550 472 -------------GGS----------NVENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTK 528 (532)
Q Consensus 472 -------------~~~----------~~~~~~~~N~qaR~R~~~l~~~a~~~~~~~~~~~~~lvlgT~n~sE~~~Gy~T~ 528 (532)
+++ ...+++.+|+|||+||.+||++||.. | +||+||||+||.++|||||
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~aR~Rm~~ly~~A~~~-------~-~lVlgT~NksE~~~Gy~Tk 208 (326)
T PRK00876 137 DGLNVFSLVVQDPDGEVTRKRLPANAYLQIVAATNFKQRTRKMVEYYHADRL-------N-YAVAGTPNRLEYDQGFFVK 208 (326)
T ss_pred cccccccccccCccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhc-------C-CEEEcCCchhhHhhCCeee
Confidence 000 01278999999999999999888766 6 5999999999999999999
Q ss_pred cCCC
Q 009550 529 VFDL 532 (532)
Q Consensus 529 ygd~ 532 (532)
|||.
T Consensus 209 yGD~ 212 (326)
T PRK00876 209 NGDG 212 (326)
T ss_pred ecCc
Confidence 9994
No 48
>PTZ00323 NAD+ synthase; Provisional
Probab=99.96 E-value=3.7e-28 Score=242.70 Aligned_cols=162 Identities=22% Similarity=0.271 Sum_probs=132.7
Q ss_pred CCcHHHHhcchhhHHHHHHHHhCCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCC
Q 009550 325 HSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTD 404 (532)
Q Consensus 325 ~~~~~~~~~~~~~~L~~~l~~~~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (532)
|+|. ++......+|++||+++|.++++||||||+|||++|+|+ .++++. .
T Consensus 24 ~~~~-~~i~~~~~~L~~~l~~~g~~~vVVglSGGVDSav~aaLa-------~~alg~--------------~-------- 73 (294)
T PTZ00323 24 FNPA-AWIEKKCAKLNEYMRRCGLKGCVTSVSGGIDSAVVLALC-------ARAMRM--------------P-------- 73 (294)
T ss_pred CCHH-HHHHHHHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHH-------HHHhcc--------------c--------
Confidence 4554 566667899999999999999999999999999999998 456321 0
Q ss_pred hHHhhcceEEEEecCCCCCCHHhHHHHHHHHHHhCCceEEEecHHHHHHHHHHhHhhhCCCCCcccCCCccccccchhhh
Q 009550 405 SREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNI 484 (532)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~s~~~~~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~ 484 (532)
..+..++++++||+ .|++.+.++|+++|+.+|++|++|+|+++++++.+.++...+.. ..+++.+|+
T Consensus 74 --~~~~~~~~~v~~P~-~ss~~~~~~A~~la~~lGi~~~~idi~~l~~~~~~~i~~~~~~~----------~~~~~~~n~ 140 (294)
T PTZ00323 74 --NSPIQKNVGLCQPI-HSSAWALNRGRENIQACGATEVTVDQTEIHTQLSSLVEKAVGIK----------GGAFARGQL 140 (294)
T ss_pred --cCCceEEEEEECCC-CCCHHHHHHHHHHHHHhCCcEEEEECcHHHHHHHHHHhhhhccc----------chhhHHHhH
Confidence 00111689999996 68899999999999999999999999999999998888765422 356888999
Q ss_pred hhhhhHHHHHHHhhcCccccCCCCcEEEEcCCCcccc-ccccccccCCC
Q 009550 485 QARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEG-LRGYLTKVFDL 532 (532)
Q Consensus 485 qaR~R~~~l~~~a~~~~~~~~~~~~~lvlgT~n~sE~-~~Gy~T~ygd~ 532 (532)
|||+||+++|++||+. . ++..+ +||+||||+||. .+||+|||||.
T Consensus 141 ~ar~R~~~lY~la~~~-~-~~g~~-~lV~GT~N~sE~~~~Gy~t~~GDg 186 (294)
T PTZ00323 141 RSYMRTPVAFYVAQLL-S-QEGTP-AVVMGTGNFDEDGYLGYFCKAGDG 186 (294)
T ss_pred HHHHHhHHHHHHHHHH-h-hcCCC-eEEECCCCchhhhHhchHhhcCCC
Confidence 9999999999999865 2 22334 599999999995 69999999994
No 49
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=99.95 E-value=8.6e-28 Score=237.55 Aligned_cols=150 Identities=49% Similarity=0.656 Sum_probs=130.7
Q ss_pred HHHhcchhhHHHHHHHHhCCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHh
Q 009550 329 EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREF 408 (532)
Q Consensus 329 ~~~~~~~~~~L~~~l~~~~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (532)
++++.+++.||++|++++|.++++|+||||+||+++|+++ .++ .+..
T Consensus 4 ~~~~~~l~~~l~~~~~~~~~~~vvv~lSGGiDSs~~a~la-------~~~--------------~~~~------------ 50 (248)
T cd00553 4 EEIINALVLFLRDYLRKSGFKGVVLGLSGGIDSALVAALA-------VRA--------------LGRE------------ 50 (248)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEeCCCcHHHHHHHHHH-------HHH--------------hCcc------------
Confidence 6788999999999999999999999999999999999998 344 2212
Q ss_pred hcceEEEEecCCCCCCHHhHHHHHHHHHHhCCceEEEecHHHHHHHHHHhHhhhCCCCCcccCCCccccccchhhhhhhh
Q 009550 409 AKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARI 488 (532)
Q Consensus 409 ~~~~~~~~~~~~~~s~~~~~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~qaR~ 488 (532)
++++++||...++..+.++|+++|+.+|++|++++++++++.+...+....+ ....+.+.+|+|||+
T Consensus 51 ---~v~~~~~~~~~~~~~~~~~a~~~a~~lgi~~~~i~i~~~~~~~~~~~~~~~~----------~~~~~~~~~n~~ar~ 117 (248)
T cd00553 51 ---NVLALFMPSRYSSEETREDAKELAEALGIEHVNIDIDPAVEAFLALLGESGG----------SELEDLALGNIQARL 117 (248)
T ss_pred ---cEEEEECCCCCCCHHHHHHHHHHHHHhCCeEEEeccHHHHHHHHHHHhhhcc----------cchhhHHHHhhHHHH
Confidence 5999999998888899999999999999999999999999988777654221 134678999999999
Q ss_pred hHHHHHHHhhcCccccCCCCcEEEEcCCCccccccccccccCCC
Q 009550 489 RMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKVFDL 532 (532)
Q Consensus 489 R~~~l~~~a~~~~~~~~~~~~~lvlgT~n~sE~~~Gy~T~ygd~ 532 (532)
||.+||.+|+.. | ++|+||||++|.++||+|||||.
T Consensus 118 R~~~Ly~~A~~~-------~-~~vlgTgn~~E~~~G~~t~~gd~ 153 (248)
T cd00553 118 RMVILYALANKL-------G-GLVLGTGNKSELLLGYFTKYGDG 153 (248)
T ss_pred HHHHHHHHHHhc-------C-CEEEcCCcHhHHHhCCeeccCCc
Confidence 999999888765 6 59999999999999999999984
No 50
>PRK13980 NAD synthetase; Provisional
Probab=99.95 E-value=1.5e-27 Score=237.89 Aligned_cols=145 Identities=34% Similarity=0.410 Sum_probs=126.8
Q ss_pred HHHhcchhhHHHHHHHHhCCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHh
Q 009550 329 EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREF 408 (532)
Q Consensus 329 ~~~~~~~~~~L~~~l~~~~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (532)
+++.+.++.||++|++++|+++++||||||+||+++|+++ .++ ++..
T Consensus 11 ~~~~~~l~~~l~~~v~~~g~~~vvv~lSGGiDSsv~a~l~-------~~~--------------~~~~------------ 57 (265)
T PRK13980 11 EKVREIIVDFIREEVEKAGAKGVVLGLSGGIDSAVVAYLA-------VKA--------------LGKE------------ 57 (265)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHH-------HHH--------------hCcc------------
Confidence 5778889999999999999999999999999999999988 344 3322
Q ss_pred hcceEEEEecCCCCCCHHhHHHHHHHHHHhCCceEEEecHHHHHHHHHHhHhhhCCCCCcccCCCccccccchhhhhhhh
Q 009550 409 AKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARI 488 (532)
Q Consensus 409 ~~~~~~~~~~~~~~s~~~~~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~qaR~ 488 (532)
++++++||...+++.+.++|+.+|+.+|++|++++|+++++++...+.. ..+++.+|+|+|+
T Consensus 58 ---~v~av~~~~~~~~~~~~~~a~~la~~lgi~~~~i~i~~~~~~~~~~~~~---------------~~~~~~~n~~aR~ 119 (265)
T PRK13980 58 ---NVLALLMPSSVSPPEDLEDAELVAEDLGIEYKVIEITPIVDAFFSAIPD---------------ADRLRVGNIMART 119 (265)
T ss_pred ---ceEEEEeeCCCCCHHHHHHHHHHHHHhCCCeEEEECHHHHHHHHHHccc---------------ccchHHHHHHHHH
Confidence 4899999988888899999999999999999999999999887654431 2467889999999
Q ss_pred hHHHHHHHhhcCccccCCCCcEEEEcCCCccccccccccccCCC
Q 009550 489 RMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKVFDL 532 (532)
Q Consensus 489 R~~~l~~~a~~~~~~~~~~~~~lvlgT~n~sE~~~Gy~T~ygd~ 532 (532)
||.+||.+|+.. | ++|+||||+||.++||||+|||.
T Consensus 120 R~~~L~~~A~~~-------g-~lvlgTgn~sE~~~G~~t~~gD~ 155 (265)
T PRK13980 120 RMVLLYDYANRE-------N-RLVLGTGNKSELLLGYFTKYGDG 155 (265)
T ss_pred HHHHHHHHHhhc-------C-CEEEcCCCHhHHHhCCccCCCCc
Confidence 999999888765 6 59999999999999999999984
No 51
>KOG0805 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=99.95 E-value=1.9e-26 Score=215.21 Aligned_cols=246 Identities=17% Similarity=0.155 Sum_probs=198.8
Q ss_pred CCceEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccc----------cchhhhH---HH-
Q 009550 1 MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFL----------ELDTVTH---AW- 66 (532)
Q Consensus 1 m~~~rVAlvQ~~~~~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~----------~~~~~~~---~~- 66 (532)
|.+.||+++|.....+|....++++++++.+|++.|++||||||.++.||+-+..|. +.+|... +.
T Consensus 15 ~s~~~v~ivQ~~t~~~dtpaTL~K~~~~~~Eaa~~Ga~LV~fPEAfiGGYPrg~~Fg~~~G~r~~eGR~ef~kY~a~AIe 94 (337)
T KOG0805|consen 15 SSIVRVTIVQASTVYNDTPATLDKAEKYIVEAASKGAELVLFPEAFIGGYPRGFRFGLAVGVRNEEGRDEFRKYHASAIE 94 (337)
T ss_pred ccceEEEEEEcccCCCCCHHHHHHHHHHHHHHhcCCceEEEeehHhccCCCCcceeeEEEeecchhhhHHHHHHHHHhhc
Confidence 567899999999999999999999999999999999999999999999998765442 1222221 11
Q ss_pred ---HHHHHHHhcccCCCeEEEEceeeeeCCeeeEEEEEEe-CCEEEEEEecccCCCCCCcccccceeecCCCCccccccc
Q 009550 67 ---ECLKDLLLGDWTDGILCSFGMPVIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQL 142 (532)
Q Consensus 67 ---~~l~~la~~~~~~~i~iivG~~~~~~~~lyNsa~vi~-~G~il~~y~K~~L~~~g~f~E~~~f~~G~~~~~~~~~~l 142 (532)
+.+++|+..++++++++++|.+++++-.+|-++++++ .|..+|+|||. +|+. .|.-.+-.|+..
T Consensus 95 v~gpEv~~l~~la~~~~v~lv~G~iEreg~TLYCt~~f~~p~g~~lGKHRKl-mPTa---lERciWGqGDGS-------- 162 (337)
T KOG0805|consen 95 VPGPEVERLAELAKKNNVYLVMGAIEREGYTLYCTVLFFSPQGQFLGKHRKL-MPTA---LERCIWGQGDGS-------- 162 (337)
T ss_pred CCChHHHHHHHHhhcCCeEEEEEEEeccccEEEEEEEEECCCcccccccccc-ccch---hhheeeccCCCc--------
Confidence 2456666666789999999999999999999999998 79999999998 5654 355445555543
Q ss_pred chhhhhhccCceecccceeEEeCCceEEEEeeccCCCCChHHHHHHhCCCeEEEEcCCCCccccchHHHHHHHHHHHHHc
Q 009550 143 PNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSR 222 (532)
Q Consensus 143 p~~~~~~~~~~~~p~g~~vf~~~~~riGv~IC~D~~~pe~~~~~la~~GadlIl~psas~~~~g~~~~~~~l~~~rA~e~ 222 (532)
++| ||++.-+|||-+|||+.+.| ..+-.|..+|.+|.+.|++.. ...|..-++..|.|-
T Consensus 163 -----------TiP----V~dT~iGKIG~AICWEN~MP-l~R~alY~KgieIycAPT~D~-----r~~w~~sM~~IAlEG 221 (337)
T KOG0805|consen 163 -----------TIP----VYDTPIGKIGAAICWENRMP-LYRTALYAKGIEIYCAPTADG-----RKEWQSSMLHIALEG 221 (337)
T ss_pred -----------ccc----eeecccchhceeeecccccH-HHHHHHHhcCcEEEeccCCCC-----cHHHHHhhhheeecC
Confidence 344 99999999999999999999 456678889999999999853 246777888999999
Q ss_pred CcEEEEEcCcCCC-------------------CCceeeeccEEEE-eCCeEEEeeCCCCCCceeEEEEEeechhhhhhhc
Q 009550 223 GGVYMYSNHQGCD-------------------GGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRG 282 (532)
Q Consensus 223 ~~~vv~aN~~G~~-------------------~~~~~f~G~S~I~-p~G~ila~~~~f~e~~~~iv~a~iDl~~~~~~R~ 282 (532)
+|+++.+++.-.. .+..+..|+|.|+ |-|++++. |.|+. +++++|++|+..+.++|.
T Consensus 222 ~cFvlSA~QF~k~~d~p~~peyl~~~~~~~k~pD~vv~~GGSviI~PlG~Vlag-P~~~~--EgL~tadldl~dIA~ak~ 298 (337)
T KOG0805|consen 222 GCFVLSACQFCKRKDFPDHPDYLFTDWYDDKEPDSVVSQGGSVIISPLGQVLAG-PNFES--EGLITADLDLGDIARAKL 298 (337)
T ss_pred ceEEEEhhhhcccccCCCCchhhcccchhccCCCcceecCCcEEEccccceecC-CCcCc--cceEEEeccchhhhhhcc
Confidence 9999999985221 1456778999999 99999986 56653 589999999999987664
No 52
>KOG0808 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=99.93 E-value=6.5e-25 Score=206.21 Aligned_cols=250 Identities=16% Similarity=0.149 Sum_probs=191.7
Q ss_pred CceEEEEEeccCCC-------CCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCC--Ccccccchhhh-----HHHH
Q 009550 2 RLLKVATCNLNNWA-------LDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGC--EDHFLELDTVT-----HAWE 67 (532)
Q Consensus 2 ~~~rVAlvQ~~~~~-------~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~--~d~~~~~~~~~-----~~~~ 67 (532)
|.+||+++|-.+.. ....+-.+|+...|+.|+..|+.+++|.|.|...|.. .......+|.+ ....
T Consensus 72 r~vrvgliqn~i~lpttapv~eq~~aih~r~kaiieaaa~agvniiclqeawtmpfafctrerlpwtefaesv~~gptt~ 151 (387)
T KOG0808|consen 72 RVVRVGLIQNSIALPTTAPVSEQTRAIHDRLKAIIEAAAVAGVNIICLQEAWTMPFAFCTRERLPWTEFAESVDTGPTTK 151 (387)
T ss_pred cEEEEeeecccccCCCCCcHHHHHHHHHHHHHHHHHHHHhcCccEEEeehhhcCchhhhccccCchhhhccccccCchHH
Confidence 46899999976421 2345567788888999999999999999998776542 22222233333 2456
Q ss_pred HHHHHHhcccCCCeEEEEceeee---eCCeeeEEEEEEe-CCEEEEEEecccCCCCCCcccccceeecCCCCcccccccc
Q 009550 68 CLKDLLLGDWTDGILCSFGMPVI---KGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLP 143 (532)
Q Consensus 68 ~l~~la~~~~~~~i~iivG~~~~---~~~~lyNsa~vi~-~G~il~~y~K~~L~~~g~f~E~~~f~~G~~~~~~~~~~lp 143 (532)
.+++||+ ++++.|+-...++ +++.++|++++|. +|.|+|++||.|+|..|.|.|+.||..|+-.
T Consensus 152 flqklak---khdmvivspilerd~ehgdvlwntavvisn~g~vigk~rknhiprvgdfnestyymeg~lg--------- 219 (387)
T KOG0808|consen 152 FLQKLAK---KHDMVIVSPILERDIEHGDVLWNTAVVISNNGNVIGKHRKNHIPRVGDFNESTYYMEGDLG--------- 219 (387)
T ss_pred HHHHHHh---hCCeEEEehhhhcccccCceeeeeeEEEccCCceecccccccCCcccccCcceeEeecCCC---------
Confidence 7888876 6898777655555 3568999999998 8999999999999999999999999888753
Q ss_pred hhhhhhccCceecccceeEEeCCceEEEEeeccCCCCChHHHHHHhCCCeEEEEcCCCCccccchHHHHHHHHHHHHHcC
Q 009550 144 NEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRG 223 (532)
Q Consensus 144 ~~~~~~~~~~~~p~g~~vf~~~~~riGv~IC~D~~~pe~~~~~la~~GadlIl~psas~~~~g~~~~~~~l~~~rA~e~~ 223 (532)
.+||++..+|||+.|||-..+|.. +..++++||+||+|||+.--.+.. ..|---.+..|+.|.
T Consensus 220 ---------------hpvfet~fgriavnicygrhhpln-wlmy~lngaeiifnpsatvgalse-plwpiearnaaianh 282 (387)
T KOG0808|consen 220 ---------------HPVFETVFGRIAVNICYGRHHPLN-WLMYGLNGAEIIFNPSATVGALSE-PLWPIEARNAAIANH 282 (387)
T ss_pred ---------------CceeeeecceEEEEeeccCCCchh-hhhhhccCceEEECCccccccccC-ccCchhhhhhhhhhc
Confidence 259999999999999999999964 568899999999999985322211 112223567888999
Q ss_pred cEEEEEcCcCCC--------C-------CceeeeccEEEE-eCCeEEEeeCCCCCCceeEEEEEeechhhhhhhcc
Q 009550 224 GVYMYSNHQGCD--------G-------GRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGS 283 (532)
Q Consensus 224 ~~vv~aN~~G~~--------~-------~~~~f~G~S~I~-p~G~ila~~~~f~e~~~~iv~a~iDl~~~~~~R~~ 283 (532)
++.+..|++|.+ + +-..|.|+|.+. ||+..--..++.. ++++++++||..+++...+
T Consensus 283 ~ft~~inrvgtevfpneftsgdgkpah~dfghfygssy~aapd~srtp~lsr~r---dgllia~ldlnlcrq~kd~ 355 (387)
T KOG0808|consen 283 YFTGSINRVGTEVFPNEFTSGDGKPAHNDFGHFYGSSYFAAPDASRTPSLSRYR---DGLLIADLDLNLCRQYKDK 355 (387)
T ss_pred eEEEeecccccccCCCcccCCCCCcccccccccccceeeecCCCCCCccccccc---cceEEeecchHHHHHhhhh
Confidence 999999999975 1 124689999999 9998766666554 4899999999999877654
No 53
>PRK12291 apolipoprotein N-acyltransferase; Reviewed
Probab=99.93 E-value=5.2e-25 Score=232.42 Aligned_cols=188 Identities=12% Similarity=0.020 Sum_probs=145.6
Q ss_pred eEEEEEeccCCCC------CHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhhHHHHHHHHHHhccc
Q 009550 4 LKVATCNLNNWAL------DFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDW 77 (532)
Q Consensus 4 ~rVAlvQ~~~~~~------d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~ 77 (532)
.+|+++|+|.... ..+.|++++.+++++|.+.++|||||||++++.|...+ .+.++++++.+
T Consensus 195 ~~V~lVQ~ni~q~~Kw~~~~~~~~l~~~~~l~~~a~~~~~dLVVwPEta~p~~~~~~-----------~~~~~~l~~~~- 262 (418)
T PRK12291 195 VNIELVNTNIPQDLKWDKENLKSIINENLKEIDKAIDEKKDLIVLPETAFPLALNNS-----------PILLDKLKELS- 262 (418)
T ss_pred CEEEEEeCCCCcccccChhhHHHHHHHHHHHHHHHhccCCCEEEeCCcccccchhhC-----------HHHHHHHHHhc-
Confidence 4899999997543 23678999999999998889999999999987653221 12344555442
Q ss_pred CCCeEEEEceeeeeCCeeeEEEEEEeCCEEEEEEecccCCCCCCccc----------------ccceeecCCCCcccccc
Q 009550 78 TDGILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRE----------------LRWFTAWKQKDQLEDFQ 141 (532)
Q Consensus 78 ~~~i~iivG~~~~~~~~lyNsa~vi~~G~il~~y~K~~L~~~g~f~E----------------~~~f~~G~~~~~~~~~~ 141 (532)
.++.+++|.+..+++++|||++++++|+ ++.|+|+||+++|||-+ ...|+||+..
T Consensus 263 -~~~~ii~G~~~~~~~~~yNS~~vi~~G~-~~~Y~K~hLVPFGEyiP~~~~l~~~~~~~~~~~~~~f~~G~~~------- 333 (418)
T PRK12291 263 -HKITIITGALRVEDGHIYNSTYIFSKGN-VQIADKVILVPFGEEIPLPKFFKKPINKLFFGGASDFSKASKF------- 333 (418)
T ss_pred -cCCcEEEeeeeccCCceEEEEEEECCCC-cceecccCCCCCcccCccHHHHHhhhHHHhccCcccCCCCCCC-------
Confidence 4788999998776678999999998887 78999999999987543 2234444322
Q ss_pred cchhhhhhccCceecccceeEEeCCceEEEEeeccCCCCChHHHHHHhCCCeEEEEcCCCCccccc--hHHHHHHHHHHH
Q 009550 142 LPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRK--LDYRIRAFISAT 219 (532)
Q Consensus 142 lp~~~~~~~~~~~~p~g~~vf~~~~~riGv~IC~D~~~pe~~~~~la~~GadlIl~psas~~~~g~--~~~~~~l~~~rA 219 (532)
.++++++.|+|++||||.+||+. .+ +|||+|+++|++.|.-.. ..++..+++.||
T Consensus 334 ------------------~~~~~~g~~ig~lICYE~~Fpel-~r----~ga~~Lv~iSNdaWfg~s~~p~~~~~~~r~RA 390 (418)
T PRK12291 334 ------------------SDFTLDGVKFRNAICYEATSEEL-YE----GNPKIVIAISNNAWFVPSIEPTLQKLLLKYYA 390 (418)
T ss_pred ------------------cceeeCCeEEEEEEeeeecchHh-hc----cCCCEEEEecccccCCCChhHHHHHHHHHHHH
Confidence 37888999999999999999963 32 899999999997773222 236667788899
Q ss_pred HHcCcEEEEEcCcCCC
Q 009550 220 HSRGGVYMYSNHQGCD 235 (532)
Q Consensus 220 ~e~~~~vv~aN~~G~~ 235 (532)
+|+++|++.+.+.|.+
T Consensus 391 iE~g~pvvratNtGiS 406 (418)
T PRK12291 391 RKYGKTIYHSANGSPS 406 (418)
T ss_pred HHhCCcEEEEcCCcee
Confidence 9999999999988875
No 54
>TIGR00552 nadE NAD+ synthetase. NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity.
Probab=99.88 E-value=4.4e-22 Score=197.01 Aligned_cols=147 Identities=30% Similarity=0.374 Sum_probs=115.4
Q ss_pred HhcchhhHHHHHHHHhCCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhc
Q 009550 331 IAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAK 410 (532)
Q Consensus 331 ~~~~~~~~L~~~l~~~~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (532)
....+..+|++++++.+.++++||||||+||+++|+|+ .++ .+..
T Consensus 5 ~~~~l~~~l~~~v~~~~~~~V~vglSGGiDSsvla~l~-------~~~--------------~~~~-------------- 49 (250)
T TIGR00552 5 YVEEIEDFLRGYVQKSGAKGVVLGLSGGIDSAVVAALC-------VEA--------------LGEQ-------------- 49 (250)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEECCCcHHHHHHHHHH-------HHh--------------hCCc--------------
Confidence 34446679999999999999999999999999998887 233 2211
Q ss_pred ceEEEEecCCCCCCHHhHHHHHHHHHHhCCceEEEecHHHHHHHHHHhHhhhCCCCCcccCCCccccccchhhhhhhhhH
Q 009550 411 RIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRM 490 (532)
Q Consensus 411 ~~~~~~~~~~~~s~~~~~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~qaR~R~ 490 (532)
.+...++++..++..+.++|+++|+.+|++|+++++++.+.++....... .+ +.+.++.+|+++|+||
T Consensus 50 -~~~~~~~~~~~~~~~e~~~a~~~a~~lgi~~~~i~i~~~~~~~~~~~~~~---~~--------~~~~~~~~n~car~R~ 117 (250)
T TIGR00552 50 -NHALLLPHSVQTPEQDVQDALALAEPLGINYKNIDIAPIAASFQAQTETG---DE--------LSDFLAKGNLKARLRM 117 (250)
T ss_pred -eEEEEECCccCCCHHHHHHHHHHHHHhCCeEEEEcchHHHHHHHHHhccc---cC--------CchHHHHHHHHHHHHH
Confidence 24444555556678899999999999999999999999888664432211 11 1234567899999999
Q ss_pred HHHHHHhhcCccccCCCCcEEEEcCCCccccccccccccCCC
Q 009550 491 VLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKVFDL 532 (532)
Q Consensus 491 ~~l~~~a~~~~~~~~~~~~~lvlgT~n~sE~~~Gy~T~ygd~ 532 (532)
.+||.+|+.+ | +++|+|||++|.++||+|+|||.
T Consensus 118 ~~L~~~A~~~-------g-~~~laTgh~~E~~~G~~t~~gd~ 151 (250)
T TIGR00552 118 AALYAIANKH-------N-LLVLGTGNKSELMLGYFTKYGDG 151 (250)
T ss_pred HHHHHHHHhc-------C-CEEEcCCcHHHHhhCCeecccCC
Confidence 9999888765 6 59999999999999999999984
No 55
>COG0815 Lnt Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.85 E-value=2.6e-20 Score=200.43 Aligned_cols=228 Identities=18% Similarity=0.102 Sum_probs=150.8
Q ss_pred ceEEEEEeccCCC---CCHHHHHHHHHHHH---HHHH--HCCCeEEEcCCCCcCCCCCCcccccchhhhHHHHHHHHHHh
Q 009550 3 LLKVATCNLNNWA---LDFDCNLKNIKESI---GRAK--EAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLL 74 (532)
Q Consensus 3 ~~rVAlvQ~~~~~---~d~~~N~~~i~~~i---~~A~--~~gadLvVfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~ 74 (532)
.++|+++|.|+.. .|.+.-.+.+...+ ..+. .+++|+||+||.+++ +...+. .+.+.++.+
T Consensus 227 ~~~V~lvQ~nI~q~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~dlVIwPEtA~p-~~~~~~----------~~~~~~~~~ 295 (518)
T COG0815 227 TLTVALVQGNIPQDLKWDADALARLIAGYLEEEFLAAVDKQKPDLVVWPETALP-FDLTRH----------PDALARLAE 295 (518)
T ss_pred ceEEEEecCCCcccccCCHHHHHHHHHhhhhccccccccCCCCCEEEccccccc-cchhhc----------chHHHHHHH
Confidence 4899999999752 34333222222222 2222 378999999999987 222111 111223333
Q ss_pred cccCCCeEEEEceeee--eCCe--eeEEEEEEeC-CEEEEEEecccCCCCCCcccccceeecCCCCcccccccchhhhhh
Q 009550 75 GDWTDGILCSFGMPVI--KGSE--RYNCQVLCLN-RKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVA 149 (532)
Q Consensus 75 ~~~~~~i~iivG~~~~--~~~~--lyNsa~vi~~-G~il~~y~K~~L~~~g~f~E~~~f~~G~~~~~~~~~~lp~~~~~~ 149 (532)
...+.++.+++|.... .+++ +|||++++++ |+++.+|+|.||.|+|||-+-..+-+.-.. .+.++ ..++
T Consensus 296 ~~~~~~~~~iiG~~~~~~~~~~~~yyNSv~~~~~~~~~~~~ydK~~LVPFGEYiP~~~~l~~~~~----~~~~~--~~~f 369 (518)
T COG0815 296 ALQRVGAPLLIGTDVDGPAPGGGIYYNSVLVLDPGGEGVYRYDKVHLVPFGEYIPFPELLRPLYF----FLNLP--MSDF 369 (518)
T ss_pred HHHhcCCcEEEeccccccCCCCcceeeEEEEecCCCCccccccceeeeCCccccchHHHHHHHhh----hhccc--cccc
Confidence 3335678899994332 2344 8999999994 599999999999999988664332211100 00000 0011
Q ss_pred ccCceecccceeEEeC-CceEEEEeeccCCCCChHHHHHHhCCCeEEEEcCCCCcccc--chHHHHHHHHHHHHHcCcEE
Q 009550 150 LKQKSVPFGYGFIQFL-DTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLR--KLDYRIRAFISATHSRGGVY 226 (532)
Q Consensus 150 ~~~~~~p~g~~vf~~~-~~riGv~IC~D~~~pe~~~~~la~~GadlIl~psas~~~~g--~~~~~~~l~~~rA~e~~~~v 226 (532)
..|.. ..++.+. +.|+++.||||.-||+ ..|....+|||+|+|+|+..|.-. ...|+..+.+.||.|++.|+
T Consensus 370 ~~G~~----~~v~~~~~~~~~~~~ICYE~~F~~-~~r~~~~qga~~Lin~SNDAWf~~s~~p~QH~~~a~~RAiE~grp~ 444 (518)
T COG0815 370 SRGPG----PQVLLLAGGPKIAPLICYEAIFPE-LVRASARQGAELLLNLSNDAWFGGSWGPYQHFQQARVRAVELGRPL 444 (518)
T ss_pred cCCCC----CcceecCCCceeeceeeehhhchH-HHHHhhcCCCcEEEEcccccccCCCcchHHHHHHHHHHHHhcCCcE
Confidence 11111 1355554 4679999999999996 577889999999999999776322 12466778899999999999
Q ss_pred EEEcCcCCCCCceeeeccEEEE-eCCeEEEeeCCCCC
Q 009550 227 MYSNHQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSL 262 (532)
Q Consensus 227 v~aN~~G~~~~~~~f~G~S~I~-p~G~ila~~~~f~e 262 (532)
+.+.+.|.+ .|+ |+|+++++.+.|+.
T Consensus 445 iRAtNtGiS----------avIdp~Gri~~~l~~~~~ 471 (518)
T COG0815 445 VRATNTGIS----------AVIDPRGRILAQLPYFTR 471 (518)
T ss_pred EEEcCCcce----------EEECCCCCEEeecCCCCc
Confidence 999988875 555 99999999999864
No 56
>PRK13825 conjugal transfer protein TraB; Provisional
Probab=99.84 E-value=3.7e-20 Score=192.97 Aligned_cols=172 Identities=12% Similarity=0.024 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhhHHHHHHHHHHhcccCCCeEEEEceeeeeCCeeeEEEE
Q 009550 21 NLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCSFGMPVIKGSERYNCQV 100 (532)
Q Consensus 21 N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~iivG~~~~~~~~lyNsa~ 100 (532)
+.+++.+.+++|.++|+|+|||||+++++|..... .. +.+.+ +++++.+++|..+++++++||+++
T Consensus 207 ~~~~~~~~v~~A~~~g~dlIVlPEta~~~~~~~~~----~~-------~~~~l---~~~~i~II~G~~~~~~~~~yNsa~ 272 (388)
T PRK13825 207 RRRELIATVRAAAAAGARVVVLPESALGFWTPTTE----RL-------WRESL---RGSDVTVIAGAAVVDPGGYDNVLV 272 (388)
T ss_pred HHHHHHHHHHhhcccCCCEEEccCccccccccccc----HH-------HHHHH---HhCCCeEEEEeeecCCCCceEEEE
Confidence 33456677778888899999999999999864211 10 12222 357899999998877788999999
Q ss_pred EEeCCEEEEEEecccCCCCCCcc-------cccceeecCCCCcccccccchhhhhhccCceecccceeEEeCCceEEEEe
Q 009550 101 LCLNRKIIMIRPKLWLANDGNYR-------ELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEI 173 (532)
Q Consensus 101 vi~~G~il~~y~K~~L~~~g~f~-------E~~~f~~G~~~~~~~~~~lp~~~~~~~~~~~~p~g~~vf~~~~~riGv~I 173 (532)
++++++....|+|+||.+++||. |..+|.+|.. ++.+|++++.|+|++|
T Consensus 273 v~~~~G~~~~Y~K~~LvPfgE~~P~~~~~~e~~~~~~g~~------------------------~~~vf~l~g~rvg~lI 328 (388)
T PRK13825 273 AISAGGGRILYRERMPVPVSMWQPWRPWTGQGGGARAHFF------------------------ANPVVEIDGRRAAPLI 328 (388)
T ss_pred EEeCCCCeeeEeeeeCcCccccCchHHhhccccCCCCCCC------------------------CCCceeeCCeEEEEEE
Confidence 99954345599999998887654 2223332211 2247889999999999
Q ss_pred eccCCCCChHHHHHHhCCCeEEEEcCCCCccccch--HHHHHHHHHHHHHcCcEEEEEcC
Q 009550 174 CEELFTPIPPHADLALNGVEVFMNASGSHHQLRKL--DYRIRAFISATHSRGGVYMYSNH 231 (532)
Q Consensus 174 C~D~~~pe~~~~~la~~GadlIl~psas~~~~g~~--~~~~~l~~~rA~e~~~~vv~aN~ 231 (532)
|||.+|+.+.. ....+|+|+|++|++..|..+.. .++..+.+.||+|++.|++.+.+
T Consensus 329 CYE~~F~~pel-~~~~~GadlLv~~SNd~Wf~~s~~p~~q~~~~~~rA~e~g~plvrA~N 387 (388)
T PRK13825 329 CYEQLLVWPVL-QSMLHSPDVIVAVGNGWWTKGTSIVAIQRASAEAWARLFGVPLVRAFN 387 (388)
T ss_pred eeeecCcHHHH-HhhccCCCEEEEecCchhcCCCcHHHHHHHHHHHHHHHhCCCEEEecC
Confidence 99999853222 33379999999999977654432 35678899999999999998754
No 57
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=98.99 E-value=1.3e-09 Score=112.21 Aligned_cols=115 Identities=23% Similarity=0.230 Sum_probs=68.0
Q ss_pred CeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCC-----
Q 009550 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENS----- 423 (532)
Q Consensus 349 ~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s----- 423 (532)
+++++|||||||||++|+|+ .+ .|+ .|++++|.....
T Consensus 1 ~kV~vamSGGVDSsvaA~LL-------k~---------------~G~----------------~V~Gv~m~~~~~~~~~~ 42 (356)
T PF03054_consen 1 KKVLVAMSGGVDSSVAAALL-------KE---------------QGY----------------DVIGVTMRNWDEEDESG 42 (356)
T ss_dssp -EEEEE--SSHHHHHHHHHH-------HH---------------CT-----------------EEEEEEEE-SS-SSSHH
T ss_pred CeEEEEccCCHHHHHHHHHH-------Hh---------------hcc----------------cceEEEEEEeccccccC
Confidence 47999999999999988887 22 465 499999986544
Q ss_pred ----CHHhHHHHHHHHHHhCCceEEEecHHHHHH-HHHHhHhhh--CCCCCcccCCCccccccchhhhhhhhhHHHHHHH
Q 009550 424 ----SQETRMLAKKLADEIGSWHLDVSIDTVVSA-FLSLFQTLT--GKRPCYKVDGGSNVENLGLQNIQARIRMVLAFML 496 (532)
Q Consensus 424 ----~~~~~~~a~~la~~lg~~~~~i~i~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~N~qaR~R~~~l~~~ 496 (532)
++.+.++|+++|+.|||+|+++|+.+.|.. +.+-|-+.+ |.+| |++ ++-|-+-+... |+..
T Consensus 43 ~~c~~~~d~~~a~~va~~LgIp~~v~d~~~~f~~~Vi~~f~~~Y~~G~TP--------NPc--v~CN~~IKF~~--l~~~ 110 (356)
T PF03054_consen 43 KSCCSEEDIEDARRVAEKLGIPHYVVDLREEFWEEVIEPFLDEYRKGRTP--------NPC--VLCNRFIKFGA--LLEY 110 (356)
T ss_dssp -HHHHHHHHHHHHHHHHHHT--EEEEETHHHHHHHTHHHHHHHHHTT------------HH--HHHHHHTTTTH--HHHH
T ss_pred CCCCchhhHHHHHHHHHhcCCCEEEEChHHHHHHHHHHHHHHHHhcCCCC--------ChH--HhhchhhhHHH--HHHH
Confidence 346789999999999999999999987764 344444322 5555 344 44465444443 3333
Q ss_pred hhcCccccCCCCcEEEEcCCCccc
Q 009550 497 ASLLPWVHNKPGFYLVLGSSNVDE 520 (532)
Q Consensus 497 a~~~~~~~~~~~~~lvlgT~n~sE 520 (532)
|.. ..| .=.+.||+..-
T Consensus 111 a~~------~~g-~d~iATGHYAr 127 (356)
T PF03054_consen 111 ADE------GLG-ADYIATGHYAR 127 (356)
T ss_dssp HHT------TTT--SEEE---SEE
T ss_pred HHh------hcC-CCeeccceeEE
Confidence 433 024 46789988743
No 58
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=98.94 E-value=2.5e-09 Score=102.50 Aligned_cols=75 Identities=24% Similarity=0.283 Sum_probs=65.3
Q ss_pred hHHHHHHHHhCCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEE
Q 009550 337 CWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTV 416 (532)
Q Consensus 337 ~~L~~~l~~~~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (532)
.-|+.|++..+ +++|++|||+|||++|.++ .++ +| + ++.+|
T Consensus 8 ~~l~~~ik~~~--kv~vAfSGGvDSslLa~la-------~~~--------------lG-~---------------~v~Av 48 (269)
T COG1606 8 ERLKKAIKEKK--KVVVAFSGGVDSSLLAKLA-------KEA--------------LG-D---------------NVVAV 48 (269)
T ss_pred HHHHHHHhhcC--eEEEEecCCccHHHHHHHH-------HHH--------------hc-c---------------ceEEE
Confidence 35778888875 9999999999999998888 456 55 3 58999
Q ss_pred ecCCCCCCHHhHHHHHHHHHHhCCceEEEecHHH
Q 009550 417 FMGSENSSQETRMLAKKLADEIGSWHLDVSIDTV 450 (532)
Q Consensus 417 ~~~~~~s~~~~~~~a~~la~~lg~~~~~i~i~~~ 450 (532)
+.-|++.++...+.|...|+++|+.|..|++..+
T Consensus 49 Tv~sP~~p~~e~e~A~~~A~~iGi~H~~i~~~~~ 82 (269)
T COG1606 49 TVDSPYIPRREIEEAKNIAKEIGIRHEFIKMNRM 82 (269)
T ss_pred EEecCCCChhhhhHHHHHHHHhCCcceeeehhhc
Confidence 9999999999999999999999999999998653
No 59
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=98.93 E-value=7.9e-09 Score=102.53 Aligned_cols=75 Identities=31% Similarity=0.328 Sum_probs=62.1
Q ss_pred hHHHHHHHHhCCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEE
Q 009550 337 CWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTV 416 (532)
Q Consensus 337 ~~L~~~l~~~~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (532)
.-|+++|++. ++++|++|||+||++++.++. + .+. .++++
T Consensus 3 ~~l~~~l~~~--~~vlVa~SGGvDSs~ll~la~-------~---------------~g~----------------~v~av 42 (252)
T TIGR00268 3 ENLRNFLKEF--KKVLIAYSGGVDSSLLAAVCS-------D---------------AGT----------------EVLAI 42 (252)
T ss_pred HHHHHHHHhc--CCEEEEecCcHHHHHHHHHHH-------H---------------hCC----------------CEEEE
Confidence 3577888886 589999999999999888772 1 232 48899
Q ss_pred ecCCCCCCHHhHHHHHHHHHHhCCceEEEecHHHH
Q 009550 417 FMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVV 451 (532)
Q Consensus 417 ~~~~~~s~~~~~~~a~~la~~lg~~~~~i~i~~~~ 451 (532)
++.+...++.+.++|+++|+.+|++|++++++++.
T Consensus 43 ~~~~~~~~~~e~~~a~~~a~~lgi~~~ii~~~~~~ 77 (252)
T TIGR00268 43 TVVSPSISPRELEDAIIIAKEIGVNHEFVKIDKMI 77 (252)
T ss_pred EecCCCCCHHHHHHHHHHHHHcCCCEEEEEcHHHH
Confidence 99887777888899999999999999999997644
No 60
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=98.90 E-value=1.6e-08 Score=92.52 Aligned_cols=119 Identities=18% Similarity=0.191 Sum_probs=77.7
Q ss_pred eEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHHhHH
Q 009550 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRM 429 (532)
Q Consensus 350 ~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 429 (532)
.++|++|||+||+++++++. +. .+ . ++.++++.....++.+.+
T Consensus 3 d~~v~lSGG~DSs~ll~l~~-------~~--------------~~-~---------------~v~~v~~~~g~~~~~~~~ 45 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLLK-------EK--------------YG-L---------------NPLAVTVDNGFNSEEAVK 45 (154)
T ss_pred CEEEECCCchhHHHHHHHHH-------HH--------------hC-C---------------ceEEEEeCCCCCCHHHHH
Confidence 58999999999999888772 22 11 1 367788876666677889
Q ss_pred HHHHHHHH-hCCceEEEecHHHHHHHHHHhHhhhCCCCCcccCCCccccccchhhhhhhhhHHHHHHHhhcCccccCCCC
Q 009550 430 LAKKLADE-IGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPG 508 (532)
Q Consensus 430 ~a~~la~~-lg~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~qaR~R~~~l~~~a~~~~~~~~~~~ 508 (532)
.++++|+. +++.+..+++++..+.....+. +.. .+ ..+...|.|...+...|... |
T Consensus 46 ~~~~~a~~g~~~~~~~~~~~~~~~~~~~~l~---~~~-----------~~--p~~~~~~~~~~~~~~~A~~~-------g 102 (154)
T cd01996 46 NIKNLIKKGLDLDHLVINPEEMKDLQLARFK---AKV-----------GD--PCWPCDTAIFTSLYKVALKF-------G 102 (154)
T ss_pred HHHHHHHhCCCeEEEecCHHHHHHHHHHHHh---ccc-----------CC--CChhhhHHHHHHHHHHHHHh-------C
Confidence 99999999 4444566666655444333332 111 11 12344577777777665543 5
Q ss_pred cEEEEcCCCccccccccccc
Q 009550 509 FYLVLGSSNVDEGLRGYLTK 528 (532)
Q Consensus 509 ~~lvlgT~n~sE~~~Gy~T~ 528 (532)
...++...|.+|...||.+.
T Consensus 103 ~~~il~G~~~de~~~Gy~~~ 122 (154)
T cd01996 103 IPLIITGENPAQEFGGIREE 122 (154)
T ss_pred cCEEEeCcCHHHhccccccc
Confidence 33677777899999999864
No 61
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=98.88 E-value=8.4e-09 Score=104.79 Aligned_cols=81 Identities=30% Similarity=0.361 Sum_probs=63.4
Q ss_pred CCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCC-----
Q 009550 348 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSEN----- 422 (532)
Q Consensus 348 ~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 422 (532)
..+++++||||+|||++|.|+ ++ .|+ .|.+++|....
T Consensus 3 ~~kV~v~mSGGVDSSVaA~lL--------k~--------------QGy----------------eViGl~m~~~~~~~~~ 44 (356)
T COG0482 3 KKKVLVGMSGGVDSSVAAYLL--------KE--------------QGY----------------EVIGLFMKNWDEDGGG 44 (356)
T ss_pred CcEEEEEccCCHHHHHHHHHH--------HH--------------cCC----------------eEEEEEEEeeccCCCC
Confidence 468999999999999999987 22 465 49999998543
Q ss_pred --CCHHhHHHHHHHHHHhCCceEEEecHHHHHH-HHHHhHhhh--CCCC
Q 009550 423 --SSQETRMLAKKLADEIGSWHLDVSIDTVVSA-FLSLFQTLT--GKRP 466 (532)
Q Consensus 423 --s~~~~~~~a~~la~~lg~~~~~i~i~~~~~~-~~~~~~~~~--~~~~ 466 (532)
++.++..+|+++|+.|||+|+.+|+.+-|.. +...|-+.+ |..|
T Consensus 45 ~C~s~~d~~da~~va~~LGIp~~~vdf~~~y~~~V~~~f~~~Y~~G~TP 93 (356)
T COG0482 45 GCCSEEDLRDAERVADQLGIPLYVVDFEKEFWNKVFEYFLAEYKAGKTP 93 (356)
T ss_pred cCCchhHHHHHHHHHHHhCCceEEEchHHHHHHHHHHHHHHHHhCCCCC
Confidence 6788999999999999999999999887664 333444333 5555
No 62
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=98.77 E-value=9.9e-08 Score=98.87 Aligned_cols=131 Identities=18% Similarity=0.196 Sum_probs=85.2
Q ss_pred HHHHHHHhCC--CeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEE
Q 009550 339 LWDYLRRSGA--SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTV 416 (532)
Q Consensus 339 L~~~l~~~~~--~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (532)
|.+.+++.+. -.++||+|||+||+++|.++ ++. ++. +++++
T Consensus 48 l~~~~k~~~~~~yD~iV~lSGGkDSs~la~ll-------~~~--------------~gl----------------~~l~v 90 (343)
T TIGR03573 48 LVDKIKKKGGGRYDCIIGVSGGKDSTYQAHVL-------KKK--------------LGL----------------NPLLV 90 (343)
T ss_pred HHHHHHhcCCCCCCEEEECCCCHHHHHHHHHH-------HHH--------------hCC----------------ceEEE
Confidence 3355555442 35999999999999987676 233 332 36777
Q ss_pred ecCCCCCCHHhHHHHHHHHHHhCCceEEEecHHHHHHHHHHhHhhhCCCCCcccCCCccccccchhhhhhhhhHHHHHHH
Q 009550 417 FMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFML 496 (532)
Q Consensus 417 ~~~~~~s~~~~~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~qaR~R~~~l~~~ 496 (532)
++.....++...++++.+++.+|++|+++.++.- .+...+...+... .+.+.... +.++..++.+
T Consensus 91 t~~~~~~~e~~~~n~~~~~~~lgvd~~~i~~d~~--~~~~l~~~~~~~~-----------~~pc~~c~--~~~~~~l~~~ 155 (343)
T TIGR03573 91 TVDPGWNTELGVKNLNNLIKKLGFDLHTITINPE--TFRKLQRAYFKKV-----------GDPEWPQD--HAIFASVYQV 155 (343)
T ss_pred EECCCCCCHHHHHHHHHHHHHcCCCeEEEeCCHH--HHHHHHHHHHhcc-----------CCCchhhh--hHHHHHHHHH
Confidence 7776666788888999999999999999988632 2222222222111 12222222 4556666666
Q ss_pred hhcCccccCCCCcEEEEcCCCccccccccccc
Q 009550 497 ASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTK 528 (532)
Q Consensus 497 a~~~~~~~~~~~~~lvlgT~n~sE~~~Gy~T~ 528 (532)
|... |-.+|+.-.|.+|...||.|.
T Consensus 156 A~~~-------gi~~Il~G~~~dE~fgGy~~~ 180 (343)
T TIGR03573 156 ALKF-------NIPLIIWGENIAEEYGGDSEE 180 (343)
T ss_pred HHHh-------CCCEEEeCCCHHHhcCCcccc
Confidence 6543 544777778999999999875
No 63
>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=6e-08 Score=95.06 Aligned_cols=120 Identities=22% Similarity=0.258 Sum_probs=83.6
Q ss_pred CCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCC-------
Q 009550 348 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGS------- 420 (532)
Q Consensus 348 ~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 420 (532)
..+++++||||+|||+.|.|+. + -|+ ++.+|+|.-
T Consensus 5 ~~~VvvamSgGVDSsVaa~Ll~--------~--------------~g~----------------~v~gv~M~nWd~~de~ 46 (377)
T KOG2805|consen 5 PDRVVVAMSGGVDSSVAARLLA--------A--------------RGY----------------NVTGVFMKNWDSLDEF 46 (377)
T ss_pred cceEEEEecCCchHHHHHHHHH--------h--------------cCC----------------CeeEEeeecccccccc
Confidence 4689999999999999888873 2 344 499999973
Q ss_pred --CCCCHHhHHHHHHHHHHhCCceEEEecHH-----HHHHHHHHhHhhhCCCCCcccCCCccccccchhhhhhh-hhHHH
Q 009550 421 --ENSSQETRMLAKKLADEIGSWHLDVSIDT-----VVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQAR-IRMVL 492 (532)
Q Consensus 421 --~~s~~~~~~~a~~la~~lg~~~~~i~i~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~qaR-~R~~~ 492 (532)
..+.+.++++|+.+|+.|+|+++.+|... +|..+++..+. |..| +++-++-..|+-- .++-.
T Consensus 47 ~s~cp~e~D~~da~~Vc~~LnI~~~~Vnf~kEYW~~Vfs~~L~~Y~~--G~TP--------NPDI~CN~~IKFg~~~~~a 116 (377)
T KOG2805|consen 47 GSQCPAERDWKDAKRVCKQLNIPLHQVNFVKEYWNDVFSPFLEEYEN--GRTP--------NPDILCNKHIKFGKFFKHA 116 (377)
T ss_pred ccCCCchhhHHHHHHHHHHhCCeeEEEeeHHHHHHHHHHHHHHHHhc--CCCC--------CCCccccceeeccHHHHHH
Confidence 34568899999999999999999999853 34444444332 5555 4565676666654 44421
Q ss_pred HHHHhhcCccccCCCCcEEEEcCCCcccccccccc
Q 009550 493 AFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLT 527 (532)
Q Consensus 493 l~~~a~~~~~~~~~~~~~lvlgT~n~sE~~~Gy~T 527 (532)
-++.| +=.|+||+..-..++-++
T Consensus 117 -----------~en~~-~d~latGHYAr~~~~~~~ 139 (377)
T KOG2805|consen 117 -----------IENLG-YDWLATGHYARVVLEDED 139 (377)
T ss_pred -----------HHhcC-CCeEEeeeeeeeecCccc
Confidence 12334 357888888766665444
No 64
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=98.70 E-value=9.5e-08 Score=99.10 Aligned_cols=66 Identities=30% Similarity=0.293 Sum_probs=53.8
Q ss_pred CeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCC--CCHH
Q 009550 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSEN--SSQE 426 (532)
Q Consensus 349 ~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~ 426 (532)
++++|++|||+||+++|.|+. . .|. .|++++|.... .+..
T Consensus 6 ~kVlValSGGVDSsvaa~LL~--------~--------------~G~----------------~V~~v~~~~~~~~~~~~ 47 (360)
T PRK14665 6 KRVLLGMSGGTDSSVAAMLLL--------E--------------AGY----------------EVTGVTFRFYEFNGSTE 47 (360)
T ss_pred CEEEEEEcCCHHHHHHHHHHH--------H--------------cCC----------------eEEEEEEecCCCCCChH
Confidence 689999999999999888872 1 343 48999997543 3567
Q ss_pred hHHHHHHHHHHhCCceEEEecHHHHH
Q 009550 427 TRMLAKKLADEIGSWHLDVSIDTVVS 452 (532)
Q Consensus 427 ~~~~a~~la~~lg~~~~~i~i~~~~~ 452 (532)
+.++|+++|+.||++|+++++++.+.
T Consensus 48 d~~~a~~va~~LgIp~~vvd~~~~f~ 73 (360)
T PRK14665 48 YLEDARALAERLGIGHITYDARKVFR 73 (360)
T ss_pred HHHHHHHHHHHhCCCEEEEecHHHHH
Confidence 78899999999999999999987654
No 65
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=98.65 E-value=2.3e-07 Score=96.09 Aligned_cols=111 Identities=21% Similarity=0.229 Sum_probs=73.2
Q ss_pred CeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHHhH
Q 009550 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (532)
Q Consensus 349 ~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 428 (532)
++++|++|||+||+++|.++ +. .|. .|++++|+.. ..+.
T Consensus 6 ~kVlVa~SGGvDSsv~a~lL--------~~--------------~G~----------------eV~av~~~~~---~~e~ 44 (362)
T PRK14664 6 KRVLVGMSGGIDSTATCLML--------QE--------------QGY----------------EIVGVTMRVW---GDEP 44 (362)
T ss_pred CEEEEEEeCCHHHHHHHHHH--------HH--------------cCC----------------cEEEEEecCc---chhH
Confidence 68999999999999988776 22 343 3899999853 2345
Q ss_pred HHHHHHHHHhCCceEEEecHHHHH-HHHHHhHh--hhCCCCCcccCCCccccccchhhhhhhhhHHHHHHHhhcCccccC
Q 009550 429 MLAKKLADEIGSWHLDVSIDTVVS-AFLSLFQT--LTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHN 505 (532)
Q Consensus 429 ~~a~~la~~lg~~~~~i~i~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~N~qaR~R~~~l~~~a~~~~~~~~ 505 (532)
++|+++|+.+|++|+++|+++.+. .+...+-+ ..|..| +++ ..-|-.-|. ..++..|..+
T Consensus 45 ~~a~~va~~LGI~~~vvd~~~~f~~~v~~~~~~~~~~G~tp--------npC--~~Cn~~iKf--~~L~~~A~~~----- 107 (362)
T PRK14664 45 QDARELAARMGIEHYVADERVPFKDTIVKNFIDEYRQGRTP--------NPC--VMCNPLFKF--RMLIEWADKL----- 107 (362)
T ss_pred HHHHHHHHHhCCCEEEEeChHHHHHHHHHHhHHHHHcCCCC--------CCc--hhhhHHHHH--HHHHHHHHHc-----
Confidence 689999999999999999987554 23222221 124443 233 344543333 3445444433
Q ss_pred CCCcEEEEcCCCccc
Q 009550 506 KPGFYLVLGSSNVDE 520 (532)
Q Consensus 506 ~~~~~lvlgT~n~sE 520 (532)
| .-.+.|||.+.
T Consensus 108 --G-~~~IATGHyar 119 (362)
T PRK14664 108 --G-CAWIATGHYSR 119 (362)
T ss_pred --C-CCEEEECCccc
Confidence 5 47899999874
No 66
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=98.64 E-value=2.3e-07 Score=94.50 Aligned_cols=75 Identities=21% Similarity=0.227 Sum_probs=56.7
Q ss_pred hHHHHHHHHhCCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEE
Q 009550 337 CWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTV 416 (532)
Q Consensus 337 ~~L~~~l~~~~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (532)
..|++++.+ ++++|++|||+||+++|.++ .++ +| + +++++
T Consensus 8 ~~l~~~v~~---~kVvValSGGVDSsvla~ll-------~~~--------------~G-~---------------~v~av 47 (311)
T TIGR00884 8 EEIREQVGD---AKVIIALSGGVDSSVAAVLA-------HRA--------------IG-D---------------RLTCV 47 (311)
T ss_pred HHHHHHhCC---CcEEEEecCChHHHHHHHHH-------HHH--------------hC-C---------------CEEEE
Confidence 456666643 78999999999999988887 344 34 2 48999
Q ss_pred ecCCCCCCHHhHHHHHHH-HHHhCCceEEEecHHHH
Q 009550 417 FMGSENSSQETRMLAKKL-ADEIGSWHLDVSIDTVV 451 (532)
Q Consensus 417 ~~~~~~s~~~~~~~a~~l-a~~lg~~~~~i~i~~~~ 451 (532)
++.+...+..+.+++.+. ++.+|++|+.+++++.+
T Consensus 48 ~vd~G~~~~~E~e~~~~~~~~~lgi~~~vvd~~e~f 83 (311)
T TIGR00884 48 FVDHGLLRKGEAEQVVKTFGDRLGLNLVYVDAKERF 83 (311)
T ss_pred EEeCCCCChHHHHHHHHHHHHHcCCcEEEEeCcHHH
Confidence 999766555666666665 55899999999998643
No 67
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=98.59 E-value=2.5e-07 Score=88.69 Aligned_cols=63 Identities=27% Similarity=0.278 Sum_probs=50.8
Q ss_pred EEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHHhHHH
Q 009550 351 FLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRML 430 (532)
Q Consensus 351 ~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 430 (532)
+++++|||+||++++.++. +. .+ . .++++++.....+..+.+.
T Consensus 1 vvva~SGG~DS~~ll~ll~-------~~--------------~~-~---------------~v~~v~vd~g~~~~~~~~~ 43 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAV-------DA--------------LG-D---------------RVLAVTATSPLFPRRELEE 43 (202)
T ss_pred CEEEccCCHHHHHHHHHHH-------HH--------------hC-C---------------cEEEEEeCCCCCCHHHHHH
Confidence 5899999999999888772 22 11 1 3788888876667789999
Q ss_pred HHHHHHHhCCceEEEecHHH
Q 009550 431 AKKLADEIGSWHLDVSIDTV 450 (532)
Q Consensus 431 a~~la~~lg~~~~~i~i~~~ 450 (532)
++++|+.+|++|+++++++.
T Consensus 44 ~~~~a~~lgi~~~~~~~~~~ 63 (202)
T cd01990 44 AKRLAKEIGIRHEVIETDEL 63 (202)
T ss_pred HHHHHHHcCCcEEEEeCCcc
Confidence 99999999999999999753
No 68
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=98.58 E-value=1.8e-07 Score=98.81 Aligned_cols=106 Identities=24% Similarity=0.190 Sum_probs=77.1
Q ss_pred CeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCC-CCCCHHh
Q 009550 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGS-ENSSQET 427 (532)
Q Consensus 349 ~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~ 427 (532)
.++++++|||+||+++|.++. + .|. .++++++.+ .++++.+
T Consensus 177 gkvvvllSGGiDS~vaa~l~~-------k---------------~G~----------------~v~av~~~~~~~~~~~~ 218 (394)
T PRK01565 177 GKALLLLSGGIDSPVAGYLAM-------K---------------RGV----------------EIEAVHFHSPPYTSERA 218 (394)
T ss_pred CCEEEEECCChhHHHHHHHHH-------H---------------CCC----------------EEEEEEEeCCCCCcHHH
Confidence 579999999999999888762 1 232 478888865 3677888
Q ss_pred HHHHHHHHHHhC-----CceEEEecHHHHHHHHHHhHhhhCCCCCcccCCCccccccchhhhhhhhhHHHHHHHhhcCcc
Q 009550 428 RMLAKKLADEIG-----SWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPW 502 (532)
Q Consensus 428 ~~~a~~la~~lg-----~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~qaR~R~~~l~~~a~~~~~ 502 (532)
.+.+.++|+.++ ++|+++|+++..+++... .+ .. ...++.-|+++.+++.+|+..
T Consensus 219 ~~~~~~~a~~l~~~~~~i~~~vv~~~~~~~~i~~~-------~~----------~~-~~~v~~Rr~~~~~a~~~A~~~-- 278 (394)
T PRK01565 219 KEKVIDLARILAKYGGRIKLHVVPFTEIQEEIKKK-------VP----------ES-YLMTLMRRFMMRIADKIAEKR-- 278 (394)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEECHHHHHHHhhc-------CC----------Cc-eEEEeHHHHHHHHHHHHHHHc--
Confidence 899999999995 999999998865443321 11 11 133677788888888777655
Q ss_pred ccCCCCcEEEEcCCCc
Q 009550 503 VHNKPGFYLVLGSSNV 518 (532)
Q Consensus 503 ~~~~~~~~lvlgT~n~ 518 (532)
| +.++.||+-
T Consensus 279 -----g-~~~IvtG~~ 288 (394)
T PRK01565 279 -----G-ALAIVTGES 288 (394)
T ss_pred -----C-CCEEEEccc
Confidence 5 578888776
No 69
>PLN02347 GMP synthetase
Probab=98.55 E-value=3e-07 Score=100.02 Aligned_cols=74 Identities=22% Similarity=0.200 Sum_probs=55.7
Q ss_pred HHHHHHHhC-CCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEe
Q 009550 339 LWDYLRRSG-ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVF 417 (532)
Q Consensus 339 L~~~l~~~~-~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (532)
+.+.....+ .+++++|||||+||+++|+++ .++ +| + ++++++
T Consensus 219 i~~i~~~~~~~~~vvvalSGGVDSsvla~l~-------~~a--------------lG-~---------------~v~av~ 261 (536)
T PLN02347 219 IELIKATVGPDEHVICALSGGVDSTVAATLV-------HKA--------------IG-D---------------RLHCVF 261 (536)
T ss_pred HHHHHHHhccCCeEEEEecCChhHHHHHHHH-------HHH--------------hC-C---------------cEEEEE
Confidence 333334444 357999999999999999998 455 44 2 589999
Q ss_pred cCCCCCCH-HhHHHHHHHHHHhCCceEEEecHH
Q 009550 418 MGSENSSQ-ETRMLAKKLADEIGSWHLDVSIDT 449 (532)
Q Consensus 418 ~~~~~s~~-~~~~~a~~la~~lg~~~~~i~i~~ 449 (532)
+++...+. +..+.++.+|+.+|++|+++++++
T Consensus 262 id~g~~~~~E~~~~~~~~a~~lgi~~~vvd~~e 294 (536)
T PLN02347 262 VDNGLLRYKEQERVMETFKRDLHLPVTCVDASE 294 (536)
T ss_pred EeCCCCChhHHHHHHHHHHHHcCCcEEEEeCcH
Confidence 99755443 444455889999999999999986
No 70
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=98.54 E-value=4.8e-07 Score=85.11 Aligned_cols=113 Identities=19% Similarity=0.091 Sum_probs=74.4
Q ss_pred eEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCC--CCHHh
Q 009550 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSEN--SSQET 427 (532)
Q Consensus 350 ~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~ 427 (532)
+++|++|||+||++++.++. +... +.+.. ..++++++.... .++.+
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~-------~~~~-----------~~~~~--------------~~~~~~~~d~~~~~~~~~~ 48 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLK-------KLQR-----------RYPYG--------------FELEALTVDEGIPGYRDES 48 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHH-------HHHh-----------hcCCC--------------eEEEEEEEECCCCCCcHHH
Confidence 48999999999999888773 2210 01000 047888887543 45778
Q ss_pred HHHHHHHHHHhCCceEEEecHHHHHHHHHHhHhhhCCCCCcccCCCccccccchhhhhhhhhHHHHHHHhhcCccccCCC
Q 009550 428 RMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKP 507 (532)
Q Consensus 428 ~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~qaR~R~~~l~~~a~~~~~~~~~~ 507 (532)
.+.++++|+.+|++++.+++++.+ ....... . ......++...|+|+..+|..|..+
T Consensus 49 ~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~-----~----------~~~~~~~~~c~~~r~~~l~~~a~~~------- 105 (185)
T cd01993 49 LEVVERLAEELGIELEIVSFKEEY-TDDIEVK-----K----------RGGKSPCSLCGVLRRGLLNKIAKEL------- 105 (185)
T ss_pred HHHHHHHHHHcCCceEEEehhhhc-chhhhhh-----c----------cCCCCCCCccHHHHHHHHHHHHHHc-------
Confidence 889999999999999999998655 1111000 0 1122345677789999999777654
Q ss_pred CcEEEEcCCCc
Q 009550 508 GFYLVLGSSNV 518 (532)
Q Consensus 508 ~~~lvlgT~n~ 518 (532)
| .-++.||+.
T Consensus 106 g-~~~l~~Gh~ 115 (185)
T cd01993 106 G-ADKLATGHN 115 (185)
T ss_pred C-CCEEEEcCC
Confidence 4 456666665
No 71
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=98.50 E-value=9.6e-07 Score=91.60 Aligned_cols=66 Identities=30% Similarity=0.368 Sum_probs=51.9
Q ss_pred CeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCC------
Q 009550 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSEN------ 422 (532)
Q Consensus 349 ~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 422 (532)
+++++++|||+||+++|.++. . .+. .|++++|....
T Consensus 1 ~kVlValSGGvDSsvla~lL~--------~--------------~G~----------------~V~~v~~~~~~~~~~~~ 42 (346)
T PRK00143 1 KRVVVGMSGGVDSSVAAALLK--------E--------------QGY----------------EVIGVFMKLWDDDDETG 42 (346)
T ss_pred CeEEEEecCCHHHHHHHHHHH--------H--------------cCC----------------cEEEEEEeCCCcccccc
Confidence 379999999999999887762 2 342 37888886431
Q ss_pred ----CCHHhHHHHHHHHHHhCCceEEEecHHHHH
Q 009550 423 ----SSQETRMLAKKLADEIGSWHLDVSIDTVVS 452 (532)
Q Consensus 423 ----s~~~~~~~a~~la~~lg~~~~~i~i~~~~~ 452 (532)
.+..+.++|+++|+.+|++|+++++++.+.
T Consensus 43 ~~~~~s~~d~~~a~~~a~~LgIp~~vvd~~~~f~ 76 (346)
T PRK00143 43 KGGCCAEEDIADARRVADKLGIPHYVVDFEKEFW 76 (346)
T ss_pred cCCcCcHHHHHHHHHHHHHcCCcEEEEeCHHHHH
Confidence 356788899999999999999999977553
No 72
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=98.49 E-value=1.1e-06 Score=91.43 Aligned_cols=64 Identities=33% Similarity=0.402 Sum_probs=50.9
Q ss_pred eEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCC--------
Q 009550 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSE-------- 421 (532)
Q Consensus 350 ~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 421 (532)
++++++|||+||+++|.++. . .+. .|++++|...
T Consensus 1 kVlValSGGvDSsvla~lL~--------~--------------~g~----------------~v~~v~i~~~~~~~~~~~ 42 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALLK--------E--------------QGY----------------EVIGVFMKNWDEDDGKGG 42 (349)
T ss_pred CEEEEecCCHHHHHHHHHHH--------H--------------cCC----------------cEEEEEEecccccccccC
Confidence 47899999999999888762 2 343 3888888643
Q ss_pred CCCHHhHHHHHHHHHHhCCceEEEecHHHH
Q 009550 422 NSSQETRMLAKKLADEIGSWHLDVSIDTVV 451 (532)
Q Consensus 422 ~s~~~~~~~a~~la~~lg~~~~~i~i~~~~ 451 (532)
..+..+.++|+++|+.+|++|+++++++.+
T Consensus 43 ~~s~~d~~~a~~va~~lgI~~~vvd~~~~f 72 (349)
T cd01998 43 CCSEEDLKDARRVADQLGIPHYVVNFEKEY 72 (349)
T ss_pred CCCHHHHHHHHHHHHHhCCcEEEEECcHHH
Confidence 235678899999999999999999997644
No 73
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=98.45 E-value=1.5e-06 Score=90.12 Aligned_cols=66 Identities=26% Similarity=0.281 Sum_probs=52.0
Q ss_pred CeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCC-------C
Q 009550 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGS-------E 421 (532)
Q Consensus 349 ~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 421 (532)
+++++++|||+||+++|.++. + .+. .|++++|.. .
T Consensus 1 ~kVlValSGGvDSsv~a~lL~-------~---------------~G~----------------~V~~v~~~~~~~~~~~~ 42 (352)
T TIGR00420 1 KKVIVGLSGGVDSSVSAYLLK-------Q---------------QGY----------------EVVGVFMKNWEEDDKND 42 (352)
T ss_pred CeEEEEEeCCHHHHHHHHHHH-------H---------------cCC----------------eEEEEEEEccccccccc
Confidence 378999999999999888872 2 343 489999941 1
Q ss_pred ---CCCHHhHHHHHHHHHHhCCceEEEecHHHHH
Q 009550 422 ---NSSQETRMLAKKLADEIGSWHLDVSIDTVVS 452 (532)
Q Consensus 422 ---~s~~~~~~~a~~la~~lg~~~~~i~i~~~~~ 452 (532)
..+..+.++|+++|+.+|++|+++++++.+.
T Consensus 43 ~~~c~~~~~~~~a~~va~~lgIp~~vid~~~~f~ 76 (352)
T TIGR00420 43 GHGCTSAEDLRDAQAICEKLGIPLEKVNFQKEYW 76 (352)
T ss_pred ccCcCCHHHHHHHHHHHHHcCCCEEEEECHHHHH
Confidence 1456788899999999999999999987553
No 74
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=98.37 E-value=2.1e-06 Score=81.34 Aligned_cols=96 Identities=14% Similarity=0.094 Sum_probs=65.2
Q ss_pred eEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCC--CCHHh
Q 009550 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSEN--SSQET 427 (532)
Q Consensus 350 ~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~ 427 (532)
+++|++|||.||++++.++. +.. ...+. .+.++++.... .++.+
T Consensus 1 ~v~va~SGG~DS~~ll~ll~-------~~~-----------~~~~~----------------~v~~v~vd~g~~~~~~~~ 46 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLL-------KLQ-----------PKLKI----------------RLIAAHVDHGLRPESDEE 46 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHH-------HHH-----------HHcCC----------------CEEEEEeCCCCChhHHHH
Confidence 48999999999999888873 221 00121 37788876543 34667
Q ss_pred HHHHHHHHHHhCCceEEEecHHHHHHHHHHhHhhhCCCCCcccCCCccccccchhhhhhhhhHHHHHHHhhcC
Q 009550 428 RMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLL 500 (532)
Q Consensus 428 ~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~qaR~R~~~l~~~a~~~ 500 (532)
.+.++++|+.+|++++.++++.... ... .....++...++|+..++.+|..+
T Consensus 47 ~~~~~~~~~~~gi~~~~~~~~~~~~------~~~---------------~~~~~~~~~r~~R~~~l~~~a~~~ 98 (189)
T TIGR02432 47 AEFVQQFCKKLNIPLEIKKVDVKAL------AKG---------------KKKNLEEAAREARYDFFEEIAKKH 98 (189)
T ss_pred HHHHHHHHHHcCCCEEEEEecchhh------ccc---------------cCCCHHHHHHHHHHHHHHHHHHHc
Confidence 8899999999999999999864221 100 111245667789998888777644
No 75
>PRK04527 argininosuccinate synthase; Provisional
Probab=98.36 E-value=1.1e-06 Score=91.46 Aligned_cols=66 Identities=29% Similarity=0.382 Sum_probs=55.4
Q ss_pred CeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHHhH
Q 009550 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (532)
Q Consensus 349 ~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 428 (532)
++++|++|||+|||+++.++ ++ .|+ .|+++++.+...+..+.
T Consensus 3 ~kVvVA~SGGvDSSvla~~l--------~e--------------~G~----------------~Viavt~d~gq~~~~El 44 (400)
T PRK04527 3 KDIVLAFSGGLDTSFCIPYL--------QE--------------RGY----------------AVHTVFADTGGVDAEER 44 (400)
T ss_pred CcEEEEEcCChHHHHHHHHH--------HH--------------cCC----------------cEEEEEEEeCCCCHHHH
Confidence 68999999999999987776 22 343 38999998776667899
Q ss_pred HHHHHHHHHhCC-ceEEEecHHHHH
Q 009550 429 MLAKKLADEIGS-WHLDVSIDTVVS 452 (532)
Q Consensus 429 ~~a~~la~~lg~-~~~~i~i~~~~~ 452 (532)
++|+++|+.+|+ +|+++|+++.+.
T Consensus 45 ~~a~~~A~~lG~~~~~viD~~eef~ 69 (400)
T PRK04527 45 DFIEKRAAELGAASHVTVDGGPAIW 69 (400)
T ss_pred HHHHHHHHHcCCCeEEEecCHHHHH
Confidence 999999999999 599999998765
No 76
>PRK00074 guaA GMP synthase; Reviewed
Probab=98.36 E-value=1.1e-06 Score=95.75 Aligned_cols=81 Identities=20% Similarity=0.193 Sum_probs=61.2
Q ss_pred HHhcchhhHHHHHHHHhCCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhh
Q 009550 330 EIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFA 409 (532)
Q Consensus 330 ~~~~~~~~~L~~~l~~~~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (532)
.+.......|+++++. ++++|++|||+||+++|.++ .++ +| +
T Consensus 200 ~~~~~~~~~l~~~v~~---~~vlva~SGGvDS~vll~ll-------~~~--------------lg-~------------- 241 (511)
T PRK00074 200 NFIEEAIEEIREQVGD---KKVILGLSGGVDSSVAAVLL-------HKA--------------IG-D------------- 241 (511)
T ss_pred HHHHHHHHHHHHhcCC---CcEEEEeCCCccHHHHHHHH-------HHH--------------hC-C-------------
Confidence 3444444667777763 79999999999999988887 344 34 2
Q ss_pred cceEEEEecCCCCCCHHhHHHHHH-HHHHhCCceEEEecHHH
Q 009550 410 KRIFYTVFMGSENSSQETRMLAKK-LADEIGSWHLDVSIDTV 450 (532)
Q Consensus 410 ~~~~~~~~~~~~~s~~~~~~~a~~-la~~lg~~~~~i~i~~~ 450 (532)
+++++++.+...+..+.+++.+ +|+.+|++|+++++++.
T Consensus 242 --~v~av~vd~g~~~~~e~~~~~~~~a~~lgi~~~vvd~~~~ 281 (511)
T PRK00074 242 --QLTCVFVDHGLLRKNEAEQVMEMFREHFGLNLIHVDASDR 281 (511)
T ss_pred --ceEEEEEeCCCCCHHHHHHHHHHHHHHcCCcEEEEccHHH
Confidence 4899999976655556666775 78999999999999754
No 77
>PRK00919 GMP synthase subunit B; Validated
Probab=98.35 E-value=1.2e-06 Score=88.68 Aligned_cols=79 Identities=18% Similarity=0.126 Sum_probs=61.7
Q ss_pred hcchhhHHHHHHHHhCCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcc
Q 009550 332 AFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKR 411 (532)
Q Consensus 332 ~~~~~~~L~~~l~~~~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (532)
.......|++.+.. +++++++|||+||+++|.++ .++ +|.
T Consensus 8 ~~~~~~~l~~~~~~---~kVlVa~SGGVDSsvla~la-------~~~--------------lG~---------------- 47 (307)
T PRK00919 8 IEEAIEEIREEIGD---GKAIIALSGGVDSSVAAVLA-------HRA--------------IGD---------------- 47 (307)
T ss_pred HHHHHHHHHHHhCC---CCEEEEecCCHHHHHHHHHH-------HHH--------------hCC----------------
Confidence 33344567776643 79999999999999998887 344 442
Q ss_pred eEEEEecCCCCCCHHhHHHHHHHHHHhCCceEEEecHHHH
Q 009550 412 IFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVV 451 (532)
Q Consensus 412 ~~~~~~~~~~~s~~~~~~~a~~la~~lg~~~~~i~i~~~~ 451 (532)
+++++++.+...++.+.+.++++|+++ ++|+.+++++.+
T Consensus 48 ~v~aV~vD~G~~~~~E~e~a~~~~~~~-i~~~vvd~~e~f 86 (307)
T PRK00919 48 RLTPVFVDTGLMRKGETERIKETFSDM-LNLRIVDAKDRF 86 (307)
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHhcc-CCcEEEECCHHH
Confidence 489999987766778889999999988 999999997643
No 78
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=98.30 E-value=2e-06 Score=86.96 Aligned_cols=63 Identities=24% Similarity=0.301 Sum_probs=52.2
Q ss_pred eEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHHhHH
Q 009550 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRM 429 (532)
Q Consensus 350 ~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 429 (532)
+++|++|||+||+++|.++ .++ +|. +++++++.+...++.+.+
T Consensus 1 kVlVa~SGGVDSsvla~ll-------~~~--------------lG~----------------~v~aV~vd~g~~~~~E~~ 43 (295)
T cd01997 1 KVILALSGGVDSTVAAVLL-------HKA--------------IGD----------------RLTCVFVDNGLLRKNEAE 43 (295)
T ss_pred CEEEEEcCChHHHHHHHHH-------HHH--------------hCC----------------cEEEEEecCCCCChHHHH
Confidence 4789999999999998888 344 342 489999987766677888
Q ss_pred HHHHHHHHhCC-ceEEEecHH
Q 009550 430 LAKKLADEIGS-WHLDVSIDT 449 (532)
Q Consensus 430 ~a~~la~~lg~-~~~~i~i~~ 449 (532)
+++++|+++|+ +|+.+++++
T Consensus 44 ~~~~~~~~~g~i~~~vvd~~e 64 (295)
T cd01997 44 RVEELFSKLLGINLIVVDASE 64 (295)
T ss_pred HHHHHHHHhCCCcEEEEcCcH
Confidence 99999999987 999999975
No 79
>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .
Probab=98.27 E-value=5e-06 Score=83.08 Aligned_cols=72 Identities=26% Similarity=0.361 Sum_probs=48.4
Q ss_pred HHHHHHHhCCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEec
Q 009550 339 LWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFM 418 (532)
Q Consensus 339 L~~~l~~~~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (532)
++.+++.. ..+.+.||||+||+++|+++. + .+... . ...++..
T Consensus 8 v~~~~~~~--~~v~~~LSGGlDSs~va~~~~-------~---------------~~~~~-------~------~~~~~~~ 50 (269)
T cd01991 8 VRRRLRSD--VPVGVLLSGGLDSSLVAALAA-------R---------------LLPEP-------V------KTFSIGF 50 (269)
T ss_pred HHHHhccC--CceEEeecccHHHHHHHHHHH-------H---------------hhCCC-------C------ceEEEee
Confidence 34444443 589999999999999988873 2 12110 0 1334433
Q ss_pred CCCCCCHHhHHHHHHHHHHhCCceEEEecHH
Q 009550 419 GSENSSQETRMLAKKLADEIGSWHLDVSIDT 449 (532)
Q Consensus 419 ~~~~s~~~~~~~a~~la~~lg~~~~~i~i~~ 449 (532)
+ .....+...|+.+|+.+|++|+.+++++
T Consensus 51 ~--~~~~~e~~~a~~~a~~l~~~~~~~~~~~ 79 (269)
T cd01991 51 G--FEGSDEREYARRVAEHLGTEHHEVEFTP 79 (269)
T ss_pred C--CCCCChHHHHHHHHHHhCCcceEEEcCH
Confidence 3 2333457889999999999999998864
No 80
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=98.27 E-value=2.1e-06 Score=83.60 Aligned_cols=63 Identities=17% Similarity=0.146 Sum_probs=52.0
Q ss_pred CeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHHhH
Q 009550 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (532)
Q Consensus 349 ~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 428 (532)
++++|++|||+||+++++++. + .+ + .|+++++.....+..+.
T Consensus 2 ~kvvVl~SGG~DSt~~l~~a~-------~---------------~~-~---------------~v~alt~dygq~~~~El 43 (231)
T PRK11106 2 KRAVVVFSGGQDSTTCLIQAL-------Q---------------QY-D---------------EVHCVTFDYGQRHRAEI 43 (231)
T ss_pred CcEEEEeeCcHHHHHHHHHHH-------h---------------cC-C---------------eEEEEEEEeCCCCHHHH
Confidence 579999999999999887761 1 12 1 48899988766667789
Q ss_pred HHHHHHHHHhCCc-eEEEecHH
Q 009550 429 MLAKKLADEIGSW-HLDVSIDT 449 (532)
Q Consensus 429 ~~a~~la~~lg~~-~~~i~i~~ 449 (532)
+.|+.+|+.+|++ |++|+++.
T Consensus 44 ~~a~~ia~~~gi~~h~vid~~~ 65 (231)
T PRK11106 44 DVARELALKLGARAHKVLDVTL 65 (231)
T ss_pred HHHHHHHHHcCCCeEEEEeccc
Confidence 9999999999996 99999975
No 81
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=98.23 E-value=3.4e-06 Score=80.55 Aligned_cols=64 Identities=27% Similarity=0.288 Sum_probs=52.2
Q ss_pred CCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHHh
Q 009550 348 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQET 427 (532)
Q Consensus 348 ~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 427 (532)
.++.++-||||+||+++|+.+ .+. ++ .|+++++.--+-....
T Consensus 2 ~~kavvl~SGG~DStt~l~~a-------~~~---------------~~----------------ev~alsfdYGQrh~~E 43 (222)
T COG0603 2 MKKAVVLLSGGLDSTTCLAWA-------KKE---------------GY----------------EVHALTFDYGQRHRKE 43 (222)
T ss_pred CceEEEEccCChhHHHHHHHH-------Hhc---------------CC----------------EEEEEEeeCCCCcHHH
Confidence 367899999999999988887 222 22 5899988755556888
Q ss_pred HHHHHHHHHHhCCceEEEecHH
Q 009550 428 RMLAKKLADEIGSWHLDVSIDT 449 (532)
Q Consensus 428 ~~~a~~la~~lg~~~~~i~i~~ 449 (532)
.+.|+++|+.||++|++||++-
T Consensus 44 le~A~~iak~lgv~~~iid~~~ 65 (222)
T COG0603 44 LEAAKELAKKLGVPHHIIDVDL 65 (222)
T ss_pred HHHHHHHHHHcCCCeEEechhH
Confidence 8999999999999999999954
No 82
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=98.23 E-value=2.7e-06 Score=81.51 Aligned_cols=61 Identities=23% Similarity=0.283 Sum_probs=49.4
Q ss_pred EEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHHhHHH
Q 009550 351 FLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRML 430 (532)
Q Consensus 351 ~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 430 (532)
+++++|||+||++++.++. + .+. .|++++++.......+.+.
T Consensus 1 ~vv~lSGG~DSs~~~~~~~-------~---------------~g~----------------~v~~~~~~~~~~~~~e~~~ 42 (201)
T TIGR00364 1 AVVVLSGGQDSTTCLAIAK-------D---------------EGY----------------EVHAITFDYGQRHSRELES 42 (201)
T ss_pred CEEEeccHHHHHHHHHHHH-------H---------------cCC----------------cEEEEEEECCCCCHHHHHH
Confidence 4789999999999877762 1 232 3888998866556778889
Q ss_pred HHHHHHHhCCceEEEecHH
Q 009550 431 AKKLADEIGSWHLDVSIDT 449 (532)
Q Consensus 431 a~~la~~lg~~~~~i~i~~ 449 (532)
|+++|+.+|++|++++++.
T Consensus 43 a~~~a~~lgi~~~~~~~~~ 61 (201)
T TIGR00364 43 ARKIAEALGIEHHVIDLSL 61 (201)
T ss_pred HHHHHHHhCCCeEEEechh
Confidence 9999999999999999975
No 83
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=98.15 E-value=1.4e-05 Score=86.53 Aligned_cols=81 Identities=27% Similarity=0.189 Sum_probs=51.3
Q ss_pred HHhcchhhHHHHHHHHhCCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhh
Q 009550 330 EIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFA 409 (532)
Q Consensus 330 ~~~~~~~~~L~~~l~~~~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (532)
++...+...++.+++. ...+.+.||||+||+++|+++. +. ....
T Consensus 237 ~l~~~l~~aV~~r~~~--~~~vg~~LSGGlDSs~iaa~a~-------~~--------------~~~~------------- 280 (467)
T TIGR01536 237 ELRSLLEDAVKRRLVA--DVPVGVLLSGGLDSSLVAAIAR-------RE--------------APRG------------- 280 (467)
T ss_pred HHHHHHHHHHHHHhcc--CCceEEEecCChhHHHHHHHHH-------Hh--------------cCCC-------------
Confidence 3444444445544442 2578899999999999988873 21 1100
Q ss_pred cceEEE--EecCCCCCCHHhHHHHHHHHHHhCCceEEEecHH
Q 009550 410 KRIFYT--VFMGSENSSQETRMLAKKLADEIGSWHLDVSIDT 449 (532)
Q Consensus 410 ~~~~~~--~~~~~~~s~~~~~~~a~~la~~lg~~~~~i~i~~ 449 (532)
.+.+ +.++. ...-.+...|+++|+.+|++|+++++++
T Consensus 281 --~~~~~t~~~~~-~~~~~E~~~A~~vA~~lg~~~~~i~~~~ 319 (467)
T TIGR01536 281 --PVHTFSIGFEG-SPDFDESPYARKVADHLGTEHHEVLFSV 319 (467)
T ss_pred --CceEEEEecCC-CCCCChHHHHHHHHHHhCCcCeEEECCH
Confidence 1344 44442 1122345589999999999999999964
No 84
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=98.13 E-value=3.1e-05 Score=79.34 Aligned_cols=140 Identities=31% Similarity=0.377 Sum_probs=84.4
Q ss_pred HhcchhhHHHHHHHHhCCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhc
Q 009550 331 IAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAK 410 (532)
Q Consensus 331 ~~~~~~~~L~~~l~~~~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (532)
+.+.+....+++|-.. ..+-+-||||+||||+|+++.+ ++++ +.+++ +.
T Consensus 210 ~r~~~~~aV~KRLM~d--~p~GvLLSGGLDSSLvAsia~R-------~lk~------~~~~~-~~--------------- 258 (543)
T KOG0571|consen 210 LRHTLEKAVRKRLMTD--VPFGVLLSGGLDSSLVASIAAR-------ELKK------AQAAR-GS--------------- 258 (543)
T ss_pred HHHHHHHHHHHHhhcc--CceeEEeeCCchHHHHHHHHHH-------HHHH------hhhhc-CC---------------
Confidence 5555555556665544 4666779999999999999953 3321 01111 11
Q ss_pred ceEEEEecCCCCCCHHhHHHHHHHHHHhCCceEEE--ecHHHHHHHHHHhHhhhCCCCCcccCCCccccccchhhhhhhh
Q 009550 411 RIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDV--SIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARI 488 (532)
Q Consensus 411 ~~~~~~~~~~~~s~~~~~~~a~~la~~lg~~~~~i--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~qaR~ 488 (532)
.++++...-.+| .+..+|+++|+.||+.|++. ++++-.+++ .++.-+. +..|++ -|+|-.
T Consensus 259 -~lhsFaIGle~S--PDL~aarkVAd~igt~Hhe~~ft~qegidal----~eVI~hL---------ETYDvt--tIRast 320 (543)
T KOG0571|consen 259 -KLHSFAIGLEDS--PDLLAARKVADFIGTIHHEHTFTIQEGIDAL----DEVIYHL---------ETYDVT--TIRAST 320 (543)
T ss_pred -CceEEEecCCCC--hhHHHHHHHHHHhCCcceEEEEcHHHHHHHH----HHHheee---------eccccc--eEecCC
Confidence 256655554444 46789999999999999776 555555444 4443322 245666 566655
Q ss_pred hHHHHHHHhhcCccccCCCCcEEEEcCCCccccccccc
Q 009550 489 RMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYL 526 (532)
Q Consensus 489 R~~~l~~~a~~~~~~~~~~~~~lvlgT~n~sE~~~Gy~ 526 (532)
-|-+ +++-. .+.|-.+||+--..+|+.-||-
T Consensus 321 pmyL---lsr~I----kk~gvkmvlSGEGsDEifggYl 351 (543)
T KOG0571|consen 321 PMYL---LSRKI----KKLGVKMVLSGEGSDEIFGGYL 351 (543)
T ss_pred chHH---HHHHH----HhcceEEEEecCCchhhhccee
Confidence 5533 33322 1224456776666788888874
No 85
>PRK13820 argininosuccinate synthase; Provisional
Probab=98.13 E-value=7.4e-06 Score=85.67 Aligned_cols=67 Identities=21% Similarity=0.264 Sum_probs=52.8
Q ss_pred CCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHHh
Q 009550 348 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQET 427 (532)
Q Consensus 348 ~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 427 (532)
+++++|++|||+||++++.++ .++ ++.+ .|+++++... .+..+
T Consensus 2 ~~kVvvA~SGGvDSsvll~lL-------~e~--------------~g~~---------------~Viav~vd~g-~~~~e 44 (394)
T PRK13820 2 MKKVVLAYSGGLDTSVCVPLL-------KEK--------------YGYD---------------EVITVTVDVG-QPEEE 44 (394)
T ss_pred CCeEEEEEeCcHHHHHHHHHH-------HHh--------------cCCC---------------EEEEEEEECC-CChHH
Confidence 368999999999999988776 232 3421 3889998864 34567
Q ss_pred HHHHHHHHHHhCCceEEEecHHHH
Q 009550 428 RMLAKKLADEIGSWHLDVSIDTVV 451 (532)
Q Consensus 428 ~~~a~~la~~lg~~~~~i~i~~~~ 451 (532)
.+.++++|+.+|++|+++|+++.+
T Consensus 45 ~~~a~~~a~~lGi~~~vvd~~eef 68 (394)
T PRK13820 45 IKEAEEKAKKLGDKHYTIDAKEEF 68 (394)
T ss_pred HHHHHHHHHHcCCCEEEEeCHHHH
Confidence 888999999999999999998534
No 86
>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Rhizobium meliloti (Sinorhizobium meliloti), a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA [, ]. In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance []. The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr [].; PDB: 3BL5_B 2PG3_A.
Probab=98.11 E-value=7.1e-06 Score=78.97 Aligned_cols=64 Identities=22% Similarity=0.255 Sum_probs=48.1
Q ss_pred eEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHHhHH
Q 009550 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRM 429 (532)
Q Consensus 350 ~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 429 (532)
++++.+|||+||+++++++. + .+. .|++++...-.......+
T Consensus 1 Kavvl~SGG~DSt~~l~~~~-------~---------------~~~----------------~v~al~~~YGq~~~~El~ 42 (209)
T PF06508_consen 1 KAVVLFSGGLDSTTCLYWAK-------K---------------EGY----------------EVYALTFDYGQRHRRELE 42 (209)
T ss_dssp EEEEE--SSHHHHHHHHHHH-------H---------------H-S----------------EEEEEEEESSSTTCHHHH
T ss_pred CEEEEeCCCHHHHHHHHHHH-------H---------------cCC----------------eEEEEEEECCCCCHHHHH
Confidence 57899999999999888772 2 232 488998876666788899
Q ss_pred HHHHHHHHhCC-ceEEEecHHHH
Q 009550 430 LAKKLADEIGS-WHLDVSIDTVV 451 (532)
Q Consensus 430 ~a~~la~~lg~-~~~~i~i~~~~ 451 (532)
.|+++|+.+|+ +|++|+++.+.
T Consensus 43 ~a~~i~~~l~v~~~~~i~l~~~~ 65 (209)
T PF06508_consen 43 AAKKIAKKLGVKEHEVIDLSFLK 65 (209)
T ss_dssp HHHHHHHHCT-SEEEEEE-CHHH
T ss_pred HHHHHHHHhCCCCCEEeeHHHHH
Confidence 99999999999 99999998543
No 87
>PRK00509 argininosuccinate synthase; Provisional
Probab=98.08 E-value=1.1e-05 Score=84.48 Aligned_cols=66 Identities=15% Similarity=0.096 Sum_probs=51.9
Q ss_pred CCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHHh
Q 009550 348 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQET 427 (532)
Q Consensus 348 ~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 427 (532)
.++++|++|||+||++++.++ .+. +|. .|+++++..... .+
T Consensus 2 ~~kVvva~SGGlDSsvla~~l-------~e~--------------lG~----------------eViavt~d~Gq~--~d 42 (399)
T PRK00509 2 KKKVVLAYSGGLDTSVIIKWL-------KET--------------YGC----------------EVIAFTADVGQG--EE 42 (399)
T ss_pred CCeEEEEEcCCHHHHHHHHHH-------HHh--------------hCC----------------eEEEEEEecCCH--HH
Confidence 368999999999999988776 232 343 389999886543 68
Q ss_pred HHHHHHHHHHhCC-ceEEEecHHHHH
Q 009550 428 RMLAKKLADEIGS-WHLDVSIDTVVS 452 (532)
Q Consensus 428 ~~~a~~la~~lg~-~~~~i~i~~~~~ 452 (532)
.++|+++|+.+|+ +|+++|+.+.|.
T Consensus 43 le~a~~~A~~lGi~~~~viD~~~ef~ 68 (399)
T PRK00509 43 LEPIREKALKSGASEIYVEDLREEFV 68 (399)
T ss_pred HHHHHHHHHHcCCCeEEEEcCHHHHH
Confidence 8899999999998 578889986553
No 88
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=98.05 E-value=4.7e-05 Score=84.23 Aligned_cols=99 Identities=31% Similarity=0.317 Sum_probs=61.2
Q ss_pred HHHhcchhhHHHHHHHHhCCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHh
Q 009550 329 EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREF 408 (532)
Q Consensus 329 ~~~~~~~~~~L~~~l~~~~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (532)
+++...+...++.+|+.. ..+.+.||||+|||++|+++.+ ..+++. .... +.
T Consensus 220 ~~lr~~L~~AV~~rl~sd--vpvGv~LSGGLDSSlIaala~~-------~~~~~~---------~~~~----------~~ 271 (586)
T PTZ00077 220 EEIREALEAAVRKRLMGD--VPFGLFLSGGLDSSIVAAIVAK-------LIKNGE---------IDLS----------KR 271 (586)
T ss_pred HHHHHHHHHHHHHHhcCC--CceEEEecCCchHHHHHHHHHH-------hhcccc---------cccc----------cc
Confidence 456666666666666533 5788899999999999999842 211000 0000 00
Q ss_pred hcceEEEEecCCCCCCHHhHHHHHHHHHHhCCceEEEec--HHHHHHHHHH
Q 009550 409 AKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSI--DTVVSAFLSL 457 (532)
Q Consensus 409 ~~~~~~~~~~~~~~s~~~~~~~a~~la~~lg~~~~~i~i--~~~~~~~~~~ 457 (532)
....+++++.....+ .+...|+++|+.+|..|+++.+ ++..+.+.+.
T Consensus 272 ~~~~l~tfsig~~~~--~D~~~Ar~vA~~lg~~h~~i~~~~~e~~~~l~~~ 320 (586)
T PTZ00077 272 GMPKLHSFCIGLEGS--PDLKAARKVAEYLGTEHHEFTFTVEEGIDALPDV 320 (586)
T ss_pred cCCCceEEEcCCCCC--chHHHHHHHHHHhCCcCcEEEECHHHHHHHHHHH
Confidence 001367777765443 4667899999999999988866 4444444433
No 89
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=98.05 E-value=4.5e-05 Score=84.19 Aligned_cols=145 Identities=21% Similarity=0.223 Sum_probs=81.1
Q ss_pred HHHhcchhhHHHHHHHHhCCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHh
Q 009550 329 EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREF 408 (532)
Q Consensus 329 ~~~~~~~~~~L~~~l~~~~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (532)
+++...+...++.+|... ..+.+.||||+|||++|+++. +.+++ .... ..+.
T Consensus 208 ~~lr~~L~~aV~~rl~sd--vpvgv~LSGGLDSSlIaala~-------~~~~~-----------~~~~-~~~~------- 259 (578)
T PLN02549 208 LVLREAFEKAVIKRLMTD--VPFGVLLSGGLDSSLVASIAA-------RHLAE-----------TKAA-RQWG------- 259 (578)
T ss_pred HHHHHHHHHHHHHHhccC--CceeEeecCCccHHHHHHHHH-------Hhhhh-----------cccc-cccC-------
Confidence 456666666666666533 468899999999999999984 22110 0000 0000
Q ss_pred hcceEEEEecCCCCCCHHhHHHHHHHHHHhCCceEEEecHHHHHHHHHHhHhhhCCCCCcccCCCccccccchhhhhhhh
Q 009550 409 AKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARI 488 (532)
Q Consensus 409 ~~~~~~~~~~~~~~s~~~~~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~qaR~ 488 (532)
+.+++++.+...+ .+...|+++|+.+|..|+++.++. +.+.+.+.++.-+.. ..+.+ . +
T Consensus 260 --~~l~tfsig~~~~--~D~~~Ar~vA~~lg~~h~ev~~~~--~e~~~~l~~~i~~le---------~~dp~--~----~ 318 (578)
T PLN02549 260 --QQLHSFCVGLEGS--PDLKAAREVADYLGTVHHEFHFTV--QEGIDAIEDVIYHLE---------TYDVT--T----I 318 (578)
T ss_pred --CCceEEecCCCCC--CHHHHHHHHHHHhCCCCeEEEECh--HHHHHHHHHHHHHhc---------CCCCc--c----c
Confidence 0366777665443 366789999999999999987652 233333333321110 01110 1 2
Q ss_pred hH-HHHHHHhhcCccccCCCCcEEEEcCCCccccccccc
Q 009550 489 RM-VLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYL 526 (532)
Q Consensus 489 R~-~~l~~~a~~~~~~~~~~~~~lvlgT~n~sE~~~Gy~ 526 (532)
|. +-.|.+++. +.+.|-..||.-...+|..-||-
T Consensus 319 ~~s~p~yll~r~----a~~~gvkVvLsGeGaDElFgGY~ 353 (578)
T PLN02549 319 RASTPMFLMSRK----IKSLGVKMVLSGEGSDEIFGGYL 353 (578)
T ss_pred hhHHHHHHHHHH----HHhcCCEEEEecCchHhhhcChH
Confidence 22 223434432 12234457776677799988983
No 90
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=98.03 E-value=1.1e-05 Score=79.51 Aligned_cols=80 Identities=28% Similarity=0.318 Sum_probs=54.0
Q ss_pred HhcchhhHHHHHHHHhCCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhc
Q 009550 331 IAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAK 410 (532)
Q Consensus 331 ~~~~~~~~L~~~l~~~~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (532)
+...+...+.++++. ...+.+.||||+||+++|+++. +. .+.
T Consensus 2 ~r~~l~~av~~rl~~--~~~i~~~LSGGlDSs~i~~~~~-------~~--------------~~~--------------- 43 (255)
T PF00733_consen 2 LRELLEEAVARRLRS--DKPIGILLSGGLDSSAIAALAA-------RQ--------------GGP--------------- 43 (255)
T ss_dssp HHHHHHHHHHHHCGC--TSEEEEE--SSHHHHHHHHHHH-------HT--------------CCS---------------
T ss_pred HHHHHHHHHHHHHhc--CCCEEEECCCChhHHHHHHHHH-------Hh--------------hCC---------------
Confidence 444455555666663 3689999999999999998883 21 121
Q ss_pred ceEEEEecCCCCCCHHhHHHHHHHHHHhCCceEEEecHH
Q 009550 411 RIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDT 449 (532)
Q Consensus 411 ~~~~~~~~~~~~s~~~~~~~a~~la~~lg~~~~~i~i~~ 449 (532)
.+.+++.........+...|+++|+.+|++|+.+++++
T Consensus 44 -~~~~~t~~~~~~~~~e~~~a~~va~~~~~~~~~~~~~~ 81 (255)
T PF00733_consen 44 -PIKTFTIGFEDDDYDEREYARKVARHLGLEHHEIELDP 81 (255)
T ss_dssp -EEEEEEEECSSCC--HHHHHHHHHHHHT-EEEEEEE-H
T ss_pred -ceeEEEEEcCCCcchhHHHHHHHhcccccccceeeech
Confidence 46777776555555588889999999999999988876
No 91
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=98.03 E-value=6.5e-05 Score=82.74 Aligned_cols=101 Identities=22% Similarity=0.229 Sum_probs=58.8
Q ss_pred HHHhcchhhHHHHHHHHhCCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHh
Q 009550 329 EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREF 408 (532)
Q Consensus 329 ~~~~~~~~~~L~~~l~~~~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (532)
+++...+...++.+|... ..+.+-||||+|||++|+++.+ ...+..+ .......+.+
T Consensus 210 ~~lr~~L~~aV~~rl~sd--vpvGv~LSGGLDSSlIaala~~-------~~~~~~~--------~~~~~~~~~~------ 266 (554)
T PRK09431 210 NELRDALEAAVKKRLMSD--VPYGVLLSGGLDSSLISAIAKK-------YAARRIE--------DDERSEAWWP------ 266 (554)
T ss_pred HHHHHHHHHHHHHHhcCC--CceEEEcCCCccHHHHHHHHHH-------hhccccc--------ccccccccCC------
Confidence 345555555555555433 4788899999999999999842 1100000 0000000000
Q ss_pred hcceEEEEecCCCCCCHHhHHHHHHHHHHhCCceEEEecH--HHHHHHHHH
Q 009550 409 AKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSID--TVVSAFLSL 457 (532)
Q Consensus 409 ~~~~~~~~~~~~~~s~~~~~~~a~~la~~lg~~~~~i~i~--~~~~~~~~~ 457 (532)
.+++++.....+ .+...|+++|+.+|..|+++.++ +..+.+.+.
T Consensus 267 ---~l~tfsig~~~~--~D~~~A~~vA~~lg~~h~~v~~t~~e~~~~l~~v 312 (554)
T PRK09431 267 ---QLHSFAVGLEGS--PDLKAAREVADHLGTVHHEIHFTVQEGLDALRDV 312 (554)
T ss_pred ---CceEEEEeCCCC--ChHHHHHHHHHHhCCccEEEEeCHHHHHHHHHHH
Confidence 256665554333 36788999999999999999874 344444333
No 92
>PRK14561 hypothetical protein; Provisional
Probab=98.03 E-value=5.5e-05 Score=72.05 Aligned_cols=60 Identities=22% Similarity=0.145 Sum_probs=43.0
Q ss_pred eEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHHhHH
Q 009550 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRM 429 (532)
Q Consensus 350 ~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 429 (532)
++++++|||+||+++++++. . . . .+.+++.-... ..+.+
T Consensus 2 kV~ValSGG~DSslll~~l~--------~--------------~-~----------------~v~a~t~~~g~--~~e~~ 40 (194)
T PRK14561 2 KAGVLFSGGKDSSLAAILLE--------R--------------F-Y----------------DVELVTVNFGV--LDSWK 40 (194)
T ss_pred EEEEEEechHHHHHHHHHHH--------h--------------c-C----------------CeEEEEEecCc--hhHHH
Confidence 58999999999999877652 1 1 1 13334332212 24578
Q ss_pred HHHHHHHHhCCceEEEecHHH
Q 009550 430 LAKKLADEIGSWHLDVSIDTV 450 (532)
Q Consensus 430 ~a~~la~~lg~~~~~i~i~~~ 450 (532)
.|+++|+.+|++|+++++++-
T Consensus 41 ~a~~~a~~lGi~~~~v~~~~~ 61 (194)
T PRK14561 41 HAREAAKALGFPHRVLELDRE 61 (194)
T ss_pred HHHHHHHHhCCCEEEEECCHH
Confidence 899999999999999999863
No 93
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=97.98 E-value=3.2e-05 Score=86.93 Aligned_cols=133 Identities=21% Similarity=0.228 Sum_probs=74.8
Q ss_pred HhcchhhHHHHHHHHhCCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhc
Q 009550 331 IAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAK 410 (532)
Q Consensus 331 ~~~~~~~~L~~~l~~~~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (532)
+...+...++.+++.. ..+.+-||||+||+++|+++. + .+..
T Consensus 243 l~~~l~~aV~~rl~~d--~~vg~~LSGGlDSs~Iaa~~~-------~---------------~~~~-------------- 284 (628)
T TIGR03108 243 LIERLREAVRSRMVAD--VPLGAFLSGGVDSSAVVALMA-------G---------------LSDT-------------- 284 (628)
T ss_pred HHHHHHHHHHHHHhcC--CcceEeecCCccHHHHHHHHH-------H---------------hcCC--------------
Confidence 4444444444444432 467788999999999988873 1 1111
Q ss_pred ceEEEEecCCCCCCHHhHHHHHHHHHHhCCceEEEecHHHHHHHHHHhHhhhCCCCCcccCCCccccccchhhhhhhhhH
Q 009550 411 RIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRM 490 (532)
Q Consensus 411 ~~~~~~~~~~~~s~~~~~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~qaR~R~ 490 (532)
.+.++++....+...+...|+.+|+.+|++|+++.+++-. + +.+..+..... +.+...+.-+..+
T Consensus 285 -~i~t~s~~~~~~~~dE~~~A~~vA~~~g~~h~~~~~~~~~--~-~~~~~~~~~~~----------~P~~~~~~~~~~~- 349 (628)
T TIGR03108 285 -PVNTCSIAFDDPAFDESAYARQVAERYGTNHRVETVDPDD--F-SLVDRLAGLYD----------EPFADSSALPTYR- 349 (628)
T ss_pred -CCcEEEEecCCCCCChHHHHHHHHHHhCCCCeEEecCHHH--H-HHHHHHHHHhC----------CCCCCchHHHHHH-
Confidence 2444444332333356678999999999999999887532 1 22222211100 1122223323221
Q ss_pred HHHHHHhhcCccccCCCCcEEEEcCCCccccccccc
Q 009550 491 VLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYL 526 (532)
Q Consensus 491 ~~l~~~a~~~~~~~~~~~~~lvlgT~n~sE~~~Gy~ 526 (532)
++. .+.+ +..++|+....+|...||-
T Consensus 350 -----~~~----~a~~-~~kV~LsG~GgDElf~GY~ 375 (628)
T TIGR03108 350 -----VCE----LARK-RVTVALSGDGGDELFAGYR 375 (628)
T ss_pred -----HHH----HHHC-CCCEEEeccchhhcccCcH
Confidence 111 1122 2358888888899999994
No 94
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=97.96 E-value=1.7e-05 Score=75.42 Aligned_cols=60 Identities=18% Similarity=0.169 Sum_probs=42.8
Q ss_pred eEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCC------
Q 009550 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENS------ 423 (532)
Q Consensus 350 ~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s------ 423 (532)
++++++|||.||++++.++. + .|. .++++++-+...
T Consensus 1 kv~v~~SGGkDS~~al~~a~-------~---------------~G~----------------~v~~l~~~~~~~~~~~~~ 42 (194)
T cd01994 1 KVVALISGGKDSCYALYRAL-------E---------------EGH----------------EVVALLNLTPEEGSSMMY 42 (194)
T ss_pred CEEEEecCCHHHHHHHHHHH-------H---------------cCC----------------EEEEEEEEecCCCCcccc
Confidence 47899999999999777662 1 342 255655443222
Q ss_pred CHHhHHHHHHHHHHhCCceEEEec
Q 009550 424 SQETRMLAKKLADEIGSWHLDVSI 447 (532)
Q Consensus 424 ~~~~~~~a~~la~~lg~~~~~i~i 447 (532)
.....+.++++|+.+|++|+.+++
T Consensus 43 h~~~~e~~~~~A~~lgipl~~i~~ 66 (194)
T cd01994 43 HTVNHELLELQAEAMGIPLIRIEI 66 (194)
T ss_pred cccCHHHHHHHHHHcCCcEEEEeC
Confidence 123678899999999999999986
No 95
>PLN00200 argininosuccinate synthase; Provisional
Probab=97.89 E-value=3.9e-05 Score=80.47 Aligned_cols=65 Identities=15% Similarity=0.113 Sum_probs=50.4
Q ss_pred CeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHHhH
Q 009550 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (532)
Q Consensus 349 ~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 428 (532)
++++|++|||+||++++.++ .+. ++. .|+++++.... ...+.
T Consensus 6 ~kVvva~SGGlDSsvla~~L-------~e~--------------~G~----------------eViav~id~Gq-~~~el 47 (404)
T PLN00200 6 NKVVLAYSGGLDTSVILKWL-------REN--------------YGC----------------EVVCFTADVGQ-GIEEL 47 (404)
T ss_pred CeEEEEEeCCHHHHHHHHHH-------HHh--------------hCC----------------eEEEEEEECCC-ChHHH
Confidence 58999999999999987776 222 343 38899887653 44688
Q ss_pred HHHHHHHHHhCCce-EEEecHHHH
Q 009550 429 MLAKKLADEIGSWH-LDVSIDTVV 451 (532)
Q Consensus 429 ~~a~~la~~lg~~~-~~i~i~~~~ 451 (532)
++|+++|+.+|+++ +++|+.+.|
T Consensus 48 ~~a~~~A~~lGi~~~~v~dl~~ef 71 (404)
T PLN00200 48 EGLEAKAKASGAKQLVVKDLREEF 71 (404)
T ss_pred HHHHHHHHHcCCCEEEEEeCHHHH
Confidence 99999999999985 777877554
No 96
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=97.85 E-value=0.00011 Score=76.90 Aligned_cols=59 Identities=22% Similarity=0.190 Sum_probs=45.8
Q ss_pred CeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHHhH
Q 009550 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (532)
Q Consensus 349 ~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 428 (532)
.++++++|||+||+++|.++. + .|. .|.+|++- +++.+.
T Consensus 181 gkvlvllSGGiDSpVAa~ll~-------k---------------rG~----------------~V~~v~f~---~g~~~~ 219 (381)
T PRK08384 181 GKVVALLSGGIDSPVAAFLMM-------K---------------RGV----------------EVIPVHIY---MGEKTL 219 (381)
T ss_pred CcEEEEEeCChHHHHHHHHHH-------H---------------cCC----------------eEEEEEEE---eCHHHH
Confidence 579999999999999877762 1 354 38888884 447788
Q ss_pred HHHHHHHHHhC-------CceEEEecH
Q 009550 429 MLAKKLADEIG-------SWHLDVSID 448 (532)
Q Consensus 429 ~~a~~la~~lg-------~~~~~i~i~ 448 (532)
+.++++|+.|+ ++++.++..
T Consensus 220 e~v~~la~~L~~~~~~~~i~l~~v~~~ 246 (381)
T PRK08384 220 EKVRKIWNQLKKYHYGGKAELIVVKPQ 246 (381)
T ss_pred HHHHHHHHHhcccccCCcceEEEEChH
Confidence 99999999999 446677664
No 97
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=97.83 E-value=4.8e-05 Score=79.89 Aligned_cols=63 Identities=21% Similarity=0.183 Sum_probs=49.4
Q ss_pred eEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHHhHH
Q 009550 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRM 429 (532)
Q Consensus 350 ~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 429 (532)
+++|++|||+||++++.++ ++ .+. .|+++++... .+..+.+
T Consensus 1 kVvla~SGGlDSsvll~~l--------~e--------------~g~----------------~V~av~id~G-q~~~e~~ 41 (394)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWL--------RE--------------KGY----------------EVIAYTADVG-QPEEDID 41 (394)
T ss_pred CEEEEEcCCHHHHHHHHHH--------HH--------------cCC----------------EEEEEEEecC-CChHHHH
Confidence 4899999999999987776 22 232 4889988754 3367888
Q ss_pred HHHHHHHHhCC-ceEEEecHHHH
Q 009550 430 LAKKLADEIGS-WHLDVSIDTVV 451 (532)
Q Consensus 430 ~a~~la~~lg~-~~~~i~i~~~~ 451 (532)
.++++|+.+|+ +|+++|+++.|
T Consensus 42 ~a~~~a~~lGi~~~~viD~~~ef 64 (394)
T TIGR00032 42 AIPEKALEYGAENHYTIDAREEF 64 (394)
T ss_pred HHHHHHHHhCCCeEEEEeCHHHH
Confidence 99999999998 79999997533
No 98
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=97.79 E-value=0.00016 Score=68.04 Aligned_cols=62 Identities=19% Similarity=0.299 Sum_probs=46.5
Q ss_pred eEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCC--HHh
Q 009550 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSS--QET 427 (532)
Q Consensus 350 ~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~ 427 (532)
++++++|||+||++++.++. +... ..+ . .+.++++...... +.+
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~-------~~~~-----------~~~-~---------------~v~~v~id~~~~~~~~~~ 46 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLS-------ELKP-----------RLG-L---------------RLVAVHVDHGLRPESDEE 46 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHH-------HHHH-----------HcC-C---------------cEEEEEecCCCCchHHHH
Confidence 47999999999999888872 2210 011 1 3788888765433 578
Q ss_pred HHHHHHHHHHhCCceEEE
Q 009550 428 RMLAKKLADEIGSWHLDV 445 (532)
Q Consensus 428 ~~~a~~la~~lg~~~~~i 445 (532)
.+.+.++|+.+|++++++
T Consensus 47 ~~~~~~~~~~~~i~~~~~ 64 (185)
T cd01992 47 AAFVADLCAKLGIPLYIL 64 (185)
T ss_pred HHHHHHHHHHcCCcEEEE
Confidence 899999999999999988
No 99
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=97.76 E-value=8e-05 Score=68.51 Aligned_cols=68 Identities=18% Similarity=0.235 Sum_probs=53.0
Q ss_pred eEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHHhHH
Q 009550 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRM 429 (532)
Q Consensus 350 ~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 429 (532)
.++|++|||.||++++.|+. ++ .... ..+..+++.+....+++.+
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~-------~~--------------~~~~--------------~~~~~v~~dtg~~~~~~~~ 45 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLAL-------KA--------------LPEL--------------KPVPVIFLDTGYEFPETYE 45 (173)
T ss_pred CeEEEecCChHHHHHHHHHH-------Hh--------------cccc--------------cCceEEEeCCCCCCHHHHH
Confidence 47899999999999888873 22 1100 0367888887777888999
Q ss_pred HHHHHHHHhCCceEEEecHHHHH
Q 009550 430 LAKKLADEIGSWHLDVSIDTVVS 452 (532)
Q Consensus 430 ~a~~la~~lg~~~~~i~i~~~~~ 452 (532)
.++++++.+|++++.+..+....
T Consensus 46 ~~~~~~~~~g~~~~~~~~~~~~~ 68 (173)
T cd01713 46 FVDRVAERYGLPLVVVRPPDSPA 68 (173)
T ss_pred HHHHHHHHhCCCeEEECCCccHH
Confidence 99999999999999998876544
No 100
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=97.72 E-value=0.00015 Score=80.67 Aligned_cols=81 Identities=20% Similarity=0.166 Sum_probs=54.6
Q ss_pred HHhcchhhHHHHHHHHhCCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhh
Q 009550 330 EIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFA 409 (532)
Q Consensus 330 ~~~~~~~~~L~~~l~~~~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (532)
++...+...++.+++.. ..+.+-||||+||+++|+++. + .+..
T Consensus 244 ~l~~~L~~AV~~rl~sd--~pvg~~LSGGlDSs~Iaa~~~-------~---------------~~~~------------- 286 (589)
T TIGR03104 244 AILEALRLAVKRRLVAD--VPVGVLLSGGLDSSLIVGLLA-------E---------------AGVD------------- 286 (589)
T ss_pred HHHHHHHHHHHHHhhcC--CceeEEecCCccHHHHHHHHH-------H---------------hcCC-------------
Confidence 44555555556666433 578899999999999988873 1 2211
Q ss_pred cceEEEEecCCCCCC---HHhHHHHHHHHHHhCCceEEEecHH
Q 009550 410 KRIFYTVFMGSENSS---QETRMLAKKLADEIGSWHLDVSIDT 449 (532)
Q Consensus 410 ~~~~~~~~~~~~~s~---~~~~~~a~~la~~lg~~~~~i~i~~ 449 (532)
.+.|+++....++ -.+...|+++|+.+|.+|+++.+++
T Consensus 287 --~l~tftigf~~~~~~~~dE~~~A~~vA~~~g~~h~~i~~~~ 327 (589)
T TIGR03104 287 --GLRTFSIGFEDVGGEKGDEFEYSDIIAERFHTRHHKIRIPN 327 (589)
T ss_pred --CceEEEEEecCCCCCCCChHHHHHHHHHHhCCcCeEEEcCH
Confidence 2556655433331 2456789999999999999998864
No 101
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=97.70 E-value=9e-05 Score=77.58 Aligned_cols=64 Identities=22% Similarity=0.261 Sum_probs=48.2
Q ss_pred EEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHHhHHH
Q 009550 351 FLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRML 430 (532)
Q Consensus 351 ~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 430 (532)
++|++|||+||++++.++ .+. .+ . .|+++++...... ...+.
T Consensus 1 Vvva~SGGlDSsvll~~l-------~e~--------------~~-~---------------eV~av~~d~Gq~~-~~~e~ 42 (385)
T cd01999 1 VVLAYSGGLDTSVILKWL-------KEK--------------GG-Y---------------EVIAVTADVGQPE-EEIEA 42 (385)
T ss_pred CEEEecCCHHHHHHHHHH-------HHh--------------CC-C---------------eEEEEEEECCCcc-hhHHH
Confidence 589999999999987776 222 22 1 4888888765432 33488
Q ss_pred HHHHHHHhCCc-eEEEecHHHHH
Q 009550 431 AKKLADEIGSW-HLDVSIDTVVS 452 (532)
Q Consensus 431 a~~la~~lg~~-~~~i~i~~~~~ 452 (532)
|+++|+.+|++ |+++|+++.+.
T Consensus 43 a~~~a~~lG~~~~~viD~~~ef~ 65 (385)
T cd01999 43 IEEKALKLGAKKHVVVDLREEFV 65 (385)
T ss_pred HHHHHHHcCCCEEEEeccHHHHH
Confidence 99999999996 99999987554
No 102
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=97.68 E-value=0.00016 Score=75.84 Aligned_cols=68 Identities=26% Similarity=0.285 Sum_probs=52.2
Q ss_pred CeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCC-CCCHHh
Q 009550 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSE-NSSQET 427 (532)
Q Consensus 349 ~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~ 427 (532)
.++++++|||+||++++.++. + .|. .|+++++.+. .+++.+
T Consensus 173 ~kvlvllSGGiDS~vaa~ll~-------k---------------rG~----------------~V~av~~~~~~~~~~~~ 214 (371)
T TIGR00342 173 GKVLALLSGGIDSPVAAFMMM-------K---------------RGC----------------RVVAVHFFNEPAASEKA 214 (371)
T ss_pred CeEEEEecCCchHHHHHHHHH-------H---------------cCC----------------eEEEEEEeCCCCccHHH
Confidence 589999999999999877762 1 342 4889998864 455678
Q ss_pred HHHHHHHHHHh---C--CceEEEecHHHHHHH
Q 009550 428 RMLAKKLADEI---G--SWHLDVSIDTVVSAF 454 (532)
Q Consensus 428 ~~~a~~la~~l---g--~~~~~i~i~~~~~~~ 454 (532)
.+.++.+|+.+ + ++++.+|+.+.++.+
T Consensus 215 ~~~v~~l~~~l~~~~~~~~l~~v~~~~~~~~i 246 (371)
T TIGR00342 215 REKVERLANSLNETGGSVKLYVFDFTDVQEEI 246 (371)
T ss_pred HHHHHHHHHHHhhcCCCceEEEEeCHHHHHHH
Confidence 88999999988 3 578899998866544
No 103
>PRK08349 hypothetical protein; Validated
Probab=97.67 E-value=0.00032 Score=66.97 Aligned_cols=59 Identities=19% Similarity=0.202 Sum_probs=40.7
Q ss_pred eEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHHhHH
Q 009550 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRM 429 (532)
Q Consensus 350 ~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 429 (532)
++++++|||+||+++|.++. . .|. .|+++++-. .....+
T Consensus 2 ~~vvllSGG~DS~v~~~~l~--------~--------------~g~----------------~v~av~~d~---~~~~~~ 40 (198)
T PRK08349 2 KAVALLSSGIDSPVAIYLML--------R--------------RGV----------------EVYPVHFRQ---DEKKEE 40 (198)
T ss_pred cEEEEccCChhHHHHHHHHH--------H--------------cCC----------------eEEEEEEeC---CHHHHH
Confidence 67899999999999877762 1 343 488888864 345566
Q ss_pred HHHHHHHHh----CCce---EEEecHH
Q 009550 430 LAKKLADEI----GSWH---LDVSIDT 449 (532)
Q Consensus 430 ~a~~la~~l----g~~~---~~i~i~~ 449 (532)
.++++|+.+ |++| ..+++.+
T Consensus 41 ~~~~~~~~l~~~~~~~~~~~~~v~~~~ 67 (198)
T PRK08349 41 KVRELVERLQELHGGKLKDPVVVDAFE 67 (198)
T ss_pred HHHHHHHHHHHhcCCCcceEEEEcchH
Confidence 677776666 4876 4555543
No 104
>PRK08576 hypothetical protein; Provisional
Probab=97.60 E-value=0.00027 Score=75.00 Aligned_cols=70 Identities=21% Similarity=0.311 Sum_probs=53.9
Q ss_pred HHHHHHHHhCCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEe
Q 009550 338 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVF 417 (532)
Q Consensus 338 ~L~~~l~~~~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (532)
-..+++++.+-.++++++|||.||++++.++. ++ .+ .+.+++
T Consensus 224 ~~~~~Lr~~~~~rVvVafSGGKDStvLL~La~-------k~--------------~~-----------------~V~aV~ 265 (438)
T PRK08576 224 ASIKFLRKFEEWTVIVPWSGGKDSTAALLLAK-------KA--------------FG-----------------DVTAVY 265 (438)
T ss_pred HHHHHHHHcCCCCEEEEEcChHHHHHHHHHHH-------Hh--------------CC-----------------CCEEEE
Confidence 34455666655689999999999999877762 32 21 267788
Q ss_pred cCCCCCCHHhHHHHHHHHHHhCCceEEE
Q 009550 418 MGSENSSQETRMLAKKLADEIGSWHLDV 445 (532)
Q Consensus 418 ~~~~~s~~~~~~~a~~la~~lg~~~~~i 445 (532)
+.+....+.+.+.++++|+.+|+++++.
T Consensus 266 iDTG~e~pet~e~~~~lae~LGI~lii~ 293 (438)
T PRK08576 266 VDTGYEMPLTDEYVEKVAEKLGVDLIRA 293 (438)
T ss_pred eCCCCCChHHHHHHHHHHHHcCCCEEEc
Confidence 8876677889999999999999999883
No 105
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=97.58 E-value=0.00047 Score=64.90 Aligned_cols=66 Identities=21% Similarity=0.286 Sum_probs=42.0
Q ss_pred eEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecC--CCCCCHHh
Q 009550 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMG--SENSSQET 427 (532)
Q Consensus 350 ~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~ 427 (532)
+++||+|||.||++++.++.. - . +.... .+.++++. ....+...
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~-------~-~-----------~~~~~---------------~~~~~~vdh~~~~~s~~~ 46 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKE-------L-R-----------RRNGI---------------KLIAVHVDHGLREESDEE 46 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHH-------H-H-----------TTTTT---------------EEEEEEEE-STSCCHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHH-------H-H-----------HhcCC---------------CeEEEEEecCCCcccchh
Confidence 589999999999987777632 1 0 01111 35555543 33456677
Q ss_pred HHHHHHHHHHhCCceEEEecHH
Q 009550 428 RMLAKKLADEIGSWHLDVSIDT 449 (532)
Q Consensus 428 ~~~a~~la~~lg~~~~~i~i~~ 449 (532)
....+++|+.+|++++..+++.
T Consensus 47 ~~~v~~~~~~~~i~~~~~~~~~ 68 (182)
T PF01171_consen 47 AEFVEEICEQLGIPLYIVRIDE 68 (182)
T ss_dssp HHHHHHHHHHTT-EEEEEE--C
T ss_pred HHHHHHHHHhcCCceEEEEeee
Confidence 7889999999999999999976
No 106
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]
Probab=97.56 E-value=0.00026 Score=69.07 Aligned_cols=76 Identities=26% Similarity=0.382 Sum_probs=53.6
Q ss_pred hCCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCC-C
Q 009550 346 SGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENS-S 424 (532)
Q Consensus 346 ~~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~ 424 (532)
-|..++++|||||+|||++|.|+ .+| +| + ++++++...-.- .
T Consensus 19 vg~~kvi~alSGGVDSsv~a~L~-------~~A--------------iG-d---------------~l~cvfVD~GLlR~ 61 (315)
T COG0519 19 VGDGKVILALSGGVDSSVAAVLA-------HRA--------------IG-D---------------QLTCVFVDHGLLRK 61 (315)
T ss_pred hCCceEEEEecCCCcHHHHHHHH-------HHH--------------hh-c---------------ceEEEEecCCcccC
Confidence 45679999999999999999888 467 44 2 588998875433 3
Q ss_pred HHhHHHHHHHHHHhCCceEEEecHHHHHHHHHHhHhh
Q 009550 425 QETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTL 461 (532)
Q Consensus 425 ~~~~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~~~ 461 (532)
.+...-..-+.+.+|+++..+|-.+ .|.+.++.+
T Consensus 62 ~E~e~V~~~f~~~~~~nl~~VdA~~---~Fl~~L~Gv 95 (315)
T COG0519 62 GEAEQVVEMFREHLGLNLIVVDAKD---RFLSALKGV 95 (315)
T ss_pred CcHHHHHHHHHhhcCCceEEEchHH---HHHHHhcCC
Confidence 3333444456667999999987754 566666543
No 107
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=97.47 E-value=0.00025 Score=66.44 Aligned_cols=62 Identities=21% Similarity=0.090 Sum_probs=40.0
Q ss_pred eEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHH---
Q 009550 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQE--- 426 (532)
Q Consensus 350 ~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--- 426 (532)
++++++|||+||+++|.++. + .|. +++++++.....+..
T Consensus 1 ~vlv~~SGG~DS~~la~ll~-------~---------------~g~----------------~v~av~~d~g~~~~~~~~ 42 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLM-------K---------------RGI----------------EVDALHFNSGPFTSEKAR 42 (177)
T ss_pred CEEEEecCChhHHHHHHHHH-------H---------------cCC----------------eEEEEEEeCCCCCchHHH
Confidence 47899999999999888872 1 332 478888875543332
Q ss_pred -hHHHHHHHHHHhCCceE--EEecHH
Q 009550 427 -TRMLAKKLADEIGSWHL--DVSIDT 449 (532)
Q Consensus 427 -~~~~a~~la~~lg~~~~--~i~i~~ 449 (532)
....+.+.+..+++.|. +++.++
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~v~~~~ 68 (177)
T cd01712 43 EKVEDLARKLARYSPGHKLVVIIFTF 68 (177)
T ss_pred HHHHHHHHHHHHhCCCCceEEEeCcH
Confidence 23444445566777764 555543
No 108
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=97.43 E-value=0.00078 Score=62.49 Aligned_cols=62 Identities=23% Similarity=0.213 Sum_probs=44.1
Q ss_pred eEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHHhHH
Q 009550 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRM 429 (532)
Q Consensus 350 ~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 429 (532)
++++++|||+||++++.++. + .+. .++++++.....+..+.+
T Consensus 1 kvlv~~SGG~DS~~~~~~~~-------~---------------~~~----------------~v~~~~~~~~~~~~~~~~ 42 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAK-------K---------------EGY----------------EVHALSFDYGQRHAKEEE 42 (169)
T ss_pred CEEEEecCcHHHHHHHHHHH-------H---------------cCC----------------cEEEEEEECCCCChhHHH
Confidence 47899999999999777762 1 232 267777764434455668
Q ss_pred HHHHHHHHhCCceEEEecHHH
Q 009550 430 LAKKLADEIGSWHLDVSIDTV 450 (532)
Q Consensus 430 ~a~~la~~lg~~~~~i~i~~~ 450 (532)
.++++|+.+| ++..++....
T Consensus 43 ~~~~~~~~~g-~~~~~~~~~~ 62 (169)
T cd01995 43 AAKLIAEKLG-PSTYVPARNL 62 (169)
T ss_pred HHHHHHHHHC-CCEEEeCcCH
Confidence 8999999999 6666665543
No 109
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=97.42 E-value=0.00046 Score=66.93 Aligned_cols=24 Identities=13% Similarity=0.148 Sum_probs=21.2
Q ss_pred HHhHHHHHHHHHHhCCceEEEecH
Q 009550 425 QETRMLAKKLADEIGSWHLDVSID 448 (532)
Q Consensus 425 ~~~~~~a~~la~~lg~~~~~i~i~ 448 (532)
....+.++.+|+.+|++|++++++
T Consensus 42 ~~~~~~~~~~A~~lgip~~~i~~~ 65 (218)
T TIGR03679 42 TPNIELTRLQAEALGIPLVKIETS 65 (218)
T ss_pred CCCHHHHHHHHHHhCCCEEEEECC
Confidence 446788999999999999999987
No 110
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=97.38 E-value=0.0013 Score=65.65 Aligned_cols=68 Identities=18% Similarity=0.115 Sum_probs=45.0
Q ss_pred CeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHHhH
Q 009550 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (532)
Q Consensus 349 ~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 428 (532)
++++||+|||.||++++.++..+ .+. .+.. -.+.+++...... ..+.
T Consensus 30 ~kilVa~SGG~DS~~LL~ll~~l----~~~--------------~~~~--------------~~l~av~vd~g~~-~~~~ 76 (258)
T PRK10696 30 DRVMVCLSGGKDSYTLLDILLNL----QKR--------------APIN--------------FELVAVNLDQKQP-GFPE 76 (258)
T ss_pred CEEEEEecCCHHHHHHHHHHHHH----HHh--------------CCCC--------------eEEEEEEecCCCC-CCCH
Confidence 58999999999999887776321 000 1100 0377877653222 2233
Q ss_pred HHHHHHHHHhCCceEEEecHH
Q 009550 429 MLAKKLADEIGSWHLDVSIDT 449 (532)
Q Consensus 429 ~~a~~la~~lg~~~~~i~i~~ 449 (532)
+.++++|+.+|++|++++++.
T Consensus 77 ~~~~~~~~~lgI~~~v~~~~~ 97 (258)
T PRK10696 77 HVLPEYLESLGVPYHIEEQDT 97 (258)
T ss_pred HHHHHHHHHhCCCEEEEEecc
Confidence 467899999999999998753
No 111
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=97.37 E-value=0.0016 Score=71.67 Aligned_cols=135 Identities=23% Similarity=0.236 Sum_probs=76.1
Q ss_pred HHHhcchhhHHHHHHHHhCCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHh
Q 009550 329 EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREF 408 (532)
Q Consensus 329 ~~~~~~~~~~L~~~l~~~~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (532)
+++...+...+..+++. -..+.+-||||+|||++|+++. +. ....
T Consensus 213 ~~l~~~l~~sV~~r~~a--dvpvg~~lSGGlDSS~Iaa~a~-------~~--------------~~~~------------ 257 (542)
T COG0367 213 EHLRSLLEDAVKRRLVA--DVPVGVFLSGGLDSSLIAAIAA-------EE--------------LGKE------------ 257 (542)
T ss_pred HHHHHHHHHHHHHHhcc--CCcEEEEeCCCccHHHHHHHHH-------Hh--------------cccc------------
Confidence 34455444444444422 3578888999999999999983 22 1111
Q ss_pred hcceE--EEEecCCCCCCHHhHHHHHHHHHHhCCceEEEecHHHHHHHHHHhHhhhCCCCCcccCCCccccccchhhhhh
Q 009550 409 AKRIF--YTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQA 486 (532)
Q Consensus 409 ~~~~~--~~~~~~~~~s~~~~~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~qa 486 (532)
.. +++-++ .+...+...|+++|+.||.+|+.+.+.+ +.+...+.++....+ ..+. +.+
T Consensus 258 ---~~~~fsvg~~--~~~~~D~~~a~~~A~~lg~~h~~~~~~~--~e~~~~~~~vv~~~~---------~p~~----~~~ 317 (542)
T COG0367 258 ---GKTTFTVGFE--DSDSPDAKYARAVAKFLGTPHHEIILTN--EELLNALPEVVKALD---------TPGG----MAA 317 (542)
T ss_pred ---ceeeeEeecC--CCCCchHHHHHHHHHHhCCCcEEEeecH--HHHHHHHHHHHhhcC---------CCCc----ccc
Confidence 11 244444 3434577889999999999998877653 344444554433221 0111 111
Q ss_pred hhhHHHHHHHhhcCccccCCCCcEEEEcCCCcccccccc
Q 009550 487 RIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGY 525 (532)
Q Consensus 487 R~R~~~l~~~a~~~~~~~~~~~~~lvlgT~n~sE~~~Gy 525 (532)
..-+|.+++. +.+.|-.+||.=--.+|..-||
T Consensus 318 ---~~ply~~~~~----a~~~g~kVvLSGeGADElFgGY 349 (542)
T COG0367 318 ---SIPLYLLSRK----ARAEGEKVVLSGEGADELFGGY 349 (542)
T ss_pred ---hhHHHHHHHh----hhhcCcEEeecCccHHHHhcCC
Confidence 1234545442 3444533555434458899999
No 112
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=97.21 E-value=0.0008 Score=63.90 Aligned_cols=71 Identities=21% Similarity=0.212 Sum_probs=48.1
Q ss_pred CeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecC-CCCCCHHh
Q 009550 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMG-SENSSQET 427 (532)
Q Consensus 349 ~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~ 427 (532)
.+++.-||||+||.+.+.++. +.|. .|++|++- .+++++..
T Consensus 4 gk~l~LlSGGiDSpVAa~lm~----------------------krG~----------------~V~~l~f~~~~~~~~~~ 45 (197)
T PF02568_consen 4 GKALALLSGGIDSPVAAWLMM----------------------KRGC----------------EVIALHFDSPPFTGEKA 45 (197)
T ss_dssp -EEEEE-SSCCHHHHHHHHHH----------------------CBT-----------------EEEEEEEE-TTTSSCCC
T ss_pred ceEEEEecCCccHHHHHHHHH----------------------HCCC----------------EEEEEEEECCCCCCHHH
Confidence 468888999999999776662 1343 48888885 34566666
Q ss_pred HHHHHHHHHHh-------CCceEEEecHHHHHHHHHH
Q 009550 428 RMLAKKLADEI-------GSWHLDVSIDTVVSAFLSL 457 (532)
Q Consensus 428 ~~~a~~la~~l-------g~~~~~i~i~~~~~~~~~~ 457 (532)
.+.++++++.+ .++++.+|+.+.+..+...
T Consensus 46 ~~k~~~l~~~l~~~~~~~~~~l~~v~~~~~~~~i~~~ 82 (197)
T PF02568_consen 46 REKVEELAEKLSEYSPGHKIRLYVVDFTEVQKEILRG 82 (197)
T ss_dssp HHHHHHHHHHHHCCSTTS-EEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcceeEEEECcHHHHHHHHhc
Confidence 67777776665 3678889998877665443
No 113
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.20 E-value=0.0018 Score=65.78 Aligned_cols=64 Identities=22% Similarity=0.304 Sum_probs=47.6
Q ss_pred CeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhcc-CCCCCCCCChHHhhcceEEEEecCCCC--CCH
Q 009550 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGH-YANGEFPTDSREFAKRIFYTVFMGSEN--SSQ 425 (532)
Q Consensus 349 ~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~ 425 (532)
.+++||+|||.||++++.++. . +.. . .+.+++..-.. .+.
T Consensus 22 ~~ilVavSGGkDS~~ll~~L~--------~--------------l~~~~---------------~~~a~~Vd~~~~~~~~ 64 (298)
T COG0037 22 YKILVAVSGGKDSLALLHLLK--------E--------------LGRRI---------------EVEAVHVDHGLRGYSD 64 (298)
T ss_pred CeEEEEeCCChHHHHHHHHHH--------H--------------hccCc---------------eEEEEEecCCCCCccc
Confidence 799999999999999877762 2 221 1 35666655322 347
Q ss_pred HhHHHHHHHHHHhCCceEEEecHH
Q 009550 426 ETRMLAKKLADEIGSWHLDVSIDT 449 (532)
Q Consensus 426 ~~~~~a~~la~~lg~~~~~i~i~~ 449 (532)
.....++.+|+.+|+++.+.++++
T Consensus 65 ~~~~~~~~~~~~~~~~~~v~~~~~ 88 (298)
T COG0037 65 QEAELVEKLCEKLGIPLIVERVTD 88 (298)
T ss_pred hHHHHHHHHHHHhCCceEEEEEEe
Confidence 788889999999999999988864
No 114
>PRK13794 hypothetical protein; Provisional
Probab=97.18 E-value=0.0024 Score=69.09 Aligned_cols=76 Identities=16% Similarity=0.175 Sum_probs=58.6
Q ss_pred hhhHHHHHHHHhCCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEE
Q 009550 335 PGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFY 414 (532)
Q Consensus 335 ~~~~L~~~l~~~~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (532)
-..+|+..+.+.+ ..+++++|||.||++++.|+ .++ ++. .+.
T Consensus 235 a~~~i~~~~~~~~-~~v~vs~SGGKDS~v~L~L~-------~~~--------------~~~----------------~~~ 276 (479)
T PRK13794 235 SIGFIRNTAEKIN-KPVTVAYSGGKDSLATLLLA-------LKA--------------LGI----------------NFP 276 (479)
T ss_pred HHHHHHHHHHhcC-CCEEEEecchHHHHHHHHHH-------HHH--------------hCC----------------CeE
Confidence 3456666665544 67999999999999988887 243 221 367
Q ss_pred EEecCCCCCCHHhHHHHHHHHHHhCCceEEEecH
Q 009550 415 TVFMGSENSSQETRMLAKKLADEIGSWHLDVSID 448 (532)
Q Consensus 415 ~~~~~~~~s~~~~~~~a~~la~~lg~~~~~i~i~ 448 (532)
.+++-+....++|.+.++++++.+|++++.+..+
T Consensus 277 vvfiDTG~efpet~e~i~~~~~~~gl~i~~~~~~ 310 (479)
T PRK13794 277 VLFNDTGLEFPETLENVEDVEKHYGLEIIRTKSE 310 (479)
T ss_pred EEEEECCCCChHHHHHHHHHHHhcCCcEEEEchH
Confidence 7888777777899999999999999999998765
No 115
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=97.17 E-value=0.0028 Score=64.38 Aligned_cols=77 Identities=18% Similarity=0.080 Sum_probs=55.7
Q ss_pred hHHHHHHHHhCCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEE
Q 009550 337 CWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTV 416 (532)
Q Consensus 337 ~~L~~~l~~~~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (532)
.-|+..+.+. .++++++|||.||++++.|+ .+++. -... .+..+
T Consensus 18 ~iLrea~~~f--~~~vv~~SGGKDS~VLL~La-------~ka~~------------~~~~---------------~~~vl 61 (301)
T PRK05253 18 HILREVAAEF--ENPVMLYSIGKDSSVMLHLA-------RKAFY------------PGKL---------------PFPLL 61 (301)
T ss_pred HHHHHHHHhC--CCEEEEecCCHHHHHHHHHH-------HHhhc------------ccCC---------------CeeEE
Confidence 3455555553 68999999999999988888 34421 0010 25566
Q ss_pred ecCCCCCCHHhHHHHHHHHHHhCCceEEEecHH
Q 009550 417 FMGSENSSQETRMLAKKLADEIGSWHLDVSIDT 449 (532)
Q Consensus 417 ~~~~~~s~~~~~~~a~~la~~lg~~~~~i~i~~ 449 (532)
+..+....+++.+.+.++|+.+|++++++..++
T Consensus 62 ~iDTG~~FpEt~ef~d~~a~~~gl~l~v~~~~~ 94 (301)
T PRK05253 62 HVDTGWKFPEMIEFRDRRAKELGLELIVHSNPE 94 (301)
T ss_pred EEeCCCCCHHHHHHHHHHHHHhCCCEEEEeChH
Confidence 776666668899999999999999999987654
No 116
>PRK13795 hypothetical protein; Provisional
Probab=97.13 E-value=0.0021 Score=72.10 Aligned_cols=83 Identities=18% Similarity=0.161 Sum_probs=61.7
Q ss_pred HHhcchhhHHHHHHHHhCCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhh
Q 009550 330 EIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFA 409 (532)
Q Consensus 330 ~~~~~~~~~L~~~l~~~~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (532)
++......+|+..+.+. -..+++++|||.||++++.|+. ++ .+
T Consensus 226 ~~~~~ai~~Ir~~~~~~-~~~v~Va~SGGKDS~vll~L~~-------~a--------------~~--------------- 268 (636)
T PRK13795 226 EKEKEAVNFIRGVAEKY-NLPVSVSFSGGKDSLVVLDLAR-------EA--------------LK--------------- 268 (636)
T ss_pred HHHHHHHHHHHHHHHHc-CCCEEEEecCcHHHHHHHHHHH-------Hh--------------CC---------------
Confidence 33344446677777665 3579999999999999888872 33 11
Q ss_pred cceEEEEecCCCCCCHHhHHHHHHHHHHhCCceEEEecHHHH
Q 009550 410 KRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVV 451 (532)
Q Consensus 410 ~~~~~~~~~~~~~s~~~~~~~a~~la~~lg~~~~~i~i~~~~ 451 (532)
.+..++..+....++|.+.++++++.+|+++++++.++.+
T Consensus 269 --~~~vvfiDTg~efpet~e~v~~~~~~~gi~i~~~~~~~~f 308 (636)
T PRK13795 269 --DFKAFFNNTGLEFPETVENVKEVAEEYGIELIEADAGDAF 308 (636)
T ss_pred --CcEEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEcccHhH
Confidence 2456777776677889999999999999999999886433
No 117
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=97.03 E-value=0.0019 Score=69.23 Aligned_cols=76 Identities=14% Similarity=0.107 Sum_probs=51.0
Q ss_pred HHHHHHHHhCCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEe
Q 009550 338 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVF 417 (532)
Q Consensus 338 ~L~~~l~~~~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (532)
.|.+.+++. ++++||+|||+||++++.++..+ .+. ..+. .+++++
T Consensus 7 ~l~~~l~~~--~~ilvavSGG~DS~~Ll~~l~~~----~~~-------------~~~~----------------~l~a~h 51 (436)
T PRK10660 7 TLNRQLLTS--RQILVAFSGGLDSTVLLHLLVQW----RTE-------------NPGV----------------TLRAIH 51 (436)
T ss_pred HHHHhcCCC--CeEEEEecCCHHHHHHHHHHHHH----HHh-------------cCCC----------------eEEEEE
Confidence 345555543 68999999999999877776311 000 0111 377777
Q ss_pred cCCC--CCCHHhHHHHHHHHHHhCCceEEEecH
Q 009550 418 MGSE--NSSQETRMLAKKLADEIGSWHLDVSID 448 (532)
Q Consensus 418 ~~~~--~s~~~~~~~a~~la~~lg~~~~~i~i~ 448 (532)
..-. ..++...+.++++|+.+|+++++++++
T Consensus 52 vnhglr~~s~~~~~~~~~~~~~l~i~~~~~~~~ 84 (436)
T PRK10660 52 VHHGLSPNADSWVKHCEQVCQQWQVPLVVERVQ 84 (436)
T ss_pred EeCCCCcchHHHHHHHHHHHHHcCCcEEEEEEe
Confidence 7632 234555678899999999999998775
No 118
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=96.82 E-value=0.0063 Score=59.99 Aligned_cols=74 Identities=18% Similarity=0.085 Sum_probs=57.6
Q ss_pred hHHHHHHHHhCCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEE
Q 009550 337 CWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTV 416 (532)
Q Consensus 337 ~~L~~~l~~~~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (532)
..|+.-+.+.+ .++++++|||-||++++.|+. + .+. .+..+
T Consensus 30 e~i~~a~~~~~-~~i~vs~SGGKDS~vlL~L~~-------~---------------~~~----------------~i~vv 70 (241)
T PRK02090 30 ERLAWALENFG-GRLALVSSFGAEDAVLLHLVA-------Q---------------VDP----------------DIPVI 70 (241)
T ss_pred HHHHHHHHHcC-CCEEEEecCCHHHHHHHHHHH-------h---------------cCC----------------CCcEE
Confidence 34555566555 469999999999999888773 1 121 26678
Q ss_pred ecCCCCCCHHhHHHHHHHHHHhCCceEEEecHH
Q 009550 417 FMGSENSSQETRMLAKKLADEIGSWHLDVSIDT 449 (532)
Q Consensus 417 ~~~~~~s~~~~~~~a~~la~~lg~~~~~i~i~~ 449 (532)
++.+....++|.+.++++++.+|++++++..+.
T Consensus 71 fiDTG~~~pet~e~~~~~~~~~gl~l~v~~~~~ 103 (241)
T PRK02090 71 FLDTGYLFPETYRFIDELTERLLLNLKVYRPDA 103 (241)
T ss_pred EecCCCCCHHHHHHHHHHHHHhCCCEEEECCCc
Confidence 888777789999999999999999999998764
No 119
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=96.82 E-value=0.0024 Score=57.41 Aligned_cols=59 Identities=29% Similarity=0.320 Sum_probs=44.7
Q ss_pred EEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHHhHHH
Q 009550 351 FLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRML 430 (532)
Q Consensus 351 ~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 430 (532)
+.+-+|||-|||+.|.++ +++|++. .+++|...-. .++.-
T Consensus 3 v~vLfSGGKDSSLaA~iL----------------------~klgyev--------------~LVTvnFGv~----d~~k~ 42 (198)
T COG2117 3 VYVLFSGGKDSSLAALIL----------------------DKLGYEV--------------ELVTVNFGVL----DSWKY 42 (198)
T ss_pred eEEEecCCCchhHHHHHH----------------------HHhCCCc--------------EEEEEEeccc----cchhh
Confidence 556799999999977766 3377652 4677776543 35677
Q ss_pred HHHHHHHhCCceEEEecHH
Q 009550 431 AKKLADEIGSWHLDVSIDT 449 (532)
Q Consensus 431 a~~la~~lg~~~~~i~i~~ 449 (532)
|++-|+.||.+|+++.++.
T Consensus 43 A~~tA~~lgF~h~vl~Ldr 61 (198)
T COG2117 43 ARETAAILGFPHEVLQLDR 61 (198)
T ss_pred HHHHHHHhCCCcceeccCH
Confidence 8899999999999998864
No 120
>PRK08557 hypothetical protein; Provisional
Probab=96.71 E-value=0.012 Score=62.29 Aligned_cols=81 Identities=19% Similarity=0.129 Sum_probs=59.3
Q ss_pred HHhcchhhHHHHHHHHhCC--CeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHH
Q 009550 330 EIAFGPGCWLWDYLRRSGA--SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSRE 407 (532)
Q Consensus 330 ~~~~~~~~~L~~~l~~~~~--~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (532)
++.......|+..+.+.+. ..+++++|||.||++++.|+. ++ +.
T Consensus 161 ~~e~~ai~~i~~~~~~~~~~~~~i~vsfSGGKDS~vlL~L~~-------~~---------------~~------------ 206 (417)
T PRK08557 161 KLEENSLSILKDYIEKYKNKGYAINASFSGGKDSSVSTLLAK-------EV---------------IP------------ 206 (417)
T ss_pred HHHHHHHHHHHHHHHHcCCCCcEEEEEcCCcHHHHHHHHHHH-------Hh---------------CC------------
Confidence 4444445667777776653 358899999999999877762 22 21
Q ss_pred hhcceEEEEecCCCCCCHHhHHHHHHHHHHhCCceEEEecH
Q 009550 408 FAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSID 448 (532)
Q Consensus 408 ~~~~~~~~~~~~~~~s~~~~~~~a~~la~~lg~~~~~i~i~ 448 (532)
.+..+++.+....++|.+.++++++.+|+++++++-+
T Consensus 207 ----~i~vvfvDTG~efpET~e~ve~v~~~ygl~i~v~~~~ 243 (417)
T PRK08557 207 ----DLEVIFIDTGLEYPETINYVKDFAKKYDLNLDTLDGD 243 (417)
T ss_pred ----CCEEEEEECCCCCHHHHHHHHHHHHHhCCCEEEEech
Confidence 2456677766667899999999999999999998754
No 121
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=96.62 E-value=0.0045 Score=52.41 Aligned_cols=18 Identities=50% Similarity=0.756 Sum_probs=15.9
Q ss_pred EEEeccCchhHHHHHHHH
Q 009550 351 FLLPLSGGADSSSVAAIV 368 (532)
Q Consensus 351 ~~l~lSGGiDSa~~a~l~ 368 (532)
++|++|||+||++++.++
T Consensus 1 v~v~~SGG~DS~~ll~~l 18 (103)
T cd01986 1 VLVAFSGGKDSSVAAALL 18 (103)
T ss_pred CEEEEeCcHHHHHHHHHH
Confidence 579999999999987776
No 122
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=96.61 E-value=0.011 Score=61.56 Aligned_cols=82 Identities=18% Similarity=0.199 Sum_probs=53.8
Q ss_pred hHHHHHHHHhCCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEE
Q 009550 337 CWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTV 416 (532)
Q Consensus 337 ~~L~~~l~~~~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (532)
.++++++- ..++++.+|||+||++|++|+ .+| ++.+ +++++
T Consensus 222 ~~i~k~vG---~~~Vl~~vSGgvdStV~a~Ll-------~~a--------------lg~~---------------R~~ai 262 (552)
T KOG1622|consen 222 NEIRKWVG---DYKVLVAVSGGVDSTVCAALL-------RRA--------------LGPD---------------RVHAI 262 (552)
T ss_pred HHHHHHhc---ccceEEEecCCchHHHHHHHH-------HHh--------------hCCC---------------ceEEE
Confidence 45666655 579999999999999999998 355 5544 57888
Q ss_pred ecCCCCCCHHhHHHHHHHHHHhCCceEEEecHHHHHHHHHHhHh
Q 009550 417 FMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQT 460 (532)
Q Consensus 417 ~~~~~~s~~~~~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~~ 460 (532)
...--.-.....+..++--..||++...+|-.+ .|++.++.
T Consensus 263 ~vdNG~mrk~Ea~~V~~tl~~lgi~i~v~~as~---~f~s~L~~ 303 (552)
T KOG1622|consen 263 HVDNGFMRKKEAEQVEKTLVYLGIPITVVDASE---TFLSKLKG 303 (552)
T ss_pred EecccchhhhHHHHHHHHHHHcCCceEEeechH---HHHHhhcc
Confidence 765333222222333333333999999998865 44444443
No 123
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=96.55 E-value=0.01 Score=54.87 Aligned_cols=66 Identities=20% Similarity=0.253 Sum_probs=46.6
Q ss_pred eEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHHhHH
Q 009550 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRM 429 (532)
Q Consensus 350 ~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 429 (532)
.++|++|||-||++++.|+. ++ .. .+..+++.+....+++.+
T Consensus 1 ~i~vs~SGGKDS~v~l~l~~-------~~---------------~~----------------~~~vv~~dtg~e~p~t~~ 42 (174)
T PF01507_consen 1 NIVVSFSGGKDSTVMLHLAR-------EA---------------GR----------------KVPVVFIDTGYEFPETYE 42 (174)
T ss_dssp SEEEE--SSHHHHHHHHHHH-------HH---------------HT----------------TCEEEEEE-STB-HHHHH
T ss_pred CeEEEecCCHHHHHHHHHHH-------Hh---------------cC----------------CCcEEEEecCccCHHHHH
Confidence 37899999999999888873 33 11 134566666677899999
Q ss_pred HHHHHHHHhCCceEEEecHHHHHH
Q 009550 430 LAKKLADEIGSWHLDVSIDTVVSA 453 (532)
Q Consensus 430 ~a~~la~~lg~~~~~i~i~~~~~~ 453 (532)
.++++++.+|++...+.....+..
T Consensus 43 ~~~~~~~~~~~~i~~~~~~~~~~~ 66 (174)
T PF01507_consen 43 FVDELAKRYGIPIIVYRPPETFEQ 66 (174)
T ss_dssp HHHHHHHHTTCEEEEEETTSHHHH
T ss_pred HHHHHHhhhhhhhhhcccccchhh
Confidence 999999999999877766654443
No 124
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=96.55 E-value=0.0084 Score=61.56 Aligned_cols=66 Identities=18% Similarity=0.157 Sum_probs=50.6
Q ss_pred CCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHHh
Q 009550 348 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQET 427 (532)
Q Consensus 348 ~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 427 (532)
.++++|+.|||+|+|++.-.+ .+. .+. .|+|++..- +.++.+
T Consensus 4 ~kkvvLAYSGGLDTSv~i~wL-------~e~--------------~~~----------------eVia~tadv-GQ~eed 45 (403)
T COG0137 4 VKKVVLAYSGGLDTSVAIKWL-------KEK--------------GGA----------------EVIAVTADV-GQPEED 45 (403)
T ss_pred CcEEEEEecCCccHHHHHHHH-------HHh--------------cCc----------------eEEEEEEeC-CCChHH
Confidence 478999999999999864443 122 222 488988764 334789
Q ss_pred HHHHHHHHHHhCCc-eEEEecHHHH
Q 009550 428 RMLAKKLADEIGSW-HLDVSIDTVV 451 (532)
Q Consensus 428 ~~~a~~la~~lg~~-~~~i~i~~~~ 451 (532)
.+.+++=|.++|+. |+++|..+-|
T Consensus 46 ~~~i~eKA~~~Ga~~~~viD~reeF 70 (403)
T COG0137 46 LDAIREKALELGAEEAYVIDAREEF 70 (403)
T ss_pred hHHHHHHHHHhCCceEEEeecHHHH
Confidence 99999999999999 9999998744
No 125
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=96.46 E-value=0.01 Score=64.49 Aligned_cols=66 Identities=21% Similarity=0.288 Sum_probs=44.8
Q ss_pred CeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCC-CCCHH-
Q 009550 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSE-NSSQE- 426 (532)
Q Consensus 349 ~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~- 426 (532)
.++++.||||+||++++.++. + .|. .|+++++... .++..
T Consensus 178 gk~lvllSGGiDS~va~~~~~-------k---------------rG~----------------~v~~l~f~~g~~~~~~~ 219 (482)
T PRK01269 178 EDVLSLISGGFDSGVASYMLM-------R---------------RGS----------------RVHYCFFNLGGAAHEIG 219 (482)
T ss_pred CeEEEEEcCCchHHHHHHHHH-------H---------------cCC----------------EEEEEEEecCCchhHHH
Confidence 479999999999999777762 1 342 3788877532 22232
Q ss_pred hHHHHHHHHHHhC----CceEEEecHHHHH
Q 009550 427 TRMLAKKLADEIG----SWHLDVSIDTVVS 452 (532)
Q Consensus 427 ~~~~a~~la~~lg----~~~~~i~i~~~~~ 452 (532)
..+.|+.+++.++ ++++++++.+.+.
T Consensus 220 ~~~~a~~l~~~~~~~~~~~l~~v~~~~~~~ 249 (482)
T PRK01269 220 VKQVAHYLWNRYGSSHRVRFISVDFEPVVG 249 (482)
T ss_pred HHHHHHHHHHHhCccCCceEEEEecHHHHH
Confidence 5667877877766 4577888776555
No 126
>PRK05370 argininosuccinate synthase; Validated
Probab=96.44 E-value=0.0099 Score=62.62 Aligned_cols=67 Identities=15% Similarity=0.148 Sum_probs=49.0
Q ss_pred CCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHH
Q 009550 347 GASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQE 426 (532)
Q Consensus 347 ~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 426 (532)
+-++++|+.|||+|||+++.-+ ++ -++ .|+|++..--....+
T Consensus 10 ~~~KVvLAYSGGLDTSv~l~wL--------~e--------------~~~----------------eVia~~aDvGQ~~~e 51 (447)
T PRK05370 10 VGQRVGIAFSGGLDTSAALLWM--------RQ--------------KGA----------------VPYAYTANLGQPDED 51 (447)
T ss_pred CCCEEEEEecCCchHHHHHHHH--------Hh--------------cCC----------------eEEEEEEECCCCCcc
Confidence 3478999999999999865443 22 122 388887764332246
Q ss_pred hHHHHHHHHHHhCC-ceEEEecHHHH
Q 009550 427 TRMLAKKLADEIGS-WHLDVSIDTVV 451 (532)
Q Consensus 427 ~~~~a~~la~~lg~-~~~~i~i~~~~ 451 (532)
+.+.+++=|..+|+ +|+++|..+.|
T Consensus 52 d~~~i~~kA~~~GA~~~~viDlr~eF 77 (447)
T PRK05370 52 DYDAIPRRAMEYGAENARLIDCRAQL 77 (447)
T ss_pred chHHHHHHHHHhCCCEEEEeccHHHH
Confidence 77889999999999 69999998644
No 127
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=96.42 E-value=0.0084 Score=62.62 Aligned_cols=63 Identities=25% Similarity=0.293 Sum_probs=42.6
Q ss_pred EEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHHhHHHH
Q 009550 352 LLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRMLA 431 (532)
Q Consensus 352 ~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~a 431 (532)
||++|||+|||++...+ ++ .+.. .|+|++...- .++++.+.+
T Consensus 1 VLAySGGLDTS~~l~~L--------~e--------------~~~~---------------~Via~~aDlG-q~~~d~~~i 42 (388)
T PF00764_consen 1 VLAYSGGLDTSVILKWL--------KE--------------EGGY---------------EVIAVTADLG-QPDEDLEAI 42 (388)
T ss_dssp EEE--SSHHHHHHHHHH--------HH--------------TTTE---------------EEEEEEEESS-ST-S-HHHH
T ss_pred CeeeCCChHHHHHHHHH--------Hh--------------hcCc---------------eEEEEEEECC-CcHHHHHHH
Confidence 68999999999865554 22 2312 5899988753 345788899
Q ss_pred HHHHHHhCC-ceEEEecHHHHH
Q 009550 432 KKLADEIGS-WHLDVSIDTVVS 452 (532)
Q Consensus 432 ~~la~~lg~-~~~~i~i~~~~~ 452 (532)
++-|..+|+ +|+++|..+.|-
T Consensus 43 ~~kA~~~Ga~~~~vvD~r~ef~ 64 (388)
T PF00764_consen 43 EEKALKLGASKHIVVDARDEFA 64 (388)
T ss_dssp HHHHHHHT-SEEEEEE-HHHHH
T ss_pred HHHHHhcCCceeeecchHHHHH
Confidence 999999998 999999987553
No 128
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=96.23 E-value=0.015 Score=56.33 Aligned_cols=37 Identities=11% Similarity=0.104 Sum_probs=25.6
Q ss_pred CHHhHHHHHHHHHHhCCceEEEecHH----HHHHHHHHhHh
Q 009550 424 SQETRMLAKKLADEIGSWHLDVSIDT----VVSAFLSLFQT 460 (532)
Q Consensus 424 ~~~~~~~a~~la~~lg~~~~~i~i~~----~~~~~~~~~~~ 460 (532)
.....+.++..|+.+|++++.+.+.. -++.+...+++
T Consensus 43 h~~~~~~~~~qA~algiPl~~~~~~~~~e~~~~~l~~~l~~ 83 (222)
T TIGR00289 43 HSPNLHLTDLVAEAVGIPLIKLYTSGEEEKEVEDLAGQLGE 83 (222)
T ss_pred ccCCHHHHHHHHHHcCCCeEEEEcCCchhHHHHHHHHHHHH
Confidence 34566789999999999998887643 44444444443
No 129
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=95.61 E-value=0.081 Score=53.50 Aligned_cols=75 Identities=15% Similarity=0.091 Sum_probs=54.0
Q ss_pred HHHHHHHhCCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEec
Q 009550 339 LWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFM 418 (532)
Q Consensus 339 L~~~l~~~~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (532)
|+.-+.+. .+.++++|||-||++++.|+ .+++. .+.. .+..+++
T Consensus 12 lRe~~~~f--~~~vv~~SGGKDS~VlLhLa-------~kaf~------------~~~~---------------p~~vl~I 55 (294)
T TIGR02039 12 IREVAAEF--ERPVMLYSIGKDSSVLLHLA-------RKAFY------------PGPL---------------PFPLLHV 55 (294)
T ss_pred HHHHHHhc--CCcEEEEecChHHHHHHHHH-------HHHhc------------ccCC---------------CeEEEEE
Confidence 44444443 45678899999999988887 34421 1111 2567777
Q ss_pred CCCCCCHHhHHHHHHHHHHhCCceEEEecHH
Q 009550 419 GSENSSQETRMLAKKLADEIGSWHLDVSIDT 449 (532)
Q Consensus 419 ~~~~s~~~~~~~a~~la~~lg~~~~~i~i~~ 449 (532)
.+...-+++.+...++|+.+|+++++...++
T Consensus 56 DTG~~F~Et~efrd~~a~~~gl~l~v~~~~~ 86 (294)
T TIGR02039 56 DTGWKFREMIAFRDHMVAKYGLRLIVHSNEE 86 (294)
T ss_pred ecCCCCHHHHHHHHHHHHHhCCCEEEEechh
Confidence 7766667899999999999999999987765
No 130
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]
Probab=95.54 E-value=0.066 Score=55.76 Aligned_cols=71 Identities=27% Similarity=0.257 Sum_probs=51.8
Q ss_pred CeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecC-CCCCCHHh
Q 009550 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMG-SENSSQET 427 (532)
Q Consensus 349 ~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~ 427 (532)
.++++-||||+||-+.+.++. +-|. .++.|++. ..++++..
T Consensus 176 Gk~l~LlSGGIDSPVA~~l~m----------------------kRG~----------------~v~~v~f~~~p~~~~~a 217 (383)
T COG0301 176 GKVLLLLSGGIDSPVAAWLMM----------------------KRGV----------------EVIPVHFGNPPYTSEKA 217 (383)
T ss_pred CcEEEEEeCCCChHHHHHHHH----------------------hcCC----------------EEEEEEEcCCCCchHHH
Confidence 368888999999999877762 1242 37888884 45788888
Q ss_pred HHHHHHHH-HHhC-----CceEEEecHHHHHHHHHH
Q 009550 428 RMLAKKLA-DEIG-----SWHLDVSIDTVVSAFLSL 457 (532)
Q Consensus 428 ~~~a~~la-~~lg-----~~~~~i~i~~~~~~~~~~ 457 (532)
...+..|+ ..+. +.++.+|..++.+.+...
T Consensus 218 ~~k~~~l~~~~~~~~~~~~~~~~v~f~~v~~~i~~~ 253 (383)
T COG0301 218 REKVVALALLRLTSYGGKVRLYVVPFTEVQEEILEK 253 (383)
T ss_pred HHHHHHHHhhhhcccCCceEEEEEchHHHHHHHHhh
Confidence 88888887 4443 456888888888777654
No 131
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=95.29 E-value=0.14 Score=52.03 Aligned_cols=77 Identities=16% Similarity=0.038 Sum_probs=55.5
Q ss_pred hHHHHHHHHhCCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEE
Q 009550 337 CWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTV 416 (532)
Q Consensus 337 ~~L~~~l~~~~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (532)
.-|+..+.+ +++.++++|||-||++++.|+. +++. .+.. .+-.+
T Consensus 28 ~ilrea~~~--f~~~~v~~SgGKDS~VlLhLa~-------kaf~------------~~~~---------------~~pvl 71 (312)
T PRK12563 28 HILREVVAE--CSKPVMLYSIGKDSVVMLHLAM-------KAFR------------PTRP---------------PFPLL 71 (312)
T ss_pred HHHHHHHHh--cCCcEEEecCChHHHHHHHHHH-------Hhhc------------ccCC---------------CeeEE
Confidence 344444444 3578899999999999888873 4421 0111 25677
Q ss_pred ecCCCCCCHHhHHHHHHHHHHhCCceEEEecHH
Q 009550 417 FMGSENSSQETRMLAKKLADEIGSWHLDVSIDT 449 (532)
Q Consensus 417 ~~~~~~s~~~~~~~a~~la~~lg~~~~~i~i~~ 449 (532)
+..+-..-++|.+...++++.+|+++++..-.+
T Consensus 72 ~VDTG~~FpEt~efrD~~a~~~gl~Liv~~~~~ 104 (312)
T PRK12563 72 HVDTTWKFREMIDFRDRRAKELGLDLVVHHNPD 104 (312)
T ss_pred EeCCCCCCHHHHHHHHHHHHHhCCcEEEecChH
Confidence 888878889999999999999999988765443
No 132
>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin). This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS.
Probab=95.08 E-value=0.16 Score=48.98 Aligned_cols=62 Identities=16% Similarity=0.093 Sum_probs=48.7
Q ss_pred CeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHHhH
Q 009550 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (532)
Q Consensus 349 ~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 428 (532)
..+++++|||.||++++-|+. +. .. .+..+++.+...-++|.
T Consensus 14 ~~~~~s~SgGKDS~Vll~L~~-------~~---------------~~----------------~~~v~f~DTg~efpeT~ 55 (212)
T TIGR00434 14 GHLVYSTSFGIQGAVLLDLVS-------KI---------------SP----------------DIPVIFLDTGYHFPETY 55 (212)
T ss_pred CCEEEEecCCHHHHHHHHHHH-------hc---------------CC----------------CCcEEEecCCCCCHHHH
Confidence 479999999999999877772 22 21 24567888888889999
Q ss_pred HHHHHHHHHhCCceEEEecH
Q 009550 429 MLAKKLADEIGSWHLDVSID 448 (532)
Q Consensus 429 ~~a~~la~~lg~~~~~i~i~ 448 (532)
+...++++.+|+....+.-+
T Consensus 56 efv~~~~~~~~l~i~~~~~~ 75 (212)
T TIGR00434 56 ELIDELTERYPLNIKVYKPD 75 (212)
T ss_pred HHHHHHHHHhCCceEEECCc
Confidence 99999999999887776543
No 133
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.
Probab=95.02 E-value=0.2 Score=48.88 Aligned_cols=61 Identities=10% Similarity=0.066 Sum_probs=46.2
Q ss_pred CeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHHhH
Q 009550 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (532)
Q Consensus 349 ~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 428 (532)
..++++.|||.||+|++-|+. ++ ... .+-.++.-+...-++|.
T Consensus 26 ~~~~~s~S~Gkds~VlL~l~~-------~~--------------~~~----------------~i~vv~vDTg~~fpET~ 68 (226)
T TIGR02057 26 HGLVQTSAFGIQALVTLHLLS-------SI--------------SEP----------------MIPVIFIDTLYHFPQTL 68 (226)
T ss_pred CCEEEEecCCHHHHHHHHHHH-------Hh--------------hCC----------------CCCEEEEeCCCCCHHHH
Confidence 579999999999999888873 32 101 24567777777889999
Q ss_pred HHHHHHHHHhC--CceEEEe
Q 009550 429 MLAKKLADEIG--SWHLDVS 446 (532)
Q Consensus 429 ~~a~~la~~lg--~~~~~i~ 446 (532)
+.+.++++.+| +.+....
T Consensus 69 e~~d~~~~~~~~~l~v~~~~ 88 (226)
T TIGR02057 69 TLKDELTKKYYQTLNLYKYD 88 (226)
T ss_pred HHHHHHHHHhCCceEEEEeC
Confidence 99999999999 4444443
No 134
>COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=94.62 E-value=0.041 Score=52.02 Aligned_cols=58 Identities=26% Similarity=0.225 Sum_probs=39.3
Q ss_pred CeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHHhH
Q 009550 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (532)
Q Consensus 349 ~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 428 (532)
.++++++|||+|||.++.++. . .+.. -+| .+..|| +.-+
T Consensus 61 ~kiaVA~SGG~DSsas~iilR--------~--------------~g~~---v~p-----------~t~~Lp-----~~ir 99 (255)
T COG1365 61 PKIAVAYSGGVDSSASAIILR--------W--------------AGFT---VDP-----------GTAILP-----DHIR 99 (255)
T ss_pred ceEEEEecCCcchHHHHHHHH--------h--------------hcee---ecc-----------ccccCC-----HHHh
Confidence 479999999999999888873 1 2211 001 123344 5667
Q ss_pred HHHHHHHHHhCCceEEEec
Q 009550 429 MLAKKLADEIGSWHLDVSI 447 (532)
Q Consensus 429 ~~a~~la~~lg~~~~~i~i 447 (532)
.++.+++..+|+.+.-+.+
T Consensus 100 ~n~~~l~~~lg~~p~yvee 118 (255)
T COG1365 100 RNKEELETLLGEVPEYVEE 118 (255)
T ss_pred HHHHHHHHHHccCHHHHHH
Confidence 7899999999998765543
No 135
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=92.82 E-value=0.41 Score=38.65 Aligned_cols=18 Identities=44% Similarity=0.669 Sum_probs=15.7
Q ss_pred EEEeccCchhHHHHHHHH
Q 009550 351 FLLPLSGGADSSSVAAIV 368 (532)
Q Consensus 351 ~~l~lSGGiDSa~~a~l~ 368 (532)
+++++|||.||+.++.++
T Consensus 1 ilv~~sgg~dS~~~l~~~ 18 (86)
T cd01984 1 ILVALSGGLDSSVLLHLA 18 (86)
T ss_pred CEEEeeCCHHHHHHHHHH
Confidence 578999999999977776
No 136
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=92.81 E-value=0.63 Score=46.40 Aligned_cols=65 Identities=25% Similarity=0.291 Sum_probs=50.9
Q ss_pred CeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHHhH
Q 009550 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (532)
Q Consensus 349 ~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 428 (532)
..++++.|||.||++++.|+. +++ . .+..++..+..--++|.
T Consensus 40 ~~~~~~~S~Gkds~V~l~L~~-------k~~--------------~-----------------~~~vif~DTg~~f~Et~ 81 (261)
T COG0175 40 NPVVVSFSGGKDSTVLLHLAA-------KAF--------------P-----------------DFPVIFLDTGYHFPETY 81 (261)
T ss_pred CCeEEEecCchhHHHHHHHHH-------Hhc--------------C-----------------CCcEEEEeCCCcCHHHH
Confidence 457999999999999988883 442 1 14456777777789999
Q ss_pred HHHHHHHHHhCCceEEEecHHHH
Q 009550 429 MLAKKLADEIGSWHLDVSIDTVV 451 (532)
Q Consensus 429 ~~a~~la~~lg~~~~~i~i~~~~ 451 (532)
+.+.++++.+|+++.+..-++.+
T Consensus 82 ~~~d~~~~~~~~~l~~~~~~~~~ 104 (261)
T COG0175 82 EFRDRLAEEYGLDLKVYRPDDEV 104 (261)
T ss_pred HHHHHHHHHcCCeEEEecCccch
Confidence 99999999999888777665544
No 137
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=92.19 E-value=0.75 Score=44.69 Aligned_cols=34 Identities=18% Similarity=0.227 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHhCCceEEEecH----HHHHHHHHHhHh
Q 009550 427 TRMLAKKLADEIGSWHLDVSID----TVVSAFLSLFQT 460 (532)
Q Consensus 427 ~~~~a~~la~~lg~~~~~i~i~----~~~~~~~~~~~~ 460 (532)
..+..+..|+.+|+++..+..+ +-++.+...++.
T Consensus 46 ~~~~~~~qA~algipl~~~~~~~~~e~~~e~l~~~l~~ 83 (223)
T TIGR00290 46 NAHLTDLQAESIGIPLIKLYTEGTEEDEVEELKGILHT 83 (223)
T ss_pred CHHHHHHHHHHcCCCeEEeecCCCccHHHHHHHHHHHH
Confidence 4467788999999999876653 234444455544
No 138
>PRK06850 hypothetical protein; Provisional
Probab=91.76 E-value=0.87 Score=49.48 Aligned_cols=37 Identities=19% Similarity=0.129 Sum_probs=25.1
Q ss_pred hcchhhHHHHHHHHhCCCeEEEeccCchhHHHHHHHHH
Q 009550 332 AFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVG 369 (532)
Q Consensus 332 ~~~~~~~L~~~l~~~~~~~~~l~lSGGiDSa~~a~l~~ 369 (532)
...+...+++..... -..++||+|||=||++++.|++
T Consensus 19 ~~~~i~~i~~~Y~~~-~~P~vV~fSGGKDStavL~Lv~ 55 (507)
T PRK06850 19 IEELIEEIQELYCAD-NRPWVIGYSGGKDSTAVLQLVW 55 (507)
T ss_pred HHHHHHHHHHHHhcC-CCCeEEeCCCCchHHHHHHHHH
Confidence 333444455533332 2568999999999999988884
No 139
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=90.34 E-value=1.4 Score=47.20 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=18.8
Q ss_pred CeEEEeccCchhHHHHHHHHH
Q 009550 349 SGFLLPLSGGADSSSVAAIVG 369 (532)
Q Consensus 349 ~~~~l~lSGGiDSa~~a~l~~ 369 (532)
..++||+|||=||++++.|+.
T Consensus 14 ~p~vV~fSGGKDSta~L~Lv~ 34 (447)
T TIGR03183 14 IPWVVGYSGGKDSTAVLQLIW 34 (447)
T ss_pred CceEEEeCCCHHHHHHHHHHH
Confidence 568999999999999998884
No 140
>KOG1706 consensus Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=89.28 E-value=1.2 Score=44.56 Aligned_cols=56 Identities=25% Similarity=0.329 Sum_probs=39.6
Q ss_pred CCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHHh
Q 009550 348 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQET 427 (532)
Q Consensus 348 ~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 427 (532)
.+.+||+.|||+|++.. |++ .++ .|++ |++ ||..-+. .++
T Consensus 5 ~~~vVLAySGgLDTsci--l~W------Lke--------------qGye----------------Via-y~AnvGQ-~ed 44 (412)
T KOG1706|consen 5 KKSVVLAYSGGLDTSCI--LAW------LKE--------------QGYE----------------VIA-YLANVGQ-KED 44 (412)
T ss_pred CceEEEEecCCcCchhh--hHH------HHh--------------cCce----------------EEE-eeccccc-hhh
Confidence 46899999999999864 332 133 4654 554 5554433 789
Q ss_pred HHHHHHHHHHhCCceE
Q 009550 428 RMLAKKLADEIGSWHL 443 (532)
Q Consensus 428 ~~~a~~la~~lg~~~~ 443 (532)
.+.|++=|..+|+.-.
T Consensus 45 fe~ar~kAlk~Gakk~ 60 (412)
T KOG1706|consen 45 FEEARKKALKSGAKKV 60 (412)
T ss_pred HHHHHHhhhhcCceEE
Confidence 9999999999998743
No 141
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=88.86 E-value=0.94 Score=43.88 Aligned_cols=61 Identities=10% Similarity=0.107 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhCCceEEEecHHHHHHHHHHhHhhhCCCCCcccCCCccccccchhhhhhhhhHHH
Q 009550 428 RMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVL 492 (532)
Q Consensus 428 ~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~qaR~R~~~ 492 (532)
.+.....|+.+|+++..+.++..-+...+.+...+... +.+ +.-.-|+..+..+.|+..+.
T Consensus 47 ~~~~~~qA~algipl~~~~~~g~~~~~~~~l~~~l~~~---~v~-~vv~GdI~~~~~r~~~e~vc 107 (218)
T PF01902_consen 47 IELIEAQAEALGIPLIEIPTSGDEEDYVEDLKEALKEL---KVE-AVVFGDIDSEYQRNWVERVC 107 (218)
T ss_dssp GTCHHHHHHHHT--EEEEEE---CCCHHHHHHHHHCTC-----S-EEE--TTS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEEEccCccchhhHHHHHHHHHc---CCC-EEEECcCCcHHHHHHHHHHH
Confidence 45677888999999999888732222233333322111 010 11224555666666665543
No 142
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=85.22 E-value=4 Score=39.32 Aligned_cols=23 Identities=17% Similarity=0.102 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHhCCceEEEecHH
Q 009550 427 TRMLAKKLADEIGSWHLDVSIDT 449 (532)
Q Consensus 427 ~~~~a~~la~~lg~~~~~i~i~~ 449 (532)
-.+.+..+|+.+|+++.....+.
T Consensus 47 n~~~~~~~Ae~~gi~l~~~~~~g 69 (223)
T COG2102 47 NLELAELQAEAMGIPLVTFDTSG 69 (223)
T ss_pred chHHHHHHHHhcCCceEEEecCc
Confidence 44568889999999999988876
No 143
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=80.25 E-value=1.1 Score=47.11 Aligned_cols=20 Identities=40% Similarity=0.574 Sum_probs=18.4
Q ss_pred CeEEEeccCchhHHHHHHHH
Q 009550 349 SGFLLPLSGGADSSSVAAIV 368 (532)
Q Consensus 349 ~~~~l~lSGGiDSa~~a~l~ 368 (532)
..++|-+|||+||+++|.|+
T Consensus 251 s~VcVlfSGGvDs~vvA~l~ 270 (520)
T KOG0573|consen 251 SNVCVLFSGGVDSTVVAVLA 270 (520)
T ss_pred CcEEEEecCCchHHHHHHHH
Confidence 57999999999999999888
No 144
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=78.68 E-value=2 Score=43.71 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.1
Q ss_pred hCCCeEEEeccCchhHHHHHHHHH
Q 009550 346 SGASGFLLPLSGGADSSSVAAIVG 369 (532)
Q Consensus 346 ~~~~~~~l~lSGGiDSa~~a~l~~ 369 (532)
+.+..++|++|||-||+|.+-|+.
T Consensus 25 ~~f~~VcVSFSGGKDS~lmLhL~~ 48 (407)
T COG3969 25 NTFPRVCVSFSGGKDSGLMLHLVA 48 (407)
T ss_pred hcCCeEEEEecCCCchhHHHHHHH
Confidence 446899999999999999888884
No 145
>PLN02309 5'-adenylylsulfate reductase
Probab=71.17 E-value=24 Score=38.21 Aligned_cols=33 Identities=15% Similarity=0.087 Sum_probs=28.3
Q ss_pred EEEEecCCCCCCHHhHHHHHHHHHHhCCceEEE
Q 009550 413 FYTVFMGSENSSQETRMLAKKLADEIGSWHLDV 445 (532)
Q Consensus 413 ~~~~~~~~~~s~~~~~~~a~~la~~lg~~~~~i 445 (532)
+--+++.+-+-.++|.+.+.++.+.+|++++.+
T Consensus 136 ipV~flDTG~lfpETy~~~d~v~~~ygl~i~~~ 168 (457)
T PLN02309 136 FRVFSLDTGRLNPETYRLFDAVEKHYGIRIEYM 168 (457)
T ss_pred CcEEEecCCCCCHHHHHHHHHHHHHhCCceEEE
Confidence 335677887888999999999999999998877
No 146
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=70.87 E-value=24 Score=38.21 Aligned_cols=33 Identities=12% Similarity=0.080 Sum_probs=28.3
Q ss_pred EEEEecCCCCCCHHhHHHHHHHHHHhCCceEEE
Q 009550 413 FYTVFMGSENSSQETRMLAKKLADEIGSWHLDV 445 (532)
Q Consensus 413 ~~~~~~~~~~s~~~~~~~a~~la~~lg~~~~~i 445 (532)
+--+++.+-+--++|.+.+.++++.+|++++.+
T Consensus 141 ipV~flDTG~lFpETy~~~d~v~~~ygl~l~~~ 173 (463)
T TIGR00424 141 FRVFSLDTGRLNPETYRFFDAVEKQYGIRIEYM 173 (463)
T ss_pred CcEEEecCCCCCHHHHHHHHHHHHHhCCceEEE
Confidence 445677887888999999999999999998876
No 147
>KOG2840 consensus Uncharacterized conserved protein with similarity to predicted ATPase of the PP-loop superfamily [General function prediction only]
Probab=57.20 E-value=16 Score=37.20 Aligned_cols=83 Identities=18% Similarity=0.159 Sum_probs=49.4
Q ss_pred HHHHHHHhCCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEec
Q 009550 339 LWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFM 418 (532)
Q Consensus 339 L~~~l~~~~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (532)
++..+-..| ..+.+|-|||-||++.|..+ ++|++ +..+.. +. -+..+.=
T Consensus 43 ~~n~l~~rg-e~v~igasGgkdstvlA~v~--------~~Ln~----------r~~~g~--------~l----~Lls~de 91 (347)
T KOG2840|consen 43 VANKLFARG-ERVAIGASGGKDSTVLAYVL--------DALNE----------RHDYGL--------RL----FLLSIDE 91 (347)
T ss_pred hccCccCCC-CccccccccchhHHHHHHHH--------HHhhh----------hcCCCc--------ee----eeeeccc
Confidence 333333343 56999999999999976665 66532 111110 00 1222222
Q ss_pred CCCCCCHHhHHHHHHHHHHhCCceEEEecHHHHH
Q 009550 419 GSENSSQETRMLAKKLADEIGSWHLDVSIDTVVS 452 (532)
Q Consensus 419 ~~~~s~~~~~~~a~~la~~lg~~~~~i~i~~~~~ 452 (532)
....-.+......+......|++..+++.++++.
T Consensus 92 gi~gyrd~sl~avkrn~~~~~lPL~ivs~~dl~~ 125 (347)
T KOG2840|consen 92 GIRGYRDDSLEAVKRNGVQYGLPLCIVSYKDLYG 125 (347)
T ss_pred cccceeccHHHHHHHhhhhcCCceEEecHHHHhc
Confidence 2222334455556677788999999999999888
No 148
>TIGR02055 APS_reductase thioredoxin-dependent adenylylsulfate APS reductase. This model describes recently identified adenosine 5'-phosphosulfate (APS) reductase activity found in sulfate-assimilatory prokaryotes, thus separating it from the traditionally described phosphoadenosine 5'-phosphosulfate (PAPS) reductases found in bacteria and fungi. Homologous to PAPS reductase in enterobacteria, cyanobacteria, and yeast, APS reductase here clusters with, and demonstrates greater homology to plant APS reductase. Additionally, the presence of two conserved C-terminal motifs (CCXXRKXXPL & SXGCXXCT) distinguishes APS substrate specificity and serves as a FeS cluster.
Probab=56.58 E-value=27 Score=32.99 Aligned_cols=35 Identities=11% Similarity=0.015 Sum_probs=30.2
Q ss_pred EEEEecCCCCCCHHhHHHHHHHHHHhCCceEEEec
Q 009550 413 FYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSI 447 (532)
Q Consensus 413 ~~~~~~~~~~s~~~~~~~a~~la~~lg~~~~~i~i 447 (532)
+..+++-+-..-++|.+.+.++++.+|++.+++.-
T Consensus 19 ~~vifvDTg~~FpET~~~~d~~~~~~~l~i~~~~~ 53 (191)
T TIGR02055 19 VKVFFLDTGRLFKETYETIDQVRERYDILIDVLSP 53 (191)
T ss_pred CcEEEecCCCCCHHHHHHHHHHHHHhCCceEEEcC
Confidence 55678888888899999999999999999888854
No 149
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=51.73 E-value=42 Score=33.42 Aligned_cols=62 Identities=15% Similarity=0.062 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhhHHHHHHHHHHhcccCCCeEEEE
Q 009550 19 DCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCSF 85 (532)
Q Consensus 19 ~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~iiv 85 (532)
+..++.+.+.++.|+.-|++.|+||... +.... ...+..+...+.+.++++.++++|+.+.+
T Consensus 90 ~~~~~~~~~~i~~a~~lG~~~v~~~~~~---~~~~~--~~~~~~~~~~~~l~~l~~~A~~~Gv~l~l 151 (279)
T TIGR00542 90 QQGLEIMEKAIQLARDLGIRTIQLAGYD---VYYEE--HDEETRRRFREGLKEAVELAARAQVTLAV 151 (279)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEecCcc---cccCc--CCHHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 3467778889999999999999987421 11111 11223344556677887777788887654
No 150
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=51.02 E-value=43 Score=33.20 Aligned_cols=62 Identities=16% Similarity=0.057 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhhHHHHHHHHHHhcccCCCeEEEE
Q 009550 19 DCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCSF 85 (532)
Q Consensus 19 ~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~iiv 85 (532)
+..++.+.+.++.|+.-|++.|++| |+............+...+.+.++++.++++|+.+.+
T Consensus 90 ~~~~~~~~~~i~~a~~lG~~~v~~~-----~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~l 151 (284)
T PRK13210 90 ERALEIMKKAIRLAQDLGIRTIQLA-----GYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLAV 151 (284)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEC-----CcccccccccHHHHHHHHHHHHHHHHHHHHhCCEEEE
Confidence 4567788889999999999999986 2211000011223344556677777777778887653
No 151
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=48.09 E-value=44 Score=33.26 Aligned_cols=62 Identities=16% Similarity=0.124 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhhHHHHHHHHHHhcccCCCeEEEE
Q 009550 19 DCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCSF 85 (532)
Q Consensus 19 ~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~iiv 85 (532)
+...+.+.+.++.|+.-|+..|+++ |+............+...+.+.++++.++++|+.+.+
T Consensus 95 ~~~~~~~~~~i~~a~~lG~~~i~~~-----~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~i 156 (283)
T PRK13209 95 AQALEIMRKAIQLAQDLGIRVIQLA-----GYDVYYEQANNETRRRFIDGLKESVELASRASVTLAF 156 (283)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEC-----CccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEE
Confidence 4467778899999999999999975 3321110111222233445667777766678876643
No 152
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=44.43 E-value=74 Score=31.70 Aligned_cols=70 Identities=10% Similarity=0.136 Sum_probs=38.7
Q ss_pred HHHHhCCCeEEEEcCC--CCccccc-------------hHHHHHHHHHHHHHcCcEEEEEcCcCCCCCceeeeccEEEE-
Q 009550 185 ADLALNGVEVFMNASG--SHHQLRK-------------LDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVV- 248 (532)
Q Consensus 185 ~~la~~GadlIl~psa--s~~~~g~-------------~~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~f~G~S~I~- 248 (532)
+..+.+|||+|+.|=. +++.... .......++..|.+++++++.- ..-...++.+|. .++++
T Consensus 37 ~~A~~~gadlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~ii~g-~~~~~~~~~~yN-s~~~i~ 114 (287)
T cd07568 37 REAAEAGAQIVCLQEIFYGPYFCAEQDTKWYEFAEEIPNGPTTKRFAALAKEYNMVLILP-IYEKEQGGTLYN-TAAVID 114 (287)
T ss_pred HHHHHcCCcEEEcccccCCCCCccccccchhhhcccCCCChHHHHHHHHHHHCCEEEEEE-eEEEcCCCcEEE-EEEEEC
Confidence 3455689999999843 3332110 0012345778899999988752 111111223343 34555
Q ss_pred eCCeEEEe
Q 009550 249 VNGDMIAQ 256 (532)
Q Consensus 249 p~G~ila~ 256 (532)
|+|+++..
T Consensus 115 ~~G~i~~~ 122 (287)
T cd07568 115 ADGTYLGK 122 (287)
T ss_pred CCCcEeeE
Confidence 89997643
No 153
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=44.33 E-value=64 Score=31.83 Aligned_cols=63 Identities=22% Similarity=0.002 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhhHHHHHHHHHHhcccCCCeEEEE
Q 009550 18 FDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCSF 85 (532)
Q Consensus 18 ~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~iiv 85 (532)
.+..++.+.+.++.|+.-|++.++++-. ..||.. ...+..+...+.++++++.++++|+.+.+
T Consensus 85 r~~~~~~~~~~i~~a~~lGa~~i~~~~~-~~~~~~----~~~~~~~~~~~~l~~l~~~a~~~gv~l~i 147 (275)
T PRK09856 85 RRESLDMIKLAMDMAKEMNAGYTLISAA-HAGYLT----PPNVIWGRLAENLSELCEYAENIGMDLIL 147 (275)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEcCC-CCCCCC----CHHHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 3567888999999999999999887643 223321 11223344556777887777788876644
No 154
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.
Probab=42.07 E-value=82 Score=31.11 Aligned_cols=70 Identities=14% Similarity=0.216 Sum_probs=39.7
Q ss_pred HHHHHhCCCeEEEEcCC--CCccccch-------------HHHHHHHHHHHHHcCcEEEEEcCcCCCCCceeeeccEEEE
Q 009550 184 HADLALNGVEVFMNASG--SHHQLRKL-------------DYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVV 248 (532)
Q Consensus 184 ~~~la~~GadlIl~psa--s~~~~g~~-------------~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~f~G~S~I~ 248 (532)
.+..+.+|||+|+.|=. ++|..... ....+.++..|.+++++++..-. ...++..| -+++++
T Consensus 25 i~~A~~~gadlivfPE~~~~gy~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~i~~g~~--~~~~~~~y-Ns~~~i 101 (279)
T TIGR03381 25 VREAAARGAQIILLPELFEGPYFCKDQDEDYFALAQPVEGHPAIKRFQALAKELGVVIPVSFF--EKAGNAYY-NSLAMI 101 (279)
T ss_pred HHHHHHCCCCEEEcccccCCCCcCCccccchHhhcCcCCCChHHHHHHHHHHHcCcEEEEeee--ecCCCceE-EeEEEE
Confidence 34556789999999842 33321110 12345677888899987764321 11122233 334555
Q ss_pred -eCCeEEEe
Q 009550 249 -VNGDMIAQ 256 (532)
Q Consensus 249 -p~G~ila~ 256 (532)
|+|+++..
T Consensus 102 ~~~G~i~~~ 110 (279)
T TIGR03381 102 DADGSVLGV 110 (279)
T ss_pred CCCCCEEEE
Confidence 89998743
No 155
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=41.69 E-value=1.2e+02 Score=25.92 Aligned_cols=71 Identities=20% Similarity=0.285 Sum_probs=34.3
Q ss_pred EEEEecCCCCCCHHhHHHHHHHHHHhCCceEEEecH------HHHHHHHHHhHhhhCCCCCcccCCCccccccchhhhhh
Q 009550 413 FYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSID------TVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQA 486 (532)
Q Consensus 413 ~~~~~~~~~~s~~~~~~~a~~la~~lg~~~~~i~i~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~qa 486 (532)
|+..-.......+.+...-++.|+++|+.+.-+++. +-+++|.+.++..- .| ++---++
T Consensus 31 VInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~~~--~P-------------vl~hC~s 95 (110)
T PF04273_consen 31 VINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALESLP--KP-------------VLAHCRS 95 (110)
T ss_dssp EEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHHTTT--TS-------------EEEE-SC
T ss_pred EEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHHhCC--CC-------------EEEECCC
Confidence 444443333333445555667899999999999886 33444444444321 11 1223334
Q ss_pred hhhHHHHHHHhh
Q 009550 487 RIRMVLAFMLAS 498 (532)
Q Consensus 487 R~R~~~l~~~a~ 498 (532)
=.|...||.+++
T Consensus 96 G~Ra~~l~~l~~ 107 (110)
T PF04273_consen 96 GTRASALWALAQ 107 (110)
T ss_dssp SHHHHHHHHHHH
T ss_pred ChhHHHHHHHHh
Confidence 457788887776
No 156
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=40.66 E-value=88 Score=31.40 Aligned_cols=66 Identities=12% Similarity=0.094 Sum_probs=36.5
Q ss_pred CCCeEEEEcCC--CCccccch--------------HHHHHHHHHHHHHcCcEEEEEcC-cCCCCCceeeeccEEEE-eCC
Q 009550 190 NGVEVFMNASG--SHHQLRKL--------------DYRIRAFISATHSRGGVYMYSNH-QGCDGGRLYFDGCSCVV-VNG 251 (532)
Q Consensus 190 ~GadlIl~psa--s~~~~g~~--------------~~~~~l~~~rA~e~~~~vv~aN~-~G~~~~~~~f~G~S~I~-p~G 251 (532)
+|||+|+.|=. +.|..+.. ....+.++..|.+++++++.-.. ...+..+.+| -.++++ |+|
T Consensus 41 ~gadlivfPE~~ltGy~~~~~~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~G~~e~~~~~~~~~y-Nsa~~i~~~G 119 (294)
T cd07582 41 LPVRLVVLPEYALQGFPMGEPREVWQFDKAAIDIPGPETEALGEKAKELNVYIAANAYERDPDFPGLYF-NTAFIIDPSG 119 (294)
T ss_pred CCceEEEcCccccccCCcccchhhhhhhhccccCCCHHHHHHHHHHHHcCEEEEEeeeeecCCCCCcEE-EEEEEECCCC
Confidence 47999998832 22322211 01346677889999888765332 1111012334 334555 899
Q ss_pred eEEEe
Q 009550 252 DMIAQ 256 (532)
Q Consensus 252 ~ila~ 256 (532)
+++..
T Consensus 120 ~i~~~ 124 (294)
T cd07582 120 EIILR 124 (294)
T ss_pred cEEEE
Confidence 98864
No 157
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=40.52 E-value=98 Score=30.08 Aligned_cols=71 Identities=15% Similarity=0.099 Sum_probs=40.1
Q ss_pred HHHHHhCCCeEEEEcCCC--Cccccch----------HHHHHHHHHHHHHcCcEEEEEcCcCCCCCceeeeccEEEE-eC
Q 009550 184 HADLALNGVEVFMNASGS--HHQLRKL----------DYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVV-VN 250 (532)
Q Consensus 184 ~~~la~~GadlIl~psas--~~~~g~~----------~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~f~G~S~I~-p~ 250 (532)
.+.++.+|+|+|+.|=.+ .+..+.. ....+.++..|.+++++++.--. -...++..| =+++++ |+
T Consensus 23 i~~a~~~g~dlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~-~~~~~~~~y-Ns~~~i~~~ 100 (255)
T cd07581 23 LAEAAAAGADLVVFPEYTMARFGDGLDDYARVAEPLDGPFVSALARLARELGITVVAGMF-EPAGDGRVY-NTLVVVGPD 100 (255)
T ss_pred HHHHHHcCCCEEECcchhcCCCCcchhhHHhhhccCCCHHHHHHHHHHHHcCeEEEEEee-eeCCCCcEE-EeEEEECCC
Confidence 445677899999998432 2222111 12345577788888887765322 111111233 344555 99
Q ss_pred CeEEEe
Q 009550 251 GDMIAQ 256 (532)
Q Consensus 251 G~ila~ 256 (532)
|+++..
T Consensus 101 G~i~~~ 106 (255)
T cd07581 101 GEIIAV 106 (255)
T ss_pred CcEEEE
Confidence 998764
No 158
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=39.29 E-value=67 Score=32.39 Aligned_cols=64 Identities=16% Similarity=0.166 Sum_probs=43.4
Q ss_pred ccCCCCChHHHHHHhCCCeEEEEcCCCCccccch----HHH-------HHHHHHHHHHcCcEEEEEcCcCCCCCceeeec
Q 009550 175 EELFTPIPPHADLALNGVEVFMNASGSHHQLRKL----DYR-------IRAFISATHSRGGVYMYSNHQGCDGGRLYFDG 243 (532)
Q Consensus 175 ~D~~~pe~~~~~la~~GadlIl~psas~~~~g~~----~~~-------~~l~~~rA~e~~~~vv~aN~~G~~~~~~~f~G 243 (532)
.|++.++.+.+.+.....|+|+|..+... ..+. +.. -.-+...+.+.|.++|+.+ +++||+|
T Consensus 34 ~Ditd~~~v~~~i~~~~PDvVIn~AAyt~-vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lVhiS------TDyVFDG 106 (281)
T COG1091 34 LDITDPDAVLEVIRETRPDVVINAAAYTA-VDKAESEPELAFAVNATGAENLARAAAEVGARLVHIS------TDYVFDG 106 (281)
T ss_pred ccccChHHHHHHHHhhCCCEEEECccccc-cccccCCHHHHHHhHHHHHHHHHHHHHHhCCeEEEee------cceEecC
Confidence 58888876776777778999999987542 1111 111 1234556788899999886 5788888
Q ss_pred cE
Q 009550 244 CS 245 (532)
Q Consensus 244 ~S 245 (532)
.-
T Consensus 107 ~~ 108 (281)
T COG1091 107 EK 108 (281)
T ss_pred CC
Confidence 54
No 159
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=37.48 E-value=1.2e+02 Score=30.00 Aligned_cols=62 Identities=18% Similarity=0.227 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhhHHHHHHHHHHhcccCCCeEEEE
Q 009550 18 FDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCSF 85 (532)
Q Consensus 18 ~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~iiv 85 (532)
.+..++.+.+.++.|+.-|++.+++.- |.... ...........+.+.++++.++++++.+.+
T Consensus 80 r~~~~~~~~~~i~~A~~lG~~~v~~~~----g~~~~--~~~~~~~~~~~~~l~~l~~~a~~~gi~l~l 141 (279)
T cd00019 80 REKSIERLKDEIERCEELGIRLLVFHP----GSYLG--QSKEEGLKRVIEALNELIDKAETKGVVIAL 141 (279)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECC----CCCCC--CCHHHHHHHHHHHHHHHHHhccCCCCEEEE
Confidence 566788889999999999999888732 22211 111233344566788888877788887654
No 160
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=36.52 E-value=1.5e+02 Score=28.85 Aligned_cols=70 Identities=11% Similarity=0.107 Sum_probs=38.6
Q ss_pred HHHHhCCCeEEEEcCCC--Cccccc------------hHHHHHHHHHHHHHcCcEEEEEcC-cCCCCCceeeeccEEEE-
Q 009550 185 ADLALNGVEVFMNASGS--HHQLRK------------LDYRIRAFISATHSRGGVYMYSNH-QGCDGGRLYFDGCSCVV- 248 (532)
Q Consensus 185 ~~la~~GadlIl~psas--~~~~g~------------~~~~~~l~~~rA~e~~~~vv~aN~-~G~~~~~~~f~G~S~I~- 248 (532)
+..+.+|+|+|+.|-.+ .+.... .....+.++..|.+++++++.-.. .... .+.+| -+.+++
T Consensus 26 ~~a~~~ga~liv~PE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~G~~~~~~~-~~~~~-Ns~~~i~ 103 (258)
T cd07584 26 KEAAAEGADLICFPELATTGYRPDLLGPKLWELSEPIDGPTVRLFSELAKELGVYIVCGFVEKGGV-PGKVY-NSAVVID 103 (258)
T ss_pred HHHHHcCCCEEEcccccccCCCccccchhhHhhccCCCCcHHHHHHHHHHHcCeEEEEeehcccCC-CCceE-EEEEEEC
Confidence 34557899999998432 221110 011245577788899887765432 1111 12233 345555
Q ss_pred eCCeEEEe
Q 009550 249 VNGDMIAQ 256 (532)
Q Consensus 249 p~G~ila~ 256 (532)
|+|+++..
T Consensus 104 ~~G~i~~~ 111 (258)
T cd07584 104 PEGESLGV 111 (258)
T ss_pred CCCCEEeE
Confidence 89988644
No 161
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=35.45 E-value=85 Score=25.87 Aligned_cols=43 Identities=12% Similarity=0.172 Sum_probs=31.3
Q ss_pred HhCCCeEEEEcCCCCccccchHHHHHHHHHHHHHcCcEEEEEcCcCCC
Q 009550 188 ALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCD 235 (532)
Q Consensus 188 a~~GadlIl~psas~~~~g~~~~~~~l~~~rA~e~~~~vv~aN~~G~~ 235 (532)
..+.||++++++..-- ......++..|.+++.|+++++..|.+
T Consensus 45 ~i~~aD~VIv~t~~vs-----H~~~~~vk~~akk~~ip~~~~~~~~~~ 87 (97)
T PF10087_consen 45 KIKKADLVIVFTDYVS-----HNAMWKVKKAAKKYGIPIIYSRSRGVS 87 (97)
T ss_pred hcCCCCEEEEEeCCcC-----hHHHHHHHHHHHHcCCcEEEECCCCHH
Confidence 4567999999986321 122345788899999999999976643
No 162
>PLN02798 nitrilase
Probab=35.03 E-value=1.4e+02 Score=29.73 Aligned_cols=71 Identities=10% Similarity=0.127 Sum_probs=39.3
Q ss_pred HHHHHhCCCeEEEEcCCCC---cccc--------chHHHHHHHHHHHHHcCcEEEEE--cCcCCCCCceeeeccEEEE-e
Q 009550 184 HADLALNGVEVFMNASGSH---HQLR--------KLDYRIRAFISATHSRGGVYMYS--NHQGCDGGRLYFDGCSCVV-V 249 (532)
Q Consensus 184 ~~~la~~GadlIl~psas~---~~~g--------~~~~~~~l~~~rA~e~~~~vv~a--N~~G~~~~~~~f~G~S~I~-p 249 (532)
.+..+.+|||||+.|=.+. +... ........++..|.+++++++.. .....+ ++..| -+++++ |
T Consensus 35 i~~A~~~gadlvvfPE~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~A~~~~i~iv~G~~~~~~~~-~~~~y-Ns~~vi~~ 112 (286)
T PLN02798 35 AKEAAAAGAKLLFLPECFSFIGDKDGESLAIAEPLDGPIMQRYRSLARESGLWLSLGGFQEKGPD-DSHLY-NTHVLIDD 112 (286)
T ss_pred HHHHHHCCCCEEEcCCCccccCcCchhhhhhcccCCCHHHHHHHHHHHHcCeEEEEeeeEcccCC-CCceE-EEEEEECC
Confidence 3455678999999986421 1100 00123456677888998887632 212111 12233 345566 8
Q ss_pred CCeEEEe
Q 009550 250 NGDMIAQ 256 (532)
Q Consensus 250 ~G~ila~ 256 (532)
+|+++..
T Consensus 113 ~G~i~~~ 119 (286)
T PLN02798 113 SGEIRSS 119 (286)
T ss_pred CCCEEEE
Confidence 9998753
No 163
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=33.38 E-value=1.4e+02 Score=29.18 Aligned_cols=64 Identities=13% Similarity=-0.088 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhhHHHHHHHHHHhcccCCCeEEEE
Q 009550 17 DFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCSF 85 (532)
Q Consensus 17 d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~iiv 85 (532)
+.+...+.+.+.++.|..-|+..|+.| +|+.+.+.. ..+..+...+.+.++++.+++.|+.+.+
T Consensus 79 ~~~~~~~~~~~~i~~a~~lga~~i~~~----~g~~~~~~~-~~~~~~~~~~~l~~l~~~a~~~Gv~l~l 142 (258)
T PRK09997 79 REEEFRDGVAAAIRYARALGNKKINCL----VGKTPAGFS-SEQIHATLVENLRYAANMLMKEDILLLI 142 (258)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCEEEEC----CCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 345566778888999999999987653 344332211 1222334455677777766677876543
No 164
>cd07576 R-amidase_like Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl
Probab=33.26 E-value=1.6e+02 Score=28.55 Aligned_cols=70 Identities=11% Similarity=0.168 Sum_probs=39.2
Q ss_pred HHHHHhCCCeEEEEcCCC--Cccccc---------hHHHHHHHHHHHHHcCcEEEEEcCcCCCCCceeeeccEEEE-eCC
Q 009550 184 HADLALNGVEVFMNASGS--HHQLRK---------LDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVV-VNG 251 (532)
Q Consensus 184 ~~~la~~GadlIl~psas--~~~~g~---------~~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~f~G~S~I~-p~G 251 (532)
.+.++.+|+|+++.|-.+ .+..+. .....+.++..|.+++++++.--.. .. ++..| -+++++ |+|
T Consensus 25 i~~a~~~ga~lvv~PE~~l~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~-~~-~~~~y-Ns~~~i~~~G 101 (254)
T cd07576 25 AARAAAAGADLLVFPELFLTGYNIGDAVARLAEPADGPALQALRAIARRHGIAIVVGYPE-RA-GGAVY-NAAVLIDEDG 101 (254)
T ss_pred HHHHHHcCCCEEEccCccccCCCCcchhhhhhcccCChHHHHHHHHHHHcCCEEEEeccc-cC-CCceE-EEEEEECCCC
Confidence 345667899999998432 222211 1123455677888888877654221 11 12233 334555 899
Q ss_pred eEEEe
Q 009550 252 DMIAQ 256 (532)
Q Consensus 252 ~ila~ 256 (532)
+++..
T Consensus 102 ~i~~~ 106 (254)
T cd07576 102 TVLAN 106 (254)
T ss_pred CEeeE
Confidence 97643
No 165
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=31.97 E-value=1.4e+02 Score=28.95 Aligned_cols=69 Identities=13% Similarity=0.025 Sum_probs=39.3
Q ss_pred ceEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhhHHHHHHHHHHhcccCCCeE
Q 009550 3 LLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGIL 82 (532)
Q Consensus 3 ~~rVAlvQ~~~~~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~ 82 (532)
.+||+++. |+-+|..++.+.++.+.+.++|+||. ++|+.....-.+...+.++.+.+. ...++
T Consensus 4 ~~kIl~iS------DiHgn~~~le~l~~~~~~~~~D~vv~---------~GDl~~~g~~~~~~~~~l~~l~~l--~~pv~ 66 (224)
T cd07388 4 VRYVLATS------NPKGDLEALEKLVGLAPETGADAIVL---------IGNLLPKAAKSEDYAAFFRILGEA--HLPTF 66 (224)
T ss_pred eeEEEEEE------ecCCCHHHHHHHHHHHhhcCCCEEEE---------CCCCCCCCCCHHHHHHHHHHHHhc--CCceE
Confidence 46666654 45567777777777777789998874 234332111122333445555542 13467
Q ss_pred EEEcee
Q 009550 83 CSFGMP 88 (532)
Q Consensus 83 iivG~~ 88 (532)
++.|..
T Consensus 67 ~V~GNh 72 (224)
T cd07388 67 YVPGPQ 72 (224)
T ss_pred EEcCCC
Confidence 777754
No 166
>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases). Saccharomyces cerevisiae NTA1 functions in the N-end rule protein degradation pathway. It specifically deaminates the N-terminal asparagine and glutamine residues of substrates of this pathway, to aspartate and glutamate respectively, these latter are the destabilizing residues. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 3.
Probab=31.80 E-value=2.1e+02 Score=28.89 Aligned_cols=66 Identities=6% Similarity=0.051 Sum_probs=36.3
Q ss_pred CCCeEEEEcCC--CCccccchH------------HHHHHHHHHHHHcCcEEEEEcC-cCCCCCceeeeccEEEE-eCCeE
Q 009550 190 NGVEVFMNASG--SHHQLRKLD------------YRIRAFISATHSRGGVYMYSNH-QGCDGGRLYFDGCSCVV-VNGDM 253 (532)
Q Consensus 190 ~GadlIl~psa--s~~~~g~~~------------~~~~l~~~rA~e~~~~vv~aN~-~G~~~~~~~f~G~S~I~-p~G~i 253 (532)
+|+|||+.|=. ++|...... ...+.++..|.+++++++.-.. ....+.+..| -+++++ |+|++
T Consensus 35 ~gadLIVfPEl~ltGY~~~~~~~~~~~ae~~~~g~~~~~l~~lAk~~~i~Iv~G~~e~~~~~~~~~y-Nta~vi~~~G~i 113 (295)
T cd07566 35 KKPDILVLPELALTGYNFHSLEHIKPYLEPTTSGPSFEWAREVAKKFNCHVVIGYPEKVDESSPKLY-NSALVVDPEGEV 113 (295)
T ss_pred CCCcEEEcCCCCcccCCcccHHHHHHHHHhcCCCHHHHHHHHHHHhcCCEEEEeeeEecCCCCCceE-EEEEEEcCCCeE
Confidence 79999999843 233221110 1224556778888988765322 1111001233 456666 89998
Q ss_pred EEe
Q 009550 254 IAQ 256 (532)
Q Consensus 254 la~ 256 (532)
++.
T Consensus 114 i~~ 116 (295)
T cd07566 114 VFN 116 (295)
T ss_pred EEE
Confidence 754
No 167
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=31.42 E-value=1.1e+02 Score=28.36 Aligned_cols=63 Identities=19% Similarity=0.066 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhhHHHHHHHHHHhcccCCCeEEEE
Q 009550 20 CNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCSF 85 (532)
Q Consensus 20 ~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~iiv 85 (532)
.-++.+.+.++.|+.-|++.++++=.. |............+...+.+.++++.++++++.+.+
T Consensus 68 ~~~~~~~~~i~~a~~lg~~~i~~~~g~---~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~l 130 (213)
T PF01261_consen 68 EALEYLKKAIDLAKRLGAKYIVVHSGR---YPSGPEDDTEENWERLAENLRELAEIAEEYGVRIAL 130 (213)
T ss_dssp HHHHHHHHHHHHHHHHTBSEEEEECTT---ESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCceeecCcc---cccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEE
Confidence 337788888988988999999887211 111111111233444556677777777678876643
No 168
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t
Probab=31.01 E-value=1.7e+02 Score=28.55 Aligned_cols=72 Identities=13% Similarity=0.108 Sum_probs=39.4
Q ss_pred HHHHHhCCCeEEEEcCCC--Cccccc----------hHHHHHHHHHHHHHcCcEEEEEcCcCCCC-CceeeeccEEEE-e
Q 009550 184 HADLALNGVEVFMNASGS--HHQLRK----------LDYRIRAFISATHSRGGVYMYSNHQGCDG-GRLYFDGCSCVV-V 249 (532)
Q Consensus 184 ~~~la~~GadlIl~psas--~~~~g~----------~~~~~~l~~~rA~e~~~~vv~aN~~G~~~-~~~~f~G~S~I~-p 249 (532)
.+..+.+|+|+|+.|=.+ ++.... .....+.++..|.+++++++.-...-... ++..| -+++++ |
T Consensus 24 i~~A~~~g~dlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~G~~~~~~~~~~~~y-Ns~~~i~~ 102 (265)
T cd07572 24 IEEAAAQGAKLVVLPECFNYPGGTDAFKLALAEEEGDGPTLQALSELAKEHGIWLVGGSIPERDDDDGKVY-NTSLVFDP 102 (265)
T ss_pred HHHHHHCCCCEEECCccccCcCcchhhhhhhhccccCChHHHHHHHHHHHCCeEEEEeeeccccCCCCcEE-EEEEEECC
Confidence 345567899999998442 221110 01234567778889988776532211110 12233 344555 8
Q ss_pred CCeEEEe
Q 009550 250 NGDMIAQ 256 (532)
Q Consensus 250 ~G~ila~ 256 (532)
+|+++..
T Consensus 103 ~G~i~~~ 109 (265)
T cd07572 103 DGELVAR 109 (265)
T ss_pred CCeEEeE
Confidence 9998653
No 169
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases). CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.
Probab=30.64 E-value=1.7e+02 Score=28.87 Aligned_cols=71 Identities=13% Similarity=0.124 Sum_probs=39.2
Q ss_pred HHHHHhCCCeEEEEcCC--CCccccc-------------hHHHHHHHHHHHHHcCcEEEEEcCcCCCCCceeeeccEEEE
Q 009550 184 HADLALNGVEVFMNASG--SHHQLRK-------------LDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVV 248 (532)
Q Consensus 184 ~~~la~~GadlIl~psa--s~~~~g~-------------~~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~f~G~S~I~ 248 (532)
.+.++.+|||+|+.|=. +++..+. .....+.++..|.+++++++.... -...++ .+.-..+++
T Consensus 25 i~~A~~~gadlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~i~iv~g~~-~~~~~~-~~yNs~~v~ 102 (284)
T cd07573 25 VREAAAQGAQIVCLQELFETPYFCQEEDEDYFDLAEPPIPGPTTARFQALAKELGVVIPVSLF-EKRGNG-LYYNSAVVI 102 (284)
T ss_pred HHHHHHCCCcEEEccccccCCCCcccccchhHHhccccCCCHHHHHHHHHHHHCCEEEEecce-eeCCCC-cEEEEEEEE
Confidence 44566789999999842 3332111 012235677788888887765321 111011 222345556
Q ss_pred -eCCeEEEe
Q 009550 249 -VNGDMIAQ 256 (532)
Q Consensus 249 -p~G~ila~ 256 (532)
|+|+++..
T Consensus 103 ~~~G~i~~~ 111 (284)
T cd07573 103 DADGSLLGV 111 (284)
T ss_pred CCCCCEEeE
Confidence 89987654
No 170
>PLN00202 beta-ureidopropionase
Probab=28.74 E-value=1.8e+02 Score=30.96 Aligned_cols=71 Identities=13% Similarity=0.191 Sum_probs=40.1
Q ss_pred HHHHhCCCeEEEEcCC--CCcccc---c-h--------HHHHHHHHHHHHHcCcEEEEEc-CcCCCCCceeeeccEEEE-
Q 009550 185 ADLALNGVEVFMNASG--SHHQLR---K-L--------DYRIRAFISATHSRGGVYMYSN-HQGCDGGRLYFDGCSCVV- 248 (532)
Q Consensus 185 ~~la~~GadlIl~psa--s~~~~g---~-~--------~~~~~l~~~rA~e~~~~vv~aN-~~G~~~~~~~f~G~S~I~- 248 (532)
+.++.+|||+|+.|=. .|+... + . ....+.++..|.+++++++.-= -.....++.+| -.++++
T Consensus 120 ~~Aa~~gadLVvfPE~~~~g~~~~~~~~~~~~~ae~~~g~~~~~l~~lA~~~~i~Iv~G~~e~~~~~~~~~y-NSa~vI~ 198 (405)
T PLN00202 120 DAAGAAGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTKFLQELARKYNMVIVSPILERDVNHGETLW-NTAVVIG 198 (405)
T ss_pred HHHHHCCCCEEEecchhccccccccccchHHHHhhhCCCHHHHHHHHHHHHCCeEEEEEeeeeecCCCCcEE-EEEEEEC
Confidence 3456789999999853 343210 0 1 0124567788899999887421 01111012233 445566
Q ss_pred eCCeEEEe
Q 009550 249 VNGDMIAQ 256 (532)
Q Consensus 249 p~G~ila~ 256 (532)
++|+++..
T Consensus 199 ~~G~iig~ 206 (405)
T PLN00202 199 NNGNIIGK 206 (405)
T ss_pred CCCcEEEE
Confidence 99998755
No 171
>COG0363 NagB 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]
Probab=28.70 E-value=57 Score=32.05 Aligned_cols=34 Identities=32% Similarity=0.359 Sum_probs=27.7
Q ss_pred CCcHHHHhcchhhHHHHHHHHhCCC--eEEEeccCc
Q 009550 325 HSPEEEIAFGPGCWLWDYLRRSGAS--GFLLPLSGG 358 (532)
Q Consensus 325 ~~~~~~~~~~~~~~L~~~l~~~~~~--~~~l~lSGG 358 (532)
+...+++.++.+..+.+++.+...+ .+.|+||||
T Consensus 6 ~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~l~LsgG 41 (238)
T COG0363 6 FEDAEELAKAAAEIIADKLQAAKAERGRAVLALSGG 41 (238)
T ss_pred cCCHHHHHHHHHHHHHHHHHhhhhccCcEEEEECCC
Confidence 4455788888899999999987533 699999999
No 172
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=27.94 E-value=1e+02 Score=30.03 Aligned_cols=77 Identities=21% Similarity=0.127 Sum_probs=50.5
Q ss_pred HHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhhHHHHHHHHHHhcccCCCeEEE-EceeeeeCCeeeEEEEEEeCCE
Q 009550 28 SIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCS-FGMPVIKGSERYNCQVLCLNRK 106 (532)
Q Consensus 28 ~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~ii-vG~~~~~~~~lyNsa~vi~~G~ 106 (532)
.|.+|..-.+++++|=|-. ..++|++..+..+.+..||+. ++..+ |-.-...-...-+..+++++|+
T Consensus 146 AIARALaM~P~vmLFDEPT--------SALDPElv~EVL~vm~~LA~e----GmTMivVTHEM~FAr~VadrviFmd~G~ 213 (240)
T COG1126 146 AIARALAMDPKVMLFDEPT--------SALDPELVGEVLDVMKDLAEE----GMTMIIVTHEMGFAREVADRVIFMDQGK 213 (240)
T ss_pred HHHHHHcCCCCEEeecCCc--------ccCCHHHHHHHHHHHHHHHHc----CCeEEEEechhHHHHHhhheEEEeeCCE
Confidence 4667777789999999953 235577888888888888874 54443 3221122234556778889999
Q ss_pred EEEEEecccC
Q 009550 107 IIMIRPKLWL 116 (532)
Q Consensus 107 il~~y~K~~L 116 (532)
|+.......+
T Consensus 214 iie~g~p~~~ 223 (240)
T COG1126 214 IIEEGPPEEF 223 (240)
T ss_pred EEEecCHHHH
Confidence 8876644433
No 173
>PRK15018 1-acyl-sn-glycerol-3-phosphate acyltransferase; Provisional
Probab=27.73 E-value=74 Score=31.33 Aligned_cols=33 Identities=18% Similarity=0.055 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcC
Q 009550 16 LDFDCNLKNIKESIGRAKEAGAVIRLGPELEIT 48 (532)
Q Consensus 16 ~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~lt 48 (532)
++...+.+.+.+.++...+.|..+++|||-.-+
T Consensus 119 ~~~~~~~~~l~~~~~~l~~~g~sv~IFPEGTRs 151 (245)
T PRK15018 119 NNRTKAHGTIAEVVNHFKKRRISIWMFPEGTRS 151 (245)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEECCccCC
Confidence 455556666666666666778899999998654
No 174
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases). These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking
Probab=27.63 E-value=2e+02 Score=29.13 Aligned_cols=17 Identities=6% Similarity=0.026 Sum_probs=13.4
Q ss_pred HHHHHHHHHHcCcEEEE
Q 009550 212 IRAFISATHSRGGVYMY 228 (532)
Q Consensus 212 ~~l~~~rA~e~~~~vv~ 228 (532)
.+.++..|++++++++.
T Consensus 90 ~~~l~~lAr~~~i~Iv~ 106 (299)
T cd07567 90 LQRLSCAARENSIYVVA 106 (299)
T ss_pred HHHHHHHHHHhCeEEEe
Confidence 45677888999998875
No 175
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=27.40 E-value=3.1e+02 Score=26.61 Aligned_cols=59 Identities=12% Similarity=-0.087 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhhHHHHHHHHHHhcccCCCeEEEE
Q 009550 22 LKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCSF 85 (532)
Q Consensus 22 ~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~iiv 85 (532)
.+.+.+.++.|+.-|+..|.++ +|..+.+.. ..+..+...+.+.++++.+++.|+.+.+
T Consensus 83 ~~~~~~~i~~a~~lg~~~i~~~----~g~~~~~~~-~~~~~~~~~~~l~~l~~~A~~~gi~l~l 141 (254)
T TIGR03234 83 REGVALAIAYARALGCPQVNCL----AGKRPAGVS-PEEARATLVENLRYAADALDRIGLTLLI 141 (254)
T ss_pred HHHHHHHHHHHHHhCCCEEEEC----cCCCCCCCC-HHHHHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 4566778888888899887653 343332211 1222233445677777666678876644
No 176
>KOG3147 consensus 6-phosphogluconolactonase - like protein [Carbohydrate transport and metabolism]
Probab=26.34 E-value=63 Score=31.72 Aligned_cols=35 Identities=29% Similarity=0.351 Sum_probs=25.0
Q ss_pred CCCcHHHHhcchhhHHHHHHHHhCCC--eEEEeccCc
Q 009550 324 YHSPEEEIAFGPGCWLWDYLRRSGAS--GFLLPLSGG 358 (532)
Q Consensus 324 ~~~~~~~~~~~~~~~L~~~l~~~~~~--~~~l~lSGG 358 (532)
.|...+++..+++.++.+...+.-.+ .|.|+||||
T Consensus 13 v~~~~~el~~~l~~~~~~~s~~~~~~~g~F~i~lSGG 49 (252)
T KOG3147|consen 13 VFSSEEELIEALAGYIAEKSEKALKKRGRFTLALSGG 49 (252)
T ss_pred ecccHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCC
Confidence 35666788888877776655553333 499999999
No 177
>PLN02747 N-carbamolyputrescine amidase
Probab=26.24 E-value=1.9e+02 Score=28.98 Aligned_cols=70 Identities=9% Similarity=-0.001 Sum_probs=38.6
Q ss_pred HHHHHhCCCeEEEEcCCC--Ccccc----c---------hHHHHHHHHHHHHHcCcEEEEEcCcCCCCCceeeeccEEEE
Q 009550 184 HADLALNGVEVFMNASGS--HHQLR----K---------LDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVV 248 (532)
Q Consensus 184 ~~~la~~GadlIl~psas--~~~~g----~---------~~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~f~G~S~I~ 248 (532)
.+..+..|||+|+.|=.+ ++... . .......+...|.+++++++..- .... ++..| -..+++
T Consensus 31 i~~A~~~gadlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~-~~~~-~~~~y-Ns~~~i 107 (296)
T PLN02747 31 VREAHAKGANIILIQELFEGYYFCQAQREDFFQRAKPYEGHPTIARMQKLAKELGVVIPVSF-FEEA-NNAHY-NSIAII 107 (296)
T ss_pred HHHHHHCCCcEEEcccccCCCCCccccccchhhhcccCCCChHHHHHHHHHHHcCeEEEeee-eecC-CCceE-EEEEEE
Confidence 445667899999998432 22111 0 01233457778889988776432 1111 22233 334555
Q ss_pred -eCCeEEEe
Q 009550 249 -VNGDMIAQ 256 (532)
Q Consensus 249 -p~G~ila~ 256 (532)
|+|++++.
T Consensus 108 ~~~G~i~~~ 116 (296)
T PLN02747 108 DADGTDLGL 116 (296)
T ss_pred CCCCCCcce
Confidence 89988644
No 178
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=25.90 E-value=2.7e+02 Score=26.93 Aligned_cols=69 Identities=13% Similarity=0.150 Sum_probs=38.3
Q ss_pred HHHHhCCCeEEEEcCCC--Cccccc--------hHHHHHHHHHHHHHcCcEEEEEcC-cCCCCCceeeeccEEEE-eCCe
Q 009550 185 ADLALNGVEVFMNASGS--HHQLRK--------LDYRIRAFISATHSRGGVYMYSNH-QGCDGGRLYFDGCSCVV-VNGD 252 (532)
Q Consensus 185 ~~la~~GadlIl~psas--~~~~g~--------~~~~~~l~~~rA~e~~~~vv~aN~-~G~~~~~~~f~G~S~I~-p~G~ 252 (532)
...+.+|+|+|+.|-.+ .+.... .....+.++..|.+++++++.-.. .-. ++..| -+++++ |+|+
T Consensus 26 ~~A~~~g~dlvv~PE~~l~g~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~G~~~~~~--~~~~y-Ns~~~i~~~G~ 102 (253)
T cd07583 26 EEAAAAGADLIVLPEMWNTGYFLDDLYELADEDGGETVSFLSELAKKHGVNIVAGSVAEKE--GGKLY-NTAYVIDPDGE 102 (253)
T ss_pred HHHHHCCCCEEEcCCccCCCCChhhHHhhhcccCchHHHHHHHHHHHcCcEEEeceEEecC--CCcEE-EEEEEECCCCc
Confidence 44567899999999432 221111 012345677788888888774321 111 12223 334555 8998
Q ss_pred EEEe
Q 009550 253 MIAQ 256 (532)
Q Consensus 253 ila~ 256 (532)
++..
T Consensus 103 i~~~ 106 (253)
T cd07583 103 LIAT 106 (253)
T ss_pred EEEE
Confidence 8754
No 179
>smart00642 Aamy Alpha-amylase domain.
Probab=25.88 E-value=1.4e+02 Score=27.45 Aligned_cols=68 Identities=19% Similarity=0.185 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHCCCeEEEcCCC--------CcCCCCCCcccccchhhhHHHHHHHHHHhcccCCCeEEEEceeee
Q 009550 22 LKNIKESIGRAKEAGAVIRLGPEL--------EITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCSFGMPVI 90 (532)
Q Consensus 22 ~~~i~~~i~~A~~~gadLvVfPEl--------~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~iivG~~~~ 90 (532)
++.+.+.+...++.|++-|.++=. .-.||...+.+.-.+-.. ..+.+++|.++++++++-|++=++..
T Consensus 18 ~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~G-t~~d~~~lv~~~h~~Gi~vilD~V~N 93 (166)
T smart00642 18 LQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFG-TMEDFKELVDAAHARGIKVILDVVIN 93 (166)
T ss_pred HHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccC-CHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 444555555556689998876654 334666655543222111 24568888888888999887755443
No 180
>PLN02504 nitrilase
Probab=25.63 E-value=2.8e+02 Score=28.73 Aligned_cols=43 Identities=7% Similarity=0.086 Sum_probs=24.8
Q ss_pred HHHHHHHHHHcCcEEEEEcCcCCCCCceeeeccEEEE-eCCeEEEee
Q 009550 212 IRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVV-VNGDMIAQG 257 (532)
Q Consensus 212 ~~l~~~rA~e~~~~vv~aN~~G~~~~~~~f~G~S~I~-p~G~ila~~ 257 (532)
.+.++..|.+++++++.-... .. ++..| -+++++ |+|+++..-
T Consensus 107 i~~l~~~A~~~~i~iv~G~~e-~~-~~~~y-Nsa~~i~~~G~i~~~y 150 (346)
T PLN02504 107 VDRLAAMAGKYKVYLVMGVIE-RD-GYTLY-CTVLFFDPQGQYLGKH 150 (346)
T ss_pred HHHHHHHHHHcCCEEEEeeee-cC-CCceE-EEEEEECCCCCEEeEE
Confidence 345667788899887653221 11 12233 445555 899987543
No 181
>PRK12358 putative 6-phosphogluconolactonase; Provisional
Probab=25.59 E-value=66 Score=31.45 Aligned_cols=36 Identities=17% Similarity=0.294 Sum_probs=29.0
Q ss_pred CcHHHHhcchhhHHHHHHHHhCCCeEEEeccCchhHHH
Q 009550 326 SPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSS 363 (532)
Q Consensus 326 ~~~~~~~~~~~~~L~~~l~~~~~~~~~l~lSGGiDSa~ 363 (532)
...+++.+..+..+.+++.+. +.+.|+||||-.-..
T Consensus 7 ~~~~e~~~~~a~~i~~~i~~~--~~~~l~lsgG~tp~~ 42 (239)
T PRK12358 7 KDYEEMSRVAAHHLLGYMSKT--KRVNLAITAGSTPKG 42 (239)
T ss_pred CCHHHHHHHHHHHHHHHHHhC--CCeEEEECCCCCHHH
Confidence 345788888889999999886 479999999966554
No 182
>TIGR01198 pgl 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with
Probab=24.99 E-value=80 Score=30.75 Aligned_cols=35 Identities=26% Similarity=0.275 Sum_probs=22.8
Q ss_pred cHHHHhcchhhHHHHHHHH--hCCCeEEEeccCchhH
Q 009550 327 PEEEIAFGPGCWLWDYLRR--SGASGFLLPLSGGADS 361 (532)
Q Consensus 327 ~~~~~~~~~~~~L~~~l~~--~~~~~~~l~lSGGiDS 361 (532)
..+++..+++..+.+.+++ .....+.|+||||--=
T Consensus 4 ~~~~l~~~~a~~i~~~i~~~i~~~~~~~lalsGGstp 40 (233)
T TIGR01198 4 NSAELAEALAERIATKLQTALAERGQFSLALSGGRSP 40 (233)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCccH
Confidence 4456666666666666655 1124799999999543
No 183
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases). ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.
Probab=24.46 E-value=1.8e+02 Score=28.83 Aligned_cols=68 Identities=12% Similarity=0.227 Sum_probs=36.9
Q ss_pred HHHhCCCeEEEEcCCC--CccccchHHHHHHHHHHHHHcCcEEEEEcCcCCCCCceeeeccEEEE-eCCeEEE
Q 009550 186 DLALNGVEVFMNASGS--HHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVV-VNGDMIA 255 (532)
Q Consensus 186 ~la~~GadlIl~psas--~~~~g~~~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~f~G~S~I~-p~G~ila 255 (532)
..+.+|||+++.|=.+ .+. .......+.++..|.+++++++.-...-....+..| -.++++ |+|+++.
T Consensus 34 ~a~~~ga~lvvfPE~~l~g~~-~~~~~~~~~l~~~ak~~~i~ii~G~~~~~~~~~~~~-Ns~~~i~~~G~i~~ 104 (270)
T cd07571 34 ELADEKPDLVVWPETALPFDL-QRDPDALARLARAARAVGAPLLTGAPRREPGGGRYY-NSALLLDPGGGILG 104 (270)
T ss_pred hcccCCCCEEEecCCcCCccc-ccCHHHHHHHHHHHHhcCCeEEEeeeeeccCCCceE-EEEEEECCCCCCcC
Confidence 3445699999998442 221 111233466777888899987653321111011223 334455 8898653
No 184
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=24.41 E-value=5.1e+02 Score=25.16 Aligned_cols=71 Identities=11% Similarity=-0.012 Sum_probs=41.4
Q ss_pred eeEEeCCceEEEEeeccCCCC----------------------------ChH---HHHHHhCCCeEEEEcCCCCccccc-
Q 009550 160 GFIQFLDTAVAAEICEELFTP----------------------------IPP---HADLALNGVEVFMNASGSHHQLRK- 207 (532)
Q Consensus 160 ~vf~~~~~riGv~IC~D~~~p----------------------------e~~---~~~la~~GadlIl~psas~~~~g~- 207 (532)
.++++++.|||++-+.+.... +.. .+. +++++|++++..-|......
T Consensus 122 ~i~~~~g~kia~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~-~r~~~D~vIv~~HwG~e~~~~ 200 (250)
T PF09587_consen 122 AIIEVNGVKIAFLGYTDGENGYSSANGNRPYGFSYRPDKAGLNPNRPGIERIKEDIRE-ARKKADVVIVSLHWGIEYENY 200 (250)
T ss_pred EEEEECCEEEEEEEEEcCCCCCccccccccccccccccccccccccchHHHHHHHHHH-HhcCCCEEEEEeccCCCCCCC
Confidence 378899999999887544310 001 122 23689999988766533221
Q ss_pred hHHHHHHHHHHHHHcCcEEEEEcC
Q 009550 208 LDYRIRAFISATHSRGGVYMYSNH 231 (532)
Q Consensus 208 ~~~~~~l~~~rA~e~~~~vv~aN~ 231 (532)
...+.+.+....++.|.-+|..+.
T Consensus 201 p~~~q~~~a~~lidaGaDiIiG~H 224 (250)
T PF09587_consen 201 PTPEQRELARALIDAGADIIIGHH 224 (250)
T ss_pred CCHHHHHHHHHHHHcCCCEEEeCC
Confidence 122333445555667777776665
No 185
>PRK09762 galactosamine-6-phosphate isomerase; Provisional
Probab=23.28 E-value=78 Score=30.82 Aligned_cols=33 Identities=15% Similarity=0.177 Sum_probs=26.6
Q ss_pred CcHHHHhcchhhHHHHHHHHhCCCeEEEeccCchh
Q 009550 326 SPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGAD 360 (532)
Q Consensus 326 ~~~~~~~~~~~~~L~~~l~~~~~~~~~l~lSGGiD 360 (532)
...+++.+.++..|.+.+++.+ .+.|+||||-=
T Consensus 7 ~~~~~~~~~~a~~i~~~i~~~~--~~~l~lsgGst 39 (232)
T PRK09762 7 ENYTALSERASEYLLAVIRSKP--DAVICLATGAT 39 (232)
T ss_pred CCHHHHHHHHHHHHHHHHHHCC--CeEEEECCCCC
Confidence 4457888888888999988864 78999999953
No 186
>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases). Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their active site residues into different unrelated classes. This class of GAT domain belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this sub
Probab=23.14 E-value=2.2e+02 Score=27.67 Aligned_cols=17 Identities=6% Similarity=0.075 Sum_probs=12.8
Q ss_pred HHHHHhCCCeEEEEcCC
Q 009550 184 HADLALNGVEVFMNASG 200 (532)
Q Consensus 184 ~~~la~~GadlIl~psa 200 (532)
.+..+.+|||+|+.|-.
T Consensus 25 i~~A~~~gadlvvfPE~ 41 (261)
T cd07570 25 IREAKAQGADLVVFPEL 41 (261)
T ss_pred HHHHHHcCCCEEEccch
Confidence 34556789999999943
No 187
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=21.90 E-value=3.1e+02 Score=26.24 Aligned_cols=69 Identities=13% Similarity=0.173 Sum_probs=38.3
Q ss_pred HHHHHhCCCeEEEEcCCC--Cccccc-----------hHHHHHHHHHHHHHcCcEEEEEcCcCCCCCceeeeccEEEE-e
Q 009550 184 HADLALNGVEVFMNASGS--HHQLRK-----------LDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVV-V 249 (532)
Q Consensus 184 ~~~la~~GadlIl~psas--~~~~g~-----------~~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~f~G~S~I~-p 249 (532)
.+..+.+|+|+|+.|-.+ .+..+. .....+.++..|.+++++++.-...- . ++..| -.++++ |
T Consensus 24 i~~a~~~g~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~ii~G~~~~-~-~~~~~-N~~~~i~~ 100 (253)
T cd07197 24 IKEAAEQGADLIVLPELFLTGYSFESAKEDLDLAEELDGPTLEALAELAKELGIYIVAGIAEK-D-GDKLY-NTAVVIDP 100 (253)
T ss_pred HHHHHHCCCCEEEcCCccccCCccccchhhhhhcccCCchHHHHHHHHHHHhCeEEEeeeEEc-c-CCceE-EEEEEECC
Confidence 345567899999998432 221110 12345667788888888776432211 1 12223 334555 8
Q ss_pred CCeEEE
Q 009550 250 NGDMIA 255 (532)
Q Consensus 250 ~G~ila 255 (532)
+|.++.
T Consensus 101 ~G~i~~ 106 (253)
T cd07197 101 DGEIIG 106 (253)
T ss_pred CCeEEE
Confidence 898654
No 188
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=21.47 E-value=2.7e+02 Score=29.13 Aligned_cols=71 Identities=13% Similarity=0.171 Sum_probs=38.8
Q ss_pred HHHHhCCCeEEEEcCCC--Cccc--c-c--h---------HHHHHHHHHHHHHcCcEEEEEcC-cCCCCCceeeeccEEE
Q 009550 185 ADLALNGVEVFMNASGS--HHQL--R-K--L---------DYRIRAFISATHSRGGVYMYSNH-QGCDGGRLYFDGCSCV 247 (532)
Q Consensus 185 ~~la~~GadlIl~psas--~~~~--g-~--~---------~~~~~l~~~rA~e~~~~vv~aN~-~G~~~~~~~f~G~S~I 247 (532)
+..+.+|||||+.|=.+ ++.+ . + . ....+.++..|.+++++++..-. .....++..| -.+++
T Consensus 97 ~~Aa~~gadLivfPE~~l~g~~~~~~~~~~~~~~ae~~~~g~~~~~l~~lAk~~~i~Iv~gi~e~~~~~~~~~y-Nta~v 175 (363)
T cd07587 97 EAAAMAGVNIICFQEAWTMPFAFCTREKLPWCEFAESAEDGPTTKFCQELAKKYNMVIVSPILERDEEHGDTIW-NTAVV 175 (363)
T ss_pred HHHHHcCCCEEEccccccCCccccccccchHHHHhhccCCChHHHHHHHHHHHcCcEEEEeeeeeecCCCCcEE-EEEEE
Confidence 34567899999998433 2211 0 0 0 01234577889999998864211 1110012344 34455
Q ss_pred E-eCCeEEEe
Q 009550 248 V-VNGDMIAQ 256 (532)
Q Consensus 248 ~-p~G~ila~ 256 (532)
+ |+|+++..
T Consensus 176 i~~~G~ilg~ 185 (363)
T cd07587 176 ISNSGNVLGK 185 (363)
T ss_pred ECCCCCEEee
Confidence 5 89998754
No 189
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=21.45 E-value=1.2e+03 Score=26.47 Aligned_cols=88 Identities=25% Similarity=0.366 Sum_probs=49.2
Q ss_pred HHHHHHHHHhCCceEEEecHHHHHH--------HHHHhHhhhCCCCCc---cc--CCCccccccchhhhhhhhhHHHHHH
Q 009550 429 MLAKKLADEIGSWHLDVSIDTVVSA--------FLSLFQTLTGKRPCY---KV--DGGSNVENLGLQNIQARIRMVLAFM 495 (532)
Q Consensus 429 ~~a~~la~~lg~~~~~i~i~~~~~~--------~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~N~qaR~R~~~l~~ 495 (532)
.-|+.+|.++|+++..|+-.+++.. +...|..+.+..|+. +. .-+++++. +-.-+--|+=.++|-.
T Consensus 238 ~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~-aqreMErRiVaQLlt~ 316 (802)
T KOG0733|consen 238 SLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE-AQREMERRIVAQLLTS 316 (802)
T ss_pred HHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhh-HHHHHHHHHHHHHHHh
Confidence 3588899999999999998887754 455666665555541 11 01222111 2222222333334433
Q ss_pred HhhcCccccCCC---CcEEEEcCCCcccc
Q 009550 496 LASLLPWVHNKP---GFYLVLGSSNVDEG 521 (532)
Q Consensus 496 ~a~~~~~~~~~~---~~~lvlgT~n~sE~ 521 (532)
+=. +++.. .+-||+|++|+-..
T Consensus 317 mD~----l~~~~~~g~~VlVIgATnRPDs 341 (802)
T KOG0733|consen 317 MDE----LSNEKTKGDPVLVIGATNRPDS 341 (802)
T ss_pred hhc----ccccccCCCCeEEEecCCCCcc
Confidence 332 33331 24699999998654
No 190
>PRK12677 xylose isomerase; Provisional
Probab=21.29 E-value=3.7e+02 Score=28.35 Aligned_cols=61 Identities=15% Similarity=0.040 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHCCCeE-EEcCCCCcCCCCCCccccc---chhhhHHHHHHHHHHhcccCC--CeEEE
Q 009550 19 DCNLKNIKESIGRAKEAGAVI-RLGPELEITGYGCEDHFLE---LDTVTHAWECLKDLLLGDWTD--GILCS 84 (532)
Q Consensus 19 ~~N~~~i~~~i~~A~~~gadL-vVfPEl~ltGy~~~d~~~~---~~~~~~~~~~l~~la~~~~~~--~i~ii 84 (532)
+..++.+++.|+.|++-|++. +++| |+...+...+ ....+...+.|.++++.+++. ++-+.
T Consensus 110 ~~Ai~~~~r~IdlA~eLGa~~Vvv~~-----G~~g~~~~~~~d~~~a~~~~~eaL~~l~~~A~~~G~gV~la 176 (384)
T PRK12677 110 RYALRKVLRNIDLAAELGAKTYVMWG-----GREGAEYDAAKDVRAALDRYREAIDLLAAYVKDQGYDLRFA 176 (384)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEee-----CCCCccCcccCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEE
Confidence 334777888999999999984 4554 3322111111 123334456677777766553 35543
No 191
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases). Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that
Probab=21.15 E-value=4.1e+02 Score=26.57 Aligned_cols=71 Identities=11% Similarity=0.208 Sum_probs=39.6
Q ss_pred HHHHHhCCCeEEEEcCCC--Ccccc---------ch-------------HHHHHHHHHHHHHcCcEEEEEcCcCCCCCce
Q 009550 184 HADLALNGVEVFMNASGS--HHQLR---------KL-------------DYRIRAFISATHSRGGVYMYSNHQGCDGGRL 239 (532)
Q Consensus 184 ~~~la~~GadlIl~psas--~~~~g---------~~-------------~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~ 239 (532)
.+.++.+|||+|+.|-.+ .+... .. ....+.++..|.+++++++..... .. ++.
T Consensus 26 i~~A~~~ga~lvvfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~-~~-~~~ 103 (297)
T cd07564 26 IEEAAANGAQLVVFPEAFIPGYPYWIWFGAPAEGRELFARYYENSVEVDGPELERLAEAARENGIYVVLGVSE-RD-GGT 103 (297)
T ss_pred HHHHHHCCCCEEEeccccccCCCchhhcCCcccchHHHHHHHHhCcCCCCHHHHHHHHHHHHcCcEEEEeeEe-cc-CCc
Confidence 345567899999999532 22110 00 012344667788888887754321 11 222
Q ss_pred eeeccEEEE-eCCeEEEee
Q 009550 240 YFDGCSCVV-VNGDMIAQG 257 (532)
Q Consensus 240 ~f~G~S~I~-p~G~ila~~ 257 (532)
.| -.++++ |+|+++..-
T Consensus 104 ~y-Ns~~vi~~~G~i~~~y 121 (297)
T cd07564 104 LY-NTQLLIDPDGELLGKH 121 (297)
T ss_pred eE-EEEEEEcCCCCEeeee
Confidence 33 345556 899987653
No 192
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=20.48 E-value=5.1e+02 Score=30.27 Aligned_cols=88 Identities=19% Similarity=0.254 Sum_probs=57.5
Q ss_pred HHHHHHHHhC-------CCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhc
Q 009550 338 WLWDYLRRSG-------ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAK 410 (532)
Q Consensus 338 ~L~~~l~~~~-------~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (532)
-+..|.++.+ ...+++.+||+..|.-+ +.+-++++ +. +..
T Consensus 231 ~~~~~~~~~~~~~~~~~~e~ilvcI~~~~~~e~l---iR~a~RlA-~~--------------~~a--------------- 277 (890)
T COG2205 231 QLRAYRRHKGIEGVWAARERILVCISGSPGSEKL---IRRAARLA-SR--------------LHA--------------- 277 (890)
T ss_pred HHHHHhhcccccccccccceEEEEECCCCchHHH---HHHHHHHH-HH--------------hCC---------------
Confidence 4555555543 25799999999999764 43323322 11 222
Q ss_pred ceEEEEecCCCCC---C---HHhHHHHHHHHHHhCCceEEEecHHHHHHHHHHhH
Q 009550 411 RIFYTVFMGSENS---S---QETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQ 459 (532)
Q Consensus 411 ~~~~~~~~~~~~s---~---~~~~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~ 459 (532)
..++||.-.+.. + ......+.+||++||.+..++.=+++.+++.+.-+
T Consensus 278 -~~~av~v~~~~~~~~~~~~~~~l~~~~~Lae~lGae~~~l~~~dv~~~i~~ya~ 331 (890)
T COG2205 278 -KWTAVYVETPELHRLSEKEARRLHENLRLAEELGAEIVTLYGGDVAKAIARYAR 331 (890)
T ss_pred -CeEEEEEeccccccccHHHHHHHHHHHHHHHHhCCeEEEEeCCcHHHHHHHHHH
Confidence 267777655432 2 33445688899999999999988888888876544
No 193
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=20.29 E-value=5e+02 Score=27.41 Aligned_cols=64 Identities=16% Similarity=0.047 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHCCCeE-EEcCCCCcCCCCCCcccccchhhhHHHHHHHHHHhcccCC--CeEEE
Q 009550 19 DCNLKNIKESIGRAKEAGAVI-RLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTD--GILCS 84 (532)
Q Consensus 19 ~~N~~~i~~~i~~A~~~gadL-vVfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~--~i~ii 84 (532)
+..++.+++.|+.|++-|++. +++|-..-..|.. ........+...+.|.++++.+++. ++.+.
T Consensus 111 ~~ai~~~kraId~A~eLGa~~v~v~~G~~g~~~~~--~~d~~~a~~~~~e~L~~lae~A~~~G~GV~la 177 (382)
T TIGR02631 111 RYALRKVLRNMDLGAELGAETYVVWGGREGAEYDG--AKDVRAALDRMREALNLLAAYAEDQGYGLRFA 177 (382)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEccCCCCCcCcc--ccCHHHHHHHHHHHHHHHHHHHHhhCCCcEEE
Confidence 456777888899999999974 4555322111111 0011223344556677777665554 45443
No 194
>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production []. They all have distinct substrate specificity and include cyanide hydratases, aliphatic amidases, beta-alanine synthase, and a few other proteins with unknown molecular function. Sequence conservation over the entire length, as well as the similarity in the reactions catalyzed by the known enzymes in this family, points to a common catalytic mechanism. They have an invariant cysteine that is part of the catalytic site in nitrilases. Another highly conserved motif includes an invariant glutamic acid that might also be involved in catalysis [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0006807 nitrogen compound metabolic process; PDB: 2E2L_D 2E2K_D 2DYV_A 2DYU_B 3KLC_B 3IW3_A 3KI8_A 3IVZ_A 1EMS_A 2GGK_B ....
Probab=20.26 E-value=2.9e+02 Score=25.04 Aligned_cols=67 Identities=9% Similarity=0.117 Sum_probs=38.3
Q ss_pred HHHHhCCCeEEEEcCCC--Ccc------ccch----------HHHHHHHHHHHHHcCcEEEEEcCcCCCCCceeeeccEE
Q 009550 185 ADLALNGVEVFMNASGS--HHQ------LRKL----------DYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSC 246 (532)
Q Consensus 185 ~~la~~GadlIl~psas--~~~------~g~~----------~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~f~G~S~ 246 (532)
+..+.+|+|+|+.|-.+ ++. .... ......+...|.+++++++.--..- + ++..| -.++
T Consensus 28 ~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~i~~G~~~~-~-~~~~~-N~~~ 104 (186)
T PF00795_consen 28 EEAARQGADLVVFPEMALPGYPNPGWCEDDFADLDEFAEPLDGPYLERLAELAKENGITIVAGIPER-D-DGGLY-NSAV 104 (186)
T ss_dssp HHHHHTTESEEEEETTTTTCS-GGGSGHSSHHHHHHHHBHSTSHHHHHHHHHHHHHTSEEEEEEEEE-E-TTEEE-EEEE
T ss_pred HHHHHCCCCEEEcCcchhcccccccccccccchhhhhccccccHHHHHHHHHHHhcCCccccccccc-c-ccccc-ceeE
Confidence 45566799999999442 220 0000 1234567788889999887652211 2 22234 3344
Q ss_pred EE-eCCeEE
Q 009550 247 VV-VNGDMI 254 (532)
Q Consensus 247 I~-p~G~il 254 (532)
++ |+|+++
T Consensus 105 ~~~~~g~~~ 113 (186)
T PF00795_consen 105 VIDPDGEIL 113 (186)
T ss_dssp EEETTSEEE
T ss_pred EEEeeeccc
Confidence 44 899887
Done!