Query 009550
Match_columns 532
No_of_seqs 377 out of 2860
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 07:42:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009550.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009550hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ilv_A Glutamine-dependent NAD 100.0 2.9E-92 1E-96 780.7 46.5 469 1-532 3-476 (634)
2 4f4h_A Glutamine dependent NAD 100.0 2E-91 6.7E-96 763.4 45.6 407 3-532 6-430 (565)
3 3sdb_A Glutamine-dependent NAD 100.0 1.4E-83 4.7E-88 714.7 45.9 470 2-532 11-499 (680)
4 3n05_A NH(3)-dependent NAD(+) 100.0 2.3E-77 8E-82 658.4 41.9 433 1-532 1-450 (590)
5 3p8k_A Hydrolase, carbon-nitro 100.0 4.7E-47 1.6E-51 380.9 27.2 252 1-289 18-274 (281)
6 3ivz_A Nitrilase; alpha-beta s 100.0 1.2E-46 4.1E-51 374.2 23.0 247 4-289 2-254 (262)
7 3hkx_A Amidase; alpha-beta-BET 100.0 4.7E-47 1.6E-51 381.4 19.0 251 2-289 19-273 (283)
8 2e11_A Hydrolase; dimethylarse 100.0 7.3E-46 2.5E-50 369.3 23.2 250 1-289 1-258 (266)
9 2w1v_A Nitrilase-2, nitrilase 100.0 1.2E-45 4.3E-50 369.6 24.0 254 1-289 1-263 (276)
10 1uf5_A N-carbamyl-D-amino acid 100.0 2.6E-44 9E-49 364.6 21.6 258 2-289 2-291 (303)
11 1f89_A 32.5 kDa protein YLR351 100.0 4E-44 1.4E-48 361.4 22.2 252 3-288 10-278 (291)
12 2vhh_A CG3027-PA; hydrolase; 2 100.0 8.9E-43 3E-47 366.4 23.2 256 2-289 71-360 (405)
13 2uxy_A Aliphatic amidase; nitr 100.0 5.1E-42 1.7E-46 353.3 20.2 243 2-284 11-270 (341)
14 2dyu_A Formamidase; AMIF, CEK, 100.0 1E-41 3.4E-46 350.3 20.9 247 3-286 13-272 (334)
15 1ems_A Nitfhit, NIT-fragIle hi 100.0 1.5E-41 5.3E-46 361.9 20.5 255 1-289 12-279 (440)
16 3q4g_A NH(3)-dependent NAD(+) 100.0 2.4E-32 8.3E-37 271.1 16.0 164 325-532 18-186 (279)
17 3dpi_A NAD+ synthetase; ssgcid 100.0 1.6E-30 5.4E-35 258.1 13.8 162 325-532 24-186 (285)
18 1wxi_A NH(3)-dependent NAD(+) 100.0 1.9E-28 6.6E-33 243.8 15.9 159 325-532 17-177 (275)
19 1kqp_A NAD+ synthase, NH(3)-de 100.0 8.5E-28 2.9E-32 239.1 15.6 158 325-532 16-174 (271)
20 3fiu_A NH(3)-dependent NAD(+) 99.9 2.3E-27 7.9E-32 232.8 14.7 151 328-532 9-159 (249)
21 3p52_A NH(3)-dependent NAD(+) 99.9 8.9E-27 3E-31 228.5 13.1 145 328-532 6-150 (249)
22 1xng_A NH(3)-dependent NAD(+) 99.9 9.7E-24 3.3E-28 209.8 14.5 144 329-532 6-149 (268)
23 2e18_A NH(3)-dependent NAD(+) 99.9 2.7E-22 9.3E-27 198.2 13.3 140 329-532 7-146 (257)
24 2vxo_A GMP synthase [glutamine 99.2 7.3E-12 2.5E-16 138.9 7.5 150 328-520 223-375 (697)
25 1gpm_A GMP synthetase, XMP ami 98.9 3.7E-09 1.3E-13 114.3 11.3 83 329-451 211-294 (525)
26 2dpl_A GMP synthetase, GMP syn 98.8 1.7E-08 5.9E-13 101.6 12.0 123 329-515 4-128 (308)
27 2hma_A Probable tRNA (5-methyl 98.7 2.7E-08 9.3E-13 102.9 9.5 72 342-451 3-82 (376)
28 2pg3_A Queuosine biosynthesis 98.7 6.4E-08 2.2E-12 93.4 10.3 65 347-449 1-66 (232)
29 3bl5_A Queuosine biosynthesis 98.7 2.5E-08 8.7E-13 95.0 6.6 63 349-449 4-66 (219)
30 2ywb_A GMP synthase [glutamine 98.6 1.9E-07 6.5E-12 100.4 13.4 82 329-451 193-274 (503)
31 3uow_A GMP synthetase; structu 98.5 3E-07 1E-11 99.8 11.8 75 341-452 247-324 (556)
32 2der_A TRNA-specific 2-thiouri 98.5 3.1E-07 1.1E-11 95.0 10.2 66 348-451 17-90 (380)
33 1q15_A CARA; CMPR, (2S,5S)-5-c 98.5 3.4E-07 1.2E-11 98.3 9.6 136 329-529 217-357 (503)
34 3tqi_A GMP synthase [glutamine 98.4 2.4E-07 8.1E-12 100.1 7.2 82 330-451 215-297 (527)
35 1jgt_A Beta-lactam synthetase; 98.4 1.1E-06 3.8E-11 94.5 12.0 135 328-526 219-358 (513)
36 1kor_A Argininosuccinate synth 98.4 1.1E-06 3.7E-11 91.4 10.5 64 349-451 1-65 (400)
37 2c5s_A THII, probable thiamine 98.4 1.4E-06 4.8E-11 91.2 11.1 67 349-453 188-260 (413)
38 3k32_A Uncharacterized protein 98.3 1.8E-06 6E-11 81.5 10.1 64 347-450 5-68 (203)
39 1vl2_A Argininosuccinate synth 98.3 1.4E-06 4.7E-11 90.5 8.1 63 349-451 15-78 (421)
40 1ct9_A Asparagine synthetase B 98.3 4.5E-06 1.5E-10 90.6 12.4 92 329-449 209-301 (553)
41 2nz2_A Argininosuccinate synth 98.1 8E-06 2.7E-10 85.1 10.2 63 349-451 6-69 (413)
42 1wy5_A TILS, hypothetical UPF0 98.0 1.9E-05 6.5E-10 79.7 11.2 68 348-449 24-94 (317)
43 1sur_A PAPS reductase; assimil 98.0 1.5E-05 5.1E-10 75.7 9.2 72 339-449 36-107 (215)
44 1k92_A Argininosuccinate synth 98.0 7.8E-06 2.7E-10 85.7 6.8 66 349-452 11-77 (455)
45 3a2k_A TRNA(Ile)-lysidine synt 97.8 9.4E-05 3.2E-09 78.5 12.2 76 340-449 6-88 (464)
46 3rjz_A N-type ATP pyrophosphat 97.7 3.3E-05 1.1E-09 74.2 6.4 75 348-460 4-88 (237)
47 2o8v_A Phosphoadenosine phosph 97.6 0.00019 6.4E-09 69.9 9.4 63 349-449 46-108 (252)
48 1ni5_A Putative cell cycle pro 97.5 0.0002 6.7E-09 75.4 9.0 77 338-449 5-83 (433)
49 1vbk_A Hypothetical protein PH 97.4 0.00031 1.1E-08 70.3 8.2 61 349-451 180-248 (307)
50 2wsi_A FAD synthetase; transfe 97.1 0.0011 3.7E-08 66.3 8.0 94 339-448 42-137 (306)
51 1zun_A Sulfate adenylyltransfe 97.0 0.0017 5.8E-08 65.5 9.3 77 337-449 37-113 (325)
52 2oq2_A Phosphoadenosine phosph 97.0 0.0016 5.6E-08 63.5 8.6 74 338-448 33-110 (261)
53 2goy_A Adenosine phosphosulfat 96.5 0.0077 2.6E-07 59.1 9.1 71 339-449 46-116 (275)
54 3fwk_A FMN adenylyltransferase 94.5 0.081 2.8E-06 52.4 7.8 94 338-447 46-141 (308)
55 1k77_A EC1530, hypothetical pr 65.7 27 0.00092 32.4 9.5 63 18-85 80-142 (260)
56 3ngf_A AP endonuclease, family 65.3 24 0.00081 33.2 9.1 63 17-85 87-149 (269)
57 3tva_A Xylose isomerase domain 62.9 17 0.00059 34.5 7.6 62 17-85 96-157 (290)
58 3obe_A Sugar phosphate isomera 61.7 21 0.00071 34.6 8.1 74 4-85 90-168 (305)
59 3dx5_A Uncharacterized protein 60.5 20 0.00068 33.9 7.6 77 4-85 62-141 (286)
60 3qc0_A Sugar isomerase; TIM ba 52.1 13 0.00046 34.8 4.7 63 19-85 79-141 (275)
61 3cqj_A L-ribulose-5-phosphate 50.1 21 0.00073 34.0 5.9 61 19-85 104-165 (295)
62 1i60_A IOLI protein; beta barr 49.5 25 0.00087 32.8 6.2 62 19-85 80-141 (278)
63 3kws_A Putative sugar isomeras 46.9 34 0.0012 32.4 6.7 63 19-85 100-164 (287)
64 2hk0_A D-psicose 3-epimerase; 43.0 55 0.0019 31.3 7.6 67 19-85 103-169 (309)
65 3l23_A Sugar phosphate isomera 42.8 66 0.0023 30.8 8.2 57 18-82 103-159 (303)
66 3p8k_A Hydrolase, carbon-nitro 40.7 41 0.0014 32.2 6.2 69 186-256 48-127 (281)
67 3ayv_A Putative uncharacterize 38.5 32 0.0011 31.9 4.9 63 19-85 72-135 (254)
68 3bdk_A D-mannonate dehydratase 38.3 87 0.003 31.6 8.4 42 4-45 78-126 (386)
69 2q02_A Putative cytoplasmic pr 36.7 78 0.0027 29.3 7.4 57 19-85 81-138 (272)
70 3u0h_A Xylose isomerase domain 34.1 49 0.0017 30.9 5.5 61 19-85 80-140 (281)
71 2vhh_A CG3027-PA; hydrolase; 2 31.9 86 0.0029 31.8 7.2 71 185-256 106-194 (405)
72 3ivz_A Nitrilase; alpha-beta s 31.9 85 0.0029 29.3 6.8 68 185-256 28-110 (262)
73 3hkx_A Amidase; alpha-beta-BET 31.1 85 0.0029 29.8 6.7 70 185-256 47-128 (283)
74 2w1v_A Nitrilase-2, nitrilase 29.8 68 0.0023 30.3 5.7 69 186-256 30-109 (276)
75 3cny_A Inositol catabolism pro 29.6 94 0.0032 29.2 6.8 67 19-85 86-159 (301)
76 1tz9_A Mannonate dehydratase; 27.7 1.7E+02 0.0059 28.7 8.6 39 4-42 69-114 (367)
77 2zvr_A Uncharacterized protein 25.9 1.8E+02 0.0061 27.2 8.0 55 19-78 109-163 (290)
78 3vni_A Xylose isomerase domain 25.0 1.3E+02 0.0046 28.1 6.9 64 19-84 84-149 (294)
79 1xla_A D-xylose isomerase; iso 24.4 98 0.0033 31.0 6.0 63 19-85 112-179 (394)
80 2dyu_A Formamidase; AMIF, CEK, 24.0 1.4E+02 0.0048 29.1 7.0 66 190-256 51-130 (334)
81 1uf3_A Hypothetical protein TT 23.7 54 0.0018 29.3 3.6 72 1-89 1-74 (228)
82 2zds_A Putative DNA-binding pr 23.5 90 0.0031 30.0 5.4 62 19-84 107-177 (340)
83 1ems_A Nitfhit, NIT-fragIle hi 21.1 2.2E+02 0.0077 28.7 8.1 72 185-257 40-125 (440)
84 1fs5_A Glucosamine-6-phosphate 21.0 70 0.0024 30.2 3.8 34 326-359 7-43 (266)
85 1uf5_A N-carbamyl-D-amino acid 20.6 73 0.0025 30.4 4.0 70 186-256 33-123 (303)
No 1
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406}
Probab=100.00 E-value=2.9e-92 Score=780.72 Aligned_cols=469 Identities=29% Similarity=0.433 Sum_probs=398.8
Q ss_pred CCceEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhhHHHHHHHHHHhcccCCC
Q 009550 1 MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDG 80 (532)
Q Consensus 1 m~~~rVAlvQ~~~~~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~ 80 (532)
|+.||||++|+++.++|+++|++++.+++++|+++|||||||||+++|||+++|++..+++...+.+.|.++++.+ .+
T Consensus 3 M~~~rVA~~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGY~~~dl~~~~~~~~~~~~~l~~la~~~--~~ 80 (634)
T 3ilv_A 3 LSTIRIGGAAVNQTPIDWENNVKNILDAIEEAKNANVEILCLPELCITGYGCEDLFLTDWVAETAIEYCFEIAASC--TD 80 (634)
T ss_dssp -CEEEEEEEEECCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCSCCGGGGGSHHHHHHHHHHHHHHHTTC--TT
T ss_pred CCCeEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEcCCCccccCChHHHhhChhhhHHHHHHHHHHHHhC--CC
Confidence 6789999999999999999999999999999999999999999999999999999887778777888888888752 38
Q ss_pred eEEEEceeeeeCCeeeEEEEEEeCCEEEEEEecccCCCCCCcccccceeecCCCCcccccccchhhhhhccCceecccce
Q 009550 81 ILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYG 160 (532)
Q Consensus 81 i~iivG~~~~~~~~lyNsa~vi~~G~il~~y~K~~L~~~g~f~E~~~f~~G~~~~~~~~~~lp~~~~~~~~~~~~p~g~~ 160 (532)
+++++|+|++.++++|||+++|.+|++++.|+|+|||+|++|+|++||+||+... ...+ ..++..+|||+.
T Consensus 81 i~ivvG~p~~~~~~lyNsa~vi~~G~il~~y~K~hL~~~~~f~E~r~f~pG~~~~-~~~~--------~~~g~~~p~g~~ 151 (634)
T 3ilv_A 81 ITVSLGLPMRIAGITYNCVCLVENGIVKGFSAKQFLANEGVHYETRWFTAWPRNH-TTTF--------LYNDVKYPFGDV 151 (634)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEETTEEEEEEECSSCCCSTTCCGGGTCCCCCTTC-EEEE--------EETTEEEEEESC
T ss_pred CEEEEeeeEeeCCCccEEEEEEECCeEEEEEcCEeCCCCCCcChhhhcCCCCccc-ccee--------cccCcccccCCe
Confidence 9999999999999999999999999999999999999999999999999998642 1111 124667899988
Q ss_pred eEEeCCceEEEEeeccCCCCChHHHHHHhCCCeEEEEcCCCCccccchHHHHHHHHHHHHHcCcEEEEEcCcCCCCCcee
Q 009550 161 FIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLY 240 (532)
Q Consensus 161 vf~~~~~riGv~IC~D~~~pe~~~~~la~~GadlIl~psas~~~~g~~~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~ 240 (532)
+|+++++|||++||||+|||+.+.+.++++|||+|++||+||+..|+..+|..++++||+||+++||+||++|.++++++
T Consensus 152 vf~~~g~~iG~~IC~D~~fPe~~~r~la~~GAdii~~psas~~~~gk~~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~ 231 (634)
T 3ilv_A 152 LYNVKDARIGFEICEDAWRTDRVGIRHYEKGATLVLNPSASHFAFGKSAIRYDLVIGGSERFDCTYVYANLLGNEAGRMI 231 (634)
T ss_dssp CEEETTEEEEECCTTC----------CGGGTCSEEEEEECCBCCTTHHHHHHHHHHHHHHHTTSEEEEEECEEESSSSCE
T ss_pred EEEECCEEEEEEEeccccCChHHHHHHHHCCCcEEEEecCCccccCcHHHHHHHHHHHHHHhCCEEEEEcCccCCCCceE
Confidence 99999999999999999999767889999999999999999999998888999999999999999999999998877899
Q ss_pred eeccEEEEeCCeEEEeeCCCCCCceeEEEEEeechhhhhhhccCCchhhhhcccCCCCeEEeeccccCCCcccCCCCCcc
Q 009550 241 FDGCSCVVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASCKTKIPSVAVPYNLCQPFNLKMSLSSPL 320 (532)
Q Consensus 241 f~G~S~I~p~G~ila~~~~f~e~~~~iv~a~iDl~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (532)
|+|+|+|.|+|+++++++.|+++++++++++||++.++..|.+.+
T Consensus 232 f~G~S~I~p~G~vla~~~~f~~~~~~vi~a~iDl~~~~~~R~~~~----------------------------------- 276 (634)
T 3ilv_A 232 YDGEVLIAHKGKLIQRNDRLSFKNVNLIYADIATDSAETPETVLT----------------------------------- 276 (634)
T ss_dssp EECCEEEEETTEEEEECCSSCSSSEEEEEEEEEC----------------------------------------------
T ss_pred EcceEEEEcCCeEEEECCCCCCCCceEEEEEEEhHHhHHHHhcCC-----------------------------------
Confidence 999999999999999999998655789999999998776554210
Q ss_pred ccCCCCcHHHHhcchhhHHHHHHHHhCCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHH-----hcc
Q 009550 321 KINYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIR-----IGH 395 (532)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~ 395 (532)
..+++|.||++.++++||||||+++|.++++||||||+|||++|+|++.||+++++++ |.++|..++.+ +..
T Consensus 277 -~~~~~~~~~~~~~~~~~l~d~~~~~g~~~vvlglSGGvDSsv~A~Lv~~~~~~a~~al--G~~~v~~~~~~~~~~~~~~ 353 (634)
T 3ilv_A 277 -QDDLEKEFEFWEATSLGLFDYMRKSRSKGFVLSLSGGADSSACAIMVAEMIRKGLKEL--GLTAFLQKSNMETLFDLPA 353 (634)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHTTCCSEEEECCSSHHHHHHHHHHHHHHHHHHHHH--CHHHHHHHHTCGGGCCSSC
T ss_pred -CCCCCcHHHHHHHHHHHHHHHHHHhCCCeEEEEccCCHHHHHHHHHHHHHHHHHHHHh--Cchhhhhhhhccccccccc
Confidence 1145778999999999999999999999999999999999999999999999999997 56777766531 221
Q ss_pred CCCCCCCCChHHhhcceEEEEecCCCCCCHHhHHHHHHHHHHhCCceEEEecHHHHHHHHHHhHhhhCCCCCcccCCCcc
Q 009550 396 YANGEFPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSN 475 (532)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (532)
......|.++++||+..++||+||+.+|++.+.++|+++|+.||++|++|||+++++++.+.+...+|++|.|.
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~v~m~~~~ss~~~~~dA~~la~~LGi~~~~IdI~~~~~~~~~~~~~~~g~~p~~~------ 427 (634)
T 3ilv_A 354 LQHLPFEEQAKKITAVFLTTAYQSTRNSGDETYTSAKTLAESIGATFYNWSVDEEIEQYKATIENVIERPLTWE------ 427 (634)
T ss_dssp SSCTTSHHHHHHHHHHHEEEEEEECTTCCSHHHHHHHHHHHHHTCEEEEEECHHHHHHHHHHHHHHTTSCCCTT------
T ss_pred ccccccccchhHhhhheeeeeecCCCCCCHHHHHHHHHHHHHhCCcEEEEccHHHHHHHHHHHHHhhCCCcccc------
Confidence 11112345578999999999999999999999999999999999999999999999999999998888877543
Q ss_pred ccccchhhhhhhhhHHHHHHHhhcCccccCCCCcEEEEcCCCccccccccccccCCC
Q 009550 476 VENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKVFDL 532 (532)
Q Consensus 476 ~~~~~~~N~qaR~R~~~l~~~a~~~~~~~~~~~~~lvlgT~n~sE~~~Gy~T~ygd~ 532 (532)
..+++++|+|||+||.++|.+||.. | ++|+||||+||.++||+|+|||.
T Consensus 428 ~~~~~~~N~qaR~R~~~l~~~A~~~-------g-~lvlgTgnksE~~~Gy~T~ygD~ 476 (634)
T 3ilv_A 428 KDDITLQNIQARGRAPIIWMLTNVK-------Q-ALLITTSNRSEGDVGYATMDGDT 476 (634)
T ss_dssp TCHHHHHHHHHHTTHHHHHHHHHHH-------T-CEEBCCCCHHHHHTTCSCTTTTT
T ss_pred cCcchhhhhhHHHHHHHHHHHHHhc-------C-CEEeccCchhhHhhCCccccCCc
Confidence 4789999999999999999888765 6 49999999999999999999995
No 2
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}
Probab=100.00 E-value=2e-91 Score=763.36 Aligned_cols=407 Identities=25% Similarity=0.302 Sum_probs=364.1
Q ss_pred ceEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhhHHHHHHHHHHhccc-CCCe
Q 009550 3 LLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDW-TDGI 81 (532)
Q Consensus 3 ~~rVAlvQ~~~~~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~-~~~i 81 (532)
+||||++|+|+++||+++|+++|++++++|+++||||||||||++|||+++|++.++++.+.+.+.+.+|++.++ ..++
T Consensus 6 kmKIAlaQln~~vGD~~~N~~~i~~~i~~Aa~~GAdLvvfPEL~ltGY~~~Dl~~~~~~~~~~~~~l~~la~~~~~~~~i 85 (565)
T 4f4h_A 6 KTRIALAQLNVTVGDFAGNVAKIVAAAQAAHDAGAHFLIAPELALSGYPPEDLLLRPAFYAASDAALAELAAQLKPFAGL 85 (565)
T ss_dssp CEEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCSCCGGGGGCHHHHHHHHHHHHHHHHHHTTSTTC
T ss_pred ceEEEEEECCCCcccHHHHHHHHHHHHHHHHHCCCcEEECCCCcccCCChHHhhhCHHHHHHHHHHHHHHHHHhhhcCCc
Confidence 499999999999999999999999999999999999999999999999999999999999999999999987654 4589
Q ss_pred EEEEceeeeeC----------------CeeeEEEEEEeCCEEEEEEecccCCCCCCcccccceeecCCCCcccccccchh
Q 009550 82 LCSFGMPVIKG----------------SERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNE 145 (532)
Q Consensus 82 ~iivG~~~~~~----------------~~lyNsa~vi~~G~il~~y~K~~L~~~g~f~E~~~f~~G~~~~~~~~~~lp~~ 145 (532)
++++|+|++.+ +++|||++++.+|+++++|+|+|||+|++|+|++||+||+...
T Consensus 86 ~ivvG~p~~~~~~~~~~~~~~~~~~~~~~lyNsa~vi~~G~i~~~y~K~hLp~~~~f~E~r~f~~G~~~~---------- 155 (565)
T 4f4h_A 86 AVLVGHPLRAPSADGNANRAIERGVPPVDTYNAASLIVGGEVAGTYRKQDLPNTEVFDEKRYFATDAAPY---------- 155 (565)
T ss_dssp EEEEEEEEECC-----CCCCCCTTSCCCSEEEEEEEEETTEEEEEEECCSCCCSTTCCGGGTCCCCCCCC----------
T ss_pred EEEEeeeeeecccccccccceecccCCCceEEEEEEEECCEEEEEEeeeecCCCcccceeccccCCCcce----------
Confidence 99999998643 3589999999999999999999999999999999999998652
Q ss_pred hhhhccCceecccceeEEeCCceEEEEeeccCCCCChHHHHHHhCCCeEEEEcCCCCccccchHHHHHHHHHHHHHcCcE
Q 009550 146 ISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGV 225 (532)
Q Consensus 146 ~~~~~~~~~~p~g~~vf~~~~~riGv~IC~D~~~pe~~~~~la~~GadlIl~psas~~~~g~~~~~~~l~~~rA~e~~~~ 225 (532)
+|+++++|||+.||||+|||+ +.+.++++|||+|++|++||+..||..+|..++++||.+++++
T Consensus 156 ---------------v~~~~g~~iGv~IC~Dlwfpe-~~r~la~~GA~ii~~psAs~~~~gk~~~r~~ll~arA~e~~~~ 219 (565)
T 4f4h_A 156 ---------------VFELNGVKFGVVICEDVWHAS-AAQLAKAAGAQVLIVPNGSPYHMNKDAVRIDILRARIRETGLP 219 (565)
T ss_dssp ---------------EEEETTEEEEECCGGGGGSSH-HHHHHHHTTCSEEEEEECCBCCTTHHHHHHHHHHHHHHHHCCC
T ss_pred ---------------eEEecCcEEEEEEeehhcccc-hhHHHHhCCCeeeecccccccccCcHHHHHHHHHHHHHHhCCc
Confidence 899999999999999999996 7789999999999999999999999999999999999999999
Q ss_pred EEEEcCcCCCCCceeeeccEEEE-eCCeEEEeeCCCCCCceeEEEEEeechhhhhhhccCCchhhhhcccCCCCeEEeec
Q 009550 226 YMYSNHQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASCKTKIPSVAVPY 304 (532)
Q Consensus 226 vv~aN~~G~~~~~~~f~G~S~I~-p~G~ila~~~~f~e~~~~iv~a~iDl~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~ 304 (532)
|+|+|++|.+ ++.+|+|+|+|+ |+|+++++++.|+| +++++++|..... + .
T Consensus 220 vvy~N~vG~~-~~~~f~G~S~iidp~G~vla~~~~f~e---~~~~~d~d~~~~~------~------------------~ 271 (565)
T 4f4h_A 220 MVYVNLVGGQ-DELVFDGGSFVLDGAGELVAKMPQFEE---GNAIVEFDGARAL------P------------------A 271 (565)
T ss_dssp EEEEECEEEE-TTEEEEBCCEEECTTSCEEEECCBSCC---EEEEEEEETTEEC------C------------------C
T ss_pred EEEeeeecCC-CCeEEECCcceecCCCcEEEEcccccc---ceEEEEecccccc------c------------------c
Confidence 9999999998 889999999999 99999999999975 5777777743110 0 0
Q ss_pred cccCCCcccCCCCCccccCCCCcHHHHhcchhhHHHHHHHHhCCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCch
Q 009550 305 NLCQPFNLKMSLSSPLKINYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDE 384 (532)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~ 384 (532)
. . ....++.+|+++++++|||||++|+|+++++||||||+|||++|+|+ ++|
T Consensus 272 ~--------------~-~~~~~~~~~~~~a~~~gl~dy~~k~g~~~~vlglSGGiDSal~~~la-------~~a------ 323 (565)
T 4f4h_A 272 A--------------I-APALSVEAQVYRALVLGVRDYIGKNGFPGAIIGLSGGVDSALVLAVA-------VDA------ 323 (565)
T ss_dssp C--------------B-CCCCCHHHHHHHHHHHHHHHHHHHTTCCCEEEECCSSHHHHHHHHHH-------HHH------
T ss_pred c--------------c-ccCcchHHHHHHHHHHHHHHHHHHcCCCcEEEecCCCccHHHHHHHH-------HHH------
Confidence 0 0 11235668999999999999999999999999999999999999998 577
Q ss_pred hHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHHhHHHHHHHHHHhCCceEEEecHHHHHHHHHHhHhhhCC
Q 009550 385 QVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGK 464 (532)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~~~~~~ 464 (532)
++.+ +|++++||+++||+.|.++|++||+.||++|++|+|+++++++...+...++.
T Consensus 324 --------lg~~---------------~v~~v~mp~~~ts~~t~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~~~~~~ 380 (565)
T 4f4h_A 324 --------LGAE---------------RVRAVMMPSRYTAGISTTDAADMARRVGVRYDEIAIAPMFDAFRASLAAEFAG 380 (565)
T ss_dssp --------HCGG---------------GEEEEECCCTTCCHHHHHHHHHHHHHHTCEEEECCCHHHHHHHHHHHTTTTTT
T ss_pred --------hCCc---------------cEEEEeccccccccchHHHHHHHHHHhCCceeeeecchHHHHHHHHhhhcccC
Confidence 5544 69999999999999999999999999999999999999999998877654332
Q ss_pred CCCcccCCCccccccchhhhhhhhhHHHHHHHhhcCccccCCCCcEEEEcCCCccccccccccccCCC
Q 009550 465 RPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKVFDL 532 (532)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~N~qaR~R~~~l~~~a~~~~~~~~~~~~~lvlgT~n~sE~~~Gy~T~ygd~ 532 (532)
..+|+++||+|||+||++||.+||.. |+ |||||||+||.++||||||||.
T Consensus 381 ----------~~~d~~~eN~qaR~R~~~l~~~an~~-------g~-lvlgTgn~sE~a~Gy~T~~Gd~ 430 (565)
T 4f4h_A 381 ----------LAEDATEENIQARIRGTLLMALSNKF-------GS-IVLTTGNKSEMAVGYCTLYGDM 430 (565)
T ss_dssp ----------CCCCHHHHHHHHHHHHHHHHHHHHHH-------CC-EEEECCCHHHHHHTCSCTTTTT
T ss_pred ----------ccchhhHhhhcchhhHHHHHHHHhhc-------CC-cccCCCchhhHhhccccccCCc
Confidence 24799999999999999999777655 75 9999999999999999999995
No 3
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A*
Probab=100.00 E-value=1.4e-83 Score=714.66 Aligned_cols=470 Identities=22% Similarity=0.280 Sum_probs=383.0
Q ss_pred CceEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhhHHHHHHHHHHhcccCCCe
Q 009550 2 RLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGI 81 (532)
Q Consensus 2 ~~~rVAlvQ~~~~~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i 81 (532)
.+||||++|+++..+|++.|++++.+++++|+++|||||||||+++|||.+.|++.++++.+.+.+.++.|++.++++++
T Consensus 11 g~~rVAl~Q~~~~~~D~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGY~~~dl~~~~~~~~~~~~~l~~l~~~a~~~~i 90 (680)
T 3sdb_A 11 GFVRVAACTHHTTIGDPAANAASVLDMARACHDDGAALAVFPELTLSGYSIEDVLLQDSLLDAVEDALLDLVTESADLLP 90 (680)
T ss_dssp TEEEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCGGGGGGGGCHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred CCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCcccCCChHHHhhCHHHHHhhHHHHHHHHHHhhcCCc
Confidence 57999999999999999999999999999999999999999999999999999988888888788889999998888999
Q ss_pred EEEEceeeeeCCeeeEEEEEEeCCEEEEEEecccCCCCCCcccccceeecCCCCcccccccchhhhhhccCceecccc-e
Q 009550 82 LCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGY-G 160 (532)
Q Consensus 82 ~iivG~~~~~~~~lyNsa~vi~~G~il~~y~K~~L~~~g~f~E~~~f~~G~~~~~~~~~~lp~~~~~~~~~~~~p~g~-~ 160 (532)
++++|+|++.++++|||+++|++|++++.|+|+|||+|++|+|++||+||+.... .+ .+ .+..+|||+ .
T Consensus 91 ~ivvG~p~~~~~~lyNsa~vi~~G~il~~y~K~hL~~~~~f~E~r~F~~G~~~~~--~i-------~~-~g~~vpfg~~~ 160 (680)
T 3sdb_A 91 VLVVGAPLRHRHRIYNTAVVIHRGAVLGVVPKSYLPTYREFYERRQMAPGDGERG--TI-------RI-GGADVAFGTDL 160 (680)
T ss_dssp EEEEEEEEEETTEEEEEEEEEETTEEEEEEECSCCCEETTEEGGGTEECCTTCCS--EE-------EE-TTEEEEBSSCE
T ss_pred EEEEeceEEeCCCceEEEEEEeCCCEEEEEeeecCCCCCccChhhhcCCCCCCCc--ee-------ee-cCcccccCCce
Confidence 9999999999999999999999999999999999999999999999999986410 01 11 244788886 5
Q ss_pred eE---EeCCceEEEEeeccCCCCChHHHHHHhCCCeEEEEcCCCCccccchHHHHHHHHHHHHHcCcEEEEEcC-cCCCC
Q 009550 161 FI---QFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNH-QGCDG 236 (532)
Q Consensus 161 vf---~~~~~riGv~IC~D~~~pe~~~~~la~~GadlIl~psas~~~~g~~~~~~~l~~~rA~e~~~~vv~aN~-~G~~~ 236 (532)
+| +++++|||++||||+|||+.+++.++++|||+|++||+||+..|+..+|..+++.++++++++||++|+ .|.++
T Consensus 161 vf~~~~~~g~riGv~IC~Dl~fPe~~~r~la~~GAdiil~pSasp~~~gk~~~r~~l~~~~aar~~~~yV~a~~~~G~~~ 240 (680)
T 3sdb_A 161 LFAASDLPGFVLHVEIAEDMFVPMPPSAEAALAGATVLANLSGSPITIGRAEDRRLLARSASARCLAAYVYAAAGEGEST 240 (680)
T ss_dssp EEEETTCTTCEEEEEEGGGGGSSSCHHHHHHHHTCCEEEEECCCCCCTTHHHHHHHHHHHHHHHTTSEEEEECCCTTSCC
T ss_pred eEeeeccCCeEEEEEEeccccccccHHHHHHhcCCeEEEEecCCccccCcHHHHHHHHHHHHHHhCCcEEEEECCcccCC
Confidence 67 689999999999999999876689999999999999999999999888888999999999999999887 66666
Q ss_pred CceeeeccEEEEeCCeEEEeeCCCCCCceeEEEEEeechhhhhhhccCCchhhhhcc----cCCCCeEEeeccccCCCcc
Q 009550 237 GRLYFDGCSCVVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASC----KTKIPSVAVPYNLCQPFNL 312 (532)
Q Consensus 237 ~~~~f~G~S~I~p~G~ila~~~~f~e~~~~iv~a~iDl~~~~~~R~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 312 (532)
++++|+|+|+|+|+|+++++++.|+.+ +++++++||++.+++.|.++++|++.... ...+.. +++++..+...
T Consensus 241 ~~l~f~G~S~I~p~G~vla~~~~f~~~-e~ll~adiDl~~l~~~R~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 317 (680)
T 3sdb_A 241 TDLAWDGQTMIWENGALLAESERFPKG-VRRSVADVDTELLRSERLRMGTFDDNRRHHRELTESFRR--IDFALDPPAGD 317 (680)
T ss_dssp SSCCCCCCEEEEETTEEEEECCSSCSS-CEEEEEEEEHHHHHHHHHHCHHHHHHHHHTHHHHHTCEE--EEECCCCCCSC
T ss_pred CCeEEeccEEEEcCCEEEEECCCCCCC-CcEEEEEEcHHHHHHHHHhCCchhhhhhhhcccccccee--eeeeccCcccc
Confidence 789999999999999999999998442 57999999999999999988888654321 012333 33333311111
Q ss_pred cCCCCCccccCCCCcH---------HHHhcchhhHHHHHHHHhCCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCc
Q 009550 313 KMSLSSPLKINYHSPE---------EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGD 383 (532)
Q Consensus 313 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~L~~~l~~~~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~ 383 (532)
..+.+++++.||.|. ++++.+++.||+||++++|.++++||||||+|||++|+++. ++.++
T Consensus 318 -~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~vvvglSGGvDSsvaa~l~~----~a~~~----- 387 (680)
T 3sdb_A 318 -IGLLREVERFPFVPADPQRLQQDCYEAYNIQVSGLEQRLRALDYPKVVIGVSGGLDSTHALIVAT----HAMDR----- 387 (680)
T ss_dssp -CCCCSCCCSCTTSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTSCEEEEECCSSHHHHHHHHHHH----HHHHH-----
T ss_pred -ccccccccCCCCCCcchhhcchhHHHHHHHHHHHHHHHHHHcCCCcEEEEecCCccHHHHHHHHH----HHHHH-----
Confidence 135677778888774 47889999999999999999999999999999998666652 22333
Q ss_pred hhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHHhHHHHHHHHHHhCCceEEEecHHHHHHHHHHhHhhhC
Q 009550 384 EQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTG 463 (532)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~~~~~ 463 (532)
+|.. ++ +|++|+||+..+++.+.++|+++|+.||++|++|||+++++++...+...+.
T Consensus 388 ---------lg~~--------~~-----~v~~v~m~~~~~~~~~~~~A~~la~~lgi~~~~i~i~~~~~~~~~~l~~~~~ 445 (680)
T 3sdb_A 388 ---------EGRP--------RS-----DILAFALPGFATGEHTKNNAIKLARALGVTFSEIDIGDTARLMLHTIGHPYS 445 (680)
T ss_dssp ---------TTCC--------GG-----GEEEEECCC--------CHHHHHHHHHTCEEEECCCHHHHHHHHHHC-----
T ss_pred ---------hCCC--------Cc-----eEEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEECHHHHHHHHHHhchhhc
Confidence 4411 01 5999999999999999999999999999999999999999988876654321
Q ss_pred CCCCcccCCCccccccchhhhhhhhhHHHHHHHhhcCccccCCCCcEEEEcCCCcccccccccccc-CCC
Q 009550 464 KRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKV-FDL 532 (532)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~N~qaR~R~~~l~~~a~~~~~~~~~~~~~lvlgT~n~sE~~~Gy~T~y-gd~ 532 (532)
+|....+++++|+|||+||.+||.+|+.. | ++|+||||+||.++||+|+| ||.
T Consensus 446 --------~~~~~~~~~~~N~~ar~R~~~l~~~A~~~-------g-~lvlgTgn~sE~~~Gy~T~~~gD~ 499 (680)
T 3sdb_A 446 --------VGEKVYDVTFENVQAGLRTDYLFRIANQR-------G-GIVLGTGDLSELALGWSTYGVGDQ 499 (680)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHHH-------T-EEEEECCCHHHHHHTCSCCSSSTT
T ss_pred --------CCCCCcchhHHHhhHHHHHHHHHHHHHHc-------C-CEEEeCCcHHhHhcCeeeccCCCc
Confidence 13345799999999999999999877655 6 59999999999999999999 994
No 4
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}
Probab=100.00 E-value=2.3e-77 Score=658.44 Aligned_cols=433 Identities=25% Similarity=0.285 Sum_probs=361.8
Q ss_pred CC-ceEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhhHHHHHHHHHHhcc--c
Q 009550 1 MR-LLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGD--W 77 (532)
Q Consensus 1 m~-~~rVAlvQ~~~~~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~--~ 77 (532)
|. .||||++|+++.++|+++|++++.+++++|+++|||||||||+++|||++.|++..+++...+.+.|.+|++.+ .
T Consensus 1 M~~~~rvA~~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~dl~~~~~~~~~~~~~l~~la~~~~~~ 80 (590)
T 3n05_A 1 MSLQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSSFVEASRTALRELAARLAEE 80 (590)
T ss_dssp -CEEEEEEEEECCCCTTCHHHHHHHHHHHHHHHHTTTCSEEECCTTTTTCSCCGGGGGCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCccEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCcccccCCChHHHhhCHHHHHHHHHHHHHHHHhhhhc
Confidence 54 69999999999999999999999999999999999999999999999999999888888888888999999864 2
Q ss_pred C-CCeEEEEceeeeeC----------CeeeEEEEEEeCCEEEEEEecccCCCCCCcccccceeecCCCCcccccccchhh
Q 009550 78 T-DGILCSFGMPVIKG----------SERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEI 146 (532)
Q Consensus 78 ~-~~i~iivG~~~~~~----------~~lyNsa~vi~~G~il~~y~K~~L~~~g~f~E~~~f~~G~~~~~~~~~~lp~~~ 146 (532)
+ .++++++|++++.+ +++||++++|++|++++.|+|+|||+|++|+|++||+||+..
T Consensus 81 ~~~~i~ivvG~~~~~~~~~~~~~~~~~~lyNsa~vi~~G~i~~~y~K~~L~~~~~f~E~r~f~~G~~~------------ 148 (590)
T 3n05_A 81 GFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLHRGRVALTFAKHHLPNYGVFDEFRYFVPGDTM------------ 148 (590)
T ss_dssp TCTTSCEEEEEEEECSSCBTTTTBCTTCEEEEEEEEETTEEEEEEECCCCCSSSSCCHHHHCCCCCEE------------
T ss_pred cCCceEEEEeeEEEEcCcccccccccCCeeEEEEEEeCCEEEEEEeCccCCCCCccCccccccCCCcc------------
Confidence 2 35899999998853 379999999999999999999999999999999999999853
Q ss_pred hhhccCceecccceeEEeCCceEEEEeeccCCC-CChHHHHHHhCCCeEEEEcCCCCccccchHHHHHHHHHHHHHcCcE
Q 009550 147 SVALKQKSVPFGYGFIQFLDTAVAAEICEELFT-PIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGV 225 (532)
Q Consensus 147 ~~~~~~~~~p~g~~vf~~~~~riGv~IC~D~~~-pe~~~~~la~~GadlIl~psas~~~~g~~~~~~~l~~~rA~e~~~~ 225 (532)
.+|+++++|||++||||+|| |+ +.+.++.+|||+|++||+||+..++..+|..++++||.||+++
T Consensus 149 -------------~v~~~~g~~iG~~IC~D~~f~pe-~~~~la~~Ga~ii~~psa~p~~~gk~~~~~~l~~~rA~e~~~~ 214 (590)
T 3n05_A 149 -------------PIVRLHGVDIALAICEDLWQDGG-RVPAARSAGAGLLLSVNASPYERDKDDTRLELVRKRAQEAGCT 214 (590)
T ss_dssp -------------EEEEETTEEEEEEEGGGGGSTTS-HHHHHHHTTCSEEEEEECCBCCCCSSCHHHHHHHHHHHHHTSE
T ss_pred -------------eEEEECCEEEEEEeehhhccCCh-HHHHHHHcCCCEEEEecCCccccCcHHHHHHHHHHHHHHhCCE
Confidence 28999999999999999999 65 7889999999999999999999888888999999999999999
Q ss_pred EEEEcCcCCCCCceeeeccEEEE-eCCeEEEeeCCCCCCceeEEEEEeechhhhhhhccCCchhhhhcccCCCCeEEee-
Q 009550 226 YMYSNHQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASCKTKIPSVAVP- 303 (532)
Q Consensus 226 vv~aN~~G~~~~~~~f~G~S~I~-p~G~ila~~~~f~e~~~~iv~a~iDl~~~~~~R~~~~~~~~~~~~~~~~~~~~~~- 303 (532)
+++||++|.+ ++++|+|+|+|+ |+|+++++++.|++ ++++++||++.++..+.. ..++.. .....+.++
T Consensus 215 vv~an~~G~~-~~~~f~G~S~iidp~G~vla~~~~~~e---~~~~~didl~~~~~~~~~-~~~~~~----~~~~~~~~~~ 285 (590)
T 3n05_A 215 TAYLAMIGGQ-DELVFDGDSIVVDRDGEVVARAPQFSE---GCVVLDLDLPAAEAEPPT-GVVDDG----LRIDRLVISE 285 (590)
T ss_dssp EEEEECEEEE-TTEEEEBCCEEECTTSCEEEECCBTSC---EEEEEEEEECCCCSSCCC-SBCTTS----CEEEEEESCS
T ss_pred EEEEecccCC-CCeEEeCcEEEECCCCcEEEEcCCCCC---cEEEEEEccccccccccc-cccccc----ccccccccCC
Confidence 9999999988 789999999999 99999999998863 699999999876321100 000000 000000110
Q ss_pred ccccCCCcccCCCCCccccCCCCcHHHHhcchhhHHHHHHHHhCCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCc
Q 009550 304 YNLCQPFNLKMSLSSPLKINYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGD 383 (532)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~ 383 (532)
.+++... .++ ......++.+.++++.+++.||+||++++|.++++||||||+|||++|+|+ +++
T Consensus 286 ~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~vvvglSGGvDSsv~a~la-------~~a----- 349 (590)
T 3n05_A 286 EPLPAYE---AEL-AGGYADRLDADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIA-------CDA----- 349 (590)
T ss_dssp SCCCCCC---CCC-CCCBCCCCCHHHHHHHHHHHHHHHHHHTTTCCCEEEECCSSHHHHHHHHHH-------HHH-----
T ss_pred CCCCccc---ccc-cccccccCCcHHHHHHHHHHHHHHHHHHhCCCcEEEEcCCCHHHHHHHHHH-------HHH-----
Confidence 0000000 000 000011346678999999999999999999999999999999999999988 455
Q ss_pred hhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHHhHHHHHHHHHHhCCceEEEecHHHHHHHHHHhHhhhC
Q 009550 384 EQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTG 463 (532)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~~~~~ 463 (532)
+|.+ +|++++||+.++++.+.++|+++|+.||++|++|+|++.++++...+.
T Consensus 350 ---------lG~~---------------~v~~v~m~~~~~~~~~~~~A~~la~~lgi~~~~i~i~~~~~~~~~~l~---- 401 (590)
T 3n05_A 350 ---------LGAQ---------------NVYGVSMPSKYSSDHSKGDAAELARRTGLNFRTVSIEPMFDAYMASLG---- 401 (590)
T ss_dssp ---------HCGG---------------GEEEEECCCSSCCHHHHHHHHHHHHHHTCEEEECCSHHHHHHHHHHHC----
T ss_pred ---------hCcc---------------cEEEEEECCCCCCHHHHHHHHHHHHHcCCcEEEEEChHHHHHHHHHhc----
Confidence 4523 599999999999999999999999999999999999999887765544
Q ss_pred CCCCcccCCCccccccchhhhhhhhhHHHHHHHhhcCccccCCCCcEEEEcCCCccccccccccccCCC
Q 009550 464 KRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKVFDL 532 (532)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~N~qaR~R~~~l~~~a~~~~~~~~~~~~~lvlgT~n~sE~~~Gy~T~ygd~ 532 (532)
..+++.+|+|+|+||.++|.+|+.. | ++|++|||+||.++||+|+|||.
T Consensus 402 ------------~~~~~~~n~~ar~r~~~l~~~A~~~-------g-~~vl~TGn~se~~~Gy~t~~gd~ 450 (590)
T 3n05_A 402 ------------LTGLAEENLQSRLRGTTLMAISNQE-------G-HIVLAPGNKSELAVGYSTLYGDS 450 (590)
T ss_dssp ------------CCTHHHHHHHHHHHHHHHHHHHHHH-------T-CEEBCCCCHHHHHHTCCCSSCTT
T ss_pred ------------ccchhhhHHHHHHHHHHHHHHHHhc-------C-CEEEeCCCHHHHhcCchhhcCCC
Confidence 2578899999999999999887655 6 59999999999999999999984
No 5
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp}
Probab=100.00 E-value=4.7e-47 Score=380.93 Aligned_cols=252 Identities=21% Similarity=0.185 Sum_probs=216.8
Q ss_pred CCceEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhh-hHHHHHHHHHHhcccCC
Q 009550 1 MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTV-THAWECLKDLLLGDWTD 79 (532)
Q Consensus 1 m~~~rVAlvQ~~~~~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~~~~~-~~~~~~l~~la~~~~~~ 79 (532)
++.||||++|+++..+|++.|++++.+++++|+++|||||||||++++||.+.++....... ....+.+.++++ ++
T Consensus 18 ~~~~kva~~Q~~~~~~d~~~Nl~~~~~~i~~A~~~gadlvvfPE~~l~gy~~~~~~~~a~~~~~~~~~~l~~la~---~~ 94 (281)
T 3p8k_A 18 GSHMKVQIYQLPIVFGDSSKNETQITQWFEKNMNAEVDVVVLPEMWNNGYDLEHLNEKADNNLGQSFSFIKHLAE---KY 94 (281)
T ss_dssp TSEEEEEEEECCCCTTCHHHHHHHHHHHHHHHCCTTCCEEECCSSTTTTTCGGGHHHHSEETTHHHHHHHHHHHH---HH
T ss_pred CCCcEEEEEeccCCcCCHHHHHHHHHHHHHHHHhCCCcEEEcCCCccCCCChhHHHHhhhccCcHHHHHHHHHHh---hC
Confidence 45799999999999999999999999999999999999999999999999987654333322 334455555555 58
Q ss_pred CeEEEEcee-eeeCCeeeEEEEEEe-CCEEEEEEecccCCCCCCcccccceeecCCCCcccccccchhhhhhccCceecc
Q 009550 80 GILCSFGMP-VIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPF 157 (532)
Q Consensus 80 ~i~iivG~~-~~~~~~lyNsa~vi~-~G~il~~y~K~~L~~~g~f~E~~~f~~G~~~~~~~~~~lp~~~~~~~~~~~~p~ 157 (532)
++++++|.+ ++.++++||++++|+ +|++++.|+|+||+++ |.|.+||+||+...
T Consensus 95 ~i~iv~G~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~--f~E~~~f~~G~~~~---------------------- 150 (281)
T 3p8k_A 95 KVDIVAGSVSNIRNNQIFNTAFSVNKSGQLINEYDKVHLVPM--LREHEFLTAGEYVA---------------------- 150 (281)
T ss_dssp TCEEEEEEEEEEETTEEEEEEEEECTTSCEEEEEECSCCCTT--TTGGGTCCCCSSCC----------------------
T ss_pred CeEEEEeeeEEccCCcEEEEEEEEcCCCeEEEEEeeEECCCC--cCccccCcCCCCCc----------------------
Confidence 999999975 567889999999998 8999999999999863 68999999998641
Q ss_pred cceeEEe-CCceEEEEeeccCCCCChHHHHHHhCCCeEEEEcCCCCccccchHHHHHHHHHHHHHcCcEEEEEcCcCCCC
Q 009550 158 GYGFIQF-LDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDG 236 (532)
Q Consensus 158 g~~vf~~-~~~riGv~IC~D~~~pe~~~~~la~~GadlIl~psas~~~~g~~~~~~~l~~~rA~e~~~~vv~aN~~G~~~ 236 (532)
.+|++ +++|||++||||+|||+ +.+.++.+|||+|++|++|+... ..+|..++++||.||++++++||++|.+
T Consensus 151 --~v~~~~~~~~ig~~IC~D~~fpe-~~r~~~~~Gadli~~psa~~~~~--~~~~~~~~~arA~en~~~vv~~n~~G~~- 224 (281)
T 3p8k_A 151 --EPFQLSDGTYVTQLICYDLRFPE-LLRYPARSGAKIAFYVAQWPMSR--LQHWHSLLKARAIENNMFVIGTNSTGFD- 224 (281)
T ss_dssp --CCEECTTCCEEEEEEGGGGGCTH-HHHHHHHTTCCEEEEEECCBGGG--HHHHHHHHHHHHHHHTSEEEEEECEEEC-
T ss_pred --eeEEeCCCcEEEEEEecCCCCcH-HHHHHHHCCCCEEEECCCCCCcc--HHHHHHHHHHHHHHcCCEEEEEccCcCC-
Confidence 28999 99999999999999996 67899999999999999998643 4566778999999999999999999988
Q ss_pred CceeeeccEEEE-eCCeEEEeeCCCCCCceeEEEEEeechhhhhhhccCCchhh
Q 009550 237 GRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQE 289 (532)
Q Consensus 237 ~~~~f~G~S~I~-p~G~ila~~~~f~e~~~~iv~a~iDl~~~~~~R~~~~~~~~ 289 (532)
++..|.|+|+|+ |+|+++++ +.++ +++++++||++.+++.|.+.+.+++
T Consensus 225 ~~~~~~G~S~ii~p~G~vl~~-~~~~---e~~l~~~id~~~~~~~R~~~p~~~~ 274 (281)
T 3p8k_A 225 GNTEYAGHSIVINPNGDLVGE-LNES---ADILTVDLNLNEVEQQRENIPVFKS 274 (281)
T ss_dssp SSCEEECCCEEECTTSCEEEE-CCSS---CEEEEEEEETHHHHHHHHHSCGGGT
T ss_pred CCcEEeeeEEEECCCCCEEEe-cCCC---CeEEEEEEcHHHHHHHHHhCcchhh
Confidence 778999999999 99999999 5553 4799999999999999988777654
No 6
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A
Probab=100.00 E-value=1.2e-46 Score=374.23 Aligned_cols=247 Identities=24% Similarity=0.247 Sum_probs=208.2
Q ss_pred eEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhhH--HHHHHHHHHhcccCCCe
Q 009550 4 LKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTH--AWECLKDLLLGDWTDGI 81 (532)
Q Consensus 4 ~rVAlvQ~~~~~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~~~~~~~--~~~~l~~la~~~~~~~i 81 (532)
||||++|+++..+|++.|++++.+++++|+++|+|||||||+++|||.+.+......+.+. ..+.++.|++.++++++
T Consensus 2 ~rva~~Q~~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~~~gy~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~~ 81 (262)
T 3ivz_A 2 VKVAYVQMNPQILEPDKNYSKAEKLIKEASKQGAQLVVLPELFDTGYNFETREEVFEIAQKIPEGETTTFLMDVARDTGV 81 (262)
T ss_dssp CEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCSCCSCHHHHHHHCBCTTTSHHHHHHHHHHHHHCC
T ss_pred eEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCCEEEeCCCcccCCCCCCHHHHHHhcCccCCCHHHHHHHHHHHHcCc
Confidence 9999999999999999999999999999999999999999999999987653111111110 01233444444446899
Q ss_pred EEEEceeeeeCCeeeEEEEEEe-CCEEEEEEecccCCCCCCcccccceeecCCCCcccccccchhhhhhccCceecccce
Q 009550 82 LCSFGMPVIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYG 160 (532)
Q Consensus 82 ~iivG~~~~~~~~lyNsa~vi~-~G~il~~y~K~~L~~~g~f~E~~~f~~G~~~~~~~~~~lp~~~~~~~~~~~~p~g~~ 160 (532)
++++|++++.++++||++++|+ +| +++.|+|+||+ |.|.+||+||+... .
T Consensus 82 ~iv~G~~~~~~~~~yNs~~~i~~~G-~~~~y~K~hL~----~~E~~~f~~G~~~~------------------------~ 132 (262)
T 3ivz_A 82 YIVAGTAEKDGDVLYNSAVVVGPRG-FIGKYRKIHLF----YREKFFFEPGDLGF------------------------R 132 (262)
T ss_dssp EEEEEEEEEETTEEEEEEEEEETTE-EEEEEECSSCC----GGGGGTCBCCCSCS------------------------C
T ss_pred EEEEeEEEeeCCcEEEEEEEEcCCe-eEEEEeecccC----CchhceEeCCCCCc------------------------e
Confidence 9999999999999999999997 67 99999999995 57999999998321 2
Q ss_pred eEEeCCceEEEEeeccCCCCChHHHHHHhCCCeEEEEcCCCCccccchHHHHHHHHHHHHHcCcEEEEEcCcCCCCCcee
Q 009550 161 FIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLY 240 (532)
Q Consensus 161 vf~~~~~riGv~IC~D~~~pe~~~~~la~~GadlIl~psas~~~~g~~~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~ 240 (532)
+|+++++|+|++||||+|||+ +.+.++.+|||+|++|++|+.. +|..++++||.||++++++||++|.+ ++..
T Consensus 133 v~~~~~~~ig~~IC~D~~fpe-~~r~~~~~ga~li~~ps~~~~~-----~~~~~~~~rA~en~~~vv~~n~~G~~-~~~~ 205 (262)
T 3ivz_A 133 VFDLGFMKVGVMICFDWFFPE-SARTLALKGADVIAHPANLVMP-----YAPRAMPIRALENKVYTVTADRVGEE-RGLK 205 (262)
T ss_dssp EEECSSCEEEECCGGGGGSHH-HHHHHHHTTCSEEEEEECCCSS-----CHHHHHHHHHHHHTCEEEEEECCSEE-TTEE
T ss_pred EEEECCEEEEEEEecCCCchH-HHHHHHHCCCCEEEEcCCCCch-----HHHHHHHHHHHhcCcEEEEECCCCcC-CCce
Confidence 899999999999999999996 6789999999999999998753 46678899999999999999999988 6788
Q ss_pred eeccEEEE-eCCeEEEeeCCCCCCceeEEEEEeechhhhhhhcc--CCchhh
Q 009550 241 FDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGS--ISSFQE 289 (532)
Q Consensus 241 f~G~S~I~-p~G~ila~~~~f~e~~~~iv~a~iDl~~~~~~R~~--~~~~~~ 289 (532)
|.|+|+|+ |+|+++++++.++ +++++++||++.+++.|.+ .+.+++
T Consensus 206 ~~G~S~ii~p~G~il~~~~~~~---~~~~~~~id~~~~~~~R~~~~~p~l~~ 254 (262)
T 3ivz_A 206 FIGKSLIASPKAEVLSMASETE---EEVGVAEIDLSLVRNKRINDLNDIFKD 254 (262)
T ss_dssp CCCCCEEECTTSCEEEECCSSC---CEEEEEECCHHHHHCCEEETTEEHHHH
T ss_pred EeeeEEEECCCCCEeecCCCCC---ceEEEEEEcHHHHHHHhhcccCchhhh
Confidence 99999999 9999999998764 3699999999999988876 454443
No 7
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP}
Probab=100.00 E-value=4.7e-47 Score=381.36 Aligned_cols=251 Identities=20% Similarity=0.193 Sum_probs=205.3
Q ss_pred CceEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhh-HHHHHHHHHHhcccCCC
Q 009550 2 RLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVT-HAWECLKDLLLGDWTDG 80 (532)
Q Consensus 2 ~~~rVAlvQ~~~~~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~~~~~~-~~~~~l~~la~~~~~~~ 80 (532)
.+||||++|+++..+|++.|++++.+++++|+++|+|||||||+++|||.+.++. ..+.+ ...+.++.|++.+++++
T Consensus 19 ~~~rva~~Q~~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~l~gy~~~d~~--~~~a~~~~~~~~~~l~~~a~~~~ 96 (283)
T 3hkx_A 19 SHMRIALMQHTARPLDPQHNLDLIDDAAARASEQGAQLLLTPELFGFGYVPSQIC--AQVSAEQVDAARSRLRGIARDRG 96 (283)
T ss_dssp EEEEEEEEEBCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTGGGCSCHHHHH--HHCCHHHHHHHHHHHHHHHHHTT
T ss_pred CccEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCcccCCChHHHH--HHhccccCCHHHHHHHHHHHHhC
Confidence 4699999999999999999999999999999999999999999999999886521 11111 11234444555455689
Q ss_pred eEEEEceeeeeC-CeeeEEEEEEe-CCEEEEEEecccCCCCCCcccccceeecCCCCcccccccchhhhhhccCceeccc
Q 009550 81 ILCSFGMPVIKG-SERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFG 158 (532)
Q Consensus 81 i~iivG~~~~~~-~~lyNsa~vi~-~G~il~~y~K~~L~~~g~f~E~~~f~~G~~~~~~~~~~lp~~~~~~~~~~~~p~g 158 (532)
+++++|++++.+ +++||++++|+ +|++++.|+|+||+++ .|.+||+||+...
T Consensus 97 i~iv~G~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~---~E~~~f~~G~~~~----------------------- 150 (283)
T 3hkx_A 97 IALVWSLPGPEGPEQRGITAELADEHGEVLASYQKVQLYGP---EEKAAFVPGEQPP----------------------- 150 (283)
T ss_dssp SEEEECCBCSSCTTTCCBEEEEECTTSCEEEEEECSSCCHH---HHHHHSCCCCSCC-----------------------
T ss_pred CEEEEEEEEEcCCCCEEEEEEEEcCCCcEEEEEccccCCCc---CchhhccCCCCCc-----------------------
Confidence 999999998865 78999999998 8999999999999753 5899999998631
Q ss_pred ceeEEeCCceEEEEeeccCCCCChHHHHHHhCCCeEEEEcCCCCccccchHHHHHHHHHHHHHcCcEEEEEcCcCCCCCc
Q 009550 159 YGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGR 238 (532)
Q Consensus 159 ~~vf~~~~~riGv~IC~D~~~pe~~~~~la~~GadlIl~psas~~~~g~~~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~ 238 (532)
.+|+++++|||++||||+|||+ +.+.++.+|||+|++|++|+...+ .+|..++++||.||++++++||++|.+ ++
T Consensus 151 -~v~~~~~~~ig~~IC~D~~fpe-~~r~l~~~Ga~li~~ps~~~~~~~--~~~~~~~~~rA~en~~~vv~~n~~G~~-~~ 225 (283)
T 3hkx_A 151 -PVLSWGGRQLSLLVCYDVEFPE-MVRAAAARGAQLVLVPTALAGDET--SVPGILLPARAVENGITLAYANHCGPE-GG 225 (283)
T ss_dssp -CEEEETTEEEEECCGGGGGSHH-HHHHHHHTTCSEEEEECCCBSCCT--HHHHTHHHHHHHHHTCEEEEECBEEEE-TT
T ss_pred -eEEEECCEEEEEEEecCcCCHH-HHHHHHHCCCCEEEECCCCCCccc--HHHHHHHHHHHHHhCCEEEEEccccCC-CC
Confidence 2899999999999999999996 788999999999999999987554 466788999999999999999999988 67
Q ss_pred eeeeccEEEE-eCCeEEEeeCCCCCCceeEEEEEeechhhhhhhccCCchhh
Q 009550 239 LYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQE 289 (532)
Q Consensus 239 ~~f~G~S~I~-p~G~ila~~~~f~e~~~~iv~a~iDl~~~~~~R~~~~~~~~ 289 (532)
..|.|.|+|+ |+|+++++++ ++ +++++++||++.+++.|.+.+.+++
T Consensus 226 ~~~~G~S~ii~p~G~vl~~~~-~~---e~~l~a~id~~~~~~~R~~~~~~~~ 273 (283)
T 3hkx_A 226 LVFDGGSVVVGPAGQPLGELG-VE---PGLLVVDLPDQSQDAGSDSADYLQD 273 (283)
T ss_dssp EEEECCCEEECTTSCEEEECC-SS---CEEEEEEEEC----------CHHHH
T ss_pred eEEeeEEEEECCCCCEEEecC-CC---CeEEEEEECHHHHHHHHHhCChhHh
Confidence 8999999999 9999999987 43 4799999999999999987776654
No 8
>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV}
Probab=100.00 E-value=7.3e-46 Score=369.31 Aligned_cols=250 Identities=12% Similarity=0.066 Sum_probs=212.9
Q ss_pred CCceEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhhHHHHHHHHHHhcccCCC
Q 009550 1 MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDG 80 (532)
Q Consensus 1 m~~~rVAlvQ~~~~~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~ 80 (532)
|+.||||++|+++..+|++.|++++.+++++| ++|+|||||||++++||...+......+.....+.+.++++ +++
T Consensus 1 M~~~kva~~Q~~~~~~d~~~n~~~~~~~i~~a-~~gadlvv~PE~~~~gy~~~~~~~a~~~~~~~~~~l~~~a~---~~~ 76 (266)
T 2e11_A 1 MHDLRISLVQGSTRWHDPAGNRDYYGALLEPL-AGQSDLVILPETFTSGFSNEAIDKAEDMDGPTVAWIRTQAA---RLG 76 (266)
T ss_dssp CCCEEEEEEECCCCTTCHHHHHHHHHHHHGGG-TTTCSEEECCTTTTTCSCSGGGGGCEETTSHHHHHHHHHHH---HHT
T ss_pred CCccEEEEEeCCCCcCCHHHHHHHHHHHHHHh-cCCCCEEECCCCccccCChhHHHhhccCCCHHHHHHHHHHH---HhC
Confidence 88999999999999999999999999999999 88999999999999999754433322333344555666665 579
Q ss_pred eEEEEceeeeeCCeeeEEEEEEe-CCEEEEEEecccCCCCCCcccccceeecCCCCcccccccchhhhhhccCceecccc
Q 009550 81 ILCSFGMPVIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGY 159 (532)
Q Consensus 81 i~iivG~~~~~~~~lyNsa~vi~-~G~il~~y~K~~L~~~g~f~E~~~f~~G~~~~~~~~~~lp~~~~~~~~~~~~p~g~ 159 (532)
+++++|++++.++++||++++|+ +|+++ .|+|+||+++ +.|.+||+||+..
T Consensus 77 ~~iv~G~~~~~~~~~yNs~~~i~~~G~i~-~y~K~hL~~~--~~E~~~f~~G~~~------------------------- 128 (266)
T 2e11_A 77 AAITGSVQLRTEHGVFNRLLWATPDGALQ-YYDKRHLFRF--GNEHLRYAAGRER------------------------- 128 (266)
T ss_dssp SEEEEEEEEEETTEEEEEEEEECTTSCEE-EEECSSCCGG--GTTTTTSBCCCSC-------------------------
T ss_pred CEEEEeeeEccCCcEEEEEEEECCCCCEE-EEeeeccCCC--cChhhhccCCCCc-------------------------
Confidence 99999999988899999999997 89999 9999999876 4689999999754
Q ss_pred eeEEeCCceEEEEeeccCCCCChHHHHHH---hC---CCeEEEEcCCCCccccchHHHHHHHHHHHHHcCcEEEEEcCcC
Q 009550 160 GFIQFLDTAVAAEICEELFTPIPPHADLA---LN---GVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQG 233 (532)
Q Consensus 160 ~vf~~~~~riGv~IC~D~~~pe~~~~~la---~~---GadlIl~psas~~~~g~~~~~~~l~~~rA~e~~~~vv~aN~~G 233 (532)
.+|+++++|+|++||||+|||+. .+.++ .+ |||+|++|++|+... ..+|..++++||.||++++++||++|
T Consensus 129 ~v~~~~~~~ig~~ICyD~~fpe~-~r~~~~~~~~~~~ga~~i~~~s~w~~~~--~~~~~~~~~~rA~en~~~vv~an~~G 205 (266)
T 2e11_A 129 LCVEWKGWRINPQVCYDLRFPVF-CRNRFDVERPGQLDFDLQLFVANWPSAR--AYAWKTLLRARAIENLCFVAAVNRVG 205 (266)
T ss_dssp CCEEETTEEEEEEEGGGGGCTTT-TCCCBSSSSTTSBSCSEEEEEECCCGGG--HHHHHHHHHHHHHHTTSEEEEEECEE
T ss_pred eEEEECCEEEEEEEEeccCCHHH-HHHHHhhhhccCCCCcEEEEeCCCCCCc--hHHHHHHHHHHHHhcCcEEEEEcCCc
Confidence 28999999999999999999974 45554 54 999999999987643 34677889999999999999999999
Q ss_pred CCCCceeeeccEEEE-eCCeEEEeeCCCCCCceeEEEEEeechhhhhhhccCCchhh
Q 009550 234 CDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQE 289 (532)
Q Consensus 234 ~~~~~~~f~G~S~I~-p~G~ila~~~~f~e~~~~iv~a~iDl~~~~~~R~~~~~~~~ 289 (532)
.++++..|.|+|+|+ |+|+++++++ ++ +++++++||++.++..|.+.+.+.+
T Consensus 206 ~~~~~~~~~G~S~ii~p~G~v~~~~~-~~---e~~l~~~id~~~~~~~R~~~~~~~~ 258 (266)
T 2e11_A 206 VDGNQLHYAGDSAVIDFLGQPQVEIR-EQ---EQVVTTTISAAALAEHRARFPAMLD 258 (266)
T ss_dssp ECTTSCEEEEEEEEECTTSCEEEEEE-SS---CEEEEEEECHHHHHHHHHHSCGGGG
T ss_pred CCCCCceEeeeEEEECCCCceeeecC-CC---CeEEEEEEcHHHHHHHHHhCChhhh
Confidence 885668899999999 9999999988 53 4799999999999999988777654
No 9
>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus}
Probab=100.00 E-value=1.2e-45 Score=369.65 Aligned_cols=254 Identities=15% Similarity=0.092 Sum_probs=214.6
Q ss_pred CCceEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccc-hhhhHHHHHHHHHHhcccCC
Q 009550 1 MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLEL-DTVTHAWECLKDLLLGDWTD 79 (532)
Q Consensus 1 m~~~rVAlvQ~~~~~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~~-~~~~~~~~~l~~la~~~~~~ 79 (532)
|+.||||++|+++. +|++.|++++.+++++|++.|+|||||||++++||.+.+..... .+.....+.|.++++ ++
T Consensus 1 M~~~~va~vQ~~~~-~d~~~n~~~~~~~i~~a~~~gadlvv~PE~~~~gy~~~~~~~~~~~~~~~~~~~l~~~a~---~~ 76 (276)
T 2w1v_A 1 MSTFRLALIQLQVS-SIKSDNLTRACSLVREAAKQGANIVSLPECFNSPYGTTYFPDYAEKIPGESTQKLSEVAK---ES 76 (276)
T ss_dssp CCEEEEEEEECCCC-SCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTSCCSTTTHHHHCBCSSSHHHHHHHHHHH---HH
T ss_pred CCccEEEEEecccc-CCHHHHHHHHHHHHHHHHHCCCCEEEcCCCcccCCCHHHHHHHhccCCCHHHHHHHHHHH---Hc
Confidence 88999999999965 99999999999999999999999999999999999876543211 112234445555555 57
Q ss_pred CeEEEEc-eeeeeCCeeeEEEEEEe-CCEEEEEEecccC-----CCCCCcccccceeecCCCCcccccccchhhhhhccC
Q 009550 80 GILCSFG-MPVIKGSERYNCQVLCL-NRKIIMIRPKLWL-----ANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQ 152 (532)
Q Consensus 80 ~i~iivG-~~~~~~~~lyNsa~vi~-~G~il~~y~K~~L-----~~~g~f~E~~~f~~G~~~~~~~~~~lp~~~~~~~~~ 152 (532)
++++++| .+++.++++||++++|+ +|++++.|+|+|| |.+..|.|.+||+||+..
T Consensus 77 ~~~iv~G~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~vP~~e~~~E~~~f~~G~~~------------------ 138 (276)
T 2w1v_A 77 SIYLIGGSIPEEDAGKLYNTCSVFGPDGSLLVKHRKIHLFDIDVPGKITFQESKTLSPGDSF------------------ 138 (276)
T ss_dssp TSEEECCCEEEEETTEEEEEEEEECTTSCEEEEEECSSCCEEEETTTEEEEGGGTCCCCCCC------------------
T ss_pred CeEEEecceeecCCCcEEEEEEEECCCCcEEEEEecccccCcccCccccccccccccCCCCc------------------
Confidence 9999999 45666889999999998 8999999999999 544446799999999754
Q ss_pred ceecccceeEEeCCceEEEEeeccCCCCChHHHHHHhCCCeEEEEcCCCCccccchHHHHHHHHHHHHHcCcEEEEEcCc
Q 009550 153 KSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQ 232 (532)
Q Consensus 153 ~~~p~g~~vf~~~~~riGv~IC~D~~~pe~~~~~la~~GadlIl~psas~~~~g~~~~~~~l~~~rA~e~~~~vv~aN~~ 232 (532)
.+|+++++|+|++||||+|||+ +.|.++.+|||+|++|++|+...++ .+|..++++||.||++++++||++
T Consensus 139 -------~v~~~~~~~ig~~ICyD~~fpe-~~r~~~~~ga~ll~~ps~~~~~~~~-~~~~~~~~~rA~en~~~vv~~n~~ 209 (276)
T 2w1v_A 139 -------STFDTPYCKVGLGICYDMRFAE-LAQIYAQRGCQLLVYPGAFNLTTGP-AHWELLQRARAVDNQVYVATASPA 209 (276)
T ss_dssp -------CEEECSSCEEEECCGGGGGCHH-HHHHHHHTTEEEEEEECCCCTTHHH-HHHHHHHHHHHHHHTCEEEEECCC
T ss_pred -------eeEEeCCceEEEEEEeccccHH-HHHHHHHcCCCEEEECCcCCCcCCH-HHHHHHHHHHHHHcCcEEEEeccc
Confidence 2899999999999999999996 6789999999999999998765443 456778999999999999999999
Q ss_pred CCCCCceeeeccEEEE-eCCeEEEeeCCCCCCceeEEEEEeechhhhhhhccCCchhh
Q 009550 233 GCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQE 289 (532)
Q Consensus 233 G~~~~~~~f~G~S~I~-p~G~ila~~~~f~e~~~~iv~a~iDl~~~~~~R~~~~~~~~ 289 (532)
|.+.++..|.|.|+|+ |+|+++++++. + +++++++||++.++..|.+.+.+.+
T Consensus 210 G~~~~~~~~~G~S~ii~p~G~v~~~~~~-~---e~~l~~~id~~~~~~~R~~~~~~~~ 263 (276)
T 2w1v_A 210 RDDKASYVAWGHSTVVDPWGQVLTKAGT-E---ETILYSDIDLKKLAEIRQQIPILKQ 263 (276)
T ss_dssp CCTTSSSCCCCCCEEECTTSCEEEECCS-S---SEEEEEEEEHHHHHHHHHHSCGGGS
T ss_pred ccCCCCceeeeEeEEECCCCCEeEEcCC-C---CeEEEEEEcHHHHHHHHHhCChhHh
Confidence 9885578899999999 99999999875 2 4799999999999999988777654
No 10
>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A
Probab=100.00 E-value=2.6e-44 Score=364.62 Aligned_cols=258 Identities=18% Similarity=0.209 Sum_probs=207.5
Q ss_pred CceEEEEEeccCCC--CCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccc----chhhhH--HHHHHHHHH
Q 009550 2 RLLKVATCNLNNWA--LDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLE----LDTVTH--AWECLKDLL 73 (532)
Q Consensus 2 ~~~rVAlvQ~~~~~--~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~----~~~~~~--~~~~l~~la 73 (532)
+.||||++|+++.. +|++.|++++.+++++|+++|+|||||||++++||.+.+++.. ..+.+. ..+.++.|+
T Consensus 2 ~~~~va~~Q~~~~~~~~d~~~n~~~~~~~i~~a~~~gadlvv~PE~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 81 (303)
T 1uf5_A 2 RQMILAVGQQGPIARAETREQVVVRLLDMLTKAASRGANFIVFPELALTTFFPRWHFTDEAELDSFYETEMPGPVVRPLF 81 (303)
T ss_dssp CEEEEEEEEBCCCCTTCCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTSCCGGGSCCCCHHHHHTTSBSSSSCTTTHHHH
T ss_pred ccEEEEEEEecCcccccCHHHHHHHHHHHHHHHHhcCCCEEEeccccccCCCccccccchhhhHHHHhhcCCCHHHHHHH
Confidence 46999999999887 9999999999999999999999999999999999986553222 111110 112233444
Q ss_pred hcccCCCeEEEEceeeee-CC---eeeEEEEEEe-CCEEEEEEecccCCCCCC------c--ccccceeecC-CCCcccc
Q 009550 74 LGDWTDGILCSFGMPVIK-GS---ERYNCQVLCL-NRKIIMIRPKLWLANDGN------Y--RELRWFTAWK-QKDQLED 139 (532)
Q Consensus 74 ~~~~~~~i~iivG~~~~~-~~---~lyNsa~vi~-~G~il~~y~K~~L~~~g~------f--~E~~~f~~G~-~~~~~~~ 139 (532)
+.++++++++++|++++. ++ ++||++++|+ +|+++++|+|+|||++++ | .|.+||+||+ ..
T Consensus 82 ~~a~~~~~~iv~G~~~~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~e~~p~~~~~~~E~~~f~~G~~~~----- 156 (303)
T 1uf5_A 82 EKAAELGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIVGKYRKIHLPGHKEYEAYRPFQHLEKRYFEPGDLGF----- 156 (303)
T ss_dssp HHHHHHTCEEEEEEEEEEEETTEEEEEEEEEEECTTSCEEEEEECCCCCSCSSCCTTCSSCCCHHHHCCCCSSCS-----
T ss_pred HHHHHhCeEEEEeeeEecCCCCCcceeeEEEEECCCCCEeeeEeeeecCCcccccccccccccchhhccCCCCCC-----
Confidence 444468999999999874 45 7999999998 699999999999985544 3 6889999997 42
Q ss_pred cccchhhhhhccCceecccceeEEeCCceEEEEeeccCCCCChHHHHHHhCCCeEEEEcCCCCc---ccc-----chHHH
Q 009550 140 FQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHH---QLR-----KLDYR 211 (532)
Q Consensus 140 ~~lp~~~~~~~~~~~~p~g~~vf~~~~~riGv~IC~D~~~pe~~~~~la~~GadlIl~psas~~---~~g-----~~~~~ 211 (532)
.+|+++++|+|++||||+|||+ ..|.++.+|||+|++|+++++ ..+ ...+|
T Consensus 157 --------------------~v~~~~~~~ig~~ICyD~~fpe-~~r~l~~~ga~ll~~~~~~~~~~~~~~~~~~~~~~~~ 215 (303)
T 1uf5_A 157 --------------------PVYDVDAAKMGMFIANDRRWPE-AWRVMGLRGAEIICGGYNTPTHNPPVPQHDHLTSFHH 215 (303)
T ss_dssp --------------------CEEEETTEEEEECCGGGGGCHH-HHHHHHHTTCSEEEEEECCBSCCTTCGGGGGGHHHHH
T ss_pred --------------------ceEecCCceEEEEEecCccCHH-HHHHHHHCCCCEEEEecCCccccccccCCccccHHHH
Confidence 2899999999999999999996 678999999999977765443 222 22334
Q ss_pred HHHHHHHHHHcCcEEEEEcCcCCCCCceeeeccEEEE-eCCeEEEeeCCCCCCceeEEEEEeechhhhhhhcc-CCchhh
Q 009550 212 IRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGS-ISSFQE 289 (532)
Q Consensus 212 ~~l~~~rA~e~~~~vv~aN~~G~~~~~~~f~G~S~I~-p~G~ila~~~~f~e~~~~iv~a~iDl~~~~~~R~~-~~~~~~ 289 (532)
..+.++||.||++++++||++|.+ ++..|.|+|+|+ |+|+++++++.++ +++++++||++.++..|.+ .+.+++
T Consensus 216 ~~~~~~rA~en~~~vv~~n~~G~~-~~~~~~G~S~ii~p~G~vl~~~~~~~---~~~l~~~id~~~~~~~R~~~~~~~~~ 291 (303)
T 1uf5_A 216 LLSMQAGSYQNGAWSAAAGKAGME-ENCMLLGHSCIVAPTGEIVALTTTLE---DEVITAAVDLDRCRELREHIFNFKQH 291 (303)
T ss_dssp HHHHHHHHHHHTCEEEEEEBCEEE-TTEEECCCCEEECTTSCEEEECCSSS---SEEEEEEEEGGGGHHHHTTTTCHHHH
T ss_pred HHHHHhhhhcCCcEEEEECccccc-CCccccceeEEECCCCCEeccCCCCC---CcEEEEEEcHHHHHHHHhhcccchhc
Confidence 457899999999999999999987 567899999999 9999999987654 3799999999999999987 666544
No 11
>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1
Probab=100.00 E-value=4e-44 Score=361.38 Aligned_cols=252 Identities=19% Similarity=0.155 Sum_probs=207.9
Q ss_pred ceEEEEEeccCCCCCHHHHHHHHHHHHHHH--HHCCCeEEEcCCCCcCCCCCCcccccchhh-----hHHHHHHHHHHhc
Q 009550 3 LLKVATCNLNNWALDFDCNLKNIKESIGRA--KEAGAVIRLGPELEITGYGCEDHFLELDTV-----THAWECLKDLLLG 75 (532)
Q Consensus 3 ~~rVAlvQ~~~~~~d~~~N~~~i~~~i~~A--~~~gadLvVfPEl~ltGy~~~d~~~~~~~~-----~~~~~~l~~la~~ 75 (532)
.||||++|+++..+|++.|++++.+++++| ++.|+|||||||++++||.+.+.....+.. ....+.|.++++
T Consensus 10 ~~~va~vQ~~~~~~d~~~n~~~~~~~i~~a~~~~~gadlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~- 88 (291)
T 1f89_A 10 KIKVALVQLSGSSPDKMANLQRAATFIERAMKEQPDTKLVVLPECFNSPYSTDQFRKYSEVINPKEPSTSVQFLSNLAN- 88 (291)
T ss_dssp CEEEEEEECCCCCSCHHHHHHHHHHHHHHHHHHCTTEEEEECCTTTTSCSCHHHHHHHTTBCCSSSCCHHHHHHHHHHH-
T ss_pred cceEEEEeccCCcCCHHHHHHHHHHHHHHHhhccCCCeEEEcCCCcccCCChHHHHHHhhhhccCCCChHHHHHHHHHH-
Confidence 599999999966799999999999999999 889999999999999999765432222221 234445555655
Q ss_pred ccCCCeEEEEce-eeeeC--CeeeEEEEEEe-CCEEEEEEecccCC-----CCCCcccccceeecCCCCcccccccchhh
Q 009550 76 DWTDGILCSFGM-PVIKG--SERYNCQVLCL-NRKIIMIRPKLWLA-----NDGNYRELRWFTAWKQKDQLEDFQLPNEI 146 (532)
Q Consensus 76 ~~~~~i~iivG~-~~~~~--~~lyNsa~vi~-~G~il~~y~K~~L~-----~~g~f~E~~~f~~G~~~~~~~~~~lp~~~ 146 (532)
++++++++|. +++.+ +++||++++|+ +|+++++|+|+||+ .+..|.|.+||+||+..
T Consensus 89 --~~~~~iv~G~~~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hLf~e~~P~~~~~~E~~~f~~G~~~------------ 154 (291)
T 1f89_A 89 --KFKIILVGGTIPELDPKTDKIYNTSIIFNEDGKLIDKHRKVHLFDVDIPNGISFHESETLSPGEKS------------ 154 (291)
T ss_dssp --HSSCEEECCCEEEECTTTCCEEEEEEEECTTSCEEEEEECCCCC----------HHHHSCCCCCCC------------
T ss_pred --HcCcEEEeceeecccCCCCceEEEEEEECCCCcEEeEEeeeccCCCccCccccccccccccCCCCC------------
Confidence 6899999995 66655 78999999998 89999999999994 33356789999999753
Q ss_pred hhhccCceecccceeEEeCCceEEEEeeccCCCCChHHHHHHhCCCeEEEEcCCCCccccchHHHHHHHHHHHHHcCcEE
Q 009550 147 SVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVY 226 (532)
Q Consensus 147 ~~~~~~~~~p~g~~vf~~~~~riGv~IC~D~~~pe~~~~~la~~GadlIl~psas~~~~g~~~~~~~l~~~rA~e~~~~v 226 (532)
.+|+++++|||++||||+|||+ ..|.++.+|||+|++|++|+...++ .+|..++++||.||++++
T Consensus 155 -------------~v~~~~~~~ig~~ICyD~~fpe-~~r~l~~~Ga~ll~~ps~~~~~~~~-~~~~~~~~~rA~en~~~v 219 (291)
T 1f89_A 155 -------------TTIDTKYGKFGVGICYDMRFPE-LAMLSARKGAFAMIYPSAFNTVTGP-LHWHLLARSRAVDNQVYV 219 (291)
T ss_dssp -------------EEEEETTEEEEECCGGGGGCHH-HHHHHHHTTEEEEEEECCCBTTHHH-HHHHHHHHHHHHHHTSEE
T ss_pred -------------ceEecCCeeEEEEEecccCchH-HHHHHHhhCCCEEEECCcCCCCCcH-HHHHHHHHHHHHHcCCEE
Confidence 2899999999999999999996 6789999999999999998765443 456778999999999999
Q ss_pred EEEcCcCCCCCceeeeccEEEE-eCCeEEEeeCCCCCCceeEEEEEeechhhhhhhccCCchh
Q 009550 227 MYSNHQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQ 288 (532)
Q Consensus 227 v~aN~~G~~~~~~~f~G~S~I~-p~G~ila~~~~f~e~~~~iv~a~iDl~~~~~~R~~~~~~~ 288 (532)
++||++|...++..|.|.|+|+ |+|+++++++. + +++++++||++.++..|.+.+.+.
T Consensus 220 v~~n~~G~~~~~~~~~G~S~ii~p~G~vl~~~~~-~---e~~l~~~id~~~~~~~R~~~~~~~ 278 (291)
T 1f89_A 220 MLCSPARNLQSSYHAYGHSIVVDPRGKIVAEAGE-G---EEIIYAELDPEVIESFRQAVPLTK 278 (291)
T ss_dssp EEECCCCCTTSSSCBCCCCEEECTTSCEEEECCS-S---SEEEEEEECHHHHHHHHHHSCCCC
T ss_pred EEecCccCCCCCCeeeeEEEEECCCCCEEEecCC-C---CeEEEEEECHHHHHHHHHhCChhH
Confidence 9999999654678899999999 99999999864 2 479999999999999998766654
No 12
>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A
Probab=100.00 E-value=8.9e-43 Score=366.41 Aligned_cols=256 Identities=16% Similarity=0.128 Sum_probs=198.4
Q ss_pred CceEEEEEeccCCC-------CCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCc--ccccchhh-----hHHHH
Q 009550 2 RLLKVATCNLNNWA-------LDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCED--HFLELDTV-----THAWE 67 (532)
Q Consensus 2 ~~~rVAlvQ~~~~~-------~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d--~~~~~~~~-----~~~~~ 67 (532)
+.||||++|+++.. +|++.|++++.+++++|+++|||||||||++++||.... ......+. ....+
T Consensus 71 ~~~rVAlvQ~~i~~~~~~~~~~d~~~nl~~~~~li~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~ae~~~~~~~~~ 150 (405)
T 2vhh_A 71 RIVRVGAIQNSIVIPTTAPIEKQREAIWNKVKTMIKAAAEAGCNIVCTQEAWTMPFAFCTREKFPWCEFAEEAENGPTTK 150 (405)
T ss_dssp CEEEEEEEECCCCSCSSSCHHHHHHHHHHHHHHHHHHHHHTTCSEEECCTTTTSCSCC---------CCCBCTTTSHHHH
T ss_pred CCCEEEEEeccccccccccccccHHHHHHHHHHHHHHHHHCCCCEEEcCCcccccccccccchhhHHHHHhhccCCHHHH
Confidence 46999999998642 578999999999999999999999999999999996421 10001111 22334
Q ss_pred HHHHHHhcccCCCeEEEEceeeee---CCeeeEEEEEEe-CCEEEEEEecccCCCCCCcccccceeecCCCCcccccccc
Q 009550 68 CLKDLLLGDWTDGILCSFGMPVIK---GSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLP 143 (532)
Q Consensus 68 ~l~~la~~~~~~~i~iivG~~~~~---~~~lyNsa~vi~-~G~il~~y~K~~L~~~g~f~E~~~f~~G~~~~~~~~~~lp 143 (532)
.+.++|+ +++++|++|++++. ++++||++++|+ +|+++++|+|+|||+++.|.|++||+||+...
T Consensus 151 ~l~~lA~---~~~i~Iv~G~~e~~~~~~~~~yNsa~vi~p~G~i~~~YrK~hL~~~g~f~E~~~f~~G~~~~-------- 219 (405)
T 2vhh_A 151 MLAELAK---AYNMVIIHSILERDMEHGETIWNTAVVISNSGRYLGKHRKNHIPRVGDFNESTYYMEGNTGH-------- 219 (405)
T ss_dssp HHHHHHH---HTTCEEEEEEEEEETTTTTEEEEEEEEECTTSCEEEEEECSCCCC----------CCCCSCC--------
T ss_pred HHHHHHH---HCCEEEEEeceecccCCCCcEEEEEEEECCCCeEEEEEecccCCCCCCcCcccceeCCCCCC--------
Confidence 4555554 68999999999876 578999999998 89999999999999999999999999997521
Q ss_pred hhhhhhccCceecccceeEEeCCceEEEEeeccCCCCChHHHHHHhCCCeEEEEcCCCCccccchHHHHHHHHHHHHHcC
Q 009550 144 NEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRG 223 (532)
Q Consensus 144 ~~~~~~~~~~~~p~g~~vf~~~~~riGv~IC~D~~~pe~~~~~la~~GadlIl~psas~~~~g~~~~~~~l~~~rA~e~~ 223 (532)
.+|+++++|||++||||+|||+ ..+.++++|||+|++|++|+...+ ..+|..++++||.||+
T Consensus 220 ----------------~vf~~~~~riG~~ICyD~~fPe-~~r~la~~GAdill~psa~~~~~~-~~~w~~l~raRAiEn~ 281 (405)
T 2vhh_A 220 ----------------PVFETEFGKLAVNICYGRHHPQ-NWMMFGLNGAEIVFNPSATIGRLS-EPLWSIEARNAAIANS 281 (405)
T ss_dssp ----------------CEEEETTEEEEECCGGGGGCHH-HHHHHHHTTCSEEEEEECCBCTTT-HHHHHHHHHHHHHHHT
T ss_pred ----------------eeEEECCEEEEEEEeccccChH-HHHHHHHcCCCEEEEcccCCCCCC-HHHHHHHHHHHHHHcC
Confidence 2899999999999999999996 567899999999999999865433 2456678899999999
Q ss_pred cEEEEEcCcCCCC---------------CceeeeccEEEE-eCCeEEEeeCCCCCCceeEEEEEeechhhhhhhccCCch
Q 009550 224 GVYMYSNHQGCDG---------------GRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSF 287 (532)
Q Consensus 224 ~~vv~aN~~G~~~---------------~~~~f~G~S~I~-p~G~ila~~~~f~e~~~~iv~a~iDl~~~~~~R~~~~~~ 287 (532)
++++++|++|.+. +...|.|.|+|+ |+|+++++++.++ +++++++||++.+++.|.+.+.+
T Consensus 282 ~~Vv~aN~vG~~~~~~~~~~~~g~~~~~~~~~f~G~S~IidP~G~vla~~~~~~---e~il~aeiDl~~~~~~R~~~p~~ 358 (405)
T 2vhh_A 282 YFTVPINRVGTEQFPNEYTSGDGNKAHKEFGPFYGSSYVAAPDGSRTPSLSRDK---DGLLVVELDLNLCRQVKDFWGFR 358 (405)
T ss_dssp SEEEEEECEECCCCC-----------------EECCCCCBCTTSCBCCCCCSSS---CEEEEEEEETTHHHHHHHHHCTT
T ss_pred ceEEEeccccccccccccccccCccccccCceeccccceECCCCCEeeccCCCC---CeEEEEEECHHHHHHHHHhCCch
Confidence 9999999999762 235789999999 9999999887664 47999999999999999876665
Q ss_pred hh
Q 009550 288 QE 289 (532)
Q Consensus 288 ~~ 289 (532)
++
T Consensus 359 ~~ 360 (405)
T 2vhh_A 359 MT 360 (405)
T ss_dssp TT
T ss_pred hh
Confidence 43
No 13
>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer, thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A {Pseudomonas aeruginosa} PDB: 2plq_A
Probab=100.00 E-value=5.1e-42 Score=353.33 Aligned_cols=243 Identities=18% Similarity=0.156 Sum_probs=199.9
Q ss_pred CceEEEEEeccC----CCCCHHHHHHHHHHHHHHHHH--CCCeEEEcCCCCcCCCCCC--cccccchhhhH-HHHHHHHH
Q 009550 2 RLLKVATCNLNN----WALDFDCNLKNIKESIGRAKE--AGAVIRLGPELEITGYGCE--DHFLELDTVTH-AWECLKDL 72 (532)
Q Consensus 2 ~~~rVAlvQ~~~----~~~d~~~N~~~i~~~i~~A~~--~gadLvVfPEl~ltGy~~~--d~~~~~~~~~~-~~~~l~~l 72 (532)
..||||++|+++ ..+|++.|++++.+++++|++ +|+|||||||++++||... ++. ++... ..+.++.|
T Consensus 11 ~~~kValvQ~~i~~~~~~~d~~~Nl~~i~~~i~~A~~~~~gadLVVfPE~~l~G~~~~~~~~~---~~a~~~~~~~~~~l 87 (341)
T 2uxy_A 11 DTVGVAVVNYKMPRLHTAAEVLDNARKIAEMIVGMKQGLPGMDLVVFPEYSLQGIMYDPAEMM---ETAVAIPGEETEIF 87 (341)
T ss_dssp TEEEEEEECCBCCBCCSHHHHHHHHHHHHHHHHHHHHHCTTEEEEECCTTTTTBCCCSHHHHH---HHCBCSSSHHHHHH
T ss_pred CccEEEEEECCcccCCCccCHHHHHHHHHHHHHHHHhcCCCCcEEEeCCCcccccCCCHHHHH---HHhccCCCHHHHHH
Confidence 369999999984 457999999999999999987 7999999999999998643 111 11100 01234445
Q ss_pred HhcccCCCeEEEEcee-eeeC----CeeeEEEEEEe-CCEEEEEEecccCCCCCCcccccceeecCCCCcccccccchhh
Q 009550 73 LLGDWTDGILCSFGMP-VIKG----SERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEI 146 (532)
Q Consensus 73 a~~~~~~~i~iivG~~-~~~~----~~lyNsa~vi~-~G~il~~y~K~~L~~~g~f~E~~~f~~G~~~~~~~~~~lp~~~ 146 (532)
++.++++++++++|++ ++.+ +++||++++|+ +|+++++|+|+||+ .|.++|+||+..
T Consensus 88 ~~~a~~~~i~iv~G~~ge~~~~~~~~~~yNsa~vi~p~G~i~~~Y~K~hlf-----~e~~~f~pG~~~------------ 150 (341)
T 2uxy_A 88 SRACRKANVWGVFSLTGERHEEHPRKAPYNTLVLIDNNGEIVQKYRKIIPW-----CPIEGWYPGGQT------------ 150 (341)
T ss_dssp HHHHHHHTCEEEEEEEEECCTTTTSSCCEEEEEEECTTSCEEEEEECSSCC-----TTTCCCBCCCCC------------
T ss_pred HHHHHHhCcEEEEEeeeeEcCCCCCCceEEEEEEECCCCcEEEEEEeeccC-----CCccceeCCCCc------------
Confidence 5555568999999998 7653 34999999999 89999999999974 466789999764
Q ss_pred hhhccCceecccceeEEe-CCceEEEEeeccCCCCChHHHHHHhCCCeEEEEcCCCCccccchHHHHHHHHHHHHHcCcE
Q 009550 147 SVALKQKSVPFGYGFIQF-LDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGV 225 (532)
Q Consensus 147 ~~~~~~~~~p~g~~vf~~-~~~riGv~IC~D~~~pe~~~~~la~~GadlIl~psas~~~~g~~~~~~~l~~~rA~e~~~~ 225 (532)
.+|++ .|.|||++||||+|||+ +.|.++.+|||+|++|++|++ .+..+|..++++||.||+++
T Consensus 151 -------------~v~~~~~G~riG~~ICyD~~fpe-~~r~l~~~Gadlll~psa~~~--~~~~~~~~l~~arA~En~~~ 214 (341)
T 2uxy_A 151 -------------YVSEGPKGMKISLIIXDDGNYPE-IWRDCAMKGAELIVRCQGYMY--PAKDQQVMMAKAMAWANNCY 214 (341)
T ss_dssp -------------CCEECGGGCEEEEEEGGGGGSHH-HHHHHHHTTCSEEEEEECCBT--TCHHHHHHHHHHHHHHHTCE
T ss_pred -------------eEEECCCCCEEEEEEccCCcCcH-HHHHHHHcCCCEEEEcCCCCC--CcHHHHHHHHHHHHHhCCcE
Confidence 27888 57799999999999996 678999999999999999875 34567888999999999999
Q ss_pred EEEEcCcCCCCCceeeeccEEEE-eCCeEEEeeCCCCCCceeEEEEEeechhhhhhhccC
Q 009550 226 YMYSNHQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSI 284 (532)
Q Consensus 226 vv~aN~~G~~~~~~~f~G~S~I~-p~G~ila~~~~f~e~~~~iv~a~iDl~~~~~~R~~~ 284 (532)
+++||++|.+ ++..|.|+|+|+ |+|+++++++.++ +++++++||++.++..|...
T Consensus 215 vv~an~~G~~-~~~~~~G~S~Iidp~G~vla~~~~~~---e~il~a~id~~~~~~~R~~~ 270 (341)
T 2uxy_A 215 VAVANAAGFD-GVYSYFGHSAIIGFDGRTLGECGEEE---MGIQYAQLSLSQIRDARAND 270 (341)
T ss_dssp EEEEECEEEC-SSCEEECCCEEECTTSCEEEECCSCT---TCEEEEEEEHHHHHHHHHHC
T ss_pred EEEECCCCCC-CCceeeeEEEEECCCCCEEEECCCCC---CEEEEEEEcHHHHHHHHhhc
Confidence 9999999988 778999999999 9999999998764 37999999999988777643
No 14
>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori} PDB: 2dyv_A 2e2l_A 2e2k_A
Probab=100.00 E-value=1e-41 Score=350.26 Aligned_cols=247 Identities=18% Similarity=0.157 Sum_probs=201.0
Q ss_pred ceEEEEEeccC----CCCCHHHHHHHHHHHHHHHHH--CCCeEEEcCCCCcCCCCCCcccccchhhhH-HHHHHHHHHhc
Q 009550 3 LLKVATCNLNN----WALDFDCNLKNIKESIGRAKE--AGAVIRLGPELEITGYGCEDHFLELDTVTH-AWECLKDLLLG 75 (532)
Q Consensus 3 ~~rVAlvQ~~~----~~~d~~~N~~~i~~~i~~A~~--~gadLvVfPEl~ltGy~~~d~~~~~~~~~~-~~~~l~~la~~ 75 (532)
.||||++|+++ ..+|++.|++++.+++++|++ .|+|||||||++++||...+... .++... ..+.++.|++.
T Consensus 13 ~~~Va~vQ~~i~~~~~~~d~~~nl~~~~~li~~A~~~~~gadLVVfPE~~l~G~~~~~~~~-~~~a~~~~~~~~~~l~~~ 91 (334)
T 2dyu_A 13 GFLVAAIQFPVPIVNSRKDIDHNIESIIRTLHATKAGYPGVELIIFPEYSTQGLNTAKWLS-EEFLLDVPGKETELYAKA 91 (334)
T ss_dssp CEEEEEECCBCCCCCSHHHHHHHHHHHHHHHHHHHHHCTTEEEEECCTTTTTCCCTTTTTS-GGGCBCSSSHHHHHHHHH
T ss_pred ccEEEEEecCCccCCchhhHHHHHHHHHHHHHHHHhcCCCCcEEEcCCCccccCCCChhHH-HHhhccCCCHHHHHHHHH
Confidence 59999999984 357899999999999999987 79999999999999986543111 111111 11234444444
Q ss_pred ccCCCeEEEEceeeeeC-Ce--eeEEEEEEe-CCEEEEEEecccCCCCCCcccccceeecCCCCcccccccchhhhhhcc
Q 009550 76 DWTDGILCSFGMPVIKG-SE--RYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALK 151 (532)
Q Consensus 76 ~~~~~i~iivG~~~~~~-~~--lyNsa~vi~-~G~il~~y~K~~L~~~g~f~E~~~f~~G~~~~~~~~~~lp~~~~~~~~ 151 (532)
++++++++++|++++.+ ++ +||++++|+ +|++++.|+|+||+ .|.++|+||+...
T Consensus 92 a~~~~i~iv~G~~e~~~~~~~~~yNsa~vi~p~G~i~~~YrK~hlf-----~e~~~f~~G~~~~---------------- 150 (334)
T 2dyu_A 92 CKEAKVYGVFSIMERNPDSNKNPYNTAIIIDPQGEIILKYRKLFPW-----NPIEPWYPGDLGM---------------- 150 (334)
T ss_dssp HHHHTCEEEEEEEECCSSTTSCCEEEEEEECTTSCEEEEEECSSCC-----TTTCCCCCCCSCC----------------
T ss_pred HHHhCeEEEEeeEEECCCCCceeEEEEEEECCCCCEEEEEeeccCC-----CCcccCcCCCCCc----------------
Confidence 44689999999998753 44 999999999 89999999999974 4667899987531
Q ss_pred CceecccceeEEe-CCceEEEEeeccCCCCChHHHHHHhCCCeEEEEcCCCCccccchHHHHHHHHHHHHHcCcEEEEEc
Q 009550 152 QKSVPFGYGFIQF-LDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSN 230 (532)
Q Consensus 152 ~~~~p~g~~vf~~-~~~riGv~IC~D~~~pe~~~~~la~~GadlIl~psas~~~~g~~~~~~~l~~~rA~e~~~~vv~aN 230 (532)
.+|++ .|.|||++||||+|||| +.|.++.+|||+|++|++|+... ..+|..++++||.||++++++||
T Consensus 151 --------~v~~~~~g~~iG~~ICyD~~fpe-~~r~~~~~Gadlil~psaw~~~~--~~~~~~~~~arA~En~~~vv~an 219 (334)
T 2dyu_A 151 --------PVCEGPGGSKLAVCICHDGMIPE-LAREAAYKGCNVYIRISGYSTQV--NDQWILTNRSNAWHNLMYTVSVN 219 (334)
T ss_dssp --------CCEECGGGCEEEEEEGGGGGCHH-HHHHHHHTTCSEEEEEESSCTTS--HHHHHHHHHHHHHHHTCEEEEEE
T ss_pred --------eeEECCCCCEEEEEEECCCCchH-HHHHHHHcCCCEEEEeCCCCCCc--HHHHHHHHHHHHHhCCCEEEEEC
Confidence 27887 56799999999999996 67899999999999999987533 34777889999999999999999
Q ss_pred CcCCCCCceeeeccEEEE-eCCeEEEeeCCCCCCceeEEEEEeechhhhhhhccCCc
Q 009550 231 HQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISS 286 (532)
Q Consensus 231 ~~G~~~~~~~f~G~S~I~-p~G~ila~~~~f~e~~~~iv~a~iDl~~~~~~R~~~~~ 286 (532)
++|.+ ++..|.|+|+|+ |+|+++++++.++ +++++++||++.++..|.+.+.
T Consensus 220 ~~G~~-~~~~~~G~S~Iidp~G~vla~~~~~~---e~il~a~idl~~~~~~R~~~~~ 272 (334)
T 2dyu_A 220 LAGYD-NVFYYFGEGQICNFDGTTLVQGHRNP---WEIVTGEIYPKMADNARLSWGL 272 (334)
T ss_dssp CSBSS-SSCCCCCEEEEECTTSCEEEECCCCT---TCEEEEEECHHHHHHHHHHCST
T ss_pred CCcCC-CCeeeeeEEEEECCCCCEeeecCCCC---CeEEEEEEcHHHHHHHHhhCch
Confidence 99988 678899999999 9999999987664 3799999999999999987654
No 15
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1
Probab=100.00 E-value=1.5e-41 Score=361.88 Aligned_cols=255 Identities=17% Similarity=0.082 Sum_probs=210.0
Q ss_pred CCceEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhhH-HHHHHHHHHhcccCC
Q 009550 1 MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTH-AWECLKDLLLGDWTD 79 (532)
Q Consensus 1 m~~~rVAlvQ~~~~~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~~~~~~~-~~~~l~~la~~~~~~ 79 (532)
|+.||||++|+++. +|++.|++++.+++++|+++|||||||||++++||...+... .+... ..+.++.|++.++++
T Consensus 12 ~~~~kVa~vQ~~~~-~d~~~nl~~~~~li~~A~~~gadlvv~PE~~~~~~~~~~~~~--~~a~~~~~~~~~~l~~~A~~~ 88 (440)
T 1ems_A 12 TGRHFIAVCQMTSD-NDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFIGLNKNEQI--DLAMATDCEYMEKYRELARKH 88 (440)
T ss_dssp CSEEEEEEECBCCC-SCHHHHHHHHHHHHHHHHHTTCSEEEECTTCSCCCSSHHHHH--HHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCceEEEEecCCC-CCHHHHHHHHHHHHHHHHHCCCCEEECCCcccccCcchhHHH--HhhccCCCHHHHHHHHHHHHc
Confidence 45799999999985 899999999999999999999999999999999987532111 01110 122344455545578
Q ss_pred CeEEEEceee--e--eCCeeeEEEEEEe-CCEEEEEEecccCC-----CCCCcccccceeecCCCCcccccccchhhhhh
Q 009550 80 GILCSFGMPV--I--KGSERYNCQVLCL-NRKIIMIRPKLWLA-----NDGNYRELRWFTAWKQKDQLEDFQLPNEISVA 149 (532)
Q Consensus 80 ~i~iivG~~~--~--~~~~lyNsa~vi~-~G~il~~y~K~~L~-----~~g~f~E~~~f~~G~~~~~~~~~~lp~~~~~~ 149 (532)
++++++|++. . .++++||++++|+ +|+++++|+|+||+ .+..|.|++||+||+...
T Consensus 89 ~i~iv~G~~~~~e~~~~~~~yNs~~~i~~~G~i~~~yrK~hL~~~~~P~~~~~~E~~~f~~G~~~~-------------- 154 (440)
T 1ems_A 89 NIWLSLGGLHHKDPSDAAHPWNTHLIIDSDGVTRAEYNKLHLFDLEIPGKVRLMESEFSKAGTEMI-------------- 154 (440)
T ss_dssp TCEEEEEEEEEEETTEEEEEEEEEEEECTTSCEEEEEECCCCCEEEETTTEEEEGGGTCCCCCSCC--------------
T ss_pred CeEEEeccccccccCCCCcEEEEEEEECCCCcEEEEEeeeeecCccCCCCCcccccccccCCCCCc--------------
Confidence 9999999765 3 3568999999997 89999999999994 444568999999998642
Q ss_pred ccCceeccccee-EEeCCceEEEEeeccCCCCChHHHHHHhCCCeEEEEcCCCCccccchHHHHHHHHHHHHHcCcEEEE
Q 009550 150 LKQKSVPFGYGF-IQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMY 228 (532)
Q Consensus 150 ~~~~~~p~g~~v-f~~~~~riGv~IC~D~~~pe~~~~~la~~GadlIl~psas~~~~g~~~~~~~l~~~rA~e~~~~vv~ 228 (532)
+ |+++++|+|++||||+|||+ ..+.++.+|||+|++|++|+...++ .+|..++++||.||++++++
T Consensus 155 -----------~~~~~~~~~iG~~ICyD~~fpe-~~r~l~~~Ga~il~~psa~~~~~~~-~~~~~~~~arA~En~~~vv~ 221 (440)
T 1ems_A 155 -----------PPVDTPIGRLGLSICYDVRFPE-LSLWNRKRGAQLLSFPSAFTLNTGL-AHWETLLRARAIENQCYVVA 221 (440)
T ss_dssp -----------CCEEETTEEECCCCGGGGGCHH-HHHHHHHTTCSEEECCBCCCHHHHH-HHHHHHHHHHHHHHTCEEEE
T ss_pred -----------eeEECCCeeEEEEEeccccChH-HHHHHHHcCCcEEEECCcCCCCCcH-HHHHHHHHHHHHhcCcEEEE
Confidence 4 89999999999999999996 6789999999999999998765544 36667899999999999999
Q ss_pred EcCcCCCCCceeeeccEEEE-eCCeEEEeeCCCCCCceeEEEEEeechhhhhhhccCCchhh
Q 009550 229 SNHQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQE 289 (532)
Q Consensus 229 aN~~G~~~~~~~f~G~S~I~-p~G~ila~~~~f~e~~~~iv~a~iDl~~~~~~R~~~~~~~~ 289 (532)
||++|.+.++..|.|+|+|+ |+|+++++++. ++++++++||++.++..|...+.+..
T Consensus 222 an~~G~~~~~~~~~G~S~ii~P~G~vla~~~~----~e~il~a~idl~~~~~~R~~~~~~~~ 279 (440)
T 1ems_A 222 AAQTGAHNPKRQSYGHSMVVDPWGAVVAQCSE----RVDMCFAEIDLSYVDTLREMQPVFSH 279 (440)
T ss_dssp CBBEEEEETTEEEECCCEEECTTSCEEEECCS----SSCEEEEEEEHHHHHHHHHHSCGGGS
T ss_pred ecccccCCCCceeeeeeEEECCCCCeeccCCC----CCcEEEEEeCHHHHHHHHHhCChhhh
Confidence 99999774558899999999 99999999863 24799999999999999988777654
No 16
>3q4g_A NH(3)-dependent NAD(+) synthetase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 2.40A {Vibrio cholerae} SCOP: c.26.2.0
Probab=99.98 E-value=2.4e-32 Score=271.08 Aligned_cols=164 Identities=25% Similarity=0.307 Sum_probs=130.3
Q ss_pred CCcHHHHhcchhhHHHHHHHHhCCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCC
Q 009550 325 HSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTD 404 (532)
Q Consensus 325 ~~~~~~~~~~~~~~L~~~l~~~~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (532)
+++.+++.+ ++.||+||++++|+++++||||||+|||++|+|+ ++++++ +|.+.+ |..
T Consensus 18 ~~~~~~i~~-~v~~L~d~l~~~g~~~vvvglSGGvDSal~a~l~----~~A~~~--------------Lg~~~~---~~~ 75 (279)
T 3q4g_A 18 IDPQFEIER-RVAFIKRKLTEARYKSLVLGISGGVDSTTCGRLA----QLAVEE--------------LNQQHN---TTE 75 (279)
T ss_dssp CCHHHHHHH-HHHHHHHHHHHHTCCEEEEECCSSHHHHHHHHHH----HHHHHH--------------HHHHTT---CSC
T ss_pred CCHHHHHHH-HHHHHHHHHHHcCCCCEEEEccCCHHHHHHHHHH----HHHHHH--------------hCcccc---cCC
Confidence 466666666 5699999999999999999999999999988876 233454 331100 000
Q ss_pred hHHhhcceEEEEecCCCCCCHHhHHHHHHHHHHhCC-ceEEEecHHHHHHHHH----HhHhhhCCCCCcccCCCcccccc
Q 009550 405 SREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGS-WHLDVSIDTVVSAFLS----LFQTLTGKRPCYKVDGGSNVENL 479 (532)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~s~~~~~~~a~~la~~lg~-~~~~i~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 479 (532)
.++++++|| ++++.+.++|+++|+.+|+ +|++|||+++++++.. .|.+.+ .. ..|....|+
T Consensus 76 ------~~v~av~~p--~~~~~~~~~A~~~a~~lgi~~~~~i~i~~~~~~~~~~~~~~l~~~~-~~-----~~~~~~~~~ 141 (279)
T 3q4g_A 76 ------YQFIAVRLP--YGEQKDEDEAQLALSFIRPTHSVSVNIKAGVDGLHAASHHALANTG-LI-----PSDPAKVDF 141 (279)
T ss_dssp ------CEEEEEECC--SSSCSCHHHHHHHHHHHCCSEEEECCCHHHHHHHHHHHHHHHHHHT-CS-----CSSCCCHHH
T ss_pred ------ceEEEEEec--CCChHHHHHHHHHHHHhCCCeEEEEECHHHHHHHHHHHHHHhhhhc-cc-----ccCCCcccc
Confidence 058999999 4566778999999999999 9999999999999877 566542 10 113346899
Q ss_pred chhhhhhhhhHHHHHHHhhcCccccCCCCcEEEEcCCCccccccccccccCCC
Q 009550 480 GLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKVFDL 532 (532)
Q Consensus 480 ~~~N~qaR~R~~~l~~~a~~~~~~~~~~~~~lvlgT~n~sE~~~Gy~T~ygd~ 532 (532)
+++|+|||+||.+||.+|+.. | ++|+||||+||.++||||||||.
T Consensus 142 ~~~NiqaR~R~~~Ly~~A~~~-------g-~lVlgTgn~sE~~~Gy~TkyGD~ 186 (279)
T 3q4g_A 142 IKGNVKARARMVAQYEIAGYV-------G-GLVLGTDHSAENITGFYTKFGDG 186 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------T-EEEBCCCCHHHHHHTCSCTTTTT
T ss_pred hhhhHHHHHHHHHHHHHHHHC-------C-CEEecCccHHhhhccchhhcCCc
Confidence 999999999999999888766 6 59999999999999999999994
No 17
>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein structure initiative; 2.20A {Burkholderia pseudomallei} SCOP: c.26.2.0
Probab=99.97 E-value=1.6e-30 Score=258.10 Aligned_cols=162 Identities=23% Similarity=0.305 Sum_probs=127.0
Q ss_pred CCcHHHHhcchhhHHHHHHHHhCCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCC
Q 009550 325 HSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTD 404 (532)
Q Consensus 325 ~~~~~~~~~~~~~~L~~~l~~~~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (532)
+++.+++.+ ++.||+||++++|+++++||||||+||+++|+|+. +++++ +|.... +
T Consensus 24 ~~~~~~i~~-~v~~L~d~l~~~g~~~vvvglSGGiDSal~a~La~----~A~da--------------LG~~~~---~-- 79 (285)
T 3dpi_A 24 FDARDEAER-RIGFVADYLRTAGLRACVLGISGGIDSSTAGRLAQ----LAVER--------------LRASGY---D-- 79 (285)
T ss_dssp CCHHHHHHH-HHHHHHHHHHHHTCCEEEEECCSSHHHHHHHHHHH----HHHHH--------------HHHTTC---C--
T ss_pred CCHHHHHHH-HHHHHHHHHHHcCCCcEEEEccCChhHHHHHHHHH----HHHHH--------------hcccCc---c--
Confidence 566666666 56999999999999999999999999999877762 23455 442210 0
Q ss_pred hHHhhcceEEEEecCCCCCCHHhHHHHHHHHHHhC-CceEEEecHHHHHHHHHHhHhhhCCCCCcccCCCccccccchhh
Q 009550 405 SREFAKRIFYTVFMGSENSSQETRMLAKKLADEIG-SWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQN 483 (532)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~s~~~~~~~a~~la~~lg-~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N 483 (532)
..+++++|| ++++.+.++|+++|+.+| ++|++|||+++++++.+.+... |..+ ++....+++++|
T Consensus 80 ------~~viav~~p--~~~~~~~~dA~~~a~~lg~i~~~~i~i~~~~~~~~~~l~~~-g~~~-----~~~~~~~~~~~N 145 (285)
T 3dpi_A 80 ------ARFVAMRLP--YGAQHDEADARRALAFVRADETLTVDVKPAADAMLAALAAG-GLAY-----LDHAQQDFVLGN 145 (285)
T ss_dssp ------CEEEEEECC--SCC---CHHHHHHHHHHCCSEEEECCCHHHHHHHHHHHHHT-TCCC-----CCHHHHHHHHHH
T ss_pred ------cEEEEEEcC--CCCHHHHHHHHHHHHHcCCCcEEEEEChHHHHHHHHHHHhc-Cccc-----cccCCCchhhhh
Confidence 037899988 566778899999999999 7999999999999998888753 3321 011236889999
Q ss_pred hhhhhhHHHHHHHhhcCccccCCCCcEEEEcCCCccccccccccccCCC
Q 009550 484 IQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKVFDL 532 (532)
Q Consensus 484 ~qaR~R~~~l~~~a~~~~~~~~~~~~~lvlgT~n~sE~~~Gy~T~ygd~ 532 (532)
+|||+||.+||.+|+.. | +||+||||+||.++||+|||||.
T Consensus 146 iqaR~Rm~~L~~~A~~~-------g-~lVlgTgn~sE~~~Gy~T~~GD~ 186 (285)
T 3dpi_A 146 IKARERMIAQYAVAGAR-------N-GVVIGTDHAAESVMGFFTKFGDG 186 (285)
T ss_dssp HHHHHHHHHHHHHHHHT-------T-EEEBCCCCHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHHHHC-------C-CEEEeCccHHhhhCCcccccCCC
Confidence 99999999999888765 6 69999999999999999999984
No 18
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*
Probab=99.96 E-value=1.9e-28 Score=243.84 Aligned_cols=159 Identities=23% Similarity=0.272 Sum_probs=128.1
Q ss_pred CCcHHHHhcchhhHHHHHHHHhC-CCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCC
Q 009550 325 HSPEEEIAFGPGCWLWDYLRRSG-ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPT 403 (532)
Q Consensus 325 ~~~~~~~~~~~~~~L~~~l~~~~-~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (532)
+++.+++.. +++||++|++++| .++++||||||+|||++|+|+. ++.++ +|.+.+ ..
T Consensus 17 ~~~~~~i~~-~~~~L~~~l~~~g~~~~vvvglSGGvDSsv~a~L~~----~a~~~--------------lg~~~~---~~ 74 (275)
T 1wxi_A 17 INAEEEIRR-SVDFLKSYLQTYPFIKSLVLGISGGQDSTLAGKLCQ----MAINE--------------LRLETG---NE 74 (275)
T ss_dssp CCHHHHHHH-HHHHHHHHHHHSTTCCEEEEECCSSHHHHHHHHHHH----HHHHH--------------HHHHHC---CT
T ss_pred CCHHHHHHH-HHHHHHHHHHHcCCCCCEEEECcCcHHHHHHHHHHH----HHHHH--------------hccccc---cc
Confidence 466677777 6899999999999 9999999999999999888762 22333 221000 00
Q ss_pred ChHHhhcceEEEEecCCCCCCHHhHHHHHHHHHHhCC-ceEEEecHHHHHHHHHHhHhhhCCCCCcccCCCccccccchh
Q 009550 404 DSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGS-WHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQ 482 (532)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~s~~~~~~~a~~la~~lg~-~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (532)
+-++++++|| +.++.+.++|+++|+.||+ +|++|+|+++++++.+.+.. .|. ...+++.+
T Consensus 75 ------~~~v~av~~~--~~~~~~~~dA~~va~~lgi~~~~~i~i~~~~~~~~~~l~~-~g~----------~~~~~~~~ 135 (275)
T 1wxi_A 75 ------SLQFIAVRLP--YGVQADEQDCQDAIAFIQPDRVLTVNIKGAVLASEQALRE-AGI----------ELSDFVRG 135 (275)
T ss_dssp ------TCEEEEEECC--SSSCTTHHHHHHHHHHHCCSEEEECCCHHHHHHHHHHHHH-HTC----------CCCHHHHH
T ss_pred ------cceEEEEEeC--CCCccCHHHHHHHHHHcCCCeEEEEecHHHHHHHHHHHHh-cCC----------CCCCchhh
Confidence 0048999999 3455689999999999999 99999999999999888776 232 24678999
Q ss_pred hhhhhhhHHHHHHHhhcCccccCCCCcEEEEcCCCccccccccccccCCC
Q 009550 483 NIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKVFDL 532 (532)
Q Consensus 483 N~qaR~R~~~l~~~a~~~~~~~~~~~~~lvlgT~n~sE~~~Gy~T~ygd~ 532 (532)
|+|+|+||.++|.+|+.. | ++|+||||++|..+||+|+|||.
T Consensus 136 N~~aR~r~~~l~~~A~~~-------g-~lvlgTgn~~E~~~Gy~t~~gd~ 177 (275)
T 1wxi_A 136 NEKARERMKAQYSIAGMT-------S-GVVVGTDHAAEAITGFFTKYGDG 177 (275)
T ss_dssp HHHHHHHHHHHHHHHHHT-------T-EEEBCCCCHHHHTTTCSCTTTTT
T ss_pred hhhhhHHHHHHHHHHHHC-------C-CEEEECccHHHHccCcccccCCC
Confidence 999999999999888765 5 69999999999999999999984
No 19
>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase, amidotransferase, ATP pyrophosphatase, NAD-adenylate; HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB: 1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A 2pza_A* 2pz8_A
Probab=99.95 E-value=8.5e-28 Score=239.06 Aligned_cols=158 Identities=30% Similarity=0.447 Sum_probs=129.1
Q ss_pred CCcHHHHhcchhhHHHHHHHHhCCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCC
Q 009550 325 HSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTD 404 (532)
Q Consensus 325 ~~~~~~~~~~~~~~L~~~l~~~~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (532)
+++.+++.. +++||++|++++|.++++||||||+|||++|+|+. ++.++ +|.+++ .
T Consensus 16 ~~~~~~i~~-~~~~L~d~v~~~g~~~vvvgLSGGvDSsv~a~La~----~a~~~--------------lg~~~~-----~ 71 (271)
T 1kqp_A 16 IDPKQEIED-RVNFLKQYVKKTGAKGFVLGISGGQDSTLAGRLAQ----LAVES--------------IREEGG-----D 71 (271)
T ss_dssp CCHHHHHHH-HHHHHHHHHHHHTCCEEEEECCSSHHHHHHHHHHH----HHHHH--------------HHHTTC-----C
T ss_pred CCHHHHHHH-HHHHHHHHHHHcCCCCEEEECCCCHHHHHHHHHHH----HHHHH--------------hcccCC-----C
Confidence 456666666 78999999999999999999999999999888872 22233 332100 0
Q ss_pred hHHhhcceEEEEecCCCCCCHHhHHHHHHHHHHhCC-ceEEEecHHHHHHHHHHhHhhhCCCCCcccCCCccccccchhh
Q 009550 405 SREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGS-WHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQN 483 (532)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~s~~~~~~~a~~la~~lg~-~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N 483 (532)
.++++++|| +.++.+.++|+++|+.||+ +|++|+|+++++++.+.+...++.. ..+++.+|
T Consensus 72 ------~~v~av~~~--~~~~~d~~~A~~va~~lgi~~~~~i~i~~~~~~~~~~l~~~~~~~----------~~~~~~~N 133 (271)
T 1kqp_A 72 ------AQFIAVRLP--HGTQQDEDDAQLALKFIKPDKSWKFDIKSTVSAFSDQYQQETGDQ----------LTDFNKGN 133 (271)
T ss_dssp ------CEEEEEECC--SSSCTTHHHHHHHHHHHCCSEEEECCCHHHHHHHHHHHHHHHSCC----------CCHHHHHH
T ss_pred ------ceEEEEEeC--CCCCCCHHHHHHHHHhcCCCeEEEeccHHHHHHHHHHHhhhcCCC----------Ccchhhhh
Confidence 058999999 3345678999999999999 9999999999999988888765432 46889999
Q ss_pred hhhhhhHHHHHHHhhcCccccCCCCcEEEEcCCCccccccccccccCCC
Q 009550 484 IQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKVFDL 532 (532)
Q Consensus 484 ~qaR~R~~~l~~~a~~~~~~~~~~~~~lvlgT~n~sE~~~Gy~T~ygd~ 532 (532)
+|+|+||.++|.+|+.. | ++|+||||++|..+||+|+|||.
T Consensus 134 ~~aR~r~~~l~~~A~~~-------g-~lvl~tgn~~E~~~Gy~t~~gd~ 174 (271)
T 1kqp_A 134 VKARTRMIAQYAIGGQE-------G-LLVLGTDHAAEAVTGFFTKYGDG 174 (271)
T ss_dssp HHHHHHHHHHHHHHHHH-------T-CEEBCCCCHHHHTTTCSCTTTTT
T ss_pred HHHHHHHHHHHHHHHHC-------C-CEEEECccHHHhccCCccccccc
Confidence 99999999999888765 5 69999999999999999999984
No 20
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp}
Probab=99.95 E-value=2.3e-27 Score=232.83 Aligned_cols=151 Identities=30% Similarity=0.364 Sum_probs=128.4
Q ss_pred HHHHhcchhhHHHHHHHHhCCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHH
Q 009550 328 EEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSRE 407 (532)
Q Consensus 328 ~~~~~~~~~~~L~~~l~~~~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (532)
.++.+..++.||++|++++|.++++||||||+||+++|+|+ .++ ++.
T Consensus 9 ~~~~~~~l~~~l~~~v~~~~~~~vvv~lSGGiDSsv~a~l~-------~~~---------------~~~----------- 55 (249)
T 3fiu_A 9 PKEYSQKLVNWLSDSCMNYPAEGFVIGLSGGIDSAVAASLA-------VKT---------------GLP----------- 55 (249)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCSEEEEECCSSHHHHHHHHHH-------HHT---------------TSC-----------
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEecCcHHHHHHHHHH-------HHh---------------CCC-----------
Confidence 35778889999999999999999999999999999998887 233 222
Q ss_pred hhcceEEEEecCCCCCCHHhHHHHHHHHHHhCCceEEEecHHHHHHHHHHhHhhhCCCCCcccCCCccccccchhhhhhh
Q 009550 408 FAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQAR 487 (532)
Q Consensus 408 ~~~~~~~~~~~~~~~s~~~~~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~qaR 487 (532)
.+ +++||+..+++.+.++|+++|+.+|++|+++++++.++++.+.+...++. +....+++.+|+|+|
T Consensus 56 ----~~-av~~~~~~~~~~~~~~a~~~a~~lgi~~~~v~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~Ni~~r 122 (249)
T 3fiu_A 56 ----TT-ALILPSDNNQHQDMQDALELIEMLNIEHYTISIQPAYEAFLASTQSFTNL--------QNNRQLVIKGNAQAR 122 (249)
T ss_dssp ----EE-EEECCCTTSCHHHHHHHHHHHHHHTCEEEECCCHHHHHHHHHHTGGGC--------------CHHHHHHHHHH
T ss_pred ----CE-EEEecCCCCCHHHHHHHHHHHHHhCCCEEEEEChHHHHHHHHHHHhhccC--------CCCcChhHHHHHHHH
Confidence 34 99999877889999999999999999999999999999988777654321 113578999999999
Q ss_pred hhHHHHHHHhhcCccccCCCCcEEEEcCCCccccccccccccCCC
Q 009550 488 IRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKVFDL 532 (532)
Q Consensus 488 ~R~~~l~~~a~~~~~~~~~~~~~lvlgT~n~sE~~~Gy~T~ygd~ 532 (532)
+||.++|.+|+.. | ++|+||||+||.++||+|+|||.
T Consensus 123 ~R~~~l~~~A~~~-------g-~~vl~TGn~sE~~~G~~t~~gd~ 159 (249)
T 3fiu_A 123 LRMMYLYAYAQQY-------N-RIVIGTDNACEWYMGYFTKFGDG 159 (249)
T ss_dssp HHHHHHHHHHHHH-------T-EEEBCCCCHHHHHHTCSCTTTTT
T ss_pred HHHHHHHHHHHHc-------C-CEEEECCCHHHHhcCchhccCCC
Confidence 9999999888766 5 69999999999999999999984
No 21
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0
Probab=99.94 E-value=8.9e-27 Score=228.54 Aligned_cols=145 Identities=28% Similarity=0.355 Sum_probs=126.9
Q ss_pred HHHHhcchhhHHHHHHHHhCCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHH
Q 009550 328 EEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSRE 407 (532)
Q Consensus 328 ~~~~~~~~~~~L~~~l~~~~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (532)
.++++.+++.||+||++++|.++++||||||+||+++|+++ .++ +|.
T Consensus 6 ~~~~~~~l~~~l~d~v~~~g~~~vvv~lSGGiDSsv~a~l~-------~~~--------------~g~------------ 52 (249)
T 3p52_A 6 WQKITEKMCDFIQEKVKNSQSQGVVLGLSGGIDSALVATLC-------KRA--------------LKE------------ 52 (249)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCSEEEEECCSSHHHHHHHHHH-------HHH--------------HTT------------
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHH-------HHH--------------cCC------------
Confidence 47899999999999999999999999999999999999887 344 342
Q ss_pred hhcceEEEEecCCCCCCHHhHHHHHHHHHHhCCceEEEecHHHHHHHHHHhHhhhCCCCCcccCCCccccccchhhhhhh
Q 009550 408 FAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQAR 487 (532)
Q Consensus 408 ~~~~~~~~~~~~~~~s~~~~~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~qaR 487 (532)
++++++||+..+++.+.++|+++|+.+|++|++++|+++++++...+. ...+...+|+|+|
T Consensus 53 ----~v~av~~~~~~~~~~~~~~a~~~a~~lgi~~~~v~i~~~~~~~~~~~~---------------~~~~~~~~n~~~r 113 (249)
T 3p52_A 53 ----NVFALLMPTQISNKANLEDALRLCADLNLEYKIIEIQSILDAFIKQSE---------------NTTLVSLGNFAAR 113 (249)
T ss_dssp ----SEEEEECCSCCSSCHHHHHHHHHHHHHTCEEEECCCHHHHHHHHTTCS---------------CCCHHHHHHHHHH
T ss_pred ----cEEEEEecCCCCCHHHHHHHHHHHHHhCCCEEEEECcHHHHHHHHhcc---------------ccCCccHhHHHHH
Confidence 499999999888889999999999999999999999998887654321 1356789999999
Q ss_pred hhHHHHHHHhhcCccccCCCCcEEEEcCCCccccccccccccCCC
Q 009550 488 IRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKVFDL 532 (532)
Q Consensus 488 ~R~~~l~~~a~~~~~~~~~~~~~lvlgT~n~sE~~~Gy~T~ygd~ 532 (532)
+||.++|.+|+.. | ++|++|||+||.++||+|+|||.
T Consensus 114 ~R~~~l~~~A~~~-------g-~~vl~tgn~se~~~g~~t~~gd~ 150 (249)
T 3p52_A 114 IRMSLLYDYSALK-------N-SLVIGTSNKSELLLGYGTIYGDL 150 (249)
T ss_dssp HHHHHHHHHHHHT-------T-EEEBCCCCHHHHHHTCSCTTTTT
T ss_pred HHHHHHHHHHHHC-------C-CeEEeCCCHHHHHccchhhhccc
Confidence 9999999888765 6 69999999999999999999995
No 22
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A
Probab=99.90 E-value=9.7e-24 Score=209.82 Aligned_cols=144 Identities=26% Similarity=0.241 Sum_probs=125.0
Q ss_pred HHHhcchhhHHHHHHHHhCCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHh
Q 009550 329 EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREF 408 (532)
Q Consensus 329 ~~~~~~~~~~L~~~l~~~~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (532)
++++..++.+|++|+++++.++++|+||||+||+++++++ .++ .+ .
T Consensus 6 ~~~~~~l~~~l~~~v~~~~~~~vvv~lSGGiDSsv~~~l~-------~~~--------------~~-~------------ 51 (268)
T 1xng_A 6 QKLIVYLCDFLEKEVQKRGFKKVVYGLSGGLDSAVVGVLC-------QKV--------------FK-E------------ 51 (268)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEECCSSHHHHHHHHHH-------HHH--------------HG-G------------
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEccCcHHHHHHHHHH-------HHh--------------CC-C------------
Confidence 6788889999999999999999999999999999998887 344 21 1
Q ss_pred hcceEEEEecCCCCCCHHhHHHHHHHHHHhCCceEEEecHHHHHHHHHHhHhhhCCCCCcccCCCccccccchhhhhhhh
Q 009550 409 AKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARI 488 (532)
Q Consensus 409 ~~~~~~~~~~~~~~s~~~~~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~qaR~ 488 (532)
+|++++||+..+++.+.++|+++|+.+|++|++++|++.++++...+.. ..+++.+|+|+|+
T Consensus 52 ---~v~av~~~~~~~~~~e~~~a~~~a~~lgi~~~~i~i~~~~~~~~~~~~~---------------~~~~~~~n~~~r~ 113 (268)
T 1xng_A 52 ---NAHALLMPSSVSMPENKTDALNLCEKFSIPYTEYSIAPYDAIFSSHFKD---------------ASLTRKGNFCARL 113 (268)
T ss_dssp ---GEEEEECCCSSSCHHHHHHHHHHHHHHTCCEEECCCHHHHHHHHHHCTT---------------CCHHHHHHHHHHH
T ss_pred ---CEEEEEeCCCCCCHHHHHHHHHHHHHcCCCEEEEeChHHHHHHHHHhhh---------------cCCchHHHHHHHH
Confidence 4899999988888999999999999999999999999988776554332 1467899999999
Q ss_pred hHHHHHHHhhcCccccCCCCcEEEEcCCCccccccccccccCCC
Q 009550 489 RMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKVFDL 532 (532)
Q Consensus 489 R~~~l~~~a~~~~~~~~~~~~~lvlgT~n~sE~~~Gy~T~ygd~ 532 (532)
|+.++|.+|+.. | ++|++|||++|.++||+|+|||.
T Consensus 114 R~~~l~~~A~~~-------g-~~vl~tg~~~E~~~Gy~t~~gd~ 149 (268)
T 1xng_A 114 RMAFLYDYSLKS-------D-SLVIGTSNKSERMLGYGTLFGDL 149 (268)
T ss_dssp HHHHHHHHHHHH-------T-CEEBCCCCHHHHHHTCSCTTTTT
T ss_pred HHHHHHHHHHHC-------C-CEEEECCcHHHHhcCcccccCCC
Confidence 999999888755 6 59999999999999999999983
No 23
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii}
Probab=99.87 E-value=2.7e-22 Score=198.17 Aligned_cols=140 Identities=29% Similarity=0.406 Sum_probs=117.7
Q ss_pred HHHhcchhhHHHHHHHHhCCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHh
Q 009550 329 EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREF 408 (532)
Q Consensus 329 ~~~~~~~~~~L~~~l~~~~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (532)
+++...+..+|++| +.++++|+||||+||+++|+++ .++ .+..
T Consensus 7 ~~~~~~l~~~i~~~----~~~~vvv~lSGGiDSs~~~~l~-------~~~--------------~g~~------------ 49 (257)
T 2e18_A 7 DKVIERILEFIREK----GNNGVVIGISGGVDSATVAYLA-------TKA--------------LGKE------------ 49 (257)
T ss_dssp HHHHHHHHHHHHHH----CTTCEEEECCSSHHHHHHHHHH-------HHH--------------HCGG------------
T ss_pred HHHHHHHHHHHHHh----CCCcEEEEecCCHHHHHHHHHH-------HHh--------------cCCC------------
Confidence 67788888999998 7789999999999999998887 344 3312
Q ss_pred hcceEEEEecCCCCCCHHhHHHHHHHHHHhCCceEEEecHHHHHHHHHHhHhhhCCCCCcccCCCccccccchhhhhhhh
Q 009550 409 AKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARI 488 (532)
Q Consensus 409 ~~~~~~~~~~~~~~s~~~~~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~qaR~ 488 (532)
+|++++||... + .+.++|+++|+.+|++|++++|++.++++...+... ..+++.+|+|+|+
T Consensus 50 ---~v~av~~~~~~-~-~~~~~a~~~a~~lgi~~~~i~i~~~~~~~~~~l~~~--------------~~~~~~~n~~ar~ 110 (257)
T 2e18_A 50 ---KVLGLIMPYFE-N-KDVEDAKLVAEKLGIGYKVINIKPIVDSFVENLELN--------------LDRKGLGNIMSRT 110 (257)
T ss_dssp ---GEEEEECCSSC-S-THHHHHHHHHHHHTCEEEECCCHHHHHHHHHHHCSC--------------CCHHHHHHHHHHH
T ss_pred ---cEEEEEeCCCC-c-hHHHHHHHHHHHhCCCEEEEEChHHHHHHHHHhccc--------------cccchhHHHHHHH
Confidence 48999999864 4 888999999999999999999999887776554321 2568899999999
Q ss_pred hHHHHHHHhhcCccccCCCCcEEEEcCCCccccccccccccCCC
Q 009550 489 RMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKVFDL 532 (532)
Q Consensus 489 R~~~l~~~a~~~~~~~~~~~~~lvlgT~n~sE~~~Gy~T~ygd~ 532 (532)
||.++|.+|+.. | ++|++|||.+|..+||+|+|||.
T Consensus 111 r~~~l~~~A~~~-------g-~~vl~tg~~~e~~~Gy~t~~g~~ 146 (257)
T 2e18_A 111 RMIMLYAHANSL-------G-RIVLGTSNRSEFLTGYFTKWGDG 146 (257)
T ss_dssp HHHHHHHHHHHH-------T-CEEECCCCHHHHHHTCSCTTSTT
T ss_pred HHHHHHHHHHHc-------C-CEEEEcCchhHHhcCCeeccCCC
Confidence 999999888655 6 59999999999999999999973
No 24
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=99.23 E-value=7.3e-12 Score=138.91 Aligned_cols=150 Identities=10% Similarity=0.025 Sum_probs=100.9
Q ss_pred HHHHhcchhhHHHHHHHHhCCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHH
Q 009550 328 EEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSRE 407 (532)
Q Consensus 328 ~~~~~~~~~~~L~~~l~~~~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (532)
.+++...+..+|++|+. .++++++||||+||+++|+|+ .++ +|.+
T Consensus 223 ~~~~~~~~i~~Ir~~v~---~~~vvv~lSGGvDSsVla~Ll-------~~a--------------lG~~----------- 267 (697)
T 2vxo_A 223 VQNRELECIREIKERVG---TSKVLVLLSGGVDSTVCTALL-------NRA--------------LNQE----------- 267 (697)
T ss_dssp HHHHHHHHHHHHHHHHT---TCEEEEECCSSHHHHHHHHHH-------HHH--------------SCGG-----------
T ss_pred hhHHHHHHHHHHHHHhc---ccceEEEccCchHHHHHHHHH-------HHh--------------cCCc-----------
Confidence 35677778889999984 379999999999999999998 355 4422
Q ss_pred hhcceEEEEecCCCCCCHHhHHHHHHHHHHhCCceEEEecHHHHHHHHHHhHhhhCCCCCcccCCCccccccchhhhhhh
Q 009550 408 FAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQAR 487 (532)
Q Consensus 408 ~~~~~~~~~~~~~~~s~~~~~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~qaR 487 (532)
+|++++|+...+++.+.++|+++|+.+|++|+++++++.+......+... .....+...-..+...++.+|+|.|
T Consensus 268 ----~V~aV~vd~g~~~~~e~e~a~~~a~~lGI~~~vvdi~~~f~~~~~~l~~~-~~~~~Y~~g~~~~l~~v~~~~~kR~ 342 (697)
T 2vxo_A 268 ----QVIAVHIDNGFMRKRESQSVEEALKKLGIQVKVINAAHSFYNGTTTLPIS-DEDRTPRKRISKTLNMTTSPEEKRK 342 (697)
T ss_dssp ----GEEEEEEECSCCCSSTTHHHHHHHHHTTCCEEEEECHHHHHTCCCBCC-----------CBCCCGGGCCCHHHHHH
T ss_pred ----eEEEEEeccccCCcchHHHHHHHHHHhCCcEEEecchHHHHhhhhhhccc-ccccchhcccCcCcccccCHHHHHh
Confidence 49999999887777788999999999999999999987654421100000 0000000000112456778899988
Q ss_pred hhHHHHHHHhhcCccccCCCCc---EEEEcCCCccc
Q 009550 488 IRMVLAFMLASLLPWVHNKPGF---YLVLGSSNVDE 520 (532)
Q Consensus 488 ~R~~~l~~~a~~~~~~~~~~~~---~lvlgT~n~sE 520 (532)
+|+.+++.++. ..+++.|. .++|+||+..+
T Consensus 343 iig~~~~~v~~---~~A~~~g~~~~~~~LatG~~~~ 375 (697)
T 2vxo_A 343 IIGDTFVKIAN---EVIGEMNLKPEEVFLAQGTLRP 375 (697)
T ss_dssp HHHHHHHHHHH---HHHHHTCCCTTSEEEECCCSSC
T ss_pred HHHHHHHHHHH---HHHHHcCCCcccEEEEEeccCh
Confidence 88877765542 23333341 26888888765
No 25
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=98.91 E-value=3.7e-09 Score=114.28 Aligned_cols=83 Identities=20% Similarity=0.241 Sum_probs=65.6
Q ss_pred HHHhcchhhHHHHHHHHhCCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHh
Q 009550 329 EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREF 408 (532)
Q Consensus 329 ~~~~~~~~~~L~~~l~~~~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (532)
+++...+..+|++++.+ ++++++||||+||+++|+++ .++ +|.
T Consensus 211 ~~~~~~~~~~ir~~v~~---~~vvvalSGGvDSsv~a~ll-------~~a--------------~G~------------- 253 (525)
T 1gpm_A 211 AKIIDDAVARIREQVGD---DKVILGLSGGVDSSVTAMLL-------HRA--------------IGK------------- 253 (525)
T ss_dssp HHHHHHHHHHHHHHHTT---CEEEEECCSSHHHHHHHHHH-------HHH--------------HGG-------------
T ss_pred HHHHHhhhhhhhhhhcc---cceEEEecCCCCHHHHHHHH-------HHH--------------hCC-------------
Confidence 45666677788888743 69999999999999988887 344 342
Q ss_pred hcceEEEEecCCCCCCHHhHHHHHH-HHHHhCCceEEEecHHHH
Q 009550 409 AKRIFYTVFMGSENSSQETRMLAKK-LADEIGSWHLDVSIDTVV 451 (532)
Q Consensus 409 ~~~~~~~~~~~~~~s~~~~~~~a~~-la~~lg~~~~~i~i~~~~ 451 (532)
++++++++....++.+.+++.+ +|+.+|++|+++++++.+
T Consensus 254 ---~v~av~v~~g~~~~~e~~~~~~~la~~lgi~~~~v~~~~~f 294 (525)
T 1gpm_A 254 ---NLTCVFVDNGLLRLNEAEQVLDMFGDHFGLNIVHVPAEDRF 294 (525)
T ss_dssp ---GEEEEEEECSCSCTTHHHHHHHHHTTTTCCCEEEEECHHHH
T ss_pred ---CEEEEEEeCCCCCchHHHHHHHHHHHHhCCcEEEEeccHHH
Confidence 4899999987666666777766 899999999999998743
No 26
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=98.82 E-value=1.7e-08 Score=101.65 Aligned_cols=123 Identities=23% Similarity=0.263 Sum_probs=81.4
Q ss_pred HHHhcchhhHHHHHHHHhCCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHh
Q 009550 329 EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREF 408 (532)
Q Consensus 329 ~~~~~~~~~~L~~~l~~~~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (532)
+.+......+|++++. .+++++++|||+||+++|.++ .++ +|.
T Consensus 4 ~~~~~~~~~~ir~~v~---~~kvlvalSGGvDSsvla~ll-------~~~--------------~g~------------- 46 (308)
T 2dpl_A 4 GRFVEEKVREIRETVG---DSKAIIALSGGVDSSTAAVLA-------HKA--------------IGD------------- 46 (308)
T ss_dssp HHHHHHHHHHHHHHHT---TSCEEEECCSSHHHHHHHHHH-------HHH--------------HGG-------------
T ss_pred HHHHHHHHHHHHHHhC---CCCEEEEEeChHHHHHHHHHH-------HHh--------------hCC-------------
Confidence 4556667788888885 368999999999999988887 233 342
Q ss_pred hcceEEEEecCCCCCCHHhHHHHHH-HHHHhCCceEEEecHHHHHHHHHHhHhhhCCCCCcccCCCccccccchhhhhhh
Q 009550 409 AKRIFYTVFMGSENSSQETRMLAKK-LADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQAR 487 (532)
Q Consensus 409 ~~~~~~~~~~~~~~s~~~~~~~a~~-la~~lg~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~qaR 487 (532)
.++++++.....+..+.+.+.+ +|+.+|++|+.+++++.+ .+.+... . +.+ ...++..|
T Consensus 47 ---~v~av~vd~g~~~~~e~~~~~~~~a~~lgi~~~vv~~~~~f---~~~l~~~---~---------~pe--~~~~~~~~ 106 (308)
T 2dpl_A 47 ---RLHAVFVNTGFLRKGEPEFVVKTFRDEFGMNLHYVDAQDRF---FSALKGV---T---------DPE--EKRKIIGR 106 (308)
T ss_dssp ---GEEEEEEECSCCCTTHHHHHHHHHTTTTCCEEEEEECHHHH---HHHTTTC---C---------CHH--HHHHHHHH
T ss_pred ---CEEEEEEcCCCCChHHHHHHHHHHHHHcCCcEEEEECCHHH---HHhhhCC---C---------CHH--HHHHHHHH
Confidence 4889999876544455666777 667899999999998643 2222211 0 111 12345566
Q ss_pred hhHHHHHHHhhcCccccCCCC-cEEEEcC
Q 009550 488 IRMVLAFMLASLLPWVHNKPG-FYLVLGS 515 (532)
Q Consensus 488 ~R~~~l~~~a~~~~~~~~~~~-~~lvlgT 515 (532)
.|..+++..|+.+ | ..++.|+
T Consensus 107 ~~~~~l~~~A~~~-------g~~~la~Gh 128 (308)
T 2dpl_A 107 VFIEVFEEVAKKI-------GAEYLIQGT 128 (308)
T ss_dssp HHHHHHHHHHHHH-------TCSEEECCC
T ss_pred HHHHHHHHHHHHc-------CcCEEEECC
Confidence 7777777666543 2 1466665
No 27
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=98.71 E-value=2.7e-08 Score=102.88 Aligned_cols=72 Identities=24% Similarity=0.290 Sum_probs=56.3
Q ss_pred HHHHhCCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCC
Q 009550 342 YLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSE 421 (532)
Q Consensus 342 ~l~~~~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (532)
+|++...+++++++|||+||+++|.++. . .+. .|++++|...
T Consensus 3 ~~~~~~~~kVlVa~SGGvDSsv~a~lL~--------~--------------~G~----------------~V~~v~~~~~ 44 (376)
T 2hma_A 3 AMSDNSKTRVVVGMSGGVDSSVTALLLK--------E--------------QGY----------------DVIGIFMKNW 44 (376)
T ss_dssp --CCGGGSEEEEECCSSHHHHHHHHHHH--------H--------------TTC----------------EEEEEEEECC
T ss_pred hhhhCCCCeEEEEEeCHHHHHHHHHHHH--------H--------------cCC----------------cEEEEEEECC
Confidence 3545555799999999999999888872 2 343 4899999754
Q ss_pred C--------CCHHhHHHHHHHHHHhCCceEEEecHHHH
Q 009550 422 N--------SSQETRMLAKKLADEIGSWHLDVSIDTVV 451 (532)
Q Consensus 422 ~--------s~~~~~~~a~~la~~lg~~~~~i~i~~~~ 451 (532)
. ++..+.++|+++|+.+|++|+++++++.+
T Consensus 45 ~~~~~~~~c~~~~d~~~a~~va~~lGIp~~vv~~~~~~ 82 (376)
T 2hma_A 45 DDTDENGVCTATEDYKDVVAVADQIGIPYYSVNFEKEY 82 (376)
T ss_dssp CCCC----CHHHHHHHHHHHHHHHHTCCEEEEECHHHH
T ss_pred CcccccccCCCHHHHHHHHHHHHHhCCcEEEEeChHHH
Confidence 2 35678899999999999999999998755
No 28
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=98.67 E-value=6.4e-08 Score=93.38 Aligned_cols=65 Identities=15% Similarity=0.179 Sum_probs=52.3
Q ss_pred CCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHH
Q 009550 347 GASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQE 426 (532)
Q Consensus 347 ~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 426 (532)
|++++++++|||+||++++.++. + .+. .|+++++.....+..
T Consensus 1 ~~~kvvv~lSGG~DS~~~l~ll~-------~---------------~~~----------------~v~av~~~~g~~~~~ 42 (232)
T 2pg3_A 1 GMKRAVVVFSGGQDSTTCLIQAL-------Q---------------DYD----------------DVHCITFDYGQRHRA 42 (232)
T ss_dssp -CCEEEEECCSSHHHHHHHHHHH-------H---------------HCS----------------EEEEEEEESSSSCHH
T ss_pred CCCCEEEEecCcHHHHHHHHHHH-------H---------------cCC----------------CEEEEEEECCCCCHH
Confidence 46789999999999999888772 2 221 488898876555567
Q ss_pred hHHHHHHHHHHhCCc-eEEEecHH
Q 009550 427 TRMLAKKLADEIGSW-HLDVSIDT 449 (532)
Q Consensus 427 ~~~~a~~la~~lg~~-~~~i~i~~ 449 (532)
+.+.|+++|+.+|++ |++++++.
T Consensus 43 e~~~a~~~a~~lgi~~~~vi~~~~ 66 (232)
T 2pg3_A 43 EIEVAQELSQKLGAAAHKVLDVGL 66 (232)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECTH
T ss_pred HHHHHHHHHHHhCCCceEEEeChh
Confidence 788999999999999 99999974
No 29
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=98.65 E-value=2.5e-08 Score=95.01 Aligned_cols=63 Identities=19% Similarity=0.163 Sum_probs=51.2
Q ss_pred CeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHHhH
Q 009550 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (532)
Q Consensus 349 ~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 428 (532)
+++++++|||+||++++.++. + .+. .++++++.....+..+.
T Consensus 4 ~~v~v~lSGG~DS~~ll~ll~-------~---------------~~~----------------~v~~~~~~~~~~~~~e~ 45 (219)
T 3bl5_A 4 EKAIVVFSGGQDSTTCLLWAL-------K---------------EFE----------------EVETVTFHYNQRHSQEV 45 (219)
T ss_dssp CEEEEECCSSHHHHHHHHHHH-------H---------------HCS----------------EEEEEEEESSCTTCHHH
T ss_pred CCEEEEccCcHHHHHHHHHHH-------H---------------cCC----------------ceEEEEEeCCCCCHHHH
Confidence 589999999999999888772 2 221 48888887655445678
Q ss_pred HHHHHHHHHhCCceEEEecHH
Q 009550 429 MLAKKLADEIGSWHLDVSIDT 449 (532)
Q Consensus 429 ~~a~~la~~lg~~~~~i~i~~ 449 (532)
+.|+++|+.+|++|+++++++
T Consensus 46 ~~a~~~a~~lgi~~~~~~~~~ 66 (219)
T 3bl5_A 46 EVAKSIAEKLGVKNHLLDMSL 66 (219)
T ss_dssp HHHHHHHHTTCCCEEEEECGG
T ss_pred HHHHHHHHHhCCCeEEEeChH
Confidence 899999999999999999976
No 30
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=98.63 E-value=1.9e-07 Score=100.35 Aligned_cols=82 Identities=22% Similarity=0.170 Sum_probs=65.5
Q ss_pred HHHhcchhhHHHHHHHHhCCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHh
Q 009550 329 EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREF 408 (532)
Q Consensus 329 ~~~~~~~~~~L~~~l~~~~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (532)
+.+......+|++++. .+++++++|||+||+++|.++. + .| .
T Consensus 193 ~~~~~~~i~~ir~~~~---~~kvvvalSGGvDSsvla~ll~-------~---------------~g-~------------ 234 (503)
T 2ywb_A 193 EHVLEELLREVRERAG---KDRVLLAVSGGVDSSTLALLLA-------K---------------AG-V------------ 234 (503)
T ss_dssp HHHHHHHHHHHHHHHT---TSEEEEEECSSHHHHHHHHHHH-------H---------------HT-C------------
T ss_pred hhhhHHHHHhhhhhcc---CccEEEEecCCcchHHHHHHHH-------H---------------cC-C------------
Confidence 4555556678888773 3799999999999999888872 2 23 2
Q ss_pred hcceEEEEecCCCCCCHHhHHHHHHHHHHhCCceEEEecHHHH
Q 009550 409 AKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVV 451 (532)
Q Consensus 409 ~~~~~~~~~~~~~~s~~~~~~~a~~la~~lg~~~~~i~i~~~~ 451 (532)
++++++++....++.+.+.++++|+.+|++|+.+++++.+
T Consensus 235 ---~v~av~vd~g~~~~~e~~~v~~~~~~lgi~~~vv~~~~~f 274 (503)
T 2ywb_A 235 ---DHLAVFVDHGLLRLGEREEVEGALRALGVNLLVVDAKERF 274 (503)
T ss_dssp ---EEEEEEEECSCSCTTHHHHHHHHHHHTTCCEEEEECHHHH
T ss_pred ---eEEEEEEeCCCCChHHHHHHHHHHHHhCCCEEEEECcHHH
Confidence 5899999977666778899999999999999999998643
No 31
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=98.54 E-value=3e-07 Score=99.82 Aligned_cols=75 Identities=15% Similarity=0.149 Sum_probs=57.6
Q ss_pred HHHHHhC-CCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecC
Q 009550 341 DYLRRSG-ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMG 419 (532)
Q Consensus 341 ~~l~~~~-~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (532)
+++++.| .++++++||||+||+++|+|+ .++ +|. ++++++|+
T Consensus 247 ~~ir~~g~~~~vvvalSGGvDSsv~a~ll-------~~~--------------~G~----------------~v~~v~vd 289 (556)
T 3uow_A 247 KNIEKYKHDHYVIAAMSGGIDSTVAAAYT-------HKI--------------FKE----------------RFFGIFID 289 (556)
T ss_dssp HHHGGGTTTCEEEEECCSSHHHHHHHHHH-------HHH--------------HGG----------------GEEEEEEE
T ss_pred eeeeecCCCceEEEEcccCCCHHHHHHHH-------HHH--------------hCC----------------eEEEEEEe
Confidence 4444446 689999999999999999888 355 452 48999999
Q ss_pred CCCCCHHhHHHH-HHHHHHh-CCceEEEecHHHHH
Q 009550 420 SENSSQETRMLA-KKLADEI-GSWHLDVSIDTVVS 452 (532)
Q Consensus 420 ~~~s~~~~~~~a-~~la~~l-g~~~~~i~i~~~~~ 452 (532)
+...+..+.+.+ +.+|+.+ |++|+++++++.+.
T Consensus 290 ~g~~~~~e~~~~~~~~~~~l~gi~~~~vd~~~~f~ 324 (556)
T 3uow_A 290 NGLLRKNEAENVYTFLKSTFPDMNITKIDASENFL 324 (556)
T ss_dssp CSCSCTTHHHHHHHHHHHHCTTSEEEEEECHHHHH
T ss_pred cCCCChHHHHHHHHHHHHhcCCCCeEEeccHHHHH
Confidence 765554455555 6699999 99999999987553
No 32
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=98.50 E-value=3.1e-07 Score=94.97 Aligned_cols=66 Identities=23% Similarity=0.253 Sum_probs=53.4
Q ss_pred CCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCC-----
Q 009550 348 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSEN----- 422 (532)
Q Consensus 348 ~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 422 (532)
.+++++++|||+||+++|.++. . .+. .|++++|....
T Consensus 17 ~~kVvVa~SGGvDSsv~a~lL~--------~--------------~G~----------------~V~~v~~~~~~~~~~~ 58 (380)
T 2der_A 17 AKKVIVGMSGGVDSSVSAWLLQ--------Q--------------QGY----------------QVEGLFMKNWEEDDGE 58 (380)
T ss_dssp CCEEEEECCSCSTTHHHHHHHH--------T--------------TCC----------------EEEEEEEECCCCCSHH
T ss_pred CCEEEEEEEChHHHHHHHHHHH--------H--------------cCC----------------eEEEEEEEcCcccccc
Confidence 3689999999999999888872 2 343 48999997432
Q ss_pred ---CCHHhHHHHHHHHHHhCCceEEEecHHHH
Q 009550 423 ---SSQETRMLAKKLADEIGSWHLDVSIDTVV 451 (532)
Q Consensus 423 ---s~~~~~~~a~~la~~lg~~~~~i~i~~~~ 451 (532)
++..+.++|+++|+.||++|+++++++.+
T Consensus 59 ~~~~s~~d~~~a~~va~~LGIp~~vvd~~~~f 90 (380)
T 2der_A 59 EYCTAAADLADAQAVCDKLGIELHTVNFAAEY 90 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCEEEEECHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCcEEEEeCcHHH
Confidence 24677899999999999999999998755
No 33
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*
Probab=98.46 E-value=3.4e-07 Score=98.32 Aligned_cols=136 Identities=20% Similarity=0.161 Sum_probs=81.5
Q ss_pred HHHhcchhhHHHHHHHHh--CCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChH
Q 009550 329 EEIAFGPGCWLWDYLRRS--GASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSR 406 (532)
Q Consensus 329 ~~~~~~~~~~L~~~l~~~--~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (532)
++....+...|.+-+++. .-..+.+.||||+||+++|+++. + .+.
T Consensus 217 ~~~~~~l~~~L~~aV~~rl~sd~~v~v~LSGGlDSs~vaala~-------~---------------~~~----------- 263 (503)
T 1q15_A 217 EPLLALIDRYLNAPLEDLAPRFDTVGIPLSGGLDSSLVTALAS-------R---------------HFK----------- 263 (503)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGCSEEEEECCSSHHHHHHHHHHT-------T---------------TCS-----------
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcEEEECCCCHHHHHHHHHHH-------H---------------hCC-----------
Confidence 444444445555555542 22579999999999999988872 1 121
Q ss_pred HhhcceEEEEecCCCCCCHHhHHHHHHHHHHhCCceEEEecHH--HHHHHHHHhHhhhCCCCCcccCCCccccccchhhh
Q 009550 407 EFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDT--VVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNI 484 (532)
Q Consensus 407 ~~~~~~~~~~~~~~~~s~~~~~~~a~~la~~lg~~~~~i~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~ 484 (532)
.+.++++.... ..+...|+++|+.+|++|+++++++ +.+.+.+.+... . .| +..+..|.
T Consensus 264 -----~~~~~t~~~~~--~~E~~~A~~vA~~lg~~h~~i~~~~~~~~~~l~~~~~~~-~-~~----------~p~~~~~~ 324 (503)
T 1q15_A 264 -----KLNTYSIGTEL--SNEFEFSQQVADALGTHHQMKILSETEVINGIIESIYYN-E-IF----------DGLSAEIQ 324 (503)
T ss_dssp -----EEEEEEEEETT--BCCHHHHHHHHHHHTCEEEEEEECHHHHHHHHHHHHHHH-C-CC----------CHHHHHHH
T ss_pred -----CcEEEEEeCCC--ccHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHHHHHh-c-CC----------CcccchhH
Confidence 25555554332 2567889999999999999999986 333333332221 1 11 12334443
Q ss_pred hhhhhHHHHHHHhhcCccccCCCCcEEEEcCCC-cccccccccccc
Q 009550 485 QARIRMVLAFMLASLLPWVHNKPGFYLVLGSSN-VDEGLRGYLTKV 529 (532)
Q Consensus 485 qaR~R~~~l~~~a~~~~~~~~~~~~~lvlgT~n-~sE~~~Gy~T~y 529 (532)
+.+-.++..| +.| .-|+.||+ .+|...||. +|
T Consensus 325 ---~~~~~l~~~a--------~~~-~~VvltG~GaDElf~GY~-~~ 357 (503)
T 1q15_A 325 ---SGLFNVYRQA--------QGQ-VSCMLTGYGSDLLFGGIL-KP 357 (503)
T ss_dssp ---HHHHHHHHHH--------BTT-BSEEECCTTHHHHHTTTS-CT
T ss_pred ---HHHHHHHHHH--------HCC-CCEEEeCCChhhhccChH-HH
Confidence 3333333333 224 46777888 689999996 44
No 34
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=98.42 E-value=2.4e-07 Score=100.11 Aligned_cols=82 Identities=18% Similarity=0.164 Sum_probs=60.0
Q ss_pred HHhcchhhHHHHHHHHhCCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhh
Q 009550 330 EIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFA 409 (532)
Q Consensus 330 ~~~~~~~~~L~~~l~~~~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (532)
.+.......|++++. .+++++++|||+||+++|.++ .++ +|.
T Consensus 215 ~~~~~~i~~i~~~v~---~~kvlvalSGGvDSsvla~ll-------~~~--------------~G~-------------- 256 (527)
T 3tqi_A 215 HIIEDSIRDIQEKVG---KEQVIVGLSGGVDSAVTATLV-------HKA--------------IGD-------------- 256 (527)
T ss_dssp HHHHHHHHHHHHHHT---TSCEEEECTTTHHHHHHHHHH-------HHH--------------HGG--------------
T ss_pred HHHHHHHHHHHHhcC---CCeEEEEEecCcCHHHHHHHH-------HHH--------------hCC--------------
Confidence 344444456666654 378999999999999988887 344 342
Q ss_pred cceEEEEecCCCCCCHHhHHHHHH-HHHHhCCceEEEecHHHH
Q 009550 410 KRIFYTVFMGSENSSQETRMLAKK-LADEIGSWHLDVSIDTVV 451 (532)
Q Consensus 410 ~~~~~~~~~~~~~s~~~~~~~a~~-la~~lg~~~~~i~i~~~~ 451 (532)
+++++++.....+..+.+.+.+ +|+.+|++|+.+++++.+
T Consensus 257 --~v~av~vd~g~~~~~e~~~~~~~~a~~lgi~~~vv~~~~~~ 297 (527)
T 3tqi_A 257 --QLVCVLVDTGLLRLNEVDEVLNVFQKHLGAKVICVDAKDRF 297 (527)
T ss_dssp --GEEEEEECCSCSCTTHHHHHHHHHTTSSCCEEEEECCHHHH
T ss_pred --eEEEEEeccCCCChhHHHHHHHHHHHHcCCcEEEEeChHHH
Confidence 4899999865555555556655 999999999999997644
No 35
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*
Probab=98.41 E-value=1.1e-06 Score=94.52 Aligned_cols=135 Identities=20% Similarity=0.131 Sum_probs=82.3
Q ss_pred HHHHhcchhhHHHHHHHHhC--CCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCCh
Q 009550 328 EEEIAFGPGCWLWDYLRRSG--ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDS 405 (532)
Q Consensus 328 ~~~~~~~~~~~L~~~l~~~~--~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (532)
.++....+...|.+-+++.- -..+.+.||||+||+++|+++. +. . .
T Consensus 219 ~~~~~~~l~~~L~~aV~~rl~sd~~vgv~LSGGlDSS~vaala~-------~~--------------~-~---------- 266 (513)
T 1jgt_A 219 EGEAVAAVRAALEKAVAQRVTPGDTPLVVLSGGIDSSGVAACAH-------RA--------------A-G---------- 266 (513)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTCCCEEECCSSHHHHHHHHHHH-------HH--------------H-S----------
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcEEEECCCcHHHHHHHHHHH-------Hh--------------C-C----------
Confidence 45555566667777777632 2579999999999999999883 22 1 1
Q ss_pred HHhhcceEEEEecCCCCCCHHhHHHHHHHHHHhCCceEEEecHH--HHHHHHHHhHhhhCCCCCcccCCCccccccchhh
Q 009550 406 REFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDT--VVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQN 483 (532)
Q Consensus 406 ~~~~~~~~~~~~~~~~~s~~~~~~~a~~la~~lg~~~~~i~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N 483 (532)
.+.++++.... ..+...|+++|+.+|++|+++++++ ..+.+...+... . .+ +..+..|
T Consensus 267 ------~v~tfti~~~~--~~E~~~A~~vA~~lg~~h~~i~i~~~~~~~~l~~~~~~~-~-~~----------~p~~~~~ 326 (513)
T 1jgt_A 267 ------ELDTVSMGTDT--SNEFREARAVVDHLRTRHREITIPTTELLAQLPYAVWAS-E-SV----------DPDIIEY 326 (513)
T ss_dssp ------SCEEEEEECSS--CCCHHHHHHHHHHHTCEEEEEECCHHHHHTTHHHHHHHH-C-CC----------CHHHHHH
T ss_pred ------CceEEEcCCCC--CCHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHHHh-C-CC----------Ccccchh
Confidence 13444443322 3567889999999999999999976 333333322211 1 10 1223333
Q ss_pred hhhhhhHHHHHHHhhcCccccCCCCcEEEEcCCC-ccccccccc
Q 009550 484 IQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSN-VDEGLRGYL 526 (532)
Q Consensus 484 ~qaR~R~~~l~~~a~~~~~~~~~~~~~lvlgT~n-~sE~~~Gy~ 526 (532)
.-+ +|.+++. + +.| .-|+.||+ .+|...||.
T Consensus 327 ~~~------~~~l~~~----a-~~g-~~VvltG~GaDElfgGY~ 358 (513)
T 1jgt_A 327 LLP------LTALYRA----L-DGP-ERRILTGYGADIPLGGMH 358 (513)
T ss_dssp HHH------HHHHHHH----C-CSS-CCEEECCTTTHHHHTTTC
T ss_pred HHH------HHHHHHH----H-HcC-CCEEEeCCChhhcccCcc
Confidence 322 2433332 1 234 46777888 699999997
No 36
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=98.37 E-value=1.1e-06 Score=91.40 Aligned_cols=64 Identities=16% Similarity=0.128 Sum_probs=51.3
Q ss_pred CeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHHhH
Q 009550 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (532)
Q Consensus 349 ~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 428 (532)
++++|++|||+||++++.++ .++ .+. .|+++++.... ..+.
T Consensus 1 ~kVvva~SGG~DSsvll~ll-------~~~--------------~g~----------------~V~av~vd~g~--~~e~ 41 (400)
T 1kor_A 1 MKIVLAYSGGLDTSIILKWL-------KET--------------YRA----------------EVIAFTADIGQ--GEEV 41 (400)
T ss_dssp CEEEEECCSSHHHHHHHHHH-------HHH--------------HTC----------------EEEEEEEESSC--SSCH
T ss_pred CcEEEEEeChHHHHHHHHHH-------HHh--------------hCC----------------cEEEEEEeCCC--HHHH
Confidence 47999999999999987776 233 343 48899988654 5678
Q ss_pred HHHHHHHHHhCC-ceEEEecHHHH
Q 009550 429 MLAKKLADEIGS-WHLDVSIDTVV 451 (532)
Q Consensus 429 ~~a~~la~~lg~-~~~~i~i~~~~ 451 (532)
+.++++|+.+|+ +++++++++.+
T Consensus 42 e~a~~~A~~lGi~~~~vvd~~~ef 65 (400)
T 1kor_A 42 EEAREKALRTGASKAIALDLKEEF 65 (400)
T ss_dssp HHHHHHHHHHTCSEEEEEECHHHH
T ss_pred HHHHHHHHHhCCCeEEEEeCcHHH
Confidence 899999999999 79999998644
No 37
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=98.36 E-value=1.4e-06 Score=91.22 Aligned_cols=67 Identities=25% Similarity=0.211 Sum_probs=54.7
Q ss_pred CeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCC-CCCHHh
Q 009550 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSE-NSSQET 427 (532)
Q Consensus 349 ~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~ 427 (532)
+++++++|||+||++++.++. + .|. .++++++... +.++.+
T Consensus 188 ~kvlvalSGGvDS~vll~ll~-------~---------------~G~----------------~v~av~v~~~~~~~~~~ 229 (413)
T 2c5s_A 188 GKVMVLLSGGIDSPVAAYLTM-------K---------------RGV----------------SVEAVHFHSPPFTSERA 229 (413)
T ss_dssp EEEEEECCSSSHHHHHHHHHH-------H---------------BTE----------------EEEEEEEECTTTSCHHH
T ss_pred CeEEEEeCCCChHHHHHHHHH-------H---------------cCC----------------cEEEEEEeCCCCCCHHH
Confidence 579999999999999877762 1 342 4889888764 567888
Q ss_pred HHHHHHHHHHh-----CCceEEEecHHHHHH
Q 009550 428 RMLAKKLADEI-----GSWHLDVSIDTVVSA 453 (532)
Q Consensus 428 ~~~a~~la~~l-----g~~~~~i~i~~~~~~ 453 (532)
.+.++++|+.+ |++++++++++.+.+
T Consensus 230 ~~~v~~~a~~l~~~~ggi~~~vv~~~~~~~~ 260 (413)
T 2c5s_A 230 KQKVIDLAQELTKYCKRVTLHLVPFTEVQKT 260 (413)
T ss_dssp HHHHHHHHHHHGGGSSCEEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEECcHHHHH
Confidence 89999999999 999999999887654
No 38
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=98.33 E-value=1.8e-06 Score=81.55 Aligned_cols=64 Identities=23% Similarity=0.208 Sum_probs=50.0
Q ss_pred CCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHH
Q 009550 347 GASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQE 426 (532)
Q Consensus 347 ~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 426 (532)
+++++++++|||+||++++.++. . .+. .++++++.....+
T Consensus 5 ~~~kv~v~~SGG~DS~~ll~ll~--------~--------------~g~----------------~v~~~~v~~~~~~-- 44 (203)
T 3k32_A 5 KLMDVHVLFSGGKDSSLSAVILK--------K--------------LGY----------------NPHLITINFGVIP-- 44 (203)
T ss_dssp -CEEEEEECCCSHHHHHHHHHHH--------H--------------TTE----------------EEEEEEEECSSSC--
T ss_pred cCCeEEEEEECcHHHHHHHHHHH--------H--------------cCC----------------CeEEEEEeCCCch--
Confidence 35689999999999999877762 2 332 3778887654433
Q ss_pred hHHHHHHHHHHhCCceEEEecHHH
Q 009550 427 TRMLAKKLADEIGSWHLDVSIDTV 450 (532)
Q Consensus 427 ~~~~a~~la~~lg~~~~~i~i~~~ 450 (532)
+.+.|+++|+.+|++|+++++++.
T Consensus 45 ~~~~~~~~a~~lgi~~~~~~~~~~ 68 (203)
T 3k32_A 45 SYKLAEETAKILGFKHKVITLDRK 68 (203)
T ss_dssp TTHHHHHHHHHHTCEEEEEECCTH
T ss_pred HHHHHHHHHHHhCCCEEEEECCHH
Confidence 678999999999999999999864
No 39
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=98.26 E-value=1.4e-06 Score=90.50 Aligned_cols=63 Identities=17% Similarity=0.149 Sum_probs=51.5
Q ss_pred CeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHHhH
Q 009550 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (532)
Q Consensus 349 ~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 428 (532)
++++|++|||+|||++|.++ ++ .|+ .|+|+++.... ..+.
T Consensus 15 ~KVVVA~SGGlDSSv~a~~L--------ke--------------~G~----------------eViavt~d~Gq--~~El 54 (421)
T 1vl2_A 15 EKVVLAYSGGLDTSVILKWL--------CE--------------KGF----------------DVIAYVANVGQ--KDDF 54 (421)
T ss_dssp CEEEEECCSSHHHHHHHHHH--------HH--------------TTC----------------EEEEEEEESSC--CCCH
T ss_pred CCEEEEeCCcHHHHHHHHHH--------HH--------------CCC----------------eEEEEEEEcCC--HHHH
Confidence 57999999999999988887 22 343 48999987643 2678
Q ss_pred HHHHHHHHHhCC-ceEEEecHHHH
Q 009550 429 MLAKKLADEIGS-WHLDVSIDTVV 451 (532)
Q Consensus 429 ~~a~~la~~lg~-~~~~i~i~~~~ 451 (532)
++|+++|+.+|+ +|+++|+++.|
T Consensus 55 e~A~~vA~~lGi~~~~VvDl~eef 78 (421)
T 1vl2_A 55 VAIKEKALKTGASKVYVEDLRREF 78 (421)
T ss_dssp HHHHHHHHHHTCSEEEEEECHHHH
T ss_pred HHHHHHHHHcCCceEEEEecHHHH
Confidence 999999999999 99999997644
No 40
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1
Probab=98.25 E-value=4.5e-06 Score=90.64 Aligned_cols=92 Identities=22% Similarity=0.249 Sum_probs=54.8
Q ss_pred HHHhcchhhHHHHHHHHhCCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccC-CCCCCCCChHH
Q 009550 329 EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHY-ANGEFPTDSRE 407 (532)
Q Consensus 329 ~~~~~~~~~~L~~~l~~~~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 407 (532)
+++...+...++.+|.. -..+.+.||||+||+++|+++. +...+ .. .+.. ...+-|
T Consensus 209 ~~lr~~L~~aV~~rl~s--dvpvgv~LSGGlDSS~iaala~-------~~~~~---~~------~~~~~~~a~~~----- 265 (553)
T 1ct9_A 209 NELRQALEDSVKSHLMS--DVPYGVLLSGGLDSSIISAITK-------KYAAR---RV------EDQERSEAWWP----- 265 (553)
T ss_dssp HHHHHHHHHHHHHHTCC--SSCEEEECCSSHHHHHHHHHHH-------HHC-----------------------------
T ss_pred HHHHHHHHHHHHHHhcC--CCceEEeCCCCccHHHHHHHHH-------Hhhcc---cc------ccccccccccC-----
Confidence 44555554444444432 2479999999999999999983 32110 00 0000 000000
Q ss_pred hhcceEEEEecCCCCCCHHhHHHHHHHHHHhCCceEEEecHH
Q 009550 408 FAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDT 449 (532)
Q Consensus 408 ~~~~~~~~~~~~~~~s~~~~~~~a~~la~~lg~~~~~i~i~~ 449 (532)
.++++++....+ .+...|+++|+.+|++|+++++++
T Consensus 266 ----~l~tfsig~~~~--~E~~~A~~vA~~lg~~h~~i~~~~ 301 (553)
T 1ct9_A 266 ----QLHSFAVGLPGS--PDLKAAQEVANHLGTVHHEIHFTV 301 (553)
T ss_dssp -----CEEEEEESTTC--HHHHHHHHHHHHHTCEEEEEECCH
T ss_pred ----ceeEEEecCCCC--cHHHHHHHHHHHhCCCCEEEECCH
Confidence 255666554333 567889999999999999999865
No 41
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=98.11 E-value=8e-06 Score=85.15 Aligned_cols=63 Identities=19% Similarity=0.182 Sum_probs=49.7
Q ss_pred CeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHHhH
Q 009550 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (532)
Q Consensus 349 ~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 428 (532)
++++|++|||+||++++.++. + .+. .|+++++..... .+.
T Consensus 6 ~kVvvalSGGlDSsvll~lL~-------e---------------~G~----------------eV~av~vd~g~~--~e~ 45 (413)
T 2nz2_A 6 GSVVLAYSGGLDTSCILVWLK-------E---------------QGY----------------DVIAYLANIGQK--EDF 45 (413)
T ss_dssp EEEEEECCSSHHHHHHHHHHH-------H---------------TTE----------------EEEEEEEESSCC--CCH
T ss_pred CeEEEEEcChHHHHHHHHHHH-------H---------------cCC----------------EEEEEEEECCcH--HHH
Confidence 689999999999999877762 1 232 488998875432 568
Q ss_pred HHHHHHHHHhCCc-eEEEecHHHH
Q 009550 429 MLAKKLADEIGSW-HLDVSIDTVV 451 (532)
Q Consensus 429 ~~a~~la~~lg~~-~~~i~i~~~~ 451 (532)
+.|+++|+.+|++ ++++++++.+
T Consensus 46 e~a~~~A~~lGi~~~~vvd~~~ef 69 (413)
T 2nz2_A 46 EEARKKALKLGAKKVFIEDVSREF 69 (413)
T ss_dssp HHHHHHHHHHTCSEEEEEECHHHH
T ss_pred HHHHHHHHHhCCCEEEEEeChHHH
Confidence 8999999999998 8899997544
No 42
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=98.04 E-value=1.9e-05 Score=79.67 Aligned_cols=68 Identities=18% Similarity=0.135 Sum_probs=50.5
Q ss_pred CCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcce-EEEEecCCCC--CC
Q 009550 348 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRI-FYTVFMGSEN--SS 424 (532)
Q Consensus 348 ~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--s~ 424 (532)
.++++|++|||+||++++.++. +... .++. . ++++++.... .+
T Consensus 24 ~~~vlva~SGG~DS~~Ll~ll~-------~~~~-----------~~g~----------------~~v~av~vd~g~r~~s 69 (317)
T 1wy5_A 24 ERRVLIAFSGGVDSVVLTDVLL-------KLKN-----------YFSL----------------KEVALAHFNHMLRESA 69 (317)
T ss_dssp CCEEEEECCSSHHHHHHHHHHH-------HSTT-----------TTTC----------------SEEEEEEEECCSSTHH
T ss_pred CCEEEEEecchHHHHHHHHHHH-------HHHH-----------HcCC----------------CEEEEEEEECCCCccc
Confidence 3689999999999999887773 2100 0121 4 7788886443 25
Q ss_pred HHhHHHHHHHHHHhCCceEEEecHH
Q 009550 425 QETRMLAKKLADEIGSWHLDVSIDT 449 (532)
Q Consensus 425 ~~~~~~a~~la~~lg~~~~~i~i~~ 449 (532)
+.+.+.++++|+.+|+++++++++.
T Consensus 70 ~~~~~~v~~~a~~lgi~~~v~~~~~ 94 (317)
T 1wy5_A 70 ERDEEFCKEFAKERNMKIFVGKEDV 94 (317)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECCH
T ss_pred HHHHHHHHHHHHHcCCcEEEEEEec
Confidence 6788889999999999999999864
No 43
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=98.01 E-value=1.5e-05 Score=75.67 Aligned_cols=72 Identities=14% Similarity=0.038 Sum_probs=55.0
Q ss_pred HHHHHHHhCCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEec
Q 009550 339 LWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFM 418 (532)
Q Consensus 339 L~~~l~~~~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (532)
|+..+++.+ ++++|++|||.||++++.|+. + .+. .+.++++
T Consensus 36 l~~~~~~~~-~~v~Va~SGGkDS~vLL~ll~-------~---------------~~~----------------~v~~v~v 76 (215)
T 1sur_A 36 VAWALDNLP-GEYVLSSSFGIQAAVSLHLVN-------Q---------------IRP----------------DIPVILT 76 (215)
T ss_dssp HHHHHHHCC-SEEEEECCCCTTHHHHHHHHH-------H---------------HST----------------TCEEEEE
T ss_pred HHHHHHHcC-CCEEEEecCCHHHHHHHHHHH-------H---------------hCC----------------CCeEEEe
Confidence 344445544 689999999999999888773 2 221 2667777
Q ss_pred CCCCCCHHhHHHHHHHHHHhCCceEEEecHH
Q 009550 419 GSENSSQETRMLAKKLADEIGSWHLDVSIDT 449 (532)
Q Consensus 419 ~~~~s~~~~~~~a~~la~~lg~~~~~i~i~~ 449 (532)
-+....+.+.+.++++|+.+|++++++..+.
T Consensus 77 d~g~~~~e~~~~v~~~~~~~gi~~~v~~~~~ 107 (215)
T 1sur_A 77 DTGYLFPETYRFIDELTDKLKLNLKVYRATE 107 (215)
T ss_dssp ECSCBCHHHHHHHHHHHHHTTCEEEEEECSS
T ss_pred eCCCCCHHHHHHHHHHHHHhCCcEEEEeCCC
Confidence 7655678899999999999999999998764
No 44
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=97.97 E-value=7.8e-06 Score=85.73 Aligned_cols=66 Identities=17% Similarity=0.147 Sum_probs=52.0
Q ss_pred CeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHHhH
Q 009550 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (532)
Q Consensus 349 ~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 428 (532)
++++|++|||+||++++.++. . .+. .|+++++.....++.+.
T Consensus 11 ~KVvVA~SGGlDSSvll~~L~--------e--------------~G~----------------eViavtvd~Gq~~~~el 52 (455)
T 1k92_A 11 QRIGIAFSGGLDTSAALLWMR--------Q--------------KGA----------------VPYAYTANLGQPDEEDY 52 (455)
T ss_dssp SEEEEECCSSHHHHHHHHHHH--------H--------------TTC----------------EEEEEEEECCCTTCSCT
T ss_pred CeEEEEEcChHHHHHHHHHHH--------H--------------cCC----------------EEEEEEEEcCCCCHHHH
Confidence 689999999999999877762 1 333 48898887544344678
Q ss_pred HHHHHHHHHhCC-ceEEEecHHHHH
Q 009550 429 MLAKKLADEIGS-WHLDVSIDTVVS 452 (532)
Q Consensus 429 ~~a~~la~~lg~-~~~~i~i~~~~~ 452 (532)
+.|+++|+.+|+ +|+++|+++.+.
T Consensus 53 e~a~~~A~~lGi~~~~vvD~~eef~ 77 (455)
T 1k92_A 53 DAIPRRAMEYGAENARLIDCRKQLV 77 (455)
T ss_dssp THHHHHHHHHTCSEEEEEECHHHHH
T ss_pred HHHHHHHHHhCCCeEEEEeChHHHH
Confidence 899999999999 899999976443
No 45
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=97.82 E-value=9.4e-05 Score=78.53 Aligned_cols=76 Identities=16% Similarity=0.143 Sum_probs=53.7
Q ss_pred HHHHHHhC----CCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEE
Q 009550 340 WDYLRRSG----ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYT 415 (532)
Q Consensus 340 ~~~l~~~~----~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (532)
.+++++.+ .++++||+|||+||++++.++.. .. .+.+. .+++
T Consensus 6 ~~~i~~~~l~~~~~~vlVa~SGG~DS~~Ll~ll~~-------~~-----------~~~~~----------------~v~a 51 (464)
T 3a2k_A 6 RAFIHRHQLLSEGAAVIVGVSGGPDSLALLHVFLS-------LR-----------DEWKL----------------QVIA 51 (464)
T ss_dssp HHHHHHTCSSSCSSBEEEECCSSHHHHHHHHHHHH-------HH-----------HTTTC----------------BCEE
T ss_pred HHHHHHcCCCCCCCEEEEEEcCcHHHHHHHHHHHH-------HH-----------HHcCC----------------eEEE
Confidence 34455543 36799999999999998877732 10 00222 3778
Q ss_pred EecCCCCC---CHHhHHHHHHHHHHhCCceEEEecHH
Q 009550 416 VFMGSENS---SQETRMLAKKLADEIGSWHLDVSIDT 449 (532)
Q Consensus 416 ~~~~~~~s---~~~~~~~a~~la~~lg~~~~~i~i~~ 449 (532)
+++..... ++.+.+.++++|+.+|+++++++++.
T Consensus 52 vhvdhglrg~~s~~~~~~v~~~~~~lgi~~~v~~~~~ 88 (464)
T 3a2k_A 52 AHVDHMFRGRESEEEMEFVKRFCVERRILCETAQIDV 88 (464)
T ss_dssp EEEECTTCTHHHHHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred EEEECCCCccccHHHHHHHHHHHHHcCCcEEEEEech
Confidence 88874433 45677889999999999999998863
No 46
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=97.75 E-value=3.3e-05 Score=74.24 Aligned_cols=75 Identities=13% Similarity=0.037 Sum_probs=47.5
Q ss_pred CCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEec--CCC----
Q 009550 348 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFM--GSE---- 421 (532)
Q Consensus 348 ~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---- 421 (532)
..++++++|||.||++++.++ .+ .|+ .|+++++ |..
T Consensus 4 ~MKvvvl~SGGkDSs~al~~l-------~~---------------~G~----------------eV~~L~~~~~~~~~s~ 45 (237)
T 3rjz_A 4 LADVAVLYSGGKDSNYALYWA-------IK---------------NRF----------------SVKFLVTMVSENEESY 45 (237)
T ss_dssp CSEEEEECCSSHHHHHHHHHH-------HH---------------TTC----------------EEEEEEEEECC-----
T ss_pred CCEEEEEecCcHHHHHHHHHH-------HH---------------cCC----------------eEEEEEEEcCCCCCcc
Confidence 357999999999999977776 12 343 3666643 211
Q ss_pred CCCHHhHHHHHHHHHHhCCceEEEecHHH----HHHHHHHhHh
Q 009550 422 NSSQETRMLAKKLADEIGSWHLDVSIDTV----VSAFLSLFQT 460 (532)
Q Consensus 422 ~s~~~~~~~a~~la~~lg~~~~~i~i~~~----~~~~~~~~~~ 460 (532)
.......+.|+..|+.+|++|+++++... ++.+...++.
T Consensus 46 ~~h~~~~e~a~~~A~~LGIpl~~v~~~g~~~~e~e~l~~~l~~ 88 (237)
T 3rjz_A 46 MYHTINANLTDLQARALGIPLVKGFTQGEKEKEVEDLKRVLSG 88 (237)
T ss_dssp ---CCSSSHHHHHHHHHTCCEEEEEC------CHHHHHHHHTT
T ss_pred ccCCccHHHHHHHHHHcCCCEEEEECCCCchHHHHHHHHHHHh
Confidence 00123346789999999999999999853 3444444443
No 47
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=97.59 E-value=0.00019 Score=69.87 Aligned_cols=63 Identities=14% Similarity=0.090 Sum_probs=51.5
Q ss_pred CeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHHhH
Q 009550 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (532)
Q Consensus 349 ~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 428 (532)
++++|++|||.||++++.|+. + ... .+.++++.+....++|.
T Consensus 46 ~~v~va~SGG~DS~vLL~ll~-------~---------------~~~----------------~v~vv~idtg~~~~et~ 87 (252)
T 2o8v_A 46 GEYVLSSSFGIQAAVSLHLVN-------Q---------------IRP----------------DIPVILTDTGYLFPETY 87 (252)
T ss_dssp SCEEEECCCSTTHHHHHHHHH-------H---------------HST----------------TCEEEECCCSCBCHHHH
T ss_pred CCEEEEeCCCHHHHHHHHHHH-------H---------------hCC----------------CCeEEEecCCCCCHHHH
Confidence 579999999999999877773 2 221 26788888776778999
Q ss_pred HHHHHHHHHhCCceEEEecHH
Q 009550 429 MLAKKLADEIGSWHLDVSIDT 449 (532)
Q Consensus 429 ~~a~~la~~lg~~~~~i~i~~ 449 (532)
+.++++|+.+|++++++..+.
T Consensus 88 ~~~~~~~~~~gi~~~v~~~~~ 108 (252)
T 2o8v_A 88 RFIDELTDKLKLNLKVYRATE 108 (252)
T ss_dssp HHHHHHHHHTTCEEEECCCSS
T ss_pred HHHHHHHHHhCCceEEEcCCC
Confidence 999999999999999997764
No 48
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=97.51 E-value=0.0002 Score=75.36 Aligned_cols=77 Identities=13% Similarity=0.065 Sum_probs=54.6
Q ss_pred HHHHHHHHhCCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEe
Q 009550 338 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVF 417 (532)
Q Consensus 338 ~L~~~l~~~~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (532)
-|.+++.+. ++++||+|||+||++++.++. +..+. ..+. .+++++
T Consensus 5 ~l~~~l~~~--~~vlVa~SGG~DS~~Ll~ll~-------~~~~~----------~~g~----------------~v~avh 49 (433)
T 1ni5_A 5 TLNRQLLTS--RQILVAFSGGLDSTVLLHQLV-------QWRTE----------NPGV----------------ALRAIH 49 (433)
T ss_dssp HHHHHHTTC--SEEEEECCSBHHHHHHHHHHH-------HHHTT----------STTC----------------EEEEEE
T ss_pred hHHHhcCCC--CEEEEEEcchHHHHHHHHHHH-------HHHHh----------cCCC----------------eEEEEE
Confidence 355666554 689999999999999877773 21000 0121 478888
Q ss_pred cCCCC--CCHHhHHHHHHHHHHhCCceEEEecHH
Q 009550 418 MGSEN--SSQETRMLAKKLADEIGSWHLDVSIDT 449 (532)
Q Consensus 418 ~~~~~--s~~~~~~~a~~la~~lg~~~~~i~i~~ 449 (532)
+.... .++.+.+.++++|+.+|++|++++++.
T Consensus 50 vdhglr~~s~~~~~~v~~~~~~lgi~~~v~~~~~ 83 (433)
T 1ni5_A 50 VHHGLSANADAWVTHCENVCQQWQVPLVVERVQL 83 (433)
T ss_dssp ECCSCCSSHHHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred EECCCCcccHHHHHHHHHHHHHcCCcEEEEEecC
Confidence 87432 345677889999999999999998864
No 49
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=97.39 E-value=0.00031 Score=70.33 Aligned_cols=61 Identities=15% Similarity=0.160 Sum_probs=50.9
Q ss_pred CeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHHhH
Q 009550 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (532)
Q Consensus 349 ~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 428 (532)
.+++++||| +||+++|.++. + .|+ .|++++|. .++.+.
T Consensus 180 ~kvlvllSG-vDS~vaa~ll~-------~---------------~G~----------------~v~~v~~~---~~~~~~ 217 (307)
T 1vbk_A 180 GRMIGILHD-ELSALAIFLMM-------K---------------RGV----------------EVIPVYIG---KDDKNL 217 (307)
T ss_dssp CEEEEECSS-HHHHHHHHHHH-------H---------------BTC----------------EEEEEEES---CSSHHH
T ss_pred CcEEEEEeC-CcHHHHHHHHH-------h---------------CCC----------------eEEEEEEE---ECHHHH
Confidence 489999999 99999888762 1 454 48999998 456778
Q ss_pred HHHHHHHHHh-------CCceEEEe-cHHHH
Q 009550 429 MLAKKLADEI-------GSWHLDVS-IDTVV 451 (532)
Q Consensus 429 ~~a~~la~~l-------g~~~~~i~-i~~~~ 451 (532)
+.|+++|+.| +++++.+| +.+.+
T Consensus 218 ~~a~~~a~~l~~~~~~~~i~~~vv~~~~~~~ 248 (307)
T 1vbk_A 218 EKVRSLWNLLKRYSYGSKGFLVVAESFDRVL 248 (307)
T ss_dssp HHHHHHHHHHHTTCTTSCCCCEEESSHHHHH
T ss_pred HHHHHHHHHHhhhccCCCCcEEEeCCCHHHH
Confidence 8999999999 99999999 98877
No 50
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=97.05 E-value=0.0011 Score=66.32 Aligned_cols=94 Identities=11% Similarity=0.070 Sum_probs=56.4
Q ss_pred HHHHHHHhCC--CeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEE
Q 009550 339 LWDYLRRSGA--SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTV 416 (532)
Q Consensus 339 L~~~l~~~~~--~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (532)
|++.+++.+. ..++|++|||.||++++.|+. +++.. .+..+ .+.... .....+.....+.++
T Consensus 42 l~~~~~~~~~~~~~i~vafSGGKDS~VLL~L~~-------~~l~~---~~~~~---~~~~~~---~~~~~~~~~~~i~vv 105 (306)
T 2wsi_A 42 LSEIFVRWSPLNGEISFSYNGGKDCQVLLLLYL-------SCLWE---YFFIK---AQNSQF---DFEFQSFPMQRLPTV 105 (306)
T ss_dssp HHTTTTTSCSSSSSEEEECCSCHHHHHHHHHHH-------HHHHH---HHHHH---HHHC-----------CCCCCEEEE
T ss_pred HHHHHHHcccccCCEEEEecCCHHHHHHHHHHH-------HHHhh---hcccc---cccccc---cccccccCCCCeeEE
Confidence 3334444442 579999999999999888873 33210 00000 000000 000000000137788
Q ss_pred ecCCCCCCHHhHHHHHHHHHHhCCceEEEecH
Q 009550 417 FMGSENSSQETRMLAKKLADEIGSWHLDVSID 448 (532)
Q Consensus 417 ~~~~~~s~~~~~~~a~~la~~lg~~~~~i~i~ 448 (532)
++-+....+++.+.+.++++.+|++++++..+
T Consensus 106 ~iDtg~~fpet~~fv~~~~~~ygl~l~v~~~~ 137 (306)
T 2wsi_A 106 FIDQEETFPTLENFVLETSERYCLSLYESQRQ 137 (306)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHTTEEEEECCC-
T ss_pred EEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 88887889999999999999999999988755
No 51
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=97.04 E-value=0.0017 Score=65.48 Aligned_cols=77 Identities=14% Similarity=0.104 Sum_probs=55.6
Q ss_pred hHHHHHHHHhCCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEE
Q 009550 337 CWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTV 416 (532)
Q Consensus 337 ~~L~~~l~~~~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (532)
.-|+..+.+. .+++|++|||.||++++.|+. +++. .... .+.++
T Consensus 37 ~ilr~~~~~~--~~ivVa~SGGkDS~vLL~Ll~-------~~~~------------~~~~---------------~i~vv 80 (325)
T 1zun_A 37 HIIREVAAEF--DNPVMLYSIGKDSAVMLHLAR-------KAFF------------PGKL---------------PFPVM 80 (325)
T ss_dssp HHHHHHHHHC--SSEEEECCSSHHHHHHHHHHH-------HHHT------------TSCC---------------SSCEE
T ss_pred HHHHHHHHhC--CCEEEEEcChHHHHHHHHHHH-------Hhcc------------ccCC---------------CEEEE
Confidence 4455555554 589999999999999888773 3310 0001 25677
Q ss_pred ecCCCCCCHHhHHHHHHHHHHhCCceEEEecHH
Q 009550 417 FMGSENSSQETRMLAKKLADEIGSWHLDVSIDT 449 (532)
Q Consensus 417 ~~~~~~s~~~~~~~a~~la~~lg~~~~~i~i~~ 449 (532)
++.+....+++.+.+.++|+.+|++++++..+.
T Consensus 81 ~vDtg~~~~et~~~v~~~~~~~gi~l~v~~~~~ 113 (325)
T 1zun_A 81 HVDTRWKFQEMYRFRDQMVEEMGLDLITHINPD 113 (325)
T ss_dssp EECCSCCCHHHHHHHHHHHHTTTCCEEEECC--
T ss_pred EEECCCCCHHHHHHHHHHHHHcCCCEEEEeCch
Confidence 777766778999999999999999999998764
No 52
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=97.00 E-value=0.0016 Score=63.50 Aligned_cols=74 Identities=9% Similarity=-0.019 Sum_probs=54.9
Q ss_pred HHHHHHHHhCCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEe
Q 009550 338 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVF 417 (532)
Q Consensus 338 ~L~~~l~~~~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (532)
-|+..+.+. .+++|++|||.||++++.|+. +. .... ..+..++
T Consensus 33 ~l~~a~~~~--~~v~va~SGGkDS~vLL~ll~-------~~--------------~~~~--------------~~i~vv~ 75 (261)
T 2oq2_A 33 IIAWSIVTF--PHLFQTTAFGLTGLVTIDMLS-------KL--------------SEKY--------------YMPELLF 75 (261)
T ss_dssp HHHHHHHHC--SSEEEECCCCHHHHHHHHHHH-------HH--------------TTTS--------------CCCEEEE
T ss_pred HHHHHHHHC--CCEEEEecCCHHHHHHHHHHH-------Hh--------------CccC--------------CCeeEEE
Confidence 344445554 479999999999999888773 22 1100 0266778
Q ss_pred cCCCCCCHHhHHHHHHHHHHhCC----ceEEEecH
Q 009550 418 MGSENSSQETRMLAKKLADEIGS----WHLDVSID 448 (532)
Q Consensus 418 ~~~~~s~~~~~~~a~~la~~lg~----~~~~i~i~ 448 (532)
+.+....++|.+.+.++++.+|+ +++++..+
T Consensus 76 iDtg~~~~et~~~v~~~~~~~gl~~~~~l~v~~~~ 110 (261)
T 2oq2_A 76 IDTLHHFPQTLTLKNEIEKKYYQPKNQTIHVYKPD 110 (261)
T ss_dssp ECCSCBCHHHHHHHHHHHHHHTGGGTCCCEEECST
T ss_pred ecCCCCCHHHHHHHHHHHHHhCCCCCCCeEEEecC
Confidence 87777778999999999999999 99988765
No 53
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa}
Probab=96.50 E-value=0.0077 Score=59.15 Aligned_cols=71 Identities=15% Similarity=0.153 Sum_probs=54.1
Q ss_pred HHHHHHHhCCCeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEec
Q 009550 339 LWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFM 418 (532)
Q Consensus 339 L~~~l~~~~~~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (532)
|+..+...| ++++|++| |.||++++.|+. + ++. .+..+++
T Consensus 46 l~~a~~~~g-~~i~Va~S-GkDS~vLL~Ll~-------~---------------~~~----------------~i~vv~i 85 (275)
T 2goy_A 46 LKAAFEHFG-DELWISFS-GAEDVVLVDMAW-------K---------------LNR----------------NVKVFSL 85 (275)
T ss_dssp HHHHHHHHS-TTEEEECC-SSTTHHHHHHHH-------H---------------HCT----------------TCCEEEE
T ss_pred HHHHHHHcC-CCEEEEee-cHHHHHHHHHHH-------H---------------hCC----------------CceEEEE
Confidence 444444445 68999999 999999877762 2 221 2567777
Q ss_pred CCCCCCHHhHHHHHHHHHHhCCceEEEecHH
Q 009550 419 GSENSSQETRMLAKKLADEIGSWHLDVSIDT 449 (532)
Q Consensus 419 ~~~~s~~~~~~~a~~la~~lg~~~~~i~i~~ 449 (532)
.+....++|.+.++++++.+|++++++..+.
T Consensus 86 Dtg~~~~et~~~v~~~~~~~gi~l~v~~~~~ 116 (275)
T 2goy_A 86 DTGRLHPETYRFIDQVREHYGIAIDVLSPDP 116 (275)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTCCCEEECCCH
T ss_pred eCCCCCHHHHHHHHHHHHHHCCeEEEEeCCc
Confidence 7767778999999999999999999887764
No 54
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=94.49 E-value=0.081 Score=52.35 Aligned_cols=94 Identities=7% Similarity=0.025 Sum_probs=54.6
Q ss_pred HHHHHHHHhCC--CeEEEeccCchhHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEE
Q 009550 338 WLWDYLRRSGA--SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYT 415 (532)
Q Consensus 338 ~L~~~l~~~~~--~~~~l~lSGGiDSa~~a~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (532)
-|+.-+.+.+- ..+++++|||.||+|++-|+. +++... +......-..+. .....| ...+-.
T Consensus 46 iLrea~~~f~~~~~~ialSfSGGKDStVLLhL~~-------kal~~~---~~~~~~~~~~~~--~~~~~p----~~~ipv 109 (308)
T 3fwk_A 46 LINETFPKWSPLNGEISFSYNGGKDCQVLLLLYL-------SCLWEY---YIVKLSQSQFDG--KFHRFP----LTKLPT 109 (308)
T ss_dssp HHHHTTTTSCSSSSSEEEECCSSHHHHHHHHHHH-------HHHHHH---HTCCE-----------------------EE
T ss_pred HHHHHHHHcccccCCEEEEecCChhHHHHHHHHH-------HHhhhh---cccccccccccc--cccccC----CCCccE
Confidence 44444444543 469999999999999888873 332000 000000000000 000000 003667
Q ss_pred EecCCCCCCHHhHHHHHHHHHHhCCceEEEec
Q 009550 416 VFMGSENSSQETRMLAKKLADEIGSWHLDVSI 447 (532)
Q Consensus 416 ~~~~~~~s~~~~~~~a~~la~~lg~~~~~i~i 447 (532)
+++.+...-++|.+...++++.+|++++++.-
T Consensus 110 ifiDTG~~FpET~ef~d~~~~~ygL~L~v~~p 141 (308)
T 3fwk_A 110 VFIDHDDTFKTLENFIEETSLRYSLSLYESDR 141 (308)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHTTEEEEECCT
T ss_pred EEEeCCCCCHHHHHHHHHHHHHhCCcEEEeCC
Confidence 88888888999999999999999999887643
No 55
>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5
Probab=65.73 E-value=27 Score=32.41 Aligned_cols=63 Identities=6% Similarity=-0.239 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhhHHHHHHHHHHhcccCCCeEEEE
Q 009550 18 FDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCSF 85 (532)
Q Consensus 18 ~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~iiv 85 (532)
.+..++.+.+.++.|+.-|++.|++. +|+.+... ...+..+...+.+.++++.++++++.+.+
T Consensus 80 ~~~~~~~~~~~i~~a~~lG~~~v~~~----~g~~~~~~-~~~~~~~~~~~~l~~l~~~a~~~gv~l~~ 142 (260)
T 1k77_A 80 EHEAHADIDLALEYALALNCEQVHVM----AGVVPAGE-DAERYRAVFIDNIRYAADRFAPHGKRILV 142 (260)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECC----CCBCCTTS-CHHHHHHHHHHHHHHHHHHHGGGTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEC----cCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 46678889999999999999999873 34433221 12233444566777777777778876543
No 56
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=65.25 E-value=24 Score=33.21 Aligned_cols=63 Identities=11% Similarity=-0.115 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhhHHHHHHHHHHhcccCCCeEEEE
Q 009550 17 DFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCSF 85 (532)
Q Consensus 17 d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~iiv 85 (532)
..+..++.+.+.++.|+.-|++.|++. +| .+.+ ....+..+...+.|.++++.+++.|+.+.+
T Consensus 87 ~r~~~~~~~~~~i~~A~~lGa~~v~~~----~g-~~~~-~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~l 149 (269)
T 3ngf_A 87 REQEFRDNVDIALHYALALDCRTLHAM----SG-ITEG-LDRKACEETFIENFRYAADKLAPHGITVLV 149 (269)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCEEECC----BC-BCTT-SCHHHHHHHHHHHHHHHHHHHGGGTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEc----cC-CCCC-CCHHHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 356677888999999999999988873 34 2211 112233445566778888777778876643
No 57
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=62.89 E-value=17 Score=34.54 Aligned_cols=62 Identities=16% Similarity=0.048 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhhHHHHHHHHHHhcccCCCeEEEE
Q 009550 17 DFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCSF 85 (532)
Q Consensus 17 d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~iiv 85 (532)
..+..++.+.+.++.|+.-|++.|++. +|+.+.+ ..+..+...+.+.++++.++++|+.+.+
T Consensus 96 ~r~~~~~~~~~~i~~a~~lG~~~v~~~----~G~~~~~---~~~~~~~~~~~l~~l~~~a~~~Gv~l~l 157 (290)
T 3tva_A 96 TRASRVAEMKEISDFASWVGCPAIGLH----IGFVPES---SSPDYSELVRVTQDLLTHAANHGQAVHL 157 (290)
T ss_dssp THHHHHHHHHHHHHHHHHHTCSEEEEC----CCCCCCT---TSHHHHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEc----CCCCccc---chHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 346678889999999999999988864 4655443 2233445566788888777788887644
No 58
>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=61.69 E-value=21 Score=34.63 Aligned_cols=74 Identities=15% Similarity=0.055 Sum_probs=47.6
Q ss_pred eEEEEEeccCC-----CCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhhHHHHHHHHHHhcccC
Q 009550 4 LKVATCNLNNW-----ALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWT 78 (532)
Q Consensus 4 ~rVAlvQ~~~~-----~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~ 78 (532)
++|..+..... ....+...+.+.+.++.|+.-|++.|++|- +... ...+-.+...+.|.++++.+++
T Consensus 90 L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~A~~lG~~~v~~~~-----~~~~---~~~~~~~~~~~~l~~l~~~a~~ 161 (305)
T 3obe_A 90 LRISSSHLTPSLREYTKENMPKFDEFWKKATDIHAELGVSCMVQPS-----LPRI---ENEDDAKVVSEIFNRAGEITKK 161 (305)
T ss_dssp CEEEEEBCCCSCCCCCGGGHHHHHHHHHHHHHHHHHHTCSEEEECC-----CCCC---SSHHHHHHHHHHHHHHHHHHHT
T ss_pred CeEEEeeccccccccchhhHHHHHHHHHHHHHHHHHcCCCEEEeCC-----CCCC---CCHHHHHHHHHHHHHHHHHHHH
Confidence 56666654331 223466678888899999999999999872 2221 1122234455678888887778
Q ss_pred CCeEEEE
Q 009550 79 DGILCSF 85 (532)
Q Consensus 79 ~~i~iiv 85 (532)
+|+.+.+
T Consensus 162 ~Gv~l~l 168 (305)
T 3obe_A 162 AGILWGY 168 (305)
T ss_dssp TTCEEEE
T ss_pred cCCEEEE
Confidence 8987654
No 59
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=60.54 E-value=20 Score=33.93 Aligned_cols=77 Identities=8% Similarity=-0.048 Sum_probs=47.8
Q ss_pred eEEEEEeccC---CCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhhHHHHHHHHHHhcccCCC
Q 009550 4 LKVATCNLNN---WALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDG 80 (532)
Q Consensus 4 ~rVAlvQ~~~---~~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~ 80 (532)
+++..+.... ...+.+...+.+.+.++.|+.-|++.|++ .+|+...+.. ..+..+...+.+.++++.++++|
T Consensus 62 l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~A~~lG~~~v~~----~~g~~~~~~~-~~~~~~~~~~~l~~l~~~a~~~G 136 (286)
T 3dx5_A 62 LEITMISDYLDISLSADFEKTIEKCEQLAILANWFKTNKIRT----FAGQKGSADF-SQQERQEYVNRIRMICELFAQHN 136 (286)
T ss_dssp CCEEEEECCCCCSTTSCHHHHHHHHHHHHHHHHHHTCCEEEE----CSCSSCGGGS-CHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEecCCCCCCchhHHHHHHHHHHHHHHHHHhCCCEEEE----cCCCCCcccC-cHHHHHHHHHHHHHHHHHHHHhC
Confidence 4555554332 34556778889999999999999998854 2344332211 12233445566777777777788
Q ss_pred eEEEE
Q 009550 81 ILCSF 85 (532)
Q Consensus 81 i~iiv 85 (532)
+.+.+
T Consensus 137 v~l~l 141 (286)
T 3dx5_A 137 MYVLL 141 (286)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 76543
No 60
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A
Probab=52.06 E-value=13 Score=34.82 Aligned_cols=63 Identities=13% Similarity=0.009 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhhHHHHHHHHHHhcccCCCeEEEE
Q 009550 19 DCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCSF 85 (532)
Q Consensus 19 ~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~iiv 85 (532)
+..++.+.+.++.|+.-|++.|+++ +|+.+.......+..+...+.+.++++.++++++.+.+
T Consensus 79 ~~~~~~~~~~i~~a~~lG~~~v~~~----~g~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~l 141 (275)
T 3qc0_A 79 EKAIDDNRRAVDEAAELGADCLVLV----AGGLPGGSKNIDAARRMVVEGIAAVLPHARAAGVPLAI 141 (275)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCEEEE----CBCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEe----eCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 4567788889999999999988765 34332211112233344556677777766677875543
No 61
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=50.13 E-value=21 Score=33.99 Aligned_cols=61 Identities=15% Similarity=0.135 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCC-CcccccchhhhHHHHHHHHHHhcccCCCeEEEE
Q 009550 19 DCNLKNIKESIGRAKEAGAVIRLGPELEITGYGC-EDHFLELDTVTHAWECLKDLLLGDWTDGILCSF 85 (532)
Q Consensus 19 ~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~-~d~~~~~~~~~~~~~~l~~la~~~~~~~i~iiv 85 (532)
+..++.+.+.++.|+.-|++.|+++ |+.. .+. ...+..+...+.+.++++.+++.++.+.+
T Consensus 104 ~~~~~~~~~~i~~A~~lG~~~v~~~-----~~~~~~~~-~~~~~~~~~~~~l~~l~~~a~~~Gv~l~l 165 (295)
T 3cqj_A 104 AQGLEIMRKAIQFAQDVGIRVIQLA-----GYDVYYQE-ANNETRRRFRDGLKESVEMASRAQVTLAM 165 (295)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEC-----CCSCSSSC-CCHHHHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEC-----CCCCCcCc-CHHHHHHHHHHHHHHHHHHHHHhCCEEEE
Confidence 3567788889999999999999987 2221 111 11223344556677777766677876543
No 62
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=49.55 E-value=25 Score=32.82 Aligned_cols=62 Identities=10% Similarity=0.048 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhhHHHHHHHHHHhcccCCCeEEEE
Q 009550 19 DCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCSF 85 (532)
Q Consensus 19 ~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~iiv 85 (532)
+...+.+.+.++.|+.-|++.|++ .+|+...+. ...+..+...+.+.++++.++++|+.+.+
T Consensus 80 ~~~~~~~~~~i~~a~~lG~~~v~~----~~g~~~~~~-~~~~~~~~~~~~l~~l~~~a~~~gv~l~l 141 (278)
T 1i60_A 80 NEIITEFKGMMETCKTLGVKYVVA----VPLVTEQKI-VKEEIKKSSVDVLTELSDIAEPYGVKIAL 141 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEE----ECCBCSSCC-CHHHHHHHHHHHHHHHHHHHGGGTCEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEE----ecCCCCCCC-CHHHHHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 456778888999999999998887 234432211 11233344556677777777778876543
No 63
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=46.87 E-value=34 Score=32.35 Aligned_cols=63 Identities=16% Similarity=0.120 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCc-cc-ccchhhhHHHHHHHHHHhcccCCCeEEEE
Q 009550 19 DCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCED-HF-LELDTVTHAWECLKDLLLGDWTDGILCSF 85 (532)
Q Consensus 19 ~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d-~~-~~~~~~~~~~~~l~~la~~~~~~~i~iiv 85 (532)
+..++.+.+.++.|+.-|++.|+++ +|+...+ .. ......+...+.|.++++.++++|+.+.+
T Consensus 100 ~~~~~~~~~~i~~a~~lGa~~v~~~----~g~~~~~~~~p~~~~~~~~~~~~l~~l~~~a~~~Gv~l~l 164 (287)
T 3kws_A 100 KECMDTMKEIIAAAGELGSTGVIIV----PAFNGQVPALPHTMETRDFLCEQFNEMGTFAAQHGTSVIF 164 (287)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEC----SCCTTCCSBCCSSHHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEe----cCcCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 4567788889999999999988875 3333211 00 12233445566777777777778876543
No 64
>2hk0_A D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00A {Agrobacterium tumefaciens} PDB: 2hk1_A*
Probab=42.99 E-value=55 Score=31.29 Aligned_cols=67 Identities=6% Similarity=-0.102 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhhHHHHHHHHHHhcccCCCeEEEE
Q 009550 19 DCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCSF 85 (532)
Q Consensus 19 ~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~iiv 85 (532)
+..++.+.+.++.|+.-|++.|+.|=....|..........+..+...+.+.++++.++++++.+.+
T Consensus 103 ~~~~~~~~~~i~~A~~lG~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~l 169 (309)
T 2hk0_A 103 AAGKAFFERTLSNVAKLDIHTIGGALHSYWPIDYSQPVDKAGDYARGVEGINGIADFANDLGINLCI 169 (309)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEECTTSCSSCCTTSCCCHHHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEeeccccccccCCCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 4567888899999999999998865211113321111012233344556677777777678876543
No 65
>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=42.80 E-value=66 Score=30.83 Aligned_cols=57 Identities=11% Similarity=0.014 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhhHHHHHHHHHHhcccCCCeE
Q 009550 18 FDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGIL 82 (532)
Q Consensus 18 ~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~ 82 (532)
.+.-.+.+.+.++.|+.-|++.|++|-. +.. ...+-.+...+.|.++++.++++|+.
T Consensus 103 ~~~~~~~~~~~i~~A~~lG~~~v~~~~~-----~~~---~~~~~~~~~~~~l~~l~~~a~~~Gv~ 159 (303)
T 3l23_A 103 TPKIMEYWKATAADHAKLGCKYLIQPMM-----PTI---TTHDEAKLVCDIFNQASDVIKAEGIA 159 (303)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEEECSC-----CCC---CSHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECCC-----CCC---CCHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 3566788889999999999999998731 111 11223344566788888877788886
No 66
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp}
Probab=40.66 E-value=41 Score=32.15 Aligned_cols=69 Identities=12% Similarity=0.057 Sum_probs=39.4
Q ss_pred HHHhCCCeEEEEcCC--CCccccc--------hHHHHHHHHHHHHHcCcEEEEEcCcCCCCCceeeeccEEEE-eCCeEE
Q 009550 186 DLALNGVEVFMNASG--SHHQLRK--------LDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVV-VNGDMI 254 (532)
Q Consensus 186 ~la~~GadlIl~psa--s~~~~g~--------~~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~f~G~S~I~-p~G~il 254 (532)
..+.+|||+|+.|=. +.|.... .....+.++..|.+++++++.-...-.. ++..| -.++++ |+|+++
T Consensus 48 ~A~~~gadlvvfPE~~l~gy~~~~~~~~a~~~~~~~~~~l~~la~~~~i~iv~G~~~~~~-~~~~y-Ns~~~i~~~G~i~ 125 (281)
T 3p8k_A 48 KNMNAEVDVVVLPEMWNNGYDLEHLNEKADNNLGQSFSFIKHLAEKYKVDIVAGSVSNIR-NNQIF-NTAFSVNKSGQLI 125 (281)
T ss_dssp HHCCTTCCEEECCSSTTTTTCGGGHHHHSEETTHHHHHHHHHHHHHHTCEEEEEEEEEEE-TTEEE-EEEEEECTTSCEE
T ss_pred HHHhCCCcEEEcCCCccCCCChhHHHHhhhccCcHHHHHHHHHHhhCCeEEEEeeeEEcc-CCcEE-EEEEEEcCCCeEE
Confidence 344579999999943 2332221 1234566778888999987643211111 22233 345555 899987
Q ss_pred Ee
Q 009550 255 AQ 256 (532)
Q Consensus 255 a~ 256 (532)
..
T Consensus 126 ~~ 127 (281)
T 3p8k_A 126 NE 127 (281)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 67
>3ayv_A Putative uncharacterized protein TTHB071; structural genomics, riken structural genomics/proteomics in RSGI, TIM barrel, unknown function; 1.85A {Thermus thermophilus} PDB: 3ayt_A
Probab=38.50 E-value=32 Score=31.89 Aligned_cols=63 Identities=19% Similarity=0.085 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccc-ccchhhhHHHHHHHHHHhcccCCCeEEEE
Q 009550 19 DCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHF-LELDTVTHAWECLKDLLLGDWTDGILCSF 85 (532)
Q Consensus 19 ~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~-~~~~~~~~~~~~l~~la~~~~~~~i~iiv 85 (532)
+..++.+.+.++.|+.-|++.|++. +|+...+.. ...+..+...+.+.++++.++++|+.+.+
T Consensus 72 ~~~~~~~~~~i~~A~~lGa~~v~~~----~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~l 135 (254)
T 3ayv_A 72 GLTLRRLLFGLDRAAELGADRAVFH----SGIPHGRTPEEALERALPLAEALGLVVRRARTLGVRLLL 135 (254)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEE----CCCCTTCCHHHHHHTHHHHHHHTHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEC----CCCCcccccccHHHHHHHHHHHHHHHHHHHhhcCCEEEE
Confidence 4567788889999999999988764 344332210 11223344556677777766667876543
No 68
>3bdk_A D-mannonate dehydratase; xylose isomerase-like TIM barrel, lyase; HET: DNO; 2.50A {Streptococcus suis} PDB: 3ban_A* 3dbn_A* 3fvm_A
Probab=38.35 E-value=87 Score=31.64 Aligned_cols=42 Identities=19% Similarity=0.109 Sum_probs=30.5
Q ss_pred eEEEEEeccCC-------CCCHHHHHHHHHHHHHHHHHCCCeEEEcCCC
Q 009550 4 LKVATCNLNNW-------ALDFDCNLKNIKESIGRAKEAGAVIRLGPEL 45 (532)
Q Consensus 4 ~rVAlvQ~~~~-------~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl 45 (532)
++|..++..+. ..+.+..++.+++.|+.|++.|+.+|++..+
T Consensus 78 L~i~~i~s~~~~~~i~~~~~~r~~~ie~~k~~i~~aa~lGi~~v~~nf~ 126 (386)
T 3bdk_A 78 LEITVIESIPVHEDIKQGKPNRDALIENYKTSIRNVGAAGIPVVCYNFM 126 (386)
T ss_dssp CEEEEEECCCCCHHHHTTCTTHHHHHHHHHHHHHHHHTTTCCEEEECCC
T ss_pred CEEEEEeccccccccccCcHHHHHHHHHHHHHHHHHHHcCCCEEEEcCc
Confidence 56766653221 3456778888899999999999999997444
No 69
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=36.72 E-value=78 Score=29.29 Aligned_cols=57 Identities=14% Similarity=-0.106 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhhHH-HHHHHHHHhcccCCCeEEEE
Q 009550 19 DCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHA-WECLKDLLLGDWTDGILCSF 85 (532)
Q Consensus 19 ~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~~~~~~~~-~~~l~~la~~~~~~~i~iiv 85 (532)
+...+.+.+.++.|+.-|++.|++ .+|+... +..+.. .+.+.++++.++++++.+.+
T Consensus 81 ~~~~~~~~~~i~~a~~lG~~~v~~----~~g~~~~------~~~~~~~~~~l~~l~~~a~~~gv~l~~ 138 (272)
T 2q02_A 81 EEVVKKTEGLLRDAQGVGARALVL----CPLNDGT------IVPPEVTVEAIKRLSDLFARYDIQGLV 138 (272)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEEE----CCCCSSB------CCCHHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEE----ccCCCch------hHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 345677888899999999998875 1333211 222334 56677777766678876543
No 70
>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=34.08 E-value=49 Score=30.87 Aligned_cols=61 Identities=8% Similarity=-0.001 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhhHHHHHHHHHHhcccCCCeEEEE
Q 009550 19 DCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCSF 85 (532)
Q Consensus 19 ~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~iiv 85 (532)
+..++.+.+.++.|+.-|++.|+++ ..++. +. ...+..+...+.|.++++.++++|+.+.+
T Consensus 80 ~~~~~~~~~~i~~A~~lG~~~v~~~--~~p~~---~~-~~~~~~~~~~~~l~~l~~~a~~~Gv~l~l 140 (281)
T 3u0h_A 80 LRELSLLPDRARLCARLGARSVTAF--LWPSM---DE-EPVRYISQLARRIRQVAVELLPLGMRVGL 140 (281)
T ss_dssp HHHHHTHHHHHHHHHHTTCCEEEEE--CCSEE---SS-CHHHHHHHHHHHHHHHHHHHGGGTCEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEe--ecCCC---CC-cchhhHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 3456677888999999999999853 11111 10 11123344556777888777778876643
No 71
>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A
Probab=31.87 E-value=86 Score=31.79 Aligned_cols=71 Identities=10% Similarity=0.126 Sum_probs=39.7
Q ss_pred HHHHhCCCeEEEEcCC--CCccccc--------------hHHHHHHHHHHHHHcCcEEEEEcC-cCCCCCceeeeccEEE
Q 009550 185 ADLALNGVEVFMNASG--SHHQLRK--------------LDYRIRAFISATHSRGGVYMYSNH-QGCDGGRLYFDGCSCV 247 (532)
Q Consensus 185 ~~la~~GadlIl~psa--s~~~~g~--------------~~~~~~l~~~rA~e~~~~vv~aN~-~G~~~~~~~f~G~S~I 247 (532)
+..+.+|||||+.|=. +++.... .....+.++..|.+++++++..-. .....++..| -++++
T Consensus 106 ~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~ae~~~~~~~~~~l~~lA~~~~i~Iv~G~~e~~~~~~~~~y-Nsa~v 184 (405)
T 2vhh_A 106 KAAAEAGCNIVCTQEAWTMPFAFCTREKFPWCEFAEEAENGPTTKMLAELAKAYNMVIIHSILERDMEHGETIW-NTAVV 184 (405)
T ss_dssp HHHHHTTCSEEECCTTTTSCSCC---------CCCBCTTTSHHHHHHHHHHHHTTCEEEEEEEEEETTTTTEEE-EEEEE
T ss_pred HHHHHCCCCEEEcCCcccccccccccchhhHHHHHhhccCCHHHHHHHHHHHHCCEEEEEeceecccCCCCcEE-EEEEE
Confidence 3455689999999943 2332110 112345677888899998875321 1110012333 34555
Q ss_pred E-eCCeEEEe
Q 009550 248 V-VNGDMIAQ 256 (532)
Q Consensus 248 ~-p~G~ila~ 256 (532)
+ |+|+++..
T Consensus 185 i~p~G~i~~~ 194 (405)
T 2vhh_A 185 ISNSGRYLGK 194 (405)
T ss_dssp ECTTSCEEEE
T ss_pred ECCCCeEEEE
Confidence 5 89998754
No 72
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A
Probab=31.86 E-value=85 Score=29.35 Aligned_cols=68 Identities=12% Similarity=0.219 Sum_probs=38.3
Q ss_pred HHHHhCCCeEEEEcCC--CCccccch------------HHHHHHHHHHHHHcCcEEEEEcCcCCCCCceeeeccEEEE-e
Q 009550 185 ADLALNGVEVFMNASG--SHHQLRKL------------DYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVV-V 249 (532)
Q Consensus 185 ~~la~~GadlIl~psa--s~~~~g~~------------~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~f~G~S~I~-p 249 (532)
+..+.+|||+|+.|=. +.|..... ....+.++..|.+++++++.--.. .. ++..| -+++++ |
T Consensus 28 ~~A~~~gadlvvfPE~~~~gy~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~~~iv~G~~~-~~-~~~~y-Ns~~~i~~ 104 (262)
T 3ivz_A 28 KEASKQGAQLVVLPELFDTGYNFETREEVFEIAQKIPEGETTTFLMDVARDTGVYIVAGTAE-KD-GDVLY-NSAVVVGP 104 (262)
T ss_dssp HHHHHTTCSEEECCTTTTTCSCCSCHHHHHHHCBCTTTSHHHHHHHHHHHHHCCEEEEEEEE-EE-TTEEE-EEEEEEET
T ss_pred HHHHHCCCCEEEeCCCcccCCCCCCHHHHHHhcCccCCCHHHHHHHHHHHHcCcEEEEeEEE-ee-CCcEE-EEEEEEcC
Confidence 3445789999999933 22322210 123456778888999887654111 11 22333 344555 8
Q ss_pred CCeEEEe
Q 009550 250 NGDMIAQ 256 (532)
Q Consensus 250 ~G~ila~ 256 (532)
+| ++..
T Consensus 105 ~G-~~~~ 110 (262)
T 3ivz_A 105 RG-FIGK 110 (262)
T ss_dssp TE-EEEE
T ss_pred Ce-eEEE
Confidence 99 6654
No 73
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP}
Probab=31.13 E-value=85 Score=29.84 Aligned_cols=70 Identities=13% Similarity=0.101 Sum_probs=39.5
Q ss_pred HHHHhCCCeEEEEcCCC--Cccccc---------hHHHHHHHHHHHHHcCcEEEEEcCcCCCCCceeeeccEEEE-eCCe
Q 009550 185 ADLALNGVEVFMNASGS--HHQLRK---------LDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVV-VNGD 252 (532)
Q Consensus 185 ~~la~~GadlIl~psas--~~~~g~---------~~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~f~G~S~I~-p~G~ 252 (532)
+..+.+|||+|+.|=.+ .|.... .....+.++..|.+++++++.-... ...++..| -+++++ |+|+
T Consensus 47 ~~A~~~gadlvvfPE~~l~gy~~~d~~~~~a~~~~~~~~~~l~~~a~~~~i~iv~G~~~-~~~~~~~y-Ns~~~i~~~G~ 124 (283)
T 3hkx_A 47 ARASEQGAQLLLTPELFGFGYVPSQICAQVSAEQVDAARSRLRGIARDRGIALVWSLPG-PEGPEQRG-ITAELADEHGE 124 (283)
T ss_dssp HHHHHTTCSEEECCTTGGGCSCHHHHHHHCCHHHHHHHHHHHHHHHHHTTSEEEECCBC-SSCTTTCC-BEEEEECTTSC
T ss_pred HHHHHCCCCEEEcCCCcccCCChHHHHHHhccccCCHHHHHHHHHHHHhCCEEEEEEEE-EcCCCCEE-EEEEEEcCCCc
Confidence 34456899999999432 222111 0123456777888999887754321 11112223 345556 8999
Q ss_pred EEEe
Q 009550 253 MIAQ 256 (532)
Q Consensus 253 ila~ 256 (532)
++..
T Consensus 125 i~~~ 128 (283)
T 3hkx_A 125 VLAS 128 (283)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8754
No 74
>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus}
Probab=29.84 E-value=68 Score=30.25 Aligned_cols=69 Identities=7% Similarity=0.060 Sum_probs=38.4
Q ss_pred HHHhCCCeEEEEcCCC--Cccccch--------HHHHHHHHHHHHHcCcEEEEEcCcCCCCCceeeeccEEEE-eCCeEE
Q 009550 186 DLALNGVEVFMNASGS--HHQLRKL--------DYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVV-VNGDMI 254 (532)
Q Consensus 186 ~la~~GadlIl~psas--~~~~g~~--------~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~f~G~S~I~-p~G~il 254 (532)
..+.+|||+|+.|=.+ ++..... ....+.++..|.+++++++.-...-.. ++..| -+++++ |+|+++
T Consensus 30 ~a~~~gadlvv~PE~~~~gy~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~G~~~~~~-~~~~y-Ns~~~i~~~G~i~ 107 (276)
T 2w1v_A 30 EAAKQGANIVSLPECFNSPYGTTYFPDYAEKIPGESTQKLSEVAKESSIYLIGGSIPEED-AGKLY-NTCSVFGPDGSLL 107 (276)
T ss_dssp HHHHTTCSEEECCTTTTSCCSTTTHHHHCBCSSSHHHHHHHHHHHHHTSEEECCCEEEEE-TTEEE-EEEEEECTTSCEE
T ss_pred HHHHCCCCEEEcCCCcccCCCHHHHHHHhccCCCHHHHHHHHHHHHcCeEEEecceeecC-CCcEE-EEEEEECCCCcEE
Confidence 4456899999999432 3322111 123456777888999887642110001 12233 335555 899987
Q ss_pred Ee
Q 009550 255 AQ 256 (532)
Q Consensus 255 a~ 256 (532)
..
T Consensus 108 ~~ 109 (276)
T 2w1v_A 108 VK 109 (276)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 75
>3cny_A Inositol catabolism protein IOLE; xylose isomerase-like TIM barrel, structural genomics, joint for structural genomics, JCSG; 1.85A {Lactobacillus plantarum WCFS1}
Probab=29.59 E-value=94 Score=29.20 Aligned_cols=67 Identities=9% Similarity=-0.033 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEcCCC--CcCCCCCCcc----cc-cchhhhHHHHHHHHHHhcccCCCeEEEE
Q 009550 19 DCNLKNIKESIGRAKEAGAVIRLGPEL--EITGYGCEDH----FL-ELDTVTHAWECLKDLLLGDWTDGILCSF 85 (532)
Q Consensus 19 ~~N~~~i~~~i~~A~~~gadLvVfPEl--~ltGy~~~d~----~~-~~~~~~~~~~~l~~la~~~~~~~i~iiv 85 (532)
+..++.+.+.++.|+.-|++.|+++.. +..|...... .. ..+..+...+.+.++++.++++++.+.+
T Consensus 86 ~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~l 159 (301)
T 3cny_A 86 EKASEAFEKHCQYLKAINAPVAVVSEQTYTIQRSDTANIFKDKPYFTDKEWDEVCKGLNHYGEIAAKYGLKVAY 159 (301)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEECTTCCTTCSSCCTTTCCCCCCHHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEecCCCccccCcccCCcccccccCcHHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 445677888999999999998887642 1113321110 00 2223344556677777777778876543
No 76
>1tz9_A Mannonate dehydratase; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium; 2.90A {Enterococcus faecalis} SCOP: c.1.15.6
Probab=27.72 E-value=1.7e+02 Score=28.73 Aligned_cols=39 Identities=10% Similarity=0.060 Sum_probs=28.5
Q ss_pred eEEEEEeccCC-------CCCHHHHHHHHHHHHHHHHHCCCeEEEc
Q 009550 4 LKVATCNLNNW-------ALDFDCNLKNIKESIGRAKEAGAVIRLG 42 (532)
Q Consensus 4 ~rVAlvQ~~~~-------~~d~~~N~~~i~~~i~~A~~~gadLvVf 42 (532)
+++..+..... ..+.+..++.+.+.++.|++.|+++|++
T Consensus 69 L~i~~~~~~~~~~~~~~~~~~r~~~i~~~~~~i~~a~~lG~~~v~~ 114 (367)
T 1tz9_A 69 LALLGIESVAIHDAIKAGTDQRDHYIDNYRQTLRNLGKCGISLVCY 114 (367)
T ss_dssp CEEEEECSCCCCHHHHHTCSTHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEecCCCcHHHhcCCcCHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 56665554332 2345677888889999999999999998
No 77
>2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose 3-epimeras tagatose 3-epimerase, isomerase; 2.20A {Thermotoga maritima}
Probab=25.86 E-value=1.8e+02 Score=27.20 Aligned_cols=55 Identities=18% Similarity=0.070 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhhHHHHHHHHHHhcccC
Q 009550 19 DCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWT 78 (532)
Q Consensus 19 ~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~ 78 (532)
+..++.+.+.++.|+.-|++.|+.| ..|+... ....+..+...+.+.++++.+++
T Consensus 109 ~~~~~~~~~~i~~A~~lG~~~v~~~---~~g~~~~--~~~~~~~~~~~~~l~~l~~~a~~ 163 (290)
T 2zvr_A 109 KKAIERVVKHTEVAGMFGALVIIGL---VRGRREG--RSYEETEELFIESMKRLLELTEH 163 (290)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEESG---GGCCCTT--SCHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEec---CCCCCCC--cCHHHHHHHHHHHHHHHHHHhcc
Confidence 5567888899999999999999833 2455211 11223344556678888877654
No 78
>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*
Probab=24.96 E-value=1.3e+02 Score=28.06 Aligned_cols=64 Identities=6% Similarity=-0.051 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCC--CCcccccchhhhHHHHHHHHHHhcccCCCeEEE
Q 009550 19 DCNLKNIKESIGRAKEAGAVIRLGPELEITGYG--CEDHFLELDTVTHAWECLKDLLLGDWTDGILCS 84 (532)
Q Consensus 19 ~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~--~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~ii 84 (532)
+..++.+.+.++.|+.-|++.|+.+ ..+|++ ........+..+...+.+.++++.++++|+.+.
T Consensus 84 ~~~~~~~~~~i~~a~~lG~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~ 149 (294)
T 3vni_A 84 KNAKAFYTDLLKRLYKLDVHLIGGA--LYSYWPIDYTKTIDKKGDWERSVESVREVAKVAEACGVDFC 149 (294)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEES--TTSCSSCCTTSCCCHHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCeeecc--ccCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 3567778888999999999999742 122332 111111223344556677778777777887654
No 79
>1xla_A D-xylose isomerase; isomerase(intramolecular oxidoreductase); 2.30A {Arthrobacter SP} SCOP: c.1.15.3 PDB: 1die_A* 1did_A 1xlb_A 1xlc_A* 1xld_A* 1xle_A 1xlf_A* 1xlg_A* 1xlh_A 1xli_A* 1xlj_A* 1xlk_A 1xll_A 1xlm_A* 4xia_A* 5xia_A*
Probab=24.41 E-value=98 Score=31.01 Aligned_cols=63 Identities=14% Similarity=-0.014 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCc---ccccchhhhHHHHHHHHHHhcccCCC--eEEEE
Q 009550 19 DCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCED---HFLELDTVTHAWECLKDLLLGDWTDG--ILCSF 85 (532)
Q Consensus 19 ~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d---~~~~~~~~~~~~~~l~~la~~~~~~~--i~iiv 85 (532)
+..++.+.+.++.|+.-|++.|++. +|+...+ ........+...+.+.++++.++++| +.+.+
T Consensus 112 ~~~i~~~~~~i~~A~~LGa~~vvv~----~G~~g~~~~~~~~~~~~~~~~~e~L~~l~~~A~~~G~~v~l~l 179 (394)
T 1xla_A 112 RFALAKVLHNIDLAAEMGAETFVMW----GGREGSEYDGSKDLAAALDRMREGVDTAAGYIKDKGYNLRIAL 179 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEC----CTTCEESSGGGCCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEC----CCCCccccccccCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 4567888999999999999988762 2322100 01112233445566777777666677 65543
No 80
>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori} PDB: 2dyv_A 2e2l_A 2e2k_A
Probab=24.02 E-value=1.4e+02 Score=29.14 Aligned_cols=66 Identities=14% Similarity=0.173 Sum_probs=36.2
Q ss_pred CCCeEEEEcCC--CCccccc----------hHHHHHHHHHHHHHcCcEEEEEcC-cCCCCCceeeeccEEEE-eCCeEEE
Q 009550 190 NGVEVFMNASG--SHHQLRK----------LDYRIRAFISATHSRGGVYMYSNH-QGCDGGRLYFDGCSCVV-VNGDMIA 255 (532)
Q Consensus 190 ~GadlIl~psa--s~~~~g~----------~~~~~~l~~~rA~e~~~~vv~aN~-~G~~~~~~~f~G~S~I~-p~G~ila 255 (532)
+|||||+.|=. +.+.... .....+.++..|.+++++++..-. ...++....| -+++++ |+|+++.
T Consensus 51 ~gadLVVfPE~~l~G~~~~~~~~~~~a~~~~~~~~~~l~~~a~~~~i~iv~G~~e~~~~~~~~~y-Nsa~vi~p~G~i~~ 129 (334)
T 2dyu_A 51 PGVELIIFPEYSTQGLNTAKWLSEEFLLDVPGKETELYAKACKEAKVYGVFSIMERNPDSNKNPY-NTAIIIDPQGEIIL 129 (334)
T ss_dssp TTEEEEECCTTTTTCCCTTTTTSGGGCBCSSSHHHHHHHHHHHHHTCEEEEEEEECCSSTTSCCE-EEEEEECTTSCEEE
T ss_pred CCCcEEEcCCCccccCCCChhHHHHhhccCCCHHHHHHHHHHHHhCeEEEEeeEEECCCCCceeE-EEEEEECCCCCEEE
Confidence 69999999933 2221111 112456677888899998765322 1111011133 334555 8999875
Q ss_pred e
Q 009550 256 Q 256 (532)
Q Consensus 256 ~ 256 (532)
.
T Consensus 130 ~ 130 (334)
T 2dyu_A 130 K 130 (334)
T ss_dssp E
T ss_pred E
Confidence 4
No 81
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=23.69 E-value=54 Score=29.32 Aligned_cols=72 Identities=13% Similarity=-0.051 Sum_probs=34.8
Q ss_pred CCc--eEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhhHHHHHHHHHHhcccC
Q 009550 1 MRL--LKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWT 78 (532)
Q Consensus 1 m~~--~rVAlvQ~~~~~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~ 78 (532)
|+. |||+.+- -.-++. ..+.++++.+.+.++|+||+- +|+.......+...+.++.|.+. .
T Consensus 1 ~~~~~mri~~iS--D~H~~~----~~~~~~~~~~~~~~~D~vi~~---------GDl~~~~~~~~~~~~~~~~l~~~--~ 63 (228)
T 1uf3_A 1 MRRTVRYILATS--NPMGDL----EALEKFVKLAPDTGADAIALI---------GNLMPKAAKSRDYAAFFRILSEA--H 63 (228)
T ss_dssp CCCCCCEEEEEE--CCTTCH----HHHHHHHTHHHHHTCSEEEEE---------SCSSCTTCCHHHHHHHHHHHGGG--C
T ss_pred CccceEEEEEEe--eccCCH----HHHHHHHHHHhhcCCCEEEEC---------CCCCCCCCCHHHHHHHHHHHHhc--C
Confidence 654 5665543 223343 233344444444578988753 33332211112233456666543 2
Q ss_pred CCeEEEEceee
Q 009550 79 DGILCSFGMPV 89 (532)
Q Consensus 79 ~~i~iivG~~~ 89 (532)
..++++.|.-.
T Consensus 64 ~pv~~v~GNHD 74 (228)
T 1uf3_A 64 LPTAYVPGPQD 74 (228)
T ss_dssp SCEEEECCTTS
T ss_pred CcEEEECCCCC
Confidence 35777778643
No 82
>2zds_A Putative DNA-binding protein; TIM-barrel fold, structural genomics, NPPSFA; 2.30A {Streptomyces coelicolor}
Probab=23.54 E-value=90 Score=30.03 Aligned_cols=62 Identities=16% Similarity=0.070 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcc---c------ccchhhhHHHHHHHHHHhcccCCCeEEE
Q 009550 19 DCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDH---F------LELDTVTHAWECLKDLLLGDWTDGILCS 84 (532)
Q Consensus 19 ~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGy~~~d~---~------~~~~~~~~~~~~l~~la~~~~~~~i~ii 84 (532)
+..++.+.+.++.|+.-|++.|+++ +|....+. + ...+..+...+.+.++++.++++|+.+.
T Consensus 107 ~~~~~~~~~~i~~A~~lGa~~v~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~ 177 (340)
T 2zds_A 107 QRAAAEIKDTARAAARLGVDTVIGF----TGSAIWHLVAMFPPAPESMIERGYQDFADRWNPILDVFDAEGVRFA 177 (340)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEEEC----CCCSSGGGTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEe----cCCcCcccccccCCCcccchHHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 4457778888999999999988764 23321110 0 0112223345567777776666787654
No 83
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1
Probab=21.07 E-value=2.2e+02 Score=28.72 Aligned_cols=72 Identities=4% Similarity=-0.095 Sum_probs=39.6
Q ss_pred HHHHhCCCeEEEEcCCCCccccch-----------HHHHHHHHHHHHHcCcEEEEEcCc--CCCCCceeeeccEEEE-eC
Q 009550 185 ADLALNGVEVFMNASGSHHQLRKL-----------DYRIRAFISATHSRGGVYMYSNHQ--GCDGGRLYFDGCSCVV-VN 250 (532)
Q Consensus 185 ~~la~~GadlIl~psas~~~~g~~-----------~~~~~l~~~rA~e~~~~vv~aN~~--G~~~~~~~f~G~S~I~-p~ 250 (532)
+..+.+|||+|+.|=.+.+..... ....+.++..|.+++++++.-... -...++..| -+++++ |+
T Consensus 40 ~~A~~~gadlvv~PE~~~~~~~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~G~~~~~e~~~~~~~y-Ns~~~i~~~ 118 (440)
T 1ems_A 40 ERAGEKKCEMVFLPECFDFIGLNKNEQIDLAMATDCEYMEKYRELARKHNIWLSLGGLHHKDPSDAAHPW-NTHLIIDSD 118 (440)
T ss_dssp HHHHHTTCSEEEECTTCSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTEEEEEE-EEEEEECTT
T ss_pred HHHHHCCCCEEECCCcccccCcchhHHHHhhccCCCHHHHHHHHHHHHcCeEEEeccccccccCCCCcEE-EEEEEECCC
Confidence 344568999999995443211100 112345677888999988643211 001012233 345555 89
Q ss_pred CeEEEee
Q 009550 251 GDMIAQG 257 (532)
Q Consensus 251 G~ila~~ 257 (532)
|+++..=
T Consensus 119 G~i~~~y 125 (440)
T 1ems_A 119 GVTRAEY 125 (440)
T ss_dssp SCEEEEE
T ss_pred CcEEEEE
Confidence 9987643
No 84
>1fs5_A Glucosamine-6-phosphate deaminase; allosteric enzyme, entropic effects, aldose-ketose isomerase multiple conformers, isomerase; HET: 16G TLA; 1.73A {Escherichia coli} SCOP: c.124.1.1 PDB: 1cd5_A 1fqo_A* 1frz_A* 1dea_A* 1fs6_A 1fsf_A 1hor_A* 1hot_A* 2wu1_A* 1jt9_A
Probab=20.96 E-value=70 Score=30.20 Aligned_cols=34 Identities=15% Similarity=0.211 Sum_probs=26.6
Q ss_pred CcHHHHhcchhhHHHHHHHHh---CCCeEEEeccCch
Q 009550 326 SPEEEIAFGPGCWLWDYLRRS---GASGFLLPLSGGA 359 (532)
Q Consensus 326 ~~~~~~~~~~~~~L~~~l~~~---~~~~~~l~lSGGi 359 (532)
...+++..+.+..|.+.++.. ...+++||||||-
T Consensus 7 ~~~~~l~~~aA~~l~~~l~~~~~~~~~~~~i~lsgGs 43 (266)
T 1fs5_A 7 TTAEQVGKWAARHIVNRINAFKPTADRPFVLGLPTGG 43 (266)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHCCCSSSCEEEEECCSS
T ss_pred CCHHHHHHHHHHHHHHHHHHhhhcccCceEEEEcCCC
Confidence 445788888888999999873 2347999999994
No 85
>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A
Probab=20.62 E-value=73 Score=30.40 Aligned_cols=70 Identities=16% Similarity=0.183 Sum_probs=37.4
Q ss_pred HHHhCCCeEEEEcCC--CCcccc----c------------hHHHHHHHHHHHHHcCcEEEEEcC-cCCCCCc-eeeeccE
Q 009550 186 DLALNGVEVFMNASG--SHHQLR----K------------LDYRIRAFISATHSRGGVYMYSNH-QGCDGGR-LYFDGCS 245 (532)
Q Consensus 186 ~la~~GadlIl~psa--s~~~~g----~------------~~~~~~l~~~rA~e~~~~vv~aN~-~G~~~~~-~~f~G~S 245 (532)
..+.+|||+|+.|=. +.+... . .....+.++..|.+++++++.--. ....+.. ..| =++
T Consensus 33 ~a~~~gadlvv~PE~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~G~~~~~~~~~~~~~y-Ns~ 111 (303)
T 1uf5_A 33 KAASRGANFIVFPELALTTFFPRWHFTDEAELDSFYETEMPGPVVRPLFEKAAELGIGFNLGYAELVVEGGVKRRF-NTS 111 (303)
T ss_dssp HHHHTTCSEEECCTTTTSCCGGGSCCCCHHHHHTTSBSSSSCTTTHHHHHHHHHHTCEEEEEEEEEEEETTEEEEE-EEE
T ss_pred HHHhcCCCEEEeccccccCCCccccccchhhhHHHHhhcCCCHHHHHHHHHHHHhCeEEEEeeeEecCCCCCccee-eEE
Confidence 445689999999933 222111 0 112235577788889998765321 1001010 233 334
Q ss_pred EEE-eCCeEEEe
Q 009550 246 CVV-VNGDMIAQ 256 (532)
Q Consensus 246 ~I~-p~G~ila~ 256 (532)
+++ |+|+++..
T Consensus 112 ~~i~~~G~i~~~ 123 (303)
T 1uf5_A 112 ILVDKSGKIVGK 123 (303)
T ss_dssp EEECTTSCEEEE
T ss_pred EEECCCCCEeee
Confidence 555 88987753
Done!