BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009551
(532 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AUA|A Chain A, Phosphatidylinositol Transfer Protein Sec14p From
Saccharomyces Cerevisiae
Length = 296
Score = 184 bits (467), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/237 (38%), Positives = 144/237 (60%), Gaps = 2/237 (0%)
Query: 18 ATSLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGYHGVD 77
+T LRFL+ARKFD+ AK M+ +WRK++G DTI++DF + E + +YP YH D
Sbjct: 53 STLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYDEKPLIAKFYPQYYHKTD 112
Query: 78 KEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTS 137
K+GRPVY E LG V+ +++ +VT+ +R ++ V +E + PAC+ AA +++S +
Sbjct: 113 KDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCT 172
Query: 138 ILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDP 197
I+D++G+ + + + + + I + YPE + + +IINA GF + K FLDP
Sbjct: 173 IMDLKGISISS-AYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDP 231
Query: 198 KTTSKIHVLGNKYQSKLLEIIDARELPEFLGGTCNCAD-QGGCLRSDKGPWQNPEIL 253
T SKI +LG+ YQ +LL+ I A LP GG + +GG SD GPW++P+ +
Sbjct: 232 VTVSKIFILGSSYQKELLKQIPAENLPVKFGGKSEVDESKGGLYLSDIGPWRDPKYI 288
>pdb|3B74|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylethanolamine
pdb|3B7N|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylinositol
pdb|3B7Q|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Q|B Chain B, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Z|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine Or Phosphatidylinositol
Length = 320
Score = 167 bits (424), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 93/245 (37%), Positives = 146/245 (59%), Gaps = 12/245 (4%)
Query: 18 ATSLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEF------KEINEVLSYYPH 71
+T LRFL+ARKFDI+ + M+ E +WR+E+G +TI+ED+E KE ++ YP
Sbjct: 62 STLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKEAEDKERIKLAKMYPQ 121
Query: 72 GYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRH 131
YH VDK+GRP+Y E LG ++ K+ ++TT + +R V+ +E + PAC+ A
Sbjct: 122 YYHHVDKDGRPLYFEELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYL 181
Query: 132 IDSSTSILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTV 191
I++S ++LD++G+ L N + + I + I + YPE + + +II++ GF ++ V
Sbjct: 182 IETSCTVLDLKGISLSN-AYHVLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMV 240
Query: 192 KSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEFLGGTC---NCADQGGCLRSDKGPWQ 248
K FLDP T SKI +LG+ Y+ +LL+ I LP GGT N D+ SD GPW+
Sbjct: 241 KPFLDPVTVSKIFILGSSYKKELLKQIPIENLPVKYGGTSVLHNPNDK--FYYSDIGPWR 298
Query: 249 NPEIL 253
+P +
Sbjct: 299 DPRYI 303
>pdb|3Q8G|A Chain A, Resurrection Of A Functional Phosphatidylinositol Transfer
Protein From A Pseudo-Sec14 Scaffold By Directed
Evolution
Length = 320
Score = 166 bits (419), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 145/245 (59%), Gaps = 12/245 (4%)
Query: 18 ATSLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEF------KEINEVLSYYPH 71
+T LRFL+ARKFDI+ + M+ E +WR+E+G +TI+ED+E KE ++ YP
Sbjct: 62 STLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKEAEDKERIKLAKMYPQ 121
Query: 72 GYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRH 131
YH VDK+GRP+Y LG ++ K+ ++TT + +R V+ +E + PAC+ A
Sbjct: 122 YYHHVDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYL 181
Query: 132 IDSSTSILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTV 191
I++S ++LD++G+ L N + + I + I + YPE + + +II++ GF ++ V
Sbjct: 182 IETSCTVLDLKGISLSN-AYHVLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMV 240
Query: 192 KSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEFLGGTC---NCADQGGCLRSDKGPWQ 248
K FLDP T SKI +LG+ Y+ +LL+ I LP GGT N D+ SD GPW+
Sbjct: 241 KPFLDPVTVSKIFILGSSYKKELLKQIPIENLPVKYGGTSVLHNPNDK--FYYSDIGPWR 298
Query: 249 NPEIL 253
+P +
Sbjct: 299 DPRYI 303
>pdb|1OLM|A Chain A, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
pdb|1OLM|C Chain C, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 112/218 (51%), Gaps = 10/218 (4%)
Query: 21 LRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGYHGVDKEG 80
LR+L+AR FD+ K++ M + +++RK+ +D I+ ++ + Y G G D +G
Sbjct: 39 LRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIIS---WQPPEVIQQYLSGGMCGYDLDG 95
Query: 81 RPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPAC---TIAAKRHIDSSTS 137
PV+ + +G +D+ L+ + +R ++ E + C T R +++ T
Sbjct: 96 CPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECE----LLLQECAHQTTKLGRKVETITI 151
Query: 138 ILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDP 197
I D +G+GLK+ K A E + +NYPETL ++F++ A F + +N +K FL
Sbjct: 152 IYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSE 211
Query: 198 KTTSKIHVLGNKYQSKLLEIIDARELPEFLGGTCNCAD 235
T KI VLG ++ LL+ I ++P GGT D
Sbjct: 212 DTRKKIMVLGANWKEVLLKHISPDQVPVEYGGTMTDPD 249
>pdb|1OLM|E Chain E, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 112/218 (51%), Gaps = 10/218 (4%)
Query: 21 LRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGYHGVDKEG 80
LR+L+AR FD+ K++ M + +++RK+ +D I+ ++ + Y G G D +G
Sbjct: 39 LRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIIS---WQPPEVIQQYLSGGMCGYDLDG 95
Query: 81 RPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPAC---TIAAKRHIDSSTS 137
PV+ + +G +D+ L+ + +R ++ E + C T R +++ T
Sbjct: 96 CPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECE----LLLQECAHQTTKLGRKVETITI 151
Query: 138 ILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDP 197
I D +G+GLK+ K A E + +NYPETL ++F++ A F + +N +K FL
Sbjct: 152 IYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSE 211
Query: 198 KTTSKIHVLGNKYQSKLLEIIDARELPEFLGGTCNCAD 235
T KI VLG ++ LL+ I ++P GGT D
Sbjct: 212 DTRKKIMVLGANWKEVLLKHISPDQVPVEYGGTMTDPD 249
>pdb|1O6U|A Chain A, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|C Chain C, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|E Chain E, The Crystal Structure Of Human Supernatant Protein Factor
Length = 403
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 108/213 (50%), Gaps = 10/213 (4%)
Query: 21 LRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGYHGVDKEG 80
LR+L+AR FD+ K++ + +++RK+ +D I+ ++ + Y G G D +G
Sbjct: 39 LRWLRARSFDLQKSEAXLRKHVEFRKQKDIDNIIS---WQPPEVIQQYLSGGXCGYDLDG 95
Query: 81 RPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPAC---TIAAKRHIDSSTS 137
PV+ + +G +D+ L+ + +R + E + C T R +++ T
Sbjct: 96 CPVWYDIIGPLDAKGLLFSASKQDLLRTKXRECE----LLLQECAHQTTKLGRKVETITI 151
Query: 138 ILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDP 197
I D +G+GLK+ K A E +NYPETL ++F++ A F + +N +K FL
Sbjct: 152 IYDCEGLGLKHLWKPAVEAYGEFLCXFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSE 211
Query: 198 KTTSKIHVLGNKYQSKLLEIIDARELPEFLGGT 230
T KI VLG ++ LL+ I ++P GGT
Sbjct: 212 DTRKKIXVLGANWKEVLLKHISPDQVPVEYGGT 244
>pdb|1OIP|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-tocopherol Transfer Protein
pdb|1OIZ|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
pdb|1OIZ|B Chain B, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
Length = 278
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 85/200 (42%), Gaps = 21/200 (10%)
Query: 21 LRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGYHGV---- 76
LRFL+AR FD+D A + +WR E I D + I +L GYHGV
Sbjct: 53 LRFLRARDFDLDLAWRLLKNYYKWRAE--CPEISADLHPRSIIGLLKA---GYHGVLRSR 107
Query: 77 DKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSST 136
D G V I R+ D Y + V V+ + +R +
Sbjct: 108 DPTGSKVLIYRIAHWDPK------VFTAYDVFRVSLITSELIVQ----EVETQR--NGIK 155
Query: 137 SILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLD 196
+I D++G + + + ++ + D++P + + +IN F +++ +K FL
Sbjct: 156 AIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLT 215
Query: 197 PKTTSKIHVLGNKYQSKLLE 216
K +IH+ GN Y+ LL+
Sbjct: 216 EKIKERIHMHGNNYKQSLLQ 235
>pdb|1R5L|A Chain A, Crystal Structure Of Human Alpha-tocopherol Transfer
Protein Bound To Its Ligand
Length = 262
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 84/200 (42%), Gaps = 21/200 (10%)
Query: 21 LRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGYHGV---- 76
LRFL+AR FD+D A + +WR E I D + I +L GYHGV
Sbjct: 37 LRFLRARDFDLDLAWRLLKNYYKWRAE--CPEISADLHPRSIIGLLKA---GYHGVLRSR 91
Query: 77 DKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSST 136
D G V I R+ D Y + V V+ + +R +
Sbjct: 92 DPTGSKVLIYRIAHWDPK------VFTAYDVFRVSLITSELIVQ----EVETQR--NGIK 139
Query: 137 SILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLD 196
+I D++G + + + ++ + D++P + + +IN F +++ +K FL
Sbjct: 140 AIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSXIKPFLT 199
Query: 197 PKTTSKIHVLGNKYQSKLLE 216
K +IH GN Y+ LL+
Sbjct: 200 EKIKERIHXHGNNYKQSLLQ 219
>pdb|3HY5|A Chain A, Crystal Structure Of Cralbp
Length = 316
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 94/235 (40%), Gaps = 22/235 (9%)
Query: 21 LRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGYHGV---- 76
LRF++ARKF++ +A + + +R ++ E F+ V GY GV
Sbjct: 96 LRFIRARKFNVGRAYELLRGYVNFRLQYP-----ELFDSLSPEAVRCTIEAGYPGVLSSR 150
Query: 77 DKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSST 136
DK GR V + + S ++ T D ++ + EK ++ I I++
Sbjct: 151 DKYGRVVMLFNIENWQSQEI----TFDEILQAYCFILEK--LLENEETQINGFCIIENFK 204
Query: 137 SILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLD 196
Q L+ + + R+++ LQ D++P + I+ F +N VK FL
Sbjct: 205 GFTMQQAASLR--TSDLRKMVDMLQ----DSFPARFKAIHFIHQPWYFTTTYNVVKPFLK 258
Query: 197 PKTTSKIHVLGNKYQSKLLEIIDARELPEFLGGTCNCADQGGCLRSDKGPWQNPE 251
K ++ V G+ S + ID LP GGT D GP E
Sbjct: 259 SKLLERVFVHGDDL-SGFYQEIDENILPSDFGGTLPKYDGKAVAEQLFGPQAQAE 312
>pdb|3HX3|A Chain A, Crystal Structure Of Cralbp Mutant R234w
Length = 316
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 88/214 (41%), Gaps = 22/214 (10%)
Query: 21 LRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGYHGV---- 76
LRF++ARKF++ +A + + +R ++ E F+ V GY GV
Sbjct: 96 LRFIRARKFNVGRAYELLRGYVNFRLQYP-----ELFDSLSPEAVRCTIEAGYPGVLSSR 150
Query: 77 DKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSST 136
DK GR V + + N Q T D ++ + EK ++ I I++
Sbjct: 151 DKYGRVVXLFNI----ENWQSQEITFDEILQAYCFILEK--LLENEETQINGFCIIENFK 204
Query: 137 SILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLD 196
Q L+ + + R+ + LQ D++P + I+ F +N VK FL
Sbjct: 205 GFTXQQAASLR--TSDLRKXVDXLQ----DSFPAWFKAIHFIHQPWYFTTTYNVVKPFLK 258
Query: 197 PKTTSKIHVLGNKYQSKLLEIIDARELPEFLGGT 230
K ++ V G+ S + ID LP GGT
Sbjct: 259 SKLLERVFVHGDDL-SGFYQEIDENILPSDFGGT 291
>pdb|1H8T|C Chain C, Echovirus 11
pdb|1UPN|C Chain C, Complex Of Echovirus Type 12 With Domains 3 And 4 Of Its
Receptor Decay Accelerating Factor (Cd55) By Cryo
Electron Microscopy At 16 A
pdb|2C8I|C Chain C, Complex Of Echovirus Type 12 With Domains 1, 2, 3 And 4 Of
Its Receptor Decay Accelerating Factor (Cd55) By Cryo
Electron Microscopy At 16 A
Length = 238
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 13 PCFNVATSLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPH 71
P NVA +L + + + H +++ ++ + G+D + F+ + E+L+YY H
Sbjct: 54 PVNNVAGNLETMDIYRIPVQSGNHQSSQVFGFQVQPGLDGV---FKHTLLGEILNYYAH 109
>pdb|3G02|A Chain A, Structure Of Enantioselective Mutant Of Epoxide Hydrolase
From Aspergillus Niger Generated By Directed Evolution
pdb|3G02|B Chain B, Structure Of Enantioselective Mutant Of Epoxide Hydrolase
From Aspergillus Niger Generated By Directed Evolution
Length = 408
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Query: 404 AYRVTHRIPETSTGHDLNISEVAVDANEKEEF----RPPSPSPSLTEVD----LLSSVTK 455
AY + H ++ GH L+ S +A+ A E++ P PS ++ E+ L S +
Sbjct: 251 AYAMEHSTRPSTIGHVLSSSPIALLAWIGEKYLQWVDKPLPSETILEMVSLYWLTESFPR 310
Query: 456 RLSELEEKVDTLQAKPSEMPYEKEELLH 483
+ E V T A PY+KE +H
Sbjct: 311 AIHTYREWVPTASAPNGATPYQKELYIH 338
>pdb|4FMM|A Chain A, Dimeric Sec14 Family Homolog 3 From Saccharomyces
Cerevisiae Presents Some Novel Features Of Structure
That Lead To A Surprising "dimer- Monomer" State Change
Induced By Substrate Binding
pdb|4FMM|B Chain B, Dimeric Sec14 Family Homolog 3 From Saccharomyces
Cerevisiae Presents Some Novel Features Of Structure
That Lead To A Surprising "dimer- Monomer" State Change
Induced By Substrate Binding
Length = 360
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 95/229 (41%), Gaps = 41/229 (17%)
Query: 14 CFNVATSLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHG- 72
CF LR+L+A K+ + L WR+EFG+ + E+ K ++++
Sbjct: 89 CF-----LRYLRATKWVLKDCIDRITMTLAWRREFGISHLGEEHGDKITADLVAVENESG 143
Query: 73 ---YHGVDKEGRPVYIERLGKVD---SNKLMQ--VTTMDRYIRYHVQGFEK-AFAVKFPA 123
G + + RP+ + G+ + S++ +Q V ++R I + G + A + F
Sbjct: 144 KQVILGYENDARPILYLKPGRQNTKTSHRQVQHLVFMLERVIDFMPAGQDSLALLIDFKD 203
Query: 124 CTIAAKRHIDSSTSILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPG 183
K + ++ I + GVG +E++ LQ +YPE L + + N
Sbjct: 204 YPDVPK--VPGNSKIPPI-GVG--------KEVLHILQT----HYPERLGKALLTNIP-- 246
Query: 184 FRLLWNTVK---SFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEFLGG 229
L W +K F+DP T K+ + ++ + EL GG
Sbjct: 247 -WLAWTFLKLIHPFIDPLTREKL-----VFDEPFVKYVPKNELDSLYGG 289
>pdb|3U7I|A Chain A, The Crystal Structure Of Fmn-Dependent Nadh-Azoreductase 1
(Gbaa0966) From Bacillus Anthracis Str. Ames Ancestor
pdb|3U7I|B Chain B, The Crystal Structure Of Fmn-Dependent Nadh-Azoreductase 1
(Gbaa0966) From Bacillus Anthracis Str. Ames Ancestor
pdb|3U7I|C Chain C, The Crystal Structure Of Fmn-Dependent Nadh-Azoreductase 1
(Gbaa0966) From Bacillus Anthracis Str. Ames Ancestor
pdb|3U7I|D Chain D, The Crystal Structure Of Fmn-Dependent Nadh-Azoreductase 1
(Gbaa0966) From Bacillus Anthracis Str. Ames Ancestor
Length = 223
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 339 YDEYVPMVDKAVDSSWKKQ 357
YD+ VP +DK V S+W+KQ
Sbjct: 50 YDDVVPXIDKTVLSAWEKQ 68
>pdb|2ICE|A Chain A, Crig Bound To C3c
pdb|2ICE|D Chain D, Crig Bound To C3c
pdb|2ICF|A Chain A, Crig Bound To C3b
Length = 642
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 45/120 (37%), Gaps = 18/120 (15%)
Query: 409 HRIPETSTGHDLNISEVAVDANEKEEFRP-PSPSP-SLTEVDLLSSVTKRLSELEEKVDT 466
+R+P G D S D K PS P S+T + + + LSE E+ T
Sbjct: 363 YRVPVAVQGEDTVQSLTQGDGVAKLSINTHPSQKPLSIT----VRTKKQELSEAEQATRT 418
Query: 467 LQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEAKFR 526
+QA P LH +V R + E + + L +DR EAK R
Sbjct: 419 MQALPYSTVGNSNNYLHLSVLRTELRPGETLNV------------NFLLRMDRAHEAKIR 466
>pdb|2A73|A Chain A, Human Complement Component C3
pdb|2A74|A Chain A, Human Complement Component C3c
pdb|2A74|D Chain D, Human Complement Component C3c
pdb|2QKI|A Chain A, Human C3c In Complex With The Inhibitor Compstatin
pdb|2QKI|D Chain D, Human C3c In Complex With The Inhibitor Compstatin
Length = 643
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 45/120 (37%), Gaps = 18/120 (15%)
Query: 409 HRIPETSTGHDLNISEVAVDANEKEEFRP-PSPSP-SLTEVDLLSSVTKRLSELEEKVDT 466
+R+P G D S D K PS P S+T + + + LSE E+ T
Sbjct: 363 YRVPVAVQGEDTVQSLTQGDGVAKLSINTHPSQKPLSIT----VRTKKQELSEAEQATRT 418
Query: 467 LQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEAKFR 526
+QA P LH +V R + E + + L +DR EAK R
Sbjct: 419 MQALPYSTVGNSNNYLHLSVLRTELRPGETLNV------------NFLLRMDRAHEAKIR 466
>pdb|2HR0|A Chain A, Structure Of Complement C3b: Insights Into Complement
Activation And Regulation
pdb|2I07|A Chain A, Human Complement Component C3b
Length = 645
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 45/120 (37%), Gaps = 18/120 (15%)
Query: 409 HRIPETSTGHDLNISEVAVDANEKEEFRP-PSPSP-SLTEVDLLSSVTKRLSELEEKVDT 466
+R+P G D S D K PS P S+T + + + LSE E+ T
Sbjct: 363 YRVPVAVQGEDTVQSLTQGDGVAKLSINTHPSQKPLSIT----VRTKKQELSEAEQATRT 418
Query: 467 LQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEAKFR 526
+QA P LH +V R + E + + L +DR EAK R
Sbjct: 419 MQALPYSTVGNSNNYLHLSVLRTELRPGETLNV------------NFLLRMDRAHEAKIR 466
>pdb|2XWB|A Chain A, Crystal Structure Of Complement C3b In Complex With
Factors B And D
pdb|2XWB|C Chain C, Crystal Structure Of Complement C3b In Complex With
Factors B And D
Length = 642
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 45/120 (37%), Gaps = 18/120 (15%)
Query: 409 HRIPETSTGHDLNISEVAVDANEKEEFRP-PSPSP-SLTEVDLLSSVTKRLSELEEKVDT 466
+R+P G D S D K PS P S+T + + + LSE E+ T
Sbjct: 363 YRVPVAVQGEDTVQSLTQGDGVAKLSINTHPSQKPLSIT----VRTKKQELSEAEQATRT 418
Query: 467 LQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEAKFR 526
+QA P LH +V R + E + + L +DR EAK R
Sbjct: 419 MQALPYSTVGNSNNYLHLSVLRTELRPGETLNV------------NFLLRMDRAHEAKIR 466
>pdb|2WII|A Chain A, Complement C3b In Complex With Factor H Domains 1-4
pdb|2WIN|A Chain A, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|C Chain C, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|E Chain E, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|G Chain G, C3 Convertase (C3bbb) Stabilized By Scin
pdb|3L3O|A Chain A, Staphylococcal Complement Inhibitor (Scin) In Complex With
Human Complement Component C3c
pdb|3L3O|D Chain D, Staphylococcal Complement Inhibitor (Scin) In Complex With
Human Complement Component C3c
pdb|3L5N|A Chain A, Staphylococcal Complement Inhibitor (Scin) In Complex With
Human Complement Component C3b
pdb|3NMS|A Chain A, Staphylococcal Complement Inhibitor (Scin) In Complex With
Human Complement C3c
pdb|3OHX|A Chain A, Molecular Basis For Complement Recognition And Inhibition
Determined By Crystallographic Studies Of The
Staphylococcal Complement Inhibitor (Scin) Bound To C3c
And C3b
pdb|3OHX|D Chain D, Molecular Basis For Complement Recognition And Inhibition
Determined By Crystallographic Studies Of The
Staphylococcal Complement Inhibitor (Scin) Bound To C3c
And C3b
pdb|2XWJ|A Chain A, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|C Chain C, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|E Chain E, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|G Chain G, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|3T4A|A Chain A, Structure Of A Truncated Form Of Staphylococcal Complement
Inhibitor B Bound To Human C3c At 3.4 Angstrom
Resolution
pdb|3T4A|D Chain D, Structure Of A Truncated Form Of Staphylococcal Complement
Inhibitor B Bound To Human C3c At 3.4 Angstrom
Resolution
Length = 645
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 45/120 (37%), Gaps = 18/120 (15%)
Query: 409 HRIPETSTGHDLNISEVAVDANEKEEFRP-PSPSP-SLTEVDLLSSVTKRLSELEEKVDT 466
+R+P G D S D K PS P S+T + + + LSE E+ T
Sbjct: 363 YRVPVAVQGEDTVQSLTQGDGVAKLSINTHPSQKPLSIT----VRTKKQELSEAEQATRT 418
Query: 467 LQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEAKFR 526
+QA P LH +V R + E + + L +DR EAK R
Sbjct: 419 MQALPYSTVGNSNNYLHLSVLRTELRPGETLNV------------NFLLRMDRAHEAKIR 466
>pdb|3G6J|A Chain A, C3b In Complex With A C3b Specific Fab
pdb|3G6J|C Chain C, C3b In Complex With A C3b Specific Fab
Length = 644
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 45/120 (37%), Gaps = 18/120 (15%)
Query: 409 HRIPETSTGHDLNISEVAVDANEKEEFRP-PSPSP-SLTEVDLLSSVTKRLSELEEKVDT 466
+R+P G D S D K PS P S+T + + + LSE E+ T
Sbjct: 363 YRVPVAVQGEDTVQSLTQGDGVAKLSINTHPSQKPLSIT----VRTKKQELSEAEQATRT 418
Query: 467 LQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEAKFR 526
+QA P LH +V R + E + + L +DR EAK R
Sbjct: 419 MQALPYSTVGNSNNYLHLSVLRTELRPGETLNV------------NFLLRMDRAHEAKIR 466
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,902,863
Number of Sequences: 62578
Number of extensions: 685937
Number of successful extensions: 1648
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1618
Number of HSP's gapped (non-prelim): 31
length of query: 532
length of database: 14,973,337
effective HSP length: 103
effective length of query: 429
effective length of database: 8,527,803
effective search space: 3658427487
effective search space used: 3658427487
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)