Query 009551
Match_columns 532
No_of_seqs 327 out of 1415
Neff 6.4
Searched_HMMs 46136
Date Thu Mar 28 14:29:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009551.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009551hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1471 Phosphatidylinositol t 100.0 2.2E-43 4.8E-48 363.8 18.8 246 9-256 36-285 (317)
2 KOG1470 Phosphatidylinositol t 100.0 2.2E-39 4.9E-44 328.6 18.3 213 15-255 47-259 (324)
3 PF00650 CRAL_TRIO: CRAL/TRIO 100.0 3.4E-30 7.4E-35 237.8 10.3 157 64-230 2-159 (159)
4 smart00516 SEC14 Domain in hom 99.9 1.7E-27 3.7E-32 219.6 14.5 154 65-232 5-158 (158)
5 cd00170 SEC14 Sec14p-like lipi 99.9 1.9E-24 4E-29 196.5 14.3 145 73-230 13-157 (157)
6 PF13716 CRAL_TRIO_2: Divergen 99.3 3.4E-13 7.3E-18 124.2 2.7 140 73-234 6-147 (149)
7 PF03765 CRAL_TRIO_N: CRAL/TRI 98.2 1.3E-06 2.8E-11 67.4 4.3 33 9-41 23-55 (55)
8 KOG4406 CDC42 Rho GTPase-activ 97.9 3.3E-05 7.2E-10 81.2 9.2 127 76-223 89-215 (467)
9 PRK01026 tetrahydromethanopter 78.9 2.4 5.1E-05 35.1 3.3 25 444-468 11-35 (77)
10 TIGR01149 mtrG N5-methyltetrah 78.7 2.4 5.2E-05 34.3 3.2 25 444-468 8-32 (70)
11 COG4064 MtrG Tetrahydromethano 77.4 3 6.5E-05 33.7 3.4 24 444-467 11-34 (75)
12 PF04210 MtrG: Tetrahydrometha 72.9 3.5 7.6E-05 33.4 2.8 24 444-467 8-31 (70)
13 PF10805 DUF2730: Protein of u 64.5 72 0.0016 27.9 9.6 17 386-402 9-25 (106)
14 PF02845 CUE: CUE domain; Int 57.0 21 0.00046 25.6 4.1 32 8-40 9-40 (42)
15 TIGR02132 phaR_Bmeg polyhydrox 56.4 42 0.0009 32.3 6.9 73 448-521 72-155 (189)
16 KOG1962 B-cell receptor-associ 53.3 66 0.0014 32.0 8.1 73 448-520 114-191 (216)
17 PHA01750 hypothetical protein 52.4 73 0.0016 25.7 6.6 42 480-523 30-71 (75)
18 smart00546 CUE Domain that may 47.6 30 0.00065 24.9 3.6 33 7-40 9-41 (43)
19 PF05377 FlaC_arch: Flagella a 45.4 63 0.0014 25.2 5.2 35 488-522 1-35 (55)
20 TIGR03185 DNA_S_dndD DNA sulfu 44.8 94 0.002 35.8 9.0 64 448-513 391-454 (650)
21 PF08317 Spc7: Spc7 kinetochor 44.5 1.3E+02 0.0027 31.6 9.2 73 449-521 178-250 (325)
22 TIGR03752 conj_TIGR03752 integ 44.0 1.3E+02 0.0029 33.2 9.4 73 445-517 56-135 (472)
23 KOG0612 Rho-associated, coiled 43.5 89 0.0019 38.3 8.4 46 450-503 443-491 (1317)
24 COG1340 Uncharacterized archae 42.7 2E+02 0.0044 29.9 10.0 65 450-523 109-173 (294)
25 PF14555 UBA_4: UBA-like domai 42.1 35 0.00077 24.7 3.3 24 16-39 14-37 (43)
26 PF10368 YkyA: Putative cell-w 41.5 1.2E+02 0.0026 29.8 7.9 77 448-524 32-112 (204)
27 KOG3313 Molecular chaperone Pr 41.2 1.3E+02 0.0029 29.0 7.7 62 462-523 22-86 (187)
28 PF10158 LOH1CR12: Tumour supp 39.7 91 0.002 28.6 6.3 67 445-513 47-113 (131)
29 TIGR00034 aroFGH phospho-2-deh 39.1 2.7E+02 0.0058 29.7 10.5 67 68-145 199-265 (344)
30 PF05276 SH3BP5: SH3 domain-bi 38.0 2.5E+02 0.0055 28.3 9.8 54 454-509 97-150 (239)
31 PF05529 Bap31: B-cell recepto 37.5 98 0.0021 29.7 6.6 62 449-511 119-184 (192)
32 PF01496 V_ATPase_I: V-type AT 37.3 1.5E+02 0.0032 34.9 9.2 64 458-521 204-271 (759)
33 PF13080 DUF3926: Protein of u 35.4 33 0.00072 25.1 2.1 22 497-521 13-34 (44)
34 PF12718 Tropomyosin_1: Tropom 34.8 1.6E+02 0.0035 27.2 7.2 69 448-516 35-109 (143)
35 PF11221 Med21: Subunit 21 of 33.7 3.8E+02 0.0083 24.6 10.1 62 452-521 77-138 (144)
36 PLN03214 probable enoyl-CoA hy 33.1 1.4E+02 0.003 30.5 7.2 22 506-527 250-271 (278)
37 PF14712 Snapin_Pallidin: Snap 33.0 1.1E+02 0.0023 25.6 5.4 32 491-522 11-42 (92)
38 PF05276 SH3BP5: SH3 domain-bi 32.6 2.2E+02 0.0047 28.8 8.3 73 451-523 145-227 (239)
39 PF13234 rRNA_proc-arch: rRNA- 32.0 1.7E+02 0.0036 29.6 7.5 69 451-522 183-263 (268)
40 TIGR02132 phaR_Bmeg polyhydrox 30.9 1.6E+02 0.0035 28.5 6.5 13 498-510 142-154 (189)
41 PRK10884 SH3 domain-containing 30.7 3.4E+02 0.0073 26.8 9.1 70 454-523 92-168 (206)
42 PRK09261 phospho-2-dehydro-3-d 30.6 2.9E+02 0.0063 29.6 9.1 72 68-150 204-277 (349)
43 KOG1838 Alpha/beta hydrolase [ 30.6 3.3E+02 0.0072 29.8 9.7 90 78-192 122-217 (409)
44 PHA00687 hypothetical protein 30.6 1.1E+02 0.0025 22.8 4.3 29 473-501 10-48 (56)
45 PF04740 LXG: LXG domain of WX 29.0 1.9E+02 0.004 27.7 7.0 113 377-509 47-160 (204)
46 PRK12822 phospho-2-dehydro-3-d 28.9 1.6E+02 0.0035 31.5 6.9 83 68-162 204-287 (356)
47 PF05335 DUF745: Protein of un 28.6 95 0.0021 30.2 4.8 30 476-505 140-176 (188)
48 PF05377 FlaC_arch: Flagella a 28.6 1.7E+02 0.0037 22.8 5.2 15 456-470 1-15 (55)
49 PF07426 Dynactin_p22: Dynacti 28.2 1.2E+02 0.0025 29.2 5.3 53 445-499 51-106 (174)
50 smart00787 Spc7 Spc7 kinetocho 28.2 3.2E+02 0.0069 28.7 8.9 75 448-522 172-260 (312)
51 PRK09039 hypothetical protein; 28.1 1.1E+02 0.0024 32.4 5.7 28 380-407 18-47 (343)
52 KOG0249 LAR-interacting protei 27.8 3.9E+02 0.0084 31.3 9.9 39 482-520 211-249 (916)
53 PF10212 TTKRSYEDQ: Predicted 27.7 2.9E+02 0.0064 31.0 8.8 35 479-513 461-509 (518)
54 PF03961 DUF342: Protein of un 27.6 2.9E+02 0.0063 30.2 9.0 54 450-503 343-398 (451)
55 PHA02562 46 endonuclease subun 27.3 1.8E+02 0.0038 32.5 7.4 74 447-521 298-371 (562)
56 PF11802 CENP-K: Centromere-as 26.9 5.3E+02 0.012 26.6 9.9 37 449-485 53-89 (268)
57 PF12297 EVC2_like: Ellis van 26.6 3.1E+02 0.0066 30.1 8.5 23 381-403 67-89 (429)
58 KOG2129 Uncharacterized conser 26.3 4.3E+02 0.0094 29.0 9.4 74 448-521 201-288 (552)
59 PF04880 NUDE_C: NUDE protein, 26.2 86 0.0019 29.9 3.9 32 477-509 4-35 (166)
60 PF14282 FlxA: FlxA-like prote 25.7 3E+02 0.0065 24.0 7.1 52 445-497 16-68 (106)
61 PF15294 Leu_zip: Leucine zipp 25.4 1.9E+02 0.0042 29.9 6.5 61 455-526 190-250 (278)
62 PF06103 DUF948: Bacterial pro 25.4 3.1E+02 0.0068 22.8 6.9 43 481-523 27-69 (90)
63 PF04156 IncA: IncA protein; 25.3 5.4E+02 0.012 24.3 9.4 28 480-507 123-150 (191)
64 PF11068 YlqD: YlqD protein; 25.1 3.7E+02 0.008 24.6 7.7 51 475-525 15-73 (131)
65 PRK12756 phospho-2-dehydro-3-d 25.0 2E+02 0.0044 30.7 6.8 68 68-146 203-270 (348)
66 cd00194 UBA Ubiquitin Associat 24.3 1.1E+02 0.0024 20.9 3.4 24 15-38 13-36 (38)
67 PF07426 Dynactin_p22: Dynacti 24.2 2.2E+02 0.0049 27.2 6.4 16 449-464 6-21 (174)
68 PRK10884 SH3 domain-containing 24.2 2.1E+02 0.0045 28.2 6.4 16 485-500 151-166 (206)
69 KOG1419 Voltage-gated K+ chann 23.9 2.9E+02 0.0063 31.4 7.9 69 446-515 525-600 (654)
70 PF01102 Glycophorin_A: Glycop 23.6 1E+02 0.0022 28.0 3.7 34 378-411 62-95 (122)
71 PF12718 Tropomyosin_1: Tropom 23.1 2.6E+02 0.0056 25.9 6.4 58 452-513 11-68 (143)
72 PF05308 Mito_fiss_reg: Mitoch 23.0 91 0.002 31.8 3.7 27 484-510 119-145 (253)
73 PF03233 Cauli_AT: Aphid trans 22.9 2.7E+02 0.006 26.5 6.5 50 446-496 109-158 (163)
74 PRK06569 F0F1 ATP synthase sub 22.7 2.2E+02 0.0047 26.9 5.9 32 380-411 8-39 (155)
75 PF11471 Sugarporin_N: Maltopo 22.5 1E+02 0.0022 24.4 3.1 13 452-464 29-41 (60)
76 PF10779 XhlA: Haemolysin XhlA 22.4 4.1E+02 0.0089 21.3 7.2 34 451-502 2-35 (71)
77 smart00165 UBA Ubiquitin assoc 22.4 1.3E+02 0.0028 20.6 3.3 24 15-38 13-36 (37)
78 smart00353 HLH helix loop heli 21.4 2.6E+02 0.0057 20.4 5.2 24 474-497 29-52 (53)
79 PF06972 DUF1296: Protein of u 21.4 1.5E+02 0.0032 23.6 3.7 36 4-40 9-44 (60)
80 PF15027 DUF4525: Domain of un 21.3 91 0.002 28.5 2.9 23 446-468 84-106 (138)
81 PF13514 AAA_27: AAA domain 21.1 3.4E+02 0.0073 33.5 8.7 56 450-506 213-268 (1111)
82 PF00627 UBA: UBA/TS-N domain; 20.9 1.5E+02 0.0032 20.6 3.4 24 15-38 14-37 (37)
83 COG1842 PspA Phage shock prote 20.9 8.5E+02 0.018 24.3 10.1 58 450-517 61-118 (225)
84 PRK13729 conjugal transfer pil 20.8 2.2E+02 0.0047 31.7 6.2 42 455-503 76-120 (475)
85 KOG4182 Uncharacterized conser 20.7 1.5E+02 0.0033 32.9 4.9 24 483-506 108-131 (828)
86 PRK11613 folP dihydropteroate 20.3 9.7E+02 0.021 24.8 12.2 43 130-173 175-217 (282)
No 1
>KOG1471 consensus Phosphatidylinositol transfer protein SEC14 and related proteins [Lipid transport and metabolism]
Probab=100.00 E-value=2.2e-43 Score=363.79 Aligned_cols=246 Identities=47% Similarity=0.773 Sum_probs=226.7
Q ss_pred hccCC-CCCHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHcCCCCcccccChHHHHHHHhccCccccccCCCCCcEEEEe
Q 009551 9 FFFNP-CFNVATSLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGYHGVDKEGRPVYIER 87 (532)
Q Consensus 9 ~~l~~-~~DD~~LLRFLrArkfDvekA~~~l~~~l~WRk~~~~d~i~~d~~~~el~~vlk~~p~~~~G~Dk~GRPV~i~r 87 (532)
.++++ ++||.+||||||||+||+++|+++|.+++.||++++.+.|+.++ .....+.++++++++|+|++|+||++.+
T Consensus 36 ~~l~~~~~~d~~LlRfLra~~f~ve~a~~~l~~~l~~r~~~~~d~i~~~~--~~~~~~~~~~~~~~~~~~~~g~~v~~~~ 113 (317)
T KOG1471|consen 36 PHLPNKYDDDFNLLRFLRARKFDVEKAKQMLKRYLNWRKRNKLDEIFEDF--EEDDELLKYYPQGLHGVDKEGRPVYIER 113 (317)
T ss_pred cCCCCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCCccHhhcc--ccchhhhhhccccccccCCCCCEEEEec
Confidence 44554 78899999999999999999999999999999999999998762 3344556689999999999999999999
Q ss_pred cCccCcchhhhccCHHHHHHHHHHHHHHHHHhhcchhhhhhcCCCCceEEEEeCCCCCcCCCChHHHHHHHHHHHHhccc
Q 009551 88 LGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSKNARELILRLQKIDGDN 167 (532)
Q Consensus 88 lg~~d~~~l~~~~t~~~~lr~~v~~lE~~l~~~~pa~~~~~~~~i~~~t~IiDl~G~sl~~~~~~~~~lik~l~~ilqd~ 167 (532)
.|..+...++..+...++.++++..+|+.+..+++.|.....++++|+++|+|++|+++.++.......++.++.++++|
T Consensus 114 ~g~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~~g~~~I~Dl~G~~~~~~~~~~~~~~~~~~~~~q~~ 193 (317)
T KOG1471|consen 114 LGKIDPKGLLKRTGSLDYLKYHFKEFEKVFKLVLELELKTGERQISGIVTIFDLKGVSLSHLLKPAPTLLKKILKILQDN 193 (317)
T ss_pred cCCCCcccceeeccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEEEEECCCCcchhHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988887788999999999999999999988999999999999999
Q ss_pred cccccceeEEEcCCchhHHHHHHHHhcCChhhhcceEEeCccchHHHHccCCCCCCCccCCCCCCCC---CCCCCccCCC
Q 009551 168 YPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEFLGGTCNCA---DQGGCLRSDK 244 (532)
Q Consensus 168 YPErL~~i~IINaP~~f~~lw~lVKpFLd~kTr~KI~vlg~~~~~~Lle~Id~e~LP~eyGGt~~~~---~~ggc~~~~~ 244 (532)
|||+++++||||+|++|.++|+++||||+++|++||+++++++.+.|+++|+++.||++|||++.+. ..++|..++.
T Consensus 194 yPe~l~~~~iIN~P~~f~~~~~~ikpfL~~kt~~ki~~~~~~~~~~L~k~i~~~~LP~~yGG~~~~~~~~~~~~~~~~~~ 273 (317)
T KOG1471|consen 194 YPERLKRIHIINAPTIFSALWKVVKPFLDEKTRKKIHVLHSKDKESLLKYIPPEVLPEEYGGTCGDLDDPNGGGCDLSDE 273 (317)
T ss_pred CHHhhceEEEEcCchhHHHHHHHHhccCCHHHHhhheecCCCchhhhhhhCCHhhCccccCCCccccccccCCcCccccc
Confidence 9999999999999999999999999999999999999777788999999999999999999999996 3567999999
Q ss_pred CCCCCHHHHHHH
Q 009551 245 GPWQNPEILKMV 256 (532)
Q Consensus 245 gpW~dp~~~k~v 256 (532)
+||.++...+..
T Consensus 274 ~~~~~~~~~~~~ 285 (317)
T KOG1471|consen 274 GPWKEPEIKKGK 285 (317)
T ss_pred cccccccccccc
Confidence 999887665543
No 2
>KOG1470 consensus Phosphatidylinositol transfer protein PDR16 and related proteins [Lipid transport and metabolism]
Probab=100.00 E-value=2.2e-39 Score=328.60 Aligned_cols=213 Identities=31% Similarity=0.497 Sum_probs=186.3
Q ss_pred CCHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHcCCCCcccccChHHHHHHHhccCccccccCCCCCcEEEEecCccCcc
Q 009551 15 FNVATSLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGYHGVDKEGRPVYIERLGKVDSN 94 (532)
Q Consensus 15 ~DD~~LLRFLrArkfDvekA~~~l~~~l~WRk~~~~d~i~~d~~~~el~~vlk~~p~~~~G~Dk~GRPV~i~rlg~~d~~ 94 (532)
.+|.+++|||||||||+++|.+|+.++|.||+.+++..++ ...++..-+..+.++++|+|++||||+|+++.....+
T Consensus 47 ~~d~cllRfLrAr~wnv~kA~kml~~tL~WR~~~~~~~~~---~~~Ev~~e~~tGK~yi~G~D~~gRPVl~~~~~~~~qn 123 (324)
T KOG1470|consen 47 CSDACLLRFLRARKWNVKKASKMLSNTLKWRRSFGPEEVI---EADEVAAELETGKAYILGHDKDGRPVLYLRPRPHRQN 123 (324)
T ss_pred CcHHHHHHHHHHcCCcHHHHHHHHHHHhHHHHhcCCcccc---CHHHHHHHhhcCcEEEecccCCCCeEEEEecCCCCCC
Confidence 4789999999999999999999999999999999988732 3455666677899999999999999999966654444
Q ss_pred hhhhccCHHHHHHHHHHHHHHHHHhhcchhhhhhcCCCCceEEEEeCCCCCcCCCChHHHHHHHHHHHHhccccccccce
Q 009551 95 KLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQ 174 (532)
Q Consensus 95 ~l~~~~t~~~~lr~~v~~lE~~l~~~~pa~~~~~~~~i~~~t~IiDl~G~sl~~~~~~~~~lik~l~~ilqd~YPErL~~ 174 (532)
. .+.+++.++.|++||.++..+ +.+++++++++|++|+|++|.+ ....+.++.++|+||||||+.
T Consensus 124 ~----~t~~~~~r~~Vy~mE~Ai~~l--------p~~qe~~~~L~D~~~fs~sN~d---~~~~k~~~~~lq~hYPErLg~ 188 (324)
T KOG1470|consen 124 T----KTQKELERLLVYTLENAILFL--------PPGQEQFVWLFDLTGFSMSNPD---IKFLKELLHILQDHYPERLGK 188 (324)
T ss_pred C----CCHHHHHHHHHHHHHHHHHhC--------CCCcceEEEEEecccCcccCCC---cHHHHHHHHHHHHhChHHhhh
Confidence 3 489999999999999998754 4568889999999999999988 789999999999999999999
Q ss_pred eEEEcCCchhHHHHHHHHhcCChhhhcceEEeCccchHHHHccCCCCCCCccCCCCCCCCCCCCCccCCCCCCCCHHHHH
Q 009551 175 MFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEFLGGTCNCADQGGCLRSDKGPWQNPEILK 254 (532)
Q Consensus 175 i~IINaP~~f~~lw~lVKpFLd~kTr~KI~vlg~~~~~~Lle~Id~e~LP~eyGGt~~~~~~ggc~~~~~gpW~dp~~~k 254 (532)
.+|+|+||+|..+|+++||||||.|++||.|..+. ..|.++||+++||..|||+..+. +.+..+| +.+.+
T Consensus 189 a~l~~~P~iF~~~wkiikpflDp~t~~Kv~F~~~~--~~l~~~~d~~~l~s~~GG~~~~~------y~~e~~~--~~~~~ 258 (324)
T KOG1470|consen 189 ALLVNAPWIFQPFWKIIKPFLDPKTASKVKFVEPK--DDLSEYFDESQLPSLFGGKLLFE------YTHEEYW--PQMKE 258 (324)
T ss_pred hhhcCChHHHHHHHHHhhhccChhhhceeEEecCh--hHHHhhCCccccchhhCCCcccc------cCCcchh--hhhhh
Confidence 99999999999999999999999999999998763 55999999999999999987775 4666788 54444
Q ss_pred H
Q 009551 255 M 255 (532)
Q Consensus 255 ~ 255 (532)
-
T Consensus 259 ~ 259 (324)
T KOG1470|consen 259 D 259 (324)
T ss_pred h
Confidence 3
No 3
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....
Probab=99.96 E-value=3.4e-30 Score=237.84 Aligned_cols=157 Identities=37% Similarity=0.585 Sum_probs=130.5
Q ss_pred HHHhccCccccccCCCCCcEEEEecCccCcchhhhccCHHHHHHHHHHHHHHHHHhhcchhhhhhcCCCCceEEEEeCCC
Q 009551 64 EVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQG 143 (532)
Q Consensus 64 ~vlk~~p~~~~G~Dk~GRPV~i~rlg~~d~~~l~~~~t~~~~lr~~v~~lE~~l~~~~pa~~~~~~~~i~~~t~IiDl~G 143 (532)
++++.++++++|+|++||||+|+++|++|+.. .+.+++++++++.+|.+++...+ ..+++++++|+|++|
T Consensus 2 ~~~~~~~~~~~g~D~~gr~v~~~~~~~~~~~~----~~~~~~~~~~~~~~E~~~~~~~~------~~~~~~~~~iiD~~g 71 (159)
T PF00650_consen 2 EILKSGPFYLHGRDKDGRPVIYIRLGRFDPKK----FSPEDVIRFFVYLLERMLKRMPE------GGQVEGIVVIIDLSG 71 (159)
T ss_dssp HHHTTSCEEEEEE-TTS-EEEEEEGTT--HHT----S-HHHHHHHHHHHHHHHHHTHHH------TSHHH-EEEEEE-TT
T ss_pred HHHCCeeEEECCCCCCcCEEEEEEcccCCCCc----CCHHHHHHHHHHHHHHHHhhhcc------cccceeEEEEEeCCC
Confidence 46788999999999999999999999999985 46889999999999999863311 356899999999999
Q ss_pred CCcCCCChHHHHHHHHHHHHhccccccccceeEEEcCCchhHHHHHHHHhcCChhhhcceEEeCc-cchHHHHccCCCCC
Q 009551 144 VGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGN-KYQSKLLEIIDARE 222 (532)
Q Consensus 144 ~sl~~~~~~~~~lik~l~~ilqd~YPErL~~i~IINaP~~f~~lw~lVKpFLd~kTr~KI~vlg~-~~~~~Lle~Id~e~ 222 (532)
+++++++....+.++.++++++++||||++++||||+|++|+++|++++|||+++|++||+++++ ++.+.|.++||+++
T Consensus 72 ~~~~~~~~~~~~~~k~~~~~~~~~yP~rl~~i~iin~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~~l~~~i~~~~ 151 (159)
T PF00650_consen 72 FSLSNFDWWPISFLKKIIQLLQDHYPERLGKIYIINAPWFFRVLWKIVKPFLSPKTREKIVFHSGSDWKAKLKEYIDPEQ 151 (159)
T ss_dssp --HHHHHCHHHHHHHHHHHHHHHHSTTTEEEEEEES--TTHHHHHHHHGGGS-HHHHCTEEEECTTCHCHHHCCCSTGGG
T ss_pred ceEeccccchhhhhhhhhhhhcccCCccceeEEEEecChhhhhhHhHHHhhcCHhhheeEEEECCcccHHHHHhhCCHhH
Confidence 99998875448999999999999999999999999999999999999999999999999999964 55578999999999
Q ss_pred CCccCCCC
Q 009551 223 LPEFLGGT 230 (532)
Q Consensus 223 LP~eyGGt 230 (532)
||.+|||+
T Consensus 152 lP~~~GG~ 159 (159)
T PF00650_consen 152 LPVEYGGT 159 (159)
T ss_dssp SBGGGTSS
T ss_pred CchhcCCC
Confidence 99999996
No 4
>smart00516 SEC14 Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.95 E-value=1.7e-27 Score=219.56 Aligned_cols=154 Identities=40% Similarity=0.651 Sum_probs=138.7
Q ss_pred HHhccCccccccCCCCCcEEEEecCccCcchhhhccCHHHHHHHHHHHHHHHHHhhcchhhhhhcCCCCceEEEEeCCCC
Q 009551 65 VLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGV 144 (532)
Q Consensus 65 vlk~~p~~~~G~Dk~GRPV~i~rlg~~d~~~l~~~~t~~~~lr~~v~~lE~~l~~~~pa~~~~~~~~i~~~t~IiDl~G~ 144 (532)
...+.++++ |.|++||||+|+++++++++. .+.+++++++++.+|.+++.. ....+++++++|+|++|+
T Consensus 5 ~~~~~~~~~-g~D~~GrpV~~~~~~~~~~~~----~~~~~~~~~~~~~~e~~~~~~------~~~~~~~~~~~i~D~~~~ 73 (158)
T smart00516 5 GKAYIPGGR-GYDKDGRPVLIFRAGRFDLKS----VTLEELLRYLVYVLEKILQRE------KKTGGIEGFTVIFDLKGL 73 (158)
T ss_pred HHHhcCCCC-CCCCCcCEEEEEeccccccCc----CCHHHHHHHHHHHHHHHHHHH------hcCCCeeeEEEEEECCCC
Confidence 445667666 999999999999999998765 589999999999999988631 235578999999999999
Q ss_pred CcCCCChHHHHHHHHHHHHhccccccccceeEEEcCCchhHHHHHHHHhcCChhhhcceEEeCccchHHHHccCCCCCCC
Q 009551 145 GLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELP 224 (532)
Q Consensus 145 sl~~~~~~~~~lik~l~~ilqd~YPErL~~i~IINaP~~f~~lw~lVKpFLd~kTr~KI~vlg~~~~~~Lle~Id~e~LP 224 (532)
++++++ .+.++.+.++++++||++++++||||+|++++++|+++++|+++++++||+++++++.+.|.++||+++||
T Consensus 74 ~~~~~~---~~~lk~~~~~~~~~yp~~l~~i~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~L~~~i~~~~lP 150 (158)
T smart00516 74 SMSNPD---LSVLRKILKILQDHYPERLGKVLIINPPWFFRVLWKIIKPFLDEKTREKIRFVGNDSKEELLEYIDPEQLP 150 (158)
T ss_pred Cccccc---HHHHHHHHHHHHHHhHHHhCeEEEECCCHHHHHHHHHHHhhcChhhhccEEEeCCCCHHHHHhhCCHhhCc
Confidence 999866 78999999999999999999999999999999999999999999999999999986678999999999999
Q ss_pred ccCCCCCC
Q 009551 225 EFLGGTCN 232 (532)
Q Consensus 225 ~eyGGt~~ 232 (532)
.+|||++.
T Consensus 151 ~~~GG~~~ 158 (158)
T smart00516 151 EELGGTLD 158 (158)
T ss_pred HhhCCCCC
Confidence 99999973
No 5
>cd00170 SEC14 Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.92 E-value=1.9e-24 Score=196.55 Aligned_cols=145 Identities=39% Similarity=0.621 Sum_probs=128.4
Q ss_pred ccccCCCCCcEEEEecCccCcchhhhccCHHHHHHHHHHHHHHHHHhhcchhhhhhcCCCCceEEEEeCCCCCcCCCChH
Q 009551 73 YHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSKN 152 (532)
Q Consensus 73 ~~G~Dk~GRPV~i~rlg~~d~~~l~~~~t~~~~lr~~v~~lE~~l~~~~pa~~~~~~~~i~~~t~IiDl~G~sl~~~~~~ 152 (532)
..|.|++||||+++++++.+.... .+.+++++++++.+|..++... ....++++|+|++|++++++. .
T Consensus 13 ~~~~D~~gr~V~~~~~~~~~~~~~---~~~~~~~~~~~~~~e~~~~~~~--------~~~~~~~~i~D~~~~~~~~~~-~ 80 (157)
T cd00170 13 LGGRDKEGRPVLIIRAGNKDLSKS---LDSEELLRYLVYTLEKLLQEDD--------EQVEGFVVIIDLKGLSLSHLL-P 80 (157)
T ss_pred cCCCCCCcCEEEEEecCCcchhhc---CCHHHHHHHHHHHHHHHHhhhh--------hcccceEEEEECCCCChhccc-h
Confidence 344699999999999997666543 2459999999999999887422 223799999999999999986 5
Q ss_pred HHHHHHHHHHHhccccccccceeEEEcCCchhHHHHHHHHhcCChhhhcceEEeCccchHHHHccCCCCCCCccCCCC
Q 009551 153 ARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEFLGGT 230 (532)
Q Consensus 153 ~~~lik~l~~ilqd~YPErL~~i~IINaP~~f~~lw~lVKpFLd~kTr~KI~vlg~~~~~~Lle~Id~e~LP~eyGGt 230 (532)
..+.++.+.++++++||++++++||||+|++|+.+|+++++|+++++++||++++++ .+.|.++||+++||.+|||+
T Consensus 81 ~~~~~k~~~~~~~~~yp~~l~~v~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~-~~~L~~~i~~~~Lp~~~GG~ 157 (157)
T cd00170 81 DPSLLKKILKILQDNYPERLKAVYIINPPWFFKVLWKIVKPFLSEKTRKKIVFLGSD-KEELLKYIDKEQLPEEYGGT 157 (157)
T ss_pred hHHHHHHHHHHHHHhChHhhCeEEEECCCHhHHHHHHHHHHhcCHhhhhhEEEecCC-HHHHHhhCChhhCcHhhCCC
Confidence 588999999999999999999999999999999999999999999999999999875 68999999999999999996
No 6
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A.
Probab=99.34 E-value=3.4e-13 Score=124.23 Aligned_cols=140 Identities=20% Similarity=0.335 Sum_probs=94.2
Q ss_pred ccccCCCCCcEEEEecCccCcchhhhccCHHHHHHHHHHHHHHHHHhhcchhhhhhcCCCCceEEEEeCCCCCcCCCChH
Q 009551 73 YHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSKN 152 (532)
Q Consensus 73 ~~G~Dk~GRPV~i~rlg~~d~~~l~~~~t~~~~lr~~v~~lE~~l~~~~pa~~~~~~~~i~~~t~IiDl~G~sl~~~~~~ 152 (532)
..|+|++||||+++...++ ++. .+.+.++.|++..+... -...+.++|+|++|.+..+-.
T Consensus 6 ~gG~d~~g~pV~~~~~~~~-~~~----~~~~~ll~yl~~~l~~~-------------~~~~~f~vVid~~~~~~~~~~-- 65 (149)
T PF13716_consen 6 PGGRDREGRPVVVFIASRL-PSS----DDLERLLLYLLSTLSEE-------------VVDKPFSVVIDHTGFSRSSEP-- 65 (149)
T ss_dssp EEEEBTTS-EEEEEEGGG--C-T----THHHHHHHHHHHHH-TT-------------TTTS-EEEEEE-TT--GGG----
T ss_pred ecccCCCcCEEEEEECCcC-cch----hhHHHHHHHHHHhhhHH-------------hcCCCEEEEEEcCCCccccCC--
Confidence 4589999999999997776 332 25667777766655211 113459999999999875432
Q ss_pred HHHHHHHHHHHhccccccccceeEEEcCCchhHHHH-HHHHhcCChhh-hcceEEeCccchHHHHccCCCCCCCccCCCC
Q 009551 153 ARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLW-NTVKSFLDPKT-TSKIHVLGNKYQSKLLEIIDARELPEFLGGT 230 (532)
Q Consensus 153 ~~~lik~l~~ilqd~YPErL~~i~IINaP~~f~~lw-~lVKpFLd~kT-r~KI~vlg~~~~~~Lle~Id~e~LP~eyGGt 230 (532)
..+.++.+.+.+...|+..|+++||||+.++++.++ .+.+++++.+. ..||+++.+ .++|.++||.++||..+||+
T Consensus 66 ~~~~l~~~~~~l~~~~~~nl~~vyiv~p~~~~k~~~~~~~~~~~~~~~~~~kv~~~~s--l~~L~~~i~~~qL~~~lp~~ 143 (149)
T PF13716_consen 66 SLSWLKQLYKLLPRKYKKNLKKVYIVHPNWFLKKILATLLRPFVSSKFWKKKVVYVSS--LSELSKHIDPSQLPESLPGV 143 (149)
T ss_dssp -HHHHHHTTTSS-HHHHHTEEEEEEES--HHHHHHHHHTTTTGGGGTT--TTEEEESS--TCGGGGTSGGGG------HH
T ss_pred chHHHHHHHHHHHHHHhhceEEEEEECCCHHHHHHHHHHhcccccccccceEEEEECC--HHHHHhhCCHHHhcccCCCE
Confidence 267899999999999999999999999999999999 55567778888 999998865 58999999999999999988
Q ss_pred CCCC
Q 009551 231 CNCA 234 (532)
Q Consensus 231 ~~~~ 234 (532)
....
T Consensus 144 ~~~d 147 (149)
T PF13716_consen 144 LQYD 147 (149)
T ss_dssp H---
T ss_pred EecC
Confidence 7653
No 7
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1AUA_A 3Q8G_A 3B7Q_B 3B7Z_A 3B7N_A ....
Probab=98.23 E-value=1.3e-06 Score=67.43 Aligned_cols=33 Identities=36% Similarity=0.362 Sum_probs=27.2
Q ss_pred hccCCCCCHHHHHHHhhhcCCCHHHHHHHHHHH
Q 009551 9 FFFNPCFNVATSLRFLKARKFDIDKAKHMWAEM 41 (532)
Q Consensus 9 ~~l~~~~DD~~LLRFLrArkfDvekA~~~l~~~ 41 (532)
.......+|.+||||||||+|||++|.+||.+|
T Consensus 23 ~~~~~~~~d~~llRFLRARkf~v~~A~~mL~~t 55 (55)
T PF03765_consen 23 DDEKEDHDDNFLLRFLRARKFDVEKAFKMLKKT 55 (55)
T ss_dssp TTHTSS-SHHHHHHHHHHTTT-HHHHHHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHccCCHHHHHHHHHhC
Confidence 345566789999999999999999999999875
No 8
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=97.94 E-value=3.3e-05 Score=81.24 Aligned_cols=127 Identities=23% Similarity=0.298 Sum_probs=97.1
Q ss_pred cCCCCCcEEEEecCccCcchhhhccCHHHHHHHHHHHHHHHHHhhcchhhhhhcCCCCceEEEEeCCCCCcCCCChHHHH
Q 009551 76 VDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSKNARE 155 (532)
Q Consensus 76 ~Dk~GRPV~i~rlg~~d~~~l~~~~t~~~~lr~~v~~lE~~l~~~~pa~~~~~~~~i~~~t~IiDl~G~sl~~~~~~~~~ 155 (532)
.|+.||+|+++..-++-...- ..-.++++|.++.++..++. + .+.+.=-.|....+.+ .++
T Consensus 89 ~D~~gr~iivv~a~rlp~~~e---ld~~~li~~~v~~id~~Ve~-------------D-Yt~vYfh~gl~s~nkp--~l~ 149 (467)
T KOG4406|consen 89 KDKQGRKIIVVYACRLPSSSE---LDDIRLISYLVYTIDKYVEN-------------D-YTLVYFHHGLPSDNKP--YLQ 149 (467)
T ss_pred ccccCCeeEEEEEecCCchhh---hhhHHHHHHHHHHHHHHHhc-------------c-ceeeehhcCCcccccc--hHH
Confidence 699999999998877766531 12334999999999998862 1 4455544566655544 255
Q ss_pred HHHHHHHHhccccccccceeEEEcCCchhHHHHHHHHhcCChhhhcceEEeCccchHHHHccCCCCCC
Q 009551 156 LILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDAREL 223 (532)
Q Consensus 156 lik~l~~ilqd~YPErL~~i~IINaP~~f~~lw~lVKpFLd~kTr~KI~vlg~~~~~~Lle~Id~e~L 223 (532)
++....+-+-.+|=--++.+|+|..-|+.+++|+++|||++.+.+.||+-+ ++.++|.++|.-++|
T Consensus 150 ~l~~aYke~Dr~~~KNlKalYvvHptwfikvi~n~~kplIS~KF~rKi~Y~--n~lseL~~~l~l~rL 215 (467)
T KOG4406|consen 150 LLFDAYKELDRNFKKNLKALYVVHPTWFIKVIWNLFKPLISLKFTRKIIYF--NSLSELFEALKLNRL 215 (467)
T ss_pred HHHHHHHHHHHHHhhhhhheEEecHHHHHHHHHHHHhhhcchhhhceeEEe--ehHHHHHHhhhhhhh
Confidence 555555555567888999999999999999999999999999999999988 457899998875554
No 9
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=78.87 E-value=2.4 Score=35.08 Aligned_cols=25 Identities=32% Similarity=0.496 Sum_probs=20.7
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhc
Q 009551 444 LTEVDLLSSVTKRLSELEEKVDTLQ 468 (532)
Q Consensus 444 ~~~~~~~~~~~~r~~~le~~~~~l~ 468 (532)
+++.+.+..+++||.++||||+.-+
T Consensus 11 iv~~~d~~~i~~rLD~iEeKVEftn 35 (77)
T PRK01026 11 VVDPKDFKEIQKRLDEIEEKVEFTN 35 (77)
T ss_pred ecCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666667999999999999998643
No 10
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=78.69 E-value=2.4 Score=34.30 Aligned_cols=25 Identities=44% Similarity=0.630 Sum_probs=20.5
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhc
Q 009551 444 LTEVDLLSSVTKRLSELEEKVDTLQ 468 (532)
Q Consensus 444 ~~~~~~~~~~~~r~~~le~~~~~l~ 468 (532)
++..+.+..+++||.++|+||+.-+
T Consensus 8 ~v~~~d~~~i~~rLd~iEeKVEf~~ 32 (70)
T TIGR01149 8 FVEPDEFNEVMKRLDEIEEKVEFVN 32 (70)
T ss_pred ecCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666667999999999999998643
No 11
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=77.40 E-value=3 Score=33.75 Aligned_cols=24 Identities=38% Similarity=0.614 Sum_probs=19.9
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHh
Q 009551 444 LTEVDLLSSVTKRLSELEEKVDTL 467 (532)
Q Consensus 444 ~~~~~~~~~~~~r~~~le~~~~~l 467 (532)
+..+|.+..+.+||.++|+||+..
T Consensus 11 ~v~~~dfne~~kRLdeieekvef~ 34 (75)
T COG4064 11 VVDPDDFNEIHKRLDEIEEKVEFV 34 (75)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHhh
Confidence 455666799999999999999754
No 12
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=72.91 E-value=3.5 Score=33.39 Aligned_cols=24 Identities=38% Similarity=0.581 Sum_probs=20.0
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHh
Q 009551 444 LTEVDLLSSVTKRLSELEEKVDTL 467 (532)
Q Consensus 444 ~~~~~~~~~~~~r~~~le~~~~~l 467 (532)
++..+.+..+++||.++|+||+.-
T Consensus 8 iv~~~~~~~i~~rLd~iEeKvEf~ 31 (70)
T PF04210_consen 8 IVDPDDFNEIMKRLDEIEEKVEFT 31 (70)
T ss_pred eeCHHHHHHHHHHHHHHHHHHHhH
Confidence 456666799999999999999754
No 13
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=64.53 E-value=72 Score=27.93 Aligned_cols=17 Identities=24% Similarity=0.470 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 009551 386 WAAVMAFFMMFVTLFRS 402 (532)
Q Consensus 386 ~~~~~~~~~~~~~~~~~ 402 (532)
|..+.+++..+++++..
T Consensus 9 w~ii~a~~~~~~~~~~~ 25 (106)
T PF10805_consen 9 WGIIWAVFGIAGGIFWL 25 (106)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 45566666666666665
No 14
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=56.95 E-value=21 Score=25.64 Aligned_cols=32 Identities=19% Similarity=0.121 Sum_probs=24.7
Q ss_pred hhccCCCCCHHHHHHHhhhcCCCHHHHHHHHHH
Q 009551 8 IFFFNPCFNVATSLRFLKARKFDIDKAKHMWAE 40 (532)
Q Consensus 8 ~~~l~~~~DD~~LLRFLrArkfDvekA~~~l~~ 40 (532)
...+| ..+...+.+-|+++++|++.|..+|-+
T Consensus 9 ~~mFP-~~~~~~I~~~L~~~~~~ve~ai~~LL~ 40 (42)
T PF02845_consen 9 QEMFP-DLDREVIEAVLQANNGDVEAAIDALLE 40 (42)
T ss_dssp HHHSS-SS-HHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHCC-CCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 33444 456678999999999999999998864
No 15
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=56.35 E-value=42 Score=32.31 Aligned_cols=73 Identities=23% Similarity=0.309 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHHHHHHHHHh-----------cCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 009551 448 DLLSSVTKRLSELEEKVDTL-----------QAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAY 516 (532)
Q Consensus 448 ~~~~~~~~r~~~le~~~~~l-----------~~kP~~~p~eke~~l~~~~~Rv~~~e~~l~~tkkaL~~al~kQ~El~ay 516 (532)
+.+..+-.|+-.||+||+.| ...--.=|.+|++ ++.-=.||.+||.-+.+-=.+|+-----|.||-+.
T Consensus 72 ~DiarvA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~-v~~~~q~~~~l~~K~D~~L~llE~~~~~~~~~~~~ 150 (189)
T TIGR02132 72 EDIANVASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKD-VTKLKQDIKSLDKKLDKILELLEGQQKTQDELKET 150 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhH-HHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHH
Confidence 33455556655555555443 3222255667766 35556778888877776666666333344444444
Q ss_pred HHHHH
Q 009551 517 IDRQE 521 (532)
Q Consensus 517 ie~~k 521 (532)
|.++-
T Consensus 151 ~~~~~ 155 (189)
T TIGR02132 151 IQKQI 155 (189)
T ss_pred HHHHH
Confidence 44443
No 16
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=53.31 E-value=66 Score=31.99 Aligned_cols=73 Identities=21% Similarity=0.185 Sum_probs=48.4
Q ss_pred hhHHHHHHHHHHHHHH-----HHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 009551 448 DLLSSVTKRLSELEEK-----VDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQ 520 (532)
Q Consensus 448 ~~~~~~~~r~~~le~~-----~~~l~~kP~~~p~eke~~l~~~~~Rv~~~e~~l~~tkkaL~~al~kQ~El~ayie~~ 520 (532)
+.++..+.||..+++- -+....|+.+=+..+|+=........+-||.||+++++.|+.+-.+=.+|--+.|..
T Consensus 114 ~R~~~ll~~l~~l~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~ 191 (216)
T KOG1962|consen 114 RRLHTLLRELATLRANEKAMKENEALKKQLENSSKLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGL 191 (216)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3456778888888861 233333334444445666677778899999999999999987655555555555443
No 17
>PHA01750 hypothetical protein
Probab=52.43 E-value=73 Score=25.71 Aligned_cols=42 Identities=21% Similarity=0.339 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 009551 480 ELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEA 523 (532)
Q Consensus 480 ~~l~~~~~Rv~~~e~~l~~tkkaL~~al~kQ~El~ayie~~k~~ 523 (532)
.+|.+|+.-| +-+||.--++-++++-.||.+|-+-++..|++
T Consensus 30 q~lkdAvkeI--V~~ELdNL~~ei~~~kikqDnl~~qv~eik~k 71 (75)
T PHA01750 30 QALKDAVKEI--VNSELDNLKTEIEELKIKQDELSRQVEEIKRK 71 (75)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 5677777644 56778888888888889999998888777654
No 18
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=47.57 E-value=30 Score=24.92 Aligned_cols=33 Identities=12% Similarity=0.096 Sum_probs=25.1
Q ss_pred hhhccCCCCCHHHHHHHhhhcCCCHHHHHHHHHH
Q 009551 7 VIFFFNPCFNVATSLRFLKARKFDIDKAKHMWAE 40 (532)
Q Consensus 7 ~~~~l~~~~DD~~LLRFLrArkfDvekA~~~l~~ 40 (532)
+...+| ..+...+.+.|+++++|++.|...|.+
T Consensus 9 L~~mFP-~l~~~~I~~~L~~~~g~ve~~i~~LL~ 41 (43)
T smart00546 9 LKDMFP-NLDEEVIKAVLEANNGNVEATINNLLE 41 (43)
T ss_pred HHHHCC-CCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 334444 455668999999999999999988753
No 19
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=45.44 E-value=63 Score=25.23 Aligned_cols=35 Identities=26% Similarity=0.444 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 009551 488 RVDALEAELIATKKALHEALMRQEDLLAYIDRQEE 522 (532)
Q Consensus 488 Rv~~~e~~l~~tkkaL~~al~kQ~El~ayie~~k~ 522 (532)
||+.||.++.+.+-.+...=.-.++|-+.||+.++
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~e 35 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEE 35 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444433222233444444444443
No 20
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=44.79 E-value=94 Score=35.78 Aligned_cols=64 Identities=30% Similarity=0.394 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 009551 448 DLLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDL 513 (532)
Q Consensus 448 ~~~~~~~~r~~~le~~~~~l~~kP~~~p~eke~~l~~~~~Rv~~~e~~l~~tkkaL~~al~kQ~El 513 (532)
..+..+.+++.+||+..+.|..|=...|.+ +-+..-..+.+.++.++.+.+..+.....+-+++
T Consensus 391 ~~~~~~~~~~~~~e~el~~l~~~l~~~~~~--e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~ 454 (650)
T TIGR03185 391 DAKSQLLKELRELEEELAEVDKKISTIPSE--EQIAQLLEELGEAQNELFRSEAEIEELLRQLETL 454 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788999999999999999988877764 2444445555555555555555444443333333
No 21
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=44.49 E-value=1.3e+02 Score=31.63 Aligned_cols=73 Identities=30% Similarity=0.330 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 009551 449 LLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQE 521 (532)
Q Consensus 449 ~~~~~~~r~~~le~~~~~l~~kP~~~p~eke~~l~~~~~Rv~~~e~~l~~tkkaL~~al~kQ~El~ayie~~k 521 (532)
.+..+..|.+.|++++..|...+.++=..--+-|+++=.++.+++.++++-|+-|.+.=.+=.++-+-|+..+
T Consensus 178 ~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~ 250 (325)
T PF08317_consen 178 LLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELE 250 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888889999999888887653333445556666666666666655555554444444444444444
No 22
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=44.00 E-value=1.3e+02 Score=33.24 Aligned_cols=73 Identities=19% Similarity=0.288 Sum_probs=49.7
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHH--HHH-----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 009551 445 TEVDLLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLH--AAV-----CRVDALEAELIATKKALHEALMRQEDLLAYI 517 (532)
Q Consensus 445 ~~~~~~~~~~~r~~~le~~~~~l~~kP~~~p~eke~~l~--~~~-----~Rv~~~e~~l~~tkkaL~~al~kQ~El~ayi 517 (532)
+..|.+..++-++.+|++++..|...=...=.|.|+|-+ .++ .+|++-..||......|.+...+...++.-+
T Consensus 56 TP~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l 135 (472)
T TIGR03752 56 TPADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQL 135 (472)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778899999999999999999998765556666666643 111 2344555666666666766655555555444
No 23
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=43.48 E-value=89 Score=38.32 Aligned_cols=46 Identities=30% Similarity=0.435 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCChhHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 009551 450 LSSVTKRLSELEEKVDTLQAKPSEMPYEKEEL---LHAAVCRVDALEAELIATKKAL 503 (532)
Q Consensus 450 ~~~~~~r~~~le~~~~~l~~kP~~~p~eke~~---l~~~~~Rv~~~e~~l~~tkkaL 503 (532)
+..-++.++.|+++...++ ++|++ |+..+.+.+..|++|..+++||
T Consensus 443 l~~~~~~~~~~~~~~~~~~--------~~~~~~keL~e~i~~lk~~~~el~~~q~~l 491 (1317)
T KOG0612|consen 443 LVNEMQEKEKLDEKCQAVA--------ELEEMDKELEETIEKLKSEESELQREQKAL 491 (1317)
T ss_pred hhhHHHHhhhHHHHHHHHh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666899999999999998 77777 8899999999999999977776
No 24
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=42.72 E-value=2e+02 Score=29.94 Aligned_cols=65 Identities=32% Similarity=0.385 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 009551 450 LSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEA 523 (532)
Q Consensus 450 ~~~~~~r~~~le~~~~~l~~kP~~~p~eke~~l~~~~~Rv~~~e~~l~~tkkaL~~al~kQ~El~ayie~~k~~ 523 (532)
+.+.=+.+.+||.+..+. ..|+++|.-| +.+|.-|+.+|+..+|++....--| ||.+=|+..+++
T Consensus 109 ~~~ler~i~~Le~~~~T~-----~L~~e~E~~l---vq~I~~L~k~le~~~k~~e~~~~~~-el~aei~~lk~~ 173 (294)
T COG1340 109 IKSLEREIERLEKKQQTS-----VLTPEEEREL---VQKIKELRKELEDAKKALEENEKLK-ELKAEIDELKKK 173 (294)
T ss_pred HHHHHHHHHHHHHHHHhc-----CCChHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 467778899999998874 4788888766 6678889999999999999988775 555666665543
No 25
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=42.14 E-value=35 Score=24.67 Aligned_cols=24 Identities=17% Similarity=0.495 Sum_probs=20.0
Q ss_pred CHHHHHHHhhhcCCCHHHHHHHHH
Q 009551 16 NVATSLRFLKARKFDIDKAKHMWA 39 (532)
Q Consensus 16 DD~~LLRFLrArkfDvekA~~~l~ 39 (532)
++..-..||.+.+||++.|+..+-
T Consensus 14 ~~~~A~~~L~~~~wdle~Av~~y~ 37 (43)
T PF14555_consen 14 DEDVAIQYLEANNWDLEAAVNAYF 37 (43)
T ss_dssp SHHHHHHHHHHTTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 567789999999999999998764
No 26
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=41.54 E-value=1.2e+02 Score=29.85 Aligned_cols=77 Identities=30% Similarity=0.340 Sum_probs=54.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCCCC----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 009551 448 DLLSSVTKRLSELEEKVDTLQAKPSEMP----YEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEA 523 (532)
Q Consensus 448 ~~~~~~~~r~~~le~~~~~l~~kP~~~p----~eke~~l~~~~~Rv~~~e~~l~~tkkaL~~al~kQ~El~ayie~~k~~ 523 (532)
..+....+.|.+||++...|-.+=-+.. .+=......|+..|+.=|..|.+-|++|.++--....+-.||++-+..
T Consensus 32 k~~~~~~k~L~~lE~~~q~lY~~ii~~~~~d~~~v~~~~~~a~~nv~~R~k~l~~Ek~ai~~a~~e~~~~~~~i~ki~d~ 111 (204)
T PF10368_consen 32 KPFKEQQKKLNELEKKEQELYEQIIQLGKDDNDEVKKLSDEALKNVDEREKELKKEKEAIEKAKEEFKKAKKYIDKIEDE 111 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTGG---G-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Confidence 3468889999999999999988753333 345677888999999999999999999999999888888998877644
Q ss_pred h
Q 009551 524 K 524 (532)
Q Consensus 524 k 524 (532)
+
T Consensus 112 ~ 112 (204)
T PF10368_consen 112 K 112 (204)
T ss_dssp H
T ss_pred h
Confidence 3
No 27
>KOG3313 consensus Molecular chaperone Prefoldin, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=41.20 E-value=1.3e+02 Score=28.96 Aligned_cols=62 Identities=18% Similarity=0.279 Sum_probs=53.8
Q ss_pred HHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHh
Q 009551 462 EKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHE---ALMRQEDLLAYIDRQEEA 523 (532)
Q Consensus 462 ~~~~~l~~kP~~~p~eke~~l~~~~~Rv~~~e~~l~~tkkaL~~---al~kQ~El~ayie~~k~~ 523 (532)
|-|+...+||.--+.++..++++..-.-+-+|.-|.++++.|.+ .+.+=.||+.++.+++.+
T Consensus 22 edV~s~~~qp~~~~~~~l~~~~E~~~kYkfme~~l~a~~~~l~~kIPd~entLeiv~~l~~~~~~ 86 (187)
T KOG3313|consen 22 EDVESYISQPELESLEALKKLQERYGKYKFMEASLLAQKRRLKTKIPDIENTLEIVQTLIAKKDE 86 (187)
T ss_pred HHHHHHHcCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhCccc
Confidence 45778889999999999999999999999999999999999986 456778888888777544
No 28
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=39.67 E-value=91 Score=28.56 Aligned_cols=67 Identities=16% Similarity=0.268 Sum_probs=50.0
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 009551 445 TEVDLLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDL 513 (532)
Q Consensus 445 ~~~~~~~~~~~r~~~le~~~~~l~~kP~~~p~eke~~l~~~~~Rv~~~e~~l~~tkkaL~~al~kQ~El 513 (532)
...|+ ..+-+|+.+.|..+..+...-. -=..+=.-..+.+.+|+.|-..|.++...|++++.-=+.|
T Consensus 47 Va~~Q-~~L~~riKevd~~~~~l~~~~~-erqk~~~k~ae~L~kv~els~~L~~~~~lL~~~v~~ie~L 113 (131)
T PF10158_consen 47 VAFDQ-NALAKRIKEVDQEIAKLLQQMV-ERQKRFAKFAEQLEKVNELSQQLSRCQSLLNQTVPSIETL 113 (131)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455 6888999999999988876533 1133445567789999999999999999999887543333
No 29
>TIGR00034 aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase.
Probab=39.06 E-value=2.7e+02 Score=29.75 Aligned_cols=67 Identities=18% Similarity=0.275 Sum_probs=42.3
Q ss_pred ccCccccccCCCCCcEEEEecCccCcchhhhccCHHHHHHHHHHHHHHHHHhhcchhhhhhcCCCCceEEEEeCCCCC
Q 009551 68 YYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVG 145 (532)
Q Consensus 68 ~~p~~~~G~Dk~GRPV~i~rlg~~d~~~l~~~~t~~~~lr~~v~~lE~~l~~~~pa~~~~~~~~i~~~t~IiDl~G~s 145 (532)
..||.+.|.|++|++.++.-.|+-|..-..+-.....|.+..+......+. ..+.. -.+|+|++.-+
T Consensus 199 ~~~H~fl~~~~~G~~~~i~t~GN~~~hlilRGg~~pNy~~~di~~~~~~l~----------~~~lp-~~vmVD~SH~n 265 (344)
T TIGR00034 199 AAPHYFLSVTKDGQMAIVQTSGNPDGHIILRGGKKPNYSAADVAAAKKQLE----------KAGLP-PHLMIDFSHGN 265 (344)
T ss_pred hCCceeeecCCCCcEEEEECCCCCCEEEEecCCCCCCCCHHHHHHHHHHHH----------HcCCC-CeEEEeCCCcc
Confidence 567889999999999999988887766444432224444444444443332 11122 34899998754
No 30
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=38.01 E-value=2.5e+02 Score=28.35 Aligned_cols=54 Identities=13% Similarity=0.080 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009551 454 TKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMR 509 (532)
Q Consensus 454 ~~r~~~le~~~~~l~~kP~~~p~eke~~l~~~~~Rv~~~e~~l~~tkkaL~~al~k 509 (532)
=..++-+|+.+..-+. ..+-+..-||||.|..||..-|++-......-......
T Consensus 97 Ke~v~laEq~l~~~~~--~~~D~~wqEmLn~A~~kVneAE~ek~~ae~eH~~~~~~ 150 (239)
T PF05276_consen 97 KEMVALAEQSLMSDSN--WTFDPAWQEMLNHATQKVNEAEQEKTRAEREHQRRARI 150 (239)
T ss_pred HHHHHHHHHHHhcCCc--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467778887776444 56889999999999999999998888777665544333
No 31
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=37.51 E-value=98 Score=29.71 Aligned_cols=62 Identities=31% Similarity=0.418 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCChhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 009551 449 LLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELL----HAAVCRVDALEAELIATKKALHEALMRQE 511 (532)
Q Consensus 449 ~~~~~~~r~~~le~~~~~l~~kP~~~p~eke~~l----~~~~~Rv~~~e~~l~~tkkaL~~al~kQ~ 511 (532)
.+.++++++..+|+++..+..+...--..+++.+ ...-.-|+.|+.||.++++-+ ++|-+|-
T Consensus 119 r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~-~~LkkQ~ 184 (192)
T PF05529_consen 119 RVHSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEI-EALKKQS 184 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 3457888999999999988877654444444332 222233445555555433222 2444443
No 32
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=37.33 E-value=1.5e+02 Score=34.90 Aligned_cols=64 Identities=19% Similarity=0.311 Sum_probs=43.6
Q ss_pred HHHHHHHHHhcCCCCCCChh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHH
Q 009551 458 SELEEKVDTLQAKPSEMPYE---KEELLHAAVCRVDALEAELIATKKALHEALMRQ-EDLLAYIDRQE 521 (532)
Q Consensus 458 ~~le~~~~~l~~kP~~~p~e---ke~~l~~~~~Rv~~~e~~l~~tkkaL~~al~kQ-~El~ayie~~k 521 (532)
.++++-+..++-..-.+|.. -++.+++--.|++.++++++.|++.|.+.+.+- ++|.++-+..+
T Consensus 204 ~kv~~il~~~~f~~~~~p~~~~~p~e~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~ 271 (759)
T PF01496_consen 204 EKVKKILRSFGFERYDLPEDEGTPEEAIKELEEEIEELEKELEELEEELKKLLEKYAEELEAWYEYLR 271 (759)
T ss_dssp HHHHHHHHTTT--B----GGGGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccCceecCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677788888888777764 468999999999999999999999999876653 45555544444
No 33
>PF13080 DUF3926: Protein of unknown function (DUF3926)
Probab=35.38 E-value=33 Score=25.12 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Q 009551 497 IATKKALHEALMRQEDLLAYIDRQE 521 (532)
Q Consensus 497 ~~tkkaL~~al~kQ~El~ayie~~k 521 (532)
+.+|++|. +-||||.+|...++
T Consensus 13 QsAkqmln---ILQEELssy~~E~~ 34 (44)
T PF13080_consen 13 QSAKQMLN---ILQEELSSYPQEQP 34 (44)
T ss_pred HHHHHHHH---HHHHHHHhchhhcc
Confidence 46788876 67999999997665
No 34
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=34.77 E-value=1.6e+02 Score=27.24 Aligned_cols=69 Identities=26% Similarity=0.287 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCCC---ChhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 009551 448 DLLSSVTKRLSELEEKVDTLQAKPSEM---PYEKEELL---HAAVCRVDALEAELIATKKALHEALMRQEDLLAY 516 (532)
Q Consensus 448 ~~~~~~~~r~~~le~~~~~l~~kP~~~---p~eke~~l---~~~~~Rv~~~e~~l~~tkkaL~~al~kQ~El~ay 516 (532)
..|.++-+|++.||..|+.+..+=.+. ..+.+... -+.-+||..||.||+.+-+.|.+|..|=.+.-.-
T Consensus 35 ~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ 109 (143)
T PF12718_consen 35 QEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVK 109 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888888888777776553221 22233321 2356799999999999999999998776655433
No 35
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=33.70 E-value=3.8e+02 Score=24.62 Aligned_cols=62 Identities=24% Similarity=0.385 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 009551 452 SVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQE 521 (532)
Q Consensus 452 ~~~~r~~~le~~~~~l~~kP~~~p~eke~~l~~~~~Rv~~~e~~l~~tkkaL~~al~kQ~El~ayie~~k 521 (532)
.++..-..+|.-++.| +.+...-|+- ..||+.||.|+...-+-|.+++.+=++|++-|+..-
T Consensus 77 dIi~kakqIe~LIdsL----Pg~~~see~Q----~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~i 138 (144)
T PF11221_consen 77 DIIRKAKQIEYLIDSL----PGIEVSEEEQ----LKRIKELEEENEEAEEELQEAVKEAEELLKQVQELI 138 (144)
T ss_dssp HHHHHHHHHHHHHHHS----TTSSS-HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC----CCCCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666 3343333322 289999999999999999999999999999887654
No 36
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=33.13 E-value=1.4e+02 Score=30.53 Aligned_cols=22 Identities=18% Similarity=0.098 Sum_probs=17.2
Q ss_pred HHHhHHHHHHHHHHHHHhhhhh
Q 009551 506 ALMRQEDLLAYIDRQEEAKFRK 527 (532)
Q Consensus 506 al~kQ~El~ayie~~k~~k~~~ 527 (532)
+=.-|+-+.+++||.++||-+|
T Consensus 250 s~d~~egi~aflek~~~~~~~~ 271 (278)
T PLN03214 250 EPSIIKALGGVMERLSSGKEKK 271 (278)
T ss_pred CHHHHHHHHHHHHHHhhccccc
Confidence 3355888999999999887554
No 37
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=32.97 E-value=1.1e+02 Score=25.63 Aligned_cols=32 Identities=41% Similarity=0.471 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 009551 491 ALEAELIATKKALHEALMRQEDLLAYIDRQEE 522 (532)
Q Consensus 491 ~~e~~l~~tkkaL~~al~kQ~El~ayie~~k~ 522 (532)
.++-.|...+..|+++...|.+|.+.|++...
T Consensus 11 ~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~ 42 (92)
T PF14712_consen 11 LLEPDLDRLDQQLQELRQSQEELLQQIDRLNE 42 (92)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666677777777777777777766553
No 38
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=32.58 E-value=2.2e+02 Score=28.83 Aligned_cols=73 Identities=25% Similarity=0.328 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHhc---------CCCC-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 009551 451 SSVTKRLSELEEKVDTLQ---------AKPS-EMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQ 520 (532)
Q Consensus 451 ~~~~~r~~~le~~~~~l~---------~kP~-~~p~eke~~l~~~~~Rv~~~e~~l~~tkkaL~~al~kQ~El~ayie~~ 520 (532)
..++++....|.+|..|. +||- +|=..=+++|++.-.||..||+++..+|.-=.+||-.-++|.+-|=.+
T Consensus 145 ~~~~~~~~~ae~~v~~Lek~lkr~I~KSrPYfe~K~~~~~~l~~~k~~v~~Le~~v~~aK~~Y~~ALrnLE~ISeeIH~~ 224 (239)
T PF05276_consen 145 QRRARIYNEAEQRVQQLEKKLKRAIKKSRPYFELKAKFNQQLEEQKEKVEELEAKVKQAKSRYSEALRNLEQISEEIHEQ 224 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666655 3432 344456789999999999999999999999999999999999998666
Q ss_pred HHh
Q 009551 521 EEA 523 (532)
Q Consensus 521 k~~ 523 (532)
...
T Consensus 225 R~~ 227 (239)
T PF05276_consen 225 RRR 227 (239)
T ss_pred Hhh
Confidence 544
No 39
>PF13234 rRNA_proc-arch: rRNA-processing arch domain; PDB: 4A4K_E 4A4Z_A 2XGJ_B 3L9O_A.
Probab=31.97 E-value=1.7e+02 Score=29.64 Aligned_cols=69 Identities=19% Similarity=0.174 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCChhH-----HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHHH
Q 009551 451 SSVTKRLSELEEKVDTLQAKPSEMPYEK-----EELLHAAVCRVDALEAELIATK-------KALHEALMRQEDLLAYID 518 (532)
Q Consensus 451 ~~~~~r~~~le~~~~~l~~kP~~~p~ek-----e~~l~~~~~Rv~~~e~~l~~tk-------kaL~~al~kQ~El~ayie 518 (532)
..|++.|+||... ....++.+-+.| ..=+.+.+.|+..||..|..-. ..+++...+..+|.+-|+
T Consensus 183 ~~~~~~l~el~~r---~~~giP~LDPi~DmkI~d~~~~e~~~k~~~Le~rl~~~~~~~~~~~~~~~~~~~~k~~l~~~i~ 259 (268)
T PF13234_consen 183 KQVLKSLQELLKR---FPDGIPLLDPIKDMKIKDPEFVELVKKIEALEKRLSSHPLHKCPDFEEHYALYHEKAELQEEIK 259 (268)
T ss_dssp HHHHHHHHHHHHH---SSS--TCHHCHHHH----HHHHHHHHHHHHHHHHHHHSCHCCSSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCCCCccChHHhCCCCcHHHHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 4566666666665 233344444433 3445666777777777766544 456666666677777666
Q ss_pred HHHH
Q 009551 519 RQEE 522 (532)
Q Consensus 519 ~~k~ 522 (532)
..|+
T Consensus 260 ~Lk~ 263 (268)
T PF13234_consen 260 ALKR 263 (268)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 40
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=30.88 E-value=1.6e+02 Score=28.46 Aligned_cols=13 Identities=31% Similarity=0.516 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHhH
Q 009551 498 ATKKALHEALMRQ 510 (532)
Q Consensus 498 ~tkkaL~~al~kQ 510 (532)
+|.--|.+|.-||
T Consensus 142 ~~~~~~~~~~~~~ 154 (189)
T TIGR02132 142 KTQDELKETIQKQ 154 (189)
T ss_pred cchhHHHHHHHHH
Confidence 4444455554433
No 41
>PRK10884 SH3 domain-containing protein; Provisional
Probab=30.70 E-value=3.4e+02 Score=26.78 Aligned_cols=70 Identities=20% Similarity=0.251 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCC-------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 009551 454 TKRLSELEEKVDTLQAKPSEM-------PYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEA 523 (532)
Q Consensus 454 ~~r~~~le~~~~~l~~kP~~~-------p~eke~~l~~~~~Rv~~~e~~l~~tkkaL~~al~kQ~El~ayie~~k~~ 523 (532)
-.||.+||.++..|..|-.++ -.|..+-+.++=.-|..|+.|...-++-|..+-.+=++|-+-++.+++.
T Consensus 92 ~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555544444333333 2233444445555566677777766666666655555566666666654
No 42
>PRK09261 phospho-2-dehydro-3-deoxyheptonate aldolase; Validated
Probab=30.63 E-value=2.9e+02 Score=29.57 Aligned_cols=72 Identities=18% Similarity=0.276 Sum_probs=44.0
Q ss_pred ccCccccccCCCCCcEEEEecCccCcchhhhcc-CHHHHHHHHHHHHHHHHHhhcchhhhhhcCCCCceEEEEeCCCCC-
Q 009551 68 YYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVT-TMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVG- 145 (532)
Q Consensus 68 ~~p~~~~G~Dk~GRPV~i~rlg~~d~~~l~~~~-t~~~~lr~~v~~lE~~l~~~~pa~~~~~~~~i~~~t~IiDl~G~s- 145 (532)
..||.+.|.|++|++.++.-.|+-|..-..+-. +...|-+..+......+. +.. -..-+|+|++.-+
T Consensus 204 ~~~H~fl~~~~~G~~~~i~t~GN~~~hlilRGg~~~pNy~~~~i~~~~~~l~----------k~~-l~~~v~VD~SH~ns 272 (349)
T PRK09261 204 SAPHHFLGITKDGRSAIVSTTGNPDCHVILRGGNKGPNYDAESVAEAKERLE----------KAG-LPPRIMIDCSHANS 272 (349)
T ss_pred hCCceeeecCCCCcEEEEECCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHH----------HcC-CCCCEEEECCCccc
Confidence 357778899999999999988887776544432 344444444443333222 111 1355899998754
Q ss_pred cCCCC
Q 009551 146 LKNFS 150 (532)
Q Consensus 146 l~~~~ 150 (532)
-+++-
T Consensus 273 ~k~~~ 277 (349)
T PRK09261 273 GKDHK 277 (349)
T ss_pred Ccchh
Confidence 34443
No 43
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=30.57 E-value=3.3e+02 Score=29.78 Aligned_cols=90 Identities=16% Similarity=0.259 Sum_probs=64.0
Q ss_pred CCCCcEEEEecCccCcchhhhccCHHHHHHHHHHHHHHHHHhhcchhhhhhcCCCCceEEEEeCCCCCcCCCCh------
Q 009551 78 KEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSK------ 151 (532)
Q Consensus 78 k~GRPV~i~rlg~~d~~~l~~~~t~~~~lr~~v~~lE~~l~~~~pa~~~~~~~~i~~~t~IiDl~G~sl~~~~~------ 151 (532)
....|++++-+|--. .+.+.|+++++....+ ..--++|++-.|++-..+..
T Consensus 122 ~~~~P~vvilpGltg-------~S~~~YVr~lv~~a~~----------------~G~r~VVfN~RG~~g~~LtTpr~f~a 178 (409)
T KOG1838|consen 122 DGTDPIVVILPGLTG-------GSHESYVRHLVHEAQR----------------KGYRVVVFNHRGLGGSKLTTPRLFTA 178 (409)
T ss_pred CCCCcEEEEecCCCC-------CChhHHHHHHHHHHHh----------------CCcEEEEECCCCCCCCccCCCceeec
Confidence 356699999998632 3578999988754321 12456888998866554431
Q ss_pred HHHHHHHHHHHHhccccccccceeEEEcCCchhHHHHHHHH
Q 009551 152 NARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVK 192 (532)
Q Consensus 152 ~~~~lik~l~~ilqd~YPErL~~i~IINaP~~f~~lw~lVK 192 (532)
.-.+-++.+++.+...||.+ +++.+-.+.+-.+++|-+-
T Consensus 179 g~t~Dl~~~v~~i~~~~P~a--~l~avG~S~Gg~iL~nYLG 217 (409)
T KOG1838|consen 179 GWTEDLREVVNHIKKRYPQA--PLFAVGFSMGGNILTNYLG 217 (409)
T ss_pred CCHHHHHHHHHHHHHhCCCC--ceEEEEecchHHHHHHHhh
Confidence 12356778888888999998 8999999988888886553
No 44
>PHA00687 hypothetical protein
Probab=30.57 E-value=1.1e+02 Score=22.79 Aligned_cols=29 Identities=34% Similarity=0.470 Sum_probs=21.0
Q ss_pred CCChhHHHHHHHH----------HHHHHHHHHHHHHHHH
Q 009551 473 EMPYEKEELLHAA----------VCRVDALEAELIATKK 501 (532)
Q Consensus 473 ~~p~eke~~l~~~----------~~Rv~~~e~~l~~tkk 501 (532)
.+|+|--++|+.| +.||+++|.--+..|+
T Consensus 10 tlppeamrllqqaaqtpitradplarvkaiekatervkr 48 (56)
T PHA00687 10 TLPPEAMRLLQQAAQTPITRADPLARVKAIEKATERVKR 48 (56)
T ss_pred cCCHHHHHHHHHHhcCCccccChHHHHHHHHHHHHHHHH
Confidence 4788888888765 5788888876655554
No 45
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=28.95 E-value=1.9e+02 Score=27.74 Aligned_cols=113 Identities=18% Similarity=0.270 Sum_probs=66.6
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCcchhhhccccccccCCCCCCCCcchhhhHH-HHHH
Q 009551 377 TPEGIRARIWAAVMAFFMMFVTLFRSVAYRVTHRIPETSTGHDLNISEVAVDANEKEEFRPPSPSPSLTEVDLLS-SVTK 455 (532)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 455 (532)
+.+.+..++-...+-++.++..++..+...+ +.+..-.... + +...++..++.+. .+-+
T Consensus 47 a~dsiK~y~~~vh~pll~~~~~~~~~~~~~l-~~~~~~~~~v---------d----------~~~~a~i~e~~L~~el~~ 106 (204)
T PF04740_consen 47 AYDSIKNYFSEVHIPLLQGLILLLEEYQEAL-KFIKDFQSEV---------D----------SSSNAIIDEDFLESELKK 106 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHH---------c----------ccccccccHHHHHHHHHH
Confidence 4456667777778888888888888766555 3222111110 0 0012345566666 6678
Q ss_pred HHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009551 456 RLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMR 509 (532)
Q Consensus 456 r~~~le~~~~~l~~kP~~~p~eke~~l~~~~~Rv~~~e~~l~~tkkaL~~al~k 509 (532)
+|.++++.+..+...-..+-.+=.+++.-..-..+.+...+...|+-|++++.|
T Consensus 107 ~l~~~~~~~~~~~~~~~~~~~~vsdiv~~~~~~~~~~~~~~~~~~~~l~~~lek 160 (204)
T PF04740_consen 107 KLNQLKEQIEDLQDEINSILSSVSDIVSLPKPSSSSFIDSLEKAKKKLQETLEK 160 (204)
T ss_pred HHHHHHHHHHHHHHHHhhhccchHHHHhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888877766544444444453333333455666666677776666665
No 46
>PRK12822 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=28.91 E-value=1.6e+02 Score=31.46 Aligned_cols=83 Identities=13% Similarity=0.021 Sum_probs=48.0
Q ss_pred ccCccccccCCCCCcEEEEecCccCcchhhhccCHHHHHHHHHHHHHHHHHhhcchhhhhhcCCCCceEEEEeCCCCCc-
Q 009551 68 YYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGL- 146 (532)
Q Consensus 68 ~~p~~~~G~Dk~GRPV~i~rlg~~d~~~l~~~~t~~~~lr~~v~~lE~~l~~~~pa~~~~~~~~i~~~t~IiDl~G~sl- 146 (532)
..||.+.|.|++|++.++.-.|+-|..-+++-.....|-...+......+. .... .-.+++||+.-+-
T Consensus 204 ~~pH~Fl~i~~~G~~aiv~T~GN~~~HvILRGg~~PNY~~~~v~~a~~~l~----------~~~l-~~~vmVDcSH~NS~ 272 (356)
T PRK12822 204 RSPHLVTVPGLTGCISTLLSDGNPHGHIILRGGREPNYGLSDVTKASKLLH----------DEGL-NHRLIIDCSHGNSQ 272 (356)
T ss_pred cCCCeEEecCCCCcEEEEEcCCCCCceEEEeCCCCCCCCHHHHHHHHHHHH----------HCCC-CCcEEEECCCccCC
Confidence 357788899999999999999988877665543333333333333333222 1111 2448999987654
Q ss_pred CCCChHHHHHHHHHHH
Q 009551 147 KNFSKNARELILRLQK 162 (532)
Q Consensus 147 ~~~~~~~~~lik~l~~ 162 (532)
++..+ -..+++.++.
T Consensus 273 K~~~~-Q~~V~~~v~~ 287 (356)
T PRK12822 273 KVAKN-QISVARELCD 287 (356)
T ss_pred CCHHH-HHHHHHHHHH
Confidence 43332 2344444443
No 47
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=28.58 E-value=95 Score=30.24 Aligned_cols=30 Identities=47% Similarity=0.480 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Q 009551 476 YEKEELLHAAVCRVDALEAEL-------IATKKALHE 505 (532)
Q Consensus 476 ~eke~~l~~~~~Rv~~~e~~l-------~~tkkaL~~ 505 (532)
.||-.||.+|=.||+.|...| ++||++-+-
T Consensus 140 ~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~aA~k 176 (188)
T PF05335_consen 140 AEKTQLLEAAKRRVEELQRQLQAARADYEKTKKAAYK 176 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999998755 556665443
No 48
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=28.56 E-value=1.7e+02 Score=22.84 Aligned_cols=15 Identities=27% Similarity=0.621 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHhcCC
Q 009551 456 RLSELEEKVDTLQAK 470 (532)
Q Consensus 456 r~~~le~~~~~l~~k 470 (532)
|+.|||.++..+.+.
T Consensus 1 Ri~elEn~~~~~~~~ 15 (55)
T PF05377_consen 1 RIDELENELPRIESS 15 (55)
T ss_pred CHHHHHHHHHHHHHH
Confidence 678888888887765
No 49
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=28.17 E-value=1.2e+02 Score=29.20 Aligned_cols=53 Identities=17% Similarity=0.272 Sum_probs=36.0
Q ss_pred chhhhHHHHHHHHHHHHHHHH--HhcCCCCCCChh-HHHHHHHHHHHHHHHHHHHHHH
Q 009551 445 TEVDLLSSVTKRLSELEEKVD--TLQAKPSEMPYE-KEELLHAAVCRVDALEAELIAT 499 (532)
Q Consensus 445 ~~~~~~~~~~~r~~~le~~~~--~l~~kP~~~p~e-ke~~l~~~~~Rv~~~e~~l~~t 499 (532)
+..+.+..++||+.+|++=.+ -+... .+|.. |.++++++-..|.+.=+.|++-
T Consensus 51 s~re~i~~l~k~~~eL~~YLDP~~~e~~--~l~~~~K~~~ILa~e~~i~~~~~~Leki 106 (174)
T PF07426_consen 51 SKRERIKELFKRIEELNKYLDPNFIEEI--QLPDSAKLQIILAEEDEIKSTAELLEKI 106 (174)
T ss_pred cccHHHHHHHHHHHHHHHHcCchhhhhc--ccchHHHHHHHHHccHHHHHHHHHHHHH
Confidence 566778999999999987433 12222 36654 9999998877766655544443
No 50
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=28.16 E-value=3.2e+02 Score=28.72 Aligned_cols=75 Identities=20% Similarity=0.263 Sum_probs=45.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHhHHHH
Q 009551 448 DLLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCR--------------VDALEAELIATKKALHEALMRQEDL 513 (532)
Q Consensus 448 ~~~~~~~~r~~~le~~~~~l~~kP~~~p~eke~~l~~~~~R--------------v~~~e~~l~~tkkaL~~al~kQ~El 513 (532)
+.+-.+.+|.+.|+.++..|..-+.+|-.=.-+.|+.+=.. +..++.+|..-+..+++.-.+..|+
T Consensus 172 ~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~ 251 (312)
T smart00787 172 SIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSEL 251 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788899999999999888887622112233333344 4445555555555556666666666
Q ss_pred HHHHHHHHH
Q 009551 514 LAYIDRQEE 522 (532)
Q Consensus 514 ~ayie~~k~ 522 (532)
.+-|-..++
T Consensus 252 ~~~I~~ae~ 260 (312)
T smart00787 252 NTEIAEAEK 260 (312)
T ss_pred HHHHHHHHH
Confidence 666655444
No 51
>PRK09039 hypothetical protein; Validated
Probab=28.10 E-value=1.1e+02 Score=32.40 Aligned_cols=28 Identities=11% Similarity=0.203 Sum_probs=16.8
Q ss_pred chhhHHHHHHH--HHHHHHHHHHHHhhhhc
Q 009551 380 GIRARIWAAVM--AFFMMFVTLFRSVAYRV 407 (532)
Q Consensus 380 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 407 (532)
|+..-+.+.|| .||+.||.+.-+|.+.-
T Consensus 18 g~vd~~~~ll~~~~f~l~~f~~~q~fLs~~ 47 (343)
T PRK09039 18 GFVDALSTLLLVIMFLLTVFVVAQFFLSRE 47 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555544 46667777777665543
No 52
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=27.76 E-value=3.9e+02 Score=31.34 Aligned_cols=39 Identities=31% Similarity=0.274 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 009551 482 LHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQ 520 (532)
Q Consensus 482 l~~~~~Rv~~~e~~l~~tkkaL~~al~kQ~El~ayie~~ 520 (532)
+++|+.++..|++||+.+||-|.++.---+-|-..+|++
T Consensus 211 rmaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~L 249 (916)
T KOG0249|consen 211 RMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDL 249 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 578999999999999999999988765545555555543
No 53
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=27.68 E-value=2.9e+02 Score=31.03 Aligned_cols=35 Identities=31% Similarity=0.430 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHhHHHH
Q 009551 479 EELLHAAVCRVDALEAELIATKKA--------------LHEALMRQEDL 513 (532)
Q Consensus 479 e~~l~~~~~Rv~~~e~~l~~tkka--------------L~~al~kQ~El 513 (532)
++=|+.+-.+|..||.||..|++- |.+.|.+|.|=
T Consensus 461 ~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNeqL~~Q~ee 509 (518)
T PF10212_consen 461 EEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLASMNEQLAKQREE 509 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345888999999999999999984 55666666653
No 54
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=27.57 E-value=2.9e+02 Score=30.24 Aligned_cols=54 Identities=28% Similarity=0.418 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHhcC--CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009551 450 LSSVTKRLSELEEKVDTLQA--KPSEMPYEKEELLHAAVCRVDALEAELIATKKAL 503 (532)
Q Consensus 450 ~~~~~~r~~~le~~~~~l~~--kP~~~p~eke~~l~~~~~Rv~~~e~~l~~tkkaL 503 (532)
+..+-++|.+|+..+..|.. +...+|+++.++++......+.|.++|.+.+.-|
T Consensus 343 ~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~ 398 (451)
T PF03961_consen 343 LEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEEL 398 (451)
T ss_pred HHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666654 4567888888888877777777766666554433
No 55
>PHA02562 46 endonuclease subunit; Provisional
Probab=27.32 E-value=1.8e+02 Score=32.45 Aligned_cols=74 Identities=16% Similarity=0.284 Sum_probs=52.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 009551 447 VDLLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQE 521 (532)
Q Consensus 447 ~~~~~~~~~r~~~le~~~~~l~~kP~~~p~eke~~l~~~~~Rv~~~e~~l~~tkkaL~~al~kQ~El~ayie~~k 521 (532)
.+.++.+...+++|+++...|..+=.+.=..+++ ++....|+..++.++...+..|++...+..+|-+=|++.+
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~-~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~ 371 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDE-FNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQ 371 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777778888888888877764444344443 7778889999999999888888887666666665555554
No 56
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=26.91 E-value=5.3e+02 Score=26.56 Aligned_cols=37 Identities=22% Similarity=0.228 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHH
Q 009551 449 LLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAA 485 (532)
Q Consensus 449 ~~~~~~~r~~~le~~~~~l~~kP~~~p~eke~~l~~~ 485 (532)
.++-.+-|+..|+..++..+.+-+++.+.+++.|-+.
T Consensus 53 ql~ll~~~~k~L~aE~~qwqk~~peii~~n~~VL~~l 89 (268)
T PF11802_consen 53 QLSLLMMRVKCLTAELEQWQKRTPEIIPLNPEVLLTL 89 (268)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCcCCCCHHHHHHH
Confidence 4577889999999999999999999999888877643
No 57
>PF12297 EVC2_like: Ellis van Creveld protein 2 like protein; InterPro: IPR022076 This family of proteins is found in eukaryotes. Proteins in this family are typically between 571 and 1310 amino acids in length. There are two conserved sequence motifs: LPA and ELH. EVC2 is implicated in Ellis van Creveld chondrodysplastic dwarfism in humans. Mutations in this protein can give rise to this congenital condition. LIMBIN is a protein which shares around 80% sequence homology with EVC2 and it is implicated in a similar condition in bovine chondrodysplastic dwarfism.
Probab=26.60 E-value=3.1e+02 Score=30.06 Aligned_cols=23 Identities=9% Similarity=0.189 Sum_probs=15.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHh
Q 009551 381 IRARIWAAVMAFFMMFVTLFRSV 403 (532)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~ 403 (532)
..+.+++.++++|++++++|-+.
T Consensus 67 aagFfvaflvslVL~~l~~f~l~ 89 (429)
T PF12297_consen 67 AAGFFVAFLVSLVLTWLCFFLLA 89 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777778887777776553
No 58
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=26.29 E-value=4.3e+02 Score=28.96 Aligned_cols=74 Identities=30% Similarity=0.382 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCC---CCCCChhHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHH
Q 009551 448 DLLSSVTKRLSELEEKVDTLQAK---PSEMPYEKEELL----------HAAVCRVDALEAELIATKKALHEA-LMRQEDL 513 (532)
Q Consensus 448 ~~~~~~~~r~~~le~~~~~l~~k---P~~~p~eke~~l----------~~~~~Rv~~~e~~l~~tkkaL~~a-l~kQ~El 513 (532)
-.+.++||||+.||..-.-|+.| |..-|.---++- .+--.-||-|-+|.+.-|+-|-.| ..-|+++
T Consensus 201 alvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~ 280 (552)
T KOG2129|consen 201 ALVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKL 280 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999877777654 433333333332 112234677777777777776544 5668888
Q ss_pred HHHHHHHH
Q 009551 514 LAYIDRQE 521 (532)
Q Consensus 514 ~ayie~~k 521 (532)
+-|.+..+
T Consensus 281 ~qy~~Ee~ 288 (552)
T KOG2129|consen 281 MQYRAEEV 288 (552)
T ss_pred HHHHHHHh
Confidence 88886554
No 59
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=26.24 E-value=86 Score=29.95 Aligned_cols=32 Identities=38% Similarity=0.417 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009551 477 EKEELLHAAVCRVDALEAELIATKKALHEALMR 509 (532)
Q Consensus 477 eke~~l~~~~~Rv~~~e~~l~~tkkaL~~al~k 509 (532)
|=|..||.|+.|-=-||.||+. |..|.+.+-|
T Consensus 4 D~EsklN~AIERnalLE~ELdE-KE~L~~~~QR 35 (166)
T PF04880_consen 4 DFESKLNQAIERNALLESELDE-KENLREEVQR 35 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHCH--
T ss_pred HHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHH
Confidence 4578899999999999999976 8888777755
No 60
>PF14282 FlxA: FlxA-like protein
Probab=25.70 E-value=3e+02 Score=24.02 Aligned_cols=52 Identities=13% Similarity=0.369 Sum_probs=38.2
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhcCCCCCCCh-hHHHHHHHHHHHHHHHHHHHH
Q 009551 445 TEVDLLSSVTKRLSELEEKVDTLQAKPSEMPY-EKEELLHAAVCRVDALEAELI 497 (532)
Q Consensus 445 ~~~~~~~~~~~r~~~le~~~~~l~~kP~~~p~-eke~~l~~~~~Rv~~~e~~l~ 497 (532)
.....+..+-+++.+|.+++..|...- .|++ +|.+....=-.-|..||+.|.
T Consensus 16 ~~~~~I~~L~~Qi~~Lq~ql~~l~~~~-~~~~e~k~~q~q~Lq~QI~~LqaQI~ 68 (106)
T PF14282_consen 16 SSDSQIEQLQKQIKQLQEQLQELSQDS-DLDAEQKQQQIQLLQAQIQQLQAQIA 68 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccc-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 336678899999999999999999952 3444 566555555557777787775
No 61
>PF15294 Leu_zip: Leucine zipper
Probab=25.42 E-value=1.9e+02 Score=29.90 Aligned_cols=61 Identities=36% Similarity=0.468 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 009551 455 KRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEAKFR 526 (532)
Q Consensus 455 ~r~~~le~~~~~l~~kP~~~p~eke~~l~~~~~Rv~~~e~~l~~tkkaL~~al~kQ~El~ayie~~k~~k~~ 526 (532)
+-+.+||.++..|. .|=|.-+++.-.--++||.+|..| +|+-|..|++ ++-.++-=++||+
T Consensus 190 q~l~dLE~k~a~lK-------~e~ek~~~d~~~~~k~L~e~L~~~---KhelL~~Qeq-L~~aekeLekKfq 250 (278)
T PF15294_consen 190 QDLSDLENKMAALK-------SELEKALQDKESQQKALEETLQSC---KHELLRVQEQ-LSLAEKELEKKFQ 250 (278)
T ss_pred cchhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhcchh-hhcchhhHHHHhC
Confidence 44678888888884 344566777777889999999998 5677888888 6666665566665
No 62
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=25.35 E-value=3.1e+02 Score=22.76 Aligned_cols=43 Identities=19% Similarity=0.309 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 009551 481 LLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEA 523 (532)
Q Consensus 481 ~l~~~~~Rv~~~e~~l~~tkkaL~~al~kQ~El~ayie~~k~~ 523 (532)
.|++.-..++.++.++....+=..+++.++.++++=++.+.++
T Consensus 27 ~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~ 69 (90)
T PF06103_consen 27 TLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEK 69 (90)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566666677777777777777788888888888777666543
No 63
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=25.31 E-value=5.4e+02 Score=24.29 Aligned_cols=28 Identities=29% Similarity=0.426 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009551 480 ELLHAAVCRVDALEAELIATKKALHEAL 507 (532)
Q Consensus 480 ~~l~~~~~Rv~~~e~~l~~tkkaL~~al 507 (532)
+.+...-.|+++++.+.....+=+.+..
T Consensus 123 ~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 123 ELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566665555555444444433
No 64
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=25.05 E-value=3.7e+02 Score=24.63 Aligned_cols=51 Identities=20% Similarity=0.309 Sum_probs=39.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH----HhHHHHHHHHHHHHHhhh
Q 009551 475 PYEKEELLHAAVCRVDALEAELI----ATKKALHEAL----MRQEDLLAYIDRQEEAKF 525 (532)
Q Consensus 475 p~eke~~l~~~~~Rv~~~e~~l~----~tkkaL~~al----~kQ~El~ayie~~k~~k~ 525 (532)
|.=|++++..--..+..+|.||. ..||++.+.- .....|-+++++.+....
T Consensus 15 e~~K~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r~ 73 (131)
T PF11068_consen 15 EKWKEELLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQERL 73 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHH
Confidence 55689999999999999999886 4788888865 555667788887775543
No 65
>PRK12756 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=24.97 E-value=2e+02 Score=30.66 Aligned_cols=68 Identities=12% Similarity=0.127 Sum_probs=43.6
Q ss_pred ccCccccccCCCCCcEEEEecCccCcchhhhccCHHHHHHHHHHHHHHHHHhhcchhhhhhcCCCCceEEEEeCCCCCc
Q 009551 68 YYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGL 146 (532)
Q Consensus 68 ~~p~~~~G~Dk~GRPV~i~rlg~~d~~~l~~~~t~~~~lr~~v~~lE~~l~~~~pa~~~~~~~~i~~~t~IiDl~G~sl 146 (532)
..||.+.|.|++|++.++.-.|+-|..-+++-.....|-...+......+. +.... -.+++||+.-+-
T Consensus 203 ~~~H~Fl~~~~~G~~aiv~T~GN~~~HvILRGg~~PNY~~~~v~~a~~~l~----------~~~l~-~~imVDcSH~NS 270 (348)
T PRK12756 203 RASHMFLSPDKDGQMTIYQTSGNPYGHIIMRGGKKPNYHAEDIAAACDTLR----------EFDLP-EHLVVDFSHGNC 270 (348)
T ss_pred hCCCeeEeeCCCCcEEEEEcCCCCCeEEEeeCCCCCCCCHHHHHHHHHHHH----------HCCCC-CcEEEECCCccc
Confidence 467888999999999999999988877666543333444444443333332 11122 448999987654
No 66
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=24.27 E-value=1.1e+02 Score=20.94 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=20.4
Q ss_pred CCHHHHHHHhhhcCCCHHHHHHHH
Q 009551 15 FNVATSLRFLKARKFDIDKAKHMW 38 (532)
Q Consensus 15 ~DD~~LLRFLrArkfDvekA~~~l 38 (532)
.+.....+-|+++++|+++|...|
T Consensus 13 f~~~~~~~AL~~~~~d~~~A~~~L 36 (38)
T cd00194 13 FSREEARKALRATNNNVERAVEWL 36 (38)
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHH
Confidence 557778999999999999998765
No 67
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=24.24 E-value=2.2e+02 Score=27.25 Aligned_cols=16 Identities=44% Similarity=0.663 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHH
Q 009551 449 LLSSVTKRLSELEEKV 464 (532)
Q Consensus 449 ~~~~~~~r~~~le~~~ 464 (532)
.+..+=+||++||..|
T Consensus 6 ~l~~Le~Ri~~LE~~v 21 (174)
T PF07426_consen 6 ALDILEKRIEELERRV 21 (174)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3567788999999999
No 68
>PRK10884 SH3 domain-containing protein; Provisional
Probab=24.17 E-value=2.1e+02 Score=28.24 Aligned_cols=16 Identities=31% Similarity=0.273 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 009551 485 AVCRVDALEAELIATK 500 (532)
Q Consensus 485 ~~~Rv~~~e~~l~~tk 500 (532)
+-..++.||+++...|
T Consensus 151 ~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 151 AQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444333
No 69
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=23.89 E-value=2.9e+02 Score=31.39 Aligned_cols=69 Identities=20% Similarity=0.275 Sum_probs=44.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhcCCCCCCC--hhHHHH--HHHHHHHHHHHHHHHHH---HHHHHHHHHHhHHHHHH
Q 009551 446 EVDLLSSVTKRLSELEEKVDTLQAKPSEMP--YEKEEL--LHAAVCRVDALEAELIA---TKKALHEALMRQEDLLA 515 (532)
Q Consensus 446 ~~~~~~~~~~r~~~le~~~~~l~~kP~~~p--~eke~~--l~~~~~Rv~~~e~~l~~---tkkaL~~al~kQ~El~a 515 (532)
++.+ ..++-||.+|+.+++++--||+..| +..++. =+.-+.|+--+|...+. -=-+|-+.+++-..++.
T Consensus 525 SaGH-ldm~~RiK~LQ~rlDqi~Gk~~~~~~~~~~~~~~~~~Sm~~Rl~~vEkqv~~le~Kld~l~~~~~q~l~l~~ 600 (654)
T KOG1419|consen 525 SAGH-LDMLSRIKELQARLDQIVGKPPVSTDRPADSEIPEKLSMMGRLVKVEKQVQSLEKKLDLLVEILMQCLRLMM 600 (654)
T ss_pred hhhh-HHHHHHHHHHHHHHHHHcCCCCCCCCCccccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3455 5789999999999999999998777 333333 12234555555544333 33356677777666664
No 70
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=23.64 E-value=1e+02 Score=28.01 Aligned_cols=34 Identities=21% Similarity=0.127 Sum_probs=24.8
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHhhhhccccC
Q 009551 378 PEGIRARIWAAVMAFFMMFVTLFRSVAYRVTHRI 411 (532)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (532)
..+-..-|+.|+||-|++++.++-++.+|+.|+-
T Consensus 62 s~~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk~ 95 (122)
T PF01102_consen 62 SEPAIIGIIFGVMAGVIGIILLISYCIRRLRKKS 95 (122)
T ss_dssp S-TCHHHHHHHHHHHHHHHHHHHHHHHHHHS---
T ss_pred cccceeehhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3456788999999999999888888787776653
No 71
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=23.06 E-value=2.6e+02 Score=25.88 Aligned_cols=58 Identities=29% Similarity=0.329 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 009551 452 SVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDL 513 (532)
Q Consensus 452 ~~~~r~~~le~~~~~l~~kP~~~p~eke~~l~~~~~Rv~~~e~~l~~tkkaL~~al~kQ~El 513 (532)
....|..++|+++..|...- ..||+=+..=-.|+..||.||.++...|.++-.+.++-
T Consensus 11 ~a~~r~e~~e~~~K~le~~~----~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~ 68 (143)
T PF12718_consen 11 NAQDRAEELEAKVKQLEQEN----EQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEES 68 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 44677888888888877653 36777777777888888888888887777776665544
No 72
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=23.00 E-value=91 Score=31.78 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 009551 484 AAVCRVDALEAELIATKKALHEALMRQ 510 (532)
Q Consensus 484 ~~~~Rv~~~e~~l~~tkkaL~~al~kQ 510 (532)
+|+.||-|||.||..-+.=+-.-+..|
T Consensus 119 ~AlqKIsALEdELs~LRaQIA~IV~~q 145 (253)
T PF05308_consen 119 AALQKISALEDELSRLRAQIAKIVAAQ 145 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 577888888888876554333333333
No 73
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=22.86 E-value=2.7e+02 Score=26.48 Aligned_cols=50 Identities=18% Similarity=0.270 Sum_probs=37.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 009551 446 EVDLLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAEL 496 (532)
Q Consensus 446 ~~~~~~~~~~r~~~le~~~~~l~~kP~~~p~eke~~l~~~~~Rv~~~e~~l 496 (532)
.-+.+...-+|+++||+++..|..+ -++-++=++++...=.|+++|+..+
T Consensus 109 ~l~~L~e~snki~kLe~~~k~L~d~-Iv~~~~i~e~IKd~de~L~~I~d~i 158 (163)
T PF03233_consen 109 LLPTLEEISNKIRKLETEVKKLKDN-IVTEKLIEELIKDFDERLKEIRDKI 158 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhh-ccccHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566677999999999999999 6666677777777777777666554
No 74
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=22.65 E-value=2.2e+02 Score=26.91 Aligned_cols=32 Identities=6% Similarity=0.310 Sum_probs=23.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhhccccC
Q 009551 380 GIRARIWAAVMAFFMMFVTLFRSVAYRVTHRI 411 (532)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (532)
.+.++++..+++|++-++-+-|++..++.+-+
T Consensus 8 ~~~sqifw~iI~FlILy~ll~kf~~ppI~~iL 39 (155)
T PRK06569 8 TYYSQIFWLIVTFGLLYIFVYKFITPKAEEIF 39 (155)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 35578888888888877777777666665443
No 75
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=22.48 E-value=1e+02 Score=24.37 Aligned_cols=13 Identities=31% Similarity=0.759 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHH
Q 009551 452 SVTKRLSELEEKV 464 (532)
Q Consensus 452 ~~~~r~~~le~~~ 464 (532)
++=+||+.||..+
T Consensus 29 tiEqRLa~LE~rL 41 (60)
T PF11471_consen 29 TIEQRLAALEQRL 41 (60)
T ss_pred CHHHHHHHHHHHH
Confidence 4667888887653
No 76
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=22.44 E-value=4.1e+02 Score=21.31 Aligned_cols=34 Identities=29% Similarity=0.450 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009551 451 SSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKA 502 (532)
Q Consensus 451 ~~~~~r~~~le~~~~~l~~kP~~~p~eke~~l~~~~~Rv~~~e~~l~~tkka 502 (532)
+.+.+||.++|.+++. --.|++.||...++..++
T Consensus 2 ~~i~e~l~~ie~~l~~------------------~~~~i~~lE~~~~~~e~~ 35 (71)
T PF10779_consen 2 QDIKEKLNRIETKLDN------------------HEERIDKLEKRDAANEKD 35 (71)
T ss_pred HHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHH
Confidence 3456788888888876 225777777776666555
No 77
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=22.37 E-value=1.3e+02 Score=20.55 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=19.4
Q ss_pred CCHHHHHHHhhhcCCCHHHHHHHH
Q 009551 15 FNVATSLRFLKARKFDIDKAKHMW 38 (532)
Q Consensus 15 ~DD~~LLRFLrArkfDvekA~~~l 38 (532)
.+....++-|+.+++|+++|...|
T Consensus 13 f~~~~a~~aL~~~~~d~~~A~~~L 36 (37)
T smart00165 13 FSREEALKALRAANGNVERAAEYL 36 (37)
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHH
Confidence 566678899999999999987654
No 78
>smart00353 HLH helix loop helix domain.
Probab=21.44 E-value=2.6e+02 Score=20.41 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=20.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHH
Q 009551 474 MPYEKEELLHAAVCRVDALEAELI 497 (532)
Q Consensus 474 ~p~eke~~l~~~~~Rv~~~e~~l~ 497 (532)
-..+|-.+|..|++=|+.|+.++.
T Consensus 29 ~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 29 KKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHh
Confidence 446899999999999999988764
No 79
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=21.40 E-value=1.5e+02 Score=23.56 Aligned_cols=36 Identities=14% Similarity=0.098 Sum_probs=28.7
Q ss_pred hhhhhhccCCCCCHHHHHHHhhhcCCCHHHHHHHHHH
Q 009551 4 MQAVIFFFNPCFNVATSLRFLKARKFDIDKAKHMWAE 40 (532)
Q Consensus 4 ~qA~~~~l~~~~DD~~LLRFLrArkfDvekA~~~l~~ 40 (532)
.|.+...... +.|+-+..-|+-|+.|...|.++|..
T Consensus 9 VQ~iKEiv~~-hse~eIya~L~ecnMDpnea~qrLL~ 44 (60)
T PF06972_consen 9 VQSIKEIVGC-HSEEEIYAMLKECNMDPNEAVQRLLS 44 (60)
T ss_pred HHHHHHHhcC-CCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4666666666 66677899999999999999998854
No 80
>PF15027 DUF4525: Domain of unknown function (DUF4525)
Probab=21.31 E-value=91 Score=28.47 Aligned_cols=23 Identities=43% Similarity=0.549 Sum_probs=18.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhc
Q 009551 446 EVDLLSSVTKRLSELEEKVDTLQ 468 (532)
Q Consensus 446 ~~~~~~~~~~r~~~le~~~~~l~ 468 (532)
-+-.+-.+|+||..||.||+.|-
T Consensus 84 iAVLLddiLqRl~kLE~kvd~lv 106 (138)
T PF15027_consen 84 IAVLLDDILQRLVKLESKVDNLV 106 (138)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHe
Confidence 34456789999999999999853
No 81
>PF13514 AAA_27: AAA domain
Probab=21.13 E-value=3.4e+02 Score=33.47 Aligned_cols=56 Identities=20% Similarity=0.251 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009551 450 LSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEA 506 (532)
Q Consensus 450 ~~~~~~r~~~le~~~~~l~~kP~~~p~eke~~l~~~~~Rv~~~e~~l~~tkkaL~~a 506 (532)
..+.+.++++|+.....|...|. +|++=.+-+..+..++..++.+|...+.-+...
T Consensus 213 ~~p~~~~~~~l~~~l~~l~~~~~-~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l 268 (1111)
T PF13514_consen 213 AWPLLAELQQLEAELAELGEVPD-FPEDGAERLEQLEEELAEAQAQLERLQEELAQL 268 (1111)
T ss_pred HhHHHHHHHHHHHHHHhcCCcCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778899999999999977775 999999999988888888888777776655543
No 82
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=20.90 E-value=1.5e+02 Score=20.56 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=16.4
Q ss_pred CCHHHHHHHhhhcCCCHHHHHHHH
Q 009551 15 FNVATSLRFLKARKFDIDKAKHMW 38 (532)
Q Consensus 15 ~DD~~LLRFLrArkfDvekA~~~l 38 (532)
.+...-.+-|+++++|+++|...|
T Consensus 14 f~~~~~~~AL~~~~~nve~A~~~L 37 (37)
T PF00627_consen 14 FSREQAREALRACNGNVERAVDWL 37 (37)
T ss_dssp S-HHHHHHHHHHTTTSHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHhC
Confidence 344566777888888888887643
No 83
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=20.86 E-value=8.5e+02 Score=24.33 Aligned_cols=58 Identities=24% Similarity=0.272 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 009551 450 LSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYI 517 (532)
Q Consensus 450 ~~~~~~r~~~le~~~~~l~~kP~~~p~eke~~l~~~~~Rv~~~e~~l~~tkkaL~~al~kQ~El~ayi 517 (532)
+..+..+.+++|++...--.+-. |++-..++.|+..||..+...+.. +..|.+.++-+
T Consensus 61 ~~~~~~~~~k~e~~A~~Al~~g~------E~LAr~al~~~~~le~~~~~~~~~----~~~~~~~~~~l 118 (225)
T COG1842 61 LEEAQARAEKLEEKAELALQAGN------EDLAREALEEKQSLEDLAKALEAE----LQQAEEQVEKL 118 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCC------HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 46777888888888776555543 999999999999988776655544 44444444333
No 84
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=20.77 E-value=2.2e+02 Score=31.73 Aligned_cols=42 Identities=10% Similarity=0.179 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCChhHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 009551 455 KRLSELEEKVDTLQAKPSEMPYEKE---ELLHAAVCRVDALEAELIATKKAL 503 (532)
Q Consensus 455 ~r~~~le~~~~~l~~kP~~~p~eke---~~l~~~~~Rv~~~e~~l~~tkkaL 503 (532)
.+..|||+++..|. .|.+ ..+.+--.||+.||.|+..-|.-+
T Consensus 76 ~kasELEKqLaaLr-------qElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 76 VTAAQMQKQYEEIR-------RELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 37888888888882 4445 555566677887777777665555
No 85
>KOG4182 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.65 E-value=1.5e+02 Score=32.90 Aligned_cols=24 Identities=38% Similarity=0.501 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 009551 483 HAAVCRVDALEAELIATKKALHEA 506 (532)
Q Consensus 483 ~~~~~Rv~~~e~~l~~tkkaL~~a 506 (532)
.||+.|+|..-+.|+++|+.|+++
T Consensus 108 iAaLaRldn~kQkleaA~esLQda 131 (828)
T KOG4182|consen 108 IAALARLDNKKQKLEAAKESLQDA 131 (828)
T ss_pred HHHHHHhccHHHHHHHHHHHHHhh
Confidence 467888888888888888777654
No 86
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=20.27 E-value=9.7e+02 Score=24.76 Aligned_cols=43 Identities=23% Similarity=0.303 Sum_probs=28.4
Q ss_pred CCCCceEEEEeCCCCCcCCCChHHHHHHHHHHHHhccccccccc
Q 009551 130 RHIDSSTSILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLH 173 (532)
Q Consensus 130 ~~i~~~t~IiDl~G~sl~~~~~~~~~lik~l~~ilqd~YPErL~ 173 (532)
..+...-+|+|- |+|+..-......+++.+..+-.-.||-.++
T Consensus 175 ~GI~~~~IilDP-GiGF~k~~~~n~~ll~~l~~l~~lg~Pilvg 217 (282)
T PRK11613 175 AGIAKEKLLLDP-GFGFGKNLSHNYQLLARLAEFHHFNLPLLVG 217 (282)
T ss_pred cCCChhhEEEeC-CCCcCCCHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 345555799998 6776443345678888887766666775444
Done!