Query 009551
Match_columns 532
No_of_seqs 327 out of 1415
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 07:43:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009551.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009551hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q8g_A CRAL-TRIO domain-contai 100.0 4.9E-53 1.7E-57 435.9 15.5 242 12-254 56-304 (320)
2 1aua_A Phosphatidylinositol tr 100.0 2.6E-52 8.8E-57 424.6 19.2 242 12-254 47-289 (296)
3 1olm_A SEC14-like protein 2; l 100.0 9E-45 3.1E-49 384.5 20.0 228 4-235 20-249 (403)
4 1r5l_A Alpha-TTP, protein (alp 100.0 2.1E-42 7.2E-47 344.4 17.0 207 12-233 28-235 (262)
5 3hx3_A Retinaldehyde-binding p 100.0 3.5E-42 1.2E-46 354.2 17.9 208 13-235 88-296 (316)
6 3pg7_A Neurofibromin; SEC lipi 99.1 1.6E-10 5.5E-15 115.2 7.3 136 66-223 8-144 (256)
7 3peg_A Neurofibromin; SEC14 do 98.8 2.4E-09 8.3E-14 108.4 4.2 132 70-223 31-163 (290)
8 2bni_A General control protein 76.1 2.9 0.0001 28.1 3.5 15 455-469 1-15 (34)
9 3c3g_A Alpha/beta peptide with 74.4 3.8 0.00013 27.3 3.7 14 456-469 1-14 (33)
10 2wq1_A General control protein 73.9 4.9 0.00017 26.8 4.1 14 456-469 1-14 (33)
11 3c3f_A Alpha/beta peptide with 73.4 5.1 0.00017 26.8 4.1 15 455-469 1-15 (34)
12 2oxj_A Hybrid alpha/beta pepti 72.9 4.3 0.00015 27.2 3.7 15 455-469 1-15 (34)
13 1uo4_A General control protein 72.3 4 0.00014 27.4 3.5 15 455-469 1-15 (34)
14 2hy6_A General control protein 71.2 1.1 3.7E-05 30.1 0.6 15 455-469 1-15 (34)
15 3m48_A General control protein 68.8 4.9 0.00017 26.8 3.3 13 456-468 1-13 (33)
16 1kd8_A GABH AIV, GCN4 acid bas 66.3 7.7 0.00026 26.3 3.9 14 455-468 1-14 (36)
17 3a8y_C BAG family molecular ch 65.7 18 0.00063 32.2 7.5 66 449-521 35-109 (142)
18 1m62_A BAG-family molecular ch 65.3 20 0.00069 29.3 7.1 65 448-519 11-84 (87)
19 1nkp_A C-MYC, MYC proto-oncoge 63.1 35 0.0012 27.7 8.3 66 455-520 16-85 (88)
20 1m7k_A Silencer of death domai 63.0 15 0.0005 30.9 6.0 66 447-519 23-97 (99)
21 1kd8_B GABH BLL, GCN4 acid bas 60.7 16 0.00056 24.8 4.7 15 455-469 1-15 (36)
22 1nkp_B MAX protein, MYC proto- 59.0 46 0.0016 26.4 8.3 63 455-517 12-77 (83)
23 2r2v_A GCN4 leucine zipper; co 55.7 18 0.00061 24.3 4.1 16 455-470 1-16 (34)
24 3htk_A Structural maintenance 50.2 74 0.0025 23.4 7.7 46 478-523 10-55 (60)
25 1yke_B RNA polymerase II holoe 49.5 1.1E+02 0.0038 27.3 10.0 66 448-521 53-126 (151)
26 1wgl_A TOLL-interacting protei 48.2 14 0.00049 27.9 3.3 28 13-40 21-48 (59)
27 2p2u_A HOST-nuclease inhibitor 48.0 1.3E+02 0.0044 27.3 10.4 70 442-524 10-79 (171)
28 1ykh_B RNA polymerase II holoe 47.8 1.4E+02 0.0047 26.0 10.1 66 448-521 53-126 (132)
29 1ugo_A BCL2-associated athanog 46.4 37 0.0013 28.5 5.8 66 448-520 18-92 (99)
30 1uk5_A BAG-family molecular ch 45.9 48 0.0017 28.3 6.5 67 448-521 30-105 (111)
31 3etw_A Adhesin A; antiparallel 41.8 64 0.0022 27.9 6.8 73 451-523 5-107 (119)
32 3rrk_A V-type ATPase 116 kDa s 40.0 1.1E+02 0.0037 30.6 9.5 65 458-522 199-269 (357)
33 1ic2_A Tropomyosin alpha chain 39.6 82 0.0028 24.9 6.8 58 451-512 16-73 (81)
34 2dhy_A CUE domain-containing p 38.9 32 0.0011 26.7 4.0 29 13-41 30-58 (67)
35 1otr_A Protein CUE2; protein-p 38.6 30 0.001 25.2 3.6 28 14-41 17-44 (49)
36 2di0_A Activating signal coint 35.2 30 0.001 27.2 3.3 36 4-40 17-52 (71)
37 2q9q_C DNA replication complex 34.0 96 0.0033 28.7 7.3 27 473-499 20-46 (196)
38 1nyh_A Regulatory protein SIR4 33.7 64 0.0022 27.9 5.4 40 487-526 119-158 (166)
39 2oqq_A Transcription factor HY 32.6 30 0.001 24.3 2.6 15 454-468 16-30 (42)
40 1pl5_A Regulatory protein SIR4 31.4 21 0.00073 30.2 2.0 40 487-526 95-134 (142)
41 2z5i_I TM, tropomyosin alpha-1 30.8 34 0.0012 23.9 2.6 20 483-502 20-39 (40)
42 2ke4_A CDC42-interacting prote 30.1 67 0.0023 26.7 4.9 45 461-506 42-88 (98)
43 2ql2_B Neurod1, neurogenic dif 29.6 64 0.0022 24.2 4.3 43 455-497 12-58 (60)
44 3u1c_A Tropomyosin alpha-1 cha 28.2 1E+02 0.0036 25.5 5.8 57 452-512 20-76 (101)
45 1hlo_A Protein (transcription 26.9 80 0.0027 24.8 4.7 47 455-501 22-71 (80)
46 2bwb_A Ubiquitin-like protein 26.4 59 0.002 23.1 3.4 25 15-39 20-44 (46)
47 4aya_A DNA-binding protein inh 26.3 89 0.003 26.0 4.9 45 454-498 34-82 (97)
48 2dah_A Ubiquilin-3; UBA domain 25.9 71 0.0024 23.5 3.9 25 16-40 23-47 (54)
49 2l5g_B Putative uncharacterize 25.7 1.2E+02 0.0039 21.4 4.6 35 477-515 3-37 (42)
50 3hf0_A GCN4-PLI SIDE chain seq 25.5 1.4E+02 0.0047 19.3 4.5 28 478-505 6-33 (34)
51 1z96_A DNA-damage, UBA-domain 25.4 72 0.0025 21.2 3.6 24 15-38 16-39 (40)
52 1wr1_B Ubiquitin-like protein 24.5 72 0.0025 23.9 3.7 26 15-40 30-55 (58)
53 2ovc_A Potassium voltage-gated 24.5 33 0.0011 23.0 1.6 20 451-470 6-25 (33)
54 3ok8_A Brain-specific angiogen 24.4 84 0.0029 30.0 5.0 46 487-532 130-188 (222)
55 2knz_A Ubiquilin-4; cytoplasm, 23.6 78 0.0027 23.0 3.7 25 16-40 25-49 (53)
56 2dna_A Unnamed protein product 23.4 82 0.0028 24.4 3.9 26 15-40 32-57 (67)
57 1g8x_A Myosin II heavy chain f 22.3 3E+02 0.01 32.0 10.1 61 453-516 819-887 (1010)
58 2pnv_A Small conductance calci 22.0 45 0.0015 23.7 1.9 17 452-468 20-36 (43)
59 3t98_B Nucleoporin NUP58/NUP45 21.9 2.3E+02 0.008 23.2 6.7 60 449-512 20-79 (93)
60 1mdy_A Protein (MYOD BHLH doma 21.9 1.3E+02 0.0045 23.1 4.8 42 455-496 22-66 (68)
61 1am9_A Srebp-1A, protein (ster 21.6 2.6E+02 0.0089 22.0 6.8 24 475-498 38-61 (82)
62 1v92_A NSFL1 cofactor P47; 3-h 21.4 63 0.0022 22.3 2.7 23 16-38 19-41 (46)
63 1vej_A Riken cDNA 4931431F19; 20.6 85 0.0029 24.7 3.6 25 15-39 42-66 (74)
No 1
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=100.00 E-value=4.9e-53 Score=435.90 Aligned_cols=242 Identities=37% Similarity=0.670 Sum_probs=224.5
Q ss_pred CCCCCHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHcCCCCcccccChH------HHHHHHhccCccccccCCCCCcEEE
Q 009551 12 NPCFNVATSLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFK------EINEVLSYYPHGYHGVDKEGRPVYI 85 (532)
Q Consensus 12 ~~~~DD~~LLRFLrArkfDvekA~~~l~~~l~WRk~~~~d~i~~d~~~~------el~~vlk~~p~~~~G~Dk~GRPV~i 85 (532)
..+.||.+||||||||+||+++|.+||+++++||+++++|+++.++.++ +...+.++++++++|+|++||||+|
T Consensus 56 ~~~~dD~~LLRFLRArkfdv~kA~~mL~~~l~WRk~~~vd~i~~~~~~~~~~~~~e~~~~~~~~~~~~~g~Dk~GRpV~i 135 (320)
T 3q8g_A 56 KERLDDSTLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKEAEDKERIKLAKMYPQYYHHVDKDGRPLYF 135 (320)
T ss_dssp CSSCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHHHHTHHHHHHHHHHHHTTSCEEEEEECTTCCEEEE
T ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCccccccccccccccchhHHHHHHHhCCceecCCCCCcCEEEE
Confidence 4568999999999999999999999999999999999999998776544 4456778999999999999999999
Q ss_pred EecCccCcchhhhccCHHHHHHHHHHHHHHHHHhhcchhhhhhcCCCCceEEEEeCCCCCcCCCChHHHHHHHHHHHHhc
Q 009551 86 ERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSKNARELILRLQKIDG 165 (532)
Q Consensus 86 ~rlg~~d~~~l~~~~t~~~~lr~~v~~lE~~l~~~~pa~~~~~~~~i~~~t~IiDl~G~sl~~~~~~~~~lik~l~~ilq 165 (532)
+++|++|++++++.++.+++++++++.+|.+++.+++.|+...+..++++++|+|++|+++++++.. .++++.+++++|
T Consensus 136 ~r~g~~d~~~l~~~~~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve~~~~IiD~~g~sl~~~~~~-~~~~k~~~~~lq 214 (320)
T 3q8g_A 136 AELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGISLSNAYHV-LSYIKDVADISQ 214 (320)
T ss_dssp EECTTCCHHHHHHHCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCHHHHHHT-HHHHHHHHHHHH
T ss_pred EeccccCHHHhhccCCHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcceeEEEEECCCCCHHHHHHH-HHHHHHHHHHHH
Confidence 9999999999888889999999999999999988888888777778999999999999999998753 788999999999
Q ss_pred cccccccceeEEEcCCchhHHHHHHHHhcCChhhhcceEEeCccchHHHHccCCCCCCCccCCCCCCCCC-CCCCccCCC
Q 009551 166 DNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEFLGGTCNCAD-QGGCLRSDK 244 (532)
Q Consensus 166 d~YPErL~~i~IINaP~~f~~lw~lVKpFLd~kTr~KI~vlg~~~~~~Lle~Id~e~LP~eyGGt~~~~~-~ggc~~~~~ 244 (532)
+||||||+++||||+|++|+++|+++||||+++|++||+|+++++.+.|.++||+++||++|||+++|.+ +|||+.++.
T Consensus 215 ~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~i~~~~LP~~yGG~~~~~~~~ggc~~~~~ 294 (320)
T 3q8g_A 215 NYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELLKQIPIENLPVKYGGTSVLHNPNDKFYYSDI 294 (320)
T ss_dssp HHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECCTTHHHHHHHHSCGGGSBGGGTSCBCCSSTTSCGGGBCB
T ss_pred hhCchhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeCCCcHHHHHhhCChhhCChhhCCCCCCCCCCCCeecCCC
Confidence 9999999999999999999999999999999999999999998888999999999999999999999976 699999999
Q ss_pred CCCCCHHHHH
Q 009551 245 GPWQNPEILK 254 (532)
Q Consensus 245 gpW~dp~~~k 254 (532)
|||+||++++
T Consensus 295 gpw~~~~~~~ 304 (320)
T 3q8g_A 295 GPWRDPRYIG 304 (320)
T ss_dssp SGGGCTTTCC
T ss_pred CCCCChhhcC
Confidence 9999997766
No 2
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=100.00 E-value=2.6e-52 Score=424.64 Aligned_cols=242 Identities=38% Similarity=0.710 Sum_probs=224.9
Q ss_pred CCCCCHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHcCCCCcccccChHHHHHHHhccCccccccCCCCCcEEEEecCcc
Q 009551 12 NPCFNVATSLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGYHGVDKEGRPVYIERLGKV 91 (532)
Q Consensus 12 ~~~~DD~~LLRFLrArkfDvekA~~~l~~~l~WRk~~~~d~i~~d~~~~el~~vlk~~p~~~~G~Dk~GRPV~i~rlg~~ 91 (532)
+.+.||.+|+||||||+||+++|.+||+++++||+++++++++.++++.+...+.++++++++|+|++||||+|+++|++
T Consensus 47 ~~~~dd~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~Dk~GrpV~i~~~g~~ 126 (296)
T 1aua_A 47 IERLDDSTLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYDEKPLIAKFYPQYYHKTDKDGRPVYFEELGAV 126 (296)
T ss_dssp CSSCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHCCCTTHHHHGGGSCCEEEEECTTSCEEEEECGGGC
T ss_pred CCCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcchhhhccccCcHHHHHHhCCceecccCCCCCEEEEEeeccC
Confidence 45689999999999999999999999999999999999999987766555556778899999999999999999999999
Q ss_pred CcchhhhccCHHHHHHHHHHHHHHHHHhhcchhhhhhcCCCCceEEEEeCCCCCcCCCChHHHHHHHHHHHHhccccccc
Q 009551 92 DSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSKNARELILRLQKIDGDNYPET 171 (532)
Q Consensus 92 d~~~l~~~~t~~~~lr~~v~~lE~~l~~~~pa~~~~~~~~i~~~t~IiDl~G~sl~~~~~~~~~lik~l~~ilqd~YPEr 171 (532)
|++++++..+.+++++++++.+|.+++.++++|+...+.+++++++|+|++|+++++++.. +++++.+++++|+|||||
T Consensus 127 d~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D~~g~s~~~~~~~-~~~~k~~~~~~q~~YPer 205 (296)
T 1aua_A 127 NLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISISSAYSV-MSYVREASYISQNYYPER 205 (296)
T ss_dssp CHHHHTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCHHHHHHH-HHHHHHHHHHHHHHSTTC
T ss_pred ChHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEECCCCCHHHHHHH-HHHHHHHHHHHHHhHHHh
Confidence 9999888889999999999999999998888888777778999999999999999988753 789999999999999999
Q ss_pred cceeEEEcCCchhHHHHHHHHhcCChhhhcceEEeCccchHHHHccCCCCCCCccCCCCCCCCC-CCCCccCCCCCCCCH
Q 009551 172 LHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEFLGGTCNCAD-QGGCLRSDKGPWQNP 250 (532)
Q Consensus 172 L~~i~IINaP~~f~~lw~lVKpFLd~kTr~KI~vlg~~~~~~Lle~Id~e~LP~eyGGt~~~~~-~ggc~~~~~gpW~dp 250 (532)
|+++||||+|++|+++|+++||||+++|++||+|+++++.+.|.++||+++||++|||+++|.+ +|||+.++.|||+||
T Consensus 206 l~~i~iiN~P~~f~~~~~iikpfl~~~t~~KI~~~~~~~~~~L~~~i~~~~LP~~yGG~~~~~~~~~g~~~~~~~~w~~~ 285 (296)
T 1aua_A 206 MGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENLPVKFGGKSEVDESKGGLYLSDIGPWRDP 285 (296)
T ss_dssp EEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECCSCCHHHHTTTSCSSSSBGGGTSCBCCCGGGCCSTTCCCSGGGCG
T ss_pred hCeEEEECchHHHHHHHHHHHhhcCHhhcceEEEeCcccHHHHHhhCCHhhCcHHhCCCCCCCCCCCCceeCCCCCCCCh
Confidence 9999999999999999999999999999999999998888999999999999999999999986 689999999999999
Q ss_pred HHHH
Q 009551 251 EILK 254 (532)
Q Consensus 251 ~~~k 254 (532)
++++
T Consensus 286 ~~~~ 289 (296)
T 1aua_A 286 KYIG 289 (296)
T ss_dssp GGCC
T ss_pred hhcc
Confidence 8865
No 3
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=100.00 E-value=9e-45 Score=384.50 Aligned_cols=228 Identities=29% Similarity=0.447 Sum_probs=202.2
Q ss_pred hhhhhhccC--CCCCHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHcCCCCcccccChHHHHHHHhccCccccccCCCCC
Q 009551 4 MQAVIFFFN--PCFNVATSLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGYHGVDKEGR 81 (532)
Q Consensus 4 ~qA~~~~l~--~~~DD~~LLRFLrArkfDvekA~~~l~~~l~WRk~~~~d~i~~d~~~~el~~vlk~~p~~~~G~Dk~GR 81 (532)
++.+....+ ++.||.+||||||||+||+++|.+||+++++||++++++++++. ..++ .+.++++.+++|+|++||
T Consensus 20 r~~l~~~~~~l~~~dD~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~-~~~~--~~~~~~~~~~~g~Dk~Gr 96 (403)
T 1olm_A 20 RENVQDVLPALPNPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISW-QPPE--VIQQYLSGGMCGYDLDGC 96 (403)
T ss_dssp HHHHGGGGGGSSCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGGGS-CCCH--HHHHHCCBEEEEECTTSC
T ss_pred HHHHHhhccCCCCCChhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCccccc-CCHH--HHHHhCCceeeccCCCcC
Confidence 344444432 36899999999999999999999999999999999999988763 3333 355677888999999999
Q ss_pred cEEEEecCccCcchhhhccCHHHHHHHHHHHHHHHHHhhcchhhhhhcCCCCceEEEEeCCCCCcCCCChHHHHHHHHHH
Q 009551 82 PVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSKNARELILRLQ 161 (532)
Q Consensus 82 PV~i~rlg~~d~~~l~~~~t~~~~lr~~v~~lE~~l~~~~pa~~~~~~~~i~~~t~IiDl~G~sl~~~~~~~~~lik~l~ 161 (532)
||+|+++|++|++++++..+.+++++++++.+|.+++.+. .++...+++++++++|+|++|++++++++..+++++.++
T Consensus 97 pV~~~~~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~~~-~~s~~~g~~v~~~~~I~D~~g~sl~~~~~~~~~~~k~~~ 175 (403)
T 1olm_A 97 PVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECA-HQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFL 175 (403)
T ss_dssp EEEEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHH-HHHHHHTSCCCCEEEEEECTTCCGGGGCHHHHHHHHHHH
T ss_pred EEEEEecCCCChHHhhccCCHHHHHHHHHHHHHHHHHHHH-hhHHhhCCcccceEEEEECCCCCHHHHhhHHHHHHHHHH
Confidence 9999999999999988888999999999999999988543 333344557899999999999999999887889999999
Q ss_pred HHhccccccccceeEEEcCCchhHHHHHHHHhcCChhhhcceEEeCccchHHHHccCCCCCCCccCCCCCCCCC
Q 009551 162 KIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEFLGGTCNCAD 235 (532)
Q Consensus 162 ~ilqd~YPErL~~i~IINaP~~f~~lw~lVKpFLd~kTr~KI~vlg~~~~~~Lle~Id~e~LP~eyGGt~~~~~ 235 (532)
+++|+||||||+++||||+|++|.++|+++||||+++|++||+|+++++.+.|.++||+++||.+|||++++++
T Consensus 176 ~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~I~~~~LP~~yGG~~~~~~ 249 (403)
T 1olm_A 176 CMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQVPVEYGGTMTDPD 249 (403)
T ss_dssp HHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCTTHHHHHTTTSCGGGSBGGGTSSBCCTT
T ss_pred HHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceEEEEChhHHHHHHhhcChhhCchhhCCCcCCCC
Confidence 99999999999999999999999999999999999999999999998888899999999999999999998864
No 4
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=100.00 E-value=2.1e-42 Score=344.43 Aligned_cols=207 Identities=24% Similarity=0.352 Sum_probs=180.3
Q ss_pred CCCCCHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHcCCCCcccccChHHHHHHHhc-cCccccccCCCCCcEEEEecCc
Q 009551 12 NPCFNVATSLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSY-YPHGYHGVDKEGRPVYIERLGK 90 (532)
Q Consensus 12 ~~~~DD~~LLRFLrArkfDvekA~~~l~~~l~WRk~~~~d~i~~d~~~~el~~vlk~-~p~~~~G~Dk~GRPV~i~rlg~ 90 (532)
+...||.+|+||||||+||+++|.+||+++++||++++ ++..+..++++....+. +..+++|+|++||||+|+++|+
T Consensus 28 ~~~~dd~~LlRFLra~k~dv~~A~~~l~~~l~wR~~~~--~i~~~~~~~~~~~~~~~g~~~~l~g~D~~GrpV~i~~~~~ 105 (262)
T 1r5l_A 28 PLPLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAECP--EISADLHPRSIIGLLKAGYHGVLRSRDPTGSKVLIYRIAH 105 (262)
T ss_dssp SSCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCH--HHHSCCCGGGTHHHHHTTCEEECSSCCTTCCEEEEEEGGG
T ss_pred CCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCh--HhhhcCChHHHHHHHHcCCccCCCCcCCCCCEEEEEeccc
Confidence 45689999999999999999999999999999999996 34444444555444444 4567889999999999999999
Q ss_pred cCcchhhhccCHHHHHHHHHHHHHHHHHhhcchhhhhhcCCCCceEEEEeCCCCCcCCCChHHHHHHHHHHHHhcccccc
Q 009551 91 VDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSKNARELILRLQKIDGDNYPE 170 (532)
Q Consensus 91 ~d~~~l~~~~t~~~~lr~~v~~lE~~l~~~~pa~~~~~~~~i~~~t~IiDl~G~sl~~~~~~~~~lik~l~~ilqd~YPE 170 (532)
+|++++ +.+++++++++.+|.++... ..++.|+++|+|++|++++++++...+.++.+++++|+||||
T Consensus 106 ~d~~~~----~~~~~~r~~~~~~E~~~~~~--------~~~~~g~~~I~D~~g~s~~~~~~~~~~~~k~~~~~~q~~yPe 173 (262)
T 1r5l_A 106 WDPKVF----TAYDVFRVSLITSELIVQEV--------ETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPL 173 (262)
T ss_dssp CCTTTS----CHHHHHHHHHHHHHHHTTSH--------HHHHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTSSSS
T ss_pred cCcccC----CHHHHHHHHHHHHHHHHhCh--------hhcccceEEEEECCCCCHHHHhccCHHHHHHHHHHHHhhCCh
Confidence 999873 68899999999999876521 224678999999999999988655578899999999999999
Q ss_pred ccceeEEEcCCchhHHHHHHHHhcCChhhhcceEEeCccchHHHHccCCCCCCCccCCCCCCC
Q 009551 171 TLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEFLGGTCNC 233 (532)
Q Consensus 171 rL~~i~IINaP~~f~~lw~lVKpFLd~kTr~KI~vlg~~~~~~Lle~Id~e~LP~eyGGt~~~ 233 (532)
|++++||||+|++|+++|+++||||+++|++||+|+++++.+.|.++|| ++||++|||++..
T Consensus 174 rl~~i~ivN~P~~f~~~~~~vkpfl~~~t~~Ki~~~~~~~~~~L~~~i~-~~LP~~yGG~~~~ 235 (262)
T 1r5l_A 174 KVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHFP-DILPLEYGGEEFS 235 (262)
T ss_dssp CEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECCSSCHHHHHHHST-TTSCGGGTCSSCC
T ss_pred hhceEEEEeCCHHHHHHHHHHHHhcCHHHHhheEEeCCCcHHHHHHHhh-hhCcHhhCCCCCC
Confidence 9999999999999999999999999999999999999888899999999 9999999999754
No 5
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=100.00 E-value=3.5e-42 Score=354.24 Aligned_cols=208 Identities=22% Similarity=0.338 Sum_probs=183.9
Q ss_pred CCCCHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHcCCCCcccccChHHHHHHHhc-cCccccccCCCCCcEEEEecCcc
Q 009551 13 PCFNVATSLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSY-YPHGYHGVDKEGRPVYIERLGKV 91 (532)
Q Consensus 13 ~~~DD~~LLRFLrArkfDvekA~~~l~~~l~WRk~~~~d~i~~d~~~~el~~vlk~-~p~~~~G~Dk~GRPV~i~rlg~~ 91 (532)
.++||.+|+||||||+||+++|.+||.++++||++++ .++++..++++..+++. ++.+++|+|++||||+|+++|++
T Consensus 88 ~~~dD~~LlRFLRarkfdv~kA~~~L~~~l~wR~~~~--~~~~~~~~~~i~~~l~~g~~~~l~g~Dk~GrpVii~r~g~~ 165 (316)
T 3hx3_A 88 QEKDSGFFLRFIRARKFNVGRAYELLRGYVNFRLQYP--ELFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENW 165 (316)
T ss_dssp TTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCG--GGTTTCCHHHHHHHHHTTSSEECSSCCTTSCEEEEEECTTC
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCc--hhhcCCCHHHHHHHHHcCCccccCCCCCCCCEEEEEecccC
Confidence 5689999999999999999999999999999999997 34555566666665554 55778999999999999999999
Q ss_pred CcchhhhccCHHHHHHHHHHHHHHHHHhhcchhhhhhcCCCCceEEEEeCCCCCcCCCChHHHHHHHHHHHHhccccccc
Q 009551 92 DSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSKNARELILRLQKIDGDNYPET 171 (532)
Q Consensus 92 d~~~l~~~~t~~~~lr~~v~~lE~~l~~~~pa~~~~~~~~i~~~t~IiDl~G~sl~~~~~~~~~lik~l~~ilqd~YPEr 171 (532)
|++++ +.+++++++++.+|.++.. ...+++|+++|+|++|++++|+.....+.++.+++++|+|||+|
T Consensus 166 d~~~~----~~~~~~r~~~~~lE~~l~~--------~~~~v~g~v~IiD~~g~sl~~~~~~~~~~~k~~~~~lq~~YPer 233 (316)
T 3hx3_A 166 QSQEI----TFDEILQAYCFILEKLLEN--------EETQINGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPAW 233 (316)
T ss_dssp CTTTS----CHHHHHHHHHHHHHHHTTS--------HHHHHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTTSTTT
T ss_pred CCCCC----CHHHHHHHHHHHHHHHHhc--------ccCCcceEEEEEECCCCCHHHhccCChHHHHHHHHHHHHhhhhh
Confidence 99873 7899999999999988752 23467899999999999999875444678999999999999999
Q ss_pred cceeEEEcCCchhHHHHHHHHhcCChhhhcceEEeCccchHHHHccCCCCCCCccCCCCCCCCC
Q 009551 172 LHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEFLGGTCNCAD 235 (532)
Q Consensus 172 L~~i~IINaP~~f~~lw~lVKpFLd~kTr~KI~vlg~~~~~~Lle~Id~e~LP~eyGGt~~~~~ 235 (532)
++++||||+|++|.++|+++||||+++|++||+|+|+++ +.|.++||+++||.+|||++++.+
T Consensus 234 L~~i~iiN~P~~f~~i~~ivkpfl~~kt~~KI~~~~~~~-~~L~~~I~~~~LP~eyGG~~~~~d 296 (316)
T 3hx3_A 234 FKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGDDL-SGFYQEIDENILPSDFGGTLPKYD 296 (316)
T ss_dssp EEEEEEESCCTTHHHHHHHHGGGCCHHHHTTEEEEETCC-HHHHHHSCGGGSBGGGTSSBCCCC
T ss_pred hceEEEEeCCHHHHHHHHHHHHhCCHHhhhheEEeCCCH-HHHHhhCCHhhCcHhhCCCCCCcC
Confidence 999999999999999999999999999999999998765 689999999999999999998643
No 6
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=99.06 E-value=1.6e-10 Score=115.22 Aligned_cols=136 Identities=14% Similarity=0.152 Sum_probs=110.4
Q ss_pred HhccCccccccCCCCCcEEEEecCccCcchhhhccCHHHHHHHHHHHHHHHHHhhcchhhhhhcCCCCceEEEEeCCCCC
Q 009551 66 LSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVG 145 (532)
Q Consensus 66 lk~~p~~~~G~Dk~GRPV~i~rlg~~d~~~l~~~~t~~~~lr~~v~~lE~~l~~~~pa~~~~~~~~i~~~t~IiDl~G~s 145 (532)
.+....+..|.|++||||+++...+++... .+++.++.|.+..+++... ...++|+|+.|++
T Consensus 8 ~~~~ify~~G~d~dGrpViv~~~~~l~~~~----~D~e~Ll~~vl~tl~~~~~--------------~~y~lV~d~T~~~ 69 (256)
T 3pg7_A 8 KTLSIFYQAGTSKAGNPIFYYVARRFKTGQ----INGDLLIYHVLLTLKPYYA--------------KPYEIVVDLTHTG 69 (256)
T ss_dssp HHHTSEEEEEECTTSCEEEEEEGGGCCBTT----BCHHHHHHHHHHHHTTTTT--------------SCEEEEEECTTCC
T ss_pred HHcCCEEEcCcCCCCCEEEEEEeecCCCCC----CCHHHHHHHHHHHHHHhcC--------------CCeEEEEECCCCC
Confidence 344444455899999999999999998765 4688888877776664332 4588999999999
Q ss_pred cCCCChHHHHHHHHHHHHhccccccccceeEEEcCCchhHHHHHH-HHhcCChhhhcceEEeCccchHHHHccCCCCCC
Q 009551 146 LKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNT-VKSFLDPKTTSKIHVLGNKYQSKLLEIIDAREL 223 (532)
Q Consensus 146 l~~~~~~~~~lik~l~~ilqd~YPErL~~i~IINaP~~f~~lw~l-VKpFLd~kTr~KI~vlg~~~~~~Lle~Id~e~L 223 (532)
..+.+. .+.++.+.+++...|...++++||+|++++|+..|+. .++|.+.+..+|++++++ .++|.++|+.++|
T Consensus 70 ~~n~p~--~~wl~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~s--l~eL~~~i~~~~L 144 (256)
T 3pg7_A 70 PSNRFK--TDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDC--PGKLAEHIEHEQQ 144 (256)
T ss_dssp GGGCCC--HHHHHHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEESS--TTGGGGTSCGGGC
T ss_pred cccCCc--HHHHHHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEECC--HHHHHhhcCHHHc
Confidence 876554 6789999999999999999999999999999976665 466777788899999965 4889999987776
No 7
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=98.78 E-value=2.4e-09 Score=108.44 Aligned_cols=132 Identities=14% Similarity=0.152 Sum_probs=97.9
Q ss_pred CccccccCCCCCcEEEEecCccCcchhhhccCHHHHHHHHHHHHHHHHHhhcchhhhhhcCCCCceEEEEeCCCCCcCCC
Q 009551 70 PHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNF 149 (532)
Q Consensus 70 p~~~~G~Dk~GRPV~i~rlg~~d~~~l~~~~t~~~~lr~~v~~lE~~l~~~~pa~~~~~~~~i~~~t~IiDl~G~sl~~~ 149 (532)
..+..|.|++||||+++..++++... .+.+.++-|.+..+++.. ....++|+|+.|++..+-
T Consensus 31 ~f~~~g~d~dG~PViv~~~~~~~~~~----~D~e~Lly~il~tl~~~~--------------~~~y~lV~D~T~~~~~n~ 92 (290)
T 3peg_A 31 IFYQAGTSKAGNPIFYYVARRFKTGQ----INGDLLIYHVLLTLKPYY--------------AKPYEIVVDLTHTGPSNR 92 (290)
T ss_dssp TEEEEEECTTSCEEEEEEGGGCCBTT----BCHHHHHHHHHHHHTTTT--------------TSCEEEEEECTTCCGGGC
T ss_pred eEEEeccCCCCCEEEEEEeecCCccC----CCHHHHHHHHHHHHHHhc--------------CCCeEEEEEcCCCCccCC
Confidence 33344799999999999999998765 367777777766655433 246889999999998765
Q ss_pred ChHHHHHHHHHHHHhccccccccceeEEEcCCchhHHHH-HHHHhcCChhhhcceEEeCccchHHHHccCCCCCC
Q 009551 150 SKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLW-NTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDAREL 223 (532)
Q Consensus 150 ~~~~~~lik~l~~ilqd~YPErL~~i~IINaP~~f~~lw-~lVKpFLd~kTr~KI~vlg~~~~~~Lle~Id~e~L 223 (532)
+. .++++.+.+++...|+..++++||+|++++|+..+ ...++|...+..+|+.++++. ..|..+++.+++
T Consensus 93 p~--~~~l~~~~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~~~~--~~L~~~i~~~~~ 163 (290)
T 3peg_A 93 FK--TDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDCP--GKLAEHIEHEQQ 163 (290)
T ss_dssp CC--HHHHGGGGTSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEESSS--CC----------
T ss_pred Ch--HHHHHHHHHHCCHHHHhhccEEEEECCCHHHHHHHHHHHhhhhhhhcCceEEEcCCH--HHHHhhCCHHHh
Confidence 43 68999999999999999999999999999998754 566788888889999988653 448888887754
No 8
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=76.11 E-value=2.9 Score=28.06 Aligned_cols=15 Identities=20% Similarity=0.614 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHhcC
Q 009551 455 KRLSELEEKVDTLQA 469 (532)
Q Consensus 455 ~r~~~le~~~~~l~~ 469 (532)
+||..||+||.+|-.
T Consensus 1 eRMnQLEdKvEeLl~ 15 (34)
T 2bni_A 1 XRMKQIEDKLEEILS 15 (34)
T ss_dssp --CHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHH
Confidence 589999999988754
No 9
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=74.37 E-value=3.8 Score=27.30 Aligned_cols=14 Identities=21% Similarity=0.579 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHhcC
Q 009551 456 RLSELEEKVDTLQA 469 (532)
Q Consensus 456 r~~~le~~~~~l~~ 469 (532)
||..||+||.+|-.
T Consensus 1 RMnQLEdKvEeLl~ 14 (33)
T 3c3g_A 1 RMKXIEXKLXEIXS 14 (33)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHH
Confidence 68889999988754
No 10
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=73.90 E-value=4.9 Score=26.78 Aligned_cols=14 Identities=29% Similarity=0.634 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHhcC
Q 009551 456 RLSELEEKVDTLQA 469 (532)
Q Consensus 456 r~~~le~~~~~l~~ 469 (532)
||..||+||.+|-.
T Consensus 1 RMnQLEdKVEell~ 14 (33)
T 2wq1_A 1 RMKQLEDKIEENTS 14 (33)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHH
Confidence 68889999987743
No 11
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=73.38 E-value=5.1 Score=26.83 Aligned_cols=15 Identities=20% Similarity=0.499 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHhcC
Q 009551 455 KRLSELEEKVDTLQA 469 (532)
Q Consensus 455 ~r~~~le~~~~~l~~ 469 (532)
+||..||+||.+|-.
T Consensus 1 eRMnQLEdKVEeLl~ 15 (34)
T 3c3f_A 1 XRMXQIEXKLEXILS 15 (34)
T ss_dssp -CHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHh
Confidence 588999999987743
No 12
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=72.86 E-value=4.3 Score=27.22 Aligned_cols=15 Identities=40% Similarity=0.578 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhcC
Q 009551 455 KRLSELEEKVDTLQA 469 (532)
Q Consensus 455 ~r~~~le~~~~~l~~ 469 (532)
+||..||+||.+|-.
T Consensus 1 eRMnQLE~kVEeLl~ 15 (34)
T 2oxj_A 1 XRMXQLEXKVXELLX 15 (34)
T ss_dssp -CHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH
Confidence 588999999988753
No 13
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=72.29 E-value=4 Score=27.42 Aligned_cols=15 Identities=20% Similarity=0.501 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHhcC
Q 009551 455 KRLSELEEKVDTLQA 469 (532)
Q Consensus 455 ~r~~~le~~~~~l~~ 469 (532)
.||..||+||.+|-.
T Consensus 1 ~RM~QLEdKVEeLl~ 15 (34)
T 1uo4_A 1 XRMKQIEDKGEEILS 15 (34)
T ss_dssp --CHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHH
Confidence 388899999987743
No 14
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=71.25 E-value=1.1 Score=30.08 Aligned_cols=15 Identities=20% Similarity=0.492 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHhcC
Q 009551 455 KRLSELEEKVDTLQA 469 (532)
Q Consensus 455 ~r~~~le~~~~~l~~ 469 (532)
+||..||+||.+|-.
T Consensus 1 ~RMnQLEdkVEeLl~ 15 (34)
T 2hy6_A 1 MKVKQLADAVEELAS 15 (34)
T ss_dssp --CHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHH
Confidence 488889999987754
No 15
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=68.78 E-value=4.9 Score=26.85 Aligned_cols=13 Identities=46% Similarity=0.756 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHhc
Q 009551 456 RLSELEEKVDTLQ 468 (532)
Q Consensus 456 r~~~le~~~~~l~ 468 (532)
||..||+||++|-
T Consensus 1 RM~QLE~kVEeLl 13 (33)
T 3m48_A 1 RMAQLEAKVEELL 13 (33)
T ss_dssp --CHHHHHHHHHH
T ss_pred CccHHHHHHHHHH
Confidence 7888899988774
No 16
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=66.33 E-value=7.7 Score=26.34 Aligned_cols=14 Identities=21% Similarity=0.539 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHhc
Q 009551 455 KRLSELEEKVDTLQ 468 (532)
Q Consensus 455 ~r~~~le~~~~~l~ 468 (532)
+||..||+||.+|-
T Consensus 1 eRMnQLE~kVEeLl 14 (36)
T 1kd8_A 1 XEVKQLEAEVEEIE 14 (36)
T ss_dssp -CCHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHH
Confidence 47778888887663
No 17
>3a8y_C BAG family molecular chaperone regulator 5; BAG domain, HSP70, ATPase domain, protein complex, triple helix, structural genomics, NPPSFA; 2.30A {Homo sapiens}
Probab=65.74 E-value=18 Score=32.19 Aligned_cols=66 Identities=26% Similarity=0.410 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCChhHH-----HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHH
Q 009551 449 LLSSVTKRLSELEEKVDTLQAKPSEMPYEKE-----ELLHAAVCRVDALEAE----LIATKKALHEALMRQEDLLAYIDR 519 (532)
Q Consensus 449 ~~~~~~~r~~~le~~~~~l~~kP~~~p~eke-----~~l~~~~~Rv~~~e~~----l~~tkkaL~~al~kQ~El~ayie~ 519 (532)
.+..+..++++|+.+|+.+..| +.||| |||..-+=+.|++|.+ +-..+|+ ++-+=.-++++||.
T Consensus 35 aI~~V~~eVd~L~~eV~~F~G~----~~dkey~~L~E~L~k~LLKLD~IdteGd~~vR~aRK~---aVk~VQ~~Le~LD~ 107 (142)
T 3a8y_C 35 AVWNVLGNLSEIQGEVLSFDGN----RTDKNYIRLEELLTKQLLALDAVDPQGEEKCKAARKQ---AVRLAQNILSYLDL 107 (142)
T ss_dssp HHHHHHHHHHHHHHHHHTCCSC----TTSHHHHHHHHHHHHHHHHHHTCCCTTCHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCC----chHHHHHHHHHHHHHHHHHHcCcCCCCCHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 4678899999999999999777 56774 7899999999999877 4455554 45555667888887
Q ss_pred HH
Q 009551 520 QE 521 (532)
Q Consensus 520 ~k 521 (532)
++
T Consensus 108 k~ 109 (142)
T 3a8y_C 108 KS 109 (142)
T ss_dssp HH
T ss_pred hh
Confidence 65
No 18
>1m62_A BAG-family molecular chaperone regulator-4; BAG domain, SODD, silencer of death domains, HSP70/HSC70 CO-chaperone; NMR {Homo sapiens} SCOP: a.7.7.1
Probab=65.26 E-value=20 Score=29.32 Aligned_cols=65 Identities=18% Similarity=0.372 Sum_probs=47.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCCCChhHH-----HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHH
Q 009551 448 DLLSSVTKRLSELEEKVDTLQAKPSEMPYEKE-----ELLHAAVCRVDALEAE----LIATKKALHEALMRQEDLLAYID 518 (532)
Q Consensus 448 ~~~~~~~~r~~~le~~~~~l~~kP~~~p~eke-----~~l~~~~~Rv~~~e~~----l~~tkkaL~~al~kQ~El~ayie 518 (532)
.-+..+...+.+|+..|+....| +.||| |||..-+=++|++|.| +-..+|+. +-+=.-++++||
T Consensus 11 ~~I~~I~~ev~~L~~~V~~f~g~----~~dkey~~L~E~L~k~LLkLD~Ie~eG~~~~R~~RK~~---Vk~iQ~~l~~LD 83 (87)
T 1m62_A 11 KKIIHVLEKVQYLEQEVEEFVGK----KTDKAYWLLEEMLTKELLELDSVETGGQDSVRQARKEA---VCKIQAILEKLE 83 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCC----TTSHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC----cchHHHHHHHHHHHHHHHHHCCcCcCCcHHHHHHHHHH---HHHHHHHHHHHH
Confidence 34678889999999999999987 46664 7888889999999887 55555543 333344556665
Q ss_pred H
Q 009551 519 R 519 (532)
Q Consensus 519 ~ 519 (532)
.
T Consensus 84 ~ 84 (87)
T 1m62_A 84 K 84 (87)
T ss_dssp H
T ss_pred h
Confidence 5
No 19
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=63.09 E-value=35 Score=27.69 Aligned_cols=66 Identities=20% Similarity=0.164 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCC----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 009551 455 KRLSELEEKVDTLQAKPSEMP----YEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQ 520 (532)
Q Consensus 455 ~r~~~le~~~~~l~~kP~~~p----~eke~~l~~~~~Rv~~~e~~l~~tkkaL~~al~kQ~El~ayie~~ 520 (532)
+|-.+|=+.+..|..-=|.+| ..|-.+|..|++=|+.|+.+...-..-...--.+|.+|..-|+..
T Consensus 16 ~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 16 QRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 577777888888776655454 579999999999999999887665555554445666666655543
No 20
>1m7k_A Silencer of death domains; three helix bundle, chaperone; NMR {Homo sapiens} SCOP: a.7.7.1
Probab=62.99 E-value=15 Score=30.89 Aligned_cols=66 Identities=18% Similarity=0.382 Sum_probs=47.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCCChhHH-----HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHH
Q 009551 447 VDLLSSVTKRLSELEEKVDTLQAKPSEMPYEKE-----ELLHAAVCRVDALEAE----LIATKKALHEALMRQEDLLAYI 517 (532)
Q Consensus 447 ~~~~~~~~~r~~~le~~~~~l~~kP~~~p~eke-----~~l~~~~~Rv~~~e~~----l~~tkkaL~~al~kQ~El~ayi 517 (532)
-.-+..+...+.+|+..|+.+..++ .||| |||..-+=++|++|.| +-..+|++ +-+=.-++++|
T Consensus 23 ~~kI~~I~~ev~~L~~~V~~f~G~k----~dkey~~L~E~L~k~LLkLD~IeteG~~~vR~~RK~~---Vk~iQ~~l~~L 95 (99)
T 1m7k_A 23 IKKIIHVLEKVQYLEQEVEEFVGKK----TDKAYWLLEEMLTKELLELDSVETGGQDSVRQARKEA---VCKIQAILEKL 95 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSCT----TSHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCc----hHHHHHHHHHHHHHHHHHHCCcCcCCcHHHHHHHHHH---HHHHHHHHHHH
Confidence 3457888999999999999999874 5664 7888888899999876 55555543 33334455555
Q ss_pred HH
Q 009551 518 DR 519 (532)
Q Consensus 518 e~ 519 (532)
|.
T Consensus 96 D~ 97 (99)
T 1m7k_A 96 EK 97 (99)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 21
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=60.72 E-value=16 Score=24.77 Aligned_cols=15 Identities=27% Similarity=0.592 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHhcC
Q 009551 455 KRLSELEEKVDTLQA 469 (532)
Q Consensus 455 ~r~~~le~~~~~l~~ 469 (532)
+||..||+||.+|-.
T Consensus 1 eRMnQLE~KVEeLl~ 15 (36)
T 1kd8_B 1 XKVKQLKAKVEELKS 15 (36)
T ss_dssp -CHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHH
Confidence 588889999987754
No 22
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=59.03 E-value=46 Score=26.40 Aligned_cols=63 Identities=10% Similarity=0.181 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 009551 455 KRLSELEEKVDTLQAKPSEMP---YEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYI 517 (532)
Q Consensus 455 ~r~~~le~~~~~l~~kP~~~p---~eke~~l~~~~~Rv~~~e~~l~~tkkaL~~al~kQ~El~ayi 517 (532)
+|...|=+.+..|.+=-|..| ..|-.+|..|++=|+.|+.+...-+.-+.+--.++.+|-+-|
T Consensus 12 ~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 12 KRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777788888776533322 489999999999999999887766554444444444443333
No 23
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=55.72 E-value=18 Score=24.31 Aligned_cols=16 Identities=19% Similarity=0.524 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHhcCC
Q 009551 455 KRLSELEEKVDTLQAK 470 (532)
Q Consensus 455 ~r~~~le~~~~~l~~k 470 (532)
+||..||+||.+|.+|
T Consensus 1 ~RMnQledKvEel~~~ 16 (34)
T 2r2v_A 1 MKLKQVADKLEEVASK 16 (34)
T ss_dssp -CHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHH
Confidence 4788999999887643
No 24
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=50.18 E-value=74 Score=23.43 Aligned_cols=46 Identities=9% Similarity=0.167 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 009551 478 KEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEA 523 (532)
Q Consensus 478 ke~~l~~~~~Rv~~~e~~l~~tkkaL~~al~kQ~El~ayie~~k~~ 523 (532)
.++-+...=.+++.++.++..++..|..+...+..+.+.|.+++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556888899999999999999999999999999888754
No 25
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=49.48 E-value=1.1e+02 Score=27.34 Aligned_cols=66 Identities=23% Similarity=0.392 Sum_probs=49.2
Q ss_pred hhHHHHHHHH--------HHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 009551 448 DLLSSVTKRL--------SELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDR 519 (532)
Q Consensus 448 ~~~~~~~~r~--------~~le~~~~~l~~kP~~~p~eke~~l~~~~~Rv~~~e~~l~~tkkaL~~al~kQ~El~ayie~ 519 (532)
+.|..-+++| +.+|.-++.| |..=-.|.|+ ..||+.||.|+...-+-|.+++.+=++|++-|+.
T Consensus 53 ~~f~~~~~ela~dli~kakqIe~LIdsL---Pg~~~seeeQ-----~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~ 124 (151)
T 1yke_B 53 EEFSNTIDELSTDIILKTRQINKLIDSL---PGVDVSAEEQ-----LRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDS 124 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC---TTSSSCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCCCCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555 6777777776 3333344444 5899999999999999999999999999998876
Q ss_pred HH
Q 009551 520 QE 521 (532)
Q Consensus 520 ~k 521 (532)
.-
T Consensus 125 ~l 126 (151)
T 1yke_B 125 LI 126 (151)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 26
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=48.24 E-value=14 Score=27.88 Aligned_cols=28 Identities=18% Similarity=0.179 Sum_probs=24.4
Q ss_pred CCCCHHHHHHHhhhcCCCHHHHHHHHHH
Q 009551 13 PCFNVATSLRFLKARKFDIDKAKHMWAE 40 (532)
Q Consensus 13 ~~~DD~~LLRFLrArkfDvekA~~~l~~ 40 (532)
|..|...+-.-|+++++|++.|+.+|.+
T Consensus 21 P~ld~~~I~~vL~a~~gdvd~aI~~LL~ 48 (59)
T 1wgl_A 21 PNMDQEVIRSVLEAQRGNKDAAINSLLQ 48 (59)
T ss_dssp SSSCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 4567778999999999999999999865
No 27
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=47.96 E-value=1.3e+02 Score=27.34 Aligned_cols=70 Identities=9% Similarity=0.161 Sum_probs=50.8
Q ss_pred CCcchhhhHHHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 009551 442 PSLTEVDLLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQE 521 (532)
Q Consensus 442 ~~~~~~~~~~~~~~r~~~le~~~~~l~~kP~~~p~eke~~l~~~~~Rv~~~e~~l~~tkkaL~~al~kQ~El~ayie~~k 521 (532)
+.+.+.+.+...+++|++|+..+..+ |..+|+.+.||+.=.++. .+..+...---|..|.+|.+..+
T Consensus 10 ~~i~~~~~~~~alr~ia~l~r~~~~i-----------~~~~n~eI~~ik~~~~~~--~~~l~~~i~~l~~~l~~y~e~~r 76 (171)
T 2p2u_A 10 VIVADIRQAEGALAEIATIDRKVGEI-----------EAQMNEAIDAAKARASQK--SAPLLARRKELEDGVATFATLNK 76 (171)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhH
Confidence 34566667899999999999999876 456788888888654443 33444555566788889998886
Q ss_pred Hhh
Q 009551 522 EAK 524 (532)
Q Consensus 522 ~~k 524 (532)
..-
T Consensus 77 ~el 79 (171)
T 2p2u_A 77 TEM 79 (171)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 28
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=47.80 E-value=1.4e+02 Score=26.01 Aligned_cols=66 Identities=21% Similarity=0.389 Sum_probs=48.7
Q ss_pred hhHHHHHHHH--------HHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 009551 448 DLLSSVTKRL--------SELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDR 519 (532)
Q Consensus 448 ~~~~~~~~r~--------~~le~~~~~l~~kP~~~p~eke~~l~~~~~Rv~~~e~~l~~tkkaL~~al~kQ~El~ayie~ 519 (532)
+.|..-+++| +.+|.-++.| |..=-.|.|+ ..||+.||.|+...-+-|.+++.+=++|++-|+.
T Consensus 53 ~~f~~~~~ela~dli~k~kqIe~LIdsL---P~~~~see~Q-----~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~ 124 (132)
T 1ykh_B 53 EEFSNTIDELSTDIILKTRQINKLIDSL---PGVDVSAEEQ-----LRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDS 124 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS---TTTTCCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCCCCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555 6777777776 3332344443 5899999999999999999999999999988876
Q ss_pred HH
Q 009551 520 QE 521 (532)
Q Consensus 520 ~k 521 (532)
.-
T Consensus 125 ~l 126 (132)
T 1ykh_B 125 MI 126 (132)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 29
>1ugo_A BCL2-associated athanogene 5; triple helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics, chaperone; NMR {Mus musculus} SCOP: a.7.7.1
Probab=46.43 E-value=37 Score=28.46 Aligned_cols=66 Identities=20% Similarity=0.390 Sum_probs=47.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCCCChhH-----HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHH
Q 009551 448 DLLSSVTKRLSELEEKVDTLQAKPSEMPYEK-----EELLHAAVCRVDALEAE----LIATKKALHEALMRQEDLLAYID 518 (532)
Q Consensus 448 ~~~~~~~~r~~~le~~~~~l~~kP~~~p~ek-----e~~l~~~~~Rv~~~e~~----l~~tkkaL~~al~kQ~El~ayie 518 (532)
..+..+...+.+|+..|.....|+. || +|||..-+=++|++|.| +-..+|+ ++-+=.-++++||
T Consensus 18 ~kI~~I~~ev~~L~~~V~~f~g~k~----dkey~~L~E~L~k~LLkLD~IeteG~~~iR~~RK~---~Vk~iQ~~l~~LD 90 (99)
T 1ugo_A 18 SRLQEIQREVKAIEPQVVGFSGLSD----DKNYKRLERILTKQLFEIDSVDTEGKGDIQQARKR---AAQETERLLKELE 90 (99)
T ss_dssp HHHHHHHHHHHHSHHHHHTCCCCTT----SSHHHHHHHHHHHHHHHHHHSCCSSCHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCch----hHHHHHHHHHHHHHHHHHcCcCcCCcHHHHHHHHH---HHHHHHHHHHHHH
Confidence 3467888999999999999988873 55 48888888899999776 3334443 3333345666666
Q ss_pred HH
Q 009551 519 RQ 520 (532)
Q Consensus 519 ~~ 520 (532)
++
T Consensus 91 ~k 92 (99)
T 1ugo_A 91 QN 92 (99)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 30
>1uk5_A BAG-family molecular chaperone regulator-3; triple helix bandle, CAIR-1, BIS, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.7.7.1
Probab=45.87 E-value=48 Score=28.29 Aligned_cols=67 Identities=16% Similarity=0.392 Sum_probs=49.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCCCChhHH-----HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHH
Q 009551 448 DLLSSVTKRLSELEEKVDTLQAKPSEMPYEKE-----ELLHAAVCRVDALEAE----LIATKKALHEALMRQEDLLAYID 518 (532)
Q Consensus 448 ~~~~~~~~r~~~le~~~~~l~~kP~~~p~eke-----~~l~~~~~Rv~~~e~~----l~~tkkaL~~al~kQ~El~ayie 518 (532)
..+..+...+.+|+..|+....|+ .||| |||..-+=++|++|.| +-..+|+ ++-+=.-++++||
T Consensus 30 ~~I~~I~~eV~~L~~qV~~f~g~k----~dkey~~L~E~L~k~LLkLD~IeteG~~~vR~aRK~---aVk~iQ~~l~~LD 102 (111)
T 1uk5_A 30 LKVEAILEKVQGLEQAVDSFEGKK----TDKKYLMIEEYLTKELLALDSVDPEGRADVRQARRD---GVRKVQTILEKLE 102 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSCS----SSHHHHHHHHHHHHHHHHHHSCCCSSCHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCc----chHHHHHHHHHHHHHHHHHCCcCcCCcHHHHHHHHH---HHHHHHHHHHHHH
Confidence 446788889999999999998876 6674 7888899999999887 5555554 3444455677777
Q ss_pred HHH
Q 009551 519 RQE 521 (532)
Q Consensus 519 ~~k 521 (532)
.+.
T Consensus 103 ~k~ 105 (111)
T 1uk5_A 103 QKA 105 (111)
T ss_dssp HHH
T ss_pred hcc
Confidence 654
No 31
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=41.84 E-value=64 Score=27.86 Aligned_cols=73 Identities=15% Similarity=0.238 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCh--------------hHHHHHHHHHHHHHHHHH----------------HHHHHH
Q 009551 451 SSVTKRLSELEEKVDTLQAKPSEMPY--------------EKEELLHAAVCRVDALEA----------------ELIATK 500 (532)
Q Consensus 451 ~~~~~r~~~le~~~~~l~~kP~~~p~--------------eke~~l~~~~~Rv~~~e~----------------~l~~tk 500 (532)
.+++.||..||..+..|..+-.++=. +.++|.+.--.|+..|++ ++...+
T Consensus 5 ~~i~~~l~~Leae~q~L~~~E~qry~~eka~AE~A~~~La~~~~l~~~i~er~~~i~~~~~~~~yk~~y~~l~k~Y~~~~ 84 (119)
T 3etw_A 5 ASLVGELQALDAEYQNLANQEEARFNEERAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDAL 84 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Confidence 45666677777766666655443322 223444444455555543 577889
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHh
Q 009551 501 KALHEALMRQEDLLAYIDRQEEA 523 (532)
Q Consensus 501 kaL~~al~kQ~El~ayie~~k~~ 523 (532)
|.|++-+.+|++++.+.|+-|.-
T Consensus 85 keLd~~ik~qekiIdnFE~ik~l 107 (119)
T 3etw_A 85 KKLEAEMEQQKAVISDFEKIQAL 107 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988754
No 32
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=40.02 E-value=1.1e+02 Score=30.59 Aligned_cols=65 Identities=14% Similarity=0.134 Sum_probs=52.4
Q ss_pred HHHHHHHHHhcCCCCCCCh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHH
Q 009551 458 SELEEKVDTLQAKPSEMPY-----EKEELLHAAVCRVDALEAELIATKKALHEALMR-QEDLLAYIDRQEE 522 (532)
Q Consensus 458 ~~le~~~~~l~~kP~~~p~-----eke~~l~~~~~Rv~~~e~~l~~tkkaL~~al~k-Q~El~ayie~~k~ 522 (532)
+++++-+..+.-..-.+|. .=.++|..--.|+..|+.+|..+++.|.+-+.+ ...|.++.+..+.
T Consensus 199 ~~v~~il~s~~f~~~~~p~~~~~~~p~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~ 269 (357)
T 3rrk_A 199 EAARSSLSRLGLAELRFPGAYGAMPLGKAAARMKERARLAPEELVGIREEVARLSRESGEALIALWTRAKD 269 (357)
T ss_dssp HHHHHHHHTTTCCBCCCCGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCeeccCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888888985 345888888999999999999999999999888 6777776666553
No 33
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=39.56 E-value=82 Score=24.94 Aligned_cols=58 Identities=19% Similarity=0.173 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 009551 451 SSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQED 512 (532)
Q Consensus 451 ~~~~~r~~~le~~~~~l~~kP~~~p~eke~~l~~~~~Rv~~~e~~l~~tkkaL~~al~kQ~E 512 (532)
-....|+..+|.++.....+- ...|+-+.+=-.||..||.||+.+.-.|.++..+-++
T Consensus 16 d~a~~~~~~~e~~l~~~e~~~----~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 16 ENALDRAEQAEADKKAAEERS----KQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666654331 3456667777789999999999999999888777554
No 34
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.94 E-value=32 Score=26.70 Aligned_cols=29 Identities=17% Similarity=0.166 Sum_probs=25.0
Q ss_pred CCCCHHHHHHHhhhcCCCHHHHHHHHHHH
Q 009551 13 PCFNVATSLRFLKARKFDIDKAKHMWAEM 41 (532)
Q Consensus 13 ~~~DD~~LLRFLrArkfDvekA~~~l~~~ 41 (532)
|..|...+..-|+++++|++.|++.|.++
T Consensus 30 P~lD~~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 30 PNMDYDIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp SSSCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 45677889999999999999999988664
No 35
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=38.63 E-value=30 Score=25.20 Aligned_cols=28 Identities=11% Similarity=0.042 Sum_probs=23.7
Q ss_pred CCCHHHHHHHhhhcCCCHHHHHHHHHHH
Q 009551 14 CFNVATSLRFLKARKFDIDKAKHMWAEM 41 (532)
Q Consensus 14 ~~DD~~LLRFLrArkfDvekA~~~l~~~ 41 (532)
..+...+.+-|+++++|+++|.++|.+.
T Consensus 17 ~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 17 AISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp SSCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 3455679999999999999999998764
No 36
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=35.24 E-value=30 Score=27.23 Aligned_cols=36 Identities=14% Similarity=0.114 Sum_probs=29.0
Q ss_pred hhhhhhccCCCCCHHHHHHHhhhcCCCHHHHHHHHHH
Q 009551 4 MQAVIFFFNPCFNVATSLRFLKARKFDIDKAKHMWAE 40 (532)
Q Consensus 4 ~qA~~~~l~~~~DD~~LLRFLrArkfDvekA~~~l~~ 40 (532)
.+.+..++|+ ..+.++.+.|..++.|+|.+...|-+
T Consensus 17 I~qV~DLfPd-LG~gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 17 ISQVKDLLPD-LGEGFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp HHHHHHHCCS-SCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred HHHHHHHccc-CCHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 4556666766 55678999999999999999998765
No 37
>2q9q_C DNA replication complex GINS protein PSF1; elongated spindle, helix bundle, replication; HET: DNA; 2.36A {Homo sapiens}
Probab=34.04 E-value=96 Score=28.69 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=18.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHH
Q 009551 473 EMPYEKEELLHAAVCRVDALEAELIAT 499 (532)
Q Consensus 473 ~~p~eke~~l~~~~~Rv~~~e~~l~~t 499 (532)
++|+=.++++..-+.+|+.+++++.+.
T Consensus 20 ~L~py~~dlv~~v~~ei~~~~~~~~~~ 46 (196)
T 2q9q_C 20 QLPAFNEDGLRQVLEEMKALYEQNQSD 46 (196)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 667666777777777777777666543
No 38
>1nyh_A Regulatory protein SIR4; coiled-coil, transcription regulation, repressor, transcript repressor; 3.10A {Saccharomyces cerevisiae} SCOP: h.1.23.1
Probab=33.70 E-value=64 Score=27.92 Aligned_cols=40 Identities=30% Similarity=0.380 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 009551 487 CRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEAKFR 526 (532)
Q Consensus 487 ~Rv~~~e~~l~~tkkaL~~al~kQ~El~ayie~~k~~k~~ 526 (532)
-||-+|.-+|--|||.|+.|-..--|--|-|.+.-++.|+
T Consensus 119 iritslqgdltftkkclenarsqisekdakinklmekdfq 158 (166)
T 1nyh_A 119 IRITSLQGDLTFTKKCLENARSQISEKDAKINKLMEKDFQ 158 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC----
T ss_pred eeeeeeccchhhHHHHHHHHHhhhhhhhHHHHHHHHHhhc
Confidence 4899999999999999999988777777777666555554
No 39
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=32.57 E-value=30 Score=24.32 Aligned_cols=15 Identities=53% Similarity=0.702 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHhc
Q 009551 454 TKRLSELEEKVDTLQ 468 (532)
Q Consensus 454 ~~r~~~le~~~~~l~ 468 (532)
=.|.+|||+++..|+
T Consensus 16 e~~naeLEervstLq 30 (42)
T 2oqq_A 16 ENKNSELEERLSTLQ 30 (42)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555555543
No 40
>1pl5_A Regulatory protein SIR4; parallel coiled coil homodimer, DNA binding protein/transcription complex; 2.50A {Saccharomyces cerevisiae} SCOP: h.1.23.1
Probab=31.41 E-value=21 Score=30.17 Aligned_cols=40 Identities=30% Similarity=0.380 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 009551 487 CRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEAKFR 526 (532)
Q Consensus 487 ~Rv~~~e~~l~~tkkaL~~al~kQ~El~ayie~~k~~k~~ 526 (532)
-||-+|.-+|--|||.|+.|-..--|--|-|.+.-++.|+
T Consensus 95 iritslqgdltftkkclenarsqisekdakinklmekdfq 134 (142)
T 1pl5_A 95 IRITSLQGDLTFTKKCLENARSQISEKDAKINKLMEKDFQ 134 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC----
T ss_pred eeeeeeccchhhHHHHHHHHHhhhhhhhHHHHHHHHHhhh
Confidence 4899999999999999999988777766666665555554
No 41
>2z5i_I TM, tropomyosin alpha-1 chain and general control protein GCN4; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Oryctolagus cuniculus} PDB: 2z5h_I 2g9j_A 1tmz_A
Probab=30.77 E-value=34 Score=23.90 Aligned_cols=20 Identities=35% Similarity=0.395 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 009551 483 HAAVCRVDALEAELIATKKA 502 (532)
Q Consensus 483 ~~~~~Rv~~~e~~l~~tkka 502 (532)
.+|++|++.+|+++..++|.
T Consensus 20 d~A~drAe~~E~~~k~~~~~ 39 (40)
T 2z5i_I 20 ENALDRAEQLENEVARLKKL 39 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHhhcc
Confidence 37899999999999988873
No 42
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=30.07 E-value=67 Score=26.71 Aligned_cols=45 Identities=22% Similarity=0.328 Sum_probs=36.3
Q ss_pred HHHHHHhcCCCCCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009551 461 EEKVDTLQAKPSEM--PYEKEELLHAAVCRVDALEAELIATKKALHEA 506 (532)
Q Consensus 461 e~~~~~l~~kP~~~--p~eke~~l~~~~~Rv~~~e~~l~~tkkaL~~a 506 (532)
+.+.++....|. | |.--|..|+.+-.+|+.|+.+|-+-...|.++
T Consensus 42 ~Km~~vY~~nP~-~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e~ 88 (98)
T 2ke4_A 42 KKMKDVYEKTPQ-MGDPASLEPQIAETLSNIERLKLEVQKYEAWLAEA 88 (98)
T ss_dssp HHHHHHHHHCGG-GCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666665 6 77779999999999999999999988888776
No 43
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=29.62 E-value=64 Score=24.24 Aligned_cols=43 Identities=26% Similarity=0.179 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCCh----hHHHHHHHHHHHHHHHHHHHH
Q 009551 455 KRLSELEEKVDTLQAKPSEMPY----EKEELLHAAVCRVDALEAELI 497 (532)
Q Consensus 455 ~r~~~le~~~~~l~~kP~~~p~----eke~~l~~~~~Rv~~~e~~l~ 497 (532)
+|+.+|-+-++.|...=+.+|. .|=+.|..|++=|..|+.-|.
T Consensus 12 ~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 12 NRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 6899999999999887776764 688999999999999987664
No 44
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=28.17 E-value=1e+02 Score=25.48 Aligned_cols=57 Identities=11% Similarity=0.012 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 009551 452 SVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQED 512 (532)
Q Consensus 452 ~~~~r~~~le~~~~~l~~kP~~~p~eke~~l~~~~~Rv~~~e~~l~~tkkaL~~al~kQ~E 512 (532)
..+.|...+|.++..+..+- ..+|+=+.+=-.|+..||.||+.+...|.++..+-++
T Consensus 20 ~a~drae~~e~~~k~~e~~~----~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee 76 (101)
T 3u1c_A 20 NALDRAEQAEADKKAAEERS----KQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLF 76 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666776666664442 2366666666789999999999999888888766544
No 45
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=26.85 E-value=80 Score=24.83 Aligned_cols=47 Identities=11% Similarity=0.233 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCC---hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009551 455 KRLSELEEKVDTLQAKPSEMP---YEKEELLHAAVCRVDALEAELIATKK 501 (532)
Q Consensus 455 ~r~~~le~~~~~l~~kP~~~p---~eke~~l~~~~~Rv~~~e~~l~~tkk 501 (532)
+|...|=+.+..|.+--|.+| ..|-.+|..|++=|+.|+.++..-+.
T Consensus 22 ~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~ 71 (80)
T 1hlo_A 22 KRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ 71 (80)
T ss_dssp HHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666654433332 47999999999999999988765443
No 46
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=26.38 E-value=59 Score=23.06 Aligned_cols=25 Identities=12% Similarity=0.122 Sum_probs=20.8
Q ss_pred CCHHHHHHHhhhcCCCHHHHHHHHH
Q 009551 15 FNVATSLRFLKARKFDIDKAKHMWA 39 (532)
Q Consensus 15 ~DD~~LLRFLrArkfDvekA~~~l~ 39 (532)
.|..-.++-|++.++|+++|++.|.
T Consensus 20 ~d~~~~~~AL~~~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 20 FDFDRNVAALRRSGGSVQGALDSLL 44 (46)
T ss_dssp CCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4666678999999999999998764
No 47
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=26.29 E-value=89 Score=26.01 Aligned_cols=45 Identities=18% Similarity=0.225 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCCChh----HHHHHHHHHHHHHHHHHHHHH
Q 009551 454 TKRLSELEEKVDTLQAKPSEMPYE----KEELLHAAVCRVDALEAELIA 498 (532)
Q Consensus 454 ~~r~~~le~~~~~l~~kP~~~p~e----ke~~l~~~~~Rv~~~e~~l~~ 498 (532)
..||..|-+-++.|...=+.+|++ |=|.|..|++-|..|..-|..
T Consensus 34 r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 34 MSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 569999999999999888888887 789999999999999887754
No 48
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=25.88 E-value=71 Score=23.46 Aligned_cols=25 Identities=28% Similarity=0.222 Sum_probs=20.2
Q ss_pred CHHHHHHHhhhcCCCHHHHHHHHHH
Q 009551 16 NVATSLRFLKARKFDIDKAKHMWAE 40 (532)
Q Consensus 16 DD~~LLRFLrArkfDvekA~~~l~~ 40 (532)
|+.--++-|++.++|+++|+..|..
T Consensus 23 d~~~n~~AL~~~~Gdv~~Ave~L~~ 47 (54)
T 2dah_A 23 NREANLQALIATGGDVDAAVEKLRQ 47 (54)
T ss_dssp CHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 5555688999999999999887764
No 49
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=25.68 E-value=1.2e+02 Score=21.43 Aligned_cols=35 Identities=26% Similarity=0.409 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 009551 477 EKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLA 515 (532)
Q Consensus 477 eke~~l~~~~~Rv~~~e~~l~~tkkaL~~al~kQ~El~a 515 (532)
.|||+|+. ++|| -.|.++|++=+.+-=.||.||-+
T Consensus 3 tk~~l~qk-I~kV---drEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 3 SKEELIQN-MDRV---DREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp SSSHHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777763 4444 47888988888887778877755
No 50
>3hf0_A GCN4-PLI SIDE chain sequence on AN (alpha-alpha- beta-alpha-beta-alpha-beta) backbone...; helix bundle, foldamer, alpha/beta-peptide, coiled coil; HET: BIL XCP B3Y XPC 16A; 2.10A {Synthetic}
Probab=25.52 E-value=1.4e+02 Score=19.35 Aligned_cols=28 Identities=29% Similarity=0.271 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009551 478 KEELLHAAVCRVDALEAELIATKKALHE 505 (532)
Q Consensus 478 ke~~l~~~~~Rv~~~e~~l~~tkkaL~~ 505 (532)
.|.-|.+.+....-.|.||...|..|.+
T Consensus 6 ~e~kl~e~l~kl~h~e~el~r~k~ll~e 33 (34)
T 3hf0_A 6 XEXKLXEXLXKLXHXEXELXRXKXLLXE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 4566778888899999999999988865
No 51
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=25.42 E-value=72 Score=21.20 Aligned_cols=24 Identities=25% Similarity=0.284 Sum_probs=17.6
Q ss_pred CCHHHHHHHhhhcCCCHHHHHHHH
Q 009551 15 FNVATSLRFLKARKFDIDKAKHMW 38 (532)
Q Consensus 15 ~DD~~LLRFLrArkfDvekA~~~l 38 (532)
.+...-.+.|+++++|++.|...|
T Consensus 16 f~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 16 FDPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp CCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 445556778888888888887654
No 52
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=24.51 E-value=72 Score=23.88 Aligned_cols=26 Identities=12% Similarity=0.129 Sum_probs=21.7
Q ss_pred CCHHHHHHHhhhcCCCHHHHHHHHHH
Q 009551 15 FNVATSLRFLKARKFDIDKAKHMWAE 40 (532)
Q Consensus 15 ~DD~~LLRFLrArkfDvekA~~~l~~ 40 (532)
.|....++-|++.++|+++|++.|..
T Consensus 30 ~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 30 FDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp CCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 46667799999999999999988754
No 53
>2ovc_A Potassium voltage-gated channel subfamily KQT MEM; potassium channel, ION channel assemb coiled-coil, tetramer, transport protein; 2.07A {Homo sapiens}
Probab=24.49 E-value=33 Score=22.99 Aligned_cols=20 Identities=25% Similarity=0.464 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHhcCC
Q 009551 451 SSVTKRLSELEEKVDTLQAK 470 (532)
Q Consensus 451 ~~~~~r~~~le~~~~~l~~k 470 (532)
.+++-||-++|++|..+..|
T Consensus 6 ~Sm~~Rl~kVE~qv~~md~K 25 (33)
T 2ovc_A 6 ISMMGRVVKVEKQVQSIEHK 25 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 57889999999999887654
No 54
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus}
Probab=24.39 E-value=84 Score=30.03 Aligned_cols=46 Identities=17% Similarity=0.320 Sum_probs=30.5
Q ss_pred HHHHHHHH---HHHHH--------HHHHHHHHHhHHHHHHHH-HHHHHhhhh-hhccCC
Q 009551 487 CRVDALEA---ELIAT--------KKALHEALMRQEDLLAYI-DRQEEAKFR-KKKLCW 532 (532)
Q Consensus 487 ~Rv~~~e~---~l~~t--------kkaL~~al~kQ~El~ayi-e~~k~~k~~-~~~fc~ 532 (532)
+|.++||. ||-+- .|.++.--.+|-||-+|+ +.++++=.. ||+|||
T Consensus 130 ~~~~~leK~~~elkK~~rksqk~~~k~~e~v~~~q~el~~f~~~s~r~Al~EErRRYcF 188 (222)
T 3ok8_A 130 HRAANLEKCMSELWRMERKRDKNAREMKESVNRLHAQMQAFVSESKRAAELEEKRRYRF 188 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhccChHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777 66433 224777778999999999 455544222 667886
No 55
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=23.64 E-value=78 Score=23.01 Aligned_cols=25 Identities=28% Similarity=0.150 Sum_probs=19.1
Q ss_pred CHHHHHHHhhhcCCCHHHHHHHHHH
Q 009551 16 NVATSLRFLKARKFDIDKAKHMWAE 40 (532)
Q Consensus 16 DD~~LLRFLrArkfDvekA~~~l~~ 40 (532)
|...-++-|++.++|+++|++.|..
T Consensus 25 ~~~~~~~AL~~t~gnve~Ave~L~~ 49 (53)
T 2knz_A 25 NREANLQALIATGGDINAAIERLLG 49 (53)
T ss_dssp CHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6666778888888888888877643
No 56
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=23.43 E-value=82 Score=24.40 Aligned_cols=26 Identities=23% Similarity=0.109 Sum_probs=21.6
Q ss_pred CCHHHHHHHhhhcCCCHHHHHHHHHH
Q 009551 15 FNVATSLRFLKARKFDIDKAKHMWAE 40 (532)
Q Consensus 15 ~DD~~LLRFLrArkfDvekA~~~l~~ 40 (532)
.|..--+|-|++.++||++|++.|..
T Consensus 32 ~d~~an~~AL~at~Gnve~Ave~L~~ 57 (67)
T 2dna_A 32 VNYNANLQALIATDGDTNAAIYKLKS 57 (67)
T ss_dssp CCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 46666789999999999999987754
No 57
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=22.31 E-value=3e+02 Score=32.01 Aligned_cols=61 Identities=21% Similarity=0.248 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHhc------CCCCCCChhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 009551 453 VTKRLSELEEKVDTLQ------AKPSEMPYEK--EELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAY 516 (532)
Q Consensus 453 ~~~r~~~le~~~~~l~------~kP~~~p~ek--e~~l~~~~~Rv~~~e~~l~~tkkaL~~al~kQ~El~ay 516 (532)
..+-.++||..+..|+ ++|+-+|++- -+-|+.++.+....|+| ...+|.+.+.||+.|..-
T Consensus 819 r~~ek~~Le~l~~~iqtklrl~~r~~~~p~~gl~~~dL~~~W~~Le~ae~e---Re~~L~~el~Rqe~L~~L 887 (1010)
T 1g8x_A 819 KGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQE---HAEALRIELKRQKKIAVL 887 (1010)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCCCCCCCTTCSHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3334445554444443 5566677751 34588888776666665 446999999999888643
No 58
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=22.02 E-value=45 Score=23.68 Aligned_cols=17 Identities=41% Similarity=0.587 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHhc
Q 009551 452 SVTKRLSELEEKVDTLQ 468 (532)
Q Consensus 452 ~~~~r~~~le~~~~~l~ 468 (532)
.+=+||.-||.|++.|.
T Consensus 20 ~LE~Ri~~LE~KLd~L~ 36 (43)
T 2pnv_A 20 DFEKRIVTLETKLETLI 36 (43)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44567777777777664
No 59
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=21.89 E-value=2.3e+02 Score=23.16 Aligned_cols=60 Identities=20% Similarity=0.243 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 009551 449 LLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQED 512 (532)
Q Consensus 449 ~~~~~~~r~~~le~~~~~l~~kP~~~p~eke~~l~~~~~Rv~~~e~~l~~tkkaL~~al~kQ~E 512 (532)
.+.-+=+-|.+||..+..++ +|+.+-| +-|-.++.++...==.|++.=-.||+.+.+|.|
T Consensus 20 rL~~Yr~~IeelE~~L~s~s-~~~~~Tp---q~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~Ke 79 (93)
T 3t98_B 20 QLQQYRQQIEELENHLATQA-NNSHITP---QDLSMAMQKIYQTFVALAAQLQSIHENVKVLKE 79 (93)
T ss_dssp HHHHHHHHHHHHHHHHSCHH-HHTTSCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcc-CCCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566778888888765 6666654 445555555554444444444444444444443
No 60
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=21.88 E-value=1.3e+02 Score=23.15 Aligned_cols=42 Identities=36% Similarity=0.525 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCCh---hHHHHHHHHHHHHHHHHHHH
Q 009551 455 KRLSELEEKVDTLQAKPSEMPY---EKEELLHAAVCRVDALEAEL 496 (532)
Q Consensus 455 ~r~~~le~~~~~l~~kP~~~p~---eke~~l~~~~~Rv~~~e~~l 496 (532)
+|+..|-+-+..|..--+..|. .|=+.|..|++=|..|+.-|
T Consensus 22 ~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 22 RRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999887665553 47899999999999998754
No 61
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=21.58 E-value=2.6e+02 Score=21.99 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=20.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHH
Q 009551 475 PYEKEELLHAAVCRVDALEAELIA 498 (532)
Q Consensus 475 p~eke~~l~~~~~Rv~~~e~~l~~ 498 (532)
=.+|-.+|..|++=|+.|+.+...
T Consensus 38 k~~Ka~IL~~Ai~YI~~Lq~~~~~ 61 (82)
T 1am9_A 38 KLNKSAVLRKAIDYIRFLQHSNQK 61 (82)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999987764
No 62
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=21.41 E-value=63 Score=22.32 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=20.1
Q ss_pred CHHHHHHHhhhcCCCHHHHHHHH
Q 009551 16 NVATSLRFLKARKFDIDKAKHMW 38 (532)
Q Consensus 16 DD~~LLRFLrArkfDvekA~~~l 38 (532)
+...-..||.+.+||++.|+..+
T Consensus 19 ~~~~A~~~L~~~~wdle~Ai~~f 41 (46)
T 1v92_A 19 EEDRARFFLESAGWDLQIALASF 41 (46)
T ss_dssp CHHHHHHHHHHTTSCSHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHH
Confidence 56778899999999999998775
No 63
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=20.65 E-value=85 Score=24.73 Aligned_cols=25 Identities=32% Similarity=0.208 Sum_probs=20.0
Q ss_pred CCHHHHHHHhhhcCCCHHHHHHHHH
Q 009551 15 FNVATSLRFLKARKFDIDKAKHMWA 39 (532)
Q Consensus 15 ~DD~~LLRFLrArkfDvekA~~~l~ 39 (532)
.|..-.++-|++.++|+++|++.|.
T Consensus 42 ~dr~~~~~AL~~t~Gnve~Ave~L~ 66 (74)
T 1vej_A 42 ANRDANLQALVATDGDIHAAIEMLL 66 (74)
T ss_dssp CCHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3666678889999999999888764
Done!