Query 009552
Match_columns 532
No_of_seqs 384 out of 2030
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 14:29:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009552.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009552hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1855 Predicted RNA-binding 100.0 1.3E-65 2.8E-70 526.9 29.6 369 149-530 84-479 (484)
2 cd08032 LARP_7 La RNA-binding 99.9 2.9E-27 6.4E-32 197.8 5.7 80 195-274 3-82 (82)
3 cd08033 LARP_6 La RNA-binding 99.9 4.2E-27 9.1E-32 194.9 4.4 76 199-274 2-77 (77)
4 cd08035 LARP_4 La RNA-binding 99.9 1.1E-26 2.4E-31 190.5 4.4 73 199-273 2-74 (75)
5 cd08036 LARP_5 La RNA-binding 99.9 1.5E-26 3.3E-31 188.5 4.5 73 199-273 2-74 (75)
6 cd08029 LA_like_fungal La-moti 99.9 4.8E-26 1E-30 188.3 4.5 75 199-274 2-76 (76)
7 smart00715 LA Domain in the RN 99.9 7.2E-26 1.6E-30 189.2 5.0 80 195-275 1-80 (80)
8 cd08028 LARP_3 La RNA-binding 99.9 1E-25 2.3E-30 188.7 5.2 79 195-274 2-82 (82)
9 cd08030 LA_like_plant La-motif 99.9 1.2E-25 2.5E-30 191.0 4.8 77 198-274 2-90 (90)
10 KOG2591 c-Mpl binding protein, 99.9 1.2E-24 2.6E-29 230.2 10.7 169 188-392 87-261 (684)
11 cd08031 LARP_4_5_like La RNA-b 99.9 4.7E-25 1E-29 181.8 4.3 74 199-274 2-75 (75)
12 cd08037 LARP_1 La RNA-binding 99.9 2.4E-24 5.1E-29 176.2 4.3 72 199-274 2-73 (73)
13 cd08038 LARP_2 La RNA-binding 99.9 4E-24 8.7E-29 174.8 4.8 72 199-274 2-73 (73)
14 cd08034 LARP_1_2 La RNA-bindin 99.9 5.8E-24 1.3E-28 174.3 4.5 72 199-274 2-73 (73)
15 cd07323 LAM LA motif RNA-bindi 99.9 1.3E-23 2.7E-28 173.9 4.8 74 199-274 2-75 (75)
16 KOG4213 RNA-binding protein La 99.9 5.8E-22 1.3E-26 185.1 7.2 155 194-368 10-171 (205)
17 PF05383 La: La domain; Inter 99.8 1.7E-21 3.8E-26 154.9 2.4 60 201-260 1-61 (61)
18 TIGR01659 sex-lethal sex-letha 99.7 2.8E-15 6E-20 157.3 17.3 80 286-382 191-270 (346)
19 PLN03134 glycine-rich RNA-bind 99.6 2.7E-15 5.9E-20 139.0 13.3 81 287-384 33-113 (144)
20 TIGR01648 hnRNP-R-Q heterogene 99.5 1.7E-13 3.8E-18 151.6 16.6 75 287-386 232-308 (578)
21 COG5193 LHP1 La protein, small 99.5 4.9E-15 1.1E-19 153.3 2.8 164 185-365 44-244 (438)
22 KOG0121 Nuclear cap-binding pr 99.4 2.3E-13 5.1E-18 121.9 7.6 97 286-399 34-130 (153)
23 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 6.9E-13 1.5E-17 137.8 10.2 81 288-385 269-349 (352)
24 TIGR01659 sex-lethal sex-letha 99.4 1.4E-12 3E-17 137.1 10.0 80 287-383 106-185 (346)
25 PF00076 RRM_1: RNA recognitio 99.4 1.6E-12 3.6E-17 102.9 7.2 69 291-377 1-69 (70)
26 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.3 2.1E-12 4.5E-17 134.3 9.3 79 288-383 3-81 (352)
27 TIGR01628 PABP-1234 polyadenyl 99.3 7.6E-12 1.7E-16 138.8 10.3 82 286-385 283-364 (562)
28 PLN03120 nucleic acid binding 99.3 1.1E-11 2.4E-16 124.3 10.0 76 287-383 3-78 (260)
29 KOG0107 Alternative splicing f 99.3 6.9E-12 1.5E-16 117.9 7.3 75 288-384 10-84 (195)
30 TIGR01645 half-pint poly-U bin 99.3 9E-12 2E-16 138.5 9.1 81 287-384 203-283 (612)
31 TIGR01642 U2AF_lg U2 snRNP aux 99.3 2E-11 4.3E-16 133.3 11.3 79 288-383 295-373 (509)
32 KOG0105 Alternative splicing f 99.2 2.4E-11 5.1E-16 115.1 8.6 75 287-381 5-79 (241)
33 KOG0113 U1 small nuclear ribon 99.2 8E-11 1.7E-15 118.5 12.5 85 287-388 100-184 (335)
34 PF14259 RRM_6: RNA recognitio 99.2 5.4E-11 1.2E-15 95.4 7.3 65 291-373 1-65 (70)
35 KOG0122 Translation initiation 99.2 5.5E-11 1.2E-15 116.9 8.4 79 287-382 188-266 (270)
36 KOG0114 Predicted RNA-binding 99.2 9.7E-11 2.1E-15 101.8 8.9 75 287-381 17-91 (124)
37 TIGR01645 half-pint poly-U bin 99.2 5.3E-11 1.1E-15 132.4 8.6 78 287-381 106-183 (612)
38 TIGR01622 SF-CC1 splicing fact 99.2 1.1E-10 2.5E-15 125.8 11.0 79 288-383 186-264 (457)
39 TIGR01628 PABP-1234 polyadenyl 99.2 1.1E-10 2.3E-15 129.7 10.4 80 286-383 176-259 (562)
40 TIGR01622 SF-CC1 splicing fact 99.1 1.2E-10 2.6E-15 125.6 10.2 80 285-382 86-165 (457)
41 KOG0130 RNA-binding protein RB 99.1 1.1E-10 2.4E-15 105.7 8.0 86 285-387 69-154 (170)
42 COG0724 RNA-binding proteins ( 99.1 3.5E-10 7.6E-15 109.0 11.7 79 288-383 115-193 (306)
43 smart00362 RRM_2 RNA recogniti 99.1 2.1E-10 4.6E-15 89.2 8.2 69 290-377 1-69 (72)
44 TIGR01648 hnRNP-R-Q heterogene 99.1 1.8E-10 3.9E-15 127.8 10.8 68 287-372 57-124 (578)
45 KOG0117 Heterogeneous nuclear 99.1 2E-10 4.4E-15 120.6 10.5 166 194-384 134-330 (506)
46 PLN03121 nucleic acid binding 99.1 1.9E-10 4.1E-15 114.0 9.4 76 287-383 4-79 (243)
47 PLN03213 repressor of silencin 99.1 1.9E-10 4.2E-15 121.8 9.2 75 287-382 9-85 (759)
48 KOG0144 RNA-binding protein CU 99.1 8.7E-11 1.9E-15 122.9 5.9 143 211-388 63-209 (510)
49 KOG0125 Ataxin 2-binding prote 99.1 1.4E-10 3E-15 118.0 6.9 81 287-386 95-175 (376)
50 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.1 3E-10 6.5E-15 124.3 9.4 73 288-383 2-76 (481)
51 smart00360 RRM RNA recognition 99.0 6.6E-10 1.4E-14 86.0 7.8 70 293-379 1-70 (71)
52 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.0 7.7E-10 1.7E-14 121.1 9.9 75 287-383 274-349 (481)
53 KOG0148 Apoptosis-promoting RN 99.0 9.2E-10 2E-14 109.7 8.9 68 285-375 161-228 (321)
54 cd00590 RRM RRM (RNA recogniti 99.0 1.9E-09 4E-14 84.3 8.9 73 290-380 1-73 (74)
55 KOG0116 RasGAP SH3 binding pro 99.0 1.6E-09 3.5E-14 115.8 11.3 81 288-388 288-368 (419)
56 KOG0117 Heterogeneous nuclear 99.0 2.5E-09 5.4E-14 112.6 12.0 79 286-381 81-160 (506)
57 KOG0108 mRNA cleavage and poly 99.0 6.8E-10 1.5E-14 119.3 7.9 82 289-387 19-100 (435)
58 KOG0149 Predicted RNA-binding 99.0 1.1E-09 2.5E-14 107.3 7.3 78 287-382 11-88 (247)
59 KOG0126 Predicted RNA-binding 98.9 1.2E-10 2.5E-15 110.2 -1.1 82 286-384 33-114 (219)
60 KOG0111 Cyclophilin-type pepti 98.9 7.2E-10 1.6E-14 107.6 4.2 82 287-385 9-90 (298)
61 KOG4212 RNA-binding protein hn 98.9 6.6E-09 1.4E-13 109.1 10.6 78 287-382 43-121 (608)
62 KOG0131 Splicing factor 3b, su 98.9 2.5E-09 5.3E-14 101.4 6.5 81 287-384 8-88 (203)
63 KOG0145 RNA-binding protein EL 98.9 3.3E-09 7.3E-14 105.2 7.7 113 251-384 94-208 (360)
64 KOG4207 Predicted splicing fac 98.9 2.3E-09 5E-14 103.4 5.9 78 289-383 14-91 (256)
65 PF13893 RRM_5: RNA recognitio 98.9 6E-09 1.3E-13 80.5 7.2 55 305-381 1-55 (56)
66 KOG0127 Nucleolar protein fibr 98.9 4.9E-09 1.1E-13 112.6 7.9 160 203-386 20-197 (678)
67 KOG0127 Nucleolar protein fibr 98.8 8.4E-09 1.8E-13 110.9 7.9 81 288-385 292-378 (678)
68 KOG0148 Apoptosis-promoting RN 98.8 7E-09 1.5E-13 103.5 6.6 81 289-386 63-143 (321)
69 KOG0132 RNA polymerase II C-te 98.8 7.5E-09 1.6E-13 114.8 7.5 95 271-388 402-498 (894)
70 TIGR01642 U2AF_lg U2 snRNP aux 98.8 9.6E-09 2.1E-13 112.3 7.7 72 285-380 172-255 (509)
71 smart00361 RRM_1 RNA recogniti 98.8 1.8E-08 4E-13 81.7 6.8 63 302-379 2-69 (70)
72 KOG0153 Predicted RNA-binding 98.7 4.6E-08 1E-12 100.6 10.5 155 188-386 136-302 (377)
73 KOG0123 Polyadenylate-binding 98.7 4.6E-08 1E-12 103.8 10.2 78 290-387 78-155 (369)
74 KOG0145 RNA-binding protein EL 98.7 3E-08 6.5E-13 98.5 7.5 80 288-384 41-120 (360)
75 KOG0144 RNA-binding protein CU 98.7 2.7E-08 5.8E-13 104.6 7.3 73 282-371 28-100 (510)
76 KOG2590 RNA-binding protein LA 98.6 3.5E-08 7.6E-13 106.0 4.6 63 198-267 301-363 (448)
77 COG5193 LHP1 La protein, small 98.6 1.8E-08 4E-13 105.1 1.4 61 198-260 271-331 (438)
78 KOG1924 RhoA GTPase effector D 98.5 2.9E-07 6.3E-12 102.5 10.2 13 97-109 589-601 (1102)
79 KOG1924 RhoA GTPase effector D 98.5 3.3E-07 7.1E-12 102.1 10.0 22 80-101 585-606 (1102)
80 KOG0533 RRM motif-containing p 98.5 2.8E-07 6.2E-12 92.2 8.6 81 287-385 82-162 (243)
81 KOG0124 Polypyrimidine tract-b 98.5 9.7E-08 2.1E-12 98.5 5.1 76 289-381 114-189 (544)
82 KOG0109 RNA-binding protein LA 98.5 1.9E-07 4.2E-12 94.2 5.9 76 287-387 77-152 (346)
83 KOG0415 Predicted peptidyl pro 98.5 2.1E-07 4.6E-12 95.8 6.1 79 287-382 238-316 (479)
84 KOG4206 Spliceosomal protein s 98.4 5.1E-07 1.1E-11 88.5 7.8 79 288-386 9-91 (221)
85 KOG4205 RNA-binding protein mu 98.4 1.1E-07 2.4E-12 98.5 3.3 149 204-386 22-177 (311)
86 KOG0147 Transcriptional coacti 98.4 3.3E-07 7.1E-12 99.1 6.4 81 291-388 281-361 (549)
87 KOG4212 RNA-binding protein hn 98.4 4.4E-07 9.6E-12 95.6 6.9 75 286-382 534-608 (608)
88 KOG0109 RNA-binding protein LA 98.4 2.8E-07 6E-12 93.1 5.0 70 290-384 4-73 (346)
89 KOG0110 RNA-binding protein (R 98.4 6.4E-07 1.4E-11 99.2 7.5 80 290-383 517-596 (725)
90 KOG4208 Nucleolar RNA-binding 98.3 1.2E-06 2.7E-11 84.7 7.8 81 287-384 48-129 (214)
91 KOG4209 Splicing factor RNPS1, 98.3 1.2E-06 2.6E-11 87.5 7.5 86 282-385 95-180 (231)
92 KOG0123 Polyadenylate-binding 98.3 1.3E-06 2.8E-11 92.9 7.4 139 223-384 107-245 (369)
93 KOG0131 Splicing factor 3b, su 98.2 3.2E-06 6.9E-11 80.6 6.8 83 289-388 97-180 (203)
94 KOG0110 RNA-binding protein (R 98.2 4.7E-06 1E-10 92.5 8.7 78 288-382 613-690 (725)
95 KOG0146 RNA-binding protein ET 98.2 2E-06 4.3E-11 86.0 5.2 83 284-383 281-363 (371)
96 KOG4660 Protein Mei2, essentia 98.2 1.5E-06 3.3E-11 94.2 4.3 72 285-378 72-143 (549)
97 KOG4661 Hsp27-ERE-TATA-binding 98.1 2.9E-05 6.2E-10 84.4 12.9 79 287-382 404-482 (940)
98 KOG4454 RNA binding protein (R 98.0 2.3E-06 4.9E-11 83.6 2.2 80 287-385 8-87 (267)
99 KOG0106 Alternative splicing f 98.0 5.7E-06 1.2E-10 81.5 4.7 62 290-376 3-64 (216)
100 KOG1548 Transcription elongati 97.9 1.4E-05 3E-10 82.6 5.6 88 284-382 130-218 (382)
101 KOG0124 Polypyrimidine tract-b 97.8 5.1E-05 1.1E-09 78.9 8.4 77 287-380 209-285 (544)
102 PF08777 RRM_3: RNA binding mo 97.8 6.5E-05 1.4E-09 66.3 8.0 59 289-370 2-60 (105)
103 KOG0146 RNA-binding protein ET 97.8 1.9E-05 4.2E-10 79.1 4.7 80 286-383 17-99 (371)
104 KOG4205 RNA-binding protein mu 97.8 2E-05 4.4E-10 81.8 4.4 62 287-365 5-66 (311)
105 KOG1457 RNA binding protein (c 97.8 0.00013 2.8E-09 71.8 9.4 80 288-383 34-116 (284)
106 KOG4206 Spliceosomal protein s 97.7 7E-05 1.5E-09 73.6 6.7 161 198-380 23-217 (221)
107 PF11608 Limkain-b1: Limkain b 97.6 0.00035 7.5E-09 59.2 8.7 67 289-382 3-74 (90)
108 KOG0151 Predicted splicing reg 97.5 0.00012 2.6E-09 81.5 5.4 100 268-381 144-253 (877)
109 KOG4211 Splicing factor hnRNP- 97.5 0.00021 4.5E-09 77.0 7.1 58 289-366 11-68 (510)
110 KOG0147 Transcriptional coacti 97.4 7.6E-05 1.7E-09 81.1 2.4 81 283-381 174-254 (549)
111 KOG1190 Polypyrimidine tract-b 97.4 0.0005 1.1E-08 72.7 8.1 73 288-382 297-370 (492)
112 KOG4211 Splicing factor hnRNP- 97.4 0.00029 6.3E-09 75.9 6.4 74 288-379 103-176 (510)
113 KOG1457 RNA binding protein (c 97.4 0.00015 3.4E-09 71.2 4.0 61 289-370 211-271 (284)
114 KOG1995 Conserved Zn-finger pr 97.3 0.0002 4.3E-09 74.7 4.6 91 287-386 65-155 (351)
115 PF14605 Nup35_RRM_2: Nup53/35 97.3 0.00061 1.3E-08 52.8 5.6 52 289-364 2-53 (53)
116 KOG0106 Alternative splicing f 97.2 0.0002 4.3E-09 70.7 2.5 69 286-379 97-165 (216)
117 KOG0226 RNA-binding proteins [ 97.1 0.00087 1.9E-08 67.2 6.3 76 288-380 190-265 (290)
118 PF04059 RRM_2: RNA recognitio 97.1 0.0026 5.6E-08 55.6 8.3 66 289-371 2-69 (97)
119 KOG4307 RNA binding protein RB 97.1 0.0011 2.3E-08 74.1 7.2 75 289-381 868-943 (944)
120 KOG2314 Translation initiation 96.6 0.0037 8E-08 68.6 6.8 77 288-382 58-141 (698)
121 KOG0105 Alternative splicing f 96.6 0.019 4.2E-07 55.4 10.2 75 288-386 115-189 (241)
122 KOG1548 Transcription elongati 96.6 0.0078 1.7E-07 62.7 8.1 75 287-382 264-349 (382)
123 COG5175 MOT2 Transcriptional r 96.4 0.0089 1.9E-07 62.1 7.2 83 285-381 111-199 (480)
124 KOG1190 Polypyrimidine tract-b 96.3 0.0027 5.9E-08 67.3 3.0 72 287-381 27-98 (492)
125 KOG2202 U2 snRNP splicing fact 96.2 0.0017 3.7E-08 65.1 1.2 62 302-381 82-144 (260)
126 KOG4210 Nuclear localization s 96.2 0.0068 1.5E-07 62.6 5.6 75 288-380 184-259 (285)
127 KOG0129 Predicted RNA-binding 96.0 0.02 4.4E-07 62.5 8.1 69 285-368 256-327 (520)
128 KOG0120 Splicing factor U2AF, 95.9 0.0062 1.3E-07 67.0 3.6 80 288-384 289-368 (500)
129 KOG0120 Splicing factor U2AF, 95.4 0.036 7.8E-07 61.1 7.0 60 303-376 424-483 (500)
130 PF05172 Nup35_RRM: Nup53/35/4 95.3 0.063 1.4E-06 47.2 7.1 82 287-381 5-86 (100)
131 KOG0128 RNA-binding protein SA 95.0 0.016 3.5E-07 66.4 3.1 76 288-381 736-811 (881)
132 PF09421 FRQ: Frequency clock 94.9 0.018 3.9E-07 67.2 3.3 53 224-276 471-524 (989)
133 KOG1456 Heterogeneous nuclear 94.9 0.099 2.1E-06 55.3 8.3 73 287-381 286-359 (494)
134 PF08952 DUF1866: Domain of un 94.8 0.059 1.3E-06 50.3 5.7 61 302-388 50-110 (146)
135 PF15023 DUF4523: Protein of u 94.7 0.13 2.7E-06 48.0 7.6 62 285-370 83-148 (166)
136 KOG3152 TBP-binding protein, a 94.4 0.04 8.7E-07 55.6 3.8 84 287-375 73-156 (278)
137 KOG0129 Predicted RNA-binding 94.4 0.087 1.9E-06 57.7 6.7 63 287-366 369-432 (520)
138 KOG4849 mRNA cleavage factor I 94.4 0.2 4.3E-06 52.6 8.9 76 288-380 80-157 (498)
139 PF10309 DUF2414: Protein of u 94.3 0.18 4E-06 40.5 6.8 53 289-367 6-62 (62)
140 KOG1996 mRNA splicing factor [ 94.1 0.11 2.3E-06 53.5 6.3 62 302-379 300-361 (378)
141 KOG3671 Actin regulatory prote 94.0 0.32 6.9E-06 53.3 9.8 7 198-204 495-501 (569)
142 KOG2068 MOT2 transcription fac 93.6 0.026 5.5E-07 58.9 0.9 81 286-380 75-158 (327)
143 KOG1365 RNA-binding protein Fu 93.4 0.19 4.2E-06 53.3 6.8 59 289-366 162-225 (508)
144 KOG1855 Predicted RNA-binding 92.9 0.65 1.4E-05 50.1 9.9 28 23-50 18-45 (484)
145 KOG4307 RNA binding protein RB 92.7 7 0.00015 44.8 17.9 76 289-382 435-511 (944)
146 KOG4574 RNA-binding protein (c 92.7 0.072 1.6E-06 61.2 2.6 74 290-386 300-373 (1007)
147 PF08675 RNA_bind: RNA binding 92.6 0.41 8.8E-06 40.8 6.4 64 290-382 10-73 (87)
148 KOG1923 Rac1 GTPase effector F 92.3 0.46 1E-05 54.4 8.3 15 192-206 388-402 (830)
149 PF07576 BRAP2: BRCA1-associat 92.2 0.93 2E-05 40.5 8.6 64 290-372 15-79 (110)
150 KOG0112 Large RNA-binding prot 92.0 0.041 8.9E-07 63.5 -0.2 79 286-382 370-448 (975)
151 KOG2416 Acinus (induces apopto 92.0 0.087 1.9E-06 58.5 2.2 64 287-374 443-507 (718)
152 KOG1830 Wiskott Aldrich syndro 91.7 1.6 3.5E-05 47.1 11.0 6 33-38 317-322 (518)
153 KOG4676 Splicing factor, argin 91.5 0.23 5E-06 52.9 4.5 77 289-380 8-84 (479)
154 KOG1456 Heterogeneous nuclear 91.4 0.64 1.4E-05 49.4 7.7 75 289-385 121-197 (494)
155 PRK11634 ATP-dependent RNA hel 91.1 1.4 2.9E-05 50.6 10.7 65 298-383 497-561 (629)
156 KOG1365 RNA-binding protein Fu 90.9 0.25 5.5E-06 52.5 4.2 75 288-382 280-357 (508)
157 KOG0128 RNA-binding protein SA 90.0 0.028 6.1E-07 64.5 -4.0 65 287-368 666-730 (881)
158 KOG0115 RNA-binding protein p5 89.9 0.4 8.7E-06 48.6 4.4 66 289-372 32-97 (275)
159 KOG0112 Large RNA-binding prot 89.9 0.39 8.5E-06 55.8 4.9 77 285-384 452-530 (975)
160 KOG2318 Uncharacterized conser 87.8 1.4 3E-05 49.2 7.1 92 287-382 173-303 (650)
161 PF07145 PAM2: Ataxin-2 C-term 87.2 0.39 8.3E-06 29.4 1.4 16 36-51 2-17 (18)
162 KOG1923 Rac1 GTPase effector F 87.1 1.7 3.8E-05 50.0 7.5 8 292-299 532-539 (830)
163 KOG1819 FYVE finger-containing 87.0 0.32 7E-06 53.1 1.8 10 304-313 741-750 (990)
164 PF05918 API5: Apoptosis inhib 85.7 0.24 5.3E-06 55.6 0.0 7 196-202 240-246 (556)
165 KOG2135 Proteins containing th 84.9 0.46 1E-05 51.7 1.6 75 286-384 370-445 (526)
166 KOG0804 Cytoplasmic Zn-finger 84.3 3.5 7.5E-05 45.0 7.8 68 288-374 74-142 (493)
167 PRK00819 RNA 2'-phosphotransfe 83.5 2.1 4.6E-05 41.5 5.4 82 224-313 26-113 (179)
168 PF03467 Smg4_UPF3: Smg-4/UPF3 83.1 1.2 2.7E-05 42.8 3.6 70 287-371 6-79 (176)
169 PF12901 SUZ-C: SUZ-C motif; 82.7 0.76 1.7E-05 32.6 1.4 15 509-523 20-34 (34)
170 KOG3973 Uncharacterized conser 82.2 4 8.6E-05 43.2 7.0 7 304-310 244-250 (465)
171 PF04847 Calcipressin: Calcipr 81.0 2.2 4.8E-05 41.5 4.5 60 300-382 7-68 (184)
172 COG5178 PRP8 U5 snRNP spliceos 78.6 1.6 3.5E-05 52.1 3.1 17 187-203 78-94 (2365)
173 KOG4676 Splicing factor, argin 78.4 0.49 1.1E-05 50.5 -1.0 62 284-367 148-209 (479)
174 KOG2193 IGF-II mRNA-binding pr 77.4 2.1 4.6E-05 46.2 3.4 58 290-370 3-60 (584)
175 PF01885 PTS_2-RNA: RNA 2'-pho 76.8 2 4.4E-05 41.8 2.8 52 225-276 26-82 (186)
176 KOG4285 Mitotic phosphoprotein 76.0 7.7 0.00017 40.5 6.8 63 288-375 197-259 (350)
177 COG5178 PRP8 U5 snRNP spliceos 75.1 1.9 4E-05 51.7 2.3 13 251-263 224-236 (2365)
178 KOG4210 Nuclear localization s 74.8 1.7 3.6E-05 45.1 1.8 78 287-381 87-164 (285)
179 PF03276 Gag_spuma: Spumavirus 73.8 13 0.00029 41.6 8.3 11 107-117 258-268 (582)
180 KOG2278 RNA:NAD 2'-phosphotran 72.8 2.6 5.7E-05 40.6 2.4 39 224-262 27-65 (207)
181 PF03880 DbpA: DbpA RNA bindin 72.1 16 0.00035 29.9 6.6 59 298-382 11-74 (74)
182 KOG3973 Uncharacterized conser 71.4 14 0.00031 39.2 7.5 11 448-458 368-378 (465)
183 KOG2891 Surface glycoprotein [ 71.2 1.5 3.2E-05 45.1 0.3 72 289-369 150-244 (445)
184 KOG3423 Transcription initiati 70.4 7.3 0.00016 37.3 4.7 97 191-313 66-166 (176)
185 KOG4672 Uncharacterized conser 67.3 41 0.00088 36.6 9.9 9 301-309 471-479 (487)
186 PF11767 SET_assoc: Histone ly 67.2 13 0.00028 30.3 4.9 48 298-371 10-57 (66)
187 KOG2253 U1 snRNP complex, subu 66.7 3.8 8.2E-05 46.6 2.4 69 287-381 39-107 (668)
188 PTZ00315 2'-phosphotransferase 64.5 11 0.00025 42.7 5.6 84 224-313 398-495 (582)
189 PRK15319 AIDA autotransporter- 62.1 14 0.0003 46.9 6.1 10 233-242 1808-1817(2039)
190 PHA03420 E4 protein; Provision 61.6 5.1 0.00011 36.3 1.8 7 158-164 77-83 (137)
191 PF03276 Gag_spuma: Spumavirus 54.8 45 0.00098 37.5 7.9 10 194-203 302-311 (582)
192 KOG2675 Adenylate cyclase-asso 53.1 15 0.00033 40.1 4.0 15 204-218 335-349 (480)
193 PF03468 XS: XS domain; Inter 51.9 28 0.00062 31.3 5.0 47 290-356 10-65 (116)
194 KOG4660 Protein Mei2, essentia 50.8 23 0.0005 39.7 5.0 78 288-375 361-458 (549)
195 PF10567 Nab6_mRNP_bdg: RNA-re 50.6 36 0.00078 35.5 6.0 71 285-365 12-82 (309)
196 COG0724 RNA-binding proteins ( 47.6 52 0.0011 31.2 6.4 36 286-321 223-258 (306)
197 KOG3428 Small nuclear ribonucl 46.9 11 0.00023 33.7 1.3 9 446-454 97-105 (109)
198 KOG0921 Dosage compensation co 46.2 61 0.0013 38.9 7.5 11 515-525 1266-1276(1282)
199 KOG1925 Rac1 GTPase effector F 41.1 36 0.00079 38.0 4.5 12 289-300 520-531 (817)
200 KOG4849 mRNA cleavage factor I 40.9 5E+02 0.011 28.1 12.6 6 144-149 342-347 (498)
201 PF00398 RrnaAD: Ribosomal RNA 38.7 15 0.00032 37.3 1.1 110 193-319 14-130 (262)
202 cd04904 ACT_AAAH ACT domain of 38.3 1.9E+02 0.0042 23.3 7.6 52 301-369 13-65 (74)
203 KOG1925 Rac1 GTPase effector F 37.2 62 0.0013 36.3 5.5 14 39-52 193-206 (817)
204 KOG4483 Uncharacterized conser 36.6 70 0.0015 34.8 5.7 54 289-365 392-445 (528)
205 KOG2391 Vacuolar sorting prote 32.7 84 0.0018 33.6 5.5 6 241-246 249-254 (365)
206 KOG2590 RNA-binding protein LA 31.9 14 0.00031 40.7 -0.3 61 199-261 101-164 (448)
207 PF08544 GHMP_kinases_C: GHMP 31.7 1.8E+02 0.0039 23.3 6.5 45 302-368 36-80 (85)
208 PF00403 HMA: Heavy-metal-asso 30.8 2.4E+02 0.0052 21.4 6.9 32 290-321 1-32 (62)
209 KOG2252 CCAAT displacement pro 30.3 47 0.001 37.4 3.4 70 227-311 367-441 (558)
210 PF07292 NID: Nmi/IFP 35 domai 29.6 37 0.0008 29.3 1.9 25 285-309 49-73 (88)
211 PF03154 Atrophin-1: Atrophin- 29.0 1.1E+03 0.025 28.7 15.0 18 349-366 570-587 (982)
212 KOG4019 Calcineurin-mediated s 28.7 55 0.0012 32.0 3.1 72 290-384 12-89 (193)
213 KOG4410 5-formyltetrahydrofola 27.8 92 0.002 32.5 4.7 27 289-315 331-357 (396)
214 PRK14548 50S ribosomal protein 27.6 1.9E+02 0.0042 24.6 5.9 52 296-367 28-81 (84)
215 PF14893 PNMA: PNMA 27.4 52 0.0011 35.0 3.0 24 288-311 18-41 (331)
216 KOG0559 Dihydrolipoamide succi 27.1 2.2E+02 0.0047 30.9 7.4 18 253-270 294-311 (457)
217 KOG2675 Adenylate cyclase-asso 26.5 59 0.0013 35.7 3.2 8 313-320 370-377 (480)
218 PRK14950 DNA polymerase III su 26.0 2.6E+02 0.0056 31.9 8.5 16 303-318 523-539 (585)
219 PF05750 Rubella_Capsid: Rubel 25.9 1.1E+02 0.0023 30.0 4.6 18 502-519 99-116 (300)
220 PRK09752 adhesin; Provisional 25.2 69 0.0015 39.4 3.8 7 234-240 1032-1038(1250)
221 COG3254 Uncharacterized conser 24.5 1.7E+02 0.0037 26.1 5.2 44 302-365 26-69 (105)
222 cd04880 ACT_AAAH-PDT-like ACT 24.1 3.7E+02 0.0079 21.3 7.1 52 300-369 11-66 (75)
223 PF02714 DUF221: Domain of unk 23.8 87 0.0019 32.3 3.9 30 350-381 1-30 (325)
224 PRK06545 prephenate dehydrogen 22.8 2.3E+02 0.005 30.0 6.9 61 289-368 291-352 (359)
225 COG2608 CopZ Copper chaperone 22.7 2.7E+02 0.0059 22.4 5.8 56 289-367 4-60 (71)
226 KOG0119 Splicing factor 1/bran 22.0 2.2E+02 0.0048 32.0 6.5 120 234-369 95-226 (554)
227 cd04931 ACT_PAH ACT domain of 21.9 5.1E+02 0.011 22.1 7.6 50 301-368 27-79 (90)
228 COG1859 KptA RNA:NAD 2'-phosph 21.6 1.1E+02 0.0025 30.5 4.0 81 224-311 52-138 (211)
229 PF12993 DUF3877: Domain of un 21.4 1.7E+02 0.0036 28.4 4.9 17 298-314 107-123 (175)
230 COG1098 VacB Predicted RNA bin 21.1 1.8E+02 0.004 26.8 4.8 36 349-384 20-63 (129)
231 TIGR03636 L23_arch archaeal ri 20.8 3.4E+02 0.0073 22.8 6.0 56 292-367 17-74 (77)
232 CHL00030 rpl23 ribosomal prote 20.4 3.8E+02 0.0083 23.3 6.5 31 292-322 22-54 (93)
233 PF08156 NOP5NT: NOP5NT (NUC12 20.4 43 0.00094 27.2 0.6 22 347-368 44-65 (67)
No 1
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=100.00 E-value=1.3e-65 Score=526.94 Aligned_cols=369 Identities=38% Similarity=0.555 Sum_probs=268.8
Q ss_pred CCCCCCCCCCCCccccccc-cccccccccCCcccccc-------ccccCCCCCChHHHHHHHhccccccCCCcccccHHH
Q 009552 149 HRHQNHHHNNNNSHHQNNQ-YEDQQEGEVPGVKDKKE-------KKDHQHGGLNDESIQKVLNQVEYYFSDLNLATTDHL 220 (532)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~q-~~~~~~~~~~~~F~~~~-------~~~~~~~~~~~e~~~kI~kQvEyYFSD~NL~~D~fL 220 (532)
..++..++.++|+|.++.| ...+..+....+...++ ....++..+++|++.||++||||||||+||.+|+||
T Consensus 84 n~~~~~~~~~~R~~~~~~q~~~v~~pqe~e~~~~p~de~~~~~~~s~dsk~~lsedl~~kIv~QVEyyFSDenL~~d~fL 163 (484)
T KOG1855|consen 84 NSPSLSDKRPVRGHGETKQEGGVEPPQEKEQEVKPHDEQDTKEIDSLDSKLILSEDLAAKIVDQVEYYFSDENLLKDAFL 163 (484)
T ss_pred CCcccccceeccCCcchhhccCCCCccccccccCcchhcchhhcccccccccccHHHHHHHHHHhheeeccccccchHHH
Confidence 4578899999999999887 22232222222222222 223457789999999999999999999999999999
Q ss_pred HhhhccCCCCceecccccchhhHHHhhhcHHHHHHhhhcCCceEEeeccceeeccCCCcchhhhhccceeEEEecCCCcC
Q 009552 221 IRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDH 300 (532)
Q Consensus 221 ~~~i~kd~dG~Vpi~~i~sFkKmK~Lt~d~~~I~eALr~S~~LeVsedg~kVRR~~pl~e~d~~~~~~rtVyV~nLP~d~ 300 (532)
++.|+++.+|||+|++|++|+|||+||.|+.+|+.||+.|.+|+|++||+||||..||++.+.+++++|||+|+|||.|.
T Consensus 164 lkhvrrnkeGyVpv~~vaSFKKvK~LTrd~~~va~ALr~S~kL~vseDgkKVrRisPlp~~~~eel~srtivaenLP~Dh 243 (484)
T KOG1855|consen 164 LKHVRRNKEGYVPVKLVASFKKVKALTRDWKLVADALRKSSKLEVSEDGKKVRRISPLPEFDEEELPSRTIVAENLPLDH 243 (484)
T ss_pred HHHHhcCCCCceeeehhhhHHHHHHHhhhhHHHHHHHhhcceEEEccCCceeeecCCCCCccccccccceEEEecCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEE
Q 009552 301 CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVR 380 (532)
Q Consensus 301 t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~Ln~~~~~~~glrV~ 380 (532)
+.|+|.+||+.||.|++||||.|. .+|.+.|.......++++|-||||||++.+.|.||.+.||.+..|+.||+|+
T Consensus 244 ~~enl~kiFg~~G~IksIRIckPg----aip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e~~wr~glkvk 319 (484)
T KOG1855|consen 244 SYENLSKIFGTVGSIKSIRICKPG----AIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPEQNWRMGLKVK 319 (484)
T ss_pred HHHHHHHHhhcccceeeeeecCCC----CCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchhhhhhhcchhh
Confidence 999999999999999999999985 4566777666555666779999999999999999999999999999999999
Q ss_pred EeeecCCCCcc---cCCCCCCCCCCccccCcccccccccCCCCCCCCCccC-C---CccCCCCCCCCCCCCCCCCCCCCC
Q 009552 381 LMLRRGSKPAQ---VKGKKGPEGEWQCEEEDTSTSEQHLNEKQPDDSSQQS-D---GEEHNNEKEGGQRKGRNKGRGKGR 453 (532)
Q Consensus 381 l~~k~~~k~~~---~~~~kG~~~~~~~~e~~~~~s~~~~~~~~~~d~~~~~-d---~~~~~~~~~~g~r~GrgrGRGrgR 453 (532)
|++++..|-.. .|.+.|...+.....++..+.+....+.+.++..... + +.+.++...-++.+|+-.||++|
T Consensus 320 Ll~k~a~K~~~~~~~R~~~g~~~d~E~~~~~st~~e~np~~~q~~~~~~H~~~~~l~~d~Gn~~~~~~~~g~~~Gr~kG- 398 (484)
T KOG1855|consen 320 LLGKKAPKIQIAAPVRSRGGSFSDDETVPDDSTKLERNPSDPQPSYPRLHANENQLDQDRGNQNQEGGPWGFFKGRRKG- 398 (484)
T ss_pred hhhccCcccccccccccccccccCcccCcccccccccCCCCcCCCccccccccccCCCCCCCcccccCCCCcccccccc-
Confidence 99998876432 2223333333333334444444344444443211111 1 11212222223333333344333
Q ss_pred CCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCc--CCCCCCCCCCCCCCCCCCCCcccCCC-
Q 009552 454 GRNDRGQYHNNSHH-NNSHHNSNHNNHHNNRGH-----HVGTPPSNNMVNN--EQPMIGKQPPGPRMPDGTRGFAMGRG- 524 (532)
Q Consensus 454 GGrGRG~~~~~~~~-n~~~~~~~~~~~~~~~~h-----~~g~~~~~~~~~~--~~~~~~~~ppgprmpdgtrgf~~grg- 524 (532)
|||++.+.|--+ |++.++. .|+++ ..++.|+.++... .+.+.+.++||||||||||||+||||
T Consensus 399 --~gR~~p~an~~~~n~~ss~~------~Gn~~~~g~ss~~s~ps~sP~~~~k~~~~~~~q~~gPrmPdgtrGfsmGrg~ 470 (484)
T KOG1855|consen 399 --RGRSTPSANTAQANGHSSNG------GGNGMVHGISSLSSHPSYSPEVNPKRPRRASNQSPGPRMPDGTRGFSMGRGD 470 (484)
T ss_pred --cCCCCcchhhhhccCccCCC------CCCcccccccccccCCCCCcccccccccccccCCCCCCCCCCcCCccccccc
Confidence 344444332211 1111111 33332 4455555555444 22577889999999999999999999
Q ss_pred ---CCCccc
Q 009552 525 ---KPVAVN 530 (532)
Q Consensus 525 ---~p~~~~ 530 (532)
+|.++.
T Consensus 471 ~~~~P~~s~ 479 (484)
T KOG1855|consen 471 FAQKPDTSQ 479 (484)
T ss_pred CCCCCcccc
Confidence 776654
No 2
>cd08032 LARP_7 La RNA-binding domain of La-related protein 7. LARP7 is a component of the 7SK snRNP, a key factor in the regulation of RNA polymerase II transcription. 7SK functionality is dependent on the presence of LARP7, which is thought to stabilize the 7SK RNA by interacting with its 3' end. The release of 7SK RNA from P-TEFb/HEXIM/7SK complexes activates the cyclin-dependent kinase P-TEFb, which in turn phosphorylates the C-terminal domain of RNA pol II and mediates a transition into productive transcription elongation.
Probab=99.94 E-value=2.9e-27 Score=197.78 Aligned_cols=80 Identities=30% Similarity=0.552 Sum_probs=77.9
Q ss_pred hHHHHHHHhccccccCCCcccccHHHHhhhccCCCCceecccccchhhHHHhhhcHHHHHHhhhcCCceEEeeccceeec
Q 009552 195 DESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (532)
Q Consensus 195 ~e~~~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dG~Vpi~~i~sFkKmK~Lt~d~~~I~eALr~S~~LeVsedg~kVRR 274 (532)
.+++++|++||||||||+||.+|+||+++|.++.||||||++|++|+|||+|+.|.++|++||+.|+.|+|++||++|||
T Consensus 3 ~~l~~~I~~QvEfYFSd~NL~~D~fL~~~~~~~~dG~Vpl~~i~~F~rmk~lt~d~~~i~~Al~~S~~lev~ed~~~VRR 82 (82)
T cd08032 3 KQLLADIAKQVDFWFGDVNLHKDRFLREQIEKSRDGYIDISLLVSFNKMKKLTTDGKLIARALKNSSVVELNLEGTRIRR 82 (82)
T ss_pred HHHHHHHHHHHHhhcchhhcccCHHHHHHhcCCCCCCEeHHHHhcchHHHHHcCCHHHHHHHHhcCCEEEEcCCCCccCC
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999998
No 3
>cd08033 LARP_6 La RNA-binding domain of La-related protein 6. This domain is found in animal and plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.93 E-value=4.2e-27 Score=194.89 Aligned_cols=76 Identities=55% Similarity=0.873 Sum_probs=74.6
Q ss_pred HHHHhccccccCCCcccccHHHHhhhccCCCCceecccccchhhHHHhhhcHHHHHHhhhcCCceEEeeccceeec
Q 009552 199 QKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (532)
Q Consensus 199 ~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dG~Vpi~~i~sFkKmK~Lt~d~~~I~eALr~S~~LeVsedg~kVRR 274 (532)
++|++||||||||+||.+|+||+++|.+++||||||++|++|+|||+|+.|.++|++||+.|+.|+|++|+++|||
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fL~~~~~~~~dG~Vpl~~i~~F~rmk~l~~d~~~I~~Al~~S~~lev~~d~~~VRR 77 (77)
T cd08033 2 QKIVKQVEYYFSDENLLKDAFLLKHVRRNKEGYVPIKLIASFKKVKALTRDWRVVAAALRRSSKLVVSEDGKKVRR 77 (77)
T ss_pred hHHHhHHHhhcCHhhhccCHHHHHHhccCCCCcEehHHHhcchHHHHHcCCHHHHHHHHHhCCeEEEcCCCCccCC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999998
No 4
>cd08035 LARP_4 La RNA-binding domain of La-related protein 4. This domain is found in vertebrate La-related protein 4 (LARP4), also known as c-MPL binding protein. La-type domains often co-occur with RNA-recognition motifs (RRMs). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.93 E-value=1.1e-26 Score=190.47 Aligned_cols=73 Identities=34% Similarity=0.510 Sum_probs=70.6
Q ss_pred HHHHhccccccCCCcccccHHHHhhhccCCCCceecccccchhhHHHhhhcHHHHHHhhhcCCceEEeeccceee
Q 009552 199 QKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIK 273 (532)
Q Consensus 199 ~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dG~Vpi~~i~sFkKmK~Lt~d~~~I~eALr~S~~LeVsedg~kVR 273 (532)
++|++||||||||+||.+|.||+++| +.||||||++|++|+|||+|+.|.++|++||+.|++|+|+|||++||
T Consensus 2 e~i~~QvEyYFSd~NL~~D~fL~~~m--d~~G~Vpi~~iasF~rik~lt~d~~~I~~AL~~S~~levsedg~kVR 74 (75)
T cd08035 2 ECLKKQLEFCFSRENLSKDLYLISQM--DSDQFVPIWTVANMEGIKKLTTDMDLILDVLRSSPMVQVDETGEKVR 74 (75)
T ss_pred hHHHhhHHhhcCHhhcccCHHHHHhh--CcCCCEehHHHhccHHHHHhcCCHHHHHHHHHcCCeEEEcCCCCccC
Confidence 68999999999999999999999985 67999999999999999999999999999999999999999999997
No 5
>cd08036 LARP_5 La RNA-binding domain of La-related protein 5. This domain is found in vertebrate La-related protein 5 (LARP5). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.93 E-value=1.5e-26 Score=188.50 Aligned_cols=73 Identities=33% Similarity=0.499 Sum_probs=70.4
Q ss_pred HHHHhccccccCCCcccccHHHHhhhccCCCCceecccccchhhHHHhhhcHHHHHHhhhcCCceEEeeccceee
Q 009552 199 QKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIK 273 (532)
Q Consensus 199 ~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dG~Vpi~~i~sFkKmK~Lt~d~~~I~eALr~S~~LeVsedg~kVR 273 (532)
+.|++||||||||+||++|.||+++| |.||||||.+|++|+|||+|+.|.++|++||++|++|+|+++|++||
T Consensus 2 e~i~kQvEyYFS~~NL~~D~fLr~~m--d~~g~Vpi~~ia~F~rik~Lt~D~~lI~~aL~~S~~vevse~g~kVR 74 (75)
T cd08036 2 ELLKKTLEFCLSRENLASDMYLISQM--DSDQYVPIMTVANLDHIKKLSTDVDLIVDVLRSLPLVQVDEKGEKVR 74 (75)
T ss_pred hhhhcceeeeechhhccccHHHHHHh--ccCCCEehHHHhccHHHHHhcCCHHHHHHHHhhCCeEEECCCCCccC
Confidence 56999999999999999999999995 67999999999999999999999999999999999999999999997
No 6
>cd08029 LA_like_fungal La-motif domain of fungal proteins similar to the La autoantigen. This domain is found in fungal proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.92 E-value=4.8e-26 Score=188.32 Aligned_cols=75 Identities=40% Similarity=0.650 Sum_probs=72.4
Q ss_pred HHHHhccccccCCCcccccHHHHhhhccCCCCceecccccchhhHHHhhhcHHHHHHhhhcCCceEEeeccceeec
Q 009552 199 QKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (532)
Q Consensus 199 ~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dG~Vpi~~i~sFkKmK~Lt~d~~~I~eALr~S~~LeVsedg~kVRR 274 (532)
++|++||||||||+||.+|.||+++|.+++||||||++|++|+|||+|+.+ ++|++||+.|..|+|++||++|||
T Consensus 2 ~~I~~QvEfYFSd~NL~~D~fLr~~~~~~~~G~Vpl~~i~~F~rmk~l~~~-~~i~~Al~~S~~lev~~d~~~VRR 76 (76)
T cd08029 2 EEIRKQVEFYFSDSNLPTDKFLWTLTGGSNNGWVPIKTIASFKRMRRFQPL-EAVVEALRESELLEVSEDGENVRR 76 (76)
T ss_pred hHHHhhHHhhcCHhhhccCHHHHHHhccCCCCcEehHHHhCchHHHHcCCH-HHHHHHHHhCCeEEEeCCCCcccC
Confidence 579999999999999999999999999999999999999999999999865 999999999999999999999998
No 7
>smart00715 LA Domain in the RNA-binding Lupus La protein; unknown function.
Probab=99.92 E-value=7.2e-26 Score=189.20 Aligned_cols=80 Identities=49% Similarity=0.745 Sum_probs=77.1
Q ss_pred hHHHHHHHhccccccCCCcccccHHHHhhhccCCCCceecccccchhhHHHhhhcHHHHHHhhhcCCceEEeeccceeec
Q 009552 195 DESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (532)
Q Consensus 195 ~e~~~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dG~Vpi~~i~sFkKmK~Lt~d~~~I~eALr~S~~LeVsedg~kVRR 274 (532)
+++.++|++||||||||+||.+|.||+++|.++ +|||||++|++|+|||+|+.|.++|++||+.|..|+|++|+++|||
T Consensus 1 ~~~~~~i~~QvEfYFSd~NL~~D~fLr~~~~~~-~g~Vpl~~i~~F~r~k~l~~d~~~i~~Al~~S~~lel~~d~~~VRR 79 (80)
T smart00715 1 EELKQKIKKQVEYYFSDENLPRDKFLRKKMDKN-DGYVPISTIASFKRVKSLTTDVNLIVEALRSSPKLEVSEDGLKVRR 79 (80)
T ss_pred ChHHHHHHHHHHHHcCHhhhhhCHHHHHHhccC-CCCEEhHHHhCchhHHHHcCCHHHHHHHHHhCCeEEEcCCCCeeCc
Confidence 468899999999999999999999999999887 9999999999999999999999999999999999999999999998
Q ss_pred c
Q 009552 275 Q 275 (532)
Q Consensus 275 ~ 275 (532)
.
T Consensus 80 ~ 80 (80)
T smart00715 80 R 80 (80)
T ss_pred C
Confidence 4
No 8
>cd08028 LARP_3 La RNA-binding domain of La-related protein 3. This domain is found at the N-terminus of the La autoantigen and similar proteins, and co-occurs with an RNA-recognition motif (RRM). Together these domains function to bind primary transcripts of RNA polymerase III at their 3' terminus and protect them from exonucleolytic degradation. Binding is specific for the 3'-terminal UUU-OH motif. The La autoantigen is also called Lupus La protein, LARP3, or Sjoegren syndrome type B antigen (SS-B).
Probab=99.92 E-value=1e-25 Score=188.71 Aligned_cols=79 Identities=38% Similarity=0.668 Sum_probs=76.0
Q ss_pred hHHHHHHHhccccccCCCcccccHHHHhhhccCCCCceecccccchhhHHHhhhcHHHHHHhhhcCC--ceEEeecccee
Q 009552 195 DESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSS--KLVVSEDGKKI 272 (532)
Q Consensus 195 ~e~~~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dG~Vpi~~i~sFkKmK~Lt~d~~~I~eALr~S~--~LeVsedg~kV 272 (532)
+++..+|++||||||||+||.+|+||+++|.++ +|||||++|++|+|||+|+.|.++|++||+.|+ +|+|++||++|
T Consensus 2 ~~l~~~I~~QvEfYFSd~NL~~D~fLr~~m~~~-~G~Vpl~~i~~F~rmk~l~~d~~~i~~Al~~S~~~~lev~~d~~~V 80 (82)
T cd08028 2 DDLEKKIIRQIEYYFGDFNLPRDKFLKEQIKED-DGWVPMEVMLKFNRLKSLSSDPEVIAKALKKSKSGLIEVSEDKTKI 80 (82)
T ss_pred hHHHHHHHHHHHhhcCHhhhccCHHHHHHHhcc-CCCEEhHHHhCChhHHHhcCCHHHHHHHHHhCCCCEEEEcCCCCcc
Confidence 578999999999999999999999999999765 999999999999999999999999999999999 99999999999
Q ss_pred ec
Q 009552 273 KR 274 (532)
Q Consensus 273 RR 274 (532)
||
T Consensus 81 RR 82 (82)
T cd08028 81 RR 82 (82)
T ss_pred CC
Confidence 98
No 9
>cd08030 LA_like_plant La-motif domain of plant proteins similar to the La autoantigen. This domain is found in plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.92 E-value=1.2e-25 Score=191.02 Aligned_cols=77 Identities=42% Similarity=0.708 Sum_probs=73.6
Q ss_pred HHHHHhccccccCCCcccccHHHHhhhccCCCCceecccccchhhHHHhhhc------------HHHHHHhhhcCCceEE
Q 009552 198 IQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISS------------HSHLASVLRKSSKLVV 265 (532)
Q Consensus 198 ~~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dG~Vpi~~i~sFkKmK~Lt~d------------~~~I~eALr~S~~LeV 265 (532)
.++|++||||||||+||.+|+||+++|.+++||||+|++|++|+|||+|+.+ .++|++||+.|++|+|
T Consensus 2 ~~~i~~QvEfYFSd~NL~~D~fL~~~~~~~~dG~V~i~~i~~F~rmk~l~~~~~~~~~~~~~~~~~~I~~ALk~S~~lev 81 (90)
T cd08030 2 KEKVLRQVEFYFSDSNLPRDDFLLEEVEEDPDGMVSLALICSFSRMRSLLGLGGGKPEDVPEDTLKAVAEALRTSTLLKV 81 (90)
T ss_pred hHHHHHHHHcccchhhcccCHHHHHHhccCCCCCEehHHHhcChHHHHHhhcccccccccchhHHHHHHHHHccCCEEEE
Confidence 5789999999999999999999999999999999999999999999999853 6899999999999999
Q ss_pred eeccceeec
Q 009552 266 SEDGKKIKR 274 (532)
Q Consensus 266 sedg~kVRR 274 (532)
++||++|||
T Consensus 82 seD~~~VRR 90 (90)
T cd08030 82 SEDGKRVGR 90 (90)
T ss_pred cCCCCccCC
Confidence 999999998
No 10
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=99.91 E-value=1.2e-24 Score=230.23 Aligned_cols=169 Identities=27% Similarity=0.383 Sum_probs=141.3
Q ss_pred cCCCCCChHHHHHHHhccccccCCCcccccHHHHhhhccCCCCceecccccchhhHHHhhhcHHHHHHhhhcCCceEEee
Q 009552 188 HQHGGLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSE 267 (532)
Q Consensus 188 ~~~~~~~~e~~~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dG~Vpi~~i~sFkKmK~Lt~d~~~I~eALr~S~~LeVse 267 (532)
+....++.++++.|++|||||||.+||..|.||+.+ ||.|.||||.+|+.|.+|++|++|+++|+|+||.|..|+|+|
T Consensus 87 ~~~~Pls~~~kq~lk~qlEy~fSreNlssD~YL~sQ--MDSDqyVPI~tva~~~~i~klttDvdLI~Evlresp~VqvDe 164 (684)
T KOG2591|consen 87 PPSPPLSRDLKQLLKKQLEYYFSRENLSSDRYLISQ--MDSDQYVPINTVANFPEIMKLTTDVDLIVEVLRESPNVQVDE 164 (684)
T ss_pred CCCCccchhHHHHHHHHHHHhhccccccchhhhhhh--cccccccchhhhccchhhhhhccchHHHHHHHhcCCCceecc
Confidence 456677889999999999999999999999999998 688999999999999999999999999999999999999999
Q ss_pred ccceeeccCCCcchhhhhccceeEEEecCCCcCcHHHHHHHhhh--cCCeeEEEEeCCCCCCCCCCCCCCcccccCcccc
Q 009552 268 DGKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSA--VGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFS 345 (532)
Q Consensus 268 dg~kVRR~~pl~e~d~~~~~~rtVyV~nLP~d~t~edL~elFs~--fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~ 345 (532)
+|.|||-.. ++|+|+++.||+.+-+|+|+.||+. |=.+.+ ++|+
T Consensus 165 kgekVrp~~----------kRcIvilREIpettp~e~Vk~lf~~encPk~is------------------------cefa 210 (684)
T KOG2591|consen 165 KGEKVRPNH----------KRCIVILREIPETTPIEVVKALFKGENCPKVIS------------------------CEFA 210 (684)
T ss_pred CccccccCc----------ceeEEEEeecCCCChHHHHHHHhccCCCCCcee------------------------eeee
Confidence 999998765 6789999999999999999999986 323322 3444
Q ss_pred cccEEEEEeCCHHHHHHHHHHHcCCCCCCCc--e--EEEEeeecCCCCccc
Q 009552 346 NKLHAFVEYESVELAEKAIAELNDEGNWRSG--L--RVRLMLRRGSKPAQV 392 (532)
Q Consensus 346 ~KG~AFVEFet~E~AekAv~~Ln~~~~~~~g--l--rV~l~~k~~~k~~~~ 392 (532)
....|||+|++.+||++|++.|..+.....| | ||+.+.....|.+.+
T Consensus 211 ~N~nWyITfesd~DAQqAykylreevk~fqgKpImARIKaintf~pkngyr 261 (684)
T KOG2591|consen 211 HNDNWYITFESDTDAQQAYKYLREEVKTFQGKPIMARIKAINTFFPKNGYR 261 (684)
T ss_pred ecCceEEEeecchhHHHHHHHHHHHHHhhcCcchhhhhhhhhcccCCCCCC
Confidence 4567999999999999999999876554443 3 333344555554443
No 11
>cd08031 LARP_4_5_like La RNA-binding domain of proteins similar to La-related proteins 4 and 5. This domain is found in proteins similar to La-related proteins 4 and 5 (LARP4, LARP5). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.91 E-value=4.7e-25 Score=181.82 Aligned_cols=74 Identities=38% Similarity=0.624 Sum_probs=70.8
Q ss_pred HHHHhccccccCCCcccccHHHHhhhccCCCCceecccccchhhHHHhhhcHHHHHHhhhcCCceEEeeccceeec
Q 009552 199 QKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (532)
Q Consensus 199 ~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dG~Vpi~~i~sFkKmK~Lt~d~~~I~eALr~S~~LeVsedg~kVRR 274 (532)
++|++||||||||+||.+|.||+++| +.||||+|++|++|+|||+|+.|.++|++||+.|+.|+|++|+++||.
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fL~~~m--~~dG~Vpl~~i~~F~rmk~lt~d~~~i~~Al~~S~~lev~ed~~~VR~ 75 (75)
T cd08031 2 ELLKRQLEYYFSRENLANDAYLLSQM--DSDQYVPIWTIANFNKIKKLTTDIDLIVEALRESPNVQVDEKGEKVRP 75 (75)
T ss_pred hHHHHHHHHHcCHhhhccCHHHHHHh--CCCCCEEHHHHhCchhHHHHcCCHHHHHHHHHhCCeEEEcCCCCccCc
Confidence 68999999999999999999999986 578999999999999999999999999999999999999999999973
No 12
>cd08037 LARP_1 La RNA-binding domain of La-related protein 1. This domain is found in vertebrate La-related protein 1 (LARP1). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.89 E-value=2.4e-24 Score=176.18 Aligned_cols=72 Identities=32% Similarity=0.556 Sum_probs=67.7
Q ss_pred HHHHhccccccCCCcccccHHHHhhhccCCCCceecccccchhhHHHhhhcHHHHHHhhhcCCceEEeeccceeec
Q 009552 199 QKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (532)
Q Consensus 199 ~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dG~Vpi~~i~sFkKmK~Lt~d~~~I~eALr~S~~LeVsedg~kVRR 274 (532)
++|++||||||||+||.+|.||+++| ++||||||++|++|+|||+|+.|.++|++||+.|+.|||+++ +|||
T Consensus 2 ~~I~~QvEyYFSd~NL~~D~fLr~~m--d~dG~Vpi~~ia~F~rmk~Lt~d~~~I~~Al~~S~~vev~~~--~~r~ 73 (73)
T cd08037 2 DYIKRQIEYYFSVDNLERDFFLRRKM--DEDGFLPVTLIASFHRVQALTTDISLIIKALKDSKVVEIIDM--KIRR 73 (73)
T ss_pred hHHHHHHHHhccHhhhccCHHHHHHh--ccCCCEeHHHHhcchHHHHhcCCHHHHHHHHHcCCeEEEecc--hhcC
Confidence 57999999999999999999999986 679999999999999999999999999999999999999988 5664
No 13
>cd08038 LARP_2 La RNA-binding domain of La-related protein 2. This domain is found in vertebrate La-related protein 2 (LARP2). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.89 E-value=4e-24 Score=174.82 Aligned_cols=72 Identities=32% Similarity=0.588 Sum_probs=67.6
Q ss_pred HHHHhccccccCCCcccccHHHHhhhccCCCCceecccccchhhHHHhhhcHHHHHHhhhcCCceEEeeccceeec
Q 009552 199 QKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (532)
Q Consensus 199 ~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dG~Vpi~~i~sFkKmK~Lt~d~~~I~eALr~S~~LeVsedg~kVRR 274 (532)
++|++||||||||+||.+|.||+++| +.+|||||++|++|+|||+|+.|.++|++||+.|+.|+|++| +|||
T Consensus 2 e~I~~QvEfYFSd~NL~~D~fLr~~m--~~~G~Vpl~~ia~F~rmk~lt~d~~~I~~Al~~S~~ve~~~~--~~r~ 73 (73)
T cd08038 2 EYIKRQIEYYFSTENLERDFFLRRKM--DLQGFLPISLIAGFYRVQALTTNVDLILEALKDSTEVEIVDQ--KIRR 73 (73)
T ss_pred hHHHhhHHhhcchhhhccCHHHHHHh--CCCCCEeHHHHhcchHHHHhcCCHHHHHHHHHcCCeEEEeCC--cccC
Confidence 68999999999999999999999986 679999999999999999999999999999999999999988 4554
No 14
>cd08034 LARP_1_2 La RNA-binding domain proteins similar to La-related proteins 1 and 2. This domain is found in proteins similar to vertebrate La-related proteins 1 and 2 (LARP1, LARP2). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.89 E-value=5.8e-24 Score=174.35 Aligned_cols=72 Identities=33% Similarity=0.601 Sum_probs=68.1
Q ss_pred HHHHhccccccCCCcccccHHHHhhhccCCCCceecccccchhhHHHhhhcHHHHHHhhhcCCceEEeeccceeec
Q 009552 199 QKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (532)
Q Consensus 199 ~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dG~Vpi~~i~sFkKmK~Lt~d~~~I~eALr~S~~LeVsedg~kVRR 274 (532)
++|++||||||||+||.+|.||+++| +++|||||++|++|+|||+|+.|.++|++||+.|+.|+|++ .+|||
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fLr~~m--~~~G~Vpl~~i~~F~rmk~l~~d~~~i~~Al~~S~~lev~e--~kvR~ 73 (73)
T cd08034 2 EYIKKQIEYYFSVDNLEKDFFLRRKM--DPEGYLPIALIASFHRVQALTTDVNLILEALKDSTVVELVD--EKVRC 73 (73)
T ss_pred hHHHhhHHhhcCHhhhccCHHHHHHc--CCCCCEeHHHHhccHHHHHHcCCHHHHHHHHHcCCeEEEec--CeecC
Confidence 68999999999999999999999985 68999999999999999999999999999999999999999 46775
No 15
>cd07323 LAM LA motif RNA-binding domain. This domain is found at the N-terminus of La RNA-binding proteins as well as in other related proteins. Typically, the domain co-occurs with an RNA-recognition motif (RRM), and together these domains function to bind primary transcripts of RNA polymerase III in the La autoantigen (Lupus La protein, LARP3, or Sjoegren syndrome type B antigen, SS-B). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.88 E-value=1.3e-23 Score=173.85 Aligned_cols=74 Identities=43% Similarity=0.723 Sum_probs=71.8
Q ss_pred HHHHhccccccCCCcccccHHHHhhhccCCCCceecccccchhhHHHhhhcHHHHHHhhhcCCceEEeeccceeec
Q 009552 199 QKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (532)
Q Consensus 199 ~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dG~Vpi~~i~sFkKmK~Lt~d~~~I~eALr~S~~LeVsedg~kVRR 274 (532)
++|++||||||||+||.+|.||+++| +++|||||++|++|+|||+|+.|.++|++||+.|..|+|++++++|||
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fL~~~~--~~~g~Vpl~~i~~F~r~k~l~~~~~~i~~Al~~s~~lel~~~~~~Vrr 75 (75)
T cd07323 2 EKIKKQVEYYFSDENLCKDRFLRSLM--DDDGWVPLSLLASFNRVKKLTTDVELILEALRDSSVVEVSEDGTKVRR 75 (75)
T ss_pred hHHHhhhHhccCHhhhCcCHHHHHhc--CCCCCEEHHHHhCchHHHHHcCCHHHHHHHHHhCCeEEEeCCCCccCC
Confidence 57999999999999999999999997 889999999999999999999999999999999999999999999987
No 16
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=99.85 E-value=5.8e-22 Score=185.10 Aligned_cols=155 Identities=26% Similarity=0.347 Sum_probs=130.9
Q ss_pred ChHHHHHHHhccccccCCCcccccHHHHhhhccCCCCceecccccchhhHHHhhhcHHHHHHhhhcCC--ceEEeeccce
Q 009552 194 NDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSS--KLVVSEDGKK 271 (532)
Q Consensus 194 ~~e~~~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dG~Vpi~~i~sFkKmK~Lt~d~~~I~eALr~S~--~LeVsedg~k 271 (532)
..++.++|+.||||||+|.||++|+||+.+|-+..+|||||.+++.|+|+..|++|...|++||++|. ++++++|.++
T Consensus 10 ~a~lE~kii~qleyy~Gd~nl~rdkfl~eqi~k~~~gwvpi~i~i~FnRla~lttD~~~Iv~al~ksk~~l~eisedk~k 89 (205)
T KOG4213|consen 10 MAALEAKIIHQLEYYFGDLNLPRDKFLREQIHKLDDGWVPIEIMIKFNRLASLTTDFNVIVEALSKSKAELMEISEDKTK 89 (205)
T ss_pred hhHHHHhhhhhhhhhhcccCchHHHHHHHHhhhhccCCccchhhhhhhhhhhccccHHHHHHHHhhCHHhhhhhhhchhh
Confidence 56788889999999999999999999999998888999999999999999999999999999999885 7899999999
Q ss_pred eeccC--CCcc---hhhhhccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCccccc
Q 009552 272 IKRQN--PLTE---SDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSN 346 (532)
Q Consensus 272 VRR~~--pl~e---~d~~~~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~ 346 (532)
+||.. |+++ .....+..|+||.+ +.+...++|..+-+ |.+.+|.+.+-.. .....
T Consensus 90 ~rr~~skplpEvt~e~~~~~~~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~----------------k~~~f 149 (205)
T KOG4213|consen 90 IRRSPSKPLPEVTDEYKEGIKERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGN----------------KAHPF 149 (205)
T ss_pred hhcCcCCCCccccHHHHHHHHHhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCC----------------CCCCC
Confidence 99975 5665 34566788999988 67777788888777 8999998854211 10123
Q ss_pred ccEEEEEeCCHHHHHHHHHHHc
Q 009552 347 KLHAFVEYESVELAEKAIAELN 368 (532)
Q Consensus 347 KG~AFVEFet~E~AekAv~~Ln 368 (532)
+|..||.|.+.+.|..+++.-.
T Consensus 150 kGsvkv~f~tk~qa~a~~~~~e 171 (205)
T KOG4213|consen 150 KGSVKVTFQTKEQAFANDDTHE 171 (205)
T ss_pred CCceEEEeecHHHHHhhhhhhh
Confidence 8899999999999998887543
No 17
>PF05383 La: La domain; InterPro: IPR006630 Human Ro ribonucleoproteins (RNPs) are composed of one of the four small Y RNAs and at least two proteins, Ro60 and La. The La protein is a 47 kDa polypeptide that frequently acts as an autoantigen in systemic lupus erythematosus and Sjogren's syndrome []. In the nucleus, La acts as a RNA polymerase III (RNAP III) transcription factor, while in the cytoplasm, La acts as a translation factor []. In the nucleus, La binds to the 3'UTR of nascent RNAP III transcripts to assist in folding and maturation []. In the cytoplasm, La recognises specific classes of mRNAs that contain a 5'-terminal oligopyrimidine (5'TOP) motif known to control protein synthesis []. The specific recognition is mediated by the N-terminal domain of La, which comprises a La motif and a RNA recognition motif (RRM). The La motif adopts an alpha/beta fold that comprises a winged-helix motif []. Homologous La domain-containing proteins have been identified in a wide range of organisms except Archaea, bacteria and viruses [].; PDB: 1S29_A 1YTY_B 2VOO_B 1S7A_A 2VOP_A 2VON_B 1ZH5_B 2VOD_A 2CQK_A.
Probab=99.83 E-value=1.7e-21 Score=154.88 Aligned_cols=60 Identities=40% Similarity=0.678 Sum_probs=55.3
Q ss_pred HHhccccccCCCcccccHHHHhhhccCCCCceecccccchhhHHHhh-hcHHHHHHhhhcC
Q 009552 201 VLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAII-SSHSHLASVLRKS 260 (532)
Q Consensus 201 I~kQvEyYFSD~NL~~D~fL~~~i~kd~dG~Vpi~~i~sFkKmK~Lt-~d~~~I~eALr~S 260 (532)
|++||||||||+||.+|+||+++|.+++||||||++|++|+|||+|+ .|.++|++||++|
T Consensus 1 I~~QvEfYFSd~NL~~D~fL~~~~~~~~~g~Vpi~~i~~F~r~k~l~~~~~~~I~~al~~S 61 (61)
T PF05383_consen 1 IKKQVEFYFSDENLPRDKFLRSQMDSNPDGWVPISTILSFNRMKALTNTDIELIVDALRDS 61 (61)
T ss_dssp HHHHHHHHTSHHHHCC-HHHHHHHCTTTTTBEEHHHHTTSHHHHHH--S-HHHHHHHHHTS
T ss_pred ChhHHHHhcCHHHhCcCHHHHHHHHhcCCCcEeHHHHHchHHHHHHhcCCHHHHHHHHHcC
Confidence 78999999999999999999999999899999999999999999999 8999999999986
No 18
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.65 E-value=2.8e-15 Score=157.30 Aligned_cols=80 Identities=20% Similarity=0.235 Sum_probs=66.7
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
...++|||.|||.++|+++|+++|++||+|+.|+|.+++.+ ++ .|+||||+|++.|+|++||+
T Consensus 191 ~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~t----------g~-------~kG~aFV~F~~~e~A~~Ai~ 253 (346)
T TIGR01659 191 IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLT----------GT-------PRGVAFVRFNKREEAQEAIS 253 (346)
T ss_pred cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCC----------Cc-------cceEEEEEECCHHHHHHHHH
Confidence 45678999999999999999999999999999999876432 12 37899999999999999999
Q ss_pred HHcCCCCCCCceEEEEe
Q 009552 366 ELNDEGNWRSGLRVRLM 382 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l~ 382 (532)
.||+..+.+..+.|.+.
T Consensus 254 ~lng~~~~g~~~~l~V~ 270 (346)
T TIGR01659 254 ALNNVIPEGGSQPLTVR 270 (346)
T ss_pred HhCCCccCCCceeEEEE
Confidence 99998877654444443
No 19
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.63 E-value=2.7e-15 Score=138.96 Aligned_cols=81 Identities=17% Similarity=0.213 Sum_probs=69.6
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
..++|||+||++++|+++|+++|++||.|+.|+|+.+..+ ++ .||||||+|++.|+|++||+.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~t----------g~-------~kGfaFV~F~~~e~A~~Al~~ 95 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRET----------GR-------SRGFGFVNFNDEGAATAAISE 95 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCC----------CC-------cceEEEEEECCHHHHHHHHHH
Confidence 4568999999999999999999999999999999876432 11 378999999999999999999
Q ss_pred HcCCCCCCCceEEEEeee
Q 009552 367 LNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 367 Ln~~~~~~~glrV~l~~k 384 (532)
||+..+.++.|+|.+...
T Consensus 96 lng~~i~Gr~l~V~~a~~ 113 (144)
T PLN03134 96 MDGKELNGRHIRVNPAND 113 (144)
T ss_pred cCCCEECCEEEEEEeCCc
Confidence 999888887777776643
No 20
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.52 E-value=1.7e-13 Score=151.57 Aligned_cols=75 Identities=29% Similarity=0.331 Sum_probs=67.5
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhc--CCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAV--GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~f--G~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv 364 (532)
..++|||+||++++|+++|+++|++| |+|+.|+++ ++||||+|++.|+|++|+
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~-------------------------rgfAFVeF~s~e~A~kAi 286 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI-------------------------RDYAFVHFEDREDAVKAM 286 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee-------------------------cCeEEEEeCCHHHHHHHH
Confidence 35799999999999999999999999 999999874 459999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeeecC
Q 009552 365 AELNDEGNWRSGLRVRLMLRRG 386 (532)
Q Consensus 365 ~~Ln~~~~~~~glrV~l~~k~~ 386 (532)
++||+..++++.|+|.+.....
T Consensus 287 ~~lnG~~i~Gr~I~V~~Akp~~ 308 (578)
T TIGR01648 287 DELNGKELEGSEIEVTLAKPVD 308 (578)
T ss_pred HHhCCCEECCEEEEEEEccCCC
Confidence 9999999999988888875543
No 21
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=4.9e-15 Score=153.33 Aligned_cols=164 Identities=27% Similarity=0.336 Sum_probs=136.2
Q ss_pred ccccCCCCCChHHHHH---------------HHhccccccC-----CCcccccHHHHhhhccC--CCCceecccccchhh
Q 009552 185 KKDHQHGGLNDESIQK---------------VLNQVEYYFS-----DLNLATTDHLIRFILKD--PEGYVPISTVASFKK 242 (532)
Q Consensus 185 ~~~~~~~~~~~e~~~k---------------I~kQvEyYFS-----D~NL~~D~fL~~~i~kd--~dG~Vpi~~i~sFkK 242 (532)
.....+.+++++.+.+ +..|+||||| |.|+.+|+||+..-.+. .+|||+|.++++|++
T Consensus 44 ~t~~~~eE~~~~sksKk~d~~ps~l~~~~kw~l~qvE~~fS~s~~~d~n~~~dk~~ktta~Kn~~~~kwVpIkt~~tfn~ 123 (438)
T COG5193 44 NTVIPVEELTESSKSKKEDKNPSKLTSNTKWTLKQVEFYFSGSKDTDSNFPKDKFLKTTAPKNKKRDKWVPIKTIATFNR 123 (438)
T ss_pred CCCcchhhccchhhhcccccCccccccCccccccceeEEeeccccccccccchhhhccccccccCCCCceeeeeeeeecc
Confidence 4445666788888888 9999999999 99999999999876443 599999999999999
Q ss_pred HHHhhhcHHHHHHhhhcC---CceEEeeccceeeccCCCcchhhh--hccceeEEEecCCCcCcH--------HHHHHHh
Q 009552 243 IKAIISSHSHLASVLRKS---SKLVVSEDGKKIKRQNPLTESDLE--ELQSRIVVAENLPEDHCH--------QNLMKIF 309 (532)
Q Consensus 243 mK~Lt~d~~~I~eALr~S---~~LeVsedg~kVRR~~pl~e~d~~--~~~~rtVyV~nLP~d~t~--------edL~elF 309 (532)
|+.++...+.+..+|++| .+++++.+|.+++|..++.....+ ....|.+|+.+|..+.+. ++|+..|
T Consensus 124 ~k~~gs~~~~v~~a~rks~~~rv~e~Sssgsn~~r~~k~~s~n~~s~~~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~ 203 (438)
T COG5193 124 MKNSGSPVSAVSGALRKSLDARVLEVSSSGSNKNRTEKLISNNNKSTSQMQRDVYQNGFGKEDVNNASRPEQQEDLEIQF 203 (438)
T ss_pred ccccCCchhhhhhhhhcCcccceeeeccccccccccchhhhhhhhhhhhHhhhHHhhcCCcccccccccchhhhhHHhhC
Confidence 999999999999999999 789999999999998877655444 456789999999876544 4999999
Q ss_pred hh--cCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 310 SA--VGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 310 s~--fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
.. .+.+..|+++++. +. ..| +|..||+|...+.|++++.
T Consensus 204 p~h~h~~~~~i~~rrd~----------~n-----kn~--~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 204 PPHYHAPPSQIRNRRDW----------LN-----KNF--RGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred CCcccCChhhccchhhh----------hh-----ccc--cCcccccccChHHHHHHhc
Confidence 99 6788888887642 11 122 6789999999999999873
No 22
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=2.3e-13 Score=121.89 Aligned_cols=97 Identities=23% Similarity=0.205 Sum_probs=80.0
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
.+++||||+||..-+++|.|-+||++||+|+.|-|-.++. .| ...|||||||-+.++|+.||+
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~-----------kk------tpCGFCFVeyy~~~dA~~Alr 96 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRF-----------KK------TPCGFCFVEYYSRDDAEDALR 96 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccC-----------Cc------CccceEEEEEecchhHHHHHH
Confidence 4678999999999999999999999999999999976643 22 237899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeecCCCCcccCCCCCCC
Q 009552 366 ELNDEGNWRSGLRVRLMLRRGSKPAQVKGKKGPE 399 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~k~~~k~~~~~~~kG~~ 399 (532)
.+|+..++.+.|+|++..........++++.|+.
T Consensus 97 yisgtrLddr~ir~D~D~GF~eGRQyGRG~sGGq 130 (153)
T KOG0121|consen 97 YISGTRLDDRPIRIDWDAGFVEGRQYGRGKSGGQ 130 (153)
T ss_pred HhccCcccccceeeeccccchhhhhhcCCCCCCe
Confidence 9999999999999998766554433355555443
No 23
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.41 E-value=6.9e-13 Score=137.82 Aligned_cols=81 Identities=22% Similarity=0.225 Sum_probs=71.7
Q ss_pred ceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHH
Q 009552 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (532)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~L 367 (532)
.++|||+|||.++++++|+++|++||.|.+|+|+++..++ ..||||||+|++.++|.+||+.|
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~-----------------~skG~aFV~F~~~~~A~~Ai~~l 331 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTN-----------------QCKGYGFVSMTNYDEAAMAILSL 331 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCC-----------------CccceEEEEECCHHHHHHHHHHh
Confidence 3479999999999999999999999999999999875322 23899999999999999999999
Q ss_pred cCCCCCCCceEEEEeeec
Q 009552 368 NDEGNWRSGLRVRLMLRR 385 (532)
Q Consensus 368 n~~~~~~~glrV~l~~k~ 385 (532)
|+..++++.|+|.+...+
T Consensus 332 nG~~~~gr~i~V~~~~~~ 349 (352)
T TIGR01661 332 NGYTLGNRVLQVSFKTNK 349 (352)
T ss_pred CCCEECCeEEEEEEccCC
Confidence 999999999999887654
No 24
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.38 E-value=1.4e-12 Score=137.09 Aligned_cols=80 Identities=24% Similarity=0.339 Sum_probs=70.3
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
..++|||+|||+++|+++|+++|+.||.|+.|+|+++..++ + +||||||+|+++|+|++||++
T Consensus 106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg----------~-------srGyaFVeF~~~e~A~~Ai~~ 168 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTG----------Y-------SFGYAFVDFGSEADSQRAIKN 168 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCC----------c-------cCcEEEEEEccHHHHHHHHHH
Confidence 56899999999999999999999999999999998764321 1 378999999999999999999
Q ss_pred HcCCCCCCCceEEEEee
Q 009552 367 LNDEGNWRSGLRVRLML 383 (532)
Q Consensus 367 Ln~~~~~~~glrV~l~~ 383 (532)
||+..++.+.|+|.+..
T Consensus 169 LnG~~l~gr~i~V~~a~ 185 (346)
T TIGR01659 169 LNGITVRNKRLKVSYAR 185 (346)
T ss_pred cCCCccCCceeeeeccc
Confidence 99999988888887653
No 25
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.36 E-value=1.6e-12 Score=102.94 Aligned_cols=69 Identities=36% Similarity=0.454 Sum_probs=58.7
Q ss_pred EEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHHcCC
Q 009552 291 VVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDE 370 (532)
Q Consensus 291 VyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~Ln~~ 370 (532)
|||+|||.++|+++|+++|+.||.|..+.+..+. .+ ..+++|||+|++.++|++|++.|++.
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~-----------~~-------~~~~~a~V~F~~~~~a~~a~~~l~g~ 62 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNS-----------SG-------KSKGYAFVEFESEEDAEKALEELNGK 62 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEET-----------TS-------SEEEEEEEEESSHHHHHHHHHHHTTE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccc-----------cc-------cccceEEEEEcCHHHHHHHHHHcCCC
Confidence 7999999999999999999999999999997531 01 13789999999999999999999987
Q ss_pred CCCCCce
Q 009552 371 GNWRSGL 377 (532)
Q Consensus 371 ~~~~~gl 377 (532)
.+.++.|
T Consensus 63 ~~~~~~i 69 (70)
T PF00076_consen 63 KINGRKI 69 (70)
T ss_dssp EETTEEE
T ss_pred EECccCc
Confidence 6665544
No 26
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.35 E-value=2.1e-12 Score=134.26 Aligned_cols=79 Identities=20% Similarity=0.340 Sum_probs=69.3
Q ss_pred ceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHH
Q 009552 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (532)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~L 367 (532)
..+|||+|||.++|+++|+++|+.||+|..|+|++++.++ + ++|||||+|++.++|++||+.|
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g----------~-------s~g~afV~f~~~~~A~~Ai~~l 65 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTG----------Q-------SLGYGFVNYVRPEDAEKAVNSL 65 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCC----------c-------cceEEEEEECcHHHHHHHHhhc
Confidence 4699999999999999999999999999999999864321 1 3789999999999999999999
Q ss_pred cCCCCCCCceEEEEee
Q 009552 368 NDEGNWRSGLRVRLML 383 (532)
Q Consensus 368 n~~~~~~~glrV~l~~ 383 (532)
|+..+.++.|+|.+..
T Consensus 66 ~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 66 NGLRLQNKTIKVSYAR 81 (352)
T ss_pred ccEEECCeeEEEEeec
Confidence 9988888888887653
No 27
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.29 E-value=7.6e-12 Score=138.79 Aligned_cols=82 Identities=22% Similarity=0.308 Sum_probs=71.7
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
...++|||+||+.++|+++|+++|+.||+|++|+|+.+.+ + .+||||||+|++.|+|++|++
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~-----------g-------~~~g~gfV~f~~~~~A~~A~~ 344 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEK-----------G-------VSRGFGFVCFSNPEEANRAVT 344 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCC-----------C-------CcCCeEEEEeCCHHHHHHHHH
Confidence 3567899999999999999999999999999999987521 1 137899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeec
Q 009552 366 ELNDEGNWRSGLRVRLMLRR 385 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~k~ 385 (532)
+||+..+.++.|+|.++.++
T Consensus 345 ~~~g~~~~gk~l~V~~a~~k 364 (562)
T TIGR01628 345 EMHGRMLGGKPLYVALAQRK 364 (562)
T ss_pred HhcCCeeCCceeEEEeccCc
Confidence 99999998998999887653
No 28
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.29 E-value=1.1e-11 Score=124.27 Aligned_cols=76 Identities=17% Similarity=0.217 Sum_probs=67.1
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
..++|||+||+.++|+++|+++|+.||+|..|+|++++. .+|||||+|++.++|+.||.
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~--------------------~~GfAFVtF~d~eaAe~All- 61 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE--------------------RSQIAYVTFKDPQGAETALL- 61 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC--------------------CCCEEEEEeCcHHHHHHHHH-
Confidence 357999999999999999999999999999999976531 15799999999999999996
Q ss_pred HcCCCCCCCceEEEEee
Q 009552 367 LNDEGNWRSGLRVRLML 383 (532)
Q Consensus 367 Ln~~~~~~~glrV~l~~ 383 (532)
||+..++++.|+|....
T Consensus 62 LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 62 LSGATIVDQSVTITPAE 78 (260)
T ss_pred hcCCeeCCceEEEEecc
Confidence 99999999888887754
No 29
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.27 E-value=6.9e-12 Score=117.88 Aligned_cols=75 Identities=27% Similarity=0.313 Sum_probs=66.9
Q ss_pred ceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHH
Q 009552 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (532)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~L 367 (532)
.+.|||+||+.+++..||+.+|..||.|.+|+|-+- .-|||||||++.-||+.|+..|
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn----------------------PPGfAFVEFed~RDA~DAvr~L 67 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN----------------------PPGFAFVEFEDPRDAEDAVRYL 67 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec----------------------CCCceEEeccCcccHHHHHhhc
Confidence 578999999999999999999999999999999531 2579999999999999999999
Q ss_pred cCCCCCCCceEEEEeee
Q 009552 368 NDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 368 n~~~~~~~glrV~l~~k 384 (532)
++..+.+.-|+|++-..
T Consensus 68 DG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 68 DGKDICGSRIRVELSTG 84 (195)
T ss_pred CCccccCceEEEEeecC
Confidence 99998887788887654
No 30
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.27 E-value=9e-12 Score=138.47 Aligned_cols=81 Identities=20% Similarity=0.240 Sum_probs=69.8
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
..++|||+||+.++++++|+++|+.||.|++++|.++..+ + ..||||||+|++.++|.+||+.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~t----------g-------ksKGfGFVeFe~~e~A~kAI~a 265 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTG----------R-------GHKGYGFIEYNNLQSQSEAIAS 265 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCC----------C-------CcCCeEEEEECCHHHHHHHHHH
Confidence 3479999999999999999999999999999999875421 1 1388999999999999999999
Q ss_pred HcCCCCCCCceEEEEeee
Q 009552 367 LNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 367 Ln~~~~~~~glrV~l~~k 384 (532)
||+..+.++.|+|.....
T Consensus 266 mNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 266 MNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred hCCCeeCCeEEEEEecCC
Confidence 999988888888875543
No 31
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.26 E-value=2e-11 Score=133.28 Aligned_cols=79 Identities=22% Similarity=0.267 Sum_probs=69.6
Q ss_pred ceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHH
Q 009552 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (532)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~L 367 (532)
.++|||+|||.++|+++|+++|+.||.|+.+.|+.+..+ + .++|||||+|++.++|++||+.|
T Consensus 295 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----------g-------~~~g~afv~f~~~~~a~~A~~~l 357 (509)
T TIGR01642 295 KDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIAT----------G-------LSKGYAFCEYKDPSVTDVAIAAL 357 (509)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----------C-------CcCeEEEEEECCHHHHHHHHHHc
Confidence 478999999999999999999999999999999865321 1 23889999999999999999999
Q ss_pred cCCCCCCCceEEEEee
Q 009552 368 NDEGNWRSGLRVRLML 383 (532)
Q Consensus 368 n~~~~~~~glrV~l~~ 383 (532)
|+..++++.|+|.++.
T Consensus 358 ~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 358 NGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEECCeEEEEEECc
Confidence 9999998888888764
No 32
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.23 E-value=2.4e-11 Score=115.14 Aligned_cols=75 Identities=28% Similarity=0.314 Sum_probs=59.4
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
.+|+|||+|||.++.+.+|++||.+||.|..|.+..+. ..-.|||||||+.-+|+.||..
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~--------------------g~ppfafVeFEd~RDAeDAiyg 64 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP--------------------GPPPFAFVEFEDPRDAEDAIYG 64 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC--------------------CCCCeeEEEecCccchhhhhhc
Confidence 46899999999999999999999999999999883211 1135999999999999999987
Q ss_pred HcCCCCCCCceEEEE
Q 009552 367 LNDEGNWRSGLRVRL 381 (532)
Q Consensus 367 Ln~~~~~~~glrV~l 381 (532)
-++-.+++--|+|++
T Consensus 65 RdGYdydg~rLRVEf 79 (241)
T KOG0105|consen 65 RDGYDYDGCRLRVEF 79 (241)
T ss_pred ccccccCcceEEEEe
Confidence 776554443444443
No 33
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.23 E-value=8e-11 Score=118.46 Aligned_cols=85 Identities=22% Similarity=0.234 Sum_probs=75.5
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
.-+||||.-|++++++.+|++.|+.||.|+.|+|++++.+++ +||||||||+++-+...|++.
T Consensus 100 Py~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgk-----------------skGYAFIeye~erdm~~AYK~ 162 (335)
T KOG0113|consen 100 PYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGK-----------------SKGYAFIEYEHERDMKAAYKD 162 (335)
T ss_pred ccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCC-----------------ccceEEEEeccHHHHHHHHHh
Confidence 558999999999999999999999999999999999865433 389999999999999999999
Q ss_pred HcCCCCCCCceEEEEeeecCCC
Q 009552 367 LNDEGNWRSGLRVRLMLRRGSK 388 (532)
Q Consensus 367 Ln~~~~~~~glrV~l~~k~~~k 388 (532)
.++..++++-|-|.+...+.-|
T Consensus 163 adG~~Idgrri~VDvERgRTvk 184 (335)
T KOG0113|consen 163 ADGIKIDGRRILVDVERGRTVK 184 (335)
T ss_pred ccCceecCcEEEEEeccccccc
Confidence 9999999998888887665444
No 34
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.19 E-value=5.4e-11 Score=95.36 Aligned_cols=65 Identities=31% Similarity=0.408 Sum_probs=53.2
Q ss_pred EEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHHcCC
Q 009552 291 VVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDE 370 (532)
Q Consensus 291 VyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~Ln~~ 370 (532)
|||+|||.++++++|+++|+.||.|..|++.+.+. + ..+++|||+|.+.++|++|++.+++.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-----------~-------~~~~~a~v~f~~~~~a~~al~~~~~~ 62 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-----------G-------QSRGFAFVEFSSEEDAKRALELLNGK 62 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-----------S-------SEEEEEEEEESSHHHHHHHHHHHTTE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-----------c-------ccCCEEEEEeCCHHHHHHHHHHCCCc
Confidence 79999999999999999999999999999975421 1 23789999999999999999988744
Q ss_pred CCC
Q 009552 371 GNW 373 (532)
Q Consensus 371 ~~~ 373 (532)
.+.
T Consensus 63 ~~~ 65 (70)
T PF14259_consen 63 EID 65 (70)
T ss_dssp EET
T ss_pred EEC
Confidence 443
No 35
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=5.5e-11 Score=116.86 Aligned_cols=79 Identities=32% Similarity=0.379 Sum_probs=68.4
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
+..||-|.||++++++++|++||..||.|.+|.|.+++.++. .||||||.|++.|+|.+||+.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~-----------------~kGFAFVtF~sRddA~rAI~~ 250 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGL-----------------SKGFAFVTFESRDDAARAIAD 250 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCc-----------------ccceEEEEEecHHHHHHHHHH
Confidence 678999999999999999999999999999999998875432 389999999999999999999
Q ss_pred HcCCCCCCCceEEEEe
Q 009552 367 LNDEGNWRSGLRVRLM 382 (532)
Q Consensus 367 Ln~~~~~~~glrV~l~ 382 (532)
||+...+.-.|+|++.
T Consensus 251 LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 251 LNGYGYDNLILRVEWS 266 (270)
T ss_pred ccCcccceEEEEEEec
Confidence 9988766555555543
No 36
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.18 E-value=9.7e-11 Score=101.76 Aligned_cols=75 Identities=27% Similarity=0.313 Sum_probs=63.6
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
-.|.|||+|||+++|.|++-+||.+||.|..|||--.. ..+|.|||.|++..+|.+|++.
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k--------------------~TrGTAFVVYedi~dAk~A~dh 76 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK--------------------ETRGTAFVVYEDIFDAKKACDH 76 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc--------------------CcCceEEEEehHhhhHHHHHHH
Confidence 35799999999999999999999999999999994321 2278999999999999999999
Q ss_pred HcCCCCCCCceEEEE
Q 009552 367 LNDEGNWRSGLRVRL 381 (532)
Q Consensus 367 Ln~~~~~~~glrV~l 381 (532)
|++.....+-+.|-.
T Consensus 77 lsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 77 LSGYNVDNRYLVVLY 91 (124)
T ss_pred hcccccCCceEEEEe
Confidence 998877666555443
No 37
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.16 E-value=5.3e-11 Score=132.44 Aligned_cols=78 Identities=23% Similarity=0.288 Sum_probs=68.9
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
..++|||+||++++++++|+++|+.||.|++|+|+++..+ ++ +||||||+|++.++|++|++.
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~T----------gk-------skGfAFVeF~s~e~A~~Ai~~ 168 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPAT----------GK-------HKGFAFVEYEVPEAAQLALEQ 168 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCC----------CC-------cCCeEEEEeCcHHHHHHHHHh
Confidence 4579999999999999999999999999999999876432 22 388999999999999999999
Q ss_pred HcCCCCCCCceEEEE
Q 009552 367 LNDEGNWRSGLRVRL 381 (532)
Q Consensus 367 Ln~~~~~~~glrV~l 381 (532)
||+..++++.|+|..
T Consensus 169 lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 169 MNGQMLGGRNIKVGR 183 (612)
T ss_pred cCCeEEecceeeecc
Confidence 999998888888864
No 38
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.16 E-value=1.1e-10 Score=125.80 Aligned_cols=79 Identities=18% Similarity=0.220 Sum_probs=69.8
Q ss_pred ceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHH
Q 009552 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (532)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~L 367 (532)
.++|||+|||.++|+++|+++|+.||.|..|+|+++..+ + ..+|||||+|.+.++|++|++.|
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~----------g-------~~~g~afV~f~~~e~A~~A~~~l 248 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPET----------G-------RSKGFGFIQFHDAEEAKEALEVM 248 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCC----------C-------ccceEEEEEECCHHHHHHHHHhc
Confidence 589999999999999999999999999999999875421 1 13789999999999999999999
Q ss_pred cCCCCCCCceEEEEee
Q 009552 368 NDEGNWRSGLRVRLML 383 (532)
Q Consensus 368 n~~~~~~~glrV~l~~ 383 (532)
|+..+.++.|+|.++.
T Consensus 249 ~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 249 NGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCcEECCEEEEEEEcc
Confidence 9988888888888865
No 39
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.15 E-value=1.1e-10 Score=129.70 Aligned_cols=80 Identities=21% Similarity=0.228 Sum_probs=66.7
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
...++|||+||+.++|+++|+++|+.||.|.+|.|+++.. + ..+|||||+|++.++|++|++
T Consensus 176 ~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~-----------g-------~~~G~afV~F~~~e~A~~Av~ 237 (562)
T TIGR01628 176 KKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGS-----------G-------RSRGFAFVNFEKHEDAAKAVE 237 (562)
T ss_pred cCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-----------C-------CcccEEEEEECCHHHHHHHHH
Confidence 3457899999999999999999999999999999976531 1 137899999999999999999
Q ss_pred HHcCCCCC----CCceEEEEee
Q 009552 366 ELNDEGNW----RSGLRVRLML 383 (532)
Q Consensus 366 ~Ln~~~~~----~~glrV~l~~ 383 (532)
.|++..++ ++.+.|..+.
T Consensus 238 ~l~g~~i~~~~~g~~l~v~~a~ 259 (562)
T TIGR01628 238 EMNGKKIGLAKEGKKLYVGRAQ 259 (562)
T ss_pred HhCCcEecccccceeeEeeccc
Confidence 99998877 6555555443
No 40
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.15 E-value=1.2e-10 Score=125.63 Aligned_cols=80 Identities=28% Similarity=0.314 Sum_probs=68.3
Q ss_pred hccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHH
Q 009552 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (532)
Q Consensus 285 ~~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv 364 (532)
+...+||||+|||.++++++|+++|+.||.|..|+|+.++.++ + +||||||+|.+.++|++||
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~----------~-------skg~afVeF~~~e~A~~Al 148 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSR----------R-------SKGVAYVEFYDVESVIKAL 148 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCC----------C-------cceEEEEEECCHHHHHHHH
Confidence 4467899999999999999999999999999999998764321 1 3889999999999999999
Q ss_pred HHHcCCCCCCCceEEEEe
Q 009552 365 AELNDEGNWRSGLRVRLM 382 (532)
Q Consensus 365 ~~Ln~~~~~~~glrV~l~ 382 (532)
. |++..+.++.|.|...
T Consensus 149 ~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 149 A-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred H-hCCCEECCeeeEEeec
Confidence 6 8988888777776653
No 41
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.14 E-value=1.1e-10 Score=105.72 Aligned_cols=86 Identities=24% Similarity=0.377 Sum_probs=74.7
Q ss_pred hccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHH
Q 009552 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (532)
Q Consensus 285 ~~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv 364 (532)
.+..-+|||.++.+++|+++|.+.|..||+|++|.+..|+ |++-. ||||+|||++.++|++|+
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDR----------RtGy~-------KGYaLvEYet~keAq~A~ 131 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDR----------RTGYV-------KGYALVEYETLKEAQAAI 131 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeecccc----------ccccc-------cceeeeehHhHHHHHHHH
Confidence 4456789999999999999999999999999999997765 43332 899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeeecCC
Q 009552 365 AELNDEGNWRSGLRVRLMLRRGS 387 (532)
Q Consensus 365 ~~Ln~~~~~~~glrV~l~~k~~~ 387 (532)
..||+..+.+..+.|.+..-+.+
T Consensus 132 ~~~Ng~~ll~q~v~VDw~Fv~gp 154 (170)
T KOG0130|consen 132 DALNGAELLGQNVSVDWCFVKGP 154 (170)
T ss_pred HhccchhhhCCceeEEEEEecCC
Confidence 99999999999999998765443
No 42
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.13 E-value=3.5e-10 Score=108.95 Aligned_cols=79 Identities=35% Similarity=0.453 Sum_probs=69.6
Q ss_pred ceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHH
Q 009552 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (532)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~L 367 (532)
.++|||+||+.++|+++|.++|+.||.|..|+|..++.+ + ..+|||||+|++.++|..|++.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~----------~-------~~~g~~~v~f~~~~~~~~a~~~~ 177 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRET----------G-------KSRGFAFVEFESEESAEKAIEEL 177 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeecccc----------C-------ccCceEEEEecCHHHHHHHHHHc
Confidence 589999999999999999999999999999999876421 1 23889999999999999999999
Q ss_pred cCCCCCCCceEEEEee
Q 009552 368 NDEGNWRSGLRVRLML 383 (532)
Q Consensus 368 n~~~~~~~glrV~l~~ 383 (532)
++..+.++.|+|....
T Consensus 178 ~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 178 NGKELEGRPLRVQKAQ 193 (306)
T ss_pred CCCeECCceeEeeccc
Confidence 9888888888888754
No 43
>smart00362 RRM_2 RNA recognition motif.
Probab=99.13 E-value=2.1e-10 Score=89.23 Aligned_cols=69 Identities=35% Similarity=0.442 Sum_probs=58.0
Q ss_pred eEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHHcC
Q 009552 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (532)
Q Consensus 290 tVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~Ln~ 369 (532)
+|||+|||.+++.++|+++|+.||.|..+++.... + .++++|||+|.+.++|++|++.|++
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~------------~-------~~~~~~~v~f~~~~~a~~a~~~~~~ 61 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT------------G-------KSKGFAFVEFESEEDAEKAIEALNG 61 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC------------C-------CCCceEEEEeCCHHHHHHHHHHhCC
Confidence 58999999999999999999999999999987531 0 1267999999999999999999987
Q ss_pred CCCCCCce
Q 009552 370 EGNWRSGL 377 (532)
Q Consensus 370 ~~~~~~gl 377 (532)
..+.+..+
T Consensus 62 ~~~~~~~i 69 (72)
T smart00362 62 TKLGGRPL 69 (72)
T ss_pred cEECCEEE
Confidence 66544433
No 44
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.13 E-value=1.8e-10 Score=127.82 Aligned_cols=68 Identities=25% Similarity=0.350 Sum_probs=60.1
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
..++|||+|||.++++++|+++|++||.|..|+|++|. + + .++|||||+|.+.|+|++||+.
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~-s----------G-------~sRGfaFV~F~~~e~A~~Ai~~ 118 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDF-S----------G-------QNRGYAFVTFCGKEEAKEAVKL 118 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECC-C----------C-------CccceEEEEeCCHHHHHHHHHH
Confidence 46899999999999999999999999999999998762 1 1 2388999999999999999999
Q ss_pred HcCCCC
Q 009552 367 LNDEGN 372 (532)
Q Consensus 367 Ln~~~~ 372 (532)
||+..+
T Consensus 119 lng~~i 124 (578)
T TIGR01648 119 LNNYEI 124 (578)
T ss_pred cCCCee
Confidence 997654
No 45
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.13 E-value=2e-10 Score=120.65 Aligned_cols=166 Identities=25% Similarity=0.299 Sum_probs=115.4
Q ss_pred ChHHHHHHHhccccc-----------cCCCc-------cccc---HHHHhhhccCCCCceecccccchh-hHHHhhh---
Q 009552 194 NDESIQKVLNQVEYY-----------FSDLN-------LATT---DHLIRFILKDPEGYVPISTVASFK-KIKAIIS--- 248 (532)
Q Consensus 194 ~~e~~~kI~kQvEyY-----------FSD~N-------L~~D---~fL~~~i~kd~dG~Vpi~~i~sFk-KmK~Lt~--- 248 (532)
+.+..++.+++|.-| .|-+| ++|. +-+++.|++-.+|-|++-|..+=. |+|.-.-
T Consensus 134 ~Ke~Aq~Aik~lnn~Eir~GK~igvc~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFv 213 (506)
T KOG0117|consen 134 TKEEAQEAIKELNNYEIRPGKLLGVCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFV 213 (506)
T ss_pred cHHHHHHHHHHhhCccccCCCEeEEEEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEE
Confidence 456666677777655 23332 3332 235555777789988888876542 3332110
Q ss_pred ---cHHHHHHhhhc--CCceEEeeccceeeccCCCcchhhhhc-cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeC
Q 009552 249 ---SHSHLASVLRK--SSKLVVSEDGKKIKRQNPLTESDLEEL-QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCL 322 (532)
Q Consensus 249 ---d~~~I~eALr~--S~~LeVsedg~kVRR~~pl~e~d~~~~-~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~ 322 (532)
+....+.|-++ +..+.|....-.|...+|..+.|.+.+ +-+.|||+||+.++|+|.|+++|+.||.|..|.+++
T Consensus 214 eYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~r 293 (506)
T KOG0117|consen 214 EYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPR 293 (506)
T ss_pred EeecchhHHHHHhhccCCceeecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeeccc
Confidence 12222222222 235667666667777777665544332 346899999999999999999999999999998753
Q ss_pred CCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEEeee
Q 009552 323 PQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 323 p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~Ln~~~~~~~glrV~l~~k 384 (532)
.||||-|.+.++|.+|++++|+..+++..|.|.|+..
T Consensus 294 -------------------------DYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP 330 (506)
T KOG0117|consen 294 -------------------------DYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKP 330 (506)
T ss_pred -------------------------ceeEEeecchHHHHHHHHHhcCceecCceEEEEecCC
Confidence 3899999999999999999999999998888887753
No 46
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.12 E-value=1.9e-10 Score=114.02 Aligned_cols=76 Identities=13% Similarity=0.167 Sum_probs=65.5
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
...||||+||+.++|+++|+++|+.||+|..|+|++++. .++||||+|++.++|+.|+.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~e--------------------t~gfAfVtF~d~~aaetAll- 62 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGE--------------------YACTAYVTFKDAYALETAVL- 62 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCC--------------------cceEEEEEECCHHHHHHHHh-
Confidence 357999999999999999999999999999999986531 15699999999999999995
Q ss_pred HcCCCCCCCceEEEEee
Q 009552 367 LNDEGNWRSGLRVRLML 383 (532)
Q Consensus 367 Ln~~~~~~~glrV~l~~ 383 (532)
||+..+.+..|.|....
T Consensus 63 LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 63 LSGATIVDQRVCITRWG 79 (243)
T ss_pred cCCCeeCCceEEEEeCc
Confidence 99999888777666544
No 47
>PLN03213 repressor of silencing 3; Provisional
Probab=99.11 E-value=1.9e-10 Score=121.77 Aligned_cols=75 Identities=19% Similarity=0.253 Sum_probs=66.3
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCH--HHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESV--ELAEKAI 364 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~--E~AekAv 364 (532)
...+|||+||.+++++++|+++|+.||.|+.|.|++.. .||||||||.+. +++.+||
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRET---------------------GRGFAFVEMssdddaEeeKAI 67 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTK---------------------GRSFAYIDFSPSSTNSLTKLF 67 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeccc---------------------CCceEEEEecCCcHHHHHHHH
Confidence 45689999999999999999999999999999997321 178999999987 6899999
Q ss_pred HHHcCCCCCCCceEEEEe
Q 009552 365 AELNDEGNWRSGLRVRLM 382 (532)
Q Consensus 365 ~~Ln~~~~~~~glrV~l~ 382 (532)
..||+..+.++.|+|..+
T Consensus 68 SaLNGAEWKGR~LKVNKA 85 (759)
T PLN03213 68 STYNGCVWKGGRLRLEKA 85 (759)
T ss_pred HHhcCCeecCceeEEeec
Confidence 999999988888888874
No 48
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.10 E-value=8.7e-11 Score=122.91 Aligned_cols=143 Identities=17% Similarity=0.224 Sum_probs=94.8
Q ss_pred CCcccccHHHHhhhccCCCCceecccccchhhHHHhhhcHHHHHHhhhcCCceEEeeccceeeccCCCcchhhhh-ccce
Q 009552 211 DLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKRQNPLTESDLEE-LQSR 289 (532)
Q Consensus 211 D~NL~~D~fL~~~i~kd~dG~Vpi~~i~sFkKmK~Lt~d~~~I~eALr~S~~LeVsedg~kVRR~~pl~e~d~~~-~~~r 289 (532)
.+||.||+--.. ...+-||. |.+. ++.+.+..||.+-..|.=.---..||-.+ .+++. +..+
T Consensus 63 einl~kDk~t~~---s~gcCFv~------~~tr----k~a~~a~~Alhn~ktlpG~~~pvqvk~Ad----~E~er~~~e~ 125 (510)
T KOG0144|consen 63 EINLIKDKSTGQ---SKGCCFVK------YYTR----KEADEAINALHNQKTLPGMHHPVQVKYAD----GERERIVEER 125 (510)
T ss_pred EEEeecccccCc---ccceEEEE------eccH----HHHHHHHHHhhcccccCCCCcceeecccc----hhhhccccch
Confidence 678988875442 33455554 4332 23455566666554332111111222221 11111 3467
Q ss_pred eEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHHcC
Q 009552 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (532)
Q Consensus 290 tVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~Ln~ 369 (532)
.|||+-|+..+|+.||+++|++||.|+.++|+++.. + ..||||||.|++.|-|..||+.||+
T Consensus 126 KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~-----------~-------~sRGcaFV~fstke~A~~Aika~ng 187 (510)
T KOG0144|consen 126 KLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD-----------G-------LSRGCAFVKFSTKEMAVAAIKALNG 187 (510)
T ss_pred hhhhhhccccccHHHHHHHHHhhCccchhhheeccc-----------c-------cccceeEEEEehHHHHHHHHHhhcc
Confidence 899999999999999999999999999999998642 1 1388999999999999999999998
Q ss_pred CCCCC---CceEEEEeeecCCC
Q 009552 370 EGNWR---SGLRVRLMLRRGSK 388 (532)
Q Consensus 370 ~~~~~---~glrV~l~~k~~~k 388 (532)
....+ ..|-|+++..+..|
T Consensus 188 ~~tmeGcs~PLVVkFADtqkdk 209 (510)
T KOG0144|consen 188 TQTMEGCSQPLVVKFADTQKDK 209 (510)
T ss_pred ceeeccCCCceEEEecccCCCc
Confidence 65432 35777777665444
No 49
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.09 E-value=1.4e-10 Score=117.98 Aligned_cols=81 Identities=21% Similarity=0.191 Sum_probs=71.8
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
..+.|+|.|||+...+.||+.+|++||.|.+|.|+.. +.++|||+||+|++.+||++|-++
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN-------------------ERGSKGFGFVTmen~~dadRARa~ 155 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN-------------------ERGSKGFGFVTMENPADADRARAE 155 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEec-------------------cCCCCccceEEecChhhHHHHHHH
Confidence 3468999999999999999999999999999999853 224599999999999999999999
Q ss_pred HcCCCCCCCceEEEEeeecC
Q 009552 367 LNDEGNWRSGLRVRLMLRRG 386 (532)
Q Consensus 367 Ln~~~~~~~glrV~l~~k~~ 386 (532)
|++...+++.|.|+.+..+.
T Consensus 156 LHgt~VEGRkIEVn~ATarV 175 (376)
T KOG0125|consen 156 LHGTVVEGRKIEVNNATARV 175 (376)
T ss_pred hhcceeeceEEEEeccchhh
Confidence 99999999988888876553
No 50
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.08 E-value=3e-10 Score=124.27 Aligned_cols=73 Identities=22% Similarity=0.184 Sum_probs=63.8
Q ss_pred ceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHH
Q 009552 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (532)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~L 367 (532)
+|+|||+|||+++++++|+++|+.||.|.+|+|+.. |+||||||++.|+|++||+.|
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~-----------------------k~~afVef~~~e~A~~Ai~~~ 58 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG-----------------------KRQALVEFEDEESAKACVNFA 58 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC-----------------------CCEEEEEeCchHHHHHHHHHh
Confidence 689999999999999999999999999999998631 679999999999999999975
Q ss_pred --cCCCCCCCceEEEEee
Q 009552 368 --NDEGNWRSGLRVRLML 383 (532)
Q Consensus 368 --n~~~~~~~glrV~l~~ 383 (532)
++..++++.|+|.+..
T Consensus 59 ~~~~~~l~g~~l~v~~s~ 76 (481)
T TIGR01649 59 TSVPIYIRGQPAFFNYST 76 (481)
T ss_pred hcCCceEcCeEEEEEecC
Confidence 5566777777777664
No 51
>smart00360 RRM RNA recognition motif.
Probab=99.05 E-value=6.6e-10 Score=86.00 Aligned_cols=70 Identities=36% Similarity=0.480 Sum_probs=56.8
Q ss_pred EecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHHcCCCC
Q 009552 293 AENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGN 372 (532)
Q Consensus 293 V~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~Ln~~~~ 372 (532)
|+|||.+++.++|+++|+.||.|..+.|..+.. .+ .++++|||+|.+.++|++|++.|++..+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~----------~~-------~~~~~a~v~f~~~~~a~~a~~~~~~~~~ 63 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKD----------TG-------KSKGFAFVEFESEEDAEKALEALNGKEL 63 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCC----------CC-------CCCceEEEEeCCHHHHHHHHHHcCCCee
Confidence 578999999999999999999999999975431 11 2378999999999999999999987666
Q ss_pred CCCceEE
Q 009552 373 WRSGLRV 379 (532)
Q Consensus 373 ~~~glrV 379 (532)
.++.++|
T Consensus 64 ~~~~~~v 70 (71)
T smart00360 64 DGRPLKV 70 (71)
T ss_pred CCcEEEe
Confidence 5544443
No 52
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.02 E-value=7.7e-10 Score=121.08 Aligned_cols=75 Identities=20% Similarity=0.257 Sum_probs=67.0
Q ss_pred cceeEEEecCCC-cCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 287 QSRIVVAENLPE-DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 287 ~~rtVyV~nLP~-d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
..++|||+||++ .+|+++|+++|+.||.|..|+|+++. +|||||+|++.++|++||+
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~----------------------~g~afV~f~~~~~A~~Ai~ 331 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK----------------------KETALIEMADPYQAQLALT 331 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC----------------------CCEEEEEECCHHHHHHHHH
Confidence 467999999997 69999999999999999999997531 6799999999999999999
Q ss_pred HHcCCCCCCCceEEEEee
Q 009552 366 ELNDEGNWRSGLRVRLML 383 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~ 383 (532)
.||+..++++.|+|.+..
T Consensus 332 ~lng~~l~g~~l~v~~s~ 349 (481)
T TIGR01649 332 HLNGVKLFGKPLRVCPSK 349 (481)
T ss_pred HhCCCEECCceEEEEEcc
Confidence 999999998888887653
No 53
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=9.2e-10 Score=109.69 Aligned_cols=68 Identities=22% Similarity=0.297 Sum_probs=61.7
Q ss_pred hccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHH
Q 009552 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (532)
Q Consensus 285 ~~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv 364 (532)
..+.+||||+||...+|+++|++.|+.||.|..|||..+ ||||||.|++.|.|.+||
T Consensus 161 sp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-----------------------qGYaFVrF~tkEaAahAI 217 (321)
T KOG0148|consen 161 SPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-----------------------QGYAFVRFETKEAAAHAI 217 (321)
T ss_pred CCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-----------------------cceEEEEecchhhHHHHH
Confidence 346799999999999999999999999999999999643 789999999999999999
Q ss_pred HHHcCCCCCCC
Q 009552 365 AELNDEGNWRS 375 (532)
Q Consensus 365 ~~Ln~~~~~~~ 375 (532)
..+|+..+.+.
T Consensus 218 v~mNntei~G~ 228 (321)
T KOG0148|consen 218 VQMNNTEIGGQ 228 (321)
T ss_pred HHhcCceeCce
Confidence 99999876654
No 54
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.01 E-value=1.9e-09 Score=84.32 Aligned_cols=73 Identities=36% Similarity=0.479 Sum_probs=60.6
Q ss_pred eEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHHcC
Q 009552 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (532)
Q Consensus 290 tVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~Ln~ 369 (532)
+|||+|||.+++.++|+++|+.||.|..+.+..... . ..+++|||+|.+.++|..|++.+++
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~-----------~-------~~~~~~~v~f~s~~~a~~a~~~~~~ 62 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKD-----------T-------KSKGFAFVEFEDEEDAEKALEALNG 62 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCC-----------C-------CcceEEEEEECCHHHHHHHHHHhCC
Confidence 589999999999999999999999999999975421 0 2367999999999999999999998
Q ss_pred CCCCCCceEEE
Q 009552 370 EGNWRSGLRVR 380 (532)
Q Consensus 370 ~~~~~~glrV~ 380 (532)
..++++.+.|.
T Consensus 63 ~~~~~~~~~v~ 73 (74)
T cd00590 63 KELGGRPLRVE 73 (74)
T ss_pred CeECCeEEEEe
Confidence 76665555443
No 55
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.01 E-value=1.6e-09 Score=115.80 Aligned_cols=81 Identities=23% Similarity=0.276 Sum_probs=63.5
Q ss_pred ceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHH
Q 009552 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (532)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~L 367 (532)
..+|||+|||.+++.++|+++|+.||.|+..+|.. |+.. .++.+|+||+|++.++++.||++-
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~v------------r~~~-----~~~~~fgFV~f~~~~~~~~~i~As 350 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQV------------RSPG-----GKNPCFGFVEFENAAAVQNAIEAS 350 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEE------------eccC-----CCcCceEEEEEeecchhhhhhhcC
Confidence 35699999999999999999999999999999853 2200 011369999999999999999854
Q ss_pred cCCCCCCCceEEEEeeecCCC
Q 009552 368 NDEGNWRSGLRVRLMLRRGSK 388 (532)
Q Consensus 368 n~~~~~~~glrV~l~~k~~~k 388 (532)
.+...+++|.+.+++..-
T Consensus 351 ---p~~ig~~kl~Veek~~~~ 368 (419)
T KOG0116|consen 351 ---PLEIGGRKLNVEEKRPGF 368 (419)
T ss_pred ---ccccCCeeEEEEeccccc
Confidence 455667888888775543
No 56
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.00 E-value=2.5e-09 Score=112.59 Aligned_cols=79 Identities=28% Similarity=0.363 Sum_probs=66.7
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
-..+-|||+.||.|+.+++|.-||++.|+|-.+||+.|..++ .+||||||+|.+.|+|++||+
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG-----------------~nRGYAFVtf~~Ke~Aq~Aik 143 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSG-----------------DNRGYAFVTFCTKEEAQEAIK 143 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCC-----------------CCcceEEEEeecHHHHHHHHH
Confidence 356899999999999999999999999999999999875432 358999999999999999999
Q ss_pred HHcCCCCC-CCceEEEE
Q 009552 366 ELNDEGNW-RSGLRVRL 381 (532)
Q Consensus 366 ~Ln~~~~~-~~glrV~l 381 (532)
.||+.++- ++-|+|.+
T Consensus 144 ~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 144 ELNNYEIRPGKLLGVCV 160 (506)
T ss_pred HhhCccccCCCEeEEEE
Confidence 99987653 33455544
No 57
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.00 E-value=6.8e-10 Score=119.28 Aligned_cols=82 Identities=32% Similarity=0.428 Sum_probs=73.5
Q ss_pred eeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHHc
Q 009552 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (532)
Q Consensus 289 rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~Ln 368 (532)
++|||+|+|+++++++|.++|++.|.|.++++.+|+.+++ .|||+|+||.+.|+|++|++.||
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~-----------------~~G~~f~~~~~~~~~~~a~~~lN 81 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGK-----------------PKGFGFCEFTDEETAERAIRNLN 81 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCC-----------------cCceeeEecCchhhHHHHHHhcC
Confidence 7999999999999999999999999999999999875432 38899999999999999999999
Q ss_pred CCCCCCCceEEEEeeecCC
Q 009552 369 DEGNWRSGLRVRLMLRRGS 387 (532)
Q Consensus 369 ~~~~~~~glrV~l~~k~~~ 387 (532)
+..+.++.|+|.+......
T Consensus 82 g~~~~gr~l~v~~~~~~~~ 100 (435)
T KOG0108|consen 82 GAEFNGRKLRVNYASNRKN 100 (435)
T ss_pred CcccCCceEEeecccccch
Confidence 9999998898888765433
No 58
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.96 E-value=1.1e-09 Score=107.27 Aligned_cols=78 Identities=17% Similarity=0.167 Sum_probs=63.1
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
.-..|||+||++++..|+|+++|++||+|....|+.|+.+++ +|||+||+|.+.|+|++|++.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~r-----------------skGyGfVTf~d~~aa~rAc~d 73 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGR-----------------SKGYGFVTFRDAEAATRACKD 73 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCcc-----------------ccceeeEEeecHHHHHHHhcC
Confidence 445799999999999999999999999999999988875433 389999999999999999986
Q ss_pred HcCCCCCCCceEEEEe
Q 009552 367 LNDEGNWRSGLRVRLM 382 (532)
Q Consensus 367 Ln~~~~~~~glrV~l~ 382 (532)
-|- .++++...+.|+
T Consensus 74 p~p-iIdGR~aNcnlA 88 (247)
T KOG0149|consen 74 PNP-IIDGRKANCNLA 88 (247)
T ss_pred CCC-cccccccccchh
Confidence 553 345554444443
No 59
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.93 E-value=1.2e-10 Score=110.24 Aligned_cols=82 Identities=22% Similarity=0.270 Sum_probs=73.6
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
.++.-|||+|||++.|+.||..+|++||+|..|.+++|+.+++ +|||||..|++.-+..-||.
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGK-----------------SKGFaFLcYEDQRSTILAVD 95 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGK-----------------SKGFAFLCYEDQRSTILAVD 95 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCc-----------------ccceEEEEecCccceEEEEe
Confidence 3677899999999999999999999999999999999875443 28899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeee
Q 009552 366 ELNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~k 384 (532)
.||+..+.++.|+|.-...
T Consensus 96 N~NGiki~gRtirVDHv~~ 114 (219)
T KOG0126|consen 96 NLNGIKILGRTIRVDHVSN 114 (219)
T ss_pred ccCCceecceeEEeeeccc
Confidence 9999999999999987653
No 60
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=7.2e-10 Score=107.56 Aligned_cols=82 Identities=27% Similarity=0.356 Sum_probs=72.8
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
+.|||||++|-+++++.-|...|=.||.|+.|.|- .+.-+.|. +||+||||+..|||..||..
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiP----------lDyesqkH-------RgFgFVefe~aEDAaaAiDN 71 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIP----------LDYESQKH-------RGFGFVEFEEAEDAAAAIDN 71 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccc----------cchhcccc-------cceeEEEeeccchhHHHhhc
Confidence 56899999999999999999999999999999984 34444443 67999999999999999999
Q ss_pred HcCCCCCCCceEEEEeeec
Q 009552 367 LNDEGNWRSGLRVRLMLRR 385 (532)
Q Consensus 367 Ln~~~~~~~glrV~l~~k~ 385 (532)
||+.+++++.|+|.++..-
T Consensus 72 MnesEL~GrtirVN~AkP~ 90 (298)
T KOG0111|consen 72 MNESELFGRTIRVNLAKPE 90 (298)
T ss_pred CchhhhcceeEEEeecCCc
Confidence 9999999999999998653
No 61
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.90 E-value=6.6e-09 Score=109.05 Aligned_cols=78 Identities=28% Similarity=0.325 Sum_probs=67.1
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhh-cCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSA-VGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~-fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
..|+|||.|||+|+.+++|++||.+ .|+|..|.++.|. ++|. +|||.|||+++|.++||++
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-----------~GK~-------rGcavVEFk~~E~~qKa~E 104 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-----------SGKA-------RGCAVVEFKDPENVQKALE 104 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-----------CCCc-------CCceEEEeeCHHHHHHHHH
Confidence 4578999999999999999999965 8999999998773 3443 7899999999999999999
Q ss_pred HHcCCCCCCCceEEEEe
Q 009552 366 ELNDEGNWRSGLRVRLM 382 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l~ 382 (532)
.||.....++.|.|+-.
T Consensus 105 ~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 105 KLNKYEVNGRELVVKED 121 (608)
T ss_pred HhhhccccCceEEEecc
Confidence 99988777777766543
No 62
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.89 E-value=2.5e-09 Score=101.41 Aligned_cols=81 Identities=22% Similarity=0.224 Sum_probs=71.5
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
+..||||+||++.++++-|.++|-++|.|.+|.|-+++.+ -..+|||||||.++|+|+-|++.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~-----------------~~~qGygF~Ef~~eedadYAiki 70 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVT-----------------QKHQGYGFAEFRTEEDADYAIKI 70 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhc-----------------ccccceeEEEEechhhhHHHHHH
Confidence 4579999999999999999999999999999998555421 12478999999999999999999
Q ss_pred HcCCCCCCCceEEEEeee
Q 009552 367 LNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 367 Ln~~~~~~~glrV~l~~k 384 (532)
||...+.++.|+|..+.+
T Consensus 71 ln~VkLYgrpIrv~kas~ 88 (203)
T KOG0131|consen 71 LNMVKLYGRPIRVNKASA 88 (203)
T ss_pred HHHHHhcCceeEEEeccc
Confidence 999999999999998873
No 63
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.89 E-value=3.3e-09 Score=105.17 Aligned_cols=113 Identities=20% Similarity=0.285 Sum_probs=80.6
Q ss_pred HHHHHhhhcCCceEEeeccceeeccCCCcchhhhhccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCC
Q 009552 251 SHLASVLRKSSKLVVSEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGA 330 (532)
Q Consensus 251 ~~I~eALr~S~~LeVsedg~kVRR~~pl~e~d~~~~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~ 330 (532)
++...|+..-.-|.+... .|+-....+.. ..++...|||.+||..+|..||+.+|+.||.|..-||+.|+.++-
T Consensus 94 ~DAe~AintlNGLrLQ~K--TIKVSyARPSs--~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~-- 167 (360)
T KOG0145|consen 94 KDAEKAINTLNGLRLQNK--TIKVSYARPSS--DSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGL-- 167 (360)
T ss_pred HHHHHHHhhhcceeeccc--eEEEEeccCCh--hhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccce--
Confidence 344444444444444333 23322222322 346677899999999999999999999999999999988765322
Q ss_pred CCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHHcCCCCCCC--ceEEEEeee
Q 009552 331 SSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRS--GLRVRLMLR 384 (532)
Q Consensus 331 p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~Ln~~~~~~~--glrV~l~~k 384 (532)
.||.+||.|+..++|+.||+.||+...-+- .|.|+++..
T Consensus 168 ---------------srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFann 208 (360)
T KOG0145|consen 168 ---------------SRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANN 208 (360)
T ss_pred ---------------ecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCC
Confidence 378999999999999999999998765443 466666543
No 64
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.88 E-value=2.3e-09 Score=103.36 Aligned_cols=78 Identities=19% Similarity=0.235 Sum_probs=69.0
Q ss_pred eeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHHc
Q 009552 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (532)
Q Consensus 289 rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~Ln 368 (532)
.+|-|-||-+-+|.++|..+|++||.|..|-|-+|..+. ..+|||||-|.+..+|++|+++|+
T Consensus 14 ~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr-----------------~sRgFaFVrf~~k~daedA~damD 76 (256)
T KOG4207|consen 14 TSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTR-----------------QSRGFAFVRFHDKRDAEDALDAMD 76 (256)
T ss_pred eeEEecceeccCCHHHHHHHHHHhCcccceecccccccc-----------------cccceeEEEeeecchHHHHHHhhc
Confidence 589999999999999999999999999999996654321 238899999999999999999999
Q ss_pred CCCCCCCceEEEEee
Q 009552 369 DEGNWRSGLRVRLML 383 (532)
Q Consensus 369 ~~~~~~~glrV~l~~ 383 (532)
+..++++.|+|.++.
T Consensus 77 G~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 77 GAVLDGRELRVQMAR 91 (256)
T ss_pred ceeeccceeeehhhh
Confidence 999999999988764
No 65
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.88 E-value=6e-09 Score=80.52 Aligned_cols=55 Identities=42% Similarity=0.512 Sum_probs=46.4
Q ss_pred HHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEE
Q 009552 305 LMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRL 381 (532)
Q Consensus 305 L~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~Ln~~~~~~~glrV~l 381 (532)
|.++|++||+|..|.+.... +++|||+|++.++|++|++.||+..+.++.|+|.+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----------------------~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~ 55 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----------------------RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSY 55 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----------------------TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----------------------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 68999999999999996421 36899999999999999999999888777777765
No 66
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.85 E-value=4.9e-09 Score=112.59 Aligned_cols=160 Identities=19% Similarity=0.212 Sum_probs=102.9
Q ss_pred hccccccCCCcccccHHHHhhhcc---CCCCceecccccchhhHHHhhhcHHHHHHhhhcCCceEEeeccceeecc----
Q 009552 203 NQVEYYFSDLNLATTDHLIRFILK---DPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKRQ---- 275 (532)
Q Consensus 203 kQvEyYFSD~NL~~D~fL~~~i~k---d~dG~Vpi~~i~sFkKmK~Lt~d~~~I~eALr~S~~LeVsedg~kVRR~---- 275 (532)
.|||-+||+.--.+-.|+...-.. ..-|||.+++.-.-++..+.+..... .-.+|.|.....+.|-.
T Consensus 20 ~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf------~Gr~l~v~~A~~R~r~e~~~~ 93 (678)
T KOG0127|consen 20 EQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKF------EGRILNVDPAKKRARSEEVEK 93 (678)
T ss_pred hHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcc------cceecccccccccccchhccc
Confidence 488889999988887776654322 35577776665544443333322000 00012222211111111
Q ss_pred ---------C--CCcchhhhhccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCccc
Q 009552 276 ---------N--PLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLF 344 (532)
Q Consensus 276 ---------~--pl~e~d~~~~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~ 344 (532)
. +-+..+.-....-.|+|+|||+.+..++|+.+|+.||.|..|.| |+. +.++.
T Consensus 94 ~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~I--P~k---------~dgkl----- 157 (678)
T KOG0127|consen 94 GENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVI--PRK---------KDGKL----- 157 (678)
T ss_pred ccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEc--ccC---------CCCCc-----
Confidence 0 00011111122457999999999999999999999999999988 321 12221
Q ss_pred ccccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEEeeecC
Q 009552 345 SNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRLMLRRG 386 (532)
Q Consensus 345 ~~KG~AFVEFet~E~AekAv~~Ln~~~~~~~glrV~l~~k~~ 386 (532)
.|||||.|.+..+|++|++.+|+..+.++.+-|+++..+.
T Consensus 158 --cGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd 197 (678)
T KOG0127|consen 158 --CGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKD 197 (678)
T ss_pred --cceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccc
Confidence 5899999999999999999999999999999999987543
No 67
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.81 E-value=8.4e-09 Score=110.85 Aligned_cols=81 Identities=27% Similarity=0.302 Sum_probs=66.4
Q ss_pred ceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHH
Q 009552 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (532)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~L 367 (532)
.+||||+|||+|+|+++|.+.|++||+|++++|+.+..++. ++|+|||-|.+..+|++||+..
T Consensus 292 ~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~-----------------skGtAFv~Fkt~~~~~~ci~~A 354 (678)
T KOG0127|consen 292 GKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGH-----------------SKGTAFVKFKTQIAAQNCIEAA 354 (678)
T ss_pred cceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCC-----------------cccceEEEeccHHHHHHHHHhc
Confidence 38999999999999999999999999999999998754321 3889999999999999999876
Q ss_pred c-----C-CCCCCCceEEEEeeec
Q 009552 368 N-----D-EGNWRSGLRVRLMLRR 385 (532)
Q Consensus 368 n-----~-~~~~~~glrV~l~~k~ 385 (532)
. + ..+.++-|+|.++..+
T Consensus 355 spa~e~g~~ll~GR~Lkv~~Av~R 378 (678)
T KOG0127|consen 355 SPASEDGSVLLDGRLLKVTLAVTR 378 (678)
T ss_pred CccCCCceEEEeccEEeeeeccch
Confidence 2 1 2345566777776543
No 68
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=7e-09 Score=103.49 Aligned_cols=81 Identities=23% Similarity=0.285 Sum_probs=71.7
Q ss_pred eeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHHc
Q 009552 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (532)
Q Consensus 289 rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~Ln 368 (532)
--|||+.|..+++.|+|++.|..||+|...||++|..+++ +|||+||.|-..++||+||..||
T Consensus 63 fhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~K-----------------sKGYgFVSf~~k~dAEnAI~~Mn 125 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGK-----------------SKGYGFVSFPNKEDAENAIQQMN 125 (321)
T ss_pred eeEEehhcchhcchHHHHHHhccccccccceEeecccCCc-----------------ccceeEEeccchHHHHHHHHHhC
Confidence 3699999999999999999999999999999999865433 38999999999999999999999
Q ss_pred CCCCCCCceEEEEeeecC
Q 009552 369 DEGNWRSGLRVRLMLRRG 386 (532)
Q Consensus 369 ~~~~~~~glrV~l~~k~~ 386 (532)
+.=+.++.||-..+.++.
T Consensus 126 GqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 126 GQWLGRRTIRTNWATRKP 143 (321)
T ss_pred CeeeccceeeccccccCc
Confidence 988888888888777655
No 69
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.80 E-value=7.5e-09 Score=114.85 Aligned_cols=95 Identities=22% Similarity=0.353 Sum_probs=78.5
Q ss_pred eeeccCCCcch--hhhhccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCccccccc
Q 009552 271 KIKRQNPLTES--DLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKL 348 (532)
Q Consensus 271 kVRR~~pl~e~--d~~~~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG 348 (532)
+-||+.-++.. +--.+.+|||||++|+..++++||..+|+.||+|.+|.++-+ ++
T Consensus 402 reRr~kglP~I~pd~isV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~-----------------------R~ 458 (894)
T KOG0132|consen 402 RERRKKGLPTIPPDHISVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP-----------------------RG 458 (894)
T ss_pred cccccccCCCCCCcceeEeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC-----------------------Cc
Confidence 45555544432 233567999999999999999999999999999999998642 67
Q ss_pred EEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEEeeecCCC
Q 009552 349 HAFVEYESVELAEKAIAELNDEGNWRSGLRVRLMLRRGSK 388 (532)
Q Consensus 349 ~AFVEFet~E~AekAv~~Ln~~~~~~~glrV~l~~k~~~k 388 (532)
||||......+|++|+.+|++..+..+.|+|.++..+..+
T Consensus 459 cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~k 498 (894)
T KOG0132|consen 459 CAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPK 498 (894)
T ss_pred eeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcc
Confidence 9999999999999999999998888888888887765544
No 70
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.78 E-value=9.6e-09 Score=112.28 Aligned_cols=72 Identities=24% Similarity=0.334 Sum_probs=56.8
Q ss_pred hccceeEEEecCCCcCcHHHHHHHhhhcC------------CeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEE
Q 009552 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVG------------SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFV 352 (532)
Q Consensus 285 ~~~~rtVyV~nLP~d~t~edL~elFs~fG------------~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFV 352 (532)
+...|+|||+|||.++|+++|+++|+.|+ .|..|.+. ..||||||
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~-----------------------~~kg~afV 228 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN-----------------------KEKNFAFL 228 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC-----------------------CCCCEEEE
Confidence 45679999999999999999999999862 33344332 13789999
Q ss_pred EeCCHHHHHHHHHHHcCCCCCCCceEEE
Q 009552 353 EYESVELAEKAIAELNDEGNWRSGLRVR 380 (532)
Q Consensus 353 EFet~E~AekAv~~Ln~~~~~~~glrV~ 380 (532)
||++.|+|++||+ ||+..+.+..|+|.
T Consensus 229 eF~~~e~A~~Al~-l~g~~~~g~~l~v~ 255 (509)
T TIGR01642 229 EFRTVEEATFAMA-LDSIIYSNVFLKIR 255 (509)
T ss_pred EeCCHHHHhhhhc-CCCeEeeCceeEec
Confidence 9999999999995 99877766555554
No 71
>smart00361 RRM_1 RNA recognition motif.
Probab=98.77 E-value=1.8e-08 Score=81.74 Aligned_cols=63 Identities=19% Similarity=0.240 Sum_probs=48.2
Q ss_pred HHHHHHHhh----hcCCeeEEE-EeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHHcCCCCCCCc
Q 009552 302 HQNLMKIFS----AVGSVKTIR-TCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSG 376 (532)
Q Consensus 302 ~edL~elFs----~fG~V~~Vr-i~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~Ln~~~~~~~g 376 (532)
+++|+++|+ +||.|.+|. |..++.+. ....+||+||+|++.++|++|++.||+..+.++.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~---------------~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~ 66 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGY---------------ENHKRGNVYITFERSEDAARAIVDLNGRYFDGRT 66 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCC---------------CCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 578888888 999999995 65553210 0113789999999999999999999998777665
Q ss_pred eEE
Q 009552 377 LRV 379 (532)
Q Consensus 377 lrV 379 (532)
|++
T Consensus 67 l~~ 69 (70)
T smart00361 67 VKA 69 (70)
T ss_pred EEe
Confidence 543
No 72
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.74 E-value=4.6e-08 Score=100.57 Aligned_cols=155 Identities=17% Similarity=0.150 Sum_probs=103.7
Q ss_pred cCCCCCChHHHHHHHhccccccCCCcccccHHHHhhhcc------CCCCceecccccchhhHHH---hhhcH---HHHHH
Q 009552 188 HQHGGLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILK------DPEGYVPISTVASFKKIKA---IISSH---SHLAS 255 (532)
Q Consensus 188 ~~~~~~~~e~~~kI~kQvEyYFSD~NL~~D~fL~~~i~k------d~dG~Vpi~~i~sFkKmK~---Lt~d~---~~I~e 255 (532)
...+...-+.+.+|..---||--+.-+....|.+.+++. ..|-++++.++. ++||. ...|. +++..
T Consensus 136 ~~~a~~~~d~l~~l~rt~p~ykrn~p~Icsf~v~geckRG~ec~yrhEkp~d~~L~~--qni~dryyg~ndPva~kil~r 213 (377)
T KOG0153|consen 136 KARALAPNDMLRKLQRTTPYYKRNRPHICSFFVKGECKRGAECPYRHEKPPDDPLSL--QNIKDRYYGLNDPVALKILNR 213 (377)
T ss_pred hhcccchHHHHHHHhccCccccCCCCccccceeeccccccccccccccCCCCcchhh--cccccccccccChHHHHHHhh
Confidence 344555667777888888899888888887787776542 122333333222 23222 11121 11111
Q ss_pred hhhcCCceEEeeccceeeccCCCcchhhhhccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCC
Q 009552 256 VLRKSSKLVVSEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSR 335 (532)
Q Consensus 256 ALr~S~~LeVsedg~kVRR~~pl~e~d~~~~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R 335 (532)
|+..+. .+..++...+||||++|-..+++.+|++.|.+||+|++|++..-
T Consensus 214 a~~~~~------------------lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------------ 263 (377)
T KOG0153|consen 214 AGSAGT------------------LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------------ 263 (377)
T ss_pred cccccc------------------cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------------
Confidence 111111 12234456789999999889999999999999999999999531
Q ss_pred cccccCcccccccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEEeeecC
Q 009552 336 SAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRLMLRRG 386 (532)
Q Consensus 336 ~~k~~g~~~~~KG~AFVEFet~E~AekAv~~Ln~~~~~~~glrV~l~~k~~ 386 (532)
++||||+|.+.++|++|.+++-+ .+..+|.||.|.+.+.
T Consensus 264 -----------~~CAFv~ftTR~aAE~Aae~~~n-~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 264 -----------KGCAFVTFTTREAAEKAAEKSFN-KLVINGFRLKIKWGRP 302 (377)
T ss_pred -----------cccceeeehhhHHHHHHHHhhcc-eeeecceEEEEEeCCC
Confidence 56999999999999999998766 4556677888876544
No 73
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=4.6e-08 Score=103.82 Aligned_cols=78 Identities=29% Similarity=0.353 Sum_probs=68.7
Q ss_pred eEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHHcC
Q 009552 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (532)
Q Consensus 290 tVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~Ln~ 369 (532)
.|||+||+++++..+|.++|+.||+|.++++..+.. + .||| ||+|+++++|.+|++.||+
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-----------g--------~kg~-FV~f~~e~~a~~ai~~~ng 137 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-----------G--------SKGY-FVQFESEESAKKAIEKLNG 137 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-----------C--------ceee-EEEeCCHHHHHHHHHHhcC
Confidence 399999999999999999999999999999975431 1 4899 9999999999999999999
Q ss_pred CCCCCCceEEEEeeecCC
Q 009552 370 EGNWRSGLRVRLMLRRGS 387 (532)
Q Consensus 370 ~~~~~~glrV~l~~k~~~ 387 (532)
..+.++.+.|.+...+..
T Consensus 138 ~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 138 MLLNGKKIYVGLFERKEE 155 (369)
T ss_pred cccCCCeeEEeeccchhh
Confidence 999999998888765433
No 74
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.71 E-value=3e-08 Score=98.51 Aligned_cols=80 Identities=21% Similarity=0.318 Sum_probs=70.4
Q ss_pred ceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHH
Q 009552 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (532)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~L 367 (532)
...|+|.-||.++|.|+|+.+|+..|+|+++++++|+.++- +-||+||.|.+.+||++||..|
T Consensus 41 kTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGq-----------------SLGYGFVNYv~p~DAe~Aintl 103 (360)
T KOG0145|consen 41 KTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQ-----------------SLGYGFVNYVRPKDAEKAINTL 103 (360)
T ss_pred cceeeeeecccccCHHHHHHHhhcccceeeeeeeecccccc-----------------ccccceeeecChHHHHHHHhhh
Confidence 34688888999999999999999999999999999865332 2579999999999999999999
Q ss_pred cCCCCCCCceEEEEeee
Q 009552 368 NDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 368 n~~~~~~~glrV~l~~k 384 (532)
|+.++..+.|+|..+..
T Consensus 104 NGLrLQ~KTIKVSyARP 120 (360)
T KOG0145|consen 104 NGLRLQNKTIKVSYARP 120 (360)
T ss_pred cceeeccceEEEEeccC
Confidence 99999999999988754
No 75
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.70 E-value=2.7e-08 Score=104.58 Aligned_cols=73 Identities=22% Similarity=0.357 Sum_probs=62.4
Q ss_pred hhhhccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHH
Q 009552 282 DLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAE 361 (532)
Q Consensus 282 d~~~~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~Ae 361 (532)
|..+.+.-.+||+-+|..+++.||+++|++||.|..|.|++|+.++ ..||||||.|.++++|.
T Consensus 28 d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~-----------------~s~gcCFv~~~trk~a~ 90 (510)
T KOG0144|consen 28 DNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTG-----------------QSKGCCFVKYYTRKEAD 90 (510)
T ss_pred CCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccC-----------------cccceEEEEeccHHHHH
Confidence 3344456679999999999999999999999999999999886432 23899999999999999
Q ss_pred HHHHHHcCCC
Q 009552 362 KAIAELNDEG 371 (532)
Q Consensus 362 kAv~~Ln~~~ 371 (532)
+|+.+|.+..
T Consensus 91 ~a~~Alhn~k 100 (510)
T KOG0144|consen 91 EAINALHNQK 100 (510)
T ss_pred HHHHHhhccc
Confidence 9999998753
No 76
>KOG2590 consensus RNA-binding protein LARP/SRO9 and related La domain proteins [Posttranslational modification, protein turnover, chaperones; Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=3.5e-08 Score=106.02 Aligned_cols=63 Identities=25% Similarity=0.420 Sum_probs=56.7
Q ss_pred HHHHHhccccccCCCcccccHHHHhhhccCCCCceecccccchhhHHHhhhcHHHHHHhhhcCCceEEee
Q 009552 198 IQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSE 267 (532)
Q Consensus 198 ~~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dG~Vpi~~i~sFkKmK~Lt~d~~~I~eALr~S~~LeVse 267 (532)
.+.|.+|||||||.+||.+|.||+++ ||+|.+|++|+||..|+.|+++|.+||+++-+|++.-
T Consensus 301 ~~~~~~~ie~~FSeE~~~~d~~n~~k-------~~~l~~ia~F~r~ad~s~d~nli~~alr~s~ive~~~ 363 (448)
T KOG2590|consen 301 IAFIQEPIEFYFSEENLQRDRFNREK-------FVPLRVIAKFKRVADLSSDINLILAALRNSLIVEETG 363 (448)
T ss_pred ccccccccccccchHHHhhhhhhhcc-------cchhhhhhhhhhhhhcccCHHHHHHHHhhhhhhhccc
Confidence 46789999999999999999998865 9999999999999999999999999999996665543
No 77
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=98.56 E-value=1.8e-08 Score=105.12 Aligned_cols=61 Identities=25% Similarity=0.474 Sum_probs=55.1
Q ss_pred HHHHHhccccccCCCcccccHHHHhhhccCCCCceecccccchhhHHHhhhcHHHHHHhhhcC
Q 009552 198 IQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKS 260 (532)
Q Consensus 198 ~~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dG~Vpi~~i~sFkKmK~Lt~d~~~I~eALr~S 260 (532)
+..|++|||||||.+||..|.||++++++ +||||+.+|..|.|.+.+..|..+|..||+.+
T Consensus 271 I~a~k~QiEyYFseenl~~d~~lrkk~~k--aGf~plsfi~kf~Rn~Sf~gd~nLilaa~ke~ 331 (438)
T COG5193 271 IMAKKEQIEYYFSEENLKSDEFLRKKFKK--AGFIPLSFIGKFYRNLSFGGDKNLILAAMKEV 331 (438)
T ss_pred hhhHHhhhHhhhhHHhhhhhhHHHhhhhh--cccccHhhhhhhhhccccCCchhhhHHHHHHH
Confidence 45677899999999999999999999654 59999999999999999999999999988875
No 78
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.54 E-value=2.9e-07 Score=102.48 Aligned_cols=13 Identities=15% Similarity=0.023 Sum_probs=5.8
Q ss_pred CCCCCCCCCCCCC
Q 009552 97 SPHHVYPPHGTGA 109 (532)
Q Consensus 97 ~~~~~~~p~~~~~ 109 (532)
+.|-..+||||++
T Consensus 589 ~g~~Gg~ppPP~~ 601 (1102)
T KOG1924|consen 589 GGFLGGPPPPPPP 601 (1102)
T ss_pred CCCCCCCCCCCCC
Confidence 4444434444443
No 79
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.53 E-value=3.3e-07 Score=102.07 Aligned_cols=22 Identities=36% Similarity=0.771 Sum_probs=12.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC
Q 009552 80 PPAAAMVHPHPPPPHPPSPHHV 101 (532)
Q Consensus 80 pp~~~~~~~~~ppp~p~~~~~~ 101 (532)
|||+++|.+.+|||||+++|.+
T Consensus 585 PPpp~g~~Gg~ppPP~~gm~pm 606 (1102)
T KOG1924|consen 585 PPPPGGFLGGPPPPPPPGMFPM 606 (1102)
T ss_pred cCCCCCCCCCCCCCCCCCcccc
Confidence 3333555555566666666666
No 80
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.52 E-value=2.8e-07 Score=92.25 Aligned_cols=81 Identities=20% Similarity=0.268 Sum_probs=71.2
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
...+|+|.||++.++.+||++||..||.++.+-|.+++ ++.+ .|+|-|.|+..+||+.||+.
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-----------~G~s-------~Gta~v~~~r~~DA~~avk~ 143 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-----------AGRS-------LGTADVSFNRRDDAERAVKK 143 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-----------CCCC-------CccceeeecchHhHHHHHHH
Confidence 34689999999999999999999999999999998874 2332 57899999999999999999
Q ss_pred HcCCCCCCCceEEEEeeec
Q 009552 367 LNDEGNWRSGLRVRLMLRR 385 (532)
Q Consensus 367 Ln~~~~~~~glrV~l~~k~ 385 (532)
|++..++++.|++.++...
T Consensus 144 ~~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 144 YNGVALDGRPMKIEIISSP 162 (243)
T ss_pred hcCcccCCceeeeEEecCc
Confidence 9999999999998887653
No 81
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.51 E-value=9.7e-08 Score=98.55 Aligned_cols=76 Identities=22% Similarity=0.296 Sum_probs=67.2
Q ss_pred eeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHHc
Q 009552 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (532)
Q Consensus 289 rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~Ln 368 (532)
|.|||+.+.++..++.|+..|..||.|++|.|--|-.+ + ..||||||||+-.|.|+-|++.||
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T----------~-------kHKgFAFVEYEvPEaAqLAlEqMN 176 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPAT----------G-------KHKGFAFVEYEVPEAAQLALEQMN 176 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeeccccccc----------c-------cccceEEEEEeCcHHHHHHHHHhc
Confidence 67999999999999999999999999999999654221 2 248999999999999999999999
Q ss_pred CCCCCCCceEEEE
Q 009552 369 DEGNWRSGLRVRL 381 (532)
Q Consensus 369 ~~~~~~~glrV~l 381 (532)
+..+.++.|+|..
T Consensus 177 g~mlGGRNiKVgr 189 (544)
T KOG0124|consen 177 GQMLGGRNIKVGR 189 (544)
T ss_pred cccccCccccccC
Confidence 9999999998873
No 82
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.47 E-value=1.9e-07 Score=94.19 Aligned_cols=76 Identities=25% Similarity=0.236 Sum_probs=69.1
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
.+.+|+|+||...++.++|++.|.+||.|....|. |+|+||-|+-.|+|..|++.
T Consensus 77 ~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv-------------------------kdy~fvh~d~~eda~~air~ 131 (346)
T KOG0109|consen 77 ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV-------------------------KDYAFVHFDRAEDAVEAIRG 131 (346)
T ss_pred CccccccCCCCccccCHHHhhhhcccCCceeeeee-------------------------cceeEEEEeeccchHHHHhc
Confidence 45689999999999999999999999999999885 56999999999999999999
Q ss_pred HcCCCCCCCceEEEEeeecCC
Q 009552 367 LNDEGNWRSGLRVRLMLRRGS 387 (532)
Q Consensus 367 Ln~~~~~~~glrV~l~~k~~~ 387 (532)
||+.++.++.|+|.|-..+..
T Consensus 132 l~~~~~~gk~m~vq~stsrlr 152 (346)
T KOG0109|consen 132 LDNTEFQGKRMHVQLSTSRLR 152 (346)
T ss_pred ccccccccceeeeeeeccccc
Confidence 999999999999998765543
No 83
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=2.1e-07 Score=95.84 Aligned_cols=79 Identities=19% Similarity=0.248 Sum_probs=69.3
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
....|||..|..-+|.++|+-||+.||.|.++.|+++..++.+ --||||||++.|++++|+-+
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgds-----------------LqyaFiEFen~escE~AyFK 300 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDS-----------------LQYAFIEFENKESCEQAYFK 300 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccch-----------------hheeeeeecchhhHHHHHhh
Confidence 3568999999999999999999999999999999998654332 23899999999999999999
Q ss_pred HcCCCCCCCceEEEEe
Q 009552 367 LNDEGNWRSGLRVRLM 382 (532)
Q Consensus 367 Ln~~~~~~~glrV~l~ 382 (532)
|++..++.+.|.|.+-
T Consensus 301 MdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 301 MDNVLIDDRRIHVDFS 316 (479)
T ss_pred hcceeeccceEEeehh
Confidence 9999999888888874
No 84
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.44 E-value=5.1e-07 Score=88.46 Aligned_cols=79 Identities=22% Similarity=0.298 Sum_probs=68.8
Q ss_pred ceeEEEecCCCcCcHHHHHH----HhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHH
Q 009552 288 SRIVVAENLPEDHCHQNLMK----IFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (532)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~e----lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekA 363 (532)
..||||.||.+.+..++|++ ||+.||+|..|..+.. .|. +|-|||.|.+.+.|-.|
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt-------------~Km-------RGQA~VvFk~~~~As~A 68 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKT-------------PKM-------RGQAFVVFKETEAASAA 68 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCC-------------CCc-------cCceEEEecChhHHHHH
Confidence 34999999999999998887 9999999999998742 122 67899999999999999
Q ss_pred HHHHcCCCCCCCceEEEEeeecC
Q 009552 364 IAELNDEGNWRSGLRVRLMLRRG 386 (532)
Q Consensus 364 v~~Ln~~~~~~~glrV~l~~k~~ 386 (532)
++.|++..+.++.|+|..+....
T Consensus 69 ~r~l~gfpFygK~mriqyA~s~s 91 (221)
T KOG4206|consen 69 LRALQGFPFYGKPMRIQYAKSDS 91 (221)
T ss_pred HHHhcCCcccCchhheecccCcc
Confidence 99999999999999998876544
No 85
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.43 E-value=1.1e-07 Score=98.51 Aligned_cols=149 Identities=17% Similarity=0.288 Sum_probs=91.4
Q ss_pred ccccccCCCcccccHHHHhhhc---cCCCCceecccccchhhHHHhhhcHHHHHHhhhcCCceEEeeccceeeccCCCcc
Q 009552 204 QVEYYFSDLNLATTDHLIRFIL---KDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKRQNPLTE 280 (532)
Q Consensus 204 QvEyYFSD~NL~~D~fL~~~i~---kd~dG~Vpi~~i~sFkKmK~Lt~d~~~I~eALr~S~~LeVsedg~kVRR~~pl~e 280 (532)
.|.+||+..-...|..+++... +...|||.++.-. -+.++|.... + ..|++.|.-+..++.
T Consensus 22 ~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~-------------~v~~vl~~~~-h--~~dgr~ve~k~av~r 85 (311)
T KOG4205|consen 22 SLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPE-------------GVDAVLNART-H--KLDGRSVEPKRAVSR 85 (311)
T ss_pred HHHHHhcccCceeeEEEeccCCCCCcccccceecCCCc-------------chheeecccc-c--ccCCccccceeccCc
Confidence 4557888777777776665422 2245555544322 2223332221 1 123333322222222
Q ss_pred hhhhh----ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCC
Q 009552 281 SDLEE----LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES 356 (532)
Q Consensus 281 ~d~~~----~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet 356 (532)
.+..+ ...+.|||++|+.++++++|++.|++||.|..+-|++|..+. ..++|+||+|++
T Consensus 86 ~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~-----------------~~rgFgfv~~~~ 148 (311)
T KOG4205|consen 86 EDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTS-----------------RPRGFGFVTFDS 148 (311)
T ss_pred ccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeeccccc-----------------ccccceeeEecc
Confidence 21111 135689999999999999999999999999999998876422 237899999999
Q ss_pred HHHHHHHHHHHcCCCCCCCceEEEEeeecC
Q 009552 357 VELAEKAIAELNDEGNWRSGLRVRLMLRRG 386 (532)
Q Consensus 357 ~E~AekAv~~Ln~~~~~~~glrV~l~~k~~ 386 (532)
.+.+++++. ..-..+.++.+.|..+..+.
T Consensus 149 e~sVdkv~~-~~f~~~~gk~vevkrA~pk~ 177 (311)
T KOG4205|consen 149 EDSVDKVTL-QKFHDFNGKKVEVKRAIPKE 177 (311)
T ss_pred ccccceecc-cceeeecCceeeEeeccchh
Confidence 999999876 33334445555555555443
No 86
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.42 E-value=3.3e-07 Score=99.08 Aligned_cols=81 Identities=20% Similarity=0.249 Sum_probs=70.4
Q ss_pred EEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHHcCC
Q 009552 291 VVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDE 370 (532)
Q Consensus 291 VyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~Ln~~ 370 (532)
|||+||..++++++|+.+|+.||.|..|.+.++- +++. +|||+||+|...|+|.+|++.||+.
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~----------~tG~-------skgfGfi~f~~~~~ar~a~e~lngf 343 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDS----------ETGR-------SKGFGFITFVNKEDARKALEQLNGF 343 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeecccc----------cccc-------ccCcceEEEecHHHHHHHHHHhccc
Confidence 9999999999999999999999999999986653 2222 3889999999999999999999998
Q ss_pred CCCCCceEEEEeeecCCC
Q 009552 371 GNWRSGLRVRLMLRRGSK 388 (532)
Q Consensus 371 ~~~~~glrV~l~~k~~~k 388 (532)
.+-++-|+|.+...+...
T Consensus 344 elAGr~ikV~~v~~r~~~ 361 (549)
T KOG0147|consen 344 ELAGRLIKVSVVTERVDT 361 (549)
T ss_pred eecCceEEEEEeeeeccc
Confidence 888999999887765543
No 87
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.41 E-value=4.4e-07 Score=95.63 Aligned_cols=75 Identities=28% Similarity=0.264 Sum_probs=66.0
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
.++|+|||+|||.++|++-|++-|.+||.|+.+.|+.. +|. | ..|.|.+.|+||.|+.
T Consensus 534 rKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~-------------Gks-------k--GVVrF~s~edAEra~a 591 (608)
T KOG4212|consen 534 RKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMEN-------------GKS-------K--GVVRFFSPEDAERACA 591 (608)
T ss_pred ccccEEEEecCCccccHHHHHHHHHhccceehhhhhcc-------------CCc-------c--ceEEecCHHHHHHHHH
Confidence 46789999999999999999999999999999998532 222 3 3899999999999999
Q ss_pred HHcCCCCCCCceEEEEe
Q 009552 366 ELNDEGNWRSGLRVRLM 382 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l~ 382 (532)
.||+..+.++.|+|+++
T Consensus 592 ~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 592 LMNGSRLDGRNIKVTYF 608 (608)
T ss_pred HhccCcccCceeeeeeC
Confidence 99999999999999863
No 88
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.40 E-value=2.8e-07 Score=93.06 Aligned_cols=70 Identities=26% Similarity=0.275 Sum_probs=62.5
Q ss_pred eEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHHcC
Q 009552 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (532)
Q Consensus 290 tVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~Ln~ 369 (532)
.|||+|||.++++.+|+.||++||+|....|+ |.|+||-.|+...|+.||..|++
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv-------------------------KNYgFVHiEdktaaedairNLhg 58 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIV-------------------------KNYGFVHIEDKTAAEDAIRNLHG 58 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeee-------------------------cccceEEeecccccHHHHhhccc
Confidence 48999999999999999999999999999985 66999999999999999999999
Q ss_pred CCCCCCceEEEEeee
Q 009552 370 EGNWRSGLRVRLMLR 384 (532)
Q Consensus 370 ~~~~~~glrV~l~~k 384 (532)
-.+.+..|+|+....
T Consensus 59 YtLhg~nInVeaSks 73 (346)
T KOG0109|consen 59 YTLHGVNINVEASKS 73 (346)
T ss_pred ceecceEEEEEeccc
Confidence 888777777765443
No 89
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.37 E-value=6.4e-07 Score=99.23 Aligned_cols=80 Identities=21% Similarity=0.248 Sum_probs=67.2
Q ss_pred eEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHHcC
Q 009552 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (532)
Q Consensus 290 tVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~Ln~ 369 (532)
+|||+||.+++|.++|+.+|+..|.|.+|.|..-+.. +. .+-+.||+||||.+.|+|+.|++.|++
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~--------~~------k~lSmGfgFVEF~~~e~A~~a~k~lqg 582 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDP--------AN------KYLSMGFGFVEFAKPESAQAALKALQG 582 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccc--------cc------cccccceeEEEecCHHHHHHHHHHhcC
Confidence 3999999999999999999999999999998542110 10 122479999999999999999999999
Q ss_pred CCCCCCceEEEEee
Q 009552 370 EGNWRSGLRVRLML 383 (532)
Q Consensus 370 ~~~~~~glrV~l~~ 383 (532)
..+.+..|.|.+..
T Consensus 583 tvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 583 TVLDGHKLELKISE 596 (725)
T ss_pred ceecCceEEEEecc
Confidence 99998888888776
No 90
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.34 E-value=1.2e-06 Score=84.74 Aligned_cols=81 Identities=25% Similarity=0.351 Sum_probs=66.8
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhc-CCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAV-GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~f-G~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
..--+||..+|..+.+.+|..+|..| |.|..+|+-|-+ |+|. +||||||||++.|.|+=|.+
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnk----------rTGN-------SKgYAFVEFEs~eVA~IaAE 110 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNK----------RTGN-------SKGYAFVEFESEEVAKIAAE 110 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeeccc----------ccCC-------cCceEEEEeccHHHHHHHHH
Confidence 34568999999999999999999998 788888885432 3333 38999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeee
Q 009552 366 ELNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~k 384 (532)
.||+-.+.+.-|.+.++-.
T Consensus 111 TMNNYLl~e~lL~c~vmpp 129 (214)
T KOG4208|consen 111 TMNNYLLMEHLLECHVMPP 129 (214)
T ss_pred HhhhhhhhhheeeeEEeCc
Confidence 9999988888788877754
No 91
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.32 E-value=1.2e-06 Score=87.49 Aligned_cols=86 Identities=21% Similarity=0.206 Sum_probs=72.3
Q ss_pred hhhhccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHH
Q 009552 282 DLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAE 361 (532)
Q Consensus 282 d~~~~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~Ae 361 (532)
..++++.+.|||+|+...+|.++|+..|+.||.|+.|.|..++..+ ..||||||||.+.+.++
T Consensus 95 ~~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~-----------------~~k~~~yvef~~~~~~~ 157 (231)
T KOG4209|consen 95 RQKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRG-----------------HPKGFAYVEFSSYELVE 157 (231)
T ss_pred hhhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCC-----------------CcceeEEEecccHhhhH
Confidence 3456788999999999999999999999999999999987664321 13889999999999999
Q ss_pred HHHHHHcCCCCCCCceEEEEeeec
Q 009552 362 KAIAELNDEGNWRSGLRVRLMLRR 385 (532)
Q Consensus 362 kAv~~Ln~~~~~~~glrV~l~~k~ 385 (532)
+|++ ||+..+.+..+.|.....+
T Consensus 158 ~ay~-l~gs~i~~~~i~vt~~r~~ 180 (231)
T KOG4209|consen 158 EAYK-LDGSEIPGPAIEVTLKRTN 180 (231)
T ss_pred HHhh-cCCcccccccceeeeeeee
Confidence 9998 9999888877777665543
No 92
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.29 E-value=1.3e-06 Score=92.95 Aligned_cols=139 Identities=26% Similarity=0.275 Sum_probs=98.2
Q ss_pred hhccCCCCceecccccchhhHHHhhhcHHHHHHhhhcCCceEEeeccceeeccCCCcchhhhhccceeEEEecCCCcCcH
Q 009552 223 FILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDHCH 302 (532)
Q Consensus 223 ~i~kd~dG~Vpi~~i~sFkKmK~Lt~d~~~I~eALr~S~~LeVsedg~kVRR~~pl~e~d~~~~~~rtVyV~nLP~d~t~ 302 (532)
++..+.+| +.-. ++.|..-....+.++.+-.-|-....|.|.....+--|..++.+ .. .....|||+++..+++.
T Consensus 107 kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~~-~~--~~~t~v~vk~~~~~~~~ 181 (369)
T KOG0123|consen 107 KVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAPLGE-YK--KRFTNVYVKNLEEDSTD 181 (369)
T ss_pred EEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhcccccc-hh--hhhhhhheeccccccch
Confidence 35566777 5545 77777666655555555555555555666544333333334433 21 23457999999999999
Q ss_pred HHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEEe
Q 009552 303 QNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRLM 382 (532)
Q Consensus 303 edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~Ln~~~~~~~glrV~l~ 382 (532)
+.|.++|+.||.|.++.++.+.. ++ +++|+||+|++.|+|++|++.|++....+..+.|...
T Consensus 182 ~~l~~~f~~~g~i~s~~v~~~~~-----------g~-------~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~a 243 (369)
T KOG0123|consen 182 EELKDLFSAYGSITSVAVMRDSI-----------GK-------SKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRA 243 (369)
T ss_pred HHHHHhhcccCcceEEEEeecCC-----------CC-------CCCccceeecChhHHHHHHHhccCCcCCccceeeccc
Confidence 99999999999999999975421 11 3789999999999999999999998877666666655
Q ss_pred ee
Q 009552 383 LR 384 (532)
Q Consensus 383 ~k 384 (532)
.+
T Consensus 244 qk 245 (369)
T KOG0123|consen 244 QK 245 (369)
T ss_pred cc
Confidence 54
No 93
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.19 E-value=3.2e-06 Score=80.59 Aligned_cols=83 Identities=22% Similarity=0.307 Sum_probs=68.5
Q ss_pred eeEEEecCCCcCcHHHHHHHhhhcCCeeEE-EEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHH
Q 009552 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTI-RTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (532)
Q Consensus 289 rtVyV~nLP~d~t~edL~elFs~fG~V~~V-ri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~L 367 (532)
..|||+||..++++.-|-++|+.||.|... .|+++..++ ..++|+||.|++.|.+.+|++.+
T Consensus 97 anlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg-----------------~~~~~g~i~~~sfeasd~ai~s~ 159 (203)
T KOG0131|consen 97 ANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTG-----------------NPKGFGFINYASFEASDAAIGSM 159 (203)
T ss_pred ccccccccCcchhHHHHHHHHHhccccccCCcccccccCC-----------------CCCCCeEEechhHHHHHHHHHHh
Confidence 579999999999999999999999987543 455543221 12789999999999999999999
Q ss_pred cCCCCCCCceEEEEeeecCCC
Q 009552 368 NDEGNWRSGLRVRLMLRRGSK 388 (532)
Q Consensus 368 n~~~~~~~glrV~l~~k~~~k 388 (532)
|+..+..+.+.|..+.++..|
T Consensus 160 ngq~l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 160 NGQYLCNRPITVSYAFKKDTK 180 (203)
T ss_pred ccchhcCCceEEEEEEecCCC
Confidence 999999999999998765444
No 94
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.17 E-value=4.7e-06 Score=92.55 Aligned_cols=78 Identities=21% Similarity=0.385 Sum_probs=63.4
Q ss_pred ceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHH
Q 009552 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (532)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~L 367 (532)
..-|+|+|||+.++..+|++||..||.|++||| |+ +.++ ...+|||||+|-+..+|.+|++.|
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRl--PK----------K~~k-----~a~rGF~Fv~f~t~~ea~nA~~al 675 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRL--PK----------KIGK-----GAHRGFGFVDFLTPREAKNAFDAL 675 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeecc--ch----------hhcc-----hhhccceeeeccCcHHHHHHHHhh
Confidence 457999999999999999999999999999998 22 1111 234789999999999999999999
Q ss_pred cCCCCCCCceEEEEe
Q 009552 368 NDEGNWRSGLRVRLM 382 (532)
Q Consensus 368 n~~~~~~~glrV~l~ 382 (532)
-..-+.++-|-+.++
T Consensus 676 ~STHlyGRrLVLEwA 690 (725)
T KOG0110|consen 676 GSTHLYGRRLVLEWA 690 (725)
T ss_pred cccceechhhheehh
Confidence 977777765544443
No 95
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.17 E-value=2e-06 Score=86.04 Aligned_cols=83 Identities=19% Similarity=0.303 Sum_probs=71.1
Q ss_pred hhccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHH
Q 009552 284 EELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (532)
Q Consensus 284 ~~~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekA 363 (532)
+..+.|.|||--||.+....||..+|-.||.|.+.++.-|+.++- +|.|+||.|++..+|+.|
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQ-----------------SKCFGFVSfDNp~SaQaA 343 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQ-----------------SKCFGFVSFDNPASAQAA 343 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhcccc-----------------ccceeeEecCCchhHHHH
Confidence 445789999999999999999999999999999999987765432 378999999999999999
Q ss_pred HHHHcCCCCCCCceEEEEee
Q 009552 364 IAELNDEGNWRSGLRVRLML 383 (532)
Q Consensus 364 v~~Ln~~~~~~~glrV~l~~ 383 (532)
|..||+-.+.-+.|||.|..
T Consensus 344 IqAMNGFQIGMKRLKVQLKR 363 (371)
T KOG0146|consen 344 IQAMNGFQIGMKRLKVQLKR 363 (371)
T ss_pred HHHhcchhhhhhhhhhhhcC
Confidence 99999988877767666543
No 96
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.15 E-value=1.5e-06 Score=94.23 Aligned_cols=72 Identities=28% Similarity=0.446 Sum_probs=61.6
Q ss_pred hccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHH
Q 009552 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (532)
Q Consensus 285 ~~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv 364 (532)
+...++|+|-|||..++.++|..+|+.||+|+.|+.-. + ..+.+||||-++-+|+.|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~-------------~---------~~~~~~v~FyDvR~A~~Al 129 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP-------------N---------KRGIVFVEFYDVRDAERAL 129 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc-------------c---------cCceEEEEEeehHhHHHHH
Confidence 56789999999999999999999999999999987621 1 1568999999999999999
Q ss_pred HHHcCCCCCCCceE
Q 009552 365 AELNDEGNWRSGLR 378 (532)
Q Consensus 365 ~~Ln~~~~~~~glr 378 (532)
++||...+.++-|+
T Consensus 130 k~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 130 KALNRREIAGKRIK 143 (549)
T ss_pred HHHHHHHhhhhhhc
Confidence 99998776665444
No 97
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.11 E-value=2.9e-05 Score=84.38 Aligned_cols=79 Identities=22% Similarity=0.234 Sum_probs=64.8
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
..|.|||.+|...+.--+|+.||++||.|.-..++.. .++.| .+.|+||++.+.++|.+||+.
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTN-------------aRsPG----aRCYGfVTMSts~eAtkCI~h 466 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTN-------------ARSPG----ARCYGFVTMSTSAEATKCIEH 466 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeec-------------CCCCC----cceeEEEEecchHHHHHHHHH
Confidence 4688999999988889999999999999988887632 12222 267999999999999999999
Q ss_pred HcCCCCCCCceEEEEe
Q 009552 367 LNDEGNWRSGLRVRLM 382 (532)
Q Consensus 367 Ln~~~~~~~glrV~l~ 382 (532)
|....+.++-|.|.-+
T Consensus 467 LHrTELHGrmISVEka 482 (940)
T KOG4661|consen 467 LHRTELHGRMISVEKA 482 (940)
T ss_pred hhhhhhcceeeeeeec
Confidence 9988888876666644
No 98
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.02 E-value=2.3e-06 Score=83.64 Aligned_cols=80 Identities=16% Similarity=0.128 Sum_probs=68.5
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
..|||||.||-+.+++|-|.|+|-..|.|..|.|..++ .++ .| ||||+|+++-...-|++.
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-----------d~~-------~k-Fa~v~f~~E~sv~~a~~L 68 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-----------DQE-------QK-FAYVFFPNENSVQLAGQL 68 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-----------cCC-------Cc-eeeeecccccchhhhhhh
Confidence 35899999999999999999999999999999884332 222 24 899999999999999999
Q ss_pred HcCCCCCCCceEEEEeeec
Q 009552 367 LNDEGNWRSGLRVRLMLRR 385 (532)
Q Consensus 367 Ln~~~~~~~glrV~l~~k~ 385 (532)
+|+..++.+.++|.+.+..
T Consensus 69 ~ng~~l~~~e~q~~~r~G~ 87 (267)
T KOG4454|consen 69 ENGDDLEEDEEQRTLRCGN 87 (267)
T ss_pred cccchhccchhhcccccCC
Confidence 9999999999988887654
No 99
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.01 E-value=5.7e-06 Score=81.48 Aligned_cols=62 Identities=19% Similarity=0.278 Sum_probs=56.0
Q ss_pred eEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHHcC
Q 009552 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (532)
Q Consensus 290 tVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~Ln~ 369 (532)
.|||++|++.+.+.+|++||.+||.|..|.|. .||+||+|++.-+|+.||-.||+
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-------------------------~gf~fv~fed~rda~Dav~~l~~ 57 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMK-------------------------NGFGFVEFEDPRDADDAVHDLDG 57 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceee-------------------------cccceeccCchhhhhcccchhcC
Confidence 58999999999999999999999999999882 45899999999999999999998
Q ss_pred CCCCCCc
Q 009552 370 EGNWRSG 376 (532)
Q Consensus 370 ~~~~~~g 376 (532)
..+.+..
T Consensus 58 ~~l~~e~ 64 (216)
T KOG0106|consen 58 KELCGER 64 (216)
T ss_pred ceeccee
Confidence 8776654
No 100
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.90 E-value=1.4e-05 Score=82.57 Aligned_cols=88 Identities=23% Similarity=0.172 Sum_probs=62.0
Q ss_pred hhccceeEEEecCCCcCcHHHHHHHhhhcCCeeEE-EEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHH
Q 009552 284 EELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTI-RTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (532)
Q Consensus 284 ~~~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~V-ri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~Aek 362 (532)
+......|||.|||.|+|.+++.++|++||-|..- +.-.+ ..+.++.+ ...-||-|++.|-..|+++-
T Consensus 130 ~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~ep---------k~KlYrd~--~G~lKGDaLc~y~K~ESVeL 198 (382)
T KOG1548|consen 130 EPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEP---------KVKLYRDN--QGKLKGDALCCYIKRESVEL 198 (382)
T ss_pred ccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCe---------eEEEEecC--CCCccCceEEEeecccHHHH
Confidence 34456679999999999999999999999976421 11111 01111111 11227889999999999999
Q ss_pred HHHHHcCCCCCCCceEEEEe
Q 009552 363 AIAELNDEGNWRSGLRVRLM 382 (532)
Q Consensus 363 Av~~Ln~~~~~~~glrV~l~ 382 (532)
|++.|++..+.+..|+|..+
T Consensus 199 A~~ilDe~~~rg~~~rVerA 218 (382)
T KOG1548|consen 199 AIKILDEDELRGKKLRVERA 218 (382)
T ss_pred HHHHhCcccccCcEEEEehh
Confidence 99999988777666666654
No 101
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=97.84 E-value=5.1e-05 Score=78.87 Aligned_cols=77 Identities=21% Similarity=0.227 Sum_probs=62.0
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
+-..|||..+..|.+++||+.+|+.||+|+.+.+.+..+ ....|||+||||++......||..
T Consensus 209 ~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt-----------------~~~HkGyGfiEy~n~qs~~eAias 271 (544)
T KOG0124|consen 209 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPT-----------------GRGHKGYGFIEYNNLQSQSEAIAS 271 (544)
T ss_pred hhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCC-----------------CCCccceeeEEeccccchHHHhhh
Confidence 345899999999999999999999999999999976421 113489999999999999999999
Q ss_pred HcCCCCCCCceEEE
Q 009552 367 LNDEGNWRSGLRVR 380 (532)
Q Consensus 367 Ln~~~~~~~glrV~ 380 (532)
||--.+.+.=|||.
T Consensus 272 MNlFDLGGQyLRVG 285 (544)
T KOG0124|consen 272 MNLFDLGGQYLRVG 285 (544)
T ss_pred cchhhcccceEecc
Confidence 98554444445444
No 102
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.84 E-value=6.5e-05 Score=66.33 Aligned_cols=59 Identities=22% Similarity=0.363 Sum_probs=40.0
Q ss_pred eeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHHc
Q 009552 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (532)
Q Consensus 289 rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~Ln 368 (532)
+.|.|.++..+++.++|+++|+.||.|..|.+.+. -..|||-|.+.++|++|++.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G-----------------------~~~g~VRf~~~~~A~~a~~~~~ 58 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG-----------------------DTEGYVRFKTPEAAQKALEKLK 58 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT------------------------SEEEEEESS---HHHHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC-----------------------CCEEEEEECCcchHHHHHHHHH
Confidence 57899999999999999999999999999988431 1269999999999999999887
Q ss_pred CC
Q 009552 369 DE 370 (532)
Q Consensus 369 ~~ 370 (532)
..
T Consensus 59 ~~ 60 (105)
T PF08777_consen 59 EA 60 (105)
T ss_dssp HT
T ss_pred hc
Confidence 65
No 103
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=97.81 E-value=1.9e-05 Score=79.15 Aligned_cols=80 Identities=19% Similarity=0.221 Sum_probs=64.7
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
-+.|.|||+=|...-++||++.+|..||.|..+.+++-. ....||||||.|.+--||+.||.
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~------------------dg~sKGCAFVKf~s~~eAqaAI~ 78 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP------------------DGNSKGCAFVKFSSHAEAQAAIN 78 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC------------------CCCCCCceEEEeccchHHHHHHH
Confidence 367889999999999999999999999999999987531 22358999999999999999999
Q ss_pred HHcCCCCCCC---ceEEEEee
Q 009552 366 ELNDEGNWRS---GLRVRLML 383 (532)
Q Consensus 366 ~Ln~~~~~~~---glrV~l~~ 383 (532)
.|.+...... .|-|+++.
T Consensus 79 aLHgSqTmpGASSSLVVK~AD 99 (371)
T KOG0146|consen 79 ALHGSQTMPGASSSLVVKFAD 99 (371)
T ss_pred HhcccccCCCCccceEEEecc
Confidence 9998654322 35555544
No 104
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=97.78 E-value=2e-05 Score=81.84 Aligned_cols=62 Identities=19% Similarity=0.296 Sum_probs=53.6
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
+.+.|||++|.+++++|.|++.|+.||+|..+.|+++..++ | .+||+||+|++.+....+|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~-------r----------srgFgfv~f~~~~~v~~vl~ 66 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTG-------R----------SRGFGFVTFATPEGVDAVLN 66 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCC-------C----------cccccceecCCCcchheeec
Confidence 57899999999999999999999999999999998875432 1 27899999999888887765
No 105
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.77 E-value=0.00013 Score=71.80 Aligned_cols=80 Identities=20% Similarity=0.214 Sum_probs=58.7
Q ss_pred ceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHH
Q 009552 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (532)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~L 367 (532)
-|||||.+||.|+..-+|-.+|..|=--+..-|.+. .|.++. .|-+|||+|.+..+|+.|+++|
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~T----------sk~~~~------~~pvaFatF~s~q~A~aamnaL 97 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYT----------SKGDQV------CKPVAFATFTSHQFALAAMNAL 97 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeec----------cCCCcc------ccceEEEEecchHHHHHHHHHh
Confidence 589999999999999999999998743333333221 011111 1568999999999999999999
Q ss_pred cCCCCCCC---ceEEEEee
Q 009552 368 NDEGNWRS---GLRVRLML 383 (532)
Q Consensus 368 n~~~~~~~---glrV~l~~ 383 (532)
|+..++-. .|+|+++.
T Consensus 98 NGvrFDpE~~stLhiElAK 116 (284)
T KOG1457|consen 98 NGVRFDPETGSTLHIELAK 116 (284)
T ss_pred cCeeeccccCceeEeeehh
Confidence 99877643 46666654
No 106
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.71 E-value=7e-05 Score=73.63 Aligned_cols=161 Identities=17% Similarity=0.204 Sum_probs=97.4
Q ss_pred HHHHHhccccccCCCcccccHHHHhhhccCCCCceecccccch-hhHHHhhh-----cHHHHHHhhhcCCceE-----Ee
Q 009552 198 IQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASF-KKIKAIIS-----SHSHLASVLRKSSKLV-----VS 266 (532)
Q Consensus 198 ~~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dG~Vpi~~i~sF-kKmK~Lt~-----d~~~I~eALr~S~~Le-----Vs 266 (532)
.++++++|.-.||..-=+-|--.++..++.++-||.++-+.+- .-+++|.. ..-.|..|..+|..++ +.
T Consensus 23 ~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~sdii~~~~~~~v 102 (221)
T KOG4206|consen 23 KDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSDSDIIAQAPGTFV 102 (221)
T ss_pred HHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccCccchhhccCceec
Confidence 4556777777777655333333344445667778877764433 33343322 1234555555554332 11
Q ss_pred eccce-----eecc-CCCcch----------------hhhhccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCC
Q 009552 267 EDGKK-----IKRQ-NPLTES----------------DLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQ 324 (532)
Q Consensus 267 edg~k-----VRR~-~pl~e~----------------d~~~~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~ 324 (532)
+..++ +++. .+.... +.......++|+.|||.+++.+.|+.+|..|.-.+.||++...
T Consensus 103 ~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~ 182 (221)
T KOG4206|consen 103 EKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR 182 (221)
T ss_pred cccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC
Confidence 11111 1110 110000 1113356799999999999999999999999999999997431
Q ss_pred CCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHHcCCCCC-CCceEEE
Q 009552 325 TSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNW-RSGLRVR 380 (532)
Q Consensus 325 ~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~Ln~~~~~-~~glrV~ 380 (532)
++.|||||.+...|.-|...|.+-.+. ...|+|.
T Consensus 183 ----------------------~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~ 217 (221)
T KOG4206|consen 183 ----------------------SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQIT 217 (221)
T ss_pred ----------------------CceeEEecchhhhhHHHhhhhccceeccCceEEec
Confidence 568999999999989998888766544 3334444
No 107
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.63 E-value=0.00035 Score=59.23 Aligned_cols=67 Identities=19% Similarity=0.335 Sum_probs=46.9
Q ss_pred eeEEEecCCCcCcHH----HHHHHhhhcC-CeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHH
Q 009552 289 RIVVAENLPEDHCHQ----NLMKIFSAVG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (532)
Q Consensus 289 rtVyV~nLP~d~t~e----dL~elFs~fG-~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekA 363 (532)
..|||.|||.+.+.. -|+.|+.-|| .|..|. .+.|+|-|.+.|.|++|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~---------------------------~~tAilrF~~~~~A~RA 55 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS---------------------------GGTAILRFPNQEFAERA 55 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------------------------TT-EEEEESSHHHHHHH
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe---------------------------CCEEEEEeCCHHHHHHH
Confidence 469999999988755 4778888997 555542 34799999999999999
Q ss_pred HHHHcCCCCCCCceEEEEe
Q 009552 364 IAELNDEGNWRSGLRVRLM 382 (532)
Q Consensus 364 v~~Ln~~~~~~~glrV~l~ 382 (532)
.+.|+++.-+++.|.|.+.
T Consensus 56 ~KRmegEdVfG~kI~v~~~ 74 (90)
T PF11608_consen 56 QKRMEGEDVFGNKISVSFS 74 (90)
T ss_dssp HHHHTT--SSSS--EEESS
T ss_pred HHhhcccccccceEEEEEc
Confidence 9999999999988887754
No 108
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.49 E-value=0.00012 Score=81.51 Aligned_cols=100 Identities=20% Similarity=0.269 Sum_probs=74.6
Q ss_pred ccceeeccCCCcch----------hhhhccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcc
Q 009552 268 DGKKIKRQNPLTES----------DLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSA 337 (532)
Q Consensus 268 dg~kVRR~~pl~e~----------d~~~~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~ 337 (532)
|...+.|..++++. |.-+.+...|||+||+..++++.|...|..||.|.+|+|+.+++-.- |
T Consensus 144 d~~~s~r~~~~p~~~~~s~~~gsfDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeE------k-- 215 (877)
T KOG0151|consen 144 DSAVSSRFDPLPSRFDPSGRPGSFDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEE------K-- 215 (877)
T ss_pred CcchhhccCCCccccCCCCCCCcCCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhh------h--
Confidence 34445666655532 22234567899999999999999999999999999999999875221 1
Q ss_pred cccCcccccccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEE
Q 009552 338 KSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRL 381 (532)
Q Consensus 338 k~~g~~~~~KG~AFVEFet~E~AekAv~~Ln~~~~~~~glrV~l 381 (532)
-+...|+||.|-+..||+.|+++|++.......|++.+
T Consensus 216 ------~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gW 253 (877)
T KOG0151|consen 216 ------RRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGW 253 (877)
T ss_pred ------ccccccceeeehhhhhHHHHHHHhcceeeeeeeeeecc
Confidence 12256999999999999999999998766555554443
No 109
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.49 E-value=0.00021 Score=77.02 Aligned_cols=58 Identities=24% Similarity=0.353 Sum_probs=46.4
Q ss_pred eeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 289 rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
.-|-+++||+.+|++||.+||+-|+ |.++.+.+. ++|. .|-|||||+++|++++|+|+
T Consensus 11 ~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~------------~Gr~-------sGeA~Ve~~seedv~~Alkk 68 (510)
T KOG4211|consen 11 FEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR------------NGRP-------SGEAYVEFTSEEDVEKALKK 68 (510)
T ss_pred eEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc------------CCCc-------CcceEEEeechHHHHHHHHh
Confidence 4566799999999999999999995 677665331 2332 56799999999999999983
No 110
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.40 E-value=7.6e-05 Score=81.15 Aligned_cols=81 Identities=28% Similarity=0.305 Sum_probs=67.9
Q ss_pred hhhccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHH
Q 009552 283 LEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (532)
Q Consensus 283 ~~~~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~Aek 362 (532)
.++.+.||||+--|....+.-+|++||+.+|.|..|+|+.|+.+. ..||-|||||.+.+....
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~-----------------rskgi~Yvef~D~~sVp~ 236 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSR-----------------RSKGIAYVEFCDEQSVPL 236 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccch-----------------hhcceeEEEEecccchhh
Confidence 356678999999999999999999999999999999999876421 238899999999999999
Q ss_pred HHHHHcCCCCCCCceEEEE
Q 009552 363 AIAELNDEGNWRSGLRVRL 381 (532)
Q Consensus 363 Av~~Ln~~~~~~~glrV~l 381 (532)
||. |.+..+.+-.+.|.+
T Consensus 237 aia-LsGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 237 AIA-LSGQRLLGVPVIVQL 254 (549)
T ss_pred Hhh-hcCCcccCceeEecc
Confidence 994 998887776666554
No 111
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.38 E-value=0.0005 Score=72.67 Aligned_cols=73 Identities=22% Similarity=0.341 Sum_probs=63.5
Q ss_pred ceeEEEecCCC-cCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 288 SRIVVAENLPE-DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 288 ~rtVyV~nLP~-d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
...|.|.||-+ -+|.+.|--+|+.||+|.+|.|++.+ |..|+|.|.+...|+-|++.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk----------------------kd~ALIQmsd~~qAqLA~~h 354 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK----------------------KDNALIQMSDGQQAQLAMEH 354 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC----------------------CcceeeeecchhHHHHHHHH
Confidence 36788899875 57999999999999999999998632 34799999999999999999
Q ss_pred HcCCCCCCCceEEEEe
Q 009552 367 LNDEGNWRSGLRVRLM 382 (532)
Q Consensus 367 Ln~~~~~~~glrV~l~ 382 (532)
|++..+|++.|||.+-
T Consensus 355 L~g~~l~gk~lrvt~S 370 (492)
T KOG1190|consen 355 LEGHKLYGKKLRVTLS 370 (492)
T ss_pred hhcceecCceEEEeec
Confidence 9999999988887764
No 112
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.37 E-value=0.00029 Score=75.92 Aligned_cols=74 Identities=26% Similarity=0.330 Sum_probs=50.7
Q ss_pred ceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHH
Q 009552 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (532)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~L 367 (532)
.-.|-+++||+.+|++||.+||+..--| .+-|..+ .+.| ++ ..|-|||.|++.|.|++|+...
T Consensus 103 d~vVRLRGLPfscte~dI~~FFaGL~Iv-~~gi~l~--------~d~r-gR-------~tGEAfVqF~sqe~ae~Al~rh 165 (510)
T KOG4211|consen 103 DGVVRLRGLPFSCTEEDIVEFFAGLEIV-PDGILLP--------MDQR-GR-------PTGEAFVQFESQESAEIALGRH 165 (510)
T ss_pred CceEEecCCCccCcHHHHHHHhcCCccc-ccceeee--------ccCC-CC-------cccceEEEecCHHHHHHHHHHH
Confidence 4578889999999999999999986433 3333222 1222 22 2567999999999999999854
Q ss_pred cCCCCCCCceEE
Q 009552 368 NDEGNWRSGLRV 379 (532)
Q Consensus 368 n~~~~~~~glrV 379 (532)
. +.+..+-|.|
T Consensus 166 r-e~iGhRYIEv 176 (510)
T KOG4211|consen 166 R-ENIGHRYIEV 176 (510)
T ss_pred H-HhhccceEEe
Confidence 3 3444444443
No 113
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.37 E-value=0.00015 Score=71.24 Aligned_cols=61 Identities=20% Similarity=0.318 Sum_probs=50.1
Q ss_pred eeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHHc
Q 009552 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (532)
Q Consensus 289 rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~Ln 368 (532)
.||||-||..++|+++|+.+|+.|--...++|+- |.+ ...|||+|++.|.|..|+..|.
T Consensus 211 stlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~------------~~g---------~~vaf~~~~~~~~at~am~~lq 269 (284)
T KOG1457|consen 211 STLFIANLGPNCTEDELKQLLSRYPGFHILKIRA------------RGG---------MPVAFADFEEIEQATDAMNHLQ 269 (284)
T ss_pred hhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec------------CCC---------cceEeecHHHHHHHHHHHHHhh
Confidence 4899999999999999999999998777777742 111 2369999999999999998887
Q ss_pred CC
Q 009552 369 DE 370 (532)
Q Consensus 369 ~~ 370 (532)
+.
T Consensus 270 g~ 271 (284)
T KOG1457|consen 270 GN 271 (284)
T ss_pred cc
Confidence 54
No 114
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.35 E-value=0.0002 Score=74.66 Aligned_cols=91 Identities=20% Similarity=0.235 Sum_probs=70.7
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
..-||||.+|+..+|+++|.++|.+||.|+.=+ .+.+. .+..++.+ .+...|+-|.|.|++.-.|+.||..
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK-----~t~kP---ki~~y~dk-eT~~~KGeatvS~~D~~~akaai~~ 135 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNK-----RTGKP---KIKIYTDK-ETGAPKGEATVSYEDPPAAKAAIEW 135 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCC-----CCCCc---chhccccc-cccCcCCceeeeecChhhhhhhhhh
Confidence 456999999999999999999999999875432 22111 11122222 3345688999999999999999999
Q ss_pred HcCCCCCCCceEEEEeeecC
Q 009552 367 LNDEGNWRSGLRVRLMLRRG 386 (532)
Q Consensus 367 Ln~~~~~~~glrV~l~~k~~ 386 (532)
++...+.++.|+|.++.++.
T Consensus 136 ~agkdf~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 136 FAGKDFCGNTIKVSLAERRT 155 (351)
T ss_pred hccccccCCCchhhhhhhcc
Confidence 99999999999999988766
No 115
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.28 E-value=0.00061 Score=52.81 Aligned_cols=52 Identities=21% Similarity=0.406 Sum_probs=41.8
Q ss_pred eeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHH
Q 009552 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (532)
Q Consensus 289 rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv 364 (532)
+.|.|.|++.+.. +.|.+.|+.||+|..+.+- . .+.+.||.|++..+|++||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~--~---------------------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVP--E---------------------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcC--C---------------------CCcEEEEEECCHHHHHhhC
Confidence 6789999986654 5667799999999998872 0 1348999999999999995
No 116
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.19 E-value=0.0002 Score=70.74 Aligned_cols=69 Identities=23% Similarity=0.283 Sum_probs=58.3
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
...+.|+|.+|..++.+++|++.|..+|.+..+.+. .+++||+|++.++|.+|+.
T Consensus 97 ~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~-------------------------~~~~~v~Fs~~~da~ra~~ 151 (216)
T KOG0106|consen 97 RTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR-------------------------RNFAFVEFSEQEDAKRALE 151 (216)
T ss_pred cccceeeeccchhhhhHHHHhhhhcccCCCchhhhh-------------------------ccccceeehhhhhhhhcch
Confidence 345678999999999999999999999998554431 4579999999999999999
Q ss_pred HHcCCCCCCCceEE
Q 009552 366 ELNDEGNWRSGLRV 379 (532)
Q Consensus 366 ~Ln~~~~~~~glrV 379 (532)
.|++..+.++.|.+
T Consensus 152 ~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 152 KLDGKKLNGRRISV 165 (216)
T ss_pred hccchhhcCceeee
Confidence 99998877776665
No 117
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.12 E-value=0.00087 Score=67.16 Aligned_cols=76 Identities=18% Similarity=0.218 Sum_probs=62.6
Q ss_pred ceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHH
Q 009552 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (532)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~L 367 (532)
.-.||.+.|-.+++.+-|...|++|=+....+++++. |++|+ |||.||.|.+.+++..|++++
T Consensus 190 DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdk----------RTgKS-------kgygfVSf~~pad~~rAmrem 252 (290)
T KOG0226|consen 190 DFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDK----------RTGKS-------KGYGFVSFRDPADYVRAMREM 252 (290)
T ss_pred cceeecccccccccHHHHHHHHHhccchhhccccccc----------ccccc-------ccceeeeecCHHHHHHHHHhh
Confidence 4568999999999999999999999877777776654 55554 789999999999999999999
Q ss_pred cCCCCCCCceEEE
Q 009552 368 NDEGNWRSGLRVR 380 (532)
Q Consensus 368 n~~~~~~~glrV~ 380 (532)
|+.....+.|+++
T Consensus 253 ~gkyVgsrpiklR 265 (290)
T KOG0226|consen 253 NGKYVGSRPIKLR 265 (290)
T ss_pred cccccccchhHhh
Confidence 9877666655544
No 118
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.10 E-value=0.0026 Score=55.55 Aligned_cols=66 Identities=20% Similarity=0.243 Sum_probs=50.9
Q ss_pred eeEEEecCCCcCcHHHHHHHhhhc--CCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 289 RIVVAENLPEDHCHQNLMKIFSAV--GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 289 rtVyV~nLP~d~t~edL~elFs~f--G~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
.||-|+|||...|.++|.+++.+. |...-+-+ |.|.++ ..|.|||||.|.+.+.|.+..+.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YL----------PiDf~~-------~~N~GYAFVNf~~~~~~~~F~~~ 64 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYL----------PIDFKN-------KCNLGYAFVNFTSPQAAIRFYKA 64 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEe----------eeeccC-------CCceEEEEEEcCCHHHHHHHHHH
Confidence 699999999999999999988763 44333333 323332 23689999999999999999999
Q ss_pred HcCCC
Q 009552 367 LNDEG 371 (532)
Q Consensus 367 Ln~~~ 371 (532)
+++..
T Consensus 65 f~g~~ 69 (97)
T PF04059_consen 65 FNGKK 69 (97)
T ss_pred HcCCc
Confidence 99764
No 119
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.09 E-value=0.0011 Score=74.10 Aligned_cols=75 Identities=21% Similarity=0.344 Sum_probs=59.4
Q ss_pred eeEEEecCCCcCcHHHHHHHhhhcCCe-eEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHH
Q 009552 289 RIVVAENLPEDHCHQNLMKIFSAVGSV-KTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (532)
Q Consensus 289 rtVyV~nLP~d~t~edL~elFs~fG~V-~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~L 367 (532)
+.|-+.|+|++++++||.+||..|-.+ .+|+|++-. +| ...|-|.|.|++.|+|..|+..|
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd---------------~G---~pTGe~mvAfes~~eAr~A~~dl 929 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRND---------------DG---VPTGECMVAFESQEEARRASMDL 929 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecC---------------CC---CcccceeEeecCHHHHHhhhhcc
Confidence 466789999999999999999999644 556665421 11 12567999999999999999999
Q ss_pred cCCCCCCCceEEEE
Q 009552 368 NDEGNWRSGLRVRL 381 (532)
Q Consensus 368 n~~~~~~~glrV~l 381 (532)
++..+..+.++|+|
T Consensus 930 ~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 930 DGQKIRNRVVSLRI 943 (944)
T ss_pred ccCcccceeEEEEe
Confidence 99888877777665
No 120
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.65 E-value=0.0037 Score=68.55 Aligned_cols=77 Identities=30% Similarity=0.380 Sum_probs=55.8
Q ss_pred ceeEEEecCCCc--CcHH----HHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHH
Q 009552 288 SRIVVAENLPED--HCHQ----NLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAE 361 (532)
Q Consensus 288 ~rtVyV~nLP~d--~t~e----dL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~Ae 361 (532)
...|+|.|+|.- ...+ -|.++|+++|+|.++-+ | .+... +.|||+|+||++..+|+
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~--P--------~~e~g--------gtkG~lf~E~~~~~~A~ 119 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYY--P--------IDEEG--------GTKGYLFVEYASMRDAK 119 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceee--c--------cCccC--------CeeeEEEEEecChhhHH
Confidence 347888999853 2233 35689999998877766 2 12121 23899999999999999
Q ss_pred HHHHHHcCCCCCCCc-eEEEEe
Q 009552 362 KAIAELNDEGNWRSG-LRVRLM 382 (532)
Q Consensus 362 kAv~~Ln~~~~~~~g-lrV~l~ 382 (532)
+||+.||+..++.+- ..|+++
T Consensus 120 ~aVK~l~G~~ldknHtf~v~~f 141 (698)
T KOG2314|consen 120 KAVKSLNGKRLDKNHTFFVRLF 141 (698)
T ss_pred HHHHhcccceecccceEEeehh
Confidence 999999999887763 444443
No 121
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=96.56 E-value=0.019 Score=55.41 Aligned_cols=75 Identities=23% Similarity=0.194 Sum_probs=62.8
Q ss_pred ceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHH
Q 009552 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (532)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~L 367 (532)
.-.|+|.+||...+++||++.+.+.|.|....+.+| |++.|||-..|+.+-||.+|
T Consensus 115 e~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------------------------g~GvV~~~r~eDMkYAvr~l 170 (241)
T KOG0105|consen 115 EYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------------------------GVGVVEYLRKEDMKYAVRKL 170 (241)
T ss_pred ceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------------------------cceeeeeeehhhHHHHHHhh
Confidence 347999999999999999999999999987777432 47999999999999999999
Q ss_pred cCCCCCCCceEEEEeeecC
Q 009552 368 NDEGNWRSGLRVRLMLRRG 386 (532)
Q Consensus 368 n~~~~~~~glrV~l~~k~~ 386 (532)
++..+.-.|+.+.+-.+..
T Consensus 171 d~~~~~seGe~~yirv~~~ 189 (241)
T KOG0105|consen 171 DDQKFRSEGETAYIRVRGD 189 (241)
T ss_pred ccccccCcCcEeeEEeccc
Confidence 9887777777766655433
No 122
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.55 E-value=0.0078 Score=62.74 Aligned_cols=75 Identities=16% Similarity=0.204 Sum_probs=57.1
Q ss_pred cceeEEEecCC--C--cCc-------HHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeC
Q 009552 287 QSRIVVAENLP--E--DHC-------HQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYE 355 (532)
Q Consensus 287 ~~rtVyV~nLP--~--d~t-------~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFe 355 (532)
..+||+++|+= + +.+ .++|++-.++||.|.+|.|+ ++. +.|-+-|.|.
T Consensus 264 ~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~-d~h--------------------PdGvvtV~f~ 322 (382)
T KOG1548|consen 264 ADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVY-DRH--------------------PDGVVTVSFR 322 (382)
T ss_pred CCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEe-ccC--------------------CCceeEEEeC
Confidence 46899999983 1 222 35677889999999999985 221 2678999999
Q ss_pred CHHHHHHHHHHHcCCCCCCCceEEEEe
Q 009552 356 SVELAEKAIAELNDEGNWRSGLRVRLM 382 (532)
Q Consensus 356 t~E~AekAv~~Ln~~~~~~~glrV~l~ 382 (532)
+.++|..||+.|++..+.++.|...+-
T Consensus 323 n~eeA~~ciq~m~GR~fdgRql~A~i~ 349 (382)
T KOG1548|consen 323 NNEEADQCIQTMDGRWFDGRQLTASIW 349 (382)
T ss_pred ChHHHHHHHHHhcCeeecceEEEEEEe
Confidence 999999999999988777765554443
No 123
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.37 E-value=0.0089 Score=62.10 Aligned_cols=83 Identities=20% Similarity=0.262 Sum_probs=59.3
Q ss_pred hccceeEEEecCCCcCcHHH----H--HHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHH
Q 009552 285 ELQSRIVVAENLPEDHCHQN----L--MKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVE 358 (532)
Q Consensus 285 ~~~~rtVyV~nLP~d~t~ed----L--~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E 358 (532)
.++..-|||-+|+..+-.|+ | .++|.+||.|+.|-|.+.. ++.... +...-+||+|.+.|
T Consensus 111 VvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt------~s~nst--------~~h~gvYITy~~ke 176 (480)
T COG5175 111 VVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKT------SSLNST--------ASHAGVYITYSTKE 176 (480)
T ss_pred eeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccc------cccccc--------cccceEEEEecchH
Confidence 35666899999987766554 2 4799999999999885321 111110 00112599999999
Q ss_pred HHHHHHHHHcCCCCCCCceEEEE
Q 009552 359 LAEKAIAELNDEGNWRSGLRVRL 381 (532)
Q Consensus 359 ~AekAv~~Ln~~~~~~~glrV~l 381 (532)
||..||.+.++..++++-|+...
T Consensus 177 dAarcIa~vDgs~~DGr~lkatY 199 (480)
T COG5175 177 DAARCIAEVDGSLLDGRVLKATY 199 (480)
T ss_pred HHHHHHHHhccccccCceEeeec
Confidence 99999999999988887666544
No 124
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=96.28 E-value=0.0027 Score=67.28 Aligned_cols=72 Identities=21% Similarity=0.220 Sum_probs=56.5
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
.++.|.++|||++++++||.+++..||+|..+.++.- |.-|||||++++.|..-|..
T Consensus 27 pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkG-----------------------knQAflem~d~~sAvtmv~~ 83 (492)
T KOG1190|consen 27 PSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKG-----------------------KNQAFLEMADEESAVTMVNY 83 (492)
T ss_pred CcceeEeccCCccccHHHHHHhcccccceeeeeeecc-----------------------chhhhhhhcchhhhhheeec
Confidence 5789999999999999999999999999999988531 34699999999999886665
Q ss_pred HcCCCCCCCceEEEE
Q 009552 367 LNDEGNWRSGLRVRL 381 (532)
Q Consensus 367 Ln~~~~~~~glrV~l 381 (532)
+......-++..|.+
T Consensus 84 y~~~~p~lr~~~~yi 98 (492)
T KOG1190|consen 84 YTSVTPVLRGQPIYI 98 (492)
T ss_pred ccccCccccCcceee
Confidence 554444444444443
No 125
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.24 E-value=0.0017 Score=65.13 Aligned_cols=62 Identities=19% Similarity=0.304 Sum_probs=45.2
Q ss_pred HHHHHHHhh-hcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEE
Q 009552 302 HQNLMKIFS-AVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVR 380 (532)
Q Consensus 302 ~edL~elFs-~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~Ln~~~~~~~glrV~ 380 (532)
.|+|...|+ +||+|+.+.||... +..+ .|.+||.|..+|+|++|++.||+.-+.++.|...
T Consensus 82 yEd~f~E~~~kygEiee~~Vc~Nl----------------~~hl--~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae 143 (260)
T KOG2202|consen 82 YEDVFTELEDKYGEIEELNVCDNL----------------GDHL--VGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAE 143 (260)
T ss_pred HHHHHHHHHHHhhhhhhhhhhccc----------------chhh--hhhhhhhcccHHHHHHHHHHHcCccccCCcceee
Confidence 345555555 89999999887421 0112 6789999999999999999999876666655544
Q ss_pred E
Q 009552 381 L 381 (532)
Q Consensus 381 l 381 (532)
+
T Consensus 144 ~ 144 (260)
T KOG2202|consen 144 L 144 (260)
T ss_pred e
Confidence 4
No 126
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.23 E-value=0.0068 Score=62.65 Aligned_cols=75 Identities=17% Similarity=0.251 Sum_probs=56.2
Q ss_pred ceeEE-EecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 288 SRIVV-AENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 288 ~rtVy-V~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
..++| |.+|+.+++.++|.+.|..+|.|..||+.... .++. .++||||+|.+.+++.+++..
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~----------~s~~-------~kg~a~~~~~~~~~~~~~~~~ 246 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDE----------ESGD-------SKGFAYVDFSAGNSKKLALND 246 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCC----------Cccc-------hhhhhhhhhhhchhHHHHhhc
Confidence 34566 99999999999999999999999999984322 2222 378999999999999988875
Q ss_pred HcCCCCCCCceEEE
Q 009552 367 LNDEGNWRSGLRVR 380 (532)
Q Consensus 367 Ln~~~~~~~glrV~ 380 (532)
....+.+..++|.
T Consensus 247 -~~~~~~~~~~~~~ 259 (285)
T KOG4210|consen 247 -QTRSIGGRPLRLE 259 (285)
T ss_pred -ccCcccCcccccc
Confidence 4444444444433
No 127
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.03 E-value=0.02 Score=62.48 Aligned_cols=69 Identities=22% Similarity=0.165 Sum_probs=50.1
Q ss_pred hccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCccccccc---EEEEEeCCHHHHH
Q 009552 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKL---HAFVEYESVELAE 361 (532)
Q Consensus 285 ~~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG---~AFVEFet~E~Ae 361 (532)
..-++.|||++||.+++++.|...|..||.|+.=.=.+.. .+ ..+-.|| |+|+.|+++..+.
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~--------------~~-~~~ppkGs~~YvflvFe~E~sV~ 320 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKAN--------------SR-GRAPPKGSYGYVFLVFEDERSVQ 320 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceEeecCCCcc--------------cc-ccCCCCCcccEEEEEecchHHHH
Confidence 4467899999999999999999999999987543321111 11 1122366 9999999988877
Q ss_pred HHHHHHc
Q 009552 362 KAIAELN 368 (532)
Q Consensus 362 kAv~~Ln 368 (532)
+-|.+.-
T Consensus 321 ~Ll~aC~ 327 (520)
T KOG0129|consen 321 SLLSACS 327 (520)
T ss_pred HHHHHHh
Confidence 7766554
No 128
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=95.90 E-value=0.0062 Score=66.97 Aligned_cols=80 Identities=21% Similarity=0.250 Sum_probs=67.7
Q ss_pred ceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHH
Q 009552 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (532)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~L 367 (532)
...|||++||...+++.++++.+.||.++..+++.+... .-+|||||.||.+......|++.|
T Consensus 289 ~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~-----------------g~skg~af~ey~dpsvtd~A~agL 351 (500)
T KOG0120|consen 289 PNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSAT-----------------GNSKGFAFCEYCDPSVTDQAIAGL 351 (500)
T ss_pred cchhhhccCcCccCHHHHHHHHHhcccchhheeeccccc-----------------ccccceeeeeeeCCcchhhhhccc
Confidence 357899999999999999999999999999999865321 124899999999999999999999
Q ss_pred cCCCCCCCceEEEEeee
Q 009552 368 NDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 368 n~~~~~~~glrV~l~~k 384 (532)
|+..+..+.|.|..+..
T Consensus 352 nGm~lgd~~lvvq~A~~ 368 (500)
T KOG0120|consen 352 NGMQLGDKKLVVQRAIV 368 (500)
T ss_pred chhhhcCceeEeehhhc
Confidence 99888877777766543
No 129
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=95.36 E-value=0.036 Score=61.09 Aligned_cols=60 Identities=17% Similarity=0.248 Sum_probs=45.0
Q ss_pred HHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHHcCCCCCCCc
Q 009552 303 QNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSG 376 (532)
Q Consensus 303 edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~Ln~~~~~~~g 376 (532)
|+|+.-+++||.|.+|.|-++-. .......-|.+||||++.|++++|.++|.+..+.++.
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~--------------~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRt 483 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYP--------------DENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRT 483 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCC--------------CCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcE
Confidence 45666788999999999965511 0011223578999999999999999999998877663
No 130
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.32 E-value=0.063 Score=47.18 Aligned_cols=82 Identities=18% Similarity=0.180 Sum_probs=47.8
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
..+.|.|=+||.. ....|.+.|++||+|....-+.....+. .....+....+..|.|++..+|++||.
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~----------~~~~~~~~~NWi~I~Y~~~~~A~rAL~- 72 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGI----------NPYPIPSGGNWIHITYDNPLSAQRALQ- 72 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG--------------------E-CCTTEEEEEESSHHHHHHHHT-
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeeccccccccc----------ccccCCCCCCEEEEECCCHHHHHHHHH-
Confidence 4567888899888 5667888999999997765211000000 000112336689999999999999997
Q ss_pred HcCCCCCCCceEEEE
Q 009552 367 LNDEGNWRSGLRVRL 381 (532)
Q Consensus 367 Ln~~~~~~~glrV~l 381 (532)
.|+..+.+ .+-|.+
T Consensus 73 ~NG~i~~g-~~mvGV 86 (100)
T PF05172_consen 73 KNGTIFSG-SLMVGV 86 (100)
T ss_dssp TTTEEETT-CEEEEE
T ss_pred hCCeEEcC-cEEEEE
Confidence 56655443 344443
No 131
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.00 E-value=0.016 Score=66.37 Aligned_cols=76 Identities=22% Similarity=0.287 Sum_probs=62.3
Q ss_pred ceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHH
Q 009552 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (532)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~L 367 (532)
...|+|+|+|...|.++|+.+|+++|+++++++.. .|.+|. ||-|||.|.+..+|.+++...
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt-----------~r~gkp-------kg~a~v~y~~ea~~s~~~~s~ 797 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVT-----------VRAGKP-------KGKARVDYNTEADASRKVASV 797 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhh-----------hhcccc-------ccceeccCCCcchhhhhcccc
Confidence 45799999999999999999999999999998642 355553 778999999999999999877
Q ss_pred cCCCCCCCceEEEE
Q 009552 368 NDEGNWRSGLRVRL 381 (532)
Q Consensus 368 n~~~~~~~glrV~l 381 (532)
+...+..+.+.|.+
T Consensus 798 d~~~~rE~~~~v~v 811 (881)
T KOG0128|consen 798 DVAGKRENNGEVQV 811 (881)
T ss_pred hhhhhhhcCccccc
Confidence 76655556666665
No 132
>PF09421 FRQ: Frequency clock protein; InterPro: IPR018554 The frequency clock protein, is the central component of the frq-based circadian negative feedback loop, regulates various aspects of the circadian clock in Neurospora crassa []. This protein has been shown to interact with itself via a coiled-coil [].
Probab=94.92 E-value=0.018 Score=67.21 Aligned_cols=53 Identities=25% Similarity=0.463 Sum_probs=48.2
Q ss_pred hccCCCCceecccccchhhHHHhhhcHHHHHHhhhc-CCceEEeeccceeeccC
Q 009552 224 ILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRK-SSKLVVSEDGKKIKRQN 276 (532)
Q Consensus 224 i~kd~dG~Vpi~~i~sFkKmK~Lt~d~~~I~eALr~-S~~LeVsedg~kVRR~~ 276 (532)
|.-|.+|||-|++||+.-.|--|..+.+.|..||.+ |++++|+.||.|||.+-
T Consensus 471 v~pDaeGWVYLNLL~NmAQLHiiNVTPdFVRsAV~E~StKfQLSpDGrKIRWRG 524 (989)
T PF09421_consen 471 VHPDAEGWVYLNLLCNMAQLHIINVTPDFVRSAVSEKSTKFQLSPDGRKIRWRG 524 (989)
T ss_pred cCcccccceehHHHHHHHHHHhhccCHHHHHHHHHhcccceeeCCCCCeeeecC
Confidence 345789999999999999999999999999999975 88999999999999875
No 133
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=94.91 E-value=0.099 Score=55.28 Aligned_cols=73 Identities=19% Similarity=0.262 Sum_probs=59.5
Q ss_pred cceeEEEecCCCc-CcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 287 QSRIVVAENLPED-HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 287 ~~rtVyV~nLP~d-~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
+.+.+.|.+|..+ ++-+.|-.||-.||.|..|+.++.+ .|.|.||+-+.++.++||.
T Consensus 286 ~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk----------------------~gtamVemgd~~aver~v~ 343 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK----------------------PGTAMVEMGDAYAVERAVT 343 (494)
T ss_pred CCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc----------------------cceeEEEcCcHHHHHHHHH
Confidence 3566788899865 4567899999999999999987421 4579999999999999999
Q ss_pred HHcCCCCCCCceEEEE
Q 009552 366 ELNDEGNWRSGLRVRL 381 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l 381 (532)
.||+..+++..|.|.+
T Consensus 344 hLnn~~lfG~kl~v~~ 359 (494)
T KOG1456|consen 344 HLNNIPLFGGKLNVCV 359 (494)
T ss_pred HhccCccccceEEEee
Confidence 9999888776565554
No 134
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=94.78 E-value=0.059 Score=50.34 Aligned_cols=61 Identities=21% Similarity=0.208 Sum_probs=44.9
Q ss_pred HHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEE
Q 009552 302 HQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRL 381 (532)
Q Consensus 302 ~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~Ln~~~~~~~glrV~l 381 (532)
..+|.+.|..||+|..||+.. +.-+|+|.+-+.|.+|+. |++..+.++.|+|++
T Consensus 50 ~~~ll~~~~~~GevvLvRfv~-------------------------~~mwVTF~dg~sALaals-~dg~~v~g~~l~i~L 103 (146)
T PF08952_consen 50 MDELLQKFAQYGEVVLVRFVG-------------------------DTMWVTFRDGQSALAALS-LDGIQVNGRTLKIRL 103 (146)
T ss_dssp HHHHHHHHHCCS-ECEEEEET-------------------------TCEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE
T ss_pred HHHHHHHHHhCCceEEEEEeC-------------------------CeEEEEECccHHHHHHHc-cCCcEECCEEEEEEe
Confidence 347888999999999999853 247899999999999997 899888888888887
Q ss_pred eeecCCC
Q 009552 382 MLRRGSK 388 (532)
Q Consensus 382 ~~k~~~k 388 (532)
....+-+
T Consensus 104 KtpdW~~ 110 (146)
T PF08952_consen 104 KTPDWLK 110 (146)
T ss_dssp -------
T ss_pred CCccHHH
Confidence 7766554
No 135
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.74 E-value=0.13 Score=48.03 Aligned_cols=62 Identities=18% Similarity=0.338 Sum_probs=48.2
Q ss_pred hccceeEEEecCCCcCc-HH---HHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHH
Q 009552 285 ELQSRIVVAENLPEDHC-HQ---NLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELA 360 (532)
Q Consensus 285 ~~~~rtVyV~nLP~d~t-~e---dL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~A 360 (532)
+..-.||+|+.|..++. .+ +|....+.||.|.+|.+|- +-.|.|.|++..+|
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG------------------------rqsavVvF~d~~SA 138 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG------------------------RQSAVVVFKDITSA 138 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC------------------------CceEEEEehhhHHH
Confidence 44557999998877653 23 4555678899999999862 33799999999999
Q ss_pred HHHHHHHcCC
Q 009552 361 EKAIAELNDE 370 (532)
Q Consensus 361 ekAv~~Ln~~ 370 (532)
-+||.++...
T Consensus 139 C~Av~Af~s~ 148 (166)
T PF15023_consen 139 CKAVSAFQSR 148 (166)
T ss_pred HHHHHhhcCC
Confidence 9999998753
No 136
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=94.39 E-value=0.04 Score=55.57 Aligned_cols=84 Identities=20% Similarity=0.212 Sum_probs=58.6
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
+.-.||+++||..+...-|++||+.||.|-+|-+-....+ +. -...|.++.....+ --+.|||.+.-.|..+.+.
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s-~~-~~r~~~~~n~~~~y---~EGWvEF~~KrvAK~iAe~ 147 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDS-KR-AARKRKGGNYKKLY---SEGWVEFISKRVAKRIAEL 147 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhH-HH-HHHhhcCCCccccc---hhHHHHHHHHHHHHHHHHH
Confidence 4458999999999999999999999999999987422110 00 00011111111111 1378999999999999999
Q ss_pred HcCCCCCCC
Q 009552 367 LNDEGNWRS 375 (532)
Q Consensus 367 Ln~~~~~~~ 375 (532)
||+..+.++
T Consensus 148 Lnn~~Iggk 156 (278)
T KOG3152|consen 148 LNNTPIGGK 156 (278)
T ss_pred hCCCccCCC
Confidence 999887665
No 137
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=94.39 E-value=0.087 Score=57.70 Aligned_cols=63 Identities=22% Similarity=0.197 Sum_probs=52.5
Q ss_pred cceeEEEecCCCcCcHHHHHHHhh-hcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFS-AVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs-~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
..|||||++||.-++-++|-.||+ .||-|..|-|-.|. + +--.||.+=|+|.+..+-.+||.
T Consensus 369 prrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~----------k-------~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 369 PRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDP----------K-------LKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred ccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCc----------c-------cCCCCCcceeeecccHHHHHHHh
Confidence 468999999999999999999999 69999999994431 1 11248899999999999999987
Q ss_pred H
Q 009552 366 E 366 (532)
Q Consensus 366 ~ 366 (532)
+
T Consensus 432 a 432 (520)
T KOG0129|consen 432 A 432 (520)
T ss_pred h
Confidence 3
No 138
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=94.35 E-value=0.2 Score=52.59 Aligned_cols=76 Identities=14% Similarity=0.040 Sum_probs=55.4
Q ss_pred ceeEEEecCCCcCcHHHHHHHhhhcCC--eeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 288 SRIVVAENLPEDHCHQNLMKIFSAVGS--VKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~elFs~fG~--V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
.-.+||+||=|.+|.+||.+.....|- |..++.... | .+..+||||+|...+....++.++
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFEN-----------R------~NGQSKG~AL~~~~SdAa~Kq~Me 142 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFEN-----------R------TNGQSKGYALLVLNSDAAVKQTME 142 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhc-----------c------cCCcccceEEEEecchHHHHHHHH
Confidence 347899999999999999888777663 333333221 1 122358999999999999999999
Q ss_pred HHcCCCCCCCceEEE
Q 009552 366 ELNDEGNWRSGLRVR 380 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~ 380 (532)
.|-...+.+..-.|.
T Consensus 143 iLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 143 ILPTKTIHGQSPTVL 157 (498)
T ss_pred hcccceecCCCCeee
Confidence 888777777654444
No 139
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=94.34 E-value=0.18 Score=40.50 Aligned_cols=53 Identities=19% Similarity=0.209 Sum_probs=41.3
Q ss_pred eeEEEecCCCcCcHHHHHHHhhhc----CCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHH
Q 009552 289 RIVVAENLPEDHCHQNLMKIFSAV----GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (532)
Q Consensus 289 rtVyV~nLP~d~t~edL~elFs~f----G~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv 364 (532)
-.|+|.|+ .+.+-++|+.+|..| + ...|.-+-| ..|-|.|.+.+.|.+||
T Consensus 6 eavhirGv-d~lsT~dI~~y~~~y~~~~~-~~~IEWIdD------------------------tScNvvf~d~~~A~~AL 59 (62)
T PF10309_consen 6 EAVHIRGV-DELSTDDIKAYFSEYFDEEG-PFRIEWIDD------------------------TSCNVVFKDEETAARAL 59 (62)
T ss_pred ceEEEEcC-CCCCHHHHHHHHHHhcccCC-CceEEEecC------------------------CcEEEEECCHHHHHHHH
Confidence 47999999 568889999999999 4 345544322 25889999999999999
Q ss_pred HHH
Q 009552 365 AEL 367 (532)
Q Consensus 365 ~~L 367 (532)
.+|
T Consensus 60 ~~L 62 (62)
T PF10309_consen 60 VAL 62 (62)
T ss_pred HcC
Confidence 764
No 140
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.14 E-value=0.11 Score=53.54 Aligned_cols=62 Identities=21% Similarity=0.181 Sum_probs=45.4
Q ss_pred HHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEE
Q 009552 302 HQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRV 379 (532)
Q Consensus 302 ~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~Ln~~~~~~~glrV 379 (532)
++++++-+++||.|.+|-|..... .|.+ . -.-.||||+..++|.||+-.||+..+.++..+.
T Consensus 300 ede~keEceKyg~V~~viifeip~----~p~d--------e----avRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A 361 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPS----QPED--------E----AVRIFVEFERVESAIKAVVDLNGRYFGGRVVSA 361 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCC----Cccc--------h----hheeeeeeccHHHHHHHHHhcCCceecceeeeh
Confidence 457888999999999998864311 1111 1 124899999999999999999998776654443
No 141
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=93.97 E-value=0.32 Score=53.26 Aligned_cols=7 Identities=14% Similarity=0.245 Sum_probs=2.5
Q ss_pred HHHHHhc
Q 009552 198 IQKVLNQ 204 (532)
Q Consensus 198 ~~kI~kQ 204 (532)
+..|..|
T Consensus 495 R~~Lmaq 501 (569)
T KOG3671|consen 495 RDALMAQ 501 (569)
T ss_pred HHHHHHH
Confidence 3333333
No 142
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=93.62 E-value=0.026 Score=58.88 Aligned_cols=81 Identities=22% Similarity=0.351 Sum_probs=56.4
Q ss_pred ccceeEEEecCCCcCcHHH-HH--HHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQN-LM--KIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~ed-L~--elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~Aek 362 (532)
++..-+||-+|+.+.-.++ |+ +.|.+||.|..|.+..+.. .....+ +--.+||+|++.|+|..
T Consensus 75 Vqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S----------~~s~~~----~~~s~yITy~~~eda~r 140 (327)
T KOG2068|consen 75 VQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPS----------SSSSSG----GTCSVYITYEEEEDADR 140 (327)
T ss_pred hhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcc----------cccCCC----CCCcccccccchHhhhh
Confidence 4556789999987765544 33 5899999999999865421 011111 12359999999999999
Q ss_pred HHHHHcCCCCCCCceEEE
Q 009552 363 AIAELNDEGNWRSGLRVR 380 (532)
Q Consensus 363 Av~~Ln~~~~~~~glrV~ 380 (532)
||...++..+.++.++..
T Consensus 141 ci~~v~g~~~dg~~lka~ 158 (327)
T KOG2068|consen 141 CIDDVDGFVDDGRALKAS 158 (327)
T ss_pred HHHHhhhHHhhhhhhHHh
Confidence 999888776666654433
No 143
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=93.41 E-value=0.19 Score=53.31 Aligned_cols=59 Identities=24% Similarity=0.302 Sum_probs=43.7
Q ss_pred eeEEEecCCCcCcHHHHHHHhh-----hcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHH
Q 009552 289 RIVVAENLPEDHCHQNLMKIFS-----AVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (532)
Q Consensus 289 rtVyV~nLP~d~t~edL~elFs-----~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekA 363 (532)
-.|-.++||+|++..++.+||. .-|++.-+-|.++. ++ ..|-|||-|..+|+|++|
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpd------------gr-------pTGdAFvlfa~ee~aq~a 222 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPD------------GR-------PTGDAFVLFACEEDAQFA 222 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCC------------CC-------cccceEEEecCHHHHHHH
Confidence 3566789999999999999997 33444444554431 11 256799999999999999
Q ss_pred HHH
Q 009552 364 IAE 366 (532)
Q Consensus 364 v~~ 366 (532)
|.+
T Consensus 223 L~k 225 (508)
T KOG1365|consen 223 LRK 225 (508)
T ss_pred HHH
Confidence 974
No 144
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=92.90 E-value=0.65 Score=50.12 Aligned_cols=28 Identities=32% Similarity=0.525 Sum_probs=24.9
Q ss_pred CCCCCCCCCCCCCcccccccCCCCCCCC
Q 009552 23 PSSSSDPSLSRNSSFSRLNAKAPEFVPT 50 (532)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~p~~~p~ 50 (532)
....|.+++.++.+.+++|+++|+|++.
T Consensus 18 ~~~~~~~S~g~s~~~~k~~~q~~~fv~r 45 (484)
T KOG1855|consen 18 VDVGMGPSIGDSDPLSKENDQAPEFVQR 45 (484)
T ss_pred eeccCCCcccccccccccccccchhhhc
Confidence 5567888999999999999999999983
No 145
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=92.71 E-value=7 Score=44.85 Aligned_cols=76 Identities=14% Similarity=0.019 Sum_probs=54.3
Q ss_pred eeEEEecCCCcCcHHHHHHHhhhcCCeeE-EEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHH
Q 009552 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKT-IRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (532)
Q Consensus 289 rtVyV~nLP~d~t~edL~elFs~fG~V~~-Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~L 367 (532)
-.|||+.||..+++.++.++|++.-.|+. |.|.+ .|.+.+ .+-|||+|..++++.+|+..-
T Consensus 435 ~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~-------~P~~~~-----------~~~afv~F~~~~a~~~a~~~~ 496 (944)
T KOG4307|consen 435 GALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTR-------LPTDLL-----------RPAAFVAFIHPTAPLTASSVK 496 (944)
T ss_pred ceEEeccCCccccccchhhhhhhhhhhhheeEecc-------CCcccc-----------cchhhheeccccccchhhhcc
Confidence 47999999999999999999999777766 65533 122211 457999999988888887644
Q ss_pred cCCCCCCCceEEEEe
Q 009552 368 NDEGNWRSGLRVRLM 382 (532)
Q Consensus 368 n~~~~~~~glrV~l~ 382 (532)
.......+-|+|+-.
T Consensus 497 ~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 497 TKFYPGHRIIRVDSI 511 (944)
T ss_pred cccccCceEEEeech
Confidence 444444455666543
No 146
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=92.67 E-value=0.072 Score=61.22 Aligned_cols=74 Identities=24% Similarity=0.185 Sum_probs=60.9
Q ss_pred eEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHHcC
Q 009552 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (532)
Q Consensus 290 tVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~Ln~ 369 (532)
+.++.|.....+...|-.+|+.||+|+++|++++- ..|.|+|.+.|.|..|+++|.+
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~-----------------------N~alvs~~s~~sai~a~dAl~g 356 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL-----------------------NMALVSFSSVESAILALDALQG 356 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccc-----------------------cchhhhhHHHHHHHHhhhhhcC
Confidence 34566777778888999999999999999997652 3699999999999999999999
Q ss_pred CCCCCCceEEEEeeecC
Q 009552 370 EGNWRSGLRVRLMLRRG 386 (532)
Q Consensus 370 ~~~~~~glrV~l~~k~~ 386 (532)
......|+-+++...+.
T Consensus 357 kevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 357 KEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred CcccccCCceeEEeccc
Confidence 88777777777766543
No 147
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=92.61 E-value=0.41 Score=40.85 Aligned_cols=64 Identities=19% Similarity=0.319 Sum_probs=45.3
Q ss_pred eEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHHcC
Q 009552 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (532)
Q Consensus 290 tVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~Ln~ 369 (532)
-||--.||.+....||.++|+.||.|.--.|- ...|||.....+.|..|++.++.
T Consensus 10 HVFhltFPkeWK~~DI~qlFspfG~I~VsWi~-------------------------dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLTFPKEWKTSDIYQLFSPFGQIYVSWIN-------------------------DTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE--TT--HHHHHHHCCCCCCEEEEEEC-------------------------TTEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEeCchHhhhhhHHHHhccCCcEEEEEEc-------------------------CCcEEEEeecHHHHHHHHHHhcc
Confidence 45544599999999999999999998655551 23799999999999999998863
Q ss_pred CCCCCCceEEEEe
Q 009552 370 EGNWRSGLRVRLM 382 (532)
Q Consensus 370 ~~~~~~glrV~l~ 382 (532)
....+|.-.
T Consensus 65 ----~~~y~i~tY 73 (87)
T PF08675_consen 65 ----NSSYRIQTY 73 (87)
T ss_dssp -----SSSEEEEH
T ss_pred ----CCceEEEEH
Confidence 235666543
No 148
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=92.32 E-value=0.46 Score=54.43 Aligned_cols=15 Identities=13% Similarity=0.315 Sum_probs=8.3
Q ss_pred CCChHHHHHHHhccc
Q 009552 192 GLNDESIQKVLNQVE 206 (532)
Q Consensus 192 ~~~~e~~~kI~kQvE 206 (532)
++.+...++|++++.
T Consensus 388 vf~~~~De~Il~~lD 402 (830)
T KOG1923|consen 388 VFHELNDEKILEALD 402 (830)
T ss_pred hhhhhhHHHHHHhhh
Confidence 344555566666554
No 149
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=92.21 E-value=0.93 Score=40.53 Aligned_cols=64 Identities=16% Similarity=0.160 Sum_probs=47.4
Q ss_pred eEEEecCCCcCcHHHHHHHhhhcC-CeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHHc
Q 009552 290 IVVAENLPEDHCHQNLMKIFSAVG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (532)
Q Consensus 290 tVyV~nLP~d~t~edL~elFs~fG-~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~Ln 368 (532)
.+.+-..|.-++.++|..+.+.+- .|..+||+++... ++-.+++.|.+.++|....+.+|
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p-------------------nrymVLikF~~~~~Ad~Fy~~fN 75 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP-------------------NRYMVLIKFRDQESADEFYEEFN 75 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC-------------------ceEEEEEEECCHHHHHHHHHHhC
Confidence 444455556667778877666654 6788899876432 24479999999999999999999
Q ss_pred CCCC
Q 009552 369 DEGN 372 (532)
Q Consensus 369 ~~~~ 372 (532)
|..+
T Consensus 76 Gk~F 79 (110)
T PF07576_consen 76 GKPF 79 (110)
T ss_pred CCcc
Confidence 8765
No 150
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=92.05 E-value=0.041 Score=63.49 Aligned_cols=79 Identities=19% Similarity=0.194 Sum_probs=63.8
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
...+|||++||+..+++.+|+..|..+|.|..|+|-.+... .. --|+||.|.+...+-+|..
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~------------~e------sa~~f~~~~n~dmtp~ak~ 431 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIK------------TE------SAYAFVSLLNTDMTPSAKF 431 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCC------------cc------cchhhhhhhccccCcccch
Confidence 45789999999999999999999999999999999654211 00 2379999999999999999
Q ss_pred HHcCCCCCCCceEEEEe
Q 009552 366 ELNDEGNWRSGLRVRLM 382 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l~ 382 (532)
++.+..+....+++.+-
T Consensus 432 e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 432 EESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhcCCccccCccccccc
Confidence 99887766666655544
No 151
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=92.00 E-value=0.087 Score=58.51 Aligned_cols=64 Identities=25% Similarity=0.391 Sum_probs=53.6
Q ss_pred cceeEEEecCCCcCcHHHHHHHhh-hcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFS-AVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs-~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
-+..|||.||=.-+|+-.|++|+. .+|.|...+| |+ + |.+|||.|.+.++|-....
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--Dk--------------I-------KShCyV~yss~eEA~atr~ 499 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DK--------------I-------KSHCYVSYSSVEEAAATRE 499 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCchHHHHH--HH--------------h-------hcceeEecccHHHHHHHHH
Confidence 456899999999999999999998 5788888776 21 1 5589999999999999999
Q ss_pred HHcCCCCCC
Q 009552 366 ELNDEGNWR 374 (532)
Q Consensus 366 ~Ln~~~~~~ 374 (532)
+|++.. |-
T Consensus 500 AlhnV~-WP 507 (718)
T KOG2416|consen 500 ALHNVQ-WP 507 (718)
T ss_pred HHhccc-cC
Confidence 999864 53
No 152
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=91.66 E-value=1.6 Score=47.11 Aligned_cols=6 Identities=17% Similarity=0.174 Sum_probs=2.4
Q ss_pred CCCccc
Q 009552 33 RNSSFS 38 (532)
Q Consensus 33 ~~~~~~ 38 (532)
.+.+.|
T Consensus 317 ~~p~as 322 (518)
T KOG1830|consen 317 PDPTAS 322 (518)
T ss_pred CCCcCC
Confidence 333444
No 153
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=91.51 E-value=0.23 Score=52.89 Aligned_cols=77 Identities=17% Similarity=0.289 Sum_probs=55.4
Q ss_pred eeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHHc
Q 009552 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (532)
Q Consensus 289 rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~Ln 368 (532)
..|-|.||...+|.+.++.||.-.|+|..++| +|..-+..||...| .|||-|.+...+.-|-- |.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrl-yp~~~d~~~pv~sR-------------tcyVkf~d~~sv~vaQh-Lt 72 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRL-YPNVDDSKIPVISR-------------TCYVKFLDSQSVTVAQH-LT 72 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccc-cCCCCCccCcceee-------------eEEEeccCCcceeHHhh-hc
Confidence 37889999999999999999999999999998 45333334443322 69999998877776643 55
Q ss_pred CCCCCCCceEEE
Q 009552 369 DEGNWRSGLRVR 380 (532)
Q Consensus 369 ~~~~~~~glrV~ 380 (532)
+..+-+..|.|.
T Consensus 73 ntvfvdraliv~ 84 (479)
T KOG4676|consen 73 NTVFVDRALIVR 84 (479)
T ss_pred cceeeeeeEEEE
Confidence 555544444443
No 154
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=91.42 E-value=0.64 Score=49.39 Aligned_cols=75 Identities=24% Similarity=0.311 Sum_probs=56.0
Q ss_pred eeEEEe--cCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 289 RIVVAE--NLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 289 rtVyV~--nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
..|++. |--+-+|.+-|-.|...+|.|.+|-|.+. +-.-|.|||++.+.|++|-..
T Consensus 121 ~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk----------------------ngVQAmVEFdsv~~AqrAk~a 178 (494)
T KOG1456|consen 121 KVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK----------------------NGVQAMVEFDSVEVAQRAKAA 178 (494)
T ss_pred eEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec----------------------cceeeEEeechhHHHHHHHhh
Confidence 344443 43467889999999999999999998641 123599999999999999999
Q ss_pred HcCCCCCCCceEEEEeeec
Q 009552 367 LNDEGNWRSGLRVRLMLRR 385 (532)
Q Consensus 367 Ln~~~~~~~glrV~l~~k~ 385 (532)
||+..+.-.=..++|...+
T Consensus 179 lNGADIYsGCCTLKIeyAk 197 (494)
T KOG1456|consen 179 LNGADIYSGCCTLKIEYAK 197 (494)
T ss_pred cccccccccceeEEEEecC
Confidence 9998777654444444433
No 155
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=91.14 E-value=1.4 Score=50.63 Aligned_cols=65 Identities=9% Similarity=0.202 Sum_probs=41.4
Q ss_pred CcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHHcCCCCCCCce
Q 009552 298 EDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGL 377 (532)
Q Consensus 298 ~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~Ln~~~~~~~gl 377 (532)
..++..+|-.+...-+.|..-.| ++++ .+ ..|.|||... +.|.+.++.|++..+.++.+
T Consensus 497 ~~~~~~~~~~~i~~~~~~~~~~i----------------g~i~--i~--~~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~ 555 (629)
T PRK11634 497 DGVEVRHIVGAIANEGDISSRYI----------------GNIK--LF--ASHSTIELPK-GMPGEVLQHFTRTRILNKPM 555 (629)
T ss_pred cCCCHHHHHHHHHhhcCCChhhC----------------CcEE--Ee--CCceEEEcCh-hhHHHHHHHhccccccCCce
Confidence 45677777777766554433222 1110 11 3489999865 56889999998777777777
Q ss_pred EEEEee
Q 009552 378 RVRLML 383 (532)
Q Consensus 378 rV~l~~ 383 (532)
.|.++.
T Consensus 556 ~~~~~~ 561 (629)
T PRK11634 556 NMQLLG 561 (629)
T ss_pred EEEECC
Confidence 777664
No 156
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=90.94 E-value=0.25 Score=52.48 Aligned_cols=75 Identities=12% Similarity=0.181 Sum_probs=52.9
Q ss_pred ceeEEEecCCCcCcHHHHHHHhhhcCC-eeE--EEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHH
Q 009552 288 SRIVVAENLPEDHCHQNLMKIFSAVGS-VKT--IRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (532)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~elFs~fG~-V~~--Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv 364 (532)
.-+|-+++||++.+.|+|..||+.|-. |+. |.|.... .....|-|||+|.+.|+|..|.
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~------------------qGrPSGeAFIqm~nae~a~aaa 341 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG------------------QGRPSGEAFIQMRNAERARAAA 341 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC------------------CCCcChhhhhhhhhhHHHHHHH
Confidence 347889999999999999999999863 444 5554321 1123568999999999999998
Q ss_pred HHHcCCCCCCCceEEEEe
Q 009552 365 AELNDEGNWRSGLRVRLM 382 (532)
Q Consensus 365 ~~Ln~~~~~~~glrV~l~ 382 (532)
....+... +...|+++
T Consensus 342 qk~hk~~m--k~RYiEvf 357 (508)
T KOG1365|consen 342 QKCHKKLM--KSRYIEVF 357 (508)
T ss_pred HHHHHhhc--ccceEEEe
Confidence 76664432 33444444
No 157
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=90.01 E-value=0.028 Score=64.50 Aligned_cols=65 Identities=25% Similarity=0.356 Sum_probs=52.6
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
+..++||+||+..++.++|...|+.+|.|..|+|..- +.. ..| +|.|||+|...++|.+||..
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h--------------~n~-~~~--rG~~Y~~F~~~~~~~aaV~f 728 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIH--------------KNE-KRF--RGKAYVEFLKPEHAGAAVAF 728 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHH--------------hhc-ccc--ccceeeEeecCCchhhhhhh
Confidence 4568999999999999999999999999988887521 111 123 78999999999999999984
Q ss_pred Hc
Q 009552 367 LN 368 (532)
Q Consensus 367 Ln 368 (532)
.+
T Consensus 729 ~d 730 (881)
T KOG0128|consen 729 RD 730 (881)
T ss_pred hh
Confidence 44
No 158
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=89.91 E-value=0.4 Score=48.59 Aligned_cols=66 Identities=20% Similarity=0.232 Sum_probs=52.3
Q ss_pred eeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHHc
Q 009552 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (532)
Q Consensus 289 rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~Ln 368 (532)
..|||.||..-++.|.|+.-|+.||.|...-++-|. | ++. .+-.+|+|...-.|.+|+..++
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~----------r-~k~-------t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD----------R-GKP-------TREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc----------c-ccc-------cccchhhhhcchhHHHHHHHhc
Confidence 589999999999999999999999999777665442 1 111 2347999999999999999886
Q ss_pred CCCC
Q 009552 369 DEGN 372 (532)
Q Consensus 369 ~~~~ 372 (532)
...+
T Consensus 94 ~~g~ 97 (275)
T KOG0115|consen 94 EGGF 97 (275)
T ss_pred cCcc
Confidence 5433
No 159
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=89.86 E-value=0.39 Score=55.79 Aligned_cols=77 Identities=19% Similarity=0.173 Sum_probs=62.6
Q ss_pred hccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHH
Q 009552 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (532)
Q Consensus 285 ~~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv 364 (532)
....+.++|++|..++....|...|..||.|..|.+.+- --||||.|++...|+.|+
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg-----------------------q~yayi~yes~~~aq~a~ 508 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG-----------------------QPYAYIQYESPPAAQAAT 508 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC-----------------------CcceeeecccCccchhhH
Confidence 345678999999999999999999999999999877431 238999999999999999
Q ss_pred HHHcCCCCCCC--ceEEEEeee
Q 009552 365 AELNDEGNWRS--GLRVRLMLR 384 (532)
Q Consensus 365 ~~Ln~~~~~~~--glrV~l~~k 384 (532)
..|.+..+.+- .++|.++..
T Consensus 509 ~~~rgap~G~P~~r~rvdla~~ 530 (975)
T KOG0112|consen 509 HDMRGAPLGGPPRRLRVDLASP 530 (975)
T ss_pred HHHhcCcCCCCCcccccccccC
Confidence 99998766543 366666543
No 160
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.77 E-value=1.4 Score=49.23 Aligned_cols=92 Identities=18% Similarity=0.215 Sum_probs=63.8
Q ss_pred cceeEEEecCCCc-CcHHHHHHHhhhc----CCeeEEEEeCCCCCCCC--------CC-C----------C---------
Q 009552 287 QSRIVVAENLPED-HCHQNLMKIFSAV----GSVKTIRTCLPQTSGGG--------AS-S----------G--------- 333 (532)
Q Consensus 287 ~~rtVyV~nLP~d-~t~edL~elFs~f----G~V~~Vri~~p~~~~~~--------~p-~----------~--------- 333 (532)
..+.|-|.|+.|+ +.-++|.-+|+.| |.|.+|.|+. -.-|+. .| . +
T Consensus 173 ~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYp-SeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 173 ETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYP-SEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred ccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEech-hhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 4578999999987 4678999999987 6999999963 222221 11 0 0
Q ss_pred ------CCcccccCcccccccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEEe
Q 009552 334 ------SRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRLM 382 (532)
Q Consensus 334 ------~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~Ln~~~~~~~glrV~l~ 382 (532)
+|.+-.. . + ---||.|+|.+.+.|.+.++.+++..+...++++.|.
T Consensus 252 ~~~~~kLR~Yq~~-r-L-kYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLR 303 (650)
T KOG2318|consen 252 DVDREKLRQYQLN-R-L-KYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLR 303 (650)
T ss_pred hHHHHHHHHHHhh-h-h-eeEEEEEEecCchHHHHHHHhcCcceeccccceeeee
Confidence 0100000 0 0 0138999999999999999999999998888877763
No 161
>PF07145 PAM2: Ataxin-2 C-terminal region; InterPro: IPR009818 This entry represents a conserved region approximately 250 residues long located towards the C terminus of eukaryotic ataxin-2. Ataxin-2 is a protein of unknown function, within which expansion of a polyglutamine tract (due to expansion of unstable CAG repeats in the coding region of the SCA2 gene) causes spinocerebellar ataxia type 2 (SCA2), a late-onset neurodegenerative disorder []. The expanded polyglutamine repeat in ataxin-2 causes disruption of the normal morphology of the Golgi complex and increased incidence of cell death []. Ataxin-2 is predicted to consist of mostly non-globular domains [].; PDB: 3NTW_B 1JH4_B 3KTR_B 3KUJ_B 3KUT_D 3KUS_D 1JGN_B 2RQG_A 2RQH_A.
Probab=87.19 E-value=0.39 Score=29.37 Aligned_cols=16 Identities=56% Similarity=0.916 Sum_probs=12.3
Q ss_pred cccccccCCCCCCCCC
Q 009552 36 SFSRLNAKAPEFVPTR 51 (532)
Q Consensus 36 ~~~~~~~~~p~~~p~~ 51 (532)
..|+||..|+||||+.
T Consensus 2 ~~s~LNp~A~eFvP~~ 17 (18)
T PF07145_consen 2 KSSKLNPNAPEFVPSS 17 (18)
T ss_dssp -SSSSSTTSSSS-TTT
T ss_pred cccccCCCCccccCCC
Confidence 3689999999999874
No 162
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=87.06 E-value=1.7 Score=49.96 Aligned_cols=8 Identities=25% Similarity=0.634 Sum_probs=4.3
Q ss_pred EEecCCCc
Q 009552 292 VAENLPED 299 (532)
Q Consensus 292 yV~nLP~d 299 (532)
|++||++.
T Consensus 532 ~m~nF~ds 539 (830)
T KOG1923|consen 532 FMGNFPDS 539 (830)
T ss_pred HHHhchhh
Confidence 45555554
No 163
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=87.05 E-value=0.32 Score=53.11 Aligned_cols=10 Identities=50% Similarity=0.690 Sum_probs=6.6
Q ss_pred HHHHHhhhcC
Q 009552 304 NLMKIFSAVG 313 (532)
Q Consensus 304 dL~elFs~fG 313 (532)
+|..+|+.-|
T Consensus 741 eldnvfsagg 750 (990)
T KOG1819|consen 741 ELDNVFSAGG 750 (990)
T ss_pred chhhhhccCC
Confidence 5777787644
No 164
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=85.71 E-value=0.24 Score=55.58 Aligned_cols=7 Identities=43% Similarity=0.857 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 009552 196 ESIQKVL 202 (532)
Q Consensus 196 e~~~kI~ 202 (532)
+.+++|+
T Consensus 240 e~Idrli 246 (556)
T PF05918_consen 240 ESIDRLI 246 (556)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 165
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=84.87 E-value=0.46 Score=51.74 Aligned_cols=75 Identities=17% Similarity=0.151 Sum_probs=57.1
Q ss_pred ccceeEEEecCCCcC-cHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDH-CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~-t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv 364 (532)
.+.++|-++-.+... |+++|...|.+||+|..|.|.+. -..|.|+|.+..+|-+|.
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-----------------------~~~a~vTF~t~aeag~a~ 426 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-----------------------SLHAVVTFKTRAEAGEAY 426 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc-----------------------hhhheeeeeccccccchh
Confidence 455667676666654 68999999999999999998542 126999999999997777
Q ss_pred HHHcCCCCCCCceEEEEeee
Q 009552 365 AELNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 365 ~~Ln~~~~~~~glrV~l~~k 384 (532)
. ..+-.+..+-|+|.+...
T Consensus 427 ~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 427 A-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred c-cccceecCceeEEEEecC
Confidence 5 555666677788777654
No 166
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=84.33 E-value=3.5 Score=45.00 Aligned_cols=68 Identities=13% Similarity=0.226 Sum_probs=56.8
Q ss_pred ceeEEEecCCCcCcHHHHHHHhhhc-CCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 288 SRIVVAENLPEDHCHQNLMKIFSAV-GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~elFs~f-G~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
+++|.|-.+|..+|.-||..|...| -.|..|+|++|... |+-.++|.|.+.++|..+.++
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p-------------------nrymvLIkFr~q~da~~Fy~e 134 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP-------------------NRYMVLIKFRDQADADTFYEE 134 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC-------------------ceEEEEEEeccchhHHHHHHH
Confidence 7889999999999999999988775 46899999886432 234799999999999999999
Q ss_pred HcCCCCCC
Q 009552 367 LNDEGNWR 374 (532)
Q Consensus 367 Ln~~~~~~ 374 (532)
+|+..+..
T Consensus 135 fNGk~Fn~ 142 (493)
T KOG0804|consen 135 FNGKQFNS 142 (493)
T ss_pred cCCCcCCC
Confidence 99886543
No 167
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=83.51 E-value=2.1 Score=41.48 Aligned_cols=82 Identities=21% Similarity=0.351 Sum_probs=52.4
Q ss_pred hccCCCCceecccccchhhHHHhhhcHHHHHHhhhcCCc--eEEeeccceeeccCC--Cc-chhhh-hccceeEEEecCC
Q 009552 224 ILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSK--LVVSEDGKKIKRQNP--LT-ESDLE-ELQSRIVVAENLP 297 (532)
Q Consensus 224 i~kd~dG~Vpi~~i~sFkKmK~Lt~d~~~I~eALr~S~~--LeVsedg~kVRR~~p--l~-e~d~~-~~~~rtVyV~nLP 297 (532)
+.+|++|||+|+.|+...+.+....+.+.|.+.+.++.+ .+++ +.+||-.+- +. +.+.+ .....+||
T Consensus 26 L~ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~K~Rf~l~--~~~IRA~qGHSi~v~~~~~~~~~P~~ly----- 98 (179)
T PRK00819 26 LTLDEEGWVDIDALIEALAKAYKWVTRELLEAVVESDDKGRFEIS--GDRIRARQGHSVDVDLDLEEDTPPAVLY----- 98 (179)
T ss_pred CccCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCCCcceEec--CceEEeccCcCCccccCCccCCCCceeE-----
Confidence 457999999999999876644333467888888887765 4454 567777642 21 11111 11223455
Q ss_pred CcCcHHHHHHHhhhcC
Q 009552 298 EDHCHQNLMKIFSAVG 313 (532)
Q Consensus 298 ~d~t~edL~elFs~fG 313 (532)
..+..+.+..|++. |
T Consensus 99 HGT~~~~~~~I~~~-G 113 (179)
T PRK00819 99 HGTSSEELDSILEE-G 113 (179)
T ss_pred eCCCHHHHHHHHHh-C
Confidence 56788889888865 5
No 168
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=83.11 E-value=1.2 Score=42.80 Aligned_cols=70 Identities=13% Similarity=0.118 Sum_probs=43.8
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhh-cCCe---eEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSA-VGSV---KTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~-fG~V---~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~Aek 362 (532)
...-|+|++||.+.|++++.+.++. ++.. ..+.-..+... .+. .. -.-|||.|.+.+++..
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~----------~~~--~~---~SRaYi~F~~~~~~~~ 70 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKS----------FKP--PT---YSRAYINFKNPEDLLE 70 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SS----------STT--S-----EEEEEEESSCHHHHH
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCcc----------CCC--Cc---ceEEEEEeCCHHHHHH
Confidence 3457999999999999999987776 6655 34442232211 110 00 1259999999999999
Q ss_pred HHHHHcCCC
Q 009552 363 AIAELNDEG 371 (532)
Q Consensus 363 Av~~Ln~~~ 371 (532)
..+.+++..
T Consensus 71 F~~~~~g~~ 79 (176)
T PF03467_consen 71 FRDRFDGHV 79 (176)
T ss_dssp HHHHCTTEE
T ss_pred HHHhcCCcE
Confidence 999888743
No 169
>PF12901 SUZ-C: SUZ-C motif; InterPro: IPR024642 The SUZ-C domain is a conserved motif found in one or more copies in several RNA-binding proteins []. It is always found at the C terminus of the protein and appears to be required for localization of the protein to specific subcellular structures. The domain was first characterised in the C.elegans protein SZY-20 which localizes to the centrosome. This domain is widely distributed in eukaryotes.
Probab=82.67 E-value=0.76 Score=32.65 Aligned_cols=15 Identities=60% Similarity=0.970 Sum_probs=12.4
Q ss_pred CCCCCCCCCCcccCC
Q 009552 509 GPRMPDGTRGFAMGR 523 (532)
Q Consensus 509 gprmpdgtrgf~~gr 523 (532)
+|+-||||+||.+.|
T Consensus 20 ~P~gPd~~~gf~~~R 34 (34)
T PF12901_consen 20 QPRGPDGTWGFQQRR 34 (34)
T ss_pred cCCCCCCCccccccC
Confidence 467788999999865
No 170
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=82.22 E-value=4 Score=43.22 Aligned_cols=7 Identities=29% Similarity=0.524 Sum_probs=3.3
Q ss_pred HHHHHhh
Q 009552 304 NLMKIFS 310 (532)
Q Consensus 304 dL~elFs 310 (532)
+|+++|+
T Consensus 244 ei~~~~~ 250 (465)
T KOG3973|consen 244 EIQSILS 250 (465)
T ss_pred HHHHHHH
Confidence 4444443
No 171
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=80.96 E-value=2.2 Score=41.48 Aligned_cols=60 Identities=23% Similarity=0.168 Sum_probs=40.7
Q ss_pred CcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHHc--CCCCCCCce
Q 009552 300 HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN--DEGNWRSGL 377 (532)
Q Consensus 300 ~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~Ln--~~~~~~~gl 377 (532)
...+.|+++|..|+.+..+..+.- | +-..|.|.+.++|.+|...|+ +..+.+..+
T Consensus 7 ~~~~~l~~l~~~~~~~~~~~~L~s--------------------F---rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l 63 (184)
T PF04847_consen 7 DNLAELEELFSTYDPPVQFSPLKS--------------------F---RRIRVVFESPESAQRARQLLHWDGTSFNGKRL 63 (184)
T ss_dssp --HHHHHHHHHTT-SS-EEEEETT--------------------T---TEEEEE-SSTTHHHHHHHTST--TSEETTEE-
T ss_pred hhHHHHHHHHHhcCCceEEEEcCC--------------------C---CEEEEEeCCHHHHHHHHHHhcccccccCCCce
Confidence 346889999999999888877531 1 138999999999999999888 555556566
Q ss_pred EEEEe
Q 009552 378 RVRLM 382 (532)
Q Consensus 378 rV~l~ 382 (532)
+|.+.
T Consensus 64 ~~yf~ 68 (184)
T PF04847_consen 64 RVYFG 68 (184)
T ss_dssp EEE--
T ss_pred EEEEc
Confidence 76665
No 172
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=78.60 E-value=1.6 Score=52.13 Aligned_cols=17 Identities=12% Similarity=0.161 Sum_probs=9.1
Q ss_pred ccCCCCCChHHHHHHHh
Q 009552 187 DHQHGGLNDESIQKVLN 203 (532)
Q Consensus 187 ~~~~~~~~~e~~~kI~k 203 (532)
...++++.++-+.+|++
T Consensus 78 ~t~ka~~PpeHLrki~~ 94 (2365)
T COG5178 78 LTLKAPIPPEHLRKIQS 94 (2365)
T ss_pred eccCCCCCHHHHHhhhC
Confidence 34455555555555554
No 173
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=78.38 E-value=0.49 Score=50.50 Aligned_cols=62 Identities=18% Similarity=0.150 Sum_probs=48.9
Q ss_pred hhccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHH
Q 009552 284 EELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (532)
Q Consensus 284 ~~~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekA 363 (532)
+++. |||+|.+|..++...++.++|..+|+|...++.. +. .+.+|-|+|........|
T Consensus 148 eeir-Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as---------------k~------~s~~c~~sf~~qts~~ha 205 (479)
T KOG4676|consen 148 EEIR-RTREVQSLISAAILPESGESFERKGEVSYAHTAS---------------KS------RSSSCSHSFRKQTSSKHA 205 (479)
T ss_pred HHHH-hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc---------------cC------CCcchhhhHhhhhhHHHH
Confidence 4444 8999999999999999999999999998887731 11 144677999988888888
Q ss_pred HHHH
Q 009552 364 IAEL 367 (532)
Q Consensus 364 v~~L 367 (532)
+...
T Consensus 206 lr~~ 209 (479)
T KOG4676|consen 206 LRSH 209 (479)
T ss_pred HHhc
Confidence 7643
No 174
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=77.39 E-value=2.1 Score=46.23 Aligned_cols=58 Identities=24% Similarity=0.358 Sum_probs=44.4
Q ss_pred eEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHHcC
Q 009552 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (532)
Q Consensus 290 tVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~Ln~ 369 (532)
.+|++||.+.++..+|+.+|... .+ +. .|..+--.|||||.+.+...|.+|++.|++
T Consensus 3 klyignL~p~~~psdl~svfg~a------k~--~~---------------~g~fl~k~gyafvd~pdq~wa~kaie~~sg 59 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDA------KI--PG---------------SGQFLVKSGYAFVDCPDQQWANKAIETLSG 59 (584)
T ss_pred cccccccCCCCChHHHHHHhccc------cC--CC---------------CcceeeecceeeccCCchhhhhhhHHhhch
Confidence 47999999999999999999754 11 00 001112257999999999999999999887
Q ss_pred C
Q 009552 370 E 370 (532)
Q Consensus 370 ~ 370 (532)
.
T Consensus 60 k 60 (584)
T KOG2193|consen 60 K 60 (584)
T ss_pred h
Confidence 5
No 175
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=76.75 E-value=2 Score=41.77 Aligned_cols=52 Identities=17% Similarity=0.426 Sum_probs=33.2
Q ss_pred ccCCCCceecccccchhhHHHhhhcHHHHHHhhhcCCc--eEEe---eccceeeccC
Q 009552 225 LKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSK--LVVS---EDGKKIKRQN 276 (532)
Q Consensus 225 ~kd~dG~Vpi~~i~sFkKmK~Lt~d~~~I~eALr~S~~--LeVs---edg~kVRR~~ 276 (532)
.+|+||||+|+-|+...+++.+.-+.+.|.+++.++.+ .++. .++.+||-..
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~K~Rfel~~~~~~~~~IRA~q 82 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDDKQRFELRYEDPGGWRIRANQ 82 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-SS--EEEE-----TTEEEESS
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCCCCCeeEEcccccCceEEECC
Confidence 47899999999999999988776678888888887654 5565 5567887664
No 176
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=76.05 E-value=7.7 Score=40.47 Aligned_cols=63 Identities=22% Similarity=0.197 Sum_probs=44.9
Q ss_pred ceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHH
Q 009552 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (532)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~L 367 (532)
..-|-|-+|+.... .-|..+|++||+|..+-.- + +-.+-+|.|.++-+|.|||. .
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~-------------~----------ngNwMhirYssr~~A~KALs-k 251 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP-------------S----------NGNWMHIRYSSRTHAQKALS-K 251 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecC-------------C----------CCceEEEEecchhHHHHhhh-h
Confidence 44566668876543 3477789999999877541 1 13478999999999999997 5
Q ss_pred cCCCCCCC
Q 009552 368 NDEGNWRS 375 (532)
Q Consensus 368 n~~~~~~~ 375 (532)
|+..+.+.
T Consensus 252 ng~ii~g~ 259 (350)
T KOG4285|consen 252 NGTIIDGD 259 (350)
T ss_pred cCeeeccc
Confidence 66555443
No 177
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=75.09 E-value=1.9 Score=51.70 Aligned_cols=13 Identities=23% Similarity=0.307 Sum_probs=5.8
Q ss_pred HHHHHhhhcCCce
Q 009552 251 SHLASVLRKSSKL 263 (532)
Q Consensus 251 ~~I~eALr~S~~L 263 (532)
+-+.+-+.+|..|
T Consensus 224 e~v~dw~y~sr~l 236 (2365)
T COG5178 224 EHVRDWVYTSRDL 236 (2365)
T ss_pred HHHHHHHhhcccc
Confidence 3444444444444
No 178
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=74.78 E-value=1.7 Score=45.13 Aligned_cols=78 Identities=15% Similarity=-0.025 Sum_probs=57.6
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
..+++|++++-+.+.+.++..+|.++|.+...++..-. ..+.+|++++|.|+..+.+..|+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~-----------------~~~~sk~~~s~~f~~ks~~~~~l~~ 149 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLE-----------------DSLSSKGGLSVHFAGKSQFFAALEE 149 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhc-----------------cccccccceeeccccHHHHHHHHHh
Confidence 36789999999999888999999999977666653311 1234588999999999999999986
Q ss_pred HcCCCCCCCceEEEE
Q 009552 367 LNDEGNWRSGLRVRL 381 (532)
Q Consensus 367 Ln~~~~~~~glrV~l 381 (532)
.-...+..+.+...+
T Consensus 150 s~~~~~~~~~~~~dl 164 (285)
T KOG4210|consen 150 SGSKVLDGNKGEKDL 164 (285)
T ss_pred hhccccccccccCcc
Confidence 554445444444333
No 179
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=73.82 E-value=13 Score=41.57 Aligned_cols=11 Identities=36% Similarity=0.619 Sum_probs=6.1
Q ss_pred CCCcccccccc
Q 009552 107 TGAFHVIPVHH 117 (532)
Q Consensus 107 ~~~~~~~~~~~ 117 (532)
+++..|+|++|
T Consensus 258 p~~~~ViPI~h 268 (582)
T PF03276_consen 258 PPPQPVIPIQH 268 (582)
T ss_pred CCccccccHHH
Confidence 33446777743
No 180
>KOG2278 consensus RNA:NAD 2'-phosphotransferase TPT1 [Translation, ribosomal structure and biogenesis]
Probab=72.81 E-value=2.6 Score=40.57 Aligned_cols=39 Identities=10% Similarity=0.416 Sum_probs=34.5
Q ss_pred hccCCCCceecccccchhhHHHhhhcHHHHHHhhhcCCc
Q 009552 224 ILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSK 262 (532)
Q Consensus 224 i~kd~dG~Vpi~~i~sFkKmK~Lt~d~~~I~eALr~S~~ 262 (532)
+.+++||||++..|++.++.+......++|..+++...+
T Consensus 27 L~m~~dGfvpv~~lL~lnq~r~~~~t~ddi~riVk~ndK 65 (207)
T KOG2278|consen 27 LNMRGDGFVPVEDLLNLNQFRGANHTIDDIRRIVKRNDK 65 (207)
T ss_pred ccccCCCceEHHHHhccchhcccCCcHHHHHHHHhcccc
Confidence 457899999999999999999998889999999987654
No 181
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=72.05 E-value=16 Score=29.87 Aligned_cols=59 Identities=20% Similarity=0.257 Sum_probs=34.5
Q ss_pred CcCcHHHHHHHhhhcC-----CeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHHcCCCC
Q 009552 298 EDHCHQNLMKIFSAVG-----SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGN 372 (532)
Q Consensus 298 ~d~t~edL~elFs~fG-----~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~Ln~~~~ 372 (532)
..++..+|..++...+ .|-.|+|. ..|+|||-.. +.|+++++.|++...
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~-------------------------~~~S~vev~~-~~a~~v~~~l~~~~~ 64 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIF-------------------------DNFSFVEVPE-EVAEKVLEALNGKKI 64 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE--------------------------SS-EEEEE-T-T-HHHHHHHHTT--S
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEe-------------------------eeEEEEEECH-HHHHHHHHHhcCCCC
Confidence 3566778888777654 35667763 2389999976 478999999998888
Q ss_pred CCCceEEEEe
Q 009552 373 WRSGLRVRLM 382 (532)
Q Consensus 373 ~~~glrV~l~ 382 (532)
.++.++|+++
T Consensus 65 ~gk~v~ve~A 74 (74)
T PF03880_consen 65 KGKKVRVERA 74 (74)
T ss_dssp SS----EEE-
T ss_pred CCeeEEEEEC
Confidence 8888877753
No 182
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=71.40 E-value=14 Score=39.22 Aligned_cols=11 Identities=64% Similarity=1.178 Sum_probs=4.6
Q ss_pred CCCCCCCCCCC
Q 009552 448 GRGKGRGRNDR 458 (532)
Q Consensus 448 GRGrgRGGrGR 458 (532)
|||+||||+||
T Consensus 368 GrGgGRGggG~ 378 (465)
T KOG3973|consen 368 GRGGGRGGGGR 378 (465)
T ss_pred CCCCCCCCCCC
Confidence 44444443333
No 183
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=71.15 E-value=1.5 Score=45.11 Aligned_cols=72 Identities=21% Similarity=0.381 Sum_probs=45.8
Q ss_pred eeEEEecCCCc------------CcHHHHHHHhhhcCCeeEEEE--eCCCCCCCCCCCCCCcccccCcccccccE-----
Q 009552 289 RIVVAENLPED------------HCHQNLMKIFSAVGSVKTIRT--CLPQTSGGGASSGSRSAKSEGMLFSNKLH----- 349 (532)
Q Consensus 289 rtVyV~nLP~d------------~t~edL~elFs~fG~V~~Vri--~~p~~~~~~~p~~~R~~k~~g~~~~~KG~----- 349 (532)
-|||+.+||-. .+++-|...|+.||+|..|.| |.|-. ..-+++..|..| +||
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr-------~~mn~kisgiq~--~gfg~g~d 220 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLR-------EEMNGKISGIQF--HGFGFGGD 220 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhH-------HHhcCcccccee--eccccCcc
Confidence 48898888731 356789999999999988865 32211 011455555444 333
Q ss_pred ----EEEEeCCHHHHHHHHHHHcC
Q 009552 350 ----AFVEYESVELAEKAIAELND 369 (532)
Q Consensus 350 ----AFVEFet~E~AekAv~~Ln~ 369 (532)
|||.|-.......|+..|.+
T Consensus 221 lffeayvqfmeykgfa~amdalr~ 244 (445)
T KOG2891|consen 221 LFFEAYVQFMEYKGFAQAMDALRG 244 (445)
T ss_pred hhHHHHHHHHHHHhHHHHHHHHhc
Confidence 55666666666667766654
No 184
>KOG3423 consensus Transcription initiation factor TFIID, subunit TAF10 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=70.39 E-value=7.3 Score=37.25 Aligned_cols=97 Identities=13% Similarity=0.258 Sum_probs=50.1
Q ss_pred CCCChHHHHHHHhccccccCCCcc-cccHHHHhhhccCCCCceecccccchhhHHHhhhc---HHHHHHhhhcCCceEEe
Q 009552 191 GGLNDESIQKVLNQVEYYFSDLNL-ATTDHLIRFILKDPEGYVPISTVASFKKIKAIISS---HSHLASVLRKSSKLVVS 266 (532)
Q Consensus 191 ~~~~~e~~~kI~kQvEyYFSD~NL-~~D~fL~~~i~kd~dG~Vpi~~i~sFkKmK~Lt~d---~~~I~eALr~S~~LeVs 266 (532)
....+..++.++.||+-|---+-= .+|-||.+ -||.-.+. ..+||..|... .+.+.+||+-++
T Consensus 66 ~~~~d~~l~efl~qLddYtP~IPDavt~~yL~~------aGf~~~D~--rv~RLvsLaAQKfvSDIa~DA~Q~~k----- 132 (176)
T KOG3423|consen 66 PTTKDTHLEEFLAQLDDYTPTIPDAVTDHYLKK------AGFQTSDP--RVKRLVSLAAQKFVSDIANDALQHSK----- 132 (176)
T ss_pred CCCcchHHHHHHHHHhcCCCCCcHHHHHHHHHh------cCCCcCcH--HHHHHHHHHHHHHHHHHHHHHHHHhh-----
Confidence 344566778899999988543221 22334433 46643332 12333333322 145677777663
Q ss_pred eccceeeccCCCcchhhhhccceeEEEecCCCcCcHHHHHHHhhhcC
Q 009552 267 EDGKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVG 313 (532)
Q Consensus 267 edg~kVRR~~pl~e~d~~~~~~rtVyV~nLP~d~t~edL~elFs~fG 313 (532)
+|-...+.... +..+.+. +..|+++|.....+||
T Consensus 133 -----~r~~~~~~~~k-~~~kdkK-------~tLtmeDL~~AL~EyG 166 (176)
T KOG3423|consen 133 -----IRTKTAIGKDK-KQAKDKK-------YTLTMEDLSPALAEYG 166 (176)
T ss_pred -----hcccccccccc-ccccccc-------eeeeHHHHHHHHHHhC
Confidence 22221111111 1111111 3468999999999999
No 185
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=67.25 E-value=41 Score=36.64 Aligned_cols=9 Identities=11% Similarity=0.327 Sum_probs=3.7
Q ss_pred cHHHHHHHh
Q 009552 301 CHQNLMKIF 309 (532)
Q Consensus 301 t~edL~elF 309 (532)
|.+|....|
T Consensus 471 tkDDaY~~F 479 (487)
T KOG4672|consen 471 TKDDAYNAF 479 (487)
T ss_pred cchHHHHHH
Confidence 444443333
No 186
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=67.18 E-value=13 Score=30.32 Aligned_cols=48 Identities=10% Similarity=0.129 Sum_probs=36.0
Q ss_pred CcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHHcCCC
Q 009552 298 EDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEG 371 (532)
Q Consensus 298 ~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~Ln~~~ 371 (532)
..++.++|+..+..|+- ..|+. ++ . =-||.|.+.++|+++....++..
T Consensus 10 ~~~~v~d~K~~Lr~y~~-~~I~~--d~----------------------t-GfYIvF~~~~Ea~rC~~~~~~~~ 57 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRW-DRIRD--DR----------------------T-GFYIVFNDSKEAERCFRAEDGTL 57 (66)
T ss_pred CCccHHHHHHHHhcCCc-ceEEe--cC----------------------C-EEEEEECChHHHHHHHHhcCCCE
Confidence 36789999999999963 33433 21 1 26999999999999999777554
No 187
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=66.75 E-value=3.8 Score=46.56 Aligned_cols=69 Identities=16% Similarity=0.054 Sum_probs=57.2
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
..-||||+|+-..+..+=++.+...||-|.+..+. + |+|.+|...+.+..|+..
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~-------------------------~-fgf~~f~~~~~~~ra~r~ 92 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD-------------------------K-FGFCEFLKHIGDLRASRL 92 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh-------------------------h-hcccchhhHHHHHHHHHH
Confidence 45699999999999999999999999988765431 2 799999999999999998
Q ss_pred HcCCCCCCCceEEEE
Q 009552 367 LNDEGNWRSGLRVRL 381 (532)
Q Consensus 367 Ln~~~~~~~glrV~l 381 (532)
|+...+.+.++.+.+
T Consensus 93 ~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 93 LTELNIDDQKLIENV 107 (668)
T ss_pred hcccCCCcchhhccc
Confidence 887777777776655
No 188
>PTZ00315 2'-phosphotransferase; Provisional
Probab=64.53 E-value=11 Score=42.75 Aligned_cols=84 Identities=21% Similarity=0.311 Sum_probs=54.6
Q ss_pred hccCCCCceecccccchhhHHHhhhcHHHHHHhhhcCCc--eEEe---ecc-ceeeccCC--Cc--chhhhhcc----ce
Q 009552 224 ILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSK--LVVS---EDG-KKIKRQNP--LT--ESDLEELQ----SR 289 (532)
Q Consensus 224 i~kd~dG~Vpi~~i~sFkKmK~Lt~d~~~I~eALr~S~~--LeVs---edg-~kVRR~~p--l~--e~d~~~~~----~r 289 (532)
+..|.+|||.|+.|+.-.+++....+.+.|.++++++.+ .+++ +++ .+||-..- +. +.....+. -.
T Consensus 398 L~ld~~Gwv~vd~LL~~~~~~~~~~t~e~i~~VV~~ndK~RF~l~~~~~~~~~~IRA~QGHSi~~V~~~l~~~~~~~~~~ 477 (582)
T PTZ00315 398 VPITSNGYVLLDDILRQPPMRNDPVSVQDVARVVRDSDKQRFKLAYGAADGRLYIRANQGHSIDGVEPELRTLTSVEEVP 477 (582)
T ss_pred CCcCCCCCEEHHHHHHHHHhcCCCCCHHHHHHHHHcCCCCceEEeccCCCCceEEEeccCcccccccccccccCCCCCCC
Confidence 457899999999999887776554578899999988764 6676 345 36776642 22 11111111 12
Q ss_pred eEEEecCCCcCcHHHHHHHhhhcC
Q 009552 290 IVVAENLPEDHCHQNLMKIFSAVG 313 (532)
Q Consensus 290 tVyV~nLP~d~t~edL~elFs~fG 313 (532)
+|| ..+..+.|..|++ -|
T Consensus 478 ~ly-----HGT~~~~~~sI~~-~G 495 (582)
T PTZ00315 478 VAV-----HGTYWSAWKAIQR-CG 495 (582)
T ss_pred eEE-----eCCcHHHHHHHHH-cC
Confidence 344 5678888888874 45
No 189
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=62.06 E-value=14 Score=46.90 Aligned_cols=10 Identities=20% Similarity=0.454 Sum_probs=4.4
Q ss_pred ecccccchhh
Q 009552 233 PISTVASFKK 242 (532)
Q Consensus 233 pi~~i~sFkK 242 (532)
-+-+++.|-+
T Consensus 1808 ~~GVmaGYgn 1817 (2039)
T PRK15319 1808 TVGVMASYIN 1817 (2039)
T ss_pred EEEEEEEecc
Confidence 3444444443
No 190
>PHA03420 E4 protein; Provisional
Probab=61.59 E-value=5.1 Score=36.28 Aligned_cols=7 Identities=29% Similarity=0.487 Sum_probs=2.8
Q ss_pred CCCcccc
Q 009552 158 NNNSHHQ 164 (532)
Q Consensus 158 ~~~~~~~ 164 (532)
-+|.+.-
T Consensus 77 lqrp~~p 83 (137)
T PHA03420 77 LQRPHHP 83 (137)
T ss_pred ccCCCCC
Confidence 3344433
No 191
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=54.76 E-value=45 Score=37.54 Aligned_cols=10 Identities=20% Similarity=0.245 Sum_probs=5.1
Q ss_pred ChHHHHHHHh
Q 009552 194 NDESIQKVLN 203 (532)
Q Consensus 194 ~~e~~~kI~k 203 (532)
+.+++-+|+.
T Consensus 302 tpd~RcRvvN 311 (582)
T PF03276_consen 302 TPDLRCRVVN 311 (582)
T ss_pred CccHHHHHHH
Confidence 4555555544
No 192
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=53.13 E-value=15 Score=40.08 Aligned_cols=15 Identities=33% Similarity=0.324 Sum_probs=9.3
Q ss_pred ccccccCCCcccccH
Q 009552 204 QVEYYFSDLNLATTD 218 (532)
Q Consensus 204 QvEyYFSD~NL~~D~ 218 (532)
-||||-.+.||.-|.
T Consensus 335 ~VEnq~~~~~~Vi~~ 349 (480)
T KOG2675|consen 335 RVENQENNKNLVIDD 349 (480)
T ss_pred EEeeecCCcceeeee
Confidence 467777777765443
No 193
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=51.94 E-value=28 Score=31.32 Aligned_cols=47 Identities=15% Similarity=0.346 Sum_probs=25.2
Q ss_pred eEEEecCCCc---------CcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCC
Q 009552 290 IVVAENLPED---------HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES 356 (532)
Q Consensus 290 tVyV~nLP~d---------~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet 356 (532)
+++|-|++.+ .+.++|++.|+.|..++ |+.++.. ....|+++|+|..
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~-------------------~gh~g~aiv~F~~ 65 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK-------------------QGHTGFAIVEFNK 65 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET-------------------TEEEEEEEEE--S
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC-------------------CCCcEEEEEEECC
Confidence 5677777543 35678999999998775 5555431 0236799999987
No 194
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=50.82 E-value=23 Score=39.70 Aligned_cols=78 Identities=15% Similarity=0.200 Sum_probs=48.0
Q ss_pred ceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCC--------------------CCCCCCCcccccCcccccc
Q 009552 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGG--------------------GASSGSRSAKSEGMLFSNK 347 (532)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~--------------------~~p~~~R~~k~~g~~~~~K 347 (532)
..|+-|+|++..-+..+|..|.+..-. ...+.-.+..++ .+|-|-+ +..|.
T Consensus 361 Rtt~~i~ni~n~~~~~dl~~Ildge~~--rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~-------nkcNv 431 (549)
T KOG4660|consen 361 RTTVMIKNIPNKYGQLDLLRILDGECP--RTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFK-------NKCNV 431 (549)
T ss_pred hhhhhhhccccchhHHHHHHHHhCcCc--hhhhHhhccCchhhHHhhhhhhccccCccceEEeccccc-------ccccc
Confidence 457788888888888888887765321 111100111111 0111111 12356
Q ss_pred cEEEEEeCCHHHHHHHHHHHcCCCCCCC
Q 009552 348 LHAFVEYESVELAEKAIAELNDEGNWRS 375 (532)
Q Consensus 348 G~AFVEFet~E~AekAv~~Ln~~~~~~~ 375 (532)
|||||.|.+.+++..+++++++. .|.+
T Consensus 432 GYAFINm~sp~ai~~F~kAFnGk-~W~~ 458 (549)
T KOG4660|consen 432 GYAFINMTSPEAIIRFYKAFNGK-KWEK 458 (549)
T ss_pred ceeEEeecCHHHHHHHHHHHcCC-chhh
Confidence 89999999999999999999985 4543
No 195
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=50.58 E-value=36 Score=35.55 Aligned_cols=71 Identities=14% Similarity=0.222 Sum_probs=52.5
Q ss_pred hccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHH
Q 009552 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (532)
Q Consensus 285 ~~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv 364 (532)
+...|+|..+|+..+++.-++..-|-+||.|++|-++....+.. +.. ..+ ..+.+..+-|-+.+.|....
T Consensus 12 ~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~----d~~--~~d----~~~~SilLSFlsr~~CLdFY 81 (309)
T PF10567_consen 12 EYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPS----DDY--NDD----KNNQSILLSFLSREICLDFY 81 (309)
T ss_pred cceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCccc----ccc--ccc----ccceEEEEeeechHHHHHHH
Confidence 34678999999999999999999999999999999986542111 111 111 12458999999999887665
Q ss_pred H
Q 009552 365 A 365 (532)
Q Consensus 365 ~ 365 (532)
.
T Consensus 82 N 82 (309)
T PF10567_consen 82 N 82 (309)
T ss_pred H
Confidence 4
No 196
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=47.60 E-value=52 Score=31.17 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=31.3
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEe
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTC 321 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~ 321 (532)
.....+++.+++..++..++..+|..+|.+..+.+.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (306)
T COG0724 223 EKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLP 258 (306)
T ss_pred cccceeeccccccccchhHHHHhccccccceeeecc
Confidence 356789999999999999999999999999666664
No 197
>KOG3428 consensus Small nuclear ribonucleoprotein SMD1 and related snRNPs [RNA processing and modification]
Probab=46.88 E-value=11 Score=33.66 Aligned_cols=9 Identities=67% Similarity=1.538 Sum_probs=3.6
Q ss_pred CCCCCCCCC
Q 009552 446 NKGRGKGRG 454 (532)
Q Consensus 446 grGRGrgRG 454 (532)
++|||+|||
T Consensus 97 grgrg~Grg 105 (109)
T KOG3428|consen 97 GRGRGRGRG 105 (109)
T ss_pred ccccccccC
Confidence 333444433
No 198
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=46.21 E-value=61 Score=38.94 Aligned_cols=11 Identities=36% Similarity=0.564 Sum_probs=5.9
Q ss_pred CCCCcccCCCC
Q 009552 515 GTRGFAMGRGK 525 (532)
Q Consensus 515 gtrgf~~grg~ 525 (532)
||-||--|++.
T Consensus 1266 ggGgfg~G~~G 1276 (1282)
T KOG0921|consen 1266 GGGGFGGGGRG 1276 (1282)
T ss_pred CCCCCCCCCcc
Confidence 45556555543
No 199
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=41.13 E-value=36 Score=37.99 Aligned_cols=12 Identities=33% Similarity=0.526 Sum_probs=8.0
Q ss_pred eeEEEecCCCcC
Q 009552 289 RIVVAENLPEDH 300 (532)
Q Consensus 289 rtVyV~nLP~d~ 300 (532)
|+++|++||+..
T Consensus 520 c~~vVE~Fpess 531 (817)
T KOG1925|consen 520 CSLVVETFPESS 531 (817)
T ss_pred HHHHHHhCCcch
Confidence 566677777654
No 200
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=40.88 E-value=5e+02 Score=28.11 Aligned_cols=6 Identities=17% Similarity=-0.213 Sum_probs=2.2
Q ss_pred CCCCCC
Q 009552 144 HNHHHH 149 (532)
Q Consensus 144 ~~~~~~ 149 (532)
++++-.
T Consensus 342 yn~~~~ 347 (498)
T KOG4849|consen 342 YNGLPP 347 (498)
T ss_pred CCCCCc
Confidence 333333
No 201
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=38.68 E-value=15 Score=37.25 Aligned_cols=110 Identities=17% Similarity=0.230 Sum_probs=56.9
Q ss_pred CChHHHHHHHhccccccCCCcccccHHHHhhhccCCCCceecccccchhhHHHhhhcHHHHHHhhhc-----CCceEEee
Q 009552 193 LNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRK-----SSKLVVSE 267 (532)
Q Consensus 193 ~~~e~~~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dG~Vpi~~i~sFkKmK~Lt~d~~~I~eALr~-----S~~LeVse 267 (532)
.++.+.++|++.++.. .+ ..+.+- --+.|.+.-.++...+++..+..|.+. .+.|++ +..-.+..
T Consensus 14 ~~~~~~~~Iv~~~~~~-~~------~~VlEi--GpG~G~lT~~L~~~~~~v~~vE~d~~~-~~~L~~~~~~~~~~~vi~~ 83 (262)
T PF00398_consen 14 VDPNIADKIVDALDLS-EG------DTVLEI--GPGPGALTRELLKRGKRVIAVEIDPDL-AKHLKERFASNPNVEVING 83 (262)
T ss_dssp EHHHHHHHHHHHHTCG-TT------SEEEEE--SSTTSCCHHHHHHHSSEEEEEESSHHH-HHHHHHHCTTCSSEEEEES
T ss_pred CCHHHHHHHHHhcCCC-CC------CEEEEe--CCCCccchhhHhcccCcceeecCcHhH-HHHHHHHhhhcccceeeec
Confidence 3567777787776543 11 111111 224555555554444455555555433 233332 22333445
Q ss_pred ccceeeccCCCcchhhhhccceeEEEecCCCcCcHHHHHHHhh--hcCCeeEEE
Q 009552 268 DGKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFS--AVGSVKTIR 319 (532)
Q Consensus 268 dg~kVRR~~pl~e~d~~~~~~rtVyV~nLP~d~t~edL~elFs--~fG~V~~Vr 319 (532)
|..++.....+ .....++|+|||+..+.+-|..++. .||.+..+-
T Consensus 84 D~l~~~~~~~~-------~~~~~~vv~NlPy~is~~il~~ll~~~~~g~~~~~l 130 (262)
T PF00398_consen 84 DFLKWDLYDLL-------KNQPLLVVGNLPYNISSPILRKLLELYRFGRVRMVL 130 (262)
T ss_dssp -TTTSCGGGHC-------SSSEEEEEEEETGTGHHHHHHHHHHHGGGCEEEEEE
T ss_pred chhccccHHhh-------cCCceEEEEEecccchHHHHHHHhhcccccccceEE
Confidence 54433222111 2356789999999999998888886 455444333
No 202
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=38.32 E-value=1.9e+02 Score=23.28 Aligned_cols=52 Identities=19% Similarity=0.247 Sum_probs=31.0
Q ss_pred cHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeC-CHHHHHHHHHHHcC
Q 009552 301 CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYE-SVELAEKAIAELND 369 (532)
Q Consensus 301 t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFe-t~E~AekAv~~Ln~ 369 (532)
+.-++.+.|+.+| |.-.+|-.- |...+ . +.-.-||+|+ ..+..++|++.|..
T Consensus 13 ~L~~vL~~f~~~~-iNlt~IeSR-------P~~~~--~-------~~y~Ffvd~~~~~~~~~~~l~~L~~ 65 (74)
T cd04904 13 ALARALKLFEEFG-VNLTHIESR-------PSRRN--G-------SEYEFFVDCEVDRGDLDQLISSLRR 65 (74)
T ss_pred HHHHHHHHHHHCC-CcEEEEECC-------CCCCC--C-------ceEEEEEEEEcChHHHHHHHHHHHH
Confidence 4668888999987 344444210 11111 0 1336788888 56667788888864
No 203
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=37.20 E-value=62 Score=36.27 Aligned_cols=14 Identities=29% Similarity=0.425 Sum_probs=5.7
Q ss_pred ccccCCCCCCCCCC
Q 009552 39 RLNAKAPEFVPTRN 52 (532)
Q Consensus 39 ~~~~~~p~~~p~~~ 52 (532)
.+-+..|+.-|-+.
T Consensus 193 ~~~~~~~~~~P~~~ 206 (817)
T KOG1925|consen 193 GGDADSPETAPAAR 206 (817)
T ss_pred cCCCCCcccChHhh
Confidence 33344444444333
No 204
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.64 E-value=70 Score=34.85 Aligned_cols=54 Identities=20% Similarity=0.381 Sum_probs=40.2
Q ss_pred eeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 289 rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
-.|-|.+||.....+||..+|+.|+. +..+|.- + ..-+||-.|++...|..||.
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq~-kgfdIkW---------------------v-DdthalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQN-KGFDIKW---------------------V-DDTHALAVFSSVNRAAEALT 445 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhhc-CCceeEE---------------------e-ecceeEEeecchHHHHHHhh
Confidence 35778999999999999999999975 1222210 0 02279999999999998875
No 205
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.71 E-value=84 Score=33.55 Aligned_cols=6 Identities=33% Similarity=0.595 Sum_probs=2.4
Q ss_pred hhHHHh
Q 009552 241 KKIKAI 246 (532)
Q Consensus 241 kKmK~L 246 (532)
++|+..
T Consensus 249 ~kL~~~ 254 (365)
T KOG2391|consen 249 QKLVAM 254 (365)
T ss_pred HHHHHH
Confidence 344443
No 206
>KOG2590 consensus RNA-binding protein LARP/SRO9 and related La domain proteins [Posttranslational modification, protein turnover, chaperones; Translation, ribosomal structure and biogenesis]
Probab=31.86 E-value=14 Score=40.72 Aligned_cols=61 Identities=16% Similarity=0.132 Sum_probs=51.4
Q ss_pred HHHHhccccccCCCcccccHHHHhhhccCCCC---ceecccccchhhHHHhhhcHHHHHHhhhcCC
Q 009552 199 QKVLNQVEYYFSDLNLATTDHLIRFILKDPEG---YVPISTVASFKKIKAIISSHSHLASVLRKSS 261 (532)
Q Consensus 199 ~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dG---~Vpi~~i~sFkKmK~Lt~d~~~I~eALr~S~ 261 (532)
.+-+++++|||+-.++.+|.|+...+ +..| |.+++.+.+|.+...++.+...++..++.+.
T Consensus 101 ~~~~k~~s~~~~~~~~~~~~~~~~k~--~~t~~~~~~~~S~~~~s~~~~~~s~n~~~~~~~~~~sa 164 (448)
T KOG2590|consen 101 SKSDKKKSWPASKPFTPRDSFKGSKP--TNTGNGTFLPISKISSSGPVSGGSANNSNIRGPLKGSA 164 (448)
T ss_pred ccccccccCcccCCCCccccccCCCc--cccCCCccCCCccccccccccCcccccccccCcCCCCC
Confidence 33455999999999999999988874 4555 9999999999999999999888888888743
No 207
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=31.72 E-value=1.8e+02 Score=23.29 Aligned_cols=45 Identities=13% Similarity=0.118 Sum_probs=33.0
Q ss_pred HHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHHc
Q 009552 302 HQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (532)
Q Consensus 302 ~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~Ln 368 (532)
.++|.+++.++| +...+|. +. +.-++.|+-|++.+.++++++.|.
T Consensus 36 i~~~~~~~~~~G-a~~~~~s---------------Gs------G~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 36 IDELKEAAEENG-ALGAKMS---------------GS------GGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHHTT-ESEEEEE---------------TT------SSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC-CCceecC---------------CC------CCCCeEEEEECCHHHHHHHHHHHH
Confidence 567888889999 5566662 11 114588999999999999988875
No 208
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=30.77 E-value=2.4e+02 Score=21.41 Aligned_cols=32 Identities=16% Similarity=0.307 Sum_probs=27.6
Q ss_pred eEEEecCCCcCcHHHHHHHhhhcCCeeEEEEe
Q 009552 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTC 321 (532)
Q Consensus 290 tVyV~nLP~d~t~edL~elFs~fG~V~~Vri~ 321 (532)
|+.|.|+-=..+...|++.+...--|.++.+-
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd 32 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVD 32 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEE
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEE
Confidence 67888888788889999999998889999884
No 209
>KOG2252 consensus CCAAT displacement protein and related homeoproteins [Transcription]
Probab=30.30 E-value=47 Score=37.43 Aligned_cols=70 Identities=21% Similarity=0.393 Sum_probs=41.9
Q ss_pred CCCCceeccc-ccchhhHHHhhhcHHHHH--HhhhcCCceEEeeccceeeccCC--CcchhhhhccceeEEEecCCCcCc
Q 009552 227 DPEGYVPIST-VASFKKIKAIISSHSHLA--SVLRKSSKLVVSEDGKKIKRQNP--LTESDLEELQSRIVVAENLPEDHC 301 (532)
Q Consensus 227 d~dG~Vpi~~-i~sFkKmK~Lt~d~~~I~--eALr~S~~LeVsedg~kVRR~~p--l~e~d~~~~~~rtVyV~nLP~d~t 301 (532)
++.-|-.++. =.+|.||.++..+.+... .+|+.- .++|+.- -.+......+.|.|| .+.-
T Consensus 367 nPKPW~klKsGRetFrRM~~WL~eP~~~r~m~~L~~~----------a~kRke~ep~~d~~~~~KKPRlVf-----Td~Q 431 (558)
T KOG2252|consen 367 NPKPWSKLKSGRETFRRMANWLEEPEFQRLMSALRKK----------ACKRKEQEPTDDKMLQTKKPRLVF-----TDIQ 431 (558)
T ss_pred CCCchhhhccccHHHHHHHHHhcCHHHHHHHHHHHHH----------HhhhcccCCCccccccCCCceeee-----cHHH
Confidence 3455655543 457999999988655443 223221 2566653 222233344568888 6777
Q ss_pred HHHHHHHhhh
Q 009552 302 HQNLMKIFSA 311 (532)
Q Consensus 302 ~edL~elFs~ 311 (532)
.+.|+.||+.
T Consensus 432 krTL~aiFke 441 (558)
T KOG2252|consen 432 KRTLQAIFKE 441 (558)
T ss_pred HHHHHHHHhc
Confidence 7889999975
No 210
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=29.55 E-value=37 Score=29.27 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=21.5
Q ss_pred hccceeEEEecCCCcCcHHHHHHHh
Q 009552 285 ELQSRIVVAENLPEDHCHQNLMKIF 309 (532)
Q Consensus 285 ~~~~rtVyV~nLP~d~t~edL~elF 309 (532)
.+..|||.|.|||....+|+|++..
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeE
Confidence 4568999999999999999998754
No 211
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=29.04 E-value=1.1e+03 Score=28.73 Aligned_cols=18 Identities=28% Similarity=0.257 Sum_probs=11.2
Q ss_pred EEEEEeCCHHHHHHHHHH
Q 009552 349 HAFVEYESVELAEKAIAE 366 (532)
Q Consensus 349 ~AFVEFet~E~AekAv~~ 366 (532)
.-||=.++...|+|--+.
T Consensus 570 L~F~Pl~gSKLAkKRee~ 587 (982)
T PF03154_consen 570 LYFVPLPGSKLAKKREER 587 (982)
T ss_pred eeeeecCccHHhhhhHHH
Confidence 467777776666655543
No 212
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=28.74 E-value=55 Score=32.00 Aligned_cols=72 Identities=13% Similarity=0.152 Sum_probs=48.4
Q ss_pred eEEEecCCCcCc-----HHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHH
Q 009552 290 IVVAENLPEDHC-----HQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (532)
Q Consensus 290 tVyV~nLP~d~t-----~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv 364 (532)
++++.+++.++- ....+.+|-.|-+....+++ ..++..-|.|.+.+.|..|.
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l-----------------------rsfrrvRi~f~~p~~a~~a~ 68 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL-----------------------RSFRRVRINFSNPEAAADAR 68 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH-----------------------HhhceeEEeccChhHHHHHH
Confidence 566777765542 23456677666554444432 23557889999999999999
Q ss_pred HHHcCCCCCCC-ceEEEEeee
Q 009552 365 AELNDEGNWRS-GLRVRLMLR 384 (532)
Q Consensus 365 ~~Ln~~~~~~~-glrV~l~~k 384 (532)
.++....+.++ -++..++..
T Consensus 69 i~~~~~~f~~~~~~k~yfaQ~ 89 (193)
T KOG4019|consen 69 IKLHSTSFNGKNELKLYFAQP 89 (193)
T ss_pred HHhhhcccCCCceEEEEEccC
Confidence 98888777666 566666543
No 213
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=27.76 E-value=92 Score=32.55 Aligned_cols=27 Identities=15% Similarity=0.069 Sum_probs=23.3
Q ss_pred eeEEEecCCCcCcHHHHHHHhhhcCCe
Q 009552 289 RIVVAENLPEDHCHQNLMKIFSAVGSV 315 (532)
Q Consensus 289 rtVyV~nLP~d~t~edL~elFs~fG~V 315 (532)
.-||+.||+.|+...||+..+.+-|.+
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~ 357 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECT 357 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCC
Confidence 459999999999999999988887653
No 214
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=27.64 E-value=1.9e+02 Score=24.64 Aligned_cols=52 Identities=13% Similarity=0.215 Sum_probs=35.1
Q ss_pred CCCcCcHHHHHHHhhh-cC-CeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHH
Q 009552 296 LPEDHCHQNLMKIFSA-VG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (532)
Q Consensus 296 LP~d~t~edL~elFs~-fG-~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~L 367 (532)
++.+++..+|++.++. || .|..|+++.-. .+ .-=|||.|..-++|......|
T Consensus 28 V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~-----------~~---------~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 28 VDRRATKPDIKRAVEELFDVKVEKVNTLITP-----------KG---------EKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred ECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-----------CC---------cEEEEEEeCCCCcHHHHHHhh
Confidence 3467888888887777 55 67788775321 00 113999999988888776544
No 215
>PF14893 PNMA: PNMA
Probab=27.37 E-value=52 Score=35.02 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=20.7
Q ss_pred ceeEEEecCCCcCcHHHHHHHhhh
Q 009552 288 SRIVVAENLPEDHCHQNLMKIFSA 311 (532)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~elFs~ 311 (532)
.|.|.|.+||+|+++++|++....
T Consensus 18 ~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 18 QRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred hhhheeecCCCCCCHHHHHHHHHH
Confidence 468999999999999999887654
No 216
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=27.08 E-value=2.2e+02 Score=30.93 Aligned_cols=18 Identities=22% Similarity=0.226 Sum_probs=9.9
Q ss_pred HHHhhhcCCceEEeeccc
Q 009552 253 LASVLRKSSKLVVSEDGK 270 (532)
Q Consensus 253 I~eALr~S~~LeVsedg~ 270 (532)
.+.||+....+...-||.
T Consensus 294 ~~~Alq~qPvVNavIdg~ 311 (457)
T KOG0559|consen 294 AAYALQDQPVVNAVIDGD 311 (457)
T ss_pred HHHHhhhCcceeeeecCC
Confidence 345677776654444443
No 217
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=26.54 E-value=59 Score=35.74 Aligned_cols=8 Identities=38% Similarity=0.621 Sum_probs=4.2
Q ss_pred CCeeEEEE
Q 009552 313 GSVKTIRT 320 (532)
Q Consensus 313 G~V~~Vri 320 (532)
|+|.+|.|
T Consensus 370 GKvNsItl 377 (480)
T KOG2675|consen 370 GKVNSITL 377 (480)
T ss_pred ceeeeEEe
Confidence 55555554
No 218
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.97 E-value=2.6e+02 Score=31.92 Aligned_cols=16 Identities=19% Similarity=0.299 Sum_probs=7.0
Q ss_pred HHHHHHhhh-cCCeeEE
Q 009552 303 QNLMKIFSA-VGSVKTI 318 (532)
Q Consensus 303 edL~elFs~-fG~V~~V 318 (532)
..|++++++ ||.=..|
T Consensus 523 ~~i~~~l~~~~g~~~~v 539 (585)
T PRK14950 523 KITEELLSNFVGKTCAV 539 (585)
T ss_pred HHHHHHHHHHhCCceEE
Confidence 345555544 3443333
No 219
>PF05750 Rubella_Capsid: Rubella capsid protein; InterPro: IPR008819 Rubella virus is an enveloped positive-strand RNA virus of the family Togaviridae. Virions are composed of three structural proteins: a capsid and two membrane-spanning glycoproteins, E2 and E1. During virus assembly, the capsid interacts with genomic RNA to form nucleocapsids. It has been discovered that capsid phosphorylation serves to negatively regulate binding of viral genomic RNA. This may delay the initiation of nucleocapsid assembly until sufficient amounts of virus glycoproteins accumulate at the budding site and/or prevent non-specific binding to cellular RNA when levels of genomic RNA are low. It follows that at a late stage in replication, the capsid may undergo dephosphorylation before nucleocapsid assembly occurs []. This family is found together with IPR008820 from INTERPRO and IPR008821 from INTERPRO.; GO: 0016021 integral to membrane, 0019013 viral nucleocapsid
Probab=25.93 E-value=1.1e+02 Score=30.00 Aligned_cols=18 Identities=39% Similarity=0.569 Sum_probs=12.8
Q ss_pred CCCCCCCCCCCCCCCCCc
Q 009552 502 MIGKQPPGPRMPDGTRGF 519 (532)
Q Consensus 502 ~~~~~ppgprmpdgtrgf 519 (532)
.++++|..|||-.|-.|.
T Consensus 99 appqqpqpprmqtgrggs 116 (300)
T PF05750_consen 99 APPQQPQPPRMQTGRGGS 116 (300)
T ss_pred CCcCCCCCcccccCCCCC
Confidence 456789999998665443
No 220
>PRK09752 adhesin; Provisional
Probab=25.25 E-value=69 Score=39.43 Aligned_cols=7 Identities=14% Similarity=0.572 Sum_probs=2.8
Q ss_pred cccccch
Q 009552 234 ISTVASF 240 (532)
Q Consensus 234 i~~i~sF 240 (532)
+-+++.+
T Consensus 1032 lGVMaGY 1038 (1250)
T PRK09752 1032 LGIVGGY 1038 (1250)
T ss_pred EEEEEEE
Confidence 3344444
No 221
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=24.53 E-value=1.7e+02 Score=26.12 Aligned_cols=44 Identities=23% Similarity=0.421 Sum_probs=30.8
Q ss_pred HHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 302 HQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 302 ~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
..+|.++.+++| |.+.+|..+... +-.|+|+|+.+.+..-.++.
T Consensus 26 WPE~~a~lk~ag-i~nYSIfLde~~-------------------n~lFgy~E~~d~~a~m~~~a 69 (105)
T COG3254 26 WPELLALLKEAG-IRNYSIFLDEEE-------------------NLLFGYWEYEDFEADMAKMA 69 (105)
T ss_pred cHHHHHHHHHcC-CceeEEEecCCc-------------------ccEEEEEEEcChHHHHHHHh
Confidence 457888999997 677888665321 24599999996665555544
No 222
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=24.06 E-value=3.7e+02 Score=21.29 Aligned_cols=52 Identities=21% Similarity=0.355 Sum_probs=32.8
Q ss_pred CcHHHHHHHhhhcC-CeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCC---HHHHHHHHHHHcC
Q 009552 300 HCHQNLMKIFSAVG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES---VELAEKAIAELND 369 (532)
Q Consensus 300 ~t~edL~elFs~fG-~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet---~E~AekAv~~Ln~ 369 (532)
-+..+|-++|+.+| +|..|.-+ |. ..+ .+.-..||+++. .+..+++++.|..
T Consensus 11 G~L~~vL~~f~~~~vni~~I~Sr-p~--------~~~---------~~~~~f~id~~~~~~~~~~~~~l~~l~~ 66 (75)
T cd04880 11 GALAKALKVFAERGINLTKIESR-PS--------RKG---------LWEYEFFVDFEGHIDDPDVKEALEELKR 66 (75)
T ss_pred CHHHHHHHHHHHCCCCEEEEEee-ec--------CCC---------CceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 34678889999987 56666332 21 000 013368899984 5667788887764
No 223
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=23.78 E-value=87 Score=32.34 Aligned_cols=30 Identities=30% Similarity=0.331 Sum_probs=21.6
Q ss_pred EEEEeCCHHHHHHHHHHHcCCCCCCCceEEEE
Q 009552 350 AFVEYESVELAEKAIAELNDEGNWRSGLRVRL 381 (532)
Q Consensus 350 AFVEFet~E~AekAv~~Ln~~~~~~~glrV~l 381 (532)
|||+|++..+|..|++.+.... .+.+++..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~ 30 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSP 30 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEee
Confidence 7999999999999998655332 34454443
No 224
>PRK06545 prephenate dehydrogenase; Validated
Probab=22.78 E-value=2.3e+02 Score=30.03 Aligned_cols=61 Identities=16% Similarity=0.123 Sum_probs=39.8
Q ss_pred eeEEEecCCCcCcHHHHHHHhhhcC-CeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHH
Q 009552 289 RIVVAENLPEDHCHQNLMKIFSAVG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (532)
Q Consensus 289 rtVyV~nLP~d~t~edL~elFs~fG-~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~L 367 (532)
..|||.=-++-=....|-.+....| +|++|+|.+-+. ...|..-++|.+.+++++|.+.|
T Consensus 291 ~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~-------------------~~~g~~~~~~~~~~~~~~~~~~~ 351 (359)
T PRK06545 291 YDLYVDVPDEPGVIARVTAILGEEGISIENLRILEARE-------------------DIHGVLQISFKNEEDRERAKALL 351 (359)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccC-------------------CcCceEEEEeCCHHHHHHHHHHH
Confidence 3455542222224456666666666 789999865321 01457889999999999999877
Q ss_pred c
Q 009552 368 N 368 (532)
Q Consensus 368 n 368 (532)
.
T Consensus 352 ~ 352 (359)
T PRK06545 352 E 352 (359)
T ss_pred H
Confidence 5
No 225
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=22.73 E-value=2.7e+02 Score=22.41 Aligned_cols=56 Identities=23% Similarity=0.297 Sum_probs=40.8
Q ss_pred eeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCC-HHHHHHHHHHH
Q 009552 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES-VELAEKAIAEL 367 (532)
Q Consensus 289 rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet-~E~AekAv~~L 367 (532)
.++.|.++-=..+...+++..+...-|..|.+-.+ ++.++|+|++ ..+.++.++.+
T Consensus 4 ~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~-----------------------~~~~~V~~d~~~~~~~~i~~ai 60 (71)
T COG2608 4 TTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLE-----------------------KGTATVTFDSNKVDIEAIIEAI 60 (71)
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcc-----------------------cCeEEEEEcCCcCCHHHHHHHH
Confidence 47888888778888999999999887999988432 3459999998 33444444433
No 226
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=21.97 E-value=2.2e+02 Score=31.99 Aligned_cols=120 Identities=16% Similarity=0.177 Sum_probs=0.0
Q ss_pred cccccchhhHHHhhhcH--HHHHHhhhcCCceEEeeccc---eeeccCCCcchhhhhccceeEEEecCCCcCcHHHHHH-
Q 009552 234 ISTVASFKKIKAIISSH--SHLASVLRKSSKLVVSEDGK---KIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMK- 307 (532)
Q Consensus 234 i~~i~sFkKmK~Lt~d~--~~I~eALr~S~~LeVsedg~---kVRR~~pl~e~d~~~~~~rtVyV~nLP~d~t~edL~e- 307 (532)
+.+.+--.|.++...+. ++|.++|+...-.++=.|-+ ++--+..++..+.-++.---|+|+ |..-|...|++
T Consensus 95 ~R~ntRe~R~r~~Le~er~e~I~~~lk~nP~fkpP~DYk~p~~~~~Kv~IPvke~Pd~NFvGLiiG--PRG~TqK~lE~e 172 (554)
T KOG0119|consen 95 KRLNTREQRARKKLEDERHEIIEEILKLNPGFKPPADYKPPAKLHDKVYIPVKEFPDINFVGLIIG--PRGNTQKRLERE 172 (554)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCcccCcccccccceecchhhcCCcceeEEEec--CCccHHHHHHHH
Q ss_pred ------HhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHHcC
Q 009552 308 ------IFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (532)
Q Consensus 308 ------lFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~Ln~ 369 (532)
||.+ |+|+.=+...+..... ...---++|+|+=+|.|..++|++.+.+
T Consensus 173 tgAKI~IRGk-gSvkEgk~~~~d~~~~-------------~~~~epLH~~Isadt~eki~~Ai~vien 226 (554)
T KOG0119|consen 173 TGAKIAIRGK-GSVKEGKGRSDDLSYI-------------PKENEPLHCLISADTQEKIKKAIAVIEN 226 (554)
T ss_pred hCCeEEEecc-ccccccccCCcccccc-------------cccccceeEEEecchHHHHHHHHHHHHH
No 227
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.88 E-value=5.1e+02 Score=22.14 Aligned_cols=50 Identities=12% Similarity=0.238 Sum_probs=29.1
Q ss_pred cHHHHHHHhhhcCCeeEEEEe-CCCCCCCCCCCCCCcccccCcccccccEEEEEeCC--HHHHHHHHHHHc
Q 009552 301 CHQNLMKIFSAVGSVKTIRTC-LPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES--VELAEKAIAELN 368 (532)
Q Consensus 301 t~edL~elFs~fG~V~~Vri~-~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet--~E~AekAv~~Ln 368 (532)
+.-++.+.|+.+| |.-.+|. || +..+. + .-.-||+|+- .+..++|++.|.
T Consensus 27 sL~~vL~~Fa~~~-INLt~IeSRP--------~~~~~-----~----~Y~FfVDieg~~~~~~~~~l~~L~ 79 (90)
T cd04931 27 ALAKVLRLFEEKD-INLTHIESRP--------SRLNK-----D----EYEFFINLDKKSAPALDPIIKSLR 79 (90)
T ss_pred HHHHHHHHHHHCC-CCEEEEEecc--------CCCCC-----c----eEEEEEEEEcCCCHHHHHHHHHHH
Confidence 4667888999987 3334442 12 11111 1 3367888884 455667777775
No 228
>COG1859 KptA RNA:NAD 2'-phosphotransferase [Translation, ribosomal structure and biogenesis]
Probab=21.65 E-value=1.1e+02 Score=30.46 Aligned_cols=81 Identities=16% Similarity=0.153 Sum_probs=46.2
Q ss_pred hccCCCCceecccccchhhHHHhhhcHHHHHHhhhcCCc--eEEeeccceeeccCCCc-c---hhhhhccceeEEEecCC
Q 009552 224 ILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSK--LVVSEDGKKIKRQNPLT-E---SDLEELQSRIVVAENLP 297 (532)
Q Consensus 224 i~kd~dG~Vpi~~i~sFkKmK~Lt~d~~~I~eALr~S~~--LeVsedg~kVRR~~pl~-e---~d~~~~~~rtVyV~nLP 297 (532)
++.|.+||+.|+.++.--+-+---.+.+.|..++..+.+ .++++ .+||-..-.. + .-.+......||
T Consensus 52 l~lD~~Gwa~i~~l~~~~~k~~~~~~~~~l~~iV~~d~K~Rf~l~~--~~IRA~yGHSi~V~l~~~~~~~p~~Ly----- 124 (211)
T COG1859 52 LRLDEEGWADIDELLEGLRKAGRWLTRELLLAVVATDDKGRFELKE--GKIRARYGHSIPVDLRLPEAEPPAVLY----- 124 (211)
T ss_pred eeeccccchhHHHHHHHHHhhccCCCHHHHHHHHhcCCCceeEecc--cceeeccCcceEEeccCCCCCCCcEEE-----
Confidence 457899999998887654433223466777777777654 55655 4666554221 0 001111223555
Q ss_pred CcCcHHHHHHHhhh
Q 009552 298 EDHCHQNLMKIFSA 311 (532)
Q Consensus 298 ~d~t~edL~elFs~ 311 (532)
..++.+.|..|.+.
T Consensus 125 hGTs~~~l~~I~~~ 138 (211)
T COG1859 125 HGTSPEFLPSILEE 138 (211)
T ss_pred ecCChhhhHHHHHh
Confidence 44666777766654
No 229
>PF12993 DUF3877: Domain of unknown function, E. rectale Gene description (DUF3877); InterPro: IPR024539 This entry represents proteins of unknown function found primarily in Firmicutes. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=21.43 E-value=1.7e+02 Score=28.41 Aligned_cols=17 Identities=6% Similarity=0.325 Sum_probs=15.6
Q ss_pred CcCcHHHHHHHhhhcCC
Q 009552 298 EDHCHQNLMKIFSAVGS 314 (532)
Q Consensus 298 ~d~t~edL~elFs~fG~ 314 (532)
.++|.++|.++|.+|+.
T Consensus 107 hgcT~e~I~~~F~~ys~ 123 (175)
T PF12993_consen 107 HGCTLEDILELFHKYSD 123 (175)
T ss_pred CCcCHHHHHHHHHHhcC
Confidence 57899999999999996
No 230
>COG1098 VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]
Probab=21.07 E-value=1.8e+02 Score=26.78 Aligned_cols=36 Identities=25% Similarity=0.386 Sum_probs=30.0
Q ss_pred EEEEEeCC--------HHHHHHHHHHHcCCCCCCCceEEEEeee
Q 009552 349 HAFVEYES--------VELAEKAIAELNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 349 ~AFVEFet--------~E~AekAv~~Ln~~~~~~~glrV~l~~k 384 (532)
-|||+|+. .|-|...|+.+++....+..+.|.++..
T Consensus 20 GAFV~l~~g~tGLVHISEIa~~fVkdI~d~L~vG~eV~vKVl~i 63 (129)
T COG1098 20 GAFVELEGGKTGLVHISEIADGFVKDIHDHLKVGQEVKVKVLDI 63 (129)
T ss_pred ceEEEecCCCcceEEehHhhhhhHHhHHHHhcCCCEEEEEEEee
Confidence 39999998 7889999999998777778888888764
No 231
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=20.77 E-value=3.4e+02 Score=22.76 Aligned_cols=56 Identities=14% Similarity=0.217 Sum_probs=36.9
Q ss_pred EEecCCCcCcHHHHHHHhhh-cC-CeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHH
Q 009552 292 VAENLPEDHCHQNLMKIFSA-VG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (532)
Q Consensus 292 yV~nLP~d~t~edL~elFs~-fG-~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~L 367 (532)
|+=.++.+++..+|++.++. || .|..|+++.-. .+ .| =|||.+..-++|......|
T Consensus 17 y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~-----------~~--------~K-KA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 17 LTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP-----------RG--------EK-KAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-----------CC--------ce-EEEEEECCCCcHHHHHHhh
Confidence 33345578888888888877 55 67777765321 00 01 3999999888887766544
No 232
>CHL00030 rpl23 ribosomal protein L23
Probab=20.42 E-value=3.8e+02 Score=23.27 Aligned_cols=31 Identities=6% Similarity=0.113 Sum_probs=21.6
Q ss_pred EEecCCCcCcHHHHHHHhhh-cC-CeeEEEEeC
Q 009552 292 VAENLPEDHCHQNLMKIFSA-VG-SVKTIRTCL 322 (532)
Q Consensus 292 yV~nLP~d~t~edL~elFs~-fG-~V~~Vri~~ 322 (532)
|+=-++.+++..+|++.++. || .|..|+++.
T Consensus 22 y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~ 54 (93)
T CHL00030 22 YTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHR 54 (93)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEE
Confidence 33344578888888888877 55 677777654
No 233
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=20.38 E-value=43 Score=27.20 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=17.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHc
Q 009552 347 KLHAFVEYESVELAEKAIAELN 368 (532)
Q Consensus 347 KG~AFVEFet~E~AekAv~~Ln 368 (532)
|..+|.-|++.++|..++..+.
T Consensus 44 kL~aF~pF~s~~~ALe~~~ais 65 (67)
T PF08156_consen 44 KLKAFSPFKSAEEALENANAIS 65 (67)
T ss_pred hhhhccCCCCHHHHHHHHHHhh
Confidence 4469999999999888887665
Done!