Query 009552
Match_columns 532
No_of_seqs 384 out of 2030
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 07:45:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009552.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009552hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2voo_A Lupus LA protein; RNA-b 100.0 1.3E-37 4.4E-42 298.6 14.2 170 192-381 7-183 (193)
2 1s29_A LA protein; winged heli 100.0 3.7E-29 1.3E-33 213.1 5.6 91 189-279 2-92 (92)
3 2cqk_A C-MPL binding protein; 99.9 5.4E-27 1.9E-31 202.5 4.2 86 192-279 9-94 (101)
4 1h2v_Z 20 kDa nuclear CAP bind 99.7 9.6E-18 3.3E-22 153.8 10.3 82 286-384 37-118 (156)
5 4fxv_A ELAV-like protein 1; RN 99.7 2E-16 6.7E-21 135.4 9.7 80 286-382 17-96 (99)
6 3ex7_B RNA-binding protein 8A; 99.7 4.1E-16 1.4E-20 137.6 11.3 83 286-385 20-102 (126)
7 1u6f_A Tcubp1, RNA-binding pro 99.6 5E-16 1.7E-20 139.3 10.8 87 284-387 38-124 (139)
8 3s8s_A Histone-lysine N-methyl 99.6 6.1E-16 2.1E-20 135.0 9.5 80 287-383 5-84 (110)
9 2dnz_A Probable RNA-binding pr 99.6 3.1E-15 1.1E-19 125.2 13.1 82 287-385 4-85 (95)
10 2fy1_A RNA-binding motif prote 99.6 2.4E-15 8E-20 132.1 12.6 83 286-386 5-87 (116)
11 1x5s_A Cold-inducible RNA-bind 99.6 2.7E-15 9.3E-20 127.4 12.4 83 287-386 11-93 (102)
12 3q2s_C Cleavage and polyadenyl 99.6 1.8E-16 6.2E-21 155.5 5.1 81 287-384 67-149 (229)
13 3bs9_A Nucleolysin TIA-1 isofo 99.6 1.8E-15 6.1E-20 124.5 10.0 81 287-384 5-85 (87)
14 1whw_A Hypothetical protein ri 99.6 2.6E-15 8.9E-20 126.8 11.3 83 286-385 6-88 (99)
15 2dgs_A DAZ-associated protein 99.6 4.3E-15 1.5E-19 125.6 12.4 83 286-386 8-90 (99)
16 1p27_B RNA-binding protein 8A; 99.6 3.8E-15 1.3E-19 127.3 11.8 83 286-385 21-103 (106)
17 2dgp_A Bruno-like 4, RNA bindi 99.6 4.2E-15 1.4E-19 127.1 11.5 83 285-384 10-95 (106)
18 2lxi_A RNA-binding protein 10; 99.6 4.3E-16 1.5E-20 131.1 5.2 79 288-383 1-81 (91)
19 1x5u_A Splicing factor 3B subu 99.6 3.2E-15 1.1E-19 127.6 10.5 82 286-384 13-94 (105)
20 4f25_A Polyadenylate-binding p 99.6 2E-15 6.8E-20 132.1 9.4 78 288-384 5-82 (115)
21 1x5t_A Splicing factor 3B subu 99.6 2.3E-15 8E-20 126.2 8.9 82 287-385 4-86 (96)
22 2cph_A RNA binding motif prote 99.6 6.8E-15 2.3E-19 125.8 12.0 84 285-385 12-97 (107)
23 2cqd_A RNA-binding region cont 99.6 3.4E-15 1.2E-19 130.0 10.1 82 285-384 14-95 (116)
24 2do4_A Squamous cell carcinoma 99.6 3.6E-15 1.2E-19 126.3 9.9 82 285-384 14-95 (100)
25 2dnm_A SRP46 splicing factor; 99.6 3.8E-15 1.3E-19 126.8 10.0 81 287-384 12-92 (103)
26 3md1_A Nuclear and cytoplasmic 99.6 4.7E-15 1.6E-19 120.9 10.0 79 289-384 2-80 (83)
27 2dgo_A Cytotoxic granule-assoc 99.6 7.7E-15 2.6E-19 127.4 12.0 84 286-386 13-96 (115)
28 3p5t_L Cleavage and polyadenyl 99.6 1.4E-15 4.8E-20 126.9 7.0 80 289-385 2-83 (90)
29 3ns6_A Eukaryotic translation 99.6 2.1E-15 7.1E-20 128.8 8.2 81 287-384 5-92 (100)
30 2dgu_A Heterogeneous nuclear r 99.6 5.1E-15 1.8E-19 126.4 10.6 76 287-387 10-85 (103)
31 1sjq_A Polypyrimidine tract-bi 99.6 1.6E-15 5.6E-20 132.1 7.5 74 287-383 15-90 (105)
32 2cqb_A Peptidyl-prolyl CIS-tra 99.6 2.6E-15 8.8E-20 127.5 8.6 82 287-385 11-92 (102)
33 2d9p_A Polyadenylate-binding p 99.6 5.6E-15 1.9E-19 125.8 10.7 82 286-386 13-94 (103)
34 3r27_A HnRNP L, heterogeneous 99.6 3.8E-15 1.3E-19 128.7 9.6 73 287-382 20-94 (100)
35 2dnh_A Bruno-like 5, RNA bindi 99.6 9.6E-15 3.3E-19 124.6 12.0 82 287-386 14-98 (105)
36 2x1f_A MRNA 3'-END-processing 99.6 4E-15 1.4E-19 125.3 9.5 80 288-384 2-81 (96)
37 2cq0_A Eukaryotic translation 99.6 2.5E-15 8.5E-20 128.0 8.3 83 286-385 13-95 (103)
38 1s79_A Lupus LA protein; RRM, 99.6 4.6E-15 1.6E-19 128.1 10.0 80 285-383 8-87 (103)
39 1wex_A Hypothetical protein (r 99.6 6.5E-15 2.2E-19 127.6 10.8 75 287-384 14-90 (104)
40 1x4d_A Matrin 3; structural ge 99.6 2.6E-15 8.8E-20 130.0 8.2 75 287-384 14-91 (102)
41 1x4h_A RNA-binding protein 28; 99.6 5.8E-15 2E-19 127.0 10.2 82 286-384 13-100 (111)
42 2ad9_A Polypyrimidine tract-bi 99.6 5.4E-15 1.9E-19 131.5 10.3 77 287-386 30-108 (119)
43 2lkz_A RNA-binding protein 5; 99.6 2E-15 6.9E-20 128.7 7.2 78 288-382 9-92 (95)
44 3mdf_A Peptidyl-prolyl CIS-tra 99.6 3.2E-15 1.1E-19 122.4 8.2 79 287-382 6-84 (85)
45 2cqi_A Nucleolysin TIAR; RNA r 99.6 7.6E-15 2.6E-19 125.0 10.7 80 286-384 13-92 (103)
46 1oo0_B CG8781-PA, drosophila Y 99.6 6.5E-15 2.2E-19 126.9 10.4 83 286-385 24-106 (110)
47 2cpz_A CUG triplet repeat RNA- 99.6 3.3E-15 1.1E-19 129.9 8.6 82 286-384 23-104 (115)
48 4a8x_A RNA-binding protein wit 99.6 4.5E-15 1.5E-19 122.2 8.9 81 287-383 3-83 (88)
49 2adc_A Polypyrimidine tract-bi 99.6 2.9E-14 9.8E-19 138.4 16.1 74 288-383 151-226 (229)
50 2cq4_A RNA binding motif prote 99.6 3.1E-15 1E-19 129.9 8.2 84 283-384 20-103 (114)
51 1x4a_A Splicing factor, argini 99.6 7.3E-15 2.5E-19 126.5 10.4 79 286-384 20-98 (109)
52 2cq3_A RNA-binding protein 9; 99.6 1.3E-14 4.4E-19 123.6 11.6 82 286-386 13-94 (103)
53 2la6_A RNA-binding protein FUS 99.6 9E-15 3.1E-19 123.8 10.4 79 287-382 12-98 (99)
54 2e5h_A Zinc finger CCHC-type a 99.6 4.8E-15 1.6E-19 123.8 8.6 79 287-382 15-93 (94)
55 1x4c_A Splicing factor, argini 99.6 8.7E-15 3E-19 126.3 10.4 76 287-386 14-94 (108)
56 3ucg_A Polyadenylate-binding p 99.6 4.7E-15 1.6E-19 122.5 8.2 80 285-382 3-82 (89)
57 2dnq_A RNA-binding protein 4B; 99.6 1.9E-14 6.4E-19 119.7 11.5 74 287-385 7-80 (90)
58 2kxn_B Transformer-2 protein h 99.6 7.2E-15 2.5E-19 131.6 9.6 81 287-384 45-125 (129)
59 2cqc_A Arginine/serine-rich sp 99.6 5.9E-15 2E-19 123.3 8.4 79 287-382 14-92 (95)
60 2ywk_A Putative RNA-binding pr 99.6 6.5E-15 2.2E-19 123.3 8.6 79 286-382 14-92 (95)
61 3pgw_S U1-70K; protein-RNA com 99.6 2.8E-14 9.7E-19 152.5 15.7 84 286-386 100-183 (437)
62 2cpe_A RNA-binding protein EWS 99.6 6E-15 2.1E-19 127.7 8.6 83 285-384 12-102 (113)
63 1wi8_A EIF-4B, eukaryotic tran 99.6 9.6E-15 3.3E-19 124.7 9.6 81 287-385 14-94 (104)
64 2cq1_A PTB-like protein L; RRM 99.6 8.8E-15 3E-19 126.2 9.2 75 287-384 14-90 (101)
65 2jrs_A RNA-binding protein 39; 99.6 1.1E-14 3.7E-19 126.2 9.8 82 286-384 24-105 (108)
66 2do0_A HnRNP M, heterogeneous 99.6 1.4E-14 4.8E-19 125.3 10.6 80 287-384 14-93 (114)
67 1p1t_A Cleavage stimulation fa 99.6 5.3E-15 1.8E-19 125.8 7.7 82 286-384 6-87 (104)
68 2khc_A Testis-specific RNP-typ 99.6 4.9E-15 1.7E-19 129.2 7.6 81 285-382 37-117 (118)
69 2cpf_A RNA binding motif prote 99.6 6E-15 2.1E-19 124.3 7.9 84 287-384 4-87 (98)
70 2div_A TRNA selenocysteine ass 99.6 6.8E-15 2.3E-19 124.2 8.2 79 287-382 8-91 (99)
71 3ulh_A THO complex subunit 4; 99.6 1.2E-14 4.1E-19 124.4 9.8 78 287-382 28-105 (107)
72 2dnp_A RNA-binding protein 14; 99.6 1.2E-14 4.1E-19 120.9 9.4 75 286-385 7-81 (90)
73 2wbr_A GW182, gawky, LD47780P; 99.5 7E-15 2.4E-19 124.2 7.9 73 287-382 6-78 (89)
74 1whx_A Hypothetical protein ri 99.5 1.8E-14 6.2E-19 125.4 10.8 77 286-385 8-84 (111)
75 1x4f_A Matrin 3; structural ge 99.5 8.6E-15 3E-19 128.9 8.6 76 287-385 24-102 (112)
76 1why_A Hypothetical protein ri 99.5 2.1E-14 7.3E-19 121.1 10.7 75 287-384 16-92 (97)
77 2kvi_A Nuclear polyadenylated 99.5 2.1E-14 7E-19 121.2 10.6 75 286-385 8-83 (96)
78 2dgx_A KIAA0430 protein; RRM d 99.5 1.6E-14 5.4E-19 122.1 9.6 79 287-385 8-90 (96)
79 2dgv_A HnRNP M, heterogeneous 99.5 1.9E-14 6.6E-19 119.6 10.0 79 287-384 7-85 (92)
80 2dhg_A TRNA selenocysteine ass 99.5 1.7E-14 6E-19 122.8 9.9 80 287-384 8-89 (104)
81 2cpj_A Non-POU domain-containi 99.5 1.5E-14 5.1E-19 122.4 9.3 77 286-385 13-89 (99)
82 2kn4_A Immunoglobulin G-bindin 99.5 4.8E-14 1.6E-18 128.9 13.4 83 286-385 68-150 (158)
83 2dgt_A RNA-binding protein 30; 99.5 1.7E-14 5.8E-19 120.5 9.5 74 286-384 8-81 (92)
84 3n9u_C Cleavage and polyadenyl 99.5 1.1E-14 3.6E-19 134.9 8.7 81 287-384 54-136 (156)
85 2hvz_A Splicing factor, argini 99.5 3.4E-14 1.2E-18 120.5 11.1 75 289-385 1-75 (101)
86 1uaw_A Mouse-musashi-1; RNP-ty 99.5 8.7E-15 3E-19 117.6 7.0 76 289-382 1-76 (77)
87 2dng_A Eukaryotic translation 99.5 2.1E-14 7.1E-19 122.4 9.7 79 287-384 14-92 (103)
88 2err_A Ataxin-2-binding protei 99.5 1.2E-14 4E-19 125.9 8.3 81 285-384 26-106 (109)
89 1x4g_A Nucleolysin TIAR; struc 99.5 1.9E-14 6.5E-19 124.1 9.4 77 285-384 22-98 (109)
90 2jwn_A Embryonic polyadenylate 99.5 1.5E-14 5.1E-19 127.2 8.8 83 283-383 31-113 (124)
91 2cpi_A CCR4-NOT transcription 99.5 6.6E-15 2.3E-19 127.8 6.4 87 285-385 12-101 (111)
92 2e5j_A Methenyltetrahydrofolat 99.5 2.2E-14 7.7E-19 121.1 9.5 76 287-384 18-93 (97)
93 2kt5_A RNA and export factor-b 99.5 3.9E-14 1.3E-18 124.9 11.1 81 287-385 34-114 (124)
94 3s7r_A Heterogeneous nuclear r 99.5 1.5E-14 5.1E-19 119.3 7.8 79 285-381 8-86 (87)
95 2dis_A Unnamed protein product 99.5 2.7E-14 9.3E-19 122.6 9.5 82 287-385 7-92 (109)
96 3md3_A Nuclear and cytoplasmic 99.5 8.9E-14 3.1E-18 125.6 13.3 81 286-383 85-165 (166)
97 1x4b_A Heterogeneous nuclear r 99.5 1.7E-14 6E-19 125.5 8.3 81 285-383 24-104 (116)
98 2lea_A Serine/arginine-rich sp 99.5 2E-14 6.8E-19 129.6 8.8 83 285-384 44-126 (135)
99 2ki2_A SS-DNA binding protein 99.5 9.7E-15 3.3E-19 121.2 6.2 80 289-386 2-81 (90)
100 1x4e_A RNA binding motif, sing 99.5 1.1E-14 3.8E-19 119.6 6.4 73 287-376 4-76 (85)
101 2krb_A Eukaryotic translation 99.5 1.5E-14 5.1E-19 118.2 7.2 73 288-379 1-80 (81)
102 2ytc_A PRE-mRNA-splicing facto 99.5 1.9E-14 6.5E-19 117.9 7.8 74 286-382 10-84 (85)
103 2rs2_A Musashi-1, RNA-binding 99.5 2.2E-14 7.4E-19 124.4 8.4 81 286-384 23-103 (109)
104 2cqp_A RNA-binding protein 12; 99.5 9.6E-15 3.3E-19 123.1 6.0 80 287-383 14-93 (98)
105 1x5o_A RNA binding motif, sing 99.5 4.3E-14 1.5E-18 122.5 10.1 80 286-383 23-110 (114)
106 2ek1_A RNA-binding protein 12; 99.5 1E-14 3.5E-19 122.0 5.8 79 287-382 14-92 (95)
107 2xnq_A Nuclear polyadenylated 99.5 4.5E-14 1.5E-18 119.9 9.6 74 285-383 19-93 (97)
108 2qfj_A FBP-interacting repress 99.5 4.3E-14 1.5E-18 133.8 10.5 83 286-385 123-205 (216)
109 2m2b_A RNA-binding protein 10; 99.5 1.6E-14 5.4E-19 129.0 6.9 81 286-384 21-107 (131)
110 2mss_A Protein (musashi1); RNA 99.5 2.5E-14 8.6E-19 114.7 7.4 74 290-381 1-74 (75)
111 3beg_B Splicing factor, argini 99.5 6.4E-14 2.2E-18 122.6 10.6 66 287-376 15-80 (115)
112 2i2y_A Fusion protein consists 99.5 1.7E-13 5.8E-18 124.6 13.7 78 285-384 70-147 (150)
113 1wez_A HnRNP H', FTP-3, hetero 99.5 3.5E-14 1.2E-18 122.0 8.7 79 286-384 13-91 (102)
114 2dh8_A DAZ-associated protein 99.5 1.2E-14 4.2E-19 124.1 5.8 80 286-383 14-93 (105)
115 1rk8_A CG8781-PA, CG8781-PA pr 99.5 4.9E-14 1.7E-18 130.7 10.3 85 286-387 70-154 (165)
116 2la4_A Nuclear and cytoplasmic 99.5 1.9E-14 6.7E-19 122.0 6.9 73 287-382 26-98 (101)
117 2jvr_A Nucleolar protein 3; RN 99.5 2.2E-14 7.4E-19 125.9 7.4 76 287-383 27-103 (111)
118 2cqh_A IGF-II mRNA-binding pro 99.5 2.8E-14 9.5E-19 119.2 7.8 74 287-384 7-82 (93)
119 2j76_E EIF-4B, EIF4B, eukaryot 99.5 2.1E-14 7.1E-19 122.2 6.9 82 285-384 16-97 (100)
120 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 3E-14 1E-18 127.1 8.2 79 286-381 61-139 (140)
121 3lqv_A PRE-mRNA branch site pr 99.5 9.3E-14 3.2E-18 120.5 11.0 78 287-384 7-84 (115)
122 2cqg_A TDP-43, TAR DNA-binding 99.5 5.5E-14 1.9E-18 119.6 9.3 79 286-383 13-91 (103)
123 2jvo_A Nucleolar protein 3; nu 99.5 3.1E-14 1.1E-18 123.5 7.8 76 284-384 27-102 (108)
124 2cpd_A Apobec-1 stimulating pr 99.5 7.4E-14 2.5E-18 118.2 9.8 72 287-383 14-87 (99)
125 1wg5_A Heterogeneous nuclear r 99.5 5.9E-14 2E-18 120.4 9.1 78 287-383 14-92 (104)
126 1fj7_A Nucleolin RBD1, protein 99.5 1.4E-14 4.9E-19 122.8 5.1 81 285-384 14-94 (101)
127 2cpx_A Hypothetical protein FL 99.5 9.6E-14 3.3E-18 120.3 9.7 79 287-386 24-106 (115)
128 4f02_A Polyadenylate-binding p 99.5 1E-13 3.6E-18 133.0 11.0 82 284-384 99-180 (213)
129 2cpy_A RNA-binding protein 12; 99.5 2.4E-14 8.2E-19 124.8 5.7 80 286-384 13-93 (114)
130 2dgw_A Probable RNA-binding pr 99.5 6.3E-14 2.1E-18 116.6 8.0 79 286-384 8-86 (91)
131 2a3j_A U1 small nuclear ribonu 99.5 1.1E-13 3.8E-18 124.1 10.2 78 287-384 28-109 (127)
132 2db1_A Heterogeneous nuclear r 99.5 2.5E-14 8.6E-19 125.8 5.7 79 287-384 16-97 (118)
133 1wf1_A RNA-binding protein RAL 99.5 8.5E-14 2.9E-18 120.1 8.7 72 287-383 26-98 (110)
134 2lcw_A RNA-binding protein FUS 99.2 3.6E-15 1.2E-19 130.0 0.0 84 285-385 4-95 (116)
135 1iqt_A AUF1, heterogeneous nuc 99.5 4.1E-14 1.4E-18 113.2 5.8 74 290-381 1-74 (75)
136 2nlw_A Eukaryotic translation 99.5 6E-14 2.1E-18 120.5 7.1 78 287-383 14-98 (105)
137 3nmr_A Cugbp ELAV-like family 99.5 2.1E-13 7.1E-18 124.5 11.0 79 286-382 93-174 (175)
138 1l3k_A Heterogeneous nuclear r 99.5 1.8E-13 6.1E-18 127.6 10.8 83 286-386 102-184 (196)
139 2e44_A Insulin-like growth fac 99.5 2E-13 6.9E-18 114.5 9.9 78 287-385 14-92 (96)
140 2hzc_A Splicing factor U2AF 65 99.5 1.1E-13 3.7E-18 113.7 8.1 70 287-380 5-85 (87)
141 2hgl_A HNRPF protein, heteroge 99.5 4.6E-14 1.6E-18 128.1 6.1 78 287-383 43-123 (136)
142 2hgn_A Heterogeneous nuclear r 99.5 3.4E-14 1.2E-18 129.5 5.0 79 286-384 44-122 (139)
143 2fc9_A NCL protein; structure 99.5 1.2E-13 4E-18 117.1 8.0 78 286-384 13-90 (101)
144 2lmi_A GRSF-1, G-rich sequence 99.5 5.2E-14 1.8E-18 121.3 5.8 80 286-384 9-91 (107)
145 1nu4_A U1A RNA binding domain; 99.5 1.2E-13 4E-18 116.0 7.8 79 286-384 6-88 (97)
146 1b7f_A Protein (SXL-lethal pro 99.4 5.8E-13 2E-17 120.9 12.9 79 286-381 87-167 (168)
147 1wel_A RNA-binding protein 12; 99.4 3.5E-14 1.2E-18 125.4 4.4 80 287-384 24-103 (124)
148 2dnn_A RNA-binding protein 12; 99.4 1E-13 3.5E-18 121.1 7.3 77 287-383 15-91 (109)
149 4f02_A Polyadenylate-binding p 99.4 2.1E-13 7.2E-18 130.9 10.0 80 287-383 14-93 (213)
150 2f3j_A RNA and export factor b 99.4 2.5E-13 8.7E-18 128.1 10.4 80 287-384 87-166 (177)
151 1fjc_A Nucleolin RBD2, protein 99.4 1E-13 3.5E-18 116.3 6.8 78 285-384 13-90 (96)
152 2fc8_A NCL protein; structure 99.4 2E-13 6.8E-18 115.8 8.6 79 286-384 13-91 (102)
153 1fxl_A Paraneoplastic encephal 99.4 9.7E-13 3.3E-17 118.9 13.3 78 286-380 86-163 (167)
154 2g4b_A Splicing factor U2AF 65 99.4 3.9E-13 1.3E-17 122.8 10.8 79 287-382 93-171 (172)
155 3pgw_A U1-A; protein-RNA compl 99.4 2.1E-13 7.3E-18 135.2 9.8 75 287-383 206-281 (282)
156 2xs2_A Deleted in azoospermia- 99.4 1.2E-13 4.3E-18 117.2 6.5 81 285-385 6-86 (102)
157 1sjr_A Polypyrimidine tract-bi 99.4 3.5E-13 1.2E-17 126.2 9.9 75 288-383 46-122 (164)
158 1x5p_A Negative elongation fac 99.4 4.1E-13 1.4E-17 113.3 9.3 73 287-384 14-86 (97)
159 2e5g_A U6 snRNA-specific termi 99.4 2.3E-13 7.8E-18 114.2 7.5 74 287-383 7-80 (94)
160 1fxl_A Paraneoplastic encephal 99.4 5.3E-13 1.8E-17 120.6 9.8 79 288-383 2-80 (167)
161 1wg1_A KIAA1579 protein, homol 99.4 2.3E-13 8E-18 112.9 6.7 74 287-384 4-77 (88)
162 3d2w_A TAR DNA-binding protein 99.4 5E-13 1.7E-17 111.9 8.6 73 286-384 9-81 (89)
163 3tyt_A Heterogeneous nuclear r 99.4 4.6E-13 1.6E-17 128.9 9.3 75 287-383 3-78 (205)
164 2cjk_A Nuclear polyadenylated 99.4 5.6E-13 1.9E-17 121.1 9.2 81 286-384 85-165 (167)
165 3md3_A Nuclear and cytoplasmic 99.4 6E-13 2.1E-17 120.1 9.3 78 289-384 1-78 (166)
166 2cq2_A Hypothetical protein LO 99.4 2.5E-13 8.6E-18 120.0 6.6 74 287-383 24-104 (114)
167 3egn_A RNA-binding protein 40; 99.4 3.6E-13 1.2E-17 121.5 7.6 79 287-385 44-130 (143)
168 2yh0_A Splicing factor U2AF 65 99.4 9.7E-13 3.3E-17 122.8 10.6 82 286-384 112-193 (198)
169 2hgm_A HNRPF protein, heteroge 99.4 3.1E-13 1.1E-17 121.3 6.7 77 287-383 41-119 (126)
170 1wf0_A TDP-43, TAR DNA-binding 99.4 6.4E-13 2.2E-17 109.9 7.8 73 287-385 4-76 (88)
171 2qfj_A FBP-interacting repress 99.4 1.2E-12 4E-17 123.9 10.4 81 285-382 25-105 (216)
172 2dha_A FLJ20171 protein; RRM d 99.4 2.3E-13 7.7E-18 121.5 4.9 77 287-382 22-102 (123)
173 3zzy_A Polypyrimidine tract-bi 99.4 1.3E-12 4.5E-17 117.9 9.8 73 289-383 29-102 (130)
174 2bz2_A Negative elongation fac 99.4 1.3E-12 4.4E-17 115.8 9.6 75 286-385 37-111 (121)
175 1b7f_A Protein (SXL-lethal pro 99.4 7.8E-13 2.7E-17 120.1 8.4 81 287-384 2-82 (168)
176 2dnl_A Cytoplasmic polyadenyla 99.4 6.3E-13 2.2E-17 115.8 7.3 67 287-368 7-73 (114)
177 2e5i_A Heterogeneous nuclear r 99.4 2.4E-12 8.3E-17 115.2 11.1 71 289-382 26-99 (124)
178 3nmr_A Cugbp ELAV-like family 99.4 2.2E-12 7.4E-17 117.7 10.4 72 287-373 2-73 (175)
179 1l3k_A Heterogeneous nuclear r 99.4 1.3E-12 4.6E-17 121.7 9.0 81 286-384 11-91 (196)
180 1fje_B Nucleolin RBD12, protei 99.3 2.7E-12 9.2E-17 117.9 10.5 77 285-383 96-172 (175)
181 1qm9_A Polypyrimidine tract-bi 99.3 8.6E-12 2.9E-16 117.1 13.3 74 288-383 120-195 (198)
182 3u1l_A PRE-mRNA-splicing facto 99.3 2.5E-12 8.5E-17 127.3 9.8 77 286-385 132-229 (240)
183 2diu_A KIAA0430 protein; struc 99.3 2.6E-12 9E-17 109.7 8.5 72 288-386 8-85 (96)
184 2ghp_A U4/U6 snRNA-associated 99.3 3.7E-12 1.3E-16 127.0 10.2 82 286-384 208-290 (292)
185 2adc_A Polypyrimidine tract-bi 99.3 4.4E-12 1.5E-16 122.9 10.5 77 286-384 32-109 (229)
186 2pe8_A Splicing factor 45; RRM 99.3 6.1E-12 2.1E-16 109.0 10.2 82 286-383 6-92 (105)
187 1qm9_A Polypyrimidine tract-bi 99.3 2.8E-12 9.6E-17 120.5 8.3 76 287-384 2-78 (198)
188 3pgw_A U1-A; protein-RNA compl 99.3 6.9E-12 2.4E-16 124.3 10.3 79 286-384 7-89 (282)
189 2cjk_A Nuclear polyadenylated 99.3 4.4E-12 1.5E-16 115.2 7.0 76 287-381 2-77 (167)
190 2j8a_A Histone-lysine N-methyl 99.3 3.7E-12 1.3E-16 114.8 5.6 77 289-382 3-93 (136)
191 3smz_A Protein raver-1, ribonu 99.2 1.7E-11 5.7E-16 121.7 10.4 82 285-384 181-263 (284)
192 3sde_A Paraspeckle component 1 99.2 1.4E-11 4.8E-16 121.8 9.5 75 286-383 20-94 (261)
193 3smz_A Protein raver-1, ribonu 99.2 3.3E-11 1.1E-15 119.6 11.4 82 287-385 94-175 (284)
194 3sde_A Paraspeckle component 1 99.2 4.6E-11 1.6E-15 118.1 10.8 80 287-384 95-178 (261)
195 2dit_A HIV TAT specific factor 99.2 3.7E-11 1.3E-15 104.3 8.9 77 287-384 14-101 (112)
196 2g4b_A Splicing factor U2AF 65 99.2 3E-11 1E-15 110.2 8.2 72 287-382 3-85 (172)
197 3tyt_A Heterogeneous nuclear r 99.2 2.4E-11 8.2E-16 116.8 6.9 71 287-376 122-194 (205)
198 3v4m_A Splicing factor U2AF 65 99.2 7E-11 2.4E-15 102.2 8.6 82 287-383 4-95 (105)
199 2yh0_A Splicing factor U2AF 65 99.2 3.9E-11 1.3E-15 111.9 7.1 73 287-383 3-86 (198)
200 2ghp_A U4/U6 snRNA-associated 99.1 1.2E-10 4E-15 116.0 10.3 80 287-384 116-196 (292)
201 1fje_B Nucleolin RBD12, protei 99.1 1.9E-11 6.6E-16 112.1 3.1 79 286-383 11-89 (175)
202 3ue2_A Poly(U)-binding-splicin 99.1 1.5E-10 5.3E-15 102.4 7.9 84 287-383 19-107 (118)
203 3tht_A Alkylated DNA repair pr 99.1 1.1E-10 3.6E-15 121.4 7.5 64 287-373 17-82 (345)
204 1jmt_A Splicing factor U2AF 35 99.1 8.1E-11 2.8E-15 101.6 4.5 71 293-381 20-102 (104)
205 2d9o_A DNAJ (HSP40) homolog, s 99.0 1.4E-09 4.8E-14 93.5 11.0 64 298-385 27-90 (100)
206 3s6e_A RNA-binding protein 39; 99.0 1.1E-09 3.7E-14 96.4 8.8 77 286-383 5-91 (114)
207 1owx_A Lupus LA protein, SS-B, 98.9 3E-09 1E-13 94.7 9.4 75 286-383 16-94 (121)
208 2dnr_A Synaptojanin-1; RRM dom 98.6 5.4E-08 1.9E-12 82.3 7.4 74 289-388 8-89 (91)
209 3dxb_A Thioredoxin N-terminall 98.4 4.6E-07 1.6E-11 87.1 8.8 71 300-383 141-211 (222)
210 1ufw_A Synaptojanin 2; RNP dom 98.3 4.7E-07 1.6E-11 77.0 5.1 69 288-382 15-92 (95)
211 2l9w_A U4/U6 snRNA-associated- 97.5 0.00028 9.6E-09 61.5 7.8 72 287-381 20-96 (117)
212 2dhx_A Poly (ADP-ribose) polym 96.4 0.017 5.7E-07 49.8 9.3 68 287-380 7-79 (104)
213 1wey_A Calcipressin 1; structu 96.3 0.0049 1.7E-07 53.1 5.7 72 289-383 6-82 (104)
214 1whv_A Poly(A)-specific ribonu 96.3 0.0088 3E-07 51.0 6.8 63 290-382 18-80 (100)
215 3ctr_A Poly(A)-specific ribonu 95.7 0.011 3.7E-07 50.6 5.0 54 290-368 7-60 (101)
216 1wwh_A Nucleoporin 35, nucleop 95.7 0.028 9.7E-07 49.6 7.8 69 287-381 23-91 (119)
217 3pq1_A Poly(A) RNA polymerase; 95.5 0.0065 2.2E-07 65.2 3.5 57 285-364 50-106 (464)
218 1uw4_A UPF3X; nonsense mediate 94.9 0.069 2.3E-06 44.9 7.3 68 290-372 3-70 (91)
219 2kn4_A Immunoglobulin G-bindin 93.1 0.052 1.8E-06 48.5 3.3 25 347-371 13-37 (158)
220 2l08_A Regulator of nonsense t 90.5 0.32 1.1E-05 41.3 5.0 68 289-371 10-77 (97)
221 2i2y_A Fusion protein consists 90.3 0.12 4.1E-06 45.9 2.4 35 347-382 13-48 (150)
222 3p3d_A Nucleoporin 53; structu 90.3 0.21 7.2E-06 44.7 3.9 80 289-374 8-88 (132)
223 3d45_A Poly(A)-specific ribonu 88.2 1.1 3.8E-05 48.4 8.4 56 289-370 441-496 (507)
224 3htx_A HEN1; HEN1, small RNA m 86.8 0.46 1.6E-05 54.6 4.5 89 192-281 102-209 (950)
225 2v8f_C MDIA1, profilin IIA; al 85.2 0.55 1.9E-05 29.8 2.4 8 80-87 5-12 (26)
226 2l4h_A Calcium and integrin-bi 80.6 0.25 8.6E-06 46.4 -0.8 46 192-239 30-83 (214)
227 1b34_A Protein (small nuclear 70.9 0.86 2.9E-05 39.9 0.0 8 349-356 65-72 (119)
228 1wfx_A Probable RNA 2'-phospho 68.7 4.2 0.00014 38.3 4.2 81 224-313 22-110 (186)
229 4f25_A Polyadenylate-binding p 65.6 2.6 8.7E-05 35.6 1.9 18 287-304 96-113 (115)
230 2i7a_A Calpain 13; calcium-dep 54.7 6.2 0.00021 35.7 2.6 46 190-238 18-69 (174)
231 1i4w_A Mitochondrial replicati 51.5 11 0.00037 38.9 4.0 23 289-311 143-165 (353)
232 3na8_A Putative dihydrodipicol 51.4 23 0.00077 35.6 6.4 32 289-320 151-186 (315)
233 2e1c_A Putative HTH-type trans 50.5 71 0.0024 28.8 9.1 49 300-369 98-146 (171)
234 1jh4_B PAIP1, polyadenylate-bi 50.0 7.2 0.00025 25.0 1.5 17 37-53 3-19 (26)
235 2qrj_A Saccharopine dehydrogen 49.5 7.2 0.00025 40.8 2.4 20 185-204 34-53 (394)
236 3fry_A Probable copper-exporti 49.2 53 0.0018 24.5 6.9 56 287-366 5-60 (73)
237 1d1d_A Protein (capsid protein 46.5 6.9 0.00024 38.8 1.6 28 188-215 31-60 (262)
238 2d2a_A SUFA protein; iron-sulf 41.2 8.5 0.00029 34.7 1.2 18 189-206 39-56 (145)
239 2g0c_A ATP-dependent RNA helic 39.0 82 0.0028 24.2 6.6 33 349-382 42-74 (76)
240 3dxs_X Copper-transporting ATP 32.9 1.4E+02 0.0048 21.7 7.7 57 288-367 3-63 (74)
241 3tla_A MCCF; serine protease, 31.9 9.7 0.00033 39.4 0.0 12 195-206 60-71 (371)
242 3tla_A MCCF; serine protease, 31.2 10 0.00035 39.3 0.0 6 253-258 101-106 (371)
243 4a4j_A Pacszia, cation-transpo 28.7 1.2E+02 0.0041 21.7 5.8 33 289-321 4-36 (69)
244 4ec6_A Putative uncharacterize 27.6 15 0.0005 33.8 0.4 31 195-225 55-87 (161)
245 2yjp_A Putative ABC transporte 27.6 13 0.00044 35.6 0.0 9 285-293 161-169 (291)
246 3uau_A JLPA, surface-exposed l 27.2 13 0.00045 36.9 0.0 26 362-388 309-334 (379)
247 2oar_A Large-conductance mecha 25.8 14 0.00049 34.3 0.0 11 239-249 49-60 (174)
248 3a4u_B Multiple coagulation fa 23.3 12 0.00042 32.5 -1.0 16 220-235 73-88 (143)
249 3lqv_A PRE-mRNA branch site pr 22.9 17 0.0006 29.9 -0.0 21 294-314 89-109 (115)
250 3qae_A 3-hydroxy-3-methylgluta 22.8 2.2E+02 0.0075 30.3 8.3 20 302-321 167-194 (458)
251 4faj_A PRGZ; substrate binding 22.5 18 0.00062 36.3 0.0 10 143-152 2-11 (564)
252 3c3r_A Programmed cell death 6 22.4 35 0.0012 35.1 2.1 14 190-203 35-48 (380)
253 4e8u_A Putative uncharacterize 21.5 1.5E+02 0.0053 27.3 6.0 48 289-356 13-71 (172)
254 3odm_A Pepcase, PEPC, phosphoe 21.3 26 0.0009 38.1 0.9 10 376-385 254-263 (560)
255 2yln_A Putative ABC transporte 21.3 20 0.00068 34.1 0.0 12 129-140 3-14 (283)
No 1
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=100.00 E-value=1.3e-37 Score=298.55 Aligned_cols=170 Identities=26% Similarity=0.398 Sum_probs=146.6
Q ss_pred CCChHHHHHHHhccccccCCCcccccHHHHhhhccCCCCceecccccchhhHHHhhhcHHHHHHhhhcC--CceEEeecc
Q 009552 192 GLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKS--SKLVVSEDG 269 (532)
Q Consensus 192 ~~~~e~~~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dG~Vpi~~i~sFkKmK~Lt~d~~~I~eALr~S--~~LeVsedg 269 (532)
...+++.++|++||||||||+||.+|+||+++|.++ +|||+|.+|++|+|||.|+.|.+.|++||+.| ..|+|++++
T Consensus 7 ~~~~~~~~~i~~q~e~yfs~~nl~~D~fl~~~~~~~-~g~V~l~~i~sF~r~k~l~~d~~~I~~Al~~S~~~~lev~ed~ 85 (193)
T 2voo_A 7 EKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-EGWVPLEIMIKFNRLNRLTTDFNVIVEALSKSKAELMEISEDK 85 (193)
T ss_dssp --CHHHHHHHHHHHHHHTSTTTGGGCHHHHHHHHHT-TTCEEHHHHTTSHHHHHHCCCHHHHHHHHHTCSSCCEEECTTS
T ss_pred CCcHHHHHHHHHHhheecchhhcccCHHHHHHhccc-CCcEEeHHHhhhhHHHHhcCCHHHHHHHHhhcccceEEEeccc
Confidence 445789999999999999999999999999999766 99999999999999999999999999999999 899999999
Q ss_pred ceeeccC--CCcch---hhhhccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCccc
Q 009552 270 KKIKRQN--PLTES---DLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLF 344 (532)
Q Consensus 270 ~kVRR~~--pl~e~---d~~~~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~ 344 (532)
.+|||.. |+++. ..++...++|||+|||.++|+++|+++|+.||.|..|+|+++.. +
T Consensus 86 ~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~-----------~------- 147 (193)
T 2voo_A 86 TKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-----------K------- 147 (193)
T ss_dssp SEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT-----------C-------
T ss_pred ceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC-----------C-------
Confidence 9999984 34332 23566789999999999999999999999999999999987531 1
Q ss_pred ccccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEE
Q 009552 345 SNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRL 381 (532)
Q Consensus 345 ~~KG~AFVEFet~E~AekAv~~Ln~~~~~~~glrV~l 381 (532)
..||||||+|++.++|++|++.++ ..+.++.|+|..
T Consensus 148 ~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~ 183 (193)
T 2voo_A 148 AFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILF 183 (193)
T ss_dssp CEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEE
T ss_pred CcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEE
Confidence 138999999999999999998654 456666666654
No 2
>1s29_A LA protein; winged helix-turn-helix, autoantigen, RNA-binding, RNA binding protein; 1.60A {Trypanosoma brucei} SCOP: a.4.5.46
Probab=99.95 E-value=3.7e-29 Score=213.05 Aligned_cols=91 Identities=35% Similarity=0.619 Sum_probs=87.2
Q ss_pred CCCCCChHHHHHHHhccccccCCCcccccHHHHhhhccCCCCceecccccchhhHHHhhhcHHHHHHhhhcCCceEEeec
Q 009552 189 QHGGLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSED 268 (532)
Q Consensus 189 ~~~~~~~e~~~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dG~Vpi~~i~sFkKmK~Lt~d~~~I~eALr~S~~LeVsed 268 (532)
+...+++++.++|++||||||||+||.+|+||+++|.+++||||||++|++|+|||+|+.|.++|++||+.|..|+|++|
T Consensus 2 ~~~~~~~~~~~~I~~QvEyYFSd~NL~~D~fL~~~m~~~~~G~Vpl~~i~sF~r~k~lt~d~~~i~~al~~S~~lev~ed 81 (92)
T 1s29_A 2 SHMPLSSENKQKLQKQVEFYFSDVNVQRDIFLKGKMAENAEGFVSLETLLTFKRVNSVTTDVKEVVEAIRPSEKLVLSED 81 (92)
T ss_dssp TTSCCCHHHHHHHHHHHHHHTSHHHHTTCHHHHHHHTTSTTCCEEHHHHTTSHHHHTTCSCHHHHHHHHTTCSSEEECTT
T ss_pred CCCCCCHHHHHHHHHHHHhhcchhhhccCHHHHHHhccCCCCCEEhHHHhCChhHHHHcCCHHHHHHHHhhCCeEEEeCC
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeccCCCc
Q 009552 269 GKKIKRQNPLT 279 (532)
Q Consensus 269 g~kVRR~~pl~ 279 (532)
|++|||+.|++
T Consensus 82 g~~VRR~~PlP 92 (92)
T 1s29_A 82 GLMVRRRDPLP 92 (92)
T ss_dssp SSEEEESSCCC
T ss_pred CCEEeCCCCCC
Confidence 99999999875
No 3
>2cqk_A C-MPL binding protein; LA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.46
Probab=99.93 E-value=5.4e-27 Score=202.48 Aligned_cols=86 Identities=28% Similarity=0.418 Sum_probs=81.1
Q ss_pred CCChHHHHHHHhccccccCCCcccccHHHHhhhccCCCCceecccccchhhHHHhhhcHHHHHHhhhcCCceEEeeccce
Q 009552 192 GLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKK 271 (532)
Q Consensus 192 ~~~~e~~~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dG~Vpi~~i~sFkKmK~Lt~d~~~I~eALr~S~~LeVsedg~k 271 (532)
...+++.++|++||||||||+||.+|+||+++| +.||||||++|++|+|||+|+.|.++|++||+.|.+|+|++||++
T Consensus 9 ~~~~~l~~~I~~QvEyYFSd~NL~~D~fL~~~m--d~~G~Vpl~~iasF~r~k~lt~d~~~i~~al~~S~~levsedg~k 86 (101)
T 2cqk_A 9 VSTEDLKECLKKQLEFCFSRENLSKDLYLISQM--DSDQFIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEK 86 (101)
T ss_dssp CCHHHHHHHHHHHHHHHTSHHHHHHCHHHHHHS--CTTSCEEHHHHHHCHHHHHHCCCHHHHHHHHHHSSSEEECSSSSE
T ss_pred CCHHHHHHHHHHHHHhhcchhhhccCHHHHHhh--hcCCCEEhHHHhCChHHHHHcCCHHHHHHHHHhCCcEEEcCCCCe
Confidence 456788899999999999999999999999996 689999999999999999999999999999999999999999999
Q ss_pred eeccCCCc
Q 009552 272 IKRQNPLT 279 (532)
Q Consensus 272 VRR~~pl~ 279 (532)
|||+.++.
T Consensus 87 VRr~~~~~ 94 (101)
T 2cqk_A 87 VRPSHKRC 94 (101)
T ss_dssp EEECCSCC
T ss_pred eeeCCCCC
Confidence 99998655
No 4
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.73 E-value=9.6e-18 Score=153.79 Aligned_cols=82 Identities=23% Similarity=0.182 Sum_probs=71.3
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
...++|||+|||.++|+++|+++|+.||.|..|+|+.+..++ ..++||||+|++.++|++||+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~A~~Ai~ 99 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKK-----------------TACGFCFVEYYSRADAENAMR 99 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTC-----------------CEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCC-----------------ccceEEEEEECCHHHHHHHHH
Confidence 357899999999999999999999999999999998754211 137899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeee
Q 009552 366 ELNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~k 384 (532)
.||+..++++.|+|.++..
T Consensus 100 ~l~g~~~~g~~l~V~~a~~ 118 (156)
T 1h2v_Z 100 YINGTRLDDRIIRTDWDAG 118 (156)
T ss_dssp HTTTSEETTEECEEEEESC
T ss_pred HhCCCEECCeEEEEEECCC
Confidence 9999998888888887753
No 5
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.66 E-value=2e-16 Score=135.40 Aligned_cols=80 Identities=24% Similarity=0.372 Sum_probs=70.5
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
.+.++|||+|||.++|+++|+++|++||.|..|+|++++.++ .+||||||+|++.++|++|++
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg-----------------~~kG~afV~f~~~~~A~~Ai~ 79 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAG-----------------HSLGYGFVNYVTAKDAERAIN 79 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSC-----------------CEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCC-----------------cccccEEEEECCHHHHHHHHH
Confidence 356799999999999999999999999999999998764321 138899999999999999999
Q ss_pred HHcCCCCCCCceEEEEe
Q 009552 366 ELNDEGNWRSGLRVRLM 382 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l~ 382 (532)
.||+..+.++.|+|.++
T Consensus 80 ~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 80 TLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp HHTTCEETTEECEEEEC
T ss_pred HhCCCEECCEEEEEEEe
Confidence 99999998888888765
No 6
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.66 E-value=4.1e-16 Score=137.61 Aligned_cols=83 Identities=22% Similarity=0.317 Sum_probs=72.4
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
...++|||+|||.++|+++|+++|+.||.|..|+|..+..+ + .++|||||+|++.++|++||+
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~----------~-------~~~g~afV~f~~~~~a~~A~~ 82 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRT----------G-------YLKGYTLVEYETYKEAQAAME 82 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTT----------S-------SBCSCEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC----------C-------ccceEEEEEECCHHHHHHHHH
Confidence 45789999999999999999999999999999999765321 1 137899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeec
Q 009552 366 ELNDEGNWRSGLRVRLMLRR 385 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~k~ 385 (532)
.||+..++++.|+|.++..+
T Consensus 83 ~l~g~~~~g~~l~v~~a~~~ 102 (126)
T 3ex7_B 83 GLNGQDLMGQPISVDWCFVR 102 (126)
T ss_dssp HHTTCBSSSSBCEEEESEES
T ss_pred HhCCCeeCCeEEEEEEecCC
Confidence 99999999999999887653
No 7
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.64 E-value=5e-16 Score=139.32 Aligned_cols=87 Identities=21% Similarity=0.276 Sum_probs=74.1
Q ss_pred hhccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHH
Q 009552 284 EELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (532)
Q Consensus 284 ~~~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekA 363 (532)
+....++|||+|||.++|+++|+++|+.||.|+.|+|++++.+ + ..+|||||+|++.++|++|
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~----------~-------~~~g~afV~f~~~~~a~~A 100 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRET----------R-------QSRGYGFVKFQSGSSAQQA 100 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTT----------T-------EEEEEEEEEESSHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCC----------C-------CcceEEEEEECCHHHHHHH
Confidence 3456789999999999999999999999999999999875421 1 1388999999999999999
Q ss_pred HHHHcCCCCCCCceEEEEeeecCC
Q 009552 364 IAELNDEGNWRSGLRVRLMLRRGS 387 (532)
Q Consensus 364 v~~Ln~~~~~~~glrV~l~~k~~~ 387 (532)
|+.||+..++++.|+|.++..+..
T Consensus 101 ~~~l~g~~~~g~~l~v~~a~~~~~ 124 (139)
T 1u6f_A 101 IAGLNGFNILNKRLKVALAASGHQ 124 (139)
T ss_dssp HHHTTTEECSSCEEEEEESSCCCC
T ss_pred HHHhCCCEECCeEEEEEECCCCCC
Confidence 999999999888888887765433
No 8
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.63 E-value=6.1e-16 Score=135.01 Aligned_cols=80 Identities=15% Similarity=0.114 Sum_probs=71.4
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
..++|||+||++++|+++|+++|++||.|..|+|+++..+ + .+||||||+|++.++|++||+.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t----------g-------~~rG~aFV~f~~~~~A~~Ai~~ 67 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRT----------R-------KHLGLARVLFTSTRGAKETVKN 67 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTT----------C-------CEEEEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCC----------C-------ceeeEEEEEECCHHHHHHHHHH
Confidence 5689999999999999999999999999999999876432 1 2389999999999999999999
Q ss_pred HcCCCCCCCceEEEEee
Q 009552 367 LNDEGNWRSGLRVRLML 383 (532)
Q Consensus 367 Ln~~~~~~~glrV~l~~ 383 (532)
||+..+.++.|+|.++.
T Consensus 68 lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 68 LHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp HTTCEETTEECEEEECS
T ss_pred hCCCEECCeEEEEEECC
Confidence 99999999989988764
No 9
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=3.1e-15 Score=125.19 Aligned_cols=82 Identities=21% Similarity=0.214 Sum_probs=72.1
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
..++|||+|||.++|+++|+++|++||.|..|+|+++..+ + .++|||||+|++.++|++|++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~----------~-------~~~g~afV~f~~~~~a~~A~~~ 66 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDT----------G-------RSKGYGFITFSDSECARRALEQ 66 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSS----------C-------CCCSEEEEEESCHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCC----------C-------ceeeEEEEEECCHHHHHHHHHH
Confidence 4689999999999999999999999999999999876422 1 1378999999999999999999
Q ss_pred HcCCCCCCCceEEEEeeec
Q 009552 367 LNDEGNWRSGLRVRLMLRR 385 (532)
Q Consensus 367 Ln~~~~~~~glrV~l~~k~ 385 (532)
||+..+.++.|+|.++..+
T Consensus 67 l~g~~~~g~~l~V~~a~~~ 85 (95)
T 2dnz_A 67 LNGFELAGRPMRVGHVTER 85 (95)
T ss_dssp HTTCCSSSSCCEEEESSCC
T ss_pred hCCCeeCCcEEEEEEcccc
Confidence 9999999999999887543
No 10
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.62 E-value=2.4e-15 Score=132.05 Aligned_cols=83 Identities=14% Similarity=0.232 Sum_probs=72.9
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
...++|||+|||.++|+++|+++|+.||.|..|+|+.+. + ++ .+|||||+|++.++|++|++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~----------g~-------~~g~afV~F~~~~~A~~Ai~ 66 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-T----------SK-------SRGFAFITFENPADAKNAAK 66 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-T----------TT-------CCCEEEEECSSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-C----------CC-------cccEEEEEECCHHHHHHHHH
Confidence 357899999999999999999999999999999998753 1 11 37899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeecC
Q 009552 366 ELNDEGNWRSGLRVRLMLRRG 386 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~k~~ 386 (532)
.||+..++++.|+|.++....
T Consensus 67 ~l~g~~~~g~~l~V~~a~~~~ 87 (116)
T 2fy1_A 67 DMNGKSLHGKAIKVEQAKKPS 87 (116)
T ss_dssp HCSSCBCSSSBCEEEECCCSS
T ss_pred HhCCCEECCEEEEEEECCCCC
Confidence 999999999999999876543
No 11
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.7e-15 Score=127.36 Aligned_cols=83 Identities=18% Similarity=0.270 Sum_probs=72.8
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
..++|||+|||.++|+++|+++|+.||.|..|+|+++..+ + ..+|||||+|++.++|++||+.
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~----------~-------~~~g~afV~f~~~~~A~~A~~~ 73 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRET----------Q-------RSRGFGFVTFENIDDAKDAMMA 73 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSS----------C-------SCCSEEEEECSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCC----------C-------CcccEEEEEECCHHHHHHHHHH
Confidence 5689999999999999999999999999999999765421 1 1378999999999999999999
Q ss_pred HcCCCCCCCceEEEEeeecC
Q 009552 367 LNDEGNWRSGLRVRLMLRRG 386 (532)
Q Consensus 367 Ln~~~~~~~glrV~l~~k~~ 386 (532)
||+..++++.|+|.+...+.
T Consensus 74 l~g~~~~g~~l~v~~a~~~~ 93 (102)
T 1x5s_A 74 MNGKSVDGRQIRVDQAGKSS 93 (102)
T ss_dssp HTTCCTTSCCCEEEEEECCC
T ss_pred hCCCEECCeEEEEEECCCCC
Confidence 99999999999999886543
No 12
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.62 E-value=1.8e-16 Score=155.50 Aligned_cols=81 Identities=16% Similarity=0.113 Sum_probs=71.1
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcC--CeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVG--SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG--~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv 364 (532)
..++|||+||++++|+++|+++|++|| +|+.|+|++++.++ .+||||||+|++.++|++||
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg-----------------~skGfaFV~f~~~~~a~~Ai 129 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANG-----------------QSKGFALVGVGSEASSKKLM 129 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTC-----------------CEEEEEEEEESCTTHHHHHH
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCC-----------------ccceEEEEEECCHHHHHHHH
Confidence 567999999999999999999999999 99999998765322 23899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeee
Q 009552 365 AELNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 365 ~~Ln~~~~~~~glrV~l~~k 384 (532)
+.||+..+.++.|+|.++..
T Consensus 130 ~~lng~~~~Gr~l~V~~a~~ 149 (229)
T 3q2s_C 130 DLLPKRELHGQNPVVTPVNK 149 (229)
T ss_dssp TTSTTSCBTTBCCEEEECCH
T ss_pred HHcCCCeECCEEeEEEECCC
Confidence 99999999999999998754
No 13
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.61 E-value=1.8e-15 Score=124.50 Aligned_cols=81 Identities=17% Similarity=0.173 Sum_probs=70.0
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
..++|||+|||.++++++|+++|+.||.|..|+|.++..+ + ..+|||||+|++.++|++|++.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~----------~-------~~~g~afV~f~~~~~A~~A~~~ 67 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMAT----------G-------KSKGYGFVSFFNKWDAENAIQQ 67 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT----------C-------CEEEEEEEEESSHHHHHHHHHH
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCC----------C-------ccceEEEEEECCHHHHHHHHHH
Confidence 5689999999999999999999999999999999875321 1 1378999999999999999999
Q ss_pred HcCCCCCCCceEEEEeee
Q 009552 367 LNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 367 Ln~~~~~~~glrV~l~~k 384 (532)
||+..++++.|+|.+...
T Consensus 68 l~g~~~~g~~l~v~~a~~ 85 (87)
T 3bs9_A 68 MGGQWLGGRQIRTNWATR 85 (87)
T ss_dssp HTTCEETTEECEEEEEC-
T ss_pred cCCCEECCeEEEEEecCC
Confidence 999998888888887754
No 14
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=2.6e-15 Score=126.79 Aligned_cols=83 Identities=25% Similarity=0.206 Sum_probs=71.4
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
...++|||+|||.++|+++|+++|+.||.|..|+|+++..+ + ..+|||||+|++.++|++||+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~----------~-------~~~g~afV~f~~~~~a~~A~~ 68 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLT----------K-------KPKGFAFVTFMFPEHAVKAYA 68 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTT----------C-------CCCSEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCC----------C-------CcCeEEEEEECCHHHHHHHHH
Confidence 46789999999999999999999999999999999765421 1 137899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeec
Q 009552 366 ELNDEGNWRSGLRVRLMLRR 385 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~k~ 385 (532)
.||+..+.++.|+|.+...+
T Consensus 69 ~l~g~~~~g~~l~V~~a~~~ 88 (99)
T 1whw_A 69 EVDGQVFQGRMLHVLPSTIK 88 (99)
T ss_dssp HTTTEESSSCEEEEEECCCC
T ss_pred HhCCCEECCcEEEEEEcCCC
Confidence 99998888888888876543
No 15
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=4.3e-15 Score=125.63 Aligned_cols=83 Identities=13% Similarity=0.224 Sum_probs=71.8
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
...++|||+|||.++++++|+++|+.||.|..|+|+++..+ + .++|||||+|++.++|++||+
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~----------~-------~~~g~afV~f~~~~~a~~A~~ 70 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEK----------Q-------RPRGFGFITFEDEQSVDQAVN 70 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTT----------C-------SCCSEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCC----------C-------CCCceEEEEECCHHHHHHHHH
Confidence 35789999999999999999999999999999999865422 1 137899999999999999998
Q ss_pred HHcCCCCCCCceEEEEeeecC
Q 009552 366 ELNDEGNWRSGLRVRLMLRRG 386 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~k~~ 386 (532)
|++..++++.|+|.+...+.
T Consensus 71 -~~~~~~~g~~l~V~~a~~~~ 90 (99)
T 2dgs_A 71 -MHFHDIMGKKVEVKRAEPRD 90 (99)
T ss_dssp -HCCCBSSSCBCEEEECCCCC
T ss_pred -hCCCEECCeEEEEEECCCCc
Confidence 99999999999998876543
No 16
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=3.8e-15 Score=127.35 Aligned_cols=83 Identities=22% Similarity=0.317 Sum_probs=73.1
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
...++|||+|||.++++++|+++|+.||.|..|+|..+..+ + .++|||||+|++.++|++|++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~----------~-------~~~g~afV~f~~~~~a~~A~~ 83 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRT----------G-------YLKGYTLVEYETYKEAQAAME 83 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT----------S-------SEEEEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCC----------C-------ceeeEEEEEECCHHHHHHHHH
Confidence 45789999999999999999999999999999999875421 1 237899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeec
Q 009552 366 ELNDEGNWRSGLRVRLMLRR 385 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~k~ 385 (532)
.||+..++++.|+|.++..+
T Consensus 84 ~l~g~~~~g~~l~V~~a~~~ 103 (106)
T 1p27_B 84 GLNGQDLMGQPISVDWCFVR 103 (106)
T ss_dssp HHTTCBSSSSBCEEEESEES
T ss_pred HhcCCEECCcEEEEEeecCC
Confidence 99999999999999987654
No 17
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.60 E-value=4.2e-15 Score=127.07 Aligned_cols=83 Identities=17% Similarity=0.233 Sum_probs=70.7
Q ss_pred hccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHH
Q 009552 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (532)
Q Consensus 285 ~~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv 364 (532)
+...++|||+|||.++|+++|+++|++||.|..|+|+++..+ + ..+|||||+|++.++|++||
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~----------g-------~~~g~afV~f~~~~~A~~A~ 72 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFT----------G-------MHKGCAFLTYCERESALKAQ 72 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSS----------C-------SCCSEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----------C-------CcceEEEEEECCHHHHHHHH
Confidence 346789999999999999999999999999999999765422 1 13789999999999999999
Q ss_pred HHHcCCCC---CCCceEEEEeee
Q 009552 365 AELNDEGN---WRSGLRVRLMLR 384 (532)
Q Consensus 365 ~~Ln~~~~---~~~glrV~l~~k 384 (532)
+.|++..+ +++.|+|.+...
T Consensus 73 ~~l~g~~~~~~~g~~l~v~~a~~ 95 (106)
T 2dgp_A 73 SALHEQKTLPGMNRPIQVKPADS 95 (106)
T ss_dssp HHHTTTCCCTTCSSCCEEEECCC
T ss_pred HHhcCCcccCCCCceEEEEECCc
Confidence 99999876 667788877654
No 18
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.60 E-value=4.3e-16 Score=131.06 Aligned_cols=79 Identities=18% Similarity=0.254 Sum_probs=64.7
Q ss_pred ceeEEEecCCCcCcHHHHHHHhhhcC-CeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 288 SRIVVAENLPEDHCHQNLMKIFSAVG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~elFs~fG-~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
+++|||+|||.++|+++|+++|+.|| .|+.|+|++++.++ .+||||||+|++.|+|++||+.
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~-----------------~~rg~aFV~F~~~~~A~~Ai~~ 63 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSG-----------------QSRGFAFVEFSHLQDATRWMEA 63 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSC-----------------CCSSEEEEECSSHHHHHHHHHT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCC-----------------CcCceEEEEecCHHHHHHHHHh
Confidence 46899999999999999999999999 89999998764322 2378999999999999999987
Q ss_pred HcC-CCCCCCceEEEEee
Q 009552 367 LND-EGNWRSGLRVRLML 383 (532)
Q Consensus 367 Ln~-~~~~~~glrV~l~~ 383 (532)
+++ ..+.++.|+|.+..
T Consensus 64 ~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 64 NQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp TTTEEEETTEEEEEECCC
T ss_pred cCCCeEECCEEEEEEEcC
Confidence 754 34566666666554
No 19
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3.2e-15 Score=127.58 Aligned_cols=82 Identities=22% Similarity=0.179 Sum_probs=71.5
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
...++|||+|||.++|+++|+++|+.||.|..|+|+++..+ + ..+|||||+|++.++|++||+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~----------~-------~~~g~afV~f~~~~~a~~A~~ 75 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVT----------G-------QHQGYGFVEFLSEEDADYAIK 75 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSS----------C-------SBCSCEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC----------C-------cCCcEEEEEECCHHHHHHHHH
Confidence 35689999999999999999999999999999999765321 1 137899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeee
Q 009552 366 ELNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~k 384 (532)
.|++..++++.|+|.++..
T Consensus 76 ~l~g~~~~g~~l~v~~a~~ 94 (105)
T 1x5u_A 76 IMDMIKLYGKPIRVNKASA 94 (105)
T ss_dssp HSSSCBCSSCBCEEEETTT
T ss_pred HhCCCeECCeEEEEEECCC
Confidence 9999999998898887754
No 20
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.60 E-value=2e-15 Score=132.07 Aligned_cols=78 Identities=24% Similarity=0.265 Sum_probs=69.1
Q ss_pred ceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHH
Q 009552 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (532)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~L 367 (532)
..+|||+|||.++|+++|+++|+.||.|.+|+|+++.. .+||||||+|++.|+|++||+.|
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~-------------------~~kg~afV~f~~~~~A~~Ai~~l 65 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-------------------GSKGYGFVHFETQEAAERAIEKM 65 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-------------------EEEEEEEEEESCHHHHHHHHHHH
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC-------------------CCCceEEEEECCHHHHHHHHHHc
Confidence 46899999999999999999999999999999986521 13789999999999999999999
Q ss_pred cCCCCCCCceEEEEeee
Q 009552 368 NDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 368 n~~~~~~~glrV~l~~k 384 (532)
++..+.++.|+|.++..
T Consensus 66 ~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 66 NGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp TTCEETTEECEEEESSC
T ss_pred CCCEECCEEEEEEECCC
Confidence 99999888888887654
No 21
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.3e-15 Score=126.22 Aligned_cols=82 Identities=20% Similarity=0.263 Sum_probs=71.0
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEE-EEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTI-RTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~V-ri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
..++|||+|||.++|+++|+++|+.||.|..| +|+++..+ + ..+|||||+|++.++|++|++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~----------g-------~~~g~afV~f~~~~~A~~A~~ 66 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDT----------G-------NSKGYAFINFASFDASDAAIE 66 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTT----------C-------SCCSEEEEEBSSHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCC----------C-------CcCeEEEEEECCHHHHHHHHH
Confidence 46899999999999999999999999999999 99765321 1 137899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeec
Q 009552 366 ELNDEGNWRSGLRVRLMLRR 385 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~k~ 385 (532)
.||+..++++.|+|.+...+
T Consensus 67 ~l~g~~~~g~~l~v~~a~~~ 86 (96)
T 1x5t_A 67 AMNGQYLCNRPITVSYAFKK 86 (96)
T ss_dssp TTTTCEETTEECEEEESCCC
T ss_pred HcCCCEECCEEEEEEEeccc
Confidence 99999988888888877543
No 22
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=6.8e-15 Score=125.77 Aligned_cols=84 Identities=18% Similarity=0.292 Sum_probs=72.2
Q ss_pred hccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCC-CCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHH
Q 009552 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLP-QTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (532)
Q Consensus 285 ~~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p-~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekA 363 (532)
....++|||+|||.++|+++|+++|+.||.|..|+|+++ +.+ + ..+|||||+|++.++|++|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~----------~-------~~~g~afV~f~~~~~a~~A 74 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGT----------G-------AHRGFGFVDFITKQDAKKA 74 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSS----------C-------SSCSEEEEEESSHHHHHHH
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCC----------C-------CcCceEEEEECCHHHHHHH
Confidence 346789999999999999999999999999999999765 221 1 2378999999999999999
Q ss_pred HHHH-cCCCCCCCceEEEEeeec
Q 009552 364 IAEL-NDEGNWRSGLRVRLMLRR 385 (532)
Q Consensus 364 v~~L-n~~~~~~~glrV~l~~k~ 385 (532)
|+.| |+..+.++.|+|.+...+
T Consensus 75 ~~~l~~~~~~~g~~l~v~~a~~~ 97 (107)
T 2cph_A 75 FNALCHSTHLYGRRLVLEWADSE 97 (107)
T ss_dssp HHHHHTCCBSSSCBCEEEECCCC
T ss_pred HHHhccCCeECCCEEEEEeCCCC
Confidence 9999 898998888988887654
No 23
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.4e-15 Score=129.98 Aligned_cols=82 Identities=18% Similarity=0.179 Sum_probs=69.7
Q ss_pred hccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHH
Q 009552 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (532)
Q Consensus 285 ~~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv 364 (532)
+...++|||+|||.++|+++|+++|+.||.|..|+|++++.++ ..+|||||+|++.++|++||
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~a~~Ai 76 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTG-----------------KSRGYGFVTMADRAAAERAC 76 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSC-----------------CCCSEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCC-----------------ccceEEEEEECCHHHHHHHH
Confidence 3467899999999999999999999999999999998754221 13789999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeee
Q 009552 365 AELNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 365 ~~Ln~~~~~~~glrV~l~~k 384 (532)
+.|++ .+.++.|+|.++..
T Consensus 77 ~~~~~-~~~g~~l~V~~a~~ 95 (116)
T 2cqd_A 77 KDPNP-IIDGRKANVNLAYL 95 (116)
T ss_dssp TCSSC-EETTEECEEEESTT
T ss_pred HhCCC-cCCCEEEEEEEccc
Confidence 99987 67777788877653
No 24
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=3.6e-15 Score=126.31 Aligned_cols=82 Identities=24% Similarity=0.312 Sum_probs=71.0
Q ss_pred hccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHH
Q 009552 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (532)
Q Consensus 285 ~~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv 364 (532)
....++|||+|||.++|+++|+++|+.||.|..|+|+.+. .++ .+|||||+|++.++|++|+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-----------~g~-------~~g~afV~f~~~~~a~~A~ 75 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-----------AGK-------PKGLAYVEYENESQASQAV 75 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-----------TSC-------EEEEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-----------CCC-------EEeEEEEEECCHHHHHHHH
Confidence 3467899999999999999999999999999999998653 111 3789999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeee
Q 009552 365 AELNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 365 ~~Ln~~~~~~~glrV~l~~k 384 (532)
+.||+..++++.|+|.+...
T Consensus 76 ~~l~g~~~~g~~l~v~~a~~ 95 (100)
T 2do4_A 76 MKMDGMTIKENIIKVAISNS 95 (100)
T ss_dssp HHHTTEESSSCEEEEEECCC
T ss_pred HHhCCCEECCEEEEEEECCC
Confidence 99999888888888877654
No 25
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=3.8e-15 Score=126.84 Aligned_cols=81 Identities=19% Similarity=0.185 Sum_probs=71.4
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
..++|||+|||.++|+++|+++|+.||.|..|+|+++..+ + ..+|||||+|++.++|++||+.
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~----------~-------~~~g~afV~f~~~~~A~~A~~~ 74 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHT----------K-------APRGFAFVRFHDRRDAQDAEAA 74 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSS----------C-------SBCSCEEEEESSSSHHHHHHHH
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCC----------C-------CCCeEEEEEECCHHHHHHHHHH
Confidence 5689999999999999999999999999999999765421 1 1378999999999999999999
Q ss_pred HcCCCCCCCceEEEEeee
Q 009552 367 LNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 367 Ln~~~~~~~glrV~l~~k 384 (532)
||+..++++.|+|.++..
T Consensus 75 l~g~~~~g~~l~V~~a~~ 92 (103)
T 2dnm_A 75 MDGAELDGRELRVQVARY 92 (103)
T ss_dssp HSSCCBTTBCCEEEECSS
T ss_pred cCCCEECCcEEEEEECCc
Confidence 999999999999888754
No 26
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.59 E-value=4.7e-15 Score=120.88 Aligned_cols=79 Identities=15% Similarity=0.144 Sum_probs=69.1
Q ss_pred eeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHHc
Q 009552 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (532)
Q Consensus 289 rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~Ln 368 (532)
.+|||+|||.++++++|+++|+.||.|..|+|.++..+ + ..+|||||+|++.++|++|++.||
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~----------~-------~~~g~afV~f~~~~~a~~a~~~l~ 64 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQT----------G-------SSRGYGFVSFTSQDDAQNAMDSMQ 64 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTT----------C-------CEEEEEEEEESCHHHHHHHHHHHT
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCC----------C-------CccceEEEEECCHHHHHHHHHHhc
Confidence 68999999999999999999999999999999875321 1 137899999999999999999999
Q ss_pred CCCCCCCceEEEEeee
Q 009552 369 DEGNWRSGLRVRLMLR 384 (532)
Q Consensus 369 ~~~~~~~glrV~l~~k 384 (532)
+..+.++.|+|.+...
T Consensus 65 g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 65 GQDLNGRPLRINWAAK 80 (83)
T ss_dssp TCEETTEECEEEECCC
T ss_pred CCeeCCcEEEEEecCc
Confidence 9998888888887654
No 27
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.59 E-value=7.7e-15 Score=127.38 Aligned_cols=84 Identities=17% Similarity=0.179 Sum_probs=72.7
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
...++|||+|||.++|+++|+++|+.||.|..|+|+++..+ + ..+|||||+|++.++|++||+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~----------~-------~~~g~afV~f~~~~~a~~A~~ 75 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMAT----------G-------KSKGYGFVSFFNKWDAENAIQ 75 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT----------C-------CEEEEEEEEESSHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCC----------C-------CcceEEEEEECCHHHHHHHHH
Confidence 46789999999999999999999999999999999875321 1 137899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeecC
Q 009552 366 ELNDEGNWRSGLRVRLMLRRG 386 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~k~~ 386 (532)
.|++..++++.|+|.++..+.
T Consensus 76 ~l~g~~~~g~~l~V~~a~~~~ 96 (115)
T 2dgo_A 76 QMGGQWLGGRQIRTNWATRKP 96 (115)
T ss_dssp HTTTCEETTEECEEEESSCCC
T ss_pred HhCCCEECCEEEEEEEccCCC
Confidence 999999888888888876543
No 28
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.59 E-value=1.4e-15 Score=126.94 Aligned_cols=80 Identities=16% Similarity=0.088 Sum_probs=66.5
Q ss_pred eeEEEecCCCcCcHHHHHHHhhhcC--CeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 289 RIVVAENLPEDHCHQNLMKIFSAVG--SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 289 rtVyV~nLP~d~t~edL~elFs~fG--~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
.+|||+|||.++|+++|+++|+.|| .|..|+|++++.++ .+||||||+|++.++|++|++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g-----------------~~kG~afV~f~~~~~a~~Ai~~ 64 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANG-----------------QSKGFALVGVGSEASSKKLMDL 64 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTC-----------------CEEEEEEECC-CHHHHHHHHHH
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCC-----------------ccCcEEEEEECCHHHHHHHHHH
Confidence 5899999999999999999999999 99999998764321 2388999999999999999999
Q ss_pred HcCCCCCCCceEEEEeeec
Q 009552 367 LNDEGNWRSGLRVRLMLRR 385 (532)
Q Consensus 367 Ln~~~~~~~glrV~l~~k~ 385 (532)
||+..++++.|+|.+....
T Consensus 65 l~g~~~~gr~i~V~~~~~~ 83 (90)
T 3p5t_L 65 LPKRELHGQNPVVTPSNKL 83 (90)
T ss_dssp GGGSCSSSCCCEECCC---
T ss_pred cCCCeeCCEEEEEEECCCC
Confidence 9999999998888876543
No 29
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.59 E-value=2.1e-15 Score=128.75 Aligned_cols=81 Identities=21% Similarity=0.225 Sum_probs=71.2
Q ss_pred cceeEEEecCCC------cCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHH
Q 009552 287 QSRIVVAENLPE------DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELA 360 (532)
Q Consensus 287 ~~rtVyV~nLP~------d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~A 360 (532)
..++|||+|||. ++++++|+++|++||.|..|+|.+++.+ + .+||||||+|++.++|
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~t----------g-------~~kG~afV~f~~~~~A 67 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEAT----------G-------KTKGFLFVECGSMNDA 67 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTT----------T-------EECSEEEEEESSHHHH
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCC----------C-------ccceEEEEEECCHHHH
Confidence 467999999999 9999999999999999999999776422 1 2378999999999999
Q ss_pred HHHHHHHcCCCCCC-CceEEEEeee
Q 009552 361 EKAIAELNDEGNWR-SGLRVRLMLR 384 (532)
Q Consensus 361 ekAv~~Ln~~~~~~-~glrV~l~~k 384 (532)
++||+.||+..+++ +.|+|.++..
T Consensus 68 ~~Ai~~lng~~~~g~r~l~V~~a~~ 92 (100)
T 3ns6_A 68 KKIIKSFHGKRLDLKHRLFLYTMKD 92 (100)
T ss_dssp HHHHHHHTTCBSSSSCBCEEEESHH
T ss_pred HHHHHHhCCcccCCCeEEEEEECch
Confidence 99999999999998 8899988753
No 30
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.59 E-value=5.1e-15 Score=126.36 Aligned_cols=76 Identities=20% Similarity=0.311 Sum_probs=67.9
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
..++|||+|||.++|+++|+++|+.||.|..|+|+ ++||||+|++.++|++||+.
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-------------------------~~~afV~f~~~~~a~~A~~~ 64 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-------------------------KDYAFIHFDERDGAVKAMEE 64 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-------------------------SSCEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-------------------------CCEEEEEeCCHHHHHHHHHH
Confidence 56899999999999999999999999999999984 45899999999999999999
Q ss_pred HcCCCCCCCceEEEEeeecCC
Q 009552 367 LNDEGNWRSGLRVRLMLRRGS 387 (532)
Q Consensus 367 Ln~~~~~~~glrV~l~~k~~~ 387 (532)
|++..++++.|+|.+...+..
T Consensus 65 l~g~~~~g~~l~v~~a~~~~~ 85 (103)
T 2dgu_A 65 MNGKDLEGENIEIVFAKPPDQ 85 (103)
T ss_dssp HTTEEETTEEEEEEECCCCCC
T ss_pred HCCCccCCCEEEEEEcCCCcc
Confidence 999988888888887765433
No 31
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.6e-15 Score=132.10 Aligned_cols=74 Identities=18% Similarity=0.204 Sum_probs=63.4
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
..++|||+|||+++|+++|+++|+.||.|++|+|+++ ||||||||++.++|++||+.
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----------------------kGfaFVeF~~~~~A~~Ai~~ 71 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----------------------KNQAFIEMNTEEAANTMVNY 71 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----------------------TTEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----------------------CCEEEEEECCHHHHHHHHHH
Confidence 5689999999999999999999999999999999642 68999999999999999999
Q ss_pred HcC--CCCCCCceEEEEee
Q 009552 367 LND--EGNWRSGLRVRLML 383 (532)
Q Consensus 367 Ln~--~~~~~~glrV~l~~ 383 (532)
|++ ..+.++.|+|.+..
T Consensus 72 l~~~~~~l~Gr~l~V~~A~ 90 (105)
T 1sjq_A 72 YTSVTPVLRGQPIYIQFSN 90 (105)
T ss_dssp HTTSCCEETTEECCBCCCS
T ss_pred hccCCceECCEEEEEEEcC
Confidence 874 34556666665553
No 32
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.6e-15 Score=127.51 Aligned_cols=82 Identities=26% Similarity=0.341 Sum_probs=70.8
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
..++|||+|||.++|+++|+++|+.||.|..|+|+++..+ + ..+|||||+|++.++|++||+.
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~----------~-------~~~g~afV~f~~~~~A~~A~~~ 73 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYET----------E-------KHRGFAFVEFELAEDAAAAIDN 73 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSS----------C-------CCSSEEEECCSSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCC----------C-------CcceEEEEEECCHHHHHHHHHH
Confidence 5689999999999999999999999999999999765321 1 1378999999999999999999
Q ss_pred HcCCCCCCCceEEEEeeec
Q 009552 367 LNDEGNWRSGLRVRLMLRR 385 (532)
Q Consensus 367 Ln~~~~~~~glrV~l~~k~ 385 (532)
||+..++++.|+|.+...+
T Consensus 74 l~g~~~~g~~l~V~~a~~~ 92 (102)
T 2cqb_A 74 MNESELFGRTIRVNLAKPM 92 (102)
T ss_dssp HTTEEETTEEEEEEECCCC
T ss_pred hCCCEECCcEEEEEeCCCC
Confidence 9998888888888876543
No 33
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=5.6e-15 Score=125.81 Aligned_cols=82 Identities=27% Similarity=0.304 Sum_probs=72.2
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
...++|||+|||.++|+++|+++|+.||.|..|+|+.+ + + ..++||||+|++.++|++||+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~----------g-------~~~g~afV~f~~~~~A~~A~~ 73 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--G----------G-------RSKGFGFVCFSSPEEATKAVT 73 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--S----------S-------SEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--C----------C-------CcCEEEEEEECCHHHHHHHHH
Confidence 46789999999999999999999999999999999754 1 1 137899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeecC
Q 009552 366 ELNDEGNWRSGLRVRLMLRRG 386 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~k~~ 386 (532)
.||+..++++.|+|.+...+.
T Consensus 74 ~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2d9p_A 74 EMNGRIVATKPLYVALAQRKE 94 (103)
T ss_dssp HHTTCBSSSSBCEEEECSSCC
T ss_pred HhCCCEeCCcEEEEEEecccc
Confidence 999999999999999876543
No 34
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.58 E-value=3.8e-15 Score=128.69 Aligned_cols=73 Identities=21% Similarity=0.174 Sum_probs=63.8
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
.+++|||+|||+++|+++|+++|+.||.|.+|+|++. ||||||||++.++|++||+.
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~-----------------------kg~AFVef~~~~~A~~Av~~ 76 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK-----------------------KRQALVEFEDVLGACNAVNY 76 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT-----------------------TTEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC-----------------------CCEEEEEECCHHHHHHHHHH
Confidence 5789999999999999999999999999999999631 67999999999999999999
Q ss_pred HcCCC--CCCCceEEEEe
Q 009552 367 LNDEG--NWRSGLRVRLM 382 (532)
Q Consensus 367 Ln~~~--~~~~glrV~l~ 382 (532)
|++.. +.++.|+|.+.
T Consensus 77 ln~~~~~i~Gr~i~V~~S 94 (100)
T 3r27_A 77 AADNQIYIAGHPAFVNYS 94 (100)
T ss_dssp HHHSCEEETTEEEEEEEC
T ss_pred hcCCCceeCCcEEEEEec
Confidence 99876 44566666654
No 35
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.58 E-value=9.6e-15 Score=124.59 Aligned_cols=82 Identities=21% Similarity=0.290 Sum_probs=71.1
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
..++|||+|||.++++++|+++|+.||.|..|+|+++.+ + ..+|||||+|++.++|++||+.
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----------g-------~~~g~afV~f~~~~~A~~Ai~~ 75 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPD-----------G-------SSKGCAFVKFSSHTEAQAAIHA 75 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSS-----------S-------CEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-----------C-------CcCcEEEEEeCCHHHHHHHHHH
Confidence 578999999999999999999999999999999986531 1 1378999999999999999999
Q ss_pred HcCCCCCC---CceEEEEeeecC
Q 009552 367 LNDEGNWR---SGLRVRLMLRRG 386 (532)
Q Consensus 367 Ln~~~~~~---~glrV~l~~k~~ 386 (532)
||+..+.+ +.|+|.++..+.
T Consensus 76 l~g~~~~gg~~~~l~V~~a~~~~ 98 (105)
T 2dnh_A 76 LHGSQTMPGASSSLVVKFADTDK 98 (105)
T ss_dssp HSSCCCCTTCSSCCEEEESCSSC
T ss_pred HcCCccCCCCCccEEEEECccCc
Confidence 99988877 788888776543
No 36
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.58 E-value=4e-15 Score=125.29 Aligned_cols=80 Identities=23% Similarity=0.336 Sum_probs=69.8
Q ss_pred ceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHH
Q 009552 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (532)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~L 367 (532)
+++|||+|||.++++++|+++|+.||.|..|+|.++..+ + .++|||||+|++.++|++|++.|
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~----------g-------~~~g~afV~f~~~~~A~~Ai~~l 64 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQT----------G-------RSKGYAFIEFRDLESSASAVRNL 64 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTT----------C-------CBCSEEEEEESSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCC----------C-------ccceEEEEEECCHHHHHHHHHHh
Confidence 579999999999999999999999999999999765321 1 13789999999999999999999
Q ss_pred cCCCCCCCceEEEEeee
Q 009552 368 NDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 368 n~~~~~~~glrV~l~~k 384 (532)
|+..+.++.|+|.+...
T Consensus 65 ~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 65 NGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp TTCEETTEECEEEECSC
T ss_pred CCCeECCeEEEEEEcCC
Confidence 99988888888887654
No 37
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.5e-15 Score=128.00 Aligned_cols=83 Identities=25% Similarity=0.282 Sum_probs=71.8
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
...++|||+|||.++|+++|+++|+.||.|..|+|++++.+ + ..+|||||+|++.++|++||+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~----------~-------~~~g~afV~f~~~~~A~~A~~ 75 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTT----------G-------QSKGFAFISFHRREDAARAIA 75 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSS----------C-------SEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCC----------C-------ceeeEEEEEECCHHHHHHHHH
Confidence 35789999999999999999999999999999999875421 1 137899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeec
Q 009552 366 ELNDEGNWRSGLRVRLMLRR 385 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~k~ 385 (532)
.||+..++++.|+|.+...+
T Consensus 76 ~l~g~~~~g~~l~v~~a~~~ 95 (103)
T 2cq0_A 76 GVSGFGYDHLILNVEWAKPS 95 (103)
T ss_dssp HTTTCEETTEECEEEESSCC
T ss_pred HcCCCeeCCcEEEEEECCCC
Confidence 99999988888888876543
No 38
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=4.6e-15 Score=128.09 Aligned_cols=80 Identities=19% Similarity=0.236 Sum_probs=70.0
Q ss_pred hccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHH
Q 009552 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (532)
Q Consensus 285 ~~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv 364 (532)
+...++|||+|||.++|+++|+++|+.||.|..|+|+++.. + .+||||||+|++.++|++||
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-----------g-------~~rG~aFV~F~~~e~a~~Ai 69 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-----------K-------AFKGSIFVVFDSIESAKKFV 69 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-----------T-------SCCCEEEEEESSHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-----------C-------CCccEEEEEECCHHHHHHHH
Confidence 34678999999999999999999999999999999987632 1 13889999999999999999
Q ss_pred HHHcCCCCCCCceEEEEee
Q 009552 365 AELNDEGNWRSGLRVRLML 383 (532)
Q Consensus 365 ~~Ln~~~~~~~glrV~l~~ 383 (532)
+ +++..+.++.|+|....
T Consensus 70 ~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 70 E-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp T-SSCCCCTTTTCEEEEHH
T ss_pred H-cCCCEECCEEEEEEEch
Confidence 9 89888888889888654
No 39
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=6.5e-15 Score=127.61 Aligned_cols=75 Identities=17% Similarity=0.159 Sum_probs=65.6
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
.+++|||+|||+++++++|+++|+.||.|..|+|+++ ||||||||++.++|++|++.
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-----------------------kg~aFVef~~~~~A~~Ai~~ 70 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-----------------------KRQALVEFENIDSAKECVTF 70 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-----------------------TTEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-----------------------CCEEEEEECCHHHHHHHHHH
Confidence 4689999999999999999999999999999998531 67999999999999999999
Q ss_pred HcCCC--CCCCceEEEEeee
Q 009552 367 LNDEG--NWRSGLRVRLMLR 384 (532)
Q Consensus 367 Ln~~~--~~~~glrV~l~~k 384 (532)
|++.. +.++.|+|.+...
T Consensus 71 l~~~~~~i~Gr~l~V~~a~~ 90 (104)
T 1wex_A 71 AADVPVYIAGQQAFFNYSTS 90 (104)
T ss_dssp HHHSCCBSSSSBCEEEECSS
T ss_pred hccCCceECCEEEEEEEccC
Confidence 97654 6777788887654
No 40
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=2.6e-15 Score=130.02 Aligned_cols=75 Identities=17% Similarity=0.232 Sum_probs=65.8
Q ss_pred cceeEEEecCCC-cCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 287 QSRIVVAENLPE-DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 287 ~~rtVyV~nLP~-d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
.+++|||+|||+ ++|+++|+++|+.||.|.+|+|+++ |+||||||++.++|++||+
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----------------------kg~aFVef~~~~~A~~Ai~ 70 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----------------------INEAFIEMATTEDAQAAVD 70 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----------------------SSCEEEEESSHHHHHHHHH
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----------------------CCEEEEEECCHHHHHHHHH
Confidence 568999999999 9999999999999999999999642 5699999999999999999
Q ss_pred HHcCCC--CCCCceEEEEeee
Q 009552 366 ELNDEG--NWRSGLRVRLMLR 384 (532)
Q Consensus 366 ~Ln~~~--~~~~glrV~l~~k 384 (532)
.|++.. +.++.|+|.+..+
T Consensus 71 ~l~~~~~~~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 71 YYTTTPALVFGKPVRVHLSQK 91 (102)
T ss_dssp HHHHSCCEETTEECEEEEECC
T ss_pred HHcCCCceECCcEEEEEECCC
Confidence 998654 6777788877653
No 41
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=5.8e-15 Score=127.03 Aligned_cols=82 Identities=23% Similarity=0.289 Sum_probs=69.9
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
...++|||+|||.++|+++|+++|+.||.|..|+|+++..+ + ..+|||||+|++.++|++||+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~----------g-------~~~g~afV~f~~~~~A~~A~~ 75 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDT----------E-------HSKGCAFAQFMTQEAAQKCLA 75 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSS----------C-------CBCSEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC----------C-------CCccEEEEEECCHHHHHHHHH
Confidence 35789999999999999999999999999999999876421 1 137899999999999999999
Q ss_pred HHc------CCCCCCCceEEEEeee
Q 009552 366 ELN------DEGNWRSGLRVRLMLR 384 (532)
Q Consensus 366 ~Ln------~~~~~~~glrV~l~~k 384 (532)
.|+ +..++++.|+|.+...
T Consensus 76 ~~~~~~~~~~~~~~g~~l~v~~a~~ 100 (111)
T 1x4h_A 76 AASLEAEGGGLKLDGRQLKVDLAVT 100 (111)
T ss_dssp HHCTTTTTCCEESSSCEEEEECCCC
T ss_pred HhccccccCCcEEcCEEEEEEECCC
Confidence 999 8788777777776644
No 42
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=5.4e-15 Score=131.55 Aligned_cols=77 Identities=17% Similarity=0.207 Sum_probs=67.6
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
.+++|||+|||+++|+++|+++|+.||.|+.|+|+++ ||||||||++.++|++||+.
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----------------------kG~AFVeF~~~e~A~~Ai~~ 86 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----------------------KNQAFIEMNTEEAANTMVNY 86 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----------------------GTEEEEECSCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----------------------CCEEEEEECCHHHHHHHHHH
Confidence 5689999999999999999999999999999999632 78999999999999999999
Q ss_pred HcC--CCCCCCceEEEEeeecC
Q 009552 367 LND--EGNWRSGLRVRLMLRRG 386 (532)
Q Consensus 367 Ln~--~~~~~~glrV~l~~k~~ 386 (532)
|++ ..+.++.|+|.+...+.
T Consensus 87 l~~~~~~l~Gr~l~V~~a~~k~ 108 (119)
T 2ad9_A 87 YTSVTPVLRGQPIYIQFSNHKE 108 (119)
T ss_dssp HHHHCCCBTTBCCEEEECSSSS
T ss_pred hccCCceECCeEEEEEEccCCC
Confidence 884 46778888888875443
No 43
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.58 E-value=2e-15 Score=128.75 Aligned_cols=78 Identities=19% Similarity=0.195 Sum_probs=64.4
Q ss_pred ceeEEEecCCCcCcHHHHHHHhhhcCC--eeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 288 SRIVVAENLPEDHCHQNLMKIFSAVGS--VKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~elFs~fG~--V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
-.||||+|||.++|+++|+++|++||. |..|+|++++.++ .+||||||+|++.++|++||+
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg-----------------~srG~aFV~f~~~~~A~~Ai~ 71 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQ-----------------QNRGFAFVQLSSAMDASQLLQ 71 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSS-----------------SCSSEEEEECSSSHHHHHHHH
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCC-----------------CCceEeEEEECCHHHHHHHHH
Confidence 459999999999999999999999995 6789987764321 238899999999999999999
Q ss_pred HHcCCC----CCCCceEEEEe
Q 009552 366 ELNDEG----NWRSGLRVRLM 382 (532)
Q Consensus 366 ~Ln~~~----~~~~glrV~l~ 382 (532)
.||+.. +.++.|+|.++
T Consensus 72 ~lng~~~~~~i~Gr~i~V~~A 92 (95)
T 2lkz_A 72 ILQSLHPPLKIDGKTIGVDFA 92 (95)
T ss_dssp HHHSSSSCEEETTEEEEEEEC
T ss_pred HhcCCCCCceECCEEEEEEEc
Confidence 999864 45666666654
No 44
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.58 E-value=3.2e-15 Score=122.41 Aligned_cols=79 Identities=27% Similarity=0.374 Sum_probs=68.5
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
..++|||+|||.++++++|+++|+.||.|..|+|.++..+ + ..+|||||+|++.++|++|++.
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~----------~-------~~~g~afV~f~~~~~a~~A~~~ 68 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYET----------E-------KHRGFAFVEFELAEDAAAAIDN 68 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTT----------T-------EECSEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCC----------C-------ccccEEEEEECCHHHHHHHHHH
Confidence 5689999999999999999999999999999998765321 1 1378999999999999999999
Q ss_pred HcCCCCCCCceEEEEe
Q 009552 367 LNDEGNWRSGLRVRLM 382 (532)
Q Consensus 367 Ln~~~~~~~glrV~l~ 382 (532)
||+..+.++.|+|.++
T Consensus 69 l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 69 MNESELFGRTIRVNLA 84 (85)
T ss_dssp HTTCEETTEECEEEEC
T ss_pred hCCCEECCcEEEEEEc
Confidence 9999988888887764
No 45
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=7.6e-15 Score=124.99 Aligned_cols=80 Identities=25% Similarity=0.311 Sum_probs=70.1
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
...++|||+|||.++++++|+++|+.||.|..|+|+++.. ..+|||||+|++.++|++||+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-------------------~~~g~afV~f~~~~~a~~A~~ 73 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT-------------------SNDPYCFVEFYEHRDAAAALA 73 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC-------------------SSCCEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC-------------------CCCCEEEEEECCHHHHHHHHH
Confidence 4678999999999999999999999999999999986521 127899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeee
Q 009552 366 ELNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~k 384 (532)
.|++..++++.|+|.+...
T Consensus 74 ~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2cqi_A 74 AMNGRKILGKEVKVNWATT 92 (103)
T ss_dssp HHTTEEETTEEEEEEECCC
T ss_pred HhCCCCcCCCeEEEEECCC
Confidence 9999988888788777654
No 46
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.58 E-value=6.5e-15 Score=126.86 Aligned_cols=83 Identities=22% Similarity=0.284 Sum_probs=72.2
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
...++|||+|||.++|+++|+++|+.||.|..|+|+.+..+ + ..+|||||+|++.++|++||+
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~----------~-------~~~g~afV~f~~~~~A~~Ai~ 86 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRT----------G-------FSKGYALVEYETHKQALAAKE 86 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTT----------S-------SBCSEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCC----------C-------CcceEEEEEECCHHHHHHHHH
Confidence 46789999999999999999999999999999999765321 1 137899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeec
Q 009552 366 ELNDEGNWRSGLRVRLMLRR 385 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~k~ 385 (532)
.|++..++++.|+|.+...+
T Consensus 87 ~l~g~~~~g~~l~V~~a~~~ 106 (110)
T 1oo0_B 87 ALNGAEIMGQTIQVDWCFVK 106 (110)
T ss_dssp HHTTCEETTEECEEEESEES
T ss_pred HcCCCEECCcEEEEEEcccC
Confidence 99999998888888887654
No 47
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.58 E-value=3.3e-15 Score=129.92 Aligned_cols=82 Identities=22% Similarity=0.327 Sum_probs=70.7
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
...++|||+|||.++|+++|+++|+.||.|..|+|+++..+ + .++|||||+|++.++|++||+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~----------g-------~~~g~afV~f~~~~~a~~A~~ 85 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQT----------N-------LSKCFGFVSYDNPVSAQAAIQ 85 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSS----------C-------SEEEEEEEECSSHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC----------C-------CcCccEEEEECCHHHHHHHHH
Confidence 35689999999999999999999999999999999876421 1 237899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeee
Q 009552 366 ELNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~k 384 (532)
.||+..++++.|+|.+...
T Consensus 86 ~l~g~~~~g~~l~V~~a~~ 104 (115)
T 2cpz_A 86 SMNGFQIGMKRLKVQLKRS 104 (115)
T ss_dssp HHTTCEETTEECEEECCCC
T ss_pred HcCCCEECCEEEEEEEcCC
Confidence 9999988888788776643
No 48
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.58 E-value=4.5e-15 Score=122.15 Aligned_cols=81 Identities=23% Similarity=0.309 Sum_probs=69.9
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
+.++|||+|||.++|+++|+++|+.||.|..|+|..+..+ + ...+|||||+|++.++|++|++.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~----------~------~~~~g~afV~f~~~~~a~~A~~~ 66 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMH----------P------HLSKGYAYVEFENPDEAEKALKH 66 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTE----------E------EEECSEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCC----------C------CCCCcEEEEEEecHHHHHHHHHH
Confidence 5689999999999999999999999999999999764321 0 11378999999999999999999
Q ss_pred HcCCCCCCCceEEEEee
Q 009552 367 LNDEGNWRSGLRVRLML 383 (532)
Q Consensus 367 Ln~~~~~~~glrV~l~~ 383 (532)
||+..++++.|+|.++.
T Consensus 67 l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 67 MDGGQIDGQEITATAVL 83 (88)
T ss_dssp HTTCEETTEECEEEEEC
T ss_pred cCCCeECCeEEEEEECC
Confidence 99999988888888774
No 49
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.58 E-value=2.9e-14 Score=138.40 Aligned_cols=74 Identities=26% Similarity=0.330 Sum_probs=66.5
Q ss_pred ceeEEEecCCCcCcHHHHHHHhhhcC-CeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 288 SRIVVAENLPEDHCHQNLMKIFSAVG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~elFs~fG-~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
.++|||+|||.++++++|+++|+.|| .|..|+|+.. .+|||||+|++.++|++|++.
T Consensus 151 ~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~----------------------~~g~afV~f~~~~~A~~Ai~~ 208 (229)
T 2adc_A 151 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----------------------DRKMALIQMGSVEEAVQALID 208 (229)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS----------------------STTCEEEEESSHHHHHHHHHH
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC----------------------CCcEEEEEECCHHHHHHHHHH
Confidence 68999999999999999999999999 9999999531 167999999999999999999
Q ss_pred HcCCCCC-CCceEEEEee
Q 009552 367 LNDEGNW-RSGLRVRLML 383 (532)
Q Consensus 367 Ln~~~~~-~~glrV~l~~ 383 (532)
||+..+. ++.|+|.+..
T Consensus 209 l~g~~~~~g~~l~v~~a~ 226 (229)
T 2adc_A 209 LHNHDLGENHHLRVSFSK 226 (229)
T ss_dssp HTTCBSSSSCBCEEEECS
T ss_pred HCCCccCCCCeEEEEEec
Confidence 9999888 7888888764
No 50
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=3.1e-15 Score=129.90 Aligned_cols=84 Identities=26% Similarity=0.281 Sum_probs=71.7
Q ss_pred hhhccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHH
Q 009552 283 LEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (532)
Q Consensus 283 ~~~~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~Aek 362 (532)
.++...++|||+|||.++++++|+++|+.||.|..|+|+++..+ + ..+|||||+|++.++|++
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~----------g-------~~~g~afV~f~~~~~a~~ 82 (114)
T 2cq4_A 20 PEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNS----------R-------RSKGIAYVEFCEIQSVPL 82 (114)
T ss_dssp TTHHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCS----------S-------SCCCCEEEEESCGGGHHH
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCC----------C-------ccCcEEEEEeCcHHHHHH
Confidence 34557799999999999999999999999999999999865421 1 137899999999999999
Q ss_pred HHHHHcCCCCCCCceEEEEeee
Q 009552 363 AIAELNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 363 Av~~Ln~~~~~~~glrV~l~~k 384 (532)
|| .||+..++++.|+|.+...
T Consensus 83 A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 83 AI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HH-HHTTEEETTEEEEEEEHHH
T ss_pred HH-HcCCCEeCCeEEEEEecCC
Confidence 99 8999988888888877643
No 51
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=7.3e-15 Score=126.51 Aligned_cols=79 Identities=23% Similarity=0.238 Sum_probs=68.6
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
...++|||+|||.++|+++|+++|+.||.|..|+|..++ ..++||||+|++.++|++||+
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~--------------------~~~g~afV~f~~~~~A~~A~~ 79 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRR--------------------GGPPFAFVEFEDPRDAEDAVY 79 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSS--------------------SSSCCEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC--------------------CCCcEEEEEECCHHHHHHHHH
Confidence 356899999999999999999999999999999995421 137899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeee
Q 009552 366 ELNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~k 384 (532)
.||+..++++.|+|.+...
T Consensus 80 ~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 80 GRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp HHTTCEETTEECEEECCCC
T ss_pred HcCCCEECCeEEEEEEccc
Confidence 9999988888787776643
No 52
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.3e-14 Score=123.56 Aligned_cols=82 Identities=17% Similarity=0.224 Sum_probs=71.8
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
...++|||+|||.++|+++|+++|+.||.|..|+|+++.. ..++||||+|++.++|++||+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~-------------------~~~g~afV~f~~~~~a~~A~~ 73 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-------------------GSKGFGFVTFENSADADRARE 73 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT-------------------TTCCEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-------------------CCcEEEEEEECCHHHHHHHHH
Confidence 4678999999999999999999999999999999986521 137899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeecC
Q 009552 366 ELNDEGNWRSGLRVRLMLRRG 386 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~k~~ 386 (532)
.|++..++++.|+|.+...+.
T Consensus 74 ~l~g~~~~g~~l~v~~a~~~~ 94 (103)
T 2cq3_A 74 KLHGTVVEGRKIEVNNATARV 94 (103)
T ss_dssp HHTTCEETTEECEEEECCSSC
T ss_pred HhCCCEECCEEEEEEEcccCC
Confidence 999999888888888776543
No 53
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.57 E-value=9e-15 Score=123.81 Aligned_cols=79 Identities=18% Similarity=0.242 Sum_probs=69.8
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeE--------EEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKT--------IRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVE 358 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~--------Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E 358 (532)
..++|||+|||.++|+++|+++|++||.|.. |+|.+++.+ + ..+|||||+|++.+
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~----------g-------~~~G~afV~f~~~~ 74 (99)
T 2la6_A 12 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRET----------G-------KLKGEATVSFDDPP 74 (99)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTT----------C-------SEEEEEEEEBSSHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCC----------C-------CeeeEEEEEECCHH
Confidence 5689999999999999999999999999999 999876421 1 13789999999999
Q ss_pred HHHHHHHHHcCCCCCCCceEEEEe
Q 009552 359 LAEKAIAELNDEGNWRSGLRVRLM 382 (532)
Q Consensus 359 ~AekAv~~Ln~~~~~~~glrV~l~ 382 (532)
+|++|++.||+..+.++.|+|.++
T Consensus 75 ~a~~Ai~~l~g~~~~g~~l~V~~A 98 (99)
T 2la6_A 75 SAKAAIDWFDGKEFSGNPIKVSFA 98 (99)
T ss_dssp HHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred HHHHHHHHhCCCEeCCcEEEEEec
Confidence 999999999999999988888864
No 54
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=4.8e-15 Score=123.81 Aligned_cols=79 Identities=19% Similarity=0.295 Sum_probs=68.6
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
..++|||+|||.++++++|+++|+.||.|..|+|+.+..+ + .++|||||+|++.++|++|++.
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~----------~-------~~~g~afV~f~~~~~A~~A~~~ 77 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDT----------R-------KSKGVAFILFLDKDSAQNCTRA 77 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSS----------C-------CCTTCEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCC----------C-------CcccEEEEEECCHHHHHHHHHH
Confidence 5689999999999999999999999999999999765421 1 1378999999999999999999
Q ss_pred HcCCCCCCCceEEEEe
Q 009552 367 LNDEGNWRSGLRVRLM 382 (532)
Q Consensus 367 Ln~~~~~~~glrV~l~ 382 (532)
||+..++++.|+|.++
T Consensus 78 l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 78 INNKQLFGRVIKASIA 93 (94)
T ss_dssp TTTEEETTEEEEEEEC
T ss_pred cCCCeeCCcEEEEEec
Confidence 9998888877777764
No 55
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=8.7e-15 Score=126.28 Aligned_cols=76 Identities=21% Similarity=0.188 Sum_probs=66.7
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
..++|||+|||+++|+++|+++|++||.|..|+|+.+ |||||+|++.++|++||+.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------------------------g~afV~f~~~~~a~~Ai~~ 69 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------------------------GTGVVEFVRKEDMTYAVRK 69 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------------------------TEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------------------------CEEEEEECCHHHHHHHHHH
Confidence 4679999999999999999999999999999999631 5999999999999999999
Q ss_pred HcCCCCCC-----CceEEEEeeecC
Q 009552 367 LNDEGNWR-----SGLRVRLMLRRG 386 (532)
Q Consensus 367 Ln~~~~~~-----~glrV~l~~k~~ 386 (532)
||+..+.+ +.|+|.++..+.
T Consensus 70 l~g~~~~g~~~~~~~i~V~~a~~~~ 94 (108)
T 1x4c_A 70 LDNTKFRSHEGETAYIRVKVDGPRS 94 (108)
T ss_dssp SSSEEEECTTSCEEEEEEEESSCCS
T ss_pred HCcCCccCCcCcceEEEEEeCCCCC
Confidence 99988877 667777765543
No 56
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.57 E-value=4.7e-15 Score=122.47 Aligned_cols=80 Identities=19% Similarity=0.227 Sum_probs=68.7
Q ss_pred hccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHH
Q 009552 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (532)
Q Consensus 285 ~~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv 364 (532)
+...++|||+|||.++|+++|+++|+.||.|..|+|.++..+ + ..+|||||+|++.++|++|+
T Consensus 3 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~----------~-------~~~g~afV~f~~~~~a~~a~ 65 (89)
T 3ucg_A 3 EADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFS----------G-------HPKGFAYIEFSDKESVRTSL 65 (89)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSS----------S-------SCCEEEEEEESSTHHHHHHG
T ss_pred CCcCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCC----------C-------CcceEEEEEECCHHHHHHHH
Confidence 346789999999999999999999999999999999875421 1 13789999999999999999
Q ss_pred HHHcCCCCCCCceEEEEe
Q 009552 365 AELNDEGNWRSGLRVRLM 382 (532)
Q Consensus 365 ~~Ln~~~~~~~glrV~l~ 382 (532)
.|++..+.++.|+|.+.
T Consensus 66 -~~~g~~~~g~~l~V~~a 82 (89)
T 3ucg_A 66 -ALDESLFRGRQIKVIPK 82 (89)
T ss_dssp -GGTTCEETTEECEEEET
T ss_pred -hcCCCEECCcEEEEEEc
Confidence 89999888877777755
No 57
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.9e-14 Score=119.73 Aligned_cols=74 Identities=23% Similarity=0.246 Sum_probs=67.7
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
..++|||+|||.++|+++|+++|+.||.|..|+|. |+||||+|++.++|++|++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------------------------~g~afV~f~~~~~A~~A~~~ 61 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------------------------KNYGFVHIEDKTAAEDAIRN 61 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------------------------TTEEEEEESSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------------------------CCEEEEEECCHHHHHHHHHH
Confidence 56899999999999999999999999999999984 56999999999999999999
Q ss_pred HcCCCCCCCceEEEEeeec
Q 009552 367 LNDEGNWRSGLRVRLMLRR 385 (532)
Q Consensus 367 Ln~~~~~~~glrV~l~~k~ 385 (532)
|++..++++.|+|.+...+
T Consensus 62 l~g~~~~g~~l~v~~a~~~ 80 (90)
T 2dnq_A 62 LHHYKLHGVNINVEASKNK 80 (90)
T ss_dssp HTTCBCSSCBCEEECSSCC
T ss_pred hcCCccCCcEEEEEECCCC
Confidence 9999998888888876543
No 58
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.56 E-value=7.2e-15 Score=131.64 Aligned_cols=81 Identities=21% Similarity=0.222 Sum_probs=70.8
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
..++|||+|||.++|+++|+++|+.||.|..|+|++++.++ ..+|||||+|++.++|++||+.
T Consensus 45 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg-----------------~~~G~afV~F~~~~~A~~Ai~~ 107 (129)
T 2kxn_B 45 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSR-----------------RSRGFAFVYFENVDDAKEAKER 107 (129)
T ss_dssp CSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSS-----------------CCCCEEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCC-----------------ccceEEEEEECCHHHHHHHHHH
Confidence 56899999999999999999999999999999998764321 1378999999999999999999
Q ss_pred HcCCCCCCCceEEEEeee
Q 009552 367 LNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 367 Ln~~~~~~~glrV~l~~k 384 (532)
||+..++++.|+|.+...
T Consensus 108 lng~~i~g~~l~V~~a~~ 125 (129)
T 2kxn_B 108 ANGMELDGRRIRVDFSIT 125 (129)
T ss_dssp HTTCCSSSSCCEESCCSS
T ss_pred hCCCEECCEEEEEEEecC
Confidence 999999888888876643
No 59
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=5.9e-15 Score=123.32 Aligned_cols=79 Identities=22% Similarity=0.188 Sum_probs=68.2
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
..++|||+|||.++++++|+++|+.||.|..|+|+++..+ + ..+|||||+|++.++|++|++.
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~----------~-------~~~g~afV~f~~~~~A~~A~~~ 76 (95)
T 2cqc_A 14 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQS----------R-------RSRGFAFVYFENVDDAKEAKER 76 (95)
T ss_dssp GGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSS----------S-------SEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCC----------C-------CcccEEEEEECCHHHHHHHHHH
Confidence 5689999999999999999999999999999999865421 1 1378999999999999999999
Q ss_pred HcCCCCCCCceEEEEe
Q 009552 367 LNDEGNWRSGLRVRLM 382 (532)
Q Consensus 367 Ln~~~~~~~glrV~l~ 382 (532)
||+..++++.|+|.+.
T Consensus 77 l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 77 ANGMELDGRRIRVSGP 92 (95)
T ss_dssp HTTEEETTEEEEEECC
T ss_pred hCCCEECCEEEEEEec
Confidence 9998888777777654
No 60
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.56 E-value=6.5e-15 Score=123.27 Aligned_cols=79 Identities=23% Similarity=0.259 Sum_probs=68.9
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
...++|||+|||.++++++|+++|+.||.|..|+|.++.. + ..+|||||+|++.++|++|++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-----------g-------~~~g~afV~f~~~~~a~~A~~ 75 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-----------G-------KPKSFGFVCFKHPESVSYAIA 75 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-----------S-------CEEEEEEEEESSTHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-----------C-------CCceEEEEEECCHHHHHHHHH
Confidence 3568999999999999999999999999999999986531 1 137899999999999999999
Q ss_pred HHcCCCCCCCceEEEEe
Q 009552 366 ELNDEGNWRSGLRVRLM 382 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l~ 382 (532)
.||+..++++.|+|.+.
T Consensus 76 ~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 76 LLNGIRLYGRPINVSGP 92 (95)
T ss_dssp HHTTCEETTEECEEECC
T ss_pred HhCCCEECCCEEEEEEc
Confidence 99999888877777654
No 61
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.56 E-value=2.8e-14 Score=152.52 Aligned_cols=84 Identities=19% Similarity=0.198 Sum_probs=72.6
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
...++|||+|||.++|+++|+++|+.||.|+.|.|+.+..++ ..+|||||+|++.++|++||+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg-----------------~~kG~aFV~F~~~e~A~~Ai~ 162 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSG-----------------KPRGYAFIEYEHERDMHSAYK 162 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCC-----------------CccceEEEeeccHHHHHHHHH
Confidence 356799999999999999999999999999999998764221 137899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeecC
Q 009552 366 ELNDEGNWRSGLRVRLMLRRG 386 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~k~~ 386 (532)
.||+..+++..|+|.++..+.
T Consensus 163 ~lng~~i~gr~i~V~~a~~~~ 183 (437)
T 3pgw_S 163 HADGKKIDGRRVLVDVERGRT 183 (437)
T ss_pred HcCCCEECCEEEEEEEeCCCC
Confidence 999999988888888876543
No 62
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=6e-15 Score=127.66 Aligned_cols=83 Identities=23% Similarity=0.293 Sum_probs=70.6
Q ss_pred hccceeEEEecCCCcCcHHHHHHHhhhcCCee--------EEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCC
Q 009552 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVK--------TIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES 356 (532)
Q Consensus 285 ~~~~rtVyV~nLP~d~t~edL~elFs~fG~V~--------~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet 356 (532)
+...++|||+|||.++|+++|+++|+.||.|. .|+|+.++.+ + ..+|||||+|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~----------g-------~~~g~afV~f~~ 74 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKET----------G-------KPKGDATVSYED 74 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTT----------C-------SBCSEEEEEBSS
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCC----------C-------CeeeEEEEEECC
Confidence 44678999999999999999999999999999 5888765321 1 137899999999
Q ss_pred HHHHHHHHHHHcCCCCCCCceEEEEeee
Q 009552 357 VELAEKAIAELNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 357 ~E~AekAv~~Ln~~~~~~~glrV~l~~k 384 (532)
.++|++||+.||+..++++.|+|.+...
T Consensus 75 ~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (113)
T 2cpe_A 75 PPTAKAAVEWFDGKDFQGSKLKVSLARK 102 (113)
T ss_dssp HHHHHHHHHHHTTCEETTEECEEECSSC
T ss_pred HHHHHHHHHHcCCCccCCCEEEEEECCC
Confidence 9999999999999988888788776654
No 63
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=9.6e-15 Score=124.72 Aligned_cols=81 Identities=19% Similarity=0.271 Sum_probs=69.1
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
..++|||+|||.++|+++|+++|+.|| |..|+|+++..+. + ..+|||||+|++.++|++|| .
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~---------g-------~~~g~afV~f~~~~~a~~A~-~ 75 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNP---------E-------RLKGFGYAEFEDLDSLLSAL-S 75 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCT---------T-------SBCSCEEEEESSHHHHHHHH-G
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCC---------C-------CcCeEEEEEECCHHHHHHHH-h
Confidence 568999999999999999999999999 9999997654210 1 13789999999999999999 8
Q ss_pred HcCCCCCCCceEEEEeeec
Q 009552 367 LNDEGNWRSGLRVRLMLRR 385 (532)
Q Consensus 367 Ln~~~~~~~glrV~l~~k~ 385 (532)
|++..+.++.|+|.+...+
T Consensus 76 l~g~~~~g~~l~V~~a~~~ 94 (104)
T 1wi8_A 76 LNEESLGNKRIRVDVADQA 94 (104)
T ss_dssp GGTCEETTEECEEEECCCC
T ss_pred cCCCEeCCcEEEEEEccCC
Confidence 9999888888888877543
No 64
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=8.8e-15 Score=126.21 Aligned_cols=75 Identities=17% Similarity=0.184 Sum_probs=64.6
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
.+++|||+|||+++|+++|+++|+.||.|..|+|+++ ||||||||++.++|++|++.
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----------------------kg~aFVef~~~~~A~~Ai~~ 70 (101)
T 2cq1_A 14 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----------------------KNQAFLELATEEAAITMVNY 70 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----------------------TTEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----------------------CCEEEEEECCHHHHHHHHHH
Confidence 5689999999999999999999999999999998632 67999999999999999998
Q ss_pred HcC--CCCCCCceEEEEeee
Q 009552 367 LND--EGNWRSGLRVRLMLR 384 (532)
Q Consensus 367 Ln~--~~~~~~glrV~l~~k 384 (532)
|+. ..+.++.|+|.+...
T Consensus 71 l~~~~~~~~Gr~l~V~~a~~ 90 (101)
T 2cq1_A 71 YSAVTPHLRNQPIYIQYSNH 90 (101)
T ss_dssp HHHSCCEETTEECEEEECSC
T ss_pred hccCCceECCcEEEEEEcCc
Confidence 864 346677777777654
No 65
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.55 E-value=1.1e-14 Score=126.23 Aligned_cols=82 Identities=18% Similarity=0.221 Sum_probs=71.6
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
...++|||+|||.++|+++|+++|+.||.|..|+|+++..+ + ..+|||||+|++.++|++|++
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~----------g-------~~~g~afV~F~~~~~A~~Ai~ 86 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSET----------G-------RSKGYGFITFSDSECAKKALE 86 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTT----------T-------EEEEEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCC----------C-------ccceEEEEEECCHHHHHHHHH
Confidence 35789999999999999999999999999999999865321 1 137899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeee
Q 009552 366 ELNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~k 384 (532)
.||+..+.++.|+|.+...
T Consensus 87 ~l~g~~i~g~~l~V~~a~~ 105 (108)
T 2jrs_A 87 QLNGFELAGRPMKVGHVTE 105 (108)
T ss_dssp HHTTCCSSSSCCEEECSCS
T ss_pred HcCCCEECCEEEEEEEccc
Confidence 9999999999998887643
No 66
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.4e-14 Score=125.35 Aligned_cols=80 Identities=20% Similarity=0.183 Sum_probs=70.4
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
..++|||+|||.++|+++|+++|+.||.|..|+|+++.+ + ..+|||||+|++.++|++||+.
T Consensus 14 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~-----------g-------~~~g~afV~f~~~~~a~~A~~~ 75 (114)
T 2do0_A 14 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-----------G-------KSRGIGTVTFEQSIEAVQAISM 75 (114)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT-----------C-------SEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-----------C-------CeeeEEEEEECCHHHHHHHHHH
Confidence 568999999999999999999999999999999986531 1 1378999999999999999999
Q ss_pred HcCCCCCCCceEEEEeee
Q 009552 367 LNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 367 Ln~~~~~~~glrV~l~~k 384 (532)
||+..++++.|+|.+...
T Consensus 76 l~g~~~~g~~l~v~~a~~ 93 (114)
T 2do0_A 76 FNGQLLFDRPMHVKMDER 93 (114)
T ss_dssp HTTCEETTEECEEEECSC
T ss_pred hCCCEeCCCEEEEEEccc
Confidence 999998888888887654
No 67
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=5.3e-15 Score=125.84 Aligned_cols=82 Identities=29% Similarity=0.343 Sum_probs=71.7
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
...++|||+|||.++++++|+++|+.||.|..|+|+++..+ + .++|||||+|++.++|++|++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~----------g-------~~~g~afV~f~~~~~a~~A~~ 68 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRET----------G-------KPKGYGFCEYQDQETALSAMR 68 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTT----------T-------EEEEEEEEECSCHHHHHHHHH
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCC----------C-------ccceEEEEEECCHHHHHHHHH
Confidence 35689999999999999999999999999999999865321 1 137899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeee
Q 009552 366 ELNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~k 384 (532)
.||+..++++.|+|.+...
T Consensus 69 ~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 69 NLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp HSSSBSCSSSCBEEEETTC
T ss_pred HhCCCeeCCcEEEEEeCCC
Confidence 9999999999898887654
No 68
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.55 E-value=4.9e-15 Score=129.19 Aligned_cols=81 Identities=20% Similarity=0.304 Sum_probs=69.8
Q ss_pred hccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHH
Q 009552 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (532)
Q Consensus 285 ~~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv 364 (532)
....++|||+|||.++++++|+++|++||.|..|+|++++.+ + ..+|||||+|++.++|++||
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~----------g-------~~~g~afV~f~~~~~A~~A~ 99 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQT----------S-------LSKCFGFVSFDNPDSAQVAI 99 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSS----------S-------CCCCEEEEEEESSHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCC----------C-------CcCcEEEEEECCHHHHHHHH
Confidence 346789999999999999999999999999999999865422 1 13789999999999999999
Q ss_pred HHHcCCCCCCCceEEEEe
Q 009552 365 AELNDEGNWRSGLRVRLM 382 (532)
Q Consensus 365 ~~Ln~~~~~~~glrV~l~ 382 (532)
+.||+..++++.|+|.+.
T Consensus 100 ~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 100 KAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp HHCCCCEETTEECCEEEC
T ss_pred HHcCCCEECCEEEEEEec
Confidence 999998888887877754
No 69
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=6e-15 Score=124.33 Aligned_cols=84 Identities=26% Similarity=0.317 Sum_probs=70.1
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
..++|||+|||.++|+++|+++|+.||.|..|+|.++.... + ....+|||||+|++.++|++||+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~---------g-----t~~~~g~afV~f~~~~~a~~A~~~ 69 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKA---------G-----VLLSMGFGFVEYKKPEQAQKALKQ 69 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTT---------C-----CEEEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCC---------C-----CcCcccEEEEEECCHHHHHHHHHH
Confidence 56899999999999999999999999999999998653200 0 002378999999999999999999
Q ss_pred HcCCCCCCCceEEEEeee
Q 009552 367 LNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 367 Ln~~~~~~~glrV~l~~k 384 (532)
||+..+.++.|+|.+...
T Consensus 70 l~g~~~~g~~l~V~~a~~ 87 (98)
T 2cpf_A 70 LQGHTVDGHKLEVRISER 87 (98)
T ss_dssp STTCEETTEECEEECSSC
T ss_pred hCCCeeCCeEEEEEEccC
Confidence 999988888787776654
No 70
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=6.8e-15 Score=124.21 Aligned_cols=79 Identities=14% Similarity=0.204 Sum_probs=68.7
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCee-EEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVK-TIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~-~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
..++|||+|||.++++++|+++|+.||.|. .|+|++++.++ .++|||||+|++.++|++|++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g-----------------~~~g~afV~f~~~~~a~~A~~ 70 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTG-----------------IPAGYCFVEFADLATAEKCLH 70 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSC-----------------CEEEEEEEECSCHHHHHHHHH
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCC-----------------CcCCEEEEEeCCHHHHHHHHH
Confidence 568999999999999999999999999999 99998764321 137899999999999999999
Q ss_pred HHcCCCCCCCc----eEEEEe
Q 009552 366 ELNDEGNWRSG----LRVRLM 382 (532)
Q Consensus 366 ~Ln~~~~~~~g----lrV~l~ 382 (532)
.||+..+.++. |+|.++
T Consensus 71 ~l~g~~~~g~~~~~~l~v~~a 91 (99)
T 2div_A 71 KINGKPLPGATPAKRFKLNYA 91 (99)
T ss_dssp TTTTSEESSCSSCEECCEEET
T ss_pred HHcCCccCCCCcceeEEEeec
Confidence 99998888887 666654
No 71
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.55 E-value=1.2e-14 Score=124.42 Aligned_cols=78 Identities=18% Similarity=0.186 Sum_probs=69.5
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
..++|||+|||.++|+++|+++|+.||.|..|+|+++. + + ..+|||||+|++.++|++||+.
T Consensus 28 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~----------g-------~~~g~afV~f~~~~~a~~A~~~ 89 (107)
T 3ulh_A 28 TGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-S----------G-------RSLGTADVHFERKADALKAMKQ 89 (107)
T ss_dssp CSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-T----------S-------CEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-C----------C-------CcceEEEEEECCHHHHHHHHHH
Confidence 56899999999999999999999999999999998653 1 1 1378999999999999999999
Q ss_pred HcCCCCCCCceEEEEe
Q 009552 367 LNDEGNWRSGLRVRLM 382 (532)
Q Consensus 367 Ln~~~~~~~glrV~l~ 382 (532)
|++..+.++.|+|.++
T Consensus 90 l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 90 YNGVPLDGRPMNIQLV 105 (107)
T ss_dssp HTTCEETTEECEEEEE
T ss_pred hCCCEeCCcEEEEEEe
Confidence 9999998888888875
No 72
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.2e-14 Score=120.90 Aligned_cols=75 Identities=25% Similarity=0.233 Sum_probs=67.9
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
...++|||+|||.++|+++|+++|+.||.|..|+|+ ++||||+|++.++|++|++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-------------------------~~~afV~f~~~~~a~~A~~ 61 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-------------------------KDYAFVHMEKEADAKAAIA 61 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-------------------------SSCEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-------------------------CCEEEEEECCHHHHHHHHH
Confidence 357899999999999999999999999999999984 3489999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeec
Q 009552 366 ELNDEGNWRSGLRVRLMLRR 385 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~k~ 385 (532)
.||+..++++.|+|.+....
T Consensus 62 ~l~g~~~~g~~l~v~~a~~~ 81 (90)
T 2dnp_A 62 QLNGKEVKGKRINVELSTKG 81 (90)
T ss_dssp HHTTCEETTEECEEEESCCC
T ss_pred HhCCCEECCcEEEEEECCCC
Confidence 99999988888888887544
No 73
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.55 E-value=7e-15 Score=124.17 Aligned_cols=73 Identities=21% Similarity=0.147 Sum_probs=67.5
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
.+..|||+||++.+|+++|+++|++||+|++++|.. +||||||||.+.++|++|++.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----------------------~kGfaFVey~~~~eA~~Ai~~ 62 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----------------------NQGIALCKYTTREEANKAQMA 62 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----------------------TTTEEEEEESSHHHHHHHHHH
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----------------------CCcEEEEEECCHHHHHHHHHH
Confidence 356899999999999999999999999999999853 288999999999999999999
Q ss_pred HcCCCCCCCceEEEEe
Q 009552 367 LNDEGNWRSGLRVRLM 382 (532)
Q Consensus 367 Ln~~~~~~~glrV~l~ 382 (532)
||+..+.++.|+|+++
T Consensus 63 Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 63 LNNCVLANTTIFAESP 78 (89)
T ss_dssp HTTEEETTEEEEEECC
T ss_pred hcCCEECCcEEEEEEC
Confidence 9999999999999876
No 74
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=1.8e-14 Score=125.42 Aligned_cols=77 Identities=21% Similarity=0.197 Sum_probs=69.3
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
...++|||+|||.++|+++|+++|+.||.|..|+|.. .++||||+|++.++|++||+
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-----------------------~~g~afV~f~~~~~A~~Ai~ 64 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-----------------------GGITAIVEFLEPLEARKAFR 64 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-----------------------SSSCEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----------------------CCCEEEEEeCCHHHHHHHHH
Confidence 3568999999999999999999999999999998842 26799999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeec
Q 009552 366 ELNDEGNWRSGLRVRLMLRR 385 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~k~ 385 (532)
.||+..+.++.|+|.++...
T Consensus 65 ~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 65 HLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp HHTTCBSSSSBCEEEEEETT
T ss_pred HhCCCEECCeEEEEEECCCC
Confidence 99999999999999987653
No 75
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=8.6e-15 Score=128.92 Aligned_cols=76 Identities=21% Similarity=0.215 Sum_probs=66.6
Q ss_pred cceeEEEecCCCc-CcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 287 QSRIVVAENLPED-HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 287 ~~rtVyV~nLP~d-~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
.+++|||+|||++ +|+++|+++|+.||.|..|+|.+ .||||||||++.++|++||+
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~-----------------------~kg~aFVef~~~~~A~~Ai~ 80 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR-----------------------MKSQAFIEMETREDAMAMVD 80 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET-----------------------TTTEEEEECSSHHHHHHHHH
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec-----------------------CCCEEEEEECCHHHHHHHHH
Confidence 5789999999998 99999999999999999999953 16899999999999999999
Q ss_pred HHcCC--CCCCCceEEEEeeec
Q 009552 366 ELNDE--GNWRSGLRVRLMLRR 385 (532)
Q Consensus 366 ~Ln~~--~~~~~glrV~l~~k~ 385 (532)
.|++. .+.++.|+|.+..++
T Consensus 81 ~l~~~~~~l~Gr~l~V~~a~~~ 102 (112)
T 1x4f_A 81 HCLKKALWFQGRCVKVDLSEKY 102 (112)
T ss_dssp HHHHSCCCSSSSCCEEEEECSC
T ss_pred HhccCCceECCEEEEEEECccc
Confidence 98753 477888988887543
No 76
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=2.1e-14 Score=121.05 Aligned_cols=75 Identities=23% Similarity=0.278 Sum_probs=67.0
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
..++|||+|||.++|+++|+++|++||.|..|+|..+ ++||||+|++.++|++|++.
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-----------------------~g~afV~f~~~~~A~~A~~~ 72 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-----------------------DSFAYIQYESLDAAQAACAK 72 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-----------------------SCCEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-----------------------CCEEEEEECCHHHHHHHHHH
Confidence 5689999999999999999999999999999998521 67999999999999999999
Q ss_pred HcCCCCC--CCceEEEEeee
Q 009552 367 LNDEGNW--RSGLRVRLMLR 384 (532)
Q Consensus 367 Ln~~~~~--~~glrV~l~~k 384 (532)
||+..+. ++.|+|.+...
T Consensus 73 l~g~~~~~~g~~l~V~~a~~ 92 (97)
T 1why_A 73 MRGFPLGGPDRRLRVDFAKS 92 (97)
T ss_dssp HTTCBCSSSSCBCEEEECCC
T ss_pred HCCCEeCCCCcEEEEEECCC
Confidence 9999888 77788887653
No 77
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.55 E-value=2.1e-14 Score=121.22 Aligned_cols=75 Identities=20% Similarity=0.321 Sum_probs=68.4
Q ss_pred ccceeEEEecCCC-cCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHH
Q 009552 286 LQSRIVVAENLPE-DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (532)
Q Consensus 286 ~~~rtVyV~nLP~-d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv 364 (532)
...++|||+|||. ++|+++|+++|+.||.|..|+|. +|||||+|++.++|++|+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------------------------~g~afV~f~~~~~A~~A~ 62 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------------------------NAFGFIQFDNPQSVRDAI 62 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------------------------TTEEEEEESCHHHHHHHH
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------------------------CCEEEEEECCHHHHHHHH
Confidence 3678999999998 99999999999999999999982 679999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeeec
Q 009552 365 AELNDEGNWRSGLRVRLMLRR 385 (532)
Q Consensus 365 ~~Ln~~~~~~~glrV~l~~k~ 385 (532)
+.|++..++++.|+|.+...+
T Consensus 63 ~~l~g~~~~g~~l~V~~a~~~ 83 (96)
T 2kvi_A 63 ECESQEMNFGKKLILEVSSSN 83 (96)
T ss_dssp HHHTCSSCBTTTBCEEEEECC
T ss_pred HHcCCCeeCCcEEEEEEcCcC
Confidence 999999999999999988653
No 78
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.6e-14 Score=122.09 Aligned_cols=79 Identities=20% Similarity=0.181 Sum_probs=69.3
Q ss_pred cceeEEEecCCCcCcHHHHH----HHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLM----KIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~----elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~Aek 362 (532)
..++|||+|||.++++++|+ ++|++||.|..|+|..++. . ++||||+|++.++|++
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~-------------------~-rg~afV~f~~~~~A~~ 67 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTD-------------------Y-QLKAVVQMENLQDAIG 67 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCS-------------------T-TCCEEEEESSHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCC-------------------C-CeEEEEEECCHHHHHH
Confidence 45799999999999999999 9999999999999976531 0 5699999999999999
Q ss_pred HHHHHcCCCCCCCceEEEEeeec
Q 009552 363 AIAELNDEGNWRSGLRVRLMLRR 385 (532)
Q Consensus 363 Av~~Ln~~~~~~~glrV~l~~k~ 385 (532)
||+.||+..+.++.|+|.++..+
T Consensus 68 Ai~~l~g~~~~gr~l~V~~a~~~ 90 (96)
T 2dgx_A 68 AVNSLHRYKIGSKKILVSLATGA 90 (96)
T ss_dssp HHHHHTTEEETTEEEEEEECCCS
T ss_pred HHHHhCCCEECCeEEEEEEcCCC
Confidence 99999999888888888877543
No 79
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.54 E-value=1.9e-14 Score=119.64 Aligned_cols=79 Identities=24% Similarity=0.242 Sum_probs=69.7
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
..++|||+|||.++++++|+++|+.||.|..|+|+++. + ..+|||||+|++.++|++|++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~------------g-------~~~g~afV~f~~~~~a~~a~~~ 67 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMEN------------G-------KSKGCGVVKFESPEVAERACRM 67 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESS------------S-------CEEEEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccC------------C-------CcceEEEEEECCHHHHHHHHHH
Confidence 56899999999999999999999999999999997521 1 1378999999999999999999
Q ss_pred HcCCCCCCCceEEEEeee
Q 009552 367 LNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 367 Ln~~~~~~~glrV~l~~k 384 (532)
|++..+.++.|+|.+...
T Consensus 68 l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 68 MNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp HTTCCBTTBCCCCEECSC
T ss_pred hCCCEECCcEEEEEEcCC
Confidence 999999988888887654
No 80
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.7e-14 Score=122.77 Aligned_cols=80 Identities=16% Similarity=0.154 Sum_probs=69.7
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhh-cCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSA-VGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~-fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
..++|||+|||.++|+++|+++|+. ||.|..|+|+++. + ++ .+|||||+|++.++|++||+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~----------g~-------~~g~afV~f~~~~~a~~A~~ 69 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-T----------GV-------SKGYGFVKFTDELEQKRALT 69 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-T----------CC-------EEEEEEEEESCHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-C----------CC-------ccceEEEEECCHHHHHHHHH
Confidence 5689999999999999999999999 9999999998753 1 11 37899999999999999999
Q ss_pred HHcCCC-CCCCceEEEEeee
Q 009552 366 ELNDEG-NWRSGLRVRLMLR 384 (532)
Q Consensus 366 ~Ln~~~-~~~~glrV~l~~k 384 (532)
.|++.. +.++.|+|.+...
T Consensus 70 ~l~g~~~~~g~~l~v~~a~~ 89 (104)
T 2dhg_A 70 ECQGAVGLGSKPVRLSVAIP 89 (104)
T ss_dssp HTTTCCSSSSSCCCCCBCCC
T ss_pred HccCCcccCCEeEEEEEccC
Confidence 999988 8888888776643
No 81
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=1.5e-14 Score=122.43 Aligned_cols=77 Identities=27% Similarity=0.318 Sum_probs=69.4
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
...++|||+|||.++|+++|+++|+.||.|..|+|.++ |+||||+|++.++|++|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-----------------------kg~afV~f~~~~~a~~a~~ 69 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----------------------KGFGFIRLETRTLAEIAKV 69 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-----------------------TTEEEEECSSSHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----------------------CCEEEEEECCHHHHHHHHH
Confidence 35689999999999999999999999999999999632 6799999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeec
Q 009552 366 ELNDEGNWRSGLRVRLMLRR 385 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~k~ 385 (532)
.|++..++++.|+|.+...+
T Consensus 70 ~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 70 ELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp HHTTCCBTTBCCEEEESSCC
T ss_pred HhCCCEeCCceEEEEEcCCC
Confidence 99999999999998887543
No 82
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.54 E-value=4.8e-14 Score=128.88 Aligned_cols=83 Identities=18% Similarity=0.187 Sum_probs=71.8
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
...++|||+|||.++|+++|+++|+.||.|..|+|.++..+ ++ .+|||||+|++.++|++||+
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~----------g~-------~~g~afV~f~~~~~a~~A~~ 130 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYT----------KE-------SRGFAFVRFHDKRDAEDAMD 130 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSC----------TT-------SCCEEEEEESBHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC----------Cc-------cceEEEEEECCHHHHHHHHH
Confidence 45689999999999999999999999999999999765422 11 37899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeec
Q 009552 366 ELNDEGNWRSGLRVRLMLRR 385 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~k~ 385 (532)
.||+..+.++.|+|.+...+
T Consensus 131 ~l~g~~~~g~~l~v~~a~~~ 150 (158)
T 2kn4_A 131 AMDGAVLDGRELRVQMARYG 150 (158)
T ss_dssp HSTTEESSSSEEEEEEECCS
T ss_pred HhCCCEECCeEEEEEECCCC
Confidence 99999988888888877543
No 83
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.7e-14 Score=120.49 Aligned_cols=74 Identities=26% Similarity=0.215 Sum_probs=66.8
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
...++|||+|||.++|+++|+++|+.||.|..|+|. ++||||+|++.++|++|++
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-------------------------~~~afV~f~~~~~a~~A~~ 62 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-------------------------KDYAFVHMERAEDAVEAIR 62 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-------------------------SSEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-------------------------CCEEEEEECCHHHHHHHHH
Confidence 467899999999999999999999999999999984 3489999999999999999
Q ss_pred HHcCCCCCCCceEEEEeee
Q 009552 366 ELNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~k 384 (532)
.||+..+.++.|+|.+...
T Consensus 63 ~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 63 GLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp HHTTEEETTEEEEEEESSC
T ss_pred HhCCCeeCCcEEEEEEccC
Confidence 9999988888888877654
No 84
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.54 E-value=1.1e-14 Score=134.92 Aligned_cols=81 Identities=19% Similarity=0.140 Sum_probs=70.5
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcC--CeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVG--SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG--~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv 364 (532)
..++|||+|||+++|+++|+++|+.|| .|..|+|++++.++ ..||||||+|++.++|++||
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg-----------------~skGfaFV~f~~~~~A~~Ai 116 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANG-----------------QSKGYAEVVVASENSVHKLL 116 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTC-----------------CEEEEEEEEESCHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCC-----------------ccceEEEEEECCHHHHHHHH
Confidence 457999999999999999999999999 99999998765322 13889999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeee
Q 009552 365 AELNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 365 ~~Ln~~~~~~~glrV~l~~k 384 (532)
+.||+..+.++.|+|.++..
T Consensus 117 ~~lng~~~~Gr~l~V~~a~~ 136 (156)
T 3n9u_C 117 ELLPGKVLNGEKVDVRPATR 136 (156)
T ss_dssp HHSTTCEETTEECEEEECCH
T ss_pred HHcCCCEECCeEeEEEEcCC
Confidence 99999999998888887754
No 85
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.54 E-value=3.4e-14 Score=120.50 Aligned_cols=75 Identities=28% Similarity=0.260 Sum_probs=68.2
Q ss_pred eeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHHc
Q 009552 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (532)
Q Consensus 289 rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~Ln 368 (532)
++|||+|||.++|+++|+++|++||.|..|+|..+ .+|||||+|++.++|++|++.|+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----------------------~~g~afV~f~~~~~a~~A~~~l~ 58 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----------------------PPGFAFVEFEDPRDAEDAVRGLD 58 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----------------------SSSEEEEECSSHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----------------------CCCEEEEEECCHHHHHHHHHHHC
Confidence 48999999999999999999999999999999642 27899999999999999999999
Q ss_pred CCCCCCCceEEEEeeec
Q 009552 369 DEGNWRSGLRVRLMLRR 385 (532)
Q Consensus 369 ~~~~~~~glrV~l~~k~ 385 (532)
+..++++.|+|.+...+
T Consensus 59 g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 59 GKVICGSRVRVELSTGM 75 (101)
T ss_dssp HSCSSSCCCEEEESSSC
T ss_pred CCeECCcEEEEEEccCC
Confidence 99999999999887653
No 86
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=8.7e-15 Score=117.62 Aligned_cols=76 Identities=13% Similarity=0.129 Sum_probs=66.2
Q ss_pred eeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHHc
Q 009552 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (532)
Q Consensus 289 rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~Ln 368 (532)
++|||+|||.++++++|+++|++||.|..|+|.++..+ + .++|||||+|++.++|++|++.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~----------~-------~~~g~afV~f~~~~~a~~a~~~~~ 63 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLT----------K-------RSRGFGFVTFMDQAGVDKVLAQSR 63 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCS----------S-------SCSSEEEECCCCTTHHHHHHHTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCC----------C-------CcCceEEEEEcCHHHHHHHHHhCC
Confidence 58999999999999999999999999999999865321 1 137899999999999999999988
Q ss_pred CCCCCCCceEEEEe
Q 009552 369 DEGNWRSGLRVRLM 382 (532)
Q Consensus 369 ~~~~~~~glrV~l~ 382 (532)
..++++.|+|.++
T Consensus 64 -~~~~g~~l~v~~a 76 (77)
T 1uaw_A 64 -HELDSKTIDPKVA 76 (77)
T ss_dssp -CCCSSCCCEEEEC
T ss_pred -CccCCEEEEEEec
Confidence 7888888888764
No 87
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.53 E-value=2.1e-14 Score=122.43 Aligned_cols=79 Identities=18% Similarity=0.278 Sum_probs=68.5
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
..++|||+|||.++++++|+++|+.|| |..|+|+++..+ + .++|||||+|++.++|++|| .
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~----------g-------~~~g~afV~f~~~~~a~~A~-~ 74 (103)
T 2dng_A 14 PPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDT----------D-------KFKGFCYVEFDEVDSLKEAL-T 74 (103)
T ss_dssp SCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSS----------C-------SEEEEEEEEESSHHHHHHHG-G
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCC----------C-------ccceEEEEEECCHHHHHHHH-h
Confidence 568999999999999999999999997 999999876422 1 13789999999999999999 8
Q ss_pred HcCCCCCCCceEEEEeee
Q 009552 367 LNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 367 Ln~~~~~~~glrV~l~~k 384 (532)
||+..+.++.|+|.+...
T Consensus 75 l~g~~~~g~~l~V~~a~~ 92 (103)
T 2dng_A 75 YDGALLGDRSLRVDIAEG 92 (103)
T ss_dssp GTTCEETTEECEEEECCC
T ss_pred hCCCeECCeEEEEEEecC
Confidence 999988888888887654
No 88
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.2e-14 Score=125.95 Aligned_cols=81 Identities=17% Similarity=0.237 Sum_probs=70.9
Q ss_pred hccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHH
Q 009552 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (532)
Q Consensus 285 ~~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv 364 (532)
....++|||+|||.++|+++|+++|++||.|..|+|+++.. ..+|||||+|++.++|++|+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-------------------~~kg~afV~f~~~~~A~~Ai 86 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-------------------GSKGFGFVTFENSADADRAR 86 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-------------------BCTTEEEEECCCSHHHHHHH
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-------------------CCceEEEEEECCHHHHHHHH
Confidence 34678999999999999999999999999999999976421 13789999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeee
Q 009552 365 AELNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 365 ~~Ln~~~~~~~glrV~l~~k 384 (532)
+.|++..++++.|+|.+...
T Consensus 87 ~~l~g~~~~g~~l~V~~a~~ 106 (109)
T 2err_A 87 EKLHGTVVEGRKIEVNNATA 106 (109)
T ss_dssp HHHTTCEETTEECEEEECCC
T ss_pred HHcCCCEECCEEEEEEECCC
Confidence 99999998888888887653
No 89
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.9e-14 Score=124.07 Aligned_cols=77 Identities=19% Similarity=0.176 Sum_probs=68.5
Q ss_pred hccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHH
Q 009552 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (532)
Q Consensus 285 ~~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv 364 (532)
....++|||+|||.++|+++|+++|+.||.|..|+|+++ +|||||+|++.++|++||
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----------------------~g~afV~f~~~~~a~~A~ 78 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----------------------KGYSFVRFSTHESAAHAI 78 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----------------------TTEEEEEESSHHHHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----------------------CCEEEEEECCHHHHHHHH
Confidence 346789999999999999999999999999999999642 679999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeee
Q 009552 365 AELNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 365 ~~Ln~~~~~~~glrV~l~~k 384 (532)
+.|++..++++.|+|.+...
T Consensus 79 ~~l~g~~~~g~~l~v~~a~~ 98 (109)
T 1x4g_A 79 VSVNGTTIEGHVVKCYWGKE 98 (109)
T ss_dssp HHHTTCEETTEECEEECCCC
T ss_pred HHcCCCEECCcEEEEEecCC
Confidence 99999988888787776644
No 90
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.53 E-value=1.5e-14 Score=127.21 Aligned_cols=83 Identities=22% Similarity=0.260 Sum_probs=70.7
Q ss_pred hhhccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHH
Q 009552 283 LEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (532)
Q Consensus 283 ~~~~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~Aek 362 (532)
..+...++|||+|||.++|+++|+++|+.||.|..|+|+++..++ .++|||||+|++.++|++
T Consensus 31 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~a~~ 93 (124)
T 2jwn_A 31 KKEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSG-----------------HPKGYAYIEFAERNSVDA 93 (124)
T ss_dssp HHHHHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTS-----------------SCEEEEEEEESSHHHHHH
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCC-----------------CcccEEEEEECCHHHHHH
Confidence 345567999999999999999999999999999999998753211 238899999999999999
Q ss_pred HHHHHcCCCCCCCceEEEEee
Q 009552 363 AIAELNDEGNWRSGLRVRLML 383 (532)
Q Consensus 363 Av~~Ln~~~~~~~glrV~l~~ 383 (532)
|| .||+..++++.|+|.+..
T Consensus 94 A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 94 AV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HH-TTTTCEETTEECEEEESS
T ss_pred HH-hcCCCeECCeEEEEEECC
Confidence 99 799998888878777654
No 91
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=6.6e-15 Score=127.80 Aligned_cols=87 Identities=20% Similarity=0.223 Sum_probs=72.2
Q ss_pred hccceeEEEecCCCcCcHHHHH---HHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHH
Q 009552 285 ELQSRIVVAENLPEDHCHQNLM---KIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAE 361 (532)
Q Consensus 285 ~~~~rtVyV~nLP~d~t~edL~---elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~Ae 361 (532)
.++.++|||+|||.++++++|+ ++|++||.|..|+|..+...+. + ..++|||||+|++.++|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~-------~-------~~~~G~afV~f~~~~~A~ 77 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAG-------S-------QGPSASAYVTYIRSEDAL 77 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCS-------S-------SCCCEEEEEEESSHHHHH
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCc-------c-------CCCCeEEEEEECcHHHHH
Confidence 3467899999999999999999 9999999999999987643211 1 123789999999999999
Q ss_pred HHHHHHcCCCCCCCceEEEEeeec
Q 009552 362 KAIAELNDEGNWRSGLRVRLMLRR 385 (532)
Q Consensus 362 kAv~~Ln~~~~~~~glrV~l~~k~ 385 (532)
+||+.||+..++++.|+|.++..+
T Consensus 78 ~Ai~~lng~~~~gr~l~V~~a~~k 101 (111)
T 2cpi_A 78 RAIQCVNNVVVDGRTLKASLGTTK 101 (111)
T ss_dssp HHHHHHTTEEETTEEEEEESCCCC
T ss_pred HHHHHhCCCEECCEEEEEEecccc
Confidence 999999999988888887766543
No 92
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=2.2e-14 Score=121.06 Aligned_cols=76 Identities=26% Similarity=0.323 Sum_probs=67.1
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
..++|||+|||.++|+++|+++|+.||.|. ++|+.+ ..+|||||+|++.++|++|++.
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~---------------------~~~g~afV~f~~~~~a~~A~~~ 75 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ---------------------GPRRRAFLHYPDSAAAQQAVSC 75 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE---------------------TTTTEEEEECSSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC---------------------CCCcEEEEEECCHHHHHHHHHH
Confidence 568999999999999999999999999997 666432 1378999999999999999999
Q ss_pred HcCCCCCCCceEEEEeee
Q 009552 367 LNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 367 Ln~~~~~~~glrV~l~~k 384 (532)
||+..+.++.|+|.+...
T Consensus 76 l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 76 LQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp HTTCCSSSSCCEEEECCC
T ss_pred hCCCEECCcEEEEEEcCC
Confidence 999999999999988754
No 93
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.53 E-value=3.9e-14 Score=124.86 Aligned_cols=81 Identities=16% Similarity=0.169 Sum_probs=71.4
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
..++|||+|||.++++++|+++|+.||.|..|+|+++. + ++ .+|||||+|++.++|++|++.
T Consensus 34 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~----------g~-------~~g~afV~f~~~~~A~~Ai~~ 95 (124)
T 2kt5_A 34 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-S----------GR-------SLGTADVHFERRADALKAMKQ 95 (124)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-S----------SS-------CCSEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-C----------CC-------EeeEEEEEECCHHHHHHHHHH
Confidence 56899999999999999999999999999999998653 1 11 378999999999999999999
Q ss_pred HcCCCCCCCceEEEEeeec
Q 009552 367 LNDEGNWRSGLRVRLMLRR 385 (532)
Q Consensus 367 Ln~~~~~~~glrV~l~~k~ 385 (532)
||+..+.++.|+|.++...
T Consensus 96 l~g~~~~g~~l~V~~a~~~ 114 (124)
T 2kt5_A 96 YKGVPLDGRPMDIQLVASQ 114 (124)
T ss_dssp HTTEESSSCEEEEEEECCT
T ss_pred cCCCEECCcEEEEEEeCCC
Confidence 9999998888888887653
No 94
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.53 E-value=1.5e-14 Score=119.30 Aligned_cols=79 Identities=13% Similarity=0.170 Sum_probs=65.1
Q ss_pred hccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHH
Q 009552 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (532)
Q Consensus 285 ~~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv 364 (532)
+...++|||+|||.++|+++|+++|+.||.|..|+|+++..+ + .++|||||+|++.++|++|+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~----------g-------~~~g~afV~f~~~~~a~~A~ 70 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNT----------G-------RSRGFGFILFKDAASVEKVL 70 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTT----------C-------CEEEEEEEEESSTHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCC----------C-------ccccEEEEEECCHHHHHHHH
Confidence 346789999999999999999999999999999999876421 1 13889999999999999999
Q ss_pred HHHcCCCCCCCceEEEE
Q 009552 365 AELNDEGNWRSGLRVRL 381 (532)
Q Consensus 365 ~~Ln~~~~~~~glrV~l 381 (532)
+ +++..++++.|+|..
T Consensus 71 ~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 71 D-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp H-SSCEEETTEEEEEEE
T ss_pred H-hCCCEECCEEEEEEe
Confidence 6 566666666666654
No 95
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.7e-14 Score=122.58 Aligned_cols=82 Identities=20% Similarity=0.210 Sum_probs=69.2
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCC-eeEEEEe-CCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGS-VKTIRTC-LPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~-V~~Vri~-~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv 364 (532)
..++|||+|||.++|+++|+++|+.||. |..|+|+ .+..+ + ..+|||||+|++.++|++|+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~----------g-------~~~g~afV~f~~~~~A~~A~ 69 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADK----------M-------KNRGFAFVEYESHRAAAMAR 69 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTT----------T-------TTCCEEEEEESSHHHHHHHH
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCC----------C-------CcCcEEEEEecCHHHHHHHH
Confidence 5689999999999999999999999998 9999986 43221 1 23789999999999999999
Q ss_pred HHHc--CCCCCCCceEEEEeeec
Q 009552 365 AELN--DEGNWRSGLRVRLMLRR 385 (532)
Q Consensus 365 ~~Ln--~~~~~~~glrV~l~~k~ 385 (532)
+.|+ +..++++.|+|.++..+
T Consensus 70 ~~l~~g~~~~~g~~l~V~~a~~~ 92 (109)
T 2dis_A 70 RKLMPGRIQLWGHQIAVDWAEPE 92 (109)
T ss_dssp TTTTTCCSCBTTBCCEEEESCSS
T ss_pred HHhhCCCceecCCeEEEEEcCCC
Confidence 9996 47788888988887543
No 96
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.52 E-value=8.9e-14 Score=125.61 Aligned_cols=81 Identities=15% Similarity=0.123 Sum_probs=70.5
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
...++|||+|||.++|+++|+++|+.||.|..|+|.++..+ + .++|||||+|++.++|++|++
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~----------~-------~~~g~afV~f~~~~~A~~A~~ 147 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQT----------G-------SSRGYGFVSFTSQDDAQNAMD 147 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTT----------C-------CEEEEEEEEESCHHHHHHHHH
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCC----------C-------CcceEEEEEeCCHHHHHHHHH
Confidence 35789999999999999999999999999999999865321 1 237899999999999999999
Q ss_pred HHcCCCCCCCceEEEEee
Q 009552 366 ELNDEGNWRSGLRVRLML 383 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~ 383 (532)
.||+..+.++.|+|.++.
T Consensus 148 ~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 148 SMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp HHTTCEETTEECEEEESC
T ss_pred HhCCCccCCcEEEEEecC
Confidence 999999888888887753
No 97
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.7e-14 Score=125.48 Aligned_cols=81 Identities=14% Similarity=0.131 Sum_probs=67.5
Q ss_pred hccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHH
Q 009552 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (532)
Q Consensus 285 ~~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv 364 (532)
....++|||+|||.++|+++|+++|+.||.|..|+|+++..+ + ..+|||||+|++.++|++||
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~----------g-------~~~g~afV~f~~~~~a~~Ai 86 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPAS----------K-------RSRGFGFVTFSSMAEVDAAM 86 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTT----------S-------SCCSEEEEECSSHHHHHHHH
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCC----------C-------CcCceEEEEeCCHHHHHHHH
Confidence 346789999999999999999999999999999999876422 1 13789999999999999999
Q ss_pred HHHcCCCCCCCceEEEEee
Q 009552 365 AELNDEGNWRSGLRVRLML 383 (532)
Q Consensus 365 ~~Ln~~~~~~~glrV~l~~ 383 (532)
+. ++..+.++.|+|.+..
T Consensus 87 ~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 87 AA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp TS-CSEEETTEEEEEECCS
T ss_pred Hh-CCcEECCEEEEEEECC
Confidence 87 7777777666666554
No 98
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.52 E-value=2e-14 Score=129.61 Aligned_cols=83 Identities=18% Similarity=0.180 Sum_probs=72.3
Q ss_pred hccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHH
Q 009552 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (532)
Q Consensus 285 ~~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv 364 (532)
....++|||+|||.++|+++|+++|+.||.|..|+|+++..+ + ..+|||||+|++.++|++||
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~----------g-------~~~G~afV~F~~~~~A~~Ai 106 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYT----------K-------ESRGFAFVRFHDKRDAEDAM 106 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSS----------S-------SCCSCCEEECSCHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCC----------C-------ccceEEEEEECCHHHHHHHH
Confidence 346789999999999999999999999999999999765321 1 13789999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeee
Q 009552 365 AELNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 365 ~~Ln~~~~~~~glrV~l~~k 384 (532)
+.||+..++++.|+|.+...
T Consensus 107 ~~l~g~~i~g~~l~V~~a~~ 126 (135)
T 2lea_A 107 DAMDGAVLDGRELRVQMARY 126 (135)
T ss_dssp TTTTTCCSSSSCCEEEECCC
T ss_pred HHcCCCEECCEEEEEEECCC
Confidence 99999999999999988754
No 99
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.52 E-value=9.7e-15 Score=121.16 Aligned_cols=80 Identities=21% Similarity=0.271 Sum_probs=68.2
Q ss_pred eeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHHc
Q 009552 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (532)
Q Consensus 289 rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~Ln 368 (532)
++|||+|||.++++++|+++|+.||.|..|+|.++..+ + .++|||||+|++.+ |++|++.||
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~----------~-------~~~g~afV~f~~~~-a~~a~~~l~ 63 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRET----------K-------KPKGFGFVEMQEES-VSEAIAKLD 63 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSS----------C-------CCCEEEEEEECTTH-HHHHHHTSC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCC----------C-------CcceEEEEEECCHH-HHHHHHHhC
Confidence 68999999999999999999999999999999765422 1 13789999999999 999999999
Q ss_pred CCCCCCCceEEEEeeecC
Q 009552 369 DEGNWRSGLRVRLMLRRG 386 (532)
Q Consensus 369 ~~~~~~~glrV~l~~k~~ 386 (532)
+..+.++.|+|.++....
T Consensus 64 g~~~~g~~l~V~~a~~~~ 81 (90)
T 2ki2_A 64 NTDFMGRTIRVTEANPKK 81 (90)
T ss_dssp SSCCSSSSCSEEEC----
T ss_pred CCEECCeEEEEEEcCCCC
Confidence 999999999999876543
No 100
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.1e-14 Score=119.56 Aligned_cols=73 Identities=23% Similarity=0.306 Sum_probs=62.5
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
..++|||+|||.++++++|+++|+.||.|..|+|.++..+ + ..+|||||+|++.++|++|++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~----------~-------~~~g~afV~f~~~~~a~~A~~~ 66 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTT----------N-------KCKGYGFVDFDSPSAAQKAVTA 66 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSS----------C-------SCCSEEEEEESCHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC----------C-------CcCcEEEEEECCHHHHHHHHHH
Confidence 4689999999999999999999999999999999876422 1 1378999999999999999999
Q ss_pred HcCCCCCCCc
Q 009552 367 LNDEGNWRSG 376 (532)
Q Consensus 367 Ln~~~~~~~g 376 (532)
||+..+.++-
T Consensus 67 l~g~~~~g~~ 76 (85)
T 1x4e_A 67 LKASGVQAQM 76 (85)
T ss_dssp HHHHTCCEES
T ss_pred hcCCeEeeEE
Confidence 9987655443
No 101
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.52 E-value=1.5e-14 Score=118.17 Aligned_cols=73 Identities=23% Similarity=0.265 Sum_probs=62.8
Q ss_pred ceeEEEecCCCcC------cHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHH
Q 009552 288 SRIVVAENLPEDH------CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAE 361 (532)
Q Consensus 288 ~rtVyV~nLP~d~------t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~Ae 361 (532)
+++|||+|||.++ |+++|+++|++||.|..|+|.+. ++ .+||||||+|++.++|+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~------------~g-------~~~g~afV~f~~~~~A~ 61 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEE------------DG-------KTKGYIFLEYASPAHAV 61 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCB------------TT-------BCCCEEEEEESSHHHHH
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCC------------CC-------cEeEEEEEEECCHHHHH
Confidence 3799999999999 78999999999999999998521 11 23789999999999999
Q ss_pred HHHHHHcCCCCCCC-ceEE
Q 009552 362 KAIAELNDEGNWRS-GLRV 379 (532)
Q Consensus 362 kAv~~Ln~~~~~~~-glrV 379 (532)
+|++.||+..++++ .|+|
T Consensus 62 ~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 62 DAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp HHHTTSSSCCCSSSSCCCC
T ss_pred HHHHHhcCcccCCceeEEe
Confidence 99999999988887 6765
No 102
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=1.9e-14 Score=117.95 Aligned_cols=74 Identities=19% Similarity=0.192 Sum_probs=65.2
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
...++|||+|||.++|+++|+++|++||.|..|+|.+ +||||||+|++.++|++|++
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~-----------------------~kg~afV~f~~~~~A~~a~~ 66 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ-----------------------RQQCAFIQFATRQAAEVAAE 66 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG-----------------------GGTEEEEEESSHHHHHHHHH
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC-----------------------CCCEEEEEECCHHHHHHHHH
Confidence 3568999999999999999999999999999999963 16899999999999999999
Q ss_pred HH-cCCCCCCCceEEEEe
Q 009552 366 EL-NDEGNWRSGLRVRLM 382 (532)
Q Consensus 366 ~L-n~~~~~~~glrV~l~ 382 (532)
.| ++..++++.|+|.++
T Consensus 67 ~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 67 KSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp TTTTTCEETTEECCEEEC
T ss_pred HhcCCeeECCCEEEEEec
Confidence 88 887777777777653
No 103
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.52 E-value=2.2e-14 Score=124.39 Aligned_cols=81 Identities=12% Similarity=0.119 Sum_probs=65.6
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
...++|||+|||.++|+++|+++|+.||.|..|+|+++..+ + .++|||||+|++.++|++||+
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~t----------g-------~~kg~afV~f~~~~~A~~Ai~ 85 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLT----------K-------RSRGFGFVTFMDQAGVDKVLA 85 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTT----------C-------CCTTCEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCC----------C-------CcCcEEEEEECCHHHHHHHHH
Confidence 46789999999999999999999999999999999875422 1 137899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeee
Q 009552 366 ELNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~k 384 (532)
.++ ..+.++.|+|.+...
T Consensus 86 ~~~-~~l~g~~l~V~~a~~ 103 (109)
T 2rs2_A 86 QSR-HELDSKTIDPKVAFP 103 (109)
T ss_dssp SSC-EEETTEEEEEEECCC
T ss_pred HCC-CcCCCEEEEEEEccC
Confidence 764 666677777776654
No 104
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=9.6e-15 Score=123.08 Aligned_cols=80 Identities=18% Similarity=0.171 Sum_probs=68.2
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
..++|||+|||.++++++|+++|+.||.|..++++.+..+ + ..+|||||+|++.++|++||+.
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~----------g-------~~~g~afV~f~~~~~a~~Ai~~ 76 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEK----------G-------MPTGEAMVAFESRDEATAAVID 76 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSS----------S-------CEEEEEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCC----------C-------CeeeEEEEEECCHHHHHHHHHH
Confidence 4579999999999999999999999999987777654321 1 1378999999999999999999
Q ss_pred HcCCCCCCCceEEEEee
Q 009552 367 LNDEGNWRSGLRVRLML 383 (532)
Q Consensus 367 Ln~~~~~~~glrV~l~~ 383 (532)
||+..++++.|+|.+..
T Consensus 77 l~g~~~~g~~l~V~~a~ 93 (98)
T 2cqp_A 77 LNDRPIGSRKVKLVLGS 93 (98)
T ss_dssp TTTCEETTEECEEEESS
T ss_pred hCCCeeCCeEEEEEEcC
Confidence 99998888888888764
No 105
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=4.3e-14 Score=122.46 Aligned_cols=80 Identities=21% Similarity=0.187 Sum_probs=68.9
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
...++|||+|||.++|+++|+++|+.||.|..|+|+++. + + ..+|||||+|++.++|++||+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~----------g-------~~~g~afV~f~~~~~a~~A~~ 84 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-S----------G-------TSRGVGFARMESTEKCEAVIG 84 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-S----------S-------CEEEEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-C----------C-------CcceEEEEEECCHHHHHHHHH
Confidence 456899999999999999999999999999999998653 1 1 137899999999999999999
Q ss_pred HHcCCCC--------CCCceEEEEee
Q 009552 366 ELNDEGN--------WRSGLRVRLML 383 (532)
Q Consensus 366 ~Ln~~~~--------~~~glrV~l~~ 383 (532)
.||+..+ +.+.|+|.++.
T Consensus 85 ~l~g~~~~~~~~~~~~~~~l~v~~a~ 110 (114)
T 1x5o_A 85 HFNGKFIKTPPGVSAPTEPLLCKFSG 110 (114)
T ss_dssp HHBTCCCCCCTTSCCCSSCBEEEECC
T ss_pred HhCCCEEcCCccccCCCCceeEEccC
Confidence 9999887 56667777664
No 106
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.51 E-value=1e-14 Score=122.03 Aligned_cols=79 Identities=15% Similarity=0.155 Sum_probs=66.8
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
..++|||+|||.++|+++|+++|+.||.|..++++.++.+ + ..+|||||+|++.++|++||+.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~----------g-------~~~g~afV~f~~~~~a~~Ai~~ 76 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEK----------G-------MPTGEAMVAFESRDEATAAVID 76 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTT----------S-------CEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCC----------C-------CEeeEEEEEECCHHHHHHHHHH
Confidence 4589999999999999999999999999988887654321 1 2378999999999999999999
Q ss_pred HcCCCCCCCceEEEEe
Q 009552 367 LNDEGNWRSGLRVRLM 382 (532)
Q Consensus 367 Ln~~~~~~~glrV~l~ 382 (532)
||+..+.++.|+|.+.
T Consensus 77 l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 77 LNDRPIGSRKVKLSGP 92 (95)
T ss_dssp HTTCEETTEECEEECC
T ss_pred hCCCeECCcEEEEEec
Confidence 9999888887777654
No 107
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.51 E-value=4.5e-14 Score=119.91 Aligned_cols=74 Identities=20% Similarity=0.339 Sum_probs=66.5
Q ss_pred hccceeEEEecCCC-cCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHH
Q 009552 285 ELQSRIVVAENLPE-DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (532)
Q Consensus 285 ~~~~rtVyV~nLP~-d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekA 363 (532)
....++|||+|||. ++++++|+++|+.||.|..|+|. +|||||+|++.++|++|
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-------------------------~g~afV~f~~~~~A~~A 73 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------------------------NAFGFIQFDNPQSVRDA 73 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-------------------------SSEEEEEESSHHHHHHH
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------------------------CCEEEEEECCHHHHHHH
Confidence 34678999999998 99999999999999999999982 67999999999999999
Q ss_pred HHHHcCCCCCCCceEEEEee
Q 009552 364 IAELNDEGNWRSGLRVRLML 383 (532)
Q Consensus 364 v~~Ln~~~~~~~glrV~l~~ 383 (532)
++.||+..+.++.|+|.+..
T Consensus 74 i~~l~g~~~~g~~l~V~~a~ 93 (97)
T 2xnq_A 74 IEXESQEMNFGKKLILEVSS 93 (97)
T ss_dssp HHHHTTSEETTEECEEEECC
T ss_pred HHHcCCCEECCEEEEEEecC
Confidence 99999988888888887654
No 108
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.51 E-value=4.3e-14 Score=133.83 Aligned_cols=83 Identities=19% Similarity=0.252 Sum_probs=72.5
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
...++|||+|||.++|+++|+++|+.||.|..|+|+++..+ + .++|||||+|++.++|++|++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~----------g-------~~~g~afV~F~~~~~A~~A~~ 185 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTT----------G-------KHKGYGFIEYEKAQSSQDAVS 185 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTT----------C-------CEEEEEEEEESSHHHHHHHHH
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCC----------C-------CcCceEEEEecCHHHHHHHHH
Confidence 45689999999999999999999999999999999875321 1 137899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeec
Q 009552 366 ELNDEGNWRSGLRVRLMLRR 385 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~k~ 385 (532)
.||+..+.++.|+|.+....
T Consensus 186 ~l~g~~~~g~~i~V~~a~~~ 205 (216)
T 2qfj_A 186 SMNLFDLGGQYLRVGKAVTP 205 (216)
T ss_dssp HHTTCBCSSSBCEEEECSSC
T ss_pred HccCCEeCCcEEEEEEecCC
Confidence 99999999999998887644
No 109
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.51 E-value=1.6e-14 Score=129.03 Aligned_cols=81 Identities=11% Similarity=0.161 Sum_probs=70.0
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeE--EEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKT--IRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~--Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekA 363 (532)
...++|||+|||+++|+++|+++|+.||.|.. |+|++++.+ + .+||||||+|++. +|++|
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~t----------g-------~~rG~aFV~f~~~-~a~~A 82 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQT----------Q-------LNRGFAFIQLSTI-EAAQL 82 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSS----------S-------SBCSCEEEECCHH-HHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCC----------C-------CcceEEEEEECCH-HHHHH
Confidence 45689999999999999999999999999977 999876532 2 2378999999999 99999
Q ss_pred HHHHcCC----CCCCCceEEEEeee
Q 009552 364 IAELNDE----GNWRSGLRVRLMLR 384 (532)
Q Consensus 364 v~~Ln~~----~~~~~glrV~l~~k 384 (532)
|+.||+. .+.++.|+|.++..
T Consensus 83 i~~l~g~~~~~~~~gr~l~V~~a~~ 107 (131)
T 2m2b_A 83 LQILQALHPPLTIDGKTINVEFAKG 107 (131)
T ss_dssp HHHHTTCCCSCCGGGCCCCCEECCC
T ss_pred HHHhcCCCCCccCCCEEEEEEECCC
Confidence 9999998 88888888887643
No 110
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.51 E-value=2.5e-14 Score=114.66 Aligned_cols=74 Identities=15% Similarity=0.223 Sum_probs=64.0
Q ss_pred eEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHHcC
Q 009552 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (532)
Q Consensus 290 tVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~Ln~ 369 (532)
+|||+|||.++++++|+++|+.||.|..|+|.++..+ + .++|||||+|++.++|++|++ |++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~----------~-------~~~g~afV~f~~~~~a~~a~~-~~~ 62 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTT----------N-------RHRGFGFVTFESEDIVEKVCE-IHF 62 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSS----------T-------TSCBEEEEECSCHHHHHHHHS-SSC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCC----------C-------CcCcEEEEEECCHHHHHHHHH-CCC
Confidence 4899999999999999999999999999998765321 1 137899999999999999998 999
Q ss_pred CCCCCCceEEEE
Q 009552 370 EGNWRSGLRVRL 381 (532)
Q Consensus 370 ~~~~~~glrV~l 381 (532)
..+.++.|+|..
T Consensus 63 ~~~~g~~l~v~~ 74 (75)
T 2mss_A 63 HEINNKMVECKK 74 (75)
T ss_dssp CCSSSCCCEEEC
T ss_pred CEECCEEEEEEe
Confidence 888888888764
No 111
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.50 E-value=6.4e-14 Score=122.55 Aligned_cols=66 Identities=20% Similarity=0.171 Sum_probs=59.7
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
..++|||+|||+++|+++|+++|++||+|..|+|+. .|||||+|++.++|++||+.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~------------------------~g~afV~f~~~~~a~~Ai~~ 70 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYR------------------------DGTGVVEFVRKEDMTYAVRK 70 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECT------------------------TSEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEec------------------------CCEEEEEECCHHHHHHHHHH
Confidence 457999999999999999999999999999999853 16999999999999999999
Q ss_pred HcCCCCCCCc
Q 009552 367 LNDEGNWRSG 376 (532)
Q Consensus 367 Ln~~~~~~~g 376 (532)
||+..+.++.
T Consensus 71 l~g~~~~gr~ 80 (115)
T 3beg_B 71 LDNTKFRSHE 80 (115)
T ss_dssp HTTCBCCCTT
T ss_pred hCCCEECCcE
Confidence 9999888877
No 112
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.50 E-value=1.7e-13 Score=124.64 Aligned_cols=78 Identities=23% Similarity=0.227 Sum_probs=70.0
Q ss_pred hccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHH
Q 009552 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (532)
Q Consensus 285 ~~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv 364 (532)
....++|||+|||.++|+++|+++|+.||.|..|+|.++ .+|||||+|++.++|++|+
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----------------------~~g~afV~f~~~~~a~~A~ 127 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN----------------------PPGFAFVEFEDPRDAADAV 127 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS----------------------SCSEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC----------------------CCcEEEEEECCHHHHHHHH
Confidence 346789999999999999999999999999999999642 2789999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeee
Q 009552 365 AELNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 365 ~~Ln~~~~~~~glrV~l~~k 384 (532)
+.||+..++++.|+|.+...
T Consensus 128 ~~l~g~~~~g~~l~v~~a~~ 147 (150)
T 2i2y_A 128 RELDGRTLCGCRVRVELSNG 147 (150)
T ss_dssp HHHSSSCSSSSCCEEEECCC
T ss_pred HHcCCCEECCeEEEEEEcCC
Confidence 99999999999999887643
No 113
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=3.5e-14 Score=121.99 Aligned_cols=79 Identities=16% Similarity=0.144 Sum_probs=66.6
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
...++|||+|||+++|+++|+++|+.||. ..|+|++++ +++ +||||||+|++.++|++||+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-----------~g~-------~~G~afV~F~~~~~a~~Al~ 73 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-----------DGR-------VTGEADVEFATHEDAVAAMA 73 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-----------SSC-------EEEEEEEECSSSHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-----------CCC-------EeeEEEEEECCHHHHHHHHH
Confidence 35689999999999999999999999995 499998753 112 38899999999999999995
Q ss_pred HHcCCCCCCCceEEEEeee
Q 009552 366 ELNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~k 384 (532)
+|+..+.++.|+|.+...
T Consensus 74 -~~~~~~~gr~i~V~~~~~ 91 (102)
T 1wez_A 74 -KDKANMQHRYVELFLNST 91 (102)
T ss_dssp -TSSCCSSSSCCEEEEECC
T ss_pred -hCCCeECCcEEEEEECCC
Confidence 798888888888876543
No 114
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=1.2e-14 Score=124.13 Aligned_cols=80 Identities=13% Similarity=0.096 Sum_probs=66.8
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
...++|||+|||.++++++|+++|+.||.|..|+|++++.++ ..+|||||+|++.++|++||+
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g-----------------~~~g~afV~f~~~~~a~~a~~ 76 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTN-----------------QSRGFGFVKFKDPNCVGTVLA 76 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSC-----------------CEEEEEEEEESSTTHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCC-----------------CcceEEEEEECCHHHHHHHHH
Confidence 356899999999999999999999999999999998764211 137899999999999999999
Q ss_pred HHcCCCCCCCceEEEEee
Q 009552 366 ELNDEGNWRSGLRVRLML 383 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~ 383 (532)
. ++..++++.|+|.+..
T Consensus 77 ~-~~~~~~g~~l~V~~a~ 93 (105)
T 2dh8_A 77 S-RPHTLDGRNIDPKPCT 93 (105)
T ss_dssp H-CSEEETTEEEBCCCSC
T ss_pred h-CCCeECCEEEEEEEcc
Confidence 7 8777777666655543
No 115
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.50 E-value=4.9e-14 Score=130.66 Aligned_cols=85 Identities=22% Similarity=0.305 Sum_probs=72.7
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
...++|||+|||.++|+++|+++|+.||.|..|+|+.+..+ + ..+|||||+|++.++|++||+
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~----------g-------~~~g~afV~f~~~~~A~~Ai~ 132 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRT----------G-------FSKGYALVEYETHKQALAAKE 132 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT----------S-------SEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCC----------C-------cEeeEEEEEECCHHHHHHHHH
Confidence 45689999999999999999999999999999999865421 1 137899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeecCC
Q 009552 366 ELNDEGNWRSGLRVRLMLRRGS 387 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~k~~~ 387 (532)
.||+..++++.|+|.+...+..
T Consensus 133 ~l~g~~~~g~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 133 ALNGAEIMGQTIQVDWCFVKGP 154 (165)
T ss_dssp HHTTCEETTEECEEEESEECC-
T ss_pred HhCCCEECCEEEEEEEecCCCC
Confidence 9999999998899988766443
No 116
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.50 E-value=1.9e-14 Score=122.00 Aligned_cols=73 Identities=19% Similarity=0.249 Sum_probs=64.2
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
..++|||+|||.++++++|+++|+.||.|..|+|.+ .||||||+|++.++|++|++.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~-----------------------~~g~afV~f~~~~~A~~Ai~~ 82 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP-----------------------EKGCCFIKYDTHEQAAVCIVA 82 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET-----------------------TTTEEEEECSSHHHHHHHHHH
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec-----------------------CCCEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999999999852 278999999999999999999
Q ss_pred HcCCCCCCCceEEEEe
Q 009552 367 LNDEGNWRSGLRVRLM 382 (532)
Q Consensus 367 Ln~~~~~~~glrV~l~ 382 (532)
||+..+.++.|+|.+.
T Consensus 83 l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 83 LANFPFQGRNLRTGWG 98 (101)
T ss_dssp HTTCEETTEECCCCBC
T ss_pred hCCCeECCeEEEEEec
Confidence 9998877766665543
No 117
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.50 E-value=2.2e-14 Score=125.92 Aligned_cols=76 Identities=18% Similarity=0.112 Sum_probs=66.8
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcC-CeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG-~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
..++|||+|||+++|+++|+++|+.|| +|..|+|... .++|||||+|++.|+|++||+
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~---------------------~~rGfaFV~F~~~e~A~~Ai~ 85 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR---------------------DFDGTGALEFPSEEILVEALE 85 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC---------------------SSSCCEEEEESSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC---------------------CCCCEEEEEECCHHHHHHHHH
Confidence 457999999999999999999999999 9999998421 127899999999999999999
Q ss_pred HHcCCCCCCCceEEEEee
Q 009552 366 ELNDEGNWRSGLRVRLML 383 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~ 383 (532)
.||+..+.++.|+|.+..
T Consensus 86 ~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 86 RLNNIEFRGSVITVERDD 103 (111)
T ss_dssp HTTTEEETTEEEEEEESC
T ss_pred HcCCCEECCeEEEEEECC
Confidence 999998888888887764
No 118
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=2.8e-14 Score=119.25 Aligned_cols=74 Identities=18% Similarity=0.132 Sum_probs=64.8
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCC-eeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGS-VKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~-V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
..++|||+|||.++|+++|+++|+.||. |..+.++ .+|||||+|++.++|++|++
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------------------------~~g~afV~f~~~~~A~~A~~ 62 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------------------------KSGYAFVDYPDQNWAIRAIE 62 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------------------------ETTEEEECCSCHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------------------------CCCEEEEEECCHHHHHHHHH
Confidence 5689999999999999999999999999 6666552 26799999999999999999
Q ss_pred HHcC-CCCCCCceEEEEeee
Q 009552 366 ELND-EGNWRSGLRVRLMLR 384 (532)
Q Consensus 366 ~Ln~-~~~~~~glrV~l~~k 384 (532)
.||+ ..++++.|+|.+...
T Consensus 63 ~l~g~~~~~g~~l~v~~a~~ 82 (93)
T 2cqh_A 63 TLSGKVELHGKIMEVDYSVS 82 (93)
T ss_dssp HHTTTCEETTEECEEEECCC
T ss_pred HccCCeeECCEEEEEEEccC
Confidence 9999 888888888887654
No 119
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.50 E-value=2.1e-14 Score=122.23 Aligned_cols=82 Identities=18% Similarity=0.274 Sum_probs=67.1
Q ss_pred hccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHH
Q 009552 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (532)
Q Consensus 285 ~~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv 364 (532)
....++|||+|||.++++++|+++|+.|| |..|+|.++... ++ ..+|||||+|++.++|++||
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~---------~g-------~~~g~afV~f~~~~~a~~Ai 78 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSN---------PE-------RLKGFGYAEFEDLDSLLSAL 78 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTT---------TC-------CCCSCEEEEECCHHHHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCc---------CC-------ccCeEEEEEECCHHHHHHHH
Confidence 34678999999999999999999999999 999999765310 11 13789999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeee
Q 009552 365 AELNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 365 ~~Ln~~~~~~~glrV~l~~k 384 (532)
.|++..+.++.|+|.+...
T Consensus 79 -~l~g~~~~g~~l~V~~a~~ 97 (100)
T 2j76_E 79 -SLNEESLGNRRIRVDVADQ 97 (100)
T ss_dssp -HTTTCCBTTBCCCCEECCC
T ss_pred -hcCCCEECCeEEEEEeccC
Confidence 8999999888888887643
No 120
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.50 E-value=3e-14 Score=127.07 Aligned_cols=79 Identities=27% Similarity=0.371 Sum_probs=68.1
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
...++|||+|||.++|+++|+++|+.||.|..|+|.+++.+ + ..+|||||+|++.++|++|++
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~----------~-------~~~g~afV~f~~~~~a~~A~~ 123 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYET----------E-------KHRGFAFVEFELAEDAAAAID 123 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTT----------C-------CCCSEEEEEESCHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCC----------C-------CcCcEEEEEECCHHHHHHHHH
Confidence 35789999999999999999999999999999999765321 1 137899999999999999999
Q ss_pred HHcCCCCCCCceEEEE
Q 009552 366 ELNDEGNWRSGLRVRL 381 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l 381 (532)
.||+..++++.|+|.+
T Consensus 124 ~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 124 NMNESELFGRTIRVNL 139 (140)
T ss_dssp HSTEEEETTEEEEEEC
T ss_pred HhCCCEECCEEEEEEe
Confidence 9999888877777764
No 121
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.50 E-value=9.3e-14 Score=120.51 Aligned_cols=78 Identities=24% Similarity=0.285 Sum_probs=69.8
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
..++|||+|||.++|+++|+++|+.||.|..|+|.++. ..+|||||+|++.++|++|++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~--------------------~~~g~afV~f~~~~~A~~A~~~ 66 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP--------------------ETRGTAYVVYEDIFDAKNAVDH 66 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST--------------------TTTTCEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC--------------------CCCcEEEEEECCHHHHHHHHHH
Confidence 46899999999999999999999999999999997542 1278999999999999999999
Q ss_pred HcCCCCCCCceEEEEeee
Q 009552 367 LNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 367 Ln~~~~~~~glrV~l~~k 384 (532)
||+..+.++.|+|.+...
T Consensus 67 l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 67 LSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp HTTCBSSSCBCEEEECCH
T ss_pred cCCCEECCeEEEEEEecC
Confidence 999999999899988753
No 122
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=5.5e-14 Score=119.61 Aligned_cols=79 Identities=18% Similarity=0.166 Sum_probs=64.0
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
...++|||+|||.++++++|+++|+.||.|..|+|+++..+ + .++|||||+|++.++|++||+
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~----------g-------~~~g~afV~f~~~~~a~~A~~ 75 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKT----------G-------HSKGFGFVRFTEYETQVKVMS 75 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSS----------C-------SEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCC----------C-------CccceEEEEECCHHHHHHHHH
Confidence 35689999999999999999999999999999999876421 1 238899999999999999998
Q ss_pred HHcCCCCCCCceEEEEee
Q 009552 366 ELNDEGNWRSGLRVRLML 383 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~ 383 (532)
. +..+.++.|+|.+..
T Consensus 76 ~--~~~~~g~~l~v~~a~ 91 (103)
T 2cqg_A 76 Q--RHMIDGRWCDCKLPN 91 (103)
T ss_dssp S--CEEETTEEEEEECCC
T ss_pred c--CCeeCCeEEEEEecC
Confidence 4 334555556666554
No 123
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.50 E-value=3.1e-14 Score=123.47 Aligned_cols=76 Identities=29% Similarity=0.358 Sum_probs=67.3
Q ss_pred hhccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHH
Q 009552 284 EELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (532)
Q Consensus 284 ~~~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekA 363 (532)
.+...++|||+|||.++|+++|+++|+.||.|..|+|+ +|||||+|++.++|++|
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------------------------kg~afV~f~~~~~A~~A 81 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------------------------NGFAFVEFEEAESAAKA 81 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------------------------TTEEEEECSSHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------------------------CCEEEEEECCHHHHHHH
Confidence 34567899999999999999999999999999999984 56999999999999999
Q ss_pred HHHHcCCCCCCCceEEEEeee
Q 009552 364 IAELNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 364 v~~Ln~~~~~~~glrV~l~~k 384 (532)
++.||+..+.++.|+|.+...
T Consensus 82 i~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 82 IEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp HHHHTTCEETTEECEEESCSC
T ss_pred HHHcCCCEECCeEEEEEEecC
Confidence 999999988887777776543
No 124
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=7.4e-14 Score=118.15 Aligned_cols=72 Identities=25% Similarity=0.295 Sum_probs=64.6
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhc--CCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAV--GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~f--G~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv 364 (532)
..++|||+|||.++|+++|+++|+.| |.|..|++. ++||||+|++.++|++|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------------------------~g~afV~f~~~~~A~~A~ 68 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------------------------RDYAFVHFSNREDAVEAM 68 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------------------------SSEEEEEESSHHHHHHHH
T ss_pred CcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------------------------CCeEEEEeCCHHHHHHHH
Confidence 56899999999999999999999999 999998873 569999999999999999
Q ss_pred HHHcCCCCCCCceEEEEee
Q 009552 365 AELNDEGNWRSGLRVRLML 383 (532)
Q Consensus 365 ~~Ln~~~~~~~glrV~l~~ 383 (532)
+.||+..+.++.|+|.+..
T Consensus 69 ~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 69 KALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp HHHSSEEETTEEEEEECCC
T ss_pred HHhCCCEeCCcEEEEEECC
Confidence 9999998887777777654
No 125
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=5.9e-14 Score=120.40 Aligned_cols=78 Identities=21% Similarity=0.263 Sum_probs=66.7
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeE-EEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKT-IRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~-Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
..++|||+|||+++|+++|+++|+.||.|.. |+|+++. +++ .+|||||+|++.++|++||+
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~-----------~g~-------~~G~afV~F~~~~~a~~A~~ 75 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDF-----------QGR-------STGEAFVQFASQEIAEKALK 75 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCS-----------SSC-------BCSEEEEEESSHHHHHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECC-----------CCC-------cceEEEEEECCHHHHHHHHH
Confidence 5689999999999999999999999999987 8886542 122 37899999999999999999
Q ss_pred HHcCCCCCCCceEEEEee
Q 009552 366 ELNDEGNWRSGLRVRLML 383 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~ 383 (532)
. ++..+.++.|+|....
T Consensus 76 ~-~~~~~~gr~i~v~~~~ 92 (104)
T 1wg5_A 76 K-HKERIGHRYIEIFKSS 92 (104)
T ss_dssp T-TTCCSSSSCCEEEEEC
T ss_pred h-CcchhCCcEEEEEECC
Confidence 7 8888888888887654
No 126
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.49 E-value=1.4e-14 Score=122.83 Aligned_cols=81 Identities=17% Similarity=0.194 Sum_probs=66.9
Q ss_pred hccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHH
Q 009552 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (532)
Q Consensus 285 ~~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv 364 (532)
....++|||+|||.++|+++|+++|+.||.|.. .++.+. ..+ .++|||||+|++.++|++||
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~----------~~g-------~~~g~afV~f~~~~~a~~A~ 75 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDV----------RTG-------TNRKFGYVDFESAEDLEKAL 75 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEE----------EEE-------TTTTEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecC----------CCC-------CcCcEEEEEECCHHHHHHHH
Confidence 345789999999999999999999999999877 443332 111 24889999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeee
Q 009552 365 AELNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 365 ~~Ln~~~~~~~glrV~l~~k 384 (532)
+ ||+..+.++.|+|.+...
T Consensus 76 ~-l~g~~~~g~~l~V~~a~~ 94 (101)
T 1fj7_A 76 E-LTGLKVFGNEIKLEKPKG 94 (101)
T ss_dssp H-GGGCCBTTBCCEEECCSC
T ss_pred h-cCCcEECCcEEEEEEcCC
Confidence 8 999999988888887654
No 127
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=9.6e-14 Score=120.27 Aligned_cols=79 Identities=15% Similarity=0.227 Sum_probs=67.3
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCe----eEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSV----KTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V----~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~Aek 362 (532)
..++|||+|||.++|+++|+++|+.||.| ..+++.. + ..+|||||+|++.++|++
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~--------------g-------~~~g~afV~f~~~~~a~~ 82 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMT--------------G-------RMRGQAFITFPNKEIAWQ 82 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEEC--------------S-------SSCSEEEEECSSHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCC--------------C-------ccceEEEEEECCHHHHHH
Confidence 56899999999999999999999999999 4555431 1 137899999999999999
Q ss_pred HHHHHcCCCCCCCceEEEEeeecC
Q 009552 363 AIAELNDEGNWRSGLRVRLMLRRG 386 (532)
Q Consensus 363 Av~~Ln~~~~~~~glrV~l~~k~~ 386 (532)
||+.|++..++++.|+|.+...+.
T Consensus 83 Ai~~l~g~~~~g~~l~v~~a~~~~ 106 (115)
T 2cpx_A 83 ALHLVNGYKLYGKILVIEFGKNKK 106 (115)
T ss_dssp HHHHSTTCBCSSCBCEEEECCCCS
T ss_pred HHHHhCCCEeCCcEEEEEEccCCC
Confidence 999999999999999998876543
No 128
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.48 E-value=1e-13 Score=132.98 Aligned_cols=82 Identities=22% Similarity=0.233 Sum_probs=71.4
Q ss_pred hhccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHH
Q 009552 284 EELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (532)
Q Consensus 284 ~~~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekA 363 (532)
.....++|||+|||.++|+++|+++|+.||.|..|+|+++.. .+||||||+|++.++|++|
T Consensus 99 ~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~-------------------~~~g~~fV~f~~~~~a~~A 159 (213)
T 4f02_A 99 RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-------------------GSKGYGFVHFETQEAAERA 159 (213)
T ss_dssp HHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-------------------EEEEEEEEEESSHHHHHHH
T ss_pred cccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCC-------------------CCceEEEEEeCCHHHHHHH
Confidence 344567999999999999999999999999999999986521 1388999999999999999
Q ss_pred HHHHcCCCCCCCceEEEEeee
Q 009552 364 IAELNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 364 v~~Ln~~~~~~~glrV~l~~k 384 (532)
|+.||+..+.++.|+|.++..
T Consensus 160 i~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 160 IEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp HHHHTTCEETTEECEEEECCC
T ss_pred HHHhCCCEECCEEEEEEEcCC
Confidence 999999999888888887654
No 129
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=2.4e-14 Score=124.84 Aligned_cols=80 Identities=9% Similarity=0.081 Sum_probs=68.2
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCe-eEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSV-KTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V-~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv 364 (532)
...++|||+|||+++|+++|+++|+.||.| ..|+|+++. + ++ .||||||+|++.++|++||
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~----------g~-------~~G~afV~F~~~~~a~~Al 74 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-N----------GQ-------GLGQALVQFKNEDDARKSE 74 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-T----------SS-------CSSCEEEECSSHHHHHHHG
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-C----------CC-------cceEEEEEECCHHHHHHHH
Confidence 356899999999999999999999999999 899997653 1 11 3789999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeee
Q 009552 365 AELNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 365 ~~Ln~~~~~~~glrV~l~~k 384 (532)
+. ++..+.++.|+|.++..
T Consensus 75 ~~-~~~~~~gr~i~v~~a~~ 93 (114)
T 2cpy_A 75 RL-HRKKLNGREAFVHVVTL 93 (114)
T ss_dssp GG-CSEEETTEEEEEEEECH
T ss_pred Hh-CCCccCCeEEEEEECCH
Confidence 86 88888887788877654
No 130
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=6.3e-14 Score=116.62 Aligned_cols=79 Identities=16% Similarity=0.133 Sum_probs=68.1
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
...++|||+|||.++|+++|+++|+.| .|..|+|+++. .+ .++|||||+|++.++|++||+
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~-----------~g-------~~~g~afV~f~~~~~a~~A~~ 68 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNA-----------HG-------NKTGYIFVDFSNEEEVKQALK 68 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECT-----------TS-------CEEEEEEEECSSHHHHHHHHH
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECC-----------CC-------CCceEEEEEECCHHHHHHHHH
Confidence 356899999999999999999999999 99999998652 11 137899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeee
Q 009552 366 ELNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~k 384 (532)
||+..+.++.|+|.+...
T Consensus 69 -~~g~~~~gr~i~v~~a~~ 86 (91)
T 2dgw_A 69 -CNREYMGGRYIEVFREKS 86 (91)
T ss_dssp -SCSEEETTEEEEEEEESS
T ss_pred -hCCceeCCcEEEEEECCc
Confidence 999988888888877654
No 131
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.48 E-value=1.1e-13 Score=124.11 Aligned_cols=78 Identities=17% Similarity=0.201 Sum_probs=67.7
Q ss_pred cceeEEEecCCCcCcHHHHH----HHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLM----KIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~----elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~Aek 362 (532)
..++|||+||++++++++|+ ++|++||.|..|+|... ++ .||||||+|++.++|++
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~-------------~~-------~rG~aFV~F~~~~~A~~ 87 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLS-------------DD-------NSGKAYIVFATQESAQA 87 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCC-------------CS-------SCCCEEEEESSHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccC-------------CC-------cCCEEEEEECCHHHHHH
Confidence 46799999999999999876 79999999999988421 11 37899999999999999
Q ss_pred HHHHHcCCCCCCCceEEEEeee
Q 009552 363 AIAELNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 363 Av~~Ln~~~~~~~glrV~l~~k 384 (532)
|++.||+..+.++.|+|.++..
T Consensus 88 Ai~~lng~~l~gr~l~V~~a~~ 109 (127)
T 2a3j_A 88 FVEAFQGYPFQGNPLVITFSET 109 (127)
T ss_dssp HHHHSTTCCCTTSCCEEEECCC
T ss_pred HHHHHCCCEeCCCEEEEEEccC
Confidence 9999999999999999988754
No 132
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.48 E-value=2.5e-14 Score=125.84 Aligned_cols=79 Identities=19% Similarity=0.159 Sum_probs=68.2
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCC---eeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGS---VKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~---V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekA 363 (532)
..++|||+|||+++|+++|+++|+.||. |..|+|+++.. + .+||||||+|++.++|++|
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-----------g-------~~~G~afV~F~~~~~a~~A 77 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-----------G-------RQSGEAFVELESEDDVKLA 77 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-----------S-------CEEEEEEEEBSSHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-----------C-------CCCeEEEEEECCHHHHHHH
Confidence 5689999999999999999999999999 89999987532 1 2388999999999999999
Q ss_pred HHHHcCCCCCCCceEEEEeee
Q 009552 364 IAELNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 364 v~~Ln~~~~~~~glrV~l~~k 384 (532)
|+ |++..+.++.|+|.+...
T Consensus 78 l~-~~g~~~~gr~i~V~~a~~ 97 (118)
T 2db1_A 78 LK-KDRESMGHRYIEVFKSHR 97 (118)
T ss_dssp GG-GTTEEETTEEEEEEEECH
T ss_pred Hh-cCCCeECCeEEEEEECCH
Confidence 99 998888888777776643
No 133
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.47 E-value=8.5e-14 Score=120.13 Aligned_cols=72 Identities=24% Similarity=0.175 Sum_probs=65.7
Q ss_pred cceeEEEecCCCc-CcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 287 QSRIVVAENLPED-HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 287 ~~rtVyV~nLP~d-~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
..++|||+|||.+ +|+++|+++|++||.|..|+|. ++||||+|++.++|++||+
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~-------------------------~g~afV~f~~~~~A~~A~~ 80 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVH-------------------------KGYAFVQYSNERHARAAVL 80 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEEE-------------------------TTEEEEECSSSHHHHHHHH
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEe-------------------------CCEEEEEECCHHHHHHHHH
Confidence 4589999999999 9999999999999999999881 6799999999999999999
Q ss_pred HHcCCCCCCCceEEEEee
Q 009552 366 ELNDEGNWRSGLRVRLML 383 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~ 383 (532)
.|++..++++.|+|.+..
T Consensus 81 ~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 81 GENGRVLAGQTLDINMAG 98 (110)
T ss_dssp HHTTCEETTEECCEEESC
T ss_pred HcCCCEECCeEEEEEECC
Confidence 999998888888887764
No 134
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.21 E-value=3.6e-15 Score=129.97 Aligned_cols=84 Identities=19% Similarity=0.255 Sum_probs=70.9
Q ss_pred hccceeEEEecCCCcCcHHHHHHHhhhcCCeeE--------EEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCC
Q 009552 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKT--------IRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES 356 (532)
Q Consensus 285 ~~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~--------Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet 356 (532)
+...++|||+|||.++++++|+++|+.||.|.. |+|.+++.+ + ..+|||||+|++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~----------g-------~~~g~afV~f~~ 66 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRET----------G-------KLKGEATVSFDD 66 (116)
Confidence 346789999999999999999999999999998 888655321 1 137899999999
Q ss_pred HHHHHHHHHHHcCCCCCCCceEEEEeeec
Q 009552 357 VELAEKAIAELNDEGNWRSGLRVRLMLRR 385 (532)
Q Consensus 357 ~E~AekAv~~Ln~~~~~~~glrV~l~~k~ 385 (532)
.++|++||+.||+..+.++.|+|.+...+
T Consensus 67 ~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (116)
T 2lcw_A 67 PPSAKAAIDWFDGKEFSGNPIKVSFATRR 95 (116)
Confidence 99999999999999888888888876543
No 135
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.46 E-value=4.1e-14 Score=113.23 Aligned_cols=74 Identities=14% Similarity=0.239 Sum_probs=63.1
Q ss_pred eEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHHcC
Q 009552 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (532)
Q Consensus 290 tVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~Ln~ 369 (532)
+|||+|||.++|+++|+++|+.||.|..|+|.++..+ + .++|||||+|++.++|++|++ +++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~----------~-------~~~g~afV~f~~~~~a~~Ai~-~~~ 62 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKT----------N-------KRRGFCFITFKEEEPVKKIME-KKY 62 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCC----------S-------SSCCCEEEECSSSHHHHHHHT-TSS
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC----------C-------CcCCEEEEEECCHHHHHHHHH-hCC
Confidence 6999999999999999999999999999998765321 1 237899999999999999998 477
Q ss_pred CCCCCCceEEEE
Q 009552 370 EGNWRSGLRVRL 381 (532)
Q Consensus 370 ~~~~~~glrV~l 381 (532)
..+.++.|+|++
T Consensus 63 ~~~~g~~l~v~~ 74 (75)
T 1iqt_A 63 HNVGLSKCEIKV 74 (75)
T ss_dssp CCBTTBCCCEEE
T ss_pred CeECCEEEEEEE
Confidence 778888887765
No 136
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.46 E-value=6e-14 Score=120.53 Aligned_cols=78 Identities=23% Similarity=0.261 Sum_probs=67.4
Q ss_pred cceeEEEecCCCcC------cHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHH
Q 009552 287 QSRIVVAENLPEDH------CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELA 360 (532)
Q Consensus 287 ~~rtVyV~nLP~d~------t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~A 360 (532)
..++|||+|||.++ |+++|+++|++||.|..|+|.+ . ++ .++|||||+|++.++|
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~----------~g-------~~~G~afV~f~~~~~A 74 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--E----------DG-------KTKGYIFLEYASPAHA 74 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--B----------TT-------BSCCEEEEEECSSSHH
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--C----------CC-------CeeeEEEEEECCHHHH
Confidence 46899999999999 7899999999999999999852 1 11 2378999999999999
Q ss_pred HHHHHHHcCCCCCCC-ceEEEEee
Q 009552 361 EKAIAELNDEGNWRS-GLRVRLML 383 (532)
Q Consensus 361 ekAv~~Ln~~~~~~~-glrV~l~~ 383 (532)
++||+.||+..++++ .|+|.++.
T Consensus 75 ~~Ai~~l~g~~~~g~~~l~V~~a~ 98 (105)
T 2nlw_A 75 VDAVKNADGYKLDKQHTFRVNLFT 98 (105)
T ss_dssp HHHHHHCSSEECSTTCEEEEECSC
T ss_pred HHHHHHhCCcccCCCceEEEEEcc
Confidence 999999999998887 88888764
No 137
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.46 E-value=2.1e-13 Score=124.47 Aligned_cols=79 Identities=16% Similarity=0.301 Sum_probs=67.9
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
...++|||+|||.++|+++|+++|+.||.|..|+|.++.+ + .++|||||+|++.++|++|++
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~-----------g-------~~~g~afV~f~~~~~A~~A~~ 154 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-----------G-------LSRGCAFVTFTTRAMAQTAIK 154 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-----------S-------CEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCC-----------C-------CEEEEEEEEECCHHHHHHHHH
Confidence 3578999999999999999999999999999999976521 1 237899999999999999999
Q ss_pred HHcCCCCCC---CceEEEEe
Q 009552 366 ELNDEGNWR---SGLRVRLM 382 (532)
Q Consensus 366 ~Ln~~~~~~---~glrV~l~ 382 (532)
.||+..++. +.|+|.++
T Consensus 155 ~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 155 AMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp HHTTSCCCTTCSSCCEEEEC
T ss_pred HhcCCcccCCCCCCeEEEec
Confidence 999977764 67888765
No 138
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.46 E-value=1.8e-13 Score=127.64 Aligned_cols=83 Identities=18% Similarity=0.274 Sum_probs=67.8
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
...++|||+|||.++|+++|+++|+.||.|..|+|+++..+ + .++|||||+|++.++|++||+
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~----------g-------~~~g~afV~F~~~~~A~~A~~ 164 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGS----------G-------KKRGFAFVTFDDHDSVDKIVI 164 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTT----------C-------CEEEEEEEEESSHHHHHHHHH
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCC----------C-------CccceEEEEECCHHHHHHHHH
Confidence 35689999999999999999999999999999999876421 1 238899999999999999998
Q ss_pred HHcCCCCCCCceEEEEeeecC
Q 009552 366 ELNDEGNWRSGLRVRLMLRRG 386 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~k~~ 386 (532)
. ++..+.++.|+|.++..+.
T Consensus 165 ~-~~~~~~G~~i~v~~a~~k~ 184 (196)
T 1l3k_A 165 Q-KYHTVNGHNCEVRKALSKQ 184 (196)
T ss_dssp C-SCCEETTEECEEEECC---
T ss_pred h-CCcEECCEEEEEEecCChh
Confidence 5 6777778888888776543
No 139
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=2e-13 Score=114.48 Aligned_cols=78 Identities=19% Similarity=0.176 Sum_probs=68.0
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEE-EeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIR-TCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vr-i~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
..++|||+|||.++|+++|+++|+.||.|..|+ |+.++. .+.|||+|++.++|++|++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~---------------------~~~afV~f~~~~~a~~Ai~ 72 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE---------------------TAVVNVTYSSKDQARQALD 72 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS---------------------SEEEEEEESSHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC---------------------CCEEEEEECCHHHHHHHHH
Confidence 468999999999999999999999999999996 654321 2349999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeec
Q 009552 366 ELNDEGNWRSGLRVRLMLRR 385 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~k~ 385 (532)
.||+..+.++.|+|.++..+
T Consensus 73 ~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 73 KLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp HHTTCBCSSCBCEEEECCCC
T ss_pred HhCCCEECCcEEEEEEcCcc
Confidence 99999999999999887654
No 140
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.46 E-value=1.1e-13 Score=113.70 Aligned_cols=70 Identities=24% Similarity=0.370 Sum_probs=62.9
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhc----C-------CeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeC
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAV----G-------SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYE 355 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~f----G-------~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFe 355 (532)
..++|||+|||.++|+++|+++|+.| | .|..|+|.++ ||||||+|+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----------------------kg~afV~f~ 61 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----------------------KNFAFLEFR 61 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----------------------SSEEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----------------------CcEEEEEcC
Confidence 57899999999999999999999999 8 8999998532 679999999
Q ss_pred CHHHHHHHHHHHcCCCCCCCceEEE
Q 009552 356 SVELAEKAIAELNDEGNWRSGLRVR 380 (532)
Q Consensus 356 t~E~AekAv~~Ln~~~~~~~glrV~ 380 (532)
+.++|++|+ .||+..++++.|+|.
T Consensus 62 ~~~~a~~A~-~l~g~~~~g~~l~V~ 85 (87)
T 2hzc_A 62 SVDETTQAM-AFDGIIFQGQSLKIR 85 (87)
T ss_dssp SHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CHHHHHHHH-hcCCCEECCeEEEEe
Confidence 999999999 899988888777665
No 141
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.46 E-value=4.6e-14 Score=128.13 Aligned_cols=78 Identities=15% Similarity=0.106 Sum_probs=68.2
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCC---eeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGS---VKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~---V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekA 363 (532)
..++|||+|||+++|+++|+++|+.||. |..|+|++++. + .+||||||+|++.++|++|
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-----------g-------~srG~aFV~F~~~e~a~~A 104 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-----------G-------RQSGEAFVELGSEDDVKMA 104 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-----------S-------CEEEEEEEECSSHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-----------C-------CCCeEEEEEECCHHHHHHH
Confidence 5689999999999999999999999999 89999987642 2 2388999999999999999
Q ss_pred HHHHcCCCCCCCceEEEEee
Q 009552 364 IAELNDEGNWRSGLRVRLML 383 (532)
Q Consensus 364 v~~Ln~~~~~~~glrV~l~~ 383 (532)
|+ ||+..+.++.|+|.+..
T Consensus 105 l~-~~g~~l~gr~i~V~~a~ 123 (136)
T 2hgl_A 105 LK-KDRESMGHRYIEVFKSH 123 (136)
T ss_dssp HT-TTEEESSSSEEEEEECC
T ss_pred Hh-cCCCEECCEEEEEEECC
Confidence 99 99988888888877654
No 142
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.45 E-value=3.4e-14 Score=129.50 Aligned_cols=79 Identities=15% Similarity=0.131 Sum_probs=67.0
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
...++|||+|||+++|+++|+++|+.|| |..|+|++++. ++ +||||||+|++.++|++||
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-----------g~-------srGfaFV~F~~~e~A~~Al- 103 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-----------GR-------VTGEADVEFATHEEAVAAM- 103 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-----------SC-------SSCCCEEECSHHHHHHHHT-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-----------CC-------CceEEEEEeCCHHHHHHHH-
Confidence 3568999999999999999999999999 77999876532 22 3789999999999999999
Q ss_pred HHcCCCCCCCceEEEEeee
Q 009552 366 ELNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~k 384 (532)
.+|+..+.++.|+|.+...
T Consensus 104 ~~~g~~l~gR~i~V~~a~~ 122 (139)
T 2hgn_A 104 SKDRANMQHRYIELFLNST 122 (139)
T ss_dssp TCCSCSSSSCCCCCEECCC
T ss_pred hhCCCEECCEEEEEEECCC
Confidence 6899888888888876654
No 143
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=1.2e-13 Score=117.14 Aligned_cols=78 Identities=23% Similarity=0.259 Sum_probs=64.4
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
...++|||+|||.++|+++|+++|++||.| +|+++. .+ ..+|||||+|++.++|++||+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~-----------~g-------~~~g~afV~f~~~~~A~~A~~ 71 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQ-----------NG-------KSKGYAFIEFASFEDAKEALN 71 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCS-----------SS-------CBCSEEEEECSSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECC-----------CC-------CEeeEEEEEECCHHHHHHHHH
Confidence 357899999999999999999999999987 443321 11 137899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeee
Q 009552 366 ELNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~k 384 (532)
.|++..+.++.|+|.+...
T Consensus 72 ~l~g~~~~g~~l~v~~a~~ 90 (101)
T 2fc9_A 72 SCNKREIEGRAIRLELQGP 90 (101)
T ss_dssp HTSSEEETTEEEEEEECSS
T ss_pred HhCCCEeCCeEEEEEEcCC
Confidence 9999888887777777644
No 144
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.45 E-value=5.2e-14 Score=121.34 Aligned_cols=80 Identities=19% Similarity=0.150 Sum_probs=68.7
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCC---eeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGS---VKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~---V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~Aek 362 (532)
...++|||+|||+++|+++|+++|+.||. |..|+|+++.. ++ .+|||||+|++.++|++
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-----------g~-------~~G~afV~F~~~~~a~~ 70 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-----------GK-------RRGDALIEMESEQDVQK 70 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-----------ST-------TCSEEEEEBSSHHHHHH
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-----------CC-------EeeEEEEEECCHHHHHH
Confidence 35689999999999999999999999998 89999976532 22 37899999999999999
Q ss_pred HHHHHcCCCCCCCceEEEEeee
Q 009552 363 AIAELNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 363 Av~~Ln~~~~~~~glrV~l~~k 384 (532)
||+ |++..+.++.|+|.....
T Consensus 71 Al~-~~~~~~~gr~i~V~~a~~ 91 (107)
T 2lmi_A 71 ALE-KHRMYMGQRYVEVYEINN 91 (107)
T ss_dssp HHT-TTTCCSSSSCCCCEECCH
T ss_pred HHH-hCcceeCCeEEEEEECCH
Confidence 999 999888888888877643
No 145
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.45 E-value=1.2e-13 Score=115.99 Aligned_cols=79 Identities=23% Similarity=0.277 Sum_probs=68.0
Q ss_pred ccceeEEEecCCCcCcHHHHH----HHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLM----KIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAE 361 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~----elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~Ae 361 (532)
...++|||+|||.++++++|+ ++|+.||.|..|+|.+ +++ .+|||||+|++.++|+
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~-------------~~~-------~~g~afV~f~~~~~A~ 65 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR-------------SLK-------MRGQAFVIFKEVSSAT 65 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH-------------HHH-------HTTCEEEEESSHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc-------------CCC-------cCcEEEEEeCCHHHHH
Confidence 356899999999999999999 9999999999998842 111 3789999999999999
Q ss_pred HHHHHHcCCCCCCCceEEEEeee
Q 009552 362 KAIAELNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 362 kAv~~Ln~~~~~~~glrV~l~~k 384 (532)
+|++.|++..++++.|+|.+...
T Consensus 66 ~A~~~l~g~~~~g~~l~v~~a~~ 88 (97)
T 1nu4_A 66 NALRSMQGFPFYDKPMRIQYAKT 88 (97)
T ss_dssp HHHHHHTTCEETTEECEEEECSS
T ss_pred HHHHHhCCCEECCcEEEEEEccC
Confidence 99999999988888888877654
No 146
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.45 E-value=5.8e-13 Score=120.94 Aligned_cols=79 Identities=28% Similarity=0.318 Sum_probs=68.0
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
...++|||+|||.++++++|+++|+.||.|..|+|.++... + .++|||||+|++.++|++|++
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~----------~-------~~~g~afV~f~~~~~A~~A~~ 149 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLT----------G-------RPRGVAFVRYNKREEAQEAIS 149 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTT----------C-------CEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCC----------C-------CcceEEEEEECCHHHHHHHHH
Confidence 45689999999999999999999999999999999865321 1 137899999999999999999
Q ss_pred HHcCCCCCC--CceEEEE
Q 009552 366 ELNDEGNWR--SGLRVRL 381 (532)
Q Consensus 366 ~Ln~~~~~~--~glrV~l 381 (532)
.||+..+.+ +.|+|.+
T Consensus 150 ~l~g~~~~g~~~~l~V~~ 167 (168)
T 1b7f_A 150 ALNNVIPEGGSQPLSVRL 167 (168)
T ss_dssp HHTTCCCTTCSSCCEEEE
T ss_pred HhcCCEecCCCeEEEEEe
Confidence 999998876 6677765
No 147
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=3.5e-14 Score=125.43 Aligned_cols=80 Identities=13% Similarity=0.112 Sum_probs=67.2
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
..++|||+|||+++|+++|+++|+.||.|..+.++.+.. ++ ..+|||||+|++.++|++||+
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~----------~g-------~~~G~afV~F~~~~~a~~Al~- 85 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGP----------NG-------KATGEGFVEFRNEADYKAALC- 85 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECT----------TS-------SEEEEEEEEBSSSHHHHHHHT-
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECC----------CC-------CCCeEEEEEECCHHHHHHHHH-
Confidence 568999999999999999999999999998744433221 11 238899999999999999999
Q ss_pred HcCCCCCCCceEEEEeee
Q 009552 367 LNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 367 Ln~~~~~~~glrV~l~~k 384 (532)
||+..+.++.|+|.++..
T Consensus 86 ~~g~~~~gr~i~V~~a~~ 103 (124)
T 1wel_A 86 RHKQYMGNRFIQVHPITK 103 (124)
T ss_dssp SCSBCSTTSCBEEEEECH
T ss_pred hCCCeECCcEEEEEECCH
Confidence 999999999999988754
No 148
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=1e-13 Score=121.08 Aligned_cols=77 Identities=13% Similarity=0.134 Sum_probs=65.0
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
..++|||+|||+++|+++|+++|+.| .|..|+|++++. ++ .+|||||+|++.++|++|| .
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-----------g~-------~~G~afV~F~~~~~a~~Al-~ 74 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-----------GR-------NNGNGLVKFLSPQDTFEAL-K 74 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-----------CC-------CCSEEEEECSSHHHHHHHH-H
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-----------CC-------CCeEEEEEECCHHHHHHHH-h
Confidence 35799999999999999999999999 899999986532 22 3789999999999999999 5
Q ss_pred HcCCCCCCCceEEEEee
Q 009552 367 LNDEGNWRSGLRVRLML 383 (532)
Q Consensus 367 Ln~~~~~~~glrV~l~~ 383 (532)
||+..+.++.|+|....
T Consensus 75 ~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 75 RNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp TTTEEETTEEEEEEECC
T ss_pred cCCCeECCeEEEEEECC
Confidence 89888877777765543
No 149
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.44 E-value=2.1e-13 Score=130.86 Aligned_cols=80 Identities=20% Similarity=0.228 Sum_probs=69.2
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
..+||||+|||.++|+++|+++|++||+|.+|+|+++..++ .++|||||+|++.++|++||+.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg-----------------~~~G~afV~F~~~~~A~~Ai~~ 76 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITR-----------------RSLGYAYVNFQQPADAERALDT 76 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTC-----------------CEEEEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCC-----------------CccccccceeCCHHHHHHHHHH
Confidence 56899999999999999999999999999999998764321 2378999999999999999999
Q ss_pred HcCCCCCCCceEEEEee
Q 009552 367 LNDEGNWRSGLRVRLML 383 (532)
Q Consensus 367 Ln~~~~~~~glrV~l~~ 383 (532)
|++..+.++.|+|....
T Consensus 77 ~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 77 MNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp HTTCEETTEECEEEECC
T ss_pred hhhhhcCCccccccccc
Confidence 99988888777776654
No 150
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.44 E-value=2.5e-13 Score=128.07 Aligned_cols=80 Identities=16% Similarity=0.165 Sum_probs=71.2
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
..++|||+|||.++++++|+++|+.||.|+.|+|+++. +++ .+|||||+|++.++|++||+.
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-----------~g~-------~kG~afV~F~~~~~A~~Ai~~ 148 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-----------SGR-------SLGTADVHFERRADALKAMKQ 148 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-----------TSS-------CSCCEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-----------CCC-------EeeEEEEEeCCHHHHHHHHHH
Confidence 46899999999999999999999999999999997653 111 378999999999999999999
Q ss_pred HcCCCCCCCceEEEEeee
Q 009552 367 LNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 367 Ln~~~~~~~glrV~l~~k 384 (532)
||+..+.++.|+|.++..
T Consensus 149 lng~~l~Gr~l~V~~a~~ 166 (177)
T 2f3j_A 149 YKGVPLDGRPMDIQLVAS 166 (177)
T ss_dssp STTCBCSSSBCEEEEESS
T ss_pred hCCCEECCEEEEEEEecC
Confidence 999999999999998764
No 151
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.44 E-value=1e-13 Score=116.30 Aligned_cols=78 Identities=18% Similarity=0.207 Sum_probs=65.2
Q ss_pred hccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHH
Q 009552 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (532)
Q Consensus 285 ~~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv 364 (532)
+...++|||+|||.++|+++|+++|+.||.|..| . . .+ ..+|||||+|++.++|++|+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~-~-------------~~-------~~~g~afV~f~~~~~a~~A~ 70 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-S-Q-------------DG-------KSKGIAYIEFKSEADAEKNL 70 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-E-E-------------TT-------EEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-C-C-------------CC-------CcceEEEEEECCHHHHHHHH
Confidence 3467899999999999999999999999988776 1 1 11 13789999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeee
Q 009552 365 AELNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 365 ~~Ln~~~~~~~glrV~l~~k 384 (532)
+.|++..+.++.|+|.+...
T Consensus 71 ~~l~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 71 EEKQGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp HHTTEEEETTEEEEEEECSS
T ss_pred HHhCCCEECCeEEEEEEcCC
Confidence 99999888887777776643
No 152
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=2e-13 Score=115.79 Aligned_cols=79 Identities=20% Similarity=0.221 Sum_probs=64.8
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
...++|||+|||.++|+++|+++|+.|+ .|+|+.+..+ + ..+|||||+|++.++|++||+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~----------~-------~~~g~afV~f~~~~~A~~A~~ 72 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRET----------G-------SSKGFGFVDFNSEEDAKAAKE 72 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSS----------C-------SEEEEEEEECSSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCC----------C-------CcCcEEEEEECCHHHHHHHHH
Confidence 4678999999999999999999999885 4555544321 1 237899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeee
Q 009552 366 ELNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~k 384 (532)
.||+..++++.|+|.+...
T Consensus 73 ~l~g~~~~g~~l~V~~a~~ 91 (102)
T 2fc8_A 73 AMEDGEIDGNKVTLDWAKP 91 (102)
T ss_dssp HHTTCEETTEECEEEECCC
T ss_pred HhCCCeECCeEEEEEEecC
Confidence 9999998888888887654
No 153
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.44 E-value=9.7e-13 Score=118.88 Aligned_cols=78 Identities=21% Similarity=0.303 Sum_probs=66.3
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
...++|||+|||.++++++|+++|+.||.|..|+|.++..+ + .++|||||+|++.++|++|++
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~----------g-------~~~g~afV~f~~~~~A~~A~~ 148 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVT----------G-------VSRGVGFIRFDKRIEAEEAIK 148 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT----------C-------CEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCC----------C-------CccceEEEEeCCHHHHHHHHH
Confidence 45689999999999999999999999999999999765321 1 137899999999999999999
Q ss_pred HHcCCCCCCCceEEE
Q 009552 366 ELNDEGNWRSGLRVR 380 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~ 380 (532)
.||+..+.++.+.|.
T Consensus 149 ~l~g~~~~g~~~~i~ 163 (167)
T 1fxl_A 149 GLNGQKPSGATEPIT 163 (167)
T ss_dssp HHTTCCCTTCSSCCE
T ss_pred HhcCCccCCCccceE
Confidence 999998888764333
No 154
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.44 E-value=3.9e-13 Score=122.76 Aligned_cols=79 Identities=20% Similarity=0.267 Sum_probs=69.1
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
..++|||+|||.++|+++|+++|+.||.|..|+|.++..+ + .++|||||+|++.++|++|++.
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~----------g-------~~~g~afV~f~~~~~A~~A~~~ 155 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSAT----------G-------LSKGYAFCEYVDINVTDQAIAG 155 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTT----------C-------SEEEEEEEEESSTTHHHHHHHH
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCC----------C-------CcceEEEEEeCCHHHHHHHHHH
Confidence 4689999999999999999999999999999999865321 1 2378999999999999999999
Q ss_pred HcCCCCCCCceEEEEe
Q 009552 367 LNDEGNWRSGLRVRLM 382 (532)
Q Consensus 367 Ln~~~~~~~glrV~l~ 382 (532)
||+..++++.|+|.++
T Consensus 156 l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 156 LNGMQLGDKKLLVQRA 171 (172)
T ss_dssp HTTCEETTEECEEEEC
T ss_pred cCCCEECCeEEEEEeC
Confidence 9999988888888764
No 155
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.43 E-value=2.1e-13 Score=135.24 Aligned_cols=75 Identities=21% Similarity=0.259 Sum_probs=66.7
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
..++|||+|||.++|+++|+++|+.||.|+.|+|..++ +|||||+|++.++|++|++.
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~----------------------~g~afV~f~~~~~A~~A~~~ 263 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR----------------------HDIAFVEFDNEVQAGAARDA 263 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC----------------------CcEEEEEeCCHHHHHHHHHH
Confidence 46889999999999999999999999999999996421 57999999999999999999
Q ss_pred HcCCCCC-CCceEEEEee
Q 009552 367 LNDEGNW-RSGLRVRLML 383 (532)
Q Consensus 367 Ln~~~~~-~~glrV~l~~ 383 (532)
||+..++ ++.|+|.+..
T Consensus 264 l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 264 LQGFKITQNNAMKISFAK 281 (282)
T ss_pred cCCcEeCCCCEEEEEEec
Confidence 9998888 7778887653
No 156
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.43 E-value=1.2e-13 Score=117.20 Aligned_cols=81 Identities=15% Similarity=0.208 Sum_probs=67.7
Q ss_pred hccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHH
Q 009552 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (532)
Q Consensus 285 ~~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv 364 (532)
+...++|||+|||.++|+++|+++|+.||.|..|+|.++. + + ..+|||||+|++.++|++|+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~----------g-------~~~g~afV~f~~~~~a~~Ai 67 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-T----------G-------VSKGYGFVSFYNDVDVQKIV 67 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-T----------S-------CEEEEEEEEESSCCCHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-C----------C-------CccceEEEEECCHHHHHHHH
Confidence 3467899999999999999999999999999999998653 1 1 13789999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeeec
Q 009552 365 AELNDEGNWRSGLRVRLMLRR 385 (532)
Q Consensus 365 ~~Ln~~~~~~~glrV~l~~k~ 385 (532)
+ ++..+.++.|.|.....+
T Consensus 68 ~--~~~~~~g~~l~v~~a~~~ 86 (102)
T 2xs2_A 68 E--SQINFHGKKLKLGPAIRK 86 (102)
T ss_dssp T--CCCEETTEECEEEEEEEC
T ss_pred h--CCCeECCEEEEEEECCcC
Confidence 8 766677777777776644
No 157
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.43 E-value=3.5e-13 Score=126.22 Aligned_cols=75 Identities=25% Similarity=0.312 Sum_probs=64.4
Q ss_pred ceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHH
Q 009552 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (532)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~L 367 (532)
..+|||+||++++|+++|+++|++||+|+.|+|...+ .+|||||||++.++|++|++.|
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~---------------------~rgfAFVeF~d~~~A~~Ai~~L 104 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---------------------NQFQALLQYADPVSAQHAKLSL 104 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS---------------------SCEEEEEEESCHHHHHHHHHHS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC---------------------CCCEEEEEECCHHHHHHHHHHh
Confidence 3579999999999999999999999999999985211 2679999999999999999999
Q ss_pred cCCCCCC--CceEEEEee
Q 009552 368 NDEGNWR--SGLRVRLML 383 (532)
Q Consensus 368 n~~~~~~--~glrV~l~~ 383 (532)
|+..+++ +.|+|.+..
T Consensus 105 nG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 105 DGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp TTBCSSSSCSCEEEEECS
T ss_pred CCCEecCCCcEEEEEEec
Confidence 9999876 566666553
No 158
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=4.1e-13 Score=113.29 Aligned_cols=73 Identities=26% Similarity=0.299 Sum_probs=63.7
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
..++|||+|| ++|+++|+++|+.||.|..|+|.. .||||||+|++.++|++||+.
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~-----------------------~~g~afV~f~~~~~a~~Ai~~ 68 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP-----------------------PRNCAFVTYEKMESADQAVAE 68 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEET-----------------------TTTEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecC-----------------------CCCEEEEEECCHHHHHHHHHH
Confidence 5689999996 899999999999999999999842 278999999999999999999
Q ss_pred HcCCCCCCCceEEEEeee
Q 009552 367 LNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 367 Ln~~~~~~~glrV~l~~k 384 (532)
|++..+.++.|+|.+...
T Consensus 69 l~g~~~~g~~l~v~~a~~ 86 (97)
T 1x5p_A 69 LNGTQVESVQLKVNIARK 86 (97)
T ss_dssp TTTEEETTEEEEEECCSS
T ss_pred hCCCeECCeEEEEEECCC
Confidence 999888877777776543
No 159
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=2.3e-13 Score=114.19 Aligned_cols=74 Identities=23% Similarity=0.244 Sum_probs=61.9
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
..++|||+|||.++|+++|+++|+.||.|..| +. ++. . .+ ||||+|++.++|++||+
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~-~~~--------------~-----g~-~afV~f~~~~~a~~ai~- 63 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VM-DKD--------------K-----GV-FAIVEMGDVGAREAVLS- 63 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EE-CSS--------------S-----CC-EEEEEESSHHHHHHHHT-
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EE-cCC--------------C-----Cc-EEEEEECCHHHHHHHHh-
Confidence 45799999999999999999999999999988 32 211 0 13 89999999999999999
Q ss_pred HcCCCCCCCceEEEEee
Q 009552 367 LNDEGNWRSGLRVRLML 383 (532)
Q Consensus 367 Ln~~~~~~~glrV~l~~ 383 (532)
||+..++++.|+|....
T Consensus 64 l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 64 QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp CSCCEETTEECCCBCSC
T ss_pred cCCeEECCEEEEEEECC
Confidence 99988888777776543
No 160
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.41 E-value=5.3e-13 Score=120.60 Aligned_cols=79 Identities=19% Similarity=0.298 Sum_probs=69.0
Q ss_pred ceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHH
Q 009552 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (532)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~L 367 (532)
+++|||+|||.++|+++|+++|+.||.|..|+|+++..+ + .++|||||+|++.++|++|++.|
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~----------~-------~~~g~afV~f~~~~~A~~a~~~l 64 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKIT----------G-------QSLGYGFVNYIDPKDAEKAINTL 64 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTT----------C-------CEEEEEEEEESSHHHHHHHHHHH
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCC----------C-------cceeEEEEEECCHHHHHHHHHHc
Confidence 579999999999999999999999999999999875421 1 13789999999999999999999
Q ss_pred cCCCCCCCceEEEEee
Q 009552 368 NDEGNWRSGLRVRLML 383 (532)
Q Consensus 368 n~~~~~~~glrV~l~~ 383 (532)
++..+.++.|+|.+..
T Consensus 65 ~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 65 NGLRLQTKTIKVSYAR 80 (167)
T ss_dssp TTCEETTEECEEEECC
T ss_pred CCCccCCceEEEEecC
Confidence 9998888888887664
No 161
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.41 E-value=2.3e-13 Score=112.88 Aligned_cols=74 Identities=26% Similarity=0.240 Sum_probs=65.9
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
..++|||+|||.++++++|+++|++| .|..|+|. ..+|||||+|++.++|++|++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-----------------------~~~g~afV~f~~~~~a~~Ai~~ 59 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-----------------------RNKRTAFVTLLNGEQAQNAIQM 59 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-----------------------GGGTEEEECCSCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-----------------------CCCcEEEEEECCHHHHHHHHHH
Confidence 46799999999999999999999999 99999883 1278999999999999999999
Q ss_pred HcCCCCCCCceEEEEeee
Q 009552 367 LNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 367 Ln~~~~~~~glrV~l~~k 384 (532)
||+..+.++.|+|.+...
T Consensus 60 l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 60 FHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp HTTEEETTEEEEEEECCC
T ss_pred hCCCeECCcEEEEEEcCC
Confidence 999988888888877643
No 162
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.40 E-value=5e-13 Score=111.85 Aligned_cols=73 Identities=22% Similarity=0.274 Sum_probs=59.3
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
....+|||+|||+++|+++|+++|++||.|..|+|.++ +||||||+|++.++|++
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----------------------srGfaFV~F~~~~~A~~--- 63 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----------------------FRAFAFVTFADDKVAQS--- 63 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----------------------CCSEEEEEESCHHHHHH---
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----------------------CCCEEEEEECCHHHHHH---
Confidence 45679999999999999999999999999999998532 27899999999999983
Q ss_pred HHcCCCCCCCceEEEEeee
Q 009552 366 ELNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~k 384 (532)
|++..+..++++|.+...
T Consensus 64 -~~~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 64 -LCGEDLIIKGISVHISNA 81 (89)
T ss_dssp -HTTCEEEETTEEEEEEEC
T ss_pred -HcCCCcccCCEEEEEEEc
Confidence 566666656677666554
No 163
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.40 E-value=4.6e-13 Score=128.90 Aligned_cols=75 Identities=17% Similarity=0.235 Sum_probs=68.0
Q ss_pred cceeEEEecCC-CcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 287 QSRIVVAENLP-EDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 287 ~~rtVyV~nLP-~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
+.++|||+||+ +++|+++|+++|+.||.|.+|+|+++ .||||||+|++.++|++||+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~----------------------~~g~afV~f~~~~~A~~Ai~ 60 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS----------------------KPGAAMVEMADGYAVDRAIT 60 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT----------------------STTCEEEEESSHHHHHHHHH
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC----------------------CCCEEEEEECCHHHHHHHHH
Confidence 46899999999 89999999999999999999999642 16899999999999999999
Q ss_pred HHcCCCCCCCceEEEEee
Q 009552 366 ELNDEGNWRSGLRVRLML 383 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~ 383 (532)
.||+..+.++.|+|.+..
T Consensus 61 ~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 61 HLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp HHTTCEETTEECEEEECS
T ss_pred HhCCCEECCceEEEEEcc
Confidence 999999999888888764
No 164
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.40 E-value=5.6e-13 Score=121.15 Aligned_cols=81 Identities=11% Similarity=0.158 Sum_probs=69.6
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
...++|||+|||.++|+++|+++|+.||.|..|+|.++..+ + .++|||||+|++.++|++|++
T Consensus 85 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~----------g-------~~~g~afV~f~~~~~a~~A~~ 147 (167)
T 2cjk_A 85 DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDT----------G-------QSRGFGFVTYDSADAVDRVCQ 147 (167)
T ss_dssp HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSS----------S-------TTSEEEEEEESSHHHHHHHHH
T ss_pred cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCC----------C-------ccceEEEEEECCHHHHHHHHh
Confidence 35689999999999999999999999999999999765321 1 237899999999999999998
Q ss_pred HHcCCCCCCCceEEEEeee
Q 009552 366 ELNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~k 384 (532)
+++..+.++.|+|.++..
T Consensus 148 -~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 148 -NKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp -CSEECSSSSCEEEEECCC
T ss_pred -CCCEEeCCeEEEEeecCC
Confidence 888888888888887653
No 165
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.40 E-value=6e-13 Score=120.12 Aligned_cols=78 Identities=22% Similarity=0.297 Sum_probs=68.4
Q ss_pred eeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHHc
Q 009552 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (532)
Q Consensus 289 rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~Ln 368 (532)
|+|||+|||.++|+++|+++|+.||.|..|+|+++.. + ..+|||||+|.+.++|++|++.|+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-----------~-------~~~g~afV~f~~~~~a~~A~~~l~ 62 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-----------N-------KNVNYAFVEYHQSHDANIALQTLN 62 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-------------------CCEEEEEEEESSHHHHHHHHHHHT
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-----------C-------CCCCEEEEEeCCHHHHHHHHHHcC
Confidence 6899999999999999999999999999999986531 1 137899999999999999999999
Q ss_pred CCCCCCCceEEEEeee
Q 009552 369 DEGNWRSGLRVRLMLR 384 (532)
Q Consensus 369 ~~~~~~~glrV~l~~k 384 (532)
+..+.++.|+|.+...
T Consensus 63 ~~~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 63 GKQIENNIVKINWAFQ 78 (166)
T ss_dssp TCEETTEECEEEECCC
T ss_pred CCccCCCeeEEEEcCC
Confidence 9988888888877643
No 166
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=2.5e-13 Score=119.96 Aligned_cols=74 Identities=19% Similarity=0.284 Sum_probs=61.0
Q ss_pred cceeEEE--ecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHH
Q 009552 287 QSRIVVA--ENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (532)
Q Consensus 287 ~~rtVyV--~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv 364 (532)
..++||| +||++++|+++|+++|++||+|..|.|.. .||||||+|++.++|++|+
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~-----------------------~rgfaFV~f~~~~~A~~Ai 80 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----------------------NKPYSFARYRTTEESKRAY 80 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT-----------------------TCSCEEEEESSHHHHHHHH
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----------------------CCCEEEEEECCHHHHHHHH
Confidence 4678999 66999999999999999999999998731 1679999999999999999
Q ss_pred HHHcCCCC---C--CCceEEEEee
Q 009552 365 AELNDEGN---W--RSGLRVRLML 383 (532)
Q Consensus 365 ~~Ln~~~~---~--~~glrV~l~~ 383 (532)
+.||+..+ . +..|.|.++.
T Consensus 81 ~~lnG~~~~~~lg~g~~l~v~~a~ 104 (114)
T 2cq2_A 81 VTLNGKEVVDDLGQKITLYLNFVE 104 (114)
T ss_dssp HHTTTCEEECTTSCEEECEEEEES
T ss_pred HHhCCCEEccccCCCcEEEEEecc
Confidence 99999865 2 3335555543
No 167
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.40 E-value=3.6e-13 Score=121.49 Aligned_cols=79 Identities=19% Similarity=0.158 Sum_probs=66.5
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEE--------EEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTI--------RTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVE 358 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~V--------ri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E 358 (532)
..++|||+|||.++|+++|+++|+.||.|..+ ++.. ++ ..+|||||+|.+.+
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~-------------~g-------~~~g~afV~f~~~~ 103 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMK-------------EG-------RMKGQAFIGLPNEK 103 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEE-------------ET-------TTEEEEEEECSSHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEecc-------------CC-------CcccEEEEEeCCHH
Confidence 56799999999999999999999999998763 3321 11 23889999999999
Q ss_pred HHHHHHHHHcCCCCCCCceEEEEeeec
Q 009552 359 LAEKAIAELNDEGNWRSGLRVRLMLRR 385 (532)
Q Consensus 359 ~AekAv~~Ln~~~~~~~glrV~l~~k~ 385 (532)
+|++||+.||+..+.++.|+|.++...
T Consensus 104 ~A~~Ai~~lng~~~~g~~l~V~~a~~~ 130 (143)
T 3egn_A 104 AAAKALKEANGYVLFGKPMVVQFARSA 130 (143)
T ss_dssp HHHHHHHHHTTBEETTEECEEEECCCS
T ss_pred HHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 999999999999998888888877543
No 168
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.39 E-value=9.7e-13 Score=122.84 Aligned_cols=82 Identities=20% Similarity=0.229 Sum_probs=71.0
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
...++|||+|||.++++++|+++|+.||.|..|+|.++..+ + ..+|||||+|++.++|++|++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~----------~-------~~~g~afV~f~~~~~a~~A~~ 174 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSAT----------G-------LSKGYAFCEYVDINVTDQAIA 174 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTT----------C-------SEEEEEEEEESSSSHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCC----------C-------CcceEEEEEECCHHHHHHHHH
Confidence 35689999999999999999999999999999999865321 1 137899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeee
Q 009552 366 ELNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~k 384 (532)
.||+..+.++.|+|.+...
T Consensus 175 ~l~g~~~~g~~l~v~~a~~ 193 (198)
T 2yh0_A 175 GLNGMQLGDKKLLVQRASV 193 (198)
T ss_dssp HHTTCEETTEECEEEESCC
T ss_pred HcCCCEECCEEEEEEECCC
Confidence 9999998888888887654
No 169
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.39 E-value=3.1e-13 Score=121.26 Aligned_cols=77 Identities=25% Similarity=0.275 Sum_probs=64.3
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCee--EEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVK--TIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~--~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv 364 (532)
..++|||+|||+++|+++|+++|+.| .|. .|+|++++. ++ +||||||+|++.++|++||
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-----------Gr-------srGfaFV~F~~~e~A~~Al 101 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-----------GK-------ITGEAFVQFASQELAEKAL 101 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-----------SS-------SCSEEEEEESSTTHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-----------CC-------CceEEEEEECCHHHHHHHH
Confidence 46789999999999999999999999 676 899876532 22 3889999999999999999
Q ss_pred HHHcCCCCCCCceEEEEee
Q 009552 365 AELNDEGNWRSGLRVRLML 383 (532)
Q Consensus 365 ~~Ln~~~~~~~glrV~l~~ 383 (532)
+. ++..+.++.|+|....
T Consensus 102 ~~-~~~~l~gR~I~V~~a~ 119 (126)
T 2hgm_A 102 GK-HKERIGHRYIEVFKSS 119 (126)
T ss_dssp TT-TTCCBTTBCCCCEEEC
T ss_pred HH-CCCEECCEEEEEEECC
Confidence 84 6677888878777654
No 170
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=6.4e-13 Score=109.94 Aligned_cols=73 Identities=22% Similarity=0.245 Sum_probs=59.1
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
..++|||+|||.++|+++|+++|+.||.|..|+|.++ .||||||+|++.++|++|
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----------------------~~g~afV~f~~~~~a~~~--- 58 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----------------------FRAFAFVTFADDQIAQSL--- 58 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----------------------CCSCCEEECSCHHHHHHT---
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----------------------CCCEEEEEECCHHHHHHH---
Confidence 5689999999999999999999999999999998532 278999999999999854
Q ss_pred HcCCCCCCCceEEEEeeec
Q 009552 367 LNDEGNWRSGLRVRLMLRR 385 (532)
Q Consensus 367 Ln~~~~~~~glrV~l~~k~ 385 (532)
++..+...+++|.+...+
T Consensus 59 -~~~~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 59 -CGEDLIIKGISVHISNAE 76 (88)
T ss_dssp -TTCEEEETTEEEEEECCC
T ss_pred -hcCCceeCCEEEEEEecC
Confidence 444454566777666543
No 171
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.38 E-value=1.2e-12 Score=123.94 Aligned_cols=81 Identities=21% Similarity=0.214 Sum_probs=68.3
Q ss_pred hccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHH
Q 009552 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (532)
Q Consensus 285 ~~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv 364 (532)
....++|||+|||.++|+++|+++|+.||.|..|+|+++..+ + ..+|||||+|++.++|++|+
T Consensus 25 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~----------g-------~~~g~afV~f~~~~~A~~A~ 87 (216)
T 2qfj_A 25 LAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVT----------M-------KHKGFAFVEYEVPEAAQLAL 87 (216)
T ss_dssp HHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC------------------CCCSEEEEEESSHHHHHHHH
T ss_pred cCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCC----------C-------ccCceEEEEeCCHHHHHHHH
Confidence 345789999999999999999999999999999999765321 1 13789999999999999999
Q ss_pred HHHcCCCCCCCceEEEEe
Q 009552 365 AELNDEGNWRSGLRVRLM 382 (532)
Q Consensus 365 ~~Ln~~~~~~~glrV~l~ 382 (532)
+.|++..+.++.|+|...
T Consensus 88 ~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 88 EQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHSSCCCC-CCCEEECC
T ss_pred HHccCCeeCCeeEEEecC
Confidence 999999888888887543
No 172
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=2.3e-13 Score=121.50 Aligned_cols=77 Identities=16% Similarity=0.152 Sum_probs=63.4
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCe----eEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSV----KTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V----~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~Aek 362 (532)
..++|||+|||+++|+++|+++|+.||.| ..|+|+++. .++ .+|||||+|++.++|++
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-----------~gr-------~~G~aFV~F~~~~~A~~ 83 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-----------DGR-------PTGDAFVLFACEEYAQN 83 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-----------TSC-------EEEEEEECCSSHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-----------CCC-------EeeEEEEEECCHHHHHH
Confidence 46799999999999999999999999975 689987652 122 38899999999999999
Q ss_pred HHHHHcCCCCCCCceEEEEe
Q 009552 363 AIAELNDEGNWRSGLRVRLM 382 (532)
Q Consensus 363 Av~~Ln~~~~~~~glrV~l~ 382 (532)
||+. ++..+.++-|+|...
T Consensus 84 Al~~-~~~~l~gR~i~V~~a 102 (123)
T 2dha_A 84 ALRK-HKDLLGKRYIELFRS 102 (123)
T ss_dssp HHTT-TTEESSSCEECCEEE
T ss_pred HHHh-CCCeeCCeEEEEEEC
Confidence 9985 877777766666554
No 173
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.37 E-value=1.3e-12 Score=117.89 Aligned_cols=73 Identities=25% Similarity=0.281 Sum_probs=61.5
Q ss_pred eeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccE-EEEEeCCHHHHHHHHHHH
Q 009552 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLH-AFVEYESVELAEKAIAEL 367 (532)
Q Consensus 289 rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~-AFVEFet~E~AekAv~~L 367 (532)
..|||+||++.+|+++|+++|++||.|..|+|... .+|| |||||++.++|++|++.|
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----------------------~~gfqAFVef~~~~~A~~Ai~~L 86 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----------------------NNQFQALLQYADPVSAQHAKLSL 86 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----------------------TTEEEEEEEESCHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----------------------CCCcEEEEEECCHHHHHHHHHHc
Confidence 47899999999999999999999999999998531 1566 999999999999999999
Q ss_pred cCCCCCCCceEEEEee
Q 009552 368 NDEGNWRSGLRVRLML 383 (532)
Q Consensus 368 n~~~~~~~glrV~l~~ 383 (532)
|+..+.+....|+|..
T Consensus 87 nG~~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 87 DGQNIYNACCTLRIDF 102 (130)
T ss_dssp TTCEEETTEEEEEEEE
T ss_pred CCCeecCCCcEEEEEe
Confidence 9999887434444443
No 174
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.37 E-value=1.3e-12 Score=115.77 Aligned_cols=75 Identities=25% Similarity=0.288 Sum_probs=66.7
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
...++|||+|| ++|+++|+++|+.||.|..|+|.. .||||||+|++.++|++||+
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~-----------------------~kg~aFV~f~~~~~A~~Ai~ 91 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP-----------------------PRNCAFVTYEKMESADQAVA 91 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEET-----------------------TTTEEEEECSSHHHHHHHHH
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeC-----------------------CCCEEEEEECCHHHHHHHHH
Confidence 46789999996 799999999999999999999842 27899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeec
Q 009552 366 ELNDEGNWRSGLRVRLMLRR 385 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~k~ 385 (532)
.||+..++++.|+|.+...+
T Consensus 92 ~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 92 ELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp HHTTCBCSSCBCEEEECCSS
T ss_pred HhCCCEECCeEEEEEEeCCC
Confidence 99999999988998887543
No 175
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.37 E-value=7.8e-13 Score=120.06 Aligned_cols=81 Identities=23% Similarity=0.304 Sum_probs=69.0
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
..++|||+|||.++|+++|+++|+.||.|..|+|+++.. ++ .++|||||+|++.++|++|++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~----------~~-------~~~g~afV~f~~~~~A~~a~~~ 64 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYK----------TG-------YSYGYAFVDFTSEMDSQRAIKV 64 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETT----------TT-------EECSEEEEEESSHHHHHHHHHH
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCC----------CC-------ccceEEEEEECCHHHHHHHHHh
Confidence 358999999999999999999999999999999976432 11 1378999999999999999999
Q ss_pred HcCCCCCCCceEEEEeee
Q 009552 367 LNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 367 Ln~~~~~~~glrV~l~~k 384 (532)
|++..+.++.|+|.+...
T Consensus 65 l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 65 LNGITVRNKRLKVSYARP 82 (168)
T ss_dssp HTTCEETTEECEEEECCC
T ss_pred cCCCEeCCcEEEEEecCC
Confidence 999888887777776543
No 176
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=6.3e-13 Score=115.79 Aligned_cols=67 Identities=19% Similarity=0.155 Sum_probs=55.3
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
..++|||+|||+++|+++|+++|++||.|. ++++.+..+.. .+ ..||||||+|++.++|++||+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~-------~g-------~~~G~aFV~f~~~~~a~~Ai~~ 71 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKS-------YF-------PPKGYAFLLFQEESSVQALIDA 71 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCC-------CS-------CTTSEEEECCSSHHHHHHHHHH
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCC-------CC-------CcccEEEEEECCHHHHHHHHHh
Confidence 568999999999999999999999999999 77765432100 01 2388999999999999999998
Q ss_pred Hc
Q 009552 367 LN 368 (532)
Q Consensus 367 Ln 368 (532)
|+
T Consensus 72 ~~ 73 (114)
T 2dnl_A 72 CL 73 (114)
T ss_dssp SE
T ss_pred hh
Confidence 85
No 177
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.37 E-value=2.4e-12 Score=115.19 Aligned_cols=71 Identities=28% Similarity=0.284 Sum_probs=60.6
Q ss_pred eeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccE-EEEEeCCHHHHHHHHHHH
Q 009552 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLH-AFVEYESVELAEKAIAEL 367 (532)
Q Consensus 289 rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~-AFVEFet~E~AekAv~~L 367 (532)
..|||+||++.+|+++|+++|++||.|+.|+|.. | .|| |||||++.++|++|++.|
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~------------~-----------~Gf~aFVef~~~~~A~~A~~~L 82 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK------------R-----------NGIQAMVEFESVLCAQKAKAAL 82 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE------------S-----------SSEEEEEEESSHHHHHHHHHHH
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe------------C-----------CCCEEEEEECCHHHHHHHHHHh
Confidence 4578999999999999999999999999999842 0 255 999999999999999999
Q ss_pred cCCCCCCC--ceEEEEe
Q 009552 368 NDEGNWRS--GLRVRLM 382 (532)
Q Consensus 368 n~~~~~~~--glrV~l~ 382 (532)
|+..++++ .|+|.++
T Consensus 83 nG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 83 NGADIYAGCCTLKIEYA 99 (124)
T ss_dssp TTCCCBTTBSEEEEECC
T ss_pred CCCEecCCCeEEEEEEe
Confidence 99998875 4555544
No 178
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.36 E-value=2.2e-12 Score=117.70 Aligned_cols=72 Identities=17% Similarity=0.208 Sum_probs=61.4
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
++++|||+|||.++|+++|+++|+.||.|..|+|+++...+ ...++|||||+|++.++|++|++.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~---------------~~~~~g~afV~f~~~~~A~~A~~~ 66 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQN---------------PPQSKGCCFVTFYTRKAALEAQNA 66 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSS---------------SCEEEEEEEEEESSHHHHHHHHHH
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCC---------------CCCcceEEEEEECCHHHHHHHHHH
Confidence 46899999999999999999999999999999998754211 002388999999999999999999
Q ss_pred HcCCCCC
Q 009552 367 LNDEGNW 373 (532)
Q Consensus 367 Ln~~~~~ 373 (532)
|++..+.
T Consensus 67 l~~~~~~ 73 (175)
T 3nmr_A 67 LHNMKVL 73 (175)
T ss_dssp HTTTCCC
T ss_pred hcCcEEc
Confidence 9987654
No 179
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.36 E-value=1.3e-12 Score=121.67 Aligned_cols=81 Identities=15% Similarity=0.144 Sum_probs=68.1
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
...++|||+|||.++|+++|+++|+.||.|..|+|+++..+ + .++|||||+|.+.++|++||+
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~----------g-------~~~g~afV~f~~~~~A~~A~~ 73 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNT----------K-------RSRGFGFVTYATVEEVDAAMN 73 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT----------C-------CEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCC----------C-------CccceEEEEeCCHHHHHHHHh
Confidence 46789999999999999999999999999999999875421 1 137899999999999999997
Q ss_pred HHcCCCCCCCceEEEEeee
Q 009552 366 ELNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~k 384 (532)
. ++..+.++.|+|.....
T Consensus 74 ~-~~~~~~g~~l~v~~~~~ 91 (196)
T 1l3k_A 74 A-RPHKVDGRVVEPKRAVS 91 (196)
T ss_dssp T-CSCEETTEECEEEECCC
T ss_pred c-CCCEECCEEeeeecccC
Confidence 5 77777777777776543
No 180
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.35 E-value=2.7e-12 Score=117.87 Aligned_cols=77 Identities=18% Similarity=0.199 Sum_probs=64.9
Q ss_pred hccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHH
Q 009552 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (532)
Q Consensus 285 ~~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv 364 (532)
....++|||+|||.++|+++|+++|+.||.|..+ .. .+ .++|||||+|++.++|++|+
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~---~~------------~~-------~~~g~afV~f~~~~~A~~A~ 153 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV---SQ------------DG-------KSKGIAYIEFKSEADAEKNL 153 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE---CS------------SS-------SCCSEEEEECSSHHHHHHHH
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe---cC------------CC-------CCceEEEEEECCHHHHHHHH
Confidence 3467899999999999999999999999988766 11 01 13789999999999999999
Q ss_pred HHHcCCCCCCCceEEEEee
Q 009552 365 AELNDEGNWRSGLRVRLML 383 (532)
Q Consensus 365 ~~Ln~~~~~~~glrV~l~~ 383 (532)
+.||+..+.++.|+|.++.
T Consensus 154 ~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 154 EEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp HHHTEEEETTEEEEEEECS
T ss_pred HHhCCCEECCeEEEEEecC
Confidence 9999988888877777664
No 181
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.34 E-value=8.6e-12 Score=117.11 Aligned_cols=74 Identities=26% Similarity=0.330 Sum_probs=66.8
Q ss_pred ceeEEEecCCCcCcHHHHHHHhhhcC-CeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 288 SRIVVAENLPEDHCHQNLMKIFSAVG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~elFs~fG-~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
.++|||+|||.++|+++|+++|+.|| .|..|+|+.+ .+|+|||+|++.++|++|++.
T Consensus 120 ~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~----------------------~~g~afV~f~~~~~A~~A~~~ 177 (198)
T 1qm9_A 120 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----------------------DRKMALIQMGSVEEAVQALID 177 (198)
T ss_dssp CCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST----------------------TSSCEEEECSSHHHHHHHHHH
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC----------------------CCcEEEEEeCCHHHHHHHHHH
Confidence 68999999999999999999999999 9999999532 167999999999999999999
Q ss_pred HcCCCCC-CCceEEEEee
Q 009552 367 LNDEGNW-RSGLRVRLML 383 (532)
Q Consensus 367 Ln~~~~~-~~glrV~l~~ 383 (532)
||+..+. ++.|+|.+..
T Consensus 178 l~g~~~~~g~~l~v~~a~ 195 (198)
T 1qm9_A 178 LHNHDLGENHHLRVSFSK 195 (198)
T ss_dssp HTSSCCSSCCSCCEEEEC
T ss_pred hcCCccCCCCeEEEEeec
Confidence 9999888 7888888764
No 182
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.33 E-value=2.5e-12 Score=127.33 Aligned_cols=77 Identities=18% Similarity=0.228 Sum_probs=67.8
Q ss_pred ccceeEEEecCCCcC---------cHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCC
Q 009552 286 LQSRIVVAENLPEDH---------CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES 356 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~---------t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet 356 (532)
...+||||+||+.++ ++++|+++|++||+|..|+|+. +||||||+|++
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-----------------------~kG~AFV~F~~ 188 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-----------------------SKNCGFVKFKY 188 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-----------------------GGTEEEEEESS
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC-----------------------CCCEEEEEeCC
Confidence 467899999999998 7999999999999999999963 27899999999
Q ss_pred HHHHHHHHHHHcCCCC------------CCCceEEEEeeec
Q 009552 357 VELAEKAIAELNDEGN------------WRSGLRVRLMLRR 385 (532)
Q Consensus 357 ~E~AekAv~~Ln~~~~------------~~~glrV~l~~k~ 385 (532)
.++|++|++.|++..+ .++.|+|+++...
T Consensus 189 ~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 189 QANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp HHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC--
T ss_pred HHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCC
Confidence 9999999999999988 6778888887643
No 183
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=2.6e-12 Score=109.67 Aligned_cols=72 Identities=18% Similarity=0.287 Sum_probs=62.7
Q ss_pred cee-EEEecCCCcCcHHH----HHHHhhhc-CCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHH
Q 009552 288 SRI-VVAENLPEDHCHQN----LMKIFSAV-GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAE 361 (532)
Q Consensus 288 ~rt-VyV~nLP~d~t~ed----L~elFs~f-G~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~Ae 361 (532)
+.| |||.|||+++++++ |+++|+.| |+|..|. .|+|||+|++.|+|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt---------------------------gG~AfV~F~~~esA~ 60 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT---------------------------GCSAILRFINQDSAE 60 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC---------------------------TTCEEEEESSHHHHH
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe---------------------------cCEEEEEECCHHHHH
Confidence 445 99999999999887 56899999 5998871 268999999999999
Q ss_pred HHHHHHcCCCCCCCceEEEEeeecC
Q 009552 362 KAIAELNDEGNWRSGLRVRLMLRRG 386 (532)
Q Consensus 362 kAv~~Ln~~~~~~~glrV~l~~k~~ 386 (532)
+|++.|++..+.++.|+|.++..+.
T Consensus 61 ~A~~~l~G~~l~gr~i~v~~A~~~s 85 (96)
T 2diu_A 61 RAQKRMENEDVFGNRIIVSFTPKNR 85 (96)
T ss_dssp HHHHHHTTCCSSSSCCEEESSCCSC
T ss_pred HHHHHhcCCccCCceEEEEecCCCc
Confidence 9999999999999999999876543
No 184
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.32 E-value=3.7e-12 Score=126.95 Aligned_cols=82 Identities=24% Similarity=0.306 Sum_probs=69.1
Q ss_pred ccceeEEEecCCCc-CcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHH
Q 009552 286 LQSRIVVAENLPED-HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (532)
Q Consensus 286 ~~~rtVyV~nLP~d-~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv 364 (532)
...++|||+|||.+ +|+++|+++|+.||.|..|+|.++... ++ ..+|||||+|++.++|++|+
T Consensus 208 ~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~---------tg-------~~~g~afV~F~~~~~A~~A~ 271 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKE---------HS-------FNNCCAFMVFENKDSAERAL 271 (292)
T ss_dssp CTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC-------------------CCCEEEEEEESSHHHHHHHG
T ss_pred CCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCc---------CC-------CCceEEEEEeCCHHHHHHHH
Confidence 45689999999999 999999999999999999999764210 01 23789999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeee
Q 009552 365 AELNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 365 ~~Ln~~~~~~~glrV~l~~k 384 (532)
.||+..+.++.|+|.++..
T Consensus 272 -~l~g~~~~g~~i~V~~a~~ 290 (292)
T 2ghp_A 272 -QMNRSLLGNREISVSLADK 290 (292)
T ss_dssp -GGTTEEETTEEEEEEECCC
T ss_pred -HhcCCEECCcEEEEEEecC
Confidence 9999988888888877654
No 185
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.32 E-value=4.4e-12 Score=122.92 Aligned_cols=77 Identities=21% Similarity=0.307 Sum_probs=69.1
Q ss_pred ccceeEEEecCCC-cCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHH
Q 009552 286 LQSRIVVAENLPE-DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (532)
Q Consensus 286 ~~~rtVyV~nLP~-d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv 364 (532)
..+++|||+|||. ++++++|+++|+.||.|..|+|++++ +|||||+|.+.++|++|+
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----------------------~g~afV~F~~~~~A~~Ai 89 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----------------------KENALVQMADGNQAQLAM 89 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----------------------SCCEEEEESCHHHHHHHH
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----------------------CCEEEEEECCHHHHHHHH
Confidence 4678999999999 99999999999999999999997531 579999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeee
Q 009552 365 AELNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 365 ~~Ln~~~~~~~glrV~l~~k 384 (532)
+.|++..+.++.|+|.+...
T Consensus 90 ~~l~g~~~~g~~l~v~~a~~ 109 (229)
T 2adc_A 90 SHLNGHKLHGKPIRITLSKH 109 (229)
T ss_dssp HHHTTCBCSSSBCEEECCSC
T ss_pred HHhCCCeECCeEEEEEEecC
Confidence 99999999888888887643
No 186
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.32 E-value=6.1e-12 Score=109.04 Aligned_cols=82 Identities=17% Similarity=0.163 Sum_probs=67.1
Q ss_pred ccceeEEEecCCC-----cCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHH
Q 009552 286 LQSRIVVAENLPE-----DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELA 360 (532)
Q Consensus 286 ~~~rtVyV~nLP~-----d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~A 360 (532)
..+++|+|.||-. +.++++|+++|++||+|..|+|+++.... + ..+|||||+|++.++|
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~---------~-------~~~G~~FV~f~~~~~A 69 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAP---------D-------DEAVRIFLEFERVESA 69 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCC---------T-------TTSEEEEEEESSHHHH
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCC---------C-------CCcEEEEEEECCHHHH
Confidence 4678999999952 34789999999999999999998653210 0 1378999999999999
Q ss_pred HHHHHHHcCCCCCCCceEEEEee
Q 009552 361 EKAIAELNDEGNWRSGLRVRLML 383 (532)
Q Consensus 361 ekAv~~Ln~~~~~~~glrV~l~~ 383 (532)
++|++.||+..+.++.|+|.++.
T Consensus 70 ~~Ai~~lnG~~~~Gr~i~v~~a~ 92 (105)
T 2pe8_A 70 IKAVVDLNGRYFGGRVVKACFYN 92 (105)
T ss_dssp HHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHCCCEECCcEEEEEEcC
Confidence 99999999999988888888764
No 187
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.31 E-value=2.8e-12 Score=120.45 Aligned_cols=76 Identities=21% Similarity=0.316 Sum_probs=68.4
Q ss_pred cceeEEEecCCC-cCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 287 QSRIVVAENLPE-DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 287 ~~rtVyV~nLP~-d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
.+++|||+|||. ++++++|+++|+.||.|..|+|++++ +|||||+|++.++|++|++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----------------------~g~afV~f~~~~~a~~A~~ 59 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----------------------KENALVQMADGNQAQLAMS 59 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----------------------SSCCEEECTTTHHHHHHHH
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----------------------CCEEEEEECCHHHHHHHHH
Confidence 468999999999 99999999999999999999996531 5799999999999999999
Q ss_pred HHcCCCCCCCceEEEEeee
Q 009552 366 ELNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~k 384 (532)
.|++..+.++.|+|.+...
T Consensus 60 ~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 60 HLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp HHTTCCCSSCCCEEEECCC
T ss_pred HhCCCeecCeEEEEEEecC
Confidence 9999999888898887654
No 188
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.29 E-value=6.9e-12 Score=124.32 Aligned_cols=79 Identities=22% Similarity=0.271 Sum_probs=69.1
Q ss_pred ccceeEEEecCCCcCcHHHHH----HHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLM----KIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAE 361 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~----elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~Ae 361 (532)
..+++|||+|||.++|+++|+ ++|+.||.|..|+|++. ++ .||||||+|++.++|+
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~-------------~~-------~~g~afV~f~~~~~a~ 66 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRS-------------LK-------MRGQAFVIFKEVSSAT 66 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCC-------------CC-------cceEEEEEECCHHHHH
Confidence 457899999999999999977 89999999999998641 11 3789999999999999
Q ss_pred HHHHHHcCCCCCCCceEEEEeee
Q 009552 362 KAIAELNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 362 kAv~~Ln~~~~~~~glrV~l~~k 384 (532)
+||+.||+..++++.|+|.+...
T Consensus 67 ~A~~~l~g~~~~g~~l~v~~a~~ 89 (282)
T 3pgw_A 67 NALRSMQGFPFYDKPMRIQYAKT 89 (282)
T ss_pred HHHHHhcCCeeCCcEEEEEEecc
Confidence 99999999999998888887744
No 189
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.27 E-value=4.4e-12 Score=115.18 Aligned_cols=76 Identities=13% Similarity=0.167 Sum_probs=60.9
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
++++|||+|||.++|+++|+++|+.||.|..|+|+++..+ + .++|||||+|++.++|++|++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~----------g-------~~~g~afV~f~~~~~a~~A~~~ 64 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPAT----------G-------RSRGFGFLSFEKPSSVDEVVKT 64 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTT----------S-------SCCSCEEEEESSTHHHHHHHHS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCC----------C-------CccceEEEEEccHHHHHHHHhc
Confidence 4689999999999999999999999999999999765321 1 1378999999999999999984
Q ss_pred HcCCCCCCCceEEEE
Q 009552 367 LNDEGNWRSGLRVRL 381 (532)
Q Consensus 367 Ln~~~~~~~glrV~l 381 (532)
...+.++.|+|..
T Consensus 65 --~~~~~g~~i~v~~ 77 (167)
T 2cjk_A 65 --QHILDGKVIDPKR 77 (167)
T ss_dssp --CCEETTEECCCEE
T ss_pred --ccccCCeEccccc
Confidence 2344444454443
No 190
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.26 E-value=3.7e-12 Score=114.77 Aligned_cols=77 Identities=14% Similarity=0.038 Sum_probs=64.9
Q ss_pred eeEEEecC----CCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCC----HHH-
Q 009552 289 RIVVAENL----PEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES----VEL- 359 (532)
Q Consensus 289 rtVyV~nL----P~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet----~E~- 359 (532)
..|||+|| ++++++++|+++|+.||+|..++++.|+.++. ++|||||+|.+ .++
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~-----------------slGfgfVef~d~~g~~d~a 65 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSAL-----------------PLHVYLIKYASSDGKINDA 65 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCC-----------------EEEEEEEECC------CCH
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCc-----------------eeeEEEEEECCCCCCcchH
Confidence 57999999 99999999999999999999999998875432 38999999996 333
Q ss_pred ---HHHHHH--HHcCCCCCCCceEEEEe
Q 009552 360 ---AEKAIA--ELNDEGNWRSGLRVRLM 382 (532)
Q Consensus 360 ---AekAv~--~Ln~~~~~~~glrV~l~ 382 (532)
|.+|++ .||+..+.++.|+|.+-
T Consensus 66 ~kAA~kAi~~~~lng~~I~Gr~irV~ln 93 (136)
T 2j8a_A 66 AKAAFSAVRKHESSGCFIMGFKFEVILN 93 (136)
T ss_dssp HHHHHHHHHHTTTTCEEETTEEEEEEEC
T ss_pred HHHHHHHHHHhhhcCCeecCcEEEEEEC
Confidence 889988 78888888888888864
No 191
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.25 E-value=1.7e-11 Score=121.69 Aligned_cols=82 Identities=29% Similarity=0.270 Sum_probs=70.6
Q ss_pred hccceeEEEecCCCcC-cHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHH
Q 009552 285 ELQSRIVVAENLPEDH-CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (532)
Q Consensus 285 ~~~~rtVyV~nLP~d~-t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekA 363 (532)
....++|||+|||.++ |+++|+++|+.||.|..|+|.++.+ + .++|+|||+|++.++|++|
T Consensus 181 ~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~-----------g-------~~~g~afV~f~~~~~A~~A 242 (284)
T 3smz_A 181 LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQD-----------G-------QLKGFAVLEYETAEMAEEA 242 (284)
T ss_dssp TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSS-----------C-------CEEEEEEEECSSHHHHHHH
T ss_pred cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCC-----------C-------CcccEEEEEeCCHHHHHHH
Confidence 3467899999999995 9999999999999999999976531 1 2378999999999999999
Q ss_pred HHHHcCCCCCCCceEEEEeee
Q 009552 364 IAELNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 364 v~~Ln~~~~~~~glrV~l~~k 384 (532)
++.||+..+.++.|+|.+...
T Consensus 243 ~~~l~g~~~~g~~l~v~~a~~ 263 (284)
T 3smz_A 243 QQQADGLSLGGSHLRVSFCAP 263 (284)
T ss_dssp HHHHTTCEETTEECEEEECCS
T ss_pred HHHhCCCccCCeEEEEEEecC
Confidence 999999999888888887754
No 192
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.24 E-value=1.4e-11 Score=121.84 Aligned_cols=75 Identities=27% Similarity=0.301 Sum_probs=67.5
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
...++|||+|||.++|+++|+++|+.||.|..|+|.++ +|||||+|.+.++|++|++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----------------------kg~afV~f~~~~~A~~A~~ 76 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD-----------------------RGFGFIRLESRTLAEIAKA 76 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT-----------------------TTEEEEECSSHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----------------------CcEEEEEECCHHHHHHHHH
Confidence 46789999999999999999999999999999999531 6799999999999999999
Q ss_pred HHcCCCCCCCceEEEEee
Q 009552 366 ELNDEGNWRSGLRVRLML 383 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~ 383 (532)
.|++..+.++.|+|.+..
T Consensus 77 ~l~g~~i~g~~l~v~~a~ 94 (261)
T 3sde_A 77 ELDGTILKSRPLRIRFAT 94 (261)
T ss_dssp HHTTCEETTEECEEEECC
T ss_pred HcCCcEECCceeEeeecc
Confidence 999998888888887654
No 193
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.23 E-value=3.3e-11 Score=119.57 Aligned_cols=82 Identities=18% Similarity=0.205 Sum_probs=70.9
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
..++|||+|||.++|+++|+++|+.||.|..|+|+++..+ + .++|||||+|.+.++|++|++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~----------g-------~~~g~afV~f~~~~~a~~A~~~ 156 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERT----------G-------QSKGYGFAEYMKKDSAARAKSD 156 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT----------C-------CEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCC----------C-------ccceEEEEEECCHHHHHHHHHH
Confidence 4579999999999999999999999999999999865421 1 2378999999999999999999
Q ss_pred HcCCCCCCCceEEEEeeec
Q 009552 367 LNDEGNWRSGLRVRLMLRR 385 (532)
Q Consensus 367 Ln~~~~~~~glrV~l~~k~ 385 (532)
|++..+.++.|+|.+....
T Consensus 157 l~~~~~~g~~i~v~~a~~~ 175 (284)
T 3smz_A 157 LLGKPLGPRTLYVHWTDAG 175 (284)
T ss_dssp HTTCEETTEECEEEECCGG
T ss_pred hCCCEeCCcEEEEEECCCC
Confidence 9999888888888877543
No 194
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.20 E-value=4.6e-11 Score=118.12 Aligned_cols=80 Identities=20% Similarity=0.236 Sum_probs=65.9
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
..++|||+|||.++|+++|+++|+.||.|..|+|+.+.+ ++ .+|||||+|++.++|.+|++.
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----------g~-------~~g~afV~f~~~~~A~~A~~~ 156 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDR-----------GR-------ATGKGFVEFAAKPPARKALER 156 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-----------SC-------EEEEEEEEESSHHHHHHHHHH
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCC-----------CC-------cCcEEEEEeCCHHHHHHHHHH
Confidence 357999999999999999999999999999999986521 11 378999999999999999999
Q ss_pred HcCCCCC----CCceEEEEeee
Q 009552 367 LNDEGNW----RSGLRVRLMLR 384 (532)
Q Consensus 367 Ln~~~~~----~~glrV~l~~k 384 (532)
||+..+. ++.+.|..+..
T Consensus 157 l~~~~~~~~~~~r~i~v~~~~~ 178 (261)
T 3sde_A 157 CGDGAFLLTTTPRPVIVEPMEQ 178 (261)
T ss_dssp HHHSCEESSSSCCBCEEEECCC
T ss_pred hcCCeEEecCCCceEEEeeccc
Confidence 9654332 66677776653
No 195
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=3.7e-11 Score=104.28 Aligned_cols=77 Identities=16% Similarity=0.134 Sum_probs=63.7
Q ss_pred cceeEEEecCCCcC-----------cHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeC
Q 009552 287 QSRIVVAENLPEDH-----------CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYE 355 (532)
Q Consensus 287 ~~rtVyV~nLP~d~-----------t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFe 355 (532)
.+++|+|.||-... ++++|+++|++||.|..|.|. ++ ..+|||||+|+
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~-~~--------------------~~~G~afV~f~ 72 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLF-DR--------------------HPDGVASVSFR 72 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEE-TT--------------------CTTCEEEEECS
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEe-cC--------------------CCCEEEEEEEC
Confidence 57899999993322 257999999999999999773 21 02789999999
Q ss_pred CHHHHHHHHHHHcCCCCCCCceEEEEeee
Q 009552 356 SVELAEKAIAELNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 356 t~E~AekAv~~Ln~~~~~~~glrV~l~~k 384 (532)
+.++|++|++.||+..+.++.|+|.++..
T Consensus 73 ~~~~A~~Ai~~lng~~~~gr~l~v~~a~~ 101 (112)
T 2dit_A 73 DPEEADYCIQTLDGRWFGGRQITAQAWDG 101 (112)
T ss_dssp CHHHHHHHHHHSTTCEETTEECEEEECCS
T ss_pred CHHHHHHHHHHcCCCEECCcEEEEEEeCC
Confidence 99999999999999988888888887654
No 196
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.19 E-value=3e-11 Score=110.20 Aligned_cols=72 Identities=24% Similarity=0.352 Sum_probs=61.9
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhc----C-------CeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeC
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAV----G-------SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYE 355 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~f----G-------~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFe 355 (532)
+.++|||+|||.++|+++|+++|+.| | .|..+++.+ .+|||||+|+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~-----------------------~~g~afV~f~ 59 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----------------------DKNFAFLEFR 59 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET-----------------------TTTEEEEEES
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC-----------------------CCCEEEEEeC
Confidence 46899999999999999999999999 6 677777642 2789999999
Q ss_pred CHHHHHHHHHHHcCCCCCCCceEEEEe
Q 009552 356 SVELAEKAIAELNDEGNWRSGLRVRLM 382 (532)
Q Consensus 356 t~E~AekAv~~Ln~~~~~~~glrV~l~ 382 (532)
+.++|++|+ .|++..+.++.|+|...
T Consensus 60 ~~~~A~~A~-~~~~~~~~g~~i~v~~~ 85 (172)
T 2g4b_A 60 SVDETTQAM-AFDGIIFQGQSLKIRRP 85 (172)
T ss_dssp SHHHHHHHG-GGTTCEETTEECEEECC
T ss_pred CHHHHHHHH-HhCCcEecCceeeecCC
Confidence 999999999 79998888877777654
No 197
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.17 E-value=2.4e-11 Score=116.83 Aligned_cols=71 Identities=15% Similarity=0.202 Sum_probs=61.3
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCe--eEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSV--KTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V--~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv 364 (532)
..++|||+|||.++|+++|+++|+.||.| ..|+|..++ + ..+|||||+|++.++|.+||
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~------------~-------~~~g~gfV~f~~~~~A~~Ai 182 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK------------S-------ERSSSGLLEWDSKSDALETL 182 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC------------S-------SSSEEEEEECSSHHHHHHHH
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC------------C-------CCceEEEEEeCCHHHHHHHH
Confidence 35689999999999999999999999999 899986532 0 11689999999999999999
Q ss_pred HHHcCCCCCCCc
Q 009552 365 AELNDEGNWRSG 376 (532)
Q Consensus 365 ~~Ln~~~~~~~g 376 (532)
+.||+..+.+.+
T Consensus 183 ~~lng~~~~g~~ 194 (205)
T 3tyt_A 183 GFLNHYQMKNPN 194 (205)
T ss_dssp HHHTTCEECCSS
T ss_pred HHhCCCCccCCC
Confidence 999998777765
No 198
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.16 E-value=7e-11 Score=102.25 Aligned_cols=82 Identities=21% Similarity=0.194 Sum_probs=65.5
Q ss_pred cceeEEEecC--CCcC--------cHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCC
Q 009552 287 QSRIVVAENL--PEDH--------CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES 356 (532)
Q Consensus 287 ~~rtVyV~nL--P~d~--------t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet 356 (532)
.+++|++.|+ +.+. .+++|++.|++||.|.+|+|.++.... . ...+|||||+|++
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~----------~-----~~~~G~~fV~f~~ 68 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGV----------E-----VPGCGKIFVEFTS 68 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTB----------C-----CTTTTEEEEEESS
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCC----------C-----cCCcEEEEEEECC
Confidence 5678888988 3333 347899999999999999997653210 0 1137899999999
Q ss_pred HHHHHHHHHHHcCCCCCCCceEEEEee
Q 009552 357 VELAEKAIAELNDEGNWRSGLRVRLML 383 (532)
Q Consensus 357 ~E~AekAv~~Ln~~~~~~~glrV~l~~ 383 (532)
.++|++|++.||+..+.++.|+|.+..
T Consensus 69 ~~~A~~Ai~~lnG~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 69 VFDCQKAMQGLTGRKFANRVVVTKYCD 95 (105)
T ss_dssp HHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHHHHHhCCCEeCCCEEEEEEeC
Confidence 999999999999999998888888764
No 199
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.15 E-value=3.9e-11 Score=111.88 Aligned_cols=73 Identities=23% Similarity=0.333 Sum_probs=60.5
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhc----C-------CeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeC
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAV----G-------SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYE 355 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~f----G-------~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFe 355 (532)
.+|+|||+|||.++|+++|+++|+.| | .|..+++.+ .+|||||+|.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~-----------------------~~g~afV~F~ 59 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----------------------DKNFAFLEFR 59 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEET-----------------------TTTEEEEEES
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecC-----------------------CCCEEEEEeC
Confidence 46899999999999999999999999 4 555555521 2789999999
Q ss_pred CHHHHHHHHHHHcCCCCCCCceEEEEee
Q 009552 356 SVELAEKAIAELNDEGNWRSGLRVRLML 383 (532)
Q Consensus 356 t~E~AekAv~~Ln~~~~~~~glrV~l~~ 383 (532)
+.++|++|+ .||+..+.++.|+|....
T Consensus 60 ~~~~A~~Al-~l~g~~~~g~~i~v~~~~ 86 (198)
T 2yh0_A 60 SVDETTQAM-AFDGIIFQGQSLKIRRPH 86 (198)
T ss_dssp CSHHHHHHG-GGTTEEETTEEEEEECCC
T ss_pred CHHHHHHHH-HhcCCEEcCceEEEeCCC
Confidence 999999999 799988877777776543
No 200
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.13 E-value=1.2e-10 Score=116.00 Aligned_cols=80 Identities=15% Similarity=0.147 Sum_probs=67.4
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcC-CeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG-~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
..++|||+|||.++|+++|+++|+.|| .|..|+|..+.. + ..+|||||+|.+.++|++|++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-----------~-------~~~g~afV~f~~~~~a~~A~~ 177 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-----------N-------TSRRFAYIDVTSKEDARYCVE 177 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------------------------CCEEEEECSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-----------C-------CcceEEEEEECCHHHHHHHHH
Confidence 568999999999999999999999999 999999975431 1 137899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeee
Q 009552 366 ELNDEGNWRSGLRVRLMLR 384 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~k 384 (532)
.|++..++++.|+|.+...
T Consensus 178 ~l~g~~~~g~~l~v~~a~~ 196 (292)
T 2ghp_A 178 KLNGLKIEGYTLVTKVSNP 196 (292)
T ss_dssp HHTTCEETTEECEEEECCC
T ss_pred HhCCCEeCCcEEEEEECCC
Confidence 9999998888888877653
No 201
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.11 E-value=1.9e-11 Score=112.15 Aligned_cols=79 Identities=18% Similarity=0.210 Sum_probs=63.0
Q ss_pred ccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHH
Q 009552 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (532)
Q Consensus 286 ~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (532)
...++|||+|||.++|+++|+++|+.||.|..+.|+ +. +.+ ..+|||||+|++.++|++|++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~-~~----------~~~-------~~~g~afV~f~~~~~a~~A~~ 72 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVV-DV----------RTG-------TNRKFGYVDFESAEDLEKALE 72 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCC-EE----------EEE-------TTTTEEEEEESSHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEE-EC----------CCC-------ccccEEEEEECCHHHHHHHHh
Confidence 467899999999999999999999999987663222 11 111 237899999999999999995
Q ss_pred HHcCCCCCCCceEEEEee
Q 009552 366 ELNDEGNWRSGLRVRLML 383 (532)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~ 383 (532)
||+..+.++.|+|....
T Consensus 73 -l~g~~~~g~~l~v~~~~ 89 (175)
T 1fje_B 73 -LTGLKVFGNEIKLEKPK 89 (175)
T ss_dssp -GGGEEETTEEEEEECCC
T ss_pred -cCCCEeCCeEEEEecCC
Confidence 99988887777776554
No 202
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.09 E-value=1.5e-10 Score=102.43 Aligned_cols=84 Identities=17% Similarity=0.147 Sum_probs=66.1
Q ss_pred cceeEEEecCC--Cc---CcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHH
Q 009552 287 QSRIVVAENLP--ED---HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAE 361 (532)
Q Consensus 287 ~~rtVyV~nLP--~d---~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~Ae 361 (532)
.+++|++.|+- .+ ..+++|++.|++||.|.+|.|+++..... .....+||+||+|++.++|+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~-------------~~~~~~G~~FV~F~~~e~A~ 85 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEE-------------EDAEIIVKIFVEFSIASETH 85 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSS-------------TTCEEEEEEEEEESSHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcc-------------cCCcceEEEEEEECCHHHHH
Confidence 57899999983 22 24689999999999999999987632100 00113789999999999999
Q ss_pred HHHHHHcCCCCCCCceEEEEee
Q 009552 362 KAIAELNDEGNWRSGLRVRLML 383 (532)
Q Consensus 362 kAv~~Ln~~~~~~~glrV~l~~ 383 (532)
+|++.||+..+.++.|+|.+..
T Consensus 86 ~Ai~~LnGr~f~GR~i~v~~~~ 107 (118)
T 3ue2_A 86 KAIQALNGRWFAGRKVVAEVYD 107 (118)
T ss_dssp HHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHCCCEECCcEEEEEEcC
Confidence 9999999999888888888764
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.08 E-value=1.1e-10 Score=121.35 Aligned_cols=64 Identities=22% Similarity=0.314 Sum_probs=56.8
Q ss_pred cceeEEEec--CCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHH
Q 009552 287 QSRIVVAEN--LPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (532)
Q Consensus 287 ~~rtVyV~n--LP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv 364 (532)
.+++|||+| |+.++|+++|+++|++||+|++|+|.. +||||||+|++.|+|++|+
T Consensus 17 ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----------------------~kgfaFV~f~~~~~A~~Ai 73 (345)
T 3tht_A 17 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----------------------NKPYSFARYRTTEESKRAY 73 (345)
T ss_dssp CCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----------------------TCSEEEEEESSHHHHHHHH
T ss_pred CCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----------------------CCCEEEEEECCHHHHHHHH
Confidence 567999999 578999999999999999999988721 2789999999999999999
Q ss_pred HHHcCCCCC
Q 009552 365 AELNDEGNW 373 (532)
Q Consensus 365 ~~Ln~~~~~ 373 (532)
+.||+..+.
T Consensus 74 ~~lnG~~~~ 82 (345)
T 3tht_A 74 VTLNGKEVV 82 (345)
T ss_dssp HHTTTCEEE
T ss_pred HHhCCCccc
Confidence 999998763
No 204
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.06 E-value=8.1e-11 Score=101.58 Aligned_cols=71 Identities=20% Similarity=0.261 Sum_probs=55.0
Q ss_pred EecCCCcCcHHHHHHHh------------hhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHH
Q 009552 293 AENLPEDHCHQNLMKIF------------SAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELA 360 (532)
Q Consensus 293 V~nLP~d~t~edL~elF------------s~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~A 360 (532)
+.||+.++++++|+++| ++||.|..|+|+++.. + ..+|||||+|++.++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-----------~-------~~~G~~fV~f~~~~~A 81 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-----------D-------HLVGNVYVKFRREEDA 81 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-----------S-------SSEEEEEEEESCHHHH
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-----------C-------CccEEEEEEECCHHHH
Confidence 44555555666555554 9999999999976421 1 2389999999999999
Q ss_pred HHHHHHHcCCCCCCCceEEEE
Q 009552 361 EKAIAELNDEGNWRSGLRVRL 381 (532)
Q Consensus 361 ekAv~~Ln~~~~~~~glrV~l 381 (532)
++|++.||+..+.++.|+|.+
T Consensus 82 ~~A~~~lng~~~~Gr~i~v~~ 102 (104)
T 1jmt_A 82 EKAVIDLNNRWFNGQPIHAEL 102 (104)
T ss_dssp HHHHHHHTTCEETTEECCEEE
T ss_pred HHHHHHHCCCEECCEEEEEEE
Confidence 999999999988888887765
No 205
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=1.4e-09 Score=93.54 Aligned_cols=64 Identities=17% Similarity=0.203 Sum_probs=53.2
Q ss_pred CcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHHcCCCCCCCce
Q 009552 298 EDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGL 377 (532)
Q Consensus 298 ~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~Ln~~~~~~~gl 377 (532)
.++++++|+++|++||.|..|+|+. ..||||||+|++.++|++||+.+++ +.++.|
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~----------------------~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l 82 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS----------------------KKPGTAVVEFATVKAAELAVQNEVG--LVDNPL 82 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES----------------------SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc----------------------CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeE
Confidence 5689999999999999999999962 1278999999999999999997553 557788
Q ss_pred EEEEeeec
Q 009552 378 RVRLMLRR 385 (532)
Q Consensus 378 rV~l~~k~ 385 (532)
+|.++..+
T Consensus 83 ~V~~a~~~ 90 (100)
T 2d9o_A 83 KISWLEGQ 90 (100)
T ss_dssp EEECSSCC
T ss_pred EEEEccCC
Confidence 88876543
No 206
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.99 E-value=1.1e-09 Score=96.40 Aligned_cols=77 Identities=13% Similarity=0.101 Sum_probs=62.6
Q ss_pred ccceeEEEecCC--Cc--------CcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeC
Q 009552 286 LQSRIVVAENLP--ED--------HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYE 355 (532)
Q Consensus 286 ~~~rtVyV~nLP--~d--------~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFe 355 (532)
+.+++|++.|+= .+ ..+++|++.|++||.|..|.|.++. .+||+||+|+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---------------------~~G~~fV~f~ 63 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---------------------AQGNVYVKCP 63 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---------------------TTCCEEEECS
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---------------------CcEEEEEEEC
Confidence 356788888882 22 1246899999999999999995421 2789999999
Q ss_pred CHHHHHHHHHHHcCCCCCCCceEEEEee
Q 009552 356 SVELAEKAIAELNDEGNWRSGLRVRLML 383 (532)
Q Consensus 356 t~E~AekAv~~Ln~~~~~~~glrV~l~~ 383 (532)
+.++|++|++.||+..+.++.|+|.+..
T Consensus 64 ~~e~A~~Ai~~lnG~~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 64 SIAAAIAAVNALHGRWFAGKMITAAYVP 91 (114)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CHHHHHHHHHHhCCCEECCEEEEEEEEc
Confidence 9999999999999999988888888864
No 207
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.93 E-value=3e-09 Score=94.74 Aligned_cols=75 Identities=13% Similarity=0.157 Sum_probs=61.7
Q ss_pred ccceeEEEecCCCc-CcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCC-HHHHHHH
Q 009552 286 LQSRIVVAENLPED-HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES-VELAEKA 363 (532)
Q Consensus 286 ~~~rtVyV~nLP~d-~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet-~E~AekA 363 (532)
...+.|||+||+.+ ++.++|+++|+.||+|+.|.+.++. -+|||+|.+ .++|++|
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~-----------------------~tgfVrf~~~~~~A~~a 72 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA-----------------------KEGIILFKEKAKEALGK 72 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC-----------------------SEEEEEESSCHHHHHHH
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-----------------------CEEEEEECCChHHHHHH
Confidence 36789999999999 9999999999999999999996542 269999999 8999999
Q ss_pred HHHHcCCC--CCCCceEEEEee
Q 009552 364 IAELNDEG--NWRSGLRVRLML 383 (532)
Q Consensus 364 v~~Ln~~~--~~~~glrV~l~~ 383 (532)
++.||+.. +.+.-++++++.
T Consensus 73 v~~ln~~~~~i~g~~~~~evL~ 94 (121)
T 1owx_A 73 AKDANNGNLQLRNKEVTWEVLE 94 (121)
T ss_dssp HHHTTTSCBCTTSSSEEEEECC
T ss_pred HHHhhcCCcEEeCcEEEEEECC
Confidence 99997544 344456666654
No 208
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.64 E-value=5.4e-08 Score=82.31 Aligned_cols=74 Identities=18% Similarity=0.215 Sum_probs=59.9
Q ss_pred eeEEEecCCC----c-Cc---HHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHH
Q 009552 289 RIVVAENLPE----D-HC---HQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELA 360 (532)
Q Consensus 289 rtVyV~nLP~----d-~t---~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~A 360 (532)
-||+|.-++. + .. ..+|.+.|+.||+|..|||..+ .+||+|++.++|
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d-------------------------~~fVtF~d~~sA 62 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED-------------------------KMWVTFLEGSSA 62 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS-------------------------SEEEEESSHHHH
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC-------------------------CEEEEECChHHH
Confidence 4677765541 1 12 4689999999999999999643 389999999999
Q ss_pred HHHHHHHcCCCCCCCceEEEEeeecCCC
Q 009552 361 EKAIAELNDEGNWRSGLRVRLMLRRGSK 388 (532)
Q Consensus 361 ekAv~~Ln~~~~~~~glrV~l~~k~~~k 388 (532)
.+|++ ||+..+.++.|+|.+..+.+.+
T Consensus 63 laAi~-mnG~~v~Gr~LkV~lkt~dW~~ 89 (91)
T 2dnr_A 63 LNVLS-LNGKELLNRTITIALKSPSGPS 89 (91)
T ss_dssp HHGGG-GTTCEETTEEEEEEECCCSSCS
T ss_pred HHHHh-cCCeEeCCeEEEEEeCCCCccc
Confidence 99998 9999999999999988776654
No 209
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.43 E-value=4.6e-07 Score=87.09 Aligned_cols=71 Identities=14% Similarity=0.072 Sum_probs=57.9
Q ss_pred CcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHHcCCCCCCCceEE
Q 009552 300 HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRV 379 (532)
Q Consensus 300 ~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~Ln~~~~~~~glrV 379 (532)
...++|.+.|++||+|.+|.|+++...+. .....+|++||+|++.++|++|++.||+..+.++.|++
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~-------------~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~ 207 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEE-------------EDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVA 207 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSS-------------TTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcc-------------cCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEE
Confidence 45679999999999999999986542211 01123789999999999999999999999999999998
Q ss_pred EEee
Q 009552 380 RLML 383 (532)
Q Consensus 380 ~l~~ 383 (532)
.+..
T Consensus 208 ~~~~ 211 (222)
T 3dxb_A 208 EVYD 211 (222)
T ss_dssp EECC
T ss_pred EEcC
Confidence 8764
No 210
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.32 E-value=4.7e-07 Score=77.03 Aligned_cols=69 Identities=12% Similarity=0.142 Sum_probs=56.2
Q ss_pred ceeEEEecCCCc------Cc---HHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHH
Q 009552 288 SRIVVAENLPED------HC---HQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVE 358 (532)
Q Consensus 288 ~rtVyV~nLP~d------~t---~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E 358 (532)
.-||+|.-++.+ .. ..+|.+.|+.||+|..|||..+ -+||+|.+.+
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d-------------------------~~fVtF~d~~ 69 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG-------------------------QMLVTFADSH 69 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT-------------------------EEEEECSCSH
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC-------------------------cEEEEEcChH
Confidence 458888876532 12 3579999999999999999754 2999999999
Q ss_pred HHHHHHHHHcCCCCCCCceEEEEe
Q 009552 359 LAEKAIAELNDEGNWRSGLRVRLM 382 (532)
Q Consensus 359 ~AekAv~~Ln~~~~~~~glrV~l~ 382 (532)
+|.+||+ ||+..+.++.|+|.+.
T Consensus 70 sAl~AI~-ldG~~v~Gr~L~V~~k 92 (95)
T 1ufw_A 70 SALSVLD-VDGMKVKGRAVKISGP 92 (95)
T ss_dssp HHHHHHH-GGGSEETTEEEEEECC
T ss_pred HHHHHHh-cCCeeeCCeEEEEecc
Confidence 9999998 9999988888887754
No 211
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.48 E-value=0.00028 Score=61.53 Aligned_cols=72 Identities=11% Similarity=0.084 Sum_probs=62.4
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhc-----CCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAV-----GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAE 361 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~f-----G~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~Ae 361 (532)
..|||-+-|||..++..-|+.|.+.+ |.|+.|-++-| .+-|+|||++..+|-
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD-----------------------H~GAivef~d~~~Ag 76 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD-----------------------FNGAIIIFRDSKFAA 76 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT-----------------------TTEEEEECSCHHHHH
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC-----------------------CCceEEEEccchhhH
Confidence 36899999999999999999999999 99999988643 335999999999999
Q ss_pred HHHHHHcCCCCCCCceEEEE
Q 009552 362 KAIAELNDEGNWRSGLRVRL 381 (532)
Q Consensus 362 kAv~~Ln~~~~~~~glrV~l 381 (532)
||.-.|++..+.++.|++.-
T Consensus 77 KasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 77 KMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp HHHHHHSSEEETTEEEEEEC
T ss_pred HHHhhcCCeeecCeEEEecC
Confidence 99999999998877666553
No 212
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.39 E-value=0.017 Score=49.76 Aligned_cols=68 Identities=19% Similarity=0.185 Sum_probs=51.1
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhc-----CCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAV-----GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAE 361 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~f-----G~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~Ae 361 (532)
..++|.|+|||.++.++.|+-+|+.- |+|..|.... +.|+|+|.+.+.|+
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-------------------------~~AvItF~d~~va~ 61 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-------------------------CGGVLTFREPADAE 61 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-------------------------TEEEEEESSHHHHH
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-------------------------CcEEEEEcChHHHH
Confidence 34689999999999999999999872 5899888631 36999999999999
Q ss_pred HHHHHHcCCCCCCCceEEE
Q 009552 362 KAIAELNDEGNWRSGLRVR 380 (532)
Q Consensus 362 kAv~~Ln~~~~~~~glrV~ 380 (532)
+.|+. ....+.+-.|.|.
T Consensus 62 rVL~k-~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 62 RVLAQ-ADHELHGAQLSLR 79 (104)
T ss_dssp HHHTC-SCCBSSSSBCEEE
T ss_pred HHhcC-CcceecCeEEEEE
Confidence 98863 1223333344444
No 213
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.33 E-value=0.0049 Score=53.15 Aligned_cols=72 Identities=13% Similarity=0.123 Sum_probs=58.8
Q ss_pred eeEEEecCCCcC-c---H-HHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHH
Q 009552 289 RIVVAENLPEDH-C---H-QNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (532)
Q Consensus 289 rtVyV~nLP~d~-t---~-edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekA 363 (532)
.||+|.||+.++ . . +.++++|..|+.+.....++- | + -..|.|.+.|+|.+|
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS--------------------F--R-Rirv~F~~~~~A~~A 62 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS--------------------F--K-RVRINFSNPLSAADA 62 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT--------------------T--T-EEEEECSSTTHHHHH
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc--------------------c--e-EEEEEeCChHHHHHH
Confidence 589999998765 2 2 578999999999888776521 1 1 378999999999999
Q ss_pred HHHHcCCCCCCCceEEEEee
Q 009552 364 IAELNDEGNWRSGLRVRLML 383 (532)
Q Consensus 364 v~~Ln~~~~~~~glrV~l~~ 383 (532)
-..|++..+.+..|+|++..
T Consensus 63 R~~Lh~~~f~g~~~r~YFgq 82 (104)
T 1wey_A 63 RLRLHKTEFLGKEMKLYFAQ 82 (104)
T ss_dssp HHTSTTSEETTEECEEECCC
T ss_pred HHHhccceecCceeEEEecC
Confidence 99999999888888888765
No 214
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.27 E-value=0.0088 Score=51.04 Aligned_cols=63 Identities=19% Similarity=0.322 Sum_probs=47.3
Q ss_pred eEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHHcC
Q 009552 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (532)
Q Consensus 290 tVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~Ln~ 369 (532)
.+++ +||.+....||+++|+.||-|.--.| - -..|||.|.+.+.|..|++.++.
T Consensus 18 Vf~l-~FP~ewKt~DI~~lFs~fggv~I~Wi-d------------------------DTsAlvvf~~~~~a~~al~~i~k 71 (100)
T 1whv_A 18 VLHV-TFPKEWKTSDLYQLFSAFGNIQISWI-D------------------------DTSAFVSLSQPEQVQIAVNTSKY 71 (100)
T ss_dssp EEEE-ECCTTCCHHHHHHHHTTTCSCCCEEE-E------------------------TTEEEEECSCHHHHHHHHHHHHH
T ss_pred EEEE-eCChhhhhHHHHHHhhccCCEEEEEE-c------------------------CCeEEEEecCHHHHHHHHHhccc
Confidence 4555 99999999999999999996543333 1 22799999999999999997752
Q ss_pred CCCCCCceEEEEe
Q 009552 370 EGNWRSGLRVRLM 382 (532)
Q Consensus 370 ~~~~~~glrV~l~ 382 (532)
. ...+|+..
T Consensus 72 ~----~~y~i~ty 80 (100)
T 1whv_A 72 A----ESYRIQTY 80 (100)
T ss_dssp C----CSSEEEEH
T ss_pred C----CceEEEEh
Confidence 2 23555554
No 215
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.74 E-value=0.011 Score=50.62 Aligned_cols=54 Identities=22% Similarity=0.321 Sum_probs=42.7
Q ss_pred eEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHHc
Q 009552 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (532)
Q Consensus 290 tVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~Ln 368 (532)
-||+-+||.+....||+++|+.||-|.--.| - -..|||.|.+.+.|..|++.++
T Consensus 7 HV~~l~FP~ewKt~Di~~lFs~fggv~I~Wi-d------------------------DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHVTFPKEWKTSDLYQLFSAFGNIQISWI-D------------------------DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEECCTTCCHHHHHHHTTTSEEEEEEEE-E------------------------TTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEEeCChhhhhHHHHHHHhccCCEEEEEE-c------------------------CCeEEEEecCHHHHHHHHHhcc
Confidence 3444499999999999999999994432233 1 2279999999999999999875
No 216
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.73 E-value=0.028 Score=49.57 Aligned_cols=69 Identities=13% Similarity=0.159 Sum_probs=52.4
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
..+.|.|-+||.+. ...|...|++||+|..... +. +..+..|.|++..+|++||.
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~--~~---------------------~~NWihI~Y~s~~~A~rAL~- 77 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM--SN---------------------TGNWMHIRYQSKLQARKALS- 77 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE--CS---------------------SSSEEEEEESSHHHHHHHHT-
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc--CC---------------------CCCeEEEEeCCHHHHHHHHH-
Confidence 46788999998875 6778889999999988875 21 14589999999999999997
Q ss_pred HcCCCCCCCceEEEE
Q 009552 367 LNDEGNWRSGLRVRL 381 (532)
Q Consensus 367 Ln~~~~~~~glrV~l 381 (532)
.|+..+.+ ++-|.+
T Consensus 78 kNG~ii~g-~~mIGV 91 (119)
T 1wwh_A 78 KDGRIFGE-SIMIGV 91 (119)
T ss_dssp TTTCEETT-TEECEE
T ss_pred hCCeEecC-CEEEEE
Confidence 57665532 344444
No 217
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.52 E-value=0.0065 Score=65.23 Aligned_cols=57 Identities=23% Similarity=0.218 Sum_probs=41.8
Q ss_pred hccceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHH
Q 009552 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (532)
Q Consensus 285 ~~~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv 364 (532)
+...|+|||. ++.+.++.+|.++|++||.|.++-+-.+ . +.||.|||.+.+++..++
T Consensus 50 ~qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~----------------~------g~~~~vef~~~~~~~~~~ 106 (464)
T 3pq1_A 50 EQAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES----------------F------GLYAVVEFCQKESIGSLQ 106 (464)
T ss_dssp HHHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS----------------S------SEEEEEECC---CCHHHH
T ss_pred HHhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc----------------C------CeEEEEEeCCHHHHHHHH
Confidence 3456899998 7999999999999999999999987321 1 359999999999988775
No 218
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=94.90 E-value=0.069 Score=44.91 Aligned_cols=68 Identities=13% Similarity=0.067 Sum_probs=51.9
Q ss_pred eEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHHcC
Q 009552 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (532)
Q Consensus 290 tVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~Ln~ 369 (532)
.|+|++||...|++++.+.++.+.++...+.+.-+.+. +. .. -.-|||.|.+.|++....+.+++
T Consensus 3 KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~----------~~--~~---~SRaYi~f~~~e~v~~f~~~~~g 67 (91)
T 1uw4_A 3 KVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSL----------YP--HM---YARAYINFKNQEDIILFRDRFDG 67 (91)
T ss_dssp EEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSS----------TT--CC---CEEEEEEESSSHHHHHHHHHHTT
T ss_pred EEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCC----------CC--Cc---ceEEEEEeCCHHHHHHHHHHhCC
Confidence 58999999999999999999999887777665322110 00 00 23599999999999999999987
Q ss_pred CCC
Q 009552 370 EGN 372 (532)
Q Consensus 370 ~~~ 372 (532)
..+
T Consensus 68 ~~F 70 (91)
T 1uw4_A 68 YVF 70 (91)
T ss_dssp CEE
T ss_pred cEE
Confidence 643
No 219
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=93.11 E-value=0.052 Score=48.52 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=22.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHcCCC
Q 009552 347 KLHAFVEYESVELAEKAIAELNDEG 371 (532)
Q Consensus 347 KG~AFVEFet~E~AekAv~~Ln~~~ 371 (532)
+||+||+|.+.++|++|++.+++..
T Consensus 13 ~G~~fV~f~~~~~A~~al~~~~~~~ 37 (158)
T 2kn4_A 13 KGETTTEAVDAATAEKVFKQYANDN 37 (158)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHhHHHHHHhhcccC
Confidence 8999999999999999999988643
No 220
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=90.47 E-value=0.32 Score=41.32 Aligned_cols=68 Identities=10% Similarity=0.085 Sum_probs=45.2
Q ss_pred eeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHHc
Q 009552 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (532)
Q Consensus 289 rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~Ln 368 (532)
-.|+|+.||...|++++.+.++.+=++.....+ + ++ ... +. .. -.-|||.|.+.|+.....+.++
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv-~---G~-----~s~-~~--~~---~SRAYI~F~~~edv~~F~~~f~ 74 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFF-A---AD-----LSL-YP--HL---YSRAYINFRNPDDILLFRDRFD 74 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCC-C---CC-----SSS-CC--SC---CCCCEEEESCHHHHHHHHHHST
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEe-C---Cc-----cCC-CC--Cc---ceEEEEEeCCHHHHHHHHHHcC
Confidence 468999999999999988877765443322221 1 11 000 10 11 1249999999999999999888
Q ss_pred CCC
Q 009552 369 DEG 371 (532)
Q Consensus 369 ~~~ 371 (532)
+..
T Consensus 75 g~~ 77 (97)
T 2l08_A 75 GYI 77 (97)
T ss_dssp TEE
T ss_pred CcE
Confidence 653
No 221
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=90.32 E-value=0.12 Score=45.88 Aligned_cols=35 Identities=23% Similarity=0.077 Sum_probs=30.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHH-cCCCCCCCceEEEEe
Q 009552 347 KLHAFVEYESVELAEKAIAEL-NDEGNWRSGLRVRLM 382 (532)
Q Consensus 347 KG~AFVEFet~E~AekAv~~L-n~~~~~~~glrV~l~ 382 (532)
+|+++|||.+.++|++|++.| |+..+++ .|++...
T Consensus 13 ~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a 48 (150)
T 2i2y_A 13 KGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDA 48 (150)
T ss_dssp CEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETT
T ss_pred cccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccc
Confidence 789999999999999999999 8888777 6666643
No 222
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=90.25 E-value=0.21 Score=44.70 Aligned_cols=80 Identities=13% Similarity=0.105 Sum_probs=46.5
Q ss_pred eeEEEecCCCcCcHHHHHHHhhhcCCeeE-EEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHH
Q 009552 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKT-IRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (532)
Q Consensus 289 rtVyV~nLP~d~t~edL~elFs~fG~V~~-Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~L 367 (532)
..|.|=+||.+.+ ..|.+.|++||.|.. +.+.++.. ..... ..+..+. ..|.+..+..|.|++..+|.+||. .
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~-~~~~~-~~~~k~y--P~f~g~NWikItYds~~~A~rAL~-~ 81 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQ-AMTVG-LQDRQFV--PIFSGNSWTKITYDNPASAVDALL-E 81 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-------------CC--CCCEETTEEEEEBSSHHHHHHHHT-T
T ss_pred eEEEEEecCHHHH-HHHHHHHHhhceEeeecccccccc-ccccc-ccccccc--CccCCCcEEEEEcCCHHHHHHHHH-h
Confidence 4577778976654 457778999999855 22211000 00000 0001111 223346789999999999999997 6
Q ss_pred cCCCCCC
Q 009552 368 NDEGNWR 374 (532)
Q Consensus 368 n~~~~~~ 374 (532)
|+..+.+
T Consensus 82 NG~ii~G 88 (132)
T 3p3d_A 82 NGAVFNG 88 (132)
T ss_dssp TTCEETT
T ss_pred CCeEeCc
Confidence 7766544
No 223
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=88.15 E-value=1.1 Score=48.44 Aligned_cols=56 Identities=20% Similarity=0.312 Sum_probs=44.0
Q ss_pred eeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHHc
Q 009552 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (532)
Q Consensus 289 rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~Ln 368 (532)
..++|+ |+......+|+++|+.||.|.-.+| - ..+|||.|.+.|.|..+++.++
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v~V~wi-d------------------------dt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNIQISWI-D------------------------DTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCCEEEEC-S------------------------SSEEEEECSCHHHHHHHHHHHT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCEEEEEE-c------------------------CCeEEEEECCHHHHHHHHHHHH
Confidence 455555 9998899999999999996543333 1 2379999999999999999986
Q ss_pred CC
Q 009552 369 DE 370 (532)
Q Consensus 369 ~~ 370 (532)
..
T Consensus 495 ~~ 496 (507)
T 3d45_A 495 YA 496 (507)
T ss_dssp TC
T ss_pred hC
Confidence 43
No 224
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=86.77 E-value=0.46 Score=54.64 Aligned_cols=89 Identities=24% Similarity=0.330 Sum_probs=64.9
Q ss_pred CCChHHHHHHHhccccccCCCcccccHHHHhh----hccC--CCCceecccccch-hhHHHhhhc------------HHH
Q 009552 192 GLNDESIQKVLNQVEYYFSDLNLATTDHLIRF----ILKD--PEGYVPISTVASF-KKIKAIISS------------HSH 252 (532)
Q Consensus 192 ~~~~e~~~kI~kQvEyYFSD~NL~~D~fL~~~----i~kd--~dG~Vpi~~i~sF-kKmK~Lt~d------------~~~ 252 (532)
..++|.-+.|+..|+|.|+|+-|.-..=|... +..+ -.|.||+.+|+.+ -|+..+.+- .++
T Consensus 102 ~~~~~~~~~~~~~~~~~f~~e~~~~~~pl~~h~~~~~~r~~~~~~~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~~ 181 (950)
T 3htx_A 102 LTVDEARDEIVGRIKYIFSDEFLSAEHPLGAHLRAALRRDGERCGSVPVSVIATVDAKINSRCKIINPSVESDPFLAISY 181 (950)
T ss_dssp CCHHHHHHHHHHHHHHHTSTGGGGCSSTHHHHHHHHHTSCGGGTTEECHHHHHHTCHHHHHHHHHHCTHHHHCTHHHHHH
T ss_pred cchhhHHHHHHHHHHHHhhhhhhhccCchHHHHHHHHhhcCccccccchhhheehhhhhhhhhhhcCcccccChHHHHHH
Confidence 33478889999999999999988776655444 3444 5799999999998 355554442 246
Q ss_pred HHHhhhcCCceEEeeccceeeccCCCcch
Q 009552 253 LASVLRKSSKLVVSEDGKKIKRQNPLTES 281 (532)
Q Consensus 253 I~eALr~S~~LeVsedg~kVRR~~pl~e~ 281 (532)
|..|...+.-+.+++.. -|+|..|++.+
T Consensus 182 ~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 209 (950)
T 3htx_A 182 VMKAAAKLADYIVASPH-GLRRKNAYPSE 209 (950)
T ss_dssp HHHHHHHCCSSEEEETT-EEEESSCCCHH
T ss_pred HHHHhhcCCCcEEeCCc-ccccCCCCCHH
Confidence 66677766555577777 99999998853
No 225
>2v8f_C MDIA1, profilin IIA; alternative splicing, protein-binding, cytoplasm, acetylation, cytoskeleton, actin-binding; 1.1A {Mus musculus}
Probab=85.22 E-value=0.55 Score=29.81 Aligned_cols=8 Identities=25% Similarity=0.679 Sum_probs=3.1
Q ss_pred CCCCCCCC
Q 009552 80 PPAAAMVH 87 (532)
Q Consensus 80 pp~~~~~~ 87 (532)
||.+++..
T Consensus 5 PplPg~~g 12 (26)
T 2v8f_C 5 PPLPGVAS 12 (26)
T ss_pred CCCCCCCC
Confidence 33334443
No 226
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR {Homo sapiens} PDB: 2l4i_A 2lm5_A
Probab=80.59 E-value=0.25 Score=46.39 Aligned_cols=46 Identities=13% Similarity=0.210 Sum_probs=25.7
Q ss_pred CCChHHHHHHHhccccccCCCcccccHHHHhhhcc-----CC-C--Cceecccccc
Q 009552 192 GLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILK-----DP-E--GYVPISTVAS 239 (532)
Q Consensus 192 ~~~~e~~~kI~kQvEyYFSD~NL~~D~fL~~~i~k-----d~-d--G~Vpi~~i~s 239 (532)
.++++.++++++.. +|+...+..=.-+...+.. +. + |+|...-|..
T Consensus 30 ~l~~e~l~~l~~~t--~~s~~ei~~l~~~F~~~D~~~~~~d~~~~dG~I~~~E~~~ 83 (214)
T 2l4h_A 30 RLSKELLAEYQDLT--FLTKQEILLAHRRFCELLPQEQRSVESSLRAQVPFEQILS 83 (214)
T ss_dssp -CCHHHHHHHHSCC--SCCHHHHHHHHHHHHHHSCGGGCCHHHHTTSEECHHHHTT
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCcccccccccccCCcCCHHHHHH
Confidence 47777777777763 4565555431122333322 22 5 9998887776
No 227
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=70.86 E-value=0.86 Score=39.88 Aligned_cols=8 Identities=0% Similarity=-0.010 Sum_probs=4.2
Q ss_pred EEEEEeCC
Q 009552 349 HAFVEYES 356 (532)
Q Consensus 349 ~AFVEFet 356 (532)
-.||...+
T Consensus 65 I~~I~~pd 72 (119)
T 1b34_A 65 IRYFILPD 72 (119)
T ss_dssp EEEEECCT
T ss_pred EEEEEecc
Confidence 35555554
No 228
>1wfx_A Probable RNA 2'-phosphotransferase; tRNA splicing, NAD, structural GE riken structural genomics/proteomics initiative, RSGI; 2.80A {Aeropyrum pernix} SCOP: d.166.1.5
Probab=68.66 E-value=4.2 Score=38.31 Aligned_cols=81 Identities=16% Similarity=0.167 Sum_probs=48.4
Q ss_pred hccCCCCceecccccchhhHH--HhhhcHHHHHHhhhcCCc--eEEeeccceeeccCC--Cc-chhhhh-ccceeEEEec
Q 009552 224 ILKDPEGYVPISTVASFKKIK--AIISSHSHLASVLRKSSK--LVVSEDGKKIKRQNP--LT-ESDLEE-LQSRIVVAEN 295 (532)
Q Consensus 224 i~kd~dG~Vpi~~i~sFkKmK--~Lt~d~~~I~eALr~S~~--LeVsedg~kVRR~~p--l~-e~d~~~-~~~rtVyV~n 295 (532)
+..|++|||+|+.|+. -+.+ ...-+.+.|.+++.++.+ .+++. .+||-.+- +. +.+.+. .....||
T Consensus 22 L~ld~~G~v~v~~LL~-~~~~~~~~~~t~~~l~~vV~~~~K~Rf~l~~--~~IRA~qGHSi~V~~~l~~~~~P~~ly--- 95 (186)
T 1wfx_A 22 VRLTREGWARVSEVVE-GLRKAGWSWVEEWHIVGVALHDPKGRYELRN--GEIRARYGHSIPVNVEPLPGEPPPILY--- 95 (186)
T ss_dssp CCCCTTCCEEHHHHHH-HHHHTTCTTCCHHHHHHHHHHCSSCCEEEET--TEEEESSCCSSCCCCCCCSSCCCSEEE---
T ss_pred CccCCCCCEEHHHHHh-hhhhcccCCCCHHHHHHHHhcCCCCceEeec--cEEEeccCCCCcccccCCcCCCCCEEE---
Confidence 4578999999999998 3333 233467778888876654 55654 47766542 21 111111 1113444
Q ss_pred CCCcCcHHHHHHHhhhcC
Q 009552 296 LPEDHCHQNLMKIFSAVG 313 (532)
Q Consensus 296 LP~d~t~edL~elFs~fG 313 (532)
..+..+.+..|++. |
T Consensus 96 --HGT~~~~~~~I~~~-G 110 (186)
T 1wfx_A 96 --HGTTEEALPLIMER-G 110 (186)
T ss_dssp --ECCBGGGHHHHHHH-C
T ss_pred --EeCCHHHHHHHHHh-C
Confidence 45677888888776 5
No 229
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=65.55 E-value=2.6 Score=35.57 Aligned_cols=18 Identities=11% Similarity=0.036 Sum_probs=0.0
Q ss_pred cceeEEEecCCCcCcHHH
Q 009552 287 QSRIVVAENLPEDHCHQN 304 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~ed 304 (532)
...+|||+|||.++|++.
T Consensus 96 ~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 96 EFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp ------------------
T ss_pred CCCceEeCCCCCCccccc
Confidence 456799999999998864
No 230
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC, hydrolase; 1.80A {Homo sapiens}
Probab=54.68 E-value=6.2 Score=35.72 Aligned_cols=46 Identities=20% Similarity=0.200 Sum_probs=24.9
Q ss_pred CCCCChHHHHHHHhcc------ccccCCCcccccHHHHhhhccCCCCceeccccc
Q 009552 190 HGGLNDESIQKVLNQV------EYYFSDLNLATTDHLIRFILKDPEGYVPISTVA 238 (532)
Q Consensus 190 ~~~~~~e~~~kI~kQv------EyYFSD~NL~~D~fL~~~i~kd~dG~Vpi~~i~ 238 (532)
...++.+.+..+++.+ -+-|+.+.+ ..|++.+..+.+|.|.+.-++
T Consensus 18 dG~I~~~EL~~~l~~l~~~~~~g~~~~~~~~---~~l~~~~D~d~~G~I~f~EF~ 69 (174)
T 2i7a_A 18 GSDIDATQLQGLLNQELLTGPPGDMFSLDEC---RSLVALMELKVNGRLDQEEFA 69 (174)
T ss_dssp CCCEEHHHHHHHHHHHHC-----CCCCHHHH---HHHHHHHCSSCSSEECHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhccCCCCCCCHHHH---HHHHHHHCCCCCCcCCHHHHH
Confidence 3445555555666655 122332222 236666777888988765544
No 231
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=51.47 E-value=11 Score=38.86 Aligned_cols=23 Identities=13% Similarity=0.288 Sum_probs=19.0
Q ss_pred eeEEEecCCCcCcHHHHHHHhhh
Q 009552 289 RIVVAENLPEDHCHQNLMKIFSA 311 (532)
Q Consensus 289 rtVyV~nLP~d~t~edL~elFs~ 311 (532)
...+|.|||++++..-|..++..
T Consensus 143 ~~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 143 KFLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEEECCSTTHHHHHHHHHHH
T ss_pred ceEEEEECCCchHHHHHHHHHHh
Confidence 46799999999998877777764
No 232
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=51.44 E-value=23 Score=35.63 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=18.3
Q ss_pred eeEEEecCCC----cCcHHHHHHHhhhcCCeeEEEE
Q 009552 289 RIVVAENLPE----DHCHQNLMKIFSAVGSVKTIRT 320 (532)
Q Consensus 289 rtVyV~nLP~----d~t~edL~elFs~fG~V~~Vri 320 (532)
.-|++-|+|. +.+.+.|.++..++..|.-|+-
T Consensus 151 lPiilYn~P~~tg~~l~~~~~~~L~a~~pnIvgiKd 186 (315)
T 3na8_A 151 VPVMLYNNPGTSGIDMSVELILRIVREVDNVTMVKE 186 (315)
T ss_dssp SCEEEEECHHHHSCCCCHHHHHHHHHHSTTEEEEEE
T ss_pred CcEEEEeCcchhCcCCCHHHHHHHHhcCCCEEEEEC
Confidence 3466666663 4556666666556666655543
No 233
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=50.47 E-value=71 Score=28.79 Aligned_cols=49 Identities=2% Similarity=-0.023 Sum_probs=36.3
Q ss_pred CcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHHHcC
Q 009552 300 HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (532)
Q Consensus 300 ~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~Ln~ 369 (532)
...+++.+.+..+-+|..+..+. |.. ..++.|.+.+.++.++.++.|..
T Consensus 98 ~~~~~v~~~l~~~peV~~~~~vt--------------G~~-------d~l~~v~~~d~~~l~~~l~~l~~ 146 (171)
T 2e1c_A 98 GKYSEVASNLAKYPEIVEVYETT--------------GDY-------DMVVKIRTKNSEELNNFLDLIGS 146 (171)
T ss_dssp TCHHHHHHHHHTSTTEEEEEECS--------------SSS-------SEEEEEEESSHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhcCcCeEEEEEee--------------CCC-------CEEEEEEECCHHHHHHHHHHHhc
Confidence 45678888889998888876631 111 33788999999999998876653
No 234
>1jh4_B PAIP1, polyadenylate-binding protein-interacting protein-1; all-helical domain, protein-peptide complex, RNA binding protein; NMR {Homo sapiens} PDB: 3ntw_B
Probab=49.98 E-value=7.2 Score=24.97 Aligned_cols=17 Identities=41% Similarity=0.763 Sum_probs=14.1
Q ss_pred ccccccCCCCCCCCCCC
Q 009552 37 FSRLNAKAPEFVPTRNP 53 (532)
Q Consensus 37 ~~~~~~~~p~~~p~~~~ 53 (532)
.|+|.+.||||+|+.-.
T Consensus 3 ~S~LS~~ApeF~Psgys 19 (26)
T 1jh4_B 3 MSKLSVNAPEFYPSGYS 19 (26)
T ss_dssp CCCSSCCCSCCCCTTCC
T ss_pred ccccCcCCceeccCccc
Confidence 47888999999998754
No 235
>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*
Probab=49.45 E-value=7.2 Score=40.83 Aligned_cols=20 Identities=15% Similarity=0.321 Sum_probs=14.4
Q ss_pred ccccCCCCCChHHHHHHHhc
Q 009552 185 KKDHQHGGLNDESIQKVLNQ 204 (532)
Q Consensus 185 ~~~~~~~~~~~e~~~kI~kQ 204 (532)
+..+..-.++++...+|++.
T Consensus 34 k~~E~RValtP~~V~~L~~~ 53 (394)
T 2qrj_A 34 KPLEARAALTPTTVKKLIAK 53 (394)
T ss_dssp STTCCCCSSCHHHHHHHHHT
T ss_pred CCCCceeccCHHHHHHHHhC
Confidence 44566777888888888765
No 236
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=49.20 E-value=53 Score=24.45 Aligned_cols=56 Identities=18% Similarity=0.189 Sum_probs=42.4
Q ss_pred cceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCCHHHHHHHHHH
Q 009552 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (532)
Q Consensus 287 ~~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (532)
...++.|.++.=..+...|++.+.+ --|..+.+-.. .+.+.|+|.+.++..++|+.
T Consensus 5 ~~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~-----------------------~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 5 EKIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN-----------------------EAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS-----------------------EEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc-----------------------CCEEEEEECCHHHHHHHHHH
Confidence 3457889999888899999999999 88888888321 34578898866666666654
No 237
>1d1d_A Protein (capsid protein); two independent domains helical bundles, virus/viral protein; NMR {Rous sarcoma virus} SCOP: a.28.3.1 a.73.1.1
Probab=46.51 E-value=6.9 Score=38.78 Aligned_cols=28 Identities=18% Similarity=0.176 Sum_probs=21.4
Q ss_pred cCCCCCChHHHHHHHhccccc--cCCCccc
Q 009552 188 HQHGGLNDESIQKVLNQVEYY--FSDLNLA 215 (532)
Q Consensus 188 ~~~~~~~~e~~~kI~kQvEyY--FSD~NL~ 215 (532)
.....++..+++.+++-||-| ||.+-+.
T Consensus 31 ~~h~plspr~l~~~~k~ve~~g~~sPe~i~ 60 (262)
T 1d1d_A 31 PAWTPLEPKLITRLADTVRTKGLRSPITMA 60 (262)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCTTSSHHHH
T ss_pred CcCCCCCHHHHHHHHHHHHHcCCCChHHHH
Confidence 478899999999999999766 4666554
No 238
>2d2a_A SUFA protein; iron-sulfur cluster, iron, ISCA, YADR, metal transport; 2.70A {Escherichia coli}
Probab=41.22 E-value=8.5 Score=34.66 Aligned_cols=18 Identities=17% Similarity=0.043 Sum_probs=13.0
Q ss_pred CCCCCChHHHHHHHhccc
Q 009552 189 QHGGLNDESIQKVLNQVE 206 (532)
Q Consensus 189 ~~~~~~~e~~~kI~kQvE 206 (532)
....+++...++|++.++
T Consensus 39 m~ItiTe~Aa~~lk~ll~ 56 (145)
T 2d2a_A 39 QGLTLTPAAAIHIRELVA 56 (145)
T ss_dssp CCCEECHHHHHHHHHHHH
T ss_pred ceEEECHHHHHHHHHHHh
Confidence 446788888888877554
No 239
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=38.95 E-value=82 Score=24.21 Aligned_cols=33 Identities=12% Similarity=0.130 Sum_probs=23.8
Q ss_pred EEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEEe
Q 009552 349 HAFVEYESVELAEKAIAELNDEGNWRSGLRVRLM 382 (532)
Q Consensus 349 ~AFVEFet~E~AekAv~~Ln~~~~~~~glrV~l~ 382 (532)
|.||+-.. +.|+++++.|+.....++.++|+.+
T Consensus 42 ~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 42 ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp CEEEEECT-TCHHHHHHHHTTCCC---CCCEEEC
T ss_pred cEEEEECH-HHHHHHHHHhccccCcCceEEEEEC
Confidence 79999876 4688899999987777777777654
No 240
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=32.91 E-value=1.4e+02 Score=21.71 Aligned_cols=57 Identities=16% Similarity=0.141 Sum_probs=42.3
Q ss_pred ceeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeC----CHHHHHHH
Q 009552 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYE----SVELAEKA 363 (532)
Q Consensus 288 ~rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFe----t~E~AekA 363 (532)
..++.|.++.-..+...|++.+.+.--|..+.+-.. .+.+.|+|+ +.++..++
T Consensus 3 ~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~-----------------------~~~~~v~~~~~~~~~~~i~~~ 59 (74)
T 3dxs_X 3 KIQVGVTGMTCAACSNSVEAALMNVNGVFKASVALL-----------------------QNRADVVFDPNLVKEEDIKEE 59 (74)
T ss_dssp EEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGG-----------------------GTEEEEEECTTTCCHHHHHHH
T ss_pred EEEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEec-----------------------CCEEEEEECCCCCCHHHHHHH
Confidence 347888998877888999999999878888887321 335889995 45666677
Q ss_pred HHHH
Q 009552 364 IAEL 367 (532)
Q Consensus 364 v~~L 367 (532)
|+.+
T Consensus 60 i~~~ 63 (74)
T 3dxs_X 60 IEDA 63 (74)
T ss_dssp HHHH
T ss_pred HHHC
Confidence 6654
No 241
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=31.93 E-value=9.7 Score=39.44 Aligned_cols=12 Identities=0% Similarity=0.075 Sum_probs=6.2
Q ss_pred hHHHHHHHhccc
Q 009552 195 DESIQKVLNQVE 206 (532)
Q Consensus 195 ~e~~~kI~kQvE 206 (532)
++.+++.++.||
T Consensus 60 ~~~~~~~~~~L~ 71 (371)
T 3tla_A 60 KNRFFRGVEFLQ 71 (371)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 445555555554
No 242
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=31.15 E-value=10 Score=39.28 Aligned_cols=6 Identities=0% Similarity=0.207 Sum_probs=2.3
Q ss_pred HHHhhh
Q 009552 253 LASVLR 258 (532)
Q Consensus 253 I~eALr 258 (532)
+.+|+.
T Consensus 101 L~~af~ 106 (371)
T 3tla_A 101 FNELVY 106 (371)
T ss_dssp HHHHHT
T ss_pred HHHHhh
Confidence 333333
No 243
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=28.69 E-value=1.2e+02 Score=21.73 Aligned_cols=33 Identities=12% Similarity=0.206 Sum_probs=27.9
Q ss_pred eeEEEecCCCcCcHHHHHHHhhhcCCeeEEEEe
Q 009552 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTC 321 (532)
Q Consensus 289 rtVyV~nLP~d~t~edL~elFs~fG~V~~Vri~ 321 (532)
.++.|.|+.-..+...|++.+.+..-|..+.+-
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~ 36 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVN 36 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEE
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEE
Confidence 467889988778889999999998888888884
No 244
>4ec6_A Putative uncharacterized protein; GRAM-positive, conjugation, NTF2-like, unknown function; 2.50A {Enterococcus faecalis}
Probab=27.64 E-value=15 Score=33.76 Aligned_cols=31 Identities=19% Similarity=0.171 Sum_probs=17.8
Q ss_pred hHHHHHHHhccccccCCC-cc-cccHHHHhhhc
Q 009552 195 DESIQKVLNQVEYYFSDL-NL-ATTDHLIRFIL 225 (532)
Q Consensus 195 ~e~~~kI~kQvEyYFSD~-NL-~~D~fL~~~i~ 225 (532)
..+...++--|-+|||.. |+ .++.+|...+.
T Consensus 55 ~kvDvF~RyFLs~YfS~~~~~~~~q~~LkdFvS 87 (161)
T 4ec6_A 55 SKIDTFGRYFLTYYFSQEKNQENYQSSLRTYVS 87 (161)
T ss_dssp HHHHHHHHHHHHHHTCCCCCHHHHHHHHGGGBC
T ss_pred CcceeeehhhhHHHhCCChhhhhHHHHHHHHhh
Confidence 344445555666888865 22 44566666554
No 245
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=27.59 E-value=13 Score=35.57 Aligned_cols=9 Identities=11% Similarity=0.457 Sum_probs=4.4
Q ss_pred hccceeEEE
Q 009552 285 ELQSRIVVA 293 (532)
Q Consensus 285 ~~~~rtVyV 293 (532)
+++.++|-|
T Consensus 161 dL~gk~v~~ 169 (291)
T 2yjp_A 161 QLKDQTLLV 169 (291)
T ss_dssp GGTTSEEEE
T ss_pred HhCCCEEEE
Confidence 444555544
No 246
>3uau_A JLPA, surface-exposed lipoprotein; adhesin, bacterial cell surface, cell adhesion; 2.70A {Campylobacter jejuni subsp}
Probab=27.19 E-value=13 Score=36.94 Aligned_cols=26 Identities=27% Similarity=0.245 Sum_probs=12.9
Q ss_pred HHHHHHcCCCCCCCceEEEEeeecCCC
Q 009552 362 KAIAELNDEGNWRSGLRVRLMLRRGSK 388 (532)
Q Consensus 362 kAv~~Ln~~~~~~~glrV~l~~k~~~k 388 (532)
+|+..||+-... .-.++.+..+....
T Consensus 309 kaL~~lN~Itkd-~~YKLnL~lkFK~I 334 (379)
T 3uau_A 309 KALAILNNITQN-DDYKLNLDLKFKNI 334 (379)
T ss_dssp HHHHHHHHHTSS-SEEEEEEEEEECSC
T ss_pred HHHHHHhccccC-ccceeeeecccccc
Confidence 455556643322 23566666654443
No 247
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=25.77 E-value=14 Score=34.28 Aligned_cols=11 Identities=18% Similarity=0.407 Sum_probs=4.8
Q ss_pred chhhH-HHhhhc
Q 009552 239 SFKKI-KAIISS 249 (532)
Q Consensus 239 sFkKm-K~Lt~d 249 (532)
.|.+| .+|..|
T Consensus 49 AF~~IVtSlV~d 60 (174)
T 2oar_A 49 AFTALVTKFTDS 60 (174)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 45543 334444
No 248
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic, ER, golgi, transport, disulfide bond, endopla reticulum, ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A 3lcp_C
Probab=23.28 E-value=12 Score=32.47 Aligned_cols=16 Identities=6% Similarity=-0.083 Sum_probs=9.8
Q ss_pred HHhhhccCCCCceecc
Q 009552 220 LIRFILKDPEGYVPIS 235 (532)
Q Consensus 220 L~~~i~kd~dG~Vpi~ 235 (532)
+++.+..+.+|+|...
T Consensus 73 ~F~~~D~d~dG~I~~~ 88 (143)
T 3a4u_B 73 YFKMHDYDGNNLLDGL 88 (143)
T ss_dssp HHHHTCTTCSSCEEHH
T ss_pred HHHHhCCCCCCccCHH
Confidence 3455556778877543
No 249
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=22.89 E-value=17 Score=29.89 Aligned_cols=21 Identities=10% Similarity=0.147 Sum_probs=17.8
Q ss_pred ecCCCcCcHHHHHHHhhhcCC
Q 009552 294 ENLPEDHCHQNLMKIFSAVGS 314 (532)
Q Consensus 294 ~nLP~d~t~edL~elFs~fG~ 314 (532)
++++.+.++++|+++|++||-
T Consensus 89 ~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 89 QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp TTSCHHHHHHHHHHHHHHHCC
T ss_pred hhhhHhHhHHHHHHHHHHhCC
Confidence 466677889999999999984
No 250
>3qae_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; 4-electron oxido-reductase, oxidoreductase; HET: CIT; 2.30A {Streptococcus pneumoniae} PDB: 3qau_A
Probab=22.78 E-value=2.2e+02 Score=30.28 Aligned_cols=20 Identities=10% Similarity=0.285 Sum_probs=13.7
Q ss_pred HHHHHHHhh--------hcCCeeEEEEe
Q 009552 302 HQNLMKIFS--------AVGSVKTIRTC 321 (532)
Q Consensus 302 ~edL~elFs--------~fG~V~~Vri~ 321 (532)
.++|.+++. .||.+..|.+.
T Consensus 167 ~~~l~~~a~~~~~s~~~rgggl~~i~~~ 194 (458)
T 3qae_A 167 KAELLELANQAYPSIVKRGGGARDLHVE 194 (458)
T ss_dssp HHHHHHHHHHHCHHHHTTTCEEEEEEEE
T ss_pred HHHHHHHHHhhCchhhhcccceeEEEEE
Confidence 456666665 37899888763
No 251
>4faj_A PRGZ; substrate binding protein, peptide binding protein, pheromon extracellular, membrane anchored; 1.90A {Enterococcus faecalis}
Probab=22.54 E-value=18 Score=36.25 Aligned_cols=10 Identities=60% Similarity=1.338 Sum_probs=0.0
Q ss_pred CCCCCCCCCC
Q 009552 143 NHNHHHHRHQ 152 (532)
Q Consensus 143 ~~~~~~~~~~ 152 (532)
||+||||+||
T Consensus 2 hhhhhhhhhh 11 (564)
T 4faj_A 2 HHHHHHHHHH 11 (564)
T ss_dssp ----------
T ss_pred Cccccccccc
No 252
>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C amphipathic-helix, apoptosis, HOST-virus interaction, protein transport, transport; 2.02A {Homo sapiens} PDB: 2oew_A 3c3o_A 3c3q_A
Probab=22.45 E-value=35 Score=35.14 Aligned_cols=14 Identities=7% Similarity=0.057 Sum_probs=5.9
Q ss_pred CCCCChHHHHHHHh
Q 009552 190 HGGLNDESIQKVLN 203 (532)
Q Consensus 190 ~~~~~~e~~~kI~k 203 (532)
...+...+.+-|.+
T Consensus 35 ~vd~~~~l~~~I~~ 48 (380)
T 3c3r_A 35 EVDLAKPLVKFIQQ 48 (380)
T ss_dssp CCCCHHHHHHHHHH
T ss_pred cCChHHHHHHHHHH
Confidence 33444444444443
No 253
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=21.54 E-value=1.5e+02 Score=27.32 Aligned_cols=48 Identities=15% Similarity=0.253 Sum_probs=33.0
Q ss_pred eeEEEecCCCc---------CcHHHHHHHh--hhcCCeeEEEEeCCCCCCCCCCCCCCcccccCcccccccEEEEEeCC
Q 009552 289 RIVVAENLPED---------HCHQNLMKIF--SAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES 356 (532)
Q Consensus 289 rtVyV~nLP~d---------~t~edL~elF--s~fG~V~~Vri~~p~~~~~~~p~~~R~~k~~g~~~~~KG~AFVEFet 356 (532)
=+++|-|++.+ .+-++|++.| +.|..++ |+.++.. .+..|+|.|+|.+
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~-------------------~Gh~g~aIv~F~~ 71 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY-------------------LGHSGTAIVEFNK 71 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS-------------------SBEEEEEEEECCS
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC-------------------CCCceeEEEEecC
Confidence 36778888862 3457899977 9998766 4444321 1236789999997
No 254
>3odm_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta-barrel, lyase; 2.95A {Clostridium perfringens}
Probab=21.33 E-value=26 Score=38.09 Aligned_cols=10 Identities=20% Similarity=0.404 Sum_probs=5.5
Q ss_pred ceEEEEeeec
Q 009552 376 GLRVRLMLRR 385 (532)
Q Consensus 376 glrV~l~~k~ 385 (532)
|++|+++-.+
T Consensus 254 gI~l~lFHGR 263 (560)
T 3odm_A 254 GVTISPILGC 263 (560)
T ss_dssp TCEEEEEEEC
T ss_pred CCcEEEEeeC
Confidence 4666665543
No 255
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=21.31 E-value=20 Score=34.09 Aligned_cols=12 Identities=33% Similarity=0.772 Sum_probs=0.0
Q ss_pred CCCccCCCcccc
Q 009552 129 NYHHQQHQQHQH 140 (532)
Q Consensus 129 ~~~~~~~~~~~~ 140 (532)
+||||+||||+|
T Consensus 3 ~~~~~~~~~~~~ 14 (283)
T 2yln_A 3 HHHHHHHHHHSS 14 (283)
T ss_dssp ------------
T ss_pred cccccccccccc
Done!