Query 009553
Match_columns 532
No_of_seqs 316 out of 1684
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 07:46:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009553.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009553hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vj7_A Bifunctional RELA/SPOT; 100.0 7.5E-83 2.6E-87 667.6 24.3 289 214-519 9-302 (393)
2 3nqw_A CG11900; stringent resp 100.0 2.1E-36 7.1E-41 286.5 10.9 166 228-404 4-176 (179)
3 3nr1_A HD domain-containing pr 100.0 1.1E-34 3.7E-39 274.7 13.5 145 229-384 3-156 (178)
4 3l9d_A SMU.1046C, putative GTP 99.9 1.2E-22 4.2E-27 202.1 4.8 118 379-519 19-142 (255)
5 2be3_A GTP pyrophosphokinase; 99.5 5.1E-14 1.8E-18 137.8 7.2 64 446-519 44-113 (226)
6 2pq7_A Predicted HD superfamil 94.9 0.47 1.6E-05 44.9 14.0 50 232-284 14-68 (220)
7 3b57_A LIN1889 protein; Q92AN1 94.4 0.2 6.8E-06 47.4 10.1 55 231-288 5-64 (209)
8 3dto_A BH2835 protein; all alp 94.2 0.27 9.2E-06 47.6 10.7 54 230-286 4-62 (223)
9 2qgs_A Protein Se1688; alpha-h 93.7 0.48 1.7E-05 45.3 11.3 54 231-287 5-64 (225)
10 2pjq_A Uncharacterized protein 93.5 0.33 1.1E-05 46.7 9.8 56 228-286 7-67 (231)
11 3djb_A Hydrolase, HD family; a 93.4 0.37 1.3E-05 46.6 9.9 54 230-286 4-62 (223)
12 2paq_A 5'-deoxynucleotidase YF 91.9 0.52 1.8E-05 44.8 8.7 95 252-359 29-144 (201)
13 2ibn_A Inositol oxygenase; red 78.2 2.3 7.7E-05 42.3 5.1 53 232-284 37-90 (250)
14 3kh1_A Predicted metal-depende 72.0 8.9 0.0003 36.6 7.4 115 232-359 9-146 (200)
15 1xx7_A Oxetanocin-like protein 68.9 12 0.00039 35.2 7.3 34 253-286 36-79 (184)
16 2o08_A BH1327 protein; putativ 68.0 4.3 0.00015 37.3 4.1 33 254-286 18-55 (188)
17 2ogi_A Hypothetical protein SA 67.2 4.6 0.00016 37.5 4.1 32 255-286 27-63 (196)
18 3ccg_A HD superfamily hydrolas 62.7 6.3 0.00022 36.3 4.1 32 255-286 20-56 (190)
19 3mzo_A LIN2634 protein; HD-dom 62.2 41 0.0014 32.2 9.9 96 253-360 29-144 (216)
20 3m1t_A Putative phosphohydrola 62.0 64 0.0022 31.2 11.5 33 253-285 104-141 (275)
21 2cqz_A 177AA long hypothetical 59.1 8.5 0.00029 35.5 4.3 35 253-287 31-75 (177)
22 4dmb_A HD domain-containing pr 59.1 32 0.0011 32.9 8.5 92 252-360 43-149 (204)
23 2dqb_A Deoxyguanosinetriphosph 58.8 14 0.00046 38.6 6.2 54 232-285 48-111 (376)
24 2gz4_A Hypothetical protein AT 50.6 14 0.00046 35.7 4.3 35 253-287 54-90 (207)
25 2hek_A Hypothetical protein; p 48.8 11 0.00037 39.1 3.5 35 253-287 49-89 (371)
26 2huo_A Inositol oxygenase; pro 40.5 33 0.0011 34.7 5.4 54 231-284 75-129 (289)
27 3dfg_A Xcrecx, regulatory prot 35.3 30 0.001 31.4 3.9 69 398-468 20-98 (162)
28 3bg2_A DGTP triphosphohydrolas 35.1 29 0.001 36.9 4.3 55 230-284 35-118 (444)
29 2q14_A Phosphohydrolase; BT420 34.7 16 0.00055 38.4 2.2 32 254-285 55-99 (410)
30 3ssb_I IMPI alpha, inducible m 34.1 6.2 0.00021 27.3 -0.7 15 158-172 11-25 (32)
31 3ljc_A ATP-dependent protease 34.1 1.7E+02 0.0058 27.9 9.2 81 350-439 170-250 (252)
32 1ynb_A Hypothetical protein AF 32.2 75 0.0026 29.6 6.1 34 253-286 37-78 (173)
33 3d5l_A Regulatory protein RECX 32.1 57 0.002 31.0 5.5 69 395-468 61-143 (221)
34 3irh_A HD domain protein; phos 31.8 19 0.00066 38.8 2.2 32 254-285 86-137 (480)
35 4i1u_A Dephospho-COA kinase; s 31.7 27 0.00091 33.3 3.0 39 261-303 24-65 (210)
36 3tm8_A BD1817, uncharacterized 30.7 1.5E+02 0.0052 29.5 8.5 35 251-285 162-206 (328)
37 3u1n_A SAM domain and HD domai 30.2 21 0.00072 38.9 2.2 32 254-285 65-111 (528)
38 3hug_A RNA polymerase sigma fa 30.0 57 0.002 26.1 4.4 44 400-443 46-91 (92)
39 3gw7_A Uncharacterized protein 29.7 27 0.00092 33.9 2.7 32 256-287 27-63 (239)
40 3ldz_A STAM-1, signal transduc 29.5 1.6E+02 0.0056 25.9 7.6 38 428-468 100-139 (140)
41 2o36_A ThiMet oligopeptidase; 27.3 1E+02 0.0035 34.0 7.2 117 289-420 12-134 (674)
42 1mhq_A ADP-ribosylation factor 25.8 40 0.0014 30.3 3.0 37 428-468 102-138 (148)
43 2pgs_A Putative deoxyguanosine 25.6 48 0.0016 35.3 3.9 56 229-284 32-111 (451)
44 1deq_A Fibrinogen (alpha chain 24.9 1E+02 0.0035 32.3 6.1 8 457-464 180-187 (390)
45 3c1d_A Protein ORAA, regulator 23.4 72 0.0025 28.6 4.2 74 395-468 5-96 (159)
46 1bby_A RAP30; average structur 23.4 26 0.00089 28.3 1.1 40 394-433 6-46 (69)
47 3bzc_A TEX; helix-turn-helix, 22.9 3E+02 0.01 31.3 10.0 151 292-442 5-193 (785)
48 2p4v_A Transcription elongatio 21.7 1.3E+02 0.0045 27.3 5.6 54 388-442 9-74 (158)
49 4dnd_A Syntaxin-10, SYN10; str 21.0 87 0.003 27.8 4.1 45 389-435 75-123 (130)
50 2o3e_A Neurolysin; thermolysin 20.8 1.8E+02 0.0062 32.0 7.5 117 289-420 28-150 (678)
51 3hc1_A Uncharacterized HDOD do 20.2 1.5E+02 0.005 29.0 6.0 33 253-285 117-155 (305)
No 1
>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8
Probab=100.00 E-value=7.5e-83 Score=667.56 Aligned_cols=289 Identities=35% Similarity=0.477 Sum_probs=260.7
Q ss_pred HHHHHHHHHhhCChhhHHHHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHHhCCCHHHHHHHHhhcccccccCCHH
Q 009553 214 AKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYD 293 (532)
Q Consensus 214 ~~~Ll~~~~~~~~~~d~~ll~kA~~fA~~aH~GQ~RkSGePYI~HpleVA~ILa~Lg~D~etIaAALLHDvVEDT~vTlE 293 (532)
+++|+..+..+++..|.+++.+|+.||.++|.||+|++|+|||.||++||.||+++|+|.++++||||||++|||.+|.+
T Consensus 9 ~~~l~~~~~~~~~~~~~~~l~~A~~~A~~aH~gQ~rksGePYi~Hpl~VA~iLa~l~~D~~~i~AALLHDvvEDt~~t~e 88 (393)
T 1vj7_A 9 GEEVVALAAKYMNETDAAFVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAVTVACGFLHDVVEDTDITLD 88 (393)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCBCTTSCBTTHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHSSCCHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhccCcCCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHhhhHHhcCCCCHH
Confidence 35788888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcHHHHHHHHHhhcccccchHHhhccccchHHHHHHHHHHHhhcc-CchhhHhHHhhhHhhccccCCCCHHHHHH
Q 009553 294 YIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQR 372 (532)
Q Consensus 294 eIee~FG~eVA~LVegVTKls~l~~~~r~~~~~~~~~qAE~lRKMLLAma-DiRVVLIKLADRLhNMRtL~~lp~ekq~r 372 (532)
+|++.||++|+.||+||||+.++++..+ ...|+|++|||||||+ |+||++|||||||||||++..+++++|++
T Consensus 89 ~I~~~FG~~Va~lV~gvTk~~~~~~~~~------~~~qae~~Rkmllam~~D~RvvlIKLADRlhNmRtl~~~~~ek~~~ 162 (393)
T 1vj7_A 89 NIEFDFGKDVRDIVDGVTKLGKVEYKSH------EEQLAENHRKMLMAMSKDIRVILVKLADRLHNMRTLKHLRKDKQER 162 (393)
T ss_dssp HHHHHHCHHHHHHHHHHHHHC--------------------CCSCTTTSCCCHHHHHHHHHHHHHHHHTCC------HHH
T ss_pred HHHHHhCHHHHHHHHHHHhcccCCcccH------HHHHHHHHHHHHHhhcCCcceeeeeHHHHHHccCchhhCChHHHHH
Confidence 9999999999999999999998864221 3458999999999997 99999999999999999999999999999
Q ss_pred HHHHhhhHHHHHHhhhChHHHHHHHHHHHHhhcChhhHHHHHHHHHHHH--hHHhHHHHHHHHHHHHHhcCccccccccc
Q 009553 373 FAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECF--DEAMVTSAIEKLEQALKDKNISFLVLCGR 450 (532)
Q Consensus 373 iA~ETl~IYAPLA~RLGI~~iK~ELEDLsFkyL~Pe~Y~~I~~~L~e~~--re~~I~~vi~~L~~~L~~~gI~~~~V~GR 450 (532)
+|+||++|||||||||||++||||||||||+||+|+.|+.|+++|.+.+ ++.+|+++++.|++.|++.||+++ |+||
T Consensus 163 iA~Etl~iyaPLA~rLGi~~ik~ELEdl~f~~l~p~~y~~i~~~l~~~r~~r~~~i~~i~~~l~~~L~~~gi~~~-v~~R 241 (393)
T 1vj7_A 163 ISRETMEIYAPLAHRLGISRIKWELEDLAFRYLNETEFYKISHMMNEKRREREALVDDIVTKIKSYTTEQGLFGD-VYGR 241 (393)
T ss_dssp HHHHHHHTHHHHHHHTTCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTCCCE-EEEC
T ss_pred HHHHHHHHHHHHHhhcChhHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceE-EEEE
Confidence 9999999999999999999999999999999999999999999999876 789999999999999999999996 9999
Q ss_pred ccchHHHHHHHHhcCCCC--ccccccceEEecCCcchhhhhhhhhhhhhhhhhhccCccccCCcceeceec
Q 009553 451 HKSLYSIHCKMLKYALPS--LPNLIRESFVTEYSSLSHACFQKFQLLTIHGIGHILWKILCLHYLSVNIQL 519 (532)
Q Consensus 451 ~KhiYSIy~KM~kK~l~f--i~Dlia~Riiv~~~~~~~~CY~a~~~~tvLGiVH~lWkPI~~~~f~dyIa~ 519 (532)
+||+||||+||++|+++| |+|++++|||+. .+.+||++ +|+||++|+|+ +++|||||++
T Consensus 242 ~K~~~Si~~Km~rk~~~~~~i~Di~giRIi~~---~~~dcy~v------l~~i~~~~~~~-~~~~kDyIa~ 302 (393)
T 1vj7_A 242 PKHIYSIYRKMRDKKKRFDQIFDLIAIRCVME---TQSDVYAM------VGYIHELWRPM-PGRFKDYIAA 302 (393)
T ss_dssp CCCHHHHHHHHHHHGGGCCTTGGGCEEEEEES---SHHHHHHH------HHHHHHHSCBC-TTCCEETTTS
T ss_pred eCChHHHHHHHHHhCCChhhhcccceEEEEEC---CHHHHHHH------HHHHHhcCCCC-CCcccccccC
Confidence 999999999999999988 999999999997 47999998 99999999999 8999999995
No 2
>3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=2.1e-36 Score=286.53 Aligned_cols=166 Identities=25% Similarity=0.359 Sum_probs=141.3
Q ss_pred hhHHHHHHHHHHHHHHhcCCccc--cCcchhHHHHHHHHHHH-HhCC-CHHHHHHHHhhcccccccCCHHHHHHHhcHHH
Q 009553 228 FREDFVIKAFYEAERAHRGQMRA--SGDPYLLHCVETAMLLA-AIGA-NSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGV 303 (532)
Q Consensus 228 ~d~~ll~kA~~fA~~aH~GQ~Rk--SGePYI~HpleVA~ILa-~Lg~-D~etIaAALLHDvVEDT~vTlEeIee~FG~eV 303 (532)
.|.+++.+|+.||.++|.||+|+ +|+|||.||++||.||+ ++|+ |.++++||||||++|||.+|.++|++.||++|
T Consensus 4 ~d~~~l~~A~~~A~~~H~gQ~rk~~~G~pyi~Hpl~VA~ila~~l~~~D~~~i~AAlLHDvvEDt~~t~e~i~~~FG~~V 83 (179)
T 3nqw_A 4 YPSAKFMECLQYAAFKHRQQRRKDPQETPYVNHVINVSTILSVEACITDEGVLMAALLHDVVEDTDASFEDVEKLFGPDV 83 (179)
T ss_dssp CCCHHHHHHHHHHHHHSTTCBCSSSSCCBTHHHHHHHHHHHHTTTCCCCHHHHHHHHTTTHHHHSSCCHHHHHHHHCHHH
T ss_pred ccHHHHHHHHHHHHHHhccCcCCCCCCCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhHHhcCCCCHHHHHHHHCHHH
Confidence 46688999999999999999998 69999999999999999 8998 99999999999999999999999999999999
Q ss_pred HHHHHHhhcccccchHHhhccccchHHHHHHHHHHHhhccCchhhHhHHhhhHhhccccCCCCHHHH-HHHHHHhhhHHH
Q 009553 304 ADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLCKR-QRFAKETLEIFV 382 (532)
Q Consensus 304 A~LVegVTKls~l~~~~r~~~~~~~~~qAE~lRKMLLAmaDiRVVLIKLADRLhNMRtL~~lp~ekq-~riA~ETl~IYA 382 (532)
+.||+||||+..+++..+ ...|.+++|+ .|+||++||||||+||||++...+++++ ..-+++..+.+.
T Consensus 84 a~lV~gvtk~~~~~~~~~------~~~q~e~~r~-----~d~rvvlIKLADRl~NmR~l~~~~~~~~~~~r~~~Y~~~~~ 152 (179)
T 3nqw_A 84 CGLVREVTDDKSLEKQER------KRLQIENAAK-----SSCRAKLIKLADKLDNLRDLQVNTPTGWTQERRDQYFVWAK 152 (179)
T ss_dssp HHHHHHTCCCTTSCHHHH------HHHHHHSSTT-----SCHHHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCHHHH------HHHHHHHHHh-----CCHHHHHHHHHHHHHHHHHHhhCCcccccHHHHHHHHHHHH
Confidence 999999999998875432 3456777764 6999999999999999999988776643 234566777788
Q ss_pred HHHhhh--ChHHHHHHHHHHHHhh
Q 009553 383 PLANRL--GISTWKVQLENLCFKH 404 (532)
Q Consensus 383 PLA~RL--GI~~iK~ELEDLsFky 404 (532)
++++.| |-..+..+|.++.-+|
T Consensus 153 ~v~~~l~~~n~~l~~~~~~~~~~~ 176 (179)
T 3nqw_A 153 KVVDNLRGTNANLELKLDEIFRQR 176 (179)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCHHHHHHHHHHHHHc
Confidence 888887 4456777777765443
No 3
>3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=274.71 Aligned_cols=145 Identities=32% Similarity=0.424 Sum_probs=124.3
Q ss_pred hHHHHHHHHHHHHHHhcCCcccc--CcchhHHHHHHHHHH-HHhCC-CHHHHHHHHhhcccccccCCHHHHHHHhcHHHH
Q 009553 229 REDFVIKAFYEAERAHRGQMRAS--GDPYLLHCVETAMLL-AAIGA-NSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVA 304 (532)
Q Consensus 229 d~~ll~kA~~fA~~aH~GQ~RkS--GePYI~HpleVA~IL-a~Lg~-D~etIaAALLHDvVEDT~vTlEeIee~FG~eVA 304 (532)
|.+++.+|+.||.++|.||+|++ |+|||.||++||.|| .++|+ |.++++||||||++|||.+|.++|++.||++|+
T Consensus 3 d~~~l~~A~~~A~~aH~gQ~rk~~~G~PYi~Hpl~VA~il~~~~~~~d~~~i~AALLHDvvEDt~~t~e~i~~~FG~~Va 82 (178)
T 3nr1_A 3 EAAQLLEAADFAARKHRQQRRKDPEGTPYINHPIGVARILTHEAGITDIVVLQAALLHDTVEDTDTTLDEVELHFGAQVR 82 (178)
T ss_dssp HHHHHHHHHHHHHHHTTTCBCSSTTCCBTTHHHHHHHHHHHHTSCCCCHHHHHHHHHTTHHHHSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccCcCCCCCCCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhHHhcCCCCHHHHHHHHCHHHH
Confidence 67889999999999999999986 999999999999999 58996 999999999999999999999999999999999
Q ss_pred HHHHHhhcccccchHHhhccccchHHHHHHHHHHHhhccCchhhHhHHhhhHhhccccCCCCHH-----HHHHHHHHhhh
Q 009553 305 DLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLC-----KRQRFAKETLE 379 (532)
Q Consensus 305 ~LVegVTKls~l~~~~r~~~~~~~~~qAE~lRKMLLAmaDiRVVLIKLADRLhNMRtL~~lp~e-----kq~riA~ETl~ 379 (532)
.||++|||+..+++..+ +..|.+++| ..|+||++|||||||||||++...+++ +..+|-+|...
T Consensus 83 ~lV~gvTk~~~~~~~~~------~~~q~e~~~-----~~d~rvvlIKLADRl~NmR~l~~~~~~~~~~~r~~~Y~~~~~~ 151 (178)
T 3nr1_A 83 RLVEEVTDDKTLPKLER------KRLQVEQAP-----HSSPGAKLVKLADKLYNLRDLNRCTPEGWSEHRVQEYFEWAAQ 151 (178)
T ss_dssp HHHHHTCCCTTSCHHHH------HHHHHHHGG-----GSCHHHHHHHHHHHHHHHHHHHHCCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccchhhH------HHHHHHHHH-----hCCchhHHHHHHHHHHHHHHhhhCCccccCHHHHHHHHHHHHH
Confidence 99999999998875432 234667754 259999999999999999998765544 45566666666
Q ss_pred HHHHH
Q 009553 380 IFVPL 384 (532)
Q Consensus 380 IYAPL 384 (532)
|..-|
T Consensus 152 v~~~l 156 (178)
T 3nr1_A 152 VVKGL 156 (178)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 65544
No 4
>3l9d_A SMU.1046C, putative GTP pyrophosphokinase; transferase; 2.48A {Streptococcus mutans}
Probab=99.86 E-value=1.2e-22 Score=202.10 Aligned_cols=118 Identities=11% Similarity=0.079 Sum_probs=82.5
Q ss_pred hHHHHHHhhhChHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhcCcccccccccccchHHHH
Q 009553 379 EIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIH 458 (532)
Q Consensus 379 ~IYAPLA~RLGI~~iK~ELEDLsFkyL~Pe~Y~~I~~~L~e~~re~~I~~vi~~L~~~L~~~gI~~~~V~GR~KhiYSIy 458 (532)
.||||||+||||.++|+|+|++.+.|. ..+.+|..+|+. +.+.+...+...+|. .|+||+|++||||
T Consensus 19 ~i~apla~~lg~~~~~~~~~~~~~~Y~--~a~~el~~kl~~---------l~~e~~~~~~~~~i~--~V~~RvKs~~SI~ 85 (255)
T 3l9d_A 19 SHMASMTGGQQMGRGSMNWEEFLDPYI--QAVGELKIKFRG---------IRKQFRKQKRHSPIE--FVTGRVKPIESIK 85 (255)
T ss_dssp ----------------CCHHHHTHHHH--HHHHHHHHHHHH---------HHHHHHHTTSCCSCC--EEEEEECCHHHHH
T ss_pred cchHhhhhHhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHH---------HHHHHHHhhccCCcc--eEEeEEcCHHHHH
Confidence 699999999999999999999988765 355555554432 333344445556776 3999999999999
Q ss_pred HHHHhcCCCC------ccccccceEEecCCcchhhhhhhhhhhhhhhhhhccCccccCCcceeceec
Q 009553 459 CKMLKYALPS------LPNLIRESFVTEYSSLSHACFQKFQLLTIHGIGHILWKILCLHYLSVNIQL 519 (532)
Q Consensus 459 ~KM~kK~l~f------i~Dlia~Riiv~~~~~~~~CY~a~~~~tvLGiVH~lWkPI~~~~f~dyIa~ 519 (532)
+||++|+++| |+|++++|||+. .+.+||++ +++||+.|.|. +.+|||||+.
T Consensus 86 ~Km~Rk~~~~~~~~~~I~Di~GiRII~~---~~~D~y~v------~~~I~~~~~~~-~~~~KDYIa~ 142 (255)
T 3l9d_A 86 EKMVLRGIKKENLTQDMQDIAGLRIMVQ---FVDDVNDV------LELLRQRKDMK-VIQERDYINN 142 (255)
T ss_dssp HHHHHHTCCGGGHHHHCSCSEEEEEEES---STTHHHHH------HHHHHTCSSSE-EEEEEEESCC
T ss_pred HHHHhcCCCccchhhhccccceEEEEEe---CHHHHHHH------HHHHHhcCCCc-eeeeeccccC
Confidence 9999999875 899999999997 47999997 99999999999 7899999986
No 5
>2be3_A GTP pyrophosphokinase; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG, transferase; HET: PG4; 2.40A {Streptococcus pneumoniae} SCOP: d.218.1.8
Probab=99.46 E-value=5.1e-14 Score=137.78 Aligned_cols=64 Identities=17% Similarity=0.123 Sum_probs=58.9
Q ss_pred cccccccchHHHHHHHHhcCCCC------ccccccceEEecCCcchhhhhhhhhhhhhhhhhhccCccccCCcceeceec
Q 009553 446 VLCGRHKSLYSIHCKMLKYALPS------LPNLIRESFVTEYSSLSHACFQKFQLLTIHGIGHILWKILCLHYLSVNIQL 519 (532)
Q Consensus 446 ~V~GR~KhiYSIy~KM~kK~l~f------i~Dlia~Riiv~~~~~~~~CY~a~~~~tvLGiVH~lWkPI~~~~f~dyIa~ 519 (532)
.|.||+||+||||+||++|+++| |+|++++|||+. .+.+||++ +|+||+.|.|. +.+|||||+.
T Consensus 44 ~v~~RvK~~~Si~~K~~rk~~~~~~~~~~i~Di~GiRIi~~---~~~d~y~v------~~~i~~~~~~~-~~~~kDyI~~ 113 (226)
T 2be3_A 44 FVTGRVKPIESIKEKMARRGITYATLEHDLQDIAGLRVMVQ---FVDDVKEV------VDILHKRQDMR-IIQERDYITH 113 (226)
T ss_dssp EEEEEECCHHHHHHHHHHHTCCTTTHHHHCTTSEEEEEEES---CGGGHHHH------HHHHHTCSSEE-EEEEEETTTT
T ss_pred eEEeeCCCHHHHHHHHHhhCCCcccchhhccccceEEEEEc---CHHHHHHH------HHHHHhccCCc-eeeecchhhc
Confidence 39999999999999999999875 899999999997 47899998 99999999998 6799999996
No 6
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1
Probab=94.89 E-value=0.47 Score=44.86 Aligned_cols=50 Identities=14% Similarity=0.012 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHH----hCCCHH-HHHHHHhhcc
Q 009553 232 FVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAA----IGANST-VVAAGLLHDT 284 (532)
Q Consensus 232 ll~kA~~fA~~aH~GQ~RkSGePYI~HpleVA~ILa~----Lg~D~e-tIaAALLHDv 284 (532)
++.++.++..+...+. .....+.|.+.|+.+... ++.|.+ ...||||||+
T Consensus 14 l~~~~~~~v~~~~~~~---~~~h~~~H~~rV~~~a~~la~~~~~d~~~l~~AaLLHDI 68 (220)
T 2pq7_A 14 LREILNIVREAFKDYD---DPAHDISHTFRVMENASEIASREKCDLQKAIIAALLHDI 68 (220)
T ss_dssp HHHHHHHHHHHHTTCC---CTTTSHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcC---CCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcC
Confidence 3456666776655422 233457899999876643 467765 5689999999
No 7
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1
Probab=94.41 E-value=0.2 Score=47.36 Aligned_cols=55 Identities=16% Similarity=0.102 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHH----hCCCHH-HHHHHHhhcccccc
Q 009553 231 DFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAA----IGANST-VVAAGLLHDTLDDA 288 (532)
Q Consensus 231 ~ll~kA~~fA~~aH~GQ~RkSGePYI~HpleVA~ILa~----Lg~D~e-tIaAALLHDvVEDT 288 (532)
+++.++.++..+...+. ....-+.|.+.|+.+... .+.|.+ +.+||||||+....
T Consensus 5 ~li~~~~~~v~~~~~~~---~~~H~~~H~~rV~~~a~~ia~~~~~d~~~v~~AAlLHDig~~~ 64 (209)
T 3b57_A 5 EIILSAKNWMHSHFENE---TTGHDWSHIKRVWKLSKEIQSKEGGDLFTIELAALFHDYSDIK 64 (209)
T ss_dssp HHHHHHHHHHHTTC---------CCHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHTTCCC--
T ss_pred HHHHHHHHHHHHHHhcC---CCCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhccCccc
Confidence 45666666666554422 122337899999876654 467866 55899999997643
No 8
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1
Probab=94.23 E-value=0.27 Score=47.59 Aligned_cols=54 Identities=17% Similarity=0.144 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHH----hCCCHH-HHHHHHhhcccc
Q 009553 230 EDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAA----IGANST-VVAAGLLHDTLD 286 (532)
Q Consensus 230 ~~ll~kA~~fA~~aH~GQ~RkSGePYI~HpleVA~ILa~----Lg~D~e-tIaAALLHDvVE 286 (532)
.++|+++.+|+.+.+.+. .+..-+.|...|+.+... .+.|.+ ..+||||||+..
T Consensus 4 ~~~i~~~~~~v~~~l~~~---~~~H~~~H~~rV~~~a~~ia~~~~~d~~~l~~AalLHDig~ 62 (223)
T 3dto_A 4 QAILQSAEAWVKKQLMDE---YSGHDWYHIRRVTLMAKAIGEQEKVDVFVVQIAALFHDLID 62 (223)
T ss_dssp HHHHHHHHHHHHHTTTTC-------CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHhhcC---CCCCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhccc
Confidence 367888899998887654 233558899999775543 467765 557899999985
No 9
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1
Probab=93.70 E-value=0.48 Score=45.33 Aligned_cols=54 Identities=20% Similarity=0.185 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHHh-----CCCHH-HHHHHHhhccccc
Q 009553 231 DFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAI-----GANST-VVAAGLLHDTLDD 287 (532)
Q Consensus 231 ~ll~kA~~fA~~aH~GQ~RkSGePYI~HpleVA~ILa~L-----g~D~e-tIaAALLHDvVED 287 (532)
++++++.++..+...++ ....-+.|.+.|+.....+ +.|.+ +.+||||||+...
T Consensus 5 ~li~~~~~~v~~~~~~~---~~~H~~~H~~rV~~~a~~i~a~~~~~d~~~l~lAAlLHDigk~ 64 (225)
T 2qgs_A 5 MKIKKAYEYMKSFHQHD---TTGHDIAHVERVYNNACYIAKRENITDTLVIELSSLLHDTVDS 64 (225)
T ss_dssp HHHHHHHHHHHHHTTTC---SSCHHHHHHHHHHHHHHHHHHHTTCSCCHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHHHhcC---CCccCHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHcCCCC
Confidence 45667777777665532 2233578999998875443 55654 5689999999874
No 10
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1
Probab=93.48 E-value=0.33 Score=46.71 Aligned_cols=56 Identities=23% Similarity=0.140 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHH----hCCCHHH-HHHHHhhcccc
Q 009553 228 FREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAA----IGANSTV-VAAGLLHDTLD 286 (532)
Q Consensus 228 ~d~~ll~kA~~fA~~aH~GQ~RkSGePYI~HpleVA~ILa~----Lg~D~et-IaAALLHDvVE 286 (532)
.+.++++++.+++.+...++ ....-+.|.+.|+..... .+.|.+. .+||||||+..
T Consensus 7 ~~~~~i~~~~~~v~~~~~~~---~~~H~~~H~~rV~~~a~~ia~~~~~d~~ll~lAAlLHDigk 67 (231)
T 2pjq_A 7 ITETQLTAIQTYALQKLAHD---HSGHGRDHLQRVNRLARRLAKDEGANLNLTLAAAWLHDVID 67 (231)
T ss_dssp CCHHHHHHHHHHHHTSSTTC---CSSCSHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHHHhcc---CCCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcCCc
Confidence 45566777777777665532 122347899999876654 4678765 58999999975
No 11
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1
Probab=93.36 E-value=0.37 Score=46.55 Aligned_cols=54 Identities=19% Similarity=0.229 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHHh----CCCHH-HHHHHHhhcccc
Q 009553 230 EDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAI----GANST-VVAAGLLHDTLD 286 (532)
Q Consensus 230 ~~ll~kA~~fA~~aH~GQ~RkSGePYI~HpleVA~ILa~L----g~D~e-tIaAALLHDvVE 286 (532)
.++|+++.+|+.+.+.+. .+..-+.|...|+.+...+ +.|.+ ..+||||||+..
T Consensus 4 ~~~i~~~~~~v~~~l~~~---~~~H~~~H~~rV~~~a~~ia~~~~~d~~~l~~AAlLHDig~ 62 (223)
T 3djb_A 4 QEKIEKTITFVKHILEKD---ASGHDWYHIRRVHKMAISLSEQEGGNRFIIEMAALLHDVAD 62 (223)
T ss_dssp HHHHHHHHHHHHHHTTSS---SCTTTHHHHHHHHHHHHHHHTTTCSCHHHHHHHHTTHHHHC
T ss_pred HHHHHHHHHHHHHHhhcC---CCcCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhccc
Confidence 367888999998887654 2335588999998866654 56765 557999999985
No 12
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphoh structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.10A {Escherichia coli} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A*
Probab=91.90 E-value=0.52 Score=44.85 Aligned_cols=95 Identities=19% Similarity=0.215 Sum_probs=53.0
Q ss_pred CcchhHHHHHHHHHHHHh----------CCCH-HHHHHHHhhcccc----cc--cCC--HHHHHHHhcHHHHHHHHHhhc
Q 009553 252 GDPYLLHCVETAMLLAAI----------GANS-TVVAAGLLHDTLD----DA--FLS--YDYIFRTFGAGVADLVEGVSK 312 (532)
Q Consensus 252 GePYI~HpleVA~ILa~L----------g~D~-etIaAALLHDvVE----DT--~vT--lEeIee~FG~eVA~LVegVTK 312 (532)
++.-..|.++||.+...+ ++|. .++.+|||||+.| |. ++. -.++.+.+++.=..+++.+..
T Consensus 29 ~EnVaeHS~~VA~lA~~la~~~~~~~~~~vD~~~~~~~aLlHDi~E~~~GDi~~p~k~~~~~~~~~~~~~E~~~~~~i~~ 108 (201)
T 2paq_A 29 TENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDASEVLTGDLPTPVKYFNSQIAQEYKAIEKIAQQKLVD 108 (201)
T ss_dssp CCBHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHTTTTHHHHCCCCCC---------CTHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHHHHhhhHHhcCcccCHHHHHHHHHhcccccccCCCCCchHhhhchHHHHHhcccHHHHHHHHHH
Confidence 477889999998754332 4565 4667899999987 32 221 124444444433333333322
Q ss_pred ccccchHHhhccccchHHHHHHHHHHHhhcc--CchhhHhHHhhhHhhc
Q 009553 313 LSQLSKLARENNTASKTVEADRLHTMFLAMA--DARAVLIKLADRLHNM 359 (532)
Q Consensus 313 ls~l~~~~r~~~~~~~~~qAE~lRKMLLAma--DiRVVLIKLADRLhNM 359 (532)
. ++. .+.+.++.+..... .+-+.+||.||+|.-+
T Consensus 109 ~--Lp~-----------~~~~e~~~l~~e~e~~t~ea~lvk~aD~l~a~ 144 (201)
T 2paq_A 109 M--VPE-----------ELRDIFAPLIDEHAYSDEEKSLVKQADALCAY 144 (201)
T ss_dssp T--SCG-----------GGHHHHHHHHTTTSCCHHHHHHHHHHHHHHHH
T ss_pred h--CCH-----------HHHHHHHHHHhcccCCCHHHHHHHHHHHHHHH
Confidence 1 111 12345555554432 4678999999999776
No 13
>2ibn_A Inositol oxygenase; reductase, DIIRON, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: MSE I1N; 1.50A {Homo sapiens} SCOP: a.211.1.4
Probab=78.24 E-value=2.3 Score=42.27 Aligned_cols=53 Identities=21% Similarity=0.138 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHHhCCC-HHHHHHHHhhcc
Q 009553 232 FVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGAN-STVVAAGLLHDT 284 (532)
Q Consensus 232 ll~kA~~fA~~aH~GQ~RkSGePYI~HpleVA~ILa~Lg~D-~etIaAALLHDv 284 (532)
.|.+|+++-.......-.....|-+.|+++.|+...+-|.| +-.+.||||||+
T Consensus 37 ti~ea~~~Ln~lvDeSDPD~~v~ql~HaLQTAe~ar~dg~d~dw~~laaLlHDL 90 (250)
T 2ibn_A 37 TVMEAVDLLDGLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDL 90 (250)
T ss_dssp CHHHHHHHGGGCCCTTC---CCCHHHHHHHHHHHHHHHSTTCHHHHHHHHHTTG
T ss_pred cHHHHHHHHHHhcCCcCCCCcccHHHHHHHHHHHHHHhCcChhHHHHHHHHhcc
Confidence 46666666554444432234567799999999999988999 555599999986
No 14
>3kh1_A Predicted metal-dependent phosphohydrolase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.37A {Magnetospirillum magnetotacticum ms-1}
Probab=72.04 E-value=8.9 Score=36.59 Aligned_cols=115 Identities=13% Similarity=0.050 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHhc--CCcccc-------CcchhHHHHHHHHHHHHh------CCCH-HHHHHHHhhcccccc--cCCH-
Q 009553 232 FVIKAFYEAERAHR--GQMRAS-------GDPYLLHCVETAMLLAAI------GANS-TVVAAGLLHDTLDDA--FLSY- 292 (532)
Q Consensus 232 ll~kA~~fA~~aH~--GQ~RkS-------GePYI~HpleVA~ILa~L------g~D~-etIaAALLHDvVEDT--~vTl- 292 (532)
.+.+-+.|...+++ .+.|.+ .|.--.|...||.+..-+ ++|. .++..||+||+.|-- +++.
T Consensus 9 ~l~~~~~Fl~~~~~LK~i~R~~~~~~~~r~EsVAeHS~~vAliA~~la~~~~~~vd~~r~~~maL~HDl~E~~tGDi~~~ 88 (200)
T 3kh1_A 9 RLAAQMSFVVEIDKLKTILRQTLLTDSSRRENDAEHSWHIATMAFLLAEYADEAVQIGRVARMLLIHDIVEIDAGDTFIH 88 (200)
T ss_dssp HHHHHHHHHHHGGGGGGCEEEEECTTSSSEEEHHHHHHHHHHHHHHTGGGSCTTCCHHHHHHHHHHTTTTHHHHCCCCTT
T ss_pred HHHHHHHHHHHHHhhCcCCcCCCcCCCCCCccHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHhcChHHHHhCCcccc
Confidence 45555566555543 223321 255678999998764432 2675 678899999999831 2221
Q ss_pred H-HHHHHhcHHHHHHHHHhhcccccchHHhhccccchHHHHHHHHHHHhhc---cCchhhHhHHhhhHhhc
Q 009553 293 D-YIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAM---ADARAVLIKLADRLHNM 359 (532)
Q Consensus 293 E-eIee~FG~eVA~LVegVTKls~l~~~~r~~~~~~~~~qAE~lRKMLLAm---aDiRVVLIKLADRLhNM 359 (532)
+ ...+.+-..=...++.+.. .++ ..+.+.++.++.-. ..+-+.+||-||+|.-+
T Consensus 89 ~~~~~~~~~~~E~~A~~~l~~--~LP-----------~~~~~e~~~Lw~EyE~~~t~Ea~~vK~~Dkl~~~ 146 (200)
T 3kh1_A 89 DEAGNEDKEERERKAAARLFG--LLP-----------PDQAAEYSALWQEYEARETADARFADALDRLQPL 146 (200)
T ss_dssp CCC---CHHHHHHHHHHHHHT--TSC-----------HHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHH--hCC-----------hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 0 0111111000111222211 122 12344556555444 26789999999999844
No 15
>1xx7_A Oxetanocin-like protein; PSI, secsg, protein structure initiative, southeast collaboratory for structural genomics; 2.26A {Pyrococcus furiosus} SCOP: a.211.1.1
Probab=68.89 E-value=12 Score=35.22 Aligned_cols=34 Identities=18% Similarity=0.320 Sum_probs=25.9
Q ss_pred cchhHHHHHHHHH---HHH------hCCCHH-HHHHHHhhcccc
Q 009553 253 DPYLLHCVETAML---LAA------IGANST-VVAAGLLHDTLD 286 (532)
Q Consensus 253 ePYI~HpleVA~I---La~------Lg~D~e-tIaAALLHDvVE 286 (532)
+.--.|.+.||.+ |+. -++|.+ ++..||+||+.|
T Consensus 36 EsvAeHS~~vA~ia~~la~~~~~~~~~~d~~r~~~~aL~HDl~E 79 (184)
T 1xx7_A 36 ESVADHSYRVAFITLLLAEELKKKGVEIDVEKALKIAIIHDLGE 79 (184)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTTH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHcCcHH
Confidence 5567899988874 444 367875 788999999987
No 16
>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural genomics, JOIN for structural genomics, JCSG; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans}
Probab=68.03 E-value=4.3 Score=37.32 Aligned_cols=33 Identities=18% Similarity=0.209 Sum_probs=24.5
Q ss_pred chhHHHHHHHHHHHH----hCCCHH-HHHHHHhhcccc
Q 009553 254 PYLLHCVETAMLLAA----IGANST-VVAAGLLHDTLD 286 (532)
Q Consensus 254 PYI~HpleVA~ILa~----Lg~D~e-tIaAALLHDvVE 286 (532)
..+.|.+.||.+... +|+|++ ..+||||||+=.
T Consensus 18 ~~~~Hs~~Va~~A~~lA~~~g~~~~~~~~agLLHDIGk 55 (188)
T 2o08_A 18 HRYQHTIGVMETAIDLAKLYGADQQKAELAAIFHDYAK 55 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 356899999875543 688754 568999999754
No 17
>2ogi_A Hypothetical protein SAG1661; structural genomics, joint center for structural genomics, J protein structure initiative; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V}
Probab=67.16 E-value=4.6 Score=37.55 Aligned_cols=32 Identities=22% Similarity=0.202 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHH----HhCCCHH-HHHHHHhhcccc
Q 009553 255 YLLHCVETAMLLA----AIGANST-VVAAGLLHDTLD 286 (532)
Q Consensus 255 YI~HpleVA~ILa----~Lg~D~e-tIaAALLHDvVE 286 (532)
.+.|.+.||.+.. .+|+|++ ..+||||||+=.
T Consensus 27 ~~~Hs~~Va~~A~~lA~~~g~d~~~~~~AgLLHDIGK 63 (196)
T 2ogi_A 27 RFNHVLGVERAAIELAERYGYDKEKAGLAALLHDYAK 63 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHcCC
Confidence 5689999987554 3688764 568999999754
No 18
>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824}
Probab=62.72 E-value=6.3 Score=36.28 Aligned_cols=32 Identities=19% Similarity=0.225 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHHHH----hCCCHH-HHHHHHhhcccc
Q 009553 255 YLLHCVETAMLLAA----IGANST-VVAAGLLHDTLD 286 (532)
Q Consensus 255 YI~HpleVA~ILa~----Lg~D~e-tIaAALLHDvVE 286 (532)
.+.|.+.||.+... +|+|++ ..+||||||+=.
T Consensus 20 ~~~Hs~~Va~~A~~lA~~~g~d~~~~~~AgLLHDiGk 56 (190)
T 3ccg_A 20 RYKHSLGVMDTAVRLAGIYNEDTEKARIAGLVHDCAK 56 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC
Confidence 46799999875543 688754 568999999754
No 19
>3mzo_A LIN2634 protein; HD-domain phosphohydrolase, structural genomics, joint cente structural genomics, JCSG, protein structure initiative; HET: MSE; 1.98A {Listeria innocua}
Probab=62.21 E-value=41 Score=32.22 Aligned_cols=96 Identities=7% Similarity=0.074 Sum_probs=50.6
Q ss_pred cchhHHHHHHHHHHHHh-------C--CCH-HHHHHHHhhccccc----c--cCC--HHHHHHHhcHHHHHHHHHhhccc
Q 009553 253 DPYLLHCVETAMLLAAI-------G--ANS-TVVAAGLLHDTLDD----A--FLS--YDYIFRTFGAGVADLVEGVSKLS 314 (532)
Q Consensus 253 ePYI~HpleVA~ILa~L-------g--~D~-etIaAALLHDvVED----T--~vT--lEeIee~FG~eVA~LVegVTKls 314 (532)
+.--.|...||.+..-+ + +|. .++..||+||+.|- . ++. ..++.+.+.+-=..+++.+. ..
T Consensus 29 EsvAeHS~~vA~iA~~La~~~~~~~~~vD~~r~~~maL~HDl~E~~~GDi~tPvk~~~~~~~~~~~~~E~~a~~~li-~~ 107 (216)
T 3mzo_A 29 HSVAEHSYKVTSIAQFFGAVEEDAGNEVNWRALYEKALNHDYSELFIGDIKTPVKYATTELREMLSEVEESMTKNFI-SR 107 (216)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTGGGGTSCCCCSCSSSCCHHHHHHHHHHHHHHHHHHH-HH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHccHHHHHcCCCCchhcccchhhHHHHHHHHHHHHHHHH-Hc
Confidence 56678999887654332 2 565 46789999999983 2 221 12333333221111222110 01
Q ss_pred ccchHHhhccccchHHHHHHHHHHHhhc--cCchhhHhHHhhhHhhcc
Q 009553 315 QLSKLARENNTASKTVEADRLHTMFLAM--ADARAVLIKLADRLHNMM 360 (532)
Q Consensus 315 ~l~~~~r~~~~~~~~~qAE~lRKMLLAm--aDiRVVLIKLADRLhNMR 360 (532)
.++. .+.+.++.++..- ..+-+.+||-||+|.-+-
T Consensus 108 ~LP~-----------~~~~~~~~~~~e~~~~t~ea~~vK~aDkl~~~l 144 (216)
T 3mzo_A 108 EIPA-----------TFQPIYRHLLKEGKDSTLEGKILAISDKVDLLY 144 (216)
T ss_dssp HSCG-----------GGHHHHHHHHSCCCSSSHHHHHHHHHHHHHHHH
T ss_pred cCCH-----------HHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHH
Confidence 1110 1234455544432 256789999999997664
No 20
>3m1t_A Putative phosphohydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE GOL; 1.62A {Shewanella amazonensis} SCOP: a.211.1.0
Probab=62.03 E-value=64 Score=31.17 Aligned_cols=33 Identities=18% Similarity=0.334 Sum_probs=24.7
Q ss_pred cchhHHHHHHHHHHHH----hCCCH-HHHHHHHhhccc
Q 009553 253 DPYLLHCVETAMLLAA----IGANS-TVVAAGLLHDTL 285 (532)
Q Consensus 253 ePYI~HpleVA~ILa~----Lg~D~-etIaAALLHDvV 285 (532)
..++.|.+.||.+... ++.+. +...||||||+=
T Consensus 104 ~~~~~hs~~~a~~a~~la~~~~~~~~~~~~agLLhdiG 141 (275)
T 3m1t_A 104 ADFWGNTFEVAIICQELAKRLGTLPEEAFTCGILHSIG 141 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHcc
Confidence 4588999999876553 56765 467899999863
No 21
>2cqz_A 177AA long hypothetical protein; hypothetical proteins, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii}
Probab=59.14 E-value=8.5 Score=35.54 Aligned_cols=35 Identities=14% Similarity=0.229 Sum_probs=26.2
Q ss_pred cchhHHHHHHHHHH---HH------hCCCHH-HHHHHHhhccccc
Q 009553 253 DPYLLHCVETAMLL---AA------IGANST-VVAAGLLHDTLDD 287 (532)
Q Consensus 253 ePYI~HpleVA~IL---a~------Lg~D~e-tIaAALLHDvVED 287 (532)
+.-..|...||.+. +. -+.|.. ++.+|||||+.|.
T Consensus 31 esvaeHs~rVa~~A~~la~~~~~~~~~~d~~~v~~~aLlHD~~E~ 75 (177)
T 2cqz_A 31 ESIADHSFGVAFITLVLADVLEKRGKRIDVEKALKMAIVHDLAEA 75 (177)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTTHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhchHHH
Confidence 55678999988755 33 356766 5789999999863
No 22
>4dmb_A HD domain-containing protein 2; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium (NESG); HET: MSE GOL; 1.90A {Homo sapiens}
Probab=59.12 E-value=32 Score=32.85 Aligned_cols=92 Identities=16% Similarity=0.179 Sum_probs=53.4
Q ss_pred CcchhHHHHHHHHHHHHh---CCCH-HHHHHHHhhcccccc--cCCH------HHHHHHhcHHHHHHHHHhhcccccchH
Q 009553 252 GDPYLLHCVETAMLLAAI---GANS-TVVAAGLLHDTLDDA--FLSY------DYIFRTFGAGVADLVEGVSKLSQLSKL 319 (532)
Q Consensus 252 GePYI~HpleVA~ILa~L---g~D~-etIaAALLHDvVEDT--~vTl------EeIee~FG~eVA~LVegVTKls~l~~~ 319 (532)
.+.--.|...||.+..-+ ++|. .++..||+||+.|-- ++|. ++..+ .|- ..++.+. ..++
T Consensus 43 ~ESVAEHS~~vAliA~~l~~~~vD~~r~~~maL~HDl~E~~tGDitp~k~~~~~~k~~---~E~-~A~~~l~--~~LP-- 114 (204)
T 4dmb_A 43 PESVSDHMYRMAVMAMVIKDDRLNKDRCVRLALVHDMAECIVGDIAPADNIPKEEKHR---REE-EAMKQIT--QLLP-- 114 (204)
T ss_dssp CCBHHHHHHHHHHHHHHSCCTTSCHHHHHHHHHHTTTTHHHHCCCCGGGCCCHHHHHH---HHH-HHHHHHH--TTSC--
T ss_pred CCcHHHHHHHHHHHHHHHccccCCHHHHHHHHHhcchHHhhcCCCccccccchhhhHH---HHH-HHHHHHH--HhCC--
Confidence 366778999998766554 3675 677899999999842 3332 11100 000 1111111 1122
Q ss_pred HhhccccchHHHHHHHHHHHhhc---cCchhhHhHHhhhHhhcc
Q 009553 320 ARENNTASKTVEADRLHTMFLAM---ADARAVLIKLADRLHNMM 360 (532)
Q Consensus 320 ~r~~~~~~~~~qAE~lRKMLLAm---aDiRVVLIKLADRLhNMR 360 (532)
..+.+.++.++.-+ ..+-+.+||-||+|.-+-
T Consensus 115 ---------~~~~~e~~~Lw~Eye~~~t~Ea~~vK~aDkle~ll 149 (204)
T 4dmb_A 115 ---------EDLRKELYELWEEYETQSSAEAKFVKQLDQCEMIL 149 (204)
T ss_dssp ---------HHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 12345566665554 267899999999997664
No 23
>2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, P; dntpase, DNTP, single-stranded DNA, DNA dGTPase, HD superfamily, structural genomics; 2.20A {Thermus thermophilus}
Probab=58.80 E-value=14 Score=38.62 Aligned_cols=54 Identities=24% Similarity=0.214 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhcCCcc--ccC---cchhHHHHHHHHHHH----HhCCCHHH-HHHHHhhccc
Q 009553 232 FVIKAFYEAERAHRGQMR--ASG---DPYLLHCVETAMLLA----AIGANSTV-VAAGLLHDTL 285 (532)
Q Consensus 232 ll~kA~~fA~~aH~GQ~R--kSG---ePYI~HpleVA~ILa----~Lg~D~et-IaAALLHDvV 285 (532)
.|...-.|=.-.+..|.- ..| ..-++|.++||.+.. .+|++++. -+||||||+=
T Consensus 48 rII~S~~FrRL~~ktQv~~~~~~d~~~tRl~HSl~Va~iar~ia~~l~l~~~l~~~a~LlHDiG 111 (376)
T 2dqb_A 48 RILHTTAFRRLEYKTQVLPGWAGDYYRTRLTHTLEVAQVSRSIARALGLNEDLTEAIALSHDLG 111 (376)
T ss_dssp HHHHSHHHHHGGGSCSSSCSCC--CCCCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTTT
T ss_pred HHHCCHHHHHHcCCCccccCCCCcccccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 333333443344555642 123 245789999998655 47888764 4789999975
No 24
>2gz4_A Hypothetical protein ATU1052; structural genomics, PSI, protein structure initiative; 1.50A {Agrobacterium tumefaciens} SCOP: a.211.1.1
Probab=50.56 E-value=14 Score=35.66 Aligned_cols=35 Identities=23% Similarity=0.392 Sum_probs=28.0
Q ss_pred cchhHHHHHHHHHHHHh--CCCHHHHHHHHhhccccc
Q 009553 253 DPYLLHCVETAMLLAAI--GANSTVVAAGLLHDTLDD 287 (532)
Q Consensus 253 ePYI~HpleVA~ILa~L--g~D~etIaAALLHDvVED 287 (532)
+.--.|.+.||.+...+ +.|...+.+||+||+.|-
T Consensus 54 eSVAeHS~~va~ia~~l~~~~~~r~~~~aL~HD~~E~ 90 (207)
T 2gz4_A 54 FTVAQHCLIVETIFCRMCPGATPDEMQMALLHDAPEY 90 (207)
T ss_dssp CBHHHHHHHHHHHHHHHCTTCCHHHHHHHHTTTTTHH
T ss_pred ccHHHHHHHHHHHHHHHCCCCCHHHHHHHHhcCchHh
Confidence 55668999999876643 467889999999999884
No 25
>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site AN site being FAR from EACH other, structural genomics, PSI; HET: GDP; 2.00A {Aquifex aeolicus} SCOP: a.211.1.1
Probab=48.84 E-value=11 Score=39.10 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=26.6
Q ss_pred cchhHHHHHHHHHHH----HhCCCH--HHHHHHHhhccccc
Q 009553 253 DPYLLHCVETAMLLA----AIGANS--TVVAAGLLHDTLDD 287 (532)
Q Consensus 253 ePYI~HpleVA~ILa----~Lg~D~--etIaAALLHDvVED 287 (532)
...+.|.+.||.+.. .+++|. ...+||||||+-.-
T Consensus 49 ~~r~~Hsl~V~~~a~~ia~~~~~~~~~~~~~AaLLHDiG~~ 89 (371)
T 2hek_A 49 HTRFEHSLGVYHITERICESLKVKEKELVKLAGLLHDLGHP 89 (371)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHTTTTTCC
T ss_pred CChhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcc
Confidence 456899999987654 367775 57789999997653
No 26
>2huo_A Inositol oxygenase; protein-substrate complex, HD domain fold, oxidoreductase; HET: INS; 2.00A {Mus musculus} SCOP: a.211.1.4 PDB: 3bxd_A*
Probab=40.51 E-value=33 Score=34.66 Aligned_cols=54 Identities=19% Similarity=0.117 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHHhCCC-HHHHHHHHhhcc
Q 009553 231 DFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGAN-STVVAAGLLHDT 284 (532)
Q Consensus 231 ~ll~kA~~fA~~aH~GQ~RkSGePYI~HpleVA~ILa~Lg~D-~etIaAALLHDv 284 (532)
..|.+|+++-.......-.....|-|.|++++|+....-|-+ .=...+||+||.
T Consensus 75 MtIweA~e~Ln~LvDeSDPD~dl~qi~H~lQTAEaiR~d~pp~dW~qLtGLiHDL 129 (289)
T 2huo_A 75 MTIMEAVGMLDDLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDL 129 (289)
T ss_dssp ECHHHHHHHGGGCCCSSCTTCCSCHHHHHHHHHHHHHHHCTTCHHHHHHHHHTTG
T ss_pred CcHHHHHHHHHHhcCCcCCccchhHHHHHHHHHHHHHHhCCCcchheeeeecccc
Confidence 346677766655555443345688999999999999988887 446678999986
No 27
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=35.34 E-value=30 Score=31.36 Aligned_cols=69 Identities=16% Similarity=0.099 Sum_probs=39.4
Q ss_pred HHHHHhhcCh--hhHHHHHHHHHHHH-hHHhHHHHHHHHHH-------HHHhcCcccccccccccchHHHHHHHHhcCCC
Q 009553 398 ENLCFKHLNP--DQHTELSSKLVECF-DEAMVTSAIEKLEQ-------ALKDKNISFLVLCGRHKSLYSIHCKMLKYALP 467 (532)
Q Consensus 398 EDLsFkyL~P--e~Y~~I~~~L~e~~-re~~I~~vi~~L~~-------~L~~~gI~~~~V~GR~KhiYSIy~KM~kK~l~ 467 (532)
.+.+++||-- -.-.+|.++|.++. .++.|+.+++.|.+ ...+.-+... +. +-|...-|-++|+.||++
T Consensus 20 ~~~Al~~Ls~r~~s~~EL~~KL~~kg~~~e~Ie~vl~~l~~~g~ldD~rfA~~~v~~~-~~-~~~G~~~I~~eL~~KGI~ 97 (162)
T 3dfg_A 20 VQRALGLLVHREHSKKELNRKLQARGIEPEAAQAAVERLAGEGWQDDVRFAASVVRNR-AS-SGYGPLHIRAELGTHGLD 97 (162)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCCHHHHHHHHHHHH-HT-TTCCHHHHHHHHHHTTCC
T ss_pred HHHHHHHhhchhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HH-ccccHHHHHHHHHHcCCC
Confidence 3445555543 33367788887654 45555666555432 1122112211 22 357778899999999998
Q ss_pred C
Q 009553 468 S 468 (532)
Q Consensus 468 f 468 (532)
.
T Consensus 98 ~ 98 (162)
T 3dfg_A 98 S 98 (162)
T ss_dssp H
T ss_pred H
Confidence 6
No 28
>3bg2_A DGTP triphosphohydrolase; structural genomics, NYSGXRC, target 10395N, triphosphohydro PSI-2, protein structure initiative; 1.95A {Leeuwenhoekiella blandensis}
Probab=35.08 E-value=29 Score=36.92 Aligned_cols=55 Identities=24% Similarity=0.243 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHhcCCccccC-----cchhHHHHHHHHHHHH----hCC---------------C-----HHHHHHHH
Q 009553 230 EDFVIKAFYEAERAHRGQMRASG-----DPYLLHCVETAMLLAA----IGA---------------N-----STVVAAGL 280 (532)
Q Consensus 230 ~~ll~kA~~fA~~aH~GQ~RkSG-----ePYI~HpleVA~ILa~----Lg~---------------D-----~etIaAAL 280 (532)
.++|...-.|=.-.+..|.-..+ ..-++|.++|+.+... ++. . .-+.+|||
T Consensus 35 ~~rii~s~~frRL~~ktQv~~~~~~~~~htRltHSL~V~~iar~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~lv~~a~L 114 (444)
T 3bg2_A 35 YDRIIFSAPFRSLQDKTQVIPLSKTDFVHTRLTHSLEVSVVGRSLGRMVGKKLLEKYPHLEQVYGYKFNDFGAIVAAAAL 114 (444)
T ss_dssp HHHHHHSHHHHHGGGCBCSCC---CCCCCBHHHHHHHHHHHHHHHHHHHHHHHHHHSTHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHhhhccCCccCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHH
Confidence 34444444454455666653322 2358999999886653 221 1 23558999
Q ss_pred hhcc
Q 009553 281 LHDT 284 (532)
Q Consensus 281 LHDv 284 (532)
+||+
T Consensus 115 ~HDi 118 (444)
T 3bg2_A 115 AHDI 118 (444)
T ss_dssp HTTT
T ss_pred hccc
Confidence 9996
No 29
>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE ADP; 2.20A {Bacteroides thetaiotaomicron vpi-5482}
Probab=34.71 E-value=16 Score=38.43 Aligned_cols=32 Identities=28% Similarity=0.276 Sum_probs=23.5
Q ss_pred chhHHHHHHHHHHHH----hC-----CC----HHHHHHHHhhccc
Q 009553 254 PYLLHCVETAMLLAA----IG-----AN----STVVAAGLLHDTL 285 (532)
Q Consensus 254 PYI~HpleVA~ILa~----Lg-----~D----~etIaAALLHDvV 285 (532)
.-+.|.++|+.+... ++ ++ ..+.+||||||+=
T Consensus 55 tRf~HSLgV~~la~~l~~~l~~~~~~~~~~d~~~~~~AaLlHDiG 99 (410)
T 2q14_A 55 TRFQHSLGAFYLMSEAITQLTSKGNFIFDSEAEAVQAAILLHDIG 99 (410)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTTT
T ss_pred CeeehHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC
Confidence 568999999987664 34 33 3467899999974
No 30
>3ssb_I IMPI alpha, inducible metalloproteinase inhibitor protein; thermolysin fold - family I8 fold, metalloprotease thermoLys inhibitor; 1.80A {Galleria mellonella}
Probab=34.14 E-value=6.2 Score=27.32 Aligned_cols=15 Identities=27% Similarity=0.853 Sum_probs=12.5
Q ss_pred hhHhhhhhccccccC
Q 009553 158 NGFVRNALGSCVDYD 172 (532)
Q Consensus 158 ~~~~~~~~~~~~~~~ 172 (532)
.|||||.-|.||--+
T Consensus 11 ~G~vrn~~G~CV~~~ 25 (32)
T 3ssb_I 11 DGYARDVNGKCIPIK 25 (32)
T ss_dssp TTEEECTTSCEEEGG
T ss_pred CCcEECCCCCEECHH
Confidence 699999999998543
No 31
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}
Probab=34.09 E-value=1.7e+02 Score=27.87 Aligned_cols=81 Identities=15% Similarity=0.248 Sum_probs=49.7
Q ss_pred hHHhhhHhhccccCCCCHHHHHHHHHHhhhHHHHHHhhhChHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhHHhHHHH
Q 009553 350 IKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSA 429 (532)
Q Consensus 350 IKLADRLhNMRtL~~lp~ekq~riA~ETl~IYAPLA~RLGI~~iK~ELEDLsFkyL~Pe~Y~~I~~~L~e~~re~~I~~v 429 (532)
-+|||++...-. ++.++++++ .|+.++-.-|-.-+ .-|+.|+|-+-++ -+.-.++++.+++..||-|+.+-
T Consensus 170 ~~Lad~ia~~l~---l~~~eKQ~L-Le~~d~~~Rl~~l~--~lL~~e~e~~~l~---~~I~~~v~~~~~k~Qrey~LrEQ 240 (252)
T 3ljc_A 170 ARLADTIAAHMP---LKLADKQSV-LEMSDVNERLEYLM--AMMESEIDLLQVE---KRIRNRVKKQMEKSQREYYLNEQ 240 (252)
T ss_dssp HHHHHHHHHTSC---CCHHHHHHH-HHCCCHHHHHHHHH--HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC---CCHHHHHHH-HhcCCHHHHHHHHH--HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 377888776543 344444443 34444443333222 2466777766654 24445666666667789999999
Q ss_pred HHHHHHHHHh
Q 009553 430 IEKLEQALKD 439 (532)
Q Consensus 430 i~~L~~~L~~ 439 (532)
++.|+++|-+
T Consensus 241 lk~IqkELGe 250 (252)
T 3ljc_A 241 MKAIQKELGE 250 (252)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHhCC
Confidence 9999999865
No 32
>1ynb_A Hypothetical protein AF1432; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.76A {Archaeoglobus fulgidus} SCOP: a.211.1.1 PDB: 1yoy_A
Probab=32.19 E-value=75 Score=29.55 Aligned_cols=34 Identities=26% Similarity=0.402 Sum_probs=25.9
Q ss_pred cchhHHHHHHHHH---HHH-hCCCH----HHHHHHHhhcccc
Q 009553 253 DPYLLHCVETAML---LAA-IGANS----TVVAAGLLHDTLD 286 (532)
Q Consensus 253 ePYI~HpleVA~I---La~-Lg~D~----etIaAALLHDvVE 286 (532)
+.--.|...||.+ |+. .++|. .++..||+||+.|
T Consensus 37 EsVAeHS~~vA~iA~~la~~~~vd~~~~~r~~~maL~HDl~E 78 (173)
T 1ynb_A 37 ESVAEHNFRAAIIAFILALKSGESVEKACKAATAALFHDLHE 78 (173)
T ss_dssp CBHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTTH
T ss_pred CcHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHHcchHH
Confidence 5567899999877 655 46776 3567899999987
No 33
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=32.10 E-value=57 Score=30.99 Aligned_cols=69 Identities=14% Similarity=0.153 Sum_probs=44.7
Q ss_pred HHHHHHHHhhcChhhH--HHHHHHHHHHH-hHHhHHHHHHHHHHHHHhcCc-----------ccccccccccchHHHHHH
Q 009553 395 VQLENLCFKHLNPDQH--TELSSKLVECF-DEAMVTSAIEKLEQALKDKNI-----------SFLVLCGRHKSLYSIHCK 460 (532)
Q Consensus 395 ~ELEDLsFkyL~Pe~Y--~~I~~~L~e~~-re~~I~~vi~~L~~~L~~~gI-----------~~~~V~GR~KhiYSIy~K 460 (532)
.++.+.+++||--..| .+|.++|..+. .++.|+.+++.| .+.|. .. .+..+.+...-|-++
T Consensus 61 ~~a~~~Al~~Ls~r~~S~~EL~~KL~~kg~~~e~i~~vl~~L----~~~g~ldD~rfA~~~v~~-~~~~~~~G~~~I~~e 135 (221)
T 3d5l_A 61 AKAYSRMLDYLSYQMRTESDIVKKLKEIDTPEEFVEPILKKL----RGQQLIDDHAYAASYVRT-MINTDLKGPGIIRQH 135 (221)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHHHTTCCHHHHHHHHHHH----HHTTCCCHHHHHHHHHHH-HHHHCCCCHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHhcCCCHHHHHHHHHHH----HHcCCCCHHHHHHHHHHH-HHHhccccHHHHHHH
Confidence 4556667777764444 78888887764 345555555544 44443 22 133346788899999
Q ss_pred HHhcCCCC
Q 009553 461 MLKYALPS 468 (532)
Q Consensus 461 M~kK~l~f 468 (532)
|+.||++.
T Consensus 136 L~~KGI~~ 143 (221)
T 3d5l_A 136 LRQKGIGE 143 (221)
T ss_dssp HHHTTCCH
T ss_pred HHHcCCCH
Confidence 99999986
No 34
>3irh_A HD domain protein; phosphohydrolase, dntpase, structural genomics, P protein structure initiative, midwest center for structural genomics; HET: DGT DTP; 2.40A {Enterococcus faecalis} PDB: 2o6i_A*
Probab=31.81 E-value=19 Score=38.81 Aligned_cols=32 Identities=25% Similarity=0.255 Sum_probs=22.0
Q ss_pred chhHHHHHHHHHHHHh----C------------CCH----HHHHHHHhhccc
Q 009553 254 PYLLHCVETAMLLAAI----G------------ANS----TVVAAGLLHDTL 285 (532)
Q Consensus 254 PYI~HpleVA~ILa~L----g------------~D~----etIaAALLHDvV 285 (532)
.-+.|.++|+.+...+ + .++ .+.+||||||+=
T Consensus 86 TRf~HSLgV~~la~~i~~~l~~~~~~~~~~~~~~~~~~~~~v~~AaLlHDIG 137 (480)
T 3irh_A 86 SRFSHSLGVYEITRRICEIFQRNYSVERLGENGWNDDERLITLCAALLHDVG 137 (480)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHSBHHHHGGGSBCGGGHHHHHHHHHHTTTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCccccccccCCCHHHHHHHHHHHHHhccC
Confidence 4589999998876542 1 221 246899999963
No 35
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=31.70 E-value=27 Score=33.32 Aligned_cols=39 Identities=36% Similarity=0.414 Sum_probs=32.3
Q ss_pred HHHHHHHHhCC---CHHHHHHHHhhcccccccCCHHHHHHHhcHHH
Q 009553 261 ETAMLLAAIGA---NSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGV 303 (532)
Q Consensus 261 eVA~ILa~Lg~---D~etIaAALLHDvVEDT~vTlEeIee~FG~eV 303 (532)
.|+.+|+++|. |.+.++ |++++.....+++|.+.||+++
T Consensus 24 tv~~~l~~~g~~vidaD~ia----~~l~~~~~~~~~~i~~~fG~~~ 65 (210)
T 4i1u_A 24 TVADLFAARGASLVDTDLIA----HRITAPAGLAMPAIEQTFGPAF 65 (210)
T ss_dssp HHHHHHHHTTCEEEEHHHHH----HHHTSTTCTTHHHHHHHHCGGG
T ss_pred HHHHHHHHCCCcEEECcHHH----HHHhcCCcHHHHHHHHHhChhh
Confidence 35777888886 777776 8888888889999999999886
No 36
>3tm8_A BD1817, uncharacterized protein; HD-GYP, phosphodiesterase, unknown function, hydrolase,signa protein; 1.28A {Bdellovibrio bacteriovorus} PDB: 3tmb_A 3tmc_A 3tmd_A
Probab=30.66 E-value=1.5e+02 Score=29.49 Aligned_cols=35 Identities=29% Similarity=0.361 Sum_probs=24.2
Q ss_pred cCcchh-HHHHHHHHHHHH----hCCCH----H-HHHHHHhhccc
Q 009553 251 SGDPYL-LHCVETAMLLAA----IGANS----T-VVAAGLLHDTL 285 (532)
Q Consensus 251 SGePYI-~HpleVA~ILa~----Lg~D~----e-tIaAALLHDvV 285 (532)
...+|. .|.+.||.+... +|++. . ...||||||+=
T Consensus 162 ~~~~~~~~Hs~~Va~la~~la~~lgl~~~~~~~~l~~aaLLHDIG 206 (328)
T 3tm8_A 162 NTDKTISHHGVTVSTLSIALAQKLGITDPKKTQLLTLGALLHDYG 206 (328)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTGG
T ss_pred hcCchHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHhcCC
Confidence 344554 799999876553 67764 3 44699999973
No 37
>3u1n_A SAM domain and HD domain-containing protein 1; deoxynucleotide triphosphohydrolase, hydrolase; 3.10A {Homo sapiens}
Probab=30.16 E-value=21 Score=38.93 Aligned_cols=32 Identities=25% Similarity=0.258 Sum_probs=22.2
Q ss_pred chhHHHHHHHHHHHHhC-----------CCH----HHHHHHHhhccc
Q 009553 254 PYLLHCVETAMLLAAIG-----------ANS----TVVAAGLLHDTL 285 (532)
Q Consensus 254 PYI~HpleVA~ILa~Lg-----------~D~----etIaAALLHDvV 285 (532)
.-+.|.++|+.+...++ .+. .+.+||||||+=
T Consensus 65 TRf~HSLgV~~la~~i~~~l~~~~~~~~~~~~d~~~v~~AaLlHDiG 111 (528)
T 3u1n_A 65 NRFEHSLGVGYLAGCLVHALGEKQPELQISERDVLCVQIAGLCHDLG 111 (528)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCcccCCCHHHHHHHHHHHHHhccC
Confidence 45899999988765431 332 256799999963
No 38
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=29.98 E-value=57 Score=26.05 Aligned_cols=44 Identities=9% Similarity=0.067 Sum_probs=32.7
Q ss_pred HHHhhcChhhHHHHHHHHHHHH--hHHhHHHHHHHHHHHHHhcCcc
Q 009553 400 LCFKHLNPDQHTELSSKLVECF--DEAMVTSAIEKLEQALKDKNIS 443 (532)
Q Consensus 400 LsFkyL~Pe~Y~~I~~~L~e~~--re~~I~~vi~~L~~~L~~~gI~ 443 (532)
+-++|++--.|++|++.|.-.. -...+.++.+.|++.|++.|+.
T Consensus 46 l~l~~~~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~~~~~~ 91 (92)
T 3hug_A 46 IQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVT 91 (92)
T ss_dssp HHHHHTSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3355677778889999887543 2556788999999999887763
No 39
>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12}
Probab=29.68 E-value=27 Score=33.92 Aligned_cols=32 Identities=13% Similarity=0.175 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHh----CCCH-HHHHHHHhhccccc
Q 009553 256 LLHCVETAMLLAAI----GANS-TVVAAGLLHDTLDD 287 (532)
Q Consensus 256 I~HpleVA~ILa~L----g~D~-etIaAALLHDvVED 287 (532)
+.|.+.|+.+...+ +.|. .+.+||||||+...
T Consensus 27 ~~H~~rV~~~a~~ia~~~~~d~~~~~~AalLHDig~~ 63 (239)
T 3gw7_A 27 VCHFRRVWATAQKLAADDDVDMLVILTACYFHDIVSL 63 (239)
T ss_dssp CCHHHHHHHHHHHHTTTSCSCTTHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccc
Confidence 67999998877765 4454 46789999999764
No 40
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=29.50 E-value=1.6e+02 Score=25.92 Aligned_cols=38 Identities=11% Similarity=0.073 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhcCccccccccc--ccchHHHHHHHHhcCCCC
Q 009553 428 SAIEKLEQALKDKNISFLVLCGR--HKSLYSIHCKMLKYALPS 468 (532)
Q Consensus 428 ~vi~~L~~~L~~~gI~~~~V~GR--~KhiYSIy~KM~kK~l~f 468 (532)
.+.+++.+.+.+-...+. +. -+.+..+|++|+++|+.|
T Consensus 100 ~Vk~kil~li~~W~~~f~---~~~~l~~i~~~Y~~Lk~~G~~F 139 (140)
T 3ldz_A 100 KVCEKLKALMVEWTDEFK---NDPQLSLISAMIKNLKEQGVTF 139 (140)
T ss_dssp HHHHHHHHHHHHHHHHHT---TCGGGTHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHhC---CCCCchHHHHHHHHHHHccCcC
Confidence 445555555554443332 33 345889999999999987
No 41
>2o36_A ThiMet oligopeptidase; thermolysin-like domain, substrate-binding channel, hydrolase; 1.95A {Homo sapiens} PDB: 1s4b_P
Probab=27.28 E-value=1e+02 Score=33.96 Aligned_cols=117 Identities=10% Similarity=-0.028 Sum_probs=63.8
Q ss_pred cCCHHHHHHHhcHHHHHHHHHhhcccc-cchHHhhccccchHHHHHHHHHHHhhccCchhhHhHHhhhHhhccccCCCCH
Q 009553 289 FLSYDYIFRTFGAGVADLVEGVSKLSQ-LSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPL 367 (532)
Q Consensus 289 ~vTlEeIee~FG~eVA~LVegVTKls~-l~~~~r~~~~~~~~~qAE~lRKMLLAmaDiRVVLIKLADRLhNMRtL~~lp~ 367 (532)
.++.+++...|-..+...-..+.++.. .... +.+.+.+.++.++...|=++.+-..+++.....
T Consensus 12 ~~~~~~~~~a~~~~~~~~~~~i~~i~~~~~~~-------------~~~~~~l~~le~~~~~l~~~~~~~~~~~~~~~~-- 76 (674)
T 2o36_A 12 DLSAQQIEERTRELIEQTKRVYDQVGTQEFED-------------VSYESTLKALADVEVTYTVQRNILDFPQHVSPS-- 76 (674)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHTCCGGG-------------CCTTTTHHHHHHHHHHHHHHHHHHHSHHHHCSC--
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHccCCCC-------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--
Confidence 467888888887766665555554433 2100 011112222233344555666666666654433
Q ss_pred HHHHHHHHHhhhHHHHHHhhhChH-HHHHHHHHHH----HhhcChhhHHHHHHHHHHH
Q 009553 368 CKRQRFAKETLEIFVPLANRLGIS-TWKVQLENLC----FKHLNPDQHTELSSKLVEC 420 (532)
Q Consensus 368 ekq~riA~ETl~IYAPLA~RLGI~-~iK~ELEDLs----FkyL~Pe~Y~~I~~~L~e~ 420 (532)
++.+..+.|....++-+.+.++.. .+-..|..+. +..|.|+..+-+...|++-
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~e~~~~~~~~l~~f 134 (674)
T 2o36_A 77 KDIRTASTEADKKLSEFDVEMSMREDVYQRIVWLQEKVQKDSLRPEAARYLERLIKLG 134 (674)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSCTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcccccccCCHHHHHHHHHHHHHH
Confidence 355677778887777777666532 1222222222 1268898877777777654
No 42
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=25.78 E-value=40 Score=30.35 Aligned_cols=37 Identities=11% Similarity=-0.002 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhcCcccccccccccchHHHHHHHHhcCCCC
Q 009553 428 SAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKYALPS 468 (532)
Q Consensus 428 ~vi~~L~~~L~~~gI~~~~V~GR~KhiYSIy~KM~kK~l~f 468 (532)
++.+++.+.+++-...+ .+.++ ++..|++|+++|+.|
T Consensus 102 ~Vk~kil~li~~W~~~f---~~~p~-i~~~y~~Lk~~G~~F 138 (148)
T 1mhq_A 102 KVKGRVIEILFSWTVWF---PEDIK-IRDAYQMLKKQGIIK 138 (148)
T ss_dssp HHHHHHHHHHHHHHHHC---TTCHH-HHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHc---CCCch-HHHHHHHHHHcCCCC
Confidence 45555555555544433 35666 999999999999988
No 43
>2pgs_A Putative deoxyguanosinetriphosphate triphosphohyd; deoxyguanosinetriphosphate triphsphohydrolase, pseudomonas S PV. phaseolicola 1448A; 2.35A {Pseudomonas syringae PV}
Probab=25.58 E-value=48 Score=35.33 Aligned_cols=56 Identities=21% Similarity=0.217 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHHHhcCCccccCc-----chhHHHHHHHHHHHH----hCC--C-------------HHHHHHHHhhcc
Q 009553 229 REDFVIKAFYEAERAHRGQMRASGD-----PYLLHCVETAMLLAA----IGA--N-------------STVVAAGLLHDT 284 (532)
Q Consensus 229 d~~ll~kA~~fA~~aH~GQ~RkSGe-----PYI~HpleVA~ILa~----Lg~--D-------------~etIaAALLHDv 284 (532)
|.++|...-.|=.-.+..|.-..+. .-++|.++|+.+... ++. + .-+.+|||+||+
T Consensus 32 D~~rii~s~~frRL~~~tQv~~~~~~~~~htR~~Hsl~v~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~a~L~HDi 111 (451)
T 2pgs_A 32 DHDRIIFSGAFRRLGRKTQVHPVSSNDHIHTRLTHSLEVSCVGRSLGMRVGETLRAALPDWCDPSDLGMVVQSACLAHDI 111 (451)
T ss_dssp HHHHHHHSHHHHGGGGCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHTGGGSCTTCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHhCCHHHhhhccCCcccCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHhhcc
Confidence 3445555555555566667543322 348999999987763 321 1 146689999996
No 44
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=24.92 E-value=1e+02 Score=32.34 Aligned_cols=8 Identities=13% Similarity=-0.375 Sum_probs=3.8
Q ss_pred HHHHHHhc
Q 009553 457 IHCKMLKY 464 (532)
Q Consensus 457 Iy~KM~kK 464 (532)
-|+|++|+
T Consensus 180 ~ye~qqKQ 187 (390)
T 1deq_A 180 DYKNQQKQ 187 (390)
T ss_pred HHHHHHHH
Confidence 44455544
No 45
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=23.43 E-value=72 Score=28.62 Aligned_cols=74 Identities=14% Similarity=0.171 Sum_probs=43.9
Q ss_pred HHHHHHHHhhcChhhH--HHHHHHHHHHHh--HH-----hHHHHHHHHHHHHHhcCcc----cc--cccc---cccchHH
Q 009553 395 VQLENLCFKHLNPDQH--TELSSKLVECFD--EA-----MVTSAIEKLEQALKDKNIS----FL--VLCG---RHKSLYS 456 (532)
Q Consensus 395 ~ELEDLsFkyL~Pe~Y--~~I~~~L~e~~r--e~-----~I~~vi~~L~~~L~~~gI~----~~--~V~G---R~KhiYS 456 (532)
.++.+.+++||--..| .+|..+|..+.+ .. +-.++++.+-+.|.+.|.- |. -|.. +-+...-
T Consensus 5 ~~a~~~Al~~Ls~r~~S~~EL~~kL~~k~~~~~g~e~~~~~~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g~G~~~ 84 (159)
T 3c1d_A 5 ARLLDRAVRILAVRDHSEQELRRKLAAPIMGKNGPEEIDATAEDYERVIAWCHEHGYLDDSRFVARFIASRSRKGYGPAR 84 (159)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHHCC-----------CCHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHhhcccCccccCCCHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCCccHHH
Confidence 3556677777765444 678888876410 11 3344555555556666541 10 0222 3467888
Q ss_pred HHHHHHhcCCCC
Q 009553 457 IHCKMLKYALPS 468 (532)
Q Consensus 457 Iy~KM~kK~l~f 468 (532)
|-++|+.||++-
T Consensus 85 I~~eL~~KGI~~ 96 (159)
T 3c1d_A 85 IRQELNQKGISR 96 (159)
T ss_dssp HHHHHHHTTCCH
T ss_pred HHHHHHHcCCCH
Confidence 999999999986
No 46
>1bby_A RAP30; average structure transcription regulation, DNA- binding domain, transcription; NMR {Homo sapiens} SCOP: a.4.5.15 PDB: 2bby_A
Probab=23.42 E-value=26 Score=28.32 Aligned_cols=40 Identities=10% Similarity=0.130 Sum_probs=31.0
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHHH-hHHhHHHHHHHH
Q 009553 394 KVQLENLCFKHLNPDQHTELSSKLVECF-DEAMVTSAIEKL 433 (532)
Q Consensus 394 K~ELEDLsFkyL~Pe~Y~~I~~~L~e~~-re~~I~~vi~~L 433 (532)
+.||.|+-|+...-..|-.|+.....+. -+.|+.++++.|
T Consensus 6 ~~~l~d~lF~~Fek~~yw~lK~L~~~t~QP~~yLKeiL~~I 46 (69)
T 1bby_A 6 KQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEI 46 (69)
T ss_dssp HHHHHHHHHHHHHHCSCBCHHHHHHHCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCcHHHHHHHHcCcHHHHHHHHHHH
Confidence 6899999999888888888888877765 367766665555
No 47
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=22.91 E-value=3e+02 Score=31.31 Aligned_cols=151 Identities=14% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHHHHHhc---------HHHHHHHHHhhcccccchHHhhccccchHHHHHHHHHHHhhccCchhhHhHHhhhHhhcccc
Q 009553 292 YDYIFRTFG---------AGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTL 362 (532)
Q Consensus 292 lEeIee~FG---------~eVA~LVegVTKls~l~~~~r~~~~~~~~~qAE~lRKMLLAmaDiRVVLIKLADRLhNMRtL 362 (532)
...|.+++| ..|...|+-+..-..+++..|-++........+.+|++.-.....|-+.=|=..-+..+...
T Consensus 5 ~~~~a~~l~~~~~~~~~~~~v~~~~~ll~eg~tVPFIarYRKe~tg~Ld~~~lr~i~~~~~~~~~L~~Rk~~il~~i~~q 84 (785)
T 3bzc_A 5 NTRIAEELSALPSGRVQPQQVAAAVALLDEGSTVPFIARYRKEVTGSLDDTQLRMLEERLRYLRELEERRGAILASIEEQ 84 (785)
T ss_dssp HHHHHHHHTTSTTCCCCHHHHHHHHHHHHTTCCHHHHHHHCHHHHTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCcccccCcCHHHHHHHHHHHhCCCCCCchHHhhhHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q ss_pred CCCCHHHHHHHH-----HHhhhHHHHH----------HhhhChHHHHHHH--------HHHHHhhcChh-hHHHHHHHHH
Q 009553 363 DALPLCKRQRFA-----KETLEIFVPL----------ANRLGISTWKVQL--------ENLCFKHLNPD-QHTELSSKLV 418 (532)
Q Consensus 363 ~~lp~ekq~riA-----~ETl~IYAPL----------A~RLGI~~iK~EL--------EDLsFkyL~Pe-~Y~~I~~~L~ 418 (532)
..++++-+..+. .|--+||.|. |...||..+..-| |+++-+|++++ .+...+..|+
T Consensus 85 g~lt~~l~~~i~~a~t~~eleDly~pyk~krrtka~~a~e~GLeplA~~l~~~~~~~p~~~A~~~v~~~~~~~~~~~al~ 164 (785)
T 3bzc_A 85 GKLTPELARDIKLADTKTRLEDLYLPYKQKRRTKGQIALEAGLGALADALFDDPTLVPESEAARFVDAEKGFADVKAVLE 164 (785)
T ss_dssp TCCCHHHHHHHHHCCSHHHHHHHHGGGSCCCCCHHHHHHHTTTHHHHHHHHHCTTSCHHHHHHTTCCSSSSCCSHHHHHH
T ss_pred cCCCHHHHHHHHhcCcHHHHHHHHhccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCHHHHHHHHhCcccCCCCHHHHHH
Q ss_pred HHHh---HHhHH--HHHHHHHHHHHhcCc
Q 009553 419 ECFD---EAMVT--SAIEKLEQALKDKNI 442 (532)
Q Consensus 419 e~~r---e~~I~--~vi~~L~~~L~~~gI 442 (532)
.-+. +++-+ .+.+.|++.+.+.|+
T Consensus 165 ga~~ilae~is~~~~~r~~~R~~~~~~~~ 193 (785)
T 3bzc_A 165 GAKYILMERFAEDATLLDKLRVFMKNEAT 193 (785)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCE
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhCeE
No 48
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=21.71 E-value=1.3e+02 Score=27.26 Aligned_cols=54 Identities=13% Similarity=0.138 Sum_probs=31.1
Q ss_pred hChHHHHHHHHHHHHhhcChhhHHHHHHHH------------HHHHhHHhHHHHHHHHHHHHHhcCc
Q 009553 388 LGISTWKVQLENLCFKHLNPDQHTELSSKL------------VECFDEAMVTSAIEKLEQALKDKNI 442 (532)
Q Consensus 388 LGI~~iK~ELEDLsFkyL~Pe~Y~~I~~~L------------~e~~re~~I~~vi~~L~~~L~~~gI 442 (532)
-|+..|+.||+.|-- .-.|+.-+.|+..- ..+++...++.=+..|++.|+.+.|
T Consensus 9 ~g~~~L~~EL~~L~~-~~R~~i~~~i~~Ar~~GDlsENaeY~aak~~q~~~e~rI~~L~~~L~~A~v 74 (158)
T 2p4v_A 9 EGYEKLKQELNYLWR-EERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCMENLKI 74 (158)
T ss_dssp HHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCEE
T ss_pred HHHHHHHHHHHHHHh-cchHHHHHHHHHHHhCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhCee
Confidence 367788888888832 23455544443322 1223445566666777777766554
No 49
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=20.95 E-value=87 Score=27.83 Aligned_cols=45 Identities=20% Similarity=0.212 Sum_probs=27.8
Q ss_pred ChHHHHHHHHHHHHhh----cChhhHHHHHHHHHHHHhHHhHHHHHHHHHH
Q 009553 389 GISTWKVQLENLCFKH----LNPDQHTELSSKLVECFDEAMVTSAIEKLEQ 435 (532)
Q Consensus 389 GI~~iK~ELEDLsFky----L~Pe~Y~~I~~~L~e~~re~~I~~vi~~L~~ 435 (532)
.+..|+|.||||--.. -+|..|. |... +-.+|..+|..+.++|++
T Consensus 75 ~l~sie~dLeDLe~sI~ivE~np~kF~-l~~~-Ei~~Rr~fV~~~r~~I~~ 123 (130)
T 4dnd_A 75 GLRSIEWDLEDLEETIGIVEANPGKFK-LPAG-DLQERKVFVERMREAVQE 123 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHC-CCHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHhcC-CCHH-HHHHHHHHHHHHHHHHHH
Confidence 3569999999997432 4677773 3322 112356677776666654
No 50
>2o3e_A Neurolysin; thermolysin-like domain, substrate-binding channel, hydrolase; 2.20A {Rattus norvegicus} PDB: 1i1i_P
Probab=20.76 E-value=1.8e+02 Score=31.99 Aligned_cols=117 Identities=11% Similarity=0.013 Sum_probs=64.7
Q ss_pred cCCHHHHHHHhcHHHHHHHHHhhcccc-cchHHhhccccchHHHHHHHHHHHhhccCchhhHhHHhhhHhhccccCCCCH
Q 009553 289 FLSYDYIFRTFGAGVADLVEGVSKLSQ-LSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPL 367 (532)
Q Consensus 289 ~vTlEeIee~FG~eVA~LVegVTKls~-l~~~~r~~~~~~~~~qAE~lRKMLLAmaDiRVVLIKLADRLhNMRtL~~lp~ 367 (532)
.++.+++...|-..+...-..+.++.. .... +.+.+.+.++.++...+=++.+-.++++.....
T Consensus 28 ~~~~~~~~~a~~~~~~~~~~~i~~i~~~~~~~-------------~t~~~~i~~le~~~~~l~~~~~~~~~~~~~~~~-- 92 (678)
T 2o3e_A 28 DLSPEQIKTRTEQLIAQTKQVYDTVGTIALKE-------------VTYENCLQVLADIEVTYIVERTMLDFPQHVSSD-- 92 (678)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHTTSCGGG-------------CCTTTTHHHHHHHHHHHHHHHHHHHSHHHHCSC--
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHccCCCc-------------cCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--
Confidence 467888888887776666555555543 1100 011112222233344555666666666654433
Q ss_pred HHHHHHHHHhhhHHHHHHhhhChH-HHHHHHHHHHH----hhcChhhHHHHHHHHHHH
Q 009553 368 CKRQRFAKETLEIFVPLANRLGIS-TWKVQLENLCF----KHLNPDQHTELSSKLVEC 420 (532)
Q Consensus 368 ekq~riA~ETl~IYAPLA~RLGI~-~iK~ELEDLsF----kyL~Pe~Y~~I~~~L~e~ 420 (532)
++.+..+.|....++-+.+.++.. .+-..|..+.- ..|.|+..+-+...|++-
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~e~~r~~~~~l~~f 150 (678)
T 2o3e_A 93 REVRAASTEADKKLSRFDIEMSMREDVFQRIVHLQETCDLEKIKPEARRYLEKSIKMG 150 (678)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcccccccCCHHHHHHHHHHHHHH
Confidence 446677778877777777766542 22222333322 248888877777777654
No 51
>3hc1_A Uncharacterized HDOD domain protein; HDOD domain protein with unknown function, STRU genomics, joint center for structural genomics; 1.90A {Geobacter sulfurreducens}
Probab=20.17 E-value=1.5e+02 Score=29.02 Aligned_cols=33 Identities=33% Similarity=0.397 Sum_probs=24.1
Q ss_pred cchhHHHHHHHHHHHH----hCC-C-HHHHHHHHhhccc
Q 009553 253 DPYLLHCVETAMLLAA----IGA-N-STVVAAGLLHDTL 285 (532)
Q Consensus 253 ePYI~HpleVA~ILa~----Lg~-D-~etIaAALLHDvV 285 (532)
..++.|.+.||.+... +|. + .....||||||+=
T Consensus 117 ~~~~~hs~~va~~a~~la~~~~~~~~~~~~~agllHDIG 155 (305)
T 3hc1_A 117 STLWAHSLGVARIAKLIAERTGFLNPVNVYVAGLLHDVG 155 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence 4568999999876553 465 4 4567899999964
Done!