Query 009554
Match_columns 532
No_of_seqs 648 out of 4656
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 07:48:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009554.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009554hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yyh_A HN1;, notch 1, ankyrin 100.0 5.6E-33 1.9E-37 269.9 16.4 218 162-388 9-247 (253)
2 2xai_A ASB-9, ankyrin repeat a 100.0 3.6E-32 1.2E-36 265.6 21.4 232 164-410 4-243 (261)
3 1wdy_A 2-5A-dependent ribonucl 100.0 9.5E-32 3.2E-36 264.1 20.9 219 163-392 39-281 (285)
4 3b7b_A Euchromatic histone-lys 100.0 8.4E-32 2.9E-36 258.2 19.9 205 163-377 11-223 (237)
5 2fo1_E LIN-12 protein; beta-ba 100.0 1.7E-32 5.7E-37 282.3 15.8 221 162-389 124-371 (373)
6 1oy3_D Transcription factor in 100.0 1E-31 3.6E-36 264.0 20.5 209 163-375 9-269 (282)
7 1k1a_A B-cell lymphoma 3-encod 100.0 1.9E-32 6.4E-37 263.1 14.5 219 162-387 8-239 (241)
8 1n11_A Ankyrin; clathrin, BAND 100.0 8.9E-32 3E-36 282.3 20.9 314 164-498 48-397 (437)
9 4b93_B Ankyrin repeat domain-c 100.0 1.4E-32 4.7E-37 270.0 13.6 202 163-375 11-229 (269)
10 1wdy_A 2-5A-dependent ribonucl 100.0 6.1E-31 2.1E-35 258.3 22.6 220 163-391 5-247 (285)
11 3ljn_A Hypothetical protein; a 100.0 1.9E-31 6.6E-36 273.0 19.4 224 161-390 18-270 (364)
12 3aji_A 26S proteasome non-ATPa 100.0 2.5E-31 8.4E-36 253.9 17.6 213 164-387 7-228 (231)
13 4g8k_A 2-5A-dependent ribonucl 100.0 2.9E-31 1E-35 268.7 18.3 254 124-391 26-300 (337)
14 1n11_A Ankyrin; clathrin, BAND 100.0 5E-31 1.7E-35 276.6 19.9 217 164-391 147-371 (437)
15 2f8y_A Notch homolog 1, transl 100.0 3.9E-31 1.3E-35 251.1 16.1 208 175-391 3-218 (223)
16 3utm_A Tankyrase-1; tankyrase, 100.0 2.3E-30 7.7E-35 262.3 22.3 219 162-391 23-307 (351)
17 3d9h_A CDNA FLJ77766, highly s 100.0 7.7E-31 2.6E-35 259.7 17.9 209 163-386 59-275 (285)
18 2dzn_A Probable 26S proteasome 100.0 9.1E-31 3.1E-35 249.3 17.6 202 164-373 3-217 (228)
19 4g8k_A 2-5A-dependent ribonucl 100.0 2.9E-30 1E-34 261.3 22.2 214 163-385 25-260 (337)
20 3d9h_A CDNA FLJ77766, highly s 100.0 3.3E-30 1.1E-34 255.1 18.8 220 161-392 13-250 (285)
21 1oy3_D Transcription factor in 100.0 4.3E-30 1.5E-34 252.4 18.7 191 195-394 6-255 (282)
22 1s70_B 130 kDa myosin-binding 100.0 1.9E-30 6.6E-35 257.6 14.3 200 163-373 40-274 (299)
23 3utm_A Tankyrase-1; tankyrase, 100.0 2.7E-29 9.3E-34 254.3 22.4 215 163-387 58-332 (351)
24 3eu9_A Huntingtin-interacting 100.0 1.5E-29 5.2E-34 242.0 19.3 217 162-389 8-235 (240)
25 2xai_A ASB-9, ankyrin repeat a 100.0 1.3E-29 4.5E-34 247.3 17.1 186 197-392 2-194 (261)
26 1yyh_A HN1;, notch 1, ankyrin 100.0 1.3E-29 4.5E-34 246.1 15.0 193 188-391 2-217 (253)
27 2rfa_A Transient receptor pote 100.0 2.6E-29 8.8E-34 240.2 16.4 170 217-390 27-223 (232)
28 4gpm_A Engineered protein OR26 100.0 5.7E-29 2E-33 226.6 16.7 154 230-392 7-164 (169)
29 3b7b_A Euchromatic histone-lys 100.0 1.5E-28 5.2E-33 235.5 20.1 193 188-391 3-204 (237)
30 1k1a_A B-cell lymphoma 3-encod 100.0 2.5E-28 8.6E-33 234.2 20.8 189 195-392 6-211 (241)
31 4b93_B Ankyrin repeat domain-c 100.0 5.4E-29 1.9E-33 244.3 16.3 189 197-393 10-214 (269)
32 3kea_A K1L; tropism, ANK repea 100.0 1.9E-29 6.6E-34 249.7 12.9 207 163-389 31-246 (285)
33 3kea_A K1L; tropism, ANK repea 100.0 1.5E-28 5E-33 243.3 17.6 206 172-393 9-224 (285)
34 3hra_A Ankyrin repeat family p 100.0 2.3E-28 7.8E-33 228.1 18.0 181 199-387 6-201 (201)
35 3ljn_A Hypothetical protein; a 100.0 1.1E-29 3.6E-34 260.1 7.8 226 147-385 36-310 (364)
36 2dzn_A Probable 26S proteasome 100.0 4.3E-28 1.5E-32 230.7 18.2 188 198-392 2-203 (228)
37 1ikn_D Protein (I-kappa-B-alph 100.0 2.3E-29 7.9E-34 241.4 9.3 187 196-391 6-211 (236)
38 2fo1_E LIN-12 protein; beta-ba 100.0 7.5E-29 2.6E-33 255.0 12.6 216 163-391 94-340 (373)
39 2etb_A Transient receptor pote 100.0 8.1E-29 2.8E-33 240.6 11.9 196 163-390 2-247 (256)
40 2f8y_A Notch homolog 1, transl 100.0 1.7E-27 5.9E-32 225.9 19.5 204 145-359 5-219 (223)
41 4gpm_A Engineered protein OR26 100.0 9.4E-28 3.2E-32 218.5 16.4 156 164-359 5-164 (169)
42 3aji_A 26S proteasome non-ATPa 100.0 1.8E-27 6.1E-32 227.1 18.3 184 199-391 7-199 (231)
43 1s70_B 130 kDa myosin-binding 100.0 9.4E-28 3.2E-32 238.2 16.6 188 197-392 39-260 (299)
44 3jxi_A Vanilloid receptor-rela 99.9 7.5E-28 2.6E-32 234.2 13.6 198 163-390 5-251 (260)
45 1sw6_A Regulatory protein SWI6 99.9 3.1E-28 1.1E-32 245.8 10.8 191 164-375 98-327 (327)
46 2pnn_A Transient receptor pote 99.9 6.2E-28 2.1E-32 236.8 12.2 127 263-389 96-258 (273)
47 1ikn_D Protein (I-kappa-B-alph 99.9 2.7E-28 9.4E-33 233.9 7.1 206 163-373 8-228 (236)
48 2rfa_A Transient receptor pote 99.9 9.4E-27 3.2E-31 222.3 15.5 188 164-362 4-228 (232)
49 3hra_A Ankyrin repeat family p 99.9 2.3E-26 7.8E-31 214.5 17.6 182 163-354 5-201 (201)
50 2rfm_A Putative ankyrin repeat 99.9 7.8E-27 2.7E-31 216.5 13.0 159 220-387 28-190 (192)
51 4hbd_A KN motif and ankyrin re 99.9 5.1E-27 1.7E-31 231.1 11.9 180 200-387 78-273 (276)
52 3v31_A Ankyrin repeat family A 99.9 2.9E-26 9.8E-31 207.6 14.1 155 226-389 2-160 (167)
53 3v30_A DNA-binding protein rfx 99.9 3.4E-26 1.2E-30 208.2 13.5 157 227-391 2-162 (172)
54 2y1l_E Darpin-8.4; hydrolase-i 99.9 8.7E-26 3E-30 205.2 16.1 153 226-387 13-169 (169)
55 2etb_A Transient receptor pote 99.9 2.2E-26 7.4E-31 223.5 12.5 183 147-358 22-248 (256)
56 1ihb_A P18-INK4C(INK6), cyclin 99.9 1.1E-25 3.7E-30 202.5 14.7 153 227-389 5-162 (162)
57 2pnn_A Transient receptor pote 99.9 2.4E-26 8.2E-31 225.5 11.1 198 163-369 13-272 (273)
58 3twr_A Tankyrase-2; ankyrin re 99.9 6.8E-26 2.3E-30 204.7 11.8 156 224-388 5-164 (165)
59 3f6q_A Integrin-linked protein 99.9 9.5E-26 3.2E-30 206.8 12.6 159 226-392 4-166 (179)
60 3eu9_A Huntingtin-interacting 99.9 3.4E-25 1.2E-29 211.7 16.5 187 196-391 7-204 (240)
61 1d9s_A Cyclin-dependent kinase 99.9 1E-25 3.6E-30 197.1 11.2 128 259-388 3-135 (136)
62 1awc_B Protein (GA binding pro 99.9 3.1E-25 1.1E-29 198.0 13.9 146 228-383 3-152 (153)
63 1sw6_A Regulatory protein SWI6 99.9 2.2E-26 7.5E-31 232.3 5.0 226 147-393 35-312 (327)
64 1bd8_A P19INK4D CDK4/6 inhibit 99.9 1.2E-24 4.1E-29 194.5 15.3 149 227-385 2-154 (156)
65 3v30_A DNA-binding protein rfx 99.9 8.9E-25 3E-29 198.8 12.2 159 200-367 4-171 (172)
66 1ihb_A P18-INK4C(INK6), cyclin 99.9 4.9E-24 1.7E-28 191.6 16.8 148 199-356 6-162 (162)
67 4hbd_A KN motif and ankyrin re 99.9 1.1E-24 3.8E-29 214.4 13.2 180 165-354 78-273 (276)
68 2jab_A H10-2-G3; HER2, darpin, 99.9 5.4E-24 1.9E-28 186.1 12.7 123 264-387 10-136 (136)
69 2rfm_A Putative ankyrin repeat 99.9 8.6E-24 3E-28 195.9 13.4 150 196-354 33-190 (192)
70 2y1l_E Darpin-8.4; hydrolase-i 99.9 3.4E-23 1.2E-27 187.9 16.5 152 163-354 14-169 (169)
71 3t8k_A Uncharacterized protein 99.9 1.9E-24 6.6E-29 199.8 8.2 149 227-386 6-176 (186)
72 1n0r_A 4ANK, 4 ankyrin repeats 99.9 2.9E-23 9.9E-28 177.8 14.2 122 267-389 1-126 (126)
73 1ycs_B 53BP2, P53BP2; ankyrin 99.9 3.9E-24 1.3E-28 205.8 9.6 157 225-391 3-166 (239)
74 3v31_A Ankyrin repeat family A 99.9 9.9E-24 3.4E-28 190.8 11.6 152 198-358 3-162 (167)
75 3jxi_A Vanilloid receptor-rela 99.9 4.1E-24 1.4E-28 207.8 9.7 124 265-389 43-210 (260)
76 3c5r_A BARD-1, BRCA1-associate 99.9 2.3E-24 8E-29 188.5 6.6 118 263-381 5-126 (137)
77 2vge_A RELA-associated inhibit 99.9 3.5E-26 1.2E-30 218.9 -6.0 192 180-383 2-207 (229)
78 1bi7_B P16INK4A, MTS1, multipl 99.9 6.5E-24 2.2E-28 190.2 8.9 130 261-392 5-139 (156)
79 3twr_A Tankyrase-2; ankyrin re 99.9 3E-23 1E-27 187.3 13.0 128 264-392 4-136 (165)
80 3f6q_A Integrin-linked protein 99.9 3E-23 1E-27 190.1 12.1 136 220-364 32-171 (179)
81 1ycs_B 53BP2, P53BP2; ankyrin 99.9 1.9E-24 6.6E-29 207.9 3.7 168 199-376 6-193 (239)
82 1bi7_B P16INK4A, MTS1, multipl 99.9 2.8E-23 9.5E-28 186.0 9.8 139 223-371 8-151 (156)
83 1bd8_A P19INK4D CDK4/6 inhibit 99.9 4.9E-22 1.7E-26 177.4 17.3 144 199-353 3-155 (156)
84 1awc_B Protein (GA binding pro 99.9 1.3E-22 4.3E-27 181.0 12.8 123 268-391 2-127 (153)
85 3aaa_C Myotrophin, protein V-1 99.9 1.4E-22 4.9E-27 173.7 12.0 107 265-372 4-114 (123)
86 1d9s_A Cyclin-dependent kinase 99.9 9.5E-23 3.3E-27 178.1 10.1 130 217-356 2-136 (136)
87 3ehr_A Osteoclast-stimulating 99.9 4.6E-23 1.6E-27 195.6 6.7 129 262-390 67-199 (222)
88 2vge_A RELA-associated inhibit 99.9 8.6E-23 2.9E-27 195.2 8.2 132 260-392 13-151 (229)
89 3deo_A Signal recognition part 99.9 1.3E-22 4.4E-27 186.8 8.2 114 264-379 40-158 (183)
90 3htm_A Speckle-type POZ protei 99.8 1.9E-21 6.5E-26 177.3 9.9 149 46-228 19-167 (172)
91 3ui2_A Signal recognition part 99.8 2.4E-21 8.1E-26 187.0 10.2 111 264-376 41-156 (244)
92 1n0r_A 4ANK, 4 ankyrin repeats 99.8 1.1E-20 3.7E-25 161.7 12.3 122 226-356 1-126 (126)
93 1n0q_A 3ANK, 3 ankyrin repeats 99.8 1.5E-20 5.1E-25 152.7 11.3 91 297-388 2-92 (93)
94 2jab_A H10-2-G3; HER2, darpin, 99.8 1.3E-20 4.5E-25 164.4 11.6 121 225-354 12-136 (136)
95 3hve_A Gigaxonin; ubiquitin, c 99.8 5.7E-21 2E-25 185.7 9.3 173 42-247 12-184 (256)
96 2b0o_E UPLC1; arfgap, structur 99.8 4.6E-21 1.6E-25 190.9 8.7 136 227-377 151-299 (301)
97 1dcq_A PYK2-associated protein 99.8 2.6E-20 8.9E-25 183.3 13.9 125 265-390 127-264 (278)
98 3t8k_A Uncharacterized protein 99.8 1.9E-21 6.5E-26 179.6 5.3 153 200-361 8-184 (186)
99 2aja_A Ankyrin repeat family p 99.8 3.4E-22 1.2E-26 204.8 -0.5 202 164-386 93-341 (376)
100 1n0q_A 3ANK, 3 ankyrin repeats 99.8 3.1E-20 1.1E-24 150.8 11.3 89 267-356 1-93 (93)
101 2l6b_A NR1C; ankyrin, consensu 99.8 6.7E-21 2.3E-25 161.1 7.2 105 263-368 4-112 (115)
102 2ppi_A Gigaxonin; BTB domain, 99.8 6.6E-20 2.3E-24 161.7 12.8 117 41-186 27-143 (144)
103 1r29_A B-cell lymphoma 6 prote 99.8 6.6E-20 2.3E-24 158.3 12.5 113 42-186 10-123 (127)
104 4eoz_A Speckle-type POZ protei 99.8 8.3E-21 2.9E-25 167.9 6.4 135 46-214 10-144 (145)
105 3jue_A Arfgap with coiled-coil 99.8 5.4E-20 1.8E-24 187.7 13.3 122 265-387 196-324 (368)
106 3lvq_E ARF-GAP with SH3 domain 99.8 5E-20 1.7E-24 196.4 13.4 123 269-392 133-268 (497)
107 2if5_A Zinc finger and BTB dom 99.8 6.3E-20 2.2E-24 156.8 11.4 112 43-185 7-118 (120)
108 3i3n_A Kelch-like protein 11; 99.8 9.5E-21 3.2E-25 186.5 6.4 177 42-247 13-192 (279)
109 2aja_A Ankyrin repeat family p 99.8 1.2E-21 4.2E-26 200.5 -0.1 221 144-383 105-368 (376)
110 2b0o_E UPLC1; arfgap, structur 99.8 8.6E-20 3E-24 181.6 12.9 120 268-388 151-283 (301)
111 2yy9_A Zinc finger and BTB dom 99.8 8.4E-20 2.9E-24 159.3 9.8 112 42-188 6-117 (135)
112 3c5r_A BARD-1, BRCA1-associate 99.8 1.6E-20 5.5E-25 163.9 5.2 130 217-356 1-134 (137)
113 3b84_A Zinc finger and BTB dom 99.8 1.4E-19 4.7E-24 154.4 10.6 111 43-188 6-116 (119)
114 3ehr_A Osteoclast-stimulating 99.8 3.1E-20 1.1E-24 176.1 6.1 133 224-365 70-207 (222)
115 2vpk_A Myoneurin; transcriptio 99.8 2.3E-19 7.9E-24 152.3 10.7 109 43-186 4-114 (116)
116 2z8h_A Transcription regulator 99.8 4.5E-19 1.5E-23 155.4 12.3 114 43-188 18-131 (138)
117 2q81_A MIZ-1 protein; BTB/POZ 99.8 3.2E-19 1.1E-23 152.1 10.2 107 43-185 9-115 (119)
118 3deo_A Signal recognition part 99.8 1.2E-19 4.2E-24 166.7 7.6 134 225-385 42-180 (183)
119 1buo_A POZ domain, protein (pr 99.8 4.5E-19 1.6E-23 151.6 10.1 108 43-186 10-117 (121)
120 3lvq_E ARF-GAP with SH3 domain 99.8 5E-19 1.7E-23 188.6 12.6 130 229-373 134-276 (497)
121 3ohu_A Transcription regulator 99.8 1E-19 3.4E-24 156.7 5.8 111 42-184 13-123 (125)
122 3hqi_A Speckle-type POZ protei 99.8 2.6E-19 8.9E-24 179.1 9.1 149 45-227 158-306 (312)
123 1dcq_A PYK2-associated protein 99.8 1.8E-18 6.1E-23 170.1 13.7 187 164-357 67-264 (278)
124 2ihc_A Transcription regulator 99.8 2.1E-19 7.1E-24 154.5 5.1 111 43-186 11-122 (124)
125 3jue_A Arfgap with coiled-coil 99.8 2.1E-18 7.2E-23 175.9 12.6 144 223-375 195-348 (368)
126 2vkp_A BTB/POZ domain-containi 99.8 1.1E-18 3.7E-23 146.4 8.3 100 55-186 2-105 (109)
127 3ga1_A Nucleus accumbens-assoc 99.8 5.6E-19 1.9E-23 152.9 6.1 111 43-188 15-126 (129)
128 3aaa_C Myotrophin, protein V-1 99.8 4.3E-18 1.5E-22 145.6 11.4 98 293-391 3-100 (123)
129 3fkc_A Transcriptional regulat 99.7 3E-18 1E-22 145.3 9.6 103 42-180 12-115 (116)
130 2l6b_A NR1C; ankyrin, consensu 99.7 1.5E-18 5E-23 146.5 7.7 99 293-392 5-103 (115)
131 2zgd_A 3 repeat synthetic anky 99.7 4.6E-18 1.6E-22 142.6 10.0 89 293-382 20-108 (110)
132 3ui2_A Signal recognition part 99.7 2E-18 6.8E-23 166.4 7.4 137 225-388 43-184 (244)
133 2zgd_A 3 repeat synthetic anky 99.7 7E-17 2.4E-21 135.4 9.3 89 261-350 17-109 (110)
134 3m5b_A Zinc finger and BTB dom 99.7 3.8E-17 1.3E-21 138.9 6.4 100 46-187 17-116 (119)
135 2ast_A S-phase kinase-associat 98.5 1.2E-07 4E-12 84.3 6.5 113 66-188 3-124 (159)
136 4ajy_C Transcription elongatio 98.3 8.6E-07 2.9E-11 71.6 6.8 82 66-174 4-96 (97)
137 1fs1_B SKP1, cyclin A/CDK2-ass 97.9 1.4E-05 4.9E-10 69.1 5.9 110 66-189 4-120 (141)
138 2p1m_A SKP1-like protein 1A; F 97.6 1.6E-05 5.5E-10 70.4 1.2 111 66-189 6-124 (160)
139 3drz_A BTB/POZ domain-containi 97.1 0.0017 5.9E-08 53.0 8.1 95 65-185 7-103 (107)
140 1hv2_A Elongin C, ELC1; protei 96.7 0.0022 7.4E-08 51.6 5.5 92 66-175 6-99 (99)
141 2fnj_C Transcription elongatio 96.6 0.0039 1.3E-07 49.8 6.0 90 66-175 3-96 (96)
142 3v7d_A Suppressor of kinetocho 95.0 0.051 1.7E-06 48.1 7.2 116 65-188 8-131 (169)
143 3drx_A BTB/POZ domain-containi 94.4 0.098 3.3E-06 47.3 7.5 95 66-186 14-110 (202)
144 1vcb_B Protein (elongin C); tu 92.1 0.12 4E-06 42.3 3.8 90 66-175 19-112 (112)
145 3kvt_A Potassium channel prote 78.0 1.1 3.8E-05 36.6 2.4 84 66-177 7-91 (115)
146 1t1d_A Protein (potassium chan 77.2 3.9 0.00013 32.3 5.4 86 66-179 3-90 (100)
147 1s1g_A Potassium voltage-gated 75.0 2.5 8.6E-05 34.9 3.9 85 65-178 14-99 (124)
148 2nz0_B Potassium voltage-gated 71.2 3.4 0.00011 35.0 3.8 85 65-178 36-121 (140)
149 2eqx_A Kelch repeat and BTB do 48.8 7.7 0.00026 30.7 2.0 52 195-247 10-61 (105)
150 1nn7_A Potassium channel KV4.2 46.1 8.3 0.00028 30.7 1.7 84 66-178 2-86 (105)
151 3u5c_f 40S ribosomal protein S 40.1 12 0.00041 32.0 1.9 23 502-525 118-142 (152)
152 2k4x_A 30S ribosomal protein S 37.5 13 0.00043 25.8 1.3 23 502-525 18-40 (55)
153 1gp8_A Protein (scaffolding pr 28.0 42 0.0014 21.1 2.3 19 271-289 16-34 (40)
154 1whm_A Cylindromatosis tumor s 25.7 14 0.00047 28.5 -0.2 42 455-510 25-71 (92)
155 2xzm_9 RPS31E; ribosome, trans 24.4 29 0.001 30.7 1.7 23 502-525 113-135 (189)
No 1
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=5.6e-33 Score=269.94 Aligned_cols=218 Identities=14% Similarity=0.102 Sum_probs=166.4
Q ss_pred hHHHHHHHHHhhC-------------cHHHHHHHHHcCCCcccccCCCCcHHHHHHHHHhCcHH----HHHccccccccc
Q 009554 162 FAVEMMYASSIFE-------------LPELVSLFQRRLLNFVGKAVAEDIIPILLAAFHCQLSQ----LLAQCVDRIVRS 224 (532)
Q Consensus 162 ~~~~~L~~A~~~~-------------~~~lv~~ll~~~~~i~~~~~~~n~~t~L~~A~~~~~~~----Ll~~~~~~~~~~ 224 (532)
...++||+|+..| ..+++++|++.+.+++... ..+|.||||+|+..|..+ |+++|++++.++
T Consensus 9 ~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~ 87 (253)
T 1yyh_A 9 DGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQT-DRTGETALHLAARYSRSDAAKRLLEASADANIQD 87 (253)
T ss_dssp -------------------------------------------CC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred CCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCccccc-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Confidence 3589999999977 8999999999999986531 234599999999999844 889999999999
Q ss_pred ccCcchhhhcCCcchHHHHHHHHhhcCCCCCCCCccCCcccccCCcHHHHHhcCCCHHHHHHHHhcC-CC---CCCCchH
Q 009554 225 DLDTISIEKELPTEVAEEIRMLRLKSFPDDENTAVEVDPLREKRIKRIHKALDSDDVELVRLLLSES-EI---TLDEANA 300 (532)
Q Consensus 225 ~~~~t~L~~a~~~~~~~~i~~lL~~~~~~~~~~~~~in~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~i---n~~g~t~ 300 (532)
..|.||||.|+..+. .+++++|...+. .+++..+..|.||||+|+..|+.+++++|++.| ++ |..|+||
T Consensus 88 ~~g~t~L~~A~~~~~-~~~v~~Ll~~~~------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~ 160 (253)
T 1yyh_A 88 NMGRTPLHAAVSADA-QGVFQILIRNRA------TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSA 160 (253)
T ss_dssp TTSCCHHHHHHHHTC-HHHHHHHHHSTT------SCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBH
T ss_pred CCCCCHHHHHHHcCC-HHHHHHHHHcCC------CCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCH
Confidence 999999999999998 677777743322 248889999999999999999999999999999 54 5789999
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCCcccH
Q 009554 301 LHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDLTLDGRSAVSICRRLTRPKDY 380 (532)
Q Consensus 301 Lh~A~~~g~~~~v~~LL~~~~advn~~d~~G~TpLh~Aa~~~~~~iv~~LL~~gad~~~~d~~G~TpL~~A~~~~~~~~~ 380 (532)
||+|+..|+.+++++|++.| ++++.+|..|+||||+|+.+|+.+++++|+++|++++.+|..|+||||+|++.|+.+++
T Consensus 161 L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~ 239 (253)
T 1yyh_A 161 LHWAAAVNNVDAAVVLLKNG-ANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIV 239 (253)
T ss_dssp HHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHH
Confidence 99999999999999999987 99999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHhcCC
Q 009554 381 QAKTEQGK 388 (532)
Q Consensus 381 ~~~~~~G~ 388 (532)
..+.....
T Consensus 240 ~~l~~~~~ 247 (253)
T 1yyh_A 240 RLLDLEHH 247 (253)
T ss_dssp HHHHC---
T ss_pred HHHHHHhh
Confidence 88775443
No 2
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=3.6e-32 Score=265.58 Aligned_cols=232 Identities=16% Similarity=0.058 Sum_probs=197.6
Q ss_pred HHHHHHHHhhCcHHHHHHHHHcCCCcccccCCCCcHHHHHHHHHhCcHH----HHHcccccccccccCcchhhhcCCcch
Q 009554 164 VEMMYASSIFELPELVSLFQRRLLNFVGKAVAEDIIPILLAAFHCQLSQ----LLAQCVDRIVRSDLDTISIEKELPTEV 239 (532)
Q Consensus 164 ~~~L~~A~~~~~~~lv~~ll~~~~~i~~~~~~~n~~t~L~~A~~~~~~~----Ll~~~~~~~~~~~~~~t~L~~a~~~~~ 239 (532)
.++||.|+..|..++++++++++.+++.+|.. +.||||+|+..|+.+ |+++|++++.++..|.||||.|+..+.
T Consensus 4 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 81 (261)
T 2xai_A 4 WSPMHEAAIHGHQLSLRNLISQGWAVNIITAD--HVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGS 81 (261)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTT--CCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred CCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC
Confidence 68999999999999999999999999988554 499999999999844 889999999999999999999999998
Q ss_pred HHHHHHHHhhcCCCCCCCCccCCcccccCCcHHHHHhcCCCHHHHHHHHhcC-CC---CCCCchHHHHHHHcCCHHHHHH
Q 009554 240 AEEIRMLRLKSFPDDENTAVEVDPLREKRIKRIHKALDSDDVELVRLLLSES-EI---TLDEANALHYAAAYCDPKVLSE 315 (532)
Q Consensus 240 ~~~i~~lL~~~~~~~~~~~~~in~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~i---n~~g~t~Lh~A~~~g~~~~v~~ 315 (532)
.+++++|.. .++ +++. +..|.||||+|+..|+.+++++|++.| ++ |..|.||||+|+..|+.+++++
T Consensus 82 -~~~v~~Ll~--~g~-----~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 152 (261)
T 2xai_A 82 -WDCVNLLLQ--HGA-----SVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKK 152 (261)
T ss_dssp -HHHHHHHHH--TTC-----CSSC-SCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHH
T ss_pred -HHHHHHHHH--CCC-----CCCC-CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHH
Confidence 667777743 333 3554 456999999999999999999999999 54 5789999999999999999999
Q ss_pred HHHcCCCCCcCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCCcccHHHHHhcCCcccchhh
Q 009554 316 VLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDLTLDGRSAVSICRRLTRPKDYQAKTEQGKETNKDRI 395 (532)
Q Consensus 316 LL~~~~advn~~d~~G~TpLh~Aa~~~~~~iv~~LL~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~~G~~~~~~~~ 395 (532)
|++.+ +++|. |..|+||||+|+..|+.+++++|+++|+|++.+|.+|+||||+|+. +...++.+.+.+..+.-...
T Consensus 153 Ll~~g-~~~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~--~~~~~~~ll~~~~~~~l~~~ 228 (261)
T 2xai_A 153 LLESG-ADVNQ-GKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPP--ESPLAQLFLEREGPPSLMQL 228 (261)
T ss_dssp HHHHT-CCTTC-CBTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCT--TCTHHHHHHHC-CCCCHHHH
T ss_pred HHHcC-CCCCC-CCCCCChHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCChhhhccc--cccHHHHHHhccCCccHHHH
Confidence 99997 99995 8999999999999999999999999999999999999999999995 45678888887776655455
Q ss_pred hHHHHHHhhhcCCCC
Q 009554 396 CIDVLEGEMRRNPMA 410 (532)
Q Consensus 396 ~~~~L~~~~~~~p~~ 410 (532)
|---+......+|+.
T Consensus 229 ~~~~~r~~~g~t~l~ 243 (261)
T 2xai_A 229 CRLRIRKCFGIQQHH 243 (261)
T ss_dssp HHHHHHTTSCTTCGG
T ss_pred HHHHHHHHhchhccc
Confidence 444444444445544
No 3
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.98 E-value=9.5e-32 Score=264.05 Aligned_cols=219 Identities=20% Similarity=0.168 Sum_probs=196.9
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHcCCCcccccCCCCcHHHHHHHHHhCcHH----HHHcccccccccccCcchhhhcCCcc
Q 009554 163 AVEMMYASSIFELPELVSLFQRRLLNFVGKAVAEDIIPILLAAFHCQLSQ----LLAQCVDRIVRSDLDTISIEKELPTE 238 (532)
Q Consensus 163 ~~~~L~~A~~~~~~~lv~~ll~~~~~i~~~~~~~n~~t~L~~A~~~~~~~----Ll~~~~~~~~~~~~~~t~L~~a~~~~ 238 (532)
..++||+|+..+..+++++|++++++++.++.. +.||||+|+..++.+ |+++|++++.++..|.|+||.|+..+
T Consensus 39 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 116 (285)
T 1wdy_A 39 GWTPLHNAVQMSREDIVELLLRHGADPVLRKKN--GATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYG 116 (285)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--CCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTT
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhC
Confidence 378999999999999999999999999987544 499999999999844 88999999999999999999999998
Q ss_pred hHHHHHHHHhhcCCCCCCCCccCCcc----------cccCCcHHHHHhcCCCHHHHHHHHhc-C-C---CCCCCchHHHH
Q 009554 239 VAEEIRMLRLKSFPDDENTAVEVDPL----------REKRIKRIHKALDSDDVELVRLLLSE-S-E---ITLDEANALHY 303 (532)
Q Consensus 239 ~~~~i~~lL~~~~~~~~~~~~~in~~----------d~~g~t~Lh~A~~~g~~~~v~~Ll~~-g-~---in~~g~t~Lh~ 303 (532)
. .+++++|... ++ +++.. +..|.||||+|+..|+.+++++|++. | + .|..|+||||+
T Consensus 117 ~-~~~~~~Ll~~--g~-----~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~ 188 (285)
T 1wdy_A 117 K-VKALKFLYKR--GA-----NVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIH 188 (285)
T ss_dssp C-HHHHHHHHHT--TC-----CTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHH
T ss_pred C-HHHHHHHHHh--CC-----CcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHH
Confidence 8 6677766433 32 35554 77899999999999999999999997 6 4 45889999999
Q ss_pred HHHcCC----HHHHHHHHHcCCCCCcCCCCCCChHHHHHHHcCCHHHHHHHHh-CCCCCCccCCCCCcHHHHHHHcCCcc
Q 009554 304 AAAYCD----PKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLT-KGACASDLTLDGRSAVSICRRLTRPK 378 (532)
Q Consensus 304 A~~~g~----~~~v~~LL~~~~advn~~d~~G~TpLh~Aa~~~~~~iv~~LL~-~gad~~~~d~~G~TpL~~A~~~~~~~ 378 (532)
|+..++ .++++.|+..+ +++|.+|..|+||||+|+.+|+.+++++|++ +|++++.+|..|+||||+|++.++..
T Consensus 189 a~~~~~~~~~~~i~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~ 267 (285)
T 1wdy_A 189 ALLSSDDSDVEAITHLLLDHG-ADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKK 267 (285)
T ss_dssp HHHCSCTTTHHHHHHHHHHTT-CCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHccccchHHHHHHHHHHcC-CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHH
Confidence 999999 88999999887 9999999999999999999999999999999 89999999999999999999999999
Q ss_pred cHHHHHhcCCcccc
Q 009554 379 DYQAKTEQGKETNK 392 (532)
Q Consensus 379 ~~~~~~~~G~~~~~ 392 (532)
.++.+.+.|+++..
T Consensus 268 i~~~Ll~~Ga~~~~ 281 (285)
T 1wdy_A 268 IAELLCKRGASTDC 281 (285)
T ss_dssp HHHHHHHHSSCSCC
T ss_pred HHHHHHHcCCCCCc
Confidence 99999999988754
No 4
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.98 E-value=8.4e-32 Score=258.23 Aligned_cols=205 Identities=16% Similarity=0.121 Sum_probs=185.9
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHcCCCcccccCCCCcHHHHHHHHHhCcHH----HHHcccccccccccCcchhhhcCCcc
Q 009554 163 AVEMMYASSIFELPELVSLFQRRLLNFVGKAVAEDIIPILLAAFHCQLSQ----LLAQCVDRIVRSDLDTISIEKELPTE 238 (532)
Q Consensus 163 ~~~~L~~A~~~~~~~lv~~ll~~~~~i~~~~~~~n~~t~L~~A~~~~~~~----Ll~~~~~~~~~~~~~~t~L~~a~~~~ 238 (532)
..++||.|+..|..+++++|++++.+++..+.. +.||||+|+..+..+ |+++|++++.++..|.|+||.|+..+
T Consensus 11 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 88 (237)
T 3b7b_A 11 KRSPLHAAAEAGHVDICHMLVQAGANIDTCSED--QRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKG 88 (237)
T ss_dssp SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT--CCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTT
T ss_pred CCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCC--CCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcC
Confidence 478999999999999999999999999987544 499999999999844 88899999999999999999999999
Q ss_pred hHHHHHHHHhhcCCCCCCCCccCCcccccCCcHHHHHhcCCCHHHHHHHHhcC-CC---CCCCchHHHHHHHcCCHHHHH
Q 009554 239 VAEEIRMLRLKSFPDDENTAVEVDPLREKRIKRIHKALDSDDVELVRLLLSES-EI---TLDEANALHYAAAYCDPKVLS 314 (532)
Q Consensus 239 ~~~~i~~lL~~~~~~~~~~~~~in~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~i---n~~g~t~Lh~A~~~g~~~~v~ 314 (532)
. .+++++|... . +.+++..+..|+||||+|+..|+.+++++|++.| ++ |..|.||||+|+..|+.++++
T Consensus 89 ~-~~~~~~Ll~~-~-----~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~ 161 (237)
T 3b7b_A 89 H-YEVVQYLLSN-G-----QMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAE 161 (237)
T ss_dssp C-HHHHHHHHTT-T-----CCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHH
T ss_pred C-HHHHHHHHhC-C-----CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHH
Confidence 8 6777777433 1 1358888999999999999999999999999999 44 578999999999999999999
Q ss_pred HHHHcCCCCCcCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCCc
Q 009554 315 EVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDLTLDGRSAVSICRRLTRP 377 (532)
Q Consensus 315 ~LL~~~~advn~~d~~G~TpLh~Aa~~~~~~iv~~LL~~gad~~~~d~~G~TpL~~A~~~~~~ 377 (532)
+|+..+ ++++.+|..|+||||+|+.+|+.+++++|+++|++++.+|.+|+||||+|+..++.
T Consensus 162 ~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~ 223 (237)
T 3b7b_A 162 ILLAAK-CDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQV 223 (237)
T ss_dssp HHHTTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHH
T ss_pred HHHHcC-CCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHH
Confidence 999987 99999999999999999999999999999999999999999999999999987654
No 5
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.98 E-value=1.7e-32 Score=282.28 Aligned_cols=221 Identities=12% Similarity=0.129 Sum_probs=195.3
Q ss_pred hHHHHHHHHHhhCcHHHHHHHH--------HcCCCcccccCCCCcHHHHHHHHHhCcHH----HHHcccccccccccCcc
Q 009554 162 FAVEMMYASSIFELPELVSLFQ--------RRLLNFVGKAVAEDIIPILLAAFHCQLSQ----LLAQCVDRIVRSDLDTI 229 (532)
Q Consensus 162 ~~~~~L~~A~~~~~~~lv~~ll--------~~~~~i~~~~~~~n~~t~L~~A~~~~~~~----Ll~~~~~~~~~~~~~~t 229 (532)
...++||+|+..|..+++++++ +.|++++.+|..+ .||||+|+..|+.+ |+++|++++.++..|.|
T Consensus 124 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g--~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t 201 (373)
T 2fo1_E 124 HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDE--NTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERS 201 (373)
T ss_dssp SCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTS--CCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCC
T ss_pred CCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCC--CCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCC
Confidence 4589999999999887666654 8899999985554 99999999999844 89999999999999999
Q ss_pred hhhhcCCcchHHHHHHHHhhcCCCCCCCCccCCcccccCCcHHHHHhcCC---CHHHHHHHHhcC-CCC-----------
Q 009554 230 SIEKELPTEVAEEIRMLRLKSFPDDENTAVEVDPLREKRIKRIHKALDSD---DVELVRLLLSES-EIT----------- 294 (532)
Q Consensus 230 ~L~~a~~~~~~~~i~~lL~~~~~~~~~~~~~in~~d~~g~t~Lh~A~~~g---~~~~v~~Ll~~g-~in----------- 294 (532)
+||.|+..+. .+++++|... +. ...+++..|..|+||||+|+..| +.+++++|++.| +++
T Consensus 202 ~L~~A~~~g~-~~~v~~Ll~~--~~--~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d 276 (373)
T 2fo1_E 202 ALHQAAANRD-FGMMVYMLNS--TK--LKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEK 276 (373)
T ss_dssp HHHHHHHTTC-HHHHHHHTTS--HH--HHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSS
T ss_pred HHHHHHHCCC-HHHHHHHHhc--Cc--cccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCccc
Confidence 9999999998 6777777321 10 01358889999999999999998 899999999999 554
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCCcHHHHHHHc
Q 009554 295 LDEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDLTLDGRSAVSICRRL 374 (532)
Q Consensus 295 ~~g~t~Lh~A~~~g~~~~v~~LL~~~~advn~~d~~G~TpLh~Aa~~~~~~iv~~LL~~gad~~~~d~~G~TpL~~A~~~ 374 (532)
..|+||||+|+..|+.+++++||..+|+++|.+|..|+||||+|+.+|+.++|++|+++|++++.+|..|+||||+|+..
T Consensus 277 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~ 356 (373)
T 2fo1_E 277 YKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQAN 356 (373)
T ss_dssp CCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHT
T ss_pred ccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHc
Confidence 48999999999999999999999998899999999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHHHHhcCCc
Q 009554 375 TRPKDYQAKTEQGKE 389 (532)
Q Consensus 375 ~~~~~~~~~~~~G~~ 389 (532)
|+..+++.+.+.|..
T Consensus 357 g~~~iv~~Ll~~~a~ 371 (373)
T 2fo1_E 357 NHHNIVDIFDRCRPE 371 (373)
T ss_dssp TCHHHHHHHHTTC--
T ss_pred CCHHHHHHHHhcCcc
Confidence 999999999987753
No 6
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.98 E-value=1e-31 Score=264.00 Aligned_cols=209 Identities=18% Similarity=0.109 Sum_probs=170.6
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHcCCC---cccccCCCCcHHHHHHHHHhCcHH----HHHcccccccccccCcchhhhcC
Q 009554 163 AVEMMYASSIFELPELVSLFQRRLLN---FVGKAVAEDIIPILLAAFHCQLSQ----LLAQCVDRIVRSDLDTISIEKEL 235 (532)
Q Consensus 163 ~~~~L~~A~~~~~~~lv~~ll~~~~~---i~~~~~~~n~~t~L~~A~~~~~~~----Ll~~~~~~~~~~~~~~t~L~~a~ 235 (532)
..++||+|+..|..+++++|++++.+ ++.++. .|.||||+|+..|+.+ |+++|++++.++..|.||||.|+
T Consensus 9 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~ 86 (282)
T 1oy3_D 9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQND--LGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLAC 86 (282)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCT--TSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHT
T ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCC--CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence 47899999999999999999999988 666644 4599999999999844 88999999999999999999999
Q ss_pred CcchHHHHHHHHhhcCCCCC----------------------------------------CCCccCCcccccCCcHHHHH
Q 009554 236 PTEVAEEIRMLRLKSFPDDE----------------------------------------NTAVEVDPLREKRIKRIHKA 275 (532)
Q Consensus 236 ~~~~~~~i~~lL~~~~~~~~----------------------------------------~~~~~in~~d~~g~t~Lh~A 275 (532)
..+. .+++++|...+.... ....+++..+..|.||||+|
T Consensus 87 ~~~~-~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A 165 (282)
T 1oy3_D 87 RVRA-HTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVA 165 (282)
T ss_dssp TTTC-HHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHH
T ss_pred HcCC-cchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHH
Confidence 9998 677777743211100 00234778899999999999
Q ss_pred hcCCCHHHHHHHHhcC-CCC----CCCchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCChHHHHHHHcCCHHHHHHH
Q 009554 276 LDSDDVELVRLLLSES-EIT----LDEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSL 350 (532)
Q Consensus 276 ~~~g~~~~v~~Ll~~g-~in----~~g~t~Lh~A~~~g~~~~v~~LL~~~~advn~~d~~G~TpLh~Aa~~~~~~iv~~L 350 (532)
+..|+.+++++|++.| +++ ..|+||||+|+..|+.+++++||..| ++++.+|..|+||||+|+.+|+.+++++|
T Consensus 166 ~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~tpL~~A~~~~~~~~v~~L 244 (282)
T 1oy3_D 166 VIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG-ADPTARMYGGRTPLGSALLRPNPILARLL 244 (282)
T ss_dssp HHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHTSSCHHHHHHH
T ss_pred HHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcC-CCCcccccCCCCHHHHHHHcCCcHHHHHH
Confidence 9999999999999999 554 34999999999999999999999996 99999999999999999999999999999
Q ss_pred HhCCCCCCccCCCCCcHHHHHHHcC
Q 009554 351 LTKGACASDLTLDGRSAVSICRRLT 375 (532)
Q Consensus 351 L~~gad~~~~d~~G~TpL~~A~~~~ 375 (532)
+++||+++.+|..|.|||++|....
T Consensus 245 l~~ga~~~~~~~~g~tpl~~a~~~~ 269 (282)
T 1oy3_D 245 RAHGAPEPEDGGDKLSPCSSSGSDS 269 (282)
T ss_dssp HHTTCCCCCCC--------------
T ss_pred HHcCCCcCcCCCcccccccccCCcc
Confidence 9999999999999999999998753
No 7
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.98 E-value=1.9e-32 Score=263.13 Aligned_cols=219 Identities=15% Similarity=0.082 Sum_probs=188.8
Q ss_pred hHHHHHHHHHhhCcHHHHHHHHH----cCCCcccccCCCCcHHHHHHHHHhCcHH----HHHcccccccccccCcchhhh
Q 009554 162 FAVEMMYASSIFELPELVSLFQR----RLLNFVGKAVAEDIIPILLAAFHCQLSQ----LLAQCVDRIVRSDLDTISIEK 233 (532)
Q Consensus 162 ~~~~~L~~A~~~~~~~lv~~ll~----~~~~i~~~~~~~n~~t~L~~A~~~~~~~----Ll~~~~~~~~~~~~~~t~L~~ 233 (532)
...++||.|+..|..++++++++ .+.+++.++..+ .||||+|+..++.+ |++.|++++.++..|.||||.
T Consensus 8 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g--~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~ 85 (241)
T 1k1a_A 8 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLR--QTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHL 85 (241)
T ss_dssp TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTS--CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccC--CCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHH
Confidence 34889999999999999999886 788888875444 99999999999844 889999999999999999999
Q ss_pred cCCcchHHHHHHHHhhcCCCCCCCCccCCcccccCCcHHHHHhcCCCHHHHHHHHhcC-CCC----CCCchHHHHHHHcC
Q 009554 234 ELPTEVAEEIRMLRLKSFPDDENTAVEVDPLREKRIKRIHKALDSDDVELVRLLLSES-EIT----LDEANALHYAAAYC 308 (532)
Q Consensus 234 a~~~~~~~~i~~lL~~~~~~~~~~~~~in~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~in----~~g~t~Lh~A~~~g 308 (532)
|+..+. .+++++|...... ...+++..|..|+||||+|+..|+.+++++|++.| +++ ..|.||||+|+..|
T Consensus 86 A~~~~~-~~~~~~Ll~~~~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~ 161 (241)
T 1k1a_A 86 ACEHRS-PTCLRALLDSAAP---GTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENN 161 (241)
T ss_dssp HHHTTC-HHHHHHHHHHSCT---TSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred HHHcCC-HHHHHHHHHcCCC---ccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcC
Confidence 999988 5666666444221 12358888999999999999999999999999999 543 67999999999999
Q ss_pred CHHHHHHHHHcCCCCCcCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCCcccHHHHHhcC
Q 009554 309 DPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDLTLDGRSAVSICRRLTRPKDYQAKTEQG 387 (532)
Q Consensus 309 ~~~~v~~LL~~~~advn~~d~~G~TpLh~Aa~~~~~~iv~~LL~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~~G 387 (532)
+.+++++|++.+ +++|.+|..|+||||+|+.+|+.+++++|+++|++++.+|..|+||||+|+..|+.+.++.+...+
T Consensus 162 ~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~ 239 (241)
T 1k1a_A 162 SLSMVQLLLQHG-ANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRP 239 (241)
T ss_dssp CHHHHHHHHHTT-CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC-----
T ss_pred CHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhccCC
Confidence 999999999987 999999999999999999999999999999999999999999999999999887777666655443
No 8
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.98 E-value=8.9e-32 Score=282.29 Aligned_cols=314 Identities=17% Similarity=0.158 Sum_probs=211.7
Q ss_pred HHHHHHHHhhCcHHHHHHHHHcCCCcccccCCCCcHHHHHHHHHhCcHH----HHHcccccccccccCcchhhhcCCcch
Q 009554 164 VEMMYASSIFELPELVSLFQRRLLNFVGKAVAEDIIPILLAAFHCQLSQ----LLAQCVDRIVRSDLDTISIEKELPTEV 239 (532)
Q Consensus 164 ~~~L~~A~~~~~~~lv~~ll~~~~~i~~~~~~~n~~t~L~~A~~~~~~~----Ll~~~~~~~~~~~~~~t~L~~a~~~~~ 239 (532)
.++||+|+..|..+++++|++++.+++.++..+ .||||+|+..|+.+ |+++|++++..+..|.||||.|+..+.
T Consensus 48 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g--~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~ 125 (437)
T 1n11_A 48 ETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDD--QTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGH 125 (437)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTS--CCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred CCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC--CCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCC
Confidence 678888888888888888888888888775444 78888888888743 777888888888888888888888887
Q ss_pred HHHHHHHHhhcCCCCCCCCccCCcccccCCcHHHHHhcCCCHHHHHHHHhcC-CC---CCCCchHHHHHHHcCCHHHHHH
Q 009554 240 AEEIRMLRLKSFPDDENTAVEVDPLREKRIKRIHKALDSDDVELVRLLLSES-EI---TLDEANALHYAAAYCDPKVLSE 315 (532)
Q Consensus 240 ~~~i~~lL~~~~~~~~~~~~~in~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~i---n~~g~t~Lh~A~~~g~~~~v~~ 315 (532)
.+++++|... + .+++..+..|.||||+|+..|+.+++++|++.| ++ +..|.||||+|+..|+.+++++
T Consensus 126 -~~~v~~Ll~~--~-----~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 197 (437)
T 1n11_A 126 -VETVLALLEK--E-----ASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKL 197 (437)
T ss_dssp -HHHHHHHHHT--T-----CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHH
T ss_pred -HHHHHHHHhC--C-----CCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 4444444222 2 236667778888888888888888888888888 33 4678888888888888888888
Q ss_pred HHHcCCCCCcCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCCcccHHHHHhcCCcccc---
Q 009554 316 VLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDLTLDGRSAVSICRRLTRPKDYQAKTEQGKETNK--- 392 (532)
Q Consensus 316 LL~~~~advn~~d~~G~TpLh~Aa~~~~~~iv~~LL~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~~G~~~~~--- 392 (532)
|+..+ ++++.++..|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+...++.+.+.|...+.
T Consensus 198 Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 276 (437)
T 1n11_A 198 LLPRG-GSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNK 276 (437)
T ss_dssp HGGGT-CCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCT
T ss_pred HHhCC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCC
Confidence 88876 78888888888888888888888888888888888888888888888888888888888888776654321
Q ss_pred -------------hhhhHHHHHHhh-hcCCCCCcccccccccchHHHHHHhhhhhHHHHHHhhCchhHH---------HH
Q 009554 393 -------------DRICIDVLEGEM-RRNPMAGDAFITSHTLSDDLHMKLLYLENRVAFARLLFPTEAK---------LA 449 (532)
Q Consensus 393 -------------~~~~~~~L~~~~-~~~p~~~~~~~~~~~~~~~l~~~ll~le~r~~~ar~l~~~ea~---------~~ 449 (532)
+..++++|.+.. ..+...... ...++.. -..++.+++++|+..++. .+
T Consensus 277 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g-------~t~L~~A--~~~g~~~~v~~Ll~~gad~n~~~~~g~t~ 347 (437)
T 1n11_A 277 SGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMG-------YTPLHVA--SHYGNIKLVKFLLQHQADVNAKTKLGYSP 347 (437)
T ss_dssp TCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSC-------CCHHHHH--HHSSCSHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCC-------CCHHHHH--HHcCcHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 112233332211 001111111 1112111 112455667777665543 46
Q ss_pred HhhhcccccccccccccCCCCCCCcccccCcCchhhhhhh--hHHHHHHHH
Q 009554 450 MDIANTETTSEFSGFCASKGSSGNLREVDLNETPVMRNKR--LRPRMEALM 498 (532)
Q Consensus 450 ~~ia~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~ 498 (532)
+++|...|..+..-+....+...+... .-+.||+..-.+ +.+.++.|.
T Consensus 348 L~~A~~~g~~~iv~~Ll~~ga~~~~~~-~~g~t~l~~A~~~g~~~~~~~l~ 397 (437)
T 1n11_A 348 LHQAAQQGHTDIVTLLLKNGASPNEVS-SDGTTPLAIAKRLGYISVTDVLK 397 (437)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCSCCCC-SSSCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHCChHHHHHHHHHCcCCCCCCC-CCCCCHHHHHHHcCcHHHHHHHH
Confidence 777777777777666654332222111 235677764332 444444443
No 9
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.98 E-value=1.4e-32 Score=269.99 Aligned_cols=202 Identities=19% Similarity=0.195 Sum_probs=161.7
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHcCCCc--------ccccCCCCcHHHHHHHHHhCc-----HHHHHcccccccccccCcc
Q 009554 163 AVEMMYASSIFELPELVSLFQRRLLNF--------VGKAVAEDIIPILLAAFHCQL-----SQLLAQCVDRIVRSDLDTI 229 (532)
Q Consensus 163 ~~~~L~~A~~~~~~~lv~~ll~~~~~i--------~~~~~~~n~~t~L~~A~~~~~-----~~Ll~~~~~~~~~~~~~~t 229 (532)
..++|+.|+..|..+++++|++.+.+. +.. ...+.+||+.|+.++. ..|++.|++++.++..|.|
T Consensus 11 ~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~--~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~T 88 (269)
T 4b93_B 11 EVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAA--DPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSS 88 (269)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTCC------------------------------------------CCCCTTCCCTTSCC
T ss_pred chhHHHHHHHcCCHHHHHHHHHCCCccccccccccccc--CccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCC
Confidence 378999999999999999999988753 222 3345899999998775 3388999999999999999
Q ss_pred hhhhcCCcchHHHHHHHHhhcCCCCCCCCccCCcccccCCcHHHHHhcCCCHHHHHHHHhcC-CC---CCCCchHHHHHH
Q 009554 230 SIEKELPTEVAEEIRMLRLKSFPDDENTAVEVDPLREKRIKRIHKALDSDDVELVRLLLSES-EI---TLDEANALHYAA 305 (532)
Q Consensus 230 ~L~~a~~~~~~~~i~~lL~~~~~~~~~~~~~in~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~i---n~~g~t~Lh~A~ 305 (532)
|||+|+..+. .+++++|+. .+ ++++..+..|.||+|+|+..++.+++++|++.| ++ |..|+||||+|+
T Consensus 89 pLh~A~~~g~-~~~v~~Ll~--~~-----a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~ 160 (269)
T 4b93_B 89 PLHVAALHGR-ADLIPLLLK--HG-----ANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYAC 160 (269)
T ss_dssp HHHHHHHTTC-TTHHHHHHH--TT-----CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHH
T ss_pred HHHHHHHcCc-HHHHHHHHh--cC-----CCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence 9999999988 677777742 23 358889999999999999999999999999999 54 588999999999
Q ss_pred HcCCHHHHHHHHHcCCCCCcCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcC
Q 009554 306 AYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDLTLDGRSAVSICRRLT 375 (532)
Q Consensus 306 ~~g~~~~v~~LL~~~~advn~~d~~G~TpLh~Aa~~~~~~iv~~LL~~gad~~~~d~~G~TpL~~A~~~~ 375 (532)
..|+.+++++||+.| +|+|.+|..|+||||+|+.+|+.++|++||++|||++.+|.+|+||||+|++++
T Consensus 161 ~~g~~~~v~~Ll~~g-advn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~ 229 (269)
T 4b93_B 161 SGGHHELVALLLQHG-ASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNS 229 (269)
T ss_dssp HTTCGGGHHHHHHTT-CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTC
T ss_pred HCCCHHHHHHHHHCC-CCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCC
Confidence 999999999999987 999999999999999999999999999999999999999999999999998754
No 10
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.97 E-value=6.1e-31 Score=258.26 Aligned_cols=220 Identities=18% Similarity=0.096 Sum_probs=197.2
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHcCCCcccccCCCCcHHHHHHHHHhCcHH----HHHcccccccccccCcchhhhcCCcc
Q 009554 163 AVEMMYASSIFELPELVSLFQRRLLNFVGKAVAEDIIPILLAAFHCQLSQ----LLAQCVDRIVRSDLDTISIEKELPTE 238 (532)
Q Consensus 163 ~~~~L~~A~~~~~~~lv~~ll~~~~~i~~~~~~~n~~t~L~~A~~~~~~~----Ll~~~~~~~~~~~~~~t~L~~a~~~~ 238 (532)
..++|+.|+..|..++++++++.+.+++..+ ...+.||||+|+..+..+ |+++|++++.++..|.||||.|+..+
T Consensus 5 g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 83 (285)
T 1wdy_A 5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQE-EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG 83 (285)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred cchHHHHHHHcCCHHHHHHHHHcCCCccccc-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcC
Confidence 4789999999999999999999999988752 233489999999999844 88999999999999999999999999
Q ss_pred hHHHHHHHHhhcCCCCCCCCccCCcccccCCcHHHHHhcCCCHHHHHHHHhcC-CC-------------CCCCchHHHHH
Q 009554 239 VAEEIRMLRLKSFPDDENTAVEVDPLREKRIKRIHKALDSDDVELVRLLLSES-EI-------------TLDEANALHYA 304 (532)
Q Consensus 239 ~~~~i~~lL~~~~~~~~~~~~~in~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~i-------------n~~g~t~Lh~A 304 (532)
. .+++++|.. .| .+++..|..|+||||+|+..|+.+++++|++.| ++ +..|.||||+|
T Consensus 84 ~-~~~v~~Ll~--~g-----~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A 155 (285)
T 1wdy_A 84 S-VKLLKLFLS--KG-----ADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDA 155 (285)
T ss_dssp C-HHHHHHHHH--TT-----CCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHH
T ss_pred C-HHHHHHHHH--cC-----CCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHH
Confidence 8 667777743 23 358889999999999999999999999999999 43 56689999999
Q ss_pred HHcCCHHHHHHHHHcCCCCCcCCCCCCChHHHHHHHcCC----HHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCCcccH
Q 009554 305 AAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKE----PSVIVSLLTKGACASDLTLDGRSAVSICRRLTRPKDY 380 (532)
Q Consensus 305 ~~~g~~~~v~~LL~~~~advn~~d~~G~TpLh~Aa~~~~----~~iv~~LL~~gad~~~~d~~G~TpL~~A~~~~~~~~~ 380 (532)
+..|+.+++++|+...|++++.+|..|+||||+|+..++ .+++++|+++|++++.+|..|+||||+|++.|+...+
T Consensus 156 ~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v 235 (285)
T 1wdy_A 156 AEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLV 235 (285)
T ss_dssp HHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHH
T ss_pred HHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHH
Confidence 999999999999998669999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHh-cCCccc
Q 009554 381 QAKTE-QGKETN 391 (532)
Q Consensus 381 ~~~~~-~G~~~~ 391 (532)
+.+.+ .|..++
T Consensus 236 ~~Ll~~~g~~~~ 247 (285)
T 1wdy_A 236 QRLLEQEHIEIN 247 (285)
T ss_dssp HHHHHSSSCCTT
T ss_pred HHHHhccCCCcc
Confidence 99988 666543
No 11
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.97 E-value=1.9e-31 Score=272.97 Aligned_cols=224 Identities=8% Similarity=0.011 Sum_probs=193.1
Q ss_pred hhHHHHHHHHHhhCcHHHHHHHHHcCCCcccccCCCCcHHHHHHHHHhCcHH----HHHcccccccccccCcchhhhcCC
Q 009554 161 NFAVEMMYASSIFELPELVSLFQRRLLNFVGKAVAEDIIPILLAAFHCQLSQ----LLAQCVDRIVRSDLDTISIEKELP 236 (532)
Q Consensus 161 ~~~~~~L~~A~~~~~~~lv~~ll~~~~~i~~~~~~~n~~t~L~~A~~~~~~~----Ll~~~~~~~~~~~~~~t~L~~a~~ 236 (532)
....++||+|+..|..+++++|++++++++.+|..+ .||||+|+..|+.+ |++++++++. ..|.|+||.|+.
T Consensus 18 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g--~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L~~A~~ 93 (364)
T 3ljn_A 18 DENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFG--CTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPIHLAVM 93 (364)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTC--CCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHHHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCC--CcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHHHHHHH
Confidence 445999999999999999999999999999985555 99999999999854 7888885544 478999999999
Q ss_pred cchHHHHHHHHhhcCC--CCCCC------------CccCCcccccCCcHHHHHhcCC--CHHHHHHHHhcC-CC---CCC
Q 009554 237 TEVAEEIRMLRLKSFP--DDENT------------AVEVDPLREKRIKRIHKALDSD--DVELVRLLLSES-EI---TLD 296 (532)
Q Consensus 237 ~~~~~~i~~lL~~~~~--~~~~~------------~~~in~~d~~g~t~Lh~A~~~g--~~~~v~~Ll~~g-~i---n~~ 296 (532)
.+. .+++++|+.... ++..+ ...++..|..|.||||+|+..| +.++|++|++.| ++ |..
T Consensus 94 ~g~-~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~ 172 (364)
T 3ljn_A 94 ANK-TDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKA 172 (364)
T ss_dssp TTC-HHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTT
T ss_pred cCC-HHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCC
Confidence 998 666666643200 11000 0112338889999999999999 999999999999 54 578
Q ss_pred CchHHHHHHHcCCHHHHHHHHHcCCCC-----CcCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCCcHHHHH
Q 009554 297 EANALHYAAAYCDPKVLSEVLSLGLAD-----VNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDLTLDGRSAVSIC 371 (532)
Q Consensus 297 g~t~Lh~A~~~g~~~~v~~LL~~~~ad-----vn~~d~~G~TpLh~Aa~~~~~~iv~~LL~~gad~~~~d~~G~TpL~~A 371 (532)
|+||||+|+..|+.+++++||..+ ++ +|.+|..|+||||+|+.+|+.++|++|+++|++++.+|..|+||||+|
T Consensus 173 g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A 251 (364)
T 3ljn_A 173 DETPLMRAMEFRNREALDLMMDTV-PSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLS 251 (364)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHHC-SCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHhcc-cccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence 999999999999999999999987 77 999999999999999999999999999999999999999999999999
Q ss_pred HHcCCcccHHHHHhcCCcc
Q 009554 372 RRLTRPKDYQAKTEQGKET 390 (532)
Q Consensus 372 ~~~~~~~~~~~~~~~G~~~ 390 (532)
++.|+...++.+.+.|...
T Consensus 252 ~~~g~~~~v~~Ll~~~~~~ 270 (364)
T 3ljn_A 252 VRAAMVLLTKELLQKTDVF 270 (364)
T ss_dssp HHTCCHHHHHHHHHHSCHH
T ss_pred HHhChHHHHHHHHHcCCch
Confidence 9999999999999988764
No 12
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.97 E-value=2.5e-31 Score=253.93 Aligned_cols=213 Identities=16% Similarity=0.096 Sum_probs=187.0
Q ss_pred HHHHHHHHhhCcHHHHHHHHHcCCC-cccccCCCCcHHHHHHHHHhCcHH----HHHcccccccccccCcchhhhcCCcc
Q 009554 164 VEMMYASSIFELPELVSLFQRRLLN-FVGKAVAEDIIPILLAAFHCQLSQ----LLAQCVDRIVRSDLDTISIEKELPTE 238 (532)
Q Consensus 164 ~~~L~~A~~~~~~~lv~~ll~~~~~-i~~~~~~~n~~t~L~~A~~~~~~~----Ll~~~~~~~~~~~~~~t~L~~a~~~~ 238 (532)
.++|+.|+..|..+.++.+++.+.. ++.+ ..++.||||+|+..++.+ |++.+++++.++..|.||||.|+..+
T Consensus 7 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 84 (231)
T 3aji_A 7 NIMICNLAYSGKLDELKERILADKSLATRT--DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAG 84 (231)
T ss_dssp SSHHHHHHHHTCHHHHHHHHHHCGGGGGCC--CTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHT
T ss_pred cchHHHHHHhCCHHHHHHHHHhchhhhhcC--CCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcC
Confidence 4689999999999999998877654 4444 344599999999999844 88999999999999999999999999
Q ss_pred hHHHHHHHHhhcCCCCCCCCccCCcccccCCcHHHHHhcCCCHHHHHHHHhcC-C---CCCCCchHHHHHHHcCCHHHHH
Q 009554 239 VAEEIRMLRLKSFPDDENTAVEVDPLREKRIKRIHKALDSDDVELVRLLLSES-E---ITLDEANALHYAAAYCDPKVLS 314 (532)
Q Consensus 239 ~~~~i~~lL~~~~~~~~~~~~~in~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~---in~~g~t~Lh~A~~~g~~~~v~ 314 (532)
. .+++++|.. .+ .+++.+|..|.||||+|+..|+.+++++|++.| + .|..|.||||+|+..|+.++++
T Consensus 85 ~-~~~v~~Ll~--~g-----~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~ 156 (231)
T 3aji_A 85 X-DEIVKALLV--KG-----AHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVH 156 (231)
T ss_dssp C-HHHHHHHHH--TT-----CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred H-HHHHHHHHH--cC-----CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHH
Confidence 8 667777743 23 358889999999999999999999999999999 4 4578999999999999999999
Q ss_pred HHHHcCCCCCcCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCCcccHHHHHhcC
Q 009554 315 EVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDLTLDGRSAVSICRRLTRPKDYQAKTEQG 387 (532)
Q Consensus 315 ~LL~~~~advn~~d~~G~TpLh~Aa~~~~~~iv~~LL~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~~G 387 (532)
+|+..+ ++++.+|..|+||||+|+.+|+.+++++|+++|++++.+|..|+||||+|+..++...++.+.+.|
T Consensus 157 ~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~ 228 (231)
T 3aji_A 157 ILLFYK-ASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEE 228 (231)
T ss_dssp HHHHTT-CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHhcC-CCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcccc
Confidence 999987 999999999999999999999999999999999999999999999999999877666666666554
No 13
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.97 E-value=2.9e-31 Score=268.73 Aligned_cols=254 Identities=18% Similarity=0.148 Sum_probs=190.8
Q ss_pred HHHHHhhhccCCcCCCCCccccccccccccCCCchhhh--hHHHHHHHHHhhCcHHHHHHHHHcCCCcccccCCCCcHHH
Q 009554 124 FLIFLSYTYSGKLKPFPMEVSTCVDNICVHDACRPAIN--FAVEMMYASSIFELPELVSLFQRRLLNFVGKAVAEDIIPI 201 (532)
Q Consensus 124 ~~~lL~ylYtg~l~~~~~~v~~cvd~~~~h~a~~~~~~--~~~~~L~~A~~~~~~~lv~~ll~~~~~i~~~~~~~n~~t~ 201 (532)
-..++.-+..|.+ ..|+.++.+|++++..+ ...+|||+|+..|..+++++|+++|++++.++..+ .++
T Consensus 26 ~t~L~~Av~~g~~--------~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~--~~~ 95 (337)
T 4g8k_A 26 NHLLIKAVQNEDV--------DLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNG--ATP 95 (337)
T ss_dssp HHHHHHHHHTTCH--------HHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC--CCH
T ss_pred ChHHHHHHHcCCH--------HHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCC--Cch
Confidence 3445555555544 23556667777766554 25789999999999999999999999988875444 788
Q ss_pred HHHHHHhCcHH----HHHcccccccccccCcchhhhcCCcchHHHHHHHHhhcCCCCCCC-----CccCCcccccCCcHH
Q 009554 202 LLAAFHCQLSQ----LLAQCVDRIVRSDLDTISIEKELPTEVAEEIRMLRLKSFPDDENT-----AVEVDPLREKRIKRI 272 (532)
Q Consensus 202 L~~A~~~~~~~----Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~i~~lL~~~~~~~~~~-----~~~in~~d~~g~t~L 272 (532)
++.+...+... ++..+.+++.++..|.||++.|+..+. .++++++... |++.+ ..+.+..+..|.|||
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~-~~~~~~ll~~--ga~~~~~~~~~~~~~~~~~~g~T~L 172 (337)
T 4g8k_A 96 FILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGK-VKALKFLYKR--GANVNLRRKTKEDQERLRKGGATAL 172 (337)
T ss_dssp HHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTC-HHHHHHHHHT--TCCTTCCCCCC-----CTTCSCCHH
T ss_pred hHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCc-HHHHHHHHHc--CCCcchhhccccccccccCCCCcHH
Confidence 88888877633 677788888888889999998888888 5555555333 32112 223455677889999
Q ss_pred HHHhcCCCHHHHHHHHhc-C-CC---CCCCchHHHHHHHcCC---H-HHHHHHHHcCCCCCcCCCCCCChHHHHHHHcCC
Q 009554 273 HKALDSDDVELVRLLLSE-S-EI---TLDEANALHYAAAYCD---P-KVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKE 343 (532)
Q Consensus 273 h~A~~~g~~~~v~~Ll~~-g-~i---n~~g~t~Lh~A~~~g~---~-~~v~~LL~~~~advn~~d~~G~TpLh~Aa~~~~ 343 (532)
|+|+..|+.++|++||++ | ++ |..|.|+||+++..++ . .+++.|++.| +|+|.+|..|+||||+|+..|+
T Consensus 173 ~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~g-ad~n~~d~~g~t~L~~a~~~~~ 251 (337)
T 4g8k_A 173 MDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHG-ADVNVRGERGKTPLILAVEKKH 251 (337)
T ss_dssp HHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTT-CCTTCCCGGGCCHHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHhhh
Confidence 999999999999999864 5 43 4778889888776543 3 3555666655 8999999999999999999999
Q ss_pred HHHHHHHHh-CCCCCCccCCCCCcHHHHHHHcCCcccHHHHHhcCCccc
Q 009554 344 PSVIVSLLT-KGACASDLTLDGRSAVSICRRLTRPKDYQAKTEQGKETN 391 (532)
Q Consensus 344 ~~iv~~LL~-~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~~G~~~~ 391 (532)
.++++.|++ .|+++|.+|.+|+||||+|++.|+...++.+.+.|++++
T Consensus 252 ~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n 300 (337)
T 4g8k_A 252 LGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD 300 (337)
T ss_dssp HHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSST
T ss_pred hHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence 999998887 488999999999999999999999999999998887754
No 14
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.97 E-value=5e-31 Score=276.57 Aligned_cols=217 Identities=17% Similarity=0.115 Sum_probs=149.5
Q ss_pred HHHHHHHHhhCcHHHHHHHHHcCCCcccccCCCCcHHHHHHHHHhCcHH----HHHcccccccccccCcchhhhcCCcch
Q 009554 164 VEMMYASSIFELPELVSLFQRRLLNFVGKAVAEDIIPILLAAFHCQLSQ----LLAQCVDRIVRSDLDTISIEKELPTEV 239 (532)
Q Consensus 164 ~~~L~~A~~~~~~~lv~~ll~~~~~i~~~~~~~n~~t~L~~A~~~~~~~----Ll~~~~~~~~~~~~~~t~L~~a~~~~~ 239 (532)
.++|+.|+..+..+++++|++++.+++..+..+ .||||+|+..++.+ |++++.+++..+..|.||||.|+..+.
T Consensus 147 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g--~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 224 (437)
T 1n11_A 147 FTPLHVAAKYGKVRVAELLLERDAHPNAAGKNG--LTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQ 224 (437)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSC--CCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTC
T ss_pred CCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC--CCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCC
Confidence 567777777777777777777777666653333 67777777776633 566666666666667777777766666
Q ss_pred HHHHHHHHhhcCCCCCCCCccCCcccccCCcHHHHHhcCCCHHHHHHHHhcC-C---CCCCCchHHHHHHHcCCHHHHHH
Q 009554 240 AEEIRMLRLKSFPDDENTAVEVDPLREKRIKRIHKALDSDDVELVRLLLSES-E---ITLDEANALHYAAAYCDPKVLSE 315 (532)
Q Consensus 240 ~~~i~~lL~~~~~~~~~~~~~in~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~---in~~g~t~Lh~A~~~g~~~~v~~ 315 (532)
.+++++|.. .+ .++|..+..|.||||+|+..|+.+++++|++.| + .|..|+||||+|+..|+.+++++
T Consensus 225 -~~~~~~Ll~--~g-----~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ 296 (437)
T 1n11_A 225 -VEVARSLLQ--YG-----GSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADV 296 (437)
T ss_dssp -HHHHHHHHH--TT-----CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred -HHHHHHHHH--cC-----CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 444444422 22 236666777777777777777777777777776 3 24667777777777777777777
Q ss_pred HHHcCCCCCcCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCCcccHHHHHhcCCccc
Q 009554 316 VLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDLTLDGRSAVSICRRLTRPKDYQAKTEQGKETN 391 (532)
Q Consensus 316 LL~~~~advn~~d~~G~TpLh~Aa~~~~~~iv~~LL~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~~G~~~~ 391 (532)
|+..+ +++|.+|..|+||||+|+.+|+.++|++|+++|+++|.+|..|+||||+|+..|+...++.+.+.|.+++
T Consensus 297 Ll~~g-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~ 371 (437)
T 1n11_A 297 LIKHG-VMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN 371 (437)
T ss_dssp HHHHT-CCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC
T ss_pred HHhCC-ccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCC
Confidence 77765 7777777777777777777777777777777777777777777777777777777777777777766554
No 15
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.97 E-value=3.9e-31 Score=251.13 Aligned_cols=208 Identities=15% Similarity=0.118 Sum_probs=173.2
Q ss_pred cHHHHHHHHHcCCCcccccCCCCcHHHHHHHHHhCcHH----HHHcccccccccccCcchhhhcCCcchHHHHHHHHhhc
Q 009554 175 LPELVSLFQRRLLNFVGKAVAEDIIPILLAAFHCQLSQ----LLAQCVDRIVRSDLDTISIEKELPTEVAEEIRMLRLKS 250 (532)
Q Consensus 175 ~~~lv~~ll~~~~~i~~~~~~~n~~t~L~~A~~~~~~~----Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~i~~lL~~~ 250 (532)
..+++++|++++.+++... ..++.||||+|+.+|..+ |+++|++++.++..|.||||.|+..+. .+++++|...
T Consensus 3 ~~~~i~~Ll~~g~~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll~~ 80 (223)
T 2f8y_A 3 APAVISDFIYQGASLHNQT-DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADA-QGVFQILIRN 80 (223)
T ss_dssp --CCEETTEETTCCTTCCC-TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC-HHHHHHHHHB
T ss_pred cHHHHHHHHHcCCCccccc-CCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC-HHHHHHHHHc
Confidence 4455666777777766531 233477888888777633 677777777777778888888877777 5666666433
Q ss_pred CCCCCCCCccCCcccccCCcHHHHHhcCCCHHHHHHHHhcC-CC---CCCCchHHHHHHHcCCHHHHHHHHHcCCCCCcC
Q 009554 251 FPDDENTAVEVDPLREKRIKRIHKALDSDDVELVRLLLSES-EI---TLDEANALHYAAAYCDPKVLSEVLSLGLADVNL 326 (532)
Q Consensus 251 ~~~~~~~~~~in~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~i---n~~g~t~Lh~A~~~g~~~~v~~LL~~~~advn~ 326 (532)
.. .+++..+..|.||||+|+..|+.+++++|++.| ++ |..|.||||+|+..|+.+++++|++.+ ++++.
T Consensus 81 ~~------~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~ 153 (223)
T 2f8y_A 81 RA------TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG-ANKDM 153 (223)
T ss_dssp TT------SCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTT-CCTTC
T ss_pred CC------CCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCC
Confidence 22 247888999999999999999999999999999 44 578999999999999999999999996 99999
Q ss_pred CCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCCcccHHHHHhcCCccc
Q 009554 327 RSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDLTLDGRSAVSICRRLTRPKDYQAKTEQGKETN 391 (532)
Q Consensus 327 ~d~~G~TpLh~Aa~~~~~~iv~~LL~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~~G~~~~ 391 (532)
+|..|+||||+|+.+|+.+++++|+++|++++.+|..|.||||+|++.++...++.+.+.|....
T Consensus 154 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~ 218 (223)
T 2f8y_A 154 QNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS 218 (223)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSC
T ss_pred cCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999887543
No 16
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.97 E-value=2.3e-30 Score=262.29 Aligned_cols=219 Identities=21% Similarity=0.176 Sum_probs=190.4
Q ss_pred hHHHHHHHHHhhCcHHHHHHHHH-cCCCcccccCCCCcHHHHHHHHHhCcHH----HHHcccccccccccCcchhhhcCC
Q 009554 162 FAVEMMYASSIFELPELVSLFQR-RLLNFVGKAVAEDIIPILLAAFHCQLSQ----LLAQCVDRIVRSDLDTISIEKELP 236 (532)
Q Consensus 162 ~~~~~L~~A~~~~~~~lv~~ll~-~~~~i~~~~~~~n~~t~L~~A~~~~~~~----Ll~~~~~~~~~~~~~~t~L~~a~~ 236 (532)
+..++|+.|+..|..+.++.++. .+.+++.+|.. |.||||+|+..|+.+ |+++|++++.++..|.||||.|+.
T Consensus 23 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~--g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 100 (351)
T 3utm_A 23 YKKDELLEAARSGNEEKLMALLTPLNVNCHASDGR--KSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACS 100 (351)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTT--CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred ccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHH
Confidence 44789999999999988777665 47888777544 489999999999844 889999999999999999999999
Q ss_pred cchHHHHHHHHhhcCCCCCCCCccCCcccccCCcHHHHHhcCCCHHHHHHHHhcC-CCC---------------------
Q 009554 237 TEVAEEIRMLRLKSFPDDENTAVEVDPLREKRIKRIHKALDSDDVELVRLLLSES-EIT--------------------- 294 (532)
Q Consensus 237 ~~~~~~i~~lL~~~~~~~~~~~~~in~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~in--------------------- 294 (532)
.+. .+++++|... + .+++..|..|+||||+|+..|+.+++++|+++| +++
T Consensus 101 ~g~-~~iv~~Ll~~--g-----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~ 172 (351)
T 3utm_A 101 YGH-YEVTELLLKH--G-----ACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRER 172 (351)
T ss_dssp TTC-HHHHHHHHHT--T-----CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHH
T ss_pred CCC-HHHHHHHHHC--C-----CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHH
Confidence 988 6777777422 3 358888999999999999999999999999988 422
Q ss_pred ------------------------------------CCCchHHHHHHHc---CCHHHHHHHHHcCCCCCcCCCCCCChHH
Q 009554 295 ------------------------------------LDEANALHYAAAY---CDPKVLSEVLSLGLADVNLRSSRGYTVL 335 (532)
Q Consensus 295 ------------------------------------~~g~t~Lh~A~~~---g~~~~v~~LL~~~~advn~~d~~G~TpL 335 (532)
..|.||||+|+.. +..++++.|+..+ +++|.+|..|+|||
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L 251 (351)
T 3utm_A 173 LTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKG-ANVNEKNKDFMTPL 251 (351)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTT-CCTTCCCTTCCCHH
T ss_pred HHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcC-CCcCCcCCCCCCHH
Confidence 4578999999999 4478888888887 99999999999999
Q ss_pred HHHHHcCCHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCCcccHHHHHhcCCccc
Q 009554 336 HIGAMRKEPSVIVSLLTKGACASDLTLDGRSAVSICRRLTRPKDYQAKTEQGKETN 391 (532)
Q Consensus 336 h~Aa~~~~~~iv~~LL~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~~G~~~~ 391 (532)
|+|+.+|+.+++++|+++|+++|.+|..|+||||+|+..|+...++.+.+.|.++.
T Consensus 252 ~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~ 307 (351)
T 3utm_A 252 HVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPS 307 (351)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred HHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999998764
No 17
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.97 E-value=7.7e-31 Score=259.69 Aligned_cols=209 Identities=17% Similarity=0.070 Sum_probs=184.8
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHcCCCcccccCCCCcHHHHHHHHHhCcHH----HHHcccccccccccCcchhhhcCCcc
Q 009554 163 AVEMMYASSIFELPELVSLFQRRLLNFVGKAVAEDIIPILLAAFHCQLSQ----LLAQCVDRIVRSDLDTISIEKELPTE 238 (532)
Q Consensus 163 ~~~~L~~A~~~~~~~lv~~ll~~~~~i~~~~~~~n~~t~L~~A~~~~~~~----Ll~~~~~~~~~~~~~~t~L~~a~~~~ 238 (532)
..++||.|+..|..+++++|++.+.+++.+|..+ .||||+|+..|+.+ |+++|++++.++..|.||||.|+..+
T Consensus 59 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g--~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~ 136 (285)
T 3d9h_A 59 DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADH--VSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSG 136 (285)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTC--CCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHT
T ss_pred CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC--CCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC
Confidence 4799999999999999999999999999885554 99999999999844 88999999999999999999999999
Q ss_pred hHHHHHHHHhhcCCCCCCCCccCCcccccCCcHHHHHhcCCCHHHHHHHHhcC-CC---CCCCchHHHHHHHcCCHHHHH
Q 009554 239 VAEEIRMLRLKSFPDDENTAVEVDPLREKRIKRIHKALDSDDVELVRLLLSES-EI---TLDEANALHYAAAYCDPKVLS 314 (532)
Q Consensus 239 ~~~~i~~lL~~~~~~~~~~~~~in~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~i---n~~g~t~Lh~A~~~g~~~~v~ 314 (532)
. .+++++|.. .++ +++. +..|.||||+|+..|+.+++++|++.| ++ |..|+||||+|+..|+.++++
T Consensus 137 ~-~~~v~~Ll~--~g~-----~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~ 207 (285)
T 3d9h_A 137 S-WDCVNLLLQ--HGA-----SVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVK 207 (285)
T ss_dssp C-HHHHHHHHH--TTC-----CSSC-SCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHH
T ss_pred H-HHHHHHHHH--CCC-----CCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHH
Confidence 8 667777743 232 3554 445999999999999999999999999 44 588999999999999999999
Q ss_pred HHHHcCCCCCcCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCCcccHHHHHhc
Q 009554 315 EVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDLTLDGRSAVSICRRLTRPKDYQAKTEQ 386 (532)
Q Consensus 315 ~LL~~~~advn~~d~~G~TpLh~Aa~~~~~~iv~~LL~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~~ 386 (532)
+|++.+ ++++. |..|+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+. +...++.+.+.
T Consensus 208 ~Ll~~g-a~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~--~~~~~~~Ll~~ 275 (285)
T 3d9h_A 208 KLLESG-ADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPP--ESPLAQLFLER 275 (285)
T ss_dssp HHHHTT-CCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCT--TSHHHHHHHHH
T ss_pred HHHHCC-CCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhcC--ccHHHHHHHHh
Confidence 999987 99995 9999999999999999999999999999999999999999999983 45666666654
No 18
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.97 E-value=9.1e-31 Score=249.30 Aligned_cols=202 Identities=16% Similarity=0.081 Sum_probs=178.6
Q ss_pred HHHHHHHHhhCcHHHHHHHHHcCCCccc-ccCCCCcHHHHHHHHHhCcHH----HHHcc--ccccc-ccccCcchhhhcC
Q 009554 164 VEMMYASSIFELPELVSLFQRRLLNFVG-KAVAEDIIPILLAAFHCQLSQ----LLAQC--VDRIV-RSDLDTISIEKEL 235 (532)
Q Consensus 164 ~~~L~~A~~~~~~~lv~~ll~~~~~i~~-~~~~~n~~t~L~~A~~~~~~~----Ll~~~--~~~~~-~~~~~~t~L~~a~ 235 (532)
.++||.|+..|..++++++++.+.+.+. + ..++.||||+|+..+..+ |++.+ .+++. .+..|.||||.|+
T Consensus 3 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~ 80 (228)
T 2dzn_A 3 NYPLHQACMENEFFKVQELLHSKPSLLLQK--DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC 80 (228)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHCGGGTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred ccHHHHHHHhCCHHHHHHHHhcCccccccC--CCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHH
Confidence 5799999999999999999999887654 4 344599999999999844 88888 66666 7789999999999
Q ss_pred CcchHHHHHHHHhhcCCCCCCCCccCCcccccCCcHHHHHhcCCCHHHHHHHHhcC-C---CCCCCchHHHHHHHcCCHH
Q 009554 236 PTEVAEEIRMLRLKSFPDDENTAVEVDPLREKRIKRIHKALDSDDVELVRLLLSES-E---ITLDEANALHYAAAYCDPK 311 (532)
Q Consensus 236 ~~~~~~~i~~lL~~~~~~~~~~~~~in~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~---in~~g~t~Lh~A~~~g~~~ 311 (532)
..+. .+++++|...+.+ .+++..+..|.||||+|+..|+.+++++|++.| + .|..|+||||+|+..|+.+
T Consensus 81 ~~~~-~~~~~~Ll~~g~~-----~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 154 (228)
T 2dzn_A 81 SVGN-LEVVKSLYDRPLK-----PDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLK 154 (228)
T ss_dssp HHCC-HHHHHHHHSSSSC-----CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH
T ss_pred HcCC-HHHHHHHHhCCCC-----cccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHH
Confidence 9998 6677776433211 358889999999999999999999999999999 4 4578999999999999999
Q ss_pred HHHHHHHcCCCCCcCCCCCCChHHHHHHHcCCHHHHHHHH-hCCCCCCccCCCCCcHHHHHHH
Q 009554 312 VLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLL-TKGACASDLTLDGRSAVSICRR 373 (532)
Q Consensus 312 ~v~~LL~~~~advn~~d~~G~TpLh~Aa~~~~~~iv~~LL-~~gad~~~~d~~G~TpL~~A~~ 373 (532)
++++|+..+.+++|.+|..|+||||+|+..|+.+++++|+ ++|++++.+|.+|+||||+|+.
T Consensus 155 ~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~ 217 (228)
T 2dzn_A 155 LIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN 217 (228)
T ss_dssp HHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSS
T ss_pred HHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHH
Confidence 9999999887999999999999999999999999999999 8999999999999999999965
No 19
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.97 E-value=2.9e-30 Score=261.34 Aligned_cols=214 Identities=18% Similarity=0.093 Sum_probs=186.3
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHcCCCcccccCCCCcHHHHHHHHHhCcHH----HHHcccccccccccCcchhhhcCCcc
Q 009554 163 AVEMMYASSIFELPELVSLFQRRLLNFVGKAVAEDIIPILLAAFHCQLSQ----LLAQCVDRIVRSDLDTISIEKELPTE 238 (532)
Q Consensus 163 ~~~~L~~A~~~~~~~lv~~ll~~~~~i~~~~~~~n~~t~L~~A~~~~~~~----Ll~~~~~~~~~~~~~~t~L~~a~~~~ 238 (532)
..++|+.|+..|..+++++|+++|++++.++. .+|.||||+|+..|+.+ |+++|++++.++..+.++++.+....
T Consensus 25 ~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~-~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~ 103 (337)
T 4g8k_A 25 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEE-EGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAG 103 (337)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCT-TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred CChHHHHHHHcCCHHHHHHHHHCCCCCCccCC-CCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcc
Confidence 47899999999999999999999999987642 23699999999999854 89999999999999999999888877
Q ss_pred hHHHHHHHHhhcCCCCCCCCccCCcccccCCcHHHHHhcCCCHHHHHHHHhcC-CCC-------------CCCchHHHHH
Q 009554 239 VAEEIRMLRLKSFPDDENTAVEVDPLREKRIKRIHKALDSDDVELVRLLLSES-EIT-------------LDEANALHYA 304 (532)
Q Consensus 239 ~~~~i~~lL~~~~~~~~~~~~~in~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~in-------------~~g~t~Lh~A 304 (532)
. ..+...+. . .+ .++|..|..|+||||+|+..|+.+++++|++.| +++ ..|.||||+|
T Consensus 104 ~-~~~~~~~~-~-~~-----~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A 175 (337)
T 4g8k_A 104 S-VKLLKLFL-S-KG-----ADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDA 175 (337)
T ss_dssp C-HHHHHHHH-T-TT-----CCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHH
T ss_pred c-chhhHHhh-h-cc-----chhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHH
Confidence 7 44444442 2 22 358999999999999999999999999999998 433 4689999999
Q ss_pred HHcCCHHHHHHHHHcCCCCCcCCCCCCChHHHHHHHcCC----HHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCCcccH
Q 009554 305 AAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKE----PSVIVSLLTKGACASDLTLDGRSAVSICRRLTRPKDY 380 (532)
Q Consensus 305 ~~~g~~~~v~~LL~~~~advn~~d~~G~TpLh~Aa~~~~----~~iv~~LL~~gad~~~~d~~G~TpL~~A~~~~~~~~~ 380 (532)
+..|+.++|++||.+.|+++|.+|..|+||||.++..+. ..++++|+++|+++|.+|.+|+||||+|+..|+...+
T Consensus 176 ~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v 255 (337)
T 4g8k_A 176 AEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLV 255 (337)
T ss_dssp HHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHH
T ss_pred HHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHH
Confidence 999999999999988779999999999999998887644 4688999999999999999999999999999977777
Q ss_pred HHHHh
Q 009554 381 QAKTE 385 (532)
Q Consensus 381 ~~~~~ 385 (532)
..+.+
T Consensus 256 ~~Ll~ 260 (337)
T 4g8k_A 256 QRLLE 260 (337)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 66664
No 20
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.97 E-value=3.3e-30 Score=255.09 Aligned_cols=220 Identities=15% Similarity=0.060 Sum_probs=172.2
Q ss_pred hhHHHHHHHHHhhCcHHHHHHHHHcC-----------CCcccccCCCCcHHHHHHHHHhCcHH----HHHcccccccccc
Q 009554 161 NFAVEMMYASSIFELPELVSLFQRRL-----------LNFVGKAVAEDIIPILLAAFHCQLSQ----LLAQCVDRIVRSD 225 (532)
Q Consensus 161 ~~~~~~L~~A~~~~~~~lv~~ll~~~-----------~~i~~~~~~~n~~t~L~~A~~~~~~~----Ll~~~~~~~~~~~ 225 (532)
....++||+|+..|....+..++..+ -.++.+ ..+|.||||+|+..|..+ |++.|++++.++.
T Consensus 13 ~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~ 90 (285)
T 3d9h_A 13 GLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGD--AVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITA 90 (285)
T ss_dssp -----------------------------CCSEECCCCTTCSS--SCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECT
T ss_pred hHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCC--CccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC
Confidence 34588999999999854444432221 123333 445599999999999844 8899999999999
Q ss_pred cCcchhhhcCCcchHHHHHHHHhhcCCCCCCCCccCCcccccCCcHHHHHhcCCCHHHHHHHHhcC-C--CCCCCchHHH
Q 009554 226 LDTISIEKELPTEVAEEIRMLRLKSFPDDENTAVEVDPLREKRIKRIHKALDSDDVELVRLLLSES-E--ITLDEANALH 302 (532)
Q Consensus 226 ~~~t~L~~a~~~~~~~~i~~lL~~~~~~~~~~~~~in~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~--in~~g~t~Lh 302 (532)
.|.||||.|+..+. .+++++|... + .+++.+|..|+||||+|+..|+.+++++|++.| + .+..|.||||
T Consensus 91 ~g~t~L~~A~~~g~-~~~v~~Ll~~--g-----a~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~ 162 (285)
T 3d9h_A 91 DHVSPLHEACLGGH-LSCVKILLKH--G-----AQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIH 162 (285)
T ss_dssp TCCCHHHHHHHTTC-HHHHHHHHHT--T-----CCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTTSCHHH
T ss_pred CCCCHHHHHHHCCc-HHHHHHHHHC--C-----CCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCCCCCCHHH
Confidence 99999999999998 6777777432 3 358999999999999999999999999999999 4 4577999999
Q ss_pred HHHHcCCHHHHHHHHHcCCCCCcCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCCcccHHH
Q 009554 303 YAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDLTLDGRSAVSICRRLTRPKDYQA 382 (532)
Q Consensus 303 ~A~~~g~~~~v~~LL~~~~advn~~d~~G~TpLh~Aa~~~~~~iv~~LL~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~ 382 (532)
+|+..|+.+++++|+..+ ++++.+|..|+||||+|+.+|+.+++++|+++|++++. |..|+||||+|++.++...++.
T Consensus 163 ~A~~~g~~~~v~~Ll~~g-~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~ 240 (285)
T 3d9h_A 163 EAARRGHVECVNSLIAYG-GNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACL 240 (285)
T ss_dssp HHHHHTCHHHHHHHHHTT-CCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHH
Confidence 999999999999999987 99999999999999999999999999999999999995 8999999999999999999999
Q ss_pred HHhcCCcccc
Q 009554 383 KTEQGKETNK 392 (532)
Q Consensus 383 ~~~~G~~~~~ 392 (532)
+.+.|.+++.
T Consensus 241 Ll~~gad~~~ 250 (285)
T 3d9h_A 241 LMDFGADTQA 250 (285)
T ss_dssp HHHTTCCTTC
T ss_pred HHHCCCCCCC
Confidence 9999887653
No 21
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.97 E-value=4.3e-30 Score=252.43 Aligned_cols=191 Identities=20% Similarity=0.142 Sum_probs=170.4
Q ss_pred CCCcHHHHHHHHHhCcHH----HHHcccc---cccccccCcchhhhcCCcchHHHHHHHHhhcCCCCCCCCccCCccccc
Q 009554 195 AEDIIPILLAAFHCQLSQ----LLAQCVD---RIVRSDLDTISIEKELPTEVAEEIRMLRLKSFPDDENTAVEVDPLREK 267 (532)
Q Consensus 195 ~~n~~t~L~~A~~~~~~~----Ll~~~~~---~~~~~~~~~t~L~~a~~~~~~~~i~~lL~~~~~~~~~~~~~in~~d~~ 267 (532)
..+|.||||+|+..|+.+ |++.+.+ ++.++..|.||||.|+..+. .+++++|+. +|+ +++.+|..
T Consensus 6 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~-~~~v~~Ll~--~ga-----~~~~~~~~ 77 (282)
T 1oy3_D 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGE-ASTVEKLYA--AGA-----GVLVAERG 77 (282)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTC-HHHHHHHHH--TTC-----CSSCCCTT
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCC-HHHHHHHHH--cCC-----CCCCCCCC
Confidence 345599999999999854 7788887 78899999999999999999 677777632 333 58899999
Q ss_pred CCcHHHHHhcCCCHHHHHHHHhcC-C--------------------------------------------------CCCC
Q 009554 268 RIKRIHKALDSDDVELVRLLLSES-E--------------------------------------------------ITLD 296 (532)
Q Consensus 268 g~t~Lh~A~~~g~~~~v~~Ll~~g-~--------------------------------------------------in~~ 296 (532)
|+||||+|+..|+.+++++|++.| . .|..
T Consensus 78 g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (282)
T 1oy3_D 78 GHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYD 157 (282)
T ss_dssp SCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTT
T ss_pred CCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCC
Confidence 999999999999999999999876 2 2467
Q ss_pred CchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCC-CChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcC
Q 009554 297 EANALHYAAAYCDPKVLSEVLSLGLADVNLRSSR-GYTVLHIGAMRKEPSVIVSLLTKGACASDLTLDGRSAVSICRRLT 375 (532)
Q Consensus 297 g~t~Lh~A~~~g~~~~v~~LL~~~~advn~~d~~-G~TpLh~Aa~~~~~~iv~~LL~~gad~~~~d~~G~TpL~~A~~~~ 375 (532)
|.||||+|+..|+.+++++||..+ ++++.++.. |+||||+|+.+|+.++|++|+++|++++.+|..|+||||+|+..+
T Consensus 158 g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~ 236 (282)
T 1oy3_D 158 GHTPLHVAVIHKDAEMVRLLRDAG-ADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRP 236 (282)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHHT-CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSS
T ss_pred CcCHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcC
Confidence 999999999999999999999987 999999865 999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHhcCCcccchh
Q 009554 376 RPKDYQAKTEQGKETNKDR 394 (532)
Q Consensus 376 ~~~~~~~~~~~G~~~~~~~ 394 (532)
+...++.+.+.|.+++...
T Consensus 237 ~~~~v~~Ll~~ga~~~~~~ 255 (282)
T 1oy3_D 237 NPILARLLRAHGAPEPEDG 255 (282)
T ss_dssp CHHHHHHHHHTTCCCCCCC
T ss_pred CcHHHHHHHHcCCCcCcCC
Confidence 9999999999999876443
No 22
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.97 E-value=1.9e-30 Score=257.64 Aligned_cols=200 Identities=17% Similarity=0.099 Sum_probs=179.7
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHcCCCcccccCCCCcHHHHHHHHHhCcHH----HHHcccccccccccCcchhhhcCCcc
Q 009554 163 AVEMMYASSIFELPELVSLFQRRLLNFVGKAVAEDIIPILLAAFHCQLSQ----LLAQCVDRIVRSDLDTISIEKELPTE 238 (532)
Q Consensus 163 ~~~~L~~A~~~~~~~lv~~ll~~~~~i~~~~~~~n~~t~L~~A~~~~~~~----Ll~~~~~~~~~~~~~~t~L~~a~~~~ 238 (532)
..++|+.|+..|..+++++|++++.+++.++.. +.||||+|+..|+.+ |+++|++++.++..|.||||.|+..+
T Consensus 40 ~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g 117 (299)
T 1s70_B 40 DGAVFLAACSSGDTEEVLRLLERGADINYANVD--GLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCG 117 (299)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTT--CCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred CccHHHHHHHcCCHHHHHHHHHcCCCCcccCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Confidence 478999999999999999999999999988554 499999999999844 88999999999999999999999999
Q ss_pred hHHHHHHHHhhcCCCCCCCCccCCcccccCCcHHHHHhcCCCHHHHHHHHhcC--C------------------------
Q 009554 239 VAEEIRMLRLKSFPDDENTAVEVDPLREKRIKRIHKALDSDDVELVRLLLSES--E------------------------ 292 (532)
Q Consensus 239 ~~~~i~~lL~~~~~~~~~~~~~in~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g--~------------------------ 292 (532)
. .+++++|.. +|+ +++..|..|.||||+|+..|+.++++.|+... +
T Consensus 118 ~-~~~v~~Ll~--~g~-----~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 189 (299)
T 1s70_B 118 Y-LDIAEYLIS--QGA-----HVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGH 189 (299)
T ss_dssp C-HHHHHHHHH--TTC-----CTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred C-HHHHHHHHh--CCC-----CCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccC
Confidence 9 677777743 233 58889999999999999999999998877542 1
Q ss_pred -----CCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCCcH
Q 009554 293 -----ITLDEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDLTLDGRSA 367 (532)
Q Consensus 293 -----in~~g~t~Lh~A~~~g~~~~v~~LL~~~~advn~~d~~G~TpLh~Aa~~~~~~iv~~LL~~gad~~~~d~~G~Tp 367 (532)
.+..|.||||+|+..|+.++++.|++.+ +++|.+|..|+||||+|+.+|+.+++++|+++|++++.+|..|+||
T Consensus 190 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~ 268 (299)
T 1s70_B 190 INDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR-YDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTA 268 (299)
T ss_dssp CCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCT
T ss_pred cchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcC-CCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence 2367999999999999999999999887 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 009554 368 VSICRR 373 (532)
Q Consensus 368 L~~A~~ 373 (532)
||+|+.
T Consensus 269 l~~A~~ 274 (299)
T 1s70_B 269 FDVADE 274 (299)
T ss_dssp TTSCCS
T ss_pred HHHHHH
Confidence 999964
No 23
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.97 E-value=2.7e-29 Score=254.31 Aligned_cols=215 Identities=20% Similarity=0.153 Sum_probs=179.3
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHcCCCcccccCCCCcHHHHHHHHHhCcHH----HHHcccccccccccCcchhhhcCCcc
Q 009554 163 AVEMMYASSIFELPELVSLFQRRLLNFVGKAVAEDIIPILLAAFHCQLSQ----LLAQCVDRIVRSDLDTISIEKELPTE 238 (532)
Q Consensus 163 ~~~~L~~A~~~~~~~lv~~ll~~~~~i~~~~~~~n~~t~L~~A~~~~~~~----Ll~~~~~~~~~~~~~~t~L~~a~~~~ 238 (532)
..++||+|+..+..+++++|++++++++.++..+ .||||+|+..|+.+ |+++|++++..+..|.||||.|+..+
T Consensus 58 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g--~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 135 (351)
T 3utm_A 58 KSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGG--LVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKN 135 (351)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC--CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCC--CcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC
Confidence 4789999999999999999999999998885444 89999999999844 88899999999999999999999888
Q ss_pred hHHHHHHHHhhcCCCCCCCCcc-------------------------------------------------CCcccccCC
Q 009554 239 VAEEIRMLRLKSFPDDENTAVE-------------------------------------------------VDPLREKRI 269 (532)
Q Consensus 239 ~~~~i~~lL~~~~~~~~~~~~~-------------------------------------------------in~~d~~g~ 269 (532)
. .+++++|... |++.+..+ ....+..|.
T Consensus 136 ~-~~~v~~Ll~~--g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 212 (351)
T 3utm_A 136 R-VEVCSLLLSH--GADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHE 212 (351)
T ss_dssp C-HHHHHHHHHT--TCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCC
T ss_pred C-HHHHHHHHHc--CCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCC
Confidence 8 6666666433 33111000 012346788
Q ss_pred cHHHHHhcC---CCHHHHHHHHhcC-CC---CCCCchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCChHHHHHHHcC
Q 009554 270 KRIHKALDS---DDVELVRLLLSES-EI---TLDEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRK 342 (532)
Q Consensus 270 t~Lh~A~~~---g~~~~v~~Ll~~g-~i---n~~g~t~Lh~A~~~g~~~~v~~LL~~~~advn~~d~~G~TpLh~Aa~~~ 342 (532)
||||+|+.. +..+++++|++.| ++ |..|+||||+|+..|+.+++++|++.| +++|.+|..|+||||+|+.+|
T Consensus 213 t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~n~~d~~g~t~L~~A~~~~ 291 (351)
T 3utm_A 213 TALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHG-AKMNALDSLGQTALHRAALAG 291 (351)
T ss_dssp CHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHT
T ss_pred CHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHcC
Confidence 999999999 5589999999999 54 588999999999999999999999987 999999999999999999999
Q ss_pred CHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCCcccHHHHHhcC
Q 009554 343 EPSVIVSLLTKGACASDLTLDGRSAVSICRRLTRPKDYQAKTEQG 387 (532)
Q Consensus 343 ~~~iv~~LL~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~~G 387 (532)
+.+++++|+++|++++.+|..|+||+|+|. ...++.+.+.+
T Consensus 292 ~~~~v~~Ll~~gad~~~~~~~g~tal~~a~----~~~~~~l~~~~ 332 (351)
T 3utm_A 292 HLQTCRLLLSYGSDPSIISLQGFTAAQMGN----EAVQQILSEST 332 (351)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHSC----HHHHHHHHHC-
T ss_pred cHHHHHHHHHcCCCCCCcCCCCCChhhhhh----HHHHHHHHhcc
Confidence 999999999999999999999999999983 34444444443
No 24
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.97 E-value=1.5e-29 Score=242.00 Aligned_cols=217 Identities=14% Similarity=0.120 Sum_probs=189.7
Q ss_pred hHHHHHHHHHhhCcHHHHHHHHHcCCCcccccCCCCcHHHHHHHHHhCcHH----HHHcccccccccc-cCcchhhhcCC
Q 009554 162 FAVEMMYASSIFELPELVSLFQRRLLNFVGKAVAEDIIPILLAAFHCQLSQ----LLAQCVDRIVRSD-LDTISIEKELP 236 (532)
Q Consensus 162 ~~~~~L~~A~~~~~~~lv~~ll~~~~~i~~~~~~~n~~t~L~~A~~~~~~~----Ll~~~~~~~~~~~-~~~t~L~~a~~ 236 (532)
+..++|+.|+..|..++++++++.+.+++.++.. +.||||+|+..+..+ |++.+.+++.... .+.|+||.|+.
T Consensus 8 ~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~ 85 (240)
T 3eu9_A 8 YSTWDIVKATQYGIYERCRELVEAGYDVRQPDKE--NVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATR 85 (240)
T ss_dssp GGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHH
T ss_pred ccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCC--CCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHH
Confidence 4478899999999999999999999999888544 499999999999844 8888888886554 49999999999
Q ss_pred cchHHHHHHHHhhcCCCCCCCCccCCcccccCCcHHHHHhcCCCHHHHHHHHhcC-C---CCCCCchHHHHHHHcCC-HH
Q 009554 237 TEVAEEIRMLRLKSFPDDENTAVEVDPLREKRIKRIHKALDSDDVELVRLLLSES-E---ITLDEANALHYAAAYCD-PK 311 (532)
Q Consensus 237 ~~~~~~i~~lL~~~~~~~~~~~~~in~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~---in~~g~t~Lh~A~~~g~-~~ 311 (532)
.+. .+++++|.. .+ .+++..+..|.||||+|+..|+.+++++|++.| + .+..|.||||+|+..++ .+
T Consensus 86 ~~~-~~~v~~Ll~--~g-----~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~ 157 (240)
T 3eu9_A 86 QGH-LSMVVQLMK--YG-----ADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVD 157 (240)
T ss_dssp HTC-HHHHHHHHH--TT-----CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSST
T ss_pred cCC-HHHHHHHHH--cC-----CCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHH
Confidence 998 666676632 23 348888999999999999999999999999999 4 46889999999997776 67
Q ss_pred HHHHHHHcCCCCCcCCCC-CCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCCcccHHHHHhcCCc
Q 009554 312 VLSEVLSLGLADVNLRSS-RGYTVLHIGAMRKEPSVIVSLLTKGACASDLTLDGRSAVSICRRLTRPKDYQAKTEQGKE 389 (532)
Q Consensus 312 ~v~~LL~~~~advn~~d~-~G~TpLh~Aa~~~~~~iv~~LL~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~~G~~ 389 (532)
+++.|+..+ ++++..+. .|+||||+|+.+|+.+++++|+++|++++.+|..|+||||+|++.++...++.+.+.|+.
T Consensus 158 ~~~~L~~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~ 235 (240)
T 3eu9_A 158 PTRLLLTFN-VSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQA 235 (240)
T ss_dssp THHHHHHTT-CCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC--
T ss_pred HHHHHHhcC-CCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhc
Confidence 777777776 99999997 999999999999999999999999999999999999999999999999999999988764
No 25
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.96 E-value=1.3e-29 Score=247.35 Aligned_cols=186 Identities=16% Similarity=0.101 Sum_probs=168.6
Q ss_pred CcHHHHHHHHHhCcHH----HHHcccccccccccCcchhhhcCCcchHHHHHHHHhhcCCCCCCCCccCCcccccCCcHH
Q 009554 197 DIIPILLAAFHCQLSQ----LLAQCVDRIVRSDLDTISIEKELPTEVAEEIRMLRLKSFPDDENTAVEVDPLREKRIKRI 272 (532)
Q Consensus 197 n~~t~L~~A~~~~~~~----Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~i~~lL~~~~~~~~~~~~~in~~d~~g~t~L 272 (532)
+|.||||+|+..|..+ |++.|++++.++..|.||||.|+..+. .+++++|... | .++|..|..|+|||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~-~~~v~~Ll~~--g-----~~~~~~~~~g~t~L 73 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGH-LSCVKILLKH--G-----AQVNGVTADWHTPL 73 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTC-HHHHHHHHHT--T-----CCTTCCCTTSCCHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCC-HHHHHHHHHC--C-----CCCCCCCCCCCCHH
Confidence 3589999999999844 889999999999999999999999999 6677776332 3 35899999999999
Q ss_pred HHHhcCCCHHHHHHHHhcC-C--CCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCChHHHHHHHcCCHHHHHH
Q 009554 273 HKALDSDDVELVRLLLSES-E--ITLDEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVS 349 (532)
Q Consensus 273 h~A~~~g~~~~v~~Ll~~g-~--in~~g~t~Lh~A~~~g~~~~v~~LL~~~~advn~~d~~G~TpLh~Aa~~~~~~iv~~ 349 (532)
|+|+..|+.+++++|++.| + .+.+|.||||+|+..|+.++++.|+..+ ++++.+|..|+||||+|+.+|+.+++++
T Consensus 74 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 152 (261)
T 2xai_A 74 FNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYG-GNIDHKISHLGTPLYLACENQQRACVKK 152 (261)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCSSCSCTTCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCBTTTBCHHHHHHHTTCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcC-CCCCcCCCCCCCHHHHHHHhCCHHHHHH
Confidence 9999999999999999999 4 4577999999999999999999999987 9999999999999999999999999999
Q ss_pred HHhCCCCCCccCCCCCcHHHHHHHcCCcccHHHHHhcCCcccc
Q 009554 350 LLTKGACASDLTLDGRSAVSICRRLTRPKDYQAKTEQGKETNK 392 (532)
Q Consensus 350 LL~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~~G~~~~~ 392 (532)
|+++|++++. |..|+||||+|++.++...++.+.+.|.+++.
T Consensus 153 Ll~~g~~~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~ 194 (261)
T 2xai_A 153 LLESGADVNQ-GKGQDSPLHAVARTASEELACLLMDFGADTQA 194 (261)
T ss_dssp HHHHTCCTTC-CBTTBCHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred HHHcCCCCCC-CCCCCChHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence 9999999996 89999999999999999999999999987654
No 26
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.96 E-value=1.3e-29 Score=246.08 Aligned_cols=193 Identities=15% Similarity=0.125 Sum_probs=146.1
Q ss_pred CcccccCCCCcHHHHHHHHHhC-------------c----HHHHHccccccc-ccccCcchhhhcCCcchHHHHHHHHhh
Q 009554 188 NFVGKAVAEDIIPILLAAFHCQ-------------L----SQLLAQCVDRIV-RSDLDTISIEKELPTEVAEEIRMLRLK 249 (532)
Q Consensus 188 ~i~~~~~~~n~~t~L~~A~~~~-------------~----~~Ll~~~~~~~~-~~~~~~t~L~~a~~~~~~~~i~~lL~~ 249 (532)
+++.+|. +|.||||+|+..| . ..|++.|.+++. .+..|.|+||.|+..+. .+++++|+.
T Consensus 2 dvn~~d~--~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~-~~~v~~Ll~ 78 (253)
T 1yyh_A 2 DVNVRGP--DGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSR-SDAAKRLLE 78 (253)
T ss_dssp ----------------------------------------------------CCCTTSCCHHHHHHHTTC-HHHHHHHHH
T ss_pred CCCCCCC--CCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCC-HHHHHHHHH
Confidence 4566644 4599999999977 3 338888988865 48899999999999998 666666633
Q ss_pred cCCCCCCCCccCCcccccCCcHHHHHhcCCCHHHHHHHHhcC--C---CCCCCchHHHHHHHcCCHHHHHHHHHcCCCCC
Q 009554 250 SFPDDENTAVEVDPLREKRIKRIHKALDSDDVELVRLLLSES--E---ITLDEANALHYAAAYCDPKVLSEVLSLGLADV 324 (532)
Q Consensus 250 ~~~~~~~~~~~in~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g--~---in~~g~t~Lh~A~~~g~~~~v~~LL~~~~adv 324 (532)
.| .+++..|..|+||||+|+..|+.+++++|++.| + .+..|.||||+|+..|+.+++++|+..+ +++
T Consensus 79 --~g-----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~ 150 (253)
T 1yyh_A 79 --AS-----ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH-ADV 150 (253)
T ss_dssp --TT-----CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTT-CCT
T ss_pred --cC-----CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcC-CCC
Confidence 23 358899999999999999999999999999998 3 3578999999999999999999999987 999
Q ss_pred cCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCCcccHHHHHhcCCccc
Q 009554 325 NLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDLTLDGRSAVSICRRLTRPKDYQAKTEQGKETN 391 (532)
Q Consensus 325 n~~d~~G~TpLh~Aa~~~~~~iv~~LL~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~~G~~~~ 391 (532)
|.+|..|+||||+|+.+|+.+++++|+++|++++.+|..|+||||+|+..|+...++.+.+.|.++.
T Consensus 151 ~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~ 217 (253)
T 1yyh_A 151 NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRD 217 (253)
T ss_dssp TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999987654
No 27
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.96 E-value=2.6e-29 Score=240.18 Aligned_cols=170 Identities=18% Similarity=0.178 Sum_probs=134.2
Q ss_pred ccccccccccCcchhhhcCCcchHHHHHHHHhhcCCCCCCCCccCCcccccCCcHHHHHhcCCCHHHHHHHHhcC-CCCC
Q 009554 217 CVDRIVRSDLDTISIEKELPTEVAEEIRMLRLKSFPDDENTAVEVDPLREKRIKRIHKALDSDDVELVRLLLSES-EITL 295 (532)
Q Consensus 217 ~~~~~~~~~~~~t~L~~a~~~~~~~~i~~lL~~~~~~~~~~~~~in~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~in~ 295 (532)
+++++.++..|.||||.|+..+. .+++++|... +++......+..|..|+||||+|+..|+.+++++|++.| +++.
T Consensus 27 g~~~~~~~~~g~t~L~~A~~~g~-~~~v~~Ll~~--~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~ 103 (232)
T 2rfa_A 27 GCEVHQRGAMGETALHIAALYDN-LEAAMVLMEA--APELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSA 103 (232)
T ss_dssp CSCTTCCCTTSCCHHHHHHHTTC-HHHHHHHHHH--CGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred CCCcccCCCCCCCHHHHHHHcCC-HHHHHHHHHc--CchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCc
Confidence 44444444444444444444444 3344444222 110011123667889999999999999999999999999 5442
Q ss_pred ----------------CCchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCChHHHHHHHcCCHHHH----HHHHhCCC
Q 009554 296 ----------------DEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVI----VSLLTKGA 355 (532)
Q Consensus 296 ----------------~g~t~Lh~A~~~g~~~~v~~LL~~~~advn~~d~~G~TpLh~Aa~~~~~~iv----~~LL~~ga 355 (532)
.|.||||+|+..|+.+++++|++.| +|+|.+|..|+||||+|+..|+.+++ ++|+++|+
T Consensus 104 ~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 104 RATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHG-ADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp CCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred ccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence 6999999999999999999999986 99999999999999999999999988 99999999
Q ss_pred CC------CccCCCCCcHHHHHHHcCCcccHHHHHhcCCcc
Q 009554 356 CA------SDLTLDGRSAVSICRRLTRPKDYQAKTEQGKET 390 (532)
Q Consensus 356 d~------~~~d~~G~TpL~~A~~~~~~~~~~~~~~~G~~~ 390 (532)
++ +.+|..|+||||+|++.|+...++.+.+.|...
T Consensus 183 ~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~~ 223 (232)
T 2rfa_A 183 GDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHI 223 (232)
T ss_dssp SCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred chhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence 98 589999999999999999999999999877543
No 28
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.96 E-value=5.7e-29 Score=226.60 Aligned_cols=154 Identities=24% Similarity=0.305 Sum_probs=134.9
Q ss_pred hhhhcCCcchHHHHHHHHhhcCCCCCCCCccCCcccccCCcHHHHHhcCCCHHHHHHHHhcC-CC---CCCCchHHHHHH
Q 009554 230 SIEKELPTEVAEEIRMLRLKSFPDDENTAVEVDPLREKRIKRIHKALDSDDVELVRLLLSES-EI---TLDEANALHYAA 305 (532)
Q Consensus 230 ~L~~a~~~~~~~~i~~lL~~~~~~~~~~~~~in~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~i---n~~g~t~Lh~A~ 305 (532)
+|+.|+..+. .+++++|+. .| +++|.+|..|+||||+|+..++.+++++|++.| ++ |..|+||||+|+
T Consensus 7 ~L~~Aa~~G~-~~~v~~Ll~--~G-----advn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~ 78 (169)
T 4gpm_A 7 RLIEAAENGN-KDRVKDLIE--NG-----ADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAA 78 (169)
T ss_dssp HHHHHHHTTC-HHHHHHHHH--TT-----CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHHcCC-HHHHHHHHH--CC-----CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHH
Confidence 5777777777 455555532 33 359999999999999999999999999999999 54 588999999999
Q ss_pred HcCCHHHHHHHHHcCCCCCcCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCCcccHHHHHh
Q 009554 306 AYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDLTLDGRSAVSICRRLTRPKDYQAKTE 385 (532)
Q Consensus 306 ~~g~~~~v~~LL~~~~advn~~d~~G~TpLh~Aa~~~~~~iv~~LL~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ 385 (532)
..|+.+++++||+.| +|+|.+|.+|+||||+|+.+|+.++|++|+++|++++.+|.+|+||||+|++.|+...++.+.+
T Consensus 79 ~~g~~~~v~~Ll~~g-advn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~ 157 (169)
T 4gpm_A 79 ENGHKEVVKLLISKG-ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEK 157 (169)
T ss_dssp HTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred HcCCHHHHHHHHHCc-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 999999999999987 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccc
Q 009554 386 QGKETNK 392 (532)
Q Consensus 386 ~G~~~~~ 392 (532)
.|+....
T Consensus 158 ~GA~ie~ 164 (169)
T 4gpm_A 158 QGGWLEH 164 (169)
T ss_dssp C------
T ss_pred CCCCcCC
Confidence 9987543
No 29
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.96 E-value=1.5e-28 Score=235.46 Aligned_cols=193 Identities=19% Similarity=0.179 Sum_probs=173.2
Q ss_pred CcccccCCCCcHHHHHHHHHhCcHH----HHHcccccccccccCcchhhhcCCcchHHHHHHHHhhcCCCCCCCCccCCc
Q 009554 188 NFVGKAVAEDIIPILLAAFHCQLSQ----LLAQCVDRIVRSDLDTISIEKELPTEVAEEIRMLRLKSFPDDENTAVEVDP 263 (532)
Q Consensus 188 ~i~~~~~~~n~~t~L~~A~~~~~~~----Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~i~~lL~~~~~~~~~~~~~in~ 263 (532)
+++.+ ..++.||||+|+..|..+ |+++|++++..+..|.||||.|+..+. .+++++|. . .+ .+++.
T Consensus 3 ~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll-~-~g-----~~~~~ 72 (237)
T 3b7b_A 3 NFKME--HQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNH-LEAVKYLI-K-AG-----ALVDP 72 (237)
T ss_dssp CCCCS--SCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC-HHHHHHHH-T-TT-----CCCCC
T ss_pred Ccccc--cCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCC-HHHHHHHH-h-CC-----CCCCC
Confidence 34444 445599999999999844 889999999999999999999999998 66777773 2 33 35888
Q ss_pred ccccCCcHHHHHhcCCCHHHHHHHHhcC--C---CCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCChHHHHH
Q 009554 264 LREKRIKRIHKALDSDDVELVRLLLSES--E---ITLDEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIG 338 (532)
Q Consensus 264 ~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g--~---in~~g~t~Lh~A~~~g~~~~v~~LL~~~~advn~~d~~G~TpLh~A 338 (532)
.+..|.||||+|+..|+.+++++|++.| + .+..|.||||+|+..|+.+++++|++.+ ++++.+|..|+||||+|
T Consensus 73 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A 151 (237)
T 3b7b_A 73 KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKG-SDINIRDNEENICLHWA 151 (237)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHH
T ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCccCCCCCCHHHHH
Confidence 8999999999999999999999999998 3 3578999999999999999999999987 99999999999999999
Q ss_pred HHcCCHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCCcccHHHHHhcCCccc
Q 009554 339 AMRKEPSVIVSLLTKGACASDLTLDGRSAVSICRRLTRPKDYQAKTEQGKETN 391 (532)
Q Consensus 339 a~~~~~~iv~~LL~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~~G~~~~ 391 (532)
+..|+.+++++|+++|++++.+|..|+||||+|++.++...++.+.+.|.++.
T Consensus 152 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~ 204 (237)
T 3b7b_A 152 AFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVT 204 (237)
T ss_dssp HHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT
T ss_pred HHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999888754
No 30
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.96 E-value=2.5e-28 Score=234.24 Aligned_cols=189 Identities=18% Similarity=0.133 Sum_probs=169.0
Q ss_pred CCCcHHHHHHHHHhCcHH----HHH----cccccccccccCcchhhhcCCcchHHHHHHHHhhcCCCCCCCCccCCcccc
Q 009554 195 AEDIIPILLAAFHCQLSQ----LLA----QCVDRIVRSDLDTISIEKELPTEVAEEIRMLRLKSFPDDENTAVEVDPLRE 266 (532)
Q Consensus 195 ~~n~~t~L~~A~~~~~~~----Ll~----~~~~~~~~~~~~~t~L~~a~~~~~~~~i~~lL~~~~~~~~~~~~~in~~d~ 266 (532)
+.+|.||||+|+..|+.+ |++ .+.+++.++..|.||||.|+..+. .+++++|.. .| .+++..|.
T Consensus 6 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll~--~g-----~~~~~~~~ 77 (241)
T 1k1a_A 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTL-PSVVRLLVT--AG-----ASPMALDR 77 (241)
T ss_dssp -CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTC-HHHHHHHHH--TT-----CCTTCCCT
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCC-HHHHHHHHH--cC-----CCccccCC
Confidence 345599999999999854 444 788999999999999999999998 677777743 33 24888899
Q ss_pred cCCcHHHHHhcCCCHHHHHHHHhcC-----C---CCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCcCCC-CCCChHHHH
Q 009554 267 KRIKRIHKALDSDDVELVRLLLSES-----E---ITLDEANALHYAAAYCDPKVLSEVLSLGLADVNLRS-SRGYTVLHI 337 (532)
Q Consensus 267 ~g~t~Lh~A~~~g~~~~v~~Ll~~g-----~---in~~g~t~Lh~A~~~g~~~~v~~LL~~~~advn~~d-~~G~TpLh~ 337 (532)
.|+||||+|+..|+.+++++|++.+ + .|..|.||||+|+..|+.+++++|+..+ ++++.++ ..|+||||+
T Consensus 78 ~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~~g~t~L~~ 156 (241)
T 1k1a_A 78 HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERG-ADIDAVDIKSGRSPLIH 156 (241)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTTCCCHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcC-CCcccccccCCCcHHHH
Confidence 9999999999999999999999987 2 3478999999999999999999999987 9999999 899999999
Q ss_pred HHHcCCHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCCcccHHHHHhcCCcccc
Q 009554 338 GAMRKEPSVIVSLLTKGACASDLTLDGRSAVSICRRLTRPKDYQAKTEQGKETNK 392 (532)
Q Consensus 338 Aa~~~~~~iv~~LL~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~~G~~~~~ 392 (532)
|+.+|+.+++++|+++|++++.+|..|+||||+|+..|+...++.+.+.|.+++.
T Consensus 157 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~ 211 (241)
T 1k1a_A 157 AVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSL 211 (241)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred HHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCC
Confidence 9999999999999999999999999999999999999999999999999987653
No 31
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.96 E-value=5.4e-29 Score=244.33 Aligned_cols=189 Identities=17% Similarity=0.072 Sum_probs=144.4
Q ss_pred CcHHHHHHHHHhCcHH----HHHcccc--------cccccccCcchhhhcCCcchHHHHHHHHhhcCCCCCCCCccCCcc
Q 009554 197 DIIPILLAAFHCQLSQ----LLAQCVD--------RIVRSDLDTISIEKELPTEVAEEIRMLRLKSFPDDENTAVEVDPL 264 (532)
Q Consensus 197 n~~t~L~~A~~~~~~~----Ll~~~~~--------~~~~~~~~~t~L~~a~~~~~~~~i~~lL~~~~~~~~~~~~~in~~ 264 (532)
.+.++|+.|+..|+.+ |++.+.+ ++..+..+.|+|+.++..+....++++|. . .| +++|.+
T Consensus 10 ~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll-~-~G-----advn~~ 82 (269)
T 4b93_B 10 REVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVP-A-SG-----LGVNVT 82 (269)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTCC------------------------------------------CC-----CCTTCC
T ss_pred cchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHH-H-CC-----CCCCCc
Confidence 3489999999999855 6666654 45567778899999887766555666663 2 33 369999
Q ss_pred cccCCcHHHHHhcCCCHHHHHHHHhcC-C---CCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCChHHHHHHH
Q 009554 265 REKRIKRIHKALDSDDVELVRLLLSES-E---ITLDEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAM 340 (532)
Q Consensus 265 d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~---in~~g~t~Lh~A~~~g~~~~v~~LL~~~~advn~~d~~G~TpLh~Aa~ 340 (532)
|.+|+||||+|+..|+.++|++|++.| + .+..|.||||+|+..++.++++.|+..+ +++|.+|..|+||||+|+.
T Consensus 83 d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g-~~~n~~d~~g~TpL~~A~~ 161 (269)
T 4b93_B 83 SQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSN-AKPNKKDLSGNTPLIYACS 161 (269)
T ss_dssp CTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCSCCCCTTCCCHHHHHHH
T ss_pred CCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHH
Confidence 999999999999999999999999999 4 4588999999999999999999999987 9999999999999999999
Q ss_pred cCCHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCCcccHHHHHhcCCcccch
Q 009554 341 RKEPSVIVSLLTKGACASDLTLDGRSAVSICRRLTRPKDYQAKTEQGKETNKD 393 (532)
Q Consensus 341 ~~~~~iv~~LL~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~~G~~~~~~ 393 (532)
+|+.++|++||++|+++|.+|..|+||||+|+..|+...++.+.+.|.+++..
T Consensus 162 ~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~ 214 (269)
T 4b93_B 162 GGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVL 214 (269)
T ss_dssp TTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCC
T ss_pred CCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999877543
No 32
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.96 E-value=1.9e-29 Score=249.67 Aligned_cols=207 Identities=14% Similarity=0.007 Sum_probs=170.0
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHcCCCcccccCCCCcHHHHHHHHHhCc----HHHHHcccccccccccCcchhhhcCCcc
Q 009554 163 AVEMMYASSIFELPELVSLFQRRLLNFVGKAVAEDIIPILLAAFHCQL----SQLLAQCVDRIVRSDLDTISIEKELPTE 238 (532)
Q Consensus 163 ~~~~L~~A~~~~~~~lv~~ll~~~~~i~~~~~~~n~~t~L~~A~~~~~----~~Ll~~~~~~~~~~~~~~t~L~~a~~~~ 238 (532)
..++||+|+..|..+++++|++++++++.+ +|.||||+|+..++ +.|+++|++++.++..|.||||.|+..+
T Consensus 31 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~----~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g 106 (285)
T 3kea_A 31 GHSASYYAIADNNVRLVCTLLNAGALKNLL----ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSG 106 (285)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHTTGGGSCC----TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred CCCHHHHHHHcCCHHHHHHHHhCCCCCCCC----CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcC
Confidence 478899999999999999999999888875 25889999998887 3488889999888888999999888888
Q ss_pred hHHHHHHHHhhcCCCCCCCCccCCcccccC-CcHHHHHhcCCCHHHHHHHHhcC-CC-CC-CCchHHHHHHHcCCHHHHH
Q 009554 239 VAEEIRMLRLKSFPDDENTAVEVDPLREKR-IKRIHKALDSDDVELVRLLLSES-EI-TL-DEANALHYAAAYCDPKVLS 314 (532)
Q Consensus 239 ~~~~i~~lL~~~~~~~~~~~~~in~~d~~g-~t~Lh~A~~~g~~~~v~~Ll~~g-~i-n~-~g~t~Lh~A~~~g~~~~v~ 314 (532)
. .+++++|... | ++++..+..| .||||+|+..|+.+++++|+++| ++ +. .|.||||+|+..|+.++++
T Consensus 107 ~-~~~v~~Ll~~--g-----a~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~ 178 (285)
T 3kea_A 107 N-MQTVKLFVKK--N-----WRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMI 178 (285)
T ss_dssp C-HHHHHHHHHH--C-----GGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHH
T ss_pred C-HHHHHHHHhc--C-----CCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHH
Confidence 8 5666666322 3 3588888888 69999999999999999999988 33 33 7889999999999999999
Q ss_pred HHHHcCCCCCcCCCCCCChH-HHHHHHcCCHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCCcccHHHHHhcCCc
Q 009554 315 EVLSLGLADVNLRSSRGYTV-LHIGAMRKEPSVIVSLLTKGACASDLTLDGRSAVSICRRLTRPKDYQAKTEQGKE 389 (532)
Q Consensus 315 ~LL~~~~advn~~d~~G~Tp-Lh~Aa~~~~~~iv~~LL~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~~G~~ 389 (532)
+|+..| +++|.+|..|+|| ||+|+.+|+.+++++|+++|++++.+|. .|+..|+...++.+.+.|.+
T Consensus 179 ~Ll~~g-ad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~-------~a~~~~~~~iv~~Ll~~g~~ 246 (285)
T 3kea_A 179 LLLDYM-TSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL-------ENVLLDDAEIAKMIIEKHVE 246 (285)
T ss_dssp HHHHHH-HHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG-------GGGTTTCHHHHHHHHHHHHH
T ss_pred HHHHcC-CCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh-------hhhhcCCHHHHHHHHHcCCC
Confidence 998886 8999999999987 9999999999999999999999988873 45666777777777776654
No 33
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.96 E-value=1.5e-28 Score=243.33 Aligned_cols=206 Identities=12% Similarity=0.024 Sum_probs=176.7
Q ss_pred hhCcHHHHHHHHHcCCCcccccCCCCcHHHHHHHHHhCcHH----HHHcccccccccccCcchhhhcCCcchHHHHHHHH
Q 009554 172 IFELPELVSLFQRRLLNFVGKAVAEDIIPILLAAFHCQLSQ----LLAQCVDRIVRSDLDTISIEKELPTEVAEEIRMLR 247 (532)
Q Consensus 172 ~~~~~~lv~~ll~~~~~i~~~~~~~n~~t~L~~A~~~~~~~----Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~i~~lL 247 (532)
.++..++.+++.+.+ ++.+| .+|.||||+|+..|..+ |+++|++++.++ |.||||.|+..+. .+++++|
T Consensus 9 ~~~~~~v~~lL~~~~--~~~~d--~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~-~~~v~~L 81 (285)
T 3kea_A 9 TWKSKQLKSFLSSKD--TFKAD--VHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLED-TKIVKIL 81 (285)
T ss_dssp GCCHHHHHHHHHSTT--TTCCC--TTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSS-CHHHHHH
T ss_pred hcCHHHHHHHHHhCC--CCccC--CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCC-HHHHHHH
Confidence 345677788887764 55654 44599999999999844 889999999884 8999999999998 6677777
Q ss_pred hhcCCCCCCCCccCCcccccCCcHHHHHhcCCCHHHHHHHHhcC-C---CCCCC-chHHHHHHHcCCHHHHHHHHHcCCC
Q 009554 248 LKSFPDDENTAVEVDPLREKRIKRIHKALDSDDVELVRLLLSES-E---ITLDE-ANALHYAAAYCDPKVLSEVLSLGLA 322 (532)
Q Consensus 248 ~~~~~~~~~~~~~in~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~---in~~g-~t~Lh~A~~~g~~~~v~~LL~~~~a 322 (532)
.. +|+ ++|.+|..|+||||+|+..|+.+++++|+++| + .|..| .||||+|+..|+.+++++|+..+ +
T Consensus 82 l~--~ga-----~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g-~ 153 (285)
T 3kea_A 82 LF--SGL-----DDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEI-P 153 (285)
T ss_dssp HH--TTC-----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTS-C
T ss_pred HH--CCC-----CCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCC-C
Confidence 42 333 58899999999999999999999999999999 4 45778 79999999999999999999987 6
Q ss_pred CCcCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCCcH-HHHHHHcCCcccHHHHHhcCCcccch
Q 009554 323 DVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDLTLDGRSA-VSICRRLTRPKDYQAKTEQGKETNKD 393 (532)
Q Consensus 323 dvn~~d~~G~TpLh~Aa~~~~~~iv~~LL~~gad~~~~d~~G~Tp-L~~A~~~~~~~~~~~~~~~G~~~~~~ 393 (532)
++... ..|+||||+|+.+|+.+++++|+++|++++.+|..|+|| ||+|+..++...++.+.+.|.+++..
T Consensus 154 ~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~ 224 (285)
T 3kea_A 154 STFDL-AILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSA 224 (285)
T ss_dssp TTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTT
T ss_pred ccccc-cCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCC
Confidence 66322 289999999999999999999999999999999999998 99999999999999999999876543
No 34
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.96 E-value=2.3e-28 Score=228.11 Aligned_cols=181 Identities=16% Similarity=0.121 Sum_probs=150.2
Q ss_pred HHHHHHHHHhCcHH----HHHccc-ccccccccCcchhhhcCCcchHHHHHHHHhhcCCCCCCCCccCCcccccCCcHHH
Q 009554 199 IPILLAAFHCQLSQ----LLAQCV-DRIVRSDLDTISIEKELPTEVAEEIRMLRLKSFPDDENTAVEVDPLREKRIKRIH 273 (532)
Q Consensus 199 ~t~L~~A~~~~~~~----Ll~~~~-~~~~~~~~~~t~L~~a~~~~~~~~i~~lL~~~~~~~~~~~~~in~~d~~g~t~Lh 273 (532)
.++|+.|+..|..+ |+..+. +++..+..|.||||.|+..+. .+++++|.. .| .+++..|..|+||||
T Consensus 6 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll~--~g-----~~~~~~~~~g~t~l~ 77 (201)
T 3hra_A 6 VGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNND-IEIAKALID--RG-----ADINLQNSISDSPYL 77 (201)
T ss_dssp TTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTC-HHHHHHHHH--TT-----CCTTCCCTTSCCHHH
T ss_pred ccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCC-HHHHHHHHH--cC-----CCCCCCCCCCCCHHH
Confidence 56666666666532 333333 666666666666766666666 556666632 23 358889999999999
Q ss_pred HHhcCCCHHHHHHHHhcC--C---CCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCChHHHHHHHcCC-----
Q 009554 274 KALDSDDVELVRLLLSES--E---ITLDEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKE----- 343 (532)
Q Consensus 274 ~A~~~g~~~~v~~Ll~~g--~---in~~g~t~Lh~A~~~g~~~~v~~LL~~~~advn~~d~~G~TpLh~Aa~~~~----- 343 (532)
+|+..|+.+++++|++.+ + .|..|.||||+|+..|+.+++++|++.++++++.+|..|+||||+|+..++
T Consensus 78 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~ 157 (201)
T 3hra_A 78 YAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLY 157 (201)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHH
T ss_pred HHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhH
Confidence 999999999999999655 3 457899999999999999999999999889999999999999999999998
Q ss_pred HHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCCcccHHHHHhcC
Q 009554 344 PSVIVSLLTKGACASDLTLDGRSAVSICRRLTRPKDYQAKTEQG 387 (532)
Q Consensus 344 ~~iv~~LL~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~~G 387 (532)
.+++++|+++|++++.+|..|+||||+|++.|+...++.+.+.|
T Consensus 158 ~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 158 QDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred HHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 99999999999999999999999999999999999999988766
No 35
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.96 E-value=1.1e-29 Score=260.05 Aligned_cols=226 Identities=9% Similarity=-0.019 Sum_probs=186.4
Q ss_pred cccccccCCCchhhhh-HHHHHHHHHhhCcHHHHHHHHHcCCCcccccCCCCcHHHHHHHHHhCcHH----HHHc----c
Q 009554 147 VDNICVHDACRPAINF-AVEMMYASSIFELPELVSLFQRRLLNFVGKAVAEDIIPILLAAFHCQLSQ----LLAQ----C 217 (532)
Q Consensus 147 vd~~~~h~a~~~~~~~-~~~~L~~A~~~~~~~lv~~ll~~~~~i~~~~~~~n~~t~L~~A~~~~~~~----Ll~~----~ 217 (532)
++.++.+++..+..+. ..++||+|+..+..+++++|++++.+++.. ++.||||+|+..++.+ |++. +
T Consensus 36 v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~----~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~ 111 (364)
T 3ljn_A 36 VRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLW----HGQKPIHLAVMANKTDLVVALVEGAKERG 111 (364)
T ss_dssp HHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCB----TTBCHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccc----CCCCHHHHHHHcCCHHHHHHHHHhccccC
Confidence 3444445555444443 489999999999999999999999976652 4589999999999855 6676 6
Q ss_pred ccccc-----------------ccccCcchhhhcCCcc--hHHHHHHHHhhcCCCCCCCCccCCcccccCCcHHHHHhcC
Q 009554 218 VDRIV-----------------RSDLDTISIEKELPTE--VAEEIRMLRLKSFPDDENTAVEVDPLREKRIKRIHKALDS 278 (532)
Q Consensus 218 ~~~~~-----------------~~~~~~t~L~~a~~~~--~~~~i~~lL~~~~~~~~~~~~~in~~d~~g~t~Lh~A~~~ 278 (532)
.+++. ++..|.|+||.|+..+ . .+++++|+.. | +++|..|..|+||||+|+..
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~-~~~v~~Ll~~--g-----a~~~~~d~~g~t~L~~A~~~ 183 (364)
T 3ljn_A 112 QMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEY-LEMIKILVQL--G-----ASPTAKDKADETPLMRAMEF 183 (364)
T ss_dssp CCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGG-HHHHHHHHHH--T-----CCTTCCCTTSCCHHHHHHHT
T ss_pred CCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCch-HHHHHHHHHc--C-----CCCcccCCCCCCHHHHHHHc
Confidence 66666 8889999999999988 7 6777777433 3 35899999999999999999
Q ss_pred CCHHHHHHHHhcC-C-----C---CCCCchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCChHHHHHHHcCCHHHHHH
Q 009554 279 DDVELVRLLLSES-E-----I---TLDEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVS 349 (532)
Q Consensus 279 g~~~~v~~Ll~~g-~-----i---n~~g~t~Lh~A~~~g~~~~v~~LL~~~~advn~~d~~G~TpLh~Aa~~~~~~iv~~ 349 (532)
|+.++|++|++.| + + |..|+||||+|+..|+.++++.||+.| +|+|.+|..|+||||+|+..|+.+++++
T Consensus 184 g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-ad~~~~d~~g~tpL~~A~~~g~~~~v~~ 262 (364)
T 3ljn_A 184 RNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMG-IDVNMEDNEHTVPLYLSVRAAMVLLTKE 262 (364)
T ss_dssp TCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHHHHTCCHHHHHH
T ss_pred CCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHhChHHHHHH
Confidence 9999999999988 4 4 478999999999999999999999987 9999999999999999999999999999
Q ss_pred HHhCCCCCCc------------cCCCCCcHHHHHHHcCCcccHHHHHh
Q 009554 350 LLTKGACASD------------LTLDGRSAVSICRRLTRPKDYQAKTE 385 (532)
Q Consensus 350 LL~~gad~~~------------~d~~G~TpL~~A~~~~~~~~~~~~~~ 385 (532)
|+++|++++. .+..|+|||++|+..++...+..+..
T Consensus 263 Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~ 310 (364)
T 3ljn_A 263 LLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQ 310 (364)
T ss_dssp HHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHH
T ss_pred HHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHHH
Confidence 9999987643 45678899988887665544444443
No 36
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.96 E-value=4.3e-28 Score=230.71 Aligned_cols=188 Identities=18% Similarity=0.110 Sum_probs=165.0
Q ss_pred cHHHHHHHHHhCcHH----HHHccccccc-ccccCcchhhhcCCcchHHHHHHHHhhcCCCCCCCCccCCc-ccccCCcH
Q 009554 198 IIPILLAAFHCQLSQ----LLAQCVDRIV-RSDLDTISIEKELPTEVAEEIRMLRLKSFPDDENTAVEVDP-LREKRIKR 271 (532)
Q Consensus 198 ~~t~L~~A~~~~~~~----Ll~~~~~~~~-~~~~~~t~L~~a~~~~~~~~i~~lL~~~~~~~~~~~~~in~-~d~~g~t~ 271 (532)
|.||||+|+..|..+ |++.+.+.+. ++..|.||||.|+..+. .+++++|...+.. .+++. .+..|+||
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll~~~~~-----~~~~~~~~~~g~t~ 75 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQA-HEITSFLLSKMEN-----VNLDDYPDDSGWTP 75 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTC-HHHHHHHHHTCTT-----CCGGGCCCTTSCCH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCC-HHHHHHHHhcccc-----ccccccCCCCCCCH
Confidence 368999999999844 7777777665 88999999999999998 6777777433222 23555 78899999
Q ss_pred HHHHhcCCCHHHHHHHHhcC---C---CCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCChHHHHHHHcCCHH
Q 009554 272 IHKALDSDDVELVRLLLSES---E---ITLDEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPS 345 (532)
Q Consensus 272 Lh~A~~~g~~~~v~~Ll~~g---~---in~~g~t~Lh~A~~~g~~~~v~~LL~~~~advn~~d~~G~TpLh~Aa~~~~~~ 345 (532)
||+|+..|+.+++++|++.| + .+..|.||||+|+..|+.+++++|++.+ ++++.+|..|+||||+|+..|+.+
T Consensus 76 L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~ 154 (228)
T 2dzn_A 76 FHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENG-ASVRIKDKFNQIPLHRAASVGSLK 154 (228)
T ss_dssp HHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcC-CCccccCCCCCCHHHHHHHcCCHH
Confidence 99999999999999999997 2 3578999999999999999999999986 999999999999999999999999
Q ss_pred HHHHHHhCC-CCCCccCCCCCcHHHHHHHcCCcccHHHHH-hcCCcccc
Q 009554 346 VIVSLLTKG-ACASDLTLDGRSAVSICRRLTRPKDYQAKT-EQGKETNK 392 (532)
Q Consensus 346 iv~~LL~~g-ad~~~~d~~G~TpL~~A~~~~~~~~~~~~~-~~G~~~~~ 392 (532)
++++|+++| ++++.+|..|+||||+|+..++...++.+. +.|.++..
T Consensus 155 ~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~ 203 (228)
T 2dzn_A 155 LIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDL 203 (228)
T ss_dssp HHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCC
T ss_pred HHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCc
Confidence 999999999 999999999999999999999999999999 78887653
No 37
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.96 E-value=2.3e-29 Score=241.44 Aligned_cols=187 Identities=20% Similarity=0.188 Sum_probs=164.3
Q ss_pred CCcHHHHHHHHHhCcHH----HHHcc----cccccccccCcchhhhcCCcchHHHHHHHHhhcCCCCCCCCccCCccccc
Q 009554 196 EDIIPILLAAFHCQLSQ----LLAQC----VDRIVRSDLDTISIEKELPTEVAEEIRMLRLKSFPDDENTAVEVDPLREK 267 (532)
Q Consensus 196 ~n~~t~L~~A~~~~~~~----Ll~~~----~~~~~~~~~~~t~L~~a~~~~~~~~i~~lL~~~~~~~~~~~~~in~~d~~ 267 (532)
.+|.||||+|+..|..+ |++.+ .+++.++..|.||||.|+..+. .+++++|+ . .| .+++.+|..
T Consensus 6 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll-~-~g-----~~~~~~~~~ 77 (236)
T 1ikn_D 6 EDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQ-PEIAEALL-G-AG-----CDPELRDFR 77 (236)
T ss_dssp -CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTC-HHHHHCCC-S-CC-----CCSCCCCTT
T ss_pred CCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCC-HHHHHHHH-H-cC-----CCCCCcCCC
Confidence 44589999999999744 44444 3688889999999999999888 67777773 2 33 358899999
Q ss_pred CCcHHHHHhcCCCHHHHHHHHhcC-C---------CCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCC-CCChHHH
Q 009554 268 RIKRIHKALDSDDVELVRLLLSES-E---------ITLDEANALHYAAAYCDPKVLSEVLSLGLADVNLRSS-RGYTVLH 336 (532)
Q Consensus 268 g~t~Lh~A~~~g~~~~v~~Ll~~g-~---------in~~g~t~Lh~A~~~g~~~~v~~LL~~~~advn~~d~-~G~TpLh 336 (532)
|+||||+|+..|+.+++++|++.| + .+..|.||||+|+..|+.+++++||..+ ++++.++. .|+||||
T Consensus 78 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~~g~tpL~ 156 (236)
T 1ikn_D 78 GNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLG-ADVNAQEPCNGRTALH 156 (236)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHT-CCTTCCCTTTCCCHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCCHHH
Confidence 999999999999999999999987 2 3477999999999999999999999987 99999997 9999999
Q ss_pred HHHHcCCHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCCcccHHHHHhcCCccc
Q 009554 337 IGAMRKEPSVIVSLLTKGACASDLTLDGRSAVSICRRLTRPKDYQAKTEQGKETN 391 (532)
Q Consensus 337 ~Aa~~~~~~iv~~LL~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~~G~~~~ 391 (532)
+|+..|+.+++++|+++|++++.+|..|+||||+|+..++...++.+.+.|..+.
T Consensus 157 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 211 (236)
T 1ikn_D 157 LAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENL 211 (236)
T ss_dssp HHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGG
T ss_pred HHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhh
Confidence 9999999999999999999999999999999999999999999999999998764
No 38
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.95 E-value=7.5e-29 Score=255.01 Aligned_cols=216 Identities=12% Similarity=0.106 Sum_probs=185.9
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHcCCCcccccCCCCcHHHHHHHHHhCcHH------------HHHcccccccccccCcch
Q 009554 163 AVEMMYASSIFELPELVSLFQRRLLNFVGKAVAEDIIPILLAAFHCQLSQ------------LLAQCVDRIVRSDLDTIS 230 (532)
Q Consensus 163 ~~~~L~~A~~~~~~~lv~~ll~~~~~i~~~~~~~n~~t~L~~A~~~~~~~------------Ll~~~~~~~~~~~~~~t~ 230 (532)
..++||.|+..+. +++++++.. +++.+| ...|.||||+|+..|+.+ |++.|++++.++..|.||
T Consensus 94 g~t~L~~Aa~~~~-~~~~~L~~~--~~n~~d-~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~Tp 169 (373)
T 2fo1_E 94 SPIKLHTEAAGSY-AITEPITRE--SVNIID-PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTP 169 (373)
T ss_dssp CCCHHHHHHHSSS-CCCSCCSTT--TTTTCC-CSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCH
T ss_pred CccHHHHHhcCCc-hHHHHhccc--cccccC-CcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCH
Confidence 3789999999665 677776554 444443 234699999999998732 348999999999999999
Q ss_pred hhhcCCcchHHHHHHHHhhcCCCCCCCCccCCcccccCCcHHHHHhcCCCHHHHHHHHhcC----C---CCCCCchHHHH
Q 009554 231 IEKELPTEVAEEIRMLRLKSFPDDENTAVEVDPLREKRIKRIHKALDSDDVELVRLLLSES----E---ITLDEANALHY 303 (532)
Q Consensus 231 L~~a~~~~~~~~i~~lL~~~~~~~~~~~~~in~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g----~---in~~g~t~Lh~ 303 (532)
||.|+..+. .+++++|+. .| ++++..|..|.||||+|+..|+.+++++|++.| + .|..|.||||+
T Consensus 170 L~~A~~~g~-~~iv~~Ll~--~g-----a~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~ 241 (373)
T 2fo1_E 170 LMLAVLARR-RRLVAYLMK--AG-----ADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMI 241 (373)
T ss_dssp HHHHHHHTC-HHHHHHHHH--TT-----CCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHH
T ss_pred HHHHHHcCh-HHHHHHHHH--CC-----CCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHH
Confidence 999999999 677777742 33 358899999999999999999999999999976 3 46899999999
Q ss_pred HHHcC---CHHHHHHHHHcCCCCCcC--------CCCCCChHHHHHHHcCCHHHHHHHHhCC-CCCCccCCCCCcHHHHH
Q 009554 304 AAAYC---DPKVLSEVLSLGLADVNL--------RSSRGYTVLHIGAMRKEPSVIVSLLTKG-ACASDLTLDGRSAVSIC 371 (532)
Q Consensus 304 A~~~g---~~~~v~~LL~~~~advn~--------~d~~G~TpLh~Aa~~~~~~iv~~LL~~g-ad~~~~d~~G~TpL~~A 371 (532)
|+..+ +.+++++|+..+ ++++. +|..|+||||+|+.+|+.++|++|+++| ++++.+|.+|+||||+|
T Consensus 242 A~~~~~~~~~~~v~~Ll~~g-~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A 320 (373)
T 2fo1_E 242 VAHNEGRDQVASAKLLVEKG-AKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLA 320 (373)
T ss_dssp HHHSCSTTHHHHHHHHHHHT-CCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHH
T ss_pred HHHhCCcchHHHHHHHHHCC-CCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHH
Confidence 99998 899999999997 99986 6789999999999999999999999875 99999999999999999
Q ss_pred HHcCCcccHHHHHhcCCccc
Q 009554 372 RRLTRPKDYQAKTEQGKETN 391 (532)
Q Consensus 372 ~~~~~~~~~~~~~~~G~~~~ 391 (532)
+..|+...++.+.+.|..++
T Consensus 321 ~~~g~~~iv~~Ll~~gad~~ 340 (373)
T 2fo1_E 321 AQEGRIEVVMYLIQQGASVE 340 (373)
T ss_dssp HHHTCHHHHHHHHHTTCCSS
T ss_pred HHcCCHHHHHHHHHcCCCcc
Confidence 99999999999999988754
No 39
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.95 E-value=8.1e-29 Score=240.64 Aligned_cols=196 Identities=17% Similarity=0.156 Sum_probs=156.4
Q ss_pred HHHHHHHHHhhCcHH----HHHHHHHcCCCccc----ccCCCCcHHHHHHHHHh---Cc----HHHHHcccccccccccC
Q 009554 163 AVEMMYASSIFELPE----LVSLFQRRLLNFVG----KAVAEDIIPILLAAFHC---QL----SQLLAQCVDRIVRSDLD 227 (532)
Q Consensus 163 ~~~~L~~A~~~~~~~----lv~~ll~~~~~i~~----~~~~~n~~t~L~~A~~~---~~----~~Ll~~~~~~~~~~~~~ 227 (532)
..++||.|+..|..+ +++++++.+.+++. +|.. |.||||+|+.. ++ +.|++.|++++..+.
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~--g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~-- 77 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGST--GKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKP-- 77 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTT--TBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSC--
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCC--CCCHHHHHHHccccchHHHHHHHHhcCCcccchhh--
Confidence 456777777777775 56666677777776 5333 37777777777 55 335555555544321
Q ss_pred cchhhhcCCcchHHHHHHHHhhcCCCCCCCCccCCcccccCCcHHHHHhcCCCHHHHHHHHhcC-CCC---CC-------
Q 009554 228 TISIEKELPTEVAEEIRMLRLKSFPDDENTAVEVDPLREKRIKRIHKALDSDDVELVRLLLSES-EIT---LD------- 296 (532)
Q Consensus 228 ~t~L~~a~~~~~~~~i~~lL~~~~~~~~~~~~~in~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~in---~~------- 296 (532)
++ + ......|..|+||||+|+..|+.+++++|++.| ++| ..
T Consensus 78 ------------------~~---------~-~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~ 129 (256)
T 2etb_A 78 ------------------LV---------N-AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQ 129 (256)
T ss_dssp ------------------GG---------G-CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCS
T ss_pred ------------------hc---------c-cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccc
Confidence 00 0 012334678999999999999999999999999 554 33
Q ss_pred ------CchHHHHHHHcCCHHHHHHHHHc--CCCCCcCCCCCCChHHHHHHH--cCCHH-------HHHHHHhCCCCC--
Q 009554 297 ------EANALHYAAAYCDPKVLSEVLSL--GLADVNLRSSRGYTVLHIGAM--RKEPS-------VIVSLLTKGACA-- 357 (532)
Q Consensus 297 ------g~t~Lh~A~~~g~~~~v~~LL~~--~~advn~~d~~G~TpLh~Aa~--~~~~~-------iv~~LL~~gad~-- 357 (532)
|+||||+|+..|+.+++++||+. .|+++|.+|..|+||||+|+. .++.+ ++++|+++|+++
T Consensus 130 ~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~ 209 (256)
T 2etb_A 130 GTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCP 209 (256)
T ss_dssp SSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHST
T ss_pred cccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCccc
Confidence 99999999999999999999993 459999999999999999999 88988 999999999999
Q ss_pred -----CccCCCCCcHHHHHHHcCCcccHHHHHhcCCcc
Q 009554 358 -----SDLTLDGRSAVSICRRLTRPKDYQAKTEQGKET 390 (532)
Q Consensus 358 -----~~~d~~G~TpL~~A~~~~~~~~~~~~~~~G~~~ 390 (532)
+.+|..|+||||+|+..|+...++.+.+.|...
T Consensus 210 ~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~ 247 (256)
T 2etb_A 210 TVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSG 247 (256)
T ss_dssp TCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC
Confidence 999999999999999999999999999887653
No 40
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.95 E-value=1.7e-27 Score=225.89 Aligned_cols=204 Identities=13% Similarity=0.048 Sum_probs=176.7
Q ss_pred cccccccccCCCchhh--hhHHHHHHHHHhhCcHHHHHHHHHcCCCcccccCCCCcHHHHHHHHHhCcHH----HHHccc
Q 009554 145 TCVDNICVHDACRPAI--NFAVEMMYASSIFELPELVSLFQRRLLNFVGKAVAEDIIPILLAAFHCQLSQ----LLAQCV 218 (532)
Q Consensus 145 ~cvd~~~~h~a~~~~~--~~~~~~L~~A~~~~~~~lv~~ll~~~~~i~~~~~~~n~~t~L~~A~~~~~~~----Ll~~~~ 218 (532)
.+++.++.+++..+.. ....++||+|+..+..+++++|++++.+++.++..+ .||||+|+..+..+ |++.+.
T Consensus 5 ~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g--~t~L~~A~~~~~~~~v~~Ll~~~~ 82 (223)
T 2f8y_A 5 AVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMG--RTPLHAAVSADAQGVFQILIRNRA 82 (223)
T ss_dssp CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS--CCHHHHHHHTTCHHHHHHHHHBTT
T ss_pred HHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC--CCHHHHHHHcCCHHHHHHHHHcCC
Confidence 3455566666666543 345899999999999999999999999999885444 99999999999854 777776
Q ss_pred -ccccccccCcchhhhcCCcchHHHHHHHHhhcCCCCCCCCccCCcccccCCcHHHHHhcCCCHHHHHHHHhcC-CC---
Q 009554 219 -DRIVRSDLDTISIEKELPTEVAEEIRMLRLKSFPDDENTAVEVDPLREKRIKRIHKALDSDDVELVRLLLSES-EI--- 293 (532)
Q Consensus 219 -~~~~~~~~~~t~L~~a~~~~~~~~i~~lL~~~~~~~~~~~~~in~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~i--- 293 (532)
+++.++..|.|+||.|+..+. .+++++|.. .+ .+++..|..|+||||+|+..|+.+++++|++.| ++
T Consensus 83 ~~~~~~~~~g~t~L~~A~~~~~-~~~~~~Ll~--~g-----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~ 154 (223)
T 2f8y_A 83 TDLDARMHDGTTPLILAARLAV-EGMLEDLIN--SH-----ADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQ 154 (223)
T ss_dssp SCTTCCCTTCCCHHHHHHHHTC-HHHHHHHHH--TT-----CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred CCcccCCCCCCcHHHHHHHhCc-HHHHHHHHH--cC-----CCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCc
Confidence 888899999999999999998 667777743 33 358899999999999999999999999999999 44
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCc
Q 009554 294 TLDEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASD 359 (532)
Q Consensus 294 n~~g~t~Lh~A~~~g~~~~v~~LL~~~~advn~~d~~G~TpLh~Aa~~~~~~iv~~LL~~gad~~~ 359 (532)
|..|.||||+|+..|+.+++++|++.+ ++++.+|..|+||||+|+.+|+.+++++|+++|+....
T Consensus 155 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~~ 219 (223)
T 2f8y_A 155 NNREETPLFLAAREGSYETAKVLLDHF-ANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSP 219 (223)
T ss_dssp CTTCCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSCC
T ss_pred CCCCcCHHHHHHHcCCHHHHHHHHHcC-CCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCccc
Confidence 588999999999999999999999997 99999999999999999999999999999999997643
No 41
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.95 E-value=9.4e-28 Score=218.55 Aligned_cols=156 Identities=21% Similarity=0.204 Sum_probs=125.1
Q ss_pred HHHHHHHHhhCcHHHHHHHHHcCCCcccccCCCCcHHHHHHHHHhCcHHHHHcccccccccccCcchhhhcCCcchHHHH
Q 009554 164 VEMMYASSIFELPELVSLFQRRLLNFVGKAVAEDIIPILLAAFHCQLSQLLAQCVDRIVRSDLDTISIEKELPTEVAEEI 243 (532)
Q Consensus 164 ~~~L~~A~~~~~~~lv~~ll~~~~~i~~~~~~~n~~t~L~~A~~~~~~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~i 243 (532)
-+.|+.|+..|..+++++|+++|++++.+|..+ .|||++|+..+... +
T Consensus 5 g~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g--~t~l~~a~~~~~~~------------------------------~ 52 (169)
T 4gpm_A 5 GKRLIEAAENGNKDRVKDLIENGADVNASDSDG--RTPLHHAAENGHKE------------------------------V 52 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS--CCHHHHHHHTTCHH------------------------------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC--CCHHHHHHHcCCHH------------------------------H
Confidence 456777778888888888888888777764433 77777777666543 3
Q ss_pred HHHHhhcCCCCCCCCccCCcccccCCcHHHHHhcCCCHHHHHHHHhcC-CC---CCCCchHHHHHHHcCCHHHHHHHHHc
Q 009554 244 RMLRLKSFPDDENTAVEVDPLREKRIKRIHKALDSDDVELVRLLLSES-EI---TLDEANALHYAAAYCDPKVLSEVLSL 319 (532)
Q Consensus 244 ~~lL~~~~~~~~~~~~~in~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~i---n~~g~t~Lh~A~~~g~~~~v~~LL~~ 319 (532)
+++|+ . .| .+++.+|..|+||||+|+..|+.++|++|++.| ++ |.+|+||||+|+..|+.++++.||+.
T Consensus 53 ~~~ll-~-~g-----ad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~ 125 (169)
T 4gpm_A 53 VKLLI-S-KG-----ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK 125 (169)
T ss_dssp HHHHH-H-TT-----CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHH-h-cc-----cchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 33332 1 23 358889999999999999999999999999999 54 58899999999999999999999998
Q ss_pred CCCCCcCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCc
Q 009554 320 GLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASD 359 (532)
Q Consensus 320 ~~advn~~d~~G~TpLh~Aa~~~~~~iv~~LL~~gad~~~ 359 (532)
| +|++.+|.+|+||||+|+.+|+.+++++|+++||+++.
T Consensus 126 g-ad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie~ 164 (169)
T 4gpm_A 126 G-ADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLEH 164 (169)
T ss_dssp T-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC------
T ss_pred C-CCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCC
Confidence 7 99999999999999999999999999999999999864
No 42
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.95 E-value=1.8e-27 Score=227.09 Aligned_cols=184 Identities=16% Similarity=0.138 Sum_probs=164.5
Q ss_pred HHHHHHHHHhCcHH----HHHcc-cccccccccCcchhhhcCCcchHHHHHHHHhhcCCCCCCCCccCCcccccCCcHHH
Q 009554 199 IPILLAAFHCQLSQ----LLAQC-VDRIVRSDLDTISIEKELPTEVAEEIRMLRLKSFPDDENTAVEVDPLREKRIKRIH 273 (532)
Q Consensus 199 ~t~L~~A~~~~~~~----Ll~~~-~~~~~~~~~~~t~L~~a~~~~~~~~i~~lL~~~~~~~~~~~~~in~~d~~g~t~Lh 273 (532)
.++|+.|+..|..+ |++.+ ...+.++..|.|+||.|+..+. .+++++|... + .+++..|..|+||||
T Consensus 7 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~-~~~v~~Ll~~--g-----~~~~~~~~~g~t~L~ 78 (231)
T 3aji_A 7 NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGH-TEIVEFLLQL--G-----VPVNDKDDAGWSPLH 78 (231)
T ss_dssp SSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTC-HHHHHHHHHT--T-----CCSCCCCTTSCCHHH
T ss_pred cchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCc-HHHHHHHHHh--C-----CCCCCcCCCCCCHHH
Confidence 68999999999854 44443 4467788999999999999998 6666666322 3 358889999999999
Q ss_pred HHhcCCCHHHHHHHHhcC-C---CCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCChHHHHHHHcCCHHHHHH
Q 009554 274 KALDSDDVELVRLLLSES-E---ITLDEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVS 349 (532)
Q Consensus 274 ~A~~~g~~~~v~~Ll~~g-~---in~~g~t~Lh~A~~~g~~~~v~~LL~~~~advn~~d~~G~TpLh~Aa~~~~~~iv~~ 349 (532)
+|+..|+.+++++|++.| + .|..|.||||+|+..|+.+++++|+..+ ++++.+|..|+||||+|+..|+.+++++
T Consensus 79 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 157 (231)
T 3aji_A 79 IAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG-ANPDAKDHYDATAMHRAAAKGNLKMVHI 157 (231)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred HHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCcHHHHHHHcCCHHHHHH
Confidence 999999999999999999 4 4688999999999999999999999987 9999999999999999999999999999
Q ss_pred HHhCCCCCCccCCCCCcHHHHHHHcCCcccHHHHHhcCCccc
Q 009554 350 LLTKGACASDLTLDGRSAVSICRRLTRPKDYQAKTEQGKETN 391 (532)
Q Consensus 350 LL~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~~G~~~~ 391 (532)
|+++|++++.+|..|+||||+|+..++...++.+.+.|.+++
T Consensus 158 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~ 199 (231)
T 3aji_A 158 LLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIY 199 (231)
T ss_dssp HHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC
T ss_pred HHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCC
Confidence 999999999999999999999999999999999999988764
No 43
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.95 E-value=9.4e-28 Score=238.24 Aligned_cols=188 Identities=13% Similarity=0.142 Sum_probs=167.6
Q ss_pred CcHHHHHHHHHhCcHH----HHHcccccccccccCcchhhhcCCcchHHHHHHHHhhcCCCCCCCCccCCcccccCCcHH
Q 009554 197 DIIPILLAAFHCQLSQ----LLAQCVDRIVRSDLDTISIEKELPTEVAEEIRMLRLKSFPDDENTAVEVDPLREKRIKRI 272 (532)
Q Consensus 197 n~~t~L~~A~~~~~~~----Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~i~~lL~~~~~~~~~~~~~in~~d~~g~t~L 272 (532)
++.++|+.|+..|+.+ |++.|++++..+..|.||||.|+..+. .+++++|+. .|+ ++|..|..|+|||
T Consensus 39 ~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~-~~~v~~Ll~--~ga-----~~~~~~~~g~tpL 110 (299)
T 1s70_B 39 DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDN-VDMVKFLVE--NGA-----NINQPDNEGWIPL 110 (299)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTC-HHHHHHHHH--TTC-----CTTCCCTTSCCHH
T ss_pred CCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCC-HHHHHHHHH--CCC-----CCCCCCCCCCcHH
Confidence 4589999999999844 889999999999999999999999998 667777743 333 5899999999999
Q ss_pred HHHhcCCCHHHHHHHHhcC-C---CCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCc-----------------------
Q 009554 273 HKALDSDDVELVRLLLSES-E---ITLDEANALHYAAAYCDPKVLSEVLSLGLADVN----------------------- 325 (532)
Q Consensus 273 h~A~~~g~~~~v~~Ll~~g-~---in~~g~t~Lh~A~~~g~~~~v~~LL~~~~advn----------------------- 325 (532)
|+|+..|+.+++++|+++| + .|..|.||||+|+..|+.++++.++...+++++
T Consensus 111 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 190 (299)
T 1s70_B 111 HAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHI 190 (299)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCc
Confidence 9999999999999999999 4 468899999999999999999988876666654
Q ss_pred ---CCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCCcccHHHHHhcCCcccc
Q 009554 326 ---LRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDLTLDGRSAVSICRRLTRPKDYQAKTEQGKETNK 392 (532)
Q Consensus 326 ---~~d~~G~TpLh~Aa~~~~~~iv~~LL~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~~G~~~~~ 392 (532)
..+..|+||||+|+.+|+.+++++|+++|++++.+|..|+||||+|+..|+...++.+.+.|.++..
T Consensus 191 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~ 260 (299)
T 1s70_B 191 NDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEA 260 (299)
T ss_dssp CCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred chhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCC
Confidence 3678899999999999999999999999999999999999999999999999999999999987653
No 44
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.95 E-value=7.5e-28 Score=234.24 Aligned_cols=198 Identities=18% Similarity=0.137 Sum_probs=157.2
Q ss_pred HHHHHHHHHhhCcHH----HHHHHHHcCCCcccccCC--CCcHHHHHHHH---HhCc----HHHHHcccccccccccCcc
Q 009554 163 AVEMMYASSIFELPE----LVSLFQRRLLNFVGKAVA--EDIIPILLAAF---HCQL----SQLLAQCVDRIVRSDLDTI 229 (532)
Q Consensus 163 ~~~~L~~A~~~~~~~----lv~~ll~~~~~i~~~~~~--~n~~t~L~~A~---~~~~----~~Ll~~~~~~~~~~~~~~t 229 (532)
..++|+.|+..|..+ +++++++.+.+++..+.. .+|.||||+|+ ..|+ +.|++.|++....
T Consensus 5 ~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~------ 78 (260)
T 3jxi_A 5 NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNM------ 78 (260)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCH------
T ss_pred hHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccch------
Confidence 367888888888777 455555577777765432 44578888887 4454 2355555443221
Q ss_pred hhhhcCCcchHHHHHHHHhhcCCCCCCCCccCCcccccCCcHHHHHhcCCCHHHHHHHHhcC-CCC--------------
Q 009554 230 SIEKELPTEVAEEIRMLRLKSFPDDENTAVEVDPLREKRIKRIHKALDSDDVELVRLLLSES-EIT-------------- 294 (532)
Q Consensus 230 ~L~~a~~~~~~~~i~~lL~~~~~~~~~~~~~in~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~in-------------- 294 (532)
..++. ..++..|..|+||||+|+..|+.++|++|++.| ++|
T Consensus 79 --------------~~~~~----------~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~ 134 (260)
T 3jxi_A 79 --------------REFIN----------SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEG 134 (260)
T ss_dssp --------------HHHHT----------CCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCC
T ss_pred --------------Hhhhc----------ccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCccccc
Confidence 11120 125666789999999999999999999999999 544
Q ss_pred ---CCCchHHHHHHHcCCHHHHHHHHHc--CCCCCcCCCCCCChHHHHHHHcCC---------HHHHHHHHhCCCCC---
Q 009554 295 ---LDEANALHYAAAYCDPKVLSEVLSL--GLADVNLRSSRGYTVLHIGAMRKE---------PSVIVSLLTKGACA--- 357 (532)
Q Consensus 295 ---~~g~t~Lh~A~~~g~~~~v~~LL~~--~~advn~~d~~G~TpLh~Aa~~~~---------~~iv~~LL~~gad~--- 357 (532)
..|+||||+|+..|+.+++++||.. .|+++|.+|..|+||||+|+..++ .+++++|+++|+++
T Consensus 135 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~ 214 (260)
T 3jxi_A 135 GYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPD 214 (260)
T ss_dssp CSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred ccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccc
Confidence 3699999999999999999999993 349999999999999999999888 79999999999999
Q ss_pred ----CccCCCCCcHHHHHHHcCCcccHHHHHhcCCcc
Q 009554 358 ----SDLTLDGRSAVSICRRLTRPKDYQAKTEQGKET 390 (532)
Q Consensus 358 ----~~~d~~G~TpL~~A~~~~~~~~~~~~~~~G~~~ 390 (532)
+.+|..|+||||+|++.|+...++.+.+.|..+
T Consensus 215 ~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~ 251 (260)
T 3jxi_A 215 TNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIAD 251 (260)
T ss_dssp CCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCc
Confidence 779999999999999999999999999887653
No 45
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.95 E-value=3.1e-28 Score=245.85 Aligned_cols=191 Identities=15% Similarity=0.044 Sum_probs=156.5
Q ss_pred HHHHHHHHhhCcHHHHHHHHHcCCCccc-ccCCCCcHHHHHHHHHhCcHH----HHHcccccccccccCcchhhhcCCcc
Q 009554 164 VEMMYASSIFELPELVSLFQRRLLNFVG-KAVAEDIIPILLAAFHCQLSQ----LLAQCVDRIVRSDLDTISIEKELPTE 238 (532)
Q Consensus 164 ~~~L~~A~~~~~~~lv~~ll~~~~~i~~-~~~~~n~~t~L~~A~~~~~~~----Ll~~~~~~~~~~~~~~t~L~~a~~~~ 238 (532)
...+++|...++.++++++++.+++++. +|..+ .||||+|+..|+.+ |+++|++++.++..|.||||.|+..+
T Consensus 98 ~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g--~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g 175 (327)
T 1sw6_A 98 QQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHG--NTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSV 175 (327)
T ss_dssp ------CHHHHHHHHHHHCTTSCCCSCSCCSTTC--CCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSS
T ss_pred cchhHHHHHhhHHHHHHHHHhcCCCcccccCCCC--CcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhc
Confidence 4566888888899999999999999998 75555 99999999999844 89999999999999999999999864
Q ss_pred h------HHHHHHHHhhcCCCCCCCCccCCcccccCCcHHHHHhc----CCCHHHHHHHHhc------------------
Q 009554 239 V------AEEIRMLRLKSFPDDENTAVEVDPLREKRIKRIHKALD----SDDVELVRLLLSE------------------ 290 (532)
Q Consensus 239 ~------~~~i~~lL~~~~~~~~~~~~~in~~d~~g~t~Lh~A~~----~g~~~~v~~Ll~~------------------ 290 (532)
. +..+++.+. .+++.+|..|+||||+|+. .|+.+++++|++.
T Consensus 176 ~~~~~~~~~~ll~~~~----------~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~ 245 (327)
T 1sw6_A 176 NNYDSGTFEALLDYLY----------PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTN 245 (327)
T ss_dssp HHHHTTCHHHHHHHHG----------GGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC--
T ss_pred ccccHHHHHHHHHhhh----------ccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhh
Confidence 3 344444441 2488999999999999999 9999999999987
Q ss_pred --C-C---CCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCC
Q 009554 291 --S-E---ITLDEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDLTLDG 364 (532)
Q Consensus 291 --g-~---in~~g~t~Lh~A~~~g~~~~v~~LL~~~~advn~~d~~G~TpLh~Aa~~~~~~iv~~LL~~gad~~~~d~~G 364 (532)
| + .+..|+||||+|+. +++|+.. ++|.+|..|+||||+|+.+|+.++|++||++|||++.+|.+|
T Consensus 246 ~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~---~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G 316 (327)
T 1sw6_A 246 EKESKPNDKNGERKDSILENLD------LKWIIAN---MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSG 316 (327)
T ss_dssp --------------CHHHHHCS------HHHHHHH---TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTS
T ss_pred cccCCcccccccCCChhHHHHH------HHHHHHh---CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCC
Confidence 5 3 35889999999985 8888877 599999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHcC
Q 009554 365 RSAVSICRRLT 375 (532)
Q Consensus 365 ~TpL~~A~~~~ 375 (532)
+||||+|++.|
T Consensus 317 ~TpL~~A~~~g 327 (327)
T 1sw6_A 317 LRPVDFGAGLE 327 (327)
T ss_dssp CCGGGGTCC--
T ss_pred CCHHHHHHhcC
Confidence 99999998754
No 46
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.95 E-value=6.2e-28 Score=236.79 Aligned_cols=127 Identities=20% Similarity=0.162 Sum_probs=116.9
Q ss_pred cccccCCcHHHHHhcCCCHHHHHHHHhcC-CCC---C--------------CCchHHHHHHHcCCHHHHHHHHHc--CCC
Q 009554 263 PLREKRIKRIHKALDSDDVELVRLLLSES-EIT---L--------------DEANALHYAAAYCDPKVLSEVLSL--GLA 322 (532)
Q Consensus 263 ~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~in---~--------------~g~t~Lh~A~~~g~~~~v~~LL~~--~~a 322 (532)
..|..|+||||+|+..|+.++|++|++.| +++ . .|+||||+|+..|+.+++++||+. .|+
T Consensus 96 ~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga 175 (273)
T 2pnn_A 96 DSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPA 175 (273)
T ss_dssp STTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCC
T ss_pred cccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCC
Confidence 35778999999999999999999999999 554 3 699999999999999999999993 349
Q ss_pred CCcCCCCCCChHHHHHHHcCC---------HHHHHHHHhCCCCCC-------ccCCCCCcHHHHHHHcCCcccHHHHHhc
Q 009554 323 DVNLRSSRGYTVLHIGAMRKE---------PSVIVSLLTKGACAS-------DLTLDGRSAVSICRRLTRPKDYQAKTEQ 386 (532)
Q Consensus 323 dvn~~d~~G~TpLh~Aa~~~~---------~~iv~~LL~~gad~~-------~~d~~G~TpL~~A~~~~~~~~~~~~~~~ 386 (532)
++|.+|..|+||||+|+..|+ .+++++|+++|++++ .+|..|+||||+|+..|+...++.+.+.
T Consensus 176 d~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ 255 (273)
T 2pnn_A 176 DISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQR 255 (273)
T ss_dssp CTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred CceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHC
Confidence 999999999999999999998 899999999999997 4899999999999999999999999998
Q ss_pred CCc
Q 009554 387 GKE 389 (532)
Q Consensus 387 G~~ 389 (532)
|+.
T Consensus 256 ga~ 258 (273)
T 2pnn_A 256 EIH 258 (273)
T ss_dssp HTC
T ss_pred CCC
Confidence 873
No 47
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.94 E-value=2.7e-28 Score=233.91 Aligned_cols=206 Identities=16% Similarity=0.073 Sum_probs=172.5
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHcCC----CcccccCCCCcHHHHHHHHHhCcHH----HHHcccccccccccCcchhhhc
Q 009554 163 AVEMMYASSIFELPELVSLFQRRLL----NFVGKAVAEDIIPILLAAFHCQLSQ----LLAQCVDRIVRSDLDTISIEKE 234 (532)
Q Consensus 163 ~~~~L~~A~~~~~~~lv~~ll~~~~----~i~~~~~~~n~~t~L~~A~~~~~~~----Ll~~~~~~~~~~~~~~t~L~~a 234 (532)
..++||+|+..|..++++++++.+. +++.++.. +.||||+|+..+..+ |+++|++++.++..|.||||.|
T Consensus 8 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 85 (236)
T 1ikn_D 8 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNL--QQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLA 85 (236)
T ss_dssp CCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTT--CCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHH
T ss_pred CCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence 3789999999999999998887765 56776444 599999999999865 6678899999999999999999
Q ss_pred CCcchHHHHHHHHhhcCCCCCCCCccCCcccccCCcHHHHHhcCCCHHHHHHHHhcC-CCC---C-CCchHHHHHHHcCC
Q 009554 235 LPTEVAEEIRMLRLKSFPDDENTAVEVDPLREKRIKRIHKALDSDDVELVRLLLSES-EIT---L-DEANALHYAAAYCD 309 (532)
Q Consensus 235 ~~~~~~~~i~~lL~~~~~~~~~~~~~in~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~in---~-~g~t~Lh~A~~~g~ 309 (532)
+..+. .+++++|....... .....++..+..|+||||+|+..|+.+++++|++.| +++ . .|+||||+|+..|+
T Consensus 86 ~~~~~-~~~v~~Ll~~~~~~-~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~ 163 (236)
T 1ikn_D 86 CEQGC-LASVGVLTQSCTTP-HLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQN 163 (236)
T ss_dssp HHHTC-HHHHHHHHHSTTTT-SSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred HHcCC-HHHHHHHHhcccch-hHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCC
Confidence 99998 56666664332110 012236778889999999999999999999999999 543 4 89999999999999
Q ss_pred HHHHHHHHHcCCCCCcCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCC--ccCCCCCcHHHHHHH
Q 009554 310 PKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACAS--DLTLDGRSAVSICRR 373 (532)
Q Consensus 310 ~~~v~~LL~~~~advn~~d~~G~TpLh~Aa~~~~~~iv~~LL~~gad~~--~~d~~G~TpL~~A~~ 373 (532)
.+++++||..| ++++.+|..|+||||+|+.+|+.+++++|+++|+++. ..+..|.||.+.+..
T Consensus 164 ~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~ 228 (236)
T 1ikn_D 164 PDLVSLLLKCG-ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESE 228 (236)
T ss_dssp HHHHHHHHTTT-CCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC--
T ss_pred HHHHHHHHHcC-CCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhcc
Confidence 99999999986 9999999999999999999999999999999999876 888899998776544
No 48
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.94 E-value=9.4e-27 Score=222.34 Aligned_cols=188 Identities=11% Similarity=0.006 Sum_probs=159.1
Q ss_pred HHHHHHHHhhCcHHHHHHHHHc-CCCcccccCCCCcHHHHHHHHHhCcHH----HHHccccc-----ccccccCcchhhh
Q 009554 164 VEMMYASSIFELPELVSLFQRR-LLNFVGKAVAEDIIPILLAAFHCQLSQ----LLAQCVDR-----IVRSDLDTISIEK 233 (532)
Q Consensus 164 ~~~L~~A~~~~~~~lv~~ll~~-~~~i~~~~~~~n~~t~L~~A~~~~~~~----Ll~~~~~~-----~~~~~~~~t~L~~ 233 (532)
.++||.|+..|..++++++++. +.+++.+|.. |.||||+|+..|+.+ |++.+.++ +.++..|.||||.
T Consensus 4 ~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~ 81 (232)
T 2rfa_A 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAM--GETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI 81 (232)
T ss_dssp TCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTT--SCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCC--CCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence 6899999999999999999987 9999988544 499999999999854 88888887 5667789999999
Q ss_pred cCCcchHHHHHHHHhhcCCCCCCCCccCCccc-------------ccCCcHHHHHhcCCCHHHHHHHHhcC-C---CCCC
Q 009554 234 ELPTEVAEEIRMLRLKSFPDDENTAVEVDPLR-------------EKRIKRIHKALDSDDVELVRLLLSES-E---ITLD 296 (532)
Q Consensus 234 a~~~~~~~~i~~lL~~~~~~~~~~~~~in~~d-------------~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~---in~~ 296 (532)
|+..+. .+++++|... |+ +++..+ ..|+||||+|+..|+.+++++|+++| + .|..
T Consensus 82 A~~~~~-~~~v~~Ll~~--g~-----~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~ 153 (232)
T 2rfa_A 82 AVINQN-VNLVRALLAR--GA-----SVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSL 153 (232)
T ss_dssp HHHTTC-HHHHHHHHHT--TC-----CTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT
T ss_pred HHHcCC-HHHHHHHHhC--CC-----CCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC
Confidence 999998 6677777433 33 344444 47999999999999999999999999 4 4688
Q ss_pred CchHHHHHHHcCCHHHH----HHHHHcCCCCC------cCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCC
Q 009554 297 EANALHYAAAYCDPKVL----SEVLSLGLADV------NLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDLTL 362 (532)
Q Consensus 297 g~t~Lh~A~~~g~~~~v----~~LL~~~~adv------n~~d~~G~TpLh~Aa~~~~~~iv~~LL~~gad~~~~d~ 362 (532)
|+||||+|+..|+.+++ +.|+..+ +++ +.+|..|+||||+|+.+|+.+++++|+++|++......
T Consensus 154 g~t~L~~A~~~~~~~~~~~i~~~Ll~~g-~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~~~~~~~ 228 (232)
T 2rfa_A 154 GNTVLHILILQPNKTFACQMYNLLLSYD-GGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAAAHH 228 (232)
T ss_dssp SCCHHHHHHTCSCHHHHHHHHHHHHHTT-CSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHC-----
T ss_pred CCCHHHHHHHcCChHHHHHHHHHHHhcC-CchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCccchhhhc
Confidence 99999999999999988 8888887 887 68999999999999999999999999999987765443
No 49
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.94 E-value=2.3e-26 Score=214.51 Aligned_cols=182 Identities=14% Similarity=0.086 Sum_probs=161.9
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHcCC-CcccccCCCCcHHHHHHHHHhCcHH----HHHcccccccccccCcchhhhcCCc
Q 009554 163 AVEMMYASSIFELPELVSLFQRRLL-NFVGKAVAEDIIPILLAAFHCQLSQ----LLAQCVDRIVRSDLDTISIEKELPT 237 (532)
Q Consensus 163 ~~~~L~~A~~~~~~~lv~~ll~~~~-~i~~~~~~~n~~t~L~~A~~~~~~~----Ll~~~~~~~~~~~~~~t~L~~a~~~ 237 (532)
..++|+.|+..+..+.++.++..+. +++.++.. +.||||+|+..++.+ |+++|++++.++..|.||||.|+..
T Consensus 5 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 82 (201)
T 3hra_A 5 EVGALLEAANQRDTKKVKEILQDTTYQVDEVDTE--GNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ 82 (201)
T ss_dssp CTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTT--SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred cccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence 3789999999999999999888776 88887544 499999999999844 8899999999999999999999999
Q ss_pred chHHHHHHHHhhcCCCCCCCCccCCcccccCCcHHHHHhcCCCHHHHHHHHhcC--C---CCCCCchHHHHHHHcCC---
Q 009554 238 EVAEEIRMLRLKSFPDDENTAVEVDPLREKRIKRIHKALDSDDVELVRLLLSES--E---ITLDEANALHYAAAYCD--- 309 (532)
Q Consensus 238 ~~~~~i~~lL~~~~~~~~~~~~~in~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g--~---in~~g~t~Lh~A~~~g~--- 309 (532)
+. .+++++|... .+ .+++..|..|.||||+|+..|+.+++++|++.| + .|..|+||||+|+..++
T Consensus 83 ~~-~~~~~~Ll~~-~~-----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~ 155 (201)
T 3hra_A 83 GR-TEILAYMLKH-AT-----PDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQ 155 (201)
T ss_dssp TC-HHHHHHHHHH-SC-----CCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSH
T ss_pred CC-HHHHHHHHhc-cC-----cccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchh
Confidence 98 6677777434 22 358889999999999999999999999999998 3 45789999999999998
Q ss_pred --HHHHHHHHHcCCCCCcCCCCCCChHHHHHHHcCCHHHHHHHHhCC
Q 009554 310 --PKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKG 354 (532)
Q Consensus 310 --~~~v~~LL~~~~advn~~d~~G~TpLh~Aa~~~~~~iv~~LL~~g 354 (532)
.++++.|++.| ++++.+|..|+||||+|+.+|+.+++++|+++|
T Consensus 156 ~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 156 LYQDIVKLLMENG-ADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp HHHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred hHHHHHHHHHHCC-CCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 99999999987 999999999999999999999999999999987
No 50
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.94 E-value=7.8e-27 Score=216.52 Aligned_cols=159 Identities=18% Similarity=0.158 Sum_probs=137.9
Q ss_pred cccccccCcchhhhcCCcchHHHHHHHHhhcCCCCCCCCccCCcccccCCcHHHHHhcCCCHHHHHHHHhcC-C---CCC
Q 009554 220 RIVRSDLDTISIEKELPTEVAEEIRMLRLKSFPDDENTAVEVDPLREKRIKRIHKALDSDDVELVRLLLSES-E---ITL 295 (532)
Q Consensus 220 ~~~~~~~~~t~L~~a~~~~~~~~i~~lL~~~~~~~~~~~~~in~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~---in~ 295 (532)
++.++..|.||||.|+..+. .+++++|... + .+++..|..|+||||+|+..|+.+++++|++.| + .|.
T Consensus 28 ~n~~d~~g~t~L~~A~~~g~-~~~v~~Ll~~--~-----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~ 99 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACMLGM-ENAIDKLVEN--F-----DKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDF 99 (192)
T ss_dssp HTCCCTTCCCHHHHHHHHTC-GGGHHHHHHH--H-----CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT
T ss_pred HhCcCCCCCCHHHHHHHcCC-HHHHHHHHHh--c-----cccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCC
Confidence 34566667777777776666 3444444322 2 248888999999999999999999999999999 4 457
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcC
Q 009554 296 DEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDLTLDGRSAVSICRRLT 375 (532)
Q Consensus 296 ~g~t~Lh~A~~~g~~~~v~~LL~~~~advn~~d~~G~TpLh~Aa~~~~~~iv~~LL~~gad~~~~d~~G~TpL~~A~~~~ 375 (532)
.|.||||+|+..|+.+++++|+..+ ++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|
T Consensus 100 ~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~ 178 (192)
T 2rfm_A 100 SGKTPLMWSIIFGYSEMSYFLLEHG-ANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFG 178 (192)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHHTT-CCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTT
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhC
Confidence 8999999999999999999999987 999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHhcC
Q 009554 376 RPKDYQAKTEQG 387 (532)
Q Consensus 376 ~~~~~~~~~~~G 387 (532)
+...++.+.+.|
T Consensus 179 ~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 179 RQEVIKIFTEVR 190 (192)
T ss_dssp CHHHHHHHHHHH
T ss_pred cHHHHHHHHhcc
Confidence 998888887765
No 51
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.94 E-value=5.1e-27 Score=231.13 Aligned_cols=180 Identities=17% Similarity=0.092 Sum_probs=152.8
Q ss_pred HHHHHHHHhCcHH----HHHcccc--cccccccCcchhhhcCCcchHHHHHHHHhhcCCCCCCCCccCCcccccCCcHHH
Q 009554 200 PILLAAFHCQLSQ----LLAQCVD--RIVRSDLDTISIEKELPTEVAEEIRMLRLKSFPDDENTAVEVDPLREKRIKRIH 273 (532)
Q Consensus 200 t~L~~A~~~~~~~----Ll~~~~~--~~~~~~~~~t~L~~a~~~~~~~~i~~lL~~~~~~~~~~~~~in~~d~~g~t~Lh 273 (532)
+++|.|+..+... +++.+.+ ++.+|..|.||||.|+..+. .+++++|+..+. .++|..|..|+||||
T Consensus 78 ~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~-~~~v~~Ll~~g~------~~~~~~~~~g~tpL~ 150 (276)
T 4hbd_A 78 SDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHAN-FPVVQQLLDSGV------CKVDKQNRAGYSPIM 150 (276)
T ss_dssp TTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTC-HHHHHHHHHTSC------CCTTCCCTTSCCHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCC-HHHHHHHHHCCC------CcCCCCCCCCCCHHH
Confidence 3455566555533 4444444 77888899999999998888 566666643322 258899999999999
Q ss_pred HHh-----cCCCHHHHHHHHhcCC----CCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCChHHHHHHHcCCH
Q 009554 274 KAL-----DSDDVELVRLLLSESE----ITLDEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEP 344 (532)
Q Consensus 274 ~A~-----~~g~~~~v~~Ll~~g~----in~~g~t~Lh~A~~~g~~~~v~~LL~~~~advn~~d~~G~TpLh~Aa~~~~~ 344 (532)
+|+ ..++.+++++|++.|. .+..|+||||+|+..|+.++++.||..| +|+|.+|..|+||||+|+.+|+.
T Consensus 151 ~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~g-ad~n~~d~~G~TpLh~A~~~g~~ 229 (276)
T 4hbd_A 151 LTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACE-ADVNVQDDDGSTALMCACEHGHK 229 (276)
T ss_dssp HGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCH
T ss_pred HHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCC-CCCCCCCCCCCCHHHHHHHCCCH
Confidence 999 6688999999999992 3567999999999999999999999997 99999999999999999999999
Q ss_pred HHHHHHHh-CCCCCCccCCCCCcHHHHHHHcCCcccHHHHHhcC
Q 009554 345 SVIVSLLT-KGACASDLTLDGRSAVSICRRLTRPKDYQAKTEQG 387 (532)
Q Consensus 345 ~iv~~LL~-~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~~G 387 (532)
+++++|++ +|++++.+|.+|+||||+|+..|+...++.+.+.+
T Consensus 230 ~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 230 EIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp HHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred HHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 99999999 89999999999999999999999999998888754
No 52
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.94 E-value=2.9e-26 Score=207.65 Aligned_cols=155 Identities=17% Similarity=0.155 Sum_probs=137.5
Q ss_pred cCcchhhhcCCcchHHHHHHHHhhcCCCCCCCCccCCcccccCCcHHHHHhcCCCHHHHHHHHhcC-C---CCCCCchHH
Q 009554 226 LDTISIEKELPTEVAEEIRMLRLKSFPDDENTAVEVDPLREKRIKRIHKALDSDDVELVRLLLSES-E---ITLDEANAL 301 (532)
Q Consensus 226 ~~~t~L~~a~~~~~~~~i~~lL~~~~~~~~~~~~~in~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~---in~~g~t~L 301 (532)
.|.|+||.|+..+.. ++++.|... + .++|..|..|+||||+|+..|+.+++++|++.| + .|..|.|||
T Consensus 2 ~~~t~L~~A~~~g~~-~~v~~ll~~--~-----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L 73 (167)
T 3v31_A 2 ANSLSVHQLAAQGEM-LYLATRIEQ--E-----NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESAL 73 (167)
T ss_dssp TTCCCHHHHHHTTCH-HHHHHHHHH--S-----SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred CCcchHHHHHHCCCH-HHHHHHHHc--C-----CCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHH
Confidence 467888888888884 444444333 2 248899999999999999999999999999999 4 458899999
Q ss_pred HHHHHcCCHHHHHHHHHcCCCCCcCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCCcccHH
Q 009554 302 HYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDLTLDGRSAVSICRRLTRPKDYQ 381 (532)
Q Consensus 302 h~A~~~g~~~~v~~LL~~~~advn~~d~~G~TpLh~Aa~~~~~~iv~~LL~~gad~~~~d~~G~TpL~~A~~~~~~~~~~ 381 (532)
|+|+..|+.+++++|+..+ ++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+...++
T Consensus 74 ~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~ 152 (167)
T 3v31_A 74 SLACSKGYTDIVKMLLDCG-VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQ 152 (167)
T ss_dssp HHHHHHTCHHHHHHHHHHT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHCC-CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHH
Confidence 9999999999999999997 999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHhcCCc
Q 009554 382 AKTEQGKE 389 (532)
Q Consensus 382 ~~~~~G~~ 389 (532)
.+.+.+..
T Consensus 153 ~L~~~~~~ 160 (167)
T 3v31_A 153 VIESHLLK 160 (167)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88776543
No 53
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.93 E-value=3.4e-26 Score=208.19 Aligned_cols=157 Identities=18% Similarity=0.171 Sum_probs=137.3
Q ss_pred CcchhhhcCCcchHHHHHHHHhhcCCCCCCCCccCCcccccCCcHHHHHhcCCCHHHHHHHHhcC-C---CCCCCchHHH
Q 009554 227 DTISIEKELPTEVAEEIRMLRLKSFPDDENTAVEVDPLREKRIKRIHKALDSDDVELVRLLLSES-E---ITLDEANALH 302 (532)
Q Consensus 227 ~~t~L~~a~~~~~~~~i~~lL~~~~~~~~~~~~~in~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~---in~~g~t~Lh 302 (532)
+.++||.|+..+..+.+..++ .. + ...++..|..|+||||+|+..|+.+++++|++.| + .|..|+||||
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll-~~--~----~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 74 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHL-RK--G----DNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALS 74 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHH-TT--C----SGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHH
T ss_pred chhhHHHHHHcCCHHHHHHHH-Hc--C----cccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHH
Confidence 457888888888855555555 23 1 1237888999999999999999999999999999 4 3588999999
Q ss_pred HHHHcCCHHHHHHHHHcCCCCCcCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCCcccHHH
Q 009554 303 YAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDLTLDGRSAVSICRRLTRPKDYQA 382 (532)
Q Consensus 303 ~A~~~g~~~~v~~LL~~~~advn~~d~~G~TpLh~Aa~~~~~~iv~~LL~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~ 382 (532)
+|+..|+.+++++|+..+ ++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++...++.
T Consensus 75 ~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~ 153 (172)
T 3v30_A 75 LASTGGYTDIVGLLLERD-VDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQV 153 (172)
T ss_dssp HHHHTTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred HHHHCCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHH
Confidence 999999999999999886 9999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHhcCCccc
Q 009554 383 KTEQGKETN 391 (532)
Q Consensus 383 ~~~~G~~~~ 391 (532)
+.+.|....
T Consensus 154 L~~~~~~~~ 162 (172)
T 3v30_A 154 IENHILKLF 162 (172)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHHh
Confidence 888765443
No 54
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.93 E-value=8.7e-26 Score=205.16 Aligned_cols=153 Identities=19% Similarity=0.198 Sum_probs=134.4
Q ss_pred cCcchhhhcCCcchHHHHHHHHhhcCCCCCCCCccCCcccccCCcHHHHHhcCCCHHHHHHHHhcC-C---CCCCCchHH
Q 009554 226 LDTISIEKELPTEVAEEIRMLRLKSFPDDENTAVEVDPLREKRIKRIHKALDSDDVELVRLLLSES-E---ITLDEANAL 301 (532)
Q Consensus 226 ~~~t~L~~a~~~~~~~~i~~lL~~~~~~~~~~~~~in~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~---in~~g~t~L 301 (532)
.+.++++.|+..+. .+++++|.. .+ .++|.+|..|.||||+|+..|+.+++++|++.| + .|..|.|||
T Consensus 13 ~~~~~l~~A~~~g~-~~~v~~Ll~--~g-----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L 84 (169)
T 2y1l_E 13 DLGKKLLEAARAGR-DDEVRILMA--NG-----ADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPL 84 (169)
T ss_dssp CHHHHHHHHHHHTC-HHHHHHHHH--TT-----CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred cccchHHHHHHcCC-HHHHHHHHH--CC-----CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHH
Confidence 34566777777777 455555532 23 358889999999999999999999999999999 4 457899999
Q ss_pred HHHHHcCCHHHHHHHHHcCCCCCcCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCCcccHH
Q 009554 302 HYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDLTLDGRSAVSICRRLTRPKDYQ 381 (532)
Q Consensus 302 h~A~~~g~~~~v~~LL~~~~advn~~d~~G~TpLh~Aa~~~~~~iv~~LL~~gad~~~~d~~G~TpL~~A~~~~~~~~~~ 381 (532)
|+|+..|+.+++++|++.+ ++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++...++
T Consensus 85 ~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~ 163 (169)
T 2y1l_E 85 RLAALFGHLEIVEVLLKNG-ADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAE 163 (169)
T ss_dssp HHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHH
Confidence 9999999999999999987 999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHhcC
Q 009554 382 AKTEQG 387 (532)
Q Consensus 382 ~~~~~G 387 (532)
.+.+.|
T Consensus 164 ~L~~~G 169 (169)
T 2y1l_E 164 ILQKLN 169 (169)
T ss_dssp HHHTC-
T ss_pred HHHHcC
Confidence 887765
No 55
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.93 E-value=2.2e-26 Score=223.46 Aligned_cols=183 Identities=10% Similarity=0.065 Sum_probs=141.2
Q ss_pred cccccccCCCchh-----hhhHHHHHHHHHhh---CcHHHHHHHHHcCCCcccccCCCCcHHHHHHHHHhCcHHHHHccc
Q 009554 147 VDNICVHDACRPA-----INFAVEMMYASSIF---ELPELVSLFQRRLLNFVGKAVAEDIIPILLAAFHCQLSQLLAQCV 218 (532)
Q Consensus 147 vd~~~~h~a~~~~-----~~~~~~~L~~A~~~---~~~~lv~~ll~~~~~i~~~~~~~n~~t~L~~A~~~~~~~Ll~~~~ 218 (532)
++.+..+++..+. .....++||+|+.. +..+++++|++++.+++..+. ++. .
T Consensus 22 l~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~------------------~~~--~ 81 (256)
T 2etb_A 22 LEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKP------------------LVN--A 81 (256)
T ss_dssp HHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSC------------------GGG--C
T ss_pred HHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhh------------------hcc--c
Confidence 4455568888876 34458999999999 999999999999988664320 000 1
Q ss_pred ccccccccCcchhhhcCCcchHHHHHHHHhhcCCCCCCCCccCCccccc-------------CCcHHHHHhcCCCHHHHH
Q 009554 219 DRIVRSDLDTISIEKELPTEVAEEIRMLRLKSFPDDENTAVEVDPLREK-------------RIKRIHKALDSDDVELVR 285 (532)
Q Consensus 219 ~~~~~~~~~~t~L~~a~~~~~~~~i~~lL~~~~~~~~~~~~~in~~d~~-------------g~t~Lh~A~~~g~~~~v~ 285 (532)
.+..++..|.||||.|+..+. .+++++|+. .|+ ++|..+.. |+||||+|+..|+.++++
T Consensus 82 ~~~~~d~~g~t~L~~A~~~g~-~~~v~~Ll~--~ga-----~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~ 153 (256)
T 2etb_A 82 QCTDEFYQGHSALHIAIEKRS-LQCVKLLVE--NGA-----DVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVT 153 (256)
T ss_dssp CCCSTTTTTCCHHHHHHHTTC-HHHHHHHHH--TTC-----CTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHH
T ss_pred ccccccccCCCHHHHHHHcCC-HHHHHHHHH--cCC-----CCCcccccccccccccccccCCCCHHHHHHHcCCHHHHH
Confidence 122233445566666555555 455555532 232 36666654 999999999999999999
Q ss_pred HHHh---cC-C---CCCCCchHHHHHHH--cCCHH-------HHHHHHHcCCCCC-------cCCCCCCChHHHHHHHcC
Q 009554 286 LLLS---ES-E---ITLDEANALHYAAA--YCDPK-------VLSEVLSLGLADV-------NLRSSRGYTVLHIGAMRK 342 (532)
Q Consensus 286 ~Ll~---~g-~---in~~g~t~Lh~A~~--~g~~~-------~v~~LL~~~~adv-------n~~d~~G~TpLh~Aa~~~ 342 (532)
+|++ .| + .|..|+||||+|+. .++.+ +++.|+..| +++ +.+|..|+||||+|+..|
T Consensus 154 ~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~g-a~~~~~~~~~~~~d~~g~tpL~~A~~~g 232 (256)
T 2etb_A 154 YLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMG-ARLCPTVQLEEISNHQGLTPLKLAAKEG 232 (256)
T ss_dssp HHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH-HHHSTTCCGGGCCCTTSCCHHHHHHHTT
T ss_pred HHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcC-CCcccccccccccCCCCCCHHHHHHHhC
Confidence 9999 88 4 46899999999999 78888 999999997 999 999999999999999999
Q ss_pred CHHHHHHHHhCCCCCC
Q 009554 343 EPSVIVSLLTKGACAS 358 (532)
Q Consensus 343 ~~~iv~~LL~~gad~~ 358 (532)
+.+++++|+++|++..
T Consensus 233 ~~~~v~~Ll~~g~~~~ 248 (256)
T 2etb_A 233 KIEIFRHILQREFSGA 248 (256)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCCCCCC
Confidence 9999999999987654
No 56
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.93 E-value=1.1e-25 Score=202.52 Aligned_cols=153 Identities=19% Similarity=0.140 Sum_probs=133.8
Q ss_pred CcchhhhcCCcchHHHHHHHHhhcCCCCCCCCccCCcccccCCcHHHHHhcCCCHHHHHHHHhcC-CC---CCCCchHHH
Q 009554 227 DTISIEKELPTEVAEEIRMLRLKSFPDDENTAVEVDPLREKRIKRIHKALDSDDVELVRLLLSES-EI---TLDEANALH 302 (532)
Q Consensus 227 ~~t~L~~a~~~~~~~~i~~lL~~~~~~~~~~~~~in~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~i---n~~g~t~Lh 302 (532)
..++|+.|+..+. .++++.|. . .+ .++|..|..|+||||+|+. |+.+++++|++.| ++ |..|+||||
T Consensus 5 ~~~~L~~A~~~g~-~~~v~~Ll-~-~~-----~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 75 (162)
T 1ihb_A 5 WGNELASAAARGD-LEQLTSLL-Q-NN-----VNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIH 75 (162)
T ss_dssp CHHHHHHHHHHTC-HHHHHHHT-T-SC-----CCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred HhhHHHHHHHcCC-HHHHHHHH-h-CC-----CCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence 3466777776666 45555552 2 23 3588899999999999999 9999999999999 44 578999999
Q ss_pred HHHHcCCHHHHHHHHHcCCCCCcCCCCCCChHHHHHHHcCCHHHHHHHHhCCCC-CCccCCCCCcHHHHHHHcCCcccHH
Q 009554 303 YAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGAC-ASDLTLDGRSAVSICRRLTRPKDYQ 381 (532)
Q Consensus 303 ~A~~~g~~~~v~~LL~~~~advn~~d~~G~TpLh~Aa~~~~~~iv~~LL~~gad-~~~~d~~G~TpL~~A~~~~~~~~~~ 381 (532)
+|+..|+.+++++|++.+ ++++.+|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..++...++
T Consensus 76 ~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~ 154 (162)
T 1ihb_A 76 DAARAGFLDTLQTLLEFQ-ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVS 154 (162)
T ss_dssp HHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHH
Confidence 999999999999999987 99999999999999999999999999999999998 5999999999999999999999999
Q ss_pred HHHhcCCc
Q 009554 382 AKTEQGKE 389 (532)
Q Consensus 382 ~~~~~G~~ 389 (532)
.+.+.|++
T Consensus 155 ~Ll~~GAd 162 (162)
T 1ihb_A 155 LMQANGAG 162 (162)
T ss_dssp HHHHTC--
T ss_pred HHHHhCCC
Confidence 99998863
No 57
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.93 E-value=2.4e-26 Score=225.46 Aligned_cols=198 Identities=13% Similarity=0.112 Sum_probs=152.0
Q ss_pred HHHHHHHHHhhCcHHHHHHHHH----cCCCccccc--CCCCcHHHHHHHHHh---Cc----HHHHHccccc-------cc
Q 009554 163 AVEMMYASSIFELPELVSLFQR----RLLNFVGKA--VAEDIIPILLAAFHC---QL----SQLLAQCVDR-------IV 222 (532)
Q Consensus 163 ~~~~L~~A~~~~~~~lv~~ll~----~~~~i~~~~--~~~n~~t~L~~A~~~---~~----~~Ll~~~~~~-------~~ 222 (532)
..++|+.|+..|..++++.+++ .+.+++..+ ....+.||||+|+.+ ++ +.|++.|++. +.
T Consensus 13 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~ 92 (273)
T 2pnn_A 13 DRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNA 92 (273)
T ss_dssp CHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTC
T ss_pred cchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhc
Confidence 4899999999999987777665 555554321 134569999999986 65 4488887652 32
Q ss_pred ----ccccCcchhhhcCCcchHHHHHHHHhhcCCCCCCCCccCCcccc--------------cCCcHHHHHhcCCCHHHH
Q 009554 223 ----RSDLDTISIEKELPTEVAEEIRMLRLKSFPDDENTAVEVDPLRE--------------KRIKRIHKALDSDDVELV 284 (532)
Q Consensus 223 ----~~~~~~t~L~~a~~~~~~~~i~~lL~~~~~~~~~~~~~in~~d~--------------~g~t~Lh~A~~~g~~~~v 284 (532)
++..|.||||.|+..+. .+++++|+.. |+ ++|..+. .|+||||+|+..|+.+++
T Consensus 93 ~~~~~d~~g~tpL~~A~~~g~-~~~v~~Ll~~--ga-----~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v 164 (273)
T 2pnn_A 93 SYTDSYYKGQTALHIAIERRN-MTLVTLLVEN--GA-----DVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIV 164 (273)
T ss_dssp CCCSTTTTTCCHHHHHHHTTC-HHHHHHHHHT--TC-----CTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHH
T ss_pred ccccccCCCCCHHHHHHHcCC-HHHHHHHHHC--CC-----CcCccccccccccccccccccCCCCHHHHHHHcCCHHHH
Confidence 56689999999999998 6777777432 33 4777776 799999999999999999
Q ss_pred HHHHh---cC-C---CCCCCchHHHHHHHcCC---------HHHHHHHHHcCCCCCc-------CCCCCCChHHHHHHHc
Q 009554 285 RLLLS---ES-E---ITLDEANALHYAAAYCD---------PKVLSEVLSLGLADVN-------LRSSRGYTVLHIGAMR 341 (532)
Q Consensus 285 ~~Ll~---~g-~---in~~g~t~Lh~A~~~g~---------~~~v~~LL~~~~advn-------~~d~~G~TpLh~Aa~~ 341 (532)
++|++ .| + .|..|+||||+|+..|+ .++++.||..| +++| .+|..|+||||+|+.+
T Consensus 165 ~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~g-a~~n~~~~~~~~~d~~g~TpL~~A~~~ 243 (273)
T 2pnn_A 165 KFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILG-AKLHPTLKLEEITNRKGLTPLALAASS 243 (273)
T ss_dssp HHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH-HHHCTTCCGGGCCCTTSCCHHHHHHHT
T ss_pred HHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhh-hhcccccccccccCCCCCCHHHHHHHh
Confidence 99999 78 4 46889999999999998 78999999987 9997 4899999999999999
Q ss_pred CCHHHHHHHHhCCC-CCCccCCCCCcHHH
Q 009554 342 KEPSVIVSLLTKGA-CASDLTLDGRSAVS 369 (532)
Q Consensus 342 ~~~~iv~~LL~~ga-d~~~~d~~G~TpL~ 369 (532)
|+.+++++|+++|| |+......+.+|-+
T Consensus 244 g~~~iv~~Ll~~ga~dp~~~~~~~~~~~~ 272 (273)
T 2pnn_A 244 GKIGVLAYILQREIHEPECRHAAAHHHHH 272 (273)
T ss_dssp TCHHHHHHHHHHHTC--------------
T ss_pred ChHHHHHHHHHCCCCCchhhhhhhhhccC
Confidence 99999999999999 89888888777643
No 58
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.93 E-value=6.8e-26 Score=204.72 Aligned_cols=156 Identities=17% Similarity=0.168 Sum_probs=130.5
Q ss_pred cccCcchhhhcCCcchHHHHHHHHhhcCCCCCCCCccCCcccccCCcHHHHHhcCCCHHHHHHHHhcC-C---CCCCCch
Q 009554 224 SDLDTISIEKELPTEVAEEIRMLRLKSFPDDENTAVEVDPLREKRIKRIHKALDSDDVELVRLLLSES-E---ITLDEAN 299 (532)
Q Consensus 224 ~~~~~t~L~~a~~~~~~~~i~~lL~~~~~~~~~~~~~in~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~---in~~g~t 299 (532)
+..+.++|+.|+..+. .++++.|... .+ .+++..+..|+||||+|+..|+.+++++|++.| + .|..|+|
T Consensus 5 ~~~~~~~l~~A~~~g~-~~~v~~ll~~-~~-----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t 77 (165)
T 3twr_A 5 NSEADRQLLEAAKAGD-VETVKKLCTV-QS-----VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLV 77 (165)
T ss_dssp -CHHHHHHHHHHHHTC-HHHHHHHCCT-TT-----TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred cchhhHHHHHHHHhCC-HHHHHHHHHc-CC-----CCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCC
Confidence 3345666666666666 3444444222 11 246777889999999999999999999999999 4 4578999
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCCccc
Q 009554 300 ALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDLTLDGRSAVSICRRLTRPKD 379 (532)
Q Consensus 300 ~Lh~A~~~g~~~~v~~LL~~~~advn~~d~~G~TpLh~Aa~~~~~~iv~~LL~~gad~~~~d~~G~TpL~~A~~~~~~~~ 379 (532)
|||+|+..|+.+++++|++.+ ++++.+|..|+||||+|+.+|+.+++++|+++|++++.+|.+|+||||+|+. ++..+
T Consensus 78 ~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i 155 (165)
T 3twr_A 78 PLHNACSYGHYEVAELLVKHG-AVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDI 155 (165)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHH
T ss_pred HHHHHHHcCcHHHHHHHHhCC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHH
Confidence 999999999999999999987 9999999999999999999999999999999999999999999999999877 77788
Q ss_pred HHHHHhcCC
Q 009554 380 YQAKTEQGK 388 (532)
Q Consensus 380 ~~~~~~~G~ 388 (532)
++.+.+.|+
T Consensus 156 ~~~L~~~gA 164 (165)
T 3twr_A 156 QDLLRGDAA 164 (165)
T ss_dssp HHHHHTC--
T ss_pred HHHHhhccc
Confidence 888877664
No 59
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.93 E-value=9.5e-26 Score=206.84 Aligned_cols=159 Identities=18% Similarity=0.213 Sum_probs=138.5
Q ss_pred cCcchhhhcCCcchHHHHHHHHhhcCCCCCCCCccCCcccccCCcHHHHHhcCCCHHHHHHHHhcC-CC---CCCCchHH
Q 009554 226 LDTISIEKELPTEVAEEIRMLRLKSFPDDENTAVEVDPLREKRIKRIHKALDSDDVELVRLLLSES-EI---TLDEANAL 301 (532)
Q Consensus 226 ~~~t~L~~a~~~~~~~~i~~lL~~~~~~~~~~~~~in~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~i---n~~g~t~L 301 (532)
.+.++|+.|+..+....+..++ .. .+ .+++..|..|+||||+|+..|+.+++++|++.| ++ |..|+|||
T Consensus 4 ~~~~~l~~A~~~g~~~~v~~ll-~~-~~-----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L 76 (179)
T 3f6q_A 4 EFMDDIFTQCREGNAVAVRLWL-DN-TE-----NDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPL 76 (179)
T ss_dssp ---CCHHHHHHHTCHHHHHHHH-HC-TT-----SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHH-hc-Cc-----ccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence 4567888888888844444444 33 22 358889999999999999999999999999999 44 58899999
Q ss_pred HHHHHcCCHHHHHHHHHcCCCCCcCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCCcccHH
Q 009554 302 HYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDLTLDGRSAVSICRRLTRPKDYQ 381 (532)
Q Consensus 302 h~A~~~g~~~~v~~LL~~~~advn~~d~~G~TpLh~Aa~~~~~~iv~~LL~~gad~~~~d~~G~TpL~~A~~~~~~~~~~ 381 (532)
|+|+..|+.+++++|++.+ +++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++...++
T Consensus 77 ~~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~ 155 (179)
T 3f6q_A 77 HLAASHGHRDIVQKLLQYK-ADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRE 155 (179)
T ss_dssp HHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHH
Confidence 9999999999999999987 999999999999999999999999999999999999999999999999999988888888
Q ss_pred HHHhcCCcccc
Q 009554 382 AKTEQGKETNK 392 (532)
Q Consensus 382 ~~~~~G~~~~~ 392 (532)
.+.+.|+.++.
T Consensus 156 ~L~~~g~~~~~ 166 (179)
T 3f6q_A 156 RAEKMGQNLNR 166 (179)
T ss_dssp HHHHTTCCCSC
T ss_pred HHHHhhcCccc
Confidence 88888877653
No 60
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.93 E-value=3.4e-25 Score=211.66 Aligned_cols=187 Identities=14% Similarity=0.111 Sum_probs=164.3
Q ss_pred CCcHHHHHHHHHhCcHH----HHHcccccccccccCcchhhhcCCcchHHHHHHHHhhcCCCCCCCCccCCc-ccccCCc
Q 009554 196 EDIIPILLAAFHCQLSQ----LLAQCVDRIVRSDLDTISIEKELPTEVAEEIRMLRLKSFPDDENTAVEVDP-LREKRIK 270 (532)
Q Consensus 196 ~n~~t~L~~A~~~~~~~----Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~i~~lL~~~~~~~~~~~~~in~-~d~~g~t 270 (532)
..+.++|+.|+..|..+ |++.|++++.++..|.|+||.|+..+. .+++++|... +. +++. .+..|.|
T Consensus 7 ~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll~~--~~-----~~~~~~~~~~~t 78 (240)
T 3eu9_A 7 DYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNR-IDLVKYYISK--GA-----IVDQLGGDLNST 78 (240)
T ss_dssp CGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC-HHHHHHHHHT--TC-----CTTCCBTTTTBC
T ss_pred cccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCC-HHHHHHHHHc--CC-----cchhhcCCcCCC
Confidence 34589999999999844 889999999999999999999999998 6667777433 22 2443 3456999
Q ss_pred HHHHHhcCCCHHHHHHHHhcC-C---CCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCChHHHHHHHcCC-HH
Q 009554 271 RIHKALDSDDVELVRLLLSES-E---ITLDEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKE-PS 345 (532)
Q Consensus 271 ~Lh~A~~~g~~~~v~~Ll~~g-~---in~~g~t~Lh~A~~~g~~~~v~~LL~~~~advn~~d~~G~TpLh~Aa~~~~-~~ 345 (532)
|||+|+..|+.+++++|++.| + .|..|.||||+|+..|+.+++++|+..+ ++++.+|..|+||||+|+..++ .+
T Consensus 79 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~-~~~~~~~~~g~t~l~~a~~~~~~~~ 157 (240)
T 3eu9_A 79 PLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKG-QDVDMMDQNGMTPLMWAAYRTHSVD 157 (240)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHCCSST
T ss_pred hhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcC-CCccccCCCCCcHHHHHHHhCChHH
Confidence 999999999999999999999 4 4588999999999999999999999987 9999999999999999997766 89
Q ss_pred HHHHHHhCCCCCCccCC-CCCcHHHHHHHcCCcccHHHHHhcCCccc
Q 009554 346 VIVSLLTKGACASDLTL-DGRSAVSICRRLTRPKDYQAKTEQGKETN 391 (532)
Q Consensus 346 iv~~LL~~gad~~~~d~-~G~TpL~~A~~~~~~~~~~~~~~~G~~~~ 391 (532)
++++|++.|++++..+. .|.||||+|+..++...++.+.+.|..+.
T Consensus 158 ~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~ 204 (240)
T 3eu9_A 158 PTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVD 204 (240)
T ss_dssp THHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTT
T ss_pred HHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 99999999999999997 99999999999999999999999887654
No 61
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.93 E-value=1e-25 Score=197.06 Aligned_cols=128 Identities=17% Similarity=0.064 Sum_probs=121.5
Q ss_pred ccCCcccccCCcHHHHHhcCCCHHHHHHHHhcC-CC---CCCCchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCC-CCh
Q 009554 259 VEVDPLREKRIKRIHKALDSDDVELVRLLLSES-EI---TLDEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSR-GYT 333 (532)
Q Consensus 259 ~~in~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~i---n~~g~t~Lh~A~~~g~~~~v~~LL~~~~advn~~d~~-G~T 333 (532)
.++|..|..|.||||+|+..|+.+++++|++.| ++ |..|+||||+|+. |+.+++++|+..+ ++++.+|.. |+|
T Consensus 3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g-~~~~~~~~~~g~t 80 (136)
T 1d9s_A 3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHG-AEPNCADPATLTR 80 (136)
T ss_dssp CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHT-CCSSCCBTTTTBC
T ss_pred CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCC-CCCCCcCCCCCCC
Confidence 358999999999999999999999999999999 44 5889999999999 9999999999987 999999999 999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCCcccHHHHHhcCC
Q 009554 334 VLHIGAMRKEPSVIVSLLTKGACASDLTLDGRSAVSICRRLTRPKDYQAKTEQGK 388 (532)
Q Consensus 334 pLh~Aa~~~~~~iv~~LL~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~~G~ 388 (532)
|||+|+.+|+.+++++|+++|++++.+|..|+||||+|+..++...++.+.+.|+
T Consensus 81 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga 135 (136)
T 1d9s_A 81 PVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999999999988775
No 62
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.92 E-value=3.1e-25 Score=197.95 Aligned_cols=146 Identities=16% Similarity=0.122 Sum_probs=124.9
Q ss_pred cchhhhcCCcchHHHHHHHHhhcCCCCCCCCccCCcccccCCcHHHHHhcCCCHHHHHHHHhcC-C---CCCCCchHHHH
Q 009554 228 TISIEKELPTEVAEEIRMLRLKSFPDDENTAVEVDPLREKRIKRIHKALDSDDVELVRLLLSES-E---ITLDEANALHY 303 (532)
Q Consensus 228 ~t~L~~a~~~~~~~~i~~lL~~~~~~~~~~~~~in~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~---in~~g~t~Lh~ 303 (532)
.++|+.|+..+. .+++++|... ++ +++ .+..|.||||+|+..|+.+++++|++.| + .|..|+||||+
T Consensus 3 ~~~L~~A~~~g~-~~~v~~Ll~~--g~-----~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 73 (153)
T 1awc_B 3 GKKLLEAARAGQ-DDEVRILMAN--GA-----PFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHM 73 (153)
T ss_dssp HHHHHHHHHHTC-HHHHHHHHHH--TC-----CCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHH
T ss_pred cHHHHHHHHcCC-HHHHHHHHHc--CC-----CCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence 356666666666 3444444222 22 244 4788999999999999999999999999 4 45789999999
Q ss_pred HHHcCCHHHHHHHHHcCCCCCcCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCCcccHHHH
Q 009554 304 AAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDLTLDGRSAVSICRRLTRPKDYQAK 383 (532)
Q Consensus 304 A~~~g~~~~v~~LL~~~~advn~~d~~G~TpLh~Aa~~~~~~iv~~LL~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~ 383 (532)
|+..|+.+++++|+..+ ++++.+|..|+||||+|+.+|+.+++++|+++|++++.+|..|+||||+|+..|+...++.+
T Consensus 74 A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 74 AASEGHANIVEVLLKHG-ADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHHTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHcChHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 99999999999999986 99999999999999999999999999999999999999999999999999999888777654
No 63
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.92 E-value=2.2e-26 Score=232.29 Aligned_cols=226 Identities=12% Similarity=-0.035 Sum_probs=156.5
Q ss_pred cccccccCCCchhhhhH-HHHHHHHHhhCcHHHHHHHHHcCCCcccccCC------------CCc---HHHHHHHHHhCc
Q 009554 147 VDNICVHDACRPAINFA-VEMMYASSIFELPELVSLFQRRLLNFVGKAVA------------EDI---IPILLAAFHCQL 210 (532)
Q Consensus 147 vd~~~~h~a~~~~~~~~-~~~L~~A~~~~~~~lv~~ll~~~~~i~~~~~~------------~n~---~t~L~~A~~~~~ 210 (532)
++.++.+|+..+..+.. .++++ |..+++++|+++|++.+..... +.+ .+.+|+|+..+.
T Consensus 35 v~~ll~~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 109 (327)
T 1sw6_A 35 TSDFLSSPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLL 109 (327)
T ss_dssp CCSTTTSSCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC-------------------------------CHHHHH
T ss_pred HHHHhhCCcccccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhH
Confidence 56666777776665433 34433 8889999999999885441100 000 112344554444
Q ss_pred HH----HHHccccccc-ccccCcchhhhcCCcchHHHHHHHHhhcCCCCCCCCccCCcccccCCcHHHHHhcCCC---HH
Q 009554 211 SQ----LLAQCVDRIV-RSDLDTISIEKELPTEVAEEIRMLRLKSFPDDENTAVEVDPLREKRIKRIHKALDSDD---VE 282 (532)
Q Consensus 211 ~~----Ll~~~~~~~~-~~~~~~t~L~~a~~~~~~~~i~~lL~~~~~~~~~~~~~in~~d~~g~t~Lh~A~~~g~---~~ 282 (532)
.+ |++.|++++. ++..|.||||+|+..+. .+++++|+. +|+ ++|.+|..|+||||+|+..|+ .+
T Consensus 110 ~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~-~~~v~~Ll~--~Ga-----d~n~~d~~g~TpLh~A~~~g~~~~~~ 181 (327)
T 1sw6_A 110 QEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIAN-LELVKHLVK--HGS-----NRLYGDNMGESCLVKAVKSVNNYDSG 181 (327)
T ss_dssp HHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTC-HHHHHHHHH--TTC-----CTTBCCTTCCCHHHHHHHSSHHHHTT
T ss_pred HHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCC-HHHHHHHHH--cCC-----CCCCcCCCCCCHHHHHHHhcccccHH
Confidence 33 5567888888 88899999999998888 666676632 233 588889999999999999888 56
Q ss_pred HHHHHHhcC-----CCCCCCchHHHHHHH----cCCHHHHHHHHHcC-------------------CCCCcCCCCCCChH
Q 009554 283 LVRLLLSES-----EITLDEANALHYAAA----YCDPKVLSEVLSLG-------------------LADVNLRSSRGYTV 334 (532)
Q Consensus 283 ~v~~Ll~~g-----~in~~g~t~Lh~A~~----~g~~~~v~~LL~~~-------------------~advn~~d~~G~Tp 334 (532)
+++.|++.+ ..|..|+||||+|+. .|+.++++.|++.+ |++++.+|..|+||
T Consensus 182 ~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~ 261 (327)
T 1sw6_A 182 TFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDS 261 (327)
T ss_dssp CHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CH
T ss_pred HHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCCh
Confidence 666666665 246889999999998 88999999998773 58999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCCcccHHHHHhcCCcccch
Q 009554 335 LHIGAMRKEPSVIVSLLTKGACASDLTLDGRSAVSICRRLTRPKDYQAKTEQGKETNKD 393 (532)
Q Consensus 335 Lh~Aa~~~~~~iv~~LL~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~~G~~~~~~ 393 (532)
||+|+. +++|+++ ++|.+|.+|+||||+|++.|+...++.+.+.|.+++..
T Consensus 262 L~~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~ 312 (327)
T 1sw6_A 262 ILENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIA 312 (327)
T ss_dssp HHHHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCC
T ss_pred hHHHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccc
Confidence 999885 8888888 68999999999999999999999999999999887543
No 64
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.92 E-value=1.2e-24 Score=194.50 Aligned_cols=149 Identities=15% Similarity=0.115 Sum_probs=129.6
Q ss_pred CcchhhhcCCcchHHHHHHHHhhcCCCCCCCCccCCcccccCCcHHHHHhcCCCHHHHHHHHhcC-C---CCCCCchHHH
Q 009554 227 DTISIEKELPTEVAEEIRMLRLKSFPDDENTAVEVDPLREKRIKRIHKALDSDDVELVRLLLSES-E---ITLDEANALH 302 (532)
Q Consensus 227 ~~t~L~~a~~~~~~~~i~~lL~~~~~~~~~~~~~in~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~---in~~g~t~Lh 302 (532)
+.++|+.|+..+..+.+..++ .. .+ .+++..|..|+||||+ +..|+.+++++|++.| + .|..|.||||
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll-~~-~~-----~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 73 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLL-HR-EL-----VHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVH 73 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHH-HT-TC-----CCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred cchHHHHHHHhCCHHHHHHHH-Hh-hC-----cCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHH
Confidence 346777777777744444444 23 22 2488889999999999 9999999999999999 4 4578999999
Q ss_pred HHHHcCCHHHHHHHHHcCCCCCcCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCCcccHHH
Q 009554 303 YAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDLTLDGRSAVSICRRLTRPKDYQA 382 (532)
Q Consensus 303 ~A~~~g~~~~v~~LL~~~~advn~~d~~G~TpLh~Aa~~~~~~iv~~LL~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~ 382 (532)
+|+..|+.+++++|+..| ++++.+|..|+||||+|+.+|+.+++++|+++ ++++.+|.+|+||||+|+..|+...++.
T Consensus 74 ~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~ 151 (156)
T 1bd8_A 74 DAARTGFLDTLKVLVEHG-ADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDI 151 (156)
T ss_dssp HHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHH
T ss_pred HHHHcCcHHHHHHHHHcC-CCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHH
Confidence 999999999999999987 99999999999999999999999999999999 9999999999999999999998888887
Q ss_pred HHh
Q 009554 383 KTE 385 (532)
Q Consensus 383 ~~~ 385 (532)
+.+
T Consensus 152 Ll~ 154 (156)
T 1bd8_A 152 LQG 154 (156)
T ss_dssp HHT
T ss_pred HHh
Confidence 764
No 65
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.91 E-value=8.9e-25 Score=198.78 Aligned_cols=159 Identities=15% Similarity=0.067 Sum_probs=121.7
Q ss_pred HHHHHHHHhCcHH----HHHcccc-cccccccCcchhhhcCCcchHHHHHHHHhhcCCCCCCCCccCCcccccCCcHHHH
Q 009554 200 PILLAAFHCQLSQ----LLAQCVD-RIVRSDLDTISIEKELPTEVAEEIRMLRLKSFPDDENTAVEVDPLREKRIKRIHK 274 (532)
Q Consensus 200 t~L~~A~~~~~~~----Ll~~~~~-~~~~~~~~~t~L~~a~~~~~~~~i~~lL~~~~~~~~~~~~~in~~d~~g~t~Lh~ 274 (532)
+|||.|+..|..+ |++.+.+ ++.++..|.|+||.|+..+. .+++++|... + .+++..|..|+||||+
T Consensus 4 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll~~--g-----~~~~~~~~~g~t~L~~ 75 (172)
T 3v30_A 4 LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGE-IETVRFLLEW--G-----ADPHILAKERESALSL 75 (172)
T ss_dssp CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTC-HHHHHHHHHH--T-----CCTTCCCTTCCCHHHH
T ss_pred hhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCC-HHHHHHHHHc--C-----CCchhhcccCCCHHHH
Confidence 4555555555422 3444433 44555556666666665555 4555555322 2 2488889999999999
Q ss_pred HhcCCCHHHHHHHHhcC-CC---CCCCchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCChHHHHHHHcCCHHHHHHH
Q 009554 275 ALDSDDVELVRLLLSES-EI---TLDEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSL 350 (532)
Q Consensus 275 A~~~g~~~~v~~Ll~~g-~i---n~~g~t~Lh~A~~~g~~~~v~~LL~~~~advn~~d~~G~TpLh~Aa~~~~~~iv~~L 350 (532)
|+..|+.+++++|++.| ++ |..|+||||+|+..|+.+++++|++.+ ++++.+|..|+||||+|+..|+.+++++|
T Consensus 76 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~~~~~L 154 (172)
T 3v30_A 76 ASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARG-ADLTTEADSGYTPMDLAVALGYRKVQQVI 154 (172)
T ss_dssp HHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred HHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHHHHhCcHHHHHHH
Confidence 99999999999999999 44 578999999999999999999999987 99999999999999999999999999999
Q ss_pred HhCCCCCCccCCCCCcH
Q 009554 351 LTKGACASDLTLDGRSA 367 (532)
Q Consensus 351 L~~gad~~~~d~~G~Tp 367 (532)
+++|+++...+..|.||
T Consensus 155 ~~~~~~~~~~~~~~~~p 171 (172)
T 3v30_A 155 ENHILKLFQSNLVPADP 171 (172)
T ss_dssp HHHHHHHSCC-------
T ss_pred HHHHHHHhcccCCCCCC
Confidence 99999999999999987
No 66
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.91 E-value=4.9e-24 Score=191.63 Aligned_cols=148 Identities=18% Similarity=0.134 Sum_probs=126.8
Q ss_pred HHHHHHHHHhCcHH----HHHcccccccccccCcchhhhcCCcchHHHHHHHHhhcCCCCCCCCccCCcccccCCcHHHH
Q 009554 199 IPILLAAFHCQLSQ----LLAQCVDRIVRSDLDTISIEKELPTEVAEEIRMLRLKSFPDDENTAVEVDPLREKRIKRIHK 274 (532)
Q Consensus 199 ~t~L~~A~~~~~~~----Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~i~~lL~~~~~~~~~~~~~in~~d~~g~t~Lh~ 274 (532)
.++|+.|+..|..+ |++.+++++.++..|.|+||.|+. +. .+++++|... + .+++.+|..|+||||+
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~-~~~v~~Ll~~--g-----~~~~~~~~~g~t~L~~ 76 (162)
T 1ihb_A 6 GNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GN-PEIARRLLLR--G-----ANPDLKDRTGFAVIHD 76 (162)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SC-HHHHHHHHHT--T-----CCTTCCCTTSCCHHHH
T ss_pred hhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-Cc-HHHHHHHHHc--C-----CCCCCCCCCCCCHHHH
Confidence 67788888877633 667777788888889999998888 77 5666666332 3 3588899999999999
Q ss_pred HhcCCCHHHHHHHHhcC-CC---CCCCchHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCChHHHHHHHcCCHHHHHH
Q 009554 275 ALDSDDVELVRLLLSES-EI---TLDEANALHYAAAYCDPKVLSEVLSLGLAD-VNLRSSRGYTVLHIGAMRKEPSVIVS 349 (532)
Q Consensus 275 A~~~g~~~~v~~Ll~~g-~i---n~~g~t~Lh~A~~~g~~~~v~~LL~~~~ad-vn~~d~~G~TpLh~Aa~~~~~~iv~~ 349 (532)
|+..|+.+++++|++.| ++ |..|+||||+|+..|+.+++++|+..+ ++ ++.+|..|+||||+|+.+|+.+++++
T Consensus 77 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ 155 (162)
T 1ihb_A 77 AARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT-ASNVGHRNHKGDTACDLARLYGRNEVVSL 155 (162)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS-CCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcc-CCCCCCcCCCCCcHHHHHHHcCCHHHHHH
Confidence 99999999999999999 44 588999999999999999999999998 66 79999999999999999999999999
Q ss_pred HHhCCCC
Q 009554 350 LLTKGAC 356 (532)
Q Consensus 350 LL~~gad 356 (532)
|+++|||
T Consensus 156 Ll~~GAd 162 (162)
T 1ihb_A 156 MQANGAG 162 (162)
T ss_dssp HHHTC--
T ss_pred HHHhCCC
Confidence 9999986
No 67
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.91 E-value=1.1e-24 Score=214.41 Aligned_cols=180 Identities=14% Similarity=0.066 Sum_probs=151.1
Q ss_pred HHHHHHHhhCcHHHHHHHHHcCCC--cccccCCCCcHHHHHHHHHhCcHH----HHHccc-ccccccccCcchhhhcC--
Q 009554 165 EMMYASSIFELPELVSLFQRRLLN--FVGKAVAEDIIPILLAAFHCQLSQ----LLAQCV-DRIVRSDLDTISIEKEL-- 235 (532)
Q Consensus 165 ~~L~~A~~~~~~~lv~~ll~~~~~--i~~~~~~~n~~t~L~~A~~~~~~~----Ll~~~~-~~~~~~~~~~t~L~~a~-- 235 (532)
++++.|+..+..+.++.+++.+.+ ++.+| .+|.||||+|+..|+.+ |++.|+ +++..+..|.||++.++
T Consensus 78 ~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d--~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~ 155 (276)
T 4hbd_A 78 SDAHPELVRRHLVTFRAMSARLLDYVVNIAD--SNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALA 155 (276)
T ss_dssp TTCCHHHHHHHHHHHHHHCHHHHHHHHTCCC--TTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhcCcCCC--CCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHH
Confidence 345666777777777777776665 56654 44599999999999844 888998 99999999999999888
Q ss_pred ---CcchHHHHHHHHhhcCCCCCCCCccCCcccccCCcHHHHHhcCCCHHHHHHHHhcC-CC---CCCCchHHHHHHHcC
Q 009554 236 ---PTEVAEEIRMLRLKSFPDDENTAVEVDPLREKRIKRIHKALDSDDVELVRLLLSES-EI---TLDEANALHYAAAYC 308 (532)
Q Consensus 236 ---~~~~~~~i~~lL~~~~~~~~~~~~~in~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~i---n~~g~t~Lh~A~~~g 308 (532)
..+. .+++++|... + ..++..+..|+||||+|+..|+.++|++|++.| ++ |..|+||||+|+..|
T Consensus 156 ~~~~~~~-~~~v~~Ll~~--g-----~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g 227 (276)
T 4hbd_A 156 TLKTQDD-IETVLQLFRL--G-----NINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHG 227 (276)
T ss_dssp CCCSHHH-HHHHHHHHHH--S-----CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred Hhhhhhh-HHHHHHHHHc--C-----CCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCC
Confidence 5566 4555555333 2 236777889999999999999999999999999 54 689999999999999
Q ss_pred CHHHHHHHHHcCCCCCcCCCCCCChHHHHHHHcCCHHHHHHHHhCC
Q 009554 309 DPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKG 354 (532)
Q Consensus 309 ~~~~v~~LL~~~~advn~~d~~G~TpLh~Aa~~~~~~iv~~LL~~g 354 (532)
+.+++++||...|+|++.+|..|+||||+|+.+|+.+++++|++++
T Consensus 228 ~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 228 HKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp CHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred CHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 9999999999556999999999999999999999999999999864
No 68
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.91 E-value=5.4e-24 Score=186.07 Aligned_cols=123 Identities=21% Similarity=0.212 Sum_probs=114.3
Q ss_pred ccccCCcHHHHHhcCCCHHHHHHHHhcC-CC---CCCCchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCChHHHHHH
Q 009554 264 LREKRIKRIHKALDSDDVELVRLLLSES-EI---TLDEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGA 339 (532)
Q Consensus 264 ~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~i---n~~g~t~Lh~A~~~g~~~~v~~LL~~~~advn~~d~~G~TpLh~Aa 339 (532)
....+.||||+|+..|+.+++++|++.| ++ |..|+||||+|+..|+.+++++|++.+ +++|.+|..|+||||+|+
T Consensus 10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~t~L~~A~ 88 (136)
T 2jab_A 10 HGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNG-ADVNAVDAIGFTPLHLAA 88 (136)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHH
T ss_pred ccccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcCCCCCCCHHHHHH
Confidence 3567899999999999999999999999 54 578999999999999999999999986 999999999999999999
Q ss_pred HcCCHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCCcccHHHHHhcC
Q 009554 340 MRKEPSVIVSLLTKGACASDLTLDGRSAVSICRRLTRPKDYQAKTEQG 387 (532)
Q Consensus 340 ~~~~~~iv~~LL~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~~G 387 (532)
..|+.+++++|+++|++++.+|.+|+||||+|+..++...++.+.+.|
T Consensus 89 ~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 89 FIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999888765
No 69
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.90 E-value=8.6e-24 Score=195.91 Aligned_cols=150 Identities=15% Similarity=0.105 Sum_probs=134.2
Q ss_pred CCcHHHHHHHHHhCc----HHHHHcccccccccccCcchhhhcCCcchHHHHHHHHhhcCCCCCCCCccCCcccccCCcH
Q 009554 196 EDIIPILLAAFHCQL----SQLLAQCVDRIVRSDLDTISIEKELPTEVAEEIRMLRLKSFPDDENTAVEVDPLREKRIKR 271 (532)
Q Consensus 196 ~n~~t~L~~A~~~~~----~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~i~~lL~~~~~~~~~~~~~in~~d~~g~t~ 271 (532)
.++.||||+|+..|. ..|++.+.+++.++..|.||||.|+..+. .+++++|... + .+++..|..|+||
T Consensus 33 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll~~--g-----~~~~~~~~~g~t~ 104 (192)
T 2rfm_A 33 SYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNR-LGIAEKLLSK--G-----SNVNTKDFSGKTP 104 (192)
T ss_dssp TTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTC-HHHHHHHHHH--T-----CCTTCCCTTSCCH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCC-HHHHHHHHHC--C-----CCCCCCCCCCCcH
Confidence 345899999999997 44888999999999999999999999988 6667666433 2 3488899999999
Q ss_pred HHHHhcCCCHHHHHHHHhcC-C---CCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCChHHHHHHHcCCHHHH
Q 009554 272 IHKALDSDDVELVRLLLSES-E---ITLDEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVI 347 (532)
Q Consensus 272 Lh~A~~~g~~~~v~~Ll~~g-~---in~~g~t~Lh~A~~~g~~~~v~~LL~~~~advn~~d~~G~TpLh~Aa~~~~~~iv 347 (532)
||+|+..|+.+++++|++.| + .|..|.||||+|+..|+.+++++|+..+ ++++.+|..|+||||+|+.+|+.+++
T Consensus 105 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~~v 183 (192)
T 2rfm_A 105 LMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELG-ADISARDLTGLTAEASARIFGRQEVI 183 (192)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCTTCBCTTSCBHHHHHHHTTCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHhCcHHHH
Confidence 99999999999999999999 4 4688999999999999999999999986 99999999999999999999999999
Q ss_pred HHHHhCC
Q 009554 348 VSLLTKG 354 (532)
Q Consensus 348 ~~LL~~g 354 (532)
++|+++|
T Consensus 184 ~~Ll~~~ 190 (192)
T 2rfm_A 184 KIFTEVR 190 (192)
T ss_dssp HHHHHHH
T ss_pred HHHHhcc
Confidence 9999864
No 70
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.90 E-value=3.4e-23 Score=187.93 Aligned_cols=152 Identities=18% Similarity=0.179 Sum_probs=123.1
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHcCCCcccccCCCCcHHHHHHHHHhCcHHHHHcccccccccccCcchhhhcCCcchHHH
Q 009554 163 AVEMMYASSIFELPELVSLFQRRLLNFVGKAVAEDIIPILLAAFHCQLSQLLAQCVDRIVRSDLDTISIEKELPTEVAEE 242 (532)
Q Consensus 163 ~~~~L~~A~~~~~~~lv~~ll~~~~~i~~~~~~~n~~t~L~~A~~~~~~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~ 242 (532)
..++|+.|+..|..+++++|++++.+++.++.. +.||||+|+..+.. +
T Consensus 14 ~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~--g~t~L~~A~~~~~~------------------------------~ 61 (169)
T 2y1l_E 14 LGKKLLEAARAGRDDEVRILMANGADVNAEDAS--GWTPLHLAAFNGHL------------------------------E 61 (169)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT--SCCHHHHHHHTTCH------------------------------H
T ss_pred ccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCC--CCCHHHHHHHcCCH------------------------------H
Confidence 466777777777777777777777776665433 36666666665542 3
Q ss_pred HHHHHhhcCCCCCCCCccCCcccccCCcHHHHHhcCCCHHHHHHHHhcC-CC---CCCCchHHHHHHHcCCHHHHHHHHH
Q 009554 243 IRMLRLKSFPDDENTAVEVDPLREKRIKRIHKALDSDDVELVRLLLSES-EI---TLDEANALHYAAAYCDPKVLSEVLS 318 (532)
Q Consensus 243 i~~lL~~~~~~~~~~~~~in~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~i---n~~g~t~Lh~A~~~g~~~~v~~LL~ 318 (532)
++++|.. .+ .+++..|..|+||||+|+..|+.+++++|++.| ++ |..|.||||+|+..|+.+++++|++
T Consensus 62 ~v~~Ll~--~g-----~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 134 (169)
T 2y1l_E 62 IVEVLLK--NG-----ADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLK 134 (169)
T ss_dssp HHHHHHH--TT-----CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHH--cC-----CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 4444422 23 248888999999999999999999999999999 44 5789999999999999999999999
Q ss_pred cCCCCCcCCCCCCChHHHHHHHcCCHHHHHHHHhCC
Q 009554 319 LGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKG 354 (532)
Q Consensus 319 ~~~advn~~d~~G~TpLh~Aa~~~~~~iv~~LL~~g 354 (532)
.+ ++++.+|..|+||||+|+.+|+.+++++|++.|
T Consensus 135 ~g-~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 135 NG-ADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp TT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred cC-CCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 87 999999999999999999999999999999886
No 71
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.90 E-value=1.9e-24 Score=199.81 Aligned_cols=149 Identities=11% Similarity=0.035 Sum_probs=126.1
Q ss_pred CcchhhhcCCcchHHHHHHHHhhcCCCCCCCCccCCccc-ccCCcHHHHHhcCCCH----HHHHHHHhcC-CC---CCCC
Q 009554 227 DTISIEKELPTEVAEEIRMLRLKSFPDDENTAVEVDPLR-EKRIKRIHKALDSDDV----ELVRLLLSES-EI---TLDE 297 (532)
Q Consensus 227 ~~t~L~~a~~~~~~~~i~~lL~~~~~~~~~~~~~in~~d-~~g~t~Lh~A~~~g~~----~~v~~Ll~~g-~i---n~~g 297 (532)
+.++++.|+..+.+..+..++. . +++..+ ..|+||||+|+..|+. +++++||+.| ++ |..|
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~-~---------~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g 75 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFE-K---------GYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEG 75 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHH-H---------SSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTC
T ss_pred cccHHHHHHHcCCHHHHHHHHh-c---------CcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCC
Confidence 4467788888887677766663 1 255556 7899999999999985 5999999999 54 5889
Q ss_pred chHHHHHHHcCC------HHHHHHHHHcCCCCCcCCCCCCC-hHHHHHHHcC-----CHHHHHHHHh-CCCCCCccCCCC
Q 009554 298 ANALHYAAAYCD------PKVLSEVLSLGLADVNLRSSRGY-TVLHIGAMRK-----EPSVIVSLLT-KGACASDLTLDG 364 (532)
Q Consensus 298 ~t~Lh~A~~~g~------~~~v~~LL~~~~advn~~d~~G~-TpLh~Aa~~~-----~~~iv~~LL~-~gad~~~~d~~G 364 (532)
+||||+|+..|+ .++++.||..| +|+|.+|..|+ ||||+|+..+ +.+++++|++ +|+|++.+|..|
T Consensus 76 ~TpLh~a~~~~~~~~~~~~~iv~~Ll~~G-adin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G 154 (186)
T 3t8k_A 76 TTLFFPLFQGGGNDITGTTELCKIFLEKG-ADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWG 154 (186)
T ss_dssp CCTHHHHHHHCTTCHHHHHHHHHHHHHTT-CCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTS
T ss_pred CcHHHHHHHcCCcchhhHHHHHHHHHHCC-CCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCC
Confidence 999999999987 57899999886 99999999999 9999999954 4579999999 999999999999
Q ss_pred CcHHHHHHHcCCcccHHHHHhc
Q 009554 365 RSAVSICRRLTRPKDYQAKTEQ 386 (532)
Q Consensus 365 ~TpL~~A~~~~~~~~~~~~~~~ 386 (532)
+||||+|++.++...++++.+.
T Consensus 155 ~TpL~~A~~~~~~~~v~~L~~~ 176 (186)
T 3t8k_A 155 LTALEFVKRCQKPIALKMMEDY 176 (186)
T ss_dssp CCHHHHHHTTTCHHHHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999888888777654
No 72
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.90 E-value=2.9e-23 Score=177.81 Aligned_cols=122 Identities=27% Similarity=0.333 Sum_probs=116.0
Q ss_pred cCCcHHHHHhcCCCHHHHHHHHhcC-C---CCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCChHHHHHHHcC
Q 009554 267 KRIKRIHKALDSDDVELVRLLLSES-E---ITLDEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRK 342 (532)
Q Consensus 267 ~g~t~Lh~A~~~g~~~~v~~Ll~~g-~---in~~g~t~Lh~A~~~g~~~~v~~LL~~~~advn~~d~~G~TpLh~Aa~~~ 342 (532)
+|+||||+|+..|+.+++++|++.| + .|..|.||||+|+..|+.+++++|+..+ ++++.+|..|+||||+|+..|
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~ 79 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNG 79 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTT
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcC-CCCcccCCCCCcHHHHHHHcC
Confidence 4899999999999999999999999 4 4578999999999999999999999987 999999999999999999999
Q ss_pred CHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCCcccHHHHHhcCCc
Q 009554 343 EPSVIVSLLTKGACASDLTLDGRSAVSICRRLTRPKDYQAKTEQGKE 389 (532)
Q Consensus 343 ~~~iv~~LL~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~~G~~ 389 (532)
+.+++++|+++|++++.+|..|+||||+|+..++...++.+.+.|++
T Consensus 80 ~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 80 HLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999988863
No 73
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.90 E-value=3.9e-24 Score=205.78 Aligned_cols=157 Identities=18% Similarity=0.177 Sum_probs=114.1
Q ss_pred ccCcchhhhcCCcchHHHHHHHHhhcCCCCCCCCccCCcccccCCcHHHHHhcCCCHHHHHHHHhcC-CC---CCCCchH
Q 009554 225 DLDTISIEKELPTEVAEEIRMLRLKSFPDDENTAVEVDPLREKRIKRIHKALDSDDVELVRLLLSES-EI---TLDEANA 300 (532)
Q Consensus 225 ~~~~t~L~~a~~~~~~~~i~~lL~~~~~~~~~~~~~in~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~i---n~~g~t~ 300 (532)
..|.|+||.|+..+. .++++.|+ . +|+ +++. +..|.||||+|+..|+.+++++|++.| ++ |..|+||
T Consensus 3 ~~g~t~L~~a~~~~~-~~~~~~ll-~-~g~-----~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~ 73 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNL-RKTGSERI-A-HGM-----RVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITA 73 (239)
T ss_dssp -------------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCH
T ss_pred ccccccCchhhhhhh-HHHHHHHh-c-cCC-----Cccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence 458899999998888 55555552 2 343 3654 467899999999999999999999999 44 5889999
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCC-cHHHHH--HHcCCc
Q 009554 301 LHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDLTLDGR-SAVSIC--RRLTRP 377 (532)
Q Consensus 301 Lh~A~~~g~~~~v~~LL~~~~advn~~d~~G~TpLh~Aa~~~~~~iv~~LL~~gad~~~~d~~G~-TpL~~A--~~~~~~ 377 (532)
||+|+..|+.+++++||..+ +++|.+|..|+||||+|+.+|+.+++++|+++|++++.+|..|. ||||+| +..|+.
T Consensus 74 L~~A~~~g~~~~v~~Ll~~g-a~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~ 152 (239)
T 1ycs_B 74 LHNAVCAGHTEIVKFLVQFG-VNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYT 152 (239)
T ss_dssp HHHHHHHTCHHHHHHHHHHT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCC
T ss_pred HHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccH
Confidence 99999999999999999987 99999999999999999999999999999999999999998887 999999 777888
Q ss_pred ccHHHHHhcCCccc
Q 009554 378 KDYQAKTEQGKETN 391 (532)
Q Consensus 378 ~~~~~~~~~G~~~~ 391 (532)
..++.+.+.|....
T Consensus 153 ~~~~~Ll~~~a~~~ 166 (239)
T 1ycs_B 153 QCSQFLYGVQEKMG 166 (239)
T ss_dssp CHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhccc
Confidence 88888887776543
No 74
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.90 E-value=9.9e-24 Score=190.84 Aligned_cols=152 Identities=13% Similarity=0.048 Sum_probs=124.7
Q ss_pred cHHHHHHHHHhCcHH----HHHcccccccccccCcchhhhcCCcchHHHHHHHHhhcCCCCCCCCccCCcccccCCcHHH
Q 009554 198 IIPILLAAFHCQLSQ----LLAQCVDRIVRSDLDTISIEKELPTEVAEEIRMLRLKSFPDDENTAVEVDPLREKRIKRIH 273 (532)
Q Consensus 198 ~~t~L~~A~~~~~~~----Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~i~~lL~~~~~~~~~~~~~in~~d~~g~t~Lh 273 (532)
+.||||.|+..|..+ |++.+.+++.++..|.|+||.|+..+. .+++++|... + .+++..+..|.||||
T Consensus 3 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll~~--g-----~~~~~~~~~g~t~L~ 74 (167)
T 3v31_A 3 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQ-IAVVEFLLQN--G-----ADPQLLGKGRESALS 74 (167)
T ss_dssp TCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTC-HHHHHHHHHT--T-----CCTTCCCTTCCCHHH
T ss_pred CcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCC-HHHHHHHHHc--C-----CCCCCcCCCCCcHHH
Confidence 356677777666533 556666666666677777777776666 4566666322 3 248888999999999
Q ss_pred HHhcCCCHHHHHHHHhcC-C---CCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCChHHHHHHHcCCHHHHHH
Q 009554 274 KALDSDDVELVRLLLSES-E---ITLDEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVS 349 (532)
Q Consensus 274 ~A~~~g~~~~v~~Ll~~g-~---in~~g~t~Lh~A~~~g~~~~v~~LL~~~~advn~~d~~G~TpLh~Aa~~~~~~iv~~ 349 (532)
+|+..|+.+++++|++.| + .|..|.||||+|+..|+.+++++|+..+ ++++.+|..|+||||+|+..|+.+++++
T Consensus 75 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~~~~ 153 (167)
T 3v31_A 75 LACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESG-ADPTIETDSGYNSMDLAVALGYRSVQQV 153 (167)
T ss_dssp HHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCcHHHHHH
Confidence 999999999999999999 4 4578999999999999999999999986 9999999999999999999999999999
Q ss_pred HHhCCCCCC
Q 009554 350 LLTKGACAS 358 (532)
Q Consensus 350 LL~~gad~~ 358 (532)
|+++++++.
T Consensus 154 L~~~~~~~~ 162 (167)
T 3v31_A 154 IESHLLKLL 162 (167)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 999887654
No 75
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.90 E-value=4.1e-24 Score=207.76 Aligned_cols=124 Identities=19% Similarity=0.188 Sum_probs=108.9
Q ss_pred cccCCcHHHHHh---cCCCHHHHHHHHhcC-C--------------CCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCcC
Q 009554 265 REKRIKRIHKAL---DSDDVELVRLLLSES-E--------------ITLDEANALHYAAAYCDPKVLSEVLSLGLADVNL 326 (532)
Q Consensus 265 d~~g~t~Lh~A~---~~g~~~~v~~Ll~~g-~--------------in~~g~t~Lh~A~~~g~~~~v~~LL~~~~advn~ 326 (532)
|..|+||||+|+ ..|+.+++++|++.| + .|..|+||||+|+..|+.+++++||+.+ +++|.
T Consensus 43 ~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~ 121 (260)
T 3jxi_A 43 PSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKG-ADVHA 121 (260)
T ss_dssp TTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTT-CCTTC
T ss_pred cCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCC-CCcCc
Confidence 377999999999 789999999999987 2 1238999999999999999999999987 99999
Q ss_pred CC--------------CCCChHHHHHHHcCCHHHHHHHHh---CCCCCCccCCCCCcHHHHHHHcCCc---------ccH
Q 009554 327 RS--------------SRGYTVLHIGAMRKEPSVIVSLLT---KGACASDLTLDGRSAVSICRRLTRP---------KDY 380 (532)
Q Consensus 327 ~d--------------~~G~TpLh~Aa~~~~~~iv~~LL~---~gad~~~~d~~G~TpL~~A~~~~~~---------~~~ 380 (532)
+| ..|+||||+|+..|+.+++++|++ +|++++.+|..|+||||+|+..++. ..+
T Consensus 122 ~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v 201 (260)
T 3jxi_A 122 QARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMY 201 (260)
T ss_dssp CCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred cccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHH
Confidence 99 689999999999999999999999 9999999999999999999987763 455
Q ss_pred HHHHhcCCc
Q 009554 381 QAKTEQGKE 389 (532)
Q Consensus 381 ~~~~~~G~~ 389 (532)
+.+.+.|..
T Consensus 202 ~~Ll~~ga~ 210 (260)
T 3jxi_A 202 DLLLIKCAK 210 (260)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhCcc
Confidence 555554443
No 76
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.90 E-value=2.3e-24 Score=188.49 Aligned_cols=118 Identities=20% Similarity=0.133 Sum_probs=108.5
Q ss_pred cccccCCcHHHHHhcCCCHHHHHHHHhcC-C---CCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCChHHHHH
Q 009554 263 PLREKRIKRIHKALDSDDVELVRLLLSES-E---ITLDEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIG 338 (532)
Q Consensus 263 ~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~---in~~g~t~Lh~A~~~g~~~~v~~LL~~~~advn~~d~~G~TpLh~A 338 (532)
.+|..|+||||+|+..|+.+++++|++.| + .|..|+||||+|+..|+.+++++|+..+ ++++.+|..|+||||+|
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A 83 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK-ALVNTTGYQNDSPLHDA 83 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCGGGCCHHHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CcccCcCCCCCCHHHHH
Confidence 56889999999999999999999999999 4 4578999999999999999999999987 99999999999999999
Q ss_pred HHcCCHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCCcccHH
Q 009554 339 AMRKEPSVIVSLLTKGACASDLTLDGRSAVSICRRLTRPKDYQ 381 (532)
Q Consensus 339 a~~~~~~iv~~LL~~gad~~~~d~~G~TpL~~A~~~~~~~~~~ 381 (532)
+..|+.+++++|+++|++++.+|..|+||||+|+..+....+.
T Consensus 84 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~ 126 (137)
T 3c5r_A 84 AKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLL 126 (137)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHS
T ss_pred HHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHh
Confidence 9999999999999999999999999999999998654444433
No 77
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.90 E-value=3.5e-26 Score=218.86 Aligned_cols=192 Identities=10% Similarity=-0.031 Sum_probs=142.4
Q ss_pred HHHHHcCCCcccccC-CCCcHHHHHHHHHhCcHH----HHHcccccccccccCcchhhhcCCcchHHHHHHHHhhcCCCC
Q 009554 180 SLFQRRLLNFVGKAV-AEDIIPILLAAFHCQLSQ----LLAQCVDRIVRSDLDTISIEKELPTEVAEEIRMLRLKSFPDD 254 (532)
Q Consensus 180 ~~ll~~~~~i~~~~~-~~n~~t~L~~A~~~~~~~----Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~i~~lL~~~~~~~ 254 (532)
+.+++.+.+.+..+. ..++.|+||+|+..|..+ |++.|++++.++..|.||||.|+..+. .+++++|+. .|
T Consensus 2 ~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~-~~~v~~Ll~--~g- 77 (229)
T 2vge_A 2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGAN-YSIVDFLIT--AG- 77 (229)
T ss_dssp --------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTC-HHHHHHHHH--TT-
T ss_pred eehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCC-HHHHHHHHH--CC-
Confidence 455666666654332 345688888888888743 777788888888888888888887777 566666632 23
Q ss_pred CCCCccCCcccccCCcHHHHHhcCCCHHHHHHHHhcC-CCC----CCCchHHHHH--HHcCCHHHHHHHHHcCCCCCcCC
Q 009554 255 ENTAVEVDPLREKRIKRIHKALDSDDVELVRLLLSES-EIT----LDEANALHYA--AAYCDPKVLSEVLSLGLADVNLR 327 (532)
Q Consensus 255 ~~~~~~in~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~in----~~g~t~Lh~A--~~~g~~~~v~~LL~~~~advn~~ 327 (532)
+++|.+|..|+||||+|+..|+.+++++|++.| +++ ..|+||||+| +..|+.+++++|+..| ++++.+
T Consensus 78 ----a~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~g-a~~~~~ 152 (229)
T 2vge_A 78 ----ANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVE-QSMGLM 152 (229)
T ss_dssp ----CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHH-HHTTTS
T ss_pred ----CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcC-CCcccc
Confidence 248888888999999999999999999999888 432 5788999998 8888899888888887 889888
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHhCCCC--CCccCCCCCcHHHHHHHcCCcccHHHH
Q 009554 328 SSRGYTVLHIGAMRKEPSVIVSLLTKGAC--ASDLTLDGRSAVSICRRLTRPKDYQAK 383 (532)
Q Consensus 328 d~~G~TpLh~Aa~~~~~~iv~~LL~~gad--~~~~d~~G~TpL~~A~~~~~~~~~~~~ 383 (532)
|..|.||||.++..+. .++|++.|++ ++.+|.+|+||||+|++.|+...++..
T Consensus 153 ~~~~~~~l~~~~~~~~---~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~ 207 (229)
T 2vge_A 153 NSGAVYALWDYSAEFG---DELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRN 207 (229)
T ss_dssp GGGEEEESSCBCCSST---TBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGG
T ss_pred cCCchHHHHHHhhccc---cccCccccccccccccCCCcccHHHHHHHcCCcceeehh
Confidence 8888888886655543 3677888888 678888899999999988877766543
No 78
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.89 E-value=6.5e-24 Score=190.17 Aligned_cols=130 Identities=19% Similarity=0.109 Sum_probs=114.9
Q ss_pred CCcccccCCcHHHHHhcCCCHHHHHHHHhcC-CC---CCCCchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCh-HH
Q 009554 261 VDPLREKRIKRIHKALDSDDVELVRLLLSES-EI---TLDEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYT-VL 335 (532)
Q Consensus 261 in~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~i---n~~g~t~Lh~A~~~g~~~~v~~LL~~~~advn~~d~~G~T-pL 335 (532)
.+..+..|.||||+|+..|+.+++++|++.| ++ |..|+||||+|+ .|+.+++++|+..+ +++|.+|..|+| ||
T Consensus 5 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g-~~~~~~d~~g~ttpL 82 (156)
T 1bi7_B 5 AGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHG-AEPNCADPATLTRPV 82 (156)
T ss_dssp -----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTT-CCCCCCCTTTCCCHH
T ss_pred ccCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcC-CCCCCcCCCCCcHHH
Confidence 4456788999999999999999999999999 44 578999999995 89999999999986 999999999999 99
Q ss_pred HHHHHcCCHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCCcccHHHHHhcCCcccc
Q 009554 336 HIGAMRKEPSVIVSLLTKGACASDLTLDGRSAVSICRRLTRPKDYQAKTEQGKETNK 392 (532)
Q Consensus 336 h~Aa~~~~~~iv~~LL~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~~G~~~~~ 392 (532)
|+|+.+|+.+++++|+++|++++.+|..|+||||+|+..++...++.+.+.|..+..
T Consensus 83 ~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~ 139 (156)
T 1bi7_B 83 HDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRG 139 (156)
T ss_dssp HHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----
T ss_pred HHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCc
Confidence 999999999999999999999999999999999999999999999999999887654
No 79
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.89 E-value=3e-23 Score=187.29 Aligned_cols=128 Identities=22% Similarity=0.242 Sum_probs=118.7
Q ss_pred ccccCCcHHHHHhcCCCHHHHHHHHhcC-----CCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCChHHHHH
Q 009554 264 LREKRIKRIHKALDSDDVELVRLLLSES-----EITLDEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIG 338 (532)
Q Consensus 264 ~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-----~in~~g~t~Lh~A~~~g~~~~v~~LL~~~~advn~~d~~G~TpLh~A 338 (532)
.|..|.||||.|+..|+.++++.|++.+ ..+..|+||||+|+..|+.+++++|++.+ ++++.+|..|+||||+|
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A 82 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG-ADVHAKDKGGLVPLHNA 82 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHH
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcC-CCCCccCCCCCCHHHHH
Confidence 3678899999999999999999999966 24577899999999999999999999987 99999999999999999
Q ss_pred HHcCCHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCCcccHHHHHhcCCcccc
Q 009554 339 AMRKEPSVIVSLLTKGACASDLTLDGRSAVSICRRLTRPKDYQAKTEQGKETNK 392 (532)
Q Consensus 339 a~~~~~~iv~~LL~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~~G~~~~~ 392 (532)
+..|+.+++++|+++|++++.+|..|+||||+|+..++...++.+.+.|..++.
T Consensus 83 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~ 136 (165)
T 3twr_A 83 CSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTK 136 (165)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred HHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcc
Confidence 999999999999999999999999999999999999999999999999887654
No 80
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.89 E-value=3e-23 Score=190.10 Aligned_cols=136 Identities=12% Similarity=0.111 Sum_probs=112.0
Q ss_pred cccccccCcchhhhcCCcchHHHHHHHHhhcCCCCCCCCccCCcccccCCcHHHHHhcCCCHHHHHHHHhcC-C---CCC
Q 009554 220 RIVRSDLDTISIEKELPTEVAEEIRMLRLKSFPDDENTAVEVDPLREKRIKRIHKALDSDDVELVRLLLSES-E---ITL 295 (532)
Q Consensus 220 ~~~~~~~~~t~L~~a~~~~~~~~i~~lL~~~~~~~~~~~~~in~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~---in~ 295 (532)
++.++..|.|+||.|+..+. .+++++|... + .++|..|..|+||||+|+..|+.+++++|++.| + .|.
T Consensus 32 ~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll~~--g-----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~ 103 (179)
T 3f6q_A 32 LNQGDDHGFSPLHWACREGR-SAVVEMLIMR--G-----ARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNE 103 (179)
T ss_dssp TTCCCTTSCCHHHHHHHTTC-HHHHHHHHHT--T-----CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred ccccCCCCCCHHHHHHHcCc-HHHHHHHHHc--C-----CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCC
Confidence 34444444444444444444 3455555322 3 358888999999999999999999999999999 4 458
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCC
Q 009554 296 DEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDLTLDG 364 (532)
Q Consensus 296 ~g~t~Lh~A~~~g~~~~v~~LL~~~~advn~~d~~G~TpLh~Aa~~~~~~iv~~LL~~gad~~~~d~~G 364 (532)
.|.||||+|+..|+.++++.|+..+ ++++.+|..|+||||+|+..++.+++++|+++|++++..+..+
T Consensus 104 ~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~~~~~~~~ 171 (179)
T 3f6q_A 104 HGNVPLHYACFWGQDQVAEDLVANG-ALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIPYKD 171 (179)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHTT-CCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCCCSCBCCCC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCC-CCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhcCcccCCccc
Confidence 8999999999999999999999987 9999999999999999999999999999999999999877654
No 81
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.89 E-value=1.9e-24 Score=207.94 Aligned_cols=168 Identities=13% Similarity=0.032 Sum_probs=118.2
Q ss_pred HHHHHHHHHhCcH----HHHHcccccccccccCcchhhhcCCcchHHHHHHHHhhcCCCCCCCCccCCcccccCCcHHHH
Q 009554 199 IPILLAAFHCQLS----QLLAQCVDRIVRSDLDTISIEKELPTEVAEEIRMLRLKSFPDDENTAVEVDPLREKRIKRIHK 274 (532)
Q Consensus 199 ~t~L~~A~~~~~~----~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~i~~lL~~~~~~~~~~~~~in~~d~~g~t~Lh~ 274 (532)
.||||.|+..+.. .|+++|++++.. ..+.|+||.|+..+. .+++++|+ . .+ .++|.+|..|+||||+
T Consensus 6 ~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~-~~~v~~Ll-~-~g-----~~~~~~d~~g~t~L~~ 76 (239)
T 1ycs_B 6 QVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGE-FDLVQRII-Y-EV-----DDPSLPNDEGITALHN 76 (239)
T ss_dssp --------------------------------CHHHHHHHHHHTC-HHHHHHHT-S-TT-----SSCCCCCTTSCCHHHH
T ss_pred cccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCC-HHHHHHHH-H-cC-----CCCCCcCCCCCCHHHH
Confidence 5555555555542 255555555543 345566666665555 45555552 2 23 3588999999999999
Q ss_pred HhcCCCHHHHHHHHhcC-CC---CCCCchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCC-hHHHHH--HHcCCHHHH
Q 009554 275 ALDSDDVELVRLLLSES-EI---TLDEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGY-TVLHIG--AMRKEPSVI 347 (532)
Q Consensus 275 A~~~g~~~~v~~Ll~~g-~i---n~~g~t~Lh~A~~~g~~~~v~~LL~~~~advn~~d~~G~-TpLh~A--a~~~~~~iv 347 (532)
|+..|+.+++++|++.| ++ |..|+||||+|+..|+.+++++||..+ ++++.++..|. ||||+| +..|+.+++
T Consensus 77 A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~~~~t~l~~a~~~~~g~~~~~ 155 (239)
T 1ycs_B 77 AVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESG-AAVFAMTYSDMQTAADKCEEMEEGYTQCS 155 (239)
T ss_dssp HHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCSSSCCCHHHHCCSSSTTCCCHH
T ss_pred HHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCcceecCCCCcchHHHHHHhhhccHHHH
Confidence 99999999999999999 54 588999999999999999999999987 99999998887 999999 888999999
Q ss_pred HHHHhCCCCCCcc---------CCCCCcHHHHHHHcCC
Q 009554 348 VSLLTKGACASDL---------TLDGRSAVSICRRLTR 376 (532)
Q Consensus 348 ~~LL~~gad~~~~---------d~~G~TpL~~A~~~~~ 376 (532)
++|+++|++++.. +..|.+|++++.+.|.
T Consensus 156 ~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~ 193 (239)
T 1ycs_B 156 QFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD 193 (239)
T ss_dssp HHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred HHHHHhhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence 9999999999877 5668888888776553
No 82
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.89 E-value=2.8e-23 Score=186.03 Aligned_cols=139 Identities=13% Similarity=0.022 Sum_probs=105.1
Q ss_pred ccccCcchhhhcCCcchHHHHHHHHhhcCCCCCCCCccCCcccccCCcHHHHHhcCCCHHHHHHHHhcC-CC---CCCCc
Q 009554 223 RSDLDTISIEKELPTEVAEEIRMLRLKSFPDDENTAVEVDPLREKRIKRIHKALDSDDVELVRLLLSES-EI---TLDEA 298 (532)
Q Consensus 223 ~~~~~~t~L~~a~~~~~~~~i~~lL~~~~~~~~~~~~~in~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~i---n~~g~ 298 (532)
.+..+.|+||.|+..+. .+++++|+ . .| .++|..|..|+||||+|+ .|+.+++++|++.| ++ |..|+
T Consensus 8 ~~~~~~t~L~~A~~~g~-~~~v~~Ll-~-~g-----~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ 78 (156)
T 1bi7_B 8 SMEPSADWLATAAARGR-VEEVRALL-E-AG-----ANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATL 78 (156)
T ss_dssp --CCSTTHHHHHHHHTC-HHHHHHHH-T-TT-----CCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTC
T ss_pred CCccchHHHHHHHHcCC-HHHHHHHH-H-cC-----CCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCC
Confidence 44567778888887777 45555553 2 23 358899999999999986 99999999999999 54 57899
Q ss_pred h-HHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCCcHHHHH
Q 009554 299 N-ALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDLTLDGRSAVSIC 371 (532)
Q Consensus 299 t-~Lh~A~~~g~~~~v~~LL~~~~advn~~d~~G~TpLh~Aa~~~~~~iv~~LL~~gad~~~~d~~G~TpL~~A 371 (532)
| |||+|+..|+.+++++|+..+ ++++.+|..|+||||+|+.+|+.+++++|+++|++++.+|..|.||.+-+
T Consensus 79 ttpL~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 79 TRPVHDAAREGFLDTLVVLHRAG-ARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP 151 (156)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHHT-CCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred cHHHHHHHHCCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence 8 999999999999999999997 99999999999999999999999999999999999999999999998754
No 83
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.88 E-value=4.9e-22 Score=177.40 Aligned_cols=144 Identities=17% Similarity=0.145 Sum_probs=122.1
Q ss_pred HHHHHHHHHhCcHH----HHHc-ccccccccccCcchhhhcCCcchHHHHHHHHhhcCCCCCCCCccCCcccccCCcHHH
Q 009554 199 IPILLAAFHCQLSQ----LLAQ-CVDRIVRSDLDTISIEKELPTEVAEEIRMLRLKSFPDDENTAVEVDPLREKRIKRIH 273 (532)
Q Consensus 199 ~t~L~~A~~~~~~~----Ll~~-~~~~~~~~~~~~t~L~~a~~~~~~~~i~~lL~~~~~~~~~~~~~in~~d~~g~t~Lh 273 (532)
.++|+.|+..|..+ |++. +.+++..+..|.||||. +..+. .+++++|.. .| .++|.+|..|+||||
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~-~~~v~~Ll~--~g-----~~~~~~~~~g~t~L~ 73 (156)
T 1bd8_A 3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGS-TAIALELLK--QG-----ASPNVQDTSGTSPVH 73 (156)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTC-HHHHHHHHH--TT-----CCTTCCCTTSCCHHH
T ss_pred chHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCC-HHHHHHHHH--CC-----CCCCCcCCCCCCHHH
Confidence 57788888877744 4444 33777788888999999 77777 566666632 23 358899999999999
Q ss_pred HHhcCCCHHHHHHHHhcC-C---CCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCChHHHHHHHcCCHHHHHH
Q 009554 274 KALDSDDVELVRLLLSES-E---ITLDEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVS 349 (532)
Q Consensus 274 ~A~~~g~~~~v~~Ll~~g-~---in~~g~t~Lh~A~~~g~~~~v~~LL~~~~advn~~d~~G~TpLh~Aa~~~~~~iv~~ 349 (532)
+|+..|+.+++++|++.| + .|..|+||||+|+..|+.+++++|+.. ++++.+|..|+||||+|+.+|+.+++++
T Consensus 74 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~g~t~l~~A~~~~~~~~v~~ 151 (156)
T 1bd8_A 74 DAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE--SDLHRRDARGLTPLELALQRGAQDLVDI 151 (156)
T ss_dssp HHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT--SCTTCCCTTSCCHHHHHHHSCCHHHHHH
T ss_pred HHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc--cCCCCcCCCCCCHHHHHHHcCcHHHHHH
Confidence 999999999999999999 4 457899999999999999999999987 8999999999999999999999999999
Q ss_pred HHhC
Q 009554 350 LLTK 353 (532)
Q Consensus 350 LL~~ 353 (532)
|+++
T Consensus 152 Ll~~ 155 (156)
T 1bd8_A 152 LQGH 155 (156)
T ss_dssp HHTT
T ss_pred HHhh
Confidence 9975
No 84
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.88 E-value=1.3e-22 Score=180.95 Aligned_cols=123 Identities=19% Similarity=0.218 Sum_probs=116.1
Q ss_pred CCcHHHHHhcCCCHHHHHHHHhcC-C--CCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCChHHHHHHHcCCH
Q 009554 268 RIKRIHKALDSDDVELVRLLLSES-E--ITLDEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEP 344 (532)
Q Consensus 268 g~t~Lh~A~~~g~~~~v~~Ll~~g-~--in~~g~t~Lh~A~~~g~~~~v~~LL~~~~advn~~d~~G~TpLh~Aa~~~~~ 344 (532)
..||||.|+..|+.+++++|++.| + .|..|.||||+|+..|+.+++++|++.+ ++++.+|..|+||||+|+..|+.
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~ 80 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAG-VSRDARTKVDRTPLHMAASEGHA 80 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTCCCCCCTTCCCHHHHHHHHTCHHHHHHHHTTT-CCTTCCCTTCCCHHHHHHHHTCH
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcChH
Confidence 358999999999999999999999 3 4678999999999999999999999887 99999999999999999999999
Q ss_pred HHHHHHHhCCCCCCccCCCCCcHHHHHHHcCCcccHHHHHhcCCccc
Q 009554 345 SVIVSLLTKGACASDLTLDGRSAVSICRRLTRPKDYQAKTEQGKETN 391 (532)
Q Consensus 345 ~iv~~LL~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~~G~~~~ 391 (532)
+++++|+++|++++.+|..|+||||+|+..++...++.+.+.|..++
T Consensus 81 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~ 127 (153)
T 1awc_B 81 NIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVH 127 (153)
T ss_dssp HHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc
Confidence 99999999999999999999999999999999999999999887654
No 85
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.88 E-value=1.4e-22 Score=173.70 Aligned_cols=107 Identities=25% Similarity=0.251 Sum_probs=99.7
Q ss_pred cccCCcHHHHHhcCCCHHHHHHHHhcC-CC---CCCCchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCChHHHHHHH
Q 009554 265 REKRIKRIHKALDSDDVELVRLLLSES-EI---TLDEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAM 340 (532)
Q Consensus 265 d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~i---n~~g~t~Lh~A~~~g~~~~v~~LL~~~~advn~~d~~G~TpLh~Aa~ 340 (532)
+..|.||||+|+..|+.+++++|++.| ++ |..|+||||+|+..|+.+++++|+..+ +++|.+|..|+||||+|+.
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~tpL~~A~~ 82 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKG-ADINAPDKHHITPLLSAVY 82 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCcCCCCCCCHHHHHHH
Confidence 567889999999999999999999999 44 578999999999999999999999886 9999999999999999999
Q ss_pred cCCHHHHHHHHhCCCCCCccCCCCCcHHHHHH
Q 009554 341 RKEPSVIVSLLTKGACASDLTLDGRSAVSICR 372 (532)
Q Consensus 341 ~~~~~iv~~LL~~gad~~~~d~~G~TpL~~A~ 372 (532)
.|+.+++++|+++|++++.+|.+|+||||+|.
T Consensus 83 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~ 114 (123)
T 3aaa_C 83 EGHVSCVKLLLSKGADKTVKGPDGLTAFEATD 114 (123)
T ss_dssp HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCC
T ss_pred cCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhC
Confidence 99999999999999999999999999999984
No 86
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.88 E-value=9.5e-23 Score=178.12 Aligned_cols=130 Identities=12% Similarity=0.059 Sum_probs=114.7
Q ss_pred ccccccccccCcchhhhcCCcchHHHHHHHHhhcCCCCCCCCccCCcccccCCcHHHHHhcCCCHHHHHHHHhcC-CC--
Q 009554 217 CVDRIVRSDLDTISIEKELPTEVAEEIRMLRLKSFPDDENTAVEVDPLREKRIKRIHKALDSDDVELVRLLLSES-EI-- 293 (532)
Q Consensus 217 ~~~~~~~~~~~~t~L~~a~~~~~~~~i~~lL~~~~~~~~~~~~~in~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~i-- 293 (532)
+.+++.++..+.|+||.|+..+. .+++++|+.. + .++|.+|..|+||||+|+. |+.+++++|++.| ++
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll~~--g-----~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~ 72 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAARGQ-VETVRQLLEA--G-----ADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNC 72 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHTTC-HHHHHHHHHT--T-----CCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSC
T ss_pred CCCccCCCCCCccHHHHHHHcCC-HHHHHHHHHc--C-----CCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCC
Confidence 35677888889999999888888 5566655322 3 3588999999999999999 9999999999999 54
Q ss_pred -CCC-CchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCChHHHHHHHcCCHHHHHHHHhCCCC
Q 009554 294 -TLD-EANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGAC 356 (532)
Q Consensus 294 -n~~-g~t~Lh~A~~~g~~~~v~~LL~~~~advn~~d~~G~TpLh~Aa~~~~~~iv~~LL~~gad 356 (532)
|.. |+||||+|+..|+.+++++|+..+ ++++.+|..|+||||+|+.+|+.+++++|+++|||
T Consensus 73 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 73 ADPATLTRPVHDAAREGFLDTLVVLHRAG-ARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp CBTTTTBCHHHHHHHHTCHHHHHHHHHTC-CCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred cCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 466 999999999999999999999987 99999999999999999999999999999999986
No 87
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.87 E-value=4.6e-23 Score=195.65 Aligned_cols=129 Identities=16% Similarity=0.184 Sum_probs=112.1
Q ss_pred CcccccCCcHHHHHhcCCCHHHHHHHHhcC-CC---CCCCchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCChHHHH
Q 009554 262 DPLREKRIKRIHKALDSDDVELVRLLLSES-EI---TLDEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHI 337 (532)
Q Consensus 262 n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~i---n~~g~t~Lh~A~~~g~~~~v~~LL~~~~advn~~d~~G~TpLh~ 337 (532)
+..+..|.||||+|+..|+.+++++|++.| ++ |..|+||||+|+..|+.+++++||..+|+++|.+|..|+||||+
T Consensus 67 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~ 146 (222)
T 3ehr_A 67 AEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHA 146 (222)
T ss_dssp HHHEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHH
T ss_pred cccccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHH
Confidence 345778999999999999999999999999 44 58899999999999999999999999669999999999999999
Q ss_pred HHHcCCHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCCcccHHHHHhcCCcc
Q 009554 338 GAMRKEPSVIVSLLTKGACASDLTLDGRSAVSICRRLTRPKDYQAKTEQGKET 390 (532)
Q Consensus 338 Aa~~~~~~iv~~LL~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~~G~~~ 390 (532)
|+.+|+.+++++|+++|++++.+|.+|+||||+|+..++...++.+...|...
T Consensus 147 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~ 199 (222)
T 3ehr_A 147 AAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVR 199 (222)
T ss_dssp HHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC---------
T ss_pred HHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhh
Confidence 99999999999999999999999999999999999887777777777666543
No 88
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.87 E-value=8.6e-23 Score=195.20 Aligned_cols=132 Identities=21% Similarity=0.255 Sum_probs=120.5
Q ss_pred cCCcccccCCcHHHHHhcCCCHHHHHHHHhcC-CC---CCCCchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCChHH
Q 009554 260 EVDPLREKRIKRIHKALDSDDVELVRLLLSES-EI---TLDEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVL 335 (532)
Q Consensus 260 ~in~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~i---n~~g~t~Lh~A~~~g~~~~v~~LL~~~~advn~~d~~G~TpL 335 (532)
..+..+..|.||||+|+..|+.+++++|++.| ++ |..|+||||+|+..|+.+++++||+.| +++|.+|..|+|||
T Consensus 13 ~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g-a~~n~~d~~g~tpL 91 (229)
T 2vge_A 13 KARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAG-ANVNSPDSHGWTPL 91 (229)
T ss_dssp CCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHH
T ss_pred cccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHH
Confidence 34556778899999999999999999999999 54 588999999999999999999999986 99999999999999
Q ss_pred HHHHHcCCHHHHHHHHhCCCCCCccC-CCCCcHHHHH--HHcCCcccHHHHHhcCCcccc
Q 009554 336 HIGAMRKEPSVIVSLLTKGACASDLT-LDGRSAVSIC--RRLTRPKDYQAKTEQGKETNK 392 (532)
Q Consensus 336 h~Aa~~~~~~iv~~LL~~gad~~~~d-~~G~TpL~~A--~~~~~~~~~~~~~~~G~~~~~ 392 (532)
|+|+..|+.+++++|+++|++++.++ .+|+||||+| +..++...++.+.+.|.+++.
T Consensus 92 h~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~ 151 (229)
T 2vge_A 92 HCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGL 151 (229)
T ss_dssp HHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCccc
Confidence 99999999999999999999999997 6999999999 888999999999888766543
No 89
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.87 E-value=1.3e-22 Score=186.76 Aligned_cols=114 Identities=22% Similarity=0.283 Sum_probs=105.6
Q ss_pred ccccCCcHHHHHhcCCCHHHHHHHHhcC-C---CCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCcCCC-CCCChHHHHH
Q 009554 264 LREKRIKRIHKALDSDDVELVRLLLSES-E---ITLDEANALHYAAAYCDPKVLSEVLSLGLADVNLRS-SRGYTVLHIG 338 (532)
Q Consensus 264 ~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~---in~~g~t~Lh~A~~~g~~~~v~~LL~~~~advn~~d-~~G~TpLh~A 338 (532)
.+..|.||||+|+..|+.+++++|++ | + .|..|+||||+|+..|+.+++++|+..+ +++|.+| ..|+||||+|
T Consensus 40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~~g~tpL~~A 117 (183)
T 3deo_A 40 VVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAG-ADLDHRDMRGGLTALHMA 117 (183)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCSSSSCCHHHHH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcCCCCCCCCHHHHH
Confidence 36789999999999999999999999 7 4 4588999999999999999999999987 9999998 9999999999
Q ss_pred HHcCCHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCCccc
Q 009554 339 AMRKEPSVIVSLLTKGACASDLTLDGRSAVSICRRLTRPKD 379 (532)
Q Consensus 339 a~~~~~~iv~~LL~~gad~~~~d~~G~TpL~~A~~~~~~~~ 379 (532)
+..|+.+++++|+++|++++.+|.+|+||||+|++.++...
T Consensus 118 ~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~ 158 (183)
T 3deo_A 118 AGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTP 158 (183)
T ss_dssp HHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHTCC
T ss_pred HhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccCcc
Confidence 99999999999999999999999999999999998654433
No 90
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=99.85 E-value=1.9e-21 Score=177.30 Aligned_cols=149 Identities=27% Similarity=0.359 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHhCCCCCccceEEEEcCeeEeeeeeehhhcCHHHHHHHhhccCCCCCCCCCeeecCCCCCCCccCHHHHH
Q 009554 46 NKLSSSLEQLLIDSTCEYSDAEIIVEGIPVCVHRCILAARSKFFYELFKREKGSVDKEGKPKYPMSELLPYGKVGYEAFL 125 (532)
Q Consensus 46 ~~l~~~l~~l~~~~~~~~sDv~i~v~g~~~~~Hr~iLaarS~~F~~~f~~~~~~~~~~~~~~i~l~~l~~~~~v~~~~~~ 125 (532)
+.+.+++.+++.++ .+|||+|.|+|+.|+|||+||+++|+||++||.++|.+. ....|.+++ +++++|.
T Consensus 19 ~~l~~~l~~l~~~~--~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~---~~~~i~l~~------~~~~~f~ 87 (172)
T 3htm_A 19 CRLADELGGLWENS--RFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEES---KKNRVEIND------VEPEVFK 87 (172)
T ss_dssp CCHHHHHHHHHHHT--CSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSCCCGG---GTTEEEECS------SCHHHHH
T ss_pred HHHHHHHHHHHhCC--CCcceEEEECCEEEEeeHHHHHHcCHHHHHHHccCcccc---CCCeEEecC------CCHHHHH
Confidence 47888999999999 999999999999999999999999999999999988773 346889988 8888999
Q ss_pred HHHhhhccCCcCCCCCccccccccccccCCCchhhhhHHHHHHHHHhhCcHHHHHHHHHcCCCcccccCCCCcHHHHHHH
Q 009554 126 IFLSYTYSGKLKPFPMEVSTCVDNICVHDACRPAINFAVEMMYASSIFELPELVSLFQRRLLNFVGKAVAEDIIPILLAA 205 (532)
Q Consensus 126 ~lL~ylYtg~l~~~~~~v~~cvd~~~~h~a~~~~~~~~~~~L~~A~~~~~~~lv~~ll~~~~~i~~~~~~~n~~t~L~~A 205 (532)
.+|+|+|||++.+.... +.++|.+|..++++.+.+.|.+....... ..|+...+.+|
T Consensus 88 ~~l~~~Yt~~~~~~~~~--------------------~~~ll~~A~~~~~~~l~~~c~~~l~~~l~---~~n~~~~~~~A 144 (172)
T 3htm_A 88 EMMCFIYTGKAPNLDKM--------------------ADDLLAAADKYALERLKVMCEDALCSNLS---VENAAEILILA 144 (172)
T ss_dssp HHHHHHHHSCCTTGGGT--------------------HHHHHHHHHHTTCHHHHHHHHHHHHHTCC---TTTHHHHHHHH
T ss_pred HHHHHHhCCCCCCcHHH--------------------HHHHHHHHHHhCcHHHHHHHHHHHHHhCC---HHHHHHHHHHH
Confidence 99999999998765433 48999999999999999998877654333 67889999999
Q ss_pred HHhCcHHHHHcccccccccccCc
Q 009554 206 FHCQLSQLLAQCVDRIVRSDLDT 228 (532)
Q Consensus 206 ~~~~~~~Ll~~~~~~~~~~~~~~ 228 (532)
..++...|.+.|.+++.+++...
T Consensus 145 ~~~~~~~L~~~~~~~i~~~~~~v 167 (172)
T 3htm_A 145 DLHSADQLKTQAVDFINYHATDV 167 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHTC---
T ss_pred HHhCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998876544
No 91
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.84 E-value=2.4e-21 Score=186.99 Aligned_cols=111 Identities=23% Similarity=0.292 Sum_probs=103.5
Q ss_pred ccccCCcHHHHHhcCCCHHHHHHHHhcC-CC---CCCCchHHHHHHHcCCHHHHHHHHHcCCCCCcCCC-CCCChHHHHH
Q 009554 264 LREKRIKRIHKALDSDDVELVRLLLSES-EI---TLDEANALHYAAAYCDPKVLSEVLSLGLADVNLRS-SRGYTVLHIG 338 (532)
Q Consensus 264 ~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~i---n~~g~t~Lh~A~~~g~~~~v~~LL~~~~advn~~d-~~G~TpLh~A 338 (532)
.+..|.||||+|+..|+.+++++|++ | ++ |..|+||||+|+..|+.+++++||..+ +++|.+| ..|+||||+|
T Consensus 41 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~~g~t~L~~A 118 (244)
T 3ui2_A 41 VVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAG-ADLDHRDMRGGLTALHMA 118 (244)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTT-CCTTCCCSSSCCCHHHHH
T ss_pred cccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcC-CCCCcCCCCCCCCHHHHH
Confidence 35689999999999999999999999 7 44 588999999999999999999999987 9999998 8899999999
Q ss_pred HHcCCHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCC
Q 009554 339 AMRKEPSVIVSLLTKGACASDLTLDGRSAVSICRRLTR 376 (532)
Q Consensus 339 a~~~~~~iv~~LL~~gad~~~~d~~G~TpL~~A~~~~~ 376 (532)
+.+|+.+++++|+++|++++.+|..|+||||+|+..++
T Consensus 119 ~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~ 156 (244)
T 3ui2_A 119 AGYVRPEVVEALVELGADIEVEDERGLTALELAREILK 156 (244)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHh
Confidence 99999999999999999999999999999999997543
No 92
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.84 E-value=1.1e-20 Score=161.67 Aligned_cols=122 Identities=26% Similarity=0.323 Sum_probs=106.1
Q ss_pred cCcchhhhcCCcchHHHHHHHHhhcCCCCCCCCccCCcccccCCcHHHHHhcCCCHHHHHHHHhcC-C---CCCCCchHH
Q 009554 226 LDTISIEKELPTEVAEEIRMLRLKSFPDDENTAVEVDPLREKRIKRIHKALDSDDVELVRLLLSES-E---ITLDEANAL 301 (532)
Q Consensus 226 ~~~t~L~~a~~~~~~~~i~~lL~~~~~~~~~~~~~in~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~---in~~g~t~L 301 (532)
+|.|+||.|+..+. .+++++|... + .+++..+..|.||||+|+..|+.+++++|++.| + .|..|.|||
T Consensus 1 ~g~t~L~~A~~~~~-~~~v~~Ll~~--~-----~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l 72 (126)
T 1n0r_A 1 NGRTPLHLAARNGH-LEVVKLLLEA--G-----ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL 72 (126)
T ss_dssp CCCCHHHHHHHHTC-HHHHHHHHHH--T-----CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred CCccHHHHHHHcCc-HHHHHHHHHc--C-----CCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHH
Confidence 36677777777777 4555555332 2 248888999999999999999999999999999 4 457899999
Q ss_pred HHHHHcCCHHHHHHHHHcCCCCCcCCCCCCChHHHHHHHcCCHHHHHHHHhCCCC
Q 009554 302 HYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGAC 356 (532)
Q Consensus 302 h~A~~~g~~~~v~~LL~~~~advn~~d~~G~TpLh~Aa~~~~~~iv~~LL~~gad 356 (532)
|+|+..|+.+++++|+..+ ++++.+|..|+||||+|+..|+.+++++|+++|||
T Consensus 73 ~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 73 HLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp HHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred HHHHHcChHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 9999999999999999987 99999999999999999999999999999999986
No 93
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.83 E-value=1.5e-20 Score=152.74 Aligned_cols=91 Identities=29% Similarity=0.338 Sum_probs=55.4
Q ss_pred CchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCC
Q 009554 297 EANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDLTLDGRSAVSICRRLTR 376 (532)
Q Consensus 297 g~t~Lh~A~~~g~~~~v~~LL~~~~advn~~d~~G~TpLh~Aa~~~~~~iv~~LL~~gad~~~~d~~G~TpL~~A~~~~~ 376 (532)
|+||||+|+..|+.+++++|++.+ +++|.+|..|+||||+|+.+|+.+++++|+++|++++.+|.+|+||||+|+..|+
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~g-~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~ 80 (93)
T 1n0q_A 2 GRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 80 (93)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence 556666666666666666666554 6666666666666666666666666666666666666666666666666666666
Q ss_pred cccHHHHHhcCC
Q 009554 377 PKDYQAKTEQGK 388 (532)
Q Consensus 377 ~~~~~~~~~~G~ 388 (532)
...++.+.+.|+
T Consensus 81 ~~~~~~Ll~~ga 92 (93)
T 1n0q_A 81 LEVVKLLLEAGA 92 (93)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC
Confidence 666665555553
No 94
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.83 E-value=1.3e-20 Score=164.44 Aligned_cols=121 Identities=17% Similarity=0.161 Sum_probs=103.3
Q ss_pred ccCcchhhhcCCcchHHHHHHHHhhcCCCCCCCCccCCcccccCCcHHHHHhcCCCHHHHHHHHhcC-CC---CCCCchH
Q 009554 225 DLDTISIEKELPTEVAEEIRMLRLKSFPDDENTAVEVDPLREKRIKRIHKALDSDDVELVRLLLSES-EI---TLDEANA 300 (532)
Q Consensus 225 ~~~~t~L~~a~~~~~~~~i~~lL~~~~~~~~~~~~~in~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~i---n~~g~t~ 300 (532)
..+.|++|.|+..+. .+++++|.. .+ .++|.+|..|+||||+|+..|+.+++++|++.| ++ |..|.||
T Consensus 12 ~~~~t~l~~A~~~g~-~~~v~~Ll~--~g-----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~ 83 (136)
T 2jab_A 12 SDLGKKLLEAARAGQ-DDEVRILMA--NG-----ADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTP 83 (136)
T ss_dssp CHHHHHHHHHHHHTC-HHHHHHHHH--TT-----CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred ccccHHHHHHHHhCC-HHHHHHHHH--cC-----CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCH
Confidence 345667777777666 445555532 23 358899999999999999999999999999999 54 5789999
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCChHHHHHHHcCCHHHHHHHHhCC
Q 009554 301 LHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKG 354 (532)
Q Consensus 301 Lh~A~~~g~~~~v~~LL~~~~advn~~d~~G~TpLh~Aa~~~~~~iv~~LL~~g 354 (532)
||+|+..|+.++++.|+..+ ++++.+|..|+||||+|+.+|+.+++++|+++|
T Consensus 84 L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 84 LHLAAFIGHLEIAEVLLKHG-ADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HHHHHHcCCHHHHHHHHHcC-CCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 99999999999999999986 999999999999999999999999999999987
No 95
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=99.83 E-value=5.7e-21 Score=185.67 Aligned_cols=173 Identities=20% Similarity=0.233 Sum_probs=136.4
Q ss_pred ccchHHHHHHHHHHHhCCCCCccceEEEEcCeeEeeeeeehhhcCHHHHHHHhhccCCCCCCCCCeeecCCCCCCCccCH
Q 009554 42 VFSLNKLSSSLEQLLIDSTCEYSDAEIIVEGIPVCVHRCILAARSKFFYELFKREKGSVDKEGKPKYPMSELLPYGKVGY 121 (532)
Q Consensus 42 ~~~~~~l~~~l~~l~~~~~~~~sDv~i~v~g~~~~~Hr~iLaarS~~F~~~f~~~~~~~~~~~~~~i~l~~l~~~~~v~~ 121 (532)
..+...+.+.+.+++.++ .+|||+|.|+|+.|+|||+||+++|+||++||.+++.+.. .....|.+++ +++
T Consensus 12 ~~~~~~l~~~l~~l~~~~--~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e-~~~~~i~l~~------v~~ 82 (256)
T 3hve_A 12 PQHAARLLRALSSFREES--RFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDD-GSTYKIELEG------ISV 82 (256)
T ss_dssp TTTHHHHHHHHHTCCC----CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC------------CEEECSS------CCH
T ss_pred hHHHHHHHHHHHHHHhcC--CCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCccc-CCCCeEEeCC------CCH
Confidence 357889999999999999 9999999999999999999999999999999998876310 1345889988 888
Q ss_pred HHHHHHHhhhccCCcCCCCCccccccccccccCCCchhhhhHHHHHHHHHhhCcHHHHHHHHHcCCCcccccCCCCcHHH
Q 009554 122 EAFLIFLSYTYSGKLKPFPMEVSTCVDNICVHDACRPAINFAVEMMYASSIFELPELVSLFQRRLLNFVGKAVAEDIIPI 201 (532)
Q Consensus 122 ~~~~~lL~ylYtg~l~~~~~~v~~cvd~~~~h~a~~~~~~~~~~~L~~A~~~~~~~lv~~ll~~~~~i~~~~~~~n~~t~ 201 (532)
++|..+|+|+|||++.+...+ +.++|.+|..++++++++.|.+....... .+|+...
T Consensus 83 ~~f~~ll~~~Yt~~~~i~~~~--------------------v~~ll~~A~~l~i~~l~~~c~~~L~~~l~---~~n~~~i 139 (256)
T 3hve_A 83 MVMREILDYIFSGQIRLNEDT--------------------IQDVVQAADLLLLTDLKTLCCEFLEGCIA---AENCIGI 139 (256)
T ss_dssp HHHHHHHHHHHHSCCCCC-CC--------------------HHHHHHHHHHHTCHHHHHHHHHHHHHTCC---SSTTHHH
T ss_pred HHHHHHHhhccCCCCcccHhH--------------------HHHHHHHHHHHChHHHHHHHHHHHHhhCC---HhhHHHH
Confidence 999999999999999887655 49999999999999999998877655444 6789999
Q ss_pred HHHHHHhCcHHHHHcccccccccccCcchhhhcCCcchHHHHHHHH
Q 009554 202 LLAAFHCQLSQLLAQCVDRIVRSDLDTISIEKELPTEVAEEIRMLR 247 (532)
Q Consensus 202 L~~A~~~~~~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~i~~lL 247 (532)
+.+|..++...|.+.|.+++..++.....-........ ..+.+++
T Consensus 140 ~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~L~~-~~l~~lL 184 (256)
T 3hve_A 140 RDFALHYCLHHVHYLATEYLETHFRDVSSTEEFLELSP-QKLKEVI 184 (256)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTTCHHHHSSCH-HHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHHHhCCcchhcCCH-HHHHHHH
Confidence 99999999999999999999887765544333334444 5667777
No 96
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.83 E-value=4.6e-21 Score=190.87 Aligned_cols=136 Identities=17% Similarity=0.134 Sum_probs=108.8
Q ss_pred CcchhhhcCCcchHHHHHHHHhhcCCCCCCCCccCCc------ccccCCcHHHHHhcC---CCHHHHHHHHhcC-CC---
Q 009554 227 DTISIEKELPTEVAEEIRMLRLKSFPDDENTAVEVDP------LREKRIKRIHKALDS---DDVELVRLLLSES-EI--- 293 (532)
Q Consensus 227 ~~t~L~~a~~~~~~~~i~~lL~~~~~~~~~~~~~in~------~d~~g~t~Lh~A~~~---g~~~~v~~Ll~~g-~i--- 293 (532)
+.++|+.|+..+....+..++. .+ .+++. .+..|+||||+|+.. |+.+++++|++.| ++
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~---~g-----~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~ 222 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFA---NG-----QDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAK 222 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHH---TT-----CCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCC
T ss_pred hHHHHhhhhhccCHHHHHHHHh---cC-----CcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCC
Confidence 3455666666666455555552 22 23665 588999999999987 8999999999999 54
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCCcHHHHHHH
Q 009554 294 TLDEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDLTLDGRSAVSICRR 373 (532)
Q Consensus 294 n~~g~t~Lh~A~~~g~~~~v~~LL~~~~advn~~d~~G~TpLh~Aa~~~~~~iv~~LL~~gad~~~~d~~G~TpL~~A~~ 373 (532)
|..|+||||+|+..|+.+++++||+.| +|++.+|..|+||||+|+..|+.+++++|+++|++ .|.||||+|+.
T Consensus 223 d~~G~TpLh~A~~~g~~~~v~~Ll~~g-ad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~ 295 (301)
T 2b0o_E 223 AADGNTALHYAALYNQPDCLKLLLKGR-ALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYS 295 (301)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHHHTT-CCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC----
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHh
Confidence 588999999999999999999999986 99999999999999999999999999999999987 58999999998
Q ss_pred cCCc
Q 009554 374 LTRP 377 (532)
Q Consensus 374 ~~~~ 377 (532)
.|+.
T Consensus 296 ~g~~ 299 (301)
T 2b0o_E 296 WVIS 299 (301)
T ss_dssp ----
T ss_pred cCCc
Confidence 7754
No 97
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.83 E-value=2.6e-20 Score=183.30 Aligned_cols=125 Identities=14% Similarity=0.220 Sum_probs=115.4
Q ss_pred cccCCcHHHHHhcCCCHHHHHHHHhcC-CC---------CCCCchHHHHHHHc---CCHHHHHHHHHcCCCCCcCCCCCC
Q 009554 265 REKRIKRIHKALDSDDVELVRLLLSES-EI---------TLDEANALHYAAAY---CDPKVLSEVLSLGLADVNLRSSRG 331 (532)
Q Consensus 265 d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~i---------n~~g~t~Lh~A~~~---g~~~~v~~LL~~~~advn~~d~~G 331 (532)
+....++|+.|+..|+.+.++.|++.| ++ +..|+||||+|+.. |+.+++++||..| +++|.+|..|
T Consensus 127 ~~~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~g-a~in~~d~~g 205 (278)
T 1dcq_A 127 TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNS-GNLDKQTGKG 205 (278)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHC-SCTTCCCTTC
T ss_pred cchhhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCC-CCccccCCCC
Confidence 345568999999999999999999999 43 46799999999999 8999999999997 9999999999
Q ss_pred ChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCCcccHHHHHhcCCcc
Q 009554 332 YTVLHIGAMRKEPSVIVSLLTKGACASDLTLDGRSAVSICRRLTRPKDYQAKTEQGKET 390 (532)
Q Consensus 332 ~TpLh~Aa~~~~~~iv~~LL~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~~G~~~ 390 (532)
+||||+|+.+|+.++|++||++||+++.+|.+|+||||+|+..|+...++.+.+.|+..
T Consensus 206 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 206 STALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR 264 (278)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999988877643
No 98
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.83 E-value=1.9e-21 Score=179.64 Aligned_cols=153 Identities=11% Similarity=0.065 Sum_probs=115.6
Q ss_pred HHHHHHHHhCcHH----HHHccccccccc-ccCcchhhhcCCcchH---HHHHHHHhhcCCCCCCCCccCCcccccCCcH
Q 009554 200 PILLAAFHCQLSQ----LLAQCVDRIVRS-DLDTISIEKELPTEVA---EEIRMLRLKSFPDDENTAVEVDPLREKRIKR 271 (532)
Q Consensus 200 t~L~~A~~~~~~~----Ll~~~~~~~~~~-~~~~t~L~~a~~~~~~---~~i~~lL~~~~~~~~~~~~~in~~d~~g~t~ 271 (532)
++|+.|+..|..+ ++..+ ++.++ ..|.||||.|+..+.. .+++++|+ . .|+ ++|.+|..|+||
T Consensus 8 ~~l~~Aa~~g~~~~~~~l~~~~--~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll-~-~Ga-----dvn~~d~~g~Tp 78 (186)
T 3t8k_A 8 RTVSAAAMLGTYEDFLELFEKG--YEDKESVLKSNILYDVLRNNNDEARYKISMFLI-N-KGA-----DIKSRTKEGTTL 78 (186)
T ss_dssp SSHHHHHHHSCHHHHHHHHHHS--SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHH-H-TTC-----CSSCCCTTCCCT
T ss_pred cHHHHHHHcCCHHHHHHHHhcC--cccccccCCCCHHHHHHHcCCcchHHHHHHHHH-H-CCC-----CCCCCCCCCCcH
Confidence 4456666666533 22222 33333 4577777777766642 25777774 3 343 599999999999
Q ss_pred HHHHhcCCC------HHHHHHHHhcC-CC---CCCCc-hHHHHHHHcCC-----HHHHHHHHHcCCCCCcCCCCCCChHH
Q 009554 272 IHKALDSDD------VELVRLLLSES-EI---TLDEA-NALHYAAAYCD-----PKVLSEVLSLGLADVNLRSSRGYTVL 335 (532)
Q Consensus 272 Lh~A~~~g~------~~~v~~Ll~~g-~i---n~~g~-t~Lh~A~~~g~-----~~~v~~LL~~~~advn~~d~~G~TpL 335 (532)
||+|+..|+ .+++++|+++| ++ |..|+ ||||+|+..+. .++++.||...|+|+|.+|..|+|||
T Consensus 79 Lh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL 158 (186)
T 3t8k_A 79 FFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTAL 158 (186)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHH
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHH
Confidence 999999887 68999999999 55 47888 99999999554 46888888834599999999999999
Q ss_pred HHHHHcCCHHHHHHHHhCCCCCCccC
Q 009554 336 HIGAMRKEPSVIVSLLTKGACASDLT 361 (532)
Q Consensus 336 h~Aa~~~~~~iv~~LL~~gad~~~~d 361 (532)
|+|+..|+.++|++|++...+.+.++
T Consensus 159 ~~A~~~~~~~~v~~L~~~~~~~~~~~ 184 (186)
T 3t8k_A 159 EFVKRCQKPIALKMMEDYIKKYNLKE 184 (186)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhccc
Confidence 99999999999999998766666554
No 99
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.83 E-value=3.4e-22 Score=204.76 Aligned_cols=202 Identities=8% Similarity=-0.042 Sum_probs=110.1
Q ss_pred HHHHHHHHhhCcHHHHHHHHHcCCCcccc-cCCCCcHHHHHHHHHhCcHH----HHHccccc---ccccccCcchhhhcC
Q 009554 164 VEMMYASSIFELPELVSLFQRRLLNFVGK-AVAEDIIPILLAAFHCQLSQ----LLAQCVDR---IVRSDLDTISIEKEL 235 (532)
Q Consensus 164 ~~~L~~A~~~~~~~lv~~ll~~~~~i~~~-~~~~n~~t~L~~A~~~~~~~----Ll~~~~~~---~~~~~~~~t~L~~a~ 235 (532)
.++||.|+..|..++++++++++...... +....+.||||+|+..|+.+ |+++|+++ +..+.. .||||.|+
T Consensus 93 ~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa 171 (376)
T 2aja_A 93 EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAA 171 (376)
T ss_dssp HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHH
Confidence 36667777777777777766666521100 00112356777777666633 55666542 222222 66677666
Q ss_pred CcchHHHHHHHHhhcCCCCCCCCccCCc--ccccCCcHHHHHh-cCCCHHHHHHHHhcCCCCCCCchHHHHHHHcCCHHH
Q 009554 236 PTEVAEEIRMLRLKSFPDDENTAVEVDP--LREKRIKRIHKAL-DSDDVELVRLLLSESEITLDEANALHYAAAYCDPKV 312 (532)
Q Consensus 236 ~~~~~~~i~~lL~~~~~~~~~~~~~in~--~d~~g~t~Lh~A~-~~g~~~~v~~Ll~~g~in~~g~t~Lh~A~~~g~~~~ 312 (532)
..+. .+++++|. . +|+ +++. .|..|+||||+|+ ..|+.++|++|++.|. .|.||||+|+.+|+.++
T Consensus 172 ~~G~-~eiv~~Ll-~-~ga-----~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga---~~~taL~~Aa~~g~~ev 240 (376)
T 2aja_A 172 ENGH-LHVLNRLC-E-LAP-----TEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV---MLAYAEIHEFEYGEKYV 240 (376)
T ss_dssp HTTC-HHHHHHHH-H-SCG-----GGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH---HHHHHHHCTTTTTTTTH
T ss_pred HCCC-HHHHHHHH-H-cCC-----ccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC---ccchHHHHHHHCCCHHH
Confidence 6666 45555552 2 222 3444 5666667777776 6777777777766552 26667777776666666
Q ss_pred HHHHHHcCCCCCcCCCCCCChHHHHHHHcCC---------------------------HHHHHHHHhC---------CCC
Q 009554 313 LSEVLSLGLADVNLRSSRGYTVLHIGAMRKE---------------------------PSVIVSLLTK---------GAC 356 (532)
Q Consensus 313 v~~LL~~~~advn~~d~~G~TpLh~Aa~~~~---------------------------~~iv~~LL~~---------gad 356 (532)
+++|+..+ ++++..+. ++++|+.+|+ .+.+++|++. |++
T Consensus 241 v~lL~~~g-a~~~~~~~----~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~ 315 (376)
T 2aja_A 241 NPFIARHV-NRLKEMHD----AFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATI 315 (376)
T ss_dssp HHHHHHHH-HHHHHHHT----TTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSS
T ss_pred HHHHHhcC-cccccccH----HHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCC
Confidence 66666654 55544321 2222222222 3334444432 232
Q ss_pred CCccCCCCCcHHHHHHHcCCcccHHHHHhc
Q 009554 357 ASDLTLDGRSAVSICRRLTRPKDYQAKTEQ 386 (532)
Q Consensus 357 ~~~~d~~G~TpL~~A~~~~~~~~~~~~~~~ 386 (532)
+ ..+.||||+|++.|+...++.+...
T Consensus 316 ~----n~~~~~L~~A~~~g~~e~v~lLl~~ 341 (376)
T 2aja_A 316 P----GDANELLRLALRLGNQGACALLLSI 341 (376)
T ss_dssp T----TCCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred C----CCccHHHHHHHHcCcHHHHHHHHcC
Confidence 2 2455778888887777777777654
No 100
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.83 E-value=3.1e-20 Score=150.80 Aligned_cols=89 Identities=31% Similarity=0.406 Sum_probs=83.3
Q ss_pred cCCcHHHHHhcCCCHHHHHHHHhcC-C---CCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCChHHHHHHHcC
Q 009554 267 KRIKRIHKALDSDDVELVRLLLSES-E---ITLDEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRK 342 (532)
Q Consensus 267 ~g~t~Lh~A~~~g~~~~v~~Ll~~g-~---in~~g~t~Lh~A~~~g~~~~v~~LL~~~~advn~~d~~G~TpLh~Aa~~~ 342 (532)
+|+||||+|+..|+.+++++|++.| + .|..|+||||+|+..|+.+++++|++.+ ++++.+|..|+||||+|+..|
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~t~l~~A~~~~ 79 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNG 79 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTT
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcC
Confidence 4899999999999999999999999 4 4588999999999999999999999987 999999999999999999999
Q ss_pred CHHHHHHHHhCCCC
Q 009554 343 EPSVIVSLLTKGAC 356 (532)
Q Consensus 343 ~~~iv~~LL~~gad 356 (532)
+.+++++|+++||+
T Consensus 80 ~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 80 HLEVVKLLLEAGAY 93 (93)
T ss_dssp CHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHcCCC
Confidence 99999999999986
No 101
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.82 E-value=6.7e-21 Score=161.06 Aligned_cols=105 Identities=26% Similarity=0.272 Sum_probs=96.9
Q ss_pred cccccCCcHHHHHhcCCCHHHHHHHHhcC-C---CCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCChHHHHH
Q 009554 263 PLREKRIKRIHKALDSDDVELVRLLLSES-E---ITLDEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIG 338 (532)
Q Consensus 263 ~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~---in~~g~t~Lh~A~~~g~~~~v~~LL~~~~advn~~d~~G~TpLh~A 338 (532)
.+|.+|+||||+|+..|+.+++++|++.| + .|..|+||||+|+..|+.+++++|+..+ ++++.+|..|+||||+|
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~d~~g~tpl~~A 82 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG-ADVNARSKDGNTPEHLA 82 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTT-CCTTCCCTTCCCTTHHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcC-CCCcccCCCCCCHHHHH
Confidence 35889999999999999999999999999 4 4588999999999999999999999886 99999999999999999
Q ss_pred HHcCCHHHHHHHHhCCCCCCccCCCCCcHH
Q 009554 339 AMRKEPSVIVSLLTKGACASDLTLDGRSAV 368 (532)
Q Consensus 339 a~~~~~~iv~~LL~~gad~~~~d~~G~TpL 368 (532)
+..|+.+++++|+++|+++|.++..|.||-
T Consensus 83 ~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 83 KKNGHHEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp HTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred HHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence 999999999999999999999999999983
No 102
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=99.82 E-value=6.6e-20 Score=161.72 Aligned_cols=117 Identities=20% Similarity=0.291 Sum_probs=99.3
Q ss_pred cccchHHHHHHHHHHHhCCCCCccceEEEEcCeeEeeeeeehhhcCHHHHHHHhhccCCCCCCCCCeeecCCCCCCCccC
Q 009554 41 EVFSLNKLSSSLEQLLIDSTCEYSDAEIIVEGIPVCVHRCILAARSKFFYELFKREKGSVDKEGKPKYPMSELLPYGKVG 120 (532)
Q Consensus 41 ~~~~~~~l~~~l~~l~~~~~~~~sDv~i~v~g~~~~~Hr~iLaarS~~F~~~f~~~~~~~~~~~~~~i~l~~l~~~~~v~ 120 (532)
+..+.+.+.+.|.+++.++ .+|||+|.|+|+.|+|||+||++||+||++||.++|.+.. .....|.+++ ++
T Consensus 27 ~~~h~~~l~~~l~~l~~~~--~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e-~~~~~I~l~~------v~ 97 (144)
T 2ppi_A 27 DPQHAARLLRALSSFREES--RFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDD-GSTYKIELEG------IS 97 (144)
T ss_dssp CTTHHHHHHHHHHHTTC----CCCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCC------CCCEEECCS------SC
T ss_pred CcchHHHHHHHHHHHHhcC--CCcceEEEECCEEEehHHHHHHHcCHHHHHHHcCCCcccc-CCCcEEEeCC------CC
Confidence 3467899999999999999 9999999999999999999999999999999998876421 1345889988 88
Q ss_pred HHHHHHHHhhhccCCcCCCCCccccccccccccCCCchhhhhHHHHHHHHHhhCcHHHHHHHHHcC
Q 009554 121 YEAFLIFLSYTYSGKLKPFPMEVSTCVDNICVHDACRPAINFAVEMMYASSIFELPELVSLFQRRL 186 (532)
Q Consensus 121 ~~~~~~lL~ylYtg~l~~~~~~v~~cvd~~~~h~a~~~~~~~~~~~L~~A~~~~~~~lv~~ll~~~ 186 (532)
+++|..+|+|+|||++.+...+ +.++|.+|..++++.+++.|.+..
T Consensus 98 ~~~f~~lL~fiYtg~~~i~~~~--------------------v~~ll~~A~~l~i~~L~~~C~~~L 143 (144)
T 2ppi_A 98 VMVMREILDYIFSGQIRLNEDT--------------------IQDVVQAADLLLLTDLKTLCCEFL 143 (144)
T ss_dssp HHHHHHHHHHHTTSCCCCCTTT--------------------HHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCCCCCHHH--------------------HHHHHHHHHHhCcHHHHHHHHHHh
Confidence 8899999999999999876554 499999999999999999998653
No 103
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=99.82 E-value=6.6e-20 Score=158.30 Aligned_cols=113 Identities=19% Similarity=0.301 Sum_probs=102.6
Q ss_pred ccchHHHHHHHHHHHhCCCCCccceEEEEcCeeEeeeeeehhhcCHHHHHHHhhccCCCCCCCCCeeec-CCCCCCCccC
Q 009554 42 VFSLNKLSSSLEQLLIDSTCEYSDAEIIVEGIPVCVHRCILAARSKFFYELFKREKGSVDKEGKPKYPM-SELLPYGKVG 120 (532)
Q Consensus 42 ~~~~~~l~~~l~~l~~~~~~~~sDv~i~v~g~~~~~Hr~iLaarS~~F~~~f~~~~~~~~~~~~~~i~l-~~l~~~~~v~ 120 (532)
..+.+.+.+.|.+++.++ .+|||+|.|+|+.|+|||+||++||+||++||.++|.+ ....|.| ++ ++
T Consensus 10 ~~~~~~l~~~l~~l~~~~--~~~Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~~~~e----~~~~i~l~~~------~~ 77 (127)
T 1r29_A 10 TRHASDVLLNLNRLRSRD--ILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKR----NLSVINLDPE------IN 77 (127)
T ss_dssp TTHHHHHHHHHHHHHHTT--CSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTT----TCSEEECCTT------SC
T ss_pred hhHHHHHHHHHHHHHhcC--CCCCEEEEECCEEEehHHHHHHHhCHHHHHHhcCCccC----CCCEEEeCCC------CC
Confidence 357889999999999999 99999999999999999999999999999999998876 5678999 66 88
Q ss_pred HHHHHHHHhhhccCCcCCCCCccccccccccccCCCchhhhhHHHHHHHHHhhCcHHHHHHHHHcC
Q 009554 121 YEAFLIFLSYTYSGKLKPFPMEVSTCVDNICVHDACRPAINFAVEMMYASSIFELPELVSLFQRRL 186 (532)
Q Consensus 121 ~~~~~~lL~ylYtg~l~~~~~~v~~cvd~~~~h~a~~~~~~~~~~~L~~A~~~~~~~lv~~ll~~~ 186 (532)
+++|..+|+|+|||++.+...+ +.++|.+|..++++.+++.|.+..
T Consensus 78 ~~~f~~ll~~~Ytg~~~~~~~~--------------------~~~ll~~A~~~~i~~L~~~c~~~l 123 (127)
T 1r29_A 78 PEGFNILLDFMYTSRLNLREGN--------------------IMAVMATAMYLQMEHVVDTCRKFI 123 (127)
T ss_dssp HHHHHHHHHHHHHSCCCCCTTT--------------------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcCcCHHH--------------------HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999999999999886554 499999999999999999987654
No 104
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=99.82 E-value=8.3e-21 Score=167.93 Aligned_cols=135 Identities=26% Similarity=0.367 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHhCCCCCccceEEEEcCeeEeeeeeehhhcCHHHHHHHhhccCCCCCCCCCeeecCCCCCCCccCHHHHH
Q 009554 46 NKLSSSLEQLLIDSTCEYSDAEIIVEGIPVCVHRCILAARSKFFYELFKREKGSVDKEGKPKYPMSELLPYGKVGYEAFL 125 (532)
Q Consensus 46 ~~l~~~l~~l~~~~~~~~sDv~i~v~g~~~~~Hr~iLaarS~~F~~~f~~~~~~~~~~~~~~i~l~~l~~~~~v~~~~~~ 125 (532)
+.+.+++.+++.++ .+|||+|.|+|+.|+|||+||++||+||++||.++|.+. ....|.+++ +++++|.
T Consensus 10 ~~l~~~l~~l~~~~--~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~---~~~~i~l~~------~~~~~~~ 78 (145)
T 4eoz_A 10 CRLADELGGLWENS--RFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEES---KKNRVEIND------VEPEVFK 78 (145)
T ss_dssp CCHHHHHHHHHHHT--CSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSSSHHH---HHTEEEECS------SCHHHHH
T ss_pred HHHHHHHHHHHhCC--CCcceEEEECCEEEEeehHHHHHcCHHHHHHHcCCCcCC---CCceEEecC------CCHHHHH
Confidence 46888999999999 999999999999999999999999999999999887652 235888888 8888999
Q ss_pred HHHhhhccCCcCCCCCccccccccccccCCCchhhhhHHHHHHHHHhhCcHHHHHHHHHcCCCcccccCCCCcHHHHHHH
Q 009554 126 IFLSYTYSGKLKPFPMEVSTCVDNICVHDACRPAINFAVEMMYASSIFELPELVSLFQRRLLNFVGKAVAEDIIPILLAA 205 (532)
Q Consensus 126 ~lL~ylYtg~l~~~~~~v~~cvd~~~~h~a~~~~~~~~~~~L~~A~~~~~~~lv~~ll~~~~~i~~~~~~~n~~t~L~~A 205 (532)
.+|+|+|||++.+.... +.+++.+|..++++.+++.|.+....... .+|+...+.+|
T Consensus 79 ~~l~~~Y~~~~~~~~~~--------------------~~~ll~~A~~~~~~~l~~~c~~~l~~~l~---~~n~~~~l~~A 135 (145)
T 4eoz_A 79 EMMCFIYTGKAPNLDKM--------------------ADDLLAAADKYALERLKVMCEDALCSNLS---VENAAEILILA 135 (145)
T ss_dssp HHHHHHHHSCCTTGGGT--------------------HHHHHHHHHHTTCHHHHHHHHCC--------------------
T ss_pred HHHHhhccCccCCcHHH--------------------HHHHHHHHHHhCHHHHHHHHHHHHHHhCC---HHHHHHHHHHH
Confidence 99999999998765433 48999999999999999999988776544 67888999999
Q ss_pred HHhCcHHHH
Q 009554 206 FHCQLSQLL 214 (532)
Q Consensus 206 ~~~~~~~Ll 214 (532)
..++..+|.
T Consensus 136 ~~~~~~~Lk 144 (145)
T 4eoz_A 136 DLHSADQLK 144 (145)
T ss_dssp ---------
T ss_pred HHhCHHHhc
Confidence 999887764
No 105
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.82 E-value=5.4e-20 Score=187.71 Aligned_cols=122 Identities=18% Similarity=0.145 Sum_probs=113.0
Q ss_pred cccCCcHHHHHhcC-CCHHHHHHHHhcC-CCC-----CCCchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCChHHHH
Q 009554 265 REKRIKRIHKALDS-DDVELVRLLLSES-EIT-----LDEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHI 337 (532)
Q Consensus 265 d~~g~t~Lh~A~~~-g~~~~v~~Ll~~g-~in-----~~g~t~Lh~A~~~g~~~~v~~LL~~~~advn~~d~~G~TpLh~ 337 (532)
+..+.|+||+|+.. |+.+++++|+++| ++| ..|.||||+|+..|+.+++++||..+ +++|.+|..|+||||+
T Consensus 196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~G-advn~~d~~G~TpLh~ 274 (368)
T 3jue_A 196 SLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNG-ANVNQADSAGRGPLHH 274 (368)
T ss_dssp -CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHH
T ss_pred cCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcC-CCCCCCCCCCCCHHHH
Confidence 44567999999999 9999999999999 544 67999999999999999999999986 9999999999999999
Q ss_pred HHHcCCHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCCcccHHHHHhcC
Q 009554 338 GAMRKEPSVIVSLLTKGACASDLTLDGRSAVSICRRLTRPKDYQAKTEQG 387 (532)
Q Consensus 338 Aa~~~~~~iv~~LL~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~~G 387 (532)
|+..|+.+++++||++|++++.+|.+|+||||+|+..++...++.+...|
T Consensus 275 A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~ 324 (368)
T 3jue_A 275 ATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAK 324 (368)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999888888877655
No 106
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.82 E-value=5e-20 Score=196.35 Aligned_cols=123 Identities=19% Similarity=0.252 Sum_probs=113.0
Q ss_pred CcHHHHHhcCCCHHHHHHHHhcC-CC---------CCCCchHHHHHHH---cCCHHHHHHHHHcCCCCCcCCCCCCChHH
Q 009554 269 IKRIHKALDSDDVELVRLLLSES-EI---------TLDEANALHYAAA---YCDPKVLSEVLSLGLADVNLRSSRGYTVL 335 (532)
Q Consensus 269 ~t~Lh~A~~~g~~~~v~~Ll~~g-~i---------n~~g~t~Lh~A~~---~g~~~~v~~LL~~~~advn~~d~~G~TpL 335 (532)
.+.||.|+..|+.++|+.||+.| ++ |..|+||||+|+. .|+.+++++||..| +|+|.+|..|+|||
T Consensus 133 ~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~g-a~vn~~d~~g~TpL 211 (497)
T 3lvq_E 133 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNG-GHLDAKAADGNTAL 211 (497)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHS-CCTTCCCSSSCCHH
T ss_pred HHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcC-CCCCccCCCCCcHH
Confidence 37899999999999999999999 54 4679999999976 89999999999987 99999999999999
Q ss_pred HHHHHcCCHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCCcccHHHHHhcCCcccc
Q 009554 336 HIGAMRKEPSVIVSLLTKGACASDLTLDGRSAVSICRRLTRPKDYQAKTEQGKETNK 392 (532)
Q Consensus 336 h~Aa~~~~~~iv~~LL~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~~G~~~~~ 392 (532)
|+|+.+|+.++|++||++|||++.+|.+|+||||+|+..|+...++.+.+.|+.++.
T Consensus 212 h~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~ 268 (497)
T 3lvq_E 212 HYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFA 268 (497)
T ss_dssp HHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC----
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCC
Confidence 999999999999999999999999999999999999999999999999999988664
No 107
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=99.81 E-value=6.3e-20 Score=156.80 Aligned_cols=112 Identities=22% Similarity=0.330 Sum_probs=97.6
Q ss_pred cchHHHHHHHHHHHhCCCCCccceEEEEcCeeEeeeeeehhhcCHHHHHHHhhccCCCCCCCCCeeecCCCCCCCccCHH
Q 009554 43 FSLNKLSSSLEQLLIDSTCEYSDAEIIVEGIPVCVHRCILAARSKFFYELFKREKGSVDKEGKPKYPMSELLPYGKVGYE 122 (532)
Q Consensus 43 ~~~~~l~~~l~~l~~~~~~~~sDv~i~v~g~~~~~Hr~iLaarS~~F~~~f~~~~~~~~~~~~~~i~l~~l~~~~~v~~~ 122 (532)
.|.+.+.+.+.+++.++ .+|||+|.|+|+.|+|||+||++||+||++||.++|.++ ....|.+++ ++++
T Consensus 7 ~h~~~l~~~l~~l~~~~--~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~---~~~~i~l~~------~~~~ 75 (120)
T 2if5_A 7 DHSSDILSGLNEQRTQG--LLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVD---QQNVYEIDF------VSAE 75 (120)
T ss_dssp THHHHHHHHHHHHHHTT--CSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHC--------CCSEEECCS------SCHH
T ss_pred chHHHHHHHHHHHHhcC--CCCCeEEEECCEEEeHHHHHHHHhCHHHHHHhcCCcccc---CCceEEeCC------CCHH
Confidence 57889999999999999 999999999999999999999999999999999988773 456888987 8888
Q ss_pred HHHHHHhhhccCCcCCCCCccccccccccccCCCchhhhhHHHHHHHHHhhCcHHHHHHHHHc
Q 009554 123 AFLIFLSYTYSGKLKPFPMEVSTCVDNICVHDACRPAINFAVEMMYASSIFELPELVSLFQRR 185 (532)
Q Consensus 123 ~~~~lL~ylYtg~l~~~~~~v~~cvd~~~~h~a~~~~~~~~~~~L~~A~~~~~~~lv~~ll~~ 185 (532)
+|..+|+|+|||++.+...+ +.+++.+|..++++.+++.|.+.
T Consensus 76 ~f~~ll~~~Yt~~~~~~~~~--------------------~~~ll~~A~~~~i~~L~~~C~~~ 118 (120)
T 2if5_A 76 ALTALMDFAYTATLTVSTAN--------------------VGDILSAARLLEIPAVSHVCADL 118 (120)
T ss_dssp HHHHHHHHHHHSCCCCCGGG--------------------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCccCHHH--------------------HHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999999999998876544 59999999999999999998764
No 108
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=99.81 E-value=9.5e-21 Score=186.50 Aligned_cols=177 Identities=19% Similarity=0.164 Sum_probs=142.9
Q ss_pred ccchHHHHHHHHHHHhCCCCCccceEEEEc---CeeEeeeeeehhhcCHHHHHHHhhccCCCCCCCCCeeecCCCCCCCc
Q 009554 42 VFSLNKLSSSLEQLLIDSTCEYSDAEIIVE---GIPVCVHRCILAARSKFFYELFKREKGSVDKEGKPKYPMSELLPYGK 118 (532)
Q Consensus 42 ~~~~~~l~~~l~~l~~~~~~~~sDv~i~v~---g~~~~~Hr~iLaarS~~F~~~f~~~~~~~~~~~~~~i~l~~l~~~~~ 118 (532)
..|.+.+.+.+.+++.++ .+|||+|.|+ |+.|+|||+||+++|+||++||.++|.|+ ....|.++++....+
T Consensus 13 ~~h~~~ll~~l~~l~~~~--~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~---~~~~i~l~~~~~~~~ 87 (279)
T 3i3n_A 13 SSHCSELSWRQNEQRRQG--LFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSES---RSGRVEMRKWSSEPG 87 (279)
T ss_dssp TTHHHHHHHHHHHHHHHT--TTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC-----------EEECCCCSSTTC
T ss_pred HhHHHHHHHHHHHHHhcC--CCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccc---cCCeEEeccccccCC
Confidence 358899999999999999 9999999998 99999999999999999999999998873 345899986655445
Q ss_pred cCHHHHHHHHhhhccCCcCCCCCccccccccccccCCCchhhhhHHHHHHHHHhhCcHHHHHHHHHcCCCcccccCCCCc
Q 009554 119 VGYEAFLIFLSYTYSGKLKPFPMEVSTCVDNICVHDACRPAINFAVEMMYASSIFELPELVSLFQRRLLNFVGKAVAEDI 198 (532)
Q Consensus 119 v~~~~~~~lL~ylYtg~l~~~~~~v~~cvd~~~~h~a~~~~~~~~~~~L~~A~~~~~~~lv~~ll~~~~~i~~~~~~~n~ 198 (532)
+++++|..+|+|+|||++.+...+ +.++|.+|..++++.+++.|.+....... .+|+
T Consensus 88 v~~~~f~~ll~~~Ytg~~~i~~~~--------------------v~~ll~~A~~l~i~~L~~~c~~~L~~~l~---~~n~ 144 (279)
T 3i3n_A 88 PEPDTVEAVIEYMYTGRIRVSTGS--------------------VHEVLELADRFLLIRLKEFCGEFLKKKLH---LSNC 144 (279)
T ss_dssp SCHHHHHHHHHHHHHSEEEEETTT--------------------HHHHHHHHHHTTCHHHHHHHHHHHHHHCC---TTTH
T ss_pred CCHHHHHHHHHhhCcCCcccCHHH--------------------HHHHHHHHHHHCcHHHHHHHHHHHHHcCC---cchH
Confidence 999999999999999999876655 48999999999999999998877665444 6789
Q ss_pred HHHHHHHHHhCcHHHHHcccccccccccCcchhhhcCCcchHHHHHHHH
Q 009554 199 IPILLAAFHCQLSQLLAQCVDRIVRSDLDTISIEKELPTEVAEEIRMLR 247 (532)
Q Consensus 199 ~t~L~~A~~~~~~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~i~~lL 247 (532)
...+.+|..++...|.+.|.+++..++.....-........ ..+.++|
T Consensus 145 ~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~L~~-~~l~~lL 192 (279)
T 3i3n_A 145 VAIHSLAHMYTLSQLALKAADMIRRNFHKVIQDEEFYTLPF-HLIRDWL 192 (279)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTHHHHTTSSGGGGSCH-HHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCcChhcCCH-HHHHHHh
Confidence 99999999999999999999999887765544333333444 6677777
No 109
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.81 E-value=1.2e-21 Score=200.55 Aligned_cols=221 Identities=8% Similarity=-0.043 Sum_probs=144.7
Q ss_pred ccccccccccCCCc---hhh-hhHHHHHHHHHhhCcHHHHHHHHHcCCCcccccCCCCcHHHHHHHHHhCcHH----HHH
Q 009554 144 STCVDNICVHDACR---PAI-NFAVEMMYASSIFELPELVSLFQRRLLNFVGKAVAEDIIPILLAAFHCQLSQ----LLA 215 (532)
Q Consensus 144 ~~cvd~~~~h~a~~---~~~-~~~~~~L~~A~~~~~~~lv~~ll~~~~~i~~~~~~~n~~t~L~~A~~~~~~~----Ll~ 215 (532)
..+++.++.+++.. ..+ ....++||+|+..|..+++++|+++++++...+......||||+|+..|+.+ |++
T Consensus 105 ~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~~TpLh~Aa~~G~~eiv~~Ll~ 184 (376)
T 2aja_A 105 SSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCE 184 (376)
T ss_dssp HHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence 35678888888722 111 2346799999999999999999999975221111111189999999999854 889
Q ss_pred ccccccc--ccccCcchhhhcC-CcchHHHHHHHHhhcCCCCCCCCccCCcccccCCcHHHHHhcCCCHHHHHHHHhcC-
Q 009554 216 QCVDRIV--RSDLDTISIEKEL-PTEVAEEIRMLRLKSFPDDENTAVEVDPLREKRIKRIHKALDSDDVELVRLLLSES- 291 (532)
Q Consensus 216 ~~~~~~~--~~~~~~t~L~~a~-~~~~~~~i~~lL~~~~~~~~~~~~~in~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g- 291 (532)
+|++++. .+..|.||||.|+ ..+. .+++++|. . .| ..|.||||+|+..|+.+++++|++.|
T Consensus 185 ~ga~~~~~~~d~~g~TpL~~Aa~~~G~-~eiv~~Ll-~-~g------------a~~~taL~~Aa~~g~~evv~lL~~~ga 249 (376)
T 2aja_A 185 LAPTEATAMIQAENYYAFRWAAVGRGH-HNVINFLL-D-CP------------VMLAYAEIHEFEYGEKYVNPFIARHVN 249 (376)
T ss_dssp SCGGGHHHHHHHHHHHHHHHHHSTTCC-HHHHHHHT-T-SH------------HHHHHHHHCTTTTTTTTHHHHHHHHHH
T ss_pred cCCccchhccCCCCCCHHHHHHHHCCC-HHHHHHHH-h-CC------------CccchHHHHHHHCCCHHHHHHHHhcCc
Confidence 9999887 8888999999999 9999 78888883 2 22 24899999999999999999999998
Q ss_pred CCCCCCchHHHHHHHcCC---------------------------HHHHHHHHHcCCCC----CcCCCCCCChHHHHHHH
Q 009554 292 EITLDEANALHYAAAYCD---------------------------PKVLSEVLSLGLAD----VNLRSSRGYTVLHIGAM 340 (532)
Q Consensus 292 ~in~~g~t~Lh~A~~~g~---------------------------~~~v~~LL~~~~ad----vn~~d~~G~TpLh~Aa~ 340 (532)
+++. ..+++++|+..|+ .+.+++|+..+++. .......+.||||+|+.
T Consensus 250 ~~~~-~~~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~ 328 (376)
T 2aja_A 250 RLKE-MHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALR 328 (376)
T ss_dssp HHHH-HHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHH
T ss_pred cccc-ccHHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHH
Confidence 3321 1123444444333 44555555533111 11223456799999999
Q ss_pred cCCHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCCcccHHHH
Q 009554 341 RKEPSVIVSLLTKGACASDLTLDGRSAVSICRRLTRPKDYQAK 383 (532)
Q Consensus 341 ~~~~~iv~~LL~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~ 383 (532)
.|+.+++++|++.| ..++..|+||+.+|...|+.+.++.-
T Consensus 329 ~g~~e~v~lLl~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~ 368 (376)
T 2aja_A 329 LGNQGACALLLSIP---SVLALTKANNYYINETGGRLDLRAVA 368 (376)
T ss_dssp HTCTTHHHHHTTSH---HHHHSCC-------------------
T ss_pred cCcHHHHHHHHcCh---HHHHHHHHhccccccccccccHHHHH
Confidence 99999999999875 67788999999999998877666543
No 110
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.81 E-value=8.6e-20 Score=181.64 Aligned_cols=120 Identities=18% Similarity=0.266 Sum_probs=111.6
Q ss_pred CCcHHHHHhcCCCHHHHHHHHhcC-CC---------CCCCchHHHHHHHc---CCHHHHHHHHHcCCCCCcCCCCCCChH
Q 009554 268 RIKRIHKALDSDDVELVRLLLSES-EI---------TLDEANALHYAAAY---CDPKVLSEVLSLGLADVNLRSSRGYTV 334 (532)
Q Consensus 268 g~t~Lh~A~~~g~~~~v~~Ll~~g-~i---------n~~g~t~Lh~A~~~---g~~~~v~~LL~~~~advn~~d~~G~Tp 334 (532)
..++||.|+..|+.+.++.|++.| ++ +..|+||||+|+.. |+.+++++||..+ +++|.+|..|+||
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~g-advn~~d~~G~Tp 229 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNG-GHLDAKAADGNTA 229 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHS-SCTTCCCTTCCCH
T ss_pred hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcC-CCCCCCCCCCCCH
Confidence 457899999999999999999999 53 56899999999997 8999999999997 9999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCCcccHHHHHhcCC
Q 009554 335 LHIGAMRKEPSVIVSLLTKGACASDLTLDGRSAVSICRRLTRPKDYQAKTEQGK 388 (532)
Q Consensus 335 Lh~Aa~~~~~~iv~~LL~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~~G~ 388 (532)
||+|+..|+.+++++||++||+++.+|.+|+||||+|+..++...++.+.+.|.
T Consensus 230 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga 283 (301)
T 2b0o_E 230 LHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQA 283 (301)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999988888887654
No 111
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=99.80 E-value=8.4e-20 Score=159.29 Aligned_cols=112 Identities=21% Similarity=0.264 Sum_probs=98.2
Q ss_pred ccchHHHHHHHHHHHhCCCCCccceEEEEcCeeEeeeeeehhhcCHHHHHHHhhccCCCCCCCCCeeecCCCCCCCccCH
Q 009554 42 VFSLNKLSSSLEQLLIDSTCEYSDAEIIVEGIPVCVHRCILAARSKFFYELFKREKGSVDKEGKPKYPMSELLPYGKVGY 121 (532)
Q Consensus 42 ~~~~~~l~~~l~~l~~~~~~~~sDv~i~v~g~~~~~Hr~iLaarS~~F~~~f~~~~~~~~~~~~~~i~l~~l~~~~~v~~ 121 (532)
..|...+.+.|.+++.++ .+|||+|.|+|+.|+|||+||++||+||++||.+++ ...|.+++ +++
T Consensus 6 ~~h~~~l~~~l~~l~~~~--~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~-------~~~i~l~~------~~~ 70 (135)
T 2yy9_A 6 SGHSVRVLQELNKQREKG--QYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGT-------GGSVVLPA------GFA 70 (135)
T ss_dssp -CHHHHHHHHHHHHHHTT--TTCCEEEEETTEEEEECHHHHHHHCHHHHHTCC-----------CCEEECG------GGH
T ss_pred ccHHHHHHHHHHHHHhcC--CCcceEEEECCEEEehHHHHHHHhCHHHHHHHcCCC-------CCeEEeCC------CCH
Confidence 458899999999999999 999999999999999999999999999999998865 24688887 888
Q ss_pred HHHHHHHhhhccCCcCCCCCccccccccccccCCCchhhhhHHHHHHHHHhhCcHHHHHHHHHcCCC
Q 009554 122 EAFLIFLSYTYSGKLKPFPMEVSTCVDNICVHDACRPAINFAVEMMYASSIFELPELVSLFQRRLLN 188 (532)
Q Consensus 122 ~~~~~lL~ylYtg~l~~~~~~v~~cvd~~~~h~a~~~~~~~~~~~L~~A~~~~~~~lv~~ll~~~~~ 188 (532)
++|+.+|+|+|||++.+...+ +.++|.+|..+++..+++.|.+....
T Consensus 71 ~~f~~lL~fiYtg~~~i~~~~--------------------v~~ll~~A~~l~i~~L~~~C~~~l~~ 117 (135)
T 2yy9_A 71 EIFGLLLDFFYTGHLALTSGN--------------------RDQVLLAAKELRVPEAVELCQSFQPQ 117 (135)
T ss_dssp HHHHHHHHHHHHSCCCCCTTT--------------------HHHHHHHHHHTTCHHHHHHHHHCCC-
T ss_pred HHHHHHHHHHhCCCCCCCHHH--------------------HHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 899999999999999887655 49999999999999999999988765
No 112
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.80 E-value=1.6e-20 Score=163.92 Aligned_cols=130 Identities=15% Similarity=0.110 Sum_probs=105.4
Q ss_pred ccccccccccCcchhhhcCCcchHHHHHHHHhhcCCCCCCCCccCCcccccCCcHHHHHhcCCCHHHHHHHHhcC-CC--
Q 009554 217 CVDRIVRSDLDTISIEKELPTEVAEEIRMLRLKSFPDDENTAVEVDPLREKRIKRIHKALDSDDVELVRLLLSES-EI-- 293 (532)
Q Consensus 217 ~~~~~~~~~~~~t~L~~a~~~~~~~~i~~lL~~~~~~~~~~~~~in~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~i-- 293 (532)
|+++ .++..|.|+||.|+..+. .+++++|+. .+ .+++.+|..|+||||+|+..|+.+++++|++.| ++
T Consensus 1 G~d~-~~~~~g~t~L~~A~~~~~-~~~~~~Ll~--~g-----~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~ 71 (137)
T 3c5r_A 1 GIDP-FTNHRGETLLHIASIKGD-IPSVEYLLQ--NG-----SDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNT 71 (137)
T ss_dssp ---C-CCCTTCCCHHHHHHHHTC-HHHHHHHHH--TT-----CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred CCCC-CcCCCCCCHHHHHHHcCC-HHHHHHHHH--cC-----CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccC
Confidence 4555 567788888888888887 455555532 23 358899999999999999999999999999999 44
Q ss_pred -CCCCchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCChHHHHHHHcCCHHHHHHHHhCCCC
Q 009554 294 -TLDEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGAC 356 (532)
Q Consensus 294 -n~~g~t~Lh~A~~~g~~~~v~~LL~~~~advn~~d~~G~TpLh~Aa~~~~~~iv~~LL~~gad 356 (532)
|..|.||||+|+..|+.+++++|+..+ ++++.+|..|+||||+|+..+..+++++|.+.+..
T Consensus 72 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~s 134 (137)
T 3c5r_A 72 TGYQNDSPLHDAAKNGHVDIVKLLLSYG-ASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS 134 (137)
T ss_dssp CCGGGCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCGGGGCCCHHHHHHHSCC------
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHhhccHHHHHhhccccccC
Confidence 577899999999999999999999986 99999999999999999999999999888876543
No 113
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=99.80 E-value=1.4e-19 Score=154.38 Aligned_cols=111 Identities=23% Similarity=0.278 Sum_probs=99.4
Q ss_pred cchHHHHHHHHHHHhCCCCCccceEEEEcCeeEeeeeeehhhcCHHHHHHHhhccCCCCCCCCCeeecCCCCCCCccCHH
Q 009554 43 FSLNKLSSSLEQLLIDSTCEYSDAEIIVEGIPVCVHRCILAARSKFFYELFKREKGSVDKEGKPKYPMSELLPYGKVGYE 122 (532)
Q Consensus 43 ~~~~~l~~~l~~l~~~~~~~~sDv~i~v~g~~~~~Hr~iLaarS~~F~~~f~~~~~~~~~~~~~~i~l~~l~~~~~v~~~ 122 (532)
.+.+.+.+.+.+++.++ .+|||+|.++|++|+|||+||++||+||++||.+++ ...|.+++ ++++
T Consensus 6 ~h~~~l~~~l~~l~~~~--~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~-------~~~i~l~~------~~~~ 70 (119)
T 3b84_A 6 QHSVRVLQELNKQREKG--QYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGS-------GGSVVLPA------GFAE 70 (119)
T ss_dssp HHHHHHHHHHHHHHHHT--CSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTTT-------CCCEEECG------GGHH
T ss_pred hHHHHHHHHHHHHHhcC--CCcceEEEECCEEEEeeHHHHhhcCHHHHHHHCCCC-------CCeEEeCC------CCHH
Confidence 57889999999999999 999999999999999999999999999999998864 35788887 8888
Q ss_pred HHHHHHhhhccCCcCCCCCccccccccccccCCCchhhhhHHHHHHHHHhhCcHHHHHHHHHcCCC
Q 009554 123 AFLIFLSYTYSGKLKPFPMEVSTCVDNICVHDACRPAINFAVEMMYASSIFELPELVSLFQRRLLN 188 (532)
Q Consensus 123 ~~~~lL~ylYtg~l~~~~~~v~~cvd~~~~h~a~~~~~~~~~~~L~~A~~~~~~~lv~~ll~~~~~ 188 (532)
+|+.+|+|+|||++.+...+ +.++|.+|..++++++++.|.+....
T Consensus 71 ~f~~ll~~iYtg~~~~~~~~--------------------v~~ll~~A~~~~i~~L~~~C~~~l~~ 116 (119)
T 3b84_A 71 IFGLLLDFFYTGHLALTSGN--------------------RDQVLLAARELRVPEAVELCQSFKPK 116 (119)
T ss_dssp HHHHHHHHHHHSCCCCCTTT--------------------HHHHHHHHHHTTCHHHHHHHHHCC--
T ss_pred HHHHHHHHHcCCCCccCHHH--------------------HHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 99999999999999887655 48999999999999999999887654
No 114
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.80 E-value=3.1e-20 Score=176.10 Aligned_cols=133 Identities=15% Similarity=0.086 Sum_probs=99.0
Q ss_pred cccCcchhhhcCCcchHHHHHHHHhhcCCCCCCCCccCCcccccCCcHHHHHhcCCCHHHHHHHHhc-C-C---CCCCCc
Q 009554 224 SDLDTISIEKELPTEVAEEIRMLRLKSFPDDENTAVEVDPLREKRIKRIHKALDSDDVELVRLLLSE-S-E---ITLDEA 298 (532)
Q Consensus 224 ~~~~~t~L~~a~~~~~~~~i~~lL~~~~~~~~~~~~~in~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~-g-~---in~~g~ 298 (532)
+..|.|+||.|+..+. .+++++|+. .+ .++|.+|..|+||||+|+..|+.++|++|++. | + .|..|+
T Consensus 70 ~~~g~t~L~~A~~~g~-~~~v~~Ll~--~g-----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~ 141 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGN-LSWLRECLD--NR-----VGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGD 141 (222)
T ss_dssp EEEESCHHHHHHHHTC-HHHHHHHHH--TT-----CCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSC
T ss_pred ccccccccccccccCc-HHHHHHHHh--CC-----CCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCC
Confidence 4456667777766666 344444422 23 35889999999999999999999999999998 6 4 468899
Q ss_pred hHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCC
Q 009554 299 NALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDLTLDGR 365 (532)
Q Consensus 299 t~Lh~A~~~g~~~~v~~LL~~~~advn~~d~~G~TpLh~Aa~~~~~~iv~~LL~~gad~~~~d~~G~ 365 (532)
||||+|+..|+.+++++||..| ++++.+|..|+||||+|+..|+.++++.|++.|++.+..|.+|+
T Consensus 142 tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~~ 207 (222)
T 3ehr_A 142 TALHAAAWKGYADIVQLLLAKG-ARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDY 207 (222)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHT-CCSCCCCTTSCCHHHHCCSHHHHHHHC-----------------
T ss_pred CHHHHHHHcCCHHHHHHHHHcC-CCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhhh
Confidence 9999999999999999999996 99999999999999999999999999999999999988776654
No 115
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=99.79 E-value=2.3e-19 Score=152.28 Aligned_cols=109 Identities=18% Similarity=0.314 Sum_probs=97.0
Q ss_pred cchHHHHHHHHHHHhCCCCCccceEEEEcCeeEeeeeeehhhcCHHHHHHHhhccCCCCCCCCCeeecC--CCCCCCccC
Q 009554 43 FSLNKLSSSLEQLLIDSTCEYSDAEIIVEGIPVCVHRCILAARSKFFYELFKREKGSVDKEGKPKYPMS--ELLPYGKVG 120 (532)
Q Consensus 43 ~~~~~l~~~l~~l~~~~~~~~sDv~i~v~g~~~~~Hr~iLaarS~~F~~~f~~~~~~~~~~~~~~i~l~--~l~~~~~v~ 120 (532)
.|.+.+.+.+.+++.++ .+|||+|.|+|+.|+|||+||++||+||++||.++ +...|.++ + ++
T Consensus 4 ~h~~~l~~~l~~l~~~~--~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~-------~~~~i~l~~~~------~~ 68 (116)
T 2vpk_A 4 HHCEHLLERLNKQREAG--FLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRST-------SENNVFLDQSQ------VK 68 (116)
T ss_dssp HHHHHHHHHHHHHHHHT--CSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTC-------CCSCEECCTTT------CC
T ss_pred hHHHHHHHHHHHHHhcC--CCCcEEEEECCEEEeccHHHHhhcCHHHHHHHcCC-------CCCeEEeecCC------CC
Confidence 47789999999999999 99999999999999999999999999999999875 23456666 6 88
Q ss_pred HHHHHHHHhhhccCCcCCCCCccccccccccccCCCchhhhhHHHHHHHHHhhCcHHHHHHHHHcC
Q 009554 121 YEAFLIFLSYTYSGKLKPFPMEVSTCVDNICVHDACRPAINFAVEMMYASSIFELPELVSLFQRRL 186 (532)
Q Consensus 121 ~~~~~~lL~ylYtg~l~~~~~~v~~cvd~~~~h~a~~~~~~~~~~~L~~A~~~~~~~lv~~ll~~~ 186 (532)
+++|..+|+|+|||++.+.+.+ +.++|.+|..++++.+++.|.+..
T Consensus 69 ~~~f~~ll~~~Yt~~~~~~~~~--------------------v~~ll~~A~~~~i~~L~~~C~~~l 114 (116)
T 2vpk_A 69 ADGFQKLLEFIYTGTLNLDSWN--------------------VKEIHQAADYLKVEEVVTKCKIKM 114 (116)
T ss_dssp HHHHHHHHHHHHHSCCCCCTTT--------------------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccCHHH--------------------HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999999999999886655 499999999999999999987653
No 116
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=99.79 E-value=4.5e-19 Score=155.36 Aligned_cols=114 Identities=18% Similarity=0.220 Sum_probs=101.8
Q ss_pred cchHHHHHHHHHHHhCCCCCccceEEEEcCeeEeeeeeehhhcCHHHHHHHhhccCCCCCCCCCeeecCCCCCCCccCHH
Q 009554 43 FSLNKLSSSLEQLLIDSTCEYSDAEIIVEGIPVCVHRCILAARSKFFYELFKREKGSVDKEGKPKYPMSELLPYGKVGYE 122 (532)
Q Consensus 43 ~~~~~l~~~l~~l~~~~~~~~sDv~i~v~g~~~~~Hr~iLaarS~~F~~~f~~~~~~~~~~~~~~i~l~~l~~~~~v~~~ 122 (532)
.+.+.+.+.|.+++.++ .+|||+|.|+|+.|+|||+||++||+||++||.+++.+ ...+.+++ +++++
T Consensus 18 ~~~~~l~~~l~~l~~~~--~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e-----~~~i~l~~-----~v~~~ 85 (138)
T 2z8h_A 18 VHSTNVLLSLNDQRKKD--VLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDA-----ELTVTLPE-----EVTVK 85 (138)
T ss_dssp SHHHHHHHHHHHHHHHT--CSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCCCT-----TEEEECCT-----TSCHH
T ss_pred chHHHHHHHHHHHHhhC--CCcCeEEEECCEEEechHHHHHHcCHHHHHHHhcCCCC-----CceEEeCC-----CCCHH
Confidence 57889999999999999 99999999999999999999999999999999988764 24777752 28899
Q ss_pred HHHHHHhhhccCCcCCCCCccccccccccccCCCchhhhhHHHHHHHHHhhCcHHHHHHHHHcCCC
Q 009554 123 AFLIFLSYTYSGKLKPFPMEVSTCVDNICVHDACRPAINFAVEMMYASSIFELPELVSLFQRRLLN 188 (532)
Q Consensus 123 ~~~~lL~ylYtg~l~~~~~~v~~cvd~~~~h~a~~~~~~~~~~~L~~A~~~~~~~lv~~ll~~~~~ 188 (532)
+|..+|+|+|||++.+...+ +.++|.+|..++++.+++.|.+....
T Consensus 86 ~~~~lL~~~Ytg~~~i~~~~--------------------v~~ll~~A~~~~i~~L~~~C~~~l~~ 131 (138)
T 2z8h_A 86 GFEPLIQFAYTAKLILSKDN--------------------VDEVCRCVEFLSVHNIEESCFQFLKF 131 (138)
T ss_dssp HHHHHHHHHHHSCCCCCTTT--------------------HHHHHHHHHHHTCGGGHHHHHHHTTC
T ss_pred HHHHHHHHhcCCCcccCHHH--------------------HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999999887655 49999999999999999999887665
No 117
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=99.79 E-value=3.2e-19 Score=152.10 Aligned_cols=107 Identities=18% Similarity=0.291 Sum_probs=96.7
Q ss_pred cchHHHHHHHHHHHhCCCCCccceEEEEcCeeEeeeeeehhhcCHHHHHHHhhccCCCCCCCCCeeecCCCCCCCccCHH
Q 009554 43 FSLNKLSSSLEQLLIDSTCEYSDAEIIVEGIPVCVHRCILAARSKFFYELFKREKGSVDKEGKPKYPMSELLPYGKVGYE 122 (532)
Q Consensus 43 ~~~~~l~~~l~~l~~~~~~~~sDv~i~v~g~~~~~Hr~iLaarS~~F~~~f~~~~~~~~~~~~~~i~l~~l~~~~~v~~~ 122 (532)
.|.+.+.+.+.+++.++ .+|||+|.++|+.|+|||+||++||+||++||.++ ...|.+++ ++++
T Consensus 9 ~h~~~l~~~l~~l~~~~--~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~--------~~~i~l~~------~~~~ 72 (119)
T 2q81_A 9 QHSQHVLEQLNQQRQLG--LLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQ--------KDVVHLDI------SNAA 72 (119)
T ss_dssp HHHHHHHHHHHHHHHHT--CSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHC--------CSGGGGGG------CCHH
T ss_pred hHHHHHHHHHHHHHhcC--CCcceEEEECCEEEehhHHHHHHcCHHHHHHHcCC--------CCEEEeCC------CCHH
Confidence 57889999999999999 99999999999999999999999999999999872 34677766 7889
Q ss_pred HHHHHHhhhccCCcCCCCCccccccccccccCCCchhhhhHHHHHHHHHhhCcHHHHHHHHHc
Q 009554 123 AFLIFLSYTYSGKLKPFPMEVSTCVDNICVHDACRPAINFAVEMMYASSIFELPELVSLFQRR 185 (532)
Q Consensus 123 ~~~~lL~ylYtg~l~~~~~~v~~cvd~~~~h~a~~~~~~~~~~~L~~A~~~~~~~lv~~ll~~ 185 (532)
+|..+|+|+|||++.+...+ +.++|.+|..++++++++.|.+.
T Consensus 73 ~f~~ll~~~Ytg~~~i~~~~--------------------~~~ll~~A~~l~i~~L~~~C~~~ 115 (119)
T 2q81_A 73 GLGQVLEFMYTAKLSLSPEN--------------------VDDVLAVATFLQMQDIITACHAL 115 (119)
T ss_dssp HHHHHHHHHHHSCCCCCTTT--------------------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCccCHHH--------------------HHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999999999999887655 49999999999999999998765
No 118
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.78 E-value=1.2e-19 Score=166.74 Aligned_cols=134 Identities=22% Similarity=0.250 Sum_probs=111.1
Q ss_pred ccCcchhhhcCCcchHHHHHHHHhhcCCCCCCCCccCCcccccCCcHHHHHhcCCCHHHHHHHHhcC-CC---C-CCCch
Q 009554 225 DLDTISIEKELPTEVAEEIRMLRLKSFPDDENTAVEVDPLREKRIKRIHKALDSDDVELVRLLLSES-EI---T-LDEAN 299 (532)
Q Consensus 225 ~~~~t~L~~a~~~~~~~~i~~lL~~~~~~~~~~~~~in~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~i---n-~~g~t 299 (532)
..|.||||.|+..+. .++++.|+. ++ ++|.+|..|+||||+|+..|+.+++++|++.| ++ + ..|+|
T Consensus 42 ~~g~t~L~~A~~~g~-~~~v~~Ll~---~~-----~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~t 112 (183)
T 3deo_A 42 SEYETPWWTAARKAD-EQALSQLLE---DR-----DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLT 112 (183)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHTT---TS-----CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCC
T ss_pred CCCCCHHHHHHHcCC-HHHHHHHHh---cC-----CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCC
Confidence 356677777777776 445555532 32 48899999999999999999999999999999 54 3 77999
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCCccc
Q 009554 300 ALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDLTLDGRSAVSICRRLTRPKD 379 (532)
Q Consensus 300 ~Lh~A~~~g~~~~v~~LL~~~~advn~~d~~G~TpLh~Aa~~~~~~iv~~LL~~gad~~~~d~~G~TpL~~A~~~~~~~~ 379 (532)
|||+|+..|+.++++.|+..+ ++++.+|..|+||||+|+..++. ..+.+||++|++.|+...
T Consensus 113 pL~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~~~~-----------------~~~~~~l~~a~~~~~~~i 174 (183)
T 3deo_A 113 ALHMAAGYVRPEVVEALVELG-ADIEVEDERGLTALELAREILKT-----------------TPKGNPMQFGRRIGLEKV 174 (183)
T ss_dssp HHHHHHHTTCHHHHHHHHHHT-CCTTCCCTTSCCHHHHHHHHHHT-----------------CCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHcC-CCCcCCCCCCCCHHHHHHHhccC-----------------cccccHHHHHHHcCHHHH
Confidence 999999999999999999997 99999999999999999975432 467899999999877777
Q ss_pred HHHHHh
Q 009554 380 YQAKTE 385 (532)
Q Consensus 380 ~~~~~~ 385 (532)
++.+.+
T Consensus 175 ~~~L~~ 180 (183)
T 3deo_A 175 INVLEG 180 (183)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 776654
No 119
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=99.78 E-value=4.5e-19 Score=151.65 Aligned_cols=108 Identities=25% Similarity=0.395 Sum_probs=97.2
Q ss_pred cchHHHHHHHHHHHhCCCCCccceEEEEcCeeEeeeeeehhhcCHHHHHHHhhccCCCCCCCCCeeecCCCCCCCccCHH
Q 009554 43 FSLNKLSSSLEQLLIDSTCEYSDAEIIVEGIPVCVHRCILAARSKFFYELFKREKGSVDKEGKPKYPMSELLPYGKVGYE 122 (532)
Q Consensus 43 ~~~~~l~~~l~~l~~~~~~~~sDv~i~v~g~~~~~Hr~iLaarS~~F~~~f~~~~~~~~~~~~~~i~l~~l~~~~~v~~~ 122 (532)
.+.+.+.+.+.+++.++ .+|||+|.|+|+.|+|||+||++||+||++||.++ ...|.+++ ++++
T Consensus 10 ~~~~~l~~~l~~l~~~~--~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~--------~~~i~l~~------~~~~ 73 (121)
T 1buo_A 10 SHPTGLLCKANQMRLAG--TLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN--------SQHYTLDF------LSPK 73 (121)
T ss_dssp THHHHHHHHHHHHHHHT--TTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSC--------CSEEEECS------SCHH
T ss_pred chHHHHHHHHHHHHhcC--CCCCEEEEECCEEEehhHHHHhhcCHHHHHHHcCC--------CcEEEeCC------CCHH
Confidence 47789999999999999 99999999999999999999999999999999763 35788887 8889
Q ss_pred HHHHHHhhhccCCcCCCCCccccccccccccCCCchhhhhHHHHHHHHHhhCcHHHHHHHHHcC
Q 009554 123 AFLIFLSYTYSGKLKPFPMEVSTCVDNICVHDACRPAINFAVEMMYASSIFELPELVSLFQRRL 186 (532)
Q Consensus 123 ~~~~lL~ylYtg~l~~~~~~v~~cvd~~~~h~a~~~~~~~~~~~L~~A~~~~~~~lv~~ll~~~ 186 (532)
+|..+|+|+|||++.+.+.+ +.+++.+|..++++.+++.|.+..
T Consensus 74 ~f~~ll~~~Ytg~~~~~~~~--------------------~~~ll~~A~~~~i~~L~~~c~~~l 117 (121)
T 1buo_A 74 TFQQILEYAYTATLQAKAED--------------------LDDLLYAAEILEIEYLEEQCLKML 117 (121)
T ss_dssp HHHHHHHHHHHSCCCCCGGG--------------------HHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCcCCCHHH--------------------HHHHHHHHHHHCCHHHHHHHHHHH
Confidence 99999999999999876544 499999999999999999987653
No 120
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.78 E-value=5e-19 Score=188.62 Aligned_cols=130 Identities=18% Similarity=0.154 Sum_probs=99.6
Q ss_pred chhhhcCCcchHHHHHHHHhhcCCCCCCCCccCCcc------cccCCcHHHHHhc---CCCHHHHHHHHhcC-CC---CC
Q 009554 229 ISIEKELPTEVAEEIRMLRLKSFPDDENTAVEVDPL------REKRIKRIHKALD---SDDVELVRLLLSES-EI---TL 295 (532)
Q Consensus 229 t~L~~a~~~~~~~~i~~lL~~~~~~~~~~~~~in~~------d~~g~t~Lh~A~~---~g~~~~v~~Ll~~g-~i---n~ 295 (532)
+.|+.|+..+....+..++. .|+ ++|.. |..|+||||+|+. .|+.++|++|+++| ++ |.
T Consensus 134 ~~L~~A~~~g~~~~v~~ll~---~g~-----~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~ 205 (497)
T 3lvq_E 134 QRLWTAICNRDLLSVLEAFA---NGQ-----DFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAA 205 (497)
T ss_dssp HHHHHHHHHTCHHHHHHHHH---TTC-----CSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCS
T ss_pred HHHHHHHhccCHHHHHHHHh---hcc-----cccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCC
Confidence 34555555555445555552 232 46655 8899999999955 99999999999999 54 57
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCCcHHHHHHH
Q 009554 296 DEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDLTLDGRSAVSICRR 373 (532)
Q Consensus 296 ~g~t~Lh~A~~~g~~~~v~~LL~~~~advn~~d~~G~TpLh~Aa~~~~~~iv~~LL~~gad~~~~d~~G~TpL~~A~~ 373 (532)
.|+||||+|+..|+.++++.||..| ||+|.+|..|+||||+|+..|+.+++++|+++||+++. ||+|.+..
T Consensus 206 ~g~TpLh~A~~~g~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~------~~~h~~~~ 276 (497)
T 3lvq_E 206 DGNTALHYAALYNQPDCLKLLLKGR-ALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFA------FPLHVDYS 276 (497)
T ss_dssp SSCCHHHHHTTTTCHHHHHHHHHTC-CCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC------------------
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCC------Ccceeecc
Confidence 8999999999999999999999987 99999999999999999999999999999999999987 46665543
No 121
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=99.78 E-value=1e-19 Score=156.70 Aligned_cols=111 Identities=19% Similarity=0.254 Sum_probs=97.5
Q ss_pred ccchHHHHHHHHHHHhCCCCCccceEEEEcCeeEeeeeeehhhcCHHHHHHHhhccCCCCCCCCCeeecCCCCCCCccCH
Q 009554 42 VFSLNKLSSSLEQLLIDSTCEYSDAEIIVEGIPVCVHRCILAARSKFFYELFKREKGSVDKEGKPKYPMSELLPYGKVGY 121 (532)
Q Consensus 42 ~~~~~~l~~~l~~l~~~~~~~~sDv~i~v~g~~~~~Hr~iLaarS~~F~~~f~~~~~~~~~~~~~~i~l~~l~~~~~v~~ 121 (532)
..+.+.+.+.|.+++.++ .+|||+|.|+|+.|+|||+||++||+||++||.+.+.+ ...|.+++ .+++
T Consensus 13 ~~~~~~l~~~l~~l~~~~--~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e-----~~~i~l~~-----~~~~ 80 (125)
T 3ohu_A 13 TVHCTNILLGLNDQRKKD--ILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKN-----DLVVSLPE-----EVTA 80 (125)
T ss_dssp SSHHHHHHHHHHHHHHHT--CSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTCCCS-----SCEEECCT-----TCCH
T ss_pred HHHHHHHHHHHHHHHhcC--CccceEEEECCEEEechHHHHHHcCHHHHHHhcCCCCC-----CcEEEeCC-----CCCH
Confidence 368899999999999999 99999999999999999999999999999999987654 45677765 3788
Q ss_pred HHHHHHHhhhccCCcCCCCCccccccccccccCCCchhhhhHHHHHHHHHhhCcHHHHHHHHH
Q 009554 122 EAFLIFLSYTYSGKLKPFPMEVSTCVDNICVHDACRPAINFAVEMMYASSIFELPELVSLFQR 184 (532)
Q Consensus 122 ~~~~~lL~ylYtg~l~~~~~~v~~cvd~~~~h~a~~~~~~~~~~~L~~A~~~~~~~lv~~ll~ 184 (532)
++|+.+|+|+|||++.+...+ +.++|.+|..++++.+++.|.+
T Consensus 81 ~~f~~~l~~iYtg~~~~~~~~--------------------v~~ll~~A~~l~i~~L~~~C~~ 123 (125)
T 3ohu_A 81 RGFGPLLQFAYTAKLLLSREN--------------------IREVIRCAEFLRMHNLEDSCFS 123 (125)
T ss_dssp HHHHHHHHHHTTSEEEECTTT--------------------HHHHHHHHHHHTBSSCTTSSCC
T ss_pred HHHHHHHHhHcCCceEECHHH--------------------HHHHHHHHHHhCCHHHHHHHHH
Confidence 899999999999999887655 4899999999999988776654
No 122
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.78 E-value=2.6e-19 Score=179.14 Aligned_cols=149 Identities=27% Similarity=0.366 Sum_probs=126.3
Q ss_pred hHHHHHHHHHHHhCCCCCccceEEEEcCeeEeeeeeehhhcCHHHHHHHhhccCCCCCCCCCeeecCCCCCCCccCHHHH
Q 009554 45 LNKLSSSLEQLLIDSTCEYSDAEIIVEGIPVCVHRCILAARSKFFYELFKREKGSVDKEGKPKYPMSELLPYGKVGYEAF 124 (532)
Q Consensus 45 ~~~l~~~l~~l~~~~~~~~sDv~i~v~g~~~~~Hr~iLaarS~~F~~~f~~~~~~~~~~~~~~i~l~~l~~~~~v~~~~~ 124 (532)
.+.|.+++.+++.++ .+|||+|.|+|+.|+|||+|||+||+||++||.+++.|+ ....|.+++ +++++|
T Consensus 158 ~~~l~~~l~~l~~~~--~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~---~~~~i~l~~------~~~~~f 226 (312)
T 3hqi_A 158 ECRLADELGGLWENS--RFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEES---KKNRVEIND------VEPEVF 226 (312)
T ss_dssp CCCHHHHHHHHHHTT--CSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC--------CCSEEEECS------SCHHHH
T ss_pred CchHHHHHHHHHhCC--CCCceEEEECCEEEeHHHHHHHHcCHHHHHHhccCcccc---CCceEEecC------CCHHHH
Confidence 357889999999999 999999999999999999999999999999999988773 446899988 888899
Q ss_pred HHHHhhhccCCcCCCCCccccccccccccCCCchhhhhHHHHHHHHHhhCcHHHHHHHHHcCCCcccccCCCCcHHHHHH
Q 009554 125 LIFLSYTYSGKLKPFPMEVSTCVDNICVHDACRPAINFAVEMMYASSIFELPELVSLFQRRLLNFVGKAVAEDIIPILLA 204 (532)
Q Consensus 125 ~~lL~ylYtg~l~~~~~~v~~cvd~~~~h~a~~~~~~~~~~~L~~A~~~~~~~lv~~ll~~~~~i~~~~~~~n~~t~L~~ 204 (532)
+.+|+|+|||++.+.. +.+..+|.+|.+++++.+.+.|.+....... ..|+...|.+
T Consensus 227 ~~~L~~iYt~~~~~~~--------------------~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~---~~n~~~~l~~ 283 (312)
T 3hqi_A 227 KEMMCFIYTGKAPNLD--------------------KMADDLLAAADKYALERLKVMCEDALCSNLS---VENAAEILIL 283 (312)
T ss_dssp HHHHHHHHHSCCTTHH--------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC---TTTHHHHHHH
T ss_pred HHHHHhhcCCCCCChH--------------------HHHHHHHHHHHHhCHHHHHHHHHHHHHccCC---HHHHHHHHHH
Confidence 9999999999876642 3458999999999999999999887765444 6788999999
Q ss_pred HHHhCcHHHHHcccccccccccC
Q 009554 205 AFHCQLSQLLAQCVDRIVRSDLD 227 (532)
Q Consensus 205 A~~~~~~~Ll~~~~~~~~~~~~~ 227 (532)
|..++...|.+.|.+++..+...
T Consensus 284 A~~~~~~~L~~~~~~~i~~~~~~ 306 (312)
T 3hqi_A 284 ADLHSADQLKTQAVDFINYHATD 306 (312)
T ss_dssp HHHTTCHHHHHHHHHHHHHTC--
T ss_pred HHHhCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999998876543
No 123
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.77 E-value=1.8e-18 Score=170.11 Aligned_cols=187 Identities=14% Similarity=0.060 Sum_probs=129.2
Q ss_pred HHHHHHHHhhCcHHHHHHHHHcCCCccc--ccCCCCcHHHHHHHHHhCcHHHH-HcccccccccccCcchhhhcCCcchH
Q 009554 164 VEMMYASSIFELPELVSLFQRRLLNFVG--KAVAEDIIPILLAAFHCQLSQLL-AQCVDRIVRSDLDTISIEKELPTEVA 240 (532)
Q Consensus 164 ~~~L~~A~~~~~~~lv~~ll~~~~~i~~--~~~~~n~~t~L~~A~~~~~~~Ll-~~~~~~~~~~~~~~t~L~~a~~~~~~ 240 (532)
.+.++.+...|...+.+++......... ++.... . .+.......+.+. +.............++|+.|+..+..
T Consensus 67 ~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~-~--~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~~~d~ 143 (278)
T 1dcq_A 67 TSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSD-M--IARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKTRDI 143 (278)
T ss_dssp GGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCC-H--HHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCC-H--HHHHHHHHHHHHHhhcccccccccchhhhhhhhHhhhccc
Confidence 4566778888988888877655432211 111111 1 1111000001111 11111222222334678888887775
Q ss_pred HHHHHHHhhcCCCCCCCCcc-CCcccccCCcHHHHHhcC---CCHHHHHHHHhcC-CC---CCCCchHHHHHHHcCCHHH
Q 009554 241 EEIRMLRLKSFPDDENTAVE-VDPLREKRIKRIHKALDS---DDVELVRLLLSES-EI---TLDEANALHYAAAYCDPKV 312 (532)
Q Consensus 241 ~~i~~lL~~~~~~~~~~~~~-in~~d~~g~t~Lh~A~~~---g~~~~v~~Ll~~g-~i---n~~g~t~Lh~A~~~g~~~~ 312 (532)
..+..++. .|.+.+... ++..|..|+||||+|+.. |+.+++++|+++| ++ |..|+||||+|+..|+.++
T Consensus 144 ~~~~~ll~---~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~~ 220 (278)
T 1dcq_A 144 FGLLQAYA---DGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAEC 220 (278)
T ss_dssp HHHHHHHH---TTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred HHHHHHHH---hhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCHHH
Confidence 66666553 233112111 566688999999999999 8999999999999 54 5889999999999999999
Q ss_pred HHHHHHcCCCCCcCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCC
Q 009554 313 LSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACA 357 (532)
Q Consensus 313 v~~LL~~~~advn~~d~~G~TpLh~Aa~~~~~~iv~~LL~~gad~ 357 (532)
++.||..| +|++.+|..|+||||+|+..|+.+++++|+++|++.
T Consensus 221 v~~Ll~~g-ad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 221 LKLLLRGK-ASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR 264 (278)
T ss_dssp HHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred HHHHHHcC-CCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 99999976 999999999999999999999999999999999864
No 124
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=99.76 E-value=2.1e-19 Score=154.46 Aligned_cols=111 Identities=20% Similarity=0.237 Sum_probs=96.4
Q ss_pred cchHHHHHHHHHHHhCCCCCccceEEEEcCeeEeeeeeehhhcCHHHHHHHhhccCCCCCCCCCeeecC-CCCCCCccCH
Q 009554 43 FSLNKLSSSLEQLLIDSTCEYSDAEIIVEGIPVCVHRCILAARSKFFYELFKREKGSVDKEGKPKYPMS-ELLPYGKVGY 121 (532)
Q Consensus 43 ~~~~~l~~~l~~l~~~~~~~~sDv~i~v~g~~~~~Hr~iLaarS~~F~~~f~~~~~~~~~~~~~~i~l~-~l~~~~~v~~ 121 (532)
.+.+.+.+.+.+++.++ .+|||+|.|+|+.|+|||+||++||+||++||.+++.+ ...+.++ + +++
T Consensus 11 ~~~~~l~~~l~~l~~~~--~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~~~~e-----~~~i~l~~~------v~~ 77 (124)
T 2ihc_A 11 VHSTNVLLSLNDQRKKD--VLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADG-----ELNITLPEE------VTV 77 (124)
T ss_dssp SHHHHHHHHHHHHHHHT--CSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTC--------CEEEECCTT------SCH
T ss_pred chHHHHHHHHHHHHhcC--CCcCEEEEECCEEEecHHHHHHHcCHHHHHHHcCCCCC-----CceEeecCC------cCH
Confidence 57789999999999999 99999999999999999999999999999999988765 2467774 4 889
Q ss_pred HHHHHHHhhhccCCcCCCCCccccccccccccCCCchhhhhHHHHHHHHHhhCcHHHHHHHHHcC
Q 009554 122 EAFLIFLSYTYSGKLKPFPMEVSTCVDNICVHDACRPAINFAVEMMYASSIFELPELVSLFQRRL 186 (532)
Q Consensus 122 ~~~~~lL~ylYtg~l~~~~~~v~~cvd~~~~h~a~~~~~~~~~~~L~~A~~~~~~~lv~~ll~~~ 186 (532)
++|..+|+|+|||++.+...+ +.++|.+|..++++.+++.|.+..
T Consensus 78 ~~f~~lL~~iYtg~~~i~~~~--------------------v~~ll~~A~~~~~~~L~~~C~~~l 122 (124)
T 2ihc_A 78 KGFEPLIQFAYTAKLILSKEN--------------------VDEVCKCVEFLSVHNIEESCFQFL 122 (124)
T ss_dssp HHHHHHHHHHHHSEEEEETTT--------------------HHHHHHHHHHHTBSSCCGGGGGTC
T ss_pred HHHHHHHHHhcCCCcccCHHH--------------------HHHHHHHHHHHCCHHHHHHHHHHH
Confidence 999999999999998876554 499999999999999988887653
No 125
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.76 E-value=2.1e-18 Score=175.95 Aligned_cols=144 Identities=15% Similarity=0.132 Sum_probs=105.7
Q ss_pred ccccCcchhhhcCCc-chHHHHHHHHhhcCCCCCCCCccCCccc--ccCCcHHHHHhcCCCHHHHHHHHhcC-CC---CC
Q 009554 223 RSDLDTISIEKELPT-EVAEEIRMLRLKSFPDDENTAVEVDPLR--EKRIKRIHKALDSDDVELVRLLLSES-EI---TL 295 (532)
Q Consensus 223 ~~~~~~t~L~~a~~~-~~~~~i~~lL~~~~~~~~~~~~~in~~d--~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~i---n~ 295 (532)
....+.|+||.|+.. +....+..++. .| +++|..+ ..|+||||+|+..|+.++|++|+++| ++ |.
T Consensus 195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~---~G-----advn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~ 266 (368)
T 3jue_A 195 GSLHPGALLFRASGHPPSLPTMADALA---HG-----ADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADS 266 (368)
T ss_dssp --CCHHHHHHHHTSSSCCHHHHHHHHH---TT-----CCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred ccCCCCcHHHHHHHccCCHHHHHHHHH---cC-----CCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCC
Confidence 344567899999988 88444444442 33 3588887 89999999999999999999999999 54 58
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCChHHHHHHHcCCHHHHHHHHhCC---CCCCccCCCCCcHHHHHH
Q 009554 296 DEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKG---ACASDLTLDGRSAVSICR 372 (532)
Q Consensus 296 ~g~t~Lh~A~~~g~~~~v~~LL~~~~advn~~d~~G~TpLh~Aa~~~~~~iv~~LL~~g---ad~~~~d~~G~TpL~~A~ 372 (532)
.|+||||+|+..|+.+++++||..+ ++++.+|..|+||||+|+..|+.+++++|+..| ++....+..+.|+++++.
T Consensus 267 ~G~TpLh~A~~~g~~~~v~~LL~~G-ad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~ 345 (368)
T 3jue_A 267 AGRGPLHHATILGHTGLACLFLKRG-ADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFR 345 (368)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC--------------------
T ss_pred CCCCHHHHHHHcCcHHHHHHHHHCc-CCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHH
Confidence 8999999999999999999999987 999999999999999999999999999999865 555566778899999887
Q ss_pred HcC
Q 009554 373 RLT 375 (532)
Q Consensus 373 ~~~ 375 (532)
...
T Consensus 346 ~~~ 348 (368)
T 3jue_A 346 DFS 348 (368)
T ss_dssp ---
T ss_pred HHH
Confidence 643
No 126
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=99.76 E-value=1.1e-18 Score=146.39 Aligned_cols=100 Identities=25% Similarity=0.404 Sum_probs=84.8
Q ss_pred HHhCCCCCccceEEEEcC----eeEeeeeeehhhcCHHHHHHHhhccCCCCCCCCCeeecCCCCCCCccCHHHHHHHHhh
Q 009554 55 LLIDSTCEYSDAEIIVEG----IPVCVHRCILAARSKFFYELFKREKGSVDKEGKPKYPMSELLPYGKVGYEAFLIFLSY 130 (532)
Q Consensus 55 l~~~~~~~~sDv~i~v~g----~~~~~Hr~iLaarS~~F~~~f~~~~~~~~~~~~~~i~l~~l~~~~~v~~~~~~~lL~y 130 (532)
+++++ .+|||+|.|+| +.|+|||+||++||+||++||.++|.| +...|.+++ +++++|..+|+|
T Consensus 2 l~~~~--~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e----~~~~i~l~~------~~~~~f~~~l~~ 69 (109)
T 2vkp_A 2 MFNNE--LMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAE----VKSEIHIPD------VEPAAFLILLKY 69 (109)
T ss_dssp CTTCC--TTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC----------CCEEEETT------SCHHHHHHHHHH
T ss_pred cccCC--CcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCccc----CCCeEEeCC------CCHHHHHHHHHH
Confidence 56778 99999999998 899999999999999999999999887 337889988 888899999999
Q ss_pred hccCCcCCCCCccccccccccccCCCchhhhhHHHHHHHHHhhCcHHHHHHHHHcC
Q 009554 131 TYSGKLKPFPMEVSTCVDNICVHDACRPAINFAVEMMYASSIFELPELVSLFQRRL 186 (532)
Q Consensus 131 lYtg~l~~~~~~v~~cvd~~~~h~a~~~~~~~~~~~L~~A~~~~~~~lv~~ll~~~ 186 (532)
+|||++.+.+.+ +.+++.+|..++++.+++.|.+..
T Consensus 70 iYt~~~~~~~~~--------------------~~~ll~~A~~~~~~~L~~~c~~~l 105 (109)
T 2vkp_A 70 MYSDEIDLEADT--------------------VLATLYAAKKYIVPALAKACVNFL 105 (109)
T ss_dssp HHHCCCCCCTTT--------------------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HcCCCccCCHHH--------------------HHHHHHHHHHhCcHHHHHHHHHHH
Confidence 999999887655 489999999999999999987653
No 127
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=99.75 E-value=5.6e-19 Score=152.88 Aligned_cols=111 Identities=23% Similarity=0.390 Sum_probs=94.7
Q ss_pred cchHHHHHHHHHHHhCCCCCccceEEEEcCeeEeeeeeehhhcCHHHHHHHhhccCCCCCCCCCeeecC-CCCCCCccCH
Q 009554 43 FSLNKLSSSLEQLLIDSTCEYSDAEIIVEGIPVCVHRCILAARSKFFYELFKREKGSVDKEGKPKYPMS-ELLPYGKVGY 121 (532)
Q Consensus 43 ~~~~~l~~~l~~l~~~~~~~~sDv~i~v~g~~~~~Hr~iLaarS~~F~~~f~~~~~~~~~~~~~~i~l~-~l~~~~~v~~ 121 (532)
.+.+.+.+.+.+++.++ .+|||+|.|+|+.|+|||+||++||+||++||.++ ....|.++ + +++
T Consensus 15 ~~~~~l~~~l~~l~~~~--~~~Dv~l~v~~~~~~~Hk~vLaa~S~~F~~~f~~~-------~~~~i~l~~~------~~~ 79 (129)
T 3ga1_A 15 NFGNSILECLNEQRLQG--LYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNS-------RSAVVELPAA------VQP 79 (129)
T ss_dssp THHHHHHHHHHHHHHTT--CSCCEEEEETTEEEEECHHHHHHHBHHHHHHHHHC-------CCSEEECCTT------CCH
T ss_pred cHHHHHHHHHHHHHhcC--CCcceEEEECCEEEEehHHHHHHcCHHHHHHHcCC-------CCCEEEECCC------CCH
Confidence 57788999999999999 99999999999999999999999999999999885 34688886 6 889
Q ss_pred HHHHHHHhhhccCCcCCCCCccccccccccccCCCchhhhhHHHHHHHHHhhCcHHHHHHHHHcCCC
Q 009554 122 EAFLIFLSYTYSGKLKPFPMEVSTCVDNICVHDACRPAINFAVEMMYASSIFELPELVSLFQRRLLN 188 (532)
Q Consensus 122 ~~~~~lL~ylYtg~l~~~~~~v~~cvd~~~~h~a~~~~~~~~~~~L~~A~~~~~~~lv~~ll~~~~~ 188 (532)
++|..+|+|+|||++.+...+ +.++|.+|..++++.+++.|.+....
T Consensus 80 ~~f~~ll~~iYtg~~~i~~~~--------------------~~~ll~~A~~~~i~~l~~~C~~~L~~ 126 (129)
T 3ga1_A 80 QSFQQILSFCYTGRLSMNVGD--------------------QDLLMYTAGFLQIQEIMEKGTEFFLK 126 (129)
T ss_dssp HHHHHHHHHHHHSEEECCTTT--------------------HHHHHHHHHHTTBTTSSCC-------
T ss_pred HHHHHHHHHHhCCccccCHHH--------------------HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999999999999887655 48999999999999998888766544
No 128
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.75 E-value=4.3e-18 Score=145.57 Aligned_cols=98 Identities=16% Similarity=0.096 Sum_probs=90.3
Q ss_pred CCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCCcHHHHHH
Q 009554 293 ITLDEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDLTLDGRSAVSICR 372 (532)
Q Consensus 293 in~~g~t~Lh~A~~~g~~~~v~~LL~~~~advn~~d~~G~TpLh~Aa~~~~~~iv~~LL~~gad~~~~d~~G~TpL~~A~ 372 (532)
.+..|.||||+|+..|+.+++++|+..+ ++++.+|..|+||||+|+.+|+.+++++|+++|++++.+|..|+||||+|+
T Consensus 3 ~~~~~~~~l~~A~~~~~~~~v~~ll~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~ 81 (123)
T 3aaa_C 3 LGSMCDKEFMWALKNGDLDEVKDYVAKG-EDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAV 81 (123)
T ss_dssp ----CHHHHHHHHHTTCHHHHHHHHHTT-CCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHH
T ss_pred cccccchHHHHHHHcCCHHHHHHHHHcC-CCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH
Confidence 3467899999999999999999999987 999999999999999999999999999999999999999999999999999
Q ss_pred HcCCcccHHHHHhcCCccc
Q 009554 373 RLTRPKDYQAKTEQGKETN 391 (532)
Q Consensus 373 ~~~~~~~~~~~~~~G~~~~ 391 (532)
..++...++.+.+.|..+.
T Consensus 82 ~~~~~~~v~~Ll~~ga~~~ 100 (123)
T 3aaa_C 82 YEGHVSCVKLLLSKGADKT 100 (123)
T ss_dssp HHTCHHHHHHHHHTTCCTT
T ss_pred HcCCHHHHHHHHHcCCCCC
Confidence 9999999999999887654
No 129
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=99.75 E-value=3e-18 Score=145.29 Aligned_cols=103 Identities=23% Similarity=0.333 Sum_probs=91.1
Q ss_pred ccchHHHHHHHHHHHhCCCCCccceEEEEcCeeEeeeeeehhhcCHHHHHHHhhccCCCCCCCCCeeecCCCCCCCccCH
Q 009554 42 VFSLNKLSSSLEQLLIDSTCEYSDAEIIVEGIPVCVHRCILAARSKFFYELFKREKGSVDKEGKPKYPMSELLPYGKVGY 121 (532)
Q Consensus 42 ~~~~~~l~~~l~~l~~~~~~~~sDv~i~v~g~~~~~Hr~iLaarS~~F~~~f~~~~~~~~~~~~~~i~l~~l~~~~~v~~ 121 (532)
..+.+.+.+.+.+++.++ .+|||+|.|+|+.|+|||+||++||+||++||.++ ...|.+++ +++
T Consensus 12 ~~~~~~l~~~l~~~~~~~--~~~Dv~l~v~~~~f~aHk~vLaa~S~~F~~~f~~~--------~~~i~l~~------~~~ 75 (116)
T 3fkc_A 12 IQYSGSLLNSLNEQRGHG--LFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVA--------GQVVELSF------IRA 75 (116)
T ss_dssp TTHHHHHHHHHHHHHHHT--TTCCEEEEETTEEEEECHHHHHHHCHHHHHHTTSC--------CSEEEECS------SCH
T ss_pred ccHHHHHHHHHHHHHhcC--CceeEEEEECCEEEehhHHHHHHcCHHHHHHHcCC--------CCEEEeCC------CCH
Confidence 357789999999999999 99999999999999999999999999999999873 45788887 888
Q ss_pred HHHHHHHhhhccCCc-CCCCCccccccccccccCCCchhhhhHHHHHHHHHhhCcHHHHH
Q 009554 122 EAFLIFLSYTYSGKL-KPFPMEVSTCVDNICVHDACRPAINFAVEMMYASSIFELPELVS 180 (532)
Q Consensus 122 ~~~~~lL~ylYtg~l-~~~~~~v~~cvd~~~~h~a~~~~~~~~~~~L~~A~~~~~~~lv~ 180 (532)
++|+.+|+|+|||++ .+.. +.+.++|.+|..++++.+.+
T Consensus 76 ~~f~~~l~~~Ytg~~~~~~~--------------------~~~~~ll~~A~~l~i~~L~~ 115 (116)
T 3fkc_A 76 EIFAEILNYIYSSKIVRVRS--------------------DLLDELIKSGQLLGVKFIAA 115 (116)
T ss_dssp HHHHHHHHHHTTSCCCSCCH--------------------HHHHHHHHHHHHHTCHHHHT
T ss_pred HHHHHHHHhhcCCCcCCCCH--------------------HHHHHHHHHHHHhCccccCc
Confidence 899999999999998 4543 34589999999999998864
No 130
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.75 E-value=1.5e-18 Score=146.54 Aligned_cols=99 Identities=28% Similarity=0.359 Sum_probs=94.3
Q ss_pred CCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCCcHHHHHH
Q 009554 293 ITLDEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDLTLDGRSAVSICR 372 (532)
Q Consensus 293 in~~g~t~Lh~A~~~g~~~~v~~LL~~~~advn~~d~~G~TpLh~Aa~~~~~~iv~~LL~~gad~~~~d~~G~TpL~~A~ 372 (532)
.|.+|+||||+|+..|+.+++++|+..+ ++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~ 83 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKG-ADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAK 83 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTTTT-CCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence 4789999999999999999999999987 999999999999999999999999999999999999999999999999999
Q ss_pred HcCCcccHHHHHhcCCcccc
Q 009554 373 RLTRPKDYQAKTEQGKETNK 392 (532)
Q Consensus 373 ~~~~~~~~~~~~~~G~~~~~ 392 (532)
..++...++.+.+.|..++.
T Consensus 84 ~~~~~~~~~~Ll~~ga~~n~ 103 (115)
T 2l6b_A 84 KNGHHEIVKLLDAKGADVNA 103 (115)
T ss_dssp TTTCHHHHHHHHTTSSSHHH
T ss_pred HCCCHHHHHHHHHcCCCCCc
Confidence 99999999999999987654
No 131
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.74 E-value=4.6e-18 Score=142.63 Aligned_cols=89 Identities=24% Similarity=0.198 Sum_probs=71.4
Q ss_pred CCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCCcHHHHHH
Q 009554 293 ITLDEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDLTLDGRSAVSICR 372 (532)
Q Consensus 293 in~~g~t~Lh~A~~~g~~~~v~~LL~~~~advn~~d~~G~TpLh~Aa~~~~~~iv~~LL~~gad~~~~d~~G~TpL~~A~ 372 (532)
+|.+|.||||+|+..|+.+++++|+..+ +++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus 20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~ 98 (110)
T 2zgd_A 20 MGSDLGKKLLEAARAGQDDEVRILMANG-ADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISI 98 (110)
T ss_dssp --CCHHHHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred cCCccchHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHH
Confidence 5677888888888888888888888775 888888888888888888888888888888888888888888888888888
Q ss_pred HcCCcccHHH
Q 009554 373 RLTRPKDYQA 382 (532)
Q Consensus 373 ~~~~~~~~~~ 382 (532)
..++...++.
T Consensus 99 ~~~~~~~~~~ 108 (110)
T 2zgd_A 99 DNGNEDLAEI 108 (110)
T ss_dssp HHTCHHHHHH
T ss_pred HcCCHHHHHH
Confidence 8777666554
No 132
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.73 E-value=2e-18 Score=166.41 Aligned_cols=137 Identities=23% Similarity=0.241 Sum_probs=117.1
Q ss_pred ccCcchhhhcCCcchHHHHHHHHhhcCCCCCCCCccCCcccccCCcHHHHHhcCCCHHHHHHHHhcC-CCC----CCCch
Q 009554 225 DLDTISIEKELPTEVAEEIRMLRLKSFPDDENTAVEVDPLREKRIKRIHKALDSDDVELVRLLLSES-EIT----LDEAN 299 (532)
Q Consensus 225 ~~~~t~L~~a~~~~~~~~i~~lL~~~~~~~~~~~~~in~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~in----~~g~t 299 (532)
..|.|+||.|+..+. .++++.|+. ++ ++|.+|..|+||||+|+..|+.++|++|++.| ++| ..|+|
T Consensus 43 ~~g~t~L~~A~~~g~-~~~v~~Ll~---~~-----~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t 113 (244)
T 3ui2_A 43 SEYETPWWTAARKAD-EQALSQLLE---DR-----DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLT 113 (244)
T ss_dssp HHHHHHHHHHHTTTC-HHHHHHTTT---TC-----CTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCC
T ss_pred cCCCCHHHHHHHcCC-HHHHHHHHc---CC-----CCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCC
Confidence 357788888888888 455555532 32 48999999999999999999999999999999 553 66999
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCCccc
Q 009554 300 ALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDLTLDGRSAVSICRRLTRPKD 379 (532)
Q Consensus 300 ~Lh~A~~~g~~~~v~~LL~~~~advn~~d~~G~TpLh~Aa~~~~~~iv~~LL~~gad~~~~d~~G~TpL~~A~~~~~~~~ 379 (532)
|||+|+..|+.++++.||..| ++++.+|..|+||||+|+..++ +..+.||||+|+..|+...
T Consensus 114 ~L~~A~~~g~~~~v~~Ll~~g-a~~~~~d~~g~t~l~~A~~~~~-----------------~~~~~~~l~~a~~~g~~~i 175 (244)
T 3ui2_A 114 ALHMAAGYVRPEVVEALVELG-ADIEVEDERGLTALELAREILK-----------------TTPKGNPMQFGRRIGLEKV 175 (244)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHHHT-----------------TCCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCcHHHHHHHHHh-----------------ccCCCCHHHHHHHcChHHH
Confidence 999999999999999999986 9999999999999999986332 3578999999999999999
Q ss_pred HHHHHhcCC
Q 009554 380 YQAKTEQGK 388 (532)
Q Consensus 380 ~~~~~~~G~ 388 (532)
++.+.+.+.
T Consensus 176 v~~L~~~~~ 184 (244)
T 3ui2_A 176 INVLEGQVF 184 (244)
T ss_dssp HHHHHHHHE
T ss_pred HHHHHHhcc
Confidence 999987643
No 133
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.68 E-value=7e-17 Score=135.35 Aligned_cols=89 Identities=21% Similarity=0.265 Sum_probs=80.2
Q ss_pred CCcccccCCcHHHHHhcCCCHHHHHHHHhcC-CC---CCCCchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCChHHH
Q 009554 261 VDPLREKRIKRIHKALDSDDVELVRLLLSES-EI---TLDEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLH 336 (532)
Q Consensus 261 in~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~i---n~~g~t~Lh~A~~~g~~~~v~~LL~~~~advn~~d~~G~TpLh 336 (532)
.+..|.+|.||||+|+..|+.+++++|++.| ++ |..|+||||+|+..|+.+++++|+..+ ++++.+|..|+||||
T Consensus 17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~ 95 (110)
T 2zgd_A 17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAG-ADVXAQDKFGKTAFD 95 (110)
T ss_dssp -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHH
T ss_pred ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccccCCCcHHH
Confidence 5556889999999999999999999999999 44 588999999999999999999999986 999999999999999
Q ss_pred HHHHcCCHHHHHHH
Q 009554 337 IGAMRKEPSVIVSL 350 (532)
Q Consensus 337 ~Aa~~~~~~iv~~L 350 (532)
+|+..|+.+++++|
T Consensus 96 ~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 96 ISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHTCHHHHHHH
T ss_pred HHHHcCCHHHHHHh
Confidence 99999999999987
No 134
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=99.67 E-value=3.8e-17 Score=138.92 Aligned_cols=100 Identities=16% Similarity=0.112 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHhCCCCCccceEEEEcCeeEeeeeeehhhcCHHHHHHHhhccCCCCCCCCCeeecCCCCCCCccCHHHHH
Q 009554 46 NKLSSSLEQLLIDSTCEYSDAEIIVEGIPVCVHRCILAARSKFFYELFKREKGSVDKEGKPKYPMSELLPYGKVGYEAFL 125 (532)
Q Consensus 46 ~~l~~~l~~l~~~~~~~~sDv~i~v~g~~~~~Hr~iLaarS~~F~~~f~~~~~~~~~~~~~~i~l~~l~~~~~v~~~~~~ 125 (532)
..+.+.+. +.++ .+|||+|.|+|+.|+|||+|||++|+||++ ....|.+++ +++++|.
T Consensus 17 ~~~l~~l~--r~~~--~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~------------~~~~i~l~~------v~~~~f~ 74 (119)
T 3m5b_A 17 DRLVQLAA--RLRP--ALCDTLITVGSQEFPAHSLVLAGVSQQLGR------------RGQWALGEG------ISPSTFA 74 (119)
T ss_dssp CHHHHHHH--HHTT--TTCCEEEEETTEEEEECHHHHHTTCGGGCC------------CEEEECCSS------CCHHHHH
T ss_pred HHHHHHHH--HhcC--CCcceEEEECCEEEeeEHHHHHHcCHHHhc------------CCCEEEeCC------CCHHHHH
Confidence 45555554 4567 999999999999999999999999999974 224677777 8899999
Q ss_pred HHHhhhccCCcCCCCCccccccccccccCCCchhhhhHHHHHHHHHhhCcHHHHHHHHHcCC
Q 009554 126 IFLSYTYSGKLKPFPMEVSTCVDNICVHDACRPAINFAVEMMYASSIFELPELVSLFQRRLL 187 (532)
Q Consensus 126 ~lL~ylYtg~l~~~~~~v~~cvd~~~~h~a~~~~~~~~~~~L~~A~~~~~~~lv~~ll~~~~ 187 (532)
.+|+|+|||++.+...+ +.++|.+|..++++.+++.|.+...
T Consensus 75 ~ll~fiYtg~~~i~~~~--------------------v~~ll~aA~~l~i~~l~~~C~~~~~ 116 (119)
T 3m5b_A 75 QLLNFVYGESVELQPGE--------------------LRPLQEAARALGVQSLEEACWRARG 116 (119)
T ss_dssp HHHHHHTTCCEEECGGG--------------------HHHHHHHHHHTTCHHHHHHHHHHC-
T ss_pred HHHHHHcCCCcCcCHHH--------------------HHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 99999999999886554 4899999999999999999987654
No 135
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=98.51 E-value=1.2e-07 Score=84.34 Aligned_cols=113 Identities=17% Similarity=0.189 Sum_probs=74.3
Q ss_pred eEEEE-cCeeEeeeeeehhhcCHHHHHHHhh-ccC-CCCCCCCCeeecCCCCCCCccCHHHHHHHHhhhccCCcCCCCCc
Q 009554 66 AEIIV-EGIPVCVHRCILAARSKFFYELFKR-EKG-SVDKEGKPKYPMSELLPYGKVGYEAFLIFLSYTYSGKLKPFPME 142 (532)
Q Consensus 66 v~i~v-~g~~~~~Hr~iLaarS~~F~~~f~~-~~~-~~~~~~~~~i~l~~l~~~~~v~~~~~~~lL~ylYtg~l~~~~~~ 142 (532)
|+++. +|+.|.+||.+ |+.|+||++||.+ ++. +. ....|.|++ |+..++..+++|.|+++-...+..
T Consensus 3 v~L~ssDg~~f~v~~~v-A~~S~~i~~m~~~~~~~~e~---~~~~Ipl~~------V~~~iL~kViey~~~h~~~~~~~~ 72 (159)
T 2ast_A 3 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLGMDDEG---DDDPVPLPN------VNAAILKKVIQWCTHHKDDPPPPE 72 (159)
T ss_dssp EEEECTTSCEEEEEHHH-HHTCHHHHHHTTSSCSS---------CEECTT------SCHHHHHHHHHHHHHTTTCCC---
T ss_pred EEEEcCCCCEEEeCHHH-HHHhHHHHHHHHhcCCcccc---cCCCcCCCC------ccHHHHHHHHHHHHHcCcCCCCcc
Confidence 56664 69999999999 8999999999987 444 31 234688887 888899999999999974432211
Q ss_pred cccc----cccccccCC--CchhhhhHHHHHHHHHhhCcHHHHHHHHHcCCC
Q 009554 143 VSTC----VDNICVHDA--CRPAINFAVEMMYASSIFELPELVSLFQRRLLN 188 (532)
Q Consensus 143 v~~c----vd~~~~h~a--~~~~~~~~~~~L~~A~~~~~~~lv~~ll~~~~~ 188 (532)
...+ .+....-.+ -.-..+.+.++|.+|..+++..|++++.+..++
T Consensus 73 ~~~~~~~~~~~i~~wD~~F~~id~~~l~eLl~AAnyL~I~~Lld~~c~~va~ 124 (159)
T 2ast_A 73 DDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVAN 124 (159)
T ss_dssp --------CCCCCHHHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cccccccchhhhhHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 0000 000000000 000125569999999999999999998776655
No 136
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=98.33 E-value=8.6e-07 Score=71.65 Aligned_cols=82 Identities=15% Similarity=0.215 Sum_probs=57.1
Q ss_pred eEEEE-cCeeEeeeeeehhhcCHHHHHHHhh--ccCCCCCCCCCeeecCCCCCCCccCHHHHHHHHhhhc-----c---C
Q 009554 66 AEIIV-EGIPVCVHRCILAARSKFFYELFKR--EKGSVDKEGKPKYPMSELLPYGKVGYEAFLIFLSYTY-----S---G 134 (532)
Q Consensus 66 v~i~v-~g~~~~~Hr~iLaarS~~F~~~f~~--~~~~~~~~~~~~i~l~~l~~~~~v~~~~~~~lL~ylY-----t---g 134 (532)
|+++. +|..|.+||.| |+.|++|++||.+ .+.|. ....|.|++ |+..+++.+++|.| + +
T Consensus 4 v~L~SsDg~~F~v~r~v-A~~S~~ik~m~~~~~~~~E~---~~~~I~l~~------V~~~iL~kViey~~~h~~~~~~~~ 73 (97)
T 4ajy_C 4 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAEN---ETNEVNFRE------IPSHVLSKVCMYFTYKVRYTNSST 73 (97)
T ss_dssp EEEECTTCCEEEEEHHH-HTTSHHHHHHHCCC-----------CEEECTT------SCHHHHHHHHHHHHHHHHHTTCCS
T ss_pred EEEEecCCcEEEecHHH-HHHhHHHHHHHHhCCCcccc---CCCceECCC------CCHHHHHHHHHHHHHhcccCCCcC
Confidence 44554 58999999999 9999999999976 44431 245788887 88889999999999 5 3
Q ss_pred CcCCCCCccccccccccccCCCchhhhhHHHHHHHHHhhC
Q 009554 135 KLKPFPMEVSTCVDNICVHDACRPAINFAVEMMYASSIFE 174 (532)
Q Consensus 135 ~l~~~~~~v~~cvd~~~~h~a~~~~~~~~~~~L~~A~~~~ 174 (532)
.+..- + ++ .+.+.++|.+|..++
T Consensus 74 ~i~~~--~----i~-----------~~~l~eLl~AAnyL~ 96 (97)
T 4ajy_C 74 EIPEF--P----IA-----------PEIALELLMAANFLD 96 (97)
T ss_dssp CCCCC--C----CC-----------GGGHHHHHHHHHHHT
T ss_pred CCCcC--c----CC-----------HHHHHHHHHHHhhhC
Confidence 33310 0 01 145689999998765
No 137
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=97.88 E-value=1.4e-05 Score=69.11 Aligned_cols=110 Identities=18% Similarity=0.220 Sum_probs=72.7
Q ss_pred eEEEE-cCeeEeeeeeehhhcCHHHHHHHhhccCCCCCCCCCeeecCCCCCCCccCHHHHHHHHhhhccCCcCCCCCccc
Q 009554 66 AEIIV-EGIPVCVHRCILAARSKFFYELFKREKGSVDKEGKPKYPMSELLPYGKVGYEAFLIFLSYTYSGKLKPFPMEVS 144 (532)
Q Consensus 66 v~i~v-~g~~~~~Hr~iLaarS~~F~~~f~~~~~~~~~~~~~~i~l~~l~~~~~v~~~~~~~lL~ylYtg~l~~~~~~v~ 144 (532)
|+++. +|..|.+||.+ |..|++|+.||... +...|.+++ |+..++..+++|.|..+-...+....
T Consensus 4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~-------~~~~Ipl~~------V~~~iL~kVieyc~~h~~~~~~~~~~ 69 (141)
T 1fs1_B 4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDL-------GMDPVPLPN------VNAAILKKVIQWCTHHKDDPPPPEDD 69 (141)
T ss_dssp EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHT-------CCSSEECTT------CCHHHHHHHHHHHHHHTTCC------
T ss_pred EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhc-------CCCceecCC------cCHHHHHHHHHHHHHhccCCCccccc
Confidence 56665 68999999998 88999999999863 123577777 88899999999999876433211100
Q ss_pred cc----cccccccCC--CchhhhhHHHHHHHHHhhCcHHHHHHHHHcCCCc
Q 009554 145 TC----VDNICVHDA--CRPAINFAVEMMYASSIFELPELVSLFQRRLLNF 189 (532)
Q Consensus 145 ~c----vd~~~~h~a--~~~~~~~~~~~L~~A~~~~~~~lv~~ll~~~~~i 189 (532)
.+ .+....-.+ -.-..+.+.+++.+|..+++..|++++.+..++.
T Consensus 70 ~~~~~~~~~i~~wD~~F~~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ 120 (141)
T 1fs1_B 70 ENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANM 120 (141)
T ss_dssp -----------HHHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cccccchhhhhHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 00 000000000 0001245689999999999999999987766653
No 138
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=97.56 E-value=1.6e-05 Score=70.39 Aligned_cols=111 Identities=13% Similarity=0.151 Sum_probs=45.3
Q ss_pred eEEEE-cCeeEeeeeeehhhcCHHHHHHHhhccCCCCCCCCCeeecCCCCCCCccCHHHHHHHHhhhccCCcCCCCCccc
Q 009554 66 AEIIV-EGIPVCVHRCILAARSKFFYELFKREKGSVDKEGKPKYPMSELLPYGKVGYEAFLIFLSYTYSGKLKPFPMEVS 144 (532)
Q Consensus 66 v~i~v-~g~~~~~Hr~iLaarS~~F~~~f~~~~~~~~~~~~~~i~l~~l~~~~~v~~~~~~~lL~ylYtg~l~~~~~~v~ 144 (532)
|+++. +|..|.+||.+ |..|++|+.||..... ...|.|++ |+..++..+++|.|+.+-...+....
T Consensus 6 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~~------~~~Ipl~~------V~~~iL~kVieyc~~h~~~~~~~~~~ 72 (160)
T 2p1m_A 6 IVLKSSDGESFEVEEAV-ALESQTIAHMVEDDCV------DNGVPLPN------VTSKILAKVIEYCKRHVEAAASKAEA 72 (160)
T ss_dssp --CCC---------CHH-HHTCTTTC------------------CCTT------SCHHHHHHHHHC--------------
T ss_pred EEEEcCCCCEEEECHHH-HHHhHHHHHHHHccCC------CCceeCCc------CcHHHHHHHHHHHHHcccCCCccccc
Confidence 55554 69999999998 8899999999976421 23566666 88999999999999987442111000
Q ss_pred -c----ccccccccCCC--chhhhhHHHHHHHHHhhCcHHHHHHHHHcCCCc
Q 009554 145 -T----CVDNICVHDAC--RPAINFAVEMMYASSIFELPELVSLFQRRLLNF 189 (532)
Q Consensus 145 -~----cvd~~~~h~a~--~~~~~~~~~~L~~A~~~~~~~lv~~ll~~~~~i 189 (532)
. ..+....-.+. .-....+.+++.+|..+++..|+.++.+..++.
T Consensus 73 ~~~~~~~~~~i~~wD~~Fl~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ 124 (160)
T 2p1m_A 73 VEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADM 124 (160)
T ss_dssp ----------------------------CHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccccccchhhHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 0 00000000000 001134578888888889888888877666553
No 139
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=97.09 E-value=0.0017 Score=53.01 Aligned_cols=95 Identities=19% Similarity=0.275 Sum_probs=68.5
Q ss_pred ceEEEEcCeeEeeeeeehhhcC-HHHHHHHhhccCCC-CCCCCCeeecCCCCCCCccCHHHHHHHHhhhccCCcCCCCCc
Q 009554 65 DAEIIVEGIPVCVHRCILAARS-KFFYELFKREKGSV-DKEGKPKYPMSELLPYGKVGYEAFLIFLSYTYSGKLKPFPME 142 (532)
Q Consensus 65 Dv~i~v~g~~~~~Hr~iLaarS-~~F~~~f~~~~~~~-~~~~~~~i~l~~l~~~~~v~~~~~~~lL~ylYtg~l~~~~~~ 142 (532)
-|+|.|+|..|...+..|.... .+|..||.+.+.-. ..+....+-+ | -.+..|..+|+|+.+|++..+. +
T Consensus 7 ~v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fi-D------Rdp~~F~~IL~~lr~g~l~~p~-~ 78 (107)
T 3drz_A 7 WVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-D------RDPTYFGPVLNYLRHGKLVINK-D 78 (107)
T ss_dssp EEEEEETTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEE-C------SCHHHHHHHHHHHHHSCCCCCT-T
T ss_pred EEEEEECCEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEe-c------CChHHHHHHHHHhCCCeeCCCC-C
Confidence 3788999999999999998765 57888887542110 0111223333 3 5778999999999999987643 2
Q ss_pred cccccccccccCCCchhhhhHHHHHHHHHhhCcHHHHHHHHHc
Q 009554 143 VSTCVDNICVHDACRPAINFAVEMMYASSIFELPELVSLFQRR 185 (532)
Q Consensus 143 v~~cvd~~~~h~a~~~~~~~~~~~L~~A~~~~~~~lv~~ll~~ 185 (532)
+ ....++..|..|++.++++.|.+.
T Consensus 79 ~------------------~~~~l~~Ea~fy~l~~L~~~l~~~ 103 (107)
T 3drz_A 79 L------------------AEEGVLEEAEFYNITSLIKLVKDK 103 (107)
T ss_dssp S------------------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred C------------------CHHHHHHHHHHCCCHHHHHHHHHH
Confidence 1 125678999999999999998754
No 140
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=96.70 E-value=0.0022 Score=51.56 Aligned_cols=92 Identities=8% Similarity=0.041 Sum_probs=61.1
Q ss_pred eEEEE-cCeeEeeeeeehhhcCHHHHHHHhhccCCCCCCCCCeeecCCCCCCCccCHHHHHHHHhhhccCCcCCCCC-cc
Q 009554 66 AEIIV-EGIPVCVHRCILAARSKFFYELFKREKGSVDKEGKPKYPMSELLPYGKVGYEAFLIFLSYTYSGKLKPFPM-EV 143 (532)
Q Consensus 66 v~i~v-~g~~~~~Hr~iLaarS~~F~~~f~~~~~~~~~~~~~~i~l~~l~~~~~v~~~~~~~lL~ylYtg~l~~~~~-~v 143 (532)
|+++. +|..|.++|.+ |..|..++.||..++ +. ....|.|++ |+..+++.+++|.|.-+-...+. ..
T Consensus 6 v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~~~-e~---~~~~Iplp~------V~~~iL~kVieyc~~h~~~~~~~~~~ 74 (99)
T 1hv2_A 6 VTLVSKDDKEYEISRSA-AMISPTLKAMIEGPF-RE---SKGRIELKQ------FDSHILEKAVEYLNYNLKYSGVSEDD 74 (99)
T ss_dssp EEEEETTTEEEEEEHHH-HTTCHHHHHHHHSST-TT---CTTEEEETT------SCHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred EEEEecCCCEEEECHHH-HHHhHHHHHHHhccc-cc---CCCceecCC------cCHHHHHHHHHHHHHhcccCCCcccc
Confidence 66666 69999999997 889999999998754 31 235788887 88889999999999754221110 00
Q ss_pred ccccccccccCCCchhhhhHHHHHHHHHhhCc
Q 009554 144 STCVDNICVHDACRPAINFAVEMMYASSIFEL 175 (532)
Q Consensus 144 ~~cvd~~~~h~a~~~~~~~~~~~L~~A~~~~~ 175 (532)
...-++ .. ....+++++.+|..+++
T Consensus 75 ~~i~~w------~v-d~~~lfeLi~AAnyLdI 99 (99)
T 1hv2_A 75 DEIPEF------EI-PTEMSLELLLAADYLSI 99 (99)
T ss_dssp SSCCCC------CC-CHHHHHHHHHHHHHHCC
T ss_pred ccCCCc------cC-CHHHHHHHHHHHHHhCc
Confidence 000001 01 11455888888887764
No 141
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=96.55 E-value=0.0039 Score=49.76 Aligned_cols=90 Identities=14% Similarity=0.123 Sum_probs=58.1
Q ss_pred eEEEE-cCeeEeeeeeehhhcCHHHHHHHhhc-c-CCCCCCCCCeeecCCCCCCCccCHHHHHHHHhhhccCCcCC-CCC
Q 009554 66 AEIIV-EGIPVCVHRCILAARSKFFYELFKRE-K-GSVDKEGKPKYPMSELLPYGKVGYEAFLIFLSYTYSGKLKP-FPM 141 (532)
Q Consensus 66 v~i~v-~g~~~~~Hr~iLaarS~~F~~~f~~~-~-~~~~~~~~~~i~l~~l~~~~~v~~~~~~~lL~ylYtg~l~~-~~~ 141 (532)
|+++. +|..|.++|.+ |..|..++.||... . .|. ....|.|++ |+..+++.+++|.|..+-.. ...
T Consensus 3 v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~~~~~~e~---~~~~Ipl~~------V~~~iL~kVieyc~~h~~~~~~~~ 72 (96)
T 2fnj_C 3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAEN---ETNEVNFRE------IPSHVLSKVCMYFTYKVRYTNSST 72 (96)
T ss_dssp EEEECTTSCEEEEEHHH-HTTSHHHHHHHHCC-----------CEEECSS------CCHHHHHHHHHHHHHHHHHHSCCS
T ss_pred EEEEecCCCEEEeCHHH-HHHhHHHHHHHHccCCcccc---cCCceeCCC------CCHHHHHHHHHHHHHccccCCCcc
Confidence 45555 69999999997 88999999999752 1 221 224788877 88889999999998654211 111
Q ss_pred ccccccccccccCCCchhhhhHHHHHHHHHhhCc
Q 009554 142 EVSTCVDNICVHDACRPAINFAVEMMYASSIFEL 175 (532)
Q Consensus 142 ~v~~cvd~~~~h~a~~~~~~~~~~~L~~A~~~~~ 175 (532)
++. ++ .. ....+++++.+|..+++
T Consensus 73 ~i~---~w------~v-d~~~l~eLi~AAnyLdI 96 (96)
T 2fnj_C 73 EIP---EF------PI-APEIALELLMAANFLDC 96 (96)
T ss_dssp CCC---CC------CC-CTTTHHHHHHHHHHHTC
T ss_pred cCC---Cc------cc-CHHHHHHHHHHHHHhCc
Confidence 110 01 00 11456899999887753
No 142
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=95.01 E-value=0.051 Score=48.08 Aligned_cols=116 Identities=14% Similarity=0.178 Sum_probs=70.5
Q ss_pred ceEEEE-cCeeEeeeeeehhhcCHHHHHHHhhccCCC-CCCCCCeeecCCCCCCCccCHHHHHHHHhhhccCCcCCCCCc
Q 009554 65 DAEIIV-EGIPVCVHRCILAARSKFFYELFKREKGSV-DKEGKPKYPMSELLPYGKVGYEAFLIFLSYTYSGKLKPFPME 142 (532)
Q Consensus 65 Dv~i~v-~g~~~~~Hr~iLaarS~~F~~~f~~~~~~~-~~~~~~~i~l~~l~~~~~v~~~~~~~lL~ylYtg~l~~~~~~ 142 (532)
-|+++. +|..|.+++.+ |..|..++.|+.....+. .......|.|++ |+..++..|++|.+.-+-...+..
T Consensus 8 ~i~L~SsDG~~F~V~~~v-A~~S~tIk~ml~~~~~~~~~~~~~~~Iplpn------V~s~iL~kVieyc~~h~~~~~~~~ 80 (169)
T 3v7d_A 8 NVVLVSGEGERFTVDKKI-AERSLLLKNYLNDMGDDDDEDDDEIVMPVPN------VRSSVLQKVIEWAEHHRDSNFPDE 80 (169)
T ss_dssp EEEEECTTCCEEEEEHHH-HTTSHHHHHHHHC-----------CEEECTT------CCHHHHHHHHHHHHHTTTCCCCC-
T ss_pred eEEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcCcccccccCCCceeeCC------CCHHHHHHHHHHHHHcccCCCccc
Confidence 355554 48999999998 778999999997532210 000124677877 888899999999987654432210
Q ss_pred --cccc-cccccccC---CCchhhhhHHHHHHHHHhhCcHHHHHHHHHcCCC
Q 009554 143 --VSTC-VDNICVHD---ACRPAINFAVEMMYASSIFELPELVSLFQRRLLN 188 (532)
Q Consensus 143 --v~~c-vd~~~~h~---a~~~~~~~~~~~L~~A~~~~~~~lv~~ll~~~~~ 188 (532)
.... .+....-. -.. ....+++++.+|.++++..|+.++-+..++
T Consensus 81 ~~~~~~~~~~i~~wD~~Fl~v-d~~~LfeLi~AAnyLdIk~Lldl~c~~vA~ 131 (169)
T 3v7d_A 81 DDDDSRKSAPVDSWDREFLKV-DQEMLYEIILAANYLNIKPLLDAGCKVVAE 131 (169)
T ss_dssp -------CCCCCHHHHHHTCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccccccHHHHHHHcC-CHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 0000 00000000 001 124568999999999999999997665554
No 143
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=94.41 E-value=0.098 Score=47.25 Aligned_cols=95 Identities=19% Similarity=0.309 Sum_probs=66.2
Q ss_pred eEEEEcCeeEeeeeeehhhcC-HHHHHHHhhccCC-CCCCCCCeeecCCCCCCCccCHHHHHHHHhhhccCCcCCCCCcc
Q 009554 66 AEIIVEGIPVCVHRCILAARS-KFFYELFKREKGS-VDKEGKPKYPMSELLPYGKVGYEAFLIFLSYTYSGKLKPFPMEV 143 (532)
Q Consensus 66 v~i~v~g~~~~~Hr~iLaarS-~~F~~~f~~~~~~-~~~~~~~~i~l~~l~~~~~v~~~~~~~lL~ylYtg~l~~~~~~v 143 (532)
|+|.|+|..|...+..|.... .+|..||.+.+.- ...+....+-+ | -.+..|..||+|+-+|++..++ ++
T Consensus 14 V~LNVGG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFI-D------RDP~~F~~ILnyLRtG~L~lP~-~~ 85 (202)
T 3drx_A 14 VRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-D------RDPTYFGPVLNYLRHGKLVINK-DL 85 (202)
T ss_dssp EEEEETTEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEE-C------SCSTTHHHHHHHHHHSCCCCCT-TS
T ss_pred EEEEECCEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEe-c------CChHHHHHHHHHhcCCccCCCC-CC
Confidence 678999999999999998653 4788888654210 00112223333 3 2445999999999999987643 21
Q ss_pred ccccccccccCCCchhhhhHHHHHHHHHhhCcHHHHHHHHHcC
Q 009554 144 STCVDNICVHDACRPAINFAVEMMYASSIFELPELVSLFQRRL 186 (532)
Q Consensus 144 ~~cvd~~~~h~a~~~~~~~~~~~L~~A~~~~~~~lv~~ll~~~ 186 (532)
....++.-|..|++.++++.|.+..
T Consensus 86 ------------------~~~~l~eEA~FygL~~Lv~~l~~~i 110 (202)
T 3drx_A 86 ------------------AEEGVLEEAEFYNITSLIKLVKDKI 110 (202)
T ss_dssp ------------------CHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ------------------CHHHHHHHHHHCCcHHHHHHHHHHH
Confidence 1256889999999999999987654
No 144
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=92.08 E-value=0.12 Score=42.32 Aligned_cols=90 Identities=14% Similarity=0.106 Sum_probs=57.1
Q ss_pred eEEE-EcCeeEeeeeeehhhcCHHHHHHHhhc--cCCCCCCCCCeeecCCCCCCCccCHHHHHHHHhhhccCCcCC-CCC
Q 009554 66 AEII-VEGIPVCVHRCILAARSKFFYELFKRE--KGSVDKEGKPKYPMSELLPYGKVGYEAFLIFLSYTYSGKLKP-FPM 141 (532)
Q Consensus 66 v~i~-v~g~~~~~Hr~iLaarS~~F~~~f~~~--~~~~~~~~~~~i~l~~l~~~~~v~~~~~~~lL~ylYtg~l~~-~~~ 141 (532)
|+++ .+|..|.+.|. .|..|..++.|+... +.+. ....|.|++ |+..+++.+++|.+..+-.. ...
T Consensus 19 v~L~SsDG~~F~V~~~-~A~~S~tIk~ml~~~~~~~e~---~~~~Iplpn------V~s~iL~kVieyc~~h~~~~~~~~ 88 (112)
T 1vcb_B 19 VKLISSDGHEFIVKRE-HALTSGTIKAMLSGPGQFAEN---ETNEVNFRE------IPSHVLSKVCMYFTYKVRYTNSST 88 (112)
T ss_dssp EEEECTTSCEEEEEHH-HHHTSHHHHHHSSCC-----------CEEECSS------CCHHHHHHHHHHHHHHHHHSSCSS
T ss_pred EEEEcCCCCEEEECHH-HHHHhHHHHHHHHhcCCcccc---cCCceeCCC------CCHHHHHHHHHHHHHhhhccCCcC
Confidence 5666 35999999999 467899999999742 1220 124677777 88889999999998654221 111
Q ss_pred ccccccccccccCCCchhhhhHHHHHHHHHhhCc
Q 009554 142 EVSTCVDNICVHDACRPAINFAVEMMYASSIFEL 175 (532)
Q Consensus 142 ~v~~cvd~~~~h~a~~~~~~~~~~~L~~A~~~~~ 175 (532)
++. ++ .. ....+++++.+|..+++
T Consensus 89 ~i~---~w------~v-d~~~lfeLi~AAnyLdI 112 (112)
T 1vcb_B 89 EIP---EF------PI-APEIALELLMAANFLDC 112 (112)
T ss_dssp CCC---CC------CC-CHHHHHHHHHHHHHHTC
T ss_pred CCC---Cc------cc-CHHHHHHHHHHHHHhCc
Confidence 110 11 01 11456889988887754
No 145
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=77.96 E-value=1.1 Score=36.55 Aligned_cols=84 Identities=18% Similarity=0.067 Sum_probs=53.2
Q ss_pred eEEEEcCeeEeeeeeehhhcCH-HHHHHHhhccCCCCCCCCCeeecCCCCCCCccCHHHHHHHHhhhccCCcCCCCCccc
Q 009554 66 AEIIVEGIPVCVHRCILAARSK-FFYELFKREKGSVDKEGKPKYPMSELLPYGKVGYEAFLIFLSYTYSGKLKPFPMEVS 144 (532)
Q Consensus 66 v~i~v~g~~~~~Hr~iLaarS~-~F~~~f~~~~~~~~~~~~~~i~l~~l~~~~~v~~~~~~~lL~ylYtg~l~~~~~~v~ 144 (532)
|+|.|+|..|...+..|..-.. ++..||..... -++...++-+ | -.+..|..||+|+-+|++..++. +
T Consensus 7 V~LNVGG~~f~T~~~TL~~~P~s~L~~l~~~~~~--~~~~~g~~Fi-D------Rdp~~F~~ILnylR~G~l~~p~~-~- 75 (115)
T 3kvt_A 7 VIINVGGIRHETYKATLKKIPATRLSRLTEGMLN--YDPVLNEYFF-D------RHPGVFAQIINYYRSGKLHYPTD-V- 75 (115)
T ss_dssp EEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTT--EETTTTEEEE-C------SCTTTHHHHHHHHHHSCBCCCSS-S-
T ss_pred EEEEECCEEEEecHHHHhcCCCccHHHHhcCCCC--CCCCCCcEEE-e------cChHHHHHHHHHhcCCCCCCCCc-c-
Confidence 7889999999999999875532 33344432110 0012233433 2 24459999999999999876532 1
Q ss_pred cccccccccCCCchhhhhHHHHHHHHHhhCcHH
Q 009554 145 TCVDNICVHDACRPAINFAVEMMYASSIFELPE 177 (532)
Q Consensus 145 ~cvd~~~~h~a~~~~~~~~~~~L~~A~~~~~~~ 177 (532)
....++.-|..|++.+
T Consensus 76 -----------------~~~~~~~Ea~fy~i~~ 91 (115)
T 3kvt_A 76 -----------------CGPLFEEELEFWGLDS 91 (115)
T ss_dssp -----------------CHHHHHHHHHHHTCCG
T ss_pred -----------------cHHHHHHHHHHhCCCh
Confidence 1256777788888765
No 146
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Probab=77.16 E-value=3.9 Score=32.31 Aligned_cols=86 Identities=19% Similarity=0.126 Sum_probs=54.0
Q ss_pred eEEEEcCeeEeeeeeehhhcC-HHHHHHHhhccCCCCCCCCCeeecCCCCCCCccCHHHHHHHHhhhcc-CCcCCCCCcc
Q 009554 66 AEIIVEGIPVCVHRCILAARS-KFFYELFKREKGSVDKEGKPKYPMSELLPYGKVGYEAFLIFLSYTYS-GKLKPFPMEV 143 (532)
Q Consensus 66 v~i~v~g~~~~~Hr~iLaarS-~~F~~~f~~~~~~~~~~~~~~i~l~~l~~~~~v~~~~~~~lL~ylYt-g~l~~~~~~v 143 (532)
|+|.|+|..|-..+..|..-- ..+..|+.....- +....++-+ |- .+..|..+|.|+-+ |++..++ ++
T Consensus 3 v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~--~~~~~eyFi-DR------dp~~F~~ILnflR~~G~l~~p~-~~ 72 (100)
T 1t1d_A 3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYY--DPLRNEYFF-DR------NRPSFDAILYFYQSGGRLRRPV-NV 72 (100)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGGE--ETTTTEEEE-CS------CSTTHHHHHHHHHTTSCCCCCT-TS
T ss_pred EEEEECCEEEEeeHHHHhcCCCccccchhcccccc--CCCceeEEE-cC------ChHHHHHHHHHHhcCCcccCCC-CC
Confidence 689999999999999886431 1233344321100 002234444 32 44499999999998 8886543 22
Q ss_pred ccccccccccCCCchhhhhHHHHHHHHHhhCcHHHH
Q 009554 144 STCVDNICVHDACRPAINFAVEMMYASSIFELPELV 179 (532)
Q Consensus 144 ~~cvd~~~~h~a~~~~~~~~~~~L~~A~~~~~~~lv 179 (532)
.....+.-|..|++.+++
T Consensus 73 ------------------~~~~~~~Ea~fy~i~~~~ 90 (100)
T 1t1d_A 73 ------------------PLDVFSEEIKFYELGENA 90 (100)
T ss_dssp ------------------CHHHHHHHHHHTTCCHHH
T ss_pred ------------------CHHHHHHHHHHcCCCHHH
Confidence 135678888889987644
No 147
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=75.04 E-value=2.5 Score=34.92 Aligned_cols=85 Identities=15% Similarity=0.081 Sum_probs=52.8
Q ss_pred ceEEEEcCeeEeeeeeehhhcCHHHHHHHhhccCC-CCCCCCCeeecCCCCCCCccCHHHHHHHHhhhccCCcCCCCCcc
Q 009554 65 DAEIIVEGIPVCVHRCILAARSKFFYELFKREKGS-VDKEGKPKYPMSELLPYGKVGYEAFLIFLSYTYSGKLKPFPMEV 143 (532)
Q Consensus 65 Dv~i~v~g~~~~~Hr~iLaarS~~F~~~f~~~~~~-~~~~~~~~i~l~~l~~~~~v~~~~~~~lL~ylYtg~l~~~~~~v 143 (532)
=|+|.|+|..|-.-+..|..... .||...... .-++....+-+. -.+..|..||+|+-+|++..++ ++
T Consensus 14 ~V~LNVGG~~F~t~~~TL~~~p~---S~L~~~~~~~~~~~~~g~~FiD-------Rdp~~F~~ILnflR~G~l~~p~-~~ 82 (124)
T 1s1g_A 14 LIVLNVSGRRFQTWRTTLERYPD---TLLGSTEKEFFFNEDTKEYFFD-------RDPEVFRCVLNFYRTGKLHYPR-YE 82 (124)
T ss_dssp EEEEEETTEEEEEEHHHHTTSTT---SSTTSSGGGGTBCSSSCSEEEC-------SCHHHHHHHHHHHHHSCBCCCT-TS
T ss_pred EEEEEeCCEEEEEeHHHHhcCCC---ceecccCCcccccCCCCcEEEc-------CChHHHHHHHHHHhcCCCCCCC-Cc
Confidence 47889999999999998865322 233220000 000011222221 4778999999999999887543 21
Q ss_pred ccccccccccCCCchhhhhHHHHHHHHHhhCcHHH
Q 009554 144 STCVDNICVHDACRPAINFAVEMMYASSIFELPEL 178 (532)
Q Consensus 144 ~~cvd~~~~h~a~~~~~~~~~~~L~~A~~~~~~~l 178 (532)
....++.-|..|++..+
T Consensus 83 ------------------~~~~l~~Ea~fy~i~~l 99 (124)
T 1s1g_A 83 ------------------CISAYDDELAFYGILPE 99 (124)
T ss_dssp ------------------CHHHHHHHHHHTTCCGG
T ss_pred ------------------CHHHHHHHHHHcCCChH
Confidence 13667788888888765
No 148
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=71.17 E-value=3.4 Score=34.96 Aligned_cols=85 Identities=15% Similarity=0.068 Sum_probs=53.2
Q ss_pred ceEEEEcCeeEeeeeeehhhcCHHHHHHHhhccCC-CCCCCCCeeecCCCCCCCccCHHHHHHHHhhhccCCcCCCCCcc
Q 009554 65 DAEIIVEGIPVCVHRCILAARSKFFYELFKREKGS-VDKEGKPKYPMSELLPYGKVGYEAFLIFLSYTYSGKLKPFPMEV 143 (532)
Q Consensus 65 Dv~i~v~g~~~~~Hr~iLaarS~~F~~~f~~~~~~-~~~~~~~~i~l~~l~~~~~v~~~~~~~lL~ylYtg~l~~~~~~v 143 (532)
=|+|.|+|..|...+..|.... ..||...... .-++...++-+. -.+..|..||+|+-+|++...+ ++
T Consensus 36 ~V~LNVGG~~F~T~~~TL~~~P---~S~L~~~~~~~~~~~~~g~yFiD-------Rdp~~F~~ILnflR~G~l~~p~-~~ 104 (140)
T 2nz0_B 36 LIVLNVSGRRFQTWRTTLERYP---DTLLGSTEKEFFFNEDTKEYFFD-------RDPEVFRCVLNFYRTGKLHYPR-YE 104 (140)
T ss_dssp EEEEEETTEEEEEEHHHHHTCT---TSTTTSGGGGGSEETTTTEEEEC-------SCHHHHHHHHHHHHHSSBCCCT-TS
T ss_pred EEEEEECCEEEEeeHHHHhcCC---CeeecccCCcccccCCCCeEEEe-------CCcHHHHHHHHHHhcCCcCCCC-Cc
Confidence 4789999999999999886532 2233221000 000012233332 4778999999999999887543 21
Q ss_pred ccccccccccCCCchhhhhHHHHHHHHHhhCcHHH
Q 009554 144 STCVDNICVHDACRPAINFAVEMMYASSIFELPEL 178 (532)
Q Consensus 144 ~~cvd~~~~h~a~~~~~~~~~~~L~~A~~~~~~~l 178 (532)
....++.-|..|++..+
T Consensus 105 ------------------~~~~l~eEa~fy~i~~l 121 (140)
T 2nz0_B 105 ------------------CISAYDDELAFYGILPE 121 (140)
T ss_dssp ------------------CHHHHHHHHHHHTCCGG
T ss_pred ------------------CHHHHHHHHHHcCCChH
Confidence 13667778888888765
No 149
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.80 E-value=7.7 Score=30.74 Aligned_cols=52 Identities=8% Similarity=-0.052 Sum_probs=41.0
Q ss_pred CCCcHHHHHHHHHhCcHHHHHcccccccccccCcchhhhcCCcchHHHHHHHH
Q 009554 195 AEDIIPILLAAFHCQLSQLLAQCVDRIVRSDLDTISIEKELPTEVAEEIRMLR 247 (532)
Q Consensus 195 ~~n~~t~L~~A~~~~~~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~i~~lL 247 (532)
..||..++.+|..++...|.+.+.+++.+++.....-........ .++..+|
T Consensus 10 ~~NCl~i~~~A~~~~~~~L~~~a~~fi~~nF~~v~~~~eFl~L~~-~~L~~lL 61 (105)
T 2eqx_A 10 VGNCLQVMWLADRHSDPELYTAAKHCAKTHLAQLQNTEEFLHLPH-RLLTDII 61 (105)
T ss_dssp TTTHHHHHHHHHHTTCHHHHHHHHHHHHHTCHHHHTSHHHHHSCH-HHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcccHhhCCH-HHHHHHH
Confidence 789999999999999999999999999988866654444444444 6677777
No 150
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=46.06 E-value=8.3 Score=30.70 Aligned_cols=84 Identities=14% Similarity=0.091 Sum_probs=50.0
Q ss_pred eEEEEcCeeEeeeeeehhhcCHHHHHHHhhccCCC-CCCCCCeeecCCCCCCCccCHHHHHHHHhhhccCCcCCCCCccc
Q 009554 66 AEIIVEGIPVCVHRCILAARSKFFYELFKREKGSV-DKEGKPKYPMSELLPYGKVGYEAFLIFLSYTYSGKLKPFPMEVS 144 (532)
Q Consensus 66 v~i~v~g~~~~~Hr~iLaarS~~F~~~f~~~~~~~-~~~~~~~i~l~~l~~~~~v~~~~~~~lL~ylYtg~l~~~~~~v~ 144 (532)
|+|.|+|..|...+..|..... .||....... -.+....+-+ | -++..|..+|+|+-+|++..++. +
T Consensus 2 V~LNVGG~~f~t~~~TL~~~p~---s~L~~~~~~~~~~~~~~~~Fi-D------Rdp~~F~~ILnflR~g~l~~p~~-~- 69 (105)
T 1nn7_A 2 IVLNVSGTRFQTWQDTLERYPD---TLLGSSERDFFYHPETQQYFF-D------RDPDIFRHILNFYRTGKLHYPRH-E- 69 (105)
T ss_dssp EEEEETTEEEEECHHHHHTSCS---SSTTSGGGGGGEEGGGTEEEE-C------SCTTTHHHHHHHHHHSCBCCCTT-S-
T ss_pred EEEEECCEEEEEeHHHHhcCCC---ccccccCCcccccCCCCcEEE-e------CCcHHHHHHHHHHhcCCCCCCCC-c-
Confidence 7899999999999988865322 2232210000 0001123333 2 24559999999999998865432 1
Q ss_pred cccccccccCCCchhhhhHHHHHHHHHhhCcHHH
Q 009554 145 TCVDNICVHDACRPAINFAVEMMYASSIFELPEL 178 (532)
Q Consensus 145 ~cvd~~~~h~a~~~~~~~~~~~L~~A~~~~~~~l 178 (532)
....++.-|..|++..+
T Consensus 70 -----------------~~~~l~~Ea~fy~i~~l 86 (105)
T 1nn7_A 70 -----------------CISAYDEELAFFGLIPE 86 (105)
T ss_dssp -----------------CHHHHHHHHHHHTCCSC
T ss_pred -----------------CHHHHHHHHHHcCCCHH
Confidence 13567777777877653
No 151
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=40.05 E-value=12 Score=32.00 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=17.8
Q ss_pred CcccCC--CcceeeeeeeecceeeEe
Q 009554 502 NCEFSV--SSIFRYIYCLKFDTWYCY 525 (532)
Q Consensus 502 ~~~~~~--~~~~~~~~~~~~~~~~~~ 525 (532)
|+.=|+ |-. -.|..=|||||||-
T Consensus 118 ~~~c~~~~cg~-g~fma~h~~r~~cg 142 (152)
T 3u5c_f 118 RRECSNPTCGA-GVFLANHKDRLYCG 142 (152)
T ss_dssp SCBCCSTTSCS-SSBEEECSSCEEES
T ss_pred cCcCCCccCCC-ceEecccCCCcccC
Confidence 567788 855 34678899999994
No 152
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=37.52 E-value=13 Score=25.77 Aligned_cols=23 Identities=9% Similarity=-0.076 Sum_probs=18.0
Q ss_pred CcccCCCcceeeeeeeecceeeEe
Q 009554 502 NCEFSVSSIFRYIYCLKFDTWYCY 525 (532)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~ 525 (532)
++|=|.|.... |+.-+||+|||.
T Consensus 18 ~~fCPkCG~~~-~ma~~~dr~~C~ 40 (55)
T 2k4x_A 18 HRFCPRCGPGV-FLAEHADRYSCG 40 (55)
T ss_dssp SCCCTTTTTTC-CCEECSSEEECT
T ss_pred cccCcCCCCce-eEeccCCEEECC
Confidence 56889998755 466889999984
No 153
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=27.96 E-value=42 Score=21.13 Aligned_cols=19 Identities=32% Similarity=0.366 Sum_probs=15.4
Q ss_pred HHHHHhcCCCHHHHHHHHh
Q 009554 271 RIHKALDSDDVELVRLLLS 289 (532)
Q Consensus 271 ~Lh~A~~~g~~~~v~~Ll~ 289 (532)
-+..||..|+.+.+++|-.
T Consensus 16 qiyvA~seGd~etv~~Le~ 34 (40)
T 1gp8_A 16 QMDAAASKGDVETYRKLKA 34 (40)
T ss_dssp HHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHH
Confidence 4678999999999988853
No 154
>1whm_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=25.67 E-value=14 Score=28.54 Aligned_cols=42 Identities=21% Similarity=0.215 Sum_probs=30.8
Q ss_pred ccccccccccccCCCCCCCcccccCcCchhhhhhhhHHHHHHHHhh-----cCcccCCCcc
Q 009554 455 TETTSEFSGFCASKGSSGNLREVDLNETPVMRNKRLRPRMEALMKT-----GNCEFSVSSI 510 (532)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----g~~~~~~~~~ 510 (532)
..||..|.|....+...+-|-.|+|+|. +-|. |+|||-.|..
T Consensus 25 rrGtVrfvG~~~~~~~~G~wVGVelDEP--------------~GknDGsv~G~ryF~~c~~ 71 (92)
T 1whm_A 25 ESGTVIFCDVLPGKESLGYFVGVDMDNP--------------IGNWDGRFDGVQLCSFACV 71 (92)
T ss_dssp EEEEEEEEECCTTCTTTCCEEEEEESSS--------------CCCCCSEETTEESCSSCCT
T ss_pred eeEEEEEEecCCCcCCCCeEEEEEcCCC--------------CCCCCCeECCEEeccccCC
Confidence 5689999998765334466999999987 3343 9999966644
No 155
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=24.41 E-value=29 Score=30.69 Aligned_cols=23 Identities=13% Similarity=0.203 Sum_probs=18.1
Q ss_pred CcccCCCcceeeeeeeecceeeEe
Q 009554 502 NCEFSVSSIFRYIYCLKFDTWYCY 525 (532)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~ 525 (532)
++.-|+|- ..+|..-|||||||-
T Consensus 113 ~~~Cp~Cg-~g~fma~h~dR~~CG 135 (189)
T 2xzm_9 113 QKGCPKCG-PGIFMAKHYDRHYCG 135 (189)
T ss_dssp SEECSTTC-SSCEEEECSSCEEET
T ss_pred cccCCccC-CCccccCccCCCccC
Confidence 46778865 577888999999993
Done!