Query 009555
Match_columns 532
No_of_seqs 206 out of 1124
Neff 4.5
Searched_HMMs 46136
Date Thu Mar 28 14:32:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009555.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009555hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00083 HLH Helix-loop-helix d 99.2 1.5E-11 3.2E-16 95.9 4.2 53 333-385 4-59 (60)
2 smart00353 HLH helix loop heli 99.2 3.9E-11 8.5E-16 92.0 5.4 49 338-386 1-52 (53)
3 PF00010 HLH: Helix-loop-helix 99.2 1.9E-11 4.1E-16 95.1 3.2 49 334-382 2-55 (55)
4 KOG1318 Helix loop helix trans 98.8 4.8E-08 1E-12 104.0 11.9 58 331-388 231-292 (411)
5 KOG1319 bHLHZip transcription 98.3 5.7E-07 1.2E-11 87.0 3.9 66 333-398 62-134 (229)
6 cd04897 ACT_ACR_3 ACT domain-c 98.2 1.7E-05 3.7E-10 66.7 9.7 67 453-519 3-73 (75)
7 cd04895 ACT_ACR_1 ACT domain-c 98.1 2.5E-05 5.3E-10 65.3 9.1 68 453-520 3-70 (72)
8 cd04900 ACT_UUR-like_1 ACT dom 97.9 0.00014 3.1E-09 59.3 10.7 69 452-520 2-71 (73)
9 KOG4304 Transcriptional repres 97.9 5.7E-06 1.2E-10 83.7 2.1 56 331-386 30-93 (250)
10 KOG2483 Upstream transcription 97.8 4.4E-05 9.6E-10 76.6 7.8 65 331-395 57-124 (232)
11 cd04896 ACT_ACR-like_3 ACT dom 97.8 0.00016 3.4E-09 60.9 9.5 66 453-519 2-73 (75)
12 cd04927 ACT_ACR-like_2 Second 97.8 0.00019 4.2E-09 59.6 9.8 67 452-519 1-68 (76)
13 KOG3561 Aryl-hydrocarbon recep 97.7 2.6E-05 5.6E-10 89.4 4.4 52 333-384 20-75 (803)
14 cd04925 ACT_ACR_2 ACT domain-c 97.7 0.00056 1.2E-08 56.3 10.4 66 453-518 2-72 (74)
15 KOG2588 Predicted DNA-binding 97.6 0.00097 2.1E-08 77.3 14.4 66 331-396 274-340 (953)
16 cd04899 ACT_ACR-UUR-like_2 C-t 97.4 0.0022 4.7E-08 50.9 9.7 66 453-519 2-67 (70)
17 cd04926 ACT_ACR_4 C-terminal 97.2 0.0026 5.6E-08 52.1 9.1 66 453-519 3-68 (72)
18 cd04928 ACT_TyrKc Uncharacteri 97.2 0.0028 6.1E-08 52.5 9.2 65 453-519 3-68 (68)
19 cd04873 ACT_UUR-ACR-like ACT d 96.9 0.012 2.5E-07 46.1 9.8 66 453-519 2-67 (70)
20 PRK05007 PII uridylyl-transfer 96.8 0.0061 1.3E-07 71.5 10.7 71 449-519 806-879 (884)
21 PLN03217 transcription factor 96.7 0.0035 7.5E-08 54.3 5.8 50 346-395 20-75 (93)
22 PF13740 ACT_6: ACT domain; PD 96.7 0.017 3.6E-07 47.8 9.8 68 451-521 2-69 (76)
23 KOG0561 bHLH transcription fac 96.7 0.00085 1.8E-08 69.5 2.2 57 332-388 59-117 (373)
24 KOG3960 Myogenic helix-loop-he 96.6 0.0037 8E-08 63.4 5.7 61 331-391 116-178 (284)
25 KOG4029 Transcription factor H 96.5 0.0022 4.8E-08 63.7 4.0 60 331-390 107-170 (228)
26 cd04893 ACT_GcvR_1 ACT domains 96.5 0.033 7.2E-07 46.2 10.2 66 452-520 2-67 (77)
27 PF01842 ACT: ACT domain; Int 96.3 0.018 3.9E-07 44.5 7.1 61 453-517 2-64 (66)
28 PRK00275 glnD PII uridylyl-tra 96.2 0.03 6.5E-07 66.0 11.5 80 441-520 802-887 (895)
29 cd04869 ACT_GcvR_2 ACT domains 96.1 0.067 1.5E-06 43.7 10.0 66 454-521 2-73 (81)
30 PRK01759 glnD PII uridylyl-tra 96.1 0.026 5.6E-07 66.1 10.4 69 450-519 782-850 (854)
31 PRK04374 PII uridylyl-transfer 96.1 0.043 9.3E-07 64.5 11.8 78 441-518 784-866 (869)
32 PRK00194 hypothetical protein; 96.0 0.043 9.3E-07 46.2 8.6 71 451-522 3-73 (90)
33 PRK03381 PII uridylyl-transfer 95.9 0.062 1.3E-06 62.4 11.9 80 441-520 588-668 (774)
34 cd04870 ACT_PSP_1 CT domains f 95.9 0.071 1.5E-06 43.7 9.1 65 454-520 2-66 (75)
35 PRK05092 PII uridylyl-transfer 95.9 0.054 1.2E-06 64.0 11.4 83 441-523 831-919 (931)
36 PF13291 ACT_4: ACT domain; PD 95.9 0.12 2.5E-06 42.5 10.3 50 451-500 6-57 (80)
37 cd04872 ACT_1ZPV ACT domain pr 95.8 0.054 1.2E-06 45.6 8.4 69 452-521 2-70 (88)
38 cd04875 ACT_F4HF-DF N-terminal 95.7 0.099 2.1E-06 42.5 9.3 65 454-520 2-69 (74)
39 PRK03381 PII uridylyl-transfer 95.7 0.063 1.4E-06 62.4 11.1 67 450-518 706-772 (774)
40 TIGR01693 UTase_glnD [Protein- 95.5 0.084 1.8E-06 61.7 10.9 70 450-520 778-847 (850)
41 TIGR01693 UTase_glnD [Protein- 95.3 0.097 2.1E-06 61.2 10.8 72 449-520 666-742 (850)
42 COG2844 GlnD UTP:GlnB (protein 95.1 0.083 1.8E-06 61.4 9.2 81 441-522 779-861 (867)
43 PRK05007 PII uridylyl-transfer 95.1 0.14 3E-06 60.4 11.2 82 440-521 688-775 (884)
44 PRK01759 glnD PII uridylyl-tra 95.0 0.15 3.3E-06 59.9 11.1 81 440-520 664-750 (854)
45 cd04887 ACT_MalLac-Enz ACT_Mal 95.0 0.14 2.9E-06 41.0 7.6 48 454-501 2-50 (74)
46 PRK03059 PII uridylyl-transfer 94.7 0.17 3.7E-06 59.5 10.7 66 450-518 785-854 (856)
47 cd04886 ACT_ThrD-II-like C-ter 94.5 0.3 6.4E-06 37.8 8.4 47 454-500 1-52 (73)
48 PRK05092 PII uridylyl-transfer 94.1 0.46 9.9E-06 56.4 12.3 81 440-520 719-806 (931)
49 cd04888 ACT_PheB-BS C-terminal 94.0 0.24 5.2E-06 39.6 7.0 49 452-500 1-50 (76)
50 KOG3910 Helix loop helix trans 93.8 0.079 1.7E-06 58.4 4.9 59 331-389 524-586 (632)
51 PRK03059 PII uridylyl-transfer 93.6 0.44 9.5E-06 56.2 11.0 79 441-520 666-751 (856)
52 cd04894 ACT_ACR-like_1 ACT dom 93.5 0.35 7.7E-06 40.2 7.1 65 453-517 2-67 (69)
53 PRK00275 glnD PII uridylyl-tra 93.2 0.5 1.1E-05 55.9 10.7 70 450-519 703-778 (895)
54 PRK04435 hypothetical protein; 93.0 0.55 1.2E-05 44.0 8.6 54 447-500 65-119 (147)
55 cd04876 ACT_RelA-SpoT ACT dom 93.0 0.7 1.5E-05 34.1 7.6 47 454-500 1-48 (71)
56 cd02116 ACT ACT domains are co 92.5 0.71 1.5E-05 32.1 6.8 35 454-488 1-35 (60)
57 cd04877 ACT_TyrR N-terminal AC 92.1 0.46 9.9E-06 38.7 6.1 45 453-500 2-46 (74)
58 PRK13011 formyltetrahydrofolat 91.8 1.2 2.6E-05 46.2 10.1 72 451-522 7-78 (286)
59 cd04881 ACT_HSDH-Hom ACT_HSDH_ 91.7 0.6 1.3E-05 36.6 6.1 48 453-500 2-51 (79)
60 PRK04374 PII uridylyl-transfer 91.5 1.5 3.2E-05 52.0 11.6 72 449-520 688-761 (869)
61 PRK06027 purU formyltetrahydro 91.0 1.7 3.6E-05 45.1 10.2 72 451-523 6-79 (286)
62 cd04880 ACT_AAAH-PDT-like ACT 91.0 1.9 4.1E-05 35.0 8.6 46 455-500 3-49 (75)
63 cd04905 ACT_CM-PDT C-terminal 90.6 2.7 5.8E-05 34.6 9.3 60 453-514 3-63 (80)
64 cd04874 ACT_Af1403 N-terminal 90.4 2.3 5E-05 32.8 8.3 45 453-497 2-47 (72)
65 cd04878 ACT_AHAS N-terminal AC 90.3 1.6 3.5E-05 33.5 7.3 47 453-499 2-50 (72)
66 PRK13010 purU formyltetrahydro 90.1 1.6 3.5E-05 45.4 9.2 72 451-522 9-82 (289)
67 KOG3560 Aryl-hydrocarbon recep 90.0 0.27 5.9E-06 54.9 3.7 38 342-379 34-75 (712)
68 PRK08577 hypothetical protein; 89.6 3.2 6.9E-05 38.0 9.8 65 450-515 55-121 (136)
69 cd04879 ACT_3PGDH-like ACT_3PG 89.6 2.1 4.5E-05 32.7 7.3 58 454-516 2-61 (71)
70 TIGR00655 PurU formyltetrahydr 89.5 2.8 6.2E-05 43.4 10.4 68 453-521 2-71 (280)
71 cd04903 ACT_LSD C-terminal ACT 88.9 2.1 4.6E-05 32.8 7.0 58 454-516 2-61 (71)
72 cd04909 ACT_PDH-BS C-terminal 88.3 3.2 6.8E-05 32.8 7.8 35 453-487 3-37 (69)
73 cd04883 ACT_AcuB C-terminal AC 88.2 5.5 0.00012 31.4 9.1 47 453-499 3-51 (72)
74 PRK07334 threonine dehydratase 88.1 2.1 4.5E-05 46.0 8.6 50 451-500 326-380 (403)
75 cd04884 ACT_CBS C-terminal ACT 87.5 3.7 8.1E-05 33.0 7.8 46 454-499 2-50 (72)
76 cd04882 ACT_Bt0572_2 C-termina 87.2 2.6 5.6E-05 32.4 6.5 44 454-497 2-47 (65)
77 cd04908 ACT_Bt0572_1 N-termina 86.7 5.5 0.00012 31.6 8.3 45 453-499 3-47 (66)
78 KOG3558 Hypoxia-inducible fact 85.4 0.52 1.1E-05 54.1 2.3 47 333-379 46-96 (768)
79 KOG4447 Transcription factor T 85.4 0.51 1.1E-05 45.3 1.9 51 333-383 78-130 (173)
80 KOG3559 Transcriptional regula 85.2 0.84 1.8E-05 49.7 3.7 43 338-380 6-52 (598)
81 PRK11589 gcvR glycine cleavage 85.1 2.5 5.5E-05 41.5 6.7 68 450-520 7-74 (190)
82 cd04931 ACT_PAH ACT domain of 82.7 10 0.00022 33.0 8.7 61 452-515 15-76 (90)
83 cd04889 ACT_PDH-BS-like C-term 82.5 5 0.00011 30.6 6.1 45 454-498 1-46 (56)
84 cd04904 ACT_AAAH ACT domain of 82.4 8.7 0.00019 31.6 7.9 59 455-517 4-63 (74)
85 COG3830 ACT domain-containing 82.0 2.8 6.2E-05 36.9 5.0 71 451-522 3-73 (90)
86 COG4492 PheB ACT domain-contai 80.5 8.1 0.00018 36.6 7.7 67 449-516 70-137 (150)
87 cd04901 ACT_3PGDH C-terminal A 79.7 2.2 4.8E-05 33.4 3.3 56 455-515 3-58 (69)
88 PRK10872 relA (p)ppGpp synthet 79.6 8.5 0.00019 45.2 9.3 61 441-501 651-718 (743)
89 PF05088 Bac_GDH: Bacterial NA 78.8 11 0.00024 47.6 10.3 74 450-523 488-566 (1528)
90 KOG3898 Transcription factor N 78.1 4.7 0.0001 41.4 6.0 52 332-383 71-125 (254)
91 PRK13562 acetolactate synthase 78.1 6.3 0.00014 34.4 5.8 64 453-518 4-69 (84)
92 PRK06737 acetolactate synthase 77.9 6.7 0.00015 33.4 5.9 63 452-517 3-67 (76)
93 COG2844 GlnD UTP:GlnB (protein 77.6 10 0.00022 44.9 9.0 79 442-520 675-757 (867)
94 PRK11152 ilvM acetolactate syn 77.6 9 0.00019 32.6 6.6 62 453-518 5-68 (76)
95 PRK11092 bifunctional (p)ppGpp 77.0 11 0.00024 43.9 9.2 60 441-500 611-676 (702)
96 PRK11895 ilvH acetolactate syn 76.6 9.9 0.00022 36.6 7.4 64 453-519 4-69 (161)
97 CHL00100 ilvH acetohydroxyacid 76.1 12 0.00027 36.4 8.0 67 453-522 4-72 (174)
98 TIGR00119 acolac_sm acetolacta 75.6 9.9 0.00021 36.4 7.0 63 453-518 3-67 (157)
99 cd04902 ACT_3PGDH-xct C-termin 75.1 8.8 0.00019 30.1 5.6 57 455-516 3-61 (73)
100 TIGR00691 spoT_relA (p)ppGpp s 74.1 30 0.00064 40.3 11.6 60 441-500 595-660 (683)
101 PF13710 ACT_5: ACT domain; PD 73.8 8.6 0.00019 31.1 5.3 55 460-517 1-57 (63)
102 PRK00227 glnD PII uridylyl-tra 71.8 17 0.00036 42.5 8.9 71 452-523 547-618 (693)
103 cd04922 ACT_AKi-HSDH-ThrA_2 AC 70.7 26 0.00057 26.9 7.3 34 453-486 3-39 (66)
104 cd04929 ACT_TPH ACT domain of 70.5 34 0.00074 28.6 8.3 56 457-516 6-62 (74)
105 COG0788 PurU Formyltetrahydrof 69.7 22 0.00047 37.3 8.3 74 450-523 6-80 (287)
106 cd04885 ACT_ThrD-I Tandem C-te 64.5 22 0.00047 28.5 5.8 45 455-500 2-47 (68)
107 KOG3582 Mlx interactors and re 64.2 7.8 0.00017 45.0 4.2 62 332-393 650-716 (856)
108 cd04930 ACT_TH ACT domain of t 64.0 44 0.00096 30.3 8.3 48 453-500 43-91 (115)
109 cd04892 ACT_AK-like_2 ACT doma 63.2 40 0.00087 24.9 6.8 34 453-486 2-38 (65)
110 PRK11589 gcvR glycine cleavage 62.4 55 0.0012 32.3 9.2 68 452-521 96-169 (190)
111 cd04919 ACT_AK-Hom3_2 ACT doma 62.0 50 0.0011 25.5 7.4 29 460-488 13-41 (66)
112 TIGR01127 ilvA_1Cterm threonin 59.1 53 0.0011 34.9 9.2 53 448-500 302-359 (380)
113 PRK08198 threonine dehydratase 57.9 52 0.0011 35.3 8.9 52 448-499 324-380 (404)
114 KOG4395 Transcription factor A 57.6 14 0.0003 38.3 4.3 52 333-384 174-228 (285)
115 cd04916 ACT_AKiii-YclM-BS_2 AC 57.3 64 0.0014 24.7 7.2 33 454-486 4-39 (66)
116 cd04924 ACT_AK-Arch_2 ACT doma 56.2 67 0.0014 24.5 7.1 33 454-486 4-39 (66)
117 cd04906 ACT_ThrD-I_1 First of 55.3 87 0.0019 26.3 8.2 47 452-500 2-49 (85)
118 PRK06382 threonine dehydratase 53.8 59 0.0013 35.1 8.6 53 448-500 327-384 (406)
119 PRK08178 acetolactate synthase 53.2 50 0.0011 29.5 6.5 64 451-518 8-73 (96)
120 cd04868 ACT_AK-like ACT domain 52.5 60 0.0013 23.4 6.0 26 461-486 13-38 (60)
121 PRK11899 prephenate dehydratas 50.5 1.1E+02 0.0025 31.8 9.7 68 452-521 195-263 (279)
122 cd04937 ACT_AKi-DapG-BS_2 ACT 48.7 95 0.0021 24.4 7.0 22 460-481 13-34 (64)
123 cd04890 ACT_AK-like_1 ACT doma 47.9 1.2E+02 0.0026 23.3 7.3 35 460-496 12-46 (62)
124 cd04918 ACT_AK1-AT_2 ACT domai 43.6 81 0.0018 25.0 5.9 33 460-492 12-44 (65)
125 COG0317 SpoT Guanosine polypho 41.2 77 0.0017 37.3 7.4 62 439-500 610-677 (701)
126 PRK15385 magnesium transport p 40.0 2E+02 0.0043 29.5 9.3 39 450-488 141-181 (225)
127 PF02120 Flg_hook: Flagellar h 39.3 96 0.0021 25.5 5.9 47 441-487 27-79 (85)
128 cd04915 ACT_AK-Ectoine_2 ACT d 37.8 96 0.0021 24.9 5.5 51 461-518 14-64 (66)
129 cd04923 ACT_AK-LysC-DapG-like_ 37.6 1.7E+02 0.0037 21.8 7.1 25 460-484 12-36 (63)
130 PLN02705 beta-amylase 36.9 1.2E+02 0.0026 35.4 7.8 28 331-358 82-109 (681)
131 COG2061 ACT-domain-containing 36.4 1.7E+02 0.0037 28.7 7.7 48 452-499 6-56 (170)
132 COG3978 Acetolactate synthase 36.0 2E+02 0.0043 25.4 7.3 64 452-519 4-69 (86)
133 KOG3582 Mlx interactors and re 35.9 10 0.00023 44.0 -0.5 63 331-396 785-852 (856)
134 PRK00907 hypothetical protein; 34.5 1.2E+02 0.0027 26.7 6.0 65 452-522 18-86 (92)
135 cd04921 ACT_AKi-HSDH-ThrA-like 33.5 2.1E+02 0.0044 23.0 6.9 26 460-485 13-38 (80)
136 cd04912 ACT_AKiii-LysC-EC-like 33.4 1.7E+02 0.0037 23.8 6.4 42 453-496 3-47 (75)
137 PRK14637 hypothetical protein; 33.0 1.6E+02 0.0036 28.0 7.1 61 459-519 5-66 (151)
138 PF04420 CHD5: CHD5-like prote 31.9 1.1E+02 0.0025 29.1 5.9 53 335-398 36-88 (161)
139 KOG4447 Transcription factor T 31.1 30 0.00064 33.6 1.7 23 340-362 29-51 (173)
140 PRK08526 threonine dehydratase 29.7 2.1E+02 0.0046 31.1 8.2 53 448-500 323-380 (403)
141 PRK11898 prephenate dehydratas 29.0 3E+02 0.0065 28.6 8.8 65 453-519 198-264 (283)
142 COG0077 PheA Prephenate dehydr 28.9 2.9E+02 0.0062 29.2 8.6 67 453-521 196-263 (279)
143 cd04933 ACT_AK1-AT_1 ACT domai 28.6 2.4E+02 0.0052 23.9 6.7 42 453-496 3-47 (78)
144 PF02344 Myc-LZ: Myc leucine z 28.0 58 0.0013 23.8 2.4 16 342-357 14-29 (32)
145 cd04932 ACT_AKiii-LysC-EC_1 AC 27.7 3.5E+02 0.0077 22.4 8.5 56 459-520 12-67 (75)
146 PRK10622 pheA bifunctional cho 27.7 3.5E+02 0.0077 29.5 9.4 64 456-521 302-366 (386)
147 TIGR01268 Phe4hydrox_tetr phen 26.9 2.5E+02 0.0055 31.4 8.1 61 454-517 19-80 (436)
148 PLN02317 arogenate dehydratase 25.7 3.4E+02 0.0074 29.9 8.8 57 459-517 291-362 (382)
149 PRK02047 hypothetical protein; 25.6 2.1E+02 0.0045 25.0 5.9 65 452-522 17-85 (91)
150 PRK00227 glnD PII uridylyl-tra 25.5 1E+02 0.0023 36.2 5.2 60 452-519 632-691 (693)
151 cd04920 ACT_AKiii-DAPDC_2 ACT 25.2 3.1E+02 0.0067 21.7 6.4 23 460-482 12-34 (63)
152 cd04935 ACT_AKiii-DAPDC_1 ACT 25.1 2.8E+02 0.0061 22.9 6.4 36 459-496 12-47 (75)
153 PF06005 DUF904: Protein of un 24.9 1.3E+02 0.0029 25.4 4.4 24 371-394 13-36 (72)
154 COG4747 ACT domain-containing 24.8 2.2E+02 0.0047 27.0 6.1 40 453-492 5-44 (142)
155 COG2716 GcvR Glycine cleavage 24.8 2.4E+02 0.0053 27.9 6.7 71 450-520 91-165 (176)
156 PRK06291 aspartate kinase; Pro 24.6 3.4E+02 0.0074 30.0 8.7 43 446-488 316-361 (465)
157 PRK10222 PTS system L-ascorbat 24.6 2.7E+02 0.0059 23.8 6.4 57 467-523 6-81 (85)
158 PRK00341 hypothetical protein; 24.5 2E+02 0.0043 25.2 5.6 48 452-500 18-69 (91)
159 PRK14639 hypothetical protein; 24.3 2.1E+02 0.0046 26.9 6.1 53 468-520 3-56 (140)
160 cd04934 ACT_AK-Hom3_1 CT domai 23.8 3.3E+02 0.0071 22.5 6.5 41 454-496 4-47 (73)
161 PRK06291 aspartate kinase; Pro 23.4 3.5E+02 0.0075 30.0 8.5 46 447-492 394-442 (465)
162 PF08826 DMPK_coil: DMPK coile 23.2 1.6E+02 0.0034 24.4 4.4 28 369-396 32-59 (61)
163 COG3074 Uncharacterized protei 22.7 1.4E+02 0.0031 25.6 4.1 24 371-394 13-36 (79)
164 cd04936 ACT_AKii-LysC-BS-like_ 22.5 3.3E+02 0.0072 20.2 7.0 25 460-484 12-36 (63)
165 cd04871 ACT_PSP_2 ACT domains 22.2 94 0.002 26.3 3.1 63 454-519 2-74 (84)
166 TIGR00656 asp_kin_monofn aspar 22.1 4.4E+02 0.0095 28.2 8.8 41 445-485 254-297 (401)
167 PF07941 K_channel_TID: Potass 22.0 56 0.0012 27.6 1.6 14 3-16 25-38 (75)
168 TIGR01270 Trp_5_monoox tryptop 20.9 3.6E+02 0.0078 30.5 8.0 48 453-500 33-82 (464)
169 PF13840 ACT_7: ACT domain ; P 20.7 1.8E+02 0.0039 23.3 4.3 35 449-483 4-42 (65)
170 TIGR00656 asp_kin_monofn aspar 20.4 4.8E+02 0.01 27.9 8.6 34 450-483 336-372 (401)
171 PRK04998 hypothetical protein; 20.1 4E+02 0.0087 22.9 6.6 65 452-522 16-82 (88)
No 1
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.19 E-value=1.5e-11 Score=95.91 Aligned_cols=53 Identities=34% Similarity=0.610 Sum_probs=50.3
Q ss_pred CCCcchhhHHHHHHHHHHHHHHhhccCCCC---CCCCccchHHHHHHHHHHHHHHH
Q 009555 333 KPTKHFATERQRREQLNGKFKALKDLVPNP---TKNDRASVVGDAIEYIKELLRTV 385 (532)
Q Consensus 333 ~~~~H~~aER~RR~klnekf~~LrsLvP~~---~K~DKaSIL~dAI~YIk~Lq~~v 385 (532)
++..|+..||+||++||+.|..|+.+||.. .|+||++||..||+||+.|+.++
T Consensus 4 ~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 4 RREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 567899999999999999999999999988 89999999999999999999876
No 2
>smart00353 HLH helix loop helix domain.
Probab=99.17 E-value=3.9e-11 Score=91.95 Aligned_cols=49 Identities=39% Similarity=0.611 Sum_probs=45.4
Q ss_pred hhhHHHHHHHHHHHHHHhhccCCC---CCCCCccchHHHHHHHHHHHHHHHH
Q 009555 338 FATERQRREQLNGKFKALKDLVPN---PTKNDRASVVGDAIEYIKELLRTVN 386 (532)
Q Consensus 338 ~~aER~RR~klnekf~~LrsLvP~---~~K~DKaSIL~dAI~YIk~Lq~~v~ 386 (532)
+..||+||++||+.|..|+++||. ..|++|++||..||+||++|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 368999999999999999999994 5799999999999999999999876
No 3
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.15 E-value=1.9e-11 Score=95.08 Aligned_cols=49 Identities=41% Similarity=0.686 Sum_probs=46.1
Q ss_pred CCcchhhHHHHHHHHHHHHHHhhccCCCC-----CCCCccchHHHHHHHHHHHH
Q 009555 334 PTKHFATERQRREQLNGKFKALKDLVPNP-----TKNDRASVVGDAIEYIKELL 382 (532)
Q Consensus 334 ~~~H~~aER~RR~klnekf~~LrsLvP~~-----~K~DKaSIL~dAI~YIk~Lq 382 (532)
+..|+..||+||++||+.|..|+.+||.. .|.+|++||..||+||++||
T Consensus 2 R~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 2 RQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 46799999999999999999999999976 68999999999999999997
No 4
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=98.77 E-value=4.8e-08 Score=104.03 Aligned_cols=58 Identities=31% Similarity=0.578 Sum_probs=53.0
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHhhccCCCC----CCCCccchHHHHHHHHHHHHHHHHHH
Q 009555 331 AGKPTKHFATERQRREQLNGKFKALKDLVPNP----TKNDRASVVGDAIEYIKELLRTVNEL 388 (532)
Q Consensus 331 ~s~~~~H~~aER~RR~klnekf~~LrsLvP~~----~K~DKaSIL~dAI~YIk~Lq~~v~~L 388 (532)
+.||..|+..|||||++||+++.+|..|||.+ .|..|..||..+++||++||+..++.
T Consensus 231 r~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~ 292 (411)
T KOG1318|consen 231 RRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRA 292 (411)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHH
Confidence 45889999999999999999999999999987 47789999999999999999988744
No 5
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.28 E-value=5.7e-07 Score=87.01 Aligned_cols=66 Identities=24% Similarity=0.371 Sum_probs=57.8
Q ss_pred CCCcchhhHHHHHHHHHHHHHHhhccCCCC-------CCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 009555 333 KPTKHFATERQRREQLNGKFKALKDLVPNP-------TKNDRASVVGDAIEYIKELLRTVNELKLLVEKKRCV 398 (532)
Q Consensus 333 ~~~~H~~aER~RR~klnekf~~LrsLvP~~-------~K~DKaSIL~dAI~YIk~Lq~~v~~L~~~~e~~r~~ 398 (532)
++..|.-+||+||+.||.-|..|+.|||-+ .|..||.||..+|+||.+|..++.+-++++..++..
T Consensus 62 rr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k~ 134 (229)
T KOG1319|consen 62 RRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRKD 134 (229)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999965 378899999999999999999988887777555443
No 6
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.15 E-value=1.7e-05 Score=66.72 Aligned_cols=67 Identities=13% Similarity=0.169 Sum_probs=57.6
Q ss_pred EEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeCcEEEEEEEEEEccCCccCH----HHHHHHHHHHHH
Q 009555 453 TIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIGDYYSFLFNTKIYEGSSVYA----GSIANKLIEVMD 519 (532)
Q Consensus 453 ~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg~~vi~tI~aKV~eGs~v~a----e~IkqaL~eaL~ 519 (532)
.|+|.|++|+|+|.+|.++|-.+|++|.+|.|++.|+++.-.|.++-.+|..+.. +.|.++|.+++.
T Consensus 3 vveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~ 73 (75)
T cd04897 3 VVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIE 73 (75)
T ss_pred EEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHh
Confidence 5899999999999999999999999999999999999999999998888888743 345555555554
No 7
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.08 E-value=2.5e-05 Score=65.28 Aligned_cols=68 Identities=18% Similarity=0.215 Sum_probs=59.2
Q ss_pred EEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeCcEEEEEEEEEEccCCccCHHHHHHHHHHHHHH
Q 009555 453 TIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIGDYYSFLFNTKIYEGSSVYAGSIANKLIEVMDK 520 (532)
Q Consensus 453 ~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg~~vi~tI~aKV~eGs~v~ae~IkqaL~eaL~~ 520 (532)
.|+|.+.+|+|+|.+|.++|.++||+|..|.|++.|+++.-+|.+.-.+|..+.-.+..+.|.++|..
T Consensus 3 viev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~~ 70 (72)
T cd04895 3 LVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLGT 70 (72)
T ss_pred EEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhcc
Confidence 58999999999999999999999999999999999999999999987778888655555567766643
No 8
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.92 E-value=0.00014 Score=59.30 Aligned_cols=69 Identities=12% Similarity=0.105 Sum_probs=55.7
Q ss_pred EEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEee-CcEEEEEEEEEEccCCccCHHHHHHHHHHHHHH
Q 009555 452 VTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHI-GDYYSFLFNTKIYEGSSVYAGSIANKLIEVMDK 520 (532)
Q Consensus 452 V~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~v-g~~vi~tI~aKV~eGs~v~ae~IkqaL~eaL~~ 520 (532)
..|.|.|.+++|+|.+|..+|..+||+|+.|.+.+. +++++-+|.+.-.+|..+..++-.++|.+.|.+
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~ 71 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALED 71 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHh
Confidence 357889999999999999999999999999999877 689999999876666666544545556665543
No 9
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=97.87 E-value=5.7e-06 Score=83.67 Aligned_cols=56 Identities=23% Similarity=0.443 Sum_probs=50.1
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHhhccCCCC--------CCCCccchHHHHHHHHHHHHHHHH
Q 009555 331 AGKPTKHFATERQRREQLNGKFKALKDLVPNP--------TKNDRASVVGDAIEYIKELLRTVN 386 (532)
Q Consensus 331 ~s~~~~H~~aER~RR~klnekf~~LrsLvP~~--------~K~DKaSIL~dAI~YIk~Lq~~v~ 386 (532)
..++..|-+.||+||.|||+.+.+|+.|||.. +|++||-||.-|++|+++|+...+
T Consensus 30 ~~rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~ 93 (250)
T KOG4304|consen 30 QYRKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQ 93 (250)
T ss_pred HHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcccc
Confidence 56788899999999999999999999999943 688999999999999999987654
No 10
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=97.84 E-value=4.4e-05 Score=76.56 Aligned_cols=65 Identities=31% Similarity=0.391 Sum_probs=55.5
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHhhccCCCC--CCCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009555 331 AGKPTKHFATERQRREQLNGKFKALKDLVPNP--TKND-RASVVGDAIEYIKELLRTVNELKLLVEKK 395 (532)
Q Consensus 331 ~s~~~~H~~aER~RR~klnekf~~LrsLvP~~--~K~D-KaSIL~dAI~YIk~Lq~~v~~L~~~~e~~ 395 (532)
.+.+..|+.-||+||..|++.|..|+.+||.. .+.. .++||..|++||+.|+.+..+....+|++
T Consensus 57 ~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~e~l 124 (232)
T KOG2483|consen 57 ASSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDIEDL 124 (232)
T ss_pred CcchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHHHHH
Confidence 56889999999999999999999999999976 2333 68999999999999998887776655543
No 11
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.81 E-value=0.00016 Score=60.94 Aligned_cols=66 Identities=14% Similarity=0.089 Sum_probs=55.6
Q ss_pred EEEEEecCCCChHHHHHHHHHHcCCcEEEEEEE--eeCcEEEEEEEEEEccCCccC----HHHHHHHHHHHHH
Q 009555 453 TIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGG--HIGDYYSFLFNTKIYEGSSVY----AGSIANKLIEVMD 519 (532)
Q Consensus 453 ~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS--~vg~~vi~tI~aKV~eGs~v~----ae~IkqaL~eaL~ 519 (532)
.|+|.|.+|+|+|.+|.++|..+|++|..|.|+ +.|+++.-+|.+ -.+|..+. .+.|+++|.+++.
T Consensus 2 vlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~kl~d~~~~~~L~~~L~~~l~ 73 (75)
T cd04896 2 LLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKKIMDPKKQAALCARLREEMV 73 (75)
T ss_pred EEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCccCCHHHHHHHHHHHHHHhc
Confidence 478999999999999999999999999999999 999999999999 45565553 3456666666654
No 12
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.81 E-value=0.00019 Score=59.61 Aligned_cols=67 Identities=18% Similarity=0.091 Sum_probs=51.6
Q ss_pred EEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEe-eCcEEEEEEEEEEccCCccCHHHHHHHHHHHHH
Q 009555 452 VTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGH-IGDYYSFLFNTKIYEGSSVYAGSIANKLIEVMD 519 (532)
Q Consensus 452 V~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~-vg~~vi~tI~aKV~eGs~v~ae~IkqaL~eaL~ 519 (532)
+.|+|.|++|+|+|.++..+|..+||.|+.|.+++ .+++++-+|.+.-.+|. ...++..++|.+.|.
T Consensus 1 ~~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~-~~~~~~~~~l~~~L~ 68 (76)
T cd04927 1 FLLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDAREL-LHTKKRREETYDYLR 68 (76)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCC-CCCHHHHHHHHHHHH
Confidence 46899999999999999999999999999999996 78999999999744333 322333334444443
No 13
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=97.72 E-value=2.6e-05 Score=89.41 Aligned_cols=52 Identities=25% Similarity=0.446 Sum_probs=48.9
Q ss_pred CCCcchhhHHHHHHHHHHHHHHhhccCCCC----CCCCccchHHHHHHHHHHHHHH
Q 009555 333 KPTKHFATERQRREQLNGKFKALKDLVPNP----TKNDRASVVGDAIEYIKELLRT 384 (532)
Q Consensus 333 ~~~~H~~aER~RR~klnekf~~LrsLvP~~----~K~DKaSIL~dAI~YIk~Lq~~ 384 (532)
+++.|+.+||+||++||.-+.+|.+|||.. -|+||.+||..||.+||.+++.
T Consensus 20 ~Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 20 KRENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 589999999999999999999999999976 4999999999999999999884
No 14
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.67 E-value=0.00056 Score=56.33 Aligned_cols=66 Identities=20% Similarity=0.216 Sum_probs=53.0
Q ss_pred EEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeCcEEEEEEEEEEcc-CCccCH----HHHHHHHHHHH
Q 009555 453 TIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIGDYYSFLFNTKIYE-GSSVYA----GSIANKLIEVM 518 (532)
Q Consensus 453 ~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg~~vi~tI~aKV~e-Gs~v~a----e~IkqaL~eaL 518 (532)
.|+|.+.+++|+|.+|..+|.++|+.|+.|.+.+.++++..+|.+.-.+ |..+.. +.|.++|.+++
T Consensus 2 ~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l 72 (74)
T cd04925 2 AIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVL 72 (74)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHh
Confidence 5889999999999999999999999999999999999999999887544 544433 44555554444
No 15
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=97.58 E-value=0.00097 Score=77.33 Aligned_cols=66 Identities=36% Similarity=0.498 Sum_probs=59.3
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHhhccCCCC-CCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009555 331 AGKPTKHFATERQRREQLNGKFKALKDLVPNP-TKNDRASVVGDAIEYIKELLRTVNELKLLVEKKR 396 (532)
Q Consensus 331 ~s~~~~H~~aER~RR~klnekf~~LrsLvP~~-~K~DKaSIL~dAI~YIk~Lq~~v~~L~~~~e~~r 396 (532)
+.+|..|++.||+-|..||+|+.+|+.+||.. .|..|.++|..||+||++|+...+.++.+.+..+
T Consensus 274 ~~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~l~ 340 (953)
T KOG2588|consen 274 GEKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENASLR 340 (953)
T ss_pred CcccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhhhhh
Confidence 37899999999999999999999999999976 7999999999999999999999888876654443
No 16
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.36 E-value=0.0022 Score=50.86 Aligned_cols=66 Identities=21% Similarity=0.273 Sum_probs=53.1
Q ss_pred EEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeCcEEEEEEEEEEccCCccCHHHHHHHHHHHHH
Q 009555 453 TIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIGDYYSFLFNTKIYEGSSVYAGSIANKLIEVMD 519 (532)
Q Consensus 453 ~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg~~vi~tI~aKV~eGs~v~ae~IkqaL~eaL~ 519 (532)
.|.|.+.+++|+|.+|+.+|.+++++|.++.+.+.++.+..+|.+.-.+|...+. +..+.|.+.|.
T Consensus 2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~~~~-~~~~~i~~~l~ 67 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDP-ERQEALRAALG 67 (70)
T ss_pred EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCcCCH-HHHHHHHHHHH
Confidence 4788999999999999999999999999999998888888899988766665433 33334555543
No 17
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.23 E-value=0.0026 Score=52.05 Aligned_cols=66 Identities=18% Similarity=0.202 Sum_probs=53.7
Q ss_pred EEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeCcEEEEEEEEEEccCCccCHHHHHHHHHHHHH
Q 009555 453 TIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIGDYYSFLFNTKIYEGSSVYAGSIANKLIEVMD 519 (532)
Q Consensus 453 ~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg~~vi~tI~aKV~eGs~v~ae~IkqaL~eaL~ 519 (532)
.|.|.+++++|+|.+|..+|.++|+.|+++.+.+.++..+.+|++.-.++..++. +..++|.+.|.
T Consensus 3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~~~-~~~~~l~~~l~ 68 (72)
T cd04926 3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPVDP-KTIEAVRQEIG 68 (72)
T ss_pred EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcCCH-HHHHHHHHHhc
Confidence 5677899999999999999999999999999988888888888887555665544 45556776665
No 18
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.22 E-value=0.0028 Score=52.54 Aligned_cols=65 Identities=15% Similarity=0.137 Sum_probs=54.5
Q ss_pred EEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEe-eCcEEEEEEEEEEccCCccCHHHHHHHHHHHHH
Q 009555 453 TIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGH-IGDYYSFLFNTKIYEGSSVYAGSIANKLIEVMD 519 (532)
Q Consensus 453 ~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~-vg~~vi~tI~aKV~eGs~v~ae~IkqaL~eaL~ 519 (532)
.|-|.|+.++|++.++..+|..+||+|+.|.+.+ .+|+++-+|.+.-. ..-...++.++|+++++
T Consensus 3 eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~--~~~~~~~~~~~~~~~~~ 68 (68)
T cd04928 3 EITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGW--KRGETAALGHALQKEID 68 (68)
T ss_pred EEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecC--CccchHHHHHHHHHhhC
Confidence 4677899999999999999999999999999864 46888888888743 44467899999988763
No 19
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=96.92 E-value=0.012 Score=46.11 Aligned_cols=66 Identities=18% Similarity=0.270 Sum_probs=51.3
Q ss_pred EEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeCcEEEEEEEEEEccCCccCHHHHHHHHHHHHH
Q 009555 453 TIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIGDYYSFLFNTKIYEGSSVYAGSIANKLIEVMD 519 (532)
Q Consensus 453 ~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg~~vi~tI~aKV~eGs~v~ae~IkqaL~eaL~ 519 (532)
.|.|.|..++|+|.+|+.+|.+.++.|.++.+.+.++.....|++.-.++... .++-.+.|.+.|.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~l~~~l~ 67 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPL-DPERIARLEEALE 67 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCCcC-CHHHHHHHHHHHH
Confidence 47789999999999999999999999999999887777777888876555543 3344445555553
No 20
>PRK05007 PII uridylyl-transferase; Provisional
Probab=96.81 E-value=0.0061 Score=71.49 Aligned_cols=71 Identities=18% Similarity=0.283 Sum_probs=60.4
Q ss_pred CCeEEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeCcEEEEEEEEEEccCCccC---HHHHHHHHHHHHH
Q 009555 449 DDEVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIGDYYSFLFNTKIYEGSSVY---AGSIANKLIEVMD 519 (532)
Q Consensus 449 g~dV~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg~~vi~tI~aKV~eGs~v~---ae~IkqaL~eaL~ 519 (532)
+.--.|+|.|.+|+|+|.+|.++|.++||+|..|.|++.|+++.-+|.+.-.+|..++ .+.|+++|.++++
T Consensus 806 ~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~~g~~l~~~~~~~l~~~L~~~l~ 879 (884)
T PRK05007 806 DRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILATADRRALNEELQQELRQRLTEALN 879 (884)
T ss_pred CCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcCCCCcCCHHHHHHHHHHHHHHHh
Confidence 3457899999999999999999999999999999999999999999999877777776 3455566666554
No 21
>PLN03217 transcription factor ATBS1; Provisional
Probab=96.73 E-value=0.0035 Score=54.30 Aligned_cols=50 Identities=30% Similarity=0.467 Sum_probs=42.3
Q ss_pred HHHHHHHHHhhccCCCC------CCCCccchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009555 346 EQLNGKFKALKDLVPNP------TKNDRASVVGDAIEYIKELLRTVNELKLLVEKK 395 (532)
Q Consensus 346 ~klnekf~~LrsLvP~~------~K~DKaSIL~dAI~YIk~Lq~~v~~L~~~~e~~ 395 (532)
+.|++....|+.|+|.. .|..-+-||.|+..||+.|.++|..|.+++.++
T Consensus 20 dqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~L 75 (93)
T PLN03217 20 DQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSEL 75 (93)
T ss_pred HHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999964 233444589999999999999999999887554
No 22
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=96.73 E-value=0.017 Score=47.78 Aligned_cols=68 Identities=15% Similarity=0.218 Sum_probs=54.8
Q ss_pred eEEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeCcEEEEEEEEEEccCCccCHHHHHHHHHHHHHHh
Q 009555 451 EVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIGDYYSFLFNTKIYEGSSVYAGSIANKLIEVMDKQ 521 (532)
Q Consensus 451 dV~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg~~vi~tI~aKV~eGs~v~ae~IkqaL~eaL~~~ 521 (532)
.+.|.+.+++|+|++..|.++|.+.|.+|+.+..+..++++...+.+.+. .-+.++|..+|.++..+.
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~---~~~~~~l~~~L~~l~~~~ 69 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP---EDSLERLESALEELAEEL 69 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES---HHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC---cccHHHHHHHHHHHHHHC
Confidence 47899999999999999999999999999999999999999988888875 225677777777665543
No 23
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=96.69 E-value=0.00085 Score=69.47 Aligned_cols=57 Identities=26% Similarity=0.458 Sum_probs=49.9
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHhhccCCCC--CCCCccchHHHHHHHHHHHHHHHHHH
Q 009555 332 GKPTKHFATERQRREQLNGKFKALKDLVPNP--TKNDRASVVGDAIEYIKELLRTVNEL 388 (532)
Q Consensus 332 s~~~~H~~aER~RR~klnekf~~LrsLvP~~--~K~DKaSIL~dAI~YIk~Lq~~v~~L 388 (532)
-+++.-+.-||+|=.-||.-|..||+|||.- .|.+||.||..+.+||.+|+.+.-+|
T Consensus 59 mRReIANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~l 117 (373)
T KOG0561|consen 59 MRREIANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTEL 117 (373)
T ss_pred HHHHhhcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhccccc
Confidence 3567777889999999999999999999964 79999999999999999998876544
No 24
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=96.57 E-value=0.0037 Score=63.45 Aligned_cols=61 Identities=25% Similarity=0.388 Sum_probs=50.6
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHhhcc-CCCC-CCCCccchHHHHHHHHHHHHHHHHHHHHH
Q 009555 331 AGKPTKHFATERQRREQLNGKFKALKDL-VPNP-TKNDRASVVGDAIEYIKELLRTVNELKLL 391 (532)
Q Consensus 331 ~s~~~~H~~aER~RR~klnekf~~LrsL-vP~~-~K~DKaSIL~dAI~YIk~Lq~~v~~L~~~ 391 (532)
.-++..-.++||+|=+|+|+-|.+|+.- .++. .+.-|.-||-.||+||..||.-++++.+.
T Consensus 116 vDRRKAATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~ 178 (284)
T KOG3960|consen 116 VDRRKAATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQA 178 (284)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3456677789999999999999999754 4555 56789999999999999999988887754
No 25
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=96.54 E-value=0.0022 Score=63.65 Aligned_cols=60 Identities=25% Similarity=0.381 Sum_probs=51.8
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHhhccCCC----CCCCCccchHHHHHHHHHHHHHHHHHHHH
Q 009555 331 AGKPTKHFATERQRREQLNGKFKALKDLVPN----PTKNDRASVVGDAIEYIKELLRTVNELKL 390 (532)
Q Consensus 331 ~s~~~~H~~aER~RR~klnekf~~LrsLvP~----~~K~DKaSIL~dAI~YIk~Lq~~v~~L~~ 390 (532)
...+..++.+||+|=+.+|..|..||.+||. .+|..|..+|..||.||+.|+.-++.-+.
T Consensus 107 ~~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~ 170 (228)
T KOG4029|consen 107 SAQRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEA 170 (228)
T ss_pred hhhhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhccccc
Confidence 3466778888999999999999999999994 46889999999999999999987766553
No 26
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=96.51 E-value=0.033 Score=46.18 Aligned_cols=66 Identities=9% Similarity=0.066 Sum_probs=55.5
Q ss_pred EEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeCcEEEEEEEEEEccCCccCHHHHHHHHHHHHHH
Q 009555 452 VTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIGDYYSFLFNTKIYEGSSVYAGSIANKLIEVMDK 520 (532)
Q Consensus 452 V~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg~~vi~tI~aKV~eGs~v~ae~IkqaL~eaL~~ 520 (532)
+.|.+.|++++|+...|.++|.+.|..|+.++....++.+...+.+.+. ..+.+++.+.|..+..+
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~---~~~~~~l~~~l~~~~~~ 67 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS---WDAIAKLEAALPGLARR 67 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec---cccHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999988777776654 23678888888775544
No 27
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=96.30 E-value=0.018 Score=44.48 Aligned_cols=61 Identities=10% Similarity=0.164 Sum_probs=45.6
Q ss_pred EEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeCc--EEEEEEEEEEccCCccCHHHHHHHHHHH
Q 009555 453 TIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIGD--YYSFLFNTKIYEGSSVYAGSIANKLIEV 517 (532)
Q Consensus 453 ~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg~--~vi~tI~aKV~eGs~v~ae~IkqaL~ea 517 (532)
.|.|.|++++|.|.+|+++|.++|+.|.++.....++ ...+.+... .....+.+.++|+++
T Consensus 2 ~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~ 64 (66)
T PF01842_consen 2 RVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVV----DEEDLEKLLEELEAL 64 (66)
T ss_dssp EEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEE----EGHGHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEEC----CCCCHHHHHHHHHcc
Confidence 5788999999999999999999999999999988876 332222222 122456777777665
No 28
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=96.23 E-value=0.03 Score=65.98 Aligned_cols=80 Identities=14% Similarity=0.225 Sum_probs=64.1
Q ss_pred ceEEEEEe--CCeEEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeCcEEEEEEEEEEccCCccCH----HHHHHHH
Q 009555 441 TEVDVRII--DDEVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIGDYYSFLFNTKIYEGSSVYA----GSIANKL 514 (532)
Q Consensus 441 peVeVrii--g~dV~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg~~vi~tI~aKV~eGs~v~a----e~IkqaL 514 (532)
+.|.+.-. ++...|.|.+.+++|+|.+|..+|..+||+|+.|.|++.|+++.-+|.+.-.+|..++. +.|+++|
T Consensus 802 ~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L 881 (895)
T PRK00275 802 TQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAI 881 (895)
T ss_pred CEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHH
Confidence 44544432 34678999999999999999999999999999999999999999999998767766533 4566666
Q ss_pred HHHHHH
Q 009555 515 IEVMDK 520 (532)
Q Consensus 515 ~eaL~~ 520 (532)
.+++..
T Consensus 882 ~~~L~~ 887 (895)
T PRK00275 882 CEQLDA 887 (895)
T ss_pred HHHHhc
Confidence 666643
No 29
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=96.15 E-value=0.067 Score=43.67 Aligned_cols=66 Identities=9% Similarity=0.163 Sum_probs=54.3
Q ss_pred EEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeC------cEEEEEEEEEEccCCccCHHHHHHHHHHHHHHh
Q 009555 454 IKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIG------DYYSFLFNTKIYEGSSVYAGSIANKLIEVMDKQ 521 (532)
Q Consensus 454 IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg------~~vi~tI~aKV~eGs~v~ae~IkqaL~eaL~~~ 521 (532)
|.|.|.+++|++.+|.++|.+.|++|...+..+.+ +++...+.+.+.+ .++..++.+.|..+-++.
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~--~~~~~~l~~~l~~l~~~~ 73 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPA--GTDLDALREELEELCDDL 73 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCC--CCCHHHHHHHHHHHHHHh
Confidence 67899999999999999999999999999998776 6666666666642 457889998888876653
No 30
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=96.15 E-value=0.026 Score=66.12 Aligned_cols=69 Identities=20% Similarity=0.222 Sum_probs=58.3
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeCcEEEEEEEEEEccCCccCHHHHHHHHHHHHH
Q 009555 450 DEVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIGDYYSFLFNTKIYEGSSVYAGSIANKLIEVMD 519 (532)
Q Consensus 450 ~dV~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg~~vi~tI~aKV~eGs~v~ae~IkqaL~eaL~ 519 (532)
.-..|+|.+.+|+|+|..|.++|.++|++|..|.|++.|+++.-+|.+.-.+|..++.++. ++|+++|.
T Consensus 782 ~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~~g~~l~~~~~-~~l~~~L~ 850 (854)
T PRK01759 782 EQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQGQALDEEER-KALKSRLL 850 (854)
T ss_pred CeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECCCCCcCChHHH-HHHHHHHH
Confidence 4578999999999999999999999999999999999999999999998777777754333 55555544
No 31
>PRK04374 PII uridylyl-transferase; Provisional
Probab=96.09 E-value=0.043 Score=64.54 Aligned_cols=78 Identities=17% Similarity=0.166 Sum_probs=61.6
Q ss_pred ceEEEEEe--CCeEEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeCcEEEEEEEEEEccCCccCH---HHHHHHHH
Q 009555 441 TEVDVRII--DDEVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIGDYYSFLFNTKIYEGSSVYA---GSIANKLI 515 (532)
Q Consensus 441 peVeVrii--g~dV~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg~~vi~tI~aKV~eGs~v~a---e~IkqaL~ 515 (532)
+.|.+.-. ++-..|.|.+.+++|+|.+|..+|.++|++|+.|.|++.|+++.-+|.+.-.+|..++. +.|+++|.
T Consensus 784 ~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~g~~~~~~~~~~l~~~L~ 863 (869)
T PRK04374 784 PRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDEHDRPLSESARQALRDALC 863 (869)
T ss_pred CeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcCChHHHHHHHHHHH
Confidence 45555432 34688999999999999999999999999999999999999999999998666665543 34555554
Q ss_pred HHH
Q 009555 516 EVM 518 (532)
Q Consensus 516 eaL 518 (532)
+++
T Consensus 864 ~~l 866 (869)
T PRK04374 864 ACL 866 (869)
T ss_pred HHh
Confidence 444
No 32
>PRK00194 hypothetical protein; Validated
Probab=96.04 E-value=0.043 Score=46.18 Aligned_cols=71 Identities=18% Similarity=0.290 Sum_probs=57.3
Q ss_pred eEEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeCcEEEEEEEEEEccCCccCHHHHHHHHHHHHHHhh
Q 009555 451 EVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIGDYYSFLFNTKIYEGSSVYAGSIANKLIEVMDKQY 522 (532)
Q Consensus 451 dV~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg~~vi~tI~aKV~eGs~v~ae~IkqaL~eaL~~~~ 522 (532)
.+.|.|.|++++|++..|.++|-+.|++|+..+..+.++.+...+.+.+. +...+.+++.+.|.++-....
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~l~~l~~~~~ 73 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDIS-ESKKDFAELKEELEELGKELG 73 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEec-CCCCCHHHHHHHHHHHHHHcC
Confidence 46799999999999999999999999999999988888877766666654 224567888888888665543
No 33
>PRK03381 PII uridylyl-transferase; Provisional
Probab=95.90 E-value=0.062 Score=62.41 Aligned_cols=80 Identities=16% Similarity=0.108 Sum_probs=66.8
Q ss_pred ceEEEEEe-CCeEEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeCcEEEEEEEEEEccCCccCHHHHHHHHHHHHH
Q 009555 441 TEVDVRII-DDEVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIGDYYSFLFNTKIYEGSSVYAGSIANKLIEVMD 519 (532)
Q Consensus 441 peVeVrii-g~dV~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg~~vi~tI~aKV~eGs~v~ae~IkqaL~eaL~ 519 (532)
+.|.++.. .+.+.|.|+|.+|+|++.+|..+|..+|++|+.|.+.+.+|.++.+|.+.-.+|.....+.|++.|.+++.
T Consensus 588 ~~v~~~~~~~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~~~~~~~l~~~L~~~L~ 667 (774)
T PRK03381 588 VHVEIAPADPHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPPDAALLRQDLRRALD 667 (774)
T ss_pred CEEEEeeCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcchHHHHHHHHHHHHc
Confidence 44555322 46788999999999999999999999999999999998889999999988666665566888999988877
Q ss_pred H
Q 009555 520 K 520 (532)
Q Consensus 520 ~ 520 (532)
.
T Consensus 668 ~ 668 (774)
T PRK03381 668 G 668 (774)
T ss_pred C
Confidence 6
No 34
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.90 E-value=0.071 Score=43.69 Aligned_cols=65 Identities=12% Similarity=0.092 Sum_probs=55.2
Q ss_pred EEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeCcEEEEEEEEEEccCCccCHHHHHHHHHHHHHH
Q 009555 454 IKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIGDYYSFLFNTKIYEGSSVYAGSIANKLIEVMDK 520 (532)
Q Consensus 454 IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg~~vi~tI~aKV~eGs~v~ae~IkqaL~eaL~~ 520 (532)
|.|.+.+|+|++..|.++|-++|++|...+.++.++.+...+.+.+.++ ++.+++.+.|..+...
T Consensus 2 vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~--~~~~~l~~~l~~l~~~ 66 (75)
T cd04870 2 ITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDS--ADSEALLKDLLFKAHE 66 (75)
T ss_pred EEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCC--CCHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999998888888777777776544 4678888888877655
No 35
>PRK05092 PII uridylyl-transferase; Provisional
Probab=95.88 E-value=0.054 Score=64.03 Aligned_cols=83 Identities=17% Similarity=0.195 Sum_probs=66.5
Q ss_pred ceEEEEEe--CCeEEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeCcEEEEEEEEEEccCCccC----HHHHHHHH
Q 009555 441 TEVDVRII--DDEVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIGDYYSFLFNTKIYEGSSVY----AGSIANKL 514 (532)
Q Consensus 441 peVeVrii--g~dV~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg~~vi~tI~aKV~eGs~v~----ae~IkqaL 514 (532)
+.|.+.-. ++...|.|.|.+++|+|.+|..+|.++|++|..|.+.+.++++.-+|.+.-.+|..+. .+.|.++|
T Consensus 831 ~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L 910 (931)
T PRK05092 831 PRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRRAL 910 (931)
T ss_pred CEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHH
Confidence 44555432 3457899999999999999999999999999999999999999999999876676552 35677788
Q ss_pred HHHHHHhhh
Q 009555 515 IEVMDKQYA 523 (532)
Q Consensus 515 ~eaL~~~~~ 523 (532)
.+++.....
T Consensus 911 ~~~L~~~~~ 919 (931)
T PRK05092 911 LAALAEGEA 919 (931)
T ss_pred HHHhcCccc
Confidence 777755443
No 36
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=95.88 E-value=0.12 Score=42.51 Aligned_cols=50 Identities=8% Similarity=0.163 Sum_probs=43.1
Q ss_pred eEEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEee--CcEEEEEEEEEEc
Q 009555 451 EVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHI--GDYYSFLFNTKIY 500 (532)
Q Consensus 451 dV~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~v--g~~vi~tI~aKV~ 500 (532)
.+.|+|.+.+++|+|.+|+.++.+.++.|.++++... ++.+...|.++|.
T Consensus 6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~ 57 (80)
T PF13291_consen 6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVK 57 (80)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEES
T ss_pred EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEEC
Confidence 4678999999999999999999999999999999884 6788889999986
No 37
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.85 E-value=0.054 Score=45.64 Aligned_cols=69 Identities=17% Similarity=0.307 Sum_probs=56.9
Q ss_pred EEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeCcEEEEEEEEEEccCCccCHHHHHHHHHHHHHHh
Q 009555 452 VTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIGDYYSFLFNTKIYEGSSVYAGSIANKLIEVMDKQ 521 (532)
Q Consensus 452 V~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg~~vi~tI~aKV~eGs~v~ae~IkqaL~eaL~~~ 521 (532)
+.|.+.|++++|++..|.++|-+.|++|..++..+.++.+...+.+.+. +...+.+++.+.|.++....
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~-~~~~~~~~L~~~l~~l~~~~ 70 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS-ESNLDFAELQEELEELGKEL 70 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC-CCCCCHHHHHHHHHHHHHHc
Confidence 5689999999999999999999999999999988888877766777654 22456788988888876553
No 38
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.75 E-value=0.099 Score=42.49 Aligned_cols=65 Identities=11% Similarity=0.042 Sum_probs=48.9
Q ss_pred EEEEecCCCChHHHHHHHHHHcCCcEEEEEEEee--CcEEEEEEEEEEccCC-ccCHHHHHHHHHHHHHH
Q 009555 454 IKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHI--GDYYSFLFNTKIYEGS-SVYAGSIANKLIEVMDK 520 (532)
Q Consensus 454 IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~v--g~~vi~tI~aKV~eGs-~v~ae~IkqaL~eaL~~ 520 (532)
|.|.|++++|++.+|.++|-+.|+.|+..+..+. ++. +.+.+++.--. .++.+++.++|..+...
T Consensus 2 i~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~--f~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 69 (74)
T cd04875 2 LTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGR--FFMRVEFELEGFDLSREALEAAFAPVAAE 69 (74)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCe--EEEEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999988753 334 34444443222 25688888888876654
No 39
>PRK03381 PII uridylyl-transferase; Provisional
Probab=95.73 E-value=0.063 Score=62.37 Aligned_cols=67 Identities=12% Similarity=0.164 Sum_probs=58.0
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeCcEEEEEEEEEEccCCccCHHHHHHHHHHHH
Q 009555 450 DEVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIGDYYSFLFNTKIYEGSSVYAGSIANKLIEVM 518 (532)
Q Consensus 450 ~dV~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg~~vi~tI~aKV~eGs~v~ae~IkqaL~eaL 518 (532)
+-..|.|.|.+++|+|.+|..+|..+|++|+.|.|++.|+++.-+|.+.-.+|..++.+ .+.|+++|
T Consensus 706 ~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~g~~~~~~--~~~l~~~L 772 (774)
T PRK03381 706 DATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAAGGPLADA--RAAVEQAV 772 (774)
T ss_pred CeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCCCCcCchH--HHHHHHHh
Confidence 35889999999999999999999999999999999999999999999987777777533 55666654
No 40
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=95.46 E-value=0.084 Score=61.73 Aligned_cols=70 Identities=19% Similarity=0.222 Sum_probs=59.0
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeCcEEEEEEEEEEccCCccCHHHHHHHHHHHHHH
Q 009555 450 DEVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIGDYYSFLFNTKIYEGSSVYAGSIANKLIEVMDK 520 (532)
Q Consensus 450 ~dV~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg~~vi~tI~aKV~eGs~v~ae~IkqaL~eaL~~ 520 (532)
+-..|.|.|.+|+|+|.+|.++|.++|++|.++.+++.++++.-+|.+....|..++. +..+.|.++|..
T Consensus 778 ~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~~~-~~~~~l~~~L~~ 847 (850)
T TIGR01693 778 KATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLTD-EEEQRLLEVLAA 847 (850)
T ss_pred CeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCCCCCCH-HHHHHHHHHHHH
Confidence 3588999999999999999999999999999999999999999999998777777654 444555555543
No 41
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=95.32 E-value=0.097 Score=61.20 Aligned_cols=72 Identities=15% Similarity=0.107 Sum_probs=61.2
Q ss_pred CCeEEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEE-eeCcEEEEEEEEEEccCCccCH----HHHHHHHHHHHHH
Q 009555 449 DDEVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGG-HIGDYYSFLFNTKIYEGSSVYA----GSIANKLIEVMDK 520 (532)
Q Consensus 449 g~dV~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS-~vg~~vi~tI~aKV~eGs~v~a----e~IkqaL~eaL~~ 520 (532)
.+...|.|.+.+++|+|.+|..+|..+||+|+.|.|. +.+++++-+|.++-.+|..++. +.|.+.|.+++..
T Consensus 666 ~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i~~~L~~~L~~ 742 (850)
T TIGR01693 666 SGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELLQGLVDVLAG 742 (850)
T ss_pred CCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHHHHHHHHHHcC
Confidence 4567899999999999999999999999999999998 7789999999999877776643 3477777777765
No 42
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=0.083 Score=61.40 Aligned_cols=81 Identities=15% Similarity=0.238 Sum_probs=67.0
Q ss_pred ceEEEE--EeCCeEEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeCcEEEEEEEEEEccCCccCHHHHHHHHHHHH
Q 009555 441 TEVDVR--IIDDEVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIGDYYSFLFNTKIYEGSSVYAGSIANKLIEVM 518 (532)
Q Consensus 441 peVeVr--iig~dV~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg~~vi~tI~aKV~eGs~v~ae~IkqaL~eaL 518 (532)
|.|.+. ...+.-+|+|.+.+|+|+|..|..+|..++|+|++|.|+++|.++.-+|.+..-+|..+ ..++.+.|.+.+
T Consensus 779 p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~~~~~l-~~~~~q~l~~~l 857 (867)
T COG2844 779 PRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDADGQAL-NAELRQSLLQRL 857 (867)
T ss_pred CceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccccccceeEEEEeccccccC-CHHHHHHHHHHH
Confidence 566654 23456789999999999999999999999999999999999999999999998888887 456667777666
Q ss_pred HHhh
Q 009555 519 DKQY 522 (532)
Q Consensus 519 ~~~~ 522 (532)
-...
T Consensus 858 l~al 861 (867)
T COG2844 858 LEAL 861 (867)
T ss_pred HHHh
Confidence 5543
No 43
>PRK05007 PII uridylyl-transferase; Provisional
Probab=95.09 E-value=0.14 Score=60.44 Aligned_cols=82 Identities=15% Similarity=0.028 Sum_probs=63.8
Q ss_pred CceEEEEE--eCCeEEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeC-cEEEEEEEEEEccCCccCH---HHHHHH
Q 009555 440 DTEVDVRI--IDDEVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIG-DYYSFLFNTKIYEGSSVYA---GSIANK 513 (532)
Q Consensus 440 ~peVeVri--ig~dV~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg-~~vi~tI~aKV~eGs~v~a---e~Ikqa 513 (532)
.+.|.++- ..+...|.|+|.+++|+|..|..+|..+||+|+.|.|.+.+ |+++-+|.+.-.+|..+.. +.|.+.
T Consensus 688 ~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~~~~~~~I~~~ 767 (884)
T PRK05007 688 KPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLSQDRHQVIRKA 767 (884)
T ss_pred CCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCCHHHHHHHHHH
Confidence 34555543 34578899999999999999999999999999999987665 5998899998777776643 336777
Q ss_pred HHHHHHHh
Q 009555 514 LIEVMDKQ 521 (532)
Q Consensus 514 L~eaL~~~ 521 (532)
|.+++...
T Consensus 768 L~~aL~~~ 775 (884)
T PRK05007 768 LEQALTQS 775 (884)
T ss_pred HHHHHcCC
Confidence 77777543
No 44
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=94.99 E-value=0.15 Score=59.92 Aligned_cols=81 Identities=14% Similarity=0.126 Sum_probs=63.6
Q ss_pred CceEEEEE--eCCeEEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEe-eCcEEEEEEEEEEccCCccCHH---HHHHH
Q 009555 440 DTEVDVRI--IDDEVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGH-IGDYYSFLFNTKIYEGSSVYAG---SIANK 513 (532)
Q Consensus 440 ~peVeVri--ig~dV~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~-vg~~vi~tI~aKV~eGs~v~ae---~Ikqa 513 (532)
.+.|.++- ..+...|.|.|.+++|+|.+|..+|..+||+|+.|.|.+ .+|+++-+|.+.-.+|..+..+ .|.++
T Consensus 664 ~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~~~~~~~l~~~ 743 (854)
T PRK01759 664 DLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLEFDRRRQLEQA 743 (854)
T ss_pred CCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCCHHHHHHHHHH
Confidence 45555543 345678999999999999999999999999999999876 7899999999986677766543 45566
Q ss_pred HHHHHHH
Q 009555 514 LIEVMDK 520 (532)
Q Consensus 514 L~eaL~~ 520 (532)
|.+++..
T Consensus 744 L~~aL~~ 750 (854)
T PRK01759 744 LTKALNT 750 (854)
T ss_pred HHHHHcC
Confidence 6666653
No 45
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.95 E-value=0.14 Score=41.04 Aligned_cols=48 Identities=15% Similarity=0.036 Sum_probs=41.0
Q ss_pred EEEEecCCCChHHHHHHHHHHcCCcEEEEEEEee-CcEEEEEEEEEEcc
Q 009555 454 IKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHI-GDYYSFLFNTKIYE 501 (532)
Q Consensus 454 IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~v-g~~vi~tI~aKV~e 501 (532)
|+|.+..++|+|.+|+.+|.+.|..|.+++.... ++.....|.+++.+
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~~ 50 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAPS 50 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcCC
Confidence 6889999999999999999999999999988765 46777777777753
No 46
>PRK03059 PII uridylyl-transferase; Provisional
Probab=94.74 E-value=0.17 Score=59.51 Aligned_cols=66 Identities=17% Similarity=0.272 Sum_probs=53.4
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeCcEEEEEEEEEEccCCcc-C---HHHHHHHHHHHH
Q 009555 450 DEVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIGDYYSFLFNTKIYEGSSV-Y---AGSIANKLIEVM 518 (532)
Q Consensus 450 ~dV~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg~~vi~tI~aKV~eGs~v-~---ae~IkqaL~eaL 518 (532)
+-..|.|.|.+++|+|.+|..+|..+|++|+.|.|++.|+++.-+|.+. +... + .+.|+++|.+++
T Consensus 785 ~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~---~~~~~~~~~~~~l~~~L~~~L 854 (856)
T PRK03059 785 QYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLID---GSGLSDNRLQIQLETELLDAL 854 (856)
T ss_pred CEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEc---CCCCCCHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999999999999999999999984 2222 2 345555555544
No 47
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.54 E-value=0.3 Score=37.76 Aligned_cols=47 Identities=9% Similarity=0.013 Sum_probs=37.6
Q ss_pred EEEEecCCCChHHHHHHHHHHcCCcEEEEEEEee-----CcEEEEEEEEEEc
Q 009555 454 IKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHI-----GDYYSFLFNTKIY 500 (532)
Q Consensus 454 IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~v-----g~~vi~tI~aKV~ 500 (532)
+.|.++.++|.|.+|+++|.+.|++|.++..... .+...+.|.+.+.
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~ 52 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETR 52 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeC
Confidence 3578899999999999999999999998887654 3556666666663
No 48
>PRK05092 PII uridylyl-transferase; Provisional
Probab=94.07 E-value=0.46 Score=56.40 Aligned_cols=81 Identities=6% Similarity=-0.054 Sum_probs=62.1
Q ss_pred CceEEEEEe--CCeEEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEe-eCcEEEEEEEEEEccCCcc----CHHHHHH
Q 009555 440 DTEVDVRII--DDEVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGH-IGDYYSFLFNTKIYEGSSV----YAGSIAN 512 (532)
Q Consensus 440 ~peVeVrii--g~dV~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~-vg~~vi~tI~aKV~eGs~v----~ae~Ikq 512 (532)
.+.|.++.. .+...|.|.|.+++|++..|..+|..+|++|+.|.+.+ .+++++-+|.+.-.+|... ..+.|.+
T Consensus 719 ~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l~~ 798 (931)
T PRK05092 719 PLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLAK 798 (931)
T ss_pred CcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHHHH
Confidence 355555443 35788999999999999999999999999999999876 5788888888876666443 2455666
Q ss_pred HHHHHHHH
Q 009555 513 KLIEVMDK 520 (532)
Q Consensus 513 aL~eaL~~ 520 (532)
.|..++..
T Consensus 799 ~L~~~l~~ 806 (931)
T PRK05092 799 AIEDALSG 806 (931)
T ss_pred HHHHHHcC
Confidence 77666643
No 49
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.98 E-value=0.24 Score=39.62 Aligned_cols=49 Identities=10% Similarity=0.073 Sum_probs=39.5
Q ss_pred EEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEee-CcEEEEEEEEEEc
Q 009555 452 VTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHI-GDYYSFLFNTKIY 500 (532)
Q Consensus 452 V~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~v-g~~vi~tI~aKV~ 500 (532)
+.|.|.+..++|+|.+|+++|.+.+++|...+.... ++.....|.+.+.
T Consensus 1 ~~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~ 50 (76)
T cd04888 1 VTLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTS 50 (76)
T ss_pred CEEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcC
Confidence 357889999999999999999999999999986543 3556666666664
No 50
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=93.80 E-value=0.079 Score=58.41 Aligned_cols=59 Identities=24% Similarity=0.293 Sum_probs=48.8
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHhhccCCCCCC----CCccchHHHHHHHHHHHHHHHHHHH
Q 009555 331 AGKPTKHFATERQRREQLNGKFKALKDLVPNPTK----NDRASVVGDAIEYIKELLRTVNELK 389 (532)
Q Consensus 331 ~s~~~~H~~aER~RR~klnekf~~LrsLvP~~~K----~DKaSIL~dAI~YIk~Lq~~v~~L~ 389 (532)
..++...+++||-|=+.||+-|++|..+.=---| -.|.-||..|+.-|-.|+++|.+-.
T Consensus 524 kERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRERN 586 (632)
T KOG3910|consen 524 KERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRERN 586 (632)
T ss_pred HHHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHcc
Confidence 3477889999999999999999999988642222 3588999999999999999997653
No 51
>PRK03059 PII uridylyl-transferase; Provisional
Probab=93.63 E-value=0.44 Score=56.20 Aligned_cols=79 Identities=13% Similarity=0.112 Sum_probs=59.9
Q ss_pred ceEEEEE--eCCeEEEEEEecCCCChHHHHHHHHHHcCCcEEEEEE-EeeCcEEEEEEEEEEccCCccC----HHHHHHH
Q 009555 441 TEVDVRI--IDDEVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAG-GHIGDYYSFLFNTKIYEGSSVY----AGSIANK 513 (532)
Q Consensus 441 peVeVri--ig~dV~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsi-S~vg~~vi~tI~aKV~eGs~v~----ae~Ikqa 513 (532)
+-|.++. ..+...|.|+|.+++|++..|..+|..+||+|+.|.+ ++.+|+++-+|.+.-.+|. .. .+.|.+.
T Consensus 666 ~~v~~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~-~~~~~~~~~i~~~ 744 (856)
T PRK03059 666 PIVRARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEED-VHYRDIINLVEHE 744 (856)
T ss_pred CeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCC-CChHHHHHHHHHH
Confidence 3344443 3367889999999999999999999999999999998 5668899999998755454 32 4456666
Q ss_pred HHHHHHH
Q 009555 514 LIEVMDK 520 (532)
Q Consensus 514 L~eaL~~ 520 (532)
|.+++..
T Consensus 745 l~~~l~~ 751 (856)
T PRK03059 745 LAERLAE 751 (856)
T ss_pred HHHHHcC
Confidence 6666644
No 52
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.54 E-value=0.35 Score=40.17 Aligned_cols=65 Identities=15% Similarity=0.125 Sum_probs=53.1
Q ss_pred EEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeCcEEEEEEEEEEccC-CccCHHHHHHHHHHH
Q 009555 453 TIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIGDYYSFLFNTKIYEG-SSVYAGSIANKLIEV 517 (532)
Q Consensus 453 ~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg~~vi~tI~aKV~eG-s~v~ae~IkqaL~ea 517 (532)
.|.|.|+++.|+-.++.+++-++||.|+...+++.|-.....|-+.-... ..+.=+-++++|.++
T Consensus 2 vitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~~~rW~lLK~RL~~~ 67 (69)
T cd04894 2 VITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSIKVRWDLLKNRLMSA 67 (69)
T ss_pred EEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCCCcccHHHHHHHHHhc
Confidence 48899999999999999999999999999999998886666666664432 235678888888764
No 53
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=93.20 E-value=0.5 Score=55.95 Aligned_cols=70 Identities=14% Similarity=0.165 Sum_probs=56.3
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHHcCCcEEEEEE-EeeCcEEEEEEEEEEccCCcc-C----HHHHHHHHHHHHH
Q 009555 450 DEVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAG-GHIGDYYSFLFNTKIYEGSSV-Y----AGSIANKLIEVMD 519 (532)
Q Consensus 450 ~dV~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsi-S~vg~~vi~tI~aKV~eGs~v-~----ae~IkqaL~eaL~ 519 (532)
+...|.|.|.+++|++.+|..+|..+||+|+.|.| ++.+|.++-+|.+.-.+|..+ + .+.|.+.|.+++.
T Consensus 703 ~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~~~i~~~L~~~L~ 778 (895)
T PRK00275 703 GGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARIEQIREGLTEALR 778 (895)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHHHHHHHHHHHHHc
Confidence 56889999999999999999999999999999998 556788888999886666653 2 2335666666654
No 54
>PRK04435 hypothetical protein; Provisional
Probab=92.97 E-value=0.55 Score=44.01 Aligned_cols=54 Identities=11% Similarity=0.100 Sum_probs=45.9
Q ss_pred EeCCeEEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEe-eCcEEEEEEEEEEc
Q 009555 447 IIDDEVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGH-IGDYYSFLFNTKIY 500 (532)
Q Consensus 447 iig~dV~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~-vg~~vi~tI~aKV~ 500 (532)
..|..+.|.+.+.+++|+|.+|+++|.+.++.|..++.+. .++....+|.+.+.
T Consensus 65 ~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs 119 (147)
T PRK04435 65 VKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTS 119 (147)
T ss_pred CCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeC
Confidence 4577899999999999999999999999999999998654 35777777777774
No 55
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=92.96 E-value=0.7 Score=34.06 Aligned_cols=47 Identities=11% Similarity=0.135 Sum_probs=38.1
Q ss_pred EEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeC-cEEEEEEEEEEc
Q 009555 454 IKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIG-DYYSFLFNTKIY 500 (532)
Q Consensus 454 IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg-~~vi~tI~aKV~ 500 (532)
|+|.|.+++|.+..|+.+|.+.++++........+ +.....|.+++.
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 48 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVR 48 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEEC
Confidence 46788999999999999999999999999887655 555556666654
No 56
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=92.48 E-value=0.71 Score=32.12 Aligned_cols=35 Identities=17% Similarity=0.221 Sum_probs=30.7
Q ss_pred EEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeC
Q 009555 454 IKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIG 488 (532)
Q Consensus 454 IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg 488 (532)
|.+.|..++|.+.+|+.+|...++.|..+......
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 46788899999999999999999999999876653
No 57
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=92.10 E-value=0.46 Score=38.72 Aligned_cols=45 Identities=13% Similarity=0.123 Sum_probs=37.0
Q ss_pred EEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeCcEEEEEEEEEEc
Q 009555 453 TIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIGDYYSFLFNTKIY 500 (532)
Q Consensus 453 ~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg~~vi~tI~aKV~ 500 (532)
.|+|.|.++.|+|.+|+.++.+.+..+..+++... +. ..|.+++.
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~--i~l~i~v~ 46 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GR--IYLNFPTI 46 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-Ce--EEEEeEec
Confidence 47899999999999999999999999999998664 44 34555554
No 58
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=91.77 E-value=1.2 Score=46.19 Aligned_cols=72 Identities=7% Similarity=-0.005 Sum_probs=54.2
Q ss_pred eEEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeCcEEEEEEEEEEccCCccCHHHHHHHHHHHHHHhh
Q 009555 451 EVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIGDYYSFLFNTKIYEGSSVYAGSIANKLIEVMDKQY 522 (532)
Q Consensus 451 dV~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg~~vi~tI~aKV~eGs~v~ae~IkqaL~eaL~~~~ 522 (532)
.+.|.|.|.+++|+...|.++|-++|++|...+..+..+.-.|++.+.+.--..++.++|+++|.++-+...
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~~~~~L~~~L~~l~~~l~ 78 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGLDEDALRAGFAPIAARFG 78 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence 467899999999999999999999999999999874333223344555532234678999999888766543
No 59
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.69 E-value=0.6 Score=36.60 Aligned_cols=48 Identities=17% Similarity=0.223 Sum_probs=38.5
Q ss_pred EEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEee-C-cEEEEEEEEEEc
Q 009555 453 TIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHI-G-DYYSFLFNTKIY 500 (532)
Q Consensus 453 ~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~v-g-~~vi~tI~aKV~ 500 (532)
+|+|.+.+++|.+.+|+.+|.+.+..+..+..... + +.....|.+.+.
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~ 51 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHET 51 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccC
Confidence 68899999999999999999999999999887654 2 555555655543
No 60
>PRK04374 PII uridylyl-transferase; Provisional
Probab=91.48 E-value=1.5 Score=52.03 Aligned_cols=72 Identities=13% Similarity=0.068 Sum_probs=58.0
Q ss_pred CCeEEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEe-eCcEEEEEEEEEEccCCc-cCHHHHHHHHHHHHHH
Q 009555 449 DDEVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGH-IGDYYSFLFNTKIYEGSS-VYAGSIANKLIEVMDK 520 (532)
Q Consensus 449 g~dV~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~-vg~~vi~tI~aKV~eGs~-v~ae~IkqaL~eaL~~ 520 (532)
.+.+.|.|.|.+++|++.+|..+|..+||+|+.|.+.+ .+|+++-+|.+.-.+|.. -....|.+.|.+++..
T Consensus 688 ~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~i~~~l~~~l~~ 761 (869)
T PRK04374 688 NDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYADGDPQRLAAALRQVLAG 761 (869)
T ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCChHHHHHHHHHHHHHHcC
Confidence 35688999999999999999999999999999999875 678999999987555532 2345577777777755
No 61
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=91.03 E-value=1.7 Score=45.06 Aligned_cols=72 Identities=8% Similarity=-0.040 Sum_probs=57.0
Q ss_pred eEEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEe--eCcEEEEEEEEEEccCCccCHHHHHHHHHHHHHHhhh
Q 009555 451 EVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGH--IGDYYSFLFNTKIYEGSSVYAGSIANKLIEVMDKQYA 523 (532)
Q Consensus 451 dV~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~--vg~~vi~tI~aKV~eGs~v~ae~IkqaL~eaL~~~~~ 523 (532)
.+.|.+.|.+|+|+...|.++|-++|+.|...+.++ .++.+...+.+.+. ....+.+++.++|.++-+....
T Consensus 6 ~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~-~~~~~~~~L~~~L~~l~~~l~l 79 (286)
T PRK06027 6 RYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGD-GLIFNLETLRADFAALAEEFEM 79 (286)
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeC-CCCCCHHHHHHHHHHHHHHhCC
Confidence 477899999999999999999999999999999998 77865545555541 3345678888888877766553
No 62
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=90.98 E-value=1.9 Score=34.97 Aligned_cols=46 Identities=13% Similarity=0.189 Sum_probs=36.5
Q ss_pred EEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeCc-EEEEEEEEEEc
Q 009555 455 KLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIGD-YYSFLFNTKIY 500 (532)
Q Consensus 455 kI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg~-~vi~tI~aKV~ 500 (532)
.+..++++|.|..|+++|.+.|+.+++..+....+ ..-|.|.+.+.
T Consensus 3 ~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~ 49 (75)
T cd04880 3 VFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFE 49 (75)
T ss_pred EEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEE
Confidence 34557899999999999999999999998776643 55566666664
No 63
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=90.59 E-value=2.7 Score=34.63 Aligned_cols=60 Identities=18% Similarity=0.266 Sum_probs=43.8
Q ss_pred EEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeC-cEEEEEEEEEEccCCccCHHHHHHHH
Q 009555 453 TIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIG-DYYSFLFNTKIYEGSSVYAGSIANKL 514 (532)
Q Consensus 453 ~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg-~~vi~tI~aKV~eGs~v~ae~IkqaL 514 (532)
.|.+.-++++|.|.+|+++|.+.|+.+++..+.... +...+.|.+.++ +. .+.+++.+.|
T Consensus 3 sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~-~~-~~~~~~~~~l 63 (80)
T cd04905 3 SIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFE-GH-IEDPNVAEAL 63 (80)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEE-CC-CCCHHHHHHH
Confidence 345566789999999999999999999999877654 455677888765 32 3345555544
No 64
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.44 E-value=2.3 Score=32.81 Aligned_cols=45 Identities=9% Similarity=0.008 Sum_probs=35.4
Q ss_pred EEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEee-CcEEEEEEEE
Q 009555 453 TIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHI-GDYYSFLFNT 497 (532)
Q Consensus 453 ~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~v-g~~vi~tI~a 497 (532)
.|.|.+.+++|.|.+++..|.+.++.|........ ++....+|.+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~ 47 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMEL 47 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEE
Confidence 47789999999999999999999999998887655 3444444333
No 65
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=90.31 E-value=1.6 Score=33.47 Aligned_cols=47 Identities=9% Similarity=0.089 Sum_probs=38.4
Q ss_pred EEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEee--CcEEEEEEEEEE
Q 009555 453 TIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHI--GDYYSFLFNTKI 499 (532)
Q Consensus 453 ~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~v--g~~vi~tI~aKV 499 (532)
.|.+.+.+++|.|.+|+.+|.+.++.+........ ++...+.|.+.+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 50 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEG 50 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEEC
Confidence 46778899999999999999999999999987654 456666666665
No 66
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=90.12 E-value=1.6 Score=45.43 Aligned_cols=72 Identities=10% Similarity=0.008 Sum_probs=53.2
Q ss_pred eEEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEE--eeCcEEEEEEEEEEccCCccCHHHHHHHHHHHHHHhh
Q 009555 451 EVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGG--HIGDYYSFLFNTKIYEGSSVYAGSIANKLIEVMDKQY 522 (532)
Q Consensus 451 dV~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS--~vg~~vi~tI~aKV~eGs~v~ae~IkqaL~eaL~~~~ 522 (532)
.+.|.|.|++++|+...|.+.|-+.|+.|+.++-. ...+.++..+.........++.++++++|.++-..-.
T Consensus 9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~~~~~~~l~~~l~~l~~~l~ 82 (289)
T PRK13010 9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAEAASVDTFRQEFQPVAEKFD 82 (289)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHhC
Confidence 36789999999999999999999999999999875 3334443333333221235678999999988766644
No 67
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=90.05 E-value=0.27 Score=54.94 Aligned_cols=38 Identities=32% Similarity=0.657 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHhhccCCCC----CCCCccchHHHHHHHHH
Q 009555 342 RQRREQLNGKFKALKDLVPNP----TKNDRASVVGDAIEYIK 379 (532)
Q Consensus 342 R~RR~klnekf~~LrsLvP~~----~K~DKaSIL~dAI~YIk 379 (532)
+|-|+|||..+..|.+|||.. +|.||.|||.-++.|++
T Consensus 34 KRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 34 KRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLR 75 (712)
T ss_pred hhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHH
Confidence 455699999999999999975 79999999999999984
No 68
>PRK08577 hypothetical protein; Provisional
Probab=89.58 E-value=3.2 Score=38.02 Aligned_cols=65 Identities=15% Similarity=0.232 Sum_probs=48.5
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEee--CcEEEEEEEEEEccCCccCHHHHHHHHH
Q 009555 450 DEVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHI--GDYYSFLFNTKIYEGSSVYAGSIANKLI 515 (532)
Q Consensus 450 ~dV~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~v--g~~vi~tI~aKV~eGs~v~ae~IkqaL~ 515 (532)
+.+.|.|.+.+++|+|..|+++|.+.+.++.+.+.... ++.....+.+.+.+.. ...+++.++|.
T Consensus 55 ~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~~-~~l~~l~~~L~ 121 (136)
T PRK08577 55 KLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKSD-IDLEELEEELK 121 (136)
T ss_pred cEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCch-hhHHHHHHHHH
Confidence 36889999999999999999999999999998887664 3555566777775431 23455555554
No 69
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=89.58 E-value=2.1 Score=32.68 Aligned_cols=58 Identities=10% Similarity=0.161 Sum_probs=42.8
Q ss_pred EEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeC--cEEEEEEEEEEccCCccCHHHHHHHHHH
Q 009555 454 IKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIG--DYYSFLFNTKIYEGSSVYAGSIANKLIE 516 (532)
Q Consensus 454 IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg--~~vi~tI~aKV~eGs~v~ae~IkqaL~e 516 (532)
+.|.+.+++|.+.+|+++|.+.++.|.+..+.... +.....|.+ . +. ..+++.++|.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v--~-~~--~~~~l~~~l~~ 61 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV--D-SP--VPEEVLEELKA 61 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc--C-CC--CCHHHHHHHHc
Confidence 56788999999999999999999999999887654 565555555 2 22 24555555543
No 70
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=89.51 E-value=2.8 Score=43.37 Aligned_cols=68 Identities=4% Similarity=0.018 Sum_probs=52.6
Q ss_pred EEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeC--cEEEEEEEEEEccCCccCHHHHHHHHHHHHHHh
Q 009555 453 TIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIG--DYYSFLFNTKIYEGSSVYAGSIANKLIEVMDKQ 521 (532)
Q Consensus 453 ~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg--~~vi~tI~aKV~eGs~v~ae~IkqaL~eaL~~~ 521 (532)
.|.+.|++++|+...|...|-+.|+.|+.++-.... +++...+.+.+. +..++.++++++|.+++.+.
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~-~~~~~~~~l~~~l~~~~~~~ 71 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLE-GFRLEESSLLAAFKSALAEK 71 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC-CCCCCHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999977643 665544555543 33467899999998844433
No 71
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.88 E-value=2.1 Score=32.81 Aligned_cols=58 Identities=12% Similarity=0.252 Sum_probs=40.5
Q ss_pred EEEEecCCCChHHHHHHHHHHcCCcEEEEEEEee--CcEEEEEEEEEEccCCccCHHHHHHHHHH
Q 009555 454 IKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHI--GDYYSFLFNTKIYEGSSVYAGSIANKLIE 516 (532)
Q Consensus 454 IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~v--g~~vi~tI~aKV~eGs~v~ae~IkqaL~e 516 (532)
|.+.+.+++|.+.+|+++|.+.++.|..+..... ++.....| .+.+- ...++.++|++
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i--~v~~~---~~~~~i~~l~~ 61 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVI--EVDQP---IDEEVIEEIKK 61 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEE--EeCCC---CCHHHHHHHHc
Confidence 5778899999999999999999999998886652 34444343 44322 34455555543
No 72
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.30 E-value=3.2 Score=32.80 Aligned_cols=35 Identities=9% Similarity=0.142 Sum_probs=30.6
Q ss_pred EEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEee
Q 009555 453 TIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHI 487 (532)
Q Consensus 453 ~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~v 487 (532)
.+.+.+++++|.|..|++.|.+.|+.|..+.....
T Consensus 3 ~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~ 37 (69)
T cd04909 3 DLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEI 37 (69)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEe
Confidence 46778899999999999999999999998876554
No 73
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.22 E-value=5.5 Score=31.44 Aligned_cols=47 Identities=11% Similarity=0.109 Sum_probs=36.7
Q ss_pred EEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEee--CcEEEEEEEEEE
Q 009555 453 TIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHI--GDYYSFLFNTKI 499 (532)
Q Consensus 453 ~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~v--g~~vi~tI~aKV 499 (532)
.|.+..++++|.|..|+++|.+.|+.|.+...... ++...+.|++..
T Consensus 3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~ 51 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQT 51 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEec
Confidence 56778899999999999999999999998865433 355556666654
No 74
>PRK07334 threonine dehydratase; Provisional
Probab=88.07 E-value=2.1 Score=45.99 Aligned_cols=50 Identities=10% Similarity=0.104 Sum_probs=42.9
Q ss_pred eEEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEee-----CcEEEEEEEEEEc
Q 009555 451 EVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHI-----GDYYSFLFNTKIY 500 (532)
Q Consensus 451 dV~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~v-----g~~vi~tI~aKV~ 500 (532)
.+.|+|.+.+|+|+|.+|+++|.+.++.|.+++.... ++.....|.++|.
T Consensus 326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~ 380 (403)
T PRK07334 326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETR 380 (403)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeC
Confidence 4889999999999999999999999999999998654 5676667777775
No 75
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.50 E-value=3.7 Score=32.96 Aligned_cols=46 Identities=11% Similarity=0.081 Sum_probs=34.4
Q ss_pred EEEEecCCCChHHHHHHHHHHcCCcEEEEEEEee---CcEEEEEEEEEE
Q 009555 454 IKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHI---GDYYSFLFNTKI 499 (532)
Q Consensus 454 IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~v---g~~vi~tI~aKV 499 (532)
+.+.-+.++|.|.+|+.+|.+.|..|+++..... .+.-...+++.+
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~ 50 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTP 50 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEE
Confidence 4566689999999999999999999999976654 233334445444
No 76
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.22 E-value=2.6 Score=32.38 Aligned_cols=44 Identities=14% Similarity=0.081 Sum_probs=32.6
Q ss_pred EEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeC--cEEEEEEEE
Q 009555 454 IKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIG--DYYSFLFNT 497 (532)
Q Consensus 454 IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg--~~vi~tI~a 497 (532)
|.|.-+.++|.|.+++.+|.+.|+.|.++...... +...+.|++
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~v 47 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRT 47 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEe
Confidence 55667899999999999999999999877654443 444433333
No 77
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=86.69 E-value=5.5 Score=31.57 Aligned_cols=45 Identities=11% Similarity=0.237 Sum_probs=36.2
Q ss_pred EEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeCcEEEEEEEEEE
Q 009555 453 TIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIGDYYSFLFNTKI 499 (532)
Q Consensus 453 ~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg~~vi~tI~aKV 499 (532)
.|.|..++++|.|.+|+++|.+.|+.|.+.-+...++. ..++..+
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~~ 47 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLIV 47 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEEE
Confidence 36677899999999999999999999999987666553 4455555
No 78
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=85.39 E-value=0.52 Score=54.09 Aligned_cols=47 Identities=32% Similarity=0.535 Sum_probs=41.6
Q ss_pred CCCcchhhHHHHHHHHHHHHHHhhccCCCC----CCCCccchHHHHHHHHH
Q 009555 333 KPTKHFATERQRREQLNGKFKALKDLVPNP----TKNDRASVVGDAIEYIK 379 (532)
Q Consensus 333 ~~~~H~~aER~RR~klnekf~~LrsLvP~~----~K~DKaSIL~dAI~YIk 379 (532)
++++-.-+-|-||.|=|+-|.+|..+||-. +..|||||+--||-|+|
T Consensus 46 rkEkSRdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLR 96 (768)
T KOG3558|consen 46 RKEKSRDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLR 96 (768)
T ss_pred HhhhhhhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHH
Confidence 456667788999999999999999999954 57899999999999986
No 79
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=85.39 E-value=0.51 Score=45.27 Aligned_cols=51 Identities=29% Similarity=0.410 Sum_probs=43.9
Q ss_pred CCCcchhhHHHHHHHHHHHHHHhhccCCCC--CCCCccchHHHHHHHHHHHHH
Q 009555 333 KPTKHFATERQRREQLNGKFKALKDLVPNP--TKNDRASVVGDAIEYIKELLR 383 (532)
Q Consensus 333 ~~~~H~~aER~RR~klnekf~~LrsLvP~~--~K~DKaSIL~dAI~YIk~Lq~ 383 (532)
++.-|++.||+|=..||+-|..||.++|.. .|.+|.--|.-|..||..|-+
T Consensus 78 qrv~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~ 130 (173)
T KOG4447|consen 78 QRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQ 130 (173)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhh
Confidence 456789999999999999999999999964 577787789999999988754
No 80
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=85.21 E-value=0.84 Score=49.73 Aligned_cols=43 Identities=33% Similarity=0.461 Sum_probs=38.0
Q ss_pred hhhHHHHHHHHHHHHHHhhccCCCC----CCCCccchHHHHHHHHHH
Q 009555 338 FATERQRREQLNGKFKALKDLVPNP----TKNDRASVVGDAIEYIKE 380 (532)
Q Consensus 338 ~~aER~RR~klnekf~~LrsLvP~~----~K~DKaSIL~dAI~YIk~ 380 (532)
..+-|.||++=|-.|.+|..+||-. ...||++|+.-|-.|||-
T Consensus 6 KnaA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKm 52 (598)
T KOG3559|consen 6 KNAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKM 52 (598)
T ss_pred hhHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHH
Confidence 3467899999999999999999954 578999999999999974
No 81
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=85.13 E-value=2.5 Score=41.48 Aligned_cols=68 Identities=12% Similarity=0.116 Sum_probs=54.9
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeCcEEEEEEEEEEccCCccCHHHHHHHHHHHHHH
Q 009555 450 DEVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIGDYYSFLFNTKIYEGSSVYAGSIANKLIEVMDK 520 (532)
Q Consensus 450 ~dV~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg~~vi~tI~aKV~eGs~v~ae~IkqaL~eaL~~ 520 (532)
..+.|.+.+.+|+|++..|.++|-+.|..++.++.+..++.+...+.+. +...+..++..+|..+-..
T Consensus 7 ~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs---~~~~~~~~le~~L~~l~~~ 74 (190)
T PRK11589 7 HYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLS---GSWNAITLIESTLPLKGAE 74 (190)
T ss_pred cEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEe---CChhHHHHHHHHHHhhhhh
Confidence 3578999999999999999999999999999999999999766555553 4444677888777766544
No 82
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=82.67 E-value=10 Score=33.00 Aligned_cols=61 Identities=13% Similarity=0.244 Sum_probs=43.7
Q ss_pred EEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeC-cEEEEEEEEEEccCCccCHHHHHHHHH
Q 009555 452 VTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIG-DYYSFLFNTKIYEGSSVYAGSIANKLI 515 (532)
Q Consensus 452 V~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg-~~vi~tI~aKV~eGs~v~ae~IkqaL~ 515 (532)
..|-+..++++|.|.+||++|...|+.+++..+-... ...-|.|.+.++ |. ....+++.|.
T Consensus 15 tslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDie-g~--~~~~~~~~l~ 76 (90)
T cd04931 15 ISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLD-KK--SAPALDPIIK 76 (90)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEE-cC--CCHHHHHHHH
Confidence 3455566889999999999999999999999987653 344567777764 43 2355555443
No 83
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=82.47 E-value=5 Score=30.56 Aligned_cols=45 Identities=11% Similarity=0.157 Sum_probs=36.1
Q ss_pred EEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeC-cEEEEEEEEE
Q 009555 454 IKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIG-DYYSFLFNTK 498 (532)
Q Consensus 454 IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg-~~vi~tI~aK 498 (532)
|.|....++|.|.+++.+|.+.|+.|....+...+ +..+..|.+.
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~ 46 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFS 46 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEEC
Confidence 35678999999999999999999999888877655 5655555554
No 84
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=82.37 E-value=8.7 Score=31.59 Aligned_cols=59 Identities=10% Similarity=0.192 Sum_probs=42.3
Q ss_pred EEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeC-cEEEEEEEEEEccCCccCHHHHHHHHHHH
Q 009555 455 KLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIG-DYYSFLFNTKIYEGSSVYAGSIANKLIEV 517 (532)
Q Consensus 455 kI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg-~~vi~tI~aKV~eGs~v~ae~IkqaL~ea 517 (532)
-+..++++|.|.+||+++...|+.+++..+-... ...-|.|.+.+. | ..+.+++.|.++
T Consensus 4 ~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~-~---~~~~~~~~l~~L 63 (74)
T cd04904 4 IFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCE-V---DRGDLDQLISSL 63 (74)
T ss_pred EEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEE-c---ChHHHHHHHHHH
Confidence 3455779999999999999999999999987654 344567777764 4 234455555444
No 85
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=81.97 E-value=2.8 Score=36.94 Aligned_cols=71 Identities=15% Similarity=0.273 Sum_probs=56.9
Q ss_pred eEEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeCcEEEEEEEEEEccCCccCHHHHHHHHHHHHHHhh
Q 009555 451 EVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIGDYYSFLFNTKIYEGSSVYAGSIANKLIEVMDKQY 522 (532)
Q Consensus 451 dV~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg~~vi~tI~aKV~eGs~v~ae~IkqaL~eaL~~~~ 522 (532)
-+.|.|.-.+|+|....|..+|-++|+.++.++=+..++++...+-+... .+..+..++++.|.+...+..
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~-~~~~d~~~lr~~l~~~~~~lg 73 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDIS-KEVVDFAALRDELAAEGKKLG 73 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCC-hHhccHHHHHHHHHHHHHhcC
Confidence 36788899999999999999999999999999988888887766666542 244678888888877766543
No 86
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=80.49 E-value=8.1 Score=36.63 Aligned_cols=67 Identities=12% Similarity=0.129 Sum_probs=53.0
Q ss_pred CCeEEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEE-eeCcEEEEEEEEEEccCCccCHHHHHHHHHH
Q 009555 449 DDEVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGG-HIGDYYSFLFNTKIYEGSSVYAGSIANKLIE 516 (532)
Q Consensus 449 g~dV~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS-~vg~~vi~tI~aKV~eGs~v~ae~IkqaL~e 516 (532)
+..+.+.+.-++|-|.|+++|.++-..++.|++++=+ ..+|+.-.|+..... +-..+.+.|..+|..
T Consensus 70 ~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~s-sm~~~V~~ii~kl~k 137 (150)
T COG4492 70 ERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTS-SMEKDVDKIIEKLRK 137 (150)
T ss_pred ceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEch-hhhhhHHHHHHHHhc
Confidence 4467788888999999999999999999999999854 788888888877764 333466777666654
No 87
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=79.68 E-value=2.2 Score=33.35 Aligned_cols=56 Identities=9% Similarity=0.064 Sum_probs=39.3
Q ss_pred EEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeCcEEEEEEEEEEccCCccCHHHHHHHHH
Q 009555 455 KLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIGDYYSFLFNTKIYEGSSVYAGSIANKLI 515 (532)
Q Consensus 455 kI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg~~vi~tI~aKV~eGs~v~ae~IkqaL~ 515 (532)
-+.+.+++|++.+|+.+|.+.+..+........++.....|.+.+. ...++.++|+
T Consensus 3 ~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~~~-----~l~~li~~l~ 58 (69)
T cd04901 3 LHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDIDSE-----VSEELLEALR 58 (69)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcCCC-----CCHHHHHHHH
Confidence 4577899999999999999999999777655545665555554432 3345555554
No 88
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=79.63 E-value=8.5 Score=45.17 Aligned_cols=61 Identities=13% Similarity=0.184 Sum_probs=49.7
Q ss_pred ceEEEEEeCC-----eEEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEee--CcEEEEEEEEEEcc
Q 009555 441 TEVDVRIIDD-----EVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHI--GDYYSFLFNTKIYE 501 (532)
Q Consensus 441 peVeVriig~-----dV~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~v--g~~vi~tI~aKV~e 501 (532)
.-|+|+..+. .|.|.|.+.+|.|+|.+|..+|.+.++.|.++++... ++.....|.++|.+
T Consensus 651 R~I~V~W~~~~~~~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~ 718 (743)
T PRK10872 651 RIVDAVWGESYSSGYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYN 718 (743)
T ss_pred eEEEeEecCCCCceeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECC
Confidence 4577876432 3689999999999999999999999999999998765 46777778888863
No 89
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=78.77 E-value=11 Score=47.56 Aligned_cols=74 Identities=15% Similarity=0.169 Sum_probs=62.1
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEee-----CcEEEEEEEEEEccCCccCHHHHHHHHHHHHHHhhh
Q 009555 450 DEVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHI-----GDYYSFLFNTKIYEGSSVYAGSIANKLIEVMDKQYA 523 (532)
Q Consensus 450 ~dV~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~v-----g~~vi~tI~aKV~eGs~v~ae~IkqaL~eaL~~~~~ 523 (532)
+.+.++|....++..|++|+-+|+++||.|+...--.+ ....++.|.+....+..++.+++.+.+.+++.+...
T Consensus 488 ~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~~~~~~~~~~~~~~a~~~v~~ 566 (1528)
T PF05088_consen 488 GRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGDALDLDDIRERFEEAFEAVWN 566 (1528)
T ss_pred CeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCccccHHHHHHHHHHHHHHHhc
Confidence 46899999999999999999999999999999864332 237788899998888778899999999999887643
No 90
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=78.13 E-value=4.7 Score=41.36 Aligned_cols=52 Identities=29% Similarity=0.386 Sum_probs=43.6
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHhhccCCCC---CCCCccchHHHHHHHHHHHHH
Q 009555 332 GKPTKHFATERQRREQLNGKFKALKDLVPNP---TKNDRASVVGDAIEYIKELLR 383 (532)
Q Consensus 332 s~~~~H~~aER~RR~klnekf~~LrsLvP~~---~K~DKaSIL~dAI~YIk~Lq~ 383 (532)
.++.+-+..||.|=-.+|+-|..||.++|.. .|+.|.-.|.-|-+||..|++
T Consensus 71 ~rR~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~ 125 (254)
T KOG3898|consen 71 LRRLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSE 125 (254)
T ss_pred hhcccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhcc
Confidence 4566777889988788999999999999943 688888899999999987764
No 91
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=78.12 E-value=6.3 Score=34.37 Aligned_cols=64 Identities=14% Similarity=0.170 Sum_probs=45.6
Q ss_pred EEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeC--cEEEEEEEEEEccCCccCHHHHHHHHHHHH
Q 009555 453 TIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIG--DYYSFLFNTKIYEGSSVYAGSIANKLIEVM 518 (532)
Q Consensus 453 ~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg--~~vi~tI~aKV~eGs~v~ae~IkqaL~eaL 518 (532)
.|.+..++++|.|.+|..+|-..|..|.+..++... +..-.+|.+.+ |..-..+.|...|.+++
T Consensus 4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~--~d~~~ieqI~kQL~Kli 69 (84)
T PRK13562 4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDI--QDDTSLHILIKKLKQQI 69 (84)
T ss_pred EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeC--CCHHHHHHHHHHHhCCc
Confidence 577888999999999999999999999999888765 44444555543 33333455555555443
No 92
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=77.93 E-value=6.7 Score=33.39 Aligned_cols=63 Identities=13% Similarity=0.085 Sum_probs=45.1
Q ss_pred EEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeC--cEEEEEEEEEEccCCccCHHHHHHHHHHH
Q 009555 452 VTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIG--DYYSFLFNTKIYEGSSVYAGSIANKLIEV 517 (532)
Q Consensus 452 V~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg--~~vi~tI~aKV~eGs~v~ae~IkqaL~ea 517 (532)
..|.+..++++|.|.+|..++..-|..|.+.+++... +..-.+|.+. |+.-..+.|...|.++
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~---~~~~~i~qi~kQL~KL 67 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAV---CTENEATLLVSQLKKL 67 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEE---CCHHHHHHHHHHHhCC
Confidence 3578888999999999999999999999999988655 4444455543 3333345555555443
No 93
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=77.64 E-value=10 Score=44.94 Aligned_cols=79 Identities=16% Similarity=0.061 Sum_probs=60.4
Q ss_pred eEEEEEeCCeEEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEE-eeCcEEEEEEEEEEccCCccCHHHHHH---HHHHH
Q 009555 442 EVDVRIIDDEVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGG-HIGDYYSFLFNTKIYEGSSVYAGSIAN---KLIEV 517 (532)
Q Consensus 442 eVeVriig~dV~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS-~vg~~vi~tI~aKV~eGs~v~ae~Ikq---aL~ea 517 (532)
.+.++...+...|-|.|+.+++++..|..++...|++|+.|.+- +.+|+.+-+|.+.--+|..+..+.... .|.++
T Consensus 675 ~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~~dr~~~~~~~l~~~ 754 (867)
T COG2844 675 LISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVEEDRRAALRGELIEA 754 (867)
T ss_pred eeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccchhHHHHHHHHHHHH
Confidence 33445556778899999999999999999999999999999974 667889899988766677666444433 44444
Q ss_pred HHH
Q 009555 518 MDK 520 (532)
Q Consensus 518 L~~ 520 (532)
+.+
T Consensus 755 l~s 757 (867)
T COG2844 755 LLS 757 (867)
T ss_pred Hhc
Confidence 443
No 94
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=77.63 E-value=9 Score=32.56 Aligned_cols=62 Identities=11% Similarity=0.089 Sum_probs=45.7
Q ss_pred EEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeC--cEEEEEEEEEEccCCccCHHHHHHHHHHHH
Q 009555 453 TIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIG--DYYSFLFNTKIYEGSSVYAGSIANKLIEVM 518 (532)
Q Consensus 453 ~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg--~~vi~tI~aKV~eGs~v~ae~IkqaL~eaL 518 (532)
.|.|.-.+++|.|.+|+.++..-|..|.+.++.... +..-.+|.+ . +.-..+.|...|.+++
T Consensus 5 ~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v--~--~~~~i~ql~kQL~KL~ 68 (76)
T PRK11152 5 QLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV--A--SERPIDLLSSQLNKLV 68 (76)
T ss_pred EEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE--C--CCchHHHHHHHHhcCc
Confidence 577788999999999999999999999999998754 444444444 3 2334567766666554
No 95
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=77.00 E-value=11 Score=43.92 Aligned_cols=60 Identities=10% Similarity=0.069 Sum_probs=49.3
Q ss_pred ceEEEEEeCC-----eEEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeC-cEEEEEEEEEEc
Q 009555 441 TEVDVRIIDD-----EVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIG-DYYSFLFNTKIY 500 (532)
Q Consensus 441 peVeVriig~-----dV~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg-~~vi~tI~aKV~ 500 (532)
.-|+|+..+. .+.|+|.+.++.|+|.+|+.+|-+.++.|.++++...+ +.+...|.++|.
T Consensus 611 r~i~v~W~~~~~~~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~ 676 (702)
T PRK11092 611 KFMAVEWDKETEQEFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTAR 676 (702)
T ss_pred eeEEeEECCCCCceeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEEC
Confidence 4577776532 47899999999999999999999999999999987664 566667888885
No 96
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=76.59 E-value=9.9 Score=36.58 Aligned_cols=64 Identities=14% Similarity=0.214 Sum_probs=47.4
Q ss_pred EEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeC--cEEEEEEEEEEccCCccCHHHHHHHHHHHHH
Q 009555 453 TIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIG--DYYSFLFNTKIYEGSSVYAGSIANKLIEVMD 519 (532)
Q Consensus 453 ~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg--~~vi~tI~aKV~eGs~v~ae~IkqaL~eaL~ 519 (532)
.|.|.-++++|.|.+|..+|...|+.|.+..+.... +...++|++. +..-..+.|...|.++++
T Consensus 4 ~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~---~~~~~i~qi~kQl~KLid 69 (161)
T PRK11895 4 TLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTS---GDEQVIEQITKQLNKLID 69 (161)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEE---CCHHHHHHHHHHHhcccc
Confidence 577788999999999999999999999999988664 5555666655 333335666665655543
No 97
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=76.10 E-value=12 Score=36.39 Aligned_cols=67 Identities=7% Similarity=0.139 Sum_probs=49.5
Q ss_pred EEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEee--CcEEEEEEEEEEccCCccCHHHHHHHHHHHHHHhh
Q 009555 453 TIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHI--GDYYSFLFNTKIYEGSSVYAGSIANKLIEVMDKQY 522 (532)
Q Consensus 453 ~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~v--g~~vi~tI~aKV~eGs~v~ae~IkqaL~eaL~~~~ 522 (532)
.|.|.-.+++|.|.+|..+|-..|+.|.+.++... .+..-.+|. +..+... .+.|.+.|.++++-..
T Consensus 4 ~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIv--v~~~~~~-ieqL~kQL~KLidVl~ 72 (174)
T CHL00100 4 TLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMV--VPGDDRT-IEQLTKQLYKLVNILK 72 (174)
T ss_pred EEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEE--EECCHHH-HHHHHHHHHHHhHhhE
Confidence 57888899999999999999999999999998763 344433443 4323222 6888888888776543
No 98
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=75.56 E-value=9.9 Score=36.43 Aligned_cols=63 Identities=10% Similarity=0.121 Sum_probs=46.2
Q ss_pred EEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeC--cEEEEEEEEEEccCCccCHHHHHHHHHHHH
Q 009555 453 TIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIG--DYYSFLFNTKIYEGSSVYAGSIANKLIEVM 518 (532)
Q Consensus 453 ~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg--~~vi~tI~aKV~eGs~v~ae~IkqaL~eaL 518 (532)
.|.|.-++++|.|.+|..+|...|+.+.+..++..+ +...++|.+.. ..-..+.|...|.+++
T Consensus 3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~---d~~~i~qi~kQl~Kli 67 (157)
T TIGR00119 3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG---DDKVLEQITKQLNKLV 67 (157)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC---CHHHHHHHHHHHhcCc
Confidence 477788999999999999999999999999988775 45556666652 2223455555555444
No 99
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=75.09 E-value=8.8 Score=30.09 Aligned_cols=57 Identities=11% Similarity=0.144 Sum_probs=40.4
Q ss_pred EEEecCCCChHHHHHHHHHHcCCcEEEEEEEe--eCcEEEEEEEEEEccCCccCHHHHHHHHHH
Q 009555 455 KLVQRKKIDCLLFVSRVLDELQLDLHHVAGGH--IGDYYSFLFNTKIYEGSSVYAGSIANKLIE 516 (532)
Q Consensus 455 kI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~--vg~~vi~tI~aKV~eGs~v~ae~IkqaL~e 516 (532)
-+....++|.+.+|.++|.+.|+.|.+..+.. .++.....|++.. . .+.++.+.|.+
T Consensus 3 ~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~----~-~~~~~~~~l~~ 61 (73)
T cd04902 3 VVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDE----P-VPDEVLEELRA 61 (73)
T ss_pred EEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCC----C-CCHHHHHHHHc
Confidence 45778999999999999999999998887655 3466665665543 1 13455555543
No 100
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=74.09 E-value=30 Score=40.33 Aligned_cols=60 Identities=10% Similarity=0.061 Sum_probs=49.8
Q ss_pred ceEEEEEeCC-----eEEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEee-CcEEEEEEEEEEc
Q 009555 441 TEVDVRIIDD-----EVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHI-GDYYSFLFNTKIY 500 (532)
Q Consensus 441 peVeVriig~-----dV~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~v-g~~vi~tI~aKV~ 500 (532)
.-|+|+...+ .+.|+|.+.+++|+|.+|+.+|-+.+..|.++++... ++.+...|.++|.
T Consensus 595 r~I~v~W~~~~~~~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~ 660 (683)
T TIGR00691 595 KIIEVEWNASKPRRFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIK 660 (683)
T ss_pred cEEEEEecCCCCceeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEEC
Confidence 4577776443 4789999999999999999999999999999998766 4677777888885
No 101
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=73.80 E-value=8.6 Score=31.06 Aligned_cols=55 Identities=9% Similarity=0.107 Sum_probs=38.9
Q ss_pred CCCChHHHHHHHHHHcCCcEEEEEEEe--eCcEEEEEEEEEEccCCccCHHHHHHHHHHH
Q 009555 460 KKIDCLLFVSRVLDELQLDLHHVAGGH--IGDYYSFLFNTKIYEGSSVYAGSIANKLIEV 517 (532)
Q Consensus 460 kR~GlLl~VL~aLEeLgLdVlsAsiS~--vg~~vi~tI~aKV~eGs~v~ae~IkqaL~ea 517 (532)
+++|.|.+|+.++..-|..|.+.+++. .++..-++|.+. |..-..+.|...|.++
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~---~~~~~i~~l~~Ql~Kl 57 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVS---GDDREIEQLVKQLEKL 57 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEE---S-CCHHHHHHHHHHCS
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEe---eCchhHHHHHHHHhcc
Confidence 468999999999999999999999988 446666566555 3233456666666544
No 102
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=71.83 E-value=17 Score=42.53 Aligned_cols=71 Identities=6% Similarity=-0.058 Sum_probs=59.8
Q ss_pred EEEEEEe-cCCCChHHHHHHHHHHcCCcEEEEEEEeeCcEEEEEEEEEEccCCccCHHHHHHHHHHHHHHhhh
Q 009555 452 VTIKLVQ-RKKIDCLLFVSRVLDELQLDLHHVAGGHIGDYYSFLFNTKIYEGSSVYAGSIANKLIEVMDKQYA 523 (532)
Q Consensus 452 V~IkI~C-~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg~~vi~tI~aKV~eGs~v~ae~IkqaL~eaL~~~~~ 523 (532)
..+.|.. ++++|++.++..+|--.++.|.+|++.+ +|..+..|.+...-|..-++..+.|.++.++.....
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQEFLQAYKSGVYSELP 618 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChHHHHHHHHHhhcCCCC
Confidence 4455555 9999999999999999999999999999 777778888887778888999999999888765543
No 103
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=70.71 E-value=26 Score=26.85 Aligned_cols=34 Identities=15% Similarity=0.187 Sum_probs=25.9
Q ss_pred EEEEEec---CCCChHHHHHHHHHHcCCcEEEEEEEe
Q 009555 453 TIKLVQR---KKIDCLLFVSRVLDELQLDLHHVAGGH 486 (532)
Q Consensus 453 ~IkI~C~---kR~GlLl~VL~aLEeLgLdVlsAsiS~ 486 (532)
.|.|.+. +.+|.+.+|+++|.+.|+.|.-...+.
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~ 39 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGS 39 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 3555553 467889999999999999997775444
No 104
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=70.47 E-value=34 Score=28.59 Aligned_cols=56 Identities=9% Similarity=0.101 Sum_probs=40.4
Q ss_pred EecCCCChHHHHHHHHHHcCCcEEEEEEEeeC-cEEEEEEEEEEccCCccCHHHHHHHHHH
Q 009555 457 VQRKKIDCLLFVSRVLDELQLDLHHVAGGHIG-DYYSFLFNTKIYEGSSVYAGSIANKLIE 516 (532)
Q Consensus 457 ~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg-~~vi~tI~aKV~eGs~v~ae~IkqaL~e 516 (532)
.-++++|.|.++|++++..|+.+++..+-... ...-|.|.+.++ |.. +.|++.|.+
T Consensus 6 ~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e-~~~---~~i~~~l~~ 62 (74)
T cd04929 6 SLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCE-CDQ---RRLDELVQL 62 (74)
T ss_pred EcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEE-cCH---HHHHHHHHH
Confidence 33678999999999999999999999886653 345567777764 332 355555533
No 105
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=69.66 E-value=22 Score=37.31 Aligned_cols=74 Identities=7% Similarity=0.021 Sum_probs=53.0
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeCcEEEEEEEEEEccC-CccCHHHHHHHHHHHHHHhhh
Q 009555 450 DEVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIGDYYSFLFNTKIYEG-SSVYAGSIANKLIEVMDKQYA 523 (532)
Q Consensus 450 ~dV~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg~~vi~tI~aKV~eG-s~v~ae~IkqaL~eaL~~~~~ 523 (532)
....+.+.|+.++|+...|...|-+.|..|++++--.....-.|.++++...+ ...+.+++.+.+..+.++..+
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~~~~~~~~l~~~f~~~a~~f~m 80 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGGPLDREALRAAFAPLAEEFGM 80 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecCCCcccHHHHHHHHHHHHHhhCc
Confidence 34678999999999999999999999999999986532222223345554333 337788888888885554443
No 106
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=64.50 E-value=22 Score=28.48 Aligned_cols=45 Identities=11% Similarity=0.078 Sum_probs=32.3
Q ss_pred EEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeC-cEEEEEEEEEEc
Q 009555 455 KLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIG-DYYSFLFNTKIY 500 (532)
Q Consensus 455 kI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg-~~vi~tI~aKV~ 500 (532)
.|.-+.+||.|.+++++|.+ +.+|+.......+ +.....+.+++.
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~ 47 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVP 47 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeC
Confidence 45568999999999999999 9999988765533 233334445554
No 107
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=64.23 E-value=7.8 Score=44.99 Aligned_cols=62 Identities=19% Similarity=0.353 Sum_probs=51.7
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHhhccCCCC-----CCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Q 009555 332 GKPTKHFATERQRREQLNGKFKALKDLVPNP-----TKNDRASVVGDAIEYIKELLRTVNELKLLVE 393 (532)
Q Consensus 332 s~~~~H~~aER~RR~klnekf~~LrsLvP~~-----~K~DKaSIL~dAI~YIk~Lq~~v~~L~~~~e 393 (532)
.+...|+.+|.+||..++-.|..|.++.-+. .|+.++.-+...++||..++.+...+.++-.
T Consensus 650 ~r~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e~~ 716 (856)
T KOG3582|consen 650 NRPITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEEAH 716 (856)
T ss_pred CCcccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchhhh
Confidence 5788999999999999999999999998765 4667777789999999988888777765543
No 108
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=63.97 E-value=44 Score=30.34 Aligned_cols=48 Identities=10% Similarity=0.161 Sum_probs=36.3
Q ss_pred EEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeC-cEEEEEEEEEEc
Q 009555 453 TIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIG-DYYSFLFNTKIY 500 (532)
Q Consensus 453 ~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg-~~vi~tI~aKV~ 500 (532)
.|-+..++++|.|.+||+.|...|+.+++..+-... ...-|.|.+.+.
T Consensus 43 Slifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdie 91 (115)
T cd04930 43 TLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCE 91 (115)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEE
Confidence 344455788999999999999999999999987653 233456666654
No 109
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=63.24 E-value=40 Score=24.94 Aligned_cols=34 Identities=12% Similarity=0.155 Sum_probs=26.1
Q ss_pred EEEEEec---CCCChHHHHHHHHHHcCCcEEEEEEEe
Q 009555 453 TIKLVQR---KKIDCLLFVSRVLDELQLDLHHVAGGH 486 (532)
Q Consensus 453 ~IkI~C~---kR~GlLl~VL~aLEeLgLdVlsAsiS~ 486 (532)
.|+|.+. ++.+.+.+++++|.+.++.|.....+.
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~~~ 38 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQGS 38 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcCC
Confidence 3556543 567888999999999999998886544
No 110
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=62.41 E-value=55 Score=32.27 Aligned_cols=68 Identities=6% Similarity=0.049 Sum_probs=51.0
Q ss_pred EEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeC----c--EEEEEEEEEEccCCccCHHHHHHHHHHHHHHh
Q 009555 452 VTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIG----D--YYSFLFNTKIYEGSSVYAGSIANKLIEVMDKQ 521 (532)
Q Consensus 452 V~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg----~--~vi~tI~aKV~eGs~v~ae~IkqaL~eaL~~~ 521 (532)
+.|.|.-.+++|++..|.++|-+.|+.|...+.-+.+ + .+...+.+.+..+ +..+++.++|.++.+.-
T Consensus 96 ~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~--~~~~~L~~~l~~l~~eL 169 (190)
T PRK11589 96 VWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPAS--QDAANIEQAFKALCTEL 169 (190)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCC--CCHHHHHHHHHHHHHHh
Confidence 6788888999999999999999999999988876654 3 4444455555433 45788888887766543
No 111
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=62.05 E-value=50 Score=25.48 Aligned_cols=29 Identities=10% Similarity=0.134 Sum_probs=23.1
Q ss_pred CCCChHHHHHHHHHHcCCcEEEEEEEeeC
Q 009555 460 KKIDCLLFVSRVLDELQLDLHHVAGGHIG 488 (532)
Q Consensus 460 kR~GlLl~VL~aLEeLgLdVlsAsiS~vg 488 (532)
+++|.+.+++++|.+.|++|.-...+..+
T Consensus 13 ~~~~~~~~if~~L~~~~I~v~~i~q~~s~ 41 (66)
T cd04919 13 NMIGIAGRMFTTLADHRINIEMISQGASE 41 (66)
T ss_pred CCcCHHHHHHHHHHHCCCCEEEEEecCcc
Confidence 46788999999999999999776554433
No 112
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=59.12 E-value=53 Score=34.85 Aligned_cols=53 Identities=9% Similarity=0.102 Sum_probs=41.0
Q ss_pred eCCeEEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEe---e--CcEEEEEEEEEEc
Q 009555 448 IDDEVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGH---I--GDYYSFLFNTKIY 500 (532)
Q Consensus 448 ig~dV~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~---v--g~~vi~tI~aKV~ 500 (532)
.+..+.|.|.-+.++|.|.++++.+.+.+.+|+++.... . .+.....|.+++.
T Consensus 302 ~gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~ 359 (380)
T TIGR01127 302 SGRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETR 359 (380)
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeC
Confidence 355678888999999999999999999999999986552 1 2455556666654
No 113
>PRK08198 threonine dehydratase; Provisional
Probab=57.91 E-value=52 Score=35.27 Aligned_cols=52 Identities=8% Similarity=0.042 Sum_probs=40.9
Q ss_pred eCCeEEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEee-----CcEEEEEEEEEE
Q 009555 448 IDDEVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHI-----GDYYSFLFNTKI 499 (532)
Q Consensus 448 ig~dV~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~v-----g~~vi~tI~aKV 499 (532)
.+..+.+.|.-++++|.|.+|++.|-+.|..|+.+..... .+...+.+.+++
T Consensus 324 ~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~ 380 (404)
T PRK08198 324 AGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLET 380 (404)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEe
Confidence 3556788889999999999999999999999998876532 245555566665
No 114
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=57.64 E-value=14 Score=38.32 Aligned_cols=52 Identities=29% Similarity=0.301 Sum_probs=42.7
Q ss_pred CCCcchhhHHHHHHHHHHHHHHhhccCCCC---CCCCccchHHHHHHHHHHHHHH
Q 009555 333 KPTKHFATERQRREQLNGKFKALKDLVPNP---TKNDRASVVGDAIEYIKELLRT 384 (532)
Q Consensus 333 ~~~~H~~aER~RR~klnekf~~LrsLvP~~---~K~DKaSIL~dAI~YIk~Lq~~ 384 (532)
++..-+..||+|=..||.-|..||..||.. .|.+|-.-|.-|-.||--|-..
T Consensus 174 rr~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~ 228 (285)
T KOG4395|consen 174 RRLAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCL 228 (285)
T ss_pred hhcccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHh
Confidence 456677899999999999999999999976 5667777888899998666443
No 115
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=57.31 E-value=64 Score=24.67 Aligned_cols=33 Identities=12% Similarity=0.243 Sum_probs=25.0
Q ss_pred EEEEec---CCCChHHHHHHHHHHcCCcEEEEEEEe
Q 009555 454 IKLVQR---KKIDCLLFVSRVLDELQLDLHHVAGGH 486 (532)
Q Consensus 454 IkI~C~---kR~GlLl~VL~aLEeLgLdVlsAsiS~ 486 (532)
|.|.+. ++++.+.+++.+|.+.++.|.-...+.
T Consensus 4 isivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~ 39 (66)
T cd04916 4 IMVVGEGMKNTVGVSARATAALAKAGINIRMINQGS 39 (66)
T ss_pred EEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 455553 467889999999999999997775443
No 116
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=56.16 E-value=67 Score=24.49 Aligned_cols=33 Identities=12% Similarity=0.104 Sum_probs=24.6
Q ss_pred EEEEec---CCCChHHHHHHHHHHcCCcEEEEEEEe
Q 009555 454 IKLVQR---KKIDCLLFVSRVLDELQLDLHHVAGGH 486 (532)
Q Consensus 454 IkI~C~---kR~GlLl~VL~aLEeLgLdVlsAsiS~ 486 (532)
|.|.+. +.++.+.+++++|.+.++.|.-...+.
T Consensus 4 isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~ 39 (66)
T cd04924 4 VAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGS 39 (66)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 445543 467889999999999999987665443
No 117
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=55.32 E-value=87 Score=26.29 Aligned_cols=47 Identities=0% Similarity=-0.012 Sum_probs=31.6
Q ss_pred EEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeC-cEEEEEEEEEEc
Q 009555 452 VTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIG-DYYSFLFNTKIY 500 (532)
Q Consensus 452 V~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg-~~vi~tI~aKV~ 500 (532)
.++.|.-+.+||-|.+++++|- +.+|..+...... +.....|..++.
T Consensus 2 ~vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~ 49 (85)
T cd04906 2 ALLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVA 49 (85)
T ss_pred eEEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeC
Confidence 4577788999999999999998 6676665554322 333344555554
No 118
>PRK06382 threonine dehydratase; Provisional
Probab=53.76 E-value=59 Score=35.13 Aligned_cols=53 Identities=11% Similarity=0.125 Sum_probs=40.7
Q ss_pred eCCeEEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEE----ee-CcEEEEEEEEEEc
Q 009555 448 IDDEVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGG----HI-GDYYSFLFNTKIY 500 (532)
Q Consensus 448 ig~dV~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS----~v-g~~vi~tI~aKV~ 500 (532)
.+..+.|.|.-+.++|.|.+|+++|.+.+.+|+++... .. .+....+|++++.
T Consensus 327 ~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~ 384 (406)
T PRK06382 327 LGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR 384 (406)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC
Confidence 35567788888999999999999999999999988764 22 2455556666653
No 119
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=53.20 E-value=50 Score=29.54 Aligned_cols=64 Identities=9% Similarity=0.122 Sum_probs=44.1
Q ss_pred eEEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeCc--EEEEEEEEEEccCCccCHHHHHHHHHHHH
Q 009555 451 EVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIGD--YYSFLFNTKIYEGSSVYAGSIANKLIEVM 518 (532)
Q Consensus 451 dV~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg~--~vi~tI~aKV~eGs~v~ae~IkqaL~eaL 518 (532)
...|.+..++++|.|.+|.-+|-.-|..|-+.+++..++ .--.+|. +. +. -..+.|...|.+++
T Consensus 8 ~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtiv--v~-~~-~~i~Qi~kQL~KLi 73 (96)
T PRK08178 8 NVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLL--VN-DD-QRLEQMISQIEKLE 73 (96)
T ss_pred CEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEE--Ec-Cc-hHHHHHHHHHhCCc
Confidence 456888889999999999999999999999888876654 3333443 33 22 23455555554443
No 120
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=52.50 E-value=60 Score=23.39 Aligned_cols=26 Identities=8% Similarity=0.093 Sum_probs=21.9
Q ss_pred CCChHHHHHHHHHHcCCcEEEEEEEe
Q 009555 461 KIDCLLFVSRVLDELQLDLHHVAGGH 486 (532)
Q Consensus 461 R~GlLl~VL~aLEeLgLdVlsAsiS~ 486 (532)
.+|.+.+++++|.+.++.|.....+.
T Consensus 13 ~~~~~~~i~~~l~~~~i~i~~i~~~~ 38 (60)
T cd04868 13 TPGVAAKIFSALAEAGINVDMISQSE 38 (60)
T ss_pred CCCHHHHHHHHHHHCCCcEEEEEcCC
Confidence 57889999999999999998776543
No 121
>PRK11899 prephenate dehydratase; Provisional
Probab=50.51 E-value=1.1e+02 Score=31.80 Aligned_cols=68 Identities=15% Similarity=0.086 Sum_probs=50.3
Q ss_pred EEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeC-cEEEEEEEEEEccCCccCHHHHHHHHHHHHHHh
Q 009555 452 VTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIG-DYYSFLFNTKIYEGSSVYAGSIANKLIEVMDKQ 521 (532)
Q Consensus 452 V~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg-~~vi~tI~aKV~eGs~v~ae~IkqaL~eaL~~~ 521 (532)
..|-+..++++|.|.+||.+|...|+.++...+=... ...-|.|.+.++ |. .....++++|.++-+.+
T Consensus 195 tsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~e-g~-~~d~~v~~aL~~l~~~~ 263 (279)
T PRK11899 195 TTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIE-GH-PEDRNVALALEELRFFS 263 (279)
T ss_pred EEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEE-CC-CCCHHHHHHHHHHHHhc
Confidence 3344445789999999999999999999999988764 456778888875 43 33456777777765544
No 122
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=48.74 E-value=95 Score=24.41 Aligned_cols=22 Identities=5% Similarity=0.058 Sum_probs=19.7
Q ss_pred CCCChHHHHHHHHHHcCCcEEE
Q 009555 460 KKIDCLLFVSRVLDELQLDLHH 481 (532)
Q Consensus 460 kR~GlLl~VL~aLEeLgLdVls 481 (532)
..+|.+.+++++|.+.++.|..
T Consensus 13 ~~~gi~~~if~aL~~~~I~v~~ 34 (64)
T cd04937 13 GVPGVMAKIVGALSKEGIEILQ 34 (64)
T ss_pred CCcCHHHHHHHHHHHCCCCEEE
Confidence 5789999999999999999963
No 123
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=47.88 E-value=1.2e+02 Score=23.29 Aligned_cols=35 Identities=6% Similarity=0.192 Sum_probs=25.6
Q ss_pred CCCChHHHHHHHHHHcCCcEEEEEEEeeCcEEEEEEE
Q 009555 460 KKIDCLLFVSRVLDELQLDLHHVAGGHIGDYYSFLFN 496 (532)
Q Consensus 460 kR~GlLl~VL~aLEeLgLdVlsAsiS~vg~~vi~tI~ 496 (532)
.+.|...+|+++|++.++.|..... ..+.+.+++.
T Consensus 12 ~~~~~~~~if~~l~~~~i~v~~i~t--~~~~is~~v~ 46 (62)
T cd04890 12 GEVGFLRKIFEILEKHGISVDLIPT--SENSVTLYLD 46 (62)
T ss_pred cccCHHHHHHHHHHHcCCeEEEEec--CCCEEEEEEe
Confidence 4678899999999999999998853 2244444443
No 124
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=43.57 E-value=81 Score=24.98 Aligned_cols=33 Identities=15% Similarity=0.025 Sum_probs=25.2
Q ss_pred CCCChHHHHHHHHHHcCCcEEEEEEEeeCcEEE
Q 009555 460 KKIDCLLFVSRVLDELQLDLHHVAGGHIGDYYS 492 (532)
Q Consensus 460 kR~GlLl~VL~aLEeLgLdVlsAsiS~vg~~vi 492 (532)
+.+|.+.+++++|.+.|+.|.-...++.+-.+.
T Consensus 12 ~~~~~~~~i~~aL~~~~I~v~~i~~g~s~~sis 44 (65)
T cd04918 12 RSSLILERAFHVLYTKGVNVQMISQGASKVNIS 44 (65)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecCccceEE
Confidence 346888899999999999997777665554443
No 125
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=41.16 E-value=77 Score=37.30 Aligned_cols=62 Identities=18% Similarity=0.215 Sum_probs=49.5
Q ss_pred CCceEEEEEeCC-----eEEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEee-CcEEEEEEEEEEc
Q 009555 439 KDTEVDVRIIDD-----EVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHI-GDYYSFLFNTKIY 500 (532)
Q Consensus 439 ~~peVeVriig~-----dV~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~v-g~~vi~tI~aKV~ 500 (532)
+..-|+|....+ .+.|.|...++.|+|.+|+++|-+.+..|++++.... ++.+...|..+|.
T Consensus 610 per~i~v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v~ 677 (701)
T COG0317 610 PERVIDVSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEVK 677 (701)
T ss_pred cceEEEEEecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEEC
Confidence 335677775433 4778889999999999999999999999999998875 5566666777775
No 126
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=40.01 E-value=2e+02 Score=29.45 Aligned_cols=39 Identities=10% Similarity=0.135 Sum_probs=31.6
Q ss_pred CeEEEEEEecCCCCh--HHHHHHHHHHcCCcEEEEEEEeeC
Q 009555 450 DEVTIKLVQRKKIDC--LLFVSRVLDELQLDLHHVAGGHIG 488 (532)
Q Consensus 450 ~dV~IkI~C~kR~Gl--Ll~VL~aLEeLgLdVlsAsiS~vg 488 (532)
..+.++|.|.+..+. ...+++.|++.++.+.+..+...+
T Consensus 141 ~~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~ 181 (225)
T PRK15385 141 KRYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQ 181 (225)
T ss_pred eEEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecC
Confidence 357789999887654 667889999999999999986653
No 127
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=39.30 E-value=96 Score=25.48 Aligned_cols=47 Identities=13% Similarity=0.191 Sum_probs=33.9
Q ss_pred ceEEEEEeCCeEEEEEEecCCCC------hHHHHHHHHHHcCCcEEEEEEEee
Q 009555 441 TEVDVRIIDDEVTIKLVQRKKID------CLLFVSRVLDELQLDLHHVAGGHI 487 (532)
Q Consensus 441 peVeVriig~dV~IkI~C~kR~G------lLl~VL~aLEeLgLdVlsAsiS~v 487 (532)
..|.++..++.+.|.|.+....- -+-.+.++|...|+.+.++++...
T Consensus 27 v~v~l~~~~~~l~v~~~~~~~~~~~~L~~~~~~L~~~L~~~G~~~~~~~v~~~ 79 (85)
T PF02120_consen 27 VEVKLRLQGGNLSVQFTAENPETKELLRQNLPELKERLQAQGLEVVNLSVSQG 79 (85)
T ss_dssp EEEEEEEETTEEEEEEE--SSHHHHHHHHTHHHHHHHHHTTT-EEEEEEEESS
T ss_pred EEEEEEEeCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEEEC
Confidence 46777788999999999976532 234688999999999998877643
No 128
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=37.82 E-value=96 Score=24.88 Aligned_cols=51 Identities=10% Similarity=-0.022 Sum_probs=32.2
Q ss_pred CCChHHHHHHHHHHcCCcEEEEEEEeeCcEEEEEEEEEEccCCccCHHHHHHHHHHHH
Q 009555 461 KIDCLLFVSRVLDELQLDLHHVAGGHIGDYYSFLFNTKIYEGSSVYAGSIANKLIEVM 518 (532)
Q Consensus 461 R~GlLl~VL~aLEeLgLdVlsAsiS~vg~~vi~tI~aKV~eGs~v~ae~IkqaL~eaL 518 (532)
++|.+.+++++|.+.|++|.-...+..+-.+.+.+..+ +.++..++|++.+
T Consensus 14 ~~gv~~ki~~~L~~~~I~v~~i~~~~s~~~is~~V~~~-------~~~~av~~Lh~~f 64 (66)
T cd04915 14 TPGVLARGLAALAEAGIEPIAAHQSMRNVDVQFVVDRD-------DYDNAIKALHAAL 64 (66)
T ss_pred cchHHHHHHHHHHHCCCCEEEEEecCCeeEEEEEEEHH-------HHHHHHHHHHHHH
Confidence 46888999999999999997776655443332222221 3455555555543
No 129
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=37.65 E-value=1.7e+02 Score=21.79 Aligned_cols=25 Identities=8% Similarity=0.125 Sum_probs=21.2
Q ss_pred CCCChHHHHHHHHHHcCCcEEEEEE
Q 009555 460 KKIDCLLFVSRVLDELQLDLHHVAG 484 (532)
Q Consensus 460 kR~GlLl~VL~aLEeLgLdVlsAsi 484 (532)
+.++.+.+++++|.+.++.|...+.
T Consensus 12 ~~~~~~~~i~~~L~~~~i~v~~i~~ 36 (63)
T cd04923 12 SHPGVAAKMFKALAEAGINIEMIST 36 (63)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEc
Confidence 4578899999999999999977764
No 130
>PLN02705 beta-amylase
Probab=36.89 E-value=1.2e+02 Score=35.41 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=19.7
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHhhcc
Q 009555 331 AGKPTKHFATERQRREQLNGKFKALKDL 358 (532)
Q Consensus 331 ~s~~~~H~~aER~RR~klnekf~~LrsL 358 (532)
...++....+||+||.=-..-|.-||..
T Consensus 82 ~~e~e~~~~rer~rrai~~ki~aglr~~ 109 (681)
T PLN02705 82 EKEKERTKLRERHRRAITSRMLAGLRQY 109 (681)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhc
Confidence 4466778889999987666666666654
No 131
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=36.36 E-value=1.7e+02 Score=28.65 Aligned_cols=48 Identities=15% Similarity=0.095 Sum_probs=38.8
Q ss_pred EEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEee---CcEEEEEEEEEE
Q 009555 452 VTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHI---GDYYSFLFNTKI 499 (532)
Q Consensus 452 V~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~v---g~~vi~tI~aKV 499 (532)
+.+.|.-+++||.|++||+=|-+.|..|+++.-+.- ++++-.-|..++
T Consensus 6 itldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~g~r~pV~i~~~~ 56 (170)
T COG2061 6 ITLDIELKDKPGQLLKVLQPLSKTGANIITIIHSRDKKYGPRVPVQIVFEG 56 (170)
T ss_pred EEEEEEecCCCcchhhhhcchhhcCccEEEEEeecCcccCCceeEEEEEEe
Confidence 456677799999999999999999999999877655 677666666554
No 132
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=36.00 E-value=2e+02 Score=25.38 Aligned_cols=64 Identities=14% Similarity=0.090 Sum_probs=46.6
Q ss_pred EEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEee--CcEEEEEEEEEEccCCccCHHHHHHHHHHHHH
Q 009555 452 VTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHI--GDYYSFLFNTKIYEGSSVYAGSIANKLIEVMD 519 (532)
Q Consensus 452 V~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~v--g~~vi~tI~aKV~eGs~v~ae~IkqaL~eaL~ 519 (532)
..+.|..+.+++.|.+||.+.+.-|+-|-..+.+.. ++....-|.+. +....+-+...|.++.+
T Consensus 4 yqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~----s~R~~~lL~~QLeKl~D 69 (86)
T COG3978 4 YQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVD----SDRSVDLLTSQLEKLYD 69 (86)
T ss_pred EEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEc----CCCChHHHHHHHHHHcc
Confidence 346677788999999999999999999999998876 45554333333 33456677666666654
No 133
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=35.86 E-value=10 Score=44.03 Aligned_cols=63 Identities=19% Similarity=0.182 Sum_probs=52.7
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHhhccCCCC-----CCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009555 331 AGKPTKHFATERQRREQLNGKFKALKDLVPNP-----TKNDRASVVGDAIEYIKELLRTVNELKLLVEKKR 396 (532)
Q Consensus 331 ~s~~~~H~~aER~RR~klnekf~~LrsLvP~~-----~K~DKaSIL~dAI~YIk~Lq~~v~~L~~~~e~~r 396 (532)
+-....|+-++|+||-.+.++|..|..|.|.. .+..++|||- +.|+.+|+.-+.+.+..+.++
T Consensus 785 ~~v~a~sih~lrr~~~~~~dq~~sL~alrp~v~~~~~ql~S~tS~L~---dp~~~~eq~ska~~e~~~~kr 852 (856)
T KOG3582|consen 785 GMVSAGSIHALRRTRLNWLDQFCSLPALRPQVLLNLRQLLSSTSILT---DPIKQPEQASKAVTEKIEGKR 852 (856)
T ss_pred ceeecchHHHHHHHHHHHhhccccHHHHHHHHHhhHHHhhhhhhccc---CcccchHHHHHHHHhhhhhhc
Confidence 45667889999999999999999999999954 5678999999 788999988888887665543
No 134
>PRK00907 hypothetical protein; Provisional
Probab=34.52 E-value=1.2e+02 Score=26.73 Aligned_cols=65 Identities=8% Similarity=0.019 Sum_probs=44.9
Q ss_pred EEEEEEecCCCChHHHHHHHHHHcC----CcEEEEEEEeeCcEEEEEEEEEEccCCccCHHHHHHHHHHHHHHhh
Q 009555 452 VTIKLVQRKKIDCLLFVSRVLDELQ----LDLHHVAGGHIGDYYSFLFNTKIYEGSSVYAGSIANKLIEVMDKQY 522 (532)
Q Consensus 452 V~IkI~C~kR~GlLl~VL~aLEeLg----LdVlsAsiS~vg~~vi~tI~aKV~eGs~v~ae~IkqaL~eaL~~~~ 522 (532)
+-|||.-..++++...|+++++.+. ...+...-|..|.++.+++.+.+... +++ ++|.+.|..+.
T Consensus 18 fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~ats~-----eQl-d~iY~~L~~~~ 86 (92)
T PRK00907 18 FELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAESR-----EQY-DAAHQALRDHP 86 (92)
T ss_pred CeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEECCH-----HHH-HHHHHHHhhCC
Confidence 5678888888999999999999774 34445556778888888888887522 222 33555555443
No 135
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=33.55 E-value=2.1e+02 Score=22.97 Aligned_cols=26 Identities=4% Similarity=-0.042 Sum_probs=22.0
Q ss_pred CCCChHHHHHHHHHHcCCcEEEEEEE
Q 009555 460 KKIDCLLFVSRVLDELQLDLHHVAGG 485 (532)
Q Consensus 460 kR~GlLl~VL~aLEeLgLdVlsAsiS 485 (532)
+..|.+.+++++|.+.++.|.-.+.+
T Consensus 13 ~~~~~~~~i~~~L~~~~I~v~~i~~~ 38 (80)
T cd04921 13 GVPGIAARIFSALARAGINVILISQA 38 (80)
T ss_pred CCccHHHHHHHHHHHCCCcEEEEEec
Confidence 46788899999999999999777654
No 136
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=33.41 E-value=1.7e+02 Score=23.81 Aligned_cols=42 Identities=10% Similarity=0.059 Sum_probs=28.8
Q ss_pred EEEEEe---cCCCChHHHHHHHHHHcCCcEEEEEEEeeCcEEEEEEE
Q 009555 453 TIKLVQ---RKKIDCLLFVSRVLDELQLDLHHVAGGHIGDYYSFLFN 496 (532)
Q Consensus 453 ~IkI~C---~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg~~vi~tI~ 496 (532)
.|+|.+ ...+|.+.+|+++|.+.++.|..... .+..+.+++.
T Consensus 3 ~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~~--s~~~is~~v~ 47 (75)
T cd04912 3 LLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIST--SEVSVSLTLD 47 (75)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEEc--CCcEEEEEEE
Confidence 345543 44678999999999999999977753 3344444443
No 137
>PRK14637 hypothetical protein; Provisional
Probab=33.03 E-value=1.6e+02 Score=27.99 Aligned_cols=61 Identities=10% Similarity=0.044 Sum_probs=42.7
Q ss_pred cCCCChHHHHHHHHHHcCCcEEEEEEEeeCcEEEEEEEEEEccCCcc-CHHHHHHHHHHHHH
Q 009555 459 RKKIDCLLFVSRVLDELQLDLHHVAGGHIGDYYSFLFNTKIYEGSSV-YAGSIANKLIEVMD 519 (532)
Q Consensus 459 ~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg~~vi~tI~aKV~eGs~v-~ae~IkqaL~eaL~ 519 (532)
.+.-|....+-.+++++|++++.+.+...++..+..|.+--.+|..+ +++++.+.|-.+|+
T Consensus 5 ~~~~~~~~~v~p~~~~~g~eLvdve~~~~~~~~~lrV~ID~~~gV~iddC~~vSr~Is~~LD 66 (151)
T PRK14637 5 KKDLGYFSECEPVVEGLGCKLVDLSRRVQQAQGRVRAVIYSAGGVGLDDCARVHRILVPRLE 66 (151)
T ss_pred cccccHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 34457788888999999999999999887765444444432344444 66677777766665
No 138
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=31.91 E-value=1.1e+02 Score=29.10 Aligned_cols=53 Identities=23% Similarity=0.259 Sum_probs=37.9
Q ss_pred CcchhhHHHHHHHHHHHHHHhhccCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 009555 335 TKHFATERQRREQLNGKFKALKDLVPNPTKNDRASVVGDAIEYIKELLRTVNELKLLVEKKRCV 398 (532)
Q Consensus 335 ~~H~~aER~RR~klnekf~~LrsLvP~~~K~DKaSIL~dAI~YIk~Lq~~v~~L~~~~e~~r~~ 398 (532)
..-...+|+-|..+.+.-.+++++ |..++=.+|.| |++++.+|+++++++...
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~i----------S~qDeFAkwaK-l~Rk~~kl~~el~~~~~~ 88 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNAI----------SAQDEFAKWAK-LNRKLDKLEEELEKLNKS 88 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTS-----------TTTSHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHcC----------CcHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 344556777788888888888777 33446677777 899999999988776544
No 139
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=31.06 E-value=30 Score=33.62 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHhhccCCCC
Q 009555 340 TERQRREQLNGKFKALKDLVPNP 362 (532)
Q Consensus 340 aER~RR~klnekf~~LrsLvP~~ 362 (532)
.||.|-.++++.+.-|++|+|+.
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgs 51 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGS 51 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCC
Confidence 58899999999999999999976
No 140
>PRK08526 threonine dehydratase; Provisional
Probab=29.70 E-value=2.1e+02 Score=31.12 Aligned_cols=53 Identities=8% Similarity=0.073 Sum_probs=40.7
Q ss_pred eCCeEEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeC-----cEEEEEEEEEEc
Q 009555 448 IDDEVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIG-----DYYSFLFNTKIY 500 (532)
Q Consensus 448 ig~dV~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg-----~~vi~tI~aKV~ 500 (532)
.+..+.+.+.-+.++|.|.+++..+-+.+.+|+.+...... +.+...+.+++.
T Consensus 323 ~~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~ 380 (403)
T PRK08526 323 SYRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETK 380 (403)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeC
Confidence 35678889999999999999999999999999998775432 234444555554
No 141
>PRK11898 prephenate dehydratase; Provisional
Probab=29.03 E-value=3e+02 Score=28.61 Aligned_cols=65 Identities=12% Similarity=0.112 Sum_probs=44.8
Q ss_pred EEEEEecC-CCChHHHHHHHHHHcCCcEEEEEEEeeC-cEEEEEEEEEEccCCccCHHHHHHHHHHHHH
Q 009555 453 TIKLVQRK-KIDCLLFVSRVLDELQLDLHHVAGGHIG-DYYSFLFNTKIYEGSSVYAGSIANKLIEVMD 519 (532)
Q Consensus 453 ~IkI~C~k-R~GlLl~VL~aLEeLgLdVlsAsiS~vg-~~vi~tI~aKV~eGs~v~ae~IkqaL~eaL~ 519 (532)
.|-+...+ ++|.|.++|++|...|+.+++..+-... ...-|.|.+.++ |. .+...+++.|.++-.
T Consensus 198 slif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~e-g~-~~~~~~~~al~~L~~ 264 (283)
T PRK11898 198 SLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVE-GH-IDDVLVAEALKELEA 264 (283)
T ss_pred EEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEE-cc-CCCHHHHHHHHHHHH
Confidence 34455555 5999999999999999999999987654 334466677764 43 333456666655544
No 142
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=28.93 E-value=2.9e+02 Score=29.20 Aligned_cols=67 Identities=15% Similarity=0.168 Sum_probs=49.1
Q ss_pred EEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeC-cEEEEEEEEEEccCCccCHHHHHHHHHHHHHHh
Q 009555 453 TIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIG-DYYSFLFNTKIYEGSSVYAGSIANKLIEVMDKQ 521 (532)
Q Consensus 453 ~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg-~~vi~tI~aKV~eGs~v~ae~IkqaL~eaL~~~ 521 (532)
.|-+.-++++|.|.++|.+|...|++.....+=... ...-|.|.+.++ |..- -..|+++|.++-...
T Consensus 196 sl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~e-g~~~-~~~v~~AL~el~~~t 263 (279)
T COG0077 196 SLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIE-GHID-DPLVKEALEELKEIT 263 (279)
T ss_pred EEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEe-cCcC-cHhHHHHHHHHHhhe
Confidence 344444699999999999999999999999887654 566677888875 4332 367777777665443
No 143
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.63 E-value=2.4e+02 Score=23.87 Aligned_cols=42 Identities=14% Similarity=0.163 Sum_probs=29.6
Q ss_pred EEEEEe---cCCCChHHHHHHHHHHcCCcEEEEEEEeeCcEEEEEEE
Q 009555 453 TIKLVQ---RKKIDCLLFVSRVLDELQLDLHHVAGGHIGDYYSFLFN 496 (532)
Q Consensus 453 ~IkI~C---~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg~~vi~tI~ 496 (532)
+|+|.. ...+|.+.+|+++|++.|+.|-.... ..+.+.+++.
T Consensus 3 ~i~i~~~~~~~~~g~~a~IF~~La~~~InVDmI~q--s~~sISftV~ 47 (78)
T cd04933 3 MLDITSTRMLGQYGFLAKVFSIFETLGISVDVVAT--SEVSISLTLD 47 (78)
T ss_pred EEEEEcCCCCCccCHHHHHHHHHHHcCCcEEEEEe--cCCEEEEEEE
Confidence 345544 45688999999999999999988854 2244444444
No 144
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=27.96 E-value=58 Score=23.77 Aligned_cols=16 Identities=50% Similarity=0.841 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHhhc
Q 009555 342 RQRREQLNGKFKALKD 357 (532)
Q Consensus 342 R~RR~klnekf~~Lrs 357 (532)
|+||+.++.++..||+
T Consensus 14 rrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 14 RRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHhc
Confidence 7889999999999986
No 145
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.75 E-value=3.5e+02 Score=22.38 Aligned_cols=56 Identities=9% Similarity=0.107 Sum_probs=35.1
Q ss_pred cCCCChHHHHHHHHHHcCCcEEEEEEEeeCcEEEEEEEEEEccCCccCHHHHHHHHHHHHHH
Q 009555 459 RKKIDCLLFVSRVLDELQLDLHHVAGGHIGDYYSFLFNTKIYEGSSVYAGSIANKLIEVMDK 520 (532)
Q Consensus 459 ~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg~~vi~tI~aKV~eGs~v~ae~IkqaL~eaL~~ 520 (532)
...+|++.+|+.+|.+.|+.|-....+ ...+.+++... + ....++++++|.+-+++
T Consensus 12 ~~~~g~~~~IF~~La~~~I~VDmI~~s--~~~iSftv~~~--d--~~~~~~~~~~l~~~l~~ 67 (75)
T cd04932 12 LHAQGFLAKVFGILAKHNISVDLITTS--EISVALTLDNT--G--STSDQLLTQALLKELSQ 67 (75)
T ss_pred CCCcCHHHHHHHHHHHcCCcEEEEeec--CCEEEEEEecc--c--cchhHHHHHHHHHHHHh
Confidence 456899999999999999999888542 23444444321 1 11113455566665555
No 146
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=27.73 E-value=3.5e+02 Score=29.48 Aligned_cols=64 Identities=13% Similarity=0.179 Sum_probs=47.8
Q ss_pred EEecCCCChHHHHHHHHHHcCCcEEEEEEEeeC-cEEEEEEEEEEccCCccCHHHHHHHHHHHHHHh
Q 009555 456 LVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIG-DYYSFLFNTKIYEGSSVYAGSIANKLIEVMDKQ 521 (532)
Q Consensus 456 I~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg-~~vi~tI~aKV~eGs~v~ae~IkqaL~eaL~~~ 521 (532)
+.-++++|.|.++|.+|...|+.++...+=... ...-|.|.+.+. |. .....++++|.++-..+
T Consensus 302 ~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~e-g~-~~d~~~~~aL~~l~~~~ 366 (386)
T PRK10622 302 MATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQ-AN-LRSAEMQKALKELGEIT 366 (386)
T ss_pred EEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEe-CC-CCCHHHHHHHHHHHHhc
Confidence 333689999999999999999999999987654 457778888875 43 33356777777665544
No 147
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=26.87 E-value=2.5e+02 Score=31.41 Aligned_cols=61 Identities=8% Similarity=0.123 Sum_probs=41.6
Q ss_pred EEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeC-cEEEEEEEEEEccCCccCHHHHHHHHHHH
Q 009555 454 IKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIG-DYYSFLFNTKIYEGSSVYAGSIANKLIEV 517 (532)
Q Consensus 454 IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg-~~vi~tI~aKV~eGs~v~ae~IkqaL~ea 517 (532)
|-+.-++++|.|.+||++++..|+.+++..+-... ...-|.|.+.++ |.. . ..+.+.|.++
T Consensus 19 LiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~e-g~~-~-~~v~~aL~~L 80 (436)
T TIGR01268 19 LIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFD-EAS-D-RKLEGVIEHL 80 (436)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEe-cCc-c-HHHHHHHHHH
Confidence 44444778999999999999999999999876543 334466777764 332 2 4454444443
No 148
>PLN02317 arogenate dehydratase
Probab=25.69 E-value=3.4e+02 Score=29.86 Aligned_cols=57 Identities=14% Similarity=0.174 Sum_probs=41.0
Q ss_pred cCCCChHHHHHHHHHHcCCcEEEEEEEeeCcE---------------EEEEEEEEEccCCccCHHHHHHHHHHH
Q 009555 459 RKKIDCLLFVSRVLDELQLDLHHVAGGHIGDY---------------YSFLFNTKIYEGSSVYAGSIANKLIEV 517 (532)
Q Consensus 459 ~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg~~---------------vi~tI~aKV~eGs~v~ae~IkqaL~ea 517 (532)
+.++|.|.++|.+|...++.+++..+-..... .-|.|.+.++ +.. .-..++++|.++
T Consensus 291 ~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~e-g~~-~d~~~~~aL~~L 362 (382)
T PLN02317 291 EEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFE-ASM-ADPRAQNALAHL 362 (382)
T ss_pred CCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEEEEE-cCc-CCHHHHHHHHHH
Confidence 67899999999999999999999988765433 5577777764 432 224455555444
No 149
>PRK02047 hypothetical protein; Provisional
Probab=25.56 E-value=2.1e+02 Score=24.99 Aligned_cols=65 Identities=9% Similarity=0.134 Sum_probs=44.5
Q ss_pred EEEEEEecCCCChHHHHHHHHHHc--C--CcEEEEEEEeeCcEEEEEEEEEEccCCccCHHHHHHHHHHHHHHhh
Q 009555 452 VTIKLVQRKKIDCLLFVSRVLDEL--Q--LDLHHVAGGHIGDYYSFLFNTKIYEGSSVYAGSIANKLIEVMDKQY 522 (532)
Q Consensus 452 V~IkI~C~kR~GlLl~VL~aLEeL--g--LdVlsAsiS~vg~~vi~tI~aKV~eGs~v~ae~IkqaL~eaL~~~~ 522 (532)
..+||.-...+++...|.++++.. + ...+...-|..|-++.+++.+.|.+. ++ ..+|.+.|.++.
T Consensus 17 ~~~KvIG~~~~~~~~~v~~iv~~~~~~~~~~~i~~k~Ss~GkY~Svtv~v~v~s~-----eq-~~~iY~~L~~~~ 85 (91)
T PRK02047 17 FPIKVMGKAHPEFADTIFKVVSVHDPEFDLEKIEERPSSGGNYTGLTITVRATSR-----EQ-LDNIYRALTGHP 85 (91)
T ss_pred CeEEEEEeCcHhHHHHHHHHHHHhCCCCccCceEEccCCCCeEEEEEEEEEECCH-----HH-HHHHHHHHhhCC
Confidence 556777777778888888888876 4 33466677888889999999988622 22 234555555543
No 150
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=25.46 E-value=1e+02 Score=36.17 Aligned_cols=60 Identities=15% Similarity=0.166 Sum_probs=49.4
Q ss_pred EEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeCcEEEEEEEEEEccCCccCHHHHHHHHHHHHH
Q 009555 452 VTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIGDYYSFLFNTKIYEGSSVYAGSIANKLIEVMD 519 (532)
Q Consensus 452 V~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg~~vi~tI~aKV~eGs~v~ae~IkqaL~eaL~ 519 (532)
..++|....|+|+|-.|+.+|. ||.-+.+++.|..++..|.++ +| ..-..|.+.|..++-
T Consensus 632 ~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~--~~--~~r~~~~~~~~~~~~ 691 (693)
T PRK00227 632 NILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALK--PG--FDRATVERDVTRVLA 691 (693)
T ss_pred cEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEec--Cc--ccHHHHHHHHHHHHh
Confidence 6788999999999999999999 899999999999888888777 33 245677777777653
No 151
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.19 E-value=3.1e+02 Score=21.66 Aligned_cols=23 Identities=13% Similarity=-0.005 Sum_probs=18.3
Q ss_pred CCCChHHHHHHHHHHcCCcEEEE
Q 009555 460 KKIDCLLFVSRVLDELQLDLHHV 482 (532)
Q Consensus 460 kR~GlLl~VL~aLEeLgLdVlsA 482 (532)
..+|.+.+++++|.+.++.++..
T Consensus 12 ~~~gv~~~~~~~L~~~~i~~i~~ 34 (63)
T cd04920 12 SLLHKLGPALEVFGKKPVHLVSQ 34 (63)
T ss_pred cCccHHHHHHHHHhcCCceEEEE
Confidence 56789999999999987766444
No 152
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.15 E-value=2.8e+02 Score=22.94 Aligned_cols=36 Identities=8% Similarity=0.055 Sum_probs=26.5
Q ss_pred cCCCChHHHHHHHHHHcCCcEEEEEEEeeCcEEEEEEE
Q 009555 459 RKKIDCLLFVSRVLDELQLDLHHVAGGHIGDYYSFLFN 496 (532)
Q Consensus 459 ~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg~~vi~tI~ 496 (532)
...+|++.+|+++|++.++.|-.... ..+.+.+++.
T Consensus 12 ~~~~g~~~~IF~~La~~~I~vDmI~~--s~~~isftv~ 47 (75)
T cd04935 12 WQQVGFLADVFAPFKKHGVSVDLVST--SETNVTVSLD 47 (75)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEEEe--CCCEEEEEEe
Confidence 35678999999999999999988854 2244444444
No 153
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=24.90 E-value=1.3e+02 Score=25.40 Aligned_cols=24 Identities=29% Similarity=0.225 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 009555 371 VGDAIEYIKELLRTVNELKLLVEK 394 (532)
Q Consensus 371 L~dAI~YIk~Lq~~v~~L~~~~e~ 394 (532)
+..||+-|.-||.++++|+.+...
T Consensus 13 i~~aveti~~Lq~e~eeLke~n~~ 36 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKNNE 36 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 678999999999999999986443
No 154
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=24.81 E-value=2.2e+02 Score=26.99 Aligned_cols=40 Identities=20% Similarity=0.233 Sum_probs=34.0
Q ss_pred EEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeCcEEE
Q 009555 453 TIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIGDYYS 492 (532)
Q Consensus 453 ~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg~~vi 492 (532)
.|.|.-++++|-|..++.+|.+.|+.+-...+.-.+++-+
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGI 44 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGI 44 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcce
Confidence 3778889999999999999999999998888877766433
No 155
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=24.77 E-value=2.4e+02 Score=27.93 Aligned_cols=71 Identities=8% Similarity=0.140 Sum_probs=47.7
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEee--CcEEEEEEEEEEccC--CccCHHHHHHHHHHHHHH
Q 009555 450 DEVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHI--GDYYSFLFNTKIYEG--SSVYAGSIANKLIEVMDK 520 (532)
Q Consensus 450 ~dV~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~v--g~~vi~tI~aKV~eG--s~v~ae~IkqaL~eaL~~ 520 (532)
..|.+++...+|+|++-++...|..+|+.+.+...-+. .+.---.|++.+.-. ..+..++|.+.+.++-+.
T Consensus 91 ~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~~~i~~l~~~f~al~~~ 165 (176)
T COG2716 91 APVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPANLSISALRDAFEALCDE 165 (176)
T ss_pred ceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCCcCcHHHHHHHHHHHHHh
Confidence 34778889999999999999999999988876654332 221112234433222 446788888887766543
No 156
>PRK06291 aspartate kinase; Provisional
Probab=24.60 E-value=3.4e+02 Score=30.01 Aligned_cols=43 Identities=12% Similarity=0.101 Sum_probs=32.9
Q ss_pred EEeCCeEEEEEEec---CCCChHHHHHHHHHHcCCcEEEEEEEeeC
Q 009555 446 RIIDDEVTIKLVQR---KKIDCLLFVSRVLDELQLDLHHVAGGHIG 488 (532)
Q Consensus 446 riig~dV~IkI~C~---kR~GlLl~VL~aLEeLgLdVlsAsiS~vg 488 (532)
...++-+.|+|... ..+|++.+|+.+|.+.|+.|....-++..
T Consensus 316 t~~~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse 361 (465)
T PRK06291 316 TLIKNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSE 361 (465)
T ss_pred EeeCCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCC
Confidence 34566778888774 46789999999999999999877544333
No 157
>PRK10222 PTS system L-ascorbate-specific transporter subunit IIB; Provisional
Probab=24.59 E-value=2.7e+02 Score=23.79 Aligned_cols=57 Identities=16% Similarity=0.213 Sum_probs=37.7
Q ss_pred HHHHHHHHcCC--cEEEEEEEeeCcE-----EEEEE-E--EEE---------ccCCccCHHHHHHHHHHHHHHhhh
Q 009555 467 FVSRVLDELQL--DLHHVAGGHIGDY-----YSFLF-N--TKI---------YEGSSVYAGSIANKLIEVMDKQYA 523 (532)
Q Consensus 467 ~VL~aLEeLgL--dVlsAsiS~vg~~-----vi~tI-~--aKV---------~eGs~v~ae~IkqaL~eaL~~~~~ 523 (532)
.|=++|+++|+ +|.++.++...+. ++++. . -++ .-+.-++.++|+++|.+++..++.
T Consensus 6 kIk~~L~e~Gi~~~ve~~diss~~~~~~~aDiiVtt~~l~~~~~~~g~~~l~gI~N~~d~~ei~~~~~~~~~~~~~ 81 (85)
T PRK10222 6 KVDQFLTQSNIDHTVNSCAVGEYKSELSGADIIIASTHIAGEITVTGNKYVVGVRNMLSPADFGPKLLEVIKEHFP 81 (85)
T ss_pred HHHHHHHHcCCCeEEEEeehhhcccCCCCCCEEEECccchhhhccCCCceEEEEecccCHHHHHHHHHHHHHHhCh
Confidence 57789999999 7888877655443 22221 1 011 112446899999999999988654
No 158
>PRK00341 hypothetical protein; Provisional
Probab=24.51 E-value=2e+02 Score=25.19 Aligned_cols=48 Identities=15% Similarity=0.176 Sum_probs=35.4
Q ss_pred EEEEEEecCCCChHHHHHHHHHHcCCcE----EEEEEEeeCcEEEEEEEEEEc
Q 009555 452 VTIKLVQRKKIDCLLFVSRVLDELQLDL----HHVAGGHIGDYYSFLFNTKIY 500 (532)
Q Consensus 452 V~IkI~C~kR~GlLl~VL~aLEeLgLdV----lsAsiS~vg~~vi~tI~aKV~ 500 (532)
.-|||.-...+++...|+++++... ++ +...-|..|-++.+++.+.+.
T Consensus 18 ~~~KViG~~~~~~~~~V~~iv~~~~-~~~~~~~~~k~Ss~GkY~S~tv~i~~~ 69 (91)
T PRK00341 18 YPIKVIGDTGVGFKDLVIEILQKHA-DVDLSTLAERQSSNGKYTTVQLHIVAT 69 (91)
T ss_pred ccEEEEEcCchhHHHHHHHHHHHhC-CCcccceeeccCCCCEEEEEEEEEEEC
Confidence 4467777778888888999998664 43 333556777788889999886
No 159
>PRK14639 hypothetical protein; Provisional
Probab=24.28 E-value=2.1e+02 Score=26.88 Aligned_cols=53 Identities=8% Similarity=0.001 Sum_probs=38.8
Q ss_pred HHHHHHHcCCcEEEEEEEeeCcEEEEEEEEEEccCCcc-CHHHHHHHHHHHHHH
Q 009555 468 VSRVLDELQLDLHHVAGGHIGDYYSFLFNTKIYEGSSV-YAGSIANKLIEVMDK 520 (532)
Q Consensus 468 VL~aLEeLgLdVlsAsiS~vg~~vi~tI~aKV~eGs~v-~ae~IkqaL~eaL~~ 520 (532)
+-.+++++|+++..+.+...++..+..|.+.-.+|..+ +++.+.++|-++|+.
T Consensus 3 ~ep~~~~~G~eLvdve~~~~~~~~~lrV~Id~~~gv~iddC~~vSr~is~~LD~ 56 (140)
T PRK14639 3 LEALCKECGVSFYDDELVSENGRKIYRVYITKEGGVNLDDCERLSELLSPIFDV 56 (140)
T ss_pred hhHhHHhCCCEEEEEEEEecCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHHhcc
Confidence 44688999999999999988776555555543345444 777788888877774
No 160
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=23.84 E-value=3.3e+02 Score=22.50 Aligned_cols=41 Identities=15% Similarity=0.160 Sum_probs=28.8
Q ss_pred EEEEe---cCCCChHHHHHHHHHHcCCcEEEEEEEeeCcEEEEEEE
Q 009555 454 IKLVQ---RKKIDCLLFVSRVLDELQLDLHHVAGGHIGDYYSFLFN 496 (532)
Q Consensus 454 IkI~C---~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg~~vi~tI~ 496 (532)
|+|.+ ...+|++.+|+++|.+.|+.|-.... ..+.+.+++.
T Consensus 4 I~i~~~~m~~~~g~~~~If~~la~~~I~vd~I~~--s~~~isftv~ 47 (73)
T cd04934 4 INIHSNKKSLSHGFLARIFAILDKYRLSVDLIST--SEVHVSMALH 47 (73)
T ss_pred EEEEcccCccccCHHHHHHHHHHHcCCcEEEEEe--CCCEEEEEEe
Confidence 44444 34679999999999999999988864 2244444444
No 161
>PRK06291 aspartate kinase; Provisional
Probab=23.41 E-value=3.5e+02 Score=29.96 Aligned_cols=46 Identities=13% Similarity=0.079 Sum_probs=32.8
Q ss_pred EeCCeEEEEEEec---CCCChHHHHHHHHHHcCCcEEEEEEEeeCcEEE
Q 009555 447 IIDDEVTIKLVQR---KKIDCLLFVSRVLDELQLDLHHVAGGHIGDYYS 492 (532)
Q Consensus 447 iig~dV~IkI~C~---kR~GlLl~VL~aLEeLgLdVlsAsiS~vg~~vi 492 (532)
+.++-..|.|... .++|.+.+++.+|.+.++.|+-.+-++.+-.+.
T Consensus 394 ~~~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~isqgsSe~~Is 442 (465)
T PRK06291 394 FDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQGSSEVNIS 442 (465)
T ss_pred EeCCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEEeccccCeEE
Confidence 3444555666653 477899999999999999998776555554333
No 162
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=23.21 E-value=1.6e+02 Score=24.36 Aligned_cols=28 Identities=29% Similarity=0.298 Sum_probs=24.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009555 369 SVVGDAIEYIKELLRTVNELKLLVEKKR 396 (532)
Q Consensus 369 SIL~dAI~YIk~Lq~~v~~L~~~~e~~r 396 (532)
+-|.+|=...+.|+.+|+.|++++++++
T Consensus 32 ~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 32 SKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3489999999999999999999998764
No 163
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.74 E-value=1.4e+02 Score=25.57 Aligned_cols=24 Identities=33% Similarity=0.295 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 009555 371 VGDAIEYIKELLRTVNELKLLVEK 394 (532)
Q Consensus 371 L~dAI~YIk~Lq~~v~~L~~~~e~ 394 (532)
+..||+-|.-||-+|++|+.+...
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~ 36 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNS 36 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhH
Confidence 678999999999999999976543
No 164
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=22.48 E-value=3.3e+02 Score=20.21 Aligned_cols=25 Identities=8% Similarity=0.094 Sum_probs=21.3
Q ss_pred CCCChHHHHHHHHHHcCCcEEEEEE
Q 009555 460 KKIDCLLFVSRVLDELQLDLHHVAG 484 (532)
Q Consensus 460 kR~GlLl~VL~aLEeLgLdVlsAsi 484 (532)
+.++.+.+++++|.+.++.|.-.+.
T Consensus 12 ~~~~~~~~i~~~L~~~~i~v~~i~~ 36 (63)
T cd04936 12 SHPGVAAKMFEALAEAGINIEMIST 36 (63)
T ss_pred CCccHHHHHHHHHHHCCCcEEEEEc
Confidence 4578899999999999999977763
No 165
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=22.19 E-value=94 Score=26.33 Aligned_cols=63 Identities=16% Similarity=0.278 Sum_probs=43.2
Q ss_pred EEEEecC-CCChHHHHHHHHHHcCCcEEEEEEEeeCcEE---------EEEEEEEEccCCccCHHHHHHHHHHHHH
Q 009555 454 IKLVQRK-KIDCLLFVSRVLDELQLDLHHVAGGHIGDYY---------SFLFNTKIYEGSSVYAGSIANKLIEVMD 519 (532)
Q Consensus 454 IkI~C~k-R~GlLl~VL~aLEeLgLdVlsAsiS~vg~~v---------i~tI~aKV~eGs~v~ae~IkqaL~eaL~ 519 (532)
|.|.-++ +.|.+..|.++|-++|+.|...+- ..+++ .+.+...|. +...+.++++.+|.++-.
T Consensus 2 vtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~--l~~~~~~~~~~~~~~~~~e~~v~-~~~~~~~~lr~~L~~la~ 74 (84)
T cd04871 2 VTLLGRPLTAEQLAAVTRVVADQGLNIDRIRR--LSGRVPLEEQDDSPKACVEFSVR-GQPADLEALRAALLELAS 74 (84)
T ss_pred EEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHH--hhccccccccCCCCcEEEEEEEe-CCCCCHHHHHHHHHHHhc
Confidence 3444555 679999999999999999887764 22222 334555555 444788999998886543
No 166
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=22.10 E-value=4.4e+02 Score=28.17 Aligned_cols=41 Identities=10% Similarity=0.120 Sum_probs=32.8
Q ss_pred EEEeCCeEEEEEEe---cCCCChHHHHHHHHHHcCCcEEEEEEE
Q 009555 445 VRIIDDEVTIKLVQ---RKKIDCLLFVSRVLDELQLDLHHVAGG 485 (532)
Q Consensus 445 Vriig~dV~IkI~C---~kR~GlLl~VL~aLEeLgLdVlsAsiS 485 (532)
|...++-..|.|.. ..++|.+.+|+++|.+.++.|.....+
T Consensus 254 I~~~~~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~ 297 (401)
T TIGR00656 254 IALRKNVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQT 297 (401)
T ss_pred EEEECCEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcC
Confidence 34556777888884 567899999999999999999877654
No 167
>PF07941 K_channel_TID: Potassium channel Kv1.4 tandem inactivation domain; InterPro: IPR012897 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The first Kv1 sequence (also known as Shaker) was found in Drosophila melanogaster (Fruit fly). Several vertebrate potassium channels with similar amino acid sequences were subsequently found and, together with the D. melanogaster Shaker channel, now constitute the Kv1 family. The family consists of at least 6 genes (Kv1.1, Kv1.2, Kv1.3, Kv1.4, Kv1.5 and Kv1.6) which each play distinct physiological roles. A conserved motif found towards the C terminus of these channels is required for efficient processing and surface expression []. Variations in this motif account for the differences in cell surface expression and localisation between family members. These channels are mostly expressed in the brain, but can also be found in non-excitable cells, such as lymphocytes []. This entry features the tandem inactivation domain found at the N terminus of the Kv1.4 potassium channel. It is composed of two subdomains. Inactivation domain 1 (ID1, residues 1-38) consists of a flexible N terminus anchored at a 5-turn helix, and is thought to work by occluding the ion pathway, as is the case with a classical ball domain. Inactivation domain 2 (ID2, residues 40-50) is a 2.5 turn helix with a high proportion of hydrophobic residues that probably serves to attach ID1 to the cytoplasmic face of the channel. In this way, it can promote rapid access of ID1 to the receptor site in the open channel. ID1 and ID2 function together to bring about fast inactivation of the Kv1.4 channel, which is important for the role of the channel in short-term plasticity []. ; GO: 0005249 voltage-gated potassium channel activity, 0030955 potassium ion binding, 0006813 potassium ion transport, 0016021 integral to membrane; PDB: 1KN7_A 1ZTO_A.
Probab=22.00 E-value=56 Score=27.59 Aligned_cols=14 Identities=57% Similarity=0.734 Sum_probs=8.3
Q ss_pred hHHHHHHHhcCCcc
Q 009555 3 ERERERERQRGSRS 16 (532)
Q Consensus 3 ~~~~~~~~~~~~~~ 16 (532)
.|.|||||++-||.
T Consensus 25 ARARERER~a~sra 38 (75)
T PF07941_consen 25 ARARERERLAQSRA 38 (75)
T ss_dssp HHHHHHHHHTTSST
T ss_pred HHHHHHHHHHHHHH
Confidence 35566666666654
No 168
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=20.93 E-value=3.6e+02 Score=30.48 Aligned_cols=48 Identities=8% Similarity=0.092 Sum_probs=35.7
Q ss_pred EEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeCc-EEE-EEEEEEEc
Q 009555 453 TIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIGD-YYS-FLFNTKIY 500 (532)
Q Consensus 453 ~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg~-~vi-~tI~aKV~ 500 (532)
.|-+.-++++|.|.++|++++..|+.+++..+-.... ..- |.|-+.++
T Consensus 33 SLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~E 82 (464)
T TIGR01270 33 SIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVE 82 (464)
T ss_pred EEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEE
Confidence 3444457789999999999999999999999866542 233 55666654
No 169
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=20.74 E-value=1.8e+02 Score=23.29 Aligned_cols=35 Identities=14% Similarity=0.166 Sum_probs=27.3
Q ss_pred CCeEEEEEEec----CCCChHHHHHHHHHHcCCcEEEEE
Q 009555 449 DDEVTIKLVQR----KKIDCLLFVSRVLDELQLDLHHVA 483 (532)
Q Consensus 449 g~dV~IkI~C~----kR~GlLl~VL~aLEeLgLdVlsAs 483 (532)
++-..|+|... ..+|.+.++..+|-+.|+.|..++
T Consensus 4 ~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 4 EDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp SEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred CCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence 34456777775 368999999999999999998887
No 170
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=20.36 E-value=4.8e+02 Score=27.88 Aligned_cols=34 Identities=9% Similarity=0.100 Sum_probs=25.5
Q ss_pred CeEEEEEEe---cCCCChHHHHHHHHHHcCCcEEEEE
Q 009555 450 DEVTIKLVQ---RKKIDCLLFVSRVLDELQLDLHHVA 483 (532)
Q Consensus 450 ~dV~IkI~C---~kR~GlLl~VL~aLEeLgLdVlsAs 483 (532)
+-..|.|.. ..++|.+.+++++|.+.|+.|+...
T Consensus 336 ~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i~ 372 (401)
T TIGR00656 336 GLAKVSIVGAGMVGAPGVASEIFSALEEKNINILMIG 372 (401)
T ss_pred CeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE
Confidence 334444444 3578999999999999999998543
No 171
>PRK04998 hypothetical protein; Provisional
Probab=20.08 E-value=4e+02 Score=22.91 Aligned_cols=65 Identities=17% Similarity=0.067 Sum_probs=43.2
Q ss_pred EEEEEEecCCCChHHHHHHHHHHcC--CcEEEEEEEeeCcEEEEEEEEEEccCCccCHHHHHHHHHHHHHHhh
Q 009555 452 VTIKLVQRKKIDCLLFVSRVLDELQ--LDLHHVAGGHIGDYYSFLFNTKIYEGSSVYAGSIANKLIEVMDKQY 522 (532)
Q Consensus 452 V~IkI~C~kR~GlLl~VL~aLEeLg--LdVlsAsiS~vg~~vi~tI~aKV~eGs~v~ae~IkqaL~eaL~~~~ 522 (532)
..+||.-...+++...|..+++... .+.+...-|..|-++.+++.+.|.. .+-..+|.++|.++.
T Consensus 16 ~~~Kvig~~~~~~~~~v~~v~~~~~~~~~~~~~r~S~~GkY~Svtv~v~v~s------~eq~~~iY~~L~~~~ 82 (88)
T PRK04998 16 FTYKVMGLARPELVDQVVEVVQRHAPGDYTPTVKPSSKGNYHSVSITITATS------IEQVETLYEELAKIE 82 (88)
T ss_pred ceEEEEEeCcHhHHHHHHHHHHHhCCCCCCceEccCCCCEEEEEEEEEEECC------HHHHHHHHHHHhcCC
Confidence 4466666667788888999998762 2335566677888999999988862 222334555555543
Done!