Query 009555
Match_columns 532
No_of_seqs 206 out of 1124
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 07:49:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009555.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009555hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.5 6.8E-15 2.3E-19 123.2 5.8 67 333-399 6-73 (82)
2 1nkp_B MAX protein, MYC proto- 99.4 2.4E-13 8.2E-18 113.5 5.8 66 333-398 2-69 (83)
3 1hlo_A Protein (transcription 99.4 1.9E-13 6.5E-18 113.6 4.9 64 333-396 12-77 (80)
4 1an4_A Protein (upstream stimu 99.4 1.6E-13 5.5E-18 109.7 3.2 55 331-385 3-63 (65)
5 1a0a_A BHLH, protein (phosphat 99.3 1.3E-13 4.5E-18 110.4 1.4 54 333-386 2-62 (63)
6 4ati_A MITF, microphthalmia-as 99.3 1.1E-12 3.8E-17 116.8 7.0 62 331-392 25-90 (118)
7 1nkp_A C-MYC, MYC proto-oncoge 99.3 8.6E-13 3E-17 112.0 5.6 64 333-396 6-72 (88)
8 4h10_B Circadian locomoter out 99.3 6.7E-13 2.3E-17 108.9 4.0 58 332-389 7-65 (71)
9 1nlw_A MAD protein, MAX dimeri 99.3 6.7E-12 2.3E-16 104.9 7.3 64 334-397 2-68 (80)
10 4h10_A ARYL hydrocarbon recept 99.2 1.7E-12 5.9E-17 106.9 0.9 51 333-383 9-63 (73)
11 3u5v_A Protein MAX, transcript 99.1 1.3E-11 4.6E-16 102.3 3.0 58 332-389 4-65 (76)
12 2ql2_B Neurod1, neurogenic dif 98.8 2.4E-09 8.2E-14 85.0 3.7 54 333-386 2-58 (60)
13 1mdy_A Protein (MYOD BHLH doma 98.8 2E-09 6.7E-14 87.6 3.0 54 332-385 11-66 (68)
14 4f3l_A Mclock, circadian locom 98.7 7.2E-09 2.5E-13 105.6 5.5 54 331-384 10-64 (361)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.5 3.2E-08 1.1E-12 102.1 2.6 53 332-384 12-68 (387)
16 2lfh_A DNA-binding protein inh 98.3 1.8E-07 6E-12 76.2 1.4 46 338-383 19-67 (68)
17 4ath_A MITF, microphthalmia-as 98.2 1.9E-06 6.5E-11 72.6 6.3 49 345-393 4-56 (83)
18 4aya_A DNA-binding protein inh 97.4 0.00019 6.4E-09 62.2 5.5 47 340-386 32-81 (97)
19 1zpv_A ACT domain protein; str 97.0 0.011 3.6E-07 48.1 11.8 69 451-521 5-73 (91)
20 1u8s_A Glycine cleavage system 96.0 0.039 1.3E-06 51.1 10.5 68 451-521 6-73 (192)
21 2nyi_A Unknown protein; protei 95.1 0.11 3.8E-06 48.6 10.3 70 451-523 93-168 (195)
22 1u8s_A Glycine cleavage system 95.1 0.14 4.9E-06 47.3 10.8 70 451-522 93-170 (192)
23 2nyi_A Unknown protein; protei 95.0 0.12 4.2E-06 48.3 10.0 50 451-500 5-54 (195)
24 2ko1_A CTR148A, GTP pyrophosph 94.7 0.1 3.4E-06 41.5 7.4 50 451-500 5-54 (88)
25 3o1l_A Formyltetrahydrofolate 90.0 2.2 7.4E-05 43.2 11.5 71 451-522 22-94 (302)
26 3n0v_A Formyltetrahydrofolate 89.8 1.4 4.7E-05 44.3 9.9 69 451-521 8-78 (286)
27 3p96_A Phosphoserine phosphata 89.8 0.9 3.1E-05 46.4 8.7 70 451-521 12-81 (415)
28 2jhe_A Transcription regulator 89.4 0.74 2.5E-05 40.4 6.8 36 453-488 2-37 (190)
29 3obi_A Formyltetrahydrofolate 89.3 2.3 7.7E-05 42.7 11.0 71 451-522 6-78 (288)
30 3lou_A Formyltetrahydrofolate 87.5 3.1 0.00011 41.8 10.6 73 450-522 9-84 (292)
31 2f1f_A Acetolactate synthase i 85.6 0.91 3.1E-05 42.2 5.2 63 452-517 4-68 (164)
32 2pc6_A Probable acetolactate s 82.7 1.2 4.1E-05 41.5 4.6 63 452-517 5-69 (165)
33 3nrb_A Formyltetrahydrofolate 82.3 4.1 0.00014 40.8 8.7 68 450-520 6-75 (287)
34 1y7p_A Hypothetical protein AF 80.4 3.4 0.00012 40.4 7.1 61 451-516 4-69 (223)
35 2fgc_A Acetolactate synthase, 73.5 3.8 0.00013 39.2 5.2 64 452-518 30-95 (193)
36 2f06_A Conserved hypothetical 57.3 50 0.0017 28.5 8.8 56 454-516 75-130 (144)
37 2re1_A Aspartokinase, alpha an 47.7 64 0.0022 28.9 8.2 39 445-483 97-138 (167)
38 3byp_A CZRB protein; membrane 43.4 1.2E+02 0.0042 24.1 8.8 58 465-522 12-74 (94)
39 2dt9_A Aspartokinase; protein- 42.4 1.1E+02 0.0037 27.3 8.8 54 445-498 10-67 (167)
40 1rwu_A Hypothetical UPF0250 pr 41.5 53 0.0018 28.5 6.2 49 451-500 36-87 (109)
41 2wt7_A Proto-oncogene protein 40.1 77 0.0026 24.6 6.4 44 341-397 1-44 (63)
42 3he4_B Synzip5; heterodimeric 38.6 45 0.0015 24.4 4.4 25 371-395 5-29 (46)
43 2dt9_A Aspartokinase; protein- 35.6 1.1E+02 0.0037 27.3 7.6 40 444-483 88-130 (167)
44 2dtj_A Aspartokinase; protein- 35.5 1.5E+02 0.005 26.8 8.6 67 444-519 88-157 (178)
45 2qmw_A PDT, prephenate dehydra 33.5 87 0.003 31.0 7.2 66 452-520 187-256 (267)
46 2dtj_A Aspartokinase; protein- 33.0 1.4E+02 0.0048 27.0 8.0 40 446-485 10-50 (178)
47 2f06_A Conserved hypothetical 32.3 2.3E+02 0.0078 24.2 9.0 35 453-487 8-42 (144)
48 2qmx_A Prephenate dehydratase; 31.9 1.3E+02 0.0043 30.1 8.1 64 453-518 202-266 (283)
49 2re1_A Aspartokinase, alpha an 31.1 74 0.0025 28.5 5.8 41 445-485 19-60 (167)
50 1zme_C Proline utilization tra 30.8 45 0.0015 25.3 3.7 23 375-397 43-65 (70)
51 3s1t_A Aspartokinase; ACT doma 29.2 1.5E+02 0.005 27.2 7.5 66 444-518 89-157 (181)
52 3luy_A Probable chorismate mut 28.1 4.1E+02 0.014 27.0 11.3 60 460-521 217-277 (329)
53 2zzt_A Putative uncharacterize 26.6 1.5E+02 0.0051 24.7 6.5 58 465-522 12-72 (107)
54 3s1t_A Aspartokinase; ACT doma 26.2 2.8E+02 0.0097 25.2 8.9 53 446-498 11-67 (181)
55 2jee_A YIIU; FTSZ, septum, coi 23.8 84 0.0029 26.2 4.2 24 371-394 15-38 (81)
56 2lqj_A Mg2+ transport protein; 22.8 1.7E+02 0.0058 24.4 6.1 38 451-488 8-47 (94)
57 2er8_A Regulatory protein Leu3 22.5 49 0.0017 25.4 2.5 21 375-395 48-68 (72)
58 3h90_A Ferrous-iron efflux pum 22.5 2.8E+02 0.0096 26.6 8.5 59 464-522 207-268 (283)
59 3mwb_A Prephenate dehydratase; 21.1 2.3E+02 0.0078 28.7 7.7 68 452-521 202-271 (313)
60 3ab4_A Aspartokinase; aspartat 20.3 2.7E+02 0.0091 28.7 8.3 66 444-518 337-405 (421)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.53 E-value=6.8e-15 Score=123.25 Aligned_cols=67 Identities=34% Similarity=0.407 Sum_probs=62.6
Q ss_pred CCCcchhhHHHHHHHHHHHHHHhhccCCCC-CCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 009555 333 KPTKHFATERQRREQLNGKFKALKDLVPNP-TKNDRASVVGDAIEYIKELLRTVNELKLLVEKKRCVR 399 (532)
Q Consensus 333 ~~~~H~~aER~RR~klnekf~~LrsLvP~~-~K~DKaSIL~dAI~YIk~Lq~~v~~L~~~~e~~r~~~ 399 (532)
++..|+.+||+||++||+.|.+|++|||.. .|+||++||.+||+||++|+.+++.|+.+.+.++...
T Consensus 6 rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~ 73 (82)
T 1am9_A 6 KRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAV 73 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999987 8999999999999999999999999999988776654
No 2
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.39 E-value=2.4e-13 Score=113.53 Aligned_cols=66 Identities=30% Similarity=0.484 Sum_probs=59.7
Q ss_pred CCCcchhhHHHHHHHHHHHHHHhhccCCCC--CCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 009555 333 KPTKHFATERQRREQLNGKFKALKDLVPNP--TKNDRASVVGDAIEYIKELLRTVNELKLLVEKKRCV 398 (532)
Q Consensus 333 ~~~~H~~aER~RR~klnekf~~LrsLvP~~--~K~DKaSIL~dAI~YIk~Lq~~v~~L~~~~e~~r~~ 398 (532)
++..|+..||+||.+||+.|..|+++||.. .|++|++||..||+||+.|+.++++|+.++++++..
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~ 69 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQ 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356899999999999999999999999974 799999999999999999999999999888776543
No 3
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.39 E-value=1.9e-13 Score=113.62 Aligned_cols=64 Identities=31% Similarity=0.518 Sum_probs=60.0
Q ss_pred CCCcchhhHHHHHHHHHHHHHHhhccCCCC--CCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009555 333 KPTKHFATERQRREQLNGKFKALKDLVPNP--TKNDRASVVGDAIEYIKELLRTVNELKLLVEKKR 396 (532)
Q Consensus 333 ~~~~H~~aER~RR~klnekf~~LrsLvP~~--~K~DKaSIL~dAI~YIk~Lq~~v~~L~~~~e~~r 396 (532)
++..|+.+||+||.+||+.|..|+++||.. .|++|++||..||+||+.|++++++|+.+++.++
T Consensus 12 ~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~ 77 (80)
T 1hlo_A 12 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLK 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999975 6999999999999999999999999999887764
No 4
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.37 E-value=1.6e-13 Score=109.67 Aligned_cols=55 Identities=24% Similarity=0.523 Sum_probs=50.6
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHhhccCCCCC------CCCccchHHHHHHHHHHHHHHH
Q 009555 331 AGKPTKHFATERQRREQLNGKFKALKDLVPNPT------KNDRASVVGDAIEYIKELLRTV 385 (532)
Q Consensus 331 ~s~~~~H~~aER~RR~klnekf~~LrsLvP~~~------K~DKaSIL~dAI~YIk~Lq~~v 385 (532)
..++..|+.+||+||++||+.|.+|++|||.+. |++|++||..||+||++|+++.
T Consensus 3 ~~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 3 EKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 357899999999999999999999999999874 7899999999999999999764
No 5
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.35 E-value=1.3e-13 Score=110.44 Aligned_cols=54 Identities=28% Similarity=0.429 Sum_probs=49.1
Q ss_pred CCCcchhhHHHHHHHHHHHHHHhhccCCCC-------CCCCccchHHHHHHHHHHHHHHHH
Q 009555 333 KPTKHFATERQRREQLNGKFKALKDLVPNP-------TKNDRASVVGDAIEYIKELLRTVN 386 (532)
Q Consensus 333 ~~~~H~~aER~RR~klnekf~~LrsLvP~~-------~K~DKaSIL~dAI~YIk~Lq~~v~ 386 (532)
++..|..+||+||++||..|.+|++|||.. .|.+||+||+.||+||++||++++
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 578999999999999999999999999954 567899999999999999998753
No 6
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.34 E-value=1.1e-12 Score=116.84 Aligned_cols=62 Identities=27% Similarity=0.482 Sum_probs=52.4
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHhhccCCCC----CCCCccchHHHHHHHHHHHHHHHHHHHHHH
Q 009555 331 AGKPTKHFATERQRREQLNGKFKALKDLVPNP----TKNDRASVVGDAIEYIKELLRTVNELKLLV 392 (532)
Q Consensus 331 ~s~~~~H~~aER~RR~klnekf~~LrsLvP~~----~K~DKaSIL~dAI~YIk~Lq~~v~~L~~~~ 392 (532)
..++..|+.+||+||++||++|.+|++|||.+ .|++|++||..||+||++||.+++.|+...
T Consensus 25 ~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~ 90 (118)
T 4ati_A 25 RQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLE 90 (118)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34789999999999999999999999999976 378899999999999999999999998653
No 7
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.33 E-value=8.6e-13 Score=112.01 Aligned_cols=64 Identities=30% Similarity=0.385 Sum_probs=57.6
Q ss_pred CCCcchhhHHHHHHHHHHHHHHhhccCCCC---CCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009555 333 KPTKHFATERQRREQLNGKFKALKDLVPNP---TKNDRASVVGDAIEYIKELLRTVNELKLLVEKKR 396 (532)
Q Consensus 333 ~~~~H~~aER~RR~klnekf~~LrsLvP~~---~K~DKaSIL~dAI~YIk~Lq~~v~~L~~~~e~~r 396 (532)
++..|+..||+||.+||+.|..|+.+||.. .|++|++||..||+||++|+.+.+.|..+++.++
T Consensus 6 ~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~ 72 (88)
T 1nkp_A 6 KRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLR 72 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999975 5999999999999999999999998887665543
No 8
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.32 E-value=6.7e-13 Score=108.91 Aligned_cols=58 Identities=24% Similarity=0.434 Sum_probs=53.1
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHhhccCCCC-CCCCccchHHHHHHHHHHHHHHHHHHH
Q 009555 332 GKPTKHFATERQRREQLNGKFKALKDLVPNP-TKNDRASVVGDAIEYIKELLRTVNELK 389 (532)
Q Consensus 332 s~~~~H~~aER~RR~klnekf~~LrsLvP~~-~K~DKaSIL~dAI~YIk~Lq~~v~~L~ 389 (532)
.++..|+.+||+||++||+.|.+|++|||.. .|+||++||..||+||++||.++.=|+
T Consensus 7 ~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 7 AKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4678999999999999999999999999965 699999999999999999999886554
No 9
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.27 E-value=6.7e-12 Score=104.93 Aligned_cols=64 Identities=23% Similarity=0.278 Sum_probs=58.2
Q ss_pred CCcchhhHHHHHHHHHHHHHHhhccCCCC---CCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009555 334 PTKHFATERQRREQLNGKFKALKDLVPNP---TKNDRASVVGDAIEYIKELLRTVNELKLLVEKKRC 397 (532)
Q Consensus 334 ~~~H~~aER~RR~klnekf~~LrsLvP~~---~K~DKaSIL~dAI~YIk~Lq~~v~~L~~~~e~~r~ 397 (532)
+..|+..||+||..||+.|..|+++||.. .|.+|++||..|++||+.|+.+.++|..+++.++.
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~ 68 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQR 68 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999965 68899999999999999999999999988876654
No 10
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.21 E-value=1.7e-12 Score=106.91 Aligned_cols=51 Identities=29% Similarity=0.419 Sum_probs=47.8
Q ss_pred CCCcchhhHHHHHHHHHHHHHHhhccCCCC----CCCCccchHHHHHHHHHHHHH
Q 009555 333 KPTKHFATERQRREQLNGKFKALKDLVPNP----TKNDRASVVGDAIEYIKELLR 383 (532)
Q Consensus 333 ~~~~H~~aER~RR~klnekf~~LrsLvP~~----~K~DKaSIL~dAI~YIk~Lq~ 383 (532)
++..|+.+||+||++||+.|.+|++|||.+ .|+||++||..||+||+.|+.
T Consensus 9 rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 9 AREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 678999999999999999999999999965 799999999999999999874
No 11
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.14 E-value=1.3e-11 Score=102.30 Aligned_cols=58 Identities=28% Similarity=0.401 Sum_probs=48.1
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHhhccCCC---CCCC-CccchHHHHHHHHHHHHHHHHHHH
Q 009555 332 GKPTKHFATERQRREQLNGKFKALKDLVPN---PTKN-DRASVVGDAIEYIKELLRTVNELK 389 (532)
Q Consensus 332 s~~~~H~~aER~RR~klnekf~~LrsLvP~---~~K~-DKaSIL~dAI~YIk~Lq~~v~~L~ 389 (532)
.++..|+..||+||.+||+.|.+|+.+||. ..|. +|.+||..||+||+.|++++++++
T Consensus 4 ~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 4 DKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467899999999999999999999999995 3444 688899999999999999998876
No 12
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=98.80 E-value=2.4e-09 Score=85.05 Aligned_cols=54 Identities=28% Similarity=0.324 Sum_probs=48.5
Q ss_pred CCCcchhhHHHHHHHHHHHHHHhhccCCCC---CCCCccchHHHHHHHHHHHHHHHH
Q 009555 333 KPTKHFATERQRREQLNGKFKALKDLVPNP---TKNDRASVVGDAIEYIKELLRTVN 386 (532)
Q Consensus 333 ~~~~H~~aER~RR~klnekf~~LrsLvP~~---~K~DKaSIL~dAI~YIk~Lq~~v~ 386 (532)
++..++..||+|+..||+.|..||.+||.. .|.+|..+|..||+||+.|++.++
T Consensus 2 rR~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 2 RRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 356789999999999999999999999965 588999999999999999998653
No 13
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=98.79 E-value=2e-09 Score=87.58 Aligned_cols=54 Identities=22% Similarity=0.369 Sum_probs=49.3
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHhhccCCCC--CCCCccchHHHHHHHHHHHHHHH
Q 009555 332 GKPTKHFATERQRREQLNGKFKALKDLVPNP--TKNDRASVVGDAIEYIKELLRTV 385 (532)
Q Consensus 332 s~~~~H~~aER~RR~klnekf~~LrsLvP~~--~K~DKaSIL~dAI~YIk~Lq~~v 385 (532)
.++..|+..||+|+..||+.|..||.+||.. .|.+|..||..||+||..|++.+
T Consensus 11 ~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 11 DRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999964 68899999999999999999765
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.72 E-value=7.2e-09 Score=105.57 Aligned_cols=54 Identities=28% Similarity=0.507 Sum_probs=42.5
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHhhccCC-CCCCCCccchHHHHHHHHHHHHHH
Q 009555 331 AGKPTKHFATERQRREQLNGKFKALKDLVP-NPTKNDRASVVGDAIEYIKELLRT 384 (532)
Q Consensus 331 ~s~~~~H~~aER~RR~klnekf~~LrsLvP-~~~K~DKaSIL~dAI~YIk~Lq~~ 384 (532)
..++..|+.+||+||++||+.|.+|++||| ...|+||++||..||.|||.|+..
T Consensus 10 ~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 10 KAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhh
Confidence 347889999999999999999999999999 557999999999999999999864
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.49 E-value=3.2e-08 Score=102.13 Aligned_cols=53 Identities=28% Similarity=0.415 Sum_probs=49.1
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHhhccCC----CCCCCCccchHHHHHHHHHHHHHH
Q 009555 332 GKPTKHFATERQRREQLNGKFKALKDLVP----NPTKNDRASVVGDAIEYIKELLRT 384 (532)
Q Consensus 332 s~~~~H~~aER~RR~klnekf~~LrsLvP----~~~K~DKaSIL~dAI~YIk~Lq~~ 384 (532)
.++..|+.+||+||++||+.|.+|++||| ...|+||++||..||.|||.|+..
T Consensus 12 ~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 12 NAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred hhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence 36789999999999999999999999999 568999999999999999999853
No 16
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.27 E-value=1.8e-07 Score=76.19 Aligned_cols=46 Identities=22% Similarity=0.369 Sum_probs=41.7
Q ss_pred hhhHHHHHHHHHHHHHHhhccCCCC---CCCCccchHHHHHHHHHHHHH
Q 009555 338 FATERQRREQLNGKFKALKDLVPNP---TKNDRASVVGDAIEYIKELLR 383 (532)
Q Consensus 338 ~~aER~RR~klnekf~~LrsLvP~~---~K~DKaSIL~dAI~YIk~Lq~ 383 (532)
+..||+|+..||+-|..||.+||.. .|.+|..+|.-||+||..||.
T Consensus 19 ~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 19 AEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp BCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 3568999999999999999999965 688999999999999999984
No 17
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.21 E-value=1.9e-06 Score=72.61 Aligned_cols=49 Identities=24% Similarity=0.497 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhhccCCCC----CCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Q 009555 345 REQLNGKFKALKDLVPNP----TKNDRASVVGDAIEYIKELLRTVNELKLLVE 393 (532)
Q Consensus 345 R~klnekf~~LrsLvP~~----~K~DKaSIL~dAI~YIk~Lq~~v~~L~~~~e 393 (532)
|..||+++.+|..|||.. .|.+|++||..|++||+.||++++.+..+..
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~ 56 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLEN 56 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999964 5789999999999999999999998876543
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.39 E-value=0.00019 Score=62.15 Aligned_cols=47 Identities=23% Similarity=0.394 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHHHHhhccCCCC---CCCCccchHHHHHHHHHHHHHHHH
Q 009555 340 TERQRREQLNGKFKALKDLVPNP---TKNDRASVVGDAIEYIKELLRTVN 386 (532)
Q Consensus 340 aER~RR~klnekf~~LrsLvP~~---~K~DKaSIL~dAI~YIk~Lq~~v~ 386 (532)
.||.|=..||+-|..||.+||.. .|..|..+|.-||+||+.|+.-++
T Consensus 32 ~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~ 81 (97)
T 4aya_A 32 DPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALD 81 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 45677777999999999999964 688999999999999999987654
No 19
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=96.98 E-value=0.011 Score=48.07 Aligned_cols=69 Identities=16% Similarity=0.204 Sum_probs=58.2
Q ss_pred eEEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeCcEEEEEEEEEEccCCccCHHHHHHHHHHHHHHh
Q 009555 451 EVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIGDYYSFLFNTKIYEGSSVYAGSIANKLIEVMDKQ 521 (532)
Q Consensus 451 dV~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg~~vi~tI~aKV~eGs~v~ae~IkqaL~eaL~~~ 521 (532)
.+.|.|.|.+++|++..|..+|-+.|..|.+++....++.+...+.+.+.+ ....++|.++|.++-...
T Consensus 5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~--~~~l~~l~~~L~~~~~~~ 73 (91)
T 1zpv_A 5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDE--KQDFTYLRNEFEAFGQTL 73 (91)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESS--CCCHHHHHHHHHHHHHHH
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCC--CCCHHHHHHHHHHHHHHc
Confidence 477999999999999999999999999999999888778777777777754 346789999998776553
No 20
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=96.00 E-value=0.039 Score=51.07 Aligned_cols=68 Identities=10% Similarity=0.063 Sum_probs=55.4
Q ss_pred eEEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeCcEEEEEEEEEEccCCccCHHHHHHHHHHHHHHh
Q 009555 451 EVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIGDYYSFLFNTKIYEGSSVYAGSIANKLIEVMDKQ 521 (532)
Q Consensus 451 dV~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg~~vi~tI~aKV~eGs~v~ae~IkqaL~eaL~~~ 521 (532)
.+.|.|.|++|+|++..|..+|.+.|+.|+.+......+.+...+.+...+ ...++|.+.|.++....
T Consensus 6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~---~~~~~l~~~L~~~~~~~ 73 (192)
T 1u8s_A 6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSP---SNITRVETTLPLLGQQH 73 (192)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECH---HHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCC---CCHHHHHHHHHHHHHhc
Confidence 477999999999999999999999999999999988888777766666432 35677888887776543
No 21
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=95.14 E-value=0.11 Score=48.61 Aligned_cols=70 Identities=10% Similarity=0.070 Sum_probs=55.3
Q ss_pred eEEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeC------cEEEEEEEEEEccCCccCHHHHHHHHHHHHHHhhh
Q 009555 451 EVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIG------DYYSFLFNTKIYEGSSVYAGSIANKLIEVMDKQYA 523 (532)
Q Consensus 451 dV~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg------~~vi~tI~aKV~eGs~v~ae~IkqaL~eaL~~~~~ 523 (532)
.+.|.|.|++++|++..|..+|-++|+.|..+...+.+ +++...+.+.+.+ ... ++|++.|..+.....+
T Consensus 93 ~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~~--~~~-~~l~~~l~~~a~~l~~ 168 (195)
T 2nyi_A 93 EYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFPF--PLY-QEVVTALSRVEEEFGV 168 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEEG--GGH-HHHHHHHHHHHHHHTC
T ss_pred EEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcCC--Ccc-HHHHHHHHHHHHHcCe
Confidence 47799999999999999999999999999999988775 5555555555442 345 8888888887766543
No 22
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=95.10 E-value=0.14 Score=47.26 Aligned_cols=70 Identities=7% Similarity=0.128 Sum_probs=54.2
Q ss_pred eEEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeC--------cEEEEEEEEEEccCCccCHHHHHHHHHHHHHHhh
Q 009555 451 EVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIG--------DYYSFLFNTKIYEGSSVYAGSIANKLIEVMDKQY 522 (532)
Q Consensus 451 dV~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg--------~~vi~tI~aKV~eGs~v~ae~IkqaL~eaL~~~~ 522 (532)
.+.|.|.|++++|++..|.++|-+.|++|..+...+.+ +.+...+.+.+. ...+.++|++.|.++.....
T Consensus 93 ~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~--~~~~~~~l~~~l~~~~~~~~ 170 (192)
T 1u8s_A 93 TVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVD--SGCNLMQLQEEFDALCTALD 170 (192)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEEC--TTSCHHHHHHHHHHHHHHHT
T ss_pred eEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCC--CCCCHHHHHHHHHHHHHHhC
Confidence 46789999999999999999999999999999887664 244434444432 35578999999998776644
No 23
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=94.95 E-value=0.12 Score=48.29 Aligned_cols=50 Identities=6% Similarity=0.183 Sum_probs=43.7
Q ss_pred eEEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeCcEEEEEEEEEEc
Q 009555 451 EVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIGDYYSFLFNTKIY 500 (532)
Q Consensus 451 dV~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg~~vi~tI~aKV~ 500 (532)
.+.|.|.|+.|+|++..|..+|.++|+.|+.+......+.+...+.+...
T Consensus 5 ~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~ 54 (195)
T 2nyi_A 5 SFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLN 54 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES
T ss_pred EEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEec
Confidence 47799999999999999999999999999999999888877666666543
No 24
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=94.65 E-value=0.1 Score=41.52 Aligned_cols=50 Identities=8% Similarity=0.106 Sum_probs=41.5
Q ss_pred eEEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeCcEEEEEEEEEEc
Q 009555 451 EVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIGDYYSFLFNTKIY 500 (532)
Q Consensus 451 dV~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg~~vi~tI~aKV~ 500 (532)
.+.|+|.+.+++|+|.+|..+|.+.|+.|.++.....++.....|.+.+.
T Consensus 5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~ 54 (88)
T 2ko1_A 5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVK 54 (88)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEES
T ss_pred EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEEC
Confidence 36688999999999999999999999999999988766655555666654
No 25
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=89.97 E-value=2.2 Score=43.24 Aligned_cols=71 Identities=4% Similarity=0.014 Sum_probs=53.9
Q ss_pred eEEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEee--CcEEEEEEEEEEccCCccCHHHHHHHHHHHHHHhh
Q 009555 451 EVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHI--GDYYSFLFNTKIYEGSSVYAGSIANKLIEVMDKQY 522 (532)
Q Consensus 451 dV~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~v--g~~vi~tI~aKV~eGs~v~ae~IkqaL~eaL~~~~ 522 (532)
.+.|.|.|++|+|+...|...|-+.|+.|+.++-... .+++...+.+.+. +...+.+++.+.|..+-+...
T Consensus 22 ~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~-~~~~~~~~L~~~l~~la~~l~ 94 (302)
T 3o1l_A 22 TFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRAD-TLPFDLDGFREAFTPIAEEFS 94 (302)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGG-GSSSCHHHHHHHHHHHHHHHT
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecC-CCCCCHHHHHHHHHHHHHHhC
Confidence 4679999999999999999999999999999987754 5665444444332 224678999998877655443
No 26
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=89.84 E-value=1.4 Score=44.25 Aligned_cols=69 Identities=9% Similarity=-0.041 Sum_probs=53.2
Q ss_pred eEEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEe--eCcEEEEEEEEEEccCCccCHHHHHHHHHHHHHHh
Q 009555 451 EVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGH--IGDYYSFLFNTKIYEGSSVYAGSIANKLIEVMDKQ 521 (532)
Q Consensus 451 dV~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~--vg~~vi~tI~aKV~eGs~v~ae~IkqaL~eaL~~~ 521 (532)
.+.|.|.|++++|+...|...|-+.|+.|+.++-.. ..+++...+.+.+.+ ..+.+++++.+..+-+..
T Consensus 8 ~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~--~~~~~~L~~~f~~la~~l 78 (286)
T 3n0v_A 8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPD--DFDEAGFRAGLAERSEAF 78 (286)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCS--SCCHHHHHHHHHHHHGGG
T ss_pred cEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCC--CCCHHHHHHHHHHHHHHc
Confidence 477999999999999999999999999999998773 356665444444432 467899999887664443
No 27
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=89.82 E-value=0.9 Score=46.38 Aligned_cols=70 Identities=11% Similarity=0.021 Sum_probs=55.5
Q ss_pred eEEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeCcEEEEEEEEEEccCCccCHHHHHHHHHHHHHHh
Q 009555 451 EVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIGDYYSFLFNTKIYEGSSVYAGSIANKLIEVMDKQ 521 (532)
Q Consensus 451 dV~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg~~vi~tI~aKV~eGs~v~ae~IkqaL~eaL~~~ 521 (532)
.+.|.|.|++|+|+...|..+|-+.|..|+.++-...++++...+.+.+.+. ..+.++|.+.|..+-...
T Consensus 12 ~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~ 81 (415)
T 3p96_A 12 SVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPAD-VADGPALRHDVEAAIRKV 81 (415)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECHH-HHTSHHHHHHHHHHHHHT
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecCC-cCCHHHHHHHHHHHHHHc
Confidence 5789999999999999999999999999999999888897766666665422 224577888887664443
No 28
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=89.42 E-value=0.74 Score=40.42 Aligned_cols=36 Identities=14% Similarity=0.151 Sum_probs=33.0
Q ss_pred EEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeC
Q 009555 453 TIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIG 488 (532)
Q Consensus 453 ~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg 488 (532)
.|+|.|.+|.|+|.+|+++|.+.++++..+++...|
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~g 37 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIG 37 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETTT
T ss_pred EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecCC
Confidence 488999999999999999999999999999987653
No 29
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=89.28 E-value=2.3 Score=42.72 Aligned_cols=71 Identities=10% Similarity=-0.033 Sum_probs=54.9
Q ss_pred eEEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEE--eeCcEEEEEEEEEEccCCccCHHHHHHHHHHHHHHhh
Q 009555 451 EVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGG--HIGDYYSFLFNTKIYEGSSVYAGSIANKLIEVMDKQY 522 (532)
Q Consensus 451 dV~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS--~vg~~vi~tI~aKV~eGs~v~ae~IkqaL~eaL~~~~ 522 (532)
.+.|.|.|++|+|+...|...|-+.|+.|+.++-. ...+++...+.+.+.+ ...+.+++.+.|..+-+...
T Consensus 6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~-~~~~~~~L~~~f~~la~~~~ 78 (288)
T 3obi_A 6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAA-KVIPLASLRTGFGVIAAKFT 78 (288)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESS-CCCCHHHHHHHHHHHHHHTT
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCC-CCCCHHHHHHHHHHHHHHcC
Confidence 57799999999999999999999999999999875 3356665555555532 24678999998877655443
No 30
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=87.53 E-value=3.1 Score=41.85 Aligned_cols=73 Identities=5% Similarity=0.049 Sum_probs=53.0
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEe--eCcEEEEEEEEEEcc-CCccCHHHHHHHHHHHHHHhh
Q 009555 450 DEVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGH--IGDYYSFLFNTKIYE-GSSVYAGSIANKLIEVMDKQY 522 (532)
Q Consensus 450 ~dV~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~--vg~~vi~tI~aKV~e-Gs~v~ae~IkqaL~eaL~~~~ 522 (532)
..+.|.+.|++|+|+...|...|-+.|+.|+.++-.. ..+++...+.+.... +...+.+++.+.+..+-+...
T Consensus 9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~~~L~~~f~~la~~~~ 84 (292)
T 3lou_A 9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRVDALRREFEPIAERFR 84 (292)
T ss_dssp CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----CCHHHHHHHHHHHHHHHT
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcccCCCHHHHHHHHHHHHHhcC
Confidence 3577999999999999999999999999999998773 346655444433320 224678899998877655443
No 31
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=85.64 E-value=0.91 Score=42.19 Aligned_cols=63 Identities=10% Similarity=0.125 Sum_probs=45.8
Q ss_pred EEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeC--cEEEEEEEEEEccCCccCHHHHHHHHHHH
Q 009555 452 VTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIG--DYYSFLFNTKIYEGSSVYAGSIANKLIEV 517 (532)
Q Consensus 452 V~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg--~~vi~tI~aKV~eGs~v~ae~IkqaL~ea 517 (532)
..|.|...+++|.|.+|..+|.+.|+.|.+.++.... +....+|.+. +..-..+.|...|.++
T Consensus 4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~---~d~~~leqI~kqL~Kl 68 (164)
T 2f1f_A 4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV---GDEKVLEQIEKQLHKL 68 (164)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE---SCHHHHHHHHHHHHHS
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe---ccHHHHHHHHHHHcCC
Confidence 4678899999999999999999999999999987554 5565566655 3322345555555443
No 32
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=82.72 E-value=1.2 Score=41.50 Aligned_cols=63 Identities=13% Similarity=0.168 Sum_probs=45.7
Q ss_pred EEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeC--cEEEEEEEEEEccCCccCHHHHHHHHHHH
Q 009555 452 VTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIG--DYYSFLFNTKIYEGSSVYAGSIANKLIEV 517 (532)
Q Consensus 452 V~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg--~~vi~tI~aKV~eGs~v~ae~IkqaL~ea 517 (532)
-.|.|...+++|.|.+|..+|.+.|+.|.+.++.... +....+|.+. +..-..+.|...|.++
T Consensus 5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~---~d~~~leql~kQL~Kl 69 (165)
T 2pc6_A 5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTN---GPDEIVEQITKQLNKL 69 (165)
T ss_dssp EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEE---ECHHHHHHHHHHHHHS
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEe---ccHHHHHHHHHHhcCC
Confidence 4678889999999999999999999999999987554 5666666665 2222344444444443
No 33
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=82.31 E-value=4.1 Score=40.83 Aligned_cols=68 Identities=10% Similarity=0.033 Sum_probs=47.5
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEE--eeCcEEEEEEEEEEccCCccCHHHHHHHHHHHHHH
Q 009555 450 DEVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGG--HIGDYYSFLFNTKIYEGSSVYAGSIANKLIEVMDK 520 (532)
Q Consensus 450 ~dV~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS--~vg~~vi~tI~aKV~eGs~v~ae~IkqaL~eaL~~ 520 (532)
..+.|.+.|++|+|+...|...|-+.|+.|+.++-. ...+++...+.+... ..+.+++.+.|..+-++
T Consensus 6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~---~~~~~~L~~~f~~la~~ 75 (287)
T 3nrb_A 6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIP---VAGVNDFNSAFGKVVEK 75 (287)
T ss_dssp TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECC---C---CHHHHHHHHHHGG
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcC---CCCHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999875 334655443333322 23345777777655443
No 34
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=80.43 E-value=3.4 Score=40.45 Aligned_cols=61 Identities=13% Similarity=0.086 Sum_probs=43.8
Q ss_pred eEEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeC-----cEEEEEEEEEEccCCccCHHHHHHHHHH
Q 009555 451 EVTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIG-----DYYSFLFNTKIYEGSSVYAGSIANKLIE 516 (532)
Q Consensus 451 dV~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg-----~~vi~tI~aKV~eGs~v~ae~IkqaL~e 516 (532)
.+.|.|.+.+|+|+|.+|+.+|-+.+..|.+++..... +....+ .++.+. ..++|.++|++
T Consensus 4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~--IEV~d~---~Le~LL~kLrk 69 (223)
T 1y7p_A 4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIY--FEIEGG---DFEKILERVKT 69 (223)
T ss_dssp CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEE--EEECSS---CHHHHHHHHHT
T ss_pred eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEE--EEECCC---CHHHHHHHHhC
Confidence 47789999999999999999999999999999987753 344333 676533 66777776654
No 35
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=73.45 E-value=3.8 Score=39.21 Aligned_cols=64 Identities=8% Similarity=0.125 Sum_probs=47.2
Q ss_pred EEEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeC--cEEEEEEEEEEccCCccCHHHHHHHHHHHH
Q 009555 452 VTIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIG--DYYSFLFNTKIYEGSSVYAGSIANKLIEVM 518 (532)
Q Consensus 452 V~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg--~~vi~tI~aKV~eGs~v~ae~IkqaL~eaL 518 (532)
-.|.|..++++|.|.+|..+|...|+.|.+..+.... +...++|.+.- ..-..+.|...|.+++
T Consensus 30 ~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g---~e~~ieqL~kQL~KLi 95 (193)
T 2fgc_A 30 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKG---DDKTIEQIEKQAYKLV 95 (193)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEE---CTTHHHHHHHHHTTST
T ss_pred EEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEEC---CHHHHHHHHHHhcCcC
Confidence 5678888999999999999999999999999887543 56666666652 2233566666665543
No 36
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=57.30 E-value=50 Score=28.46 Aligned_cols=56 Identities=9% Similarity=-0.057 Sum_probs=37.3
Q ss_pred EEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeCcEEEEEEEEEEccCCccCHHHHHHHHHH
Q 009555 454 IKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIGDYYSFLFNTKIYEGSSVYAGSIANKLIE 516 (532)
Q Consensus 454 IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg~~vi~tI~aKV~eGs~v~ae~IkqaL~e 516 (532)
|-+.-+.++|.+.+++++|.+.|+.|...-.+..++.....|.. . +.+...+.|++
T Consensus 75 v~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~--~-----d~~~A~~~L~~ 130 (144)
T 2f06_A 75 VGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRP--S-----NMDKCIEVLKE 130 (144)
T ss_dssp EEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEE--S-----CHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEe--C-----CHHHHHHHHHH
Confidence 44455799999999999999999999665443234444444433 2 45555555554
No 37
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=47.74 E-value=64 Score=28.88 Aligned_cols=39 Identities=13% Similarity=0.147 Sum_probs=31.4
Q ss_pred EEEeCCeEEEEEEecC---CCChHHHHHHHHHHcCCcEEEEE
Q 009555 445 VRIIDDEVTIKLVQRK---KIDCLLFVSRVLDELQLDLHHVA 483 (532)
Q Consensus 445 Vriig~dV~IkI~C~k---R~GlLl~VL~aLEeLgLdVlsAs 483 (532)
|...++-..|.|.... ++|.+.+++++|.+.|+.|....
T Consensus 97 i~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~is 138 (167)
T 2re1_A 97 IDGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIS 138 (167)
T ss_dssp EEEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEE
T ss_pred EEecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEE
Confidence 3445666778887754 88999999999999999998864
No 38
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=43.39 E-value=1.2e+02 Score=24.06 Aligned_cols=58 Identities=14% Similarity=0.221 Sum_probs=43.1
Q ss_pred HHHHHHHHHHc----CCcEEEEEEEeeCcEEEEEEEEEEccCCc-cCHHHHHHHHHHHHHHhh
Q 009555 465 LLFVSRVLDEL----QLDLHHVAGGHIGDYYSFLFNTKIYEGSS-VYAGSIANKLIEVMDKQY 522 (532)
Q Consensus 465 Ll~VL~aLEeL----gLdVlsAsiS~vg~~vi~tI~aKV~eGs~-v~ae~IkqaL~eaL~~~~ 522 (532)
+..|.++|.+. -.+|.+..+-..|......+++.+.++-. ..+++|.+++.+.|++.+
T Consensus 12 ~~~I~~~l~~~~~~gV~~vh~l~~~~~g~~~~v~~hi~v~~~~~~~~~h~i~~~ie~~l~~~~ 74 (94)
T 3byp_A 12 VERIRAFLQERIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAF 74 (94)
T ss_dssp HHHHHHHHHHHHTTTCSEEEEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCCCCceeeeeEEEEEECCcEEEEEEEEECCCCcHHHHHHHHHHHHHHHHHHC
Confidence 44566777665 56788888877888887889999865544 356888888988887665
No 39
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=42.40 E-value=1.1e+02 Score=27.29 Aligned_cols=54 Identities=19% Similarity=0.147 Sum_probs=37.2
Q ss_pred EEEeCCeEEEEEEe-cCCCChHHHHHHHHHHcCCcEEEEEEEee---CcEEEEEEEEE
Q 009555 445 VRIIDDEVTIKLVQ-RKKIDCLLFVSRVLDELQLDLHHVAGGHI---GDYYSFLFNTK 498 (532)
Q Consensus 445 Vriig~dV~IkI~C-~kR~GlLl~VL~aLEeLgLdVlsAsiS~v---g~~vi~tI~aK 498 (532)
|....+.+.|.|.. .+++|.+.+|+++|.+.|+.|.....+.. .+....+|.+.
T Consensus 10 Ia~~~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~ 67 (167)
T 2dt9_A 10 VALDLDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVK 67 (167)
T ss_dssp EEEECSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEE
T ss_pred EEEeCCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEe
Confidence 34456777777765 67889999999999999998877654422 23344445443
No 40
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=41.50 E-value=53 Score=28.54 Aligned_cols=49 Identities=16% Similarity=0.129 Sum_probs=41.1
Q ss_pred eEEEEEEecCCCChHHHHHHHHHHc---CCcEEEEEEEeeCcEEEEEEEEEEc
Q 009555 451 EVTIKLVQRKKIDCLLFVSRVLDEL---QLDLHHVAGGHIGDYYSFLFNTKIY 500 (532)
Q Consensus 451 dV~IkI~C~kR~GlLl~VL~aLEeL---gLdVlsAsiS~vg~~vi~tI~aKV~ 500 (532)
+..+||.....+++...|.++++.. +.++ ...-|..|..+.+++.+.|.
T Consensus 36 ~y~~KvIG~a~~~~~~~V~~vv~~~~p~d~~~-~~r~Ss~GkY~Svtv~v~v~ 87 (109)
T 1rwu_A 36 PFTYKVMGQALPELVDQVVEVVQRHAPGDYTP-TVKPSSKGNYHSVSITINAT 87 (109)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHHHSSSCCCE-EEEESSCSSEEEEEEEECCS
T ss_pred CceEEEEEECcHHHHHHHHHHHHHhCCCCCCc-eecCCCCCeEEEEEEEEEEC
Confidence 4668888888889888999999998 6776 66888889999999998875
No 41
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=40.14 E-value=77 Score=24.60 Aligned_cols=44 Identities=18% Similarity=0.116 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009555 341 ERQRREQLNGKFKALKDLVPNPTKNDRASVVGDAIEYIKELLRTVNELKLLVEKKRC 397 (532)
Q Consensus 341 ER~RR~klnekf~~LrsLvP~~~K~DKaSIL~dAI~YIk~Lq~~v~~L~~~~e~~r~ 397 (532)
||++|.+...+..+-++ =..-..|+..|+.+++.|+.+...+..
T Consensus 1 Ekr~rrrerNR~AA~rc-------------R~rKk~~~~~Le~~v~~L~~~n~~L~~ 44 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKC-------------RNRRRELTDTLQAETDQLEDEKSALQT 44 (63)
T ss_dssp CHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666777777665 123456777777777777766555433
No 42
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=38.60 E-value=45 Score=24.43 Aligned_cols=25 Identities=40% Similarity=0.409 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 009555 371 VGDAIEYIKELLRTVNELKLLVEKK 395 (532)
Q Consensus 371 L~dAI~YIk~Lq~~v~~L~~~~e~~ 395 (532)
+.+--+||++|+++..+|+..+|.+
T Consensus 5 vkelknyiqeleernaelknlkehl 29 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKNLKEHL 29 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHhHHHHH
Confidence 5677899999999999998776654
No 43
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=35.60 E-value=1.1e+02 Score=27.33 Aligned_cols=40 Identities=8% Similarity=0.079 Sum_probs=32.8
Q ss_pred EEEEeCCeEEEEEEecC---CCChHHHHHHHHHHcCCcEEEEE
Q 009555 444 DVRIIDDEVTIKLVQRK---KIDCLLFVSRVLDELQLDLHHVA 483 (532)
Q Consensus 444 eVriig~dV~IkI~C~k---R~GlLl~VL~aLEeLgLdVlsAs 483 (532)
.|.+.++-..|.|.... ++|.+.+++++|.+.|+.|.-.+
T Consensus 88 ~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is 130 (167)
T 2dt9_A 88 EAILRPDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIA 130 (167)
T ss_dssp EEEEECSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEE
T ss_pred cEEEeCCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEE
Confidence 55566777888888855 88999999999999999996554
No 44
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=35.55 E-value=1.5e+02 Score=26.84 Aligned_cols=67 Identities=15% Similarity=0.084 Sum_probs=43.8
Q ss_pred EEEEeCCeEEEEEEec---CCCChHHHHHHHHHHcCCcEEEEEEEeeCcEEEEEEEEEEccCCccCHHHHHHHHHHHHH
Q 009555 444 DVRIIDDEVTIKLVQR---KKIDCLLFVSRVLDELQLDLHHVAGGHIGDYYSFLFNTKIYEGSSVYAGSIANKLIEVMD 519 (532)
Q Consensus 444 eVriig~dV~IkI~C~---kR~GlLl~VL~aLEeLgLdVlsAsiS~vg~~vi~tI~aKV~eGs~v~ae~IkqaL~eaL~ 519 (532)
.|.+.++-..|.|... ..+|.+.+++++|.+.|+.|.-.+ +..-.+.+.+ . .-+.+...+.|++.+.
T Consensus 88 ~v~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~is--tSe~~Is~vV----~---~~d~~~Av~~Lh~~F~ 157 (178)
T 2dtj_A 88 NVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS--TSEIRISVLI----R---EDDLDAAARALHEQFQ 157 (178)
T ss_dssp EEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE--EETTEEEEEE----E---GGGHHHHHHHHHHHHT
T ss_pred eEEEeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEE--cCCCeEEEEE----e---HHHHHHHHHHHHHHHc
Confidence 3455677788888875 567999999999999999997754 3333333222 1 1235555566666553
No 45
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=33.50 E-value=87 Score=31.01 Aligned_cols=66 Identities=11% Similarity=0.103 Sum_probs=47.7
Q ss_pred EEEEEEe---cCCCChHHHHHHHHHHcCCcEEEEEEEeeCc-EEEEEEEEEEccCCccCHHHHHHHHHHHHHH
Q 009555 452 VTIKLVQ---RKKIDCLLFVSRVLDELQLDLHHVAGGHIGD-YYSFLFNTKIYEGSSVYAGSIANKLIEVMDK 520 (532)
Q Consensus 452 V~IkI~C---~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg~-~vi~tI~aKV~eGs~v~ae~IkqaL~eaL~~ 520 (532)
..|-+.. .+++|.|.++|..|...|++++...+=...+ ..-|.|.+.++ ...-..++++|.++-..
T Consensus 187 tsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e---~~~d~~v~~aL~~L~~~ 256 (267)
T 2qmw_A 187 TSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD---SAITTDIKKVIAILETL 256 (267)
T ss_dssp SEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES---CCSCHHHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEe---cCCcHHHHHHHHHHHHh
Confidence 3445566 7899999999999999999999999876643 34466777765 23346677777665443
No 46
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=33.03 E-value=1.4e+02 Score=27.01 Aligned_cols=40 Identities=15% Similarity=0.150 Sum_probs=30.5
Q ss_pred EEeCCeEEEEEE-ecCCCChHHHHHHHHHHcCCcEEEEEEE
Q 009555 446 RIIDDEVTIKLV-QRKKIDCLLFVSRVLDELQLDLHHVAGG 485 (532)
Q Consensus 446 riig~dV~IkI~-C~kR~GlLl~VL~aLEeLgLdVlsAsiS 485 (532)
....+.+.|.|. -.+++|.+.+|+++|.+.|+.|.....+
T Consensus 10 a~~~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s 50 (178)
T 2dtj_A 10 ATDKSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQN 50 (178)
T ss_dssp EEECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEEC
T ss_pred EecCCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcC
Confidence 455677778884 4788999999999999999666555433
No 47
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=32.28 E-value=2.3e+02 Score=24.20 Aligned_cols=35 Identities=17% Similarity=0.182 Sum_probs=29.5
Q ss_pred EEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEee
Q 009555 453 TIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHI 487 (532)
Q Consensus 453 ~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~v 487 (532)
.|.|.-++++|.+.+|..+|.+.|+.|........
T Consensus 8 ~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~ 42 (144)
T 2f06_A 8 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAEN 42 (144)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEEC
T ss_pred EEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEec
Confidence 45667789999999999999999999988876544
No 48
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=31.93 E-value=1.3e+02 Score=30.05 Aligned_cols=64 Identities=14% Similarity=0.214 Sum_probs=46.2
Q ss_pred EEEEEecCCCChHHHHHHHHHHcCCcEEEEEEEeeCc-EEEEEEEEEEccCCccCHHHHHHHHHHHH
Q 009555 453 TIKLVQRKKIDCLLFVSRVLDELQLDLHHVAGGHIGD-YYSFLFNTKIYEGSSVYAGSIANKLIEVM 518 (532)
Q Consensus 453 ~IkI~C~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg~-~vi~tI~aKV~eGs~v~ae~IkqaL~eaL 518 (532)
.|-+..++++|.|.++|.+|...|+.++...+=...+ ..-|.|.+.++ |.. +-..++++|.++-
T Consensus 202 sl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~e-g~~-~d~~v~~aL~~L~ 266 (283)
T 2qmx_A 202 SIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFI-GHR-EDQNVHNALENLR 266 (283)
T ss_dssp EEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEE-SCT-TSHHHHHHHHHHH
T ss_pred EEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEe-cCC-CcHHHHHHHHHHH
Confidence 3444446899999999999999999999999876653 45567777764 432 2356666666653
No 49
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=31.13 E-value=74 Score=28.46 Aligned_cols=41 Identities=5% Similarity=0.132 Sum_probs=32.8
Q ss_pred EEEeCCeEEEEEEe-cCCCChHHHHHHHHHHcCCcEEEEEEE
Q 009555 445 VRIIDDEVTIKLVQ-RKKIDCLLFVSRVLDELQLDLHHVAGG 485 (532)
Q Consensus 445 Vriig~dV~IkI~C-~kR~GlLl~VL~aLEeLgLdVlsAsiS 485 (532)
|....+...|.|.. .+++|.+.+|+++|.+.|+.|.....+
T Consensus 19 Ia~~~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s 60 (167)
T 2re1_A 19 IAFDKNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQN 60 (167)
T ss_dssp EEEECCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC
T ss_pred EEecCCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcC
Confidence 34456677788874 788999999999999999998877543
No 50
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=30.82 E-value=45 Score=25.35 Aligned_cols=23 Identities=13% Similarity=0.330 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 009555 375 IEYIKELLRTVNELKLLVEKKRC 397 (532)
Q Consensus 375 I~YIk~Lq~~v~~L~~~~e~~r~ 397 (532)
-.||..|+.+++.|+..++.++.
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~ 65 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKA 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35899999999999988876644
No 51
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=29.19 E-value=1.5e+02 Score=27.19 Aligned_cols=66 Identities=8% Similarity=0.018 Sum_probs=43.3
Q ss_pred EEEEeCCeEEEEEEec---CCCChHHHHHHHHHHcCCcEEEEEEEeeCcEEEEEEEEEEccCCccCHHHHHHHHHHHH
Q 009555 444 DVRIIDDEVTIKLVQR---KKIDCLLFVSRVLDELQLDLHHVAGGHIGDYYSFLFNTKIYEGSSVYAGSIANKLIEVM 518 (532)
Q Consensus 444 eVriig~dV~IkI~C~---kR~GlLl~VL~aLEeLgLdVlsAsiS~vg~~vi~tI~aKV~eGs~v~ae~IkqaL~eaL 518 (532)
+|.+.++-..|.|... ..+|.+.+++++|.+.++.|.-++.| .-.+ .+-|.+ -+.+...++|++.+
T Consensus 89 ~v~~~~~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~IstS--ei~I----s~vV~~---~d~~~Av~aLH~~f 157 (181)
T 3s1t_A 89 QLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELISTS--EIRI----SVLCRD---TELDKAVVALHEAF 157 (181)
T ss_dssp EEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEEE--TTEE----EEEEEG---GGHHHHHHHHHHHH
T ss_pred eEEEeCCEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEEcC--CCEE----EEEEeH---HHHHHHHHHHHHHH
Confidence 3455677777887764 57899999999999999998887722 3222 222321 13455556666655
No 52
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=28.09 E-value=4.1e+02 Score=26.97 Aligned_cols=60 Identities=12% Similarity=0.201 Sum_probs=46.4
Q ss_pred CCCChHHHHHHHHHHcCCcEEEEEEEeeCc-EEEEEEEEEEccCCccCHHHHHHHHHHHHHHh
Q 009555 460 KKIDCLLFVSRVLDELQLDLHHVAGGHIGD-YYSFLFNTKIYEGSSVYAGSIANKLIEVMDKQ 521 (532)
Q Consensus 460 kR~GlLl~VL~aLEeLgLdVlsAsiS~vg~-~vi~tI~aKV~eGs~v~ae~IkqaL~eaL~~~ 521 (532)
+++|.|.++|.+|...|+.++...+-...+ ..-|.|.+.++ |.. .-..++++|.++-..+
T Consensus 217 ~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e-g~~-~d~~v~~AL~~L~~~~ 277 (329)
T 3luy_A 217 TGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLD-AAP-WEERFRDALVEIAEHG 277 (329)
T ss_dssp CSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEES-SCT-TSHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEe-CCc-CCHHHHHHHHHHHHhC
Confidence 579999999999999999999999887654 55678888874 533 3466777777765543
No 53
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=26.64 E-value=1.5e+02 Score=24.69 Aligned_cols=58 Identities=19% Similarity=0.142 Sum_probs=40.3
Q ss_pred HHHHHHHHHHcC--CcEEEEEEEeeCcEEEEEEEEEEccCCc-cCHHHHHHHHHHHHHHhh
Q 009555 465 LLFVSRVLDELQ--LDLHHVAGGHIGDYYSFLFNTKIYEGSS-VYAGSIANKLIEVMDKQY 522 (532)
Q Consensus 465 Ll~VL~aLEeLg--LdVlsAsiS~vg~~vi~tI~aKV~eGs~-v~ae~IkqaL~eaL~~~~ 522 (532)
+..|.++|.+.. .+|....+-..|+.+...+++.|..+-. ..+.+|.+++.+.|.+.+
T Consensus 12 ~~~I~~~l~~~~gV~~vh~lr~r~~G~~~~v~~hI~v~~~~sv~eah~i~~~ie~~L~~~~ 72 (107)
T 2zzt_A 12 YDDIFAVLERFPNVHNPHRVRIRRVGTKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRR 72 (107)
T ss_dssp HHHHHHHHTTCSSCEEEEEEEEECSCC-CEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCccccEEEEEEEECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHC
Confidence 345777776653 5566777766787777888998865543 366788888888887654
No 54
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=26.17 E-value=2.8e+02 Score=25.22 Aligned_cols=53 Identities=11% Similarity=0.082 Sum_probs=36.4
Q ss_pred EEeCCeEEEEEEe-cCCCChHHHHHHHHHHcCCcEEEEEEE-ee--CcEEEEEEEEE
Q 009555 446 RIIDDEVTIKLVQ-RKKIDCLLFVSRVLDELQLDLHHVAGG-HI--GDYYSFLFNTK 498 (532)
Q Consensus 446 riig~dV~IkI~C-~kR~GlLl~VL~aLEeLgLdVlsAsiS-~v--g~~vi~tI~aK 498 (532)
....+.+.|+|.. ..++|.+.+|+.+|.+.++.|....-+ .. .+....+|.+.
T Consensus 11 a~~~~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~ 67 (181)
T 3s1t_A 11 AHDRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCS 67 (181)
T ss_dssp EEECSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEE
T ss_pred EecCCEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEe
Confidence 3456667777654 678999999999999999988766532 22 34444555554
No 55
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=23.84 E-value=84 Score=26.23 Aligned_cols=24 Identities=33% Similarity=0.295 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 009555 371 VGDAIEYIKELLRTVNELKLLVEK 394 (532)
Q Consensus 371 L~dAI~YIk~Lq~~v~~L~~~~e~ 394 (532)
|..||+-|.-||.+|++|+.+...
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~ 38 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNS 38 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999977654
No 56
>2lqj_A Mg2+ transport protein; ACT domain, membrane protein, regulation, HYDR; NMR {Mycobacterium tuberculosis}
Probab=22.84 E-value=1.7e+02 Score=24.41 Aligned_cols=38 Identities=13% Similarity=0.265 Sum_probs=29.6
Q ss_pred eEEEEEEecCCCC--hHHHHHHHHHHcCCcEEEEEEEeeC
Q 009555 451 EVTIKLVQRKKID--CLLFVSRVLDELQLDLHHVAGGHIG 488 (532)
Q Consensus 451 dV~IkI~C~kR~G--lLl~VL~aLEeLgLdVlsAsiS~vg 488 (532)
...|+|+|....- ....++++|+..++.+....+..++
T Consensus 8 ~Y~v~Vic~~~~e~~vR~lL~~~L~~~~~~l~~l~s~~~~ 47 (94)
T 2lqj_A 8 PYQVRVICRPKAETYVRAHIVQRTSSNDITLRGIRTGPAG 47 (94)
T ss_dssp EEEEEEEECHHHHHHHHHHHHHHHHHHTEEEEEEEEEECS
T ss_pred EEEEEEEECcHHHHHHHHHHHHHHhcCCCceeEeeeecCC
Confidence 4789999977543 4456889999999999999965533
No 57
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=22.52 E-value=49 Score=25.39 Aligned_cols=21 Identities=10% Similarity=0.037 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 009555 375 IEYIKELLRTVNELKLLVEKK 395 (532)
Q Consensus 375 I~YIk~Lq~~v~~L~~~~e~~ 395 (532)
-.||..|+.+|+.|+..++.+
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999999877543
No 58
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=22.50 E-value=2.8e+02 Score=26.62 Aligned_cols=59 Identities=7% Similarity=0.092 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHcC--CcEEEEEEEeeCcEEEEEEEEEEccCCcc-CHHHHHHHHHHHHHHhh
Q 009555 464 CLLFVSRVLDELQ--LDLHHVAGGHIGDYYSFLFNTKIYEGSSV-YAGSIANKLIEVMDKQY 522 (532)
Q Consensus 464 lLl~VL~aLEeLg--LdVlsAsiS~vg~~vi~tI~aKV~eGs~v-~ae~IkqaL~eaL~~~~ 522 (532)
...+|.+.+++.. .+|.+..+-..|......+++.+.++..+ .+++|.+++.+.+++.+
T Consensus 207 ~~~~i~~~i~~~~~V~~v~~l~~~~~G~~~~v~~hv~v~~~~~~~~~~~i~~~i~~~l~~~~ 268 (283)
T 3h90_A 207 ERQEIIDIVTSWPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRF 268 (283)
T ss_dssp HHHHHHHHHHHSSSCSEEEEEEEEEETTEEEEEEEEECCTTCBHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCCCcccceeeEEEEECCcEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 3456777887764 67888888888887777888888766543 68899999999988765
No 59
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=21.13 E-value=2.3e+02 Score=28.66 Aligned_cols=68 Identities=12% Similarity=0.186 Sum_probs=47.4
Q ss_pred EEEEEEec-CCCChHHHHHHHHHHcCCcEEEEEEEeeCc-EEEEEEEEEEccCCccCHHHHHHHHHHHHHHh
Q 009555 452 VTIKLVQR-KKIDCLLFVSRVLDELQLDLHHVAGGHIGD-YYSFLFNTKIYEGSSVYAGSIANKLIEVMDKQ 521 (532)
Q Consensus 452 V~IkI~C~-kR~GlLl~VL~aLEeLgLdVlsAsiS~vg~-~vi~tI~aKV~eGs~v~ae~IkqaL~eaL~~~ 521 (532)
..|-+.-+ +++|.|.++|.+|...|+.++...+-...+ ..-|.|.+.++ |. +.-..++++|.++-..+
T Consensus 202 TSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e-g~-~~d~~v~~aL~~L~~~~ 271 (313)
T 3mwb_A 202 TTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDAD-GH-ATDSRVADALAGLHRIS 271 (313)
T ss_dssp EEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEE-SC-TTSHHHHHHHHHHHHHC
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEe-CC-CCcHHHHHHHHHHHHhc
Confidence 34445554 799999999999999999999999876543 33466677764 43 23456777777665443
No 60
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=20.30 E-value=2.7e+02 Score=28.68 Aligned_cols=66 Identities=15% Similarity=0.086 Sum_probs=0.0
Q ss_pred EEEEeCCeEEEEEEe---cCCCChHHHHHHHHHHcCCcEEEEEEEeeCcEEEEEEEEEEccCCccCHHHHHHHHHHHH
Q 009555 444 DVRIIDDEVTIKLVQ---RKKIDCLLFVSRVLDELQLDLHHVAGGHIGDYYSFLFNTKIYEGSSVYAGSIANKLIEVM 518 (532)
Q Consensus 444 eVriig~dV~IkI~C---~kR~GlLl~VL~aLEeLgLdVlsAsiS~vg~~vi~tI~aKV~eGs~v~ae~IkqaL~eaL 518 (532)
.|.+.++-..|.|.. ...+|.+.+++++|.+.|+.|. .+++..-.+.+.+..+ +.+...+.|++.+
T Consensus 337 ~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~--~is~Se~~is~vV~~~-------d~~~Av~~Lh~~f 405 (421)
T 3ab4_A 337 NVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIE--LISTSEIRISVLIRED-------DLDAAARALHEQF 405 (421)
T ss_dssp EEEEECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCC--EEEEETTEEEEEEEGG-------GHHHHHHHHHHHT
T ss_pred eEEEeCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEE--EEEcCCCeEEEEEeHH-------HHHHHHHHHHHHH
Done!