Query 009556
Match_columns 532
No_of_seqs 786 out of 2454
Neff 11.2
Searched_HMMs 46136
Date Thu Mar 28 14:32:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009556.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009556hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 1.3E-67 2.8E-72 547.1 58.4 438 74-511 367-861 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 8.9E-67 1.9E-71 540.9 57.2 436 74-509 434-894 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 9.3E-65 2E-69 536.0 43.7 428 73-517 249-677 (857)
4 PLN03081 pentatricopeptide (PP 100.0 1.3E-63 2.7E-68 515.2 45.8 431 73-518 83-515 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 8.9E-64 1.9E-68 528.5 44.7 432 73-517 148-645 (857)
6 PLN03081 pentatricopeptide (PP 100.0 4.9E-60 1.1E-64 488.5 44.7 431 72-519 118-550 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.4E-26 3E-31 250.7 55.3 428 76-517 464-891 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2.9E-26 6.3E-31 248.2 52.7 402 76-490 498-899 (899)
9 PRK11788 tetratricopeptide rep 99.9 2.4E-21 5.1E-26 188.3 34.1 299 193-498 46-354 (389)
10 PRK11447 cellulose synthase su 99.9 4.1E-19 9E-24 193.4 51.9 400 84-495 276-745 (1157)
11 PRK11788 tetratricopeptide rep 99.9 1.6E-20 3.4E-25 182.6 36.5 302 85-393 43-354 (389)
12 TIGR00990 3a0801s09 mitochondr 99.9 2E-18 4.3E-23 176.6 50.7 403 80-491 130-571 (615)
13 PRK11447 cellulose synthase su 99.9 8.6E-18 1.9E-22 183.2 53.3 403 76-491 180-700 (1157)
14 PRK10049 pgaA outer membrane p 99.9 2.7E-18 5.7E-23 178.9 46.8 419 76-507 14-470 (765)
15 PRK15174 Vi polysaccharide exp 99.9 3.3E-18 7.1E-23 174.4 46.0 364 81-454 46-418 (656)
16 PRK15174 Vi polysaccharide exp 99.9 5.7E-18 1.2E-22 172.7 47.1 392 88-489 16-418 (656)
17 KOG4626 O-linked N-acetylgluco 99.9 3.2E-19 7E-24 165.8 34.0 381 77-472 116-500 (966)
18 KOG4626 O-linked N-acetylgluco 99.9 3.5E-19 7.5E-24 165.6 33.6 372 110-498 114-490 (966)
19 TIGR00990 3a0801s09 mitochondr 99.8 2.4E-16 5.1E-21 161.4 47.7 376 74-456 157-571 (615)
20 PRK14574 hmsH outer membrane p 99.8 2E-15 4.4E-20 154.5 49.3 406 87-504 44-524 (822)
21 PRK10049 pgaA outer membrane p 99.8 1.2E-15 2.6E-20 159.1 47.2 382 76-469 48-467 (765)
22 KOG4422 Uncharacterized conser 99.8 1.2E-14 2.6E-19 130.0 42.3 411 77-494 116-593 (625)
23 PRK09782 bacteriophage N4 rece 99.8 2.9E-14 6.2E-19 149.2 48.4 405 74-497 178-710 (987)
24 PRK09782 bacteriophage N4 rece 99.8 1E-13 2.2E-18 145.2 50.1 204 301-514 490-694 (987)
25 KOG4422 Uncharacterized conser 99.8 8.9E-15 1.9E-19 130.8 35.6 340 112-457 207-591 (625)
26 PRK14574 hmsH outer membrane p 99.8 2E-13 4.4E-18 140.0 47.7 382 118-510 40-497 (822)
27 KOG2002 TPR-containing nuclear 99.8 4.7E-14 1E-18 138.7 40.2 428 75-512 268-731 (1018)
28 KOG2002 TPR-containing nuclear 99.7 1.2E-13 2.5E-18 136.0 38.5 407 79-497 309-749 (1018)
29 KOG2003 TPR repeat-containing 99.7 5.9E-14 1.3E-18 126.6 28.5 432 80-520 204-717 (840)
30 COG2956 Predicted N-acetylgluc 99.7 1.4E-13 3.1E-18 119.0 29.5 317 195-529 48-374 (389)
31 KOG2003 TPR repeat-containing 99.7 5.1E-13 1.1E-17 120.6 31.0 392 85-488 245-719 (840)
32 KOG2076 RNA polymerase III tra 99.7 6.4E-12 1.4E-16 123.2 39.3 387 83-484 145-548 (895)
33 KOG0495 HAT repeat protein [RN 99.6 9.6E-11 2.1E-15 110.9 43.7 418 83-511 412-865 (913)
34 KOG2076 RNA polymerase III tra 99.6 2.6E-11 5.7E-16 118.9 41.4 306 75-383 171-509 (895)
35 KOG1155 Anaphase-promoting com 99.6 2.7E-11 5.8E-16 110.1 38.0 383 109-511 161-554 (559)
36 PRK10747 putative protoheme IX 99.6 2E-12 4.4E-17 124.6 33.3 290 160-489 97-388 (398)
37 TIGR00540 hemY_coli hemY prote 99.6 2.2E-12 4.7E-17 125.1 33.1 294 159-489 96-397 (409)
38 KOG1915 Cell cycle control pro 99.6 1.4E-10 3E-15 105.8 41.4 403 76-490 72-535 (677)
39 TIGR00540 hemY_coli hemY prote 99.6 4.5E-12 9.7E-17 122.9 33.4 130 286-418 262-396 (409)
40 PRK10747 putative protoheme IX 99.6 7.8E-12 1.7E-16 120.5 34.4 279 125-416 97-385 (398)
41 PF13429 TPR_15: Tetratricopep 99.6 1.3E-14 2.9E-19 133.5 13.2 261 82-349 13-275 (280)
42 KOG0495 HAT repeat protein [RN 99.6 1E-09 2.2E-14 104.1 45.0 406 75-490 438-879 (913)
43 PF13429 TPR_15: Tetratricopep 99.6 1.2E-14 2.6E-19 133.8 11.9 20 293-312 116-135 (280)
44 KOG1915 Cell cycle control pro 99.6 1.7E-09 3.6E-14 98.9 43.2 383 74-470 104-548 (677)
45 KOG0547 Translocase of outer m 99.5 1.4E-10 3E-15 106.3 34.0 404 79-512 117-582 (606)
46 COG3071 HemY Uncharacterized e 99.5 1.1E-10 2.4E-15 104.6 32.6 292 126-455 98-389 (400)
47 KOG4318 Bicoid mRNA stability 99.5 1.7E-11 3.7E-16 119.7 29.3 84 70-165 18-101 (1088)
48 COG3071 HemY Uncharacterized e 99.5 1.7E-10 3.7E-15 103.4 33.2 292 82-383 87-387 (400)
49 COG2956 Predicted N-acetylgluc 99.5 1.6E-10 3.5E-15 100.4 30.8 268 90-367 48-325 (389)
50 KOG1155 Anaphase-promoting com 99.5 9E-10 2E-14 100.4 36.2 350 87-454 174-534 (559)
51 KOG1126 DNA-binding cell divis 99.5 1.3E-11 2.8E-16 117.3 24.7 286 197-495 334-624 (638)
52 KOG1126 DNA-binding cell divis 99.5 2E-11 4.4E-16 116.1 25.9 281 127-421 334-620 (638)
53 KOG3785 Uncharacterized conser 99.4 1.5E-09 3.2E-14 95.6 30.8 397 88-507 68-504 (557)
54 KOG1173 Anaphase-promoting com 99.4 2.3E-09 5E-14 100.3 32.6 289 178-474 240-534 (611)
55 KOG4318 Bicoid mRNA stability 99.4 3.4E-10 7.4E-15 110.9 27.7 273 98-407 11-286 (1088)
56 TIGR02521 type_IV_pilW type IV 99.4 4.7E-10 1E-14 100.5 26.5 199 76-278 30-229 (234)
57 PRK12370 invasion protein regu 99.4 4.4E-10 9.6E-15 113.3 28.5 268 109-387 253-536 (553)
58 KOG2047 mRNA splicing factor [ 99.4 2.6E-07 5.6E-12 88.1 43.3 127 79-211 140-277 (835)
59 PF13041 PPR_2: PPR repeat fam 99.4 1.7E-12 3.7E-17 83.8 6.4 50 75-124 1-50 (50)
60 TIGR02521 type_IV_pilW type IV 99.4 1E-09 2.2E-14 98.3 27.0 200 112-315 31-231 (234)
61 KOG1173 Anaphase-promoting com 99.4 3.5E-08 7.6E-13 92.6 35.8 415 81-509 53-534 (611)
62 PF13041 PPR_2: PPR repeat fam 99.3 3.3E-12 7.2E-17 82.4 6.6 50 425-474 1-50 (50)
63 KOG1156 N-terminal acetyltrans 99.3 1.1E-07 2.5E-12 90.6 39.1 391 88-493 52-470 (700)
64 PRK12370 invasion protein regu 99.3 1.3E-09 2.7E-14 110.0 28.2 250 232-492 276-536 (553)
65 KOG0547 Translocase of outer m 99.3 3.7E-08 8E-13 90.7 34.2 384 115-515 118-555 (606)
66 KOG2047 mRNA splicing factor [ 99.3 6E-07 1.3E-11 85.7 41.2 408 78-498 103-585 (835)
67 KOG3785 Uncharacterized conser 99.3 2.5E-07 5.3E-12 81.9 34.9 412 72-517 86-541 (557)
68 KOG1129 TPR repeat-containing 99.2 1.4E-09 3E-14 94.8 19.2 236 111-352 222-459 (478)
69 KOG2376 Signal recognition par 99.2 7.5E-07 1.6E-11 84.3 38.4 410 82-515 17-510 (652)
70 KOG1840 Kinesin light chain [C 99.2 1.6E-08 3.5E-13 97.5 28.1 197 258-454 247-477 (508)
71 KOG1156 N-terminal acetyltrans 99.2 8.6E-07 1.9E-11 84.8 38.5 418 78-510 9-452 (700)
72 PF12569 NARP1: NMDA receptor- 99.2 4.9E-08 1.1E-12 95.3 31.4 291 154-454 11-332 (517)
73 KOG1840 Kinesin light chain [C 99.2 9.6E-09 2.1E-13 99.0 25.1 252 256-507 203-501 (508)
74 PF12569 NARP1: NMDA receptor- 99.2 7.8E-08 1.7E-12 93.9 31.5 293 117-419 9-332 (517)
75 KOG1129 TPR repeat-containing 99.2 3.1E-09 6.6E-14 92.7 19.1 230 150-386 226-458 (478)
76 KOG1174 Anaphase-promoting com 99.1 5.5E-06 1.2E-10 75.2 36.9 398 79-497 99-504 (564)
77 PRK11189 lipoprotein NlpI; Pro 99.1 2.1E-07 4.6E-12 86.0 29.0 218 91-317 40-266 (296)
78 KOG4162 Predicted calmodulin-b 99.1 2.1E-06 4.5E-11 84.0 36.1 129 359-490 652-782 (799)
79 KOG1174 Anaphase-promoting com 99.1 1.2E-06 2.7E-11 79.2 31.9 270 143-421 228-500 (564)
80 COG3063 PilF Tfp pilus assembl 99.1 2E-07 4.4E-12 77.8 24.1 198 79-280 37-235 (250)
81 KOG4340 Uncharacterized conser 99.1 5.1E-07 1.1E-11 78.1 27.3 291 80-382 13-335 (459)
82 COG3063 PilF Tfp pilus assembl 99.1 4.8E-07 1E-11 75.6 24.8 197 115-315 38-235 (250)
83 PRK11189 lipoprotein NlpI; Pro 99.0 3.5E-07 7.7E-12 84.5 26.6 218 126-352 40-266 (296)
84 cd05804 StaR_like StaR_like; a 99.0 5.3E-06 1.2E-10 79.6 35.3 23 398-420 270-292 (355)
85 cd05804 StaR_like StaR_like; a 99.0 4.1E-06 9E-11 80.3 33.8 197 79-280 8-214 (355)
86 KOG4162 Predicted calmodulin-b 99.0 1.7E-05 3.7E-10 77.8 36.3 413 88-515 295-772 (799)
87 KOG0548 Molecular co-chaperone 99.0 1.4E-05 3.1E-10 75.2 33.9 91 364-456 365-455 (539)
88 PRK04841 transcriptional regul 99.0 5.4E-06 1.2E-10 90.2 36.9 336 121-456 383-760 (903)
89 PRK04841 transcriptional regul 99.0 9.1E-06 2E-10 88.4 38.1 336 156-491 383-760 (903)
90 KOG4340 Uncharacterized conser 98.9 1.7E-06 3.7E-11 74.9 25.0 326 113-452 11-371 (459)
91 KOG1914 mRNA cleavage and poly 98.9 5E-05 1.1E-09 71.6 36.2 410 75-490 18-500 (656)
92 KOG0985 Vesicle coat protein c 98.9 2.9E-05 6.3E-10 78.3 34.8 321 111-488 983-1305(1666)
93 PF04733 Coatomer_E: Coatomer 98.9 2.3E-07 5E-12 84.4 18.8 247 193-455 12-264 (290)
94 KOG2376 Signal recognition par 98.8 0.00017 3.7E-09 68.9 35.6 387 77-488 46-517 (652)
95 PF04733 Coatomer_E: Coatomer 98.8 2.4E-07 5.3E-12 84.3 15.5 253 84-351 8-265 (290)
96 KOG3616 Selective LIM binding 98.8 1.4E-05 3.1E-10 77.7 27.2 191 261-485 741-931 (1636)
97 KOG3617 WD40 and TPR repeat-co 98.8 0.00013 2.9E-09 72.1 33.9 240 75-348 724-993 (1416)
98 KOG1125 TPR repeat-containing 98.8 2E-06 4.3E-11 81.4 20.8 224 84-314 292-525 (579)
99 PF12854 PPR_1: PPR repeat 98.8 1.5E-08 3.3E-13 58.5 4.2 32 422-453 2-33 (34)
100 PLN02789 farnesyltranstransfer 98.7 2E-05 4.3E-10 72.9 26.8 215 79-299 39-267 (320)
101 KOG1128 Uncharacterized conser 98.7 4.9E-06 1.1E-10 81.0 23.0 241 248-509 394-635 (777)
102 PF12854 PPR_1: PPR repeat 98.7 1.6E-08 3.5E-13 58.4 3.8 33 72-104 2-34 (34)
103 KOG1914 mRNA cleavage and poly 98.7 0.00027 5.8E-09 66.9 37.5 391 109-505 17-480 (656)
104 KOG3616 Selective LIM binding 98.7 1.2E-05 2.5E-10 78.3 24.8 319 82-452 620-962 (1636)
105 KOG0548 Molecular co-chaperone 98.7 0.00014 3.1E-09 68.7 30.9 402 85-509 10-471 (539)
106 KOG3617 WD40 and TPR repeat-co 98.7 4.8E-05 1E-09 75.1 28.4 242 109-384 723-994 (1416)
107 PRK10370 formate-dependent nit 98.6 7.2E-06 1.6E-10 70.5 19.6 139 370-513 52-193 (198)
108 KOG0624 dsRNA-activated protei 98.6 0.0003 6.4E-09 62.7 30.1 309 81-421 42-370 (504)
109 KOG1070 rRNA processing protei 98.6 3.1E-05 6.6E-10 80.8 26.5 207 110-320 1456-1667(1710)
110 KOG0985 Vesicle coat protein c 98.6 0.00047 1E-08 70.0 33.4 261 75-381 982-1244(1666)
111 KOG0624 dsRNA-activated protei 98.6 0.00033 7.2E-09 62.4 31.3 313 145-490 36-369 (504)
112 KOG1070 rRNA processing protei 98.6 4.4E-05 9.5E-10 79.7 26.5 204 217-424 1458-1666(1710)
113 KOG1127 TPR repeat-containing 98.6 0.0003 6.5E-09 71.3 31.4 396 78-483 493-944 (1238)
114 PLN02789 farnesyltranstransfer 98.6 0.00015 3.2E-09 67.2 27.5 127 187-316 42-171 (320)
115 KOG1125 TPR repeat-containing 98.6 1.4E-05 3E-10 76.0 20.3 250 228-484 296-564 (579)
116 TIGR03302 OM_YfiO outer membra 98.5 2.6E-05 5.7E-10 69.8 21.0 187 74-281 30-232 (235)
117 KOG3081 Vesicle coat complex C 98.5 0.00015 3.2E-09 62.4 23.1 256 77-351 10-271 (299)
118 KOG1128 Uncharacterized conser 98.5 0.0002 4.3E-09 70.2 26.4 233 185-438 401-634 (777)
119 TIGR03302 OM_YfiO outer membra 98.5 3.2E-05 6.8E-10 69.3 20.3 187 110-316 31-232 (235)
120 COG5010 TadD Flp pilus assembl 98.5 1.7E-05 3.7E-10 68.0 16.7 161 116-280 70-230 (257)
121 COG5010 TadD Flp pilus assembl 98.5 5.6E-05 1.2E-09 64.9 19.7 123 115-240 103-225 (257)
122 PRK14720 transcript cleavage f 98.5 0.00031 6.8E-09 72.7 28.4 170 74-281 28-198 (906)
123 PRK15179 Vi polysaccharide bio 98.4 0.00022 4.8E-09 73.0 26.6 182 109-300 83-268 (694)
124 PRK14720 transcript cleavage f 98.4 0.00018 3.9E-09 74.4 25.2 170 110-316 29-198 (906)
125 PRK10370 formate-dependent nit 98.4 2.4E-05 5.2E-10 67.2 16.2 120 125-247 52-174 (198)
126 KOG1127 TPR repeat-containing 98.4 0.00078 1.7E-08 68.5 28.2 130 114-245 494-624 (1238)
127 PRK15359 type III secretion sy 98.4 2.4E-05 5.3E-10 63.5 15.2 95 80-176 27-121 (144)
128 PRK15179 Vi polysaccharide bio 98.3 0.00025 5.4E-09 72.6 24.7 188 319-516 83-271 (694)
129 PRK15359 type III secretion sy 98.3 6E-05 1.3E-09 61.2 16.4 108 98-211 14-121 (144)
130 KOG3081 Vesicle coat complex C 98.3 0.00082 1.8E-08 58.0 23.3 250 119-385 15-270 (299)
131 TIGR00756 PPR pentatricopeptid 98.3 1.3E-06 2.9E-11 51.3 4.3 33 79-111 2-34 (35)
132 TIGR02552 LcrH_SycD type III s 98.3 4.6E-05 1E-09 61.4 14.2 108 393-504 18-125 (135)
133 TIGR02552 LcrH_SycD type III s 98.2 8.8E-05 1.9E-09 59.8 14.8 96 114-211 19-114 (135)
134 KOG2053 Mitochondrial inherita 98.2 0.011 2.3E-07 60.0 43.0 191 88-282 54-256 (932)
135 COG4783 Putative Zn-dependent 98.2 0.0012 2.5E-08 62.1 22.8 184 73-281 270-454 (484)
136 KOG3060 Uncharacterized conser 98.2 0.0023 4.9E-08 54.9 22.4 188 265-456 25-220 (289)
137 PF13812 PPR_3: Pentatricopept 98.2 4.4E-06 9.5E-11 48.6 4.5 33 78-110 2-34 (34)
138 COG4783 Putative Zn-dependent 98.1 0.0015 3.2E-08 61.5 22.7 156 332-509 316-474 (484)
139 TIGR00756 PPR pentatricopeptid 98.1 4.7E-06 1E-10 48.9 4.5 33 429-461 2-34 (35)
140 KOG3060 Uncharacterized conser 98.1 0.0041 9E-08 53.4 22.6 185 163-352 28-221 (289)
141 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00014 3E-09 68.7 15.7 122 82-209 174-295 (395)
142 PF13812 PPR_3: Pentatricopept 98.1 6.7E-06 1.5E-10 47.8 4.4 33 428-460 2-34 (34)
143 KOG2053 Mitochondrial inherita 98.0 0.024 5.2E-07 57.6 39.8 398 86-500 18-511 (932)
144 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00037 8.1E-09 65.9 16.1 123 186-314 173-295 (395)
145 PF01535 PPR: PPR repeat; Int 98.0 9.5E-06 2.1E-10 46.0 3.5 31 78-108 1-31 (31)
146 PF09976 TPR_21: Tetratricopep 98.0 0.00074 1.6E-08 55.0 16.0 125 79-207 14-143 (145)
147 PF10037 MRP-S27: Mitochondria 97.9 0.00023 4.9E-09 67.6 13.7 124 107-230 61-186 (429)
148 PF09976 TPR_21: Tetratricopep 97.9 0.00081 1.8E-08 54.8 15.3 51 399-451 92-142 (145)
149 PF08579 RPM2: Mitochondrial r 97.9 0.00023 5E-09 52.7 9.9 79 81-159 29-116 (120)
150 PF10037 MRP-S27: Mitochondria 97.9 0.0002 4.4E-09 67.9 12.2 124 317-440 61-186 (429)
151 cd00189 TPR Tetratricopeptide 97.9 0.00034 7.3E-09 52.0 11.4 94 80-175 3-96 (100)
152 KOG2041 WD40 repeat protein [G 97.9 0.029 6.2E-07 55.3 26.2 350 109-497 689-1092(1189)
153 KOG2041 WD40 repeat protein [G 97.9 0.036 7.8E-07 54.7 27.1 120 73-207 688-821 (1189)
154 PF01535 PPR: PPR repeat; Int 97.8 2.8E-05 6E-10 44.0 3.1 29 429-457 2-30 (31)
155 PF08579 RPM2: Mitochondrial r 97.8 0.00042 9.1E-09 51.4 9.7 78 116-193 29-115 (120)
156 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.0022 4.7E-08 50.1 13.8 97 79-177 4-106 (119)
157 PRK10866 outer membrane biogen 97.7 0.036 7.8E-07 49.4 23.1 60 82-142 37-99 (243)
158 cd00189 TPR Tetratricopeptide 97.7 0.00096 2.1E-08 49.4 11.3 94 115-210 3-96 (100)
159 PLN03088 SGT1, suppressor of 97.7 0.0016 3.5E-08 61.8 14.8 93 83-177 8-100 (356)
160 PF06239 ECSIT: Evolutionarily 97.6 0.0013 2.7E-08 55.4 12.0 95 391-488 46-161 (228)
161 PRK02603 photosystem I assembl 97.6 0.0032 6.9E-08 53.0 14.8 92 76-168 34-127 (172)
162 PF12895 Apc3: Anaphase-promot 97.6 0.00014 3.1E-09 52.8 5.7 81 90-172 2-83 (84)
163 PLN03088 SGT1, suppressor of 97.6 0.002 4.4E-08 61.2 14.3 89 365-455 10-98 (356)
164 PF05843 Suf: Suppressor of fo 97.6 0.0016 3.5E-08 59.5 13.0 131 78-211 2-136 (280)
165 PRK15363 pathogenicity island 97.6 0.0022 4.8E-08 51.4 12.0 92 82-175 40-131 (157)
166 KOG2280 Vacuolar assembly/sort 97.5 0.12 2.6E-06 51.7 26.0 340 105-485 425-793 (829)
167 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.0052 1.1E-07 48.0 13.8 98 114-211 4-105 (119)
168 PF06239 ECSIT: Evolutionarily 97.5 0.003 6.6E-08 53.2 12.5 51 109-159 44-99 (228)
169 KOG0553 TPR repeat-containing 97.5 0.0019 4.1E-08 57.0 11.6 96 87-186 91-186 (304)
170 PF05843 Suf: Suppressor of fo 97.5 0.0032 6.9E-08 57.6 13.8 131 113-246 2-136 (280)
171 CHL00033 ycf3 photosystem I as 97.5 0.0053 1.1E-07 51.5 14.2 95 76-171 34-137 (168)
172 PF12895 Apc3: Anaphase-promot 97.5 0.00025 5.5E-09 51.4 5.1 79 406-486 3-82 (84)
173 PRK02603 photosystem I assembl 97.4 0.0079 1.7E-07 50.6 14.8 82 360-442 38-121 (172)
174 PF14938 SNAP: Soluble NSF att 97.4 0.018 3.8E-07 53.0 17.8 174 77-281 35-225 (282)
175 CHL00033 ycf3 photosystem I as 97.4 0.0067 1.5E-07 50.9 13.8 114 93-207 15-138 (168)
176 PRK10866 outer membrane biogen 97.4 0.09 2E-06 46.9 23.3 74 117-191 37-113 (243)
177 PF14938 SNAP: Soluble NSF att 97.4 0.038 8.2E-07 50.8 19.4 113 188-315 100-224 (282)
178 PF14559 TPR_19: Tetratricopep 97.3 0.00095 2.1E-08 46.1 6.7 61 88-151 2-62 (68)
179 PRK15363 pathogenicity island 97.3 0.0067 1.5E-07 48.7 11.8 95 115-211 38-132 (157)
180 PRK10153 DNA-binding transcrip 97.3 0.017 3.6E-07 57.6 17.1 70 426-499 419-488 (517)
181 PF12688 TPR_5: Tetratrico pep 97.2 0.037 8E-07 42.8 14.7 90 84-175 8-103 (120)
182 KOG0553 TPR repeat-containing 97.2 0.0046 9.9E-08 54.6 10.7 97 367-467 91-187 (304)
183 PRK10153 DNA-binding transcrip 97.2 0.033 7.1E-07 55.5 18.1 137 108-247 333-483 (517)
184 PF13525 YfiO: Outer membrane 97.2 0.1 2.2E-06 45.2 19.1 59 83-141 11-71 (203)
185 COG4700 Uncharacterized protei 97.2 0.098 2.1E-06 43.0 18.6 127 83-211 62-189 (251)
186 COG4235 Cytochrome c biogenesi 97.1 0.03 6.4E-07 49.9 15.2 101 389-491 153-256 (287)
187 PF13432 TPR_16: Tetratricopep 97.1 0.0025 5.4E-08 43.5 6.9 57 84-141 4-60 (65)
188 PF13414 TPR_11: TPR repeat; P 97.1 0.0029 6.3E-08 43.7 7.2 64 76-140 2-66 (69)
189 PF12688 TPR_5: Tetratrico pep 97.1 0.05 1.1E-06 42.1 14.2 93 118-210 7-103 (120)
190 PF14559 TPR_19: Tetratricopep 97.0 0.0021 4.6E-08 44.3 5.9 51 404-455 3-53 (68)
191 KOG0550 Molecular chaperone (D 97.0 0.13 2.8E-06 47.8 18.4 86 402-491 259-350 (486)
192 PF13432 TPR_16: Tetratricopep 97.0 0.0024 5.1E-08 43.6 6.0 55 400-455 5-59 (65)
193 KOG1130 Predicted G-alpha GTPa 97.0 0.0096 2.1E-07 54.8 11.1 264 86-350 26-343 (639)
194 COG4235 Cytochrome c biogenesi 96.9 0.074 1.6E-06 47.5 15.8 101 144-246 153-256 (287)
195 KOG0550 Molecular chaperone (D 96.9 0.35 7.5E-06 45.1 23.0 282 77-386 49-350 (486)
196 PF04840 Vps16_C: Vps16, C-ter 96.9 0.35 7.6E-06 44.9 27.6 107 324-450 179-285 (319)
197 PF13525 YfiO: Outer membrane 96.9 0.16 3.4E-06 44.0 17.8 60 117-176 10-71 (203)
198 COG4700 Uncharacterized protei 96.9 0.18 3.9E-06 41.5 17.6 92 327-420 94-188 (251)
199 COG5107 RNA14 Pre-mRNA 3'-end 96.9 0.43 9.3E-06 45.0 32.3 423 75-509 40-547 (660)
200 PF13414 TPR_11: TPR repeat; P 96.8 0.0064 1.4E-07 42.0 7.0 64 111-175 2-66 (69)
201 KOG2796 Uncharacterized conser 96.8 0.3 6.5E-06 42.6 18.9 145 304-456 166-315 (366)
202 KOG1130 Predicted G-alpha GTPa 96.8 0.016 3.4E-07 53.5 10.6 132 323-454 196-342 (639)
203 PRK10803 tol-pal system protei 96.8 0.03 6.5E-07 50.3 12.3 94 395-490 146-245 (263)
204 PRK10803 tol-pal system protei 96.8 0.035 7.6E-07 49.9 12.7 97 78-176 144-246 (263)
205 KOG1538 Uncharacterized conser 96.7 0.044 9.5E-07 53.6 13.7 258 215-493 554-848 (1081)
206 PF03704 BTAD: Bacterial trans 96.7 0.014 3.1E-07 47.5 9.4 73 430-503 65-142 (146)
207 PF13371 TPR_9: Tetratricopept 96.7 0.016 3.6E-07 40.4 8.1 57 85-142 3-59 (73)
208 PF03704 BTAD: Bacterial trans 96.6 0.014 3E-07 47.6 8.7 56 117-173 67-122 (146)
209 KOG2114 Vacuolar assembly/sort 96.6 0.99 2.1E-05 46.2 22.7 178 79-279 336-517 (933)
210 KOG1538 Uncharacterized conser 96.5 0.91 2E-05 45.0 20.9 40 200-242 618-657 (1081)
211 PF13371 TPR_9: Tetratricopept 96.5 0.015 3.3E-07 40.6 7.1 54 436-490 4-57 (73)
212 PF04840 Vps16_C: Vps16, C-ter 96.5 0.76 1.6E-05 42.8 31.2 283 79-419 2-289 (319)
213 KOG1585 Protein required for f 96.3 0.6 1.3E-05 40.4 17.4 206 78-310 32-250 (308)
214 PF12921 ATP13: Mitochondrial 96.3 0.07 1.5E-06 41.7 10.1 84 391-474 1-100 (126)
215 PRK15331 chaperone protein Sic 96.2 0.2 4.4E-06 40.7 12.5 90 85-176 45-134 (165)
216 PF12921 ATP13: Mitochondrial 96.2 0.14 3.1E-06 40.0 11.5 46 390-435 50-96 (126)
217 PRK15331 chaperone protein Sic 96.2 0.14 3.1E-06 41.5 11.4 87 402-490 47-133 (165)
218 PF13281 DUF4071: Domain of un 96.1 1.3 2.8E-05 41.8 20.5 184 292-505 146-346 (374)
219 PF13424 TPR_12: Tetratricopep 96.0 0.015 3.3E-07 41.3 5.0 61 429-489 7-73 (78)
220 PF13424 TPR_12: Tetratricopep 95.9 0.019 4.2E-07 40.7 5.2 62 78-139 6-73 (78)
221 COG3118 Thioredoxin domain-con 95.9 0.9 1.9E-05 40.7 15.8 50 89-139 146-195 (304)
222 smart00299 CLH Clathrin heavy 95.8 0.76 1.6E-05 37.0 15.8 126 80-228 10-136 (140)
223 PF04053 Coatomer_WDAD: Coatom 95.8 0.28 6E-06 47.9 14.0 158 85-278 269-428 (443)
224 PLN03098 LPA1 LOW PSII ACCUMUL 95.7 0.61 1.3E-05 44.7 15.2 64 76-141 74-141 (453)
225 KOG3941 Intermediate in Toll s 95.7 0.2 4.3E-06 44.1 11.0 121 70-209 60-186 (406)
226 PF07079 DUF1347: Protein of u 95.6 2.3 4.9E-05 40.6 41.3 413 77-506 46-534 (549)
227 KOG1258 mRNA processing protei 95.5 2.8 6.1E-05 41.4 36.5 134 75-211 43-180 (577)
228 COG5107 RNA14 Pre-mRNA 3'-end 95.5 2.4 5.1E-05 40.4 31.4 145 323-472 398-545 (660)
229 KOG2796 Uncharacterized conser 95.5 1.6 3.5E-05 38.3 22.3 130 186-316 181-315 (366)
230 COG3898 Uncharacterized membra 95.5 2.2 4.8E-05 39.8 30.4 127 363-497 269-398 (531)
231 COG3898 Uncharacterized membra 95.5 2.2 4.8E-05 39.8 31.2 290 150-456 85-392 (531)
232 KOG0543 FKBP-type peptidyl-pro 95.4 0.35 7.7E-06 45.1 12.3 90 85-175 216-319 (397)
233 PF10300 DUF3808: Protein of u 95.4 1.1 2.4E-05 44.4 16.8 161 327-490 193-375 (468)
234 KOG3941 Intermediate in Toll s 95.4 0.21 4.6E-06 44.0 10.0 71 407-477 87-173 (406)
235 PLN03098 LPA1 LOW PSII ACCUMUL 95.4 0.34 7.4E-06 46.3 12.3 66 109-176 72-141 (453)
236 smart00299 CLH Clathrin heavy 95.4 1.2 2.5E-05 35.9 14.7 43 117-160 12-54 (140)
237 PF13170 DUF4003: Protein of u 95.1 2.4 5.2E-05 39.0 16.8 130 93-224 78-224 (297)
238 PF04053 Coatomer_WDAD: Coatom 95.1 0.45 9.8E-06 46.4 12.8 132 78-242 296-427 (443)
239 KOG1585 Protein required for f 95.1 2.1 4.5E-05 37.2 14.9 25 254-278 93-117 (308)
240 PF10300 DUF3808: Protein of u 95.0 1.9 4.1E-05 42.8 17.2 162 150-314 191-374 (468)
241 PF09205 DUF1955: Domain of un 95.0 1.3 2.8E-05 34.4 15.0 63 395-458 89-151 (161)
242 KOG2610 Uncharacterized conser 95.0 0.75 1.6E-05 41.7 12.5 155 298-454 114-274 (491)
243 PF08631 SPO22: Meiosis protei 95.0 2.9 6.3E-05 38.3 26.3 123 88-211 4-150 (278)
244 COG4105 ComL DNA uptake lipopr 94.9 2.4 5.3E-05 37.3 22.0 82 75-158 33-117 (254)
245 KOG4555 TPR repeat-containing 94.8 0.74 1.6E-05 35.5 10.4 91 86-177 52-145 (175)
246 PF13281 DUF4071: Domain of un 94.8 3.8 8.2E-05 38.8 21.9 75 222-296 146-226 (374)
247 KOG2610 Uncharacterized conser 94.6 1.2 2.7E-05 40.4 12.9 164 263-429 114-285 (491)
248 KOG4555 TPR repeat-containing 94.5 0.97 2.1E-05 34.9 10.4 91 121-212 52-145 (175)
249 PRK11906 transcriptional regul 94.3 5.4 0.00012 38.5 17.2 117 93-211 274-401 (458)
250 PF13428 TPR_14: Tetratricopep 94.2 0.21 4.5E-06 30.6 5.5 39 79-118 3-41 (44)
251 COG3629 DnrI DNA-binding trans 94.2 0.64 1.4E-05 41.8 10.5 79 428-507 154-237 (280)
252 PF09205 DUF1955: Domain of un 94.1 2.2 4.7E-05 33.2 15.2 63 185-248 89-151 (161)
253 COG3118 Thioredoxin domain-con 94.0 4.4 9.5E-05 36.5 17.6 29 251-279 235-263 (304)
254 KOG1920 IkappaB kinase complex 93.9 11 0.00024 40.7 28.1 86 358-455 940-1027(1265)
255 COG1729 Uncharacterized protei 93.6 2.2 4.8E-05 37.9 12.4 96 79-176 144-244 (262)
256 PF07035 Mic1: Colon cancer-as 93.4 3.9 8.3E-05 33.8 15.4 134 98-245 15-148 (167)
257 COG4105 ComL DNA uptake lipopr 93.4 5.3 0.00012 35.2 20.9 71 123-193 45-117 (254)
258 PF13170 DUF4003: Protein of u 93.2 6.9 0.00015 36.1 19.5 128 199-328 79-223 (297)
259 PF13428 TPR_14: Tetratricopep 93.2 0.37 8.1E-06 29.5 5.3 28 114-141 3-30 (44)
260 PF08631 SPO22: Meiosis protei 93.1 6.9 0.00015 35.8 24.8 165 323-489 85-273 (278)
261 PF10602 RPN7: 26S proteasome 93.0 1.6 3.5E-05 36.7 10.6 64 77-140 36-101 (177)
262 PF13512 TPR_18: Tetratricopep 92.9 4 8.6E-05 32.5 12.4 81 78-159 12-94 (142)
263 COG3629 DnrI DNA-binding trans 92.9 1.4 3.1E-05 39.7 10.4 82 112-194 153-239 (280)
264 COG4649 Uncharacterized protei 92.8 4.7 0.0001 33.1 13.7 53 88-140 69-122 (221)
265 KOG1258 mRNA processing protei 92.8 11 0.00025 37.4 33.8 367 88-476 90-489 (577)
266 PF04184 ST7: ST7 protein; In 92.7 11 0.00023 36.9 17.4 56 363-418 265-321 (539)
267 COG1729 Uncharacterized protei 92.7 2.6 5.6E-05 37.4 11.5 14 197-210 156-169 (262)
268 PRK11906 transcriptional regul 92.5 3.8 8.1E-05 39.6 13.2 115 90-207 317-432 (458)
269 KOG1920 IkappaB kinase complex 92.4 19 0.00041 39.1 21.0 31 144-175 788-820 (1265)
270 PF13176 TPR_7: Tetratricopept 92.4 0.35 7.5E-06 28.0 4.1 24 80-103 2-25 (36)
271 KOG2114 Vacuolar assembly/sort 92.3 16 0.00035 38.0 19.4 142 84-243 375-516 (933)
272 KOG2280 Vacuolar assembly/sort 92.2 15 0.00033 37.6 30.5 90 390-489 682-771 (829)
273 PF09613 HrpB1_HrpK: Bacterial 92.2 5.5 0.00012 32.4 12.4 50 404-455 22-72 (160)
274 PF07035 Mic1: Colon cancer-as 92.1 5.9 0.00013 32.7 15.3 21 292-312 94-114 (167)
275 KOG0543 FKBP-type peptidyl-pro 91.9 2.1 4.5E-05 40.2 10.5 97 77-175 257-354 (397)
276 COG0457 NrfG FOG: TPR repeat [ 91.7 8.2 0.00018 33.5 29.1 167 253-420 60-230 (291)
277 PF13512 TPR_18: Tetratricopep 91.7 5.7 0.00012 31.7 12.0 79 118-196 16-96 (142)
278 PF10602 RPN7: 26S proteasome 91.7 3.3 7.2E-05 34.8 10.8 60 395-454 39-100 (177)
279 COG0457 NrfG FOG: TPR repeat [ 91.4 9.1 0.0002 33.3 29.8 189 126-315 37-230 (291)
280 COG4649 Uncharacterized protei 91.0 7.8 0.00017 31.9 14.2 122 159-280 70-195 (221)
281 PF00637 Clathrin: Region in C 91.0 0.0046 9.9E-08 50.3 -6.8 52 365-416 15-66 (143)
282 PF13176 TPR_7: Tetratricopept 90.9 0.63 1.4E-05 26.9 4.2 24 430-453 2-25 (36)
283 KOG1941 Acetylcholine receptor 90.8 7.5 0.00016 36.1 12.5 125 223-348 128-272 (518)
284 PF04184 ST7: ST7 protein; In 90.8 17 0.00037 35.5 17.7 164 81-259 172-338 (539)
285 PF04097 Nic96: Nup93/Nic96; 90.1 26 0.00055 36.4 19.6 220 76-316 111-356 (613)
286 cd00923 Cyt_c_Oxidase_Va Cytoc 90.1 2.6 5.6E-05 30.7 7.2 45 445-489 25-69 (103)
287 PF13431 TPR_17: Tetratricopep 89.2 0.55 1.2E-05 26.8 2.9 24 109-132 10-33 (34)
288 PF02284 COX5A: Cytochrome c o 89.0 2.2 4.8E-05 31.4 6.4 41 449-489 32-72 (108)
289 KOG0276 Vesicle coat complex C 88.8 4 8.7E-05 40.4 9.8 26 252-277 666-691 (794)
290 KOG4570 Uncharacterized conser 88.7 7 0.00015 35.5 10.5 103 247-351 59-164 (418)
291 KOG4570 Uncharacterized conser 88.6 9.4 0.0002 34.7 11.2 48 407-454 115-162 (418)
292 PF13929 mRNA_stabil: mRNA sta 88.1 14 0.00031 33.3 12.1 146 115-263 134-289 (292)
293 PF07575 Nucleopor_Nup85: Nup8 88.1 18 0.0004 37.1 14.9 156 358-517 373-550 (566)
294 PF09613 HrpB1_HrpK: Bacterial 87.8 14 0.0003 30.2 13.3 68 88-159 21-89 (160)
295 KOG2066 Vacuolar assembly/sort 87.7 38 0.00082 35.2 30.1 104 82-194 361-467 (846)
296 COG2909 MalT ATP-dependent tra 87.3 43 0.00093 35.4 22.4 226 262-487 425-684 (894)
297 PF00515 TPR_1: Tetratricopept 86.8 1.1 2.5E-05 25.2 3.3 27 429-455 3-29 (34)
298 PF13431 TPR_17: Tetratricopep 86.7 0.87 1.9E-05 26.0 2.7 24 144-167 10-33 (34)
299 cd00923 Cyt_c_Oxidase_Va Cytoc 86.7 6.6 0.00014 28.7 7.5 48 303-350 23-70 (103)
300 PF00515 TPR_1: Tetratricopept 86.7 2 4.3E-05 24.2 4.3 28 79-106 3-30 (34)
301 COG4455 ImpE Protein of avirul 86.3 6.4 0.00014 33.7 8.4 76 80-156 4-81 (273)
302 KOG4648 Uncharacterized conser 85.8 5.5 0.00012 36.5 8.3 90 84-175 104-193 (536)
303 PF07719 TPR_2: Tetratricopept 85.8 1.4 3E-05 24.8 3.3 27 429-455 3-29 (34)
304 PF13374 TPR_10: Tetratricopep 85.8 2.3 5E-05 25.2 4.5 27 428-454 3-29 (42)
305 KOG0276 Vesicle coat complex C 85.7 16 0.00034 36.5 11.8 166 74-279 578-748 (794)
306 COG4785 NlpI Lipoprotein NlpI, 85.6 23 0.00049 30.6 14.0 159 112-281 99-266 (297)
307 PF07575 Nucleopor_Nup85: Nup8 85.6 35 0.00076 35.1 15.3 74 308-383 391-464 (566)
308 PF13374 TPR_10: Tetratricopep 85.2 2.2 4.8E-05 25.3 4.2 26 79-104 4-29 (42)
309 TIGR03504 FimV_Cterm FimV C-te 84.7 1.2 2.6E-05 27.2 2.7 23 433-455 5-27 (44)
310 PF07719 TPR_2: Tetratricopept 84.7 2.8 6.1E-05 23.4 4.3 27 80-106 4-30 (34)
311 PF11207 DUF2989: Protein of u 84.6 12 0.00026 31.9 9.3 74 408-482 122-198 (203)
312 KOG2297 Predicted translation 84.3 32 0.0007 31.3 18.9 20 428-447 322-341 (412)
313 PRK09687 putative lyase; Provi 83.4 36 0.00079 31.2 27.8 121 216-350 141-262 (280)
314 KOG4234 TPR repeat-containing 82.9 21 0.00045 30.3 9.8 107 93-212 88-198 (271)
315 PF02284 COX5A: Cytochrome c o 82.8 10 0.00022 28.1 7.1 61 409-470 27-87 (108)
316 PRK09687 putative lyase; Provi 82.8 38 0.00083 31.0 29.3 146 180-337 66-221 (280)
317 PF11207 DUF2989: Protein of u 82.2 22 0.00048 30.3 10.0 78 123-202 118-198 (203)
318 KOG1941 Acetylcholine receptor 82.0 45 0.00098 31.3 17.7 127 328-454 128-273 (518)
319 KOG1550 Extracellular protein 81.6 67 0.0015 32.9 26.4 180 163-352 228-427 (552)
320 TIGR02561 HrpB1_HrpK type III 81.2 27 0.00058 28.1 12.1 53 88-142 21-74 (153)
321 COG3947 Response regulator con 80.7 44 0.00095 30.3 17.0 57 222-279 284-340 (361)
322 TIGR02561 HrpB1_HrpK type III 80.4 29 0.00062 28.0 11.3 50 370-421 23-73 (153)
323 PF00637 Clathrin: Region in C 80.2 0.59 1.3E-05 37.8 0.2 82 83-171 13-94 (143)
324 KOG2396 HAT (Half-A-TPR) repea 79.8 65 0.0014 31.7 35.0 75 76-152 104-179 (568)
325 COG1747 Uncharacterized N-term 79.7 66 0.0014 31.8 21.4 181 74-262 63-249 (711)
326 COG3947 Response regulator con 79.7 48 0.001 30.1 15.9 72 429-501 281-357 (361)
327 TIGR03504 FimV_Cterm FimV C-te 79.4 5 0.00011 24.5 4.0 22 398-419 5-26 (44)
328 KOG2063 Vacuolar assembly/sort 78.6 1E+02 0.0022 33.2 17.1 39 226-264 600-638 (877)
329 KOG0890 Protein kinase of the 78.3 1.6E+02 0.0035 35.4 23.4 321 152-491 1388-1731(2382)
330 KOG4234 TPR repeat-containing 78.3 27 0.00059 29.7 9.1 88 297-386 105-197 (271)
331 PF04097 Nic96: Nup93/Nic96; 78.2 91 0.002 32.5 17.1 22 434-455 421-442 (613)
332 PF07163 Pex26: Pex26 protein; 77.8 25 0.00055 31.6 9.3 87 294-380 90-181 (309)
333 PRK11619 lytic murein transgly 77.6 97 0.0021 32.4 29.5 145 78-233 35-179 (644)
334 COG5159 RPN6 26S proteasome re 77.3 56 0.0012 29.5 11.3 23 292-314 130-152 (421)
335 COG4455 ImpE Protein of avirul 77.3 22 0.00048 30.7 8.4 75 115-190 4-80 (273)
336 PF02259 FAT: FAT domain; Int 76.9 68 0.0015 30.4 22.0 26 289-314 148-173 (352)
337 PF07079 DUF1347: Protein of u 76.8 76 0.0017 30.9 40.8 415 87-512 16-510 (549)
338 KOG1550 Extracellular protein 76.6 95 0.0021 31.9 27.3 113 93-212 228-358 (552)
339 PF13181 TPR_8: Tetratricopept 76.2 8.8 0.00019 21.3 4.4 27 429-455 3-29 (34)
340 COG2909 MalT ATP-dependent tra 76.0 1.1E+02 0.0025 32.5 24.3 316 199-520 298-680 (894)
341 COG1747 Uncharacterized N-term 75.5 88 0.0019 31.0 25.2 166 144-316 63-234 (711)
342 PF02259 FAT: FAT domain; Int 75.5 75 0.0016 30.1 24.6 66 320-385 144-212 (352)
343 PF13929 mRNA_stabil: mRNA sta 74.9 67 0.0015 29.2 16.5 116 197-312 143-263 (292)
344 PF07721 TPR_4: Tetratricopept 74.6 5.5 0.00012 20.9 3.0 20 82-101 6-25 (26)
345 KOG4077 Cytochrome c oxidase, 74.3 20 0.00043 27.8 6.7 37 453-489 75-111 (149)
346 COG2976 Uncharacterized protei 74.2 54 0.0012 27.9 15.6 97 399-502 96-197 (207)
347 PF13174 TPR_6: Tetratricopept 73.7 5.8 0.00013 21.8 3.2 24 83-106 6-29 (33)
348 KOG2063 Vacuolar assembly/sort 72.9 1.4E+02 0.0031 32.2 21.3 57 80-140 310-374 (877)
349 PF07163 Pex26: Pex26 protein; 72.1 56 0.0012 29.5 9.9 57 189-245 90-146 (309)
350 PRK15180 Vi polysaccharide bio 71.9 38 0.00083 32.9 9.5 24 474-497 788-811 (831)
351 PF13181 TPR_8: Tetratricopept 71.8 12 0.00026 20.8 4.2 28 79-106 3-30 (34)
352 KOG2471 TPR repeat-containing 71.6 62 0.0013 31.7 10.8 44 429-474 338-381 (696)
353 COG2976 Uncharacterized protei 71.3 64 0.0014 27.4 14.6 55 190-246 134-188 (207)
354 PF10345 Cohesin_load: Cohesin 70.9 1.4E+02 0.003 31.2 40.5 170 73-243 55-251 (608)
355 KOG4648 Uncharacterized conser 70.8 22 0.00048 32.8 7.4 46 366-413 106-152 (536)
356 PF11848 DUF3368: Domain of un 69.8 20 0.00044 22.3 5.1 37 84-120 9-45 (48)
357 PHA02875 ankyrin repeat protei 69.7 1.2E+02 0.0025 29.8 14.3 210 84-322 6-230 (413)
358 PF02607 B12-binding_2: B12 bi 69.6 26 0.00057 24.5 6.5 54 473-526 12-65 (79)
359 PHA02875 ankyrin repeat protei 68.2 89 0.0019 30.5 12.1 76 227-310 9-88 (413)
360 PF11848 DUF3368: Domain of un 68.0 22 0.00047 22.2 5.0 34 472-505 12-45 (48)
361 PRK10564 maltose regulon perip 68.0 11 0.00024 34.2 5.0 42 74-115 253-295 (303)
362 TIGR02508 type_III_yscG type I 66.5 51 0.0011 24.5 7.1 51 436-492 48-98 (115)
363 PF06552 TOM20_plant: Plant sp 66.4 78 0.0017 26.6 10.6 66 93-159 7-81 (186)
364 COG0735 Fur Fe2+/Zn2+ uptake r 65.6 52 0.0011 26.6 8.1 63 449-512 8-70 (145)
365 PRK11619 lytic murein transgly 65.3 1.8E+02 0.004 30.5 34.2 168 268-451 295-463 (644)
366 PF13762 MNE1: Mitochondrial s 65.0 72 0.0016 25.7 9.2 82 79-160 41-128 (145)
367 PF14853 Fis1_TPR_C: Fis1 C-te 64.8 23 0.0005 22.7 4.7 35 468-504 7-41 (53)
368 KOG0403 Neoplastic transformat 64.8 1.4E+02 0.0031 29.0 20.5 74 396-474 513-586 (645)
369 PF10579 Rapsyn_N: Rapsyn N-te 64.6 17 0.00037 25.5 4.3 46 439-484 18-65 (80)
370 PF11663 Toxin_YhaV: Toxin wit 64.3 7.2 0.00016 30.5 2.7 32 439-472 107-138 (140)
371 PF14669 Asp_Glu_race_2: Putat 64.0 90 0.002 26.5 13.3 67 72-138 3-77 (233)
372 PF06552 TOM20_plant: Plant sp 63.6 23 0.0005 29.6 5.6 115 373-496 7-141 (186)
373 KOG4077 Cytochrome c oxidase, 62.8 57 0.0012 25.4 7.1 46 306-351 68-113 (149)
374 KOG4567 GTPase-activating prot 61.4 81 0.0018 28.9 8.9 88 412-508 263-360 (370)
375 COG4785 NlpI Lipoprotein NlpI, 61.3 1.1E+02 0.0024 26.6 17.2 64 147-211 99-162 (297)
376 KOG2066 Vacuolar assembly/sort 60.6 2.3E+02 0.0049 29.9 27.4 102 119-229 363-467 (846)
377 smart00028 TPR Tetratricopepti 60.5 20 0.00043 18.6 3.8 26 80-105 4-29 (34)
378 KOG1464 COP9 signalosome, subu 59.8 1.3E+02 0.0029 27.0 17.5 201 212-413 21-252 (440)
379 PF11663 Toxin_YhaV: Toxin wit 59.4 15 0.00033 28.8 3.7 33 472-506 105-137 (140)
380 KOG0890 Protein kinase of the 59.0 4.1E+02 0.0088 32.3 25.8 152 82-241 1388-1542(2382)
381 PF14689 SPOB_a: Sensor_kinase 57.9 35 0.00076 22.7 4.9 25 115-139 26-50 (62)
382 cd00280 TRFH Telomeric Repeat 57.9 63 0.0014 27.1 7.1 67 408-477 85-158 (200)
383 PF09454 Vps23_core: Vps23 cor 57.4 35 0.00075 23.0 4.8 50 75-125 6-55 (65)
384 PF09670 Cas_Cas02710: CRISPR- 57.3 1.9E+02 0.0041 28.0 12.3 57 84-141 138-198 (379)
385 PF10579 Rapsyn_N: Rapsyn N-te 56.9 42 0.00092 23.6 5.1 45 89-133 18-64 (80)
386 PF13762 MNE1: Mitochondrial s 56.8 1E+02 0.0022 24.8 10.6 50 181-230 78-128 (145)
387 cd00280 TRFH Telomeric Repeat 56.5 1.2E+02 0.0026 25.5 10.4 22 189-210 118-139 (200)
388 PF12862 Apc5: Anaphase-promot 56.3 55 0.0012 23.9 6.3 53 88-140 9-69 (94)
389 cd08819 CARD_MDA5_2 Caspase ac 56.2 74 0.0016 22.9 6.8 12 197-208 51-62 (88)
390 PF15297 CKAP2_C: Cytoskeleton 56.1 1.3E+02 0.0029 28.2 9.7 67 444-512 120-190 (353)
391 PF08424 NRDE-2: NRDE-2, neces 56.0 1.8E+02 0.0039 27.3 17.3 98 109-208 16-128 (321)
392 COG0735 Fur Fe2+/Zn2+ uptake r 55.5 74 0.0016 25.7 7.4 45 186-230 24-68 (145)
393 KOG2908 26S proteasome regulat 55.2 1.5E+02 0.0033 27.7 9.7 51 405-455 88-143 (380)
394 PF11846 DUF3366: Domain of un 54.1 50 0.0011 28.2 6.6 32 459-490 141-172 (193)
395 KOG4507 Uncharacterized conser 53.6 1.2E+02 0.0025 30.7 9.3 131 95-228 591-721 (886)
396 PF14689 SPOB_a: Sensor_kinase 53.1 33 0.00071 22.8 4.2 23 432-454 28-50 (62)
397 PF11846 DUF3366: Domain of un 53.0 44 0.00094 28.6 6.1 31 109-139 141-171 (193)
398 KOG4507 Uncharacterized conser 51.7 77 0.0017 31.9 7.8 87 194-281 619-705 (886)
399 COG5108 RPO41 Mitochondrial DN 51.4 96 0.0021 31.8 8.5 74 397-473 33-114 (1117)
400 PF08311 Mad3_BUB1_I: Mad3/BUB 50.8 91 0.002 24.4 7.0 43 445-487 81-124 (126)
401 PF09868 DUF2095: Uncharacteri 50.5 71 0.0015 24.2 5.7 43 70-119 60-102 (128)
402 PRK10564 maltose regulon perip 50.3 36 0.00078 31.1 5.1 29 255-283 260-288 (303)
403 KOG4642 Chaperone-dependent E3 49.1 1.9E+02 0.0042 25.6 11.1 114 87-204 20-139 (284)
404 PF10475 DUF2450: Protein of u 48.9 1.4E+02 0.0029 27.7 9.0 52 258-315 104-155 (291)
405 PF09670 Cas_Cas02710: CRISPR- 48.3 2.6E+02 0.0057 27.0 11.1 53 193-246 142-198 (379)
406 TIGR02508 type_III_yscG type I 47.0 1.2E+02 0.0026 22.6 9.2 51 261-317 48-98 (115)
407 KOG2034 Vacuolar sorting prote 46.9 4E+02 0.0087 28.7 31.0 47 257-312 509-555 (911)
408 KOG0376 Serine-threonine phosp 45.9 53 0.0012 32.0 5.8 104 84-192 11-115 (476)
409 KOG3677 RNA polymerase I-assoc 45.3 1.8E+02 0.004 28.0 8.9 60 115-174 238-299 (525)
410 KOG1308 Hsp70-interacting prot 45.2 16 0.00034 33.8 2.1 92 124-218 126-218 (377)
411 cd08819 CARD_MDA5_2 Caspase ac 45.0 1.2E+02 0.0025 22.0 7.1 35 265-304 49-83 (88)
412 PRK11639 zinc uptake transcrip 44.7 1.8E+02 0.004 24.2 8.3 41 471-511 34-74 (169)
413 COG4003 Uncharacterized protei 44.1 1E+02 0.0022 21.7 5.3 38 70-114 30-67 (98)
414 PRK13342 recombination factor 43.0 3.3E+02 0.0072 26.7 19.9 46 291-336 231-279 (413)
415 KOG0376 Serine-threonine phosp 42.1 49 0.0011 32.3 5.0 106 403-514 15-122 (476)
416 PRK10941 hypothetical protein; 41.9 2.7E+02 0.0059 25.3 10.6 78 115-193 184-262 (269)
417 PF10366 Vps39_1: Vacuolar sor 41.8 67 0.0014 24.4 4.8 26 80-105 42-67 (108)
418 PF04190 DUF410: Protein of un 41.7 2.7E+02 0.0058 25.2 18.0 39 296-334 19-61 (260)
419 PF12862 Apc5: Anaphase-promot 41.4 1.4E+02 0.003 21.8 6.7 53 403-455 9-69 (94)
420 PRK13342 recombination factor 41.4 3.5E+02 0.0077 26.5 19.4 21 196-216 244-264 (413)
421 KOG1586 Protein required for f 41.0 2.6E+02 0.0056 24.8 19.9 22 263-284 165-186 (288)
422 PRK14700 recombination factor 40.9 3E+02 0.0064 25.5 9.9 36 301-336 140-175 (300)
423 PF12926 MOZART2: Mitotic-spin 40.3 1.4E+02 0.003 21.5 7.3 43 448-490 29-71 (88)
424 COG5108 RPO41 Mitochondrial DN 39.9 1.9E+02 0.0042 29.8 8.6 91 117-210 33-131 (1117)
425 PRK09462 fur ferric uptake reg 39.8 2E+02 0.0044 23.2 8.1 60 453-513 8-68 (148)
426 PRK10941 hypothetical protein; 39.7 3E+02 0.0064 25.1 10.6 78 430-508 184-262 (269)
427 PF07064 RIC1: RIC1; InterPro 39.3 2.9E+02 0.0064 25.0 14.8 27 80-106 85-111 (258)
428 KOG4567 GTPase-activating prot 38.9 2.2E+02 0.0047 26.3 8.0 71 132-207 263-343 (370)
429 cd07153 Fur_like Ferric uptake 38.9 1E+02 0.0022 23.5 5.7 43 470-512 8-50 (116)
430 TIGR01228 hutU urocanate hydra 38.8 2.7E+02 0.0059 27.6 9.2 68 90-170 207-279 (545)
431 PF02847 MA3: MA3 domain; Int 38.0 1.6E+02 0.0035 22.2 6.7 60 81-142 6-67 (113)
432 COG5187 RPN7 26S proteasome re 37.4 3.3E+02 0.0071 25.0 12.0 68 147-214 115-187 (412)
433 PF11817 Foie-gras_1: Foie gra 37.2 1.9E+02 0.0041 25.9 7.8 58 431-488 182-244 (247)
434 TIGR02270 conserved hypothetic 36.9 4.2E+02 0.009 26.0 26.7 237 81-348 42-278 (410)
435 PRK15180 Vi polysaccharide bio 36.3 4.4E+02 0.0096 26.1 29.1 127 83-213 295-422 (831)
436 KOG0128 RNA-binding protein SA 36.1 5.7E+02 0.012 27.4 32.0 96 77-175 113-218 (881)
437 PRK11639 zinc uptake transcrip 36.0 2E+02 0.0043 24.0 7.2 45 187-231 30-74 (169)
438 KOG1308 Hsp70-interacting prot 35.2 26 0.00056 32.5 1.9 49 370-419 127-175 (377)
439 KOG1166 Mitotic checkpoint ser 34.9 2.3E+02 0.0049 31.3 8.9 76 438-513 89-165 (974)
440 PF08424 NRDE-2: NRDE-2, neces 34.9 3.9E+02 0.0085 25.1 16.4 80 93-174 47-129 (321)
441 KOG2396 HAT (Half-A-TPR) repea 34.8 4.8E+02 0.01 26.1 36.4 81 95-177 89-170 (568)
442 KOG4814 Uncharacterized conser 34.7 4.4E+02 0.0094 27.3 10.0 95 78-175 356-456 (872)
443 smart00386 HAT HAT (Half-A-TPR 34.5 76 0.0017 16.8 3.9 27 92-119 2-28 (33)
444 PF01475 FUR: Ferric uptake re 34.4 1.2E+02 0.0025 23.4 5.3 46 467-512 12-57 (120)
445 PF10475 DUF2450: Protein of u 34.1 3.8E+02 0.0082 24.7 12.4 24 319-342 194-217 (291)
446 KOG1586 Protein required for f 34.1 3.4E+02 0.0073 24.1 22.2 23 297-319 164-186 (288)
447 KOG4521 Nuclear pore complex, 34.1 7.3E+02 0.016 28.0 12.6 121 149-275 985-1125(1480)
448 PF09454 Vps23_core: Vps23 cor 33.9 75 0.0016 21.4 3.5 49 110-159 6-54 (65)
449 KOG0687 26S proteasome regulat 33.8 4E+02 0.0087 24.9 13.0 150 352-505 65-224 (393)
450 PF13934 ELYS: Nuclear pore co 32.9 3.5E+02 0.0075 23.9 13.4 91 397-496 113-203 (226)
451 PF11817 Foie-gras_1: Foie gra 32.7 2.4E+02 0.0051 25.3 7.7 56 153-208 184-244 (247)
452 PRK08691 DNA polymerase III su 32.4 4.9E+02 0.011 27.6 10.5 82 375-459 182-277 (709)
453 PF09986 DUF2225: Uncharacteri 32.2 3.4E+02 0.0075 23.7 10.6 67 430-496 121-199 (214)
454 PF02607 B12-binding_2: B12 bi 32.2 1E+02 0.0022 21.5 4.3 35 89-123 13-47 (79)
455 PF02847 MA3: MA3 domain; Int 32.0 1.2E+02 0.0026 23.0 5.0 24 396-419 6-29 (113)
456 PRK09857 putative transposase; 31.9 4.1E+02 0.009 24.5 9.2 66 150-216 209-274 (292)
457 COG2178 Predicted RNA-binding 31.8 3.3E+02 0.0071 23.3 9.2 55 261-315 38-97 (204)
458 PRK14958 DNA polymerase III su 31.3 5.7E+02 0.012 26.0 11.0 76 383-461 191-279 (509)
459 PF10366 Vps39_1: Vacuolar sor 31.3 2.3E+02 0.0051 21.4 8.0 26 395-420 42-67 (108)
460 PF15469 Sec5: Exocyst complex 31.3 3.2E+02 0.0069 23.0 10.5 23 117-139 91-113 (182)
461 KOG3364 Membrane protein invol 30.9 2.8E+02 0.006 22.2 9.7 65 426-490 31-99 (149)
462 KOG2297 Predicted translation 30.8 4.4E+02 0.0095 24.4 20.3 20 323-342 322-341 (412)
463 cd07153 Fur_like Ferric uptake 30.7 1.3E+02 0.0028 22.9 5.0 36 406-441 14-49 (116)
464 smart00804 TAP_C C-terminal do 29.9 52 0.0011 22.0 2.2 23 90-112 38-61 (63)
465 PF12926 MOZART2: Mitotic-spin 29.6 2.2E+02 0.0047 20.6 7.7 43 98-140 29-71 (88)
466 KOG2034 Vacuolar sorting prote 29.5 7.6E+02 0.016 26.8 25.6 48 155-208 366-415 (911)
467 KOG2168 Cullins [Cell cycle co 29.4 7.5E+02 0.016 26.7 20.1 24 82-105 330-353 (835)
468 PF11838 ERAP1_C: ERAP1-like C 29.3 4.7E+02 0.01 24.3 22.2 81 233-316 146-230 (324)
469 KOG2422 Uncharacterized conser 29.1 6.4E+02 0.014 25.8 11.9 56 84-139 349-405 (665)
470 PF03745 DUF309: Domain of unk 29.0 1.8E+02 0.0039 19.4 5.6 47 88-134 10-61 (62)
471 PF09477 Type_III_YscG: Bacter 28.5 2.7E+02 0.0058 21.2 8.6 13 128-140 22-34 (116)
472 PF04762 IKI3: IKI3 family; I 28.4 8.6E+02 0.019 27.1 13.1 28 394-421 814-843 (928)
473 KOG0686 COP9 signalosome, subu 28.2 5.6E+02 0.012 24.9 14.9 30 406-435 318-352 (466)
474 PRK09462 fur ferric uptake reg 27.9 3.2E+02 0.007 22.0 7.4 45 187-231 21-66 (148)
475 PF04762 IKI3: IKI3 family; I 27.6 8.9E+02 0.019 27.0 17.2 28 74-102 692-719 (928)
476 PF04910 Tcf25: Transcriptiona 27.1 5.7E+02 0.012 24.5 20.7 117 88-209 21-166 (360)
477 PF09868 DUF2095: Uncharacteri 27.0 2.7E+02 0.0059 21.2 5.6 26 117-142 66-91 (128)
478 PRK07003 DNA polymerase III su 27.0 6.6E+02 0.014 27.1 10.3 92 409-503 181-286 (830)
479 PF01475 FUR: Ferric uptake re 26.9 1.3E+02 0.0027 23.2 4.4 47 432-478 12-58 (120)
480 KOG0292 Vesicle coat complex C 26.9 1.8E+02 0.004 31.0 6.4 96 404-499 1003-1121(1202)
481 PF08314 Sec39: Secretory path 26.8 6.8E+02 0.015 26.8 11.1 160 286-455 431-624 (715)
482 PRK14951 DNA polymerase III su 26.7 7.3E+02 0.016 26.0 10.7 81 376-459 188-282 (618)
483 PF14853 Fis1_TPR_C: Fis1 C-te 26.5 1.8E+02 0.0039 18.6 5.2 24 83-106 7-30 (53)
484 PF09477 Type_III_YscG: Bacter 26.4 2.9E+02 0.0063 21.0 8.7 81 90-177 19-99 (116)
485 smart00544 MA3 Domain in DAP-5 25.4 3E+02 0.0065 20.7 10.0 60 81-142 6-67 (113)
486 PRK09857 putative transposase; 25.1 5.5E+02 0.012 23.7 9.8 66 185-251 209-274 (292)
487 PF11768 DUF3312: Protein of u 24.3 7.7E+02 0.017 25.1 10.9 123 83-212 414-537 (545)
488 KOG1839 Uncharacterized protei 24.0 1.1E+03 0.024 26.9 11.9 24 181-204 972-995 (1236)
489 KOG3636 Uncharacterized conser 23.7 6.3E+02 0.014 24.7 8.7 89 139-228 175-271 (669)
490 PHA03100 ankyrin repeat protei 23.7 7.4E+02 0.016 24.7 11.0 151 83-251 38-203 (480)
491 KOG2422 Uncharacterized conser 23.2 8.2E+02 0.018 25.1 15.3 53 331-383 351-404 (665)
492 smart00777 Mad3_BUB1_I Mad3/BU 23.0 3.8E+02 0.0081 21.1 8.6 42 445-486 81-123 (125)
493 PF02184 HAT: HAT (Half-A-TPR) 22.9 1.6E+02 0.0034 16.6 3.4 22 93-116 3-24 (32)
494 PF04090 RNA_pol_I_TF: RNA pol 22.9 5E+02 0.011 22.4 7.9 35 393-428 42-76 (199)
495 KOG3636 Uncharacterized conser 22.8 7.3E+02 0.016 24.3 15.3 88 211-299 177-272 (669)
496 KOG0403 Neoplastic transformat 22.7 7.5E+02 0.016 24.4 22.5 59 431-492 513-573 (645)
497 KOG0687 26S proteasome regulat 22.7 6.5E+02 0.014 23.7 16.1 17 299-315 193-209 (393)
498 KOG2582 COP9 signalosome, subu 22.4 6.9E+02 0.015 23.9 13.5 220 79-317 104-346 (422)
499 TIGR02370 pyl_corrinoid methyl 22.4 2.2E+02 0.0048 24.4 5.4 39 438-476 6-44 (197)
500 cd02070 corrinoid_protein_B12- 21.7 1.9E+02 0.0041 24.9 4.9 38 439-476 6-43 (201)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.3e-67 Score=547.07 Aligned_cols=438 Identities=19% Similarity=0.290 Sum_probs=406.8
Q ss_pred CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCC--------------------------------CCHhHHHHHHHH
Q 009556 74 EFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFH--------------------------------PSSISYASLIEA 121 (532)
Q Consensus 74 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--------------------------------~~~~~~~~li~~ 121 (532)
.++...|..++..+++.|++++|+++|++|.+.|+. ||..+|+.++.+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a 446 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSV 446 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 345556666666666667777777777777666542 788999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHH
Q 009556 122 LASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDT 201 (532)
Q Consensus 122 ~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 201 (532)
|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 009556 202 WLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIRE--MGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQ 279 (532)
Q Consensus 202 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 279 (532)
.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+ .|+.||..+|+.+|.+|++.|++++|.++|+.|.
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999986 6789999999999999999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhH
Q 009556 280 QESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAI 359 (532)
Q Consensus 280 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 359 (532)
+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~t 686 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Q 009556 360 YAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGV 439 (532)
Q Consensus 360 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 439 (532)
|+.+|.+|++.|++++|.++|++|.+.++.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k 766 (1060)
T PLN03218 687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c-------------------CCcChHHHHHHHHHhCCCCCC
Q 009556 440 AGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIR----A-------------------KKFHKVPEIYKQMESSGCTPD 496 (532)
Q Consensus 440 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~a~~~~~~m~~~g~~p~ 496 (532)
.|++++|.++|++|.+.|+.||..+|++++..|.+ . +..++|..+|++|.+.|+.||
T Consensus 767 ~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd 846 (1060)
T PLN03218 767 KDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPT 846 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCC
Confidence 99999999999999999999999999999876542 1 223579999999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 009556 497 RKARQILQSALVVLE 511 (532)
Q Consensus 497 ~~t~~~l~~a~~~~~ 511 (532)
..||..++.++...+
T Consensus 847 ~~T~~~vL~cl~~~~ 861 (1060)
T PLN03218 847 MEVLSQVLGCLQLPH 861 (1060)
T ss_pred HHHHHHHHHHhcccc
Confidence 999999996654333
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8.9e-67 Score=540.88 Aligned_cols=436 Identities=18% Similarity=0.301 Sum_probs=421.9
Q ss_pred CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHH
Q 009556 74 EFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNIL 153 (532)
Q Consensus 74 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~l 153 (532)
.||..+||.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+
T Consensus 434 ~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaL 513 (1060)
T PLN03218 434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGAL 513 (1060)
T ss_pred CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHH--CCCCcCHHhHHHHHHHHHcCC
Q 009556 154 LRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRS--KGFQLNSFVYGKVIGLYRDNG 231 (532)
Q Consensus 154 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~~~~~ll~~~~~~~ 231 (532)
|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|
T Consensus 514 I~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G 593 (1060)
T PLN03218 514 IDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593 (1060)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999999999999999999986 679999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009556 232 MWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFT 311 (532)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 311 (532)
++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++++
T Consensus 594 ~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~ 673 (1060)
T PLN03218 594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCC
Q 009556 312 QMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPS 391 (532)
Q Consensus 312 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 391 (532)
+|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.+..|+..+|+.+|.+|++.|++++|.++|++|...|+.||
T Consensus 674 eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd 753 (1060)
T PLN03218 674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN 753 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh----c-------------------CCHHHHHH
Q 009556 392 GSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGV----A-------------------GKYKEALS 448 (532)
Q Consensus 392 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~-------------------g~~~~A~~ 448 (532)
..+|+.++.+|++.|++++|.+++.+|.+.|+.||..+|++++..|.+ + +..++|..
T Consensus 754 ~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~ 833 (1060)
T PLN03218 754 TITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALM 833 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHH
Confidence 999999999999999999999999999999999999999999976542 1 12467999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 009556 449 VYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSALVV 509 (532)
Q Consensus 449 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~a~~~ 509 (532)
+|++|.+.|+.||..||+.++.+++..+..+.+..+++.|...+..|+..+|+.|++++..
T Consensus 834 lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~ 894 (1060)
T PLN03218 834 VYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGE 894 (1060)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhcc
Confidence 9999999999999999999998888889999999999999999999999999999998843
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=9.3e-65 Score=535.98 Aligned_cols=428 Identities=21% Similarity=0.288 Sum_probs=413.4
Q ss_pred CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHH
Q 009556 73 EEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNI 152 (532)
Q Consensus 73 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ 152 (532)
..||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+|++
T Consensus 249 ~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~ 328 (857)
T PLN03077 249 PRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNS 328 (857)
T ss_pred CCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCC
Q 009556 153 LLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGM 232 (532)
Q Consensus 153 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 232 (532)
|+.+|++.|++++|.++|++|.. ||..+|+++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+
T Consensus 329 Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~ 404 (857)
T PLN03077 329 LIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGD 404 (857)
T ss_pred HHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccch
Confidence 99999999999999999999975 89999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009556 233 WKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQ 312 (532)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 312 (532)
++.|.++++.+.+.|+.++..+||.||++|+++|++++|.++|++|.+ +|..+|+.+|.+|++.|+.++|+++|++
T Consensus 405 ~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~ 480 (857)
T PLN03077 405 LDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQ 480 (857)
T ss_pred HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999975 5889999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCH
Q 009556 313 MQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSG 392 (532)
Q Consensus 313 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 392 (532)
|.. ++.||..||..++.+|++.|.++.+.+++..+.+.|..++..++++|+++|+++|++++|.++|+.+ .+|.
T Consensus 481 m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~ 554 (857)
T PLN03077 481 MLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDV 554 (857)
T ss_pred HHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCCh
Confidence 986 5999999999999999999999999999999999999999999999999999999999999999986 6899
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHH
Q 009556 393 SMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMK-DIGISPDLVTYSTLMKA 471 (532)
Q Consensus 393 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~p~~~~~~~l~~~ 471 (532)
.+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|++|. +.|+.|+..+|+.++.+
T Consensus 555 ~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~ 634 (857)
T PLN03077 555 VSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDL 634 (857)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998 78999999999999999
Q ss_pred HHhcCCcChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhhcc
Q 009556 472 FIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSALVVLEQRRCKQ 517 (532)
Q Consensus 472 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~a~~~~~~~~~~~ 517 (532)
|.+.|++++|.+++++|. ++||..+|..|+.+|...+..+.++
T Consensus 635 l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e 677 (857)
T PLN03077 635 LGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGE 677 (857)
T ss_pred HHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHH
Confidence 999999999999999994 8999999999999997766554443
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.3e-63 Score=515.20 Aligned_cols=431 Identities=20% Similarity=0.303 Sum_probs=413.5
Q ss_pred CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHH
Q 009556 73 EEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALG-FHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYN 151 (532)
Q Consensus 73 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~ 151 (532)
..++..+|+++|.+|.+.|++++|+++|+.|...+ +.||..+|+.++.+|++.++++.|.+++..|.+.|+.||..+|+
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 34566799999999999999999999999999865 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCC
Q 009556 152 ILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNG 231 (532)
Q Consensus 152 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 231 (532)
.++.+|++.|+++.|.++|++|.+ ||..+|++++.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC
Confidence 999999999999999999999975 8999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009556 232 MWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFT 311 (532)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 311 (532)
..+.+.+++..+.+.|+.+|..+||.||++|+++|++++|.++|++|.+ +|.++||.+|.+|++.|++++|+++|+
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~ 314 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYY 314 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999975 599999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCC
Q 009556 312 QMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPS 391 (532)
Q Consensus 312 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 391 (532)
+|.+.|+.||..||+.++.+|++.|++++|.+++..+.+.|.+++..++++|+++|++.|++++|.++|++|. .||
T Consensus 315 ~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d 390 (697)
T PLN03081 315 EMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKN 390 (697)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986 478
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHH
Q 009556 392 GSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKD-IGISPDLVTYSTLMK 470 (532)
Q Consensus 392 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~l~~ 470 (532)
..+||.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+ .|+.|+..+|+.++.
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999975 699999999999999
Q ss_pred HHHhcCCcChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhhccc
Q 009556 471 AFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSALVVLEQRRCKQR 518 (532)
Q Consensus 471 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~a~~~~~~~~~~~~ 518 (532)
+|.+.|++++|.+++++| ++.||..+|..|+.+|...++-+.+..
T Consensus 471 ~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~ 515 (697)
T PLN03081 471 LLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRL 515 (697)
T ss_pred HHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHH
Confidence 999999999999998876 689999999999999998877655443
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8.9e-64 Score=528.54 Aligned_cols=432 Identities=20% Similarity=0.266 Sum_probs=398.5
Q ss_pred CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHH
Q 009556 73 EEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNI 152 (532)
Q Consensus 73 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ 152 (532)
.+||.++||++|.+|++.|++++|+++|++|...|+.||..||+.++++|+..+++..+.+++..+.+.|+.||..++++
T Consensus 148 ~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ 227 (857)
T PLN03077 148 PERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNA 227 (857)
T ss_pred CCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCC
Q 009556 153 LLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGM 232 (532)
Q Consensus 153 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 232 (532)
|+.+|++.|+++.|.++|++|.+ ||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+
T Consensus 228 Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~ 303 (857)
T PLN03077 228 LITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGD 303 (857)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Confidence 99999999999999999999975 89999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009556 233 WKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQ 312 (532)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 312 (532)
.+.|.+++..+.+.|+.||..+||.||.+|++.|++++|.++|++|.. ||..+|+.+|.+|++.|++++|+++|++
T Consensus 304 ~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~ 379 (857)
T PLN03077 304 ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYAL 379 (857)
T ss_pred hHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999974 6999999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCH
Q 009556 313 MQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSG 392 (532)
Q Consensus 313 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 392 (532)
|.+.|+.||..||+.++.+|++.|+++.+.++++.+.+.|..++..+|+.|+++|++.|++++|.++|++|.+ +|.
T Consensus 380 M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~ 455 (857)
T PLN03077 380 MEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDV 455 (857)
T ss_pred HHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999888753 345
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhccCCC-------------------------------------------------
Q 009556 393 SMFCILANAYAQQGLCEQTVKVLQLMEPEGI------------------------------------------------- 423 (532)
Q Consensus 393 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~------------------------------------------------- 423 (532)
.+|+.++.+|++.|+.++|.++|++|.. ++
T Consensus 456 vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y 534 (857)
T PLN03077 456 ISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLY 534 (857)
T ss_pred eeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHH
Confidence 5666666666666666666666666543 22
Q ss_pred ----------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHH
Q 009556 424 ----------------EPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQ 487 (532)
Q Consensus 424 ----------------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 487 (532)
.||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|++
T Consensus 535 ~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~ 614 (857)
T PLN03077 535 VRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHS 614 (857)
T ss_pred HHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHH
Confidence 4566678888889999999999999999999999999999999999999999999999999999
Q ss_pred HH-hCCCCCCHHHHHHHHHHHHHHhhhhhcc
Q 009556 488 ME-SSGCTPDRKARQILQSALVVLEQRRCKQ 517 (532)
Q Consensus 488 m~-~~g~~p~~~t~~~l~~a~~~~~~~~~~~ 517 (532)
|. +.|+.|+..+|..+++++.+.++-+.+.
T Consensus 615 M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~ 645 (857)
T PLN03077 615 MEEKYSITPNLKHYACVVDLLGRAGKLTEAY 645 (857)
T ss_pred HHHHhCCCCchHHHHHHHHHHHhCCCHHHHH
Confidence 99 7899999999999999999988765554
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.9e-60 Score=488.54 Aligned_cols=431 Identities=18% Similarity=0.266 Sum_probs=411.4
Q ss_pred CCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHH
Q 009556 72 GEEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYN 151 (532)
Q Consensus 72 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~ 151 (532)
+..||..+|+.++.+|++.++++.|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|+
T Consensus 118 ~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n 193 (697)
T PLN03081 118 PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWG 193 (697)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999997 48999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCC
Q 009556 152 ILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNG 231 (532)
Q Consensus 152 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 231 (532)
+++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.++++.|..+.+.+++..+.+.|+.||..+|+.++.+|++.|
T Consensus 194 ~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g 273 (697)
T PLN03081 194 TIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG 273 (697)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009556 232 MWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFT 311 (532)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 311 (532)
++++|.++|++|.+ +|..+||.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++.
T Consensus 274 ~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~ 349 (697)
T PLN03081 274 DIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHA 349 (697)
T ss_pred CHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHH
Confidence 99999999999964 58999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCC
Q 009556 312 QMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPS 391 (532)
Q Consensus 312 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 391 (532)
.|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+ +|..+|+++|.+|++.|+.++|.++|++|.+.|+.||
T Consensus 350 ~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd 425 (697)
T PLN03081 350 GLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN 425 (697)
T ss_pred HHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC
Confidence 999999999999999999999999999999999999864 6789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhcc-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009556 392 GSMFCILANAYAQQGLCEQTVKVLQLMEP-EGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMK 470 (532)
Q Consensus 392 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 470 (532)
..||+.++.+|++.|++++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++| ++.|+..+|++|+.
T Consensus 426 ~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~ 502 (697)
T PLN03081 426 HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLT 502 (697)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHH
Confidence 99999999999999999999999999976 599999999999999999999999999998876 57899999999999
Q ss_pred HHHhcCCcChHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHHhhhhhcccc
Q 009556 471 AFIRAKKFHKVPEIYKQMESSGCTPD-RKARQILQSALVVLEQRRCKQRL 519 (532)
Q Consensus 471 ~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~l~~a~~~~~~~~~~~~~ 519 (532)
+|...|+++.|.++++++.+ +.|+ ..+|..|++.+...++-+.+.++
T Consensus 503 a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v 550 (697)
T PLN03081 503 ACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKV 550 (697)
T ss_pred HHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999974 6675 56999999999988876655443
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=1.4e-26 Score=250.65 Aligned_cols=428 Identities=13% Similarity=0.060 Sum_probs=336.0
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHH
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (532)
+...|+.+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++.+.+.+ +.+..++..+..
T Consensus 464 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 541 (899)
T TIGR02917 464 NASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAG 541 (899)
T ss_pred CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 45567777777777788888888887777654 4455667777777777888888888888777654 456677777788
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHH
Q 009556 156 GFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKK 235 (532)
Q Consensus 156 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 235 (532)
.+.+.|+.++|...++++.+.+. .+...+..++..+.+.|++++|.++++.+.+.. +.+..+|..+...+...|++++
T Consensus 542 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 619 (899)
T TIGR02917 542 LYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNK 619 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 88888888888888888776543 456677778888888888888888888887653 3466778888888888888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009556 236 AVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQE 315 (532)
Q Consensus 236 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 315 (532)
|...++.+.+.. +.+...+..+...+.+.|++++|...|+++.+.. +.+..++..++..+...|++++|.++++.+.+
T Consensus 620 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 697 (899)
T TIGR02917 620 AVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQK 697 (899)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 888888887764 3466677888888888888888888888887653 23577788888888888888888888888887
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHH
Q 009556 316 QGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMF 395 (532)
Q Consensus 316 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 395 (532)
.. +.+...+..+...+...|++++|...+..+.... |+..++..+..++.+.|+.++|.+.++.+.+.. +.+...+
T Consensus 698 ~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~ 773 (899)
T TIGR02917 698 QH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLR 773 (899)
T ss_pred hC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 64 4466777778888888899999999998888765 333667778888889999999999998888764 4567788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009556 396 CILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRA 475 (532)
Q Consensus 396 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 475 (532)
..+...|...|+.++|.+.|+++.+.. +++...++.+...+...|+ .+|..+++++.+.. +-+..++..+...+...
T Consensus 774 ~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 850 (899)
T TIGR02917 774 TALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEK 850 (899)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence 888889999999999999999988765 5678888899999999999 88999999888753 33566778888899999
Q ss_pred CCcChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhhcc
Q 009556 476 KKFHKVPEIYKQMESSGCTPDRKARQILQSALVVLEQRRCKQ 517 (532)
Q Consensus 476 g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~a~~~~~~~~~~~ 517 (532)
|++++|.+.++++.+.+.. +..++..+..++...|+...+.
T Consensus 851 g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 891 (899)
T TIGR02917 851 GEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEAR 891 (899)
T ss_pred CCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999986643 7888888999988887765543
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=2.9e-26 Score=248.20 Aligned_cols=402 Identities=12% Similarity=0.071 Sum_probs=356.9
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHH
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (532)
+...+..+...+...|++++|.+.|+++.+.+ +.+..++..+...+.+.|+.++|..+++++.+.+ +.+...+..++.
T Consensus 498 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 575 (899)
T TIGR02917 498 FFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQ 575 (899)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHH
Confidence 45567788899999999999999999998875 5678899999999999999999999999998765 567788889999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHH
Q 009556 156 GFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKK 235 (532)
Q Consensus 156 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 235 (532)
.+.+.|++++|..+++.+.+.. +.+...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++
T Consensus 576 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 653 (899)
T TIGR02917 576 YYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAK 653 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999998754 3677899999999999999999999999998764 2367788899999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009556 236 AVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQE 315 (532)
Q Consensus 236 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 315 (532)
|...++++.+.. +.+...+..++..+...|++++|.++++.+.+... .+...+..+...+...|++++|.+.++++..
T Consensus 654 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 731 (899)
T TIGR02917 654 AITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALK 731 (899)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999999998874 44688999999999999999999999999988753 4677888899999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHH
Q 009556 316 QGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMF 395 (532)
Q Consensus 316 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 395 (532)
.+ |+..++..+..++.+.|++++|.+.+..+.+.. +.+...+..+...|...|+.++|...|+++.+.. +.+...+
T Consensus 732 ~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~ 807 (899)
T TIGR02917 732 RA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVL 807 (899)
T ss_pred hC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 64 555777889999999999999999999998875 5678899999999999999999999999999875 4678889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009556 396 CILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRA 475 (532)
Q Consensus 396 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 475 (532)
+.+...+...|+ .+|...++++.+.. +-+..++..+...+...|++++|.++|+++.+.+.. +..++..+..++.+.
T Consensus 808 ~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~ 884 (899)
T TIGR02917 808 NNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLAT 884 (899)
T ss_pred HHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHc
Confidence 999999999999 88999999988763 446677888999999999999999999999987654 888999999999999
Q ss_pred CCcChHHHHHHHHHh
Q 009556 476 KKFHKVPEIYKQMES 490 (532)
Q Consensus 476 g~~~~a~~~~~~m~~ 490 (532)
|++++|.+++++|++
T Consensus 885 g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 885 GRKAEARKELDKLLN 899 (899)
T ss_pred CCHHHHHHHHHHHhC
Confidence 999999999999863
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=2.4e-21 Score=188.31 Aligned_cols=299 Identities=13% Similarity=0.085 Sum_probs=182.7
Q ss_pred HhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhccCCHH
Q 009556 193 VNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLD---RQIYNSIIDTFGKYGELV 269 (532)
Q Consensus 193 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~ 269 (532)
...|++++|...|.++.+.+. .+..++..+...+...|++++|..+++.+.+.+..++ ...+..+...|.+.|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 334444444444444444321 1233444444444455555555555554444321111 134455556666666666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHH
Q 009556 270 EALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDP----KIFITIISCLGELGKWDVIKKNF 345 (532)
Q Consensus 270 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~ 345 (532)
+|..+|+++.+.. +++..+++.++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++|...+
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 6666666665431 224555666666666666666666666666554322211 12334555566667777777777
Q ss_pred HHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCC
Q 009556 346 ENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEP 425 (532)
Q Consensus 346 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 425 (532)
+++.+.. +.+...+..+...|.+.|++++|.++++++.+.+......+++.++.+|...|++++|.+.++++.+. .|
T Consensus 204 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p 280 (389)
T PRK11788 204 KKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YP 280 (389)
T ss_pred HHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 7766543 33455666677777777777777777777766543222455677778888888888888888887765 45
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCcChHHHHHHHHHhCCCCCCHH
Q 009556 426 NLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIR---AKKFHKVPEIYKQMESSGCTPDRK 498 (532)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~ 498 (532)
+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..++++|.+.++.|+..
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 6666677788888888888888888887764 5777777777776664 457778888888888777777664
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.91 E-value=4.1e-19 Score=193.39 Aligned_cols=400 Identities=14% Similarity=0.083 Sum_probs=268.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChHhH------------
Q 009556 84 IQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNP-KLRFY------------ 150 (532)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~-~~~~~------------ 150 (532)
...+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|+..|++..+..... ....+
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 445678899999999999988874 4578889999999999999999999999988754211 11112
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHH---
Q 009556 151 NILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLY--- 227 (532)
Q Consensus 151 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~--- 227 (532)
......+.+.|++++|...|+++.+... .+...+..+...+...|++++|.+.|++..+.... +...+..+...+
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~ 432 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQ 432 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence 1224567789999999999999988643 45667888899999999999999999998876322 344444444333
Q ss_pred ---------------------------------------HcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 009556 228 ---------------------------------------RDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGEL 268 (532)
Q Consensus 228 ---------------------------------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 268 (532)
...|++++|.+.+++..+... .+...+..+...|.+.|++
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCH
Confidence 334555555555555544431 1334444455555555555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHHHccCCHH
Q 009556 269 VEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPK---------IFITIISCLGELGKWD 339 (532)
Q Consensus 269 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~---------~~~~ll~~~~~~~~~~ 339 (532)
++|...++++.+... .+...+..+...+...++.++|+..++.+......++.. .+......+...|+.+
T Consensus 512 ~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 512 SQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 555555555444221 122222233333444555555555554433211111110 1122344556667777
Q ss_pred HHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 009556 340 VIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLME 419 (532)
Q Consensus 340 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 419 (532)
+|..+++. .+.+...+..+...+.+.|++++|++.|+.+.+.. +.+...+..++..|...|++++|.+.++...
T Consensus 591 eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 591 EAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 77766651 34556677788899999999999999999998864 3467788889999999999999999999887
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--C---CHHHHHHHHHHHHhcCCcChHHHHHHHHHh-CCC
Q 009556 420 PEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGIS--P---DLVTYSTLMKAFIRAKKFHKVPEIYKQMES-SGC 493 (532)
Q Consensus 420 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~g~ 493 (532)
+.. +.+...+..+..++...|++++|.++++++...... | +...+..+...+...|++++|.+.|++... .|+
T Consensus 665 ~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~ 743 (1157)
T PRK11447 665 ATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGI 743 (1157)
T ss_pred ccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Confidence 652 335566777888889999999999999998764321 2 224566677888899999999999998863 345
Q ss_pred CC
Q 009556 494 TP 495 (532)
Q Consensus 494 ~p 495 (532)
.|
T Consensus 744 ~~ 745 (1157)
T PRK11447 744 TP 745 (1157)
T ss_pred CC
Confidence 43
No 11
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=1.6e-20 Score=182.56 Aligned_cols=302 Identities=16% Similarity=0.122 Sum_probs=218.3
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hHhHHHHHHHHHhcC
Q 009556 85 QYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPK---LRFYNILLRGFLKKG 161 (532)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g 161 (532)
..+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+.+.+..++ ...+..+...|.+.|
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 34567799999999999999874 45667888888999999999999999998887532221 246778888888999
Q ss_pred ChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCH----HhHHHHHHHHHcCCChHHHH
Q 009556 162 LLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNS----FVYGKVIGLYRDNGMWKKAV 237 (532)
Q Consensus 162 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~ 237 (532)
+++.|..+|+++.+... .+..++..++..+.+.|++++|.+.++.+.+.+..++. ..+..+...+.+.|++++|.
T Consensus 122 ~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 122 LLDRAEELFLQLVDEGD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 99999999998887532 56678888888899999999999999888876543322 23445666677788888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 009556 238 GIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQG 317 (532)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 317 (532)
+.++++.+.. +.+...+..+...+.+.|++++|.+.|+++.+.+......+++.++.+|...|++++|.+.++++.+.
T Consensus 201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 278 (389)
T PRK11788 201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE- 278 (389)
T ss_pred HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 8888877654 23455667777778888888888888888776532222345677777777888888888888777764
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHh---cCCcccHHHHHHHHHHcCCCCCHH
Q 009556 318 FYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQ---YGRFRDPEECIAALKLEGLQPSGS 393 (532)
Q Consensus 318 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~ 393 (532)
.|+...+..+...+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.+++..+++++.+.++.|++.
T Consensus 279 -~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 -YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred -CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 345555566777777777777777777777665 3556666666666553 446777777777777665555444
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=2e-18 Score=176.65 Aligned_cols=403 Identities=11% Similarity=0.045 Sum_probs=296.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHh
Q 009556 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLK 159 (532)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 159 (532)
+......+.+.|++++|+..|++.... .|+...|..+..++.+.|++++|++.++..++.. +.+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 456677889999999999999998876 6788899999999999999999999999999875 4567789999999999
Q ss_pred cCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHH-------------HHH------------C--C
Q 009556 160 KGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINE-------------MRS------------K--G 212 (532)
Q Consensus 160 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~-------------m~~------------~--~ 212 (532)
.|++++|+.-|......+...+.. ...++.-+........+...++. ... . .
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 999999998887665442211211 11111111110000111111100 000 0 0
Q ss_pred CCcC-HHhHHHHHHH---HHcCCChHHHHHHHHHHHHcC-C-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC
Q 009556 213 FQLN-SFVYGKVIGL---YRDNGMWKKAVGIVEEIREMG-L-SLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPD 286 (532)
Q Consensus 213 ~~~~-~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 286 (532)
..+. ...+..+... ....+++++|.+.|+...+.+ . +.....++.+...+...|++++|+..|++..+... .+
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~ 364 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-RV 364 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-Cc
Confidence 0000 0001111111 123468999999999998764 2 23456788888899999999999999999987532 24
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHH
Q 009556 287 IVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDI 366 (532)
Q Consensus 287 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 366 (532)
...|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...|++..+.. +.+...+..+..+
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~ 442 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVT 442 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHH
Confidence 6678888999999999999999999998763 3457888889999999999999999999999876 4567778889999
Q ss_pred HHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCC-----CH-HHHHHHHHHHHhc
Q 009556 367 YGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEP-----NL-VMLNVLINAFGVA 440 (532)
Q Consensus 367 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-----~~-~~~~~li~~~~~~ 440 (532)
+.+.|++++|+..|++..+.. +.+...++.+...+...|++++|.+.|++........ +. ..++..+..+...
T Consensus 443 ~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~ 521 (615)
T TIGR00990 443 QYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWK 521 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHh
Confidence 999999999999999988753 3457788999999999999999999999987653111 11 1122223334457
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhC
Q 009556 441 GKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESS 491 (532)
Q Consensus 441 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 491 (532)
|++++|.+++++..+.. +.+...+..+...+.+.|++++|.+.|++..+.
T Consensus 522 ~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 522 QDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred hhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999999988754 234557889999999999999999999999864
No 13
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.89 E-value=8.6e-18 Score=183.16 Aligned_cols=403 Identities=13% Similarity=0.026 Sum_probs=264.1
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCC------------------C--------------CCHhHH--------
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGF------------------H--------------PSSISY-------- 115 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~------------------~--------------~~~~~~-------- 115 (532)
+...+..+...+.+.|++++|++.++++..... . |+....
T Consensus 180 ~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~ 259 (1157)
T PRK11447 180 NTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLA 259 (1157)
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHH
Confidence 345677888888899999999999998754320 0 000000
Q ss_pred -------------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCc-C
Q 009556 116 -------------ASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICR-N 181 (532)
Q Consensus 116 -------------~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~ 181 (532)
......+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|...|++..+..... +
T Consensus 260 ~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~ 338 (1157)
T PRK11447 260 EQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSN 338 (1157)
T ss_pred HHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccc
Confidence 011344567789999999999988765 4577888899999999999999999999988754322 1
Q ss_pred HHHHH------------HHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCC
Q 009556 182 QETYE------------ILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLS 249 (532)
Q Consensus 182 ~~~~~------------~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 249 (532)
...|. .....+.+.|++++|...|++..+... .+...+..+...+...|++++|++.|+++.+...
T Consensus 339 ~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p- 416 (1157)
T PRK11447 339 RDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP- 416 (1157)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-
Confidence 11221 224466788999999999999988743 2566777888899999999999999999887642
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 009556 250 LDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIR--------PDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPD 321 (532)
Q Consensus 250 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 321 (532)
.+...+..+...|. .++.++|..+++.+...... -....+..+...+...|++++|++.+++..+.. +-+
T Consensus 417 ~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~ 494 (1157)
T PRK11447 417 GNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGS 494 (1157)
T ss_pred CCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC
Confidence 23444544444442 23445555444433211000 001122233344445555555555555555432 113
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHH----------------------------------------
Q 009556 322 PKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYA---------------------------------------- 361 (532)
Q Consensus 322 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---------------------------------------- 361 (532)
...+..+...+.+.|++++|...++++.+.. +.+...+.
T Consensus 495 ~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~ 573 (1157)
T PRK11447 495 VWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQS 573 (1157)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhh
Confidence 3344445555555555555555555554432 11222222
Q ss_pred ----HHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHH
Q 009556 362 ----ILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAF 437 (532)
Q Consensus 362 ----~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 437 (532)
.+...+...|+.++|..+++. .+.+...+..+...+.+.|++++|++.+++..+.. +.+...+..++..+
T Consensus 574 ~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~ 647 (1157)
T PRK11447 574 DQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVD 647 (1157)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 234445556666666666551 23455667778889999999999999999998764 45678889999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhC
Q 009556 438 GVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESS 491 (532)
Q Consensus 438 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 491 (532)
...|++++|.+.++...+.. +.+...+..+..++...|++++|.++++++...
T Consensus 648 ~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 648 IAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 99999999999999887642 234556777888899999999999999999864
No 14
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.89 E-value=2.7e-18 Score=178.87 Aligned_cols=419 Identities=10% Similarity=0.025 Sum_probs=319.1
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHH
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (532)
++....-.+......|+.++|++++.+..... +.+...+..+..++...|++++|.+++++..+.. +.+...+..+..
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 33344566777888999999999999998632 5566679999999999999999999999998764 456777888999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHH
Q 009556 156 GFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKK 235 (532)
Q Consensus 156 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 235 (532)
.+...|++++|...+++..+... .+.. +..+..++...|+.++|+..++++.+.... +...+..+..++...+..++
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHH
Confidence 99999999999999999988643 4555 888999999999999999999999987433 55666677888888999999
Q ss_pred HHHHHHHHHHcCCCCCH------HHHHHHHHHHh-----ccCCH---HHHHHHHHHHHhC-CCCCCHH-HHH----HHHH
Q 009556 236 AVGIVEEIREMGLSLDR------QIYNSIIDTFG-----KYGEL---VEALEVFEKMQQE-SIRPDIV-TWN----SLIR 295 (532)
Q Consensus 236 a~~~~~~~~~~~~~~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-~~~p~~~-~~~----~li~ 295 (532)
|++.++.... .|+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+. ..+.
T Consensus 169 Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~ 245 (765)
T PRK10049 169 ALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG 245 (765)
T ss_pred HHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH
Confidence 9998886654 2221 12222233222 22234 7788888888854 2223221 111 1134
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC---CHhHHHHHHHHHHhcC
Q 009556 296 WHCKAGDVAKALELFTQMQEQGFY-PDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGK---IGAIYAILVDIYGQYG 371 (532)
Q Consensus 296 ~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g 371 (532)
.+...|++++|+..|+++.+.+.. |+. ....+...+...|++++|...++.+.+..... .......+..++...|
T Consensus 246 ~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g 324 (765)
T PRK10049 246 ALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE 324 (765)
T ss_pred HHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc
Confidence 456779999999999999987532 332 22335778999999999999999987654221 1345666777889999
Q ss_pred CcccHHHHHHHHHHcCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHH
Q 009556 372 RFRDPEECIAALKLEGL-----------QPS---GSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAF 437 (532)
Q Consensus 372 ~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 437 (532)
++++|..+++.+..... .|+ ...+..+...+...|+.++|++.++++.... +.+...+..+...+
T Consensus 325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~ 403 (765)
T PRK10049 325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVL 403 (765)
T ss_pred cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 99999999999987532 123 2345667788899999999999999998764 55678889999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 009556 438 GVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSAL 507 (532)
Q Consensus 438 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~a~ 507 (532)
...|++++|++.+++..+.. +.+...+..+...+...|++++|.++++++++ ..|+......+-+.+
T Consensus 404 ~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 404 QARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGVQRLARAR 470 (765)
T ss_pred HhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 99999999999999998853 23456777788889999999999999999998 678887777666655
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=3.3e-18 Score=174.42 Aligned_cols=364 Identities=10% Similarity=-0.003 Sum_probs=285.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhc
Q 009556 81 NKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKK 160 (532)
Q Consensus 81 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 160 (532)
..++..+.+.|++++|+.+++...... +.+...+..++.++...|++++|.+.++++.+.. +.+...+..+...+.+.
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 456778889999999999999988874 4456667777788888999999999999999875 55678889999999999
Q ss_pred CChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHH
Q 009556 161 GLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIV 240 (532)
Q Consensus 161 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 240 (532)
|++++|...+++...... .+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|...+
T Consensus 124 g~~~~Ai~~l~~Al~l~P-~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 124 KQYATVADLAEQAWLAFS-GNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred CCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHH
Confidence 999999999999988633 45778889999999999999999999988776433 23333333 3478899999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHC
Q 009556 241 EEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAK----ALELFTQMQEQ 316 (532)
Q Consensus 241 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~ 316 (532)
+.+.+....++...+..+...+.+.|++++|...+++..+... .+...+..+...+...|++++ |...+++..+.
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 9988775444555556667888999999999999999987643 367788889999999999986 89999999875
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCH-HHH
Q 009556 317 GFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSG-SMF 395 (532)
Q Consensus 317 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~ 395 (532)
. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..+|.+.|++++|...++.+...+ |+. ..+
T Consensus 280 ~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~ 355 (656)
T PRK15174 280 N-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWN 355 (656)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHH
Confidence 3 3366788889999999999999999999999875 4567778889999999999999999999998764 333 334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHH
Q 009556 396 CILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVML----NVLINAFGVAGKYKEALSVYHLMK 454 (532)
Q Consensus 396 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~----~~li~~~~~~g~~~~A~~~~~~m~ 454 (532)
..+..++...|+.++|.+.|++..+....--...| ..+-.++...+..++....+.++.
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~~~~~~~~~~~W~~~~~ 418 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALDGQISAVNLPPERLDWAWEVA 418 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHHHhcCCccchhhHHHHHh
Confidence 44567889999999999999998765211111222 333344444455544434455543
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=5.7e-18 Score=172.67 Aligned_cols=392 Identities=9% Similarity=-0.037 Sum_probs=299.0
Q ss_pred HHcCChHHHHHHHHHHHHcC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhH
Q 009556 88 CKLGDIDEAMALLAQMQALG--FHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGL 165 (532)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 165 (532)
.+..+++.-.-.|....+.- -..+..-...++..+.+.|++++|..+++...... +.+...+..++.+....|++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHH
Confidence 35566666655565544321 01233345567788889999999999999998765 4455666777788888999999
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHH
Q 009556 166 GSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIRE 245 (532)
Q Consensus 166 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 245 (532)
|...|+++....+ .+...+..+...+.+.|++++|.+.+++..... +.+...+..+...+...|++++|...++.+..
T Consensus 95 A~~~l~~~l~~~P-~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 95 VLQVVNKLLAVNV-CQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 9999999998654 456788889999999999999999999998863 22567888899999999999999999998877
Q ss_pred cCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 009556 246 MGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIF 325 (532)
Q Consensus 246 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 325 (532)
.... +...+..+ ..+...|++++|...++.+.+....++...+..+...+...|++++|+..+++..+.. +.+...+
T Consensus 173 ~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~ 249 (656)
T PRK15174 173 EVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALR 249 (656)
T ss_pred hCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 6433 33344333 3478899999999999998876443445555666788899999999999999999764 3457778
Q ss_pred HHHHHHHHccCCHHH----HHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 009556 326 ITIISCLGELGKWDV----IKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANA 401 (532)
Q Consensus 326 ~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 401 (532)
..+...+...|++++ |...++.+.+.. +.+...+..+...+.+.|++++|...+++..... +.+...+..+...
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~ 327 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 888899999999986 899999998875 5578899999999999999999999999998865 3356677888999
Q ss_pred HHhcCCHHHHHHHHHHhccCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcC
Q 009556 402 YAQQGLCEQTVKVLQLMEPEGIEPNL-VMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLV----TYSTLMKAFIRAK 476 (532)
Q Consensus 402 ~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~g 476 (532)
+...|++++|.+.++.+... .|+. ..+..+..++...|++++|...|++..+....--.. ....+-.++...+
T Consensus 328 l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~~~~ 405 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALDGQISAVN 405 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHHHhcC
Confidence 99999999999999999875 4444 334445778999999999999999987653221122 2233334444455
Q ss_pred CcChHHHHHHHHH
Q 009556 477 KFHKVPEIYKQME 489 (532)
Q Consensus 477 ~~~~a~~~~~~m~ 489 (532)
..++......++.
T Consensus 406 ~~~~~~~W~~~~~ 418 (656)
T PRK15174 406 LPPERLDWAWEVA 418 (656)
T ss_pred CccchhhHHHHHh
Confidence 5554444555554
No 17
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.88 E-value=3.2e-19 Score=165.83 Aligned_cols=381 Identities=15% Similarity=0.146 Sum_probs=266.4
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhH-HHHHH
Q 009556 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFY-NILLR 155 (532)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~-~~li~ 155 (532)
..+|..+.+.+-..|++++|+.+++.+.+.. +.....|..+..++...|+.+.|.+.|.+.++.+ |+.... +.+..
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgn 192 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhH
Confidence 3567777788888888888888888887763 3356678888888888888888888888777653 554433 33444
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcC-HHhHHHHHHHHHcCCChH
Q 009556 156 GFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLN-SFVYGKVIGLYRDNGMWK 234 (532)
Q Consensus 156 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~ 234 (532)
..-..|++++|...|.+..+... -=...|+.|...+-..|+...|++-|++.... .|+ ...|-.|...|...+.++
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcch
Confidence 45557888888887777766422 22456777888888888888888888877765 333 456777777888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009556 235 KAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQ 314 (532)
Q Consensus 235 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 314 (532)
+|...|.+..... +.....+..+...|...|++|-|+..+++..+.... -...|+.|..++-..|++.+|.+.+.+..
T Consensus 270 ~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 270 RAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred HHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 8888877776553 234556666777777888888888888887765322 34567888888888888888888888777
Q ss_pred HCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCC-HH
Q 009556 315 EQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPS-GS 393 (532)
Q Consensus 315 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~ 393 (532)
... .-.....+.+...+...|.+++|..+|....+.. +.-....+.|...|-+.|++++|...+++..+. .|+ ..
T Consensus 348 ~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAd 423 (966)
T KOG4626|consen 348 RLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFAD 423 (966)
T ss_pred HhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHH
Confidence 642 2234566777778888888888888887777653 233556777777888888888888888877754 343 44
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHH
Q 009556 394 MFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLV-TYSTLMKAF 472 (532)
Q Consensus 394 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~ 472 (532)
.|+.+...|-..|+.+.|.+.+.+.+..+ +.-....+.|...|-..|++.+|++-+++..+ ++||.. .|..++.++
T Consensus 424 a~~NmGnt~ke~g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 424 ALSNMGNTYKEMGDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCL 500 (966)
T ss_pred HHHhcchHHHHhhhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHH
Confidence 67777777888888888888887777643 22345667777888888888888888887776 345532 444444444
No 18
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.88 E-value=3.5e-19 Score=165.63 Aligned_cols=372 Identities=15% Similarity=0.161 Sum_probs=311.5
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHH-HHH
Q 009556 110 PSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETY-EIL 188 (532)
Q Consensus 110 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-~~l 188 (532)
.-..+|..+...+-..|++++|+.+|+.+.+.. +..+..|..+..++...|+.+.|.+.|.+..+. .|+.... +.+
T Consensus 114 q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~l 190 (966)
T KOG4626|consen 114 QGAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDL 190 (966)
T ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcch
Confidence 345678889999999999999999999999875 456789999999999999999999999988874 3555543 344
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 009556 189 LDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGEL 268 (532)
Q Consensus 189 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 268 (532)
...+...|++++|...|.+..+... -=...|+.|...+-..|+.-.|++.|++.++.+. --...|-.|...|...+.+
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP-~f~dAYiNLGnV~ke~~~~ 268 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDP-NFLDAYINLGNVYKEARIF 268 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCC-cchHHHhhHHHHHHHHhcc
Confidence 4455668999999999988877522 1356788888899999999999999999998642 2356788899999999999
Q ss_pred HHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHH
Q 009556 269 VEALEVFEKMQQESIRP-DIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPD-PKIFITIISCLGELGKWDVIKKNFE 346 (532)
Q Consensus 269 ~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~ 346 (532)
+.|...+.+.... .| ..+.+..+...|...|+.+.|++.+++..+. .|+ +..|+.+..++-..|++.+|.+.+.
T Consensus 269 d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYn 344 (966)
T KOG4626|consen 269 DRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYN 344 (966)
T ss_pred hHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHH
Confidence 9999999887764 33 4566777888899999999999999999875 444 5789999999999999999999999
Q ss_pred HHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCC
Q 009556 347 NMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPN 426 (532)
Q Consensus 347 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 426 (532)
...... +......+.|...|...|.+++|..+|....+-.. --...++.|...|-++|++++|...+++..+- .|+
T Consensus 345 kaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p-~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~ 420 (966)
T KOG4626|consen 345 KALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFP-EFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPT 420 (966)
T ss_pred HHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhCh-hhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--Cch
Confidence 999875 55678889999999999999999999998876532 23456889999999999999999999999874 665
Q ss_pred H-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCHH
Q 009556 427 L-VMLNVLINAFGVAGKYKEALSVYHLMKDIGISPD-LVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRK 498 (532)
Q Consensus 427 ~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 498 (532)
. ..|+.+...|-..|+.+.|.+.+.+.+.. .|. ...++.|.+.|..+|+..+|++-|++..+ ++||..
T Consensus 421 fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfp 490 (966)
T KOG4626|consen 421 FADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFP 490 (966)
T ss_pred HHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCc
Confidence 4 68999999999999999999999999874 454 34788999999999999999999999987 778764
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.85 E-value=2.4e-16 Score=161.44 Aligned_cols=376 Identities=11% Similarity=0.004 Sum_probs=273.9
Q ss_pred CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHH
Q 009556 74 EFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNIL 153 (532)
Q Consensus 74 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~l 153 (532)
.|+...|..+...|.+.|++++|++.++...+.+ +.+...|..+..++...|++++|+.-|......+-..+.. ...+
T Consensus 157 ~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~ 234 (615)
T TIGR00990 157 KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQ-SAQA 234 (615)
T ss_pred CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHH-HHHH
Confidence 4677789999999999999999999999999875 4567789999999999999999999887765443111211 1111
Q ss_pred HHHHHhcCChhHHHHHHHHHHH---------------------------cCCCcCH-HHHHHHHHH---HHhcCChHHHH
Q 009556 154 LRGFLKKGLLGLGSRLLMVMED---------------------------MGICRNQ-ETYEILLDY---HVNAGRLDDTW 202 (532)
Q Consensus 154 i~~~~~~g~~~~A~~~~~~m~~---------------------------~~~~~~~-~~~~~li~~---~~~~~~~~~a~ 202 (532)
+..+........+...++.-.. ....+.. ..+..+... ....+++++|.
T Consensus 235 ~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~ 314 (615)
T TIGR00990 235 VERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAA 314 (615)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHH
Confidence 1111110001111111110000 0000000 001111100 12246789999
Q ss_pred HHHHHHHHCC-CCc-CHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 009556 203 LIINEMRSKG-FQL-NSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQ 280 (532)
Q Consensus 203 ~~~~~m~~~~-~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 280 (532)
+.|+...+.+ ..| ....+..+...+...|++++|+..+++..+.. +.....|..+...+...|++++|...|++..+
T Consensus 315 ~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 393 (615)
T TIGR00990 315 RAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALK 393 (615)
T ss_pred HHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999998765 233 45677888888899999999999999999874 23466888889999999999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHH
Q 009556 281 ESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIY 360 (532)
Q Consensus 281 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 360 (532)
... .+...|..+...+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|...++...+.. +.+...+
T Consensus 394 ~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~ 470 (615)
T TIGR00990 394 LNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVY 470 (615)
T ss_pred hCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 633 367888999999999999999999999998763 3356777788889999999999999999998764 5568889
Q ss_pred HHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHH
Q 009556 361 AILVDIYGQYGRFRDPEECIAALKLEGLQPSGS------MFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLI 434 (532)
Q Consensus 361 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 434 (532)
+.+...+...|++++|...|+.........+.. .++..+..+...|++++|.+++++..... +.+...+..+.
T Consensus 471 ~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la 549 (615)
T TIGR00990 471 NYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMA 549 (615)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 999999999999999999999988764321111 12222233445699999999999987764 33456788999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 009556 435 NAFGVAGKYKEALSVYHLMKDI 456 (532)
Q Consensus 435 ~~~~~~g~~~~A~~~~~~m~~~ 456 (532)
..+...|++++|.+.|++..+.
T Consensus 550 ~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 550 QLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999999999998764
No 20
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.83 E-value=2e-15 Score=154.47 Aligned_cols=406 Identities=11% Similarity=0.056 Sum_probs=259.0
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCH--hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChh
Q 009556 87 CCKLGDIDEAMALLAQMQALGFHPSS--ISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLG 164 (532)
Q Consensus 87 ~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 164 (532)
..+.|+++.|++.|++..+.. |+. ..+ .++..+...|+.++|+..+++..... +........+...+...|+++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHH
Confidence 357788888888888877663 432 233 77777777788888888888777211 122233333355777778888
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHH
Q 009556 165 LGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIR 244 (532)
Q Consensus 165 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 244 (532)
+|.++|+++.+..+ .+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++.
T Consensus 120 ~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 120 QALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 88888888877644 34556667777778888888888888887765 3444444444444444555655888888877
Q ss_pred HcCCCCCHHHHHHHHHHHhccCCHHHHHHHH------------------------------------------------H
Q 009556 245 EMGLSLDRQIYNSIIDTFGKYGELVEALEVF------------------------------------------------E 276 (532)
Q Consensus 245 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~------------------------------------------------~ 276 (532)
+.. +.+...+..+..++.+.|-...|.++. +
T Consensus 197 ~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~ 275 (822)
T PRK14574 197 RLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQ 275 (822)
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHH
Confidence 764 234555555555555555444444333 3
Q ss_pred HHHhC-CCCCCH-HHH----HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 009556 277 KMQQE-SIRPDI-VTW----NSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKD 350 (532)
Q Consensus 277 ~m~~~-~~~p~~-~~~----~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 350 (532)
.+... +..|.. ..| --.+-++...|++.++++.++.+...+.+....+-..+.++|...+++++|..++..+..
T Consensus 276 ~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~ 355 (822)
T PRK14574 276 NLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYY 355 (822)
T ss_pred HHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 32221 111211 111 123345666777888888888888777665566777788888888888888888887765
Q ss_pred cC-----CCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCC-----------CCC---HHHHHHHHHHHHhcCCHHHH
Q 009556 351 RG-----HGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGL-----------QPS---GSMFCILANAYAQQGLCEQT 411 (532)
Q Consensus 351 ~~-----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~li~~~~~~g~~~~A 411 (532)
.. .+++......|.-+|...+++++|..+++.+.+... .|+ ...+..++..+...|++.+|
T Consensus 356 ~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~A 435 (822)
T PRK14574 356 SDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTA 435 (822)
T ss_pred ccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHH
Confidence 43 122333346677777888888888888888776321 111 12234456667777888888
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhC
Q 009556 412 VKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESS 491 (532)
Q Consensus 412 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 491 (532)
++.++++.... +-|......+...+...|.+.+|.+.++..... -+-+..+......++...|++++|.++.+.+.+
T Consensus 436 e~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l-~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~- 512 (822)
T PRK14574 436 QKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL-APRSLILERAQAETAMALQEWHQMELLTDDVIS- 512 (822)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh-
Confidence 88888886654 557777778888888888888888888665554 122445666777777778888888888877776
Q ss_pred CCCCCHHHHHHHH
Q 009556 492 GCTPDRKARQILQ 504 (532)
Q Consensus 492 g~~p~~~t~~~l~ 504 (532)
..|+......|-
T Consensus 513 -~~Pe~~~~~~l~ 524 (822)
T PRK14574 513 -RSPEDIPSQELD 524 (822)
T ss_pred -hCCCchhHHHHH
Confidence 556665444443
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.83 E-value=1.2e-15 Score=159.13 Aligned_cols=382 Identities=11% Similarity=-0.005 Sum_probs=287.6
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHH
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (532)
+...+..+...+.+.|++++|+++|++..+.. +.+...+..++..+...|++++|+..++++.+.. +.+.. +..+..
T Consensus 48 ~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~ 124 (765)
T PRK10049 48 PARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAY 124 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHH
Confidence 44568889999999999999999999988874 5567778889999999999999999999998874 45666 888999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCH------HhHHHHHHHHHc
Q 009556 156 GFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNS------FVYGKVIGLYRD 229 (532)
Q Consensus 156 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~------~~~~~ll~~~~~ 229 (532)
++...|+.++|+..++++.+..+ .+...+..+...+...+..+.|++.++.... .|+. .....+++....
T Consensus 125 ~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~ 200 (765)
T PRK10049 125 VYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFM 200 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999998654 4566667788888899999999998886654 2221 112222332222
Q ss_pred -----CCCh---HHHHHHHHHHHHc-CCCCCHH-HH----HHHHHHHhccCCHHHHHHHHHHHHhCCCC-CCHHHHHHHH
Q 009556 230 -----NGMW---KKAVGIVEEIREM-GLSLDRQ-IY----NSIIDTFGKYGELVEALEVFEKMQQESIR-PDIVTWNSLI 294 (532)
Q Consensus 230 -----~~~~---~~a~~~~~~~~~~-~~~~~~~-~~----~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li 294 (532)
.+++ ++|++.++.+.+. ...|+.. .+ ...+..+...|++++|+..|+.+.+.+.. |+.. -..+.
T Consensus 201 ~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a-~~~la 279 (765)
T PRK10049 201 PTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWA-QRWVA 279 (765)
T ss_pred cccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHH-HHHHH
Confidence 2234 6788888888754 1222221 11 11133456779999999999999887532 3322 22257
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCC-----------CCC---H
Q 009556 295 RWHCKAGDVAKALELFTQMQEQGFYP---DPKIFITIISCLGELGKWDVIKKNFENMKDRGH-----------GKI---G 357 (532)
Q Consensus 295 ~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~ 357 (532)
..|...|++++|+..|+++.+..... .......+..++...|++++|...++.+.+... .|+ .
T Consensus 280 ~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~ 359 (765)
T PRK10049 280 SAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWL 359 (765)
T ss_pred HHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHH
Confidence 78999999999999999987643211 134456667788999999999999999887532 122 2
Q ss_pred hHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHH
Q 009556 358 AIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAF 437 (532)
Q Consensus 358 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 437 (532)
..+..+...+...|+.++|+++++++.... +.+...+..+...+...|++++|++.+++..... +.+...+..++..+
T Consensus 360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~a 437 (765)
T PRK10049 360 QGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTA 437 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHH
Confidence 345677888999999999999999998764 4567888999999999999999999999998863 33466777788899
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009556 438 GVAGKYKEALSVYHLMKDIGISPDLVTYSTLM 469 (532)
Q Consensus 438 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 469 (532)
...|++++|..+++++++. .|+......+-
T Consensus 438 l~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~~ 467 (765)
T PRK10049 438 LDLQEWRQMDVLTDDVVAR--EPQDPGVQRLA 467 (765)
T ss_pred HHhCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 9999999999999999875 45554443343
No 22
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.81 E-value=1.2e-14 Score=130.05 Aligned_cols=411 Identities=15% Similarity=0.127 Sum_probs=286.9
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcC--CHHH-HHHHHHHHHHCC-----------
Q 009556 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVG--RTLE-ADAIFQEMVCFG----------- 142 (532)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~--~~~~-A~~~~~~~~~~g----------- 142 (532)
+.+=|.|++. ..+|.+.++.-+|+.|.+.|++.+...-..+++..+-.+ +..- -++.|-.|.+.|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 4455666665 567999999999999999998888887777766544321 1111 112222232221
Q ss_pred --------CCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 009556 143 --------FNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQ 214 (532)
Q Consensus 143 --------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 214 (532)
.+.+..++..+|.+.|+.-..+.|.+++++-.....+.+..+||.+|.+-.-.. ..++..+|....+.
T Consensus 195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMT 270 (625)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcC
Confidence 245678889999999999899999999998888777788889999888654332 26788899988899
Q ss_pred cCHHhHHHHHHHHHcCCChHHH----HHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH-HHHHHHHHHhC----CCCC
Q 009556 215 LNSFVYGKVIGLYRDNGMWKKA----VGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVE-ALEVFEKMQQE----SIRP 285 (532)
Q Consensus 215 ~~~~~~~~ll~~~~~~~~~~~a----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~----~~~p 285 (532)
||..|+|.++.+.++.|+++.| .+++.+|++.|+.|+..+|..+|..+++.++..+ |..++.++... .++|
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp 350 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKP 350 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccC
Confidence 9999999999999999987654 5678888899999999999999998888887644 45555554432 2222
Q ss_pred ----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Q 009556 286 ----DIVTWNSLIRWHCKAGDVAKALELFTQMQEQG----FYPD---PKIFITIISCLGELGKWDVIKKNFENMKDRGHG 354 (532)
Q Consensus 286 ----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 354 (532)
|..-|..-+..|.+..+.+-|.++..-+.... +.|+ ..-|..+....+.....+.....|+.+...-..
T Consensus 351 ~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~ 430 (625)
T KOG4422|consen 351 ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYF 430 (625)
T ss_pred CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceec
Confidence 44556677777888888888887776655321 2333 234566777778888888888889888887777
Q ss_pred CCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CH--------H-----HHHHHH-----
Q 009556 355 KIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQG-LC--------E-----QTVKVL----- 415 (532)
Q Consensus 355 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~--------~-----~A~~~~----- 415 (532)
|+..+...++++..-.++++-.-++|..++..|..-+...-.-++..+++.. +. . -|..++
T Consensus 431 p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~ 510 (625)
T KOG4422|consen 431 PHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYES 510 (625)
T ss_pred CCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888888888888888888888888877765444444444444444433 11 0 011111
Q ss_pred --HHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCCcChHHHHHHHHH
Q 009556 416 --QLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGI----SPDLVTYSTLMKAFIRAKKFHKVPEIYKQME 489 (532)
Q Consensus 416 --~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 489 (532)
.+|... .......+...-.+.+.|+.++|+++|..+.+.+- .|......-+++...+.++...|...++-|.
T Consensus 511 ~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~ 588 (625)
T KOG4422|consen 511 QPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLAS 588 (625)
T ss_pred hHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 123322 33445567777888899999999999998855432 2333344466677778888899999999887
Q ss_pred hCCCC
Q 009556 490 SSGCT 494 (532)
Q Consensus 490 ~~g~~ 494 (532)
..+..
T Consensus 589 ~~n~~ 593 (625)
T KOG4422|consen 589 AFNLP 593 (625)
T ss_pred HcCch
Confidence 65443
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.79 E-value=2.9e-14 Score=149.16 Aligned_cols=405 Identities=13% Similarity=0.057 Sum_probs=256.9
Q ss_pred CCChhhHHHH-HHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCChHhHH
Q 009556 74 EFSGNSYNKS-IQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALAS-VGRTLEADAIFQEMVCFGFNPKLRFYN 151 (532)
Q Consensus 74 ~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~~~~~~A~~~~~~~~~~g~~~~~~~~~ 151 (532)
.|++...... .+.|.+.|++++|++++.++.+.+ +.+......+..+|.. .++ +.+..++.. .+..+...+.
T Consensus 178 ~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ 251 (987)
T PRK09782 178 SPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRI 251 (987)
T ss_pred CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHH
Confidence 3344434444 889999999999999999999986 4556667777778877 466 777777553 2346788899
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCC-cCHHHHHH------------------------------HHHHHHhcCChHH
Q 009556 152 ILLRGFLKKGLLGLGSRLLMVMEDMGIC-RNQETYEI------------------------------LLDYHVNAGRLDD 200 (532)
Q Consensus 152 ~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~------------------------------li~~~~~~~~~~~ 200 (532)
.+...|.+.|+.++|.++++++...... |...+|.- ++..+.+.++++.
T Consensus 252 ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (987)
T PRK09782 252 TYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDA 331 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHH
Confidence 9999999999999999999887653221 22222211 1333344444443
Q ss_pred HHHHHH-----------------------------HHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHc-----
Q 009556 201 TWLIIN-----------------------------EMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREM----- 246 (532)
Q Consensus 201 a~~~~~-----------------------------~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----- 246 (532)
+.++.. .|.+.. +-+......+.-...+.|+.++|.++++.....
T Consensus 332 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 410 (987)
T PRK09782 332 AQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDAR 410 (987)
T ss_pred HHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccc
Confidence 333211 111110 001111111112223344444444444433221
Q ss_pred ----------------------------------------------------------CC-CC--CHHHHHHHHHHHhcc
Q 009556 247 ----------------------------------------------------------GL-SL--DRQIYNSIIDTFGKY 265 (532)
Q Consensus 247 ----------------------------------------------------------~~-~~--~~~~~~~li~~~~~~ 265 (532)
+. ++ +...|..+..++..
T Consensus 411 ~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~- 489 (987)
T PRK09782 411 LSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD- 489 (987)
T ss_pred cCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-
Confidence 00 12 44455555555554
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 009556 266 GELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNF 345 (532)
Q Consensus 266 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 345 (532)
++.++|...+.+.... .|+......+...+...|++++|...|+++... .|+...+..+...+.+.|+.++|...+
T Consensus 490 ~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l 565 (987)
T PRK09782 490 TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWL 565 (987)
T ss_pred CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5666777766665554 244433333344445788888888888876543 344444556666777888888888888
Q ss_pred HHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCC
Q 009556 346 ENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEP 425 (532)
Q Consensus 346 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 425 (532)
+...+.. +.....+..+.......|++++|...+++..+.. |+...|..+...+.+.|++++|...+++..... +.
T Consensus 566 ~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd 641 (987)
T PRK09782 566 QQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELE-PN 641 (987)
T ss_pred HHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence 8887764 3333333344444445688888888888887654 456778888888888888888888888887764 44
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCH
Q 009556 426 NLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDR 497 (532)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 497 (532)
+...++.+..++...|++++|...+++..+.. +-+...+..+..++...|++++|...+++..+ +.|+.
T Consensus 642 ~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~ 710 (987)
T PRK09782 642 NSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQ 710 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCC
Confidence 56677777788888888888888888887753 23566778888888888888888888888876 44554
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.78 E-value=1e-13 Score=145.15 Aligned_cols=204 Identities=10% Similarity=0.030 Sum_probs=126.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHH
Q 009556 301 GDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECI 380 (532)
Q Consensus 301 g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 380 (532)
+++++|+..+.+.... .|+......+...+...|++++|...++.+... +++...+..+...+.+.|+.++|...+
T Consensus 490 ~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l 565 (987)
T PRK09782 490 TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWL 565 (987)
T ss_pred CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3444455544444432 234333323333445667777777777765443 233334455566667777777777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 009556 381 AALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISP 460 (532)
Q Consensus 381 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 460 (532)
+...+.+ +.+...+..+.......|++++|...+++..+. .|+...|..+..++.+.|++++|...+++..+.. +.
T Consensus 566 ~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd 641 (987)
T PRK09782 566 QQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PN 641 (987)
T ss_pred HHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence 7776654 222223333333444557888888888877764 4567777778888888888888888888887753 22
Q ss_pred CHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHHhhhh
Q 009556 461 DLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTP-DRKARQILQSALVVLEQRR 514 (532)
Q Consensus 461 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~l~~a~~~~~~~~ 514 (532)
+...+..+..++...|++++|++.+++..+ ..| +...+..+..++...++.+
T Consensus 642 ~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~--l~P~~~~a~~nLA~al~~lGd~~ 694 (987)
T PRK09782 642 NSNYQAALGYALWDSGDIAQSREMLERAHK--GLPDDPALIRQLAYVNQRLDDMA 694 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHH
Confidence 455677777778888888888888888876 455 3445666666666655543
No 25
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=8.9e-15 Score=130.84 Aligned_cols=340 Identities=16% Similarity=0.236 Sum_probs=158.1
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 009556 112 SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDY 191 (532)
Q Consensus 112 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 191 (532)
..++..+|.++|+--..++|.++|++......+.+..+||.+|.+-.-.- ..++..+|......||..|+|+++..
T Consensus 207 ~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL~c 282 (625)
T KOG4422|consen 207 DETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALLSC 282 (625)
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHHHH
Confidence 34444444444444444444444444443333444444444443322111 13344444444444444444444444
Q ss_pred HHhcCChHH----HHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHH-HHHHHHHHHHc----C----CCCCHHHHHHH
Q 009556 192 HVNAGRLDD----TWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKK-AVGIVEEIREM----G----LSLDRQIYNSI 258 (532)
Q Consensus 192 ~~~~~~~~~----a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~----~----~~~~~~~~~~l 258 (532)
..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++... . .+.+...|...
T Consensus 283 ~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~A 362 (625)
T KOG4422|consen 283 AAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSA 362 (625)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHH
Confidence 444444332 22334444444444444444444444444433322 22222222211 0 01123333344
Q ss_pred HHHHhccCCHHHHHHHHHHHHhC----CCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009556 259 IDTFGKYGELVEALEVFEKMQQE----SIRPD---IVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISC 331 (532)
Q Consensus 259 i~~~~~~g~~~~A~~~~~~m~~~----~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 331 (532)
+..|.+..+.+-|.++-.-+... -+.|+ ..-|..+....|+....+.-+.+|+.|.-.-.-|+..+...++++
T Consensus 363 M~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA 442 (625)
T KOG4422|consen 363 MSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRA 442 (625)
T ss_pred HHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHH
Confidence 44444444444444443332211 01111 122333444444444555555555555444444455555555555
Q ss_pred HHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcC-Cc--------------------ccHHHHHHHHHHcCCCC
Q 009556 332 LGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYG-RF--------------------RDPEECIAALKLEGLQP 390 (532)
Q Consensus 332 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~--------------------~~a~~~~~~~~~~~~~~ 390 (532)
..-.++++-.-+++.++...|..........++..+++.. .. +..+..-.++.+. ..
T Consensus 443 ~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~--~~ 520 (625)
T KOG4422|consen 443 LDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ--DW 520 (625)
T ss_pred HhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc--cC
Confidence 5555555555555555544443333333333333333322 11 0011111223333 34
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhccCC-C---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009556 391 SGSMFCILANAYAQQGLCEQTVKVLQLMEPEG-I---EPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIG 457 (532)
Q Consensus 391 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 457 (532)
.....+.++-.+.+.|..++|.++|....+.+ - .|.......+++.-.+.++...|..+++-|...+
T Consensus 521 ~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 521 PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 45567777788889999999999999885443 2 3344444466677777888899999988887654
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.76 E-value=2e-13 Score=139.97 Aligned_cols=382 Identities=13% Similarity=0.012 Sum_probs=276.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCh--HhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc
Q 009556 118 LIEALASVGRTLEADAIFQEMVCFGFNPKL--RFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNA 195 (532)
Q Consensus 118 li~~~~~~~~~~~A~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 195 (532)
-+-...+.|+++.|++.|++..+.. |+. ..+ .++..+...|+.++|+..+++.... -.........+...+...
T Consensus 40 ~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~ 115 (822)
T PRK14574 40 SLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNE 115 (822)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHc
Confidence 3444568999999999999999764 443 344 8888899999999999999998831 112223333346688889
Q ss_pred CChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 009556 196 GRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVF 275 (532)
Q Consensus 196 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 275 (532)
|++++|+++|+++.+.... +...+..++..+...++.++|++.++.+.+. .|+...+..++..+...++..+|++.+
T Consensus 116 gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ 192 (822)
T PRK14574 116 KRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQAS 192 (822)
T ss_pred CCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHH
Confidence 9999999999999987544 5677778888999999999999999999887 455556655555555567776799999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH----------------------------------------------
Q 009556 276 EKMQQESIRPDIVTWNSLIRWHCKAGDVAKALEL---------------------------------------------- 309 (532)
Q Consensus 276 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~---------------------------------------------- 309 (532)
+++.+.... +...+..+..+..+.|-...|+++
T Consensus 193 ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~al 271 (822)
T PRK14574 193 SEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKAL 271 (822)
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHH
Confidence 999886422 455555555555555544333333
Q ss_pred --HHHHHH-CCCCCCH-HH----HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHH
Q 009556 310 --FTQMQE-QGFYPDP-KI----FITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIA 381 (532)
Q Consensus 310 --~~~m~~-~~~~~~~-~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 381 (532)
++.+.. .+..|.. .. ..-.+-++...++..++++.++.+...+.+....+-..+.++|...+++++|+.+++
T Consensus 272 a~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~ 351 (822)
T PRK14574 272 ADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILS 351 (822)
T ss_pred HHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 223222 1112321 11 122344667888999999999999988876667788899999999999999999999
Q ss_pred HHHHcCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCC-----------CC--CHH-HHHHHHHHHHhcCC
Q 009556 382 ALKLEGL-----QPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGI-----------EP--NLV-MLNVLINAFGVAGK 442 (532)
Q Consensus 382 ~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----------~p--~~~-~~~~li~~~~~~g~ 442 (532)
.+..... .++......|..+|...+++++|..+++.+.+... .| |-. .+..++..+...|+
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gd 431 (822)
T PRK14574 352 SLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALND 431 (822)
T ss_pred HHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCC
Confidence 9866431 22333357889999999999999999999986311 12 222 23456677889999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHH
Q 009556 443 YKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRK-ARQILQSALVVL 510 (532)
Q Consensus 443 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~l~~a~~~~ 510 (532)
+.+|++.++++.... +-|......+.+.+...|++.+|.+.++.... +.|+.. +......+....
T Consensus 432 l~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~al~l 497 (822)
T PRK14574 432 LPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAETAMAL 497 (822)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHHHHhh
Confidence 999999999998753 44888899999999999999999999987776 467643 333333333333
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.76 E-value=4.7e-14 Score=138.70 Aligned_cols=428 Identities=12% Similarity=0.094 Sum_probs=252.4
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCC--CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh--HhH
Q 009556 75 FSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFH--PSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKL--RFY 150 (532)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~--~~~ 150 (532)
-|++..|.|.+.|.-.|+++.+..+...+...... .-..+|-.+.+++-..|++++|...|.+..+.. ++. ..+
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~ 345 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPL 345 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccc
Confidence 46777888999999999999999999988765311 123457888999999999999999999888654 443 444
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC----ChHHHHHHHHHHHHCCCCcCHHhHHHHHHH
Q 009556 151 NILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAG----RLDDTWLIINEMRSKGFQLNSFVYGKVIGL 226 (532)
Q Consensus 151 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~----~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 226 (532)
--|...|.+.|+++.+...|+.+..... -+..+...|...|...+ ..+.|..++.+..+.- +.|...|..+...
T Consensus 346 ~GlgQm~i~~~dle~s~~~fEkv~k~~p-~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql 423 (1018)
T KOG2002|consen 346 VGLGQMYIKRGDLEESKFCFEKVLKQLP-NNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQL 423 (1018)
T ss_pred cchhHHHHHhchHHHHHHHHHHHHHhCc-chHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHH
Confidence 5688899999999999999999887532 45556666666676664 4566666766666553 3367777777766
Q ss_pred HHcCCChHHHHHHHHHH----HHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC---CCCCCH------HHHHHH
Q 009556 227 YRDNGMWKKAVGIVEEI----REMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQE---SIRPDI------VTWNSL 293 (532)
Q Consensus 227 ~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~------~~~~~l 293 (532)
+-...-+.. +..|..+ ...+..+.+...|.+...+...|+++.|...|...... ...+|. .+--.+
T Consensus 424 ~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNl 502 (1018)
T KOG2002|consen 424 LEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNL 502 (1018)
T ss_pred HHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHH
Confidence 666555444 6655544 34455577888888888888899999999988887654 122222 122234
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCC
Q 009556 294 IRWHCKAGDVAKALELFTQMQEQGFYPDP-KIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGR 372 (532)
Q Consensus 294 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 372 (532)
...+-..++++.|.+.|..+... .|.- ..|..++......+...+|...+......+ ..++..+..+...+.+...
T Consensus 503 arl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~ 579 (1018)
T KOG2002|consen 503 ARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSE 579 (1018)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhh
Confidence 44555566777777777777654 2222 222222222223345556666666655443 3344455555555555555
Q ss_pred cccHHHHHHHHHHcC-CCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Q 009556 373 FRDPEECIAALKLEG-LQPSGSMFCILANAYAQ------------QGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGV 439 (532)
Q Consensus 373 ~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~------------~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 439 (532)
+.-|.+-|+.+.+.- ..+|..+.-.|...|.+ .+..++|+++|.+..+.. +-|...-|.+.-.++.
T Consensus 580 ~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~ 658 (1018)
T KOG2002|consen 580 WKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAE 658 (1018)
T ss_pred hcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhh
Confidence 555555444443221 12333333333333221 123445555555554443 3344444555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHHhh
Q 009556 440 AGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESS-GCTPDRKARQILQSALVVLEQ 512 (532)
Q Consensus 440 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~l~~a~~~~~~ 512 (532)
.|++.+|..+|.+.++... -+..+|-.+..+|...|++..|+++|+...+. +-.-+......|.+++...++
T Consensus 659 kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~ 731 (1018)
T KOG2002|consen 659 KGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGK 731 (1018)
T ss_pred ccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhh
Confidence 5555555555555554322 12233555555555555555555555554433 222334444555555544443
No 28
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.73 E-value=1.2e-13 Score=136.02 Aligned_cols=407 Identities=13% Similarity=0.091 Sum_probs=299.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHH
Q 009556 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSS--ISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (532)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (532)
+|-.+.++|-..|++++|...|.+..... ++. ..+--+.+.+.+.|+++.+...|+...+.. +.+..+...|...
T Consensus 309 s~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~L 385 (1018)
T KOG2002|consen 309 SFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCL 385 (1018)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhH
Confidence 35568888999999999999999888763 443 345568899999999999999999999865 5566788888888
Q ss_pred HHhcC----ChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHH----HHCCCCcCHHhHHHHHHHHH
Q 009556 157 FLKKG----LLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEM----RSKGFQLNSFVYGKVIGLYR 228 (532)
Q Consensus 157 ~~~~g----~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m----~~~~~~~~~~~~~~ll~~~~ 228 (532)
|+..+ ..+.|..++.+..+.- +.|...|..+...+-...-+.. +..|... ...+-.+.+...|.+.....
T Consensus 386 ya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf 463 (1018)
T KOG2002|consen 386 YAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHF 463 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHH
Confidence 88775 4567777777776653 3577788888887766554443 6666543 45566688899999999999
Q ss_pred cCCChHHHHHHHHHHHHc---CCCCCH------HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHH
Q 009556 229 DNGMWKKAVGIVEEIREM---GLSLDR------QIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIV-TWNSLIRWHC 298 (532)
Q Consensus 229 ~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~ 298 (532)
..|++++|...|...... ...++. .+-..+...+-..++.+.|.+.|..+... .|.-+ .|-.+....-
T Consensus 464 ~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~ 541 (1018)
T KOG2002|consen 464 RLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMAR 541 (1018)
T ss_pred HhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHH
Confidence 999999999999988765 122222 22333555666677999999999998875 23332 2333332222
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCC-CCCHhHHHHHHHHHHh--------
Q 009556 299 KAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGH-GKIGAIYAILVDIYGQ-------- 369 (532)
Q Consensus 299 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~-------- 369 (532)
..+...+|..+++...... ..++..++.+...+.+...+..|.+-|..+.+.-. .+|+.+.-+|.+.|.+
T Consensus 542 ~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn 620 (1018)
T KOG2002|consen 542 DKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRN 620 (1018)
T ss_pred hccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccC
Confidence 3467889999999887642 33455555566677888888888887776665422 2466666666665543
Q ss_pred ----cCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHH
Q 009556 370 ----YGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKE 445 (532)
Q Consensus 370 ----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 445 (532)
.+..++|+++|.++.+.. +.|...-|.+.-.++..|++.+|..+|.+..+.. .-+..+|-.+.++|..+|++..
T Consensus 621 ~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~ 698 (1018)
T KOG2002|consen 621 PEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRL 698 (1018)
T ss_pred hHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHH
Confidence 234567888888888764 4466777888888999999999999999998774 3355678889999999999999
Q ss_pred HHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCH
Q 009556 446 ALSVYHLMKDI-GISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDR 497 (532)
Q Consensus 446 A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 497 (532)
|+++|+...+. ....+......|.+++.+.|.+.+|.+.+...+. ..|..
T Consensus 699 AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~--~~p~~ 749 (1018)
T KOG2002|consen 699 AIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH--LAPSN 749 (1018)
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hCCcc
Confidence 99999987643 4455777889999999999999999998888776 45544
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.70 E-value=5.9e-14 Score=126.56 Aligned_cols=432 Identities=13% Similarity=0.087 Sum_probs=288.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCC----ChHhHHHHH
Q 009556 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYA-SLIEALASVGRTLEADAIFQEMVCFGFNP----KLRFYNILL 154 (532)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~li~~~~~~~~~~~A~~~~~~~~~~g~~~----~~~~~~~li 154 (532)
...|.+.|..+.-+.+|+..|+-+.+...-||..... .+...+.+...+.+|++.|+..+..-... ...+.+.+.
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 3445666777777888999998888777667665433 45567788888999999888777542111 123445555
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcC------------HHhHHH
Q 009556 155 RGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLN------------SFVYGK 222 (532)
Q Consensus 155 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~------------~~~~~~ 222 (532)
-.+.+.|.++.|+..|+...+. .||..+-..|+-++..-|+.++..+.|.+|..-...|| ....+.
T Consensus 284 vtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~e 361 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNE 361 (840)
T ss_pred eeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHH
Confidence 5677889999999999988764 37777666666667778889999999999876533332 222222
Q ss_pred HHH-----HHHcCC--ChHHHHHHHHHHHHcCCCCCHH-------------HHHHH--------HHHHhccCCHHHHHHH
Q 009556 223 VIG-----LYRDNG--MWKKAVGIVEEIREMGLSLDRQ-------------IYNSI--------IDTFGKYGELVEALEV 274 (532)
Q Consensus 223 ll~-----~~~~~~--~~~~a~~~~~~~~~~~~~~~~~-------------~~~~l--------i~~~~~~g~~~~A~~~ 274 (532)
.+. -.-+.+ +.++++-.--++..--+.|+-. .+.-| .--|.+.|+++.|.++
T Consensus 362 ai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aiei 441 (840)
T KOG2003|consen 362 AIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEI 441 (840)
T ss_pred HHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHH
Confidence 221 111111 1122221111111111122110 00000 1236788899988888
Q ss_pred HHHHHhCCCCCCHHHHHHHH------------------------------------HHHHHcCCHHHHHHHHHHHHHCCC
Q 009556 275 FEKMQQESIRPDIVTWNSLI------------------------------------RWHCKAGDVAKALELFTQMQEQGF 318 (532)
Q Consensus 275 ~~~m~~~~~~p~~~~~~~li------------------------------------~~~~~~g~~~~A~~~~~~m~~~~~ 318 (532)
+.-+.+..-+.-...-+.|- +.-..+|++++|.+.+++.....-
T Consensus 442 lkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nda 521 (840)
T KOG2003|consen 442 LKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDA 521 (840)
T ss_pred HHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCch
Confidence 87776542211111111110 011345788999999998876432
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHH
Q 009556 319 YPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCIL 398 (532)
Q Consensus 319 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 398 (532)
.-....| .+.-.+-..|++++|+..|-++...- ..+..+...+...|....+...|++++.+.... ++.|+...+.|
T Consensus 522 sc~ealf-niglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl 598 (840)
T KOG2003|consen 522 SCTEALF-NIGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKL 598 (840)
T ss_pred HHHHHHH-HhcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHH
Confidence 2111222 22334677899999999887765431 235667777888899999999999998877654 46688899999
Q ss_pred HHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC
Q 009556 399 ANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAF-IRAKK 477 (532)
Q Consensus 399 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~g~ 477 (532)
...|-+.|+-..|.+..-+--+. ++.|..+...|...|....-+++|+.+|++..- ++|+..-|..++..| .+.|+
T Consensus 599 ~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgn 675 (840)
T KOG2003|consen 599 ADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGN 675 (840)
T ss_pred HHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhccc
Confidence 99999999999998876554443 577899999999999999999999999998764 689999999887655 56899
Q ss_pred cChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhhccccc
Q 009556 478 FHKVPEIYKQMESSGCTPDRKARQILQSALVVLEQRRCKQRLD 520 (532)
Q Consensus 478 ~~~a~~~~~~m~~~g~~p~~~t~~~l~~a~~~~~~~~~~~~~~ 520 (532)
+++|.++|+..... ++-|...+..|++.+..++-...++..|
T Consensus 676 yqka~d~yk~~hrk-fpedldclkflvri~~dlgl~d~key~~ 717 (840)
T KOG2003|consen 676 YQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLKDAKEYAD 717 (840)
T ss_pred HHHHHHHHHHHHHh-CccchHHHHHHHHHhccccchhHHHHHH
Confidence 99999999998753 7778999999999988877766555443
No 30
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.70 E-value=1.4e-13 Score=118.96 Aligned_cols=317 Identities=12% Similarity=0.091 Sum_probs=237.1
Q ss_pred cCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhccCCHHHH
Q 009556 195 AGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLD---RQIYNSIIDTFGKYGELVEA 271 (532)
Q Consensus 195 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A 271 (532)
+++.++|.++|-+|.+.... +..+-.+|.+.|.+.|..+.|+.+++.+.++.--+. ......|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 46778888888888875221 444556777888888999999998888877521111 23445667778899999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHH
Q 009556 272 LEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDP----KIFITIISCLGELGKWDVIKKNFEN 347 (532)
Q Consensus 272 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~ 347 (532)
+.+|..+.+.+.. -......|+..|-...+|++|++.-+++...+-.+.. ..|.-+...+....+.+.|...+.+
T Consensus 127 E~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 9999999875322 3456778999999999999999999998877654432 3456666666777889999999999
Q ss_pred HHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCH
Q 009556 348 MKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNL 427 (532)
Q Consensus 348 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 427 (532)
..+.+ +..+..--.+.+.+...|+++.|.+.++.+.+.+..--+.+...|..+|.+.|+.++....+..+.+.. ++.
T Consensus 206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~ 282 (389)
T COG2956 206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGA 282 (389)
T ss_pred HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCc
Confidence 98776 445556667888899999999999999999988766666778889999999999999999999988763 444
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CcChHHHHHHHHHhCCCCCCHHHHHHHH
Q 009556 428 VMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAK---KFHKVPEIYKQMESSGCTPDRKARQILQ 504 (532)
Q Consensus 428 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~t~~~l~ 504 (532)
..-..+...-....-.+.|...+.+-... +|+...+..|+....... ...+-..+++.|... -+
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge-----------~l 349 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE-----------QL 349 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH-----------HH
Confidence 44455555555566667777666555443 699999999998776543 344555566666542 34
Q ss_pred HHHHHHhhhhhccccchhhhhhhhe
Q 009556 505 SALVVLEQRRCKQRLDIFVFHVLFC 529 (532)
Q Consensus 505 ~a~~~~~~~~~~~~~~~~~~~~~~~ 529 (532)
+.-..+..++|.+..-.+.||+|-|
T Consensus 350 ~~~~~YRC~~CGF~a~~l~W~CPsC 374 (389)
T COG2956 350 RRKPRYRCQNCGFTAHTLYWHCPSC 374 (389)
T ss_pred hhcCCceecccCCcceeeeeeCCCc
Confidence 4445567789999999999999988
No 31
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.67 E-value=5.1e-13 Score=120.62 Aligned_cols=392 Identities=14% Similarity=0.099 Sum_probs=252.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCH------hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHH
Q 009556 85 QYCCKLGDIDEAMALLAQMQALGFHPSS------ISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFL 158 (532)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~------~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 158 (532)
+.+.+.+++.+|++.|+..... .|+. ...+.+...+.+.|+++.|+..|+...+. .|+..+--.|+-++.
T Consensus 245 ni~~kkr~fskaikfyrmaldq--vpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f 320 (840)
T KOG2003|consen 245 NIHFKKREFSKAIKFYRMALDQ--VPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAF 320 (840)
T ss_pred ceeeehhhHHHHHHHHHHHHhh--ccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhhe
Confidence 4566778888999988877665 3332 23455555667889999999999988876 377666555555555
Q ss_pred hcCChhHHHHHHHHHHHcCCCc------------CHHHHHHHH-----HHHHhcC--ChHHHHHHHHHHHHCCCCcCHHh
Q 009556 159 KKGLLGLGSRLLMVMEDMGICR------------NQETYEILL-----DYHVNAG--RLDDTWLIINEMRSKGFQLNSFV 219 (532)
Q Consensus 159 ~~g~~~~A~~~~~~m~~~~~~~------------~~~~~~~li-----~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~ 219 (532)
--|+-+...+.|.+|......+ +....+.-| .-.-+.+ +.++++-.-.++..--+.|+-..
T Consensus 321 ~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~ 400 (840)
T KOG2003|consen 321 AIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA 400 (840)
T ss_pred ecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc
Confidence 6688888888888887643222 222222111 1111111 11111111111111111111100
Q ss_pred -------------H--------HHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHH-------------------------
Q 009556 220 -------------Y--------GKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQ------------------------- 253 (532)
Q Consensus 220 -------------~--------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------------------- 253 (532)
+ ..-...+.+.|+++.|.++++-+.+..-.....
T Consensus 401 g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad 480 (840)
T KOG2003|consen 401 GCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYAD 480 (840)
T ss_pred ccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHH
Confidence 0 001123566677777766666554432111111
Q ss_pred ------HHHHH-----HHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 009556 254 ------IYNSI-----IDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDP 322 (532)
Q Consensus 254 ------~~~~l-----i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 322 (532)
-||.- .+.....|++++|.+.+++.....-.-....||+ .-.+-..|+.++|++.|-++... +..+.
T Consensus 481 ~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~i-l~nn~ 558 (840)
T KOG2003|consen 481 IALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI-LLNNA 558 (840)
T ss_pred HHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH-HHhhH
Confidence 11111 1112346889999999999887522111222322 22356789999999999987653 33467
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009556 323 KIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAY 402 (532)
Q Consensus 323 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 402 (532)
.+...+...|....+...|++++.+.... ++.|+.+.+.|.+.|-+.|+-..|.+.+-+--+- ++-+..+...|...|
T Consensus 559 evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayy 636 (840)
T KOG2003|consen 559 EVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYY 636 (840)
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHH
Confidence 77788888999999999999998887654 5778999999999999999999998876543322 355777888888889
Q ss_pred HhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChH
Q 009556 403 AQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAF-GVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKV 481 (532)
Q Consensus 403 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 481 (532)
....-+++++.+|++..- +.|+..-|..|+..| .+.|+++.|+++++...+. ++-|......|++.+...|- .++
T Consensus 637 idtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl-~d~ 712 (840)
T KOG2003|consen 637 IDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL-KDA 712 (840)
T ss_pred HhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc-hhH
Confidence 999999999999998754 589999999888655 5689999999999998764 67788888888888877764 344
Q ss_pred HHHHHHH
Q 009556 482 PEIYKQM 488 (532)
Q Consensus 482 ~~~~~~m 488 (532)
.++-+++
T Consensus 713 key~~kl 719 (840)
T KOG2003|consen 713 KEYADKL 719 (840)
T ss_pred HHHHHHH
Confidence 4443333
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.66 E-value=6.4e-12 Score=123.16 Aligned_cols=387 Identities=13% Similarity=0.116 Sum_probs=205.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCC
Q 009556 83 SIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGL 162 (532)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 162 (532)
..+.+...|++++|.+++.+.++.. +.+...|..|...|-..|+.+++...+-.+--.. +-|...|..+.....+.|.
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGN 222 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhccc
Confidence 3344445588888888888887764 5567778888888888888888877665554433 4566778888888888888
Q ss_pred hhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHH----HHHHHHHcCCChHHHHH
Q 009556 163 LGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYG----KVIGLYRDNGMWKKAVG 238 (532)
Q Consensus 163 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~----~ll~~~~~~~~~~~a~~ 238 (532)
++.|.-.|.+..+..+ ++...+---+..|-+.|+...|.+.|.++.....+.|..-+. .++..+...++-+.|.+
T Consensus 223 i~qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 223 INQARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 8888888888877644 444444455667777888888888888887764432332222 23344555666677777
Q ss_pred HHHHHHHc-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Q 009556 239 IVEEIREM-GLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQE-- 315 (532)
Q Consensus 239 ~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-- 315 (532)
.++..... +-..+...++.++..|.+...++.|......+......+|..-|.+--. ++ .-+.-...
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~-----~~-----~~~~~~~~~~ 371 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDER-----RR-----EEPNALCEVG 371 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhh-----cc-----ccccccccCC
Confidence 76666552 1223445566677777777777777777666665444444433311000 00 00000000
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC--CCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHH
Q 009556 316 QGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRG--HGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGS 393 (532)
Q Consensus 316 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 393 (532)
.+..++... ..+.-++.+....+....+...+.... ..-+...|.-+.++|...|++.+|..+|..+......-+..
T Consensus 372 ~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~ 450 (895)
T KOG2076|consen 372 KELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAF 450 (895)
T ss_pred CCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchh
Confidence 011111111 111122223333333333333333333 22233444555555555555555555555555443333444
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------CCCCCCHHHH
Q 009556 394 MFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKD--------IGISPDLVTY 465 (532)
Q Consensus 394 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~~~~p~~~~~ 465 (532)
.|-.+...|...|.+++|.+.++...... +-+...-..|...+-+.|+.++|.+.++.+.. .+..|+....
T Consensus 451 vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~ 529 (895)
T KOG2076|consen 451 VWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRIL 529 (895)
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHH
Confidence 55555555555555555555555554431 22223333444445555555555555554321 1233333333
Q ss_pred HHHHHHHHhcCCcChHHHH
Q 009556 466 STLMKAFIRAKKFHKVPEI 484 (532)
Q Consensus 466 ~~l~~~~~~~g~~~~a~~~ 484 (532)
......+.+.|+.++-...
T Consensus 530 ~~r~d~l~~~gk~E~fi~t 548 (895)
T KOG2076|consen 530 AHRCDILFQVGKREEFINT 548 (895)
T ss_pred HHHHHHHHHhhhHHHHHHH
Confidence 3444444555554443333
No 33
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.64 E-value=9.6e-11 Score=110.90 Aligned_cols=418 Identities=11% Similarity=0.074 Sum_probs=225.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCChHhHHHHHHHHH
Q 009556 83 SIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMV----CFGFNPKLRFYNILLRGFL 158 (532)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~----~~g~~~~~~~~~~li~~~~ 158 (532)
|.-+|++..-|+.|..+++...+. ++.+...|.+-...=-.+|+.+....+.++.. ..|+..+...|-.=...|-
T Consensus 412 LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e 490 (913)
T KOG0495|consen 412 LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACE 490 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHh
Confidence 445666777788888888887765 56777778777777677788777777766543 4566666666666666666
Q ss_pred hcCChhHHHHHHHHHHHcCCCc--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHH
Q 009556 159 KKGLLGLGSRLLMVMEDMGICR--NQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKA 236 (532)
Q Consensus 159 ~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 236 (532)
+.|..-.+..+.......|+.- -..||+.-...|.+.+.++-|..+|....+. ++-+...|......--..|..+..
T Consensus 491 ~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl 569 (913)
T KOG0495|consen 491 DAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESL 569 (913)
T ss_pred hcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHH
Confidence 6666666666666665555432 2235666666666666666666666655543 222444444444444445555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 009556 237 VGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQ 316 (532)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 316 (532)
..+++++...- +-....|-.....+-..|+...|..++....+.... +...|-.-+.....+.++++|..+|.+....
T Consensus 570 ~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~ 647 (913)
T KOG0495|consen 570 EALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI 647 (913)
T ss_pred HHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc
Confidence 55555555442 223344444444455556666666655555544222 4445555555555555566666555555442
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHH
Q 009556 317 GFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFC 396 (532)
Q Consensus 317 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 396 (532)
.|+...|..-+..---++..++|.+++++.++.- +.-...|-.+.+.+.+.++.+.|.+.|..-.+. .+-....|-
T Consensus 648 --sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWl 723 (913)
T KOG0495|consen 648 --SGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWL 723 (913)
T ss_pred --CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHH
Confidence 3444444444444444455555555555554432 223344444555555555555554444433222 122233444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--------------------
Q 009556 397 ILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDI-------------------- 456 (532)
Q Consensus 397 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------------------- 456 (532)
.+...--+.|.+-.|..+++...-.+ +-|...|-..|++=.+.|..+.|..+..+..+.
T Consensus 724 lLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 724 LLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCccc
Confidence 44444444455555555555444332 334444555555555555555544443333211
Q ss_pred ---------CCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHHh
Q 009556 457 ---------GISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPD-RKARQILQSALVVLE 511 (532)
Q Consensus 457 ---------~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~l~~a~~~~~ 511 (532)
...-|+...-.+...+....++++|.+.|++..+ +.|| ..+|..+.+-....|
T Consensus 803 kTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk--~d~d~GD~wa~fykfel~hG 865 (913)
T KOG0495|consen 803 KTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVK--KDPDNGDAWAWFYKFELRHG 865 (913)
T ss_pred chHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCccchHHHHHHHHHHHhC
Confidence 0223444555555666666677777777777765 3343 345666665555555
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.64 E-value=2.6e-11 Score=118.92 Aligned_cols=306 Identities=13% Similarity=0.130 Sum_probs=203.6
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHH
Q 009556 75 FSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILL 154 (532)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li 154 (532)
.+...|-+|...|-+.|+.+++...+-.+-..+ +.|...|..+.....+.|.+++|.-.|.+.++.. +++...+---.
T Consensus 171 ~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers 248 (895)
T KOG2076|consen 171 RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERS 248 (895)
T ss_pred cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHH
Confidence 456789999999999999999998876665554 6677899999999999999999999999999876 56666666677
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCcCHHHH----HHHHHHHHhcCChHHHHHHHHHHHHC-CCCcCHHhHHHHHHHHHc
Q 009556 155 RGFLKKGLLGLGSRLLMVMEDMGICRNQETY----EILLDYHVNAGRLDDTWLIINEMRSK-GFQLNSFVYGKVIGLYRD 229 (532)
Q Consensus 155 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~----~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~ 229 (532)
..|-+.|+...|.+-|.++.....+.+..-. -..+..+...++-+.|++.++..... +-..+...++.++..+.+
T Consensus 249 ~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~ 328 (895)
T KOG2076|consen 249 SLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLK 328 (895)
T ss_pred HHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHH
Confidence 8899999999999999999986542232222 23456677788889999998887763 233456678888999999
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHH--------------------------HHHHHHhccCCHHHHHHHHHHHHhCC-
Q 009556 230 NGMWKKAVGIVEEIREMGLSLDRQIYN--------------------------SIIDTFGKYGELVEALEVFEKMQQES- 282 (532)
Q Consensus 230 ~~~~~~a~~~~~~~~~~~~~~~~~~~~--------------------------~li~~~~~~g~~~~A~~~~~~m~~~~- 282 (532)
...++.+............++|..-|. .++-++.+....+....+.....+..
T Consensus 329 ~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~ 408 (895)
T KOG2076|consen 329 NKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNV 408 (895)
T ss_pred hHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcC
Confidence 999999999888887766666654431 11112222222222333333333332
Q ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHH
Q 009556 283 -IRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYA 361 (532)
Q Consensus 283 -~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 361 (532)
+.-+...|.-+..+|...|++.+|+.+|..+......-+...|..+..+|...|..+.|.+.++.++... |.+...--
T Consensus 409 ~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri 487 (895)
T KOG2076|consen 409 WVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARI 487 (895)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhh
Confidence 2223344555555666666666666666666544333345555556666666666666666666655543 33344444
Q ss_pred HHHHHHHhcCCcccHHHHHHHH
Q 009556 362 ILVDIYGQYGRFRDPEECIAAL 383 (532)
Q Consensus 362 ~li~~~~~~g~~~~a~~~~~~~ 383 (532)
.|...+.+.|+.++|.+.+..+
T Consensus 488 ~Lasl~~~~g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 488 TLASLYQQLGNHEKALETLEQI 509 (895)
T ss_pred hHHHHHHhcCCHHHHHHHHhcc
Confidence 5555555666666666665553
No 35
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=2.7e-11 Score=110.12 Aligned_cols=383 Identities=13% Similarity=0.064 Sum_probs=273.3
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcC--HHHHH
Q 009556 109 HPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRN--QETYE 186 (532)
Q Consensus 109 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~ 186 (532)
..|...+-.....+-+.|....|...|...... -+..|.+.+....-.-+.+.+..+. . +.+.| ...--
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~l~----~-~l~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSILV----V-GLPSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHHHH----h-cCcccchHHHHH
Confidence 445555555555666778888888888777642 2334444443333333333332221 1 12111 11112
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhc
Q 009556 187 ILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGL--SLDRQIYNSIIDTFGK 264 (532)
Q Consensus 187 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~ 264 (532)
.+..++-.....+++.+-.......|++-+...-+....+.....++++|+.+|+++.+... --|..+|..++-.--.
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence 34456666678888888888888888887777777777777889999999999999998732 1256677766533222
Q ss_pred cCCHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 009556 265 YGELV-EALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKK 343 (532)
Q Consensus 265 ~g~~~-~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 343 (532)
+.++. -|..+++- ... -+.|...+.+-|.-.++.++|...|++..+.+. -....++.+..-|....+...|.+
T Consensus 312 ~skLs~LA~~v~~i---dKy--R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 312 KSKLSYLAQNVSNI---DKY--RPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred hHHHHHHHHHHHHh---ccC--CccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHH
Confidence 11111 12222211 112 345677788888899999999999999987642 244667777888999999999999
Q ss_pred HHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCC
Q 009556 344 NFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGI 423 (532)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 423 (532)
.++.+++.+ |.|-..|-.|.++|.-.+...-|+-.|++..... +.|...|.+|...|.+.++.++|.+-|......|
T Consensus 386 sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~- 462 (559)
T KOG1155|consen 386 SYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG- 462 (559)
T ss_pred HHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-
Confidence 999999886 6788999999999999999999999999998764 4588999999999999999999999999998876
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCH
Q 009556 424 EPNLVMLNVLINAFGVAGKYKEALSVYHLMKDI----GISPD--LVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDR 497 (532)
Q Consensus 424 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 497 (532)
..+...+..|...|-+.++.++|...|++..+. |...+ ...-.-|..-+.+.+++++|.........- .+..
T Consensus 463 dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~ 540 (559)
T KOG1155|consen 463 DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETEC 540 (559)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchH
Confidence 456788999999999999999999999887652 33322 222233666778899999999887777653 7777
Q ss_pred HHHHHHHHHHHHHh
Q 009556 498 KARQILQSALVVLE 511 (532)
Q Consensus 498 ~t~~~l~~a~~~~~ 511 (532)
.--..|++.+.+..
T Consensus 541 eeak~LlReir~~~ 554 (559)
T KOG1155|consen 541 EEAKALLREIRKIQ 554 (559)
T ss_pred HHHHHHHHHHHHhc
Confidence 77788888776653
No 36
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.63 E-value=2e-12 Score=124.56 Aligned_cols=290 Identities=12% Similarity=0.072 Sum_probs=143.5
Q ss_pred cCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHH--HHHHHHHcCCChHHHH
Q 009556 160 KGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYG--KVIGLYRDNGMWKKAV 237 (532)
Q Consensus 160 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~ 237 (532)
.|+++.|.+.+....+..-. ....|.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 56777776666655443111 1222333333445666666666666666543 23322221 2234555556666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 009556 238 GIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQG 317 (532)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 317 (532)
+.++++.+.. +-+......+...|.+.|++++|.+++..+.+.+..++. ....+-
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~----------------------- 228 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE----------------------- 228 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH-----------------------
Confidence 6665555543 224445555555555555555555555555554332111 111000
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHH
Q 009556 318 FYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCI 397 (532)
Q Consensus 318 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 397 (532)
...|..++.......+.+...++++.+.+. .+.++.....+...+...|+.++|.+++++..+. +|+... .
T Consensus 229 ----~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~ 299 (398)
T PRK10747 229 ----QQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--V 299 (398)
T ss_pred ----HHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--H
Confidence 001111222222222333334444433222 1334555555666666666666666666655553 233321 1
Q ss_pred HHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 009556 398 LANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKK 477 (532)
Q Consensus 398 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 477 (532)
++.+....++.+++.+..+...+.. +-|...+..+...|.+.+++++|.+.|+.+.+. .|+..++..+...+.+.|+
T Consensus 300 ~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~ 376 (398)
T PRK10747 300 LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHK 376 (398)
T ss_pred HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCC
Confidence 2233334466666666666665542 334445556666666666666666666666653 4666666666666666666
Q ss_pred cChHHHHHHHHH
Q 009556 478 FHKVPEIYKQME 489 (532)
Q Consensus 478 ~~~a~~~~~~m~ 489 (532)
.++|.+++++-.
T Consensus 377 ~~~A~~~~~~~l 388 (398)
T PRK10747 377 PEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHHH
Confidence 666666666554
No 37
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.63 E-value=2.2e-12 Score=125.08 Aligned_cols=294 Identities=11% Similarity=-0.013 Sum_probs=143.3
Q ss_pred hcCChhHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHH
Q 009556 159 KKGLLGLGSRLLMVMEDMGICRN-QETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAV 237 (532)
Q Consensus 159 ~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 237 (532)
..|+++.|.+.+.+..+.. |+ ...+-....++.+.|+.+.|.+.+.+..+....+...........+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 4566666666665555432 22 22333334455555666666666665544321111112222344445555555555
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHC
Q 009556 238 GIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWN-SLIRWHCKAGDVAKALELFTQMQEQ 316 (532)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~ 316 (532)
..++.+.+.. +-+..+...+...+...|++++|.+.+..+.+.+.. +...+. .-..++
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~------------------- 232 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAE------------------- 232 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH-------------------
Confidence 5555555543 223444445555555555555555555555544322 111111 000000
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHH
Q 009556 317 GFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGH---GKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGS 393 (532)
Q Consensus 317 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 393 (532)
......+..+.+.+.+..+.+... +.+...+..+...+...|+.++|.+.+++..+........
T Consensus 233 -------------~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~ 299 (409)
T TIGR00540 233 -------------IGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAI 299 (409)
T ss_pred -------------HHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccc
Confidence 000111111111222222222111 1245555566666666666666666666665543221111
Q ss_pred H-HHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009556 394 M-FCILANAYAQQGLCEQTVKVLQLMEPEGIEPNL--VMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMK 470 (532)
Q Consensus 394 ~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 470 (532)
. ...........++.+.+.+.++...+.. +-|. ....++...+.+.|++++|.+.|+........|+...+..+..
T Consensus 300 ~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ 378 (409)
T TIGR00540 300 SLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAAD 378 (409)
T ss_pred hhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHH
Confidence 1 1111112223356666677776665541 2233 4556777777777888888877775433334577777777777
Q ss_pred HHHhcCCcChHHHHHHHHH
Q 009556 471 AFIRAKKFHKVPEIYKQME 489 (532)
Q Consensus 471 ~~~~~g~~~~a~~~~~~m~ 489 (532)
.+.+.|+.++|.++|++..
T Consensus 379 ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 379 AFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 7777888777777777653
No 38
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=1.4e-10 Score=105.77 Aligned_cols=403 Identities=11% Similarity=0.094 Sum_probs=231.7
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-HhHHHHH
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKL-RFYNILL 154 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~-~~~~~li 154 (532)
+...|-...+.=..++++..|..+|++...-. ..+...|...+..=.++.+...|..++++.... -|.+ ..|-..+
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ 148 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHH
Confidence 33444444444455788888999999988765 566777888888888888888888888888754 2333 3444555
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChH
Q 009556 155 RGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWK 234 (532)
Q Consensus 155 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 234 (532)
.+=-..|++..|.++|++..+ ..|+...|++.|+.=.+.+..+.|..+|++..-. .|+..+|....+.--+.|...
T Consensus 149 ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~ 224 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVA 224 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHH
Confidence 555567888888888887776 4588888888888888888888888888887654 577878777777777788888
Q ss_pred HHHHHHHHHHHc-C-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC------------------------------
Q 009556 235 KAVGIVEEIREM-G-LSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQES------------------------------ 282 (532)
Q Consensus 235 ~a~~~~~~~~~~-~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------------------------------ 282 (532)
.+..+|+...+. | -..+...+++....=.++..++.|.-+|.-..+.-
T Consensus 225 ~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 225 LARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 888877776653 1 01112233333333334445555555554443321
Q ss_pred -------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHH---HccCCHH
Q 009556 283 -------------IRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDP-------KIFITIISCL---GELGKWD 339 (532)
Q Consensus 283 -------------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-------~~~~~ll~~~---~~~~~~~ 339 (532)
-+-|-.+|--.+..-...|+.+...++|++.... ++|-. ..|..+=-++ ....+.+
T Consensus 305 ~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~e 383 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVE 383 (677)
T ss_pred hhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 1123344444444444555555555555555543 23311 1111111111 1234555
Q ss_pred HHHHHHHHHHhcCCCCCHhHHHHHHHHH----HhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009556 340 VIKKNFENMKDRGHGKIGAIYAILVDIY----GQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVL 415 (532)
Q Consensus 340 ~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 415 (532)
.+.++++..++. +|....++.-+--+| .++.++..|.+++...+ |..|-..+|...|..-.+.++++.+.+++
T Consensus 384 rtr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLY 460 (677)
T KOG1915|consen 384 RTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLY 460 (677)
T ss_pred HHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHH
Confidence 555555555542 233333333332222 23445555555555444 33455555555555555666666666666
Q ss_pred HHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCcChHHHHHHHHHh
Q 009556 416 QLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGI-SPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES 490 (532)
Q Consensus 416 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (532)
+...+.+ +-|..+|......=...|+.+.|..+|+..++... ......|.+.|.--...|.++.|..+++++.+
T Consensus 461 Ekfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 461 EKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred HHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence 6666554 33555565555555556666666666666554311 11223444455544556666666666666654
No 39
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.61 E-value=4.5e-12 Score=122.88 Aligned_cols=130 Identities=14% Similarity=0.077 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHH--HHHccCCHHHHHHHHHHHHhcCCCCCH--hHH
Q 009556 286 DIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIF-ITIIS--CLGELGKWDVIKKNFENMKDRGHGKIG--AIY 360 (532)
Q Consensus 286 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 360 (532)
+...+..+...+...|+.++|.+++++..+.. ||.... ..++. .....++.+.+.+.++...+.. +.++ ...
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll 338 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCIN 338 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHH
Confidence 44455555555555555555555555555432 222110 00111 1122344555555555554432 2333 444
Q ss_pred HHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 009556 361 AILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLM 418 (532)
Q Consensus 361 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 418 (532)
.++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.
T Consensus 339 ~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 339 RALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555666666666666666664333333455555556666666666666666666553
No 40
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.61 E-value=7.8e-12 Score=120.51 Aligned_cols=279 Identities=9% Similarity=0.108 Sum_probs=135.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChHh-HHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHH--HHHHHHHHHHhcCChHHH
Q 009556 125 VGRTLEADAIFQEMVCFGFNPKLRF-YNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQE--TYEILLDYHVNAGRLDDT 201 (532)
Q Consensus 125 ~~~~~~A~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~li~~~~~~~~~~~a 201 (532)
.|+++.|.+.+....+.. +++.. |.....+..+.|+++.|.+.+.++.+.. |+.. ........+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHHH
Confidence 477777776666554432 12222 2222334466677777777777776532 3332 222335566677777777
Q ss_pred HHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHhccCCHHHHHHH
Q 009556 202 WLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDR-------QIYNSIIDTFGKYGELVEALEV 274 (532)
Q Consensus 202 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~ 274 (532)
.+.++++.+.... +......+...|.+.|++++|.+++..+.+.+..++. ..|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 7777777665422 5566666677777777777777777777766543221 1222222222233334444444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Q 009556 275 FEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHG 354 (532)
Q Consensus 275 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 354 (532)
++.+.+. .+.+......+...+...|+.++|.+.+++..+. .|+.... ++.+....++.+++.+..+...+.. +
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P 325 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-G 325 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-C
Confidence 4444322 1224444555555555555555555555555542 2233111 1122223344444444444444332 2
Q ss_pred CCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009556 355 KIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQ 416 (532)
Q Consensus 355 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 416 (532)
.|......+...+.+.+++++|.+.|+...+. .|+...+..+...+.+.|+.++|.++++
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~ 385 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRR 385 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33333444444444444444444444444332 2333333344444444444444444443
No 41
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.59 E-value=1.3e-14 Score=133.49 Aligned_cols=261 Identities=15% Similarity=0.142 Sum_probs=100.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhc
Q 009556 82 KSIQYCCKLGDIDEAMALLAQMQALG-FHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKK 160 (532)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 160 (532)
.+...+.+.|++++|++++++..... .+.|...|..+.......++++.|++.++++...+ +.+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 44667778899999999986654433 23445555666666777888999999999888765 3356667777777 688
Q ss_pred CChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCcCHHhHHHHHHHHHcCCChHHHHHH
Q 009556 161 GLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKG-FQLNSFVYGKVIGLYRDNGMWKKAVGI 239 (532)
Q Consensus 161 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~ 239 (532)
+++++|.++++...+.. ++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888887765532 556667778888888888888888888876543 344667777778888888888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 009556 240 VEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFY 319 (532)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 319 (532)
+++..+.. +.|....+.++..+...|+.+++.++++...+.. +.|...|..+..++...|+.++|+.++++..... +
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 88888774 2357778888888888888888777777766542 2344567778888888888888888888877642 3
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 009556 320 PDPKIFITIISCLGELGKWDVIKKNFENMK 349 (532)
Q Consensus 320 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 349 (532)
.|+.+...+..++...|+.++|.++..++.
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp T-HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 467777778888888888888887776654
No 42
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.59 E-value=1e-09 Score=104.11 Aligned_cols=406 Identities=12% Similarity=0.113 Sum_probs=325.1
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHH----HHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--ChH
Q 009556 75 FSGNSYNKSIQYCCKLGDIDEAMALLAQ----MQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNP--KLR 148 (532)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~--~~~ 148 (532)
.+...|-+-...=-++|+.+...++.++ +...|+..+...|..=...|-..|..--+..+....+..|+.. -..
T Consensus 438 td~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~ 517 (913)
T KOG0495|consen 438 TDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKS 517 (913)
T ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHh
Confidence 3556676555555678999988888776 5566888999999999999999999999999999888877654 347
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHH
Q 009556 149 FYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYR 228 (532)
Q Consensus 149 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 228 (532)
||+.-...|.+.+.++-|..+|....+-- +.+...|......=-..|..++...+|++....-. -....|......+-
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p-kae~lwlM~ake~w 595 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP-KAEILWLMYAKEKW 595 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-cchhHHHHHHHHHH
Confidence 88999999999999999999999988753 25667888888877888999999999999988733 25566666677778
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 009556 229 DNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALE 308 (532)
Q Consensus 229 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 308 (532)
..|+...|..++..+.+.... +..+|-+.+........++.|..+|.+.... .|+...|.--+...--.++.++|++
T Consensus 596 ~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred hcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHH
Confidence 889999999999999988644 7888999999999999999999999988764 5677777777777777889999999
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcC
Q 009556 309 LFTQMQEQGFYPD-PKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEG 387 (532)
Q Consensus 309 ~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 387 (532)
++++..+. -|+ ...|..+.+.+-+.++.+.|...|..=.+. ++..+..|-.|.+.-.+.|.+-.|..+++...-++
T Consensus 673 llEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN 749 (913)
T KOG0495|consen 673 LLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN 749 (913)
T ss_pred HHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC
Confidence 99998875 344 456777777888888999988888765544 35667788888888889999999999999988776
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccC----C-------------------------CCCCHHHHHHHHHHHH
Q 009556 388 LQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPE----G-------------------------IEPNLVMLNVLINAFG 438 (532)
Q Consensus 388 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~-------------------------~~p~~~~~~~li~~~~ 438 (532)
+.+...|-..|+.-.+.|+.+.|..+..+..+. | ...|....-.+...+-
T Consensus 750 -Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw 828 (913)
T KOG0495|consen 750 -PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFW 828 (913)
T ss_pred -CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHH
Confidence 457788999999999999999888776654432 1 1234444556667777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHh
Q 009556 439 VAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES 490 (532)
Q Consensus 439 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (532)
...+++.|.+.|.+..+.+. .+-.+|..+...+.+.|.-++-.++++....
T Consensus 829 ~e~k~~kar~Wf~Ravk~d~-d~GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 829 SEKKIEKAREWFERAVKKDP-DNGDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred HHHHHHHHHHHHHHHHccCC-ccchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 78899999999999987642 2455888899999999998888999998876
No 43
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.58 E-value=1.2e-14 Score=133.77 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=6.2
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 009556 293 LIRWHCKAGDVAKALELFTQ 312 (532)
Q Consensus 293 li~~~~~~g~~~~A~~~~~~ 312 (532)
++..+.+.++++++.++++.
T Consensus 116 ~l~~~~~~~~~~~~~~~l~~ 135 (280)
T PF13429_consen 116 ALQLYYRLGDYDEAEELLEK 135 (280)
T ss_dssp --H-HHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHH
Confidence 33333333333333333333
No 44
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=1.7e-09 Score=98.90 Aligned_cols=383 Identities=10% Similarity=0.088 Sum_probs=267.5
Q ss_pred CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHH
Q 009556 74 EFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSS-ISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNI 152 (532)
Q Consensus 74 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ 152 (532)
..+...|-.-+..=.++..+..|..++++.... -|-+ ..|-..+..=-..|+...|.++|++-.+. .|+...|++
T Consensus 104 ~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~s 179 (677)
T KOG1915|consen 104 YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLS 179 (677)
T ss_pred cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHH
Confidence 445667777777777888888888888887765 2332 34555555555668888888888877764 588888888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CC-CcCHHhHHHHHHHHHcC
Q 009556 153 LLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSK-GF-QLNSFVYGKVIGLYRDN 230 (532)
Q Consensus 153 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~-~~~~~~~~~ll~~~~~~ 230 (532)
.|+.=.+...++.|..++++..- +.|++.+|.-....=.+.|....|..+|....+. |- ..+...+.+....-..+
T Consensus 180 fI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~q 257 (677)
T KOG1915|consen 180 FIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQ 257 (677)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888775 3478888877777777788877777777776543 10 00112222222222233
Q ss_pred CChHHHHHHHHHHH--------------------------------------------HcCCCCCHHHHHHHHHHHhccC
Q 009556 231 GMWKKAVGIVEEIR--------------------------------------------EMGLSLDRQIYNSIIDTFGKYG 266 (532)
Q Consensus 231 ~~~~~a~~~~~~~~--------------------------------------------~~~~~~~~~~~~~li~~~~~~g 266 (532)
..++.|.-+|+-.+ +.+ +.|-.+|-..++.-...|
T Consensus 258 kE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g 336 (677)
T KOG1915|consen 258 KEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVG 336 (677)
T ss_pred HHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcC
Confidence 33444443333222 211 335556777777777889
Q ss_pred CHHHHHHHHHHHHhCCCCCCH--HHHHHHHH--------HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----
Q 009556 267 ELVEALEVFEKMQQESIRPDI--VTWNSLIR--------WHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCL---- 332 (532)
Q Consensus 267 ~~~~A~~~~~~m~~~~~~p~~--~~~~~li~--------~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~---- 332 (532)
+.+...++|++.... ++|-. ..|...|- .-....+++.+.++++..++. ++-...||..+=-.|
T Consensus 337 ~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~fe 414 (677)
T KOG1915|consen 337 DKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFE 414 (677)
T ss_pred CHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHH
Confidence 999999999998875 44421 22322222 123467899999999998873 444566766554444
Q ss_pred HccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009556 333 GELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTV 412 (532)
Q Consensus 333 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 412 (532)
.++.++..|.+++...+. ..|-..++...|+.-.+.+.++.+..+++...+-+ +-+..+|......-...|+.+.|.
T Consensus 415 IRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaR 491 (677)
T KOG1915|consen 415 IRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRAR 491 (677)
T ss_pred HHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHH
Confidence 467789999999988764 46788899999999999999999999999999875 446778888888888899999999
Q ss_pred HHHHHhccCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009556 413 KVLQLMEPEG-IEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMK 470 (532)
Q Consensus 413 ~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 470 (532)
.+|....+.. +......|.+.|+-=...|.++.|..+++++.+.. +...+|-+...
T Consensus 492 aifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt--~h~kvWisFA~ 548 (677)
T KOG1915|consen 492 AIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT--QHVKVWISFAK 548 (677)
T ss_pred HHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc--ccchHHHhHHH
Confidence 9999988642 22334567777777788999999999999998763 33445665544
No 45
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=1.4e-10 Score=106.27 Aligned_cols=404 Identities=13% Similarity=0.069 Sum_probs=259.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHhHHHHHHH
Q 009556 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPS-SISYASLIEALASVGRTLEADAIFQEMVCFGFNPK-LRFYNILLRG 156 (532)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~ 156 (532)
.+-+.-+-|.++|++++|++.|.+.++. .|| +.-|.....+|...|++++..+.-...++.+ |+ +-.+.--.++
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A 192 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASA 192 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHH
Confidence 3555667788999999999999999987 577 7888899999999999999999888888754 43 3455555667
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHH--------HHHHH-C--CCCcCHHhHHHHHH
Q 009556 157 FLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLII--------NEMRS-K--GFQLNSFVYGKVIG 225 (532)
Q Consensus 157 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~--------~~m~~-~--~~~~~~~~~~~ll~ 225 (532)
+-..|++++|+.=. |-..++.++-...-.-.+.+++ ++-.+ . .+.|......+...
T Consensus 193 ~E~lg~~~eal~D~-------------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~ 259 (606)
T KOG0547|consen 193 HEQLGKFDEALFDV-------------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFG 259 (606)
T ss_pred HHhhccHHHHHHhh-------------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHh
Confidence 77778877775321 1112222221111111111111 11111 1 12233322222222
Q ss_pred HHHc----------------------------CCChHHHHHHHHHHHHc---CCCCC---------HHHHHHHHHHHhcc
Q 009556 226 LYRD----------------------------NGMWKKAVGIVEEIREM---GLSLD---------RQIYNSIIDTFGKY 265 (532)
Q Consensus 226 ~~~~----------------------------~~~~~~a~~~~~~~~~~---~~~~~---------~~~~~~li~~~~~~ 265 (532)
.+.. ...+..|.+.+.+-... ....+ ..+.......+.-.
T Consensus 260 sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~ 339 (606)
T KOG0547|consen 260 SFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLK 339 (606)
T ss_pred hccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhc
Confidence 2211 01122222222221110 00111 11111112223457
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 009556 266 GELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNF 345 (532)
Q Consensus 266 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 345 (532)
|+.-.|..-|+........++. .|--+...|....+.++.+..|.+....+ +-++.+|..-.+...-++++++|..-|
T Consensus 340 g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred CCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 8888899999888876444332 26677788899999999999999988764 336667777777777788999999999
Q ss_pred HHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCC
Q 009556 346 ENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEP 425 (532)
Q Consensus 346 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 425 (532)
++.++.. +.+...|-.+.-+.-+.+++++++..|++.+++ ++..+..|+.....+..+++++.|.+.|+..++. .|
T Consensus 418 ~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~ 493 (606)
T KOG0547|consen 418 QKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EP 493 (606)
T ss_pred HHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--cc
Confidence 9988776 445666666666677888999999999999876 3456677999999999999999999999988764 23
Q ss_pred C-------HHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCC
Q 009556 426 N-------LVML--NVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPD 496 (532)
Q Consensus 426 ~-------~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~ 496 (532)
+ ...+ -.++..- -.+++..|.+++.+..+.+.+ ....|.+|...-.+.|+.++|+++|++....
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~l----- 566 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQL----- 566 (606)
T ss_pred ccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-----
Confidence 2 2211 1222221 338899999999999886433 3457889999999999999999999987642
Q ss_pred HHHHHHHHHHHHHHhh
Q 009556 497 RKARQILQSALVVLEQ 512 (532)
Q Consensus 497 ~~t~~~l~~a~~~~~~ 512 (532)
..|..-+++++.-.+.
T Consensus 567 Art~~E~~~a~s~aeA 582 (606)
T KOG0547|consen 567 ARTESEMVHAYSLAEA 582 (606)
T ss_pred HHhHHHHHHHHHHHHH
Confidence 2344445555544433
No 46
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.54 E-value=1.1e-10 Score=104.58 Aligned_cols=292 Identities=13% Similarity=0.118 Sum_probs=143.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHH
Q 009556 126 GRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLII 205 (532)
Q Consensus 126 ~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 205 (532)
|++.+|.++..+-.+.+ +.....|..-..+--+.|+.+.+-+.+.+.-+....++...+-+........|+.+.|..-.
T Consensus 98 G~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 98 GDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred CcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 55555555555544443 12223333344444445555555555555554433344444445555555555555555555
Q ss_pred HHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC
Q 009556 206 NEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRP 285 (532)
Q Consensus 206 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 285 (532)
+++.+.+.. +........++|.+.|++.....++..+.+.+.-.+... .+ -
T Consensus 177 ~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~-----------------~~-----------l 227 (400)
T COG3071 177 DQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA-----------------AR-----------L 227 (400)
T ss_pred HHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH-----------------HH-----------H
Confidence 555444322 344444445555555555555555555555443322110 00 0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHH
Q 009556 286 DIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVD 365 (532)
Q Consensus 286 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 365 (532)
...+|+.+++-....+..+.-...|+..... .+-++..-.+++.-+.+.|+.++|.++..+..+++..+. ...+ -
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~-~ 302 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRL-I 302 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHH-H
Confidence 1123444444444444444444444443322 233344444555555555566666555555555544333 1111 1
Q ss_pred HHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHH
Q 009556 366 IYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKE 445 (532)
Q Consensus 366 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 445 (532)
...+-++.+.-++..+.-.+. .+.++..+..|...|.+++.+.+|.+.|+...+. .|+..+|+.+.+++.+.|+..+
T Consensus 303 ~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~ 379 (400)
T COG3071 303 PRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEE 379 (400)
T ss_pred hhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHH
Confidence 122334444444444433322 1223355666677777777777777777765554 5677777777777777777777
Q ss_pred HHHHHHHHHH
Q 009556 446 ALSVYHLMKD 455 (532)
Q Consensus 446 A~~~~~~m~~ 455 (532)
|.++.++...
T Consensus 380 A~~~r~e~L~ 389 (400)
T COG3071 380 AEQVRREALL 389 (400)
T ss_pred HHHHHHHHHH
Confidence 7777666553
No 47
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.54 E-value=1.7e-11 Score=119.69 Aligned_cols=84 Identities=21% Similarity=0.281 Sum_probs=73.5
Q ss_pred CCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHh
Q 009556 70 NSGEEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRF 149 (532)
Q Consensus 70 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~ 149 (532)
..|..|+.++|.++|..||..|+.+.|- +|..|.-+..+.+...++.++.+....++.+.+. .|...+
T Consensus 18 ~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDt 85 (1088)
T KOG4318|consen 18 ISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADT 85 (1088)
T ss_pred HhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhH
Confidence 4578899999999999999999999998 9998888877788888999999988888887776 578889
Q ss_pred HHHHHHHHHhcCChhH
Q 009556 150 YNILLRGFLKKGLLGL 165 (532)
Q Consensus 150 ~~~li~~~~~~g~~~~ 165 (532)
|..|..+|.+.||+..
T Consensus 86 yt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 86 YTNLLKAYRIHGDLIL 101 (1088)
T ss_pred HHHHHHHHHhccchHH
Confidence 9999999999998654
No 48
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.53 E-value=1.7e-10 Score=103.36 Aligned_cols=292 Identities=16% Similarity=0.144 Sum_probs=181.0
Q ss_pred HHHHHHH--HcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHh
Q 009556 82 KSIQYCC--KLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLK 159 (532)
Q Consensus 82 ~li~~~~--~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 159 (532)
.+..+.. -.|+|.+|.++..+-.+.+ ......|..-+.+--..|+.+.+-.++.+..+.--.++...+-+..+....
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~ 165 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN 165 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh
Confidence 3444443 3599999999999987775 233445666667777899999999999999987446777888888899999
Q ss_pred cCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHH-------hHHHHHHHHHcCCC
Q 009556 160 KGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSF-------VYGKVIGLYRDNGM 232 (532)
Q Consensus 160 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-------~~~~ll~~~~~~~~ 232 (532)
.|+.+.|..-.+++.+.+. .+.........+|.+.|++.+...++..|.+.|.--|+. +|..+++-....+.
T Consensus 166 ~~d~~aA~~~v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~ 244 (400)
T COG3071 166 RRDYPAARENVDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG 244 (400)
T ss_pred CCCchhHHHHHHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999998765 677788999999999999999999999999998765543 34444444444444
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009556 233 WKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQ 312 (532)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 312 (532)
.+.-...++..... ...++..-.+++.-+.++|+.++|.++..+..+++..|+. ...-.+.+-++.+.-++..++
T Consensus 245 ~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~ 319 (400)
T COG3071 245 SEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEK 319 (400)
T ss_pred chHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHH
Confidence 44444444444322 1223444444555555555555555555555554443331 111223334444444444444
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHH
Q 009556 313 MQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAAL 383 (532)
Q Consensus 313 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 383 (532)
-... .+-++..+.++...|.+.+.|.+|...|+...+. .|+..+|+.+.+++.+.|+..+|.++.++.
T Consensus 320 ~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 320 WLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred HHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 3322 1222344445555555555555555555544433 244445555555555555555555554443
No 49
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.52 E-value=1.6e-10 Score=100.39 Aligned_cols=268 Identities=15% Similarity=0.089 Sum_probs=150.8
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh------HhHHHHHHHHHhcCCh
Q 009556 90 LGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKL------RFYNILLRGFLKKGLL 163 (532)
Q Consensus 90 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~------~~~~~li~~~~~~g~~ 163 (532)
+++.++|+++|-+|.+.. +.+..+--+|.+.+.+.|..++|+.+++.+.++ ||. ...-.|.+-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 467788888888887653 334445566777777888888888888887763 432 2234455666677777
Q ss_pred hHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHH----hHHHHHHHHHcCCChHHHHHH
Q 009556 164 GLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSF----VYGKVIGLYRDNGMWKKAVGI 239 (532)
Q Consensus 164 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~ 239 (532)
+.|..+|..+.+.+. .-......|+..|-+..++++|+++-+++.+.+..+... -|.-+...+....+.+.|..+
T Consensus 124 DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 777777777765432 334456667777777777777777777776665443221 233333344445566666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 009556 240 VEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFY 319 (532)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 319 (532)
+.+..+.+. ..+..--.+.+.+...|+++.|.+.++...+.+..--..+...|..+|.+.|+.++....+.++.+....
T Consensus 203 l~kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 203 LKKALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHHHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 666665531 1223333444555666666666666666665533323334455566666666666666666666554322
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 009556 320 PDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIY 367 (532)
Q Consensus 320 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 367 (532)
++. -..+-.......-.+.|...+.+-... .|+...+..+++.-
T Consensus 282 ~~~--~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~ 325 (389)
T COG2956 282 ADA--ELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYH 325 (389)
T ss_pred ccH--HHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhh
Confidence 222 222222222333344444444333333 34555555555543
No 50
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=9e-10 Score=100.40 Aligned_cols=350 Identities=13% Similarity=0.124 Sum_probs=232.4
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhH--HHHHHHHHhcCChh
Q 009556 87 CCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFY--NILLRGFLKKGLLG 164 (532)
Q Consensus 87 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~--~~li~~~~~~g~~~ 164 (532)
+.+.|..+.|++.|......- +-.-..|..|...+. +.+ ....... |.+.|.... --+..++-.....+
T Consensus 174 ~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~lit---~~e----~~~~l~~-~l~~~~h~M~~~F~~~a~~el~q~~ 244 (559)
T KOG1155|consen 174 LKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELIT---DIE----ILSILVV-GLPSDMHWMKKFFLKKAYQELHQHE 244 (559)
T ss_pred HHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhhc---hHH----HHHHHHh-cCcccchHHHHHHHHHHHHHHHHHH
Confidence 445677777777777766431 223334443333322 222 2222221 222221111 12345566666788
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--cCHHhHHHHHHHHHcCCChHHHHHHHHH
Q 009556 165 LGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQ--LNSFVYGKVIGLYRDNGMWKKAVGIVEE 242 (532)
Q Consensus 165 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 242 (532)
++.+-.+.....|.+-+...-+....+.....++++|+.+|+++.+..+- -|..+|+.++- .+..+-+.+ .+.+
T Consensus 245 e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~~~~skLs--~LA~ 320 (559)
T KOG1155|consen 245 EALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VKNDKSKLS--YLAQ 320 (559)
T ss_pred HHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HHhhhHHHH--HHHH
Confidence 88888888888887444444444455566778899999999999887321 15667776663 333222211 1111
Q ss_pred -HHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 009556 243 -IREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPD 321 (532)
Q Consensus 243 -~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 321 (532)
..+.+ .--+.|+..+.+-|.-.++.++|...|++..+.+.. ....|+.|.+-|....+...|.+-++...+-. +.|
T Consensus 321 ~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~D 397 (559)
T KOG1155|consen 321 NVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRD 397 (559)
T ss_pred HHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chh
Confidence 11110 112345666777788888999999999998876433 55678888899999999999999999988764 447
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 009556 322 PKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANA 401 (532)
Q Consensus 322 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 401 (532)
-..|-.+.++|.-.+...-|+-.|++..... |.|...|.+|.++|.+.++.++|+..|......+ ..+...+..|...
T Consensus 398 yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakL 475 (559)
T KOG1155|consen 398 YRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKL 475 (559)
T ss_pred HHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHH
Confidence 7888889999999999999999999988765 6788999999999999999999999999988765 3366778899999
Q ss_pred HHhcCCHHHHHHHHHHhcc----CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009556 402 YAQQGLCEQTVKVLQLMEP----EGIEPN--LVMLNVLINAFGVAGKYKEALSVYHLMK 454 (532)
Q Consensus 402 ~~~~g~~~~A~~~~~~m~~----~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 454 (532)
|-+.++.++|...++...+ .|...+ ...---|..-+.+.+++++|........
T Consensus 476 ye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 476 YEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 9999999999988876654 232222 1222235556677788888776554443
No 51
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=1.3e-11 Score=117.33 Aligned_cols=286 Identities=12% Similarity=0.088 Sum_probs=214.2
Q ss_pred ChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhccCCHHHHHHH
Q 009556 197 RLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGL--SLDRQIYNSIIDTFGKYGELVEALEV 274 (532)
Q Consensus 197 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~ 274 (532)
+..+|..+|..+... +.-+..+...+.++|...+++++|.++|+.+.+... .-+..+|...+.-+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 467888889885554 333456777888999999999999999999887531 22566777776544322 12222
Q ss_pred H-HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 009556 275 F-EKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYP-DPKIFITIISCLGELGKWDVIKKNFENMKDRG 352 (532)
Q Consensus 275 ~-~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 352 (532)
+ +.+.+. -+-.+.+|.++.++|.-.++.+.|++.|++..+. .| ...+|+.+..-+.....+|.|...|+..+...
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 2 222222 1236789999999999999999999999998874 44 67888888878888889999999999887653
Q ss_pred CCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHH
Q 009556 353 HGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNV 432 (532)
Q Consensus 353 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 432 (532)
+-+-..|-.+...|.+.++++.|+-.|+...+.+ +-+.+....+...+-+.|+.++|+++++++.... +-|...--.
T Consensus 486 -~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~ 562 (638)
T KOG1126|consen 486 -PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYH 562 (638)
T ss_pred -chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHH
Confidence 2233444557788999999999999999998765 3456677778888899999999999999987664 335554445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCC
Q 009556 433 LINAFGVAGKYKEALSVYHLMKDIGISPD-LVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTP 495 (532)
Q Consensus 433 li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p 495 (532)
.+..+...+++++|+..++++.+. .|+ ...|..+...|.+.|+.+.|+.-|--+.+..-++
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 677778889999999999999885 444 5567788899999999999999988888744333
No 52
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=2e-11 Score=116.06 Aligned_cols=281 Identities=14% Similarity=0.065 Sum_probs=137.4
Q ss_pred CHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CcCHHHHHHHHHHHHhcCChHHHHHH
Q 009556 127 RTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGI--CRNQETYEILLDYHVNAGRLDDTWLI 204 (532)
Q Consensus 127 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~ 204 (532)
+..+|...|..+...- .....+...+.++|...+++++|.++|+.+.+... ..+...|.+.+..+-+.- ++..
T Consensus 334 ~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v----~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV----ALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH----HHHH
Confidence 3445555555533321 22234445555555555555555555555554321 123445555554443211 1111
Q ss_pred H-HHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCC
Q 009556 205 I-NEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESI 283 (532)
Q Consensus 205 ~-~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 283 (532)
+ +.+.+. -+-.+.+|-.+.++|.-+++.+.|++.|++..+.+ +....+|+.+.+-+.....+|.|...|+.....
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~-- 484 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV-- 484 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--
Confidence 1 111111 11244555555555555666666666665555542 114555555555555555566666665555432
Q ss_pred CCCHHHHHH---HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHH
Q 009556 284 RPDIVTWNS---LIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIY 360 (532)
Q Consensus 284 ~p~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 360 (532)
|...||+ +...|.+.++++.|+-.|++..+.+ +.+.+....+...+.+.|+.|+|+++++++...+. .++..-
T Consensus 485 --~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-kn~l~~ 560 (638)
T KOG1126|consen 485 --DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-KNPLCK 560 (638)
T ss_pred --CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-CCchhH
Confidence 3333332 3444555666666666665555432 12344444555555556666666666666555442 222222
Q ss_pred HHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccC
Q 009556 361 AILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPE 421 (532)
Q Consensus 361 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 421 (532)
-..+..+...+++++|+..++++++. ++-+...+..+...|.+.|+.+.|+.-|.-+.+.
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 23334444556666666666666553 1223444555556666666666666665555544
No 53
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.43 E-value=1.5e-09 Score=95.58 Aligned_cols=397 Identities=12% Similarity=0.062 Sum_probs=211.4
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHH
Q 009556 88 CKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGS 167 (532)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 167 (532)
.+.|++++|+..|..+.... .++...+-.+.....-.|.+.+|..+-.... .++-.-..+...-.+.|+-++-.
T Consensus 68 fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~ 141 (557)
T KOG3785|consen 68 FHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRIL 141 (557)
T ss_pred HhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHH
Confidence 34445555554444444332 2333334444444444444444444433321 11222223333333444444444
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHH-HHHHcCCChHHHHHHHHHHHHc
Q 009556 168 RLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVI-GLYRDNGMWKKAVGIVEEIREM 246 (532)
Q Consensus 168 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~ 246 (532)
.+.+.+.+ ....-.+|.......-.+++|++++.+.... .|+-...+.-+ -+|.+..-++-+.++++-..+.
T Consensus 142 ~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 142 TFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred HHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 33333332 1122234444444445678888888888765 23334444333 3566777788888887776665
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh--------------CC------------CCC-----CHHHHHHHHH
Q 009556 247 GLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQ--------------ES------------IRP-----DIVTWNSLIR 295 (532)
Q Consensus 247 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------------~~------------~~p-----~~~~~~~li~ 295 (532)
++.+....|.......+.-.-..|.+-...+.+ .+ +-| -+..--.++-
T Consensus 215 -~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~i 293 (557)
T KOG3785|consen 215 -FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLII 293 (557)
T ss_pred -CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhhee
Confidence 233444445444333222111111111111111 10 001 0112223455
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-----HHccCCHHHHHHHHHHHHhcCCCCCHhH-HHHHHHHHHh
Q 009556 296 WHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISC-----LGELGKWDVIKKNFENMKDRGHGKIGAI-YAILVDIYGQ 369 (532)
Q Consensus 296 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~ 369 (532)
-|.+.+++.+|..+.+++.- ..|-......+..+ .........|.+.|...-+.+..-|... -..+..++.-
T Consensus 294 YyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL 371 (557)
T KOG3785|consen 294 YYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFL 371 (557)
T ss_pred eecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHH
Confidence 67788899999888877642 23333333333222 1222235566677766655554444322 2345555556
Q ss_pred cCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHH-HHHHHHHHhcCCHHHHHH
Q 009556 370 YGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVML-NVLINAFGVAGKYKEALS 448 (532)
Q Consensus 370 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~ 448 (532)
..++++.+..+..+..--...|...+ .+..+++..|++.+|+++|-......++ |..+| ..|.++|.++++++-|++
T Consensus 372 ~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~ 449 (557)
T KOG3785|consen 372 SFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWD 449 (557)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHH
Confidence 66788888888888776555455444 4778899999999999999888765544 44455 456688999999999998
Q ss_pred HHHHHHHCCCCCCHH-HHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 009556 449 VYHLMKDIGISPDLV-TYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSAL 507 (532)
Q Consensus 449 ~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~a~ 507 (532)
++-++.. +.+.. ....+...|.+.+.+--|.+.|+.+.. +.|+...|+-=-.||
T Consensus 450 ~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnWeGKRGAC 504 (557)
T KOG3785|consen 450 MMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENWEGKRGAC 504 (557)
T ss_pred HHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCccccCCccchH
Confidence 7655432 22333 334456778888888888888888876 445554444333333
No 54
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=2.3e-09 Score=100.27 Aligned_cols=289 Identities=12% Similarity=0.048 Sum_probs=224.7
Q ss_pred CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 009556 178 ICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNS 257 (532)
Q Consensus 178 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 257 (532)
...+......-.+-+...+++.+..++.+.+.+.. ++....+..-|.++...|+..+-..+=..+++.- +....+|-+
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~a 317 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFA 317 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhh
Confidence 44566677777788888999999999999988763 3455556666668888888888777777777763 456788999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 009556 258 IIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGK 337 (532)
Q Consensus 258 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 337 (532)
+.--|.-.|+..+|.+.|.+...-... =...|-.....|+-.|..+.|+..+...-+. ++-...-+.-+.--|.+.++
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n 395 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNN 395 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhcc
Confidence 998898899999999999987654222 2356888899999999999999988876653 11112222334456788899
Q ss_pred HHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHc------CCCCCHHHHHHHHHHHHhcCCHHHH
Q 009556 338 WDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLE------GLQPSGSMFCILANAYAQQGLCEQT 411 (532)
Q Consensus 338 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~li~~~~~~g~~~~A 411 (532)
.+.|.+.|.+..... |.|+.+.+.+.-.....+.+.+|..+|+..... ....+..+++.|..+|.+.+.+++|
T Consensus 396 ~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 396 LKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 999999999988765 678888888888888889999999999887521 1112566788999999999999999
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009556 412 VKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIR 474 (532)
Q Consensus 412 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 474 (532)
+..+++..... +-|..++.++.-.|...|+++.|.+.|.+..- +.||-.+-..++..+..
T Consensus 475 I~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 475 IDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHH
Confidence 99999988764 66888999999999999999999999998875 57888777777765543
No 55
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.41 E-value=3.4e-10 Score=110.85 Aligned_cols=273 Identities=18% Similarity=0.143 Sum_probs=158.4
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 009556 98 ALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMG 177 (532)
Q Consensus 98 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 177 (532)
.++-.+...|+.||.+||..+|..||..|+.+.|- +|..|.-...+.+...++.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 34567788899999999999999999999999888 9999988777788899999999999999887776
Q ss_pred CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHH-HcCCCCCHHHHH
Q 009556 178 ICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIR-EMGLSLDRQIYN 256 (532)
Q Consensus 178 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~ 256 (532)
.|...||..|..+|...||... |+...+ -...+...+...|.-..-..++..+. ..+..||..
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~--- 143 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE--- 143 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---
Confidence 3888899999999999998765 222211 11112223333333333333332211 111222222
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 009556 257 SIIDTFGKYGELVEALEVFEKMQQESI-RPDIVTWNSLIRWHCKAG-DVAKALELFTQMQEQGFYPDPKIFITIISCLGE 334 (532)
Q Consensus 257 ~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 334 (532)
..+....-.|-++.+++++..+.-... .|..+ .++-+.... .+++-........+ .|++.+|..++..-..
T Consensus 144 n~illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~ala 216 (1088)
T KOG4318|consen 144 NAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALA 216 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHh
Confidence 122233334445555555544432211 01111 122222221 22222222222222 3566666666666666
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 009556 335 LGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGL 407 (532)
Q Consensus 335 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 407 (532)
.|+.+.|..++..|.+.|.+.+..-+-.|+-+ .++...++.+++-|...|+.|+..|+...+-.+..+|.
T Consensus 217 ag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 217 AGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 66666666666666666666555544444333 55555666666666666666666666555555555433
No 56
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.39 E-value=4.7e-10 Score=100.52 Aligned_cols=199 Identities=13% Similarity=0.061 Sum_probs=128.2
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHH
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (532)
....+..+...+...|++++|++.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 35667778888888999999999999887764 4456777888888888888888888888888765 345566777777
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCC-cCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChH
Q 009556 156 GFLKKGLLGLGSRLLMVMEDMGIC-RNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWK 234 (532)
Q Consensus 156 ~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 234 (532)
.+...|++++|.+.+++....... .....+..+...+...|++++|...+++..+.... +...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHH
Confidence 788888888888888877654211 22334555556666666666666666666554211 3344555555555556666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 009556 235 KAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKM 278 (532)
Q Consensus 235 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 278 (532)
+|...+++..+. .+.+...+..+...+...|+.++|..+.+.+
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 555555555544 1223444444445555555555555554444
No 57
>PRK12370 invasion protein regulator; Provisional
Probab=99.39 E-value=4.4e-10 Score=113.28 Aligned_cols=268 Identities=9% Similarity=-0.032 Sum_probs=183.7
Q ss_pred CCCHhHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHh---------cCChhHHHHHHHHHH
Q 009556 109 HPSSISYASLIEALAS-----VGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLK---------KGLLGLGSRLLMVME 174 (532)
Q Consensus 109 ~~~~~~~~~li~~~~~-----~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~ 174 (532)
..+...|...+++... .+.+++|.++|++..+.. +.+...|..+..++.. .+++++|...+++..
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 4566666666655322 356889999999998764 3345566666655442 345789999999998
Q ss_pred HcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHH
Q 009556 175 DMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQI 254 (532)
Q Consensus 175 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 254 (532)
+... .+...+..+...+...|++++|...|++..+.+.. +...+..+...+...|++++|...+++..+.+.. +...
T Consensus 332 ~ldP-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~ 408 (553)
T PRK12370 332 ELDH-NNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA 408 (553)
T ss_pred hcCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence 8654 46778888888889999999999999999887432 5667888888999999999999999999887533 2333
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHH
Q 009556 255 YNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKI-FITIISCLG 333 (532)
Q Consensus 255 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~ll~~~~ 333 (532)
+..++..+...|++++|...+++..+...+-+...+..+...+...|++++|.+.+.++... .|+... ...+...+.
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHh
Confidence 33444456668899999999998876532224555677788888999999999999887654 344333 344445566
Q ss_pred ccCCHHHHHHHHHHHHhcCC-CCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcC
Q 009556 334 ELGKWDVIKKNFENMKDRGH-GKIGAIYAILVDIYGQYGRFRDPEECIAALKLEG 387 (532)
Q Consensus 334 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 387 (532)
..| +.+...++.+.+... .+....+ +-..|.-.|+.+.+..+ +++.+.+
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 666 477776666654321 1111122 34445556666666655 7776654
No 58
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.37 E-value=2.6e-07 Score=88.10 Aligned_cols=127 Identities=12% Similarity=0.061 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCChHhHHH
Q 009556 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFG------FNPKLRFYNI 152 (532)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g------~~~~~~~~~~ 152 (532)
.|.-.+...-..+-++-++.++++..+ .++..-+-.|..+++.+++++|.+.+....... .+.+...|.-
T Consensus 140 IW~lyl~Fv~~~~lPets~rvyrRYLk----~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~e 215 (835)
T KOG2047|consen 140 IWDLYLKFVESHGLPETSIRVYRRYLK----VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLE 215 (835)
T ss_pred chHHHHHHHHhCCChHHHHHHHHHHHh----cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHH
Confidence 455566666666666667777766663 344445666677777777777777666655221 1233444444
Q ss_pred HHHHHHhcCChhHH---HHHHHHHHHcCCCcCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 009556 153 LLRGFLKKGLLGLG---SRLLMVMEDMGICRNQ--ETYEILLDYHVNAGRLDDTWLIINEMRSK 211 (532)
Q Consensus 153 li~~~~~~g~~~~A---~~~~~~m~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 211 (532)
+-...++.-+.-.. ..+++.+... -+|. ..|.+|.+.|.+.|.+++|.++|++..+.
T Consensus 216 lcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~ 277 (835)
T KOG2047|consen 216 LCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT 277 (835)
T ss_pred HHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 44444443332221 2222222221 1332 35778888888888888888888776654
No 59
>PF13041 PPR_2: PPR repeat family
Probab=99.37 E-value=1.7e-12 Score=83.80 Aligned_cols=50 Identities=34% Similarity=0.562 Sum_probs=41.2
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh
Q 009556 75 FSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALAS 124 (532)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 124 (532)
||+++||++|++|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67788888888888888888888888888888888888888888888764
No 60
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.37 E-value=1e-09 Score=98.32 Aligned_cols=200 Identities=13% Similarity=0.047 Sum_probs=132.3
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 009556 112 SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDY 191 (532)
Q Consensus 112 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 191 (532)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+... .+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence 4566777788888888888888888887654 34566777777888888888888888887776543 345567777777
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCc-CHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 009556 192 HVNAGRLDDTWLIINEMRSKGFQL-NSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVE 270 (532)
Q Consensus 192 ~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 270 (532)
+...|++++|.+.+++.......+ ....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 778888888888888776542222 23445555666667777777777777666553 2234556666666666667777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009556 271 ALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQE 315 (532)
Q Consensus 271 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 315 (532)
|...+++..+. .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 76666666554 223445555555666666666666666655543
No 61
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=3.5e-08 Score=92.57 Aligned_cols=415 Identities=12% Similarity=0.029 Sum_probs=271.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHH----HHHCC---------CCCCh
Q 009556 81 NKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQE----MVCFG---------FNPKL 147 (532)
Q Consensus 81 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~----~~~~g---------~~~~~ 147 (532)
--+.+.+.-.|++++|..+...-.-. ..|..+.......+.+..++++|..++.. ..... +.+|.
T Consensus 53 ~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~ 130 (611)
T KOG1173|consen 53 YWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNS 130 (611)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCc
Confidence 34777778888888888877664333 45777777777888888888888888872 21100 00111
Q ss_pred Hh----HHHHH-------HHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHH---HHHHHhc-----------------C
Q 009556 148 RF----YNILL-------RGFLKKGLLGLGSRLLMVMEDMGICRNQETYEIL---LDYHVNA-----------------G 196 (532)
Q Consensus 148 ~~----~~~li-------~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l---i~~~~~~-----------------~ 196 (532)
.- -+.-. ..|......++|...|.+.... |...+..+ +....-. +
T Consensus 131 ~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~----D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ 206 (611)
T KOG1173|consen 131 AGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA----DAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTK 206 (611)
T ss_pred ccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc----chhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhh
Confidence 10 01111 2233344566777777776653 33333322 2211110 0
Q ss_pred C-hHHHHHHHHH----HHH------------CCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009556 197 R-LDDTWLIINE----MRS------------KGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSII 259 (532)
Q Consensus 197 ~-~~~a~~~~~~----m~~------------~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 259 (532)
. .+.-..+|+- +.. .+..-+......-..-+....++.+..++.+.+.+.. ++....+..-|
T Consensus 207 ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~i 285 (611)
T KOG1173|consen 207 EDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHI 285 (611)
T ss_pred hHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHH
Confidence 0 1111111211 000 0122233334444455667788888888888887764 45555666667
Q ss_pred HHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 009556 260 DTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWD 339 (532)
Q Consensus 260 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 339 (532)
..+...|+..+-..+=.++.+.- +....+|-++.--|...|+.++|.+.|.+....... =...|..+..+++-.+..|
T Consensus 286 a~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~Ehd 363 (611)
T KOG1173|consen 286 ACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHD 363 (611)
T ss_pred HHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHH
Confidence 78888888777777777777652 335678888888888889999999999887643211 1345667778888888888
Q ss_pred HHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 009556 340 VIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLME 419 (532)
Q Consensus 340 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 419 (532)
+|...+..+.+.-... ..-+-.+.--|.+.+..+-|.+.|.+..... +.|+...+-+.-.....+.+.+|..+|+...
T Consensus 364 QAmaaY~tAarl~~G~-hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l 441 (611)
T KOG1173|consen 364 QAMAAYFTAARLMPGC-HLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKAL 441 (611)
T ss_pred HHHHHHHHHHHhccCC-cchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHH
Confidence 8888887776542111 1112234445677888899999998887653 4467777777777777889999999998765
Q ss_pred cC--CCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCC
Q 009556 420 PE--GIE----PNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGC 493 (532)
Q Consensus 420 ~~--~~~----p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 493 (532)
.. .+. .-..+++.|..+|.+.+.+++|+..+++..... +.|..++.++.-.|...|+++.|.+.|.+... +
T Consensus 442 ~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l 518 (611)
T KOG1173|consen 442 EVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--L 518 (611)
T ss_pred HHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--c
Confidence 21 011 133467889999999999999999999998763 45888999999999999999999999999885 8
Q ss_pred CCCHHHHHHHHHHHHH
Q 009556 494 TPDRKARQILQSALVV 509 (532)
Q Consensus 494 ~p~~~t~~~l~~a~~~ 509 (532)
.||..+.+.+++.++.
T Consensus 519 ~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 519 KPDNIFISELLKLAIE 534 (611)
T ss_pred CCccHHHHHHHHHHHH
Confidence 9999888877775554
No 62
>PF13041 PPR_2: PPR repeat family
Probab=99.34 E-value=3.3e-12 Score=82.43 Aligned_cols=50 Identities=40% Similarity=0.731 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009556 425 PNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIR 474 (532)
Q Consensus 425 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 474 (532)
||..+||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 66777777777777777777777777777777777777777777776653
No 63
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.34 E-value=1.1e-07 Score=90.62 Aligned_cols=391 Identities=17% Similarity=0.182 Sum_probs=259.2
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHH
Q 009556 88 CKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGS 167 (532)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 167 (532)
...|+-++|........+.+ ..+.+.|..+.-.+....++++|+..|......+ +.|...+.-+.-.-++.|+++...
T Consensus 52 ~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~ 129 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYL 129 (700)
T ss_pred hcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHH
Confidence 45689999999888877654 4567788888888888899999999999999877 667888888777778888888877
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCcCHHhHHHHH------HHHHcCCChHHHHHHH
Q 009556 168 RLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKG-FQLNSFVYGKVI------GLYRDNGMWKKAVGIV 240 (532)
Q Consensus 168 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll------~~~~~~~~~~~a~~~~ 240 (532)
..-....+..+ .....|..+.-++.-.|+...|..+++...+.. -.|+...+.... ....+.|..++|.+.+
T Consensus 130 ~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L 208 (700)
T KOG1156|consen 130 ETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHL 208 (700)
T ss_pred HHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 77666666432 456688888999999999999999999987664 245555554333 2445678888888777
Q ss_pred HHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HcCCHHHHH-HHHHHHHHCC
Q 009556 241 EEIREMGLSLDRQ-IYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHC-KAGDVAKAL-ELFTQMQEQG 317 (532)
Q Consensus 241 ~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~A~-~~~~~m~~~~ 317 (532)
..-... ..|.. .-..-...+.+.+++++|..++..+... .||..-|...+..+. +-.+.-+++ .+|....+.
T Consensus 209 ~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~- 283 (700)
T KOG1156|consen 209 LDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK- 283 (700)
T ss_pred HhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-
Confidence 655433 11222 2233456678899999999999999886 466666665554443 344444444 556555443
Q ss_pred CCCCHHH-HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHH----c------
Q 009556 318 FYPDPKI-FITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKL----E------ 386 (532)
Q Consensus 318 ~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~------ 386 (532)
.|.... ...=+.......-.+...+++....+.|+++ ++..+...|-.-...+-.+++.-.+.. .
T Consensus 284 -y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~ 359 (700)
T KOG1156|consen 284 -YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFL 359 (700)
T ss_pred -CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcc
Confidence 121111 1111122222333445556667777777654 333333333322211111111111111 0
Q ss_pred ----CCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHhccCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 009556 387 ----GLQPSGSMFC--ILANAYAQQGLCEQTVKVLQLMEPEGIEPNL-VMLNVLINAFGVAGKYKEALSVYHLMKDIGIS 459 (532)
Q Consensus 387 ----~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 459 (532)
.-+|....|. .++..+-+.|+++.|...++....+ .|+. ..|..=.+.+...|++++|..++++.++.+ .
T Consensus 360 D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~ 436 (700)
T KOG1156|consen 360 DDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-T 436 (700)
T ss_pred cccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-c
Confidence 0145555554 4677888999999999999999876 5554 456666688999999999999999998864 3
Q ss_pred CCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCC
Q 009556 460 PDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGC 493 (532)
Q Consensus 460 p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 493 (532)
||...=..-..-..++++.++|.++.....+.|.
T Consensus 437 aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 437 ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred hhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 4655444666677788999999999988887775
No 64
>PRK12370 invasion protein regulator; Provisional
Probab=99.34 E-value=1.3e-09 Score=110.04 Aligned_cols=250 Identities=12% Similarity=0.018 Sum_probs=161.3
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh---------ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 009556 232 MWKKAVGIVEEIREMGLSLDRQIYNSIIDTFG---------KYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGD 302 (532)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 302 (532)
.+++|.+.|++..+... .+...|..+..++. ..+++++|...+++..+.... +...+..+...+...|+
T Consensus 276 ~~~~A~~~~~~Al~ldP-~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMSP-NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccC
Confidence 45778888888877642 23445555544433 234578888888888776432 66677777777888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHH
Q 009556 303 VAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAA 382 (532)
Q Consensus 303 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 382 (532)
+++|...+++..+.+ +.+...+..+...+...|++++|...+++..+.+.. +...+..++..+...|++++|...+++
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 888888888888764 234566777777888888888888888888877533 333333344456667888888888888
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC
Q 009556 383 LKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPN-LVMLNVLINAFGVAGKYKEALSVYHLMKDI-GISP 460 (532)
Q Consensus 383 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p 460 (532)
+.....+-+...+..+...+...|+.++|...+.++... .|+ ....+.+...|...| ++|...++.+.+. .-.+
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 776542334455667777788888888888888887654 333 334455555666666 4777766666542 1112
Q ss_pred CHHHHHHHHHHHHhcCCcChHHHHHHHHHhCC
Q 009556 461 DLVTYSTLMKAFIRAKKFHKVPEIYKQMESSG 492 (532)
Q Consensus 461 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 492 (532)
....+ +-..+.-.|+.+.+..+ +++.+.|
T Consensus 508 ~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 508 NNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 22222 33344445665555555 7776543
No 65
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=3.7e-08 Score=90.72 Aligned_cols=384 Identities=11% Similarity=0.074 Sum_probs=244.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcC-HHHHHHHHHHH
Q 009556 115 YASLIEALASVGRTLEADAIFQEMVCFGFNPK-LRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRN-QETYEILLDYH 192 (532)
Q Consensus 115 ~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~ 192 (532)
+....+-|.++|.+++|++.|.+.++. .|| +..|.....+|...|+|++..+--....+.+ |+ +..+.--..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHH
Confidence 334566778999999999999999986 477 8889999999999999999998887777743 43 34666667788
Q ss_pred HhcCChHHHHHHHHHH-HHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHH-cC--CCCCHHHHHHHHHHHh-----
Q 009556 193 VNAGRLDDTWLIINEM-RSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIRE-MG--LSLDRQIYNSIIDTFG----- 263 (532)
Q Consensus 193 ~~~~~~~~a~~~~~~m-~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~--~~~~~~~~~~li~~~~----- 263 (532)
-..|++++|+.-..-. +-.|+. |..+--.+=+.+- ..|..-.++-.+ .+ +-|+....++....+.
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lk-----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~ 267 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQ-NASIEPMAERVLK-----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKP 267 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcc-cchhHHHHHHHHH-----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccc
Confidence 8888888876433222 111221 1111111111111 111222222222 11 2233333222222211
Q ss_pred ----cc----------------C---CHHHHHHHHHHHHhC-CCCC--C---------HHHHHHHHHHHHHcCCHHHHHH
Q 009556 264 ----KY----------------G---ELVEALEVFEKMQQE-SIRP--D---------IVTWNSLIRWHCKAGDVAKALE 308 (532)
Q Consensus 264 ----~~----------------g---~~~~A~~~~~~m~~~-~~~p--~---------~~~~~~li~~~~~~g~~~~A~~ 308 (532)
+. + .+..|.+.+.+-... ...+ + ..+...-..-+.-.|+.-.|.+
T Consensus 268 ~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~ 347 (606)
T KOG0547|consen 268 LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQE 347 (606)
T ss_pred cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhh
Confidence 00 0 122222222221110 0001 1 1111111112344678889999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCC
Q 009556 309 LFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGL 388 (532)
Q Consensus 309 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 388 (532)
-|+..+.....++. .|..+...|....+.++..+.|+...+.+ +.++.+|..-.+++.-.+++++|..-|++.+..+
T Consensus 348 d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~- 424 (606)
T KOG0547|consen 348 DFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD- 424 (606)
T ss_pred hHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-
Confidence 99998876544332 37777778999999999999999999887 5677888888888888999999999999988764
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CCHH
Q 009556 389 QPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGIS-----PDLV 463 (532)
Q Consensus 389 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----p~~~ 463 (532)
+-+...|-.+.-+..+.+.++++...|++..+. ++.....|+.....+..+++++.|.+.|+..++.... .+..
T Consensus 425 pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~ 503 (606)
T KOG0547|consen 425 PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAA 503 (606)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccch
Confidence 234556666677777889999999999999876 4667789999999999999999999999999864211 1222
Q ss_pred --HHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHHhhhhh
Q 009556 464 --TYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDR-KARQILQSALVVLEQRRC 515 (532)
Q Consensus 464 --~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~l~~a~~~~~~~~~ 515 (532)
.-..++..- -.+++..|.+++++..+ +.|.. ..+..|....+..++.+.
T Consensus 504 plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~e 555 (606)
T KOG0547|consen 504 PLVHKALLVLQ-WKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDE 555 (606)
T ss_pred hhhhhhHhhhc-hhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHH
Confidence 222222222 23889999999999987 55543 356666666655555444
No 66
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.30 E-value=6e-07 Score=85.68 Aligned_cols=408 Identities=14% Similarity=0.219 Sum_probs=259.1
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHH
Q 009556 78 NSYNKSIQYCCKLGDIDEAMALLAQMQAL-GFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (532)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (532)
..|-.-+..+.++|++......|++.... -+......|...+.-....+-++-+..+|++.++ .++..-+-.|..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk----~~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK----VAPEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh----cCHHHHHHHHHH
Confidence 45777788888999999999999987654 2333456788888888889999999999999886 344446777888
Q ss_pred HHhcCChhHHHHHHHHHHHc------CCCcCHHHHHHHHHHHHhcCChHHHH---HHHHHHHHCCCCcC--HHhHHHHHH
Q 009556 157 FLKKGLLGLGSRLLMVMEDM------GICRNQETYEILLDYHVNAGRLDDTW---LIINEMRSKGFQLN--SFVYGKVIG 225 (532)
Q Consensus 157 ~~~~g~~~~A~~~~~~m~~~------~~~~~~~~~~~li~~~~~~~~~~~a~---~~~~~m~~~~~~~~--~~~~~~ll~ 225 (532)
+++.+++++|.+.+...... ..+.+-..|..+-+..+++.+.-..+ .+++.+... -+| ...|.+|..
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLAD 256 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHH
Confidence 89999999999988887643 22345567777777777665543332 333333322 234 356889999
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----------------cC------CHHHHHHHHHHHHhCC-
Q 009556 226 LYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGK----------------YG------ELVEALEVFEKMQQES- 282 (532)
Q Consensus 226 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----------------~g------~~~~A~~~~~~m~~~~- 282 (532)
-|.+.|.+++|.++|++.... .....-|..+.+.|+. .+ +++-.+.-|+.+...+
T Consensus 257 YYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~ 334 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRP 334 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccc
Confidence 999999999999999998765 2233334444444432 11 2333344455444331
Q ss_pred ----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHccCCHHHHHHHHH
Q 009556 283 ----------IRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYP------DPKIFITIISCLGELGKWDVIKKNFE 346 (532)
Q Consensus 283 ----------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~------~~~~~~~ll~~~~~~~~~~~a~~~~~ 346 (532)
-+.++..|..-+. ...|+..+-...+.+.... +.| -...+..+...|-..|+++.|..+|+
T Consensus 335 ~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvife 411 (835)
T KOG2047|consen 335 LLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFE 411 (835)
T ss_pred hHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHH
Confidence 1123334433333 2346677777777777653 223 23457778888889999999999999
Q ss_pred HHHhcCCCCC---HhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCC----------C-------CHHHHHHHHHHHHhcC
Q 009556 347 NMKDRGHGKI---GAIYAILVDIYGQYGRFRDPEECIAALKLEGLQ----------P-------SGSMFCILANAYAQQG 406 (532)
Q Consensus 347 ~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----------~-------~~~~~~~li~~~~~~g 406 (532)
+..+...+.- ..+|..-.++-.+..+++.|.++.+......-. | +...|...++.--..|
T Consensus 412 ka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~g 491 (835)
T KOG2047|consen 412 KATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLG 491 (835)
T ss_pred HhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhc
Confidence 8877654332 445666666666777888888887766432111 1 2345666666666677
Q ss_pred CHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHh---cCCcChHH
Q 009556 407 LCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLV-TYSTLMKAFIR---AKKFHKVP 482 (532)
Q Consensus 407 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~---~g~~~~a~ 482 (532)
-++....+++.+.+..+.......| ....+-.+.-++++.+++++-+..=..|++. .|+..+..+.+ .-+.+.|.
T Consensus 492 tfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraR 570 (835)
T KOG2047|consen 492 TFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERAR 570 (835)
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 7888888888877665432222211 2223344555677777776655443334443 56666555543 23467788
Q ss_pred HHHHHHHhCCCCCCHH
Q 009556 483 EIYKQMESSGCTPDRK 498 (532)
Q Consensus 483 ~~~~~m~~~g~~p~~~ 498 (532)
.+|++..+ |++|+..
T Consensus 571 dLFEqaL~-~Cpp~~a 585 (835)
T KOG2047|consen 571 DLFEQALD-GCPPEHA 585 (835)
T ss_pred HHHHHHHh-cCCHHHH
Confidence 88888877 6666543
No 67
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.28 E-value=2.5e-07 Score=81.94 Aligned_cols=412 Identities=10% Similarity=0.040 Sum_probs=248.5
Q ss_pred CCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHH
Q 009556 72 GEEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYN 151 (532)
Q Consensus 72 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~ 151 (532)
...++...|-.|...+.-.|.+.+|..+-....+ ++-.-..+...-.+.++-++-..+.+.+.+. ..---
T Consensus 86 ~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqL 155 (557)
T KOG3785|consen 86 KDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQL 155 (557)
T ss_pred cCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHH
Confidence 3456667777777777777888888877665432 3333444555566778877777777766532 23334
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHH-HHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHc-
Q 009556 152 ILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLD-YHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRD- 229 (532)
Q Consensus 152 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~-~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~- 229 (532)
+|.....-.-.+.+|++++.++...+ |+-...|..+. .|.+..-++-+.++++-..+. ++-+....+.......+
T Consensus 156 SLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl 232 (557)
T KOG3785|consen 156 SLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRL 232 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhh
Confidence 45555555567899999999998753 45555555544 566777888888888887765 22234444544433332
Q ss_pred -CCChHHHH--H----------HHHHHHHcCC------------CCC-----HHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 009556 230 -NGMWKKAV--G----------IVEEIREMGL------------SLD-----RQIYNSIIDTFGKYGELVEALEVFEKMQ 279 (532)
Q Consensus 230 -~~~~~~a~--~----------~~~~~~~~~~------------~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~ 279 (532)
.|+..+.+ + ..+.+.+.++ -|. +..--.|+-.|.+.+++.+|..+.+++.
T Consensus 233 ~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~ 312 (557)
T KOG3785|consen 233 INGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLD 312 (557)
T ss_pred hccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcC
Confidence 22221111 1 1111222110 010 1112234445788999999999887764
Q ss_pred hCCCCCCHHHHHHHHHH--HHHcCC-------HHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHH
Q 009556 280 QESIRPDIVTWNSLIRW--HCKAGD-------VAKALELFTQMQEQGFYPDPK-IFITIISCLGELGKWDVIKKNFENMK 349 (532)
Q Consensus 280 ~~~~~p~~~~~~~li~~--~~~~g~-------~~~A~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~ 349 (532)
-. ++. .-++.+ ++..|+ ..-|.+.|+-.-+++..-|.. --.++.+.+.-..++++..-+++.+.
T Consensus 313 Pt----tP~--EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~ 386 (557)
T KOG3785|consen 313 PT----TPY--EYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIE 386 (557)
T ss_pred CC----ChH--HHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 222 223332 233332 445556665544444333321 22344555555667889888888877
Q ss_pred hcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHH
Q 009556 350 DRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVM 429 (532)
Q Consensus 350 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 429 (532)
.--...|...+ .+.++++..|.+.+|+++|-.+....++.+..-...|.+.|.+++.++.|++++-.+.. +.+..+
T Consensus 387 sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fs 462 (557)
T KOG3785|consen 387 SYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFS 462 (557)
T ss_pred HHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHH
Confidence 65444444444 57889999999999999999887665544444345566888999999999998877653 224444
Q ss_pred HH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 009556 430 LN-VLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTP-DRKARQILQSAL 507 (532)
Q Consensus 430 ~~-~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~l~~a~ 507 (532)
.- .+..-|.+++.+--|-+.|+.+... .|++..|. |+-....-+|..+....-.| ...+.+-++..+
T Consensus 463 LLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnWe---------GKRGACaG~f~~l~~~~~~~~p~~~~rEVvhll 531 (557)
T KOG3785|consen 463 LLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENWE---------GKRGACAGLFRQLANHKTDPIPISQMREVVHLL 531 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCccccC---------CccchHHHHHHHHHcCCCCCCchhHHHHHHHHH
Confidence 43 3446788999999999999988764 56776663 44444555666665443333 234555566666
Q ss_pred HHHhhhhhcc
Q 009556 508 VVLEQRRCKQ 517 (532)
Q Consensus 508 ~~~~~~~~~~ 517 (532)
...+..+|..
T Consensus 532 r~~~nsq~E~ 541 (557)
T KOG3785|consen 532 RMKPNSQCEF 541 (557)
T ss_pred HhCCCchHHH
Confidence 6655555543
No 68
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.25 E-value=1.4e-09 Score=94.79 Aligned_cols=236 Identities=11% Similarity=0.008 Sum_probs=169.5
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 009556 111 SSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLD 190 (532)
Q Consensus 111 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 190 (532)
|-.=-+.+.++|.+.|.+.+|.+.++..++. .|-+.||..|-+.|.+..+...|+.+|.+-.+. .+-|+....-+.+
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQAR 298 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHH
Confidence 3333456778888888888888888877765 477778888888888888888888888877664 2234434455667
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 009556 191 YHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVE 270 (532)
Q Consensus 191 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 270 (532)
.+-..++.++|.++|+...+.. ..++.....+...|.-.++.+-|+..++++++.|.. +...|+.+.-+|.-.+++|-
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhh
Confidence 7777888888888888877653 225666666667777788888888888888888865 66677777777777778888
Q ss_pred HHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 009556 271 ALEVFEKMQQESIRPD--IVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENM 348 (532)
Q Consensus 271 A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 348 (532)
++.-|.+....-..|+ ...|-.+-......||+..|.+.|+-....+ .-+...++.+.-.-.+.|++++|..++...
T Consensus 377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 8888877665433333 3456666667777888888888888777653 235567777777777888888888888877
Q ss_pred HhcC
Q 009556 349 KDRG 352 (532)
Q Consensus 349 ~~~~ 352 (532)
....
T Consensus 456 ~s~~ 459 (478)
T KOG1129|consen 456 KSVM 459 (478)
T ss_pred hhhC
Confidence 6553
No 69
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=7.5e-07 Score=84.33 Aligned_cols=410 Identities=11% Similarity=0.113 Sum_probs=227.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHH--HHHHH--
Q 009556 82 KSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNI--LLRGF-- 157 (532)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~--li~~~-- 157 (532)
+=++.+...|++++|.+...++...+ +.+...+..-+-++.+.+++++|+.+.+.-. -..+++. +=.+|
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~------~~~~~~~~~fEKAYc~ 89 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNG------ALLVINSFFFEKAYCE 89 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcc------hhhhcchhhHHHHHHH
Confidence 45677888999999999999999876 6667778888889999999999996554322 1112222 23444
Q ss_pred HhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCc-CHHhHHHHHHHHHcCCChHHH
Q 009556 158 LKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQL-NSFVYGKVIGLYRDNGMWKKA 236 (532)
Q Consensus 158 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a 236 (532)
.+.+..++|...++.... .+..+...-...+.+.|++++|+++|+.+.+.+.+- +...-..++.+-.. -.+
T Consensus 90 Yrlnk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~ 161 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQV 161 (652)
T ss_pred HHcccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhH
Confidence 468999999998883332 234467777888999999999999999997764331 11111222211111 011
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC-------C-C-----CCCHHH-HHHHHHHHHHcCC
Q 009556 237 VGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQE-------S-I-----RPDIVT-WNSLIRWHCKAGD 302 (532)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~-~-----~p~~~~-~~~li~~~~~~g~ 302 (532)
. +.+..... ...+-..+......+...|++.+|+++++...+. + . .-+..+ --.|.-.+-..|+
T Consensus 162 ~-~~q~v~~v-~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 162 Q-LLQSVPEV-PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred H-HHHhccCC-CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 1 11111111 0111111122233456677777777777766211 0 0 000111 1123334556777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHcc-------------------------------------------
Q 009556 303 VAKALELFTQMQEQGFYPDPKI----FITIISCLGEL------------------------------------------- 335 (532)
Q Consensus 303 ~~~A~~~~~~m~~~~~~~~~~~----~~~ll~~~~~~------------------------------------------- 335 (532)
-++|..++...+.... +|... -+.++..-...
T Consensus 240 t~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l 318 (652)
T KOG2376|consen 240 TAEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLAL 318 (652)
T ss_pred hHHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777765532 22211 11111110000
Q ss_pred --CCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHH--hcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009556 336 --GKWDVIKKNFENMKDRGHGKIGAIYAILVDIYG--QYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQT 411 (532)
Q Consensus 336 --~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 411 (532)
+..+.+.++.... .+..|. ..+..++.... +...+..+.+++...-+....-...+.-.++......|+++.|
T Consensus 319 ~tnk~~q~r~~~a~l--p~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A 395 (652)
T KOG2376|consen 319 FTNKMDQVRELSASL--PGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVA 395 (652)
T ss_pred HhhhHHHHHHHHHhC--CccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHH
Confidence 0001111100000 011111 22222322222 1223556666666665543322334555666777888999999
Q ss_pred HHHHH--------HhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhcCC
Q 009556 412 VKVLQ--------LMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDI--GISPD----LVTYSTLMKAFIRAKK 477 (532)
Q Consensus 412 ~~~~~--------~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~----~~~~~~l~~~~~~~g~ 477 (532)
.+++. ...+.+..|-. ...+...+.+.++-+.|..++.+.... .-.+. ..++.-+...-.+.|+
T Consensus 396 ~~il~~~~~~~~ss~~~~~~~P~~--V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~ 473 (652)
T KOG2376|consen 396 LEILSLFLESWKSSILEAKHLPGT--VGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGN 473 (652)
T ss_pred HHHHHHHhhhhhhhhhhhccChhH--HHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCc
Confidence 99888 45544444444 445666777777777777777766531 00111 2233444444457799
Q ss_pred cChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhh
Q 009556 478 FHKVPEIYKQMESSGCTPDRKARQILQSALVVLEQRRC 515 (532)
Q Consensus 478 ~~~a~~~~~~m~~~g~~p~~~t~~~l~~a~~~~~~~~~ 515 (532)
-++|..+++++.+. -.+|..+...++.++......+.
T Consensus 474 ~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~d~eka 510 (652)
T KOG2376|consen 474 EEEASSLLEELVKF-NPNDTDLLVQLVTAYARLDPEKA 510 (652)
T ss_pred hHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhcCHHHH
Confidence 99999999999873 24577788888888887766554
No 70
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.24 E-value=1.6e-08 Score=97.45 Aligned_cols=197 Identities=20% Similarity=0.275 Sum_probs=103.8
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhC-----CC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---C--CC-CCCH-H
Q 009556 258 IIDTFGKYGELVEALEVFEKMQQE-----SI-RPD-IVTWNSLIRWHCKAGDVAKALELFTQMQE---Q--GF-YPDP-K 323 (532)
Q Consensus 258 li~~~~~~g~~~~A~~~~~~m~~~-----~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~--~~-~~~~-~ 323 (532)
+...|...+++++|..+|+++... |. .|. ..+++.|...|.+.|++++|...+++..+ . |. .|.. .
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 344445555555555555544321 11 111 22344444455555555555554444321 1 11 1111 2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhc-----C--CCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcC-------CC
Q 009556 324 IFITIISCLGELGKWDVIKKNFENMKDR-----G--HGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEG-------LQ 389 (532)
Q Consensus 324 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-------~~ 389 (532)
.++.+...|...+++++|..++....+. + .+.-..+++.|...|.+.|++++|+++++.+.... ..
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~ 406 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY 406 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh
Confidence 2344444555556666666555544321 1 11224456667777777777777777776664321 11
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhcc----CCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009556 390 PSGSMFCILANAYAQQGLCEQTVKVLQLMEP----EGI-EPN-LVMLNVLINAFGVAGKYKEALSVYHLMK 454 (532)
Q Consensus 390 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 454 (532)
-....++.+...|.+.+.+.+|.++|.+... .|. .|+ ..+|..|...|...|++++|.++.+...
T Consensus 407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1234566677777777777777777665432 221 222 3567788888888888888888877665
No 71
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.23 E-value=8.6e-07 Score=84.84 Aligned_cols=418 Identities=14% Similarity=0.117 Sum_probs=268.9
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHH
Q 009556 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGF 157 (532)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 157 (532)
..|..++..| ..+++..-+++.+.+.+. .+--..|.....-.+...|+-++|.+......+.. ..+.+.|..+.-.+
T Consensus 9 ~lF~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 9 ALFRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHH
Confidence 4456666665 568899999988888774 34445566555566778899999999988888754 45678899998888
Q ss_pred HhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHH
Q 009556 158 LKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAV 237 (532)
Q Consensus 158 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 237 (532)
....++++|++.|......+. -|...|.-+.-.-.+.++++........+.+... -....|.....++.-.|+...|.
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999987643 5666777776677788888888888777776522 24566788888888999999999
Q ss_pred HHHHHHHHcC-CCCCHHHHHHHHH------HHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 009556 238 GIVEEIREMG-LSLDRQIYNSIID------TFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELF 310 (532)
Q Consensus 238 ~~~~~~~~~~-~~~~~~~~~~li~------~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 310 (532)
.+.++..+.. -.|+...+..... ...+.|..++|.+.+..-... +.-....-.+-...+.+.++.++|..++
T Consensus 164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y 242 (700)
T KOG1156|consen 164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVY 242 (700)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHH
Confidence 9999988764 2466666554433 345678888888887765543 1112222334556788899999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHH-HHHccCCHHHHH-HHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCC
Q 009556 311 TQMQEQGFYPDPKIFITIIS-CLGELGKWDVIK-KNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGL 388 (532)
Q Consensus 311 ~~m~~~~~~~~~~~~~~ll~-~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 388 (532)
..+... .||..-|...+. ++.+..+.-++. .+|....+.- +........=+.......-.+....++....+.|+
T Consensus 243 ~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y-~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~ 319 (700)
T KOG1156|consen 243 RRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY-PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGV 319 (700)
T ss_pred HHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC-cccccchhccHHHhCcchhHHHHHHHHHHHhhcCC
Confidence 999986 567666665554 443333333333 5555544321 11111111111111112222334455666667776
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHH----HHHHHhccCC----------CCCCHH--HHHHHHHHHHhcCCHHHHHHHHHH
Q 009556 389 QPSGSMFCILANAYAQQGLCEQTV----KVLQLMEPEG----------IEPNLV--MLNVLINAFGVAGKYKEALSVYHL 452 (532)
Q Consensus 389 ~~~~~~~~~li~~~~~~g~~~~A~----~~~~~m~~~~----------~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~ 452 (532)
++ ++..+...|-.-...+-.. .+...+...| -+|... ++-.++..+-+.|+++.|..+++.
T Consensus 320 p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~ 396 (700)
T KOG1156|consen 320 PS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDL 396 (700)
T ss_pred Cc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 54 3444444443322221111 1222221111 134443 445677889999999999999999
Q ss_pred HHHCCCCCCHH-HHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Q 009556 453 MKDIGISPDLV-TYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSALVVL 510 (532)
Q Consensus 453 m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~a~~~~ 510 (532)
.++. .|+.+ .|..=.+.+.+.|+.++|..++++..+.+ .||...-..-.+-+++.
T Consensus 397 AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrA 452 (700)
T KOG1156|consen 397 AIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRA 452 (700)
T ss_pred Hhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHc
Confidence 9875 56654 45556688899999999999999998753 34554333333333333
No 72
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.23 E-value=4.9e-08 Score=95.28 Aligned_cols=291 Identities=14% Similarity=0.116 Sum_probs=150.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHh-HHHHHHHHHc---
Q 009556 154 LRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFV-YGKVIGLYRD--- 229 (532)
Q Consensus 154 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~ll~~~~~--- 229 (532)
...+...|++++|++.++.-... +.............+.+.|+.++|..+|..+.+.+ |+... |..+..+..-
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence 34556677788887777664443 32334455666677777777777777777777764 33333 3344333311
Q ss_pred --CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 009556 230 --NGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELV-EALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKA 306 (532)
Q Consensus 230 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 306 (532)
..+.+...++++++.+.- |.......+.-.+.....+. .+...+..+..+|+++ +|+.+-..|....+.+-.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHH
Confidence 124566666676665543 22222222221222211222 3344455555666532 344444444444444444
Q ss_pred HHHHHHHHHC----C----------CCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhc
Q 009556 307 LELFTQMQEQ----G----------FYPDP--KIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQY 370 (532)
Q Consensus 307 ~~~~~~m~~~----~----------~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 370 (532)
.+++...... + -.|.. .++..+...|...|++++|..+++..+++. |..+..|..-...|-+.
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHC
Confidence 4444443321 1 01222 233344455566666666666666666553 23355566666666666
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHH--------HHHHHHHHHHhcCC
Q 009556 371 GRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLV--------MLNVLINAFGVAGK 442 (532)
Q Consensus 371 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--------~~~~li~~~~~~g~ 442 (532)
|++.+|.+.++.....+ .-|..+-+..+..+.+.|++++|.+++....+.+..|-.. .......+|.+.|+
T Consensus 242 G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 66666666666666554 2344445555556666666666666666665544322111 11233455566666
Q ss_pred HHHHHHHHHHHH
Q 009556 443 YKEALSVYHLMK 454 (532)
Q Consensus 443 ~~~A~~~~~~m~ 454 (532)
+..|++.|....
T Consensus 321 ~~~ALk~~~~v~ 332 (517)
T PF12569_consen 321 YGLALKRFHAVL 332 (517)
T ss_pred HHHHHHHHHHHH
Confidence 666665555443
No 73
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.21 E-value=9.6e-09 Score=98.96 Aligned_cols=252 Identities=16% Similarity=0.205 Sum_probs=170.7
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhC-----CC-CCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC-CC-C
Q 009556 256 NSIIDTFGKYGELVEALEVFEKMQQE-----SI-RPDIVT-WNSLIRWHCKAGDVAKALELFTQMQEQ-----GF-YP-D 321 (532)
Q Consensus 256 ~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~~-~ 321 (532)
..+..+|...|+++.|+.+++...+. |. .|.+.+ .+.+...|...+++++|..+|+++... |- .| -
T Consensus 203 ~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~v 282 (508)
T KOG1840|consen 203 RNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAV 282 (508)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 33455555555555555555444332 11 123332 234677889999999999999998642 21 12 2
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhc-----CC-CCC-HhHHHHHHHHHHhcCCcccHHHHHHHHHHc---CCCC-
Q 009556 322 PKIFITIISCLGELGKWDVIKKNFENMKDR-----GH-GKI-GAIYAILVDIYGQYGRFRDPEECIAALKLE---GLQP- 390 (532)
Q Consensus 322 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~- 390 (532)
..++..|..+|.+.|++++|...++.+.+. +. .+. ...++.+...+...+++++|..+++...+. -+.+
T Consensus 283 a~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~ 362 (508)
T KOG1840|consen 283 AATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGED 362 (508)
T ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcccc
Confidence 355677777899999999998887776531 11 122 344667788889999999999998866431 1222
Q ss_pred ---CHHHHHHHHHHHHhcCCHHHHHHHHHHhccC-----C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----C
Q 009556 391 ---SGSMFCILANAYAQQGLCEQTVKVLQLMEPE-----G-IEP-NLVMLNVLINAFGVAGKYKEALSVYHLMKD----I 456 (532)
Q Consensus 391 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~ 456 (532)
-..+++.|...|...|++++|.+++++.... | ..+ ....++.|...|.+.+++.+|.++|.+... .
T Consensus 363 ~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~ 442 (508)
T KOG1840|consen 363 NVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLC 442 (508)
T ss_pred chHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHh
Confidence 2467999999999999999999999987542 1 122 245678899999999999999999987642 2
Q ss_pred CC-CCC-HHHHHHHHHHHHhcCCcChHHHHHHHHHh---C---CCCCCHHHHHHHHHHH
Q 009556 457 GI-SPD-LVTYSTLMKAFIRAKKFHKVPEIYKQMES---S---GCTPDRKARQILQSAL 507 (532)
Q Consensus 457 ~~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~---~---g~~p~~~t~~~l~~a~ 507 (532)
|. .|+ ..+|..|...|.+.|++++|.++.+.... . ...|+..........+
T Consensus 443 g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (508)
T KOG1840|consen 443 GPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPTVEDEKLRLADL 501 (508)
T ss_pred CCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcchhHHHHhhhHH
Confidence 32 233 34789999999999999999999888762 1 3445555444444333
No 74
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.21 E-value=7.8e-08 Score=93.91 Aligned_cols=293 Identities=15% Similarity=0.124 Sum_probs=213.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc-
Q 009556 117 SLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNA- 195 (532)
Q Consensus 117 ~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~- 195 (532)
-....+...|++++|++.++.-... +.............+.+.|+.++|..++..+.+.++ .|..-|..+..+..-.
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhc
Confidence 3456678899999999999875543 344456677888999999999999999999999764 4444555555555222
Q ss_pred ----CChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 009556 196 ----GRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWK-KAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVE 270 (532)
Q Consensus 196 ----~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 270 (532)
.+.+...++|+++...- |.......+.-.+.....+. .+...+..+...|++ .+++.+-..|....+.+-
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAI 161 (517)
T ss_pred ccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHH
Confidence 25678888999887763 44444444433333323333 445566677777754 367777777876666666
Q ss_pred HHHHHHHHHhC----C----------CCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 009556 271 ALEVFEKMQQE----S----------IRPDIV--TWNSLIRWHCKAGDVAKALELFTQMQEQGFYPD-PKIFITIISCLG 333 (532)
Q Consensus 271 A~~~~~~m~~~----~----------~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~ll~~~~ 333 (532)
..+++...... + -.|... ++.-+...|...|++++|++++++.++. .|+ +..|..-...+-
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilK 239 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILK 239 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHH
Confidence 66676665432 1 124443 3456678889999999999999999986 444 677888888999
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHH------H--HHHHHHHHhc
Q 009556 334 ELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSM------F--CILANAYAQQ 405 (532)
Q Consensus 334 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~------~--~~li~~~~~~ 405 (532)
+.|++.+|...++.....+ ..|..+-+-.+..+.++|+.++|.+++..+.+.+..|.... | .-...+|.+.
T Consensus 240 h~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~ 318 (517)
T PF12569_consen 240 HAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ 318 (517)
T ss_pred HCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999887 45677778889999999999999999999987775443221 2 3346788899
Q ss_pred CCHHHHHHHHHHhc
Q 009556 406 GLCEQTVKVLQLME 419 (532)
Q Consensus 406 g~~~~A~~~~~~m~ 419 (532)
|++..|++.|....
T Consensus 319 ~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 319 GDYGLALKRFHAVL 332 (517)
T ss_pred hhHHHHHHHHHHHH
Confidence 99999998888765
No 75
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.20 E-value=3.1e-09 Score=92.67 Aligned_cols=230 Identities=11% Similarity=0.085 Sum_probs=161.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHh-HHHHHHHHH
Q 009556 150 YNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFV-YGKVIGLYR 228 (532)
Q Consensus 150 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~ll~~~~ 228 (532)
-+.+.++|.+.|.+.+|.+.|+.-.+. .|-+.||..|-.+|.+..+++.|+.++.+-.+. -|-.+| ..-+.+.+-
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHH
Confidence 367888888999999998888877664 366778888888898888899998888887764 343344 445566777
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 009556 229 DNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALE 308 (532)
Q Consensus 229 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 308 (532)
..++.++|.++++...+.. +.++.....+...|.-.++.+-|+..++++.+-|+. +...|+.+.-+|.-.++++-++.
T Consensus 302 am~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHH
Confidence 7888888888888887764 334545555555666677788888888888877775 66677777777777778888877
Q ss_pred HHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHc
Q 009556 309 LFTQMQEQGFYPD--PKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLE 386 (532)
Q Consensus 309 ~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 386 (532)
-|.+....--.|+ ..+|-.+-......|++..|.+.|+.....+ +.+...++.|.-.-.+.|++++|..++......
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 7777665432232 2344455555566777777777777766554 345566666666666777777777777666543
No 76
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=5.5e-06 Score=75.16 Aligned_cols=398 Identities=14% Similarity=0.102 Sum_probs=246.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCChHhHHHHHHHH
Q 009556 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVG-RTLEADAIFQEMVCFGFNPKLRFYNILLRGF 157 (532)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 157 (532)
.-...+..|...++-+.|+....+.+... ...--+.++..+-+.| +..++.--+.+....- +.-... |.+.
T Consensus 99 ~~r~~aecy~~~~n~~~Ai~~l~~~p~t~---r~p~inlMla~l~~~g~r~~~~vl~ykevvrec-p~aL~~----i~~l 170 (564)
T KOG1174|consen 99 QRRRAAECYRQIGNTDMAIETLLQVPPTL---RSPRINLMLARLQHHGSRHKEAVLAYKEVIREC-PMALQV----IEAL 170 (564)
T ss_pred HHHHHHHHHHHHccchHHHHHHhcCCccc---cchhHHHHHHHHHhccccccHHHHhhhHHHHhc-chHHHH----HHHH
Confidence 33456777778899999988877665432 1222333444443333 2222222233322211 111111 1111
Q ss_pred HhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh--cCChHHHHHHHHHHHHCC-CCcCHHhHHHHHHHHHcCCChH
Q 009556 158 LKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVN--AGRLDDTWLIINEMRSKG-FQLNSFVYGKVIGLYRDNGMWK 234 (532)
Q Consensus 158 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~ 234 (532)
.+.+ +..+...=..|-...++|+..+...-+.+++. .++...|...+-.+.... ++-|+.....+.+.+...|+.+
T Consensus 171 l~l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~ 249 (564)
T KOG1174|consen 171 LELG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYF 249 (564)
T ss_pred HHHh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCch
Confidence 1111 00011111122222333444444444444433 444455555555444333 4557778888999999999999
Q ss_pred HHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009556 235 KAVGIVEEIREMGLSLDR-QIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQM 313 (532)
Q Consensus 235 ~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 313 (532)
+|+..|+.....+ |+. .......-.+.+.|+.+....+...+.... .-....|-.-.......++++.|+.+-++.
T Consensus 250 ~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~ 326 (564)
T KOG1174|consen 250 QAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKC 326 (564)
T ss_pred HHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHH
Confidence 9999999887653 222 222222333567788888888777776541 113334444455566778899999998888
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHH
Q 009556 314 QEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGS 393 (532)
Q Consensus 314 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 393 (532)
.+.. +-+...|..-...+...++.++|.-.|+...... |.+...|..|+..|...|++.+|...-+...+. .+.+..
T Consensus 327 I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~ 403 (564)
T KOG1174|consen 327 IDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSAR 403 (564)
T ss_pred hccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchh
Confidence 7653 2233444444556778899999999999887764 567889999999999999999998877765543 233444
Q ss_pred HHHHHH-HHHHhcC-CHHHHHHHHHHhccCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009556 394 MFCILA-NAYAQQG-LCEQTVKVLQLMEPEGIEPN-LVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMK 470 (532)
Q Consensus 394 ~~~~li-~~~~~~g-~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 470 (532)
+...+. ..+.-.- --++|.++++..... .|+ ....+.+...|...|+.+++..+++.... ..||....+.|.+
T Consensus 404 ~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd 479 (564)
T KOG1174|consen 404 SLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGD 479 (564)
T ss_pred hhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHH
Confidence 544442 2333222 347788888877654 454 34567778889999999999999998876 4689999999999
Q ss_pred HHHhcCCcChHHHHHHHHHhCCCCCCH
Q 009556 471 AFIRAKKFHKVPEIYKQMESSGCTPDR 497 (532)
Q Consensus 471 ~~~~~g~~~~a~~~~~~m~~~g~~p~~ 497 (532)
.+...+.+++|.+.|..... +.|+.
T Consensus 480 ~~~A~Ne~Q~am~~y~~ALr--~dP~~ 504 (564)
T KOG1174|consen 480 IMRAQNEPQKAMEYYYKALR--QDPKS 504 (564)
T ss_pred HHHHhhhHHHHHHHHHHHHh--cCccc
Confidence 99999999999999998886 56644
No 77
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.12 E-value=2.1e-07 Score=85.97 Aligned_cols=218 Identities=14% Similarity=0.046 Sum_probs=149.3
Q ss_pred CChHHHHHHHHHHHHcC-CCC--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHH
Q 009556 91 GDIDEAMALLAQMQALG-FHP--SSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGS 167 (532)
Q Consensus 91 g~~~~A~~~~~~m~~~~-~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 167 (532)
+..+.++.-+.++.... ..| ....|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 46677788887777543 112 23457778888889999999999999998875 456788999999999999999999
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcC
Q 009556 168 RLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMG 247 (532)
Q Consensus 168 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 247 (532)
..|++..+... -+..+|..+...+...|++++|.+.|++..+.. |+..........+...++.++|...+++.....
T Consensus 119 ~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELDP-TYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 99999987543 346678888888889999999999999988763 332222222233445678899999987655432
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC---CC--C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 009556 248 LSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQE---SI--R-PDIVTWNSLIRWHCKAGDVAKALELFTQMQEQG 317 (532)
Q Consensus 248 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~--~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 317 (532)
.++...+ .+...+ .|+...+ +.+..+.+. .+ . .....|..+...+.+.|++++|...|++..+..
T Consensus 196 -~~~~~~~-~~~~~~--lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 -DKEQWGW-NIVEFY--LGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred -CccccHH-HHHHHH--ccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2232222 233222 4444333 233333321 11 0 123567788888888899999999998888754
No 78
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.12 E-value=2.1e-06 Score=83.97 Aligned_cols=129 Identities=10% Similarity=0.114 Sum_probs=93.5
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Q 009556 359 IYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFG 438 (532)
Q Consensus 359 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 438 (532)
.|....+.+.+.+..++|...+.+..+.. +-....|......+...|..++|.+.|....... +-++....++..++.
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLL 729 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 45556677777788888877777776543 3345556666666777788888888888776543 334567778888888
Q ss_pred hcCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHh
Q 009556 439 VAGKYKEALS--VYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES 490 (532)
Q Consensus 439 ~~g~~~~A~~--~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (532)
+.|+..-|.. ++..+.+.+. .+...|..+...+.+.|+.+.|.+.|....+
T Consensus 730 e~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 8887777777 8888877653 3677888888888888888888888887765
No 79
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=1.2e-06 Score=79.21 Aligned_cols=270 Identities=10% Similarity=0.006 Sum_probs=135.3
Q ss_pred CCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHH
Q 009556 143 FNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQ-ETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYG 221 (532)
Q Consensus 143 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 221 (532)
++.|+.....+...+...|+.++|...|++....+ |+. .......-.+.+.|+.++...+...+.... +-....|.
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wf 304 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWF 304 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhh
Confidence 34455666666666666666666666666665522 211 111222223345566666555555554331 01122222
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 009556 222 KVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAG 301 (532)
Q Consensus 222 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 301 (532)
.-........+++.|+.+-++.++.+ +.+...+-.-...+...++.++|.-.|+....... -+...|.-|+.+|...|
T Consensus 305 V~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~ 382 (564)
T KOG1174|consen 305 VHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQK 382 (564)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhc
Confidence 22333344556666666666555543 12333333333445556666666666666554311 24556666666666666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-ccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHH
Q 009556 302 DVAKALELFTQMQEQGFYPDPKIFITII-SCLG-ELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEEC 379 (532)
Q Consensus 302 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll-~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 379 (532)
.+.+|.-.-+..... +..+..+...+. ..|. ...--++|.++++...+.. |.-....+.+...+...|..++++.+
T Consensus 383 ~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~L 460 (564)
T KOG1174|consen 383 RFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKL 460 (564)
T ss_pred hHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC-CccHHHHHHHHHHHHhhCccchHHHH
Confidence 666666554443322 222333333331 1111 2223455666666555443 22234445555566666666666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccC
Q 009556 380 IAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPE 421 (532)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 421 (532)
++..... .||....+.|.+.+...+.+.+|.+.|....+.
T Consensus 461 Le~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 461 LEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 6655543 455555666666666666666666666555543
No 80
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.09 E-value=2e-07 Score=77.80 Aligned_cols=198 Identities=13% Similarity=-0.003 Sum_probs=142.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHH
Q 009556 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFL 158 (532)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 158 (532)
+.-.|.-+|.+.|++..|..-+++..+.. +.+..+|..+...|-+.|+.+.|.+.|+...+.. +.+..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 34556667888999999999999988875 4556788888888888999999999998888765 456677888888888
Q ss_pred hcCChhHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHH
Q 009556 159 KKGLLGLGSRLLMVMEDMGICR-NQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAV 237 (532)
Q Consensus 159 ~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 237 (532)
..|++++|...|++......-+ -..+|..+.-+..+.|+++.|.+.|++..+.... ...+...+.+...+.|++..|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 8888888888888887652222 2346777777777888888888888877766322 3445566666777777777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 009556 238 GIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQ 280 (532)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 280 (532)
..++.....+. ++..+.-..|..-...|+.+.+.+.=..+..
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 77777666654 5666666666666666766666655444443
No 81
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.09 E-value=5.1e-07 Score=78.11 Aligned_cols=291 Identities=13% Similarity=0.105 Sum_probs=200.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHH-HHHHHH
Q 009556 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNI-LLRGFL 158 (532)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~-li~~~~ 158 (532)
+.+.+..+.+..+++.|++++..-.++. +.+....+.+..+|-...++..|-+.|+++-.. .|...-|.. -...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 4667777888999999999999988874 347778888889999999999999999998764 355544432 345667
Q ss_pred hcCChhHHHHHHHHHHHcCCCcCHHHHHHHHH--HHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHH
Q 009556 159 KKGLLGLGSRLLMVMEDMGICRNQETYEILLD--YHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKA 236 (532)
Q Consensus 159 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~--~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 236 (532)
+.+.+..|+++...|.+. ++...-..-+. .....+++..+..+.++....| +..+.+...-...+.|+++.|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 788999999999888753 22222222222 2345678888888888776433 445555555566789999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC-------------CCHH---------------
Q 009556 237 VGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIR-------------PDIV--------------- 288 (532)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-------------p~~~--------------- 288 (532)
.+-|+...+-+--.....||..+.. .+.|+++.|++...++.++|++ ||+.
T Consensus 164 vqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~e 242 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVE 242 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHH
Confidence 9999999886544566777766654 4678899999999999887643 1211
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 009556 289 TWNSLIRWHCKAGDVAKALELFTQMQE-QGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIY 367 (532)
Q Consensus 289 ~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 367 (532)
.+|.-...+.+.|+++.|.+.+-+|.- .....|++|...+.-.- ..+++.+..+-+.-+...+ |....++..++-.|
T Consensus 243 AfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLlly 320 (459)
T KOG4340|consen 243 AFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLY 320 (459)
T ss_pred HhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 122223345677888888888887752 22345666665543322 2334555555555555554 34567788888888
Q ss_pred HhcCCcccHHHHHHH
Q 009556 368 GQYGRFRDPEECIAA 382 (532)
Q Consensus 368 ~~~g~~~~a~~~~~~ 382 (532)
|+..-++-|-+++.+
T Consensus 321 CKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 321 CKNEYFDLAADVLAE 335 (459)
T ss_pred hhhHHHhHHHHHHhh
Confidence 888888877777655
No 82
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.05 E-value=4.8e-07 Score=75.62 Aligned_cols=197 Identities=14% Similarity=0.016 Sum_probs=138.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 009556 115 YASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVN 194 (532)
Q Consensus 115 ~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 194 (532)
...+.-.|...|+...|..-+++.++.. +.+..+|..+...|-+.|+.+.|.+-|++..+... .+..+.|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHHHh
Confidence 4456667778888888888888888765 44566777788888888888888888888777543 455677777777888
Q ss_pred cCChHHHHHHHHHHHHCCCCc-CHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 009556 195 AGRLDDTWLIINEMRSKGFQL-NSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALE 273 (532)
Q Consensus 195 ~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 273 (532)
.|++++|...|++......-+ -..+|..+.-+..+.|+.+.|...|++..+... ......-.+.....+.|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchHHHH
Confidence 888888888888776653222 345677777777777888888888777777642 234455566666777777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009556 274 VFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQE 315 (532)
Q Consensus 274 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 315 (532)
.++.....+. ++..+.-..|+.--..|+.+.+-++=..+..
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 7777766655 5666666666666677777776666555554
No 83
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.04 E-value=3.5e-07 Score=84.47 Aligned_cols=218 Identities=10% Similarity=0.027 Sum_probs=130.8
Q ss_pred CCHHHHHHHHHHHHHCC-CCC--ChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHH
Q 009556 126 GRTLEADAIFQEMVCFG-FNP--KLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTW 202 (532)
Q Consensus 126 ~~~~~A~~~~~~~~~~g-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 202 (532)
+..+.++.-+.++.... ..| ....|..+...|.+.|+.++|...|++..+..+ .+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHH
Confidence 45566777777776432 112 234567777778888888888888888877543 45677888888888888888888
Q ss_pred HHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 009556 203 LIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQES 282 (532)
Q Consensus 203 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 282 (532)
+.|++..+.... +..++..+..++...|++++|.+.++...+.. |+..........+...++.++|...|.+.....
T Consensus 119 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 888888765322 45666777777778888888888888877754 222211122222344567788888776544321
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---C--C-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 009556 283 IRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQG---F--Y-PDPKIFITIISCLGELGKWDVIKKNFENMKDRG 352 (532)
Q Consensus 283 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~--~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 352 (532)
.|+. |. ........|+...+ +.+..+.+.. . . .....|..+...+.+.|++++|...|++..+.+
T Consensus 196 -~~~~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 -DKEQ--WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred -Cccc--cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2222 21 11222334554443 2444443210 0 0 112455666666667777777777777666655
No 84
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.02 E-value=5.3e-06 Score=79.58 Aligned_cols=23 Identities=26% Similarity=0.146 Sum_probs=12.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhcc
Q 009556 398 LANAYAQQGLCEQTVKVLQLMEP 420 (532)
Q Consensus 398 li~~~~~~g~~~~A~~~~~~m~~ 420 (532)
...++...|+.+.|..+++.+..
T Consensus 270 ~a~~~~~~~~~~~a~~~L~~l~~ 292 (355)
T cd05804 270 AALALAGAGDKDALDKLLAALKG 292 (355)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHH
Confidence 34445555666666666655543
No 85
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.01 E-value=4.1e-06 Score=80.34 Aligned_cols=197 Identities=12% Similarity=0.011 Sum_probs=113.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHH
Q 009556 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGF-HPSSI-SYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (532)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~-~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (532)
.|..+...+...|+.+++.+.+.+..+... ..+.. ........+...|++++|.+.+++..+.. +.+...+.. ...
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~ 85 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHH
Confidence 344555566666778777766666554421 11221 12222344557788888888888877653 334444432 222
Q ss_pred HH----hcCChhHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCC
Q 009556 157 FL----KKGLLGLGSRLLMVMEDMGICRN-QETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNG 231 (532)
Q Consensus 157 ~~----~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 231 (532)
+. ..+..+.+.+.++.. ....|+ ......+...+...|++++|.+.+++..+.... +...+..+...+...|
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g 162 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcC
Confidence 22 234444555444431 111222 233445556777788888888888887776422 4556666777777778
Q ss_pred ChHHHHHHHHHHHHcCCC-CCH--HHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 009556 232 MWKKAVGIVEEIREMGLS-LDR--QIYNSIIDTFGKYGELVEALEVFEKMQQ 280 (532)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~-~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~ 280 (532)
++++|...+++..+.... ++. ..|..+...+...|++++|..++++...
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 888888777777654321 222 2344566677777777777777777643
No 86
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.99 E-value=1.7e-05 Score=77.79 Aligned_cols=413 Identities=12% Similarity=0.080 Sum_probs=255.2
Q ss_pred HHcCChHHHHHH----HHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCCh
Q 009556 88 CKLGDIDEAMAL----LAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLL 163 (532)
Q Consensus 88 ~~~g~~~~A~~~----~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 163 (532)
.-..+.+++.-. +.++....+.-|...|..+.-++...|+++.+.+.|++....- .-....|..+...|.-.|.-
T Consensus 295 i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~ 373 (799)
T KOG4162|consen 295 IPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSD 373 (799)
T ss_pred cccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccc
Confidence 344556666543 3333333456678889999889999999999999999887533 34567788888888888988
Q ss_pred hHHHHHHHHHHHcCCCcC-HHHHHHHHHHHH-hcCChHHHHHHHHHHHHC--CC--CcCHHhHHHHHHHHHcC-------
Q 009556 164 GLGSRLLMVMEDMGICRN-QETYEILLDYHV-NAGRLDDTWLIINEMRSK--GF--QLNSFVYGKVIGLYRDN------- 230 (532)
Q Consensus 164 ~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~-~~~~~~~a~~~~~~m~~~--~~--~~~~~~~~~ll~~~~~~------- 230 (532)
..|..+++.-......|+ ...+-..-..|. +.+..+++++.-.+..+. +. ......|..+.-+|...
T Consensus 374 s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~ 453 (799)
T KOG4162|consen 374 SKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLK 453 (799)
T ss_pred hHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCCh
Confidence 888888887665442343 333433334443 345667777766666541 11 11233344444333321
Q ss_pred ----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 009556 231 ----GMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKA 306 (532)
Q Consensus 231 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 306 (532)
....++++.+++..+.+.. |..+...+.--|+..++++.|.+...+..+-+..-+...|..+.-.+...+++.+|
T Consensus 454 seR~~~h~kslqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~A 532 (799)
T KOG4162|consen 454 SERDALHKKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEA 532 (799)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHH
Confidence 1245677778888776533 33333333445777889999999999888875566888899888888999999999
Q ss_pred HHHHHHHHHC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc----------------------------CCCCCH
Q 009556 307 LELFTQMQEQ-GFYPDPKIFITIISCLGELGKWDVIKKNFENMKDR----------------------------GHGKIG 357 (532)
Q Consensus 307 ~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----------------------------~~~~~~ 357 (532)
+.+.+...+. |. |......-+..-...++.+++......+... ......
T Consensus 533 l~vvd~al~E~~~--N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~ 610 (799)
T KOG4162|consen 533 LDVVDAALEEFGD--NHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAI 610 (799)
T ss_pred HHHHHHHHHHhhh--hhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccc
Confidence 9998876643 21 1111111111112233433333322222110 000111
Q ss_pred hHHHHHHHHHHhcC---CcccHHHHHHHHHHcCCCC--C------HHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCC
Q 009556 358 AIYAILVDIYGQYG---RFRDPEECIAALKLEGLQP--S------GSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPN 426 (532)
Q Consensus 358 ~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~--~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 426 (532)
.++..+.......+ ..+.. +....+.| + ...|......+.+.++.++|...+.+..... +-.
T Consensus 611 s~sr~ls~l~a~~~~~~~se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~ 683 (799)
T KOG4162|consen 611 STSRYLSSLVASQLKSAGSELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLS 683 (799)
T ss_pred hhhHHHHHHHHhhhhhcccccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhh
Confidence 22222211111000 00000 11111112 2 2346666778888999999988887776542 445
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcChHHH--HHHHHHhCCCCC-CHHHHHH
Q 009556 427 LVMLNVLINAFGVAGKYKEALSVYHLMKDIGISP-DLVTYSTLMKAFIRAKKFHKVPE--IYKQMESSGCTP-DRKARQI 502 (532)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~--~~~~m~~~g~~p-~~~t~~~ 502 (532)
...|......+...|..++|.+.|...... .| ++.+..++...+.+.|+..-|.. ++..+.+ +.| +...|..
T Consensus 684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr--~dp~n~eaW~~ 759 (799)
T KOG4162|consen 684 ASVYYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALR--LDPLNHEAWYY 759 (799)
T ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh--hCCCCHHHHHH
Confidence 667777778888999999999999988764 44 45588999999999999888888 8999987 445 6678999
Q ss_pred HHHHHHHHhhhhh
Q 009556 503 LQSALVVLEQRRC 515 (532)
Q Consensus 503 l~~a~~~~~~~~~ 515 (532)
+...+...|+-+.
T Consensus 760 LG~v~k~~Gd~~~ 772 (799)
T KOG4162|consen 760 LGEVFKKLGDSKQ 772 (799)
T ss_pred HHHHHHHccchHH
Confidence 9988888887653
No 87
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=1.4e-05 Score=75.17 Aligned_cols=91 Identities=11% Similarity=0.066 Sum_probs=52.2
Q ss_pred HHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCH
Q 009556 364 VDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKY 443 (532)
Q Consensus 364 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 443 (532)
...+.+.|++..|...+.++++.+ +-|...|....-+|.+.|.+..|++-.+...+.. ++....|.-=..++....++
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~y 442 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEY 442 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHH
Confidence 344455666666766666666654 4456666666666666666666666555555442 22233333334444445566
Q ss_pred HHHHHHHHHHHHC
Q 009556 444 KEALSVYHLMKDI 456 (532)
Q Consensus 444 ~~A~~~~~~m~~~ 456 (532)
+.|.+.|++..+.
T Consensus 443 dkAleay~eale~ 455 (539)
T KOG0548|consen 443 DKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHHHHhc
Confidence 6666666666654
No 88
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.97 E-value=5.4e-06 Score=90.16 Aligned_cols=336 Identities=11% Similarity=0.016 Sum_probs=177.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCC------CcC--HHHHHHHHHHH
Q 009556 121 ALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGI------CRN--QETYEILLDYH 192 (532)
Q Consensus 121 ~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~------~~~--~~~~~~li~~~ 192 (532)
.+...|+++.+..+++.+.......+..........+...|+++++...++.....-. .+. ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3444566666666655542111111222233344455567788888777776644210 011 11122233445
Q ss_pred HhcCChHHHHHHHHHHHHCCCCcCH----HhHHHHHHHHHcCCChHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHh
Q 009556 193 VNAGRLDDTWLIINEMRSKGFQLNS----FVYGKVIGLYRDNGMWKKAVGIVEEIREMGL-----SLDRQIYNSIIDTFG 263 (532)
Q Consensus 193 ~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~ 263 (532)
...|++++|...+++....-...+. ...+.+...+...|++++|...+++...... ......+..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 5677888888887776653111121 2334445556677888888877777654211 111234445556667
Q ss_pred ccCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHH
Q 009556 264 KYGELVEALEVFEKMQQE----SIR--P-DIVTWNSLIRWHCKAGDVAKALELFTQMQEQ--GFYPD--PKIFITIISCL 332 (532)
Q Consensus 264 ~~g~~~~A~~~~~~m~~~----~~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~--~~~~~~ll~~~ 332 (532)
..|++++|...+++..+. +.. + ....+..+...+...|++++|...+.+.... ...+. ...+..+....
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 778888888777765432 211 1 1223344455566678888888777776432 11111 22333344566
Q ss_pred HccCCHHHHHHHHHHHHhcCCCC-CHhHH-----HHHHHHHHhcCCcccHHHHHHHHHHcCCCCC---HHHHHHHHHHHH
Q 009556 333 GELGKWDVIKKNFENMKDRGHGK-IGAIY-----AILVDIYGQYGRFRDPEECIAALKLEGLQPS---GSMFCILANAYA 403 (532)
Q Consensus 333 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~-----~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~ 403 (532)
...|+.+.|...+.......... ....+ ...+..+...|+.+.|...+........... ...+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 67788888877777664321100 00001 1112334456777777777655433211111 011334556677
Q ss_pred hcCCHHHHHHHHHHhccC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009556 404 QQGLCEQTVKVLQLMEPE----GIEPN-LVMLNVLINAFGVAGKYKEALSVYHLMKDI 456 (532)
Q Consensus 404 ~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 456 (532)
..|+.++|...+++.... |..++ ..+...+..++...|+.++|...+.+..+.
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 778888887777766432 22221 234555666777788888888887777654
No 89
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.96 E-value=9.1e-06 Score=88.41 Aligned_cols=336 Identities=12% Similarity=0.002 Sum_probs=212.7
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC------CcCH--HhHHHHHHHH
Q 009556 156 GFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGF------QLNS--FVYGKVIGLY 227 (532)
Q Consensus 156 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~------~~~~--~~~~~ll~~~ 227 (532)
.....|+++.+...++.+.......+..........+...|+++++...+......-- .+.. .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3445677777777666653211112222234445556678999999999887754311 1111 1122233455
Q ss_pred HcCCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHH
Q 009556 228 RDNGMWKKAVGIVEEIREMGLSLDR----QIYNSIIDTFGKYGELVEALEVFEKMQQE----SI-RPDIVTWNSLIRWHC 298 (532)
Q Consensus 228 ~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~~~~~li~~~~ 298 (532)
...|++++|...+++..+.....+. ...+.+...+...|++++|...+++.... |. .....++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6899999999999998764212221 34455666778899999999999887642 11 111234455667788
Q ss_pred HcCCHHHHHHHHHHHHH----CCCC--C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhc----CCCCCHhHHHHHHHHH
Q 009556 299 KAGDVAKALELFTQMQE----QGFY--P-DPKIFITIISCLGELGKWDVIKKNFENMKDR----GHGKIGAIYAILVDIY 367 (532)
Q Consensus 299 ~~g~~~~A~~~~~~m~~----~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~ 367 (532)
..|++++|...+++... .+.. + ....+..+...+...|++++|...+.+.... +.......+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 99999999999888653 2221 1 2233445555677789999999998887643 1111233445566778
Q ss_pred HhcCCcccHHHHHHHHHHcCCCC-CHHHH-----HHHHHHHHhcCCHHHHHHHHHHhccCCCCCCH---HHHHHHHHHHH
Q 009556 368 GQYGRFRDPEECIAALKLEGLQP-SGSMF-----CILANAYAQQGLCEQTVKVLQLMEPEGIEPNL---VMLNVLINAFG 438 (532)
Q Consensus 368 ~~~g~~~~a~~~~~~~~~~~~~~-~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~ 438 (532)
...|+.++|.+.++......... ....+ ...+..+...|+.+.|.+.+............ ..+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 88999999999988875421111 11111 11224455678999999998776543211111 12346677888
Q ss_pred hcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCcChHHHHHHHHHhC
Q 009556 439 VAGKYKEALSVYHLMKDI----GISPD-LVTYSTLMKAFIRAKKFHKVPEIYKQMESS 491 (532)
Q Consensus 439 ~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 491 (532)
..|++++|...+++.... |..++ ..+...+..++.+.|+.++|.+.+.+..+.
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999987642 33332 235667778889999999999999999864
No 90
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.95 E-value=1.7e-06 Score=74.93 Aligned_cols=326 Identities=12% Similarity=0.076 Sum_probs=217.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHH-HHHH
Q 009556 113 ISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEI-LLDY 191 (532)
Q Consensus 113 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-li~~ 191 (532)
.-+.+++..+.+..++..|++++..-.++. +.+....+.|..+|....++..|-..++++... .|....|.. -...
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQS 87 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHH
Confidence 346677888889999999999999888775 347788899999999999999999999999874 355555543 3456
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHH--HHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH
Q 009556 192 HVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIG--LYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELV 269 (532)
Q Consensus 192 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 269 (532)
+.+.+.+.+|+.+...|.+. |+...-..-+. .....+++..+..+.++....| +..+.+.......+.|+++
T Consensus 88 LY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHH
Confidence 67889999999999888763 22221111222 2345788888888888776433 4555566666678999999
Q ss_pred HHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-------------CHH--------HHHH
Q 009556 270 EALEVFEKMQQE-SIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYP-------------DPK--------IFIT 327 (532)
Q Consensus 270 ~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-------------~~~--------~~~~ 327 (532)
+|.+-|+...+- |.. ....||.-+ +..+.|+++.|+++..++.++|++. |.. .-+.
T Consensus 162 aAvqkFqaAlqvsGyq-pllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sa 239 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQ-PLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSA 239 (459)
T ss_pred HHHHHHHHHHhhcCCC-chhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHH
Confidence 999999988775 555 456777655 4557889999999999998877532 211 1122
Q ss_pred HHH-------HHHccCCHHHHHHHHHHHHhc-CCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHH
Q 009556 328 IIS-------CLGELGKWDVIKKNFENMKDR-GHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILA 399 (532)
Q Consensus 328 ll~-------~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 399 (532)
++. .+.+.++++.|.+.+.+|..+ ....|+.+...+.-. -..+++.+..+-+.-+...++ ....||..++
T Consensus 240 l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlL 317 (459)
T KOG4340|consen 240 LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLL 317 (459)
T ss_pred HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHH
Confidence 333 345778899999888888633 334566665543322 124556666666666665543 3457888899
Q ss_pred HHHHhcCCHHHHHHHHHHhccCCCC-CCHHHHHHHHHHHHh-cCCHHHHHHHHHH
Q 009556 400 NAYAQQGLCEQTVKVLQLMEPEGIE-PNLVMLNVLINAFGV-AGKYKEALSVYHL 452 (532)
Q Consensus 400 ~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~-~g~~~~A~~~~~~ 452 (532)
-.||++.-++-|-+++.+-...... .+...|+ |++++.. .-..++|.+-++.
T Consensus 318 llyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~ 371 (459)
T KOG4340|consen 318 LLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDG 371 (459)
T ss_pred HHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999998888764332111 1223333 3344333 3345555554443
No 91
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.93 E-value=5e-05 Score=71.59 Aligned_cols=410 Identities=10% Similarity=0.127 Sum_probs=242.6
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHH
Q 009556 75 FSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILL 154 (532)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li 154 (532)
-|..+|+.||+.+..+ .++++.+.++++... ++..+..|..-|..-...++++....+|.+.+..- .+...|..-+
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl 93 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYL 93 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHH
Confidence 3778999999988665 999999999999865 35567889999999999999999999999988653 4566777666
Q ss_pred HHHHh-cCChhH----HHHHHHHHH-HcCCCc-CHHHHHHHHHHH---------HhcCChHHHHHHHHHHHHCCCCc---
Q 009556 155 RGFLK-KGLLGL----GSRLLMVME-DMGICR-NQETYEILLDYH---------VNAGRLDDTWLIINEMRSKGFQL--- 215 (532)
Q Consensus 155 ~~~~~-~g~~~~----A~~~~~~m~-~~~~~~-~~~~~~~li~~~---------~~~~~~~~a~~~~~~m~~~~~~~--- 215 (532)
+.-.+ .|+... ..+.|+-.. +.|..+ +-..|+..+..+ ..+.+.+...++|+++....+.-
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 54443 233333 233344333 334333 223466555543 33445667777888876542221
Q ss_pred ---CHHhHHHHHHHH-------HcCCChHHHHHHHHHHHH--cCCCCCH---------------HHHHHHHHHHhccC--
Q 009556 216 ---NSFVYGKVIGLY-------RDNGMWKKAVGIVEEIRE--MGLSLDR---------------QIYNSIIDTFGKYG-- 266 (532)
Q Consensus 216 ---~~~~~~~ll~~~-------~~~~~~~~a~~~~~~~~~--~~~~~~~---------------~~~~~li~~~~~~g-- 266 (532)
|-.+|..-++.. -+...+..|.++++++.. .|+..+. ..|-.+|..=-..+
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~ 253 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLR 253 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcc
Confidence 111222222211 123456667777776643 2322111 12333333221111
Q ss_pred ----CH--HHHHHHHHHHH-hCCCCCCHHH-HHHH----HHHHHHcCC-------HHHHHHHHHHHHHCCCCCCHHHHHH
Q 009556 267 ----EL--VEALEVFEKMQ-QESIRPDIVT-WNSL----IRWHCKAGD-------VAKALELFTQMQEQGFYPDPKIFIT 327 (532)
Q Consensus 267 ----~~--~~A~~~~~~m~-~~~~~p~~~~-~~~l----i~~~~~~g~-------~~~A~~~~~~m~~~~~~~~~~~~~~ 327 (532)
.. ....-.+++.. --+..|++-- |... -+.+...|+ -+++..++++..+.-..-+..+|..
T Consensus 254 t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~ 333 (656)
T KOG1914|consen 254 TLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFA 333 (656)
T ss_pred cccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 01111112111 1122222211 0111 112233333 3455555555543322223344433
Q ss_pred HHHHHHcc---CCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCC-CHHHHHHHHHHHH
Q 009556 328 IISCLGEL---GKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQP-SGSMFCILANAYA 403 (532)
Q Consensus 328 ll~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~ 403 (532)
+.+.--.. ...+....+++++.......-..+|..+++.-.+..-+..|..+|.+..+.+..+ +....++++.-||
T Consensus 334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c 413 (656)
T KOG1914|consen 334 LADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC 413 (656)
T ss_pred HHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh
Confidence 33321111 1255556666666655444445677788888888888889999999998887766 6667777777665
Q ss_pred hcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCcChH
Q 009556 404 QQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDL--VTYSTLMKAFIRAKKFHKV 481 (532)
Q Consensus 404 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~a 481 (532)
.++.+-|.++|+.-.+. ...+..--...++-+...++-..|..+|++....++.||. ..|..++.--..-|+...+
T Consensus 414 -skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si 491 (656)
T KOG1914|consen 414 -SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSI 491 (656)
T ss_pred -cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHH
Confidence 46888899998875544 1233444467778888888888999999999887666654 5788998888888999888
Q ss_pred HHHHHHHHh
Q 009556 482 PEIYKQMES 490 (532)
Q Consensus 482 ~~~~~~m~~ 490 (532)
.++-+++..
T Consensus 492 ~~lekR~~~ 500 (656)
T KOG1914|consen 492 LKLEKRRFT 500 (656)
T ss_pred HHHHHHHHH
Confidence 888887764
No 92
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=2.9e-05 Score=78.28 Aligned_cols=321 Identities=11% Similarity=0.118 Sum_probs=179.0
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHH
Q 009556 111 SSISYASLIEALASVGRTLEADAIFQEMVCFG--FNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEIL 188 (532)
Q Consensus 111 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 188 (532)
|+.-.+..++++...+-..+-+++++++.-.. +..+...-|.|+-...+. +.....+..+++...+. |+ +
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa-~~------i 1054 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDA-PD------I 1054 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCc-hh------H
Confidence 45555566777777777777777777776321 112222233333333332 33344444444443221 22 2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 009556 189 LDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGEL 268 (532)
Q Consensus 189 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 268 (532)
...+..++-+++|+.+|++... +....+.++. .-+..+.|.+.-++.. .+.+|..+..+-.+.|.+
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~~-----n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v 1120 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFDM-----NVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLV 1120 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhcc-----cHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCch
Confidence 3444556667777777766422 3444444443 2344555555444332 345677777777777777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 009556 269 VEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENM 348 (532)
Q Consensus 269 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 348 (532)
.+|.+-|-+.. |+..|..++....+.|.+++-.+.+...++..-.|... +.++-+|++.++..+.+.++
T Consensus 1121 ~dAieSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi--- 1189 (1666)
T KOG0985|consen 1121 KDAIESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI--- 1189 (1666)
T ss_pred HHHHHHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh---
Confidence 77777664432 56677777777777788877777777666654444433 35677777777766665543
Q ss_pred HhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHH
Q 009556 349 KDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLV 428 (532)
Q Consensus 349 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 428 (532)
..|+......+.+-+...+.++.|.-+|..+ .-|..|...+...|++..|.+.-++.- +..
T Consensus 1190 ----~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKAn------s~k 1250 (1666)
T KOG0985|consen 1190 ----AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKAN------STK 1250 (1666)
T ss_pred ----cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhcc------chh
Confidence 2355555566666666667776666666543 236666666666777766665544432 445
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHH
Q 009556 429 MLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQM 488 (532)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 488 (532)
||..+-.+|...+.+.-|. |-..++.....-..-|+..|-..|-+++.+.+++.-
T Consensus 1251 tWK~VcfaCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1251 TWKEVCFACVDKEEFRLAQ-----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred HHHHHHHHHhchhhhhHHH-----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 6666555665554443332 222222233334455555555555555555554443
No 93
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.89 E-value=2.3e-07 Score=84.44 Aligned_cols=247 Identities=15% Similarity=0.106 Sum_probs=128.8
Q ss_pred HhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHH
Q 009556 193 VNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEAL 272 (532)
Q Consensus 193 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 272 (532)
.-.|++..++.-.+ ........+......+.+++...|+.+.++ .++.+.. .|.......+...+...++-+.+.
T Consensus 12 fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHH
Confidence 34566666654444 222222223334445566667777655432 3333322 445444444443333334444555
Q ss_pred HHHHHHHhCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 009556 273 EVFEKMQQESIRPDIVTWN-SLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDR 351 (532)
Q Consensus 273 ~~~~~m~~~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 351 (532)
.-+++.......++..++. .....+...|++++|++++..- .+.......+..+.+.++++.|.+.++.|.+.
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~ 160 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI 160 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4444433332222222222 2223445567777777766542 34556666777777777777777777777654
Q ss_pred CCCCCHhHHHHHH----HHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCH
Q 009556 352 GHGKIGAIYAILV----DIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNL 427 (532)
Q Consensus 352 ~~~~~~~~~~~li----~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 427 (532)
+ .| .+...+. ..+...+.+.+|..+|+++.+. ..+++.+.+.+..+....|++++|.+++.+..+.. +-|.
T Consensus 161 ~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~ 235 (290)
T PF04733_consen 161 D--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDP 235 (290)
T ss_dssp S--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHH
T ss_pred C--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCH
Confidence 3 22 2222233 3222234577777777776544 35666777777777777777777777777766553 3355
Q ss_pred HHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 009556 428 VMLNVLINAFGVAGKY-KEALSVYHLMKD 455 (532)
Q Consensus 428 ~~~~~li~~~~~~g~~-~~A~~~~~~m~~ 455 (532)
.++..++.+....|+. +.+.+++.++..
T Consensus 236 d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 236 DTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 5666666666666666 556667776665
No 94
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=0.00017 Score=68.91 Aligned_cols=387 Identities=13% Similarity=0.097 Sum_probs=206.2
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCChHhHHHHH
Q 009556 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALA--SVGRTLEADAIFQEMVCFGFNPKLRFYNILL 154 (532)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~--~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li 154 (532)
...+..=+-++.+.++|++|+.+.+.-.... ..+... +=.+|| +.+..++|+..++-.. +.+..+...-.
T Consensus 46 ~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-~~~~~~---fEKAYc~Yrlnk~Dealk~~~~~~----~~~~~ll~L~A 117 (652)
T KOG2376|consen 46 EDAIRCKVVALIQLDKYEDALKLIKKNGALL-VINSFF---FEKAYCEYRLNKLDEALKTLKGLD----RLDDKLLELRA 117 (652)
T ss_pred HhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-hcchhh---HHHHHHHHHcccHHHHHHHHhccc----ccchHHHHHHH
Confidence 3444455566778899999986655432110 111111 234444 6788898888887222 23344666667
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHH---HHHcC
Q 009556 155 RGFLKKGLLGLGSRLLMVMEDMGICR-NQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIG---LYRDN 230 (532)
Q Consensus 155 ~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~---~~~~~ 230 (532)
..+.+.|++++|..+|+.+.+.+.+- +...-..++.+-.. -.+ +.+......| ..+|..+.+ .+...
T Consensus 118 QvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~----~~~q~v~~v~-e~syel~yN~Ac~~i~~ 188 (652)
T KOG2376|consen 118 QVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQV----QLLQSVPEVP-EDSYELLYNTACILIEN 188 (652)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhH----HHHHhccCCC-cchHHHHHHHHHHHHhc
Confidence 78888999999999999987654311 11111111111000 000 0112221222 334444443 33456
Q ss_pred CChHHHHHHHHHHHHcC-------CCCC------H-HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHH----HHH
Q 009556 231 GMWKKAVGIVEEIREMG-------LSLD------R-QIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVT----WNS 292 (532)
Q Consensus 231 ~~~~~a~~~~~~~~~~~-------~~~~------~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~----~~~ 292 (532)
|++.+|+++++...+.+ -.-+ . .+-..|.-.+-..|+.++|.+++......... |... -|.
T Consensus 189 gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NN 267 (652)
T KOG2376|consen 189 GKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA-DEPSLAVAVNN 267 (652)
T ss_pred ccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC-CchHHHHHhcc
Confidence 77777777776662211 0000 0 11223334455667777777777666654321 2211 111
Q ss_pred HHHHHH---------------------------------------------HcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 009556 293 LIRWHC---------------------------------------------KAGDVAKALELFTQMQEQGFYPDPKIFIT 327 (532)
Q Consensus 293 li~~~~---------------------------------------------~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 327 (532)
++..-. -.+..+.+.++.... .+..| ...+..
T Consensus 268 Lva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~l--p~~~p-~~~~~~ 344 (652)
T KOG2376|consen 268 LVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASL--PGMSP-ESLFPI 344 (652)
T ss_pred hhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhC--CccCc-hHHHHH
Confidence 111000 000111111111111 01222 233444
Q ss_pred HHHHHHcc--CCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHH--------HHHHcCCCCCHHHHHH
Q 009556 328 IISCLGEL--GKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIA--------ALKLEGLQPSGSMFCI 397 (532)
Q Consensus 328 ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~--------~~~~~~~~~~~~~~~~ 397 (532)
++..+.+. .....+..++...-+........+.-.++......|+++.|.+++. .+.+.+..| .+...
T Consensus 345 ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~a 422 (652)
T KOG2376|consen 345 LLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGA 422 (652)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHH
Confidence 44443322 2356666666666555433345566677888889999999999998 555554444 45566
Q ss_pred HHHHHHhcCCHHHHHHHHHHhccC--CCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009556 398 LANAYAQQGLCEQTVKVLQLMEPE--GIEPNLV----MLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKA 471 (532)
Q Consensus 398 li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 471 (532)
+...+.+.++-+.|..++.+.... .-.+... ++..+...-.+.|+-++|..+++++.+. .++|..+...++.+
T Consensus 423 iv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a 501 (652)
T KOG2376|consen 423 IVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTA 501 (652)
T ss_pred HHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHH
Confidence 777788888777777777665432 0011222 3333344445679999999999999885 35688888999998
Q ss_pred HHhcCCcChHHHHHHHH
Q 009556 472 FIRAKKFHKVPEIYKQM 488 (532)
Q Consensus 472 ~~~~g~~~~a~~~~~~m 488 (532)
|++. +.+.|..+-+.+
T Consensus 502 ~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 502 YARL-DPEKAESLSKKL 517 (652)
T ss_pred HHhc-CHHHHHHHhhcC
Confidence 8875 356666655544
No 95
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.79 E-value=2.4e-07 Score=84.27 Aligned_cols=253 Identities=12% Similarity=0.120 Sum_probs=133.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCCh
Q 009556 84 IQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLL 163 (532)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 163 (532)
|+-+.-.|++..++.-.+ .....-..+......+.+++...|+.+.++ .++.+.. .|.......+...+...++-
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccch
Confidence 444556688888876665 222211222334556677778888766543 3333333 55555555554444333344
Q ss_pred hHHHHHHHHHHHcCCC-cCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHH
Q 009556 164 GLGSRLLMVMEDMGIC-RNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEE 242 (532)
Q Consensus 164 ~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 242 (532)
+.+..-+++....... .+..........+...|++++|++++..- .+.......+..+.+.++++.|.+.++.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444433333222222 12222223334555667777777776542 2455556666777777777777777777
Q ss_pred HHHcCCCCCHHHH---HHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 009556 243 IREMGLSLDRQIY---NSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFY 319 (532)
Q Consensus 243 ~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 319 (532)
|.+.+ .|.... .+.+..+.....+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+..+.. +
T Consensus 157 ~~~~~--eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~ 232 (290)
T PF04733_consen 157 MQQID--EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-P 232 (290)
T ss_dssp HHCCS--CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--C
T ss_pred HHhcC--CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-c
Confidence 76653 232221 22222222233577777777776554 44566667777777777777777777777765443 2
Q ss_pred CCHHHHHHHHHHHHccCCH-HHHHHHHHHHHhc
Q 009556 320 PDPKIFITIISCLGELGKW-DVIKKNFENMKDR 351 (532)
Q Consensus 320 ~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~ 351 (532)
-++.+...++.+....|+. +.+.+.+.++...
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 2455566666666666665 5555666665544
No 96
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.77 E-value=1.4e-05 Score=77.71 Aligned_cols=191 Identities=17% Similarity=0.276 Sum_probs=103.0
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 009556 261 TFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDV 340 (532)
Q Consensus 261 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 340 (532)
+......+.+|+.+++.+.+... -..-|..+...|+..|+++.|.++|-+.- .+.-.|..|.+.|+|+.
T Consensus 741 aai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHH
Confidence 33445556666666666655422 12235555666666666666666664421 23345566666666666
Q ss_pred HHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcc
Q 009556 341 IKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEP 420 (532)
Q Consensus 341 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 420 (532)
|.++-.+.. +.......|-+-..-+-+.|++.+|++++-.+. .|+. .|..|-+.|..+..+++.++-..
T Consensus 810 a~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~ 878 (1636)
T KOG3616|consen 810 AFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHG 878 (1636)
T ss_pred HHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhCh
Confidence 666554432 222334445444555556666666666654432 2322 35566666666666666554322
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHH
Q 009556 421 EGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIY 485 (532)
Q Consensus 421 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 485 (532)
. .-..|-..+..-+-..|+.+.|..-|-+..+ |.+-+..|..++-+++|.++-
T Consensus 879 d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 879 D---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred h---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHH
Confidence 1 1123444556666677777777766654433 455555566666666555443
No 97
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.77 E-value=0.00013 Score=72.13 Aligned_cols=240 Identities=15% Similarity=0.145 Sum_probs=132.4
Q ss_pred CChhhHHHHHHH--HHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-C-------C-
Q 009556 75 FSGNSYNKSIQY--CCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCF-G-------F- 143 (532)
Q Consensus 75 ~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-g-------~- 143 (532)
.|..+=.++++. |..-|+.+.|.+-.+.++.. ..|..+.+.|.+..+++-|.-.+..|... | .
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS~------~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKSD------SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHhhh------HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 455555566553 55667778777777777664 35777777777777766666555544321 1 0
Q ss_pred CCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHH
Q 009556 144 NPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKV 223 (532)
Q Consensus 144 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 223 (532)
.++ .+-....-.....|.+++|..+|++-+. |..|=..|-..|.+++|+++-+.=.+-. =..||...
T Consensus 798 ~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~y 864 (1416)
T KOG3617|consen 798 NGE-EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNY 864 (1416)
T ss_pred CCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHH
Confidence 121 2222223333456777777777776665 3334445566677777776655432221 22344444
Q ss_pred HHHHHcCCChHHHHHHHHHH----------HHcC---------CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC
Q 009556 224 IGLYRDNGMWKKAVGIVEEI----------REMG---------LSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIR 284 (532)
Q Consensus 224 l~~~~~~~~~~~a~~~~~~~----------~~~~---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 284 (532)
..-+...++.+.|++.|++. +... -..|...|......+-..|+++.|+.+|....+
T Consensus 865 A~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---- 940 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---- 940 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----
Confidence 44455555666666555532 1110 123455555566666667788888887776653
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 009556 285 PDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENM 348 (532)
Q Consensus 285 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 348 (532)
|-++++..|-.|+.++|-++-++- | |......+.+.|...|++.+|...|.+.
T Consensus 941 -----~fs~VrI~C~qGk~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 941 -----YFSMVRIKCIQGKTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred -----hhhheeeEeeccCchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 345555566666666666554431 1 3333334555666666666666655544
No 98
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.76 E-value=2e-06 Score=81.44 Aligned_cols=224 Identities=15% Similarity=0.101 Sum_probs=153.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCCh
Q 009556 84 IQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLL 163 (532)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 163 (532)
-.-+.+.|++.+|.-+|+.....+ +-+...|..|....+..++-..|+..+++..+.. +.+......|.-.|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence 344578899999999999888775 5667889999999999988888999999988875 45677888888888888888
Q ss_pred hHHHHHHHHHHHcCCCc--------CHHHHHHHHHHHHhcCChHHHHHHHHHHH-HCCCCcCHHhHHHHHHHHHcCCChH
Q 009556 164 GLGSRLLMVMEDMGICR--------NQETYEILLDYHVNAGRLDDTWLIINEMR-SKGFQLNSFVYGKVIGLYRDNGMWK 234 (532)
Q Consensus 164 ~~A~~~~~~m~~~~~~~--------~~~~~~~li~~~~~~~~~~~a~~~~~~m~-~~~~~~~~~~~~~ll~~~~~~~~~~ 234 (532)
..|.+.++......++- +...-.. ..+.....+....++|-++. ..+..+|..+...|.-.|.-.|+++
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 88988888876542110 0000000 01111122334445555543 3444467777777777777788888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009556 235 KAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPD-IVTWNSLIRWHCKAGDVAKALELFTQM 313 (532)
Q Consensus 235 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 313 (532)
+|.+.|+.++... +-|...||.|...++...+.++|+..|++..+. +|+ +.++..|.-+|...|.+++|.+.|-..
T Consensus 448 raiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 448 RAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 8888888877764 346777888888888878888888888877764 343 233445566677778888877766654
Q ss_pred H
Q 009556 314 Q 314 (532)
Q Consensus 314 ~ 314 (532)
+
T Consensus 525 L 525 (579)
T KOG1125|consen 525 L 525 (579)
T ss_pred H
Confidence 3
No 99
>PF12854 PPR_1: PPR repeat
Probab=98.75 E-value=1.5e-08 Score=58.49 Aligned_cols=32 Identities=38% Similarity=0.703 Sum_probs=21.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009556 422 GIEPNLVMLNVLINAFGVAGKYKEALSVYHLM 453 (532)
Q Consensus 422 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 453 (532)
|+.||..||++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
No 100
>PLN02789 farnesyltranstransferase
Probab=98.75 E-value=2e-05 Score=72.86 Aligned_cols=215 Identities=8% Similarity=0.001 Sum_probs=150.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCChHhHHHHHHHH
Q 009556 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVG-RTLEADAIFQEMVCFGFNPKLRFYNILLRGF 157 (532)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 157 (532)
+++.+-..+...++.++|+.+.+++.+.. +-+..+|+....++...| ++++++..++.+.+.. +.+..+|+.....+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHH
Confidence 45556666677889999999999999874 445567777777777777 6799999999998765 45667787766666
Q ss_pred HhcCCh--hHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcC---CC
Q 009556 158 LKKGLL--GLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDN---GM 232 (532)
Q Consensus 158 ~~~g~~--~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~---~~ 232 (532)
.+.|+. +++..+++++.+... .|..+|+....++...|+++++++.++++++.++. |..+|+.....+.+. |.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccc
Confidence 666653 677888888887654 67888998888888999999999999999887655 566666665555443 22
Q ss_pred h----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 009556 233 W----KKAVGIVEEIREMGLSLDRQIYNSIIDTFGKY----GELVEALEVFEKMQQESIRPDIVTWNSLIRWHCK 299 (532)
Q Consensus 233 ~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 299 (532)
. ++..+....++... +-|...|+-+...+... +...+|.+.+.+..+.++ .+......|+..|+.
T Consensus 195 ~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~ 267 (320)
T PLN02789 195 LEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCE 267 (320)
T ss_pred ccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHh
Confidence 2 35566665666554 34667777777777662 334557777766655332 245555666666654
No 101
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.73 E-value=4.9e-06 Score=80.97 Aligned_cols=241 Identities=16% Similarity=0.124 Sum_probs=185.6
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 009556 248 LSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFIT 327 (532)
Q Consensus 248 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 327 (532)
.+|-...-..+...+.+.|-..+|..+|+++. .|...|.+|+..|+..+|..+..+..+ -+||+..|..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~ 462 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCL 462 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHH
Confidence 34445555667788899999999999998765 477889999999999999999998887 3789999999
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 009556 328 IISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGL 407 (532)
Q Consensus 328 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 407 (532)
+.+......-+++|.++.+....+ .-..+.......++++++.+.|+.-.+.+ +.-..+|-.+..+..+.++
T Consensus 463 LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhh
Confidence 999888888889999888776433 11122222334688999999998776654 3355678888888889999
Q ss_pred HHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHH
Q 009556 408 CEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQ 487 (532)
Q Consensus 408 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 487 (532)
++.|.+.|....... +-+...||.+-.+|.+.|+-.+|...+++..+.+ .-+...|...+....+.|.+++|.+.+.+
T Consensus 535 ~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred hHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 999999999887652 3356789999999999999999999999999877 34566788888888999999999999999
Q ss_pred HHhCCC-CCCHHHHHHHHHHHHH
Q 009556 488 MESSGC-TPDRKARQILQSALVV 509 (532)
Q Consensus 488 m~~~g~-~p~~~t~~~l~~a~~~ 509 (532)
+.+... .-|......++....+
T Consensus 613 ll~~~~~~~d~~vl~~iv~~~~~ 635 (777)
T KOG1128|consen 613 LLDLRKKYKDDEVLLIIVRTVLE 635 (777)
T ss_pred HHHhhhhcccchhhHHHHHHHHh
Confidence 874311 1144444444444443
No 102
>PF12854 PPR_1: PPR repeat
Probab=98.73 E-value=1.6e-08 Score=58.36 Aligned_cols=33 Identities=39% Similarity=0.589 Sum_probs=24.1
Q ss_pred CCCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 009556 72 GEEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQ 104 (532)
Q Consensus 72 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 104 (532)
|..||.++||+||++||+.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 556777777777777777777777777777763
No 103
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.72 E-value=0.00027 Score=66.90 Aligned_cols=391 Identities=12% Similarity=0.153 Sum_probs=231.7
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHH
Q 009556 109 HPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEIL 188 (532)
Q Consensus 109 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 188 (532)
+.|..+|+.||+-+-.. ..+++.+.++++... ++-....|..-|..-.+..+++...++|.+....- -+...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHH
Confidence 67899999999988776 999999999999864 34567889999999999999999999999987653 467778777
Q ss_pred HHHHHhc-CChHH----HHHHHHHH-HHCCCCcC-HHhHHHHHHH---------HHcCCChHHHHHHHHHHHHcCCCCCH
Q 009556 189 LDYHVNA-GRLDD----TWLIINEM-RSKGFQLN-SFVYGKVIGL---------YRDNGMWKKAVGIVEEIREMGLSLDR 252 (532)
Q Consensus 189 i~~~~~~-~~~~~----a~~~~~~m-~~~~~~~~-~~~~~~ll~~---------~~~~~~~~~a~~~~~~~~~~~~~~~~ 252 (532)
++.-.+. ++... ..+.|+-. .+-|+.+- ...|+..+.. +....+++...++++++....+..=.
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 7755443 33222 22233332 33454432 2234444432 22334555666777777654222111
Q ss_pred HHHHH------HHHHH-------hccCCHHHHHHHHHHHHh--CCCCCCH---------------HHHHHHHHHHHHcCC
Q 009556 253 QIYNS------IIDTF-------GKYGELVEALEVFEKMQQ--ESIRPDI---------------VTWNSLIRWHCKAGD 302 (532)
Q Consensus 253 ~~~~~------li~~~-------~~~g~~~~A~~~~~~m~~--~~~~p~~---------------~~~~~li~~~~~~g~ 302 (532)
..|+- -|+.. -+...+..|.++++++.. +|...+. ..|-.+|.---.++-
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL 252 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence 22221 11111 123356677777777653 2321111 113333332111110
Q ss_pred H--------HHHHHHHHH-HHHCCCCCCHHH-HHHHH----HHHHccCC-------HHHHHHHHHHHHhcCCCCCHhHHH
Q 009556 303 V--------AKALELFTQ-MQEQGFYPDPKI-FITII----SCLGELGK-------WDVIKKNFENMKDRGHGKIGAIYA 361 (532)
Q Consensus 303 ~--------~~A~~~~~~-m~~~~~~~~~~~-~~~ll----~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~ 361 (532)
- ....-.+++ |.-.+..|+..- +...+ +.+...|+ .+++..+++..+..-...+..+|.
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 111112222 112233333211 11111 12233333 345566666655443333444555
Q ss_pred HHHHHHHhcCC---cccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCC-CHHHHHHHHHHH
Q 009556 362 ILVDIYGQYGR---FRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEP-NLVMLNVLINAF 437 (532)
Q Consensus 362 ~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~ 437 (532)
.+.+.--..-+ .+.....++++......--..+|..++..-.+..-++.|..+|.++.+.+..+ ++..+++++.-|
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 44433222222 45556666666544322223458888888888888999999999999987777 778888888877
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCH--HHHHHHHH
Q 009556 438 GVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDR--KARQILQS 505 (532)
Q Consensus 438 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~t~~~l~~ 505 (532)
| .++.+-|.++|+.=.+. ...++.--...++-+.+.|+-..+..+|++...+++.||. ..|..++.
T Consensus 413 c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~ 480 (656)
T KOG1914|consen 413 C-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLE 480 (656)
T ss_pred h-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHH
Confidence 7 56789999999976543 3334455567888889999999999999999998888775 45666654
No 104
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.72 E-value=1.2e-05 Score=78.30 Aligned_cols=319 Identities=17% Similarity=0.196 Sum_probs=173.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcC
Q 009556 82 KSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKG 161 (532)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 161 (532)
+.|+.|.+.|.+..|......=.. ...|......+..++.+..-+++|-.+|+++.. ++ ..+.+|-+..
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d----~d-----kale~fkkgd 688 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHD----FD-----KALECFKKGD 688 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC----HH-----HHHHHHHccc
Confidence 467778888888777765432221 134666666666666666666666666666542 11 1122222211
Q ss_pred ChhHHHHHHHHHH----------------HcCCCcC--------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCH
Q 009556 162 LLGLGSRLLMVME----------------DMGICRN--------QETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNS 217 (532)
Q Consensus 162 ~~~~A~~~~~~m~----------------~~~~~~~--------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 217 (532)
-+..|.++-+-.- ..|. .| .......+.+......+.+|+.+++.+.++. .-.
T Consensus 689 af~kaielarfafp~evv~lee~wg~hl~~~~q-~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk--~~s 765 (1636)
T KOG3616|consen 689 AFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQ-LDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQK--TAS 765 (1636)
T ss_pred HHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHh-HHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhc--ccc
Confidence 2222222211110 0000 00 0011122334445566667777777666542 233
Q ss_pred HhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 009556 218 FVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWH 297 (532)
Q Consensus 218 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 297 (532)
..|..+...|+..|+++.|.++|-+.- .++-.|.+|.+.|++++|.++-.+.. |....+..|-+-..-+
T Consensus 766 ~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedl 834 (1636)
T KOG3616|consen 766 GYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDL 834 (1636)
T ss_pred ccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhH
Confidence 446666677777777777777765432 24556777777777777777665543 2333445555555566
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHH
Q 009556 298 CKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPE 377 (532)
Q Consensus 298 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 377 (532)
-..|++.+|.+++-.+. .|+ ..|..|-+.|..+..+++..+-.. ..-..+...+..-|...|+...|+
T Consensus 835 dehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~---d~l~dt~~~f~~e~e~~g~lkaae 902 (1636)
T KOG3616|consen 835 DEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHG---DHLHDTHKHFAKELEAEGDLKAAE 902 (1636)
T ss_pred HhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhCh---hhhhHHHHHHHHHHHhccChhHHH
Confidence 67777777777664432 233 345667777777777766554321 112334445666677778888887
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009556 378 ECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHL 452 (532)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 452 (532)
+.|-+..+ |.+-+..|...+.+++|.++-+. .| ..|..---..+ .++.=--+.|.+++++
T Consensus 903 ~~flea~d---------~kaavnmyk~s~lw~dayriakt---eg-g~n~~k~v~fl--waksiggdaavkllnk 962 (1636)
T KOG3616|consen 903 EHFLEAGD---------FKAAVNMYKASELWEDAYRIAKT---EG-GANAEKHVAFL--WAKSIGGDAAVKLLNK 962 (1636)
T ss_pred HHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhc---cc-cccHHHHHHHH--HHHhhCcHHHHHHHHh
Confidence 77755432 56666777777777777766543 22 22333222233 3333334677777765
No 105
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=0.00014 Score=68.70 Aligned_cols=402 Identities=14% Similarity=0.089 Sum_probs=228.4
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHhHHHHHHHHHhcCCh
Q 009556 85 QYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPK-LRFYNILLRGFLKKGLL 163 (532)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~ 163 (532)
++.+..|+++.|+.+|-+..... ++|.+.|..-..++++.|++++|++=-.+-++. .|+ ...|+-...++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 45678899999999999998886 668999999999999999999998877666664 455 45788888888889999
Q ss_pred hHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHH---HHHHHHHHC---CCCcCHHhHHHHHHHHHcC-------
Q 009556 164 GLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTW---LIINEMRSK---GFQLNSFVYGKVIGLYRDN------- 230 (532)
Q Consensus 164 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~---~~~~~m~~~---~~~~~~~~~~~ll~~~~~~------- 230 (532)
++|+.-|.+-.+... .|...++-+..++.......+.. .++..+... ........|..++..+-+.
T Consensus 87 ~eA~~ay~~GL~~d~-~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDP-SNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHHHHhhcCC-chHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 999999998877543 45666777777762111110000 011111100 0000111222222222111
Q ss_pred CChHHHHHHHHHHHH--------cC-------CCC----------------------CHHHHHHHHHHHhccCCHHHHHH
Q 009556 231 GMWKKAVGIVEEIRE--------MG-------LSL----------------------DRQIYNSIIDTFGKYGELVEALE 273 (532)
Q Consensus 231 ~~~~~a~~~~~~~~~--------~~-------~~~----------------------~~~~~~~li~~~~~~g~~~~A~~ 273 (532)
.......+..-.+.. .+ ..| -..-...+.++..+..+++.|.+
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q 245 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ 245 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence 001111111111000 00 001 01123444555555666666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH-------HHHHHHccCCHHHHHHHHH
Q 009556 274 VFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFIT-------IISCLGELGKWDVIKKNFE 346 (532)
Q Consensus 274 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-------ll~~~~~~~~~~~a~~~~~ 346 (532)
.+....+.. -++.-++....+|...|.+.+....-.+..+.|-. ....|+. +..++.+.++++.+...|.
T Consensus 246 ~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 246 HYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 666655542 23444445555566666665555555554443321 1111111 2224444555666666666
Q ss_pred HHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhccCCCCC
Q 009556 347 NMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGS-MFCILANAYAQQGLCEQTVKVLQLMEPEGIEP 425 (532)
Q Consensus 347 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 425 (532)
+.......|+. ..+....+++....+...-. .|... -...-...+.+.|++..|...+.+++... +-
T Consensus 323 kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~ 390 (539)
T KOG0548|consen 323 KALTEHRTPDL---------LSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PE 390 (539)
T ss_pred HHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-Cc
Confidence 54433222211 11122222222222222211 11110 01111456778899999999999999876 66
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCHHHHHHHH
Q 009556 426 NLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPD-LVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQ 504 (532)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~ 504 (532)
|...|....-+|.+.|.+..|+.=.+..++. .|+ ...|..=..++....++++|.+.|++.++ ..|+..-+..-+
T Consensus 391 Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale--~dp~~~e~~~~~ 466 (539)
T KOG0548|consen 391 DARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALE--LDPSNAEAIDGY 466 (539)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCchhHHHHHHH
Confidence 7889999999999999999999888888775 333 33455555566667889999999999887 447665554444
Q ss_pred HHHHH
Q 009556 505 SALVV 509 (532)
Q Consensus 505 ~a~~~ 509 (532)
+-|..
T Consensus 467 ~rc~~ 471 (539)
T KOG0548|consen 467 RRCVE 471 (539)
T ss_pred HHHHH
Confidence 44444
No 106
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.69 E-value=4.8e-05 Score=75.13 Aligned_cols=242 Identities=16% Similarity=0.212 Sum_probs=158.5
Q ss_pred CCCHhHHHHHHH--HHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHc-C--------
Q 009556 109 HPSSISYASLIE--ALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDM-G-------- 177 (532)
Q Consensus 109 ~~~~~~~~~li~--~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~-------- 177 (532)
.-|..|-..++. .|..-|+.+.|.+-.+.+.. ..+|..+.+.|.+..+++-|.-.+-.|... |
T Consensus 723 ~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~ 796 (1416)
T KOG3617|consen 723 NCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQ 796 (1416)
T ss_pred ccCHHHHHhhhceeEEEEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHH
Confidence 346677777764 46678999999999888874 357999999999999888887666666432 1
Q ss_pred CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 009556 178 ICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNS 257 (532)
Q Consensus 178 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 257 (532)
..++ .+-.-..-.....|.+++|..+|.+.++. ..|-+.|-..|.|++|.++-+.--+.. -..+|..
T Consensus 797 q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~ 863 (1416)
T KOG3617|consen 797 QNGE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYN 863 (1416)
T ss_pred hCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHH
Confidence 1122 22223333446789999999999998764 445567888999999998866433222 2335555
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCC-------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 009556 258 IIDTFGKYGELVEALEVFEKMQQES-------------------IRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGF 318 (532)
Q Consensus 258 li~~~~~~g~~~~A~~~~~~m~~~~-------------------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 318 (532)
...-+-..+|.+.|++.|++..... -..|...|.-....+-..|+.+.|+.+|.....
T Consensus 864 yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--- 940 (1416)
T KOG3617|consen 864 YAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--- 940 (1416)
T ss_pred HHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---
Confidence 5566666788888888877642110 011333344444444555666666666655432
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHH
Q 009556 319 YPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALK 384 (532)
Q Consensus 319 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 384 (532)
|-++++..|-.|+.++|-++-++ .-|....-.+...|...|++.+|...|.+..
T Consensus 941 ------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 ------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 34555666667777777776554 2245566678888888888888888887654
No 107
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.65 E-value=7.2e-06 Score=70.47 Aligned_cols=139 Identities=8% Similarity=0.080 Sum_probs=95.2
Q ss_pred cCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHH-HhcCC--HHHH
Q 009556 370 YGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAF-GVAGK--YKEA 446 (532)
Q Consensus 370 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~--~~~A 446 (532)
.++.+++...++...+.+ +.+...|..+...|...|++++|...+++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 445556666666665554 4567778888888888888888888888877764 44666777777753 56666 4888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhh
Q 009556 447 LSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSALVVLEQR 513 (532)
Q Consensus 447 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~a~~~~~~~ 513 (532)
.+++++..+.+.. +...+..+...+.+.|++++|...|+++.+. ..|+..-.. ++++....+..
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l-~~~~~~r~~-~i~~i~~a~~~ 193 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL-NSPRVNRTQ-LVESINMAKLL 193 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCccHHH-HHHHHHHHHHH
Confidence 8888888876432 6667777888888888888888888888764 344443333 33665555443
No 108
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.64 E-value=0.0003 Score=62.74 Aligned_cols=309 Identities=12% Similarity=0.124 Sum_probs=174.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHH---HHHHHHhcCCHHHHHHHHHHHHHCCCCCChHh-HHHHHHH
Q 009556 81 NKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYAS---LIEALASVGRTLEADAIFQEMVCFGFNPKLRF-YNILLRG 156 (532)
Q Consensus 81 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~---li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~-~~~li~~ 156 (532)
-.+-+.+..+|++..|+.-|....+. |+..|.+ -...|...|+-..|+.=+.+.++. +||-.. -..-...
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchh
Confidence 45666777788888888888887754 3333433 345677778877787777777764 465322 1223345
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHH
Q 009556 157 FLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKA 236 (532)
Q Consensus 157 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 236 (532)
+.+.|.++.|..=|+.+.+... +..+ ...++.+.-..++-+ .....+..+...|+...|
T Consensus 116 llK~Gele~A~~DF~~vl~~~~--s~~~---~~eaqskl~~~~e~~----------------~l~~ql~s~~~~GD~~~a 174 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEP--SNGL---VLEAQSKLALIQEHW----------------VLVQQLKSASGSGDCQNA 174 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCC--Ccch---hHHHHHHHHhHHHHH----------------HHHHHHHHHhcCCchhhH
Confidence 6678888888888887776532 1111 111111111111111 112233344556666667
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 009556 237 VGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQ 316 (532)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 316 (532)
+.....+++.. +-|...+..-..+|...|++..|+.-++...+..- -+..++-.+-..+...|+.+.++...++.++.
T Consensus 175 i~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl 252 (504)
T KOG0624|consen 175 IEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKL 252 (504)
T ss_pred HHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc
Confidence 76666666653 33566666666667777777766665555443322 24444445556666667777766666665543
Q ss_pred CCCCCHHH----HHHH---------HHHHHccCCHHHHHHHHHHHHhcCCCCCHh---HHHHHHHHHHhcCCcccHHHHH
Q 009556 317 GFYPDPKI----FITI---------ISCLGELGKWDVIKKNFENMKDRGHGKIGA---IYAILVDIYGQYGRFRDPEECI 380 (532)
Q Consensus 317 ~~~~~~~~----~~~l---------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~ 380 (532)
.||... |..+ +......++|.++....+...+........ .+..+-.++...+++.+|++..
T Consensus 253 --dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC 330 (504)
T KOG0624|consen 253 --DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQC 330 (504)
T ss_pred --CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHH
Confidence 444321 1111 111234455666666666666554332222 2334555666677777777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccC
Q 009556 381 AALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPE 421 (532)
Q Consensus 381 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 421 (532)
.++.... +.|..++.--..+|.-...++.|+.-|+...+.
T Consensus 331 ~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 331 KEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 7776542 223666666667777777777777777777665
No 109
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.63 E-value=3.1e-05 Score=80.80 Aligned_cols=207 Identities=15% Similarity=0.114 Sum_probs=114.8
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC---ChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHH
Q 009556 110 PSSISYASLIEALASVGRTLEADAIFQEMVCF-GFNP---KLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETY 185 (532)
Q Consensus 110 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 185 (532)
.+...|-..|......++.++|+++.++++.. ++.. -...|.++++.-...|.-+...++|+++.+. .-.-..|
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~ 1533 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVH 1533 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHH
Confidence 33455666666666666677777766666542 1111 1234555555555556666666666666653 1122356
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhc
Q 009556 186 EILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLS-LDRQIYNSIIDTFGK 264 (532)
Q Consensus 186 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~ 264 (532)
..|...|.+.+.+++|.++++.|.+. +.-....|...+..+.+.++-+.|..++.++++.-.. -........+..-.+
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 66666666666666666666666543 2234455666666666666666666666666554111 012223333344455
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 009556 265 YGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYP 320 (532)
Q Consensus 265 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 320 (532)
.|+.+.+..+|+.......+ -...|+..|..-.+.|+.+.+..+|++....++.|
T Consensus 1613 ~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred cCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 66666666666665544221 34456666666666666666666666666655544
No 110
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=0.00047 Score=69.98 Aligned_cols=261 Identities=13% Similarity=0.150 Sum_probs=144.4
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHH
Q 009556 75 FSGNSYNKSIQYCCKLGDIDEAMALLAQMQALG--FHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNI 152 (532)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ 152 (532)
.|+..-+..++++...+-..+-+++++++.-.+ +..+...-|.++-...+. +..+..+..+++-... .|+
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD-a~~------ 1053 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-APD------ 1053 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC-chh------
Confidence 344555667899999999999999999987532 122233344444444443 4455666666655433 122
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCC
Q 009556 153 LLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGM 232 (532)
Q Consensus 153 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 232 (532)
+...+...+-+++|..+|++.. .+....+.|+.- -+..+.|.+.-++.. .+..|..+..+-.+.|.
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~ 1119 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGL 1119 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCc
Confidence 2344455566677777776654 244444444442 344555555444432 34556666666666666
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009556 233 WKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQ 312 (532)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 312 (532)
..+|.+-|-+. .|+..|.-+++...+.|.+++-.+.+.-..++.-.|.+.+ .+|-+|++.++..+..+++
T Consensus 1120 v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~rl~elE~fi-- 1189 (1666)
T KOG0985|consen 1120 VKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTNRLTELEEFI-- 1189 (1666)
T ss_pred hHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhchHHHHHHHh--
Confidence 66665544221 2555566666666666666666666655555544444443 5666666666655544433
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHH
Q 009556 313 MQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIA 381 (532)
Q Consensus 313 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 381 (532)
.-|+......+.+-|...+.++.|.-++..+ .-|..|...+...|++..|.+.-+
T Consensus 1190 -----~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1190 -----AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred -----cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhh
Confidence 2355555555666666666666665555432 224444455555555555544433
No 111
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.62 E-value=0.00033 Score=62.42 Aligned_cols=313 Identities=12% Similarity=0.104 Sum_probs=157.1
Q ss_pred CChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHH---HHHHHhcCChHHHHHHHHHHHHCCCCcCHHhH-
Q 009556 145 PKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEIL---LDYHVNAGRLDDTWLIINEMRSKGFQLNSFVY- 220 (532)
Q Consensus 145 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l---i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~- 220 (532)
.++.-.--+.+.+...|++..|+.-|....+ .|+..|.++ ...|...|+..-|+.-+.+..+. +||-..-
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve----~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~AR 109 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVE----GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAAR 109 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHc----CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHH
Confidence 3555556677778888888888888888776 344445444 44677788888888888887775 5654322
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 009556 221 GKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKA 300 (532)
Q Consensus 221 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 300 (532)
..-...+.+.|.++.|..-|+.+++....... ..+|.+-+....+ .......+..+...
T Consensus 110 iQRg~vllK~Gele~A~~DF~~vl~~~~s~~~---------------~~eaqskl~~~~e------~~~l~~ql~s~~~~ 168 (504)
T KOG0624|consen 110 IQRGVVLLKQGELEQAEADFDQVLQHEPSNGL---------------VLEAQSKLALIQE------HWVLVQQLKSASGS 168 (504)
T ss_pred HHhchhhhhcccHHHHHHHHHHHHhcCCCcch---------------hHHHHHHHHhHHH------HHHHHHHHHHHhcC
Confidence 22234566788888888888888776422111 0011110000000 00011222333444
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHH
Q 009556 301 GDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECI 380 (532)
Q Consensus 301 g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 380 (532)
|+...|++....+++.. +.|...+..-..+|...|++..|+.-++...+.. ..++...--+-..+...|+.+.++...
T Consensus 169 GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~i 246 (504)
T KOG0624|consen 169 GDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEI 246 (504)
T ss_pred CchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHH
Confidence 55555555555555432 3344445555555555555555554444444332 122233333344444455555555554
Q ss_pred HHHHHcCCCCCHHH----HHHH---------HHHHHhcCCHHHHHHHHHHhccCCCCCCHH---HHHHHHHHHHhcCCHH
Q 009556 381 AALKLEGLQPSGSM----FCIL---------ANAYAQQGLCEQTVKVLQLMEPEGIEPNLV---MLNVLINAFGVAGKYK 444 (532)
Q Consensus 381 ~~~~~~~~~~~~~~----~~~l---------i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~li~~~~~~g~~~ 444 (532)
++-.+. .||... |-.| +......+++.++.+..+...+....-... .+..+-.++...|++.
T Consensus 247 RECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~ 324 (504)
T KOG0624|consen 247 RECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFG 324 (504)
T ss_pred HHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHH
Confidence 444432 222211 1100 111233445555555554444432111111 2233344555566666
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCcChHHHHHHHHHh
Q 009556 445 EALSVYHLMKDIGISPD-LVTYSTLMKAFIRAKKFHKVPEIYKQMES 490 (532)
Q Consensus 445 ~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (532)
+|++.-.+..+. .|| +.++---..+|.-...++.|+.-|+...+
T Consensus 325 eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 325 EAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 666666666543 333 45555555666666666666666666655
No 112
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.60 E-value=4.4e-05 Score=79.69 Aligned_cols=204 Identities=13% Similarity=0.099 Sum_probs=100.8
Q ss_pred HHhHHHHHHHHHcCCChHHHHHHHHHHHHc-CCC---CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 009556 217 SFVYGKVIGLYRDNGMWKKAVGIVEEIREM-GLS---LDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNS 292 (532)
Q Consensus 217 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 292 (532)
...|-..+......++.++|.++.++++.. ++. --...|.++++.-...|.-+...++|+++.+. .-....|..
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~~ 1535 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHLK 1535 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHHH
Confidence 344555555555556666666665555432 110 01234555555555555555556666655543 111234555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC-CCHhHHHHHHHHHHhcC
Q 009556 293 LIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHG-KIGAIYAILVDIYGQYG 371 (532)
Q Consensus 293 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g 371 (532)
|...|.+.+.+++|.++++.|.+. +.-....|...+..+.+..+-+.|..++.++.+.-.. .......-.++.-.+.|
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence 555666666666666666666543 2234455555555555555555555555555443211 12333344444444555
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCC
Q 009556 372 RFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIE 424 (532)
Q Consensus 372 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 424 (532)
+.+.+..+|+...... +-....|+..++.-.++|+.+.++.+|++....++.
T Consensus 1615 DaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred CchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 5555555555544432 122334555555555555555555555555544443
No 113
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.60 E-value=0.0003 Score=71.33 Aligned_cols=396 Identities=12% Similarity=0.023 Sum_probs=197.7
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh--HhHHHHHH
Q 009556 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKL--RFYNILLR 155 (532)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~--~~~~~li~ 155 (532)
..|..|-..|+...+...|.+.|+..-+.+ ..+...+......+++..+++.|..+.-...+.. +.-. .-|....-
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka-~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKA-PAFACKENWVQRGP 570 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc-hHHHHHhhhhhccc
Confidence 346666666666667777777777766654 4455666667777777777777776632222211 1111 11222333
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHH--HHHHHHcCCCh
Q 009556 156 GFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGK--VIGLYRDNGMW 233 (532)
Q Consensus 156 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~--ll~~~~~~~~~ 233 (532)
.|.+.++...|+.-|+...+..+ .|...|..+..+|.+.|++..|.++|.+.... .|+ .+|.. ..-.-+..|.+
T Consensus 571 yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~-s~y~~fk~A~~ecd~GkY 646 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPL-SKYGRFKEAVMECDNGKY 646 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcH-hHHHHHHHHHHHHHhhhH
Confidence 45566667777777776666443 45667778888888888888888888776654 222 22222 22234567777
Q ss_pred HHHHHHHHHHHHcC------CCCCHHHHHHHHHHHhccCCHHHHHHHHHHH-------HhCCCCCCHHHHHHHHHHHHHc
Q 009556 234 KKAVGIVEEIREMG------LSLDRQIYNSIIDTFGKYGELVEALEVFEKM-------QQESIRPDIVTWNSLIRWHCKA 300 (532)
Q Consensus 234 ~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~~~~p~~~~~~~li~~~~~~ 300 (532)
+++...+..+.... ...-..++-.+...+.-.|-...|.+++++- ......-+...|-.+-.+|.-.
T Consensus 647 keald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f 726 (1238)
T KOG1127|consen 647 KEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIF 726 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHH
Confidence 77777777665421 0001112222222222222222222222222 1111111222222222211110
Q ss_pred CCHH------HHHHHH-HHHHHCCCCC--------------------CHHHHHHHHHHHHc----cC----CHHHHHHHH
Q 009556 301 GDVA------KALELF-TQMQEQGFYP--------------------DPKIFITIISCLGE----LG----KWDVIKKNF 345 (532)
Q Consensus 301 g~~~------~A~~~~-~~m~~~~~~~--------------------~~~~~~~ll~~~~~----~~----~~~~a~~~~ 345 (532)
-..+ -.+.++ .+....+..| +..++..+...|.+ .+ +...|...+
T Consensus 727 ~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~ 806 (1238)
T KOG1127|consen 727 SQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCC 806 (1238)
T ss_pred HHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHH
Confidence 0000 000001 0111111111 11222222222211 11 122444455
Q ss_pred HHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCC
Q 009556 346 ENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEP 425 (532)
Q Consensus 346 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 425 (532)
...++.. ..+..+|+.|.-. ...|.+.-|...|-.-.... +....+|..+.-.+.+..+++-|...|...+... +.
T Consensus 807 KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~ 882 (1238)
T KOG1127|consen 807 KKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PL 882 (1238)
T ss_pred HHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcC-ch
Confidence 5544432 2344555555443 44455555555554443332 3345566666667777788888888888887653 44
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHhcCCcChHHH
Q 009556 426 NLVMLNVLINAFGVAGKYKEALSVYHLMK----DIGISPDLVTYSTLMKAFIRAKKFHKVPE 483 (532)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 483 (532)
|...|-.........|+.-++..+|..-- ..|--|+..-|-....-....|+.++-+.
T Consensus 883 nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~ 944 (1238)
T KOG1127|consen 883 NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESIN 944 (1238)
T ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHH
Confidence 66666655555667788888888877521 23445666666666566666776555443
No 114
>PLN02789 farnesyltranstransferase
Probab=98.58 E-value=0.00015 Score=67.19 Aligned_cols=127 Identities=14% Similarity=0.055 Sum_probs=52.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 009556 187 ILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNG-MWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKY 265 (532)
Q Consensus 187 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 265 (532)
.+-..+...+..++|+.+..++++.... +..+|+.--.++...| ++++++..++++.+.+. .+..+|+.....+.+.
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l 119 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHc
Confidence 3333444444555555555555443111 2223333333333333 34445555544444331 2333344333333333
Q ss_pred CCH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 009556 266 GEL--VEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQ 316 (532)
Q Consensus 266 g~~--~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 316 (532)
|+. ++++.+++++.+...+ +..+|+.....+...|+++++++.++++.+.
T Consensus 120 ~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 120 GPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEE 171 (320)
T ss_pred CchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 331 3344444444433221 4444444444444444444444444444443
No 115
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.57 E-value=1.4e-05 Score=75.97 Aligned_cols=250 Identities=13% Similarity=0.056 Sum_probs=136.6
Q ss_pred HcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 009556 228 RDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKAL 307 (532)
Q Consensus 228 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 307 (532)
.+.|++.+|.-.|+..++.+ +-+...|-.|.......++-..|+..+.+..+.... |....-.|.-.|...|.-..|+
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHHH
Confidence 45555666666666555553 224555655655555566555666666555554222 3444455555566666666666
Q ss_pred HHHHHHHHCCCC-----C---CHHHHHHHHHHHHccCCHHHHHHHHHHHH-hcCCCCCHhHHHHHHHHHHhcCCcccHHH
Q 009556 308 ELFTQMQEQGFY-----P---DPKIFITIISCLGELGKWDVIKKNFENMK-DRGHGKIGAIYAILVDIYGQYGRFRDPEE 378 (532)
Q Consensus 308 ~~~~~m~~~~~~-----~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 378 (532)
..++.-.....+ + +...-.. ..+.....+....++|-++. ..+...|+.+...|.-.|--.|.+++|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 666555432100 0 0000000 11112222333444444433 33334666677777777777777777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH--
Q 009556 379 CIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNL-VMLNVLINAFGVAGKYKEALSVYHLMKD-- 455 (532)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~-- 455 (532)
.|+...... +-|..+||.|...++...+.++|+..|.+..+. .|+- .....|.-.|...|.+++|.+.|-..+.
T Consensus 452 cf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 452 CFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 777776643 335666777777777777777777777777664 4443 2344455667777777777776655432
Q ss_pred -C------CCCCCHHHHHHHHHHHHhcCCcChHHHH
Q 009556 456 -I------GISPDLVTYSTLMKAFIRAKKFHKVPEI 484 (532)
Q Consensus 456 -~------~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 484 (532)
. +..++...|.+|=.++...++.+-+.+.
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 1 1223445666666666666666645444
No 116
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.54 E-value=2.6e-05 Score=69.80 Aligned_cols=187 Identities=12% Similarity=0.035 Sum_probs=128.2
Q ss_pred CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH---hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh---
Q 009556 74 EFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSS---ISYASLIEALASVGRTLEADAIFQEMVCFGFNPKL--- 147 (532)
Q Consensus 74 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~--- 147 (532)
......+-.+...+.+.|++++|+..|+++.... +.+. .++..+..++...|++++|...++++.+... .+.
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~ 107 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP-NHPDAD 107 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-CCCchH
Confidence 4455667778888999999999999999988763 2222 4677888999999999999999999987541 122
Q ss_pred HhHHHHHHHHHhc--------CChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHh
Q 009556 148 RFYNILLRGFLKK--------GLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFV 219 (532)
Q Consensus 148 ~~~~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 219 (532)
.++..+..++.+. |+.+.|.+.|+.+.+..+ -+...+..+..... ... .. ...
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~~~~----~~~------~~--------~~~ 168 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYP-NSEYAPDAKKRMDY----LRN------RL--------AGK 168 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCC-CChhHHHHHHHHHH----HHH------HH--------HHH
Confidence 2455555556554 678889999988877532 12222222211110 000 00 011
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 009556 220 YGKVIGLYRDNGMWKKAVGIVEEIREMGL--SLDRQIYNSIIDTFGKYGELVEALEVFEKMQQE 281 (532)
Q Consensus 220 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 281 (532)
...+...+.+.|++++|...++...+... +.....+..+..++.+.|+.++|...++.+...
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 12455678888999999999999887632 223567888899999999999999988888764
No 117
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=0.00015 Score=62.38 Aligned_cols=256 Identities=13% Similarity=0.122 Sum_probs=159.4
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHH
Q 009556 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (532)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (532)
...|| |+-+.-.|++..++..-...... +.++..-..+.++|...|++..... ++.... .|.......+...
T Consensus 10 d~LF~--iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~ 81 (299)
T KOG3081|consen 10 DELFN--IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEY 81 (299)
T ss_pred hhHHH--HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHH
Confidence 34444 55556668888888766655433 2445555566677877777654332 332222 3444444444333
Q ss_pred HHhcCChhHH-HHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHH
Q 009556 157 FLKKGLLGLG-SRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKK 235 (532)
Q Consensus 157 ~~~~g~~~~A-~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 235 (532)
...-++.+.- .++.+.+.......+......-...|+..|++++|++...... +......=+..+.+..+.+.
T Consensus 82 ~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~ 155 (299)
T KOG3081|consen 82 LELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDL 155 (299)
T ss_pred hhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHH
Confidence 3334443333 3344455544333343344444557888999999988877622 23333333455667888889
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHh----ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009556 236 AVGIVEEIREMGLSLDRQIYNSIIDTFG----KYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFT 311 (532)
Q Consensus 236 a~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 311 (532)
|.+.++.|.+.. +..+.+.|..++. ..+.+.+|.-+|++|.++ ..|+..+.+-+..++...|++++|..+++
T Consensus 156 A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~ 231 (299)
T KOG3081|consen 156 AEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLE 231 (299)
T ss_pred HHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHH
Confidence 999999988753 5556665555554 345788999999999875 56788888888888899999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHH-HHHHHHHHHhc
Q 009556 312 QMQEQGFYPDPKIFITIISCLGELGKWDV-IKKNFENMKDR 351 (532)
Q Consensus 312 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~ 351 (532)
....... -++.+...++......|...+ ..+.+.++...
T Consensus 232 eaL~kd~-~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 232 EALDKDA-KDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHhccC-CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 9887643 356777777766666665433 34455555443
No 118
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.49 E-value=0.0002 Score=70.21 Aligned_cols=233 Identities=13% Similarity=0.053 Sum_probs=174.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 009556 185 YEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGK 264 (532)
Q Consensus 185 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 264 (532)
-..+...+...|-..+|..+|+++.. +..++.+|...|+..+|..+..+..+. +|+...|..+.+....
T Consensus 401 q~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccC
Confidence 34567788889999999999987643 566788899999999999998888774 6888899999888877
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 009556 265 YGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKN 344 (532)
Q Consensus 265 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 344 (532)
..-+++|.++++....+ .-..+.....+.++++++.+.|+.-.+.. +.-..+|-....+..+.+++..+.+.
T Consensus 470 ~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred hHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHH
Confidence 77889999998876442 11222223345789999999998876643 23456777777778889999999999
Q ss_pred HHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCC-C
Q 009556 345 FENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEG-I 423 (532)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~ 423 (532)
|....... +.+...||.+-.+|.+.++..+|...+.+..+.+. -+...|...+....+.|.+++|.+.++++.... .
T Consensus 542 F~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 542 FHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-QHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred HHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-CCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence 98887664 55678899999999999999999999999988874 344456667777788999999999988775431 0
Q ss_pred CCCHHHHHHHHHHHH
Q 009556 424 EPNLVMLNVLINAFG 438 (532)
Q Consensus 424 ~p~~~~~~~li~~~~ 438 (532)
..|......++....
T Consensus 620 ~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 620 YKDDEVLLIIVRTVL 634 (777)
T ss_pred cccchhhHHHHHHHH
Confidence 114444444444443
No 119
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.49 E-value=3.2e-05 Score=69.29 Aligned_cols=187 Identities=11% Similarity=-0.024 Sum_probs=128.3
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh---HhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCH--HH
Q 009556 110 PSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKL---RFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQ--ET 184 (532)
Q Consensus 110 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~ 184 (532)
.....+..+...+...|++++|...|+++.+.. +.+. ..+..+..++.+.|++++|...++++.+....... .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 345677788888899999999999999988754 2222 46677888999999999999999999875432111 14
Q ss_pred HHHHHHHHHhc--------CChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHH
Q 009556 185 YEILLDYHVNA--------GRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYN 256 (532)
Q Consensus 185 ~~~li~~~~~~--------~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 256 (532)
+..+...+.+. |+.++|.+.|+.+.+.... +...+..+..... .. .... ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~------~~~~--------~~~~ 170 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LR------NRLA--------GKEL 170 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HH------HHHH--------HHHH
Confidence 54555555544 6788888888888776322 2222222111100 00 0000 1112
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 009556 257 SIIDTFGKYGELVEALEVFEKMQQESI--RPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQ 316 (532)
Q Consensus 257 ~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 316 (532)
.+...|.+.|++++|...++...+... +.....+..+..++.+.|++++|...++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 456678999999999999999887532 223568889999999999999999999988764
No 120
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.47 E-value=1.7e-05 Score=68.01 Aligned_cols=161 Identities=14% Similarity=0.076 Sum_probs=115.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc
Q 009556 116 ASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNA 195 (532)
Q Consensus 116 ~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 195 (532)
..+-..+.-.|+-+....+........ +.|....+..+....+.|++..|...|.+...... +|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p-~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP-TDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC-CChhhhhHHHHHHHHc
Confidence 555566666777777766666654322 44556666678888888888888888888776544 6777888888888888
Q ss_pred CChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 009556 196 GRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVF 275 (532)
Q Consensus 196 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 275 (532)
|++++|..-|.+..+.... +...++.+.-.+.-.|+.+.|..++......+ .-|..+-..+.......|++++|.++.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 8888888888877765322 55667777777788888888888888777664 236666667777778888888888876
Q ss_pred HHHHh
Q 009556 276 EKMQQ 280 (532)
Q Consensus 276 ~~m~~ 280 (532)
..-..
T Consensus 226 ~~e~~ 230 (257)
T COG5010 226 VQELL 230 (257)
T ss_pred ccccc
Confidence 65443
No 121
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.47 E-value=5.6e-05 Score=64.92 Aligned_cols=123 Identities=14% Similarity=0.055 Sum_probs=55.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 009556 115 YASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVN 194 (532)
Q Consensus 115 ~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 194 (532)
.+..+....+.|++..|...+.+..... ++|...|+.+.-+|.+.|+++.|..-|.+..+... -+....+.+.-.+.-
T Consensus 103 l~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L 180 (257)
T COG5010 103 LAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAP-NEPSIANNLGMSLLL 180 (257)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHH
Confidence 3334444444555555555554444333 34444555555555555555555544444444322 233334444444444
Q ss_pred cCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHH
Q 009556 195 AGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIV 240 (532)
Q Consensus 195 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 240 (532)
.|+++.|..++......+.. |...-..+.......|++++|.++.
T Consensus 181 ~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 181 RGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 45555555554444443221 3344444444444445554444443
No 122
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.46 E-value=0.00031 Score=72.70 Aligned_cols=170 Identities=13% Similarity=0.023 Sum_probs=110.8
Q ss_pred CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHH
Q 009556 74 EFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSI-SYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNI 152 (532)
Q Consensus 74 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ 152 (532)
..+...|..|+..+...+++++|+++.+...+. .|+.. .|-.+.-.+.+.++.+++..+ .+
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~-------------- 89 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NL-------------- 89 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hh--------------
Confidence 346678899999999999999999999977765 45543 344444466677776655554 22
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCC
Q 009556 153 LLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGM 232 (532)
Q Consensus 153 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 232 (532)
+.......++.....+...|.+.+ -+...+-.+..+|-+.|+.++|..+|+++.+... -|..+.+.+...|+.. +
T Consensus 90 -l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 90 -IDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADR-DNPEIVKKLATSYEEE-D 164 (906)
T ss_pred -hhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHh-h
Confidence 222223333333333333444421 3444677777888888888888888888877762 2677777777777777 8
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 009556 233 WKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQE 281 (532)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 281 (532)
+++|.+++.+.... |...+++.++.+++.++...
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 88888777776654 44455666666666666654
No 123
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.43 E-value=0.00022 Score=72.98 Aligned_cols=182 Identities=10% Similarity=0.052 Sum_probs=116.7
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHH
Q 009556 109 HPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEIL 188 (532)
Q Consensus 109 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 188 (532)
+.++..+-.|.....+.|++++|..+++...+.. +.+......+...+.+.+++++|+..+++...... -+......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-~~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS-SSAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC-CCHHHHHHH
Confidence 4456777777777778888888888888877654 33456667777777788888888888877776543 455566677
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 009556 189 LDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGEL 268 (532)
Q Consensus 189 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 268 (532)
..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|+...+.. .+-...|+..+ +++
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~~~ 232 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------VDL 232 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------HHH
Confidence 777777888888888888877632 2246777777777778888888888887777653 22334444333 233
Q ss_pred HHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHc
Q 009556 269 VEALEVFEKMQQE----SIRPDIVTWNSLIRWHCKA 300 (532)
Q Consensus 269 ~~A~~~~~~m~~~----~~~p~~~~~~~li~~~~~~ 300 (532)
..-...++.+.-. |....+.+...+|..|.+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 233 NADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 3344455554432 2222344455555555443
No 124
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.40 E-value=0.00018 Score=74.39 Aligned_cols=170 Identities=16% Similarity=0.086 Sum_probs=122.5
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHH
Q 009556 110 PSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILL 189 (532)
Q Consensus 110 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 189 (532)
.+...+..|+..+...+++++|.++.+...+.. +.....|-.+...+.+.++.+.+..+ .++
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 356688999999999999999999999777653 23334444444467777775555444 333
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH
Q 009556 190 DYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELV 269 (532)
Q Consensus 190 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 269 (532)
+......++.-...+...|... .-+...+..+..+|-+.|+.+++..+++++++.. +-|+.+.|.+...|... +.+
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 3344444444444444445443 2255678889999999999999999999999987 55899999999999999 999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 009556 270 EALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQ 316 (532)
Q Consensus 270 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 316 (532)
+|.+++.+.... +...+++..+.++|.++.+.
T Consensus 167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 999998887653 44555677777777776654
No 125
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.40 E-value=2.4e-05 Score=67.23 Aligned_cols=120 Identities=10% Similarity=0.015 Sum_probs=68.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHH-HhcCC--hHHH
Q 009556 125 VGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYH-VNAGR--LDDT 201 (532)
Q Consensus 125 ~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~-~~~~~--~~~a 201 (532)
.++.+++...++...+.. +.|...|..+...|...|++++|...|++..+... .+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 444555555555555544 45556666666666666666666666666665433 3445555555542 44454 3666
Q ss_pred HHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcC
Q 009556 202 WLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMG 247 (532)
Q Consensus 202 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 247 (532)
.+++++..+.+.. +..++..+...+...|++++|...|+.+.+..
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 6666666655333 45555556666666666666666666666553
No 126
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.39 E-value=0.00078 Score=68.49 Aligned_cols=130 Identities=8% Similarity=0.047 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCcCHHHHHHHHHHH
Q 009556 114 SYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMG-ICRNQETYEILLDYH 192 (532)
Q Consensus 114 ~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~ 192 (532)
.|..|...|+...+..+|.+.|+...+.. ..|...+..+...|++..+++.|..+.-..-+.. ...-...|....-.|
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 45555555555545555555555555443 2344445555555555555555555422211110 001111222233344
Q ss_pred HhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHH
Q 009556 193 VNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIRE 245 (532)
Q Consensus 193 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 245 (532)
.+.++...|..-|+...+..++ |...|..+..+|...|.+..|.++|.++..
T Consensus 573 Lea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred cCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 4455555555555555443222 445555555555555555555555555544
No 127
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.38 E-value=2.4e-05 Score=63.50 Aligned_cols=95 Identities=12% Similarity=-0.054 Sum_probs=59.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHh
Q 009556 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLK 159 (532)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 159 (532)
+..+...+.+.|++++|...|+...... +.+...|..+..++...|++++|...|+...+.. +.+...+..+..++.+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 3344555566666666666666666554 4455666666666666666666666666666554 4455666666666666
Q ss_pred cCChhHHHHHHHHHHHc
Q 009556 160 KGLLGLGSRLLMVMEDM 176 (532)
Q Consensus 160 ~g~~~~A~~~~~~m~~~ 176 (532)
.|+.++|...|+...+.
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666666553
No 128
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.35 E-value=0.00025 Score=72.59 Aligned_cols=188 Identities=11% Similarity=0.051 Sum_probs=116.5
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHH
Q 009556 319 YPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCIL 398 (532)
Q Consensus 319 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 398 (532)
..+...+..|.....+.|.+++|..+++...+.. |.+......+...+.+.+++++|...+++..... +-+......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 3456667777777777777777777777777654 4445566667777777777777777777777654 2345556666
Q ss_pred HHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc
Q 009556 399 ANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKF 478 (532)
Q Consensus 399 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 478 (532)
..++.+.|++++|..+|+++...+ +-+..++..+..++.+.|+.++|...|++..+. ..|-..-|+.++ ++.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~------~~~ 232 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL------VDL 232 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH------HHH
Confidence 777777788888888888877632 334677777777888888888888888877654 223334444433 223
Q ss_pred ChHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHHhhhhhc
Q 009556 479 HKVPEIYKQMESSGCTPDRK-ARQILQSALVVLEQRRCK 516 (532)
Q Consensus 479 ~~a~~~~~~m~~~g~~p~~~-t~~~l~~a~~~~~~~~~~ 516 (532)
..-..+++++.-.+...+.. ..-.+-+++...++++..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (694)
T PRK15179 233 NADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRRRNA 271 (694)
T ss_pred HHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhcCcc
Confidence 33445555554333322222 122334444555554443
No 129
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.33 E-value=6e-05 Score=61.21 Aligned_cols=108 Identities=11% Similarity=-0.109 Sum_probs=78.5
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 009556 98 ALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMG 177 (532)
Q Consensus 98 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 177 (532)
.+|++..+. .|+ .+......+...|++++|...|+...... +.+...|..+..++.+.|++++|...|+......
T Consensus 14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 345555543 233 34556677778888888888888887765 4567777888888888888888888888887754
Q ss_pred CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 009556 178 ICRNQETYEILLDYHVNAGRLDDTWLIINEMRSK 211 (532)
Q Consensus 178 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 211 (532)
. .+...+..+..++...|++++|...|+...+.
T Consensus 89 p-~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 89 A-SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred C-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3 56677777777888888888888888887765
No 130
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=0.00082 Score=57.98 Aligned_cols=250 Identities=15% Similarity=0.152 Sum_probs=130.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCh
Q 009556 119 IEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRL 198 (532)
Q Consensus 119 i~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 198 (532)
++-+.-.|.+..++..-...... +.+...-..+-++|...|...... .+++... .|.......+......-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~---~eI~~~~-~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVI---SEIKEGK-ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccc---ccccccc-CChHHHHHHHHHHhhCcchh
Confidence 44555566666666554443322 133444444556666666654332 2233222 23333333333333334443
Q ss_pred HHHH-HHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 009556 199 DDTW-LIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEK 277 (532)
Q Consensus 199 ~~a~-~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 277 (532)
++-. ++.+.+......-+......-...|+..+++++|++...... +......=+..+.+..+.+-|.+.+++
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 344444444333333333344456777777777777665521 222222223345566677777777777
Q ss_pred HHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Q 009556 278 MQQESIRPDIVTWNSLIRWHCK----AGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGH 353 (532)
Q Consensus 278 m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 353 (532)
|.+. -+..|.+.|..++.+ .+....|.-+|++|-++ ..|+..+.+....++...+++++|..+++.......
T Consensus 163 mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 163 MQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 7764 244555555555443 34567777777777653 466777777777777777777777777777776653
Q ss_pred CCCHhHHHHHHHHHHhcCCccc-HHHHHHHHHH
Q 009556 354 GKIGAIYAILVDIYGQYGRFRD-PEECIAALKL 385 (532)
Q Consensus 354 ~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~ 385 (532)
.++.+...++-.-...|...+ ..+.+.+++.
T Consensus 239 -~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 239 -KDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred -CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 334444444444444444333 3334444443
No 131
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.29 E-value=1.3e-06 Score=51.29 Aligned_cols=33 Identities=36% Similarity=0.695 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 009556 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPS 111 (532)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 111 (532)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 678888888888888888888888888887776
No 132
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.26 E-value=4.6e-05 Score=61.43 Aligned_cols=108 Identities=17% Similarity=0.164 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009556 393 SMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAF 472 (532)
Q Consensus 393 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 472 (532)
.....+...+...|++++|.+.++.+...+ +.+...+..+...+...|++++|...+++..+.+ +.+...+..+...+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 334555666667777777777777766543 4456667777777777777777777777776653 33555666667777
Q ss_pred HhcCCcChHHHHHHHHHhCCCCCCHHHHHHHH
Q 009556 473 IRAKKFHKVPEIYKQMESSGCTPDRKARQILQ 504 (532)
Q Consensus 473 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~ 504 (532)
...|++++|.+.++...+ +.|+...+..+.
T Consensus 96 ~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~ 125 (135)
T TIGR02552 96 LALGEPESALKALDLAIE--ICGENPEYSELK 125 (135)
T ss_pred HHcCCHHHHHHHHHHHHH--hccccchHHHHH
Confidence 777777777777777776 445555444333
No 133
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.20 E-value=8.8e-05 Score=59.79 Aligned_cols=96 Identities=13% Similarity=0.051 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 009556 114 SYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHV 193 (532)
Q Consensus 114 ~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 193 (532)
....+...+...|++++|.+.++.+...+ +.+...+..+...+.+.|++++|...++...+.+. .+...+..+...+.
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~ 96 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP-DDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHH
Confidence 34444444555555555555555555433 33444555555555555555555555555544332 33444444555555
Q ss_pred hcCChHHHHHHHHHHHHC
Q 009556 194 NAGRLDDTWLIINEMRSK 211 (532)
Q Consensus 194 ~~~~~~~a~~~~~~m~~~ 211 (532)
..|++++|...|+...+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 555555555555555443
No 134
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.19 E-value=0.011 Score=60.01 Aligned_cols=191 Identities=13% Similarity=0.115 Sum_probs=85.7
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHH
Q 009556 88 CKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGS 167 (532)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 167 (532)
.|.|+.++|..+++.....+. .|..|...+-..|...++.++|..+|++.... .|+......+..+|.|.+++.+-.
T Consensus 54 ~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQ 130 (932)
T KOG2053|consen 54 FRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQ 130 (932)
T ss_pred HHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666655555544432 24555555555555566666666666655543 244555555555555555443322
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHCC-CCcCHHhHHHHHHHHHcCCChHHH
Q 009556 168 RLLMVMEDMGICRNQETYEILLDYHVNAGR----------LDDTWLIINEMRSKG-FQLNSFVYGKVIGLYRDNGMWKKA 236 (532)
Q Consensus 168 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a 236 (532)
++=-++-+. .+-+...+=++++.+.+.-. ..-|.+.++.+.+.+ -.-+..-...-+..+...|++++|
T Consensus 131 kaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~ea 209 (932)
T KOG2053|consen 131 KAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEA 209 (932)
T ss_pred HHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHH
Confidence 221122111 11233333333333332211 112333333333332 111122222222334455556666
Q ss_pred HHHH-HHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 009556 237 VGIV-EEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQES 282 (532)
Q Consensus 237 ~~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 282 (532)
.+++ ....+.-...+...-+.-++.+...+++.+..++-.++..+|
T Consensus 210 l~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 210 LEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 6665 233333233344444455556666666666666666665554
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.18 E-value=0.0012 Score=62.13 Aligned_cols=184 Identities=13% Similarity=0.033 Sum_probs=113.8
Q ss_pred CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHH
Q 009556 73 EEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNI 152 (532)
Q Consensus 73 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ 152 (532)
..|+...+...+.+......-..+-.++.+-.+ +......-.........|++++|+..++.+...- +.|+..+..
T Consensus 270 d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~ 345 (484)
T COG4783 270 DSPDFQLARARIRAKYEALPNQQAADLLAKRSK---RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLEL 345 (484)
T ss_pred CCccHHHHHHHHHHHhccccccchHHHHHHHhC---ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHH
Confidence 345555555555544433333333333322222 1122223333334446677788888888776543 445566666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCC
Q 009556 153 LLRGFLKKGLLGLGSRLLMVMEDMGICRN-QETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNG 231 (532)
Q Consensus 153 li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 231 (532)
....+.+.++..+|.+.++.+.... |+ ...+-.+..+|.+.|++.+|+.++++..... +-|+..|..|..+|...|
T Consensus 346 ~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g 422 (484)
T COG4783 346 AGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELG 422 (484)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhC
Confidence 7777788888888888888877653 33 5566677777888888888888887776653 337777888888888887
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 009556 232 MWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQE 281 (532)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 281 (532)
+..++..-..+ .|.-.|+++.|...+....+.
T Consensus 423 ~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 423 NRAEALLARAE------------------GYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred chHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHh
Confidence 77666554433 344567777777777766654
No 136
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=0.0023 Score=54.95 Aligned_cols=188 Identities=12% Similarity=0.098 Sum_probs=105.2
Q ss_pred cCCHHHHHHHHHHHHhC---C-CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 009556 265 YGELVEALEVFEKMQQE---S-IRPDIV-TWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWD 339 (532)
Q Consensus 265 ~g~~~~A~~~~~~m~~~---~-~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 339 (532)
..+.++..+++.++... | ..++.. .|..++-+....|+.+.|...++.+... ++-+..+-..-...+...|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchh
Confidence 34566777776666532 2 333432 2344444555666777777777776654 2222222222222234456677
Q ss_pred HHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 009556 340 VIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLME 419 (532)
Q Consensus 340 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 419 (532)
+|.++++.+.+.+ |.|..++-.-+...-..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 7777777776655 455555555555555566666666666665554 34566677777777777777777777777666
Q ss_pred cCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHC
Q 009556 420 PEGIEPNLVMLNVLINAFGVAG---KYKEALSVYHLMKDI 456 (532)
Q Consensus 420 ~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~ 456 (532)
-.. +.+.-.+..+...+...| +.+-|.++|.+..+.
T Consensus 182 l~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 182 LIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 442 233444444444443333 345566666666654
No 137
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.16 E-value=4.4e-06 Score=48.64 Aligned_cols=33 Identities=36% Similarity=0.735 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 009556 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHP 110 (532)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 110 (532)
.+||.+|++|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777665
No 138
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.14 E-value=0.0015 Score=61.50 Aligned_cols=156 Identities=14% Similarity=0.089 Sum_probs=109.1
Q ss_pred HHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHH
Q 009556 332 LGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPS-GSMFCILANAYAQQGLCEQ 410 (532)
Q Consensus 332 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~ 410 (532)
+...|+.+.|+..++.++... |.++..+....+.+.+.++.++|.+.++.+.... |+ ...+-.+..+|.+.|++.+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHH
Confidence 445677888888888876653 5667777777888888888888888888887653 33 5556667788888888888
Q ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHh
Q 009556 411 TVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES 490 (532)
Q Consensus 411 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (532)
|..+++...... +-|...|..|.++|...|+..+|..-.. ..+...|+++.|...+....+
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHHHHHHH
Confidence 888888776653 5677888888888888888777764333 345557888888888877776
Q ss_pred CC--CCCCHHHHHHHHHHHHH
Q 009556 491 SG--CTPDRKARQILQSALVV 509 (532)
Q Consensus 491 ~g--~~p~~~t~~~l~~a~~~ 509 (532)
.. -.|+..-+...+..+..
T Consensus 454 ~~~~~~~~~aR~dari~~~~~ 474 (484)
T COG4783 454 QVKLGFPDWARADARIDQLRQ 474 (484)
T ss_pred hccCCcHHHHHHHHHHHHHHH
Confidence 42 23444444444444443
No 139
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.14 E-value=4.7e-06 Score=48.89 Aligned_cols=33 Identities=39% Similarity=0.652 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 009556 429 MLNVLINAFGVAGKYKEALSVYHLMKDIGISPD 461 (532)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 461 (532)
+||+++.+|++.|++++|.++|++|.+.|++||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 456666666666666666666666666665555
No 140
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.11 E-value=0.0041 Score=53.40 Aligned_cols=185 Identities=19% Similarity=0.185 Sum_probs=112.8
Q ss_pred hhHHHHHHHHHHHc---C-CCcCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCH-HhHHHHHHHHHcCCChHHH
Q 009556 163 LGLGSRLLMVMEDM---G-ICRNQE-TYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNS-FVYGKVIGLYRDNGMWKKA 236 (532)
Q Consensus 163 ~~~A~~~~~~m~~~---~-~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~a 236 (532)
.++..+++.++... | ..++.. .|..++-+....|+.+.|..+++.+.+.= |.+ .+-..-...+-..|++++|
T Consensus 28 seevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 28 SEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred HHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhH
Confidence 34444444444321 2 334443 34445556666777777777777776652 322 2222222234456778888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 009556 237 VGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQ 316 (532)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 316 (532)
.++++.+++.+ +.|..++-.=+...-..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.-.
T Consensus 106 ~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 106 IEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 88888887765 456666666666666667766777777766664 4458888888888888888888888888887754
Q ss_pred CCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHhcC
Q 009556 317 GFYPDPKIFITIISCLGELG---KWDVIKKNFENMKDRG 352 (532)
Q Consensus 317 ~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~ 352 (532)
. +.++..+..+...+.-.| +.+.+.+++.+..+..
T Consensus 184 ~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 184 Q-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred C-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 2 234444555555443333 4566677777776654
No 141
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.10 E-value=0.00014 Score=68.71 Aligned_cols=122 Identities=17% Similarity=0.213 Sum_probs=65.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcC
Q 009556 82 KSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKG 161 (532)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 161 (532)
+++..+...++++.|+++|+++.+.. |+ ....+++.+...++-.+|.+++.+..+.. +.+......-...+.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 33444444566666666666666542 33 22335555555555566666666555432 334445555555555666
Q ss_pred ChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009556 162 LLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMR 209 (532)
Q Consensus 162 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 209 (532)
+.+.|+++.+++.+..+ -+..+|..|..+|.+.|+++.|+-.++.+.
T Consensus 249 ~~~lAL~iAk~av~lsP-~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVELSP-SEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 66666666666655321 233366666666666666666665555543
No 142
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.10 E-value=6.7e-06 Score=47.83 Aligned_cols=33 Identities=33% Similarity=0.531 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 009556 428 VMLNVLINAFGVAGKYKEALSVYHLMKDIGISP 460 (532)
Q Consensus 428 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 460 (532)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 355556666666666666666666665555554
No 143
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.01 E-value=0.024 Score=57.55 Aligned_cols=398 Identities=15% Similarity=0.148 Sum_probs=233.0
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCCh
Q 009556 86 YCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEA--LASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLL 163 (532)
Q Consensus 86 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~--~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 163 (532)
.....+++.+|++...++.++ .||.. |..++.+ +.+.|+.++|..+++.....+. .|..|...+-..|.+.|+.
T Consensus 18 d~ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhh
Confidence 445779999999999998877 45543 4445554 4588999999999988876653 4889999999999999999
Q ss_pred hHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCC-C---------h
Q 009556 164 GLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNG-M---------W 233 (532)
Q Consensus 164 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~---------~ 233 (532)
++|..+|++.... .|+......+..+|.+.+.+.+-.+.--+|.+. ++-+.+.+=++++.....- . .
T Consensus 94 d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l 170 (932)
T KOG2053|consen 94 DEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILL 170 (932)
T ss_pred hHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhH
Confidence 9999999999875 366777777888888888876555444444432 2224555545555444321 1 2
Q ss_pred HHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhccCCHHHHHHHHH-HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009556 234 KKAVGIVEEIREMG-LSLDRQIYNSIIDTFGKYGELVEALEVFE-KMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFT 311 (532)
Q Consensus 234 ~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 311 (532)
.-|.+.++.+.+.+ -.-+..-.-.-...+-..|++++|.+++. ...+.-..-+...-+.-+..+...+++.+..++-.
T Consensus 171 ~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~ 250 (932)
T KOG2053|consen 171 ALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSS 250 (932)
T ss_pred HHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHH
Confidence 34556666666554 22222222223344567889999999994 44444333344555566778888999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHc----------------cCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHh---cCC
Q 009556 312 QMQEQGFYPDPKIFITIISCLGE----------------LGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQ---YGR 372 (532)
Q Consensus 312 ~m~~~~~~~~~~~~~~ll~~~~~----------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~ 372 (532)
++...|.. | |...++.+.+ .+..+...+...+..... ....|-+-+.++.+ -|+
T Consensus 251 ~Ll~k~~D-d---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd 323 (932)
T KOG2053|consen 251 RLLEKGND-D---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYKLIGD 323 (932)
T ss_pred HHHHhCCc-c---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcccCC
Confidence 99987633 2 3333332211 112333333333333221 12223333444443 466
Q ss_pred cccHHHHHHHHHHcCCCC----CHHHH---------HHHHHHHHhc------------------------CC-----HHH
Q 009556 373 FRDPEECIAALKLEGLQP----SGSMF---------CILANAYAQQ------------------------GL-----CEQ 410 (532)
Q Consensus 373 ~~~a~~~~~~~~~~~~~~----~~~~~---------~~li~~~~~~------------------------g~-----~~~ 410 (532)
.+++...|- .+-|-.| |...| ..++..+... |. .+.
T Consensus 324 ~ee~~~~y~--~kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~ 401 (932)
T KOG2053|consen 324 SEEMLSYYF--KKFGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADS 401 (932)
T ss_pred hHHHHHHHH--HHhCCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHH
Confidence 666544432 2333344 22222 1222222211 11 111
Q ss_pred HHHHHHHhc---cCC------CCCCH---------HHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCCCHHHHHHHH
Q 009556 411 TVKVLQLME---PEG------IEPNL---------VMLNVLINAFGVAGKYKE---ALSVYHLMKDIGISPDLVTYSTLM 469 (532)
Q Consensus 411 A~~~~~~m~---~~~------~~p~~---------~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~p~~~~~~~l~ 469 (532)
-..++++.. +.| +-|.. -+-+.|++.|.+.++... |+-+++.-.... +-|..+--.++
T Consensus 402 i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLi 480 (932)
T KOG2053|consen 402 ILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLI 480 (932)
T ss_pred HHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHH
Confidence 222222111 111 12222 134678888888887764 333344333321 22455556788
Q ss_pred HHHHhcCCcChHHHHHHHHHhCCCCCCHHHH
Q 009556 470 KAFIRAKKFHKVPEIYKQMESSGCTPDRKAR 500 (532)
Q Consensus 470 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 500 (532)
+.|.-.|-+..|.++|+.|--..+.-|...+
T Consensus 481 riY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh 511 (932)
T KOG2053|consen 481 RIYSYLGAFPDAYELYKTLDIKNIQTDTLGH 511 (932)
T ss_pred HHHHHhcCChhHHHHHHhcchHHhhhccchH
Confidence 9999999999999999988765565554433
No 144
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.98 E-value=0.00037 Score=65.89 Aligned_cols=123 Identities=20% Similarity=0.222 Sum_probs=78.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 009556 186 EILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKY 265 (532)
Q Consensus 186 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 265 (532)
..|+..+...++++.|.++|+++.+.. |+ ....+.+.+...++-.+|.+++.+..+.. +.+......-...+.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 344555555666777777777776653 22 33445566666666667777776666543 33555555556667777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009556 266 GELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQ 314 (532)
Q Consensus 266 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 314 (532)
++++.|+++.+++.+... -+..+|..|..+|.+.|+++.|+..++.+.
T Consensus 248 ~~~~lAL~iAk~av~lsP-~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSP-SEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 777777777777776422 144577777777777777777777776654
No 145
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.98 E-value=9.5e-06 Score=45.98 Aligned_cols=31 Identities=32% Similarity=0.672 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 009556 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGF 108 (532)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 108 (532)
++||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3678888888888888888888888877653
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.98 E-value=0.00074 Score=55.03 Aligned_cols=125 Identities=22% Similarity=0.181 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC---HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh--HhHHHH
Q 009556 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPS---SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKL--RFYNIL 153 (532)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~--~~~~~l 153 (532)
.|..++..+ ..++...+...++.+.... +.+ ....-.+...+...|++++|...|+.+......++. .....|
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 455555555 3667777776677766653 222 122333445666677777777777777665422221 223345
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 009556 154 LRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINE 207 (532)
Q Consensus 154 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 207 (532)
...+...|++++|+..++...... .....+....+.|.+.|+.++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 566666667777766665533221 2334455566666666666666666654
No 147
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.93 E-value=0.00023 Score=67.61 Aligned_cols=124 Identities=15% Similarity=0.049 Sum_probs=102.2
Q ss_pred CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHH
Q 009556 107 GFHPSSISYASLIEALASVGRTLEADAIFQEMVCF--GFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQET 184 (532)
Q Consensus 107 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 184 (532)
+.+.+......+++.+....+.+.+..++.+.... ....-..|..++++.|.+.|..+.++++++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34667777888888888888889999988888754 2223345667999999999999999999999888999999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcC
Q 009556 185 YEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDN 230 (532)
Q Consensus 185 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 230 (532)
+|.||+.+.+.|++..|.++...|...+.-.+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999988777777778877777776665
No 148
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.92 E-value=0.00081 Score=54.81 Aligned_cols=51 Identities=25% Similarity=0.369 Sum_probs=20.2
Q ss_pred HHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009556 399 ANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYH 451 (532)
Q Consensus 399 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 451 (532)
...+...|++++|+..++..... ......+......|...|++++|...|+
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 33444444444444444332221 1122233334444444444444444443
No 149
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.88 E-value=0.00023 Score=52.72 Aligned_cols=79 Identities=22% Similarity=0.370 Sum_probs=56.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCHhHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCChHhHH
Q 009556 81 NKSIQYCCKLGDIDEAMALLAQMQALGF-HPSSISYASLIEALASVG--------RTLEADAIFQEMVCFGFNPKLRFYN 151 (532)
Q Consensus 81 ~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~~--------~~~~A~~~~~~~~~~g~~~~~~~~~ 151 (532)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|+.|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3455666677888888888888888888 888888888888877653 2334566666676666677777777
Q ss_pred HHHHHHHh
Q 009556 152 ILLRGFLK 159 (532)
Q Consensus 152 ~li~~~~~ 159 (532)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 66665543
No 150
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.87 E-value=0.0002 Score=67.95 Aligned_cols=124 Identities=11% Similarity=0.020 Sum_probs=76.3
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc--CCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHH
Q 009556 317 GFYPDPKIFITIISCLGELGKWDVIKKNFENMKDR--GHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSM 394 (532)
Q Consensus 317 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 394 (532)
+.+.+...+..++..+....+.+.+..++-+.... ....-+.+..++|+.|.+.|..+.+.++++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34556666666777776666777777776666544 1222233445666777777766777766666666666677777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 009556 395 FCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVA 440 (532)
Q Consensus 395 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 440 (532)
+|.|++.+.+.|++..|.++..+|...+...+..|+.--+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777777777777666666665555444555554444444443
No 151
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.86 E-value=0.00034 Score=51.96 Aligned_cols=94 Identities=19% Similarity=0.165 Sum_probs=63.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHh
Q 009556 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLK 159 (532)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 159 (532)
|..+...+...|++++|+..+++..+.. +.+...+..+...+...+++++|.+.++...+.. +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 4556666777788888888887776653 3344566667777777777777877777776654 3344566666677777
Q ss_pred cCChhHHHHHHHHHHH
Q 009556 160 KGLLGLGSRLLMVMED 175 (532)
Q Consensus 160 ~g~~~~A~~~~~~m~~ 175 (532)
.|+.+.|...+....+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 7777777777666554
No 152
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.86 E-value=0.029 Score=55.35 Aligned_cols=350 Identities=13% Similarity=0.116 Sum_probs=187.7
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHH----------HHHHhcCChhHHHHHHHHHHHcCC
Q 009556 109 HPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILL----------RGFLKKGLLGLGSRLLMVMEDMGI 178 (532)
Q Consensus 109 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li----------~~~~~~g~~~~A~~~~~~m~~~~~ 178 (532)
.|.+..|..+.......-.++-|...|-+.... +.+....-|- ..-+--|++++|.++|-++.+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-
Confidence 578888988888877777778887777665432 1111111111 11122488888888887776632
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCc----CHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHH
Q 009556 179 CRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQL----NSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQI 254 (532)
Q Consensus 179 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 254 (532)
..+..+.+.|++-...++++. .|-.. -...++.+...++....|++|.+.|......
T Consensus 765 --------LAielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-------- 825 (1189)
T KOG2041|consen 765 --------LAIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-------- 825 (1189)
T ss_pred --------hhHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--------
Confidence 245566667777666655543 11111 2356777777777777777777777654321
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 009556 255 YNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGE 334 (532)
Q Consensus 255 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 334 (532)
...+.++.+..++++-+.+-..+.+ +....-.+...+.+.|.-++|.+.+-+-- .| ...+..|..
T Consensus 826 -e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~ 890 (1189)
T KOG2041|consen 826 -ENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVE 890 (1189)
T ss_pred -HhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHH
Confidence 2245555555555555555555443 44445566677777777777776654321 11 234556666
Q ss_pred cCCHHHHHHHHHHHHhcCCC-----------CCHhHHHHHHHHHHhcCCcccHHHHHHHHHHc----CCCCCHH----HH
Q 009556 335 LGKWDVIKKNFENMKDRGHG-----------KIGAIYAILVDIYGQYGRFRDPEECIAALKLE----GLQPSGS----MF 395 (532)
Q Consensus 335 ~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~----~~ 395 (532)
.++|.+|.++-+...-..+. .+.. ...-|..+.+.|++-+|-+++.+|.+. +.++-.. ..
T Consensus 891 LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~-~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL 969 (1189)
T KOG2041|consen 891 LNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADAN-HMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVL 969 (1189)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcc-hHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHH
Confidence 66666666554432110000 0000 112345566677777777777666432 2222111 11
Q ss_pred HHHH-HH----------HHhcCCHHHHHHHHHHhccC---CC----C--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009556 396 CILA-NA----------YAQQGLCEQTVKVLQLMEPE---GI----E--PNLVMLNVLINAFGVAGKYKEALSVYHLMKD 455 (532)
Q Consensus 396 ~~li-~~----------~~~~g~~~~A~~~~~~m~~~---~~----~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 455 (532)
.+++ .- --+.|..++|..+++.-... .+ - .....|-.|.+-....|.++.|.+.--.+.+
T Consensus 970 ~AlLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~D 1049 (1189)
T KOG2041|consen 970 GALLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSD 1049 (1189)
T ss_pred HHHHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhcc
Confidence 1111 11 11235555555544432211 00 0 1122333444445567888888775444433
Q ss_pred C-CCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCH
Q 009556 456 I-GISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDR 497 (532)
Q Consensus 456 ~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 497 (532)
. .+-|....|..|.-+.+....+...-+.|-++....--|+.
T Consensus 1050 YEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~~e~l~~a 1092 (1189)
T KOG2041|consen 1050 YEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEAFEELDDA 1092 (1189)
T ss_pred HhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhCCHH
Confidence 2 35566777877777777777777777777777654444443
No 153
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.86 E-value=0.036 Score=54.67 Aligned_cols=120 Identities=11% Similarity=-0.013 Sum_probs=68.9
Q ss_pred CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHH----------HHHHhcCCHHHHHHHHHHHHHCC
Q 009556 73 EEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLI----------EALASVGRTLEADAIFQEMVCFG 142 (532)
Q Consensus 73 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li----------~~~~~~~~~~~A~~~~~~~~~~g 142 (532)
..|.+..|..+.......-.++.|...|-+...- +.......+- ..-+--|++++|.++|-++-++.
T Consensus 688 dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD 764 (1189)
T KOG2041|consen 688 DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD 764 (1189)
T ss_pred cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh
Confidence 4577888988888777778888888877665432 2221111111 12223588999999998877543
Q ss_pred CCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCc----CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 009556 143 FNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICR----NQETYEILLDYHVNAGRLDDTWLIINE 207 (532)
Q Consensus 143 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~ 207 (532)
..|..+.+.||+-...++++. -|-.. -...|+.+...+.....+++|.+.|..
T Consensus 765 ---------LAielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 765 ---------LAIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred ---------hhHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 234555666666555554432 11111 123556666666665566666555544
No 154
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.78 E-value=2.8e-05 Score=44.01 Aligned_cols=29 Identities=34% Similarity=0.654 Sum_probs=14.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009556 429 MLNVLINAFGVAGKYKEALSVYHLMKDIG 457 (532)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 457 (532)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 44555555555555555555555554443
No 155
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.77 E-value=0.00042 Score=51.38 Aligned_cols=78 Identities=21% Similarity=0.236 Sum_probs=52.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCChHhHHHHHHHHHhcCC--------hhHHHHHHHHHHHcCCCcCHHHHH
Q 009556 116 ASLIEALASVGRTLEADAIFQEMVCFGF-NPKLRFYNILLRGFLKKGL--------LGLGSRLLMVMEDMGICRNQETYE 186 (532)
Q Consensus 116 ~~li~~~~~~~~~~~A~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~--------~~~A~~~~~~m~~~~~~~~~~~~~ 186 (532)
...|..+...+++...-.+|+.+++.|+ -|++.+|+.++.+.++..- +-..+.+|+.|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4456666777888888888888888888 7888888888888776432 223445555555555555555555
Q ss_pred HHHHHHH
Q 009556 187 ILLDYHV 193 (532)
Q Consensus 187 ~li~~~~ 193 (532)
.++..+.
T Consensus 109 ivl~~Ll 115 (120)
T PF08579_consen 109 IVLGSLL 115 (120)
T ss_pred HHHHHHH
Confidence 5555443
No 156
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.68 E-value=0.0022 Score=50.15 Aligned_cols=97 Identities=16% Similarity=0.022 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CChHhHHH
Q 009556 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPS----SISYASLIEALASVGRTLEADAIFQEMVCFGFN--PKLRFYNI 152 (532)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~--~~~~~~~~ 152 (532)
++-.+...+.+.|++++|.+.|+.+.+.. |+ ...+..+..++.+.|++++|.+.|+.+...... .....+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 34556666777788888888887776652 22 345556777777777777777777777654211 12345666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcC
Q 009556 153 LLRGFLKKGLLGLGSRLLMVMEDMG 177 (532)
Q Consensus 153 li~~~~~~g~~~~A~~~~~~m~~~~ 177 (532)
+..++.+.|+.++|.+.++++.+..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHC
Confidence 6667777777777777777776653
No 157
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.68 E-value=0.036 Score=49.40 Aligned_cols=60 Identities=17% Similarity=0.074 Sum_probs=43.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHH---HHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009556 82 KSIQYCCKLGDIDEAMALLAQMQALGFHPSSISY---ASLIEALASVGRTLEADAIFQEMVCFG 142 (532)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~---~~li~~~~~~~~~~~A~~~~~~~~~~g 142 (532)
.....+.+.|++++|++.|+++.... +-+.... -.++.++.+.+++++|...+++..+..
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 34555567899999999999988763 2223332 345677788899999999998888753
No 158
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.67 E-value=0.00096 Score=49.38 Aligned_cols=94 Identities=13% Similarity=0.054 Sum_probs=55.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 009556 115 YASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVN 194 (532)
Q Consensus 115 ~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 194 (532)
+..+...+...|++++|...++...+.. +.+...+..+...+...|+++.|.+.|+....... .+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHH
Confidence 4445556666677777777777666543 23335555666666666666666666666655432 233455556666666
Q ss_pred cCChHHHHHHHHHHHH
Q 009556 195 AGRLDDTWLIINEMRS 210 (532)
Q Consensus 195 ~~~~~~a~~~~~~m~~ 210 (532)
.|+.++|...+....+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 6666666666655543
No 159
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.66 E-value=0.0016 Score=61.85 Aligned_cols=93 Identities=16% Similarity=0.030 Sum_probs=75.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCC
Q 009556 83 SIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGL 162 (532)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 162 (532)
-...+...|++++|++.|+++.+.. +.+...|..+..++...|++++|+..++++.+.. +.+...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 3455677899999999999988875 5567788888888889999999999999888765 4567778888888888899
Q ss_pred hhHHHHHHHHHHHcC
Q 009556 163 LGLGSRLLMVMEDMG 177 (532)
Q Consensus 163 ~~~A~~~~~~m~~~~ 177 (532)
+++|...|++..+..
T Consensus 86 ~~eA~~~~~~al~l~ 100 (356)
T PLN03088 86 YQTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999888888754
No 160
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.64 E-value=0.0013 Score=55.44 Aligned_cols=95 Identities=23% Similarity=0.366 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHHHhc-----CCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh----------------cCCHHHHHHH
Q 009556 391 SGSMFCILANAYAQQ-----GLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGV----------------AGKYKEALSV 449 (532)
Q Consensus 391 ~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----------------~g~~~~A~~~ 449 (532)
+..+|..+++.|.+. |..+-....+..|.+.|+.-|..+|+.|++.+=+ -.+-+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 444455555554432 4555555556666666666666666666665433 1235668899
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHH
Q 009556 450 YHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQM 488 (532)
Q Consensus 450 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 488 (532)
+++|.+.|+.||..++..|+..+.+.+ .+.+-+.+|
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s---~p~~K~~rm 161 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKS---HPMKKYRRM 161 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhcccc---HHHHHHHHH
Confidence 999999999999999999999985544 455555544
No 161
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.63 E-value=0.0032 Score=53.04 Aligned_cols=92 Identities=15% Similarity=0.070 Sum_probs=68.8
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHH
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPS--SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNIL 153 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~l 153 (532)
....+..+...+.+.|++++|+..|++..+.+..+. ...+..+...+.+.|++++|...+++..+.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 445677777888889999999999999886532222 4578888889999999999999999988754 3456667777
Q ss_pred HHHHHhcCChhHHHH
Q 009556 154 LRGFLKKGLLGLGSR 168 (532)
Q Consensus 154 i~~~~~~g~~~~A~~ 168 (532)
...+...|+...+..
T Consensus 113 g~~~~~~g~~~~a~~ 127 (172)
T PRK02603 113 AVIYHKRGEKAEEAG 127 (172)
T ss_pred HHHHHHcCChHhHhh
Confidence 777877777555443
No 162
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.63 E-value=0.00014 Score=52.78 Aligned_cols=81 Identities=20% Similarity=0.225 Sum_probs=49.1
Q ss_pred cCChHHHHHHHHHHHHcCCC-CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHH
Q 009556 90 LGDIDEAMALLAQMQALGFH-PSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSR 168 (532)
Q Consensus 90 ~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 168 (532)
.|+++.|+.+++++.+.... ++...+..+..++.+.|++++|.++++. .+.+ +.+....-.+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 46777788877777766421 1334455567777777777777777776 3222 1223444455677777777777777
Q ss_pred HHHH
Q 009556 169 LLMV 172 (532)
Q Consensus 169 ~~~~ 172 (532)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7664
No 163
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.58 E-value=0.002 Score=61.17 Aligned_cols=89 Identities=9% Similarity=-0.136 Sum_probs=50.1
Q ss_pred HHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHH
Q 009556 365 DIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYK 444 (532)
Q Consensus 365 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 444 (532)
..+...|++++|++.|+++.+.+ +.+...|..+..+|...|++++|+..++++.+.. +.+...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 34445566666666666665543 2244455555556666666666666666655542 234455555555666666666
Q ss_pred HHHHHHHHHHH
Q 009556 445 EALSVYHLMKD 455 (532)
Q Consensus 445 ~A~~~~~~m~~ 455 (532)
+|...|++..+
T Consensus 88 eA~~~~~~al~ 98 (356)
T PLN03088 88 TAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHH
Confidence 66666666555
No 164
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.57 E-value=0.0016 Score=59.55 Aligned_cols=131 Identities=10% Similarity=0.111 Sum_probs=76.2
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHH
Q 009556 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALA-SVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (532)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~-~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (532)
..|-.+++..-+.+..+.|..+|.+..+.+ ..+...|......-. ..++.+.|..+|+...+. ++.+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356667777777777777777777776442 223333433333322 245555577777777654 34566666677777
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCcC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 009556 157 FLKKGLLGLGSRLLMVMEDMGICRN---QETYEILLDYHVNAGRLDDTWLIINEMRSK 211 (532)
Q Consensus 157 ~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 211 (532)
+.+.|+.+.|..+|++.... +.++ ...|...+..=.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777776654 2122 236666666666666666666666666553
No 165
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.57 E-value=0.0022 Score=51.44 Aligned_cols=92 Identities=10% Similarity=-0.082 Sum_probs=67.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcC
Q 009556 82 KSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKG 161 (532)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 161 (532)
.+...+...|++++|..+|+.+...+ +-+..-|-.|.-++-..|++++|++.|....... +.|+..+-.+..++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcC
Confidence 34445567788888888888877664 4455666777777777888888888888877766 466777777778888888
Q ss_pred ChhHHHHHHHHHHH
Q 009556 162 LLGLGSRLLMVMED 175 (532)
Q Consensus 162 ~~~~A~~~~~~m~~ 175 (532)
+.+.|.+.|+....
T Consensus 118 ~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 118 NVCYAIKALKAVVR 131 (157)
T ss_pred CHHHHHHHHHHHHH
Confidence 88888887776665
No 166
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.53 E-value=0.12 Score=51.68 Aligned_cols=340 Identities=14% Similarity=0.101 Sum_probs=181.3
Q ss_pred HcCCCCCHhHHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCCh---hHHHHHHHHHHHc
Q 009556 105 ALGFHPSSISYA-----SLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLL---GLGSRLLMVMEDM 176 (532)
Q Consensus 105 ~~~~~~~~~~~~-----~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~ 176 (532)
..|++.+..-|. .+|.-+...+.+..|+++-..+...-... ..+|.....-+.+..+. +.+..+-+++...
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 345555544443 35666667778888888777765321111 56666666666665322 2222222222221
Q ss_pred CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC----cCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH
Q 009556 177 GICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQ----LNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDR 252 (532)
Q Consensus 177 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 252 (532)
. ....+|..+.......|+++-|..+++.=...+.. .+..-+...+.-+.+.|+.+....++-.+... .+.
T Consensus 504 -~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~ 578 (829)
T KOG2280|consen 504 -L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNR 578 (829)
T ss_pred -C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHH
Confidence 2 34456777777777788888887776542221100 01222333444455555555555555544432 111
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH--HHH----HCCCCCCHHHHH
Q 009556 253 QIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFT--QMQ----EQGFYPDPKIFI 326 (532)
Q Consensus 253 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~--~m~----~~~~~~~~~~~~ 326 (532)
..+... ..+...|..+|.+..+.. |.. .+-..| ..++-..++.-|. ... ..|..|+..
T Consensus 579 s~l~~~------l~~~p~a~~lY~~~~r~~---~~~---~l~d~y-~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk--- 642 (829)
T KOG2280|consen 579 SSLFMT------LRNQPLALSLYRQFMRHQ---DRA---TLYDFY-NQDDNHQALASFHLQASYAAETIEGRIPALK--- 642 (829)
T ss_pred HHHHHH------HHhchhhhHHHHHHHHhh---chh---hhhhhh-hcccchhhhhhhhhhhhhhhhhhcccchhHH---
Confidence 111111 123345555555544321 111 111122 2222222222111 100 113333332
Q ss_pred HHHHHHHccCCHH---HH-------HHHHHHHH-hcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHH
Q 009556 327 TIISCLGELGKWD---VI-------KKNFENMK-DRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMF 395 (532)
Q Consensus 327 ~ll~~~~~~~~~~---~a-------~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 395 (532)
.....+.+..... ++ .++.+.+. +.+......+.+--+.-+...|+..+|.++-.+++ .||...|
T Consensus 643 ~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~ 718 (829)
T KOG2280|consen 643 TAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLW 718 (829)
T ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhH
Confidence 2333344333211 11 11122221 12323344455556666777899999988877765 6788888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009556 396 CILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRA 475 (532)
Q Consensus 396 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 475 (532)
-.-+.+++..+++++-+++-+.+.. ..-|.....+|.+.|+.++|.+++-+.... .-...+|.+.
T Consensus 719 wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~ 783 (829)
T KOG2280|consen 719 WLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGNKDEAKKYIPRVGGL---------QEKVKAYLRV 783 (829)
T ss_pred HHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhcccHHHHhhhhhccCCh---------HHHHHHHHHh
Confidence 8889999999999988887776652 345777889999999999999988765431 1466778888
Q ss_pred CCcChHHHHH
Q 009556 476 KKFHKVPEIY 485 (532)
Q Consensus 476 g~~~~a~~~~ 485 (532)
|++.+|.++-
T Consensus 784 ~~~~eAad~A 793 (829)
T KOG2280|consen 784 GDVKEAADLA 793 (829)
T ss_pred ccHHHHHHHH
Confidence 8888877654
No 167
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.51 E-value=0.0052 Score=47.95 Aligned_cols=98 Identities=9% Similarity=-0.001 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--cCHHHHHHHH
Q 009556 114 SYASLIEALASVGRTLEADAIFQEMVCFGFN--PKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGIC--RNQETYEILL 189 (532)
Q Consensus 114 ~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li 189 (532)
++..+...+.+.|++++|.+.|..+.+.... .....+..+...+.+.|+++.|.+.|+.+...... .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3445556666667777777777666653210 11234455666666666666666666666553211 1133455555
Q ss_pred HHHHhcCChHHHHHHHHHHHHC
Q 009556 190 DYHVNAGRLDDTWLIINEMRSK 211 (532)
Q Consensus 190 ~~~~~~~~~~~a~~~~~~m~~~ 211 (532)
..+.+.|+.++|...++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 5666666666666666666554
No 168
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.51 E-value=0.003 Score=53.20 Aligned_cols=51 Identities=22% Similarity=0.317 Sum_probs=36.6
Q ss_pred CCCHhHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHh
Q 009556 109 HPSSISYASLIEALAS-----VGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLK 159 (532)
Q Consensus 109 ~~~~~~~~~li~~~~~-----~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 159 (532)
..+-.+|..+++.+.+ .|..+-....+..|.+.|+.-|..+|+.|++.+=+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK 99 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK 99 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence 3456666666666653 36667777777888888888888888888887754
No 169
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.50 E-value=0.0019 Score=56.98 Aligned_cols=96 Identities=16% Similarity=0.152 Sum_probs=59.4
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHH
Q 009556 87 CCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLG 166 (532)
Q Consensus 87 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 166 (532)
+.+.++|++|++.|.+.++.. +.|.+-|..-..+|++.|.++.|++-.+..+... +-...+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence 455666777777777766653 4556666666667777777777766666666543 22345666666666666666666
Q ss_pred HHHHHHHHHcCCCcCHHHHH
Q 009556 167 SRLLMVMEDMGICRNQETYE 186 (532)
Q Consensus 167 ~~~~~~m~~~~~~~~~~~~~ 186 (532)
.+.|++..+ +.|+-.+|-
T Consensus 169 ~~aykKaLe--ldP~Ne~~K 186 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYK 186 (304)
T ss_pred HHHHHhhhc--cCCCcHHHH
Confidence 666666655 345544443
No 170
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.49 E-value=0.0032 Score=57.59 Aligned_cols=131 Identities=8% Similarity=0.061 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHh-cCChhHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 009556 113 ISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLK-KGLLGLGSRLLMVMEDMGICRNQETYEILLDY 191 (532)
Q Consensus 113 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 191 (532)
.+|..+++..-+.+..+.|..+|.+.++.+ ..+..+|......-.+ .++.+.|.++|+...+. ...+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356666777767767777777777776433 2233444433333222 45555577777776654 33456666777777
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCcCH---HhHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 009556 192 HVNAGRLDDTWLIINEMRSKGFQLNS---FVYGKVIGLYRDNGMWKKAVGIVEEIREM 246 (532)
Q Consensus 192 ~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 246 (532)
+.+.++.+.|..+|++.... +.++. ..|...+..=.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777776554 22111 25555555555555555555555555543
No 171
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.48 E-value=0.0053 Score=51.50 Aligned_cols=95 Identities=13% Similarity=0.011 Sum_probs=66.5
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHH
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHP--SSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNIL 153 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~l 153 (532)
....|..+...+...|++++|+..|++.......+ ...++..+...+...|++++|+..++...+.. +.....+..+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~l 112 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence 45567777888888899999999999887653222 23478888888889999999999998888653 3344556666
Q ss_pred HHHHH-------hcCChhHHHHHHH
Q 009556 154 LRGFL-------KKGLLGLGSRLLM 171 (532)
Q Consensus 154 i~~~~-------~~g~~~~A~~~~~ 171 (532)
...+. +.|+++.|...++
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHH
Confidence 66665 5566554444443
No 172
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.45 E-value=0.00025 Score=51.45 Aligned_cols=79 Identities=18% Similarity=0.249 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHhccCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHH
Q 009556 406 GLCEQTVKVLQLMEPEGIE-PNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEI 484 (532)
Q Consensus 406 g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 484 (532)
|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|..++++ .+.+. .+......+..++.+.|++++|++.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4444455544444443210 1222333344455555555555555544 11111 1112222334444555555555554
Q ss_pred HH
Q 009556 485 YK 486 (532)
Q Consensus 485 ~~ 486 (532)
++
T Consensus 81 l~ 82 (84)
T PF12895_consen 81 LE 82 (84)
T ss_dssp HH
T ss_pred Hh
Confidence 44
No 173
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.44 E-value=0.0079 Score=50.65 Aligned_cols=82 Identities=12% Similarity=0.074 Sum_probs=35.8
Q ss_pred HHHHHHHHHhcCCcccHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHH
Q 009556 360 YAILVDIYGQYGRFRDPEECIAALKLEGLQPS--GSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAF 437 (532)
Q Consensus 360 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 437 (532)
+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+.. +-+...+..+..++
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 116 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 33344444444444444444444443221111 2334444555555555555555555554431 12333344444444
Q ss_pred HhcCC
Q 009556 438 GVAGK 442 (532)
Q Consensus 438 ~~~g~ 442 (532)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 44444
No 174
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.41 E-value=0.018 Score=52.99 Aligned_cols=174 Identities=15% Similarity=0.168 Sum_probs=86.1
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCC---CC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHH
Q 009556 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFH---PS--SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYN 151 (532)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~~--~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~ 151 (532)
...|+.....|-..|++++|.+.|.+....... +. ...|......+ +..++++|.+.+++..
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~------------ 101 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKAI------------ 101 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHH------------
Confidence 356788888888889999999988876433111 11 12233333333 3336666666666554
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc-CChHHHHHHHHHHHH----CCCCc-CHHhHHHHHH
Q 009556 152 ILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNA-GRLDDTWLIINEMRS----KGFQL-NSFVYGKVIG 225 (532)
Q Consensus 152 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~----~~~~~-~~~~~~~ll~ 225 (532)
..|...|++..|-+++..+- ..|... |++++|.+.|++..+ .|..- -...+..+..
T Consensus 102 ---~~y~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 102 ---EIYREAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAAD 163 (282)
T ss_dssp ---HHHHHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ---HHHHhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHH
Confidence 44555555555544443332 233333 455555555554422 12100 1233445555
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCC-----CHH-HHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 009556 226 LYRDNGMWKKAVGIVEEIREMGLSL-----DRQ-IYNSIIDTFGKYGELVEALEVFEKMQQE 281 (532)
Q Consensus 226 ~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 281 (532)
.+.+.|++++|.++|+++....... +.. .+-..+-.+...||...|.+.|++....
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6666666666666666665432211 111 1222222444456777777777766543
No 175
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.40 E-value=0.0067 Score=50.87 Aligned_cols=114 Identities=9% Similarity=-0.028 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHH-HcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--ChHhHHHHHHHHHhcCChhHHHHH
Q 009556 93 IDEAMALLAQMQ-ALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNP--KLRFYNILLRGFLKKGLLGLGSRL 169 (532)
Q Consensus 93 ~~~A~~~~~~m~-~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~ 169 (532)
+..+...+..+. ..+.......|..+...+...|++++|...|+........+ ...++..+...+...|++++|...
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444444444443 22222234567777888888999999999999987653222 235788888999999999999999
Q ss_pred HHHHHHcCCCcCHHHHHHHHHHHH-------hcCChHHHHHHHHH
Q 009556 170 LMVMEDMGICRNQETYEILLDYHV-------NAGRLDDTWLIINE 207 (532)
Q Consensus 170 ~~~m~~~~~~~~~~~~~~li~~~~-------~~~~~~~a~~~~~~ 207 (532)
++....... ....++..+...+. +.|+++.|...+++
T Consensus 95 ~~~Al~~~~-~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 95 YFQALERNP-FLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHhCc-CcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 998887532 33455666666666 66666655544443
No 176
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.39 E-value=0.09 Score=46.89 Aligned_cols=74 Identities=9% Similarity=-0.060 Sum_probs=40.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhH---HHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 009556 117 SLIEALASVGRTLEADAIFQEMVCFGFNPKLRFY---NILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDY 191 (532)
Q Consensus 117 ~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 191 (532)
.....+...|++++|.+.|+.+...- +-+.... -.++.++.+.+++++|...+++..+..+......|...+.+
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g 113 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRG 113 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHH
Confidence 34444556677777777777776643 1112222 23456666777777777777777665433223333333333
No 177
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.37 E-value=0.038 Score=50.79 Aligned_cols=113 Identities=19% Similarity=0.333 Sum_probs=58.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcC-CChHHHHHHHHHHHHc----CCC-CCHHHHHHHHHH
Q 009556 188 LLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDN-GMWKKAVGIVEEIREM----GLS-LDRQIYNSIIDT 261 (532)
Q Consensus 188 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~ 261 (532)
.+..|...|++..|-+++.++ ...|... |++++|.+.|++..+. +.. .-..++..+...
T Consensus 100 A~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence 344556666666665555443 3345555 7788888777776542 100 012344555666
Q ss_pred HhccCCHHHHHHHHHHHHhCCCC-----CCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009556 262 FGKYGELVEALEVFEKMQQESIR-----PDIV-TWNSLIRWHCKAGDVAKALELFTQMQE 315 (532)
Q Consensus 262 ~~~~g~~~~A~~~~~~m~~~~~~-----p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~ 315 (532)
+.+.|++++|.++|++....... .+.. .+-..+-++...||+..|.+.+++...
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 67777777777777766553211 1111 122233345556677777777766653
No 178
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.34 E-value=0.00095 Score=46.08 Aligned_cols=61 Identities=23% Similarity=0.278 Sum_probs=41.6
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHH
Q 009556 88 CKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYN 151 (532)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~ 151 (532)
.+.|++++|+++|+++.... +.+...+..+..+|.+.|++++|.++++.+.... |+...|.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~--~~~~~~~ 62 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD--PDNPEYQ 62 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG--TTHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCHHHHH
Confidence 45677888888888877664 4466677777778888888888888887777653 4433333
No 179
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.31 E-value=0.0067 Score=48.75 Aligned_cols=95 Identities=8% Similarity=-0.021 Sum_probs=61.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 009556 115 YASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVN 194 (532)
Q Consensus 115 ~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 194 (532)
.-.+...+...|++++|..+|+.+.... +.+..-|-.|.-++-..|++++|+..|.......+ -|...+-.+..++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHH
Confidence 3344555566777777777777776654 34555666666666677777777777777766553 455666666667777
Q ss_pred cCChHHHHHHHHHHHHC
Q 009556 195 AGRLDDTWLIINEMRSK 211 (532)
Q Consensus 195 ~~~~~~a~~~~~~m~~~ 211 (532)
.|+.+.|.+.|+..+..
T Consensus 116 lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 116 CDNVCYAIKALKAVVRI 132 (157)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 77777777776665543
No 180
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.29 E-value=0.017 Score=57.58 Aligned_cols=70 Identities=17% Similarity=0.151 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCHHH
Q 009556 426 NLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKA 499 (532)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 499 (532)
+...|..+.-.....|++++|...++++.+.+ |+...|..+...+...|+.++|.+.+++... +.|...|
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~pt 488 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGENT 488 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCch
Confidence 33455555444555566666666666666543 4555666666666666666666666666654 4444433
No 181
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.22 E-value=0.037 Score=42.84 Aligned_cols=90 Identities=21% Similarity=0.158 Sum_probs=51.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----hHhHHHHHHHH
Q 009556 84 IQYCCKLGDIDEAMALLAQMQALGFHPS--SISYASLIEALASVGRTLEADAIFQEMVCFGFNPK----LRFYNILLRGF 157 (532)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~~ 157 (532)
...+-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..++++..... |+ ......+.-++
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHH
Confidence 3455566777777777777777664333 2344555666667777777777777766532 22 11222223344
Q ss_pred HhcCChhHHHHHHHHHHH
Q 009556 158 LKKGLLGLGSRLLMVMED 175 (532)
Q Consensus 158 ~~~g~~~~A~~~~~~m~~ 175 (532)
...|+.++|++.+-....
T Consensus 86 ~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 556666666666554443
No 182
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.21 E-value=0.0046 Score=54.65 Aligned_cols=97 Identities=20% Similarity=0.237 Sum_probs=55.1
Q ss_pred HHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009556 367 YGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEA 446 (532)
Q Consensus 367 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 446 (532)
+.+.+++.+|...|.+.++.. +-|.+.|..-..+|.+.|.++.|++-.+...... +--..+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence 345566666666666666543 2345555556666666666666666655555432 12234566666666666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHH
Q 009556 447 LSVYHLMKDIGISPDLVTYST 467 (532)
Q Consensus 447 ~~~~~~m~~~~~~p~~~~~~~ 467 (532)
.+.|++..+ +.|+-.+|..
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~ 187 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKS 187 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHH
Confidence 666666655 3455444443
No 183
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.20 E-value=0.033 Score=55.55 Aligned_cols=137 Identities=13% Similarity=0.047 Sum_probs=94.3
Q ss_pred CCCCHhHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhc--------CChhHHHHHHHHHH
Q 009556 108 FHPSSISYASLIEALASV-----GRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKK--------GLLGLGSRLLMVME 174 (532)
Q Consensus 108 ~~~~~~~~~~li~~~~~~-----~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~m~ 174 (532)
.+.|...|...+++.... ++...|.++|++..+.. +.....|..+..++... .++..+.+..++..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 367788888888775543 23678889999988764 33345555544444322 12334444444433
Q ss_pred Hc-CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcC
Q 009556 175 DM-GICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMG 247 (532)
Q Consensus 175 ~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 247 (532)
.. ..+.+...|..+.-.+...|++++|...+++..... |+...|..+...+...|+.++|.+.+++....+
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 32 122355677777777777899999999999988875 577888888999999999999999999888764
No 184
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.19 E-value=0.1 Score=45.23 Aligned_cols=59 Identities=19% Similarity=0.123 Sum_probs=40.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCC--CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009556 83 SIQYCCKLGDIDEAMALLAQMQALGF--HPSSISYASLIEALASVGRTLEADAIFQEMVCF 141 (532)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 141 (532)
....+.+.|++.+|++.|+.+..... +-.....-.++.++.+.|+++.|...+++..+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44455678889999999988887621 112345566777888888888888888887765
No 185
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.18 E-value=0.098 Score=42.98 Aligned_cols=127 Identities=15% Similarity=0.071 Sum_probs=64.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCC
Q 009556 83 SIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGL 162 (532)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 162 (532)
+..+..+.=|++...+-..+-.+. .|++.--..+..++.+.|+..+|...|++...--+..|....-.+.++....++
T Consensus 62 ~~~a~~q~ldP~R~~Rea~~~~~~--ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~ 139 (251)
T COG4700 62 LLMALQQKLDPERHLREATEELAI--APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQE 139 (251)
T ss_pred HHHHHHHhcChhHHHHHHHHHHhh--chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhcc
Confidence 344444444444443333222222 345544555666666666666666666666543334455555556666666666
Q ss_pred hhHHHHHHHHHHHcCCC-cCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 009556 163 LGLGSRLLMVMEDMGIC-RNQETYEILLDYHVNAGRLDDTWLIINEMRSK 211 (532)
Q Consensus 163 ~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 211 (532)
+..|...++.+-+.... .++.+...+.+.+...|.+.+|..-|+...+.
T Consensus 140 ~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 140 FAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 66666666665543210 12223344445555555555555555555543
No 186
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.03 Score=49.93 Aligned_cols=101 Identities=12% Similarity=0.085 Sum_probs=73.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHH
Q 009556 389 QPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAG---KYKEALSVYHLMKDIGISPDLVTY 465 (532)
Q Consensus 389 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~ 465 (532)
+-|...|-.|...|...|+++.|..-|.+..+.. .+|...+..+..++..+. ...++..+|+++.... +-|+.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 4567778888888888888888888888877653 456666666666655432 3466788888887753 2356666
Q ss_pred HHHHHHHHhcCCcChHHHHHHHHHhC
Q 009556 466 STLMKAFIRAKKFHKVPEIYKQMESS 491 (532)
Q Consensus 466 ~~l~~~~~~~g~~~~a~~~~~~m~~~ 491 (532)
..|...+...|++.+|...|+.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 77777888888888888888888874
No 187
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.12 E-value=0.0025 Score=43.47 Aligned_cols=57 Identities=25% Similarity=0.210 Sum_probs=38.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009556 84 IQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCF 141 (532)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 141 (532)
...+.+.|++++|++.|+++.+.. +-+...+..+..++...|++++|...|+++.+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445667777777777777777664 345666777777777777777777777777654
No 188
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.11 E-value=0.0029 Score=43.74 Aligned_cols=64 Identities=20% Similarity=0.216 Sum_probs=45.1
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVG-RTLEADAIFQEMVC 140 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~~~~ 140 (532)
++..|..+...+.+.|++++|+..|++..+.+ +.+...|..+..++...| ++++|++.++...+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34567777777777777777777777777764 445666777777777777 57777777777664
No 189
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.08 E-value=0.05 Score=42.13 Aligned_cols=93 Identities=20% Similarity=0.069 Sum_probs=55.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--cCHHHHHHHHHHHH
Q 009556 118 LIEALASVGRTLEADAIFQEMVCFGFNPK--LRFYNILLRGFLKKGLLGLGSRLLMVMEDMGIC--RNQETYEILLDYHV 193 (532)
Q Consensus 118 li~~~~~~~~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~ 193 (532)
+..++-..|+.++|+.+|++....|.... ...+-.+.+.+...|++++|..++++....... -+......+.-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34555667778888888888777765443 234555666777777777777777776654211 01122223334556
Q ss_pred hcCChHHHHHHHHHHHH
Q 009556 194 NAGRLDDTWLIINEMRS 210 (532)
Q Consensus 194 ~~~~~~~a~~~~~~m~~ 210 (532)
..|+.++|++.+-....
T Consensus 87 ~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALA 103 (120)
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 66777777766655443
No 190
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.03 E-value=0.0021 Score=44.27 Aligned_cols=51 Identities=18% Similarity=0.241 Sum_probs=27.3
Q ss_pred hcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009556 404 QQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKD 455 (532)
Q Consensus 404 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 455 (532)
..|++++|.++|+.+.... +-+...+..+..+|.+.|++++|.++++++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455556666665555442 22445555555556666666666665555554
No 191
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.13 Score=47.78 Aligned_cols=86 Identities=14% Similarity=0.067 Sum_probs=46.0
Q ss_pred HHhcCCHHHHHHHHHHhccC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH---HHHHHhc
Q 009556 402 YAQQGLCEQTVKVLQLMEPE---GIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTL---MKAFIRA 475 (532)
Q Consensus 402 ~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l---~~~~~~~ 475 (532)
..+.|++..|.+.+.+.+.. .+.|+...|.....+..+.|+..+|+.--++..+. |......+ ..++...
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~l 334 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLAL 334 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHH
Confidence 34566666666666666543 23444555555555566666666666665555442 32221111 2233445
Q ss_pred CCcChHHHHHHHHHhC
Q 009556 476 KKFHKVPEIYKQMESS 491 (532)
Q Consensus 476 g~~~~a~~~~~~m~~~ 491 (532)
++|++|.+-+++..+.
T Consensus 335 e~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 335 EKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 6666666666666553
No 192
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.02 E-value=0.0024 Score=43.57 Aligned_cols=55 Identities=22% Similarity=0.255 Sum_probs=27.1
Q ss_pred HHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009556 400 NAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKD 455 (532)
Q Consensus 400 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 455 (532)
..+...|++++|.+.|++..+.. +-+...+..+..++...|++++|...|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445555555555555555443 22344445555555555555555555555543
No 193
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.01 E-value=0.0096 Score=54.82 Aligned_cols=264 Identities=14% Similarity=0.075 Sum_probs=160.7
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCH----hHHHHHHHHHHhcCCHHHHHHHHHHHH--H--CCCC-CChHhHHHHHHH
Q 009556 86 YCCKLGDIDEAMALLAQMQALGFHPSS----ISYASLIEALASVGRTLEADAIFQEMV--C--FGFN-PKLRFYNILLRG 156 (532)
Q Consensus 86 ~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~~~--~--~g~~-~~~~~~~~li~~ 156 (532)
-+|+.|+...-+.+|+...+.| ..|. .+|..|..+|.-.+++++|++.+..=+ . .|-+ -.......|.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 4799999999999999999987 3343 357777888888999999998764321 1 1100 112222334444
Q ss_pred HHhcCChhHHHHHHHH----HHHcCCC-cCHHHHHHHHHHHHhcCC--------------------hHHHHHHHHHHH--
Q 009556 157 FLKKGLLGLGSRLLMV----MEDMGIC-RNQETYEILLDYHVNAGR--------------------LDDTWLIINEMR-- 209 (532)
Q Consensus 157 ~~~~g~~~~A~~~~~~----m~~~~~~-~~~~~~~~li~~~~~~~~--------------------~~~a~~~~~~m~-- 209 (532)
+--.|.+++|.-.-.+ ..+.|-. .....+-.+...|...|+ ++.|.+.|.+=.
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 5556667766543222 1222110 112234445566654442 223444443321
Q ss_pred --HCCC-CcCHHhHHHHHHHHHcCCChHHHHHHHHHHHH----cCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHh-
Q 009556 210 --SKGF-QLNSFVYGKVIGLYRDNGMWKKAVGIVEEIRE----MGLS-LDRQIYNSIIDTFGKYGELVEALEVFEKMQQ- 280 (532)
Q Consensus 210 --~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~- 280 (532)
+.|- -.--..|..|.+.|.-.|+++.|+..++.-+. .|-. .....+..+.+++.-.|+++.|.+.|+.-..
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 1111 01223566666667778899999887765432 2211 2244677788888889999999998876432
Q ss_pred ---CCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 009556 281 ---ESI-RPDIVTWNSLIRWHCKAGDVAKALELFTQMQE----QG-FYPDPKIFITIISCLGELGKWDVIKKNFENMKD 350 (532)
Q Consensus 281 ---~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 350 (532)
.|- .....+.-+|.+.|.-..++++|+.++.+-.. .+ ..-....+.++..++...|..+.|..+.....+
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 221 12345566788888888899999998877432 11 222456778889999999999999887766543
No 194
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.074 Score=47.49 Aligned_cols=101 Identities=9% Similarity=-0.018 Sum_probs=52.4
Q ss_pred CCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCcCHHhH
Q 009556 144 NPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAG---RLDDTWLIINEMRSKGFQLNSFVY 220 (532)
Q Consensus 144 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~ 220 (532)
+-|...|-.|...|...|+++.|...|....+... +|...+..+..++.... ...++..+|+++...... |..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHH
Confidence 34555566666666666666666666655555422 34444444444333222 234555566665554222 44444
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHc
Q 009556 221 GKVIGLYRDNGMWKKAVGIVEEIREM 246 (532)
Q Consensus 221 ~~ll~~~~~~~~~~~a~~~~~~~~~~ 246 (532)
..+...+...|++.+|...|+.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 44555555666666666666666554
No 195
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.35 Score=45.13 Aligned_cols=282 Identities=11% Similarity=-0.007 Sum_probs=136.4
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHH
Q 009556 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (532)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (532)
.......-..+.+..++.+|+..+....+.. +-+..-|..-...+...+++++|.--.+.-.+.. +-......-.-++
T Consensus 49 Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c 126 (486)
T KOG0550|consen 49 AEEAKEEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQC 126 (486)
T ss_pred HHHHHhhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhh
Confidence 3344455566778888999999999988875 4455566666777777788887776655544321 1112233333344
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CcCHHhHHHHH-HHHHcCCChH
Q 009556 157 FLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGF-QLNSFVYGKVI-GLYRDNGMWK 234 (532)
Q Consensus 157 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll-~~~~~~~~~~ 234 (532)
+...++..+|.+.++.-. .+ ....++..++....... +|.-.++..+- .++...|+++
T Consensus 127 ~~a~~~~i~A~~~~~~~~---------~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~ 186 (486)
T KOG0550|consen 127 HLALSDLIEAEEKLKSKQ---------AY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYD 186 (486)
T ss_pred hhhhHHHHHHHHHhhhhh---------hh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccch
Confidence 444444444444443110 00 01111222222211111 12222222222 2334455566
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHH--HHhccCCHHHHHHHHHHHHhCCCCCCHHH-------------HHHHHHHHHH
Q 009556 235 KAVGIVEEIREMGLSLDRQIYNSIID--TFGKYGELVEALEVFEKMQQESIRPDIVT-------------WNSLIRWHCK 299 (532)
Q Consensus 235 ~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-------------~~~li~~~~~ 299 (532)
+|.++--.+++.+ ....+...++ ++.-.++.+.|...|++....+ |+... |..-.+-..+
T Consensus 187 ~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk 261 (486)
T KOG0550|consen 187 EAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFK 261 (486)
T ss_pred hHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhh
Confidence 6655555544432 1111222222 2223445555555555554431 22111 1111223456
Q ss_pred cCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccH
Q 009556 300 AGDVAKALELFTQMQEQ---GFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDP 376 (532)
Q Consensus 300 ~g~~~~A~~~~~~m~~~---~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 376 (532)
.|++..|.+.+.+.+.. ...|+...|........+.|+.++|+.--+...+.+ +.-...+..-..++...+++++|
T Consensus 262 ~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~A 340 (486)
T KOG0550|consen 262 NGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEA 340 (486)
T ss_pred ccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777776643 244455556666666667777777776666655443 11112222223334445566666
Q ss_pred HHHHHHHHHc
Q 009556 377 EECIAALKLE 386 (532)
Q Consensus 377 ~~~~~~~~~~ 386 (532)
.+-++...+.
T Consensus 341 V~d~~~a~q~ 350 (486)
T KOG0550|consen 341 VEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHhh
Confidence 6666655443
No 196
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.92 E-value=0.35 Score=44.93 Aligned_cols=107 Identities=14% Similarity=0.098 Sum_probs=66.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009556 324 IFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYA 403 (532)
Q Consensus 324 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 403 (532)
+.+..+.-+...|+...|.++-.+. . .|+...|-..+.+|+..+++++-..+... +-++..|..++..|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 3444455556666666666654443 1 45667777777777777777766654332 112355777777777
Q ss_pred hcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009556 404 QQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVY 450 (532)
Q Consensus 404 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 450 (532)
+.|+..+|..+...+. +..-+..|.++|++.+|.+.-
T Consensus 249 ~~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HCCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHH
Confidence 7777777777776622 134566777777777776543
No 197
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.91 E-value=0.16 Score=44.03 Aligned_cols=60 Identities=12% Similarity=-0.029 Sum_probs=35.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC--CCChHhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 009556 117 SLIEALASVGRTLEADAIFQEMVCFGF--NPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDM 176 (532)
Q Consensus 117 ~li~~~~~~~~~~~A~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 176 (532)
.....+...|++.+|.+.|+.+..... +--....-.++.++.+.|+++.|...+++..+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344555667777777777777775421 111233445666777777777777777776654
No 198
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.91 E-value=0.18 Score=41.50 Aligned_cols=92 Identities=14% Similarity=0.173 Sum_probs=38.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCC---CCCHHHHHHHHHHHH
Q 009556 327 TIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGL---QPSGSMFCILANAYA 403 (532)
Q Consensus 327 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~ 403 (532)
.+..+..+.|+..+|...|.+...--...|....-.+.++....+++..|...++.+-+.+. .|| +...+.+.+.
T Consensus 94 rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~Ll~aR~la 171 (251)
T COG4700 94 RLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHLLFARTLA 171 (251)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chHHHHHHHH
Confidence 34444444444444444444444333333344444444444444444444444444433221 122 1223344444
Q ss_pred hcCCHHHHHHHHHHhcc
Q 009556 404 QQGLCEQTVKVLQLMEP 420 (532)
Q Consensus 404 ~~g~~~~A~~~~~~m~~ 420 (532)
..|.+..|+..|+....
T Consensus 172 a~g~~a~Aesafe~a~~ 188 (251)
T COG4700 172 AQGKYADAESAFEVAIS 188 (251)
T ss_pred hcCCchhHHHHHHHHHH
Confidence 44444444444444443
No 199
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.86 E-value=0.43 Score=45.05 Aligned_cols=423 Identities=12% Similarity=0.103 Sum_probs=236.5
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHH
Q 009556 75 FSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILL 154 (532)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li 154 (532)
-|..+|-.||..|..++.+++..+++++|..- .+.-+.+|..-+.+-...+++.....+|.+.+... .+...|...+
T Consensus 40 tnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--l~ldLW~lYl 116 (660)
T COG5107 40 TNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS--LNLDLWMLYL 116 (660)
T ss_pred hhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--ccHhHHHHHH
Confidence 46778999999999999999999999999853 23345678888888778889999999999988764 4566777777
Q ss_pred HHHHhcCChh------HHHHHHHHHHH-cCCCcC-HHHHHHHHHHHH---hcC------ChHHHHHHHHHHHHCCCCcCH
Q 009556 155 RGFLKKGLLG------LGSRLLMVMED-MGICRN-QETYEILLDYHV---NAG------RLDDTWLIINEMRSKGFQLNS 217 (532)
Q Consensus 155 ~~~~~~g~~~------~A~~~~~~m~~-~~~~~~-~~~~~~li~~~~---~~~------~~~~a~~~~~~m~~~~~~~~~ 217 (532)
....+.+..- ...+.|+-... .++.|- ...|+..+..+- ..| +.+...+.+.+|..-.+.-=.
T Consensus 117 ~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nle 196 (660)
T COG5107 117 EYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLE 196 (660)
T ss_pred HHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHH
Confidence 6655543221 12233433333 234443 335666555432 233 345566667777664322111
Q ss_pred HhHH------HHHHHH-H------cCCChHHHHHHHHHHHH--cCCC----CCHHHHH-----------HHHHHHhccC-
Q 009556 218 FVYG------KVIGLY-R------DNGMWKKAVGIVEEIRE--MGLS----LDRQIYN-----------SIIDTFGKYG- 266 (532)
Q Consensus 218 ~~~~------~ll~~~-~------~~~~~~~a~~~~~~~~~--~~~~----~~~~~~~-----------~li~~~~~~g- 266 (532)
..|. .=++-. + ..--+-.|.+.++++.. .|+. .+..++| ..|+.-...|
T Consensus 197 klW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l 276 (660)
T COG5107 197 KLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGL 276 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCc
Confidence 1111 111110 1 01124455556665532 2221 1122222 2222211111
Q ss_pred ----C-HH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH------------------
Q 009556 267 ----E-LV-EALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDP------------------ 322 (532)
Q Consensus 267 ----~-~~-~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~------------------ 322 (532)
+ .. ..--++++...- +.-....|----.-+...++-+.|+.....-.+. .|+.
T Consensus 277 ~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--spsL~~~lse~yel~nd~e~v~ 353 (660)
T COG5107 277 KLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPSLTMFLSEYYELVNDEEAVY 353 (660)
T ss_pred ccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCchheeHHHHHhhcccHHHHh
Confidence 1 11 111122222211 1112233333333445566777777665543221 2221
Q ss_pred HHHHHHHHHHHc---cCCHHHHHHH------HHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcC-CCCCH
Q 009556 323 KIFITIISCLGE---LGKWDVIKKN------FENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEG-LQPSG 392 (532)
Q Consensus 323 ~~~~~ll~~~~~---~~~~~~a~~~------~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~ 392 (532)
.+|..++..+.+ .++-+.+... ..+..-.....-..+|...+.+..+..-++.|..+|-+..+.+ +.++.
T Consensus 354 ~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~v 433 (660)
T COG5107 354 GCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHV 433 (660)
T ss_pred hhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcce
Confidence 011111111110 0111111000 0111000011224566777777778888899999999998888 56788
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHH
Q 009556 393 SMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVML-NVLINAFGVAGKYKEALSVYHLMKDIGISPD--LVTYSTLM 469 (532)
Q Consensus 393 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~ 469 (532)
.++++++.-++ .|+...|..+|+.-... -||...| +..+.-+..-++-+.|..+|+...++ +..+ ...|..+|
T Consensus 434 yi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi 509 (660)
T COG5107 434 YIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMI 509 (660)
T ss_pred eeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHH
Confidence 88888888665 57888899998865544 3454443 56677778889999999999966543 2223 45788999
Q ss_pred HHHHhcCCcChHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 009556 470 KAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSALVV 509 (532)
Q Consensus 470 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~a~~~ 509 (532)
+--..-|+...+..+-++|.+ +.|...+.....+-+.-
T Consensus 510 ~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~i 547 (660)
T COG5107 510 EYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYAI 547 (660)
T ss_pred HHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHhh
Confidence 988899999999999999987 67777776666655443
No 200
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.84 E-value=0.0064 Score=42.01 Aligned_cols=64 Identities=14% Similarity=0.056 Sum_probs=39.2
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcC-ChhHHHHHHHHHHH
Q 009556 111 SSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKG-LLGLGSRLLMVMED 175 (532)
Q Consensus 111 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~ 175 (532)
++.+|..+...+...|++++|+..|.+..+.. +.+...|..+..++.+.| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34556666666666666666666666666654 334556666666666666 46666666665554
No 201
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.81 E-value=0.3 Score=42.60 Aligned_cols=145 Identities=14% Similarity=0.108 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHH
Q 009556 304 AKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAAL 383 (532)
Q Consensus 304 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 383 (532)
+..+++|++=.. .....++..+...+.+.-....+.++++...+.++...+.|+..-.+.|+.+.|...|++.
T Consensus 166 ESsv~lW~KRl~-------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~v 238 (366)
T KOG2796|consen 166 ESSIRLWRKRLG-------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDV 238 (366)
T ss_pred hhHHHHHHHHHH-------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 445555554332 3345566666667777777778888887777777888888888888888888888888877
Q ss_pred HHcCCCCCHHHHHHHH-----HHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009556 384 KLEGLQPSGSMFCILA-----NAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDI 456 (532)
Q Consensus 384 ~~~~~~~~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 456 (532)
.+..-..+..+.+.++ ..|.-.+++..|...+.+..... ..|....|.-.-+..-.|+..+|.+.++.|...
T Consensus 239 ek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 239 EKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred HHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6654444444444433 23444567888888887777654 345555555555555678899999999998875
No 202
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.79 E-value=0.016 Score=53.49 Aligned_cols=132 Identities=17% Similarity=0.031 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHh----cCC-CCCHhHHHHHHHHHHhcCCcccHHHHHHHHHH----cCC-CCCH
Q 009556 323 KIFITIISCLGELGKWDVIKKNFENMKD----RGH-GKIGAIYAILVDIYGQYGRFRDPEECIAALKL----EGL-QPSG 392 (532)
Q Consensus 323 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~-~~~~ 392 (532)
..|..+...|.-.|+++.|+..++.-.. .|- ......+..+..++.-.|+++.|.+.|+.... .|- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 3455555566667788888776654332 121 11234566778888888889988888875432 221 1223
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhcc----C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009556 393 SMFCILANAYAQQGLCEQTVKVLQLMEP----E-GIEPNLVMLNVLINAFGVAGKYKEALSVYHLMK 454 (532)
Q Consensus 393 ~~~~~li~~~~~~g~~~~A~~~~~~m~~----~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 454 (532)
.+.-+|...|.-..++++|+.++.+-.. . ...-....+.+|..+|...|..++|+.+.+.-.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4455677777777788888887764321 1 112245667788889988898888887766544
No 203
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.76 E-value=0.03 Score=50.35 Aligned_cols=94 Identities=10% Similarity=-0.028 Sum_probs=54.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHH
Q 009556 395 FCILANAYAQQGLCEQTVKVLQLMEPEGIEPNL----VMLNVLINAFGVAGKYKEALSVYHLMKDIGI--SPDLVTYSTL 468 (532)
Q Consensus 395 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~l 468 (532)
|...+..+.+.|++++|...|+.+.+. .|+. ..+-.+..+|...|++++|...|+.+.+.-. +.....+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 443333334556677777666666654 2322 3455666677777777777777777764311 1123334445
Q ss_pred HHHHHhcCCcChHHHHHHHHHh
Q 009556 469 MKAFIRAKKFHKVPEIYKQMES 490 (532)
Q Consensus 469 ~~~~~~~g~~~~a~~~~~~m~~ 490 (532)
...+...|+.++|.++|++..+
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 5566667777777777777765
No 204
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.75 E-value=0.035 Score=49.93 Aligned_cols=97 Identities=14% Similarity=0.013 Sum_probs=64.9
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH----hHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCChHhHH
Q 009556 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSS----ISYASLIEALASVGRTLEADAIFQEMVCFG--FNPKLRFYN 151 (532)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~~~~~g--~~~~~~~~~ 151 (532)
..|+..+..+.+.|++++|+..|+.+.+. .|+. ..+-.+..++...|++++|...|+.+.+.- -+.....+-
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 44666666556678888888888888776 3442 466677778888888888888888887542 011233444
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHc
Q 009556 152 ILLRGFLKKGLLGLGSRLLMVMEDM 176 (532)
Q Consensus 152 ~li~~~~~~g~~~~A~~~~~~m~~~ 176 (532)
.+...+...|+.+.|.++|+.+.+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4555666777777777777777654
No 205
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.75 E-value=0.044 Score=53.63 Aligned_cols=258 Identities=13% Similarity=0.134 Sum_probs=140.6
Q ss_pred cCHHhHHHHHHHHHcCCChHHHHHH---------HHHHHHcCCCCCHHHHHHHHHHHhccCC--HHHHHHHHHHHHhCCC
Q 009556 215 LNSFVYGKVIGLYRDNGMWKKAVGI---------VEEIREMGLSLDRQIYNSIIDTFGKYGE--LVEALEVFEKMQQESI 283 (532)
Q Consensus 215 ~~~~~~~~ll~~~~~~~~~~~a~~~---------~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~ 283 (532)
+.+..+.+-+..|...|.+++|.++ ++.+... ..+...++..=++|.+..+ +-+...-+++++++|-
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge 631 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGE 631 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCC
Confidence 3444455555667777877777654 2222211 1133345555567766665 3344455677888888
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHH-----HHHHHHHccCCHHHHHHHHHHHHhcCCCCCH
Q 009556 284 RPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDP-KIFI-----TIISCLGELGKWDVIKKNFENMKDRGHGKIG 357 (532)
Q Consensus 284 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~-----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 357 (532)
.|+... +...++-.|++.+|-++|.+- |..... ..|+ -..+-+...|..++-..+.++-.+- .-+.
T Consensus 632 ~P~~iL---lA~~~Ay~gKF~EAAklFk~~---G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~ 703 (1081)
T KOG1538|consen 632 TPNDLL---LADVFAYQGKFHEAAKLFKRS---GHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADW--ARNI 703 (1081)
T ss_pred CchHHH---HHHHHHhhhhHHHHHHHHHHc---CchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHH--hhhc
Confidence 787653 445566677888888777653 222100 0111 1122233344433333333221110 0000
Q ss_pred hHHHHHHHHHHhcCCcccHHHHHHH------HHHcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHH
Q 009556 358 AIYAILVDIYGQYGRFRDPEECIAA------LKLEGL---QPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLV 428 (532)
Q Consensus 358 ~~~~~li~~~~~~g~~~~a~~~~~~------~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 428 (532)
.-=.+..+++...|+.++|..+.-+ +.+-+. ..+..+...+..-+.+...+.-|.++|..|-+.
T Consensus 704 kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~------- 776 (1081)
T KOG1538|consen 704 KEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL------- 776 (1081)
T ss_pred CCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH-------
Confidence 0012334555667777777665321 111111 122334444445555566677788888877542
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-----------HHHHHHHHHHhcCCcChHHHHHHHHHhCCC
Q 009556 429 MLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLV-----------TYSTLMKAFIRAKKFHKVPEIYKQMESSGC 493 (532)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-----------~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 493 (532)
..+++.....++|.+|..+-+...+. .||+. -|.-.-++|.++|+..+|.++++++....+
T Consensus 777 --ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnnav 848 (1081)
T KOG1538|consen 777 --KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAV 848 (1081)
T ss_pred --HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhhh
Confidence 35677888899999999888776542 34432 234445788899999999999999875433
No 206
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.72 E-value=0.014 Score=47.52 Aligned_cols=73 Identities=25% Similarity=0.378 Sum_probs=41.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHH-----hCCCCCCHHHHHHH
Q 009556 430 LNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQME-----SSGCTPDRKARQIL 503 (532)
Q Consensus 430 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~g~~p~~~t~~~l 503 (532)
...++..+...|++++|.++.+.+.... +-|...|..++.+|...|+...|.+.|+++. +.|+.|+..+-...
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~ 142 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALY 142 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHH
Confidence 3445555666777777777777766542 2355667777777777777777777776664 34777776655443
No 207
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.65 E-value=0.016 Score=40.44 Aligned_cols=57 Identities=19% Similarity=0.190 Sum_probs=41.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009556 85 QYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFG 142 (532)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g 142 (532)
..|.+.+++++|+++++.+...+ +.++..+......+...|++++|.+.|+...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 45677777888888887777764 4566667777777777778888877777777654
No 208
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.64 E-value=0.014 Score=47.58 Aligned_cols=56 Identities=23% Similarity=0.263 Sum_probs=26.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHH
Q 009556 117 SLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVM 173 (532)
Q Consensus 117 ~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 173 (532)
.++..+...|++++|.++.+.+.... +.|...|..+|.+|...|+...|.++|+.+
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 34444445555555555555555443 334445555555555555555555555544
No 209
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.63 E-value=0.99 Score=46.18 Aligned_cols=178 Identities=15% Similarity=0.180 Sum_probs=107.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhH----HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHH
Q 009556 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSIS----YASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILL 154 (532)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~----~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li 154 (532)
...+-|+.+++..-++-|+.+.+.-. .+..+ .......+.+.|++++|...|-+....- .| ..++
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~-----~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~-----s~Vi 404 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQH-----LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-EP-----SEVI 404 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-Ch-----HHHH
Confidence 34556677777777777776655432 23333 3333445557788888888776655321 22 2345
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChH
Q 009556 155 RGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWK 234 (532)
Q Consensus 155 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 234 (532)
.-|....++.+-...++.+.+.|+ .+...-..|+.+|.+.++.+.-.+..+.-. .|.. ..-....+..+.+.+-.+
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~ 480 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLD 480 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHH
Confidence 556666666677777778877777 556666778888888888887666665543 2211 112345566666777677
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 009556 235 KAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQ 279 (532)
Q Consensus 235 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 279 (532)
+|..+-..... .......++ -..+++++|++.+..+.
T Consensus 481 ~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 481 EAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence 66655443322 333333333 34578888888887764
No 210
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.55 E-value=0.91 Score=44.98 Aligned_cols=40 Identities=13% Similarity=0.303 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHH
Q 009556 200 DTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEE 242 (532)
Q Consensus 200 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 242 (532)
+...-+++++++|-.|+... +...++-.|++.+|-++|.+
T Consensus 618 ~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 618 ELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 33444566777777777653 34456677888888887765
No 211
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.51 E-value=0.015 Score=40.59 Aligned_cols=54 Identities=13% Similarity=0.177 Sum_probs=28.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHh
Q 009556 436 AFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES 490 (532)
Q Consensus 436 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (532)
.|.+.+++++|.++++.+...+. .+...|.....++.+.|++++|.+.+++..+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDP-DDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCc-ccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 44555555555555555555421 2344444555555555555555555555554
No 212
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.46 E-value=0.76 Score=42.75 Aligned_cols=283 Identities=16% Similarity=0.175 Sum_probs=151.1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHH
Q 009556 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFL 158 (532)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 158 (532)
+|..+.....+.|+.+-|..+++. .|+.. .=+..+.+.|+.+.| +.+..+.| .||. +|..|+..--
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~~------Ep~~~---~qVplLL~m~e~e~A---L~kAi~Sg-D~DL-i~~vLl~L~~ 67 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLEL------EPRAS---KQVPLLLKMGEDELA---LNKAIESG-DTDL-IYLVLLHLKR 67 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHHc------CCChH---HHHHHHhcCCchHHH---HHHHHHcC-CccH-HHHHHHHHHH
Confidence 467777778888999999887754 23332 225566677777776 45666665 3443 4444444333
Q ss_pred hcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHH
Q 009556 159 KKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVG 238 (532)
Q Consensus 159 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 238 (532)
+.. . .+++.-+... |.. ..+...|++..+.+.-.++|..-.+. .......+-.++.. .+.+.-..
T Consensus 68 ~l~-~---s~f~~il~~~---p~a---~~l~~~~~r~~~~~~L~~~y~q~d~~----~~~a~~~l~~~~~~-~~~~~~~~ 132 (319)
T PF04840_consen 68 KLS-L---SQFFKILNQN---PVA---SNLYKKYCREQDRELLKDFYYQEDRF----QELANLHLQEALSQ-KDVEEKIS 132 (319)
T ss_pred hCC-H---HHHHHHHHhC---cch---HHHHHHHHHhccHHHHHHHHHhcchH----HHHHHHHHHHHHhC-CChHHHHH
Confidence 222 1 1233222221 221 23344455555555544444321110 11111111122221 23333222
Q ss_pred HHHHHHHc-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHH---HHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009556 239 IVEEIREM-GLSLDRQIYNSIIDTFGKYGELVEALEVFEK---MQQE-SIRPDIVTWNSLIRWHCKAGDVAKALELFTQM 313 (532)
Q Consensus 239 ~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~---m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 313 (532)
.+..+.+. +-..+......++ ++..++++. +... +......+.+..|.-+...|+...|.++-.+.
T Consensus 133 ~L~~a~~~y~~~k~~~f~~~~~---------e~q~~Ll~~Q~~Le~~~~~~f~~~Sl~~Ti~~li~~~~~k~A~kl~k~F 203 (319)
T PF04840_consen 133 FLKQAQKLYSKSKNDAFEAKLI---------EEQIKLLEYQKELEEKYNTNFVGLSLNDTIRKLIEMGQEKQAEKLKKEF 203 (319)
T ss_pred HHHHHHHHHHhcchhHHHHHHH---------HHHHHHHHHHHHHHHHhccchhcCCHHHHHHHHHHCCCHHHHHHHHHHc
Confidence 22222211 0001111111111 112222211 1110 11112234555677777888888888776665
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHH
Q 009556 314 QEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGS 393 (532)
Q Consensus 314 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 393 (532)
. .|+..-|...+.+++..++|++..++-.. .-++.-|..+++++.+.|+..+|..++..+ +
T Consensus 204 k----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~~yI~k~-----~---- 264 (319)
T PF04840_consen 204 K----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEASKYIPKI-----P---- 264 (319)
T ss_pred C----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHHHHHHhC-----C----
Confidence 2 47888888899999999999988876432 223567888999999999999988888762 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhc
Q 009556 394 MFCILANAYAQQGLCEQTVKVLQLME 419 (532)
Q Consensus 394 ~~~~li~~~~~~g~~~~A~~~~~~m~ 419 (532)
+..-+..|.+.|++.+|.+.--+..
T Consensus 265 -~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 265 -DEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred -hHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 3456778889999998887655543
No 213
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.34 E-value=0.6 Score=40.36 Aligned_cols=206 Identities=12% Similarity=0.096 Sum_probs=104.4
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHH
Q 009556 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGF 157 (532)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 157 (532)
..|..-..+|-...++++|...+.+..+- ...|...|. - ...++.|.-+.+++.+. +.-+..|+-....|
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-A------AKayEqaamLake~~kl--sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-A------AKAYEQAAMLAKELSKL--SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-H------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 34666667777778888888877776532 122222222 1 22345555566666543 22344566667778
Q ss_pred HhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---C--CCcCHHhHHHHHHHHHcCCC
Q 009556 158 LKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSK---G--FQLNSFVYGKVIGLYRDNGM 232 (532)
Q Consensus 158 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~--~~~~~~~~~~ll~~~~~~~~ 232 (532)
..+|..+.|-..+++.-+. .++.++++|+++|++...- + ...-...+..+-+.+.+...
T Consensus 102 ~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k 165 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK 165 (308)
T ss_pred HHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH
Confidence 8888888777766665441 2344556666666554221 0 00011223333445555555
Q ss_pred hHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHHcCCHH
Q 009556 233 WKKAVGIVEEIREM----GLSLD-RQIYNSIIDTFGKYGELVEALEVFEKMQQES---IRPDIVTWNSLIRWHCKAGDVA 304 (532)
Q Consensus 233 ~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~ 304 (532)
+++|-..+.+-... .--++ -..|.+.|-.|.-..++..|...++.-.+.+ -.-+..+...|+.+| ..|+.+
T Consensus 166 f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E 244 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIE 244 (308)
T ss_pred hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHH
Confidence 55554443322111 00111 1234444445555667777777776643321 122455556666655 345555
Q ss_pred HHHHHH
Q 009556 305 KALELF 310 (532)
Q Consensus 305 ~A~~~~ 310 (532)
++..++
T Consensus 245 ~~~kvl 250 (308)
T KOG1585|consen 245 EIKKVL 250 (308)
T ss_pred HHHHHH
Confidence 554443
No 214
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.28 E-value=0.07 Score=41.75 Aligned_cols=84 Identities=14% Similarity=0.230 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhcc---------------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-
Q 009556 391 SGSMFCILANAYAQQGLCEQTVKVLQLMEP---------------EGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMK- 454 (532)
Q Consensus 391 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---------------~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~- 454 (532)
|..++..++.++++.|+.+....+++..=. ....|+..+..+++.+|+..|++..|.++.+...
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 456778888888888888888887765311 1234666666677777776777777777666664
Q ss_pred HCCCCCCHHHHHHHHHHHHh
Q 009556 455 DIGISPDLVTYSTLMKAFIR 474 (532)
Q Consensus 455 ~~~~~p~~~~~~~l~~~~~~ 474 (532)
..+++.+..+|..|+.-+..
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHH
Confidence 33555556666666654443
No 215
>PRK15331 chaperone protein SicA; Provisional
Probab=96.20 E-value=0.2 Score=40.67 Aligned_cols=90 Identities=9% Similarity=-0.038 Sum_probs=69.4
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChh
Q 009556 85 QYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLG 164 (532)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 164 (532)
-.+...|++++|..+|.-+...+ +-|..-|..|..++-..+++++|...|......+ ..|...+-....++...|+.+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHH
Confidence 34457899999999999888765 3456667777778888899999999988877655 345555666778888889999
Q ss_pred HHHHHHHHHHHc
Q 009556 165 LGSRLLMVMEDM 176 (532)
Q Consensus 165 ~A~~~~~~m~~~ 176 (532)
.|...|+...+.
T Consensus 123 ~A~~~f~~a~~~ 134 (165)
T PRK15331 123 KARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHhC
Confidence 999988888763
No 216
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.20 E-value=0.14 Score=40.02 Aligned_cols=46 Identities=11% Similarity=0.257 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhccC-CCCCCHHHHHHHHH
Q 009556 390 PSGSMFCILANAYAQQGLCEQTVKVLQLMEPE-GIEPNLVMLNVLIN 435 (532)
Q Consensus 390 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~ 435 (532)
|+..+..+++.+|+..|++..|.++++...+. +++.+..+|..|+.
T Consensus 50 Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 50 PTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 44444555555555555555555554444322 33444444444443
No 217
>PRK15331 chaperone protein SicA; Provisional
Probab=96.16 E-value=0.14 Score=41.52 Aligned_cols=87 Identities=10% Similarity=0.063 Sum_probs=45.9
Q ss_pred HHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChH
Q 009556 402 YAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKV 481 (532)
Q Consensus 402 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 481 (532)
+...|++++|..+|+-+...+ .-|..-|..|..++-..+++++|...|......+. -|+..+-....++...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 334566666666665554433 22344445555555555666666666655543322 2333344455556666666666
Q ss_pred HHHHHHHHh
Q 009556 482 PEIYKQMES 490 (532)
Q Consensus 482 ~~~~~~m~~ 490 (532)
...|+...+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 666666554
No 218
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.11 E-value=1.3 Score=41.83 Aligned_cols=184 Identities=12% Similarity=0.069 Sum_probs=90.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHc---cCCHHHHHHHHHHHHhcCCCCCHhHHHHHHH
Q 009556 292 SLIRWHCKAGDVAKALELFTQMQEQG---FYPDPKIFITIISCLGE---LGKWDVIKKNFENMKDRGHGKIGAIYAILVD 365 (532)
Q Consensus 292 ~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 365 (532)
.++-+|-...+++..+++.+.+.... +.-....-....-++.+ .|+.++|.+++..+......+++.++..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 34445777777888888887776541 11122222233334455 6777777777777555555666666666655
Q ss_pred HHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCC-H-
Q 009556 366 IYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGK-Y- 443 (532)
Q Consensus 366 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~- 443 (532)
.|-.. |. +.+. -+.. ..++|...+.+.-+. .||..+=-.+...+...|. .
T Consensus 226 IyKD~---------~~---~s~~-~d~~-------------~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~ 277 (374)
T PF13281_consen 226 IYKDL---------FL---ESNF-TDRE-------------SLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFE 277 (374)
T ss_pred HHHHH---------HH---HcCc-cchH-------------HHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCccc
Confidence 54321 10 0000 0111 144555555544332 2333221111112222222 1
Q ss_pred --HHHHHHH---HH-HHHCCCC---CCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCHHHHHHHHH
Q 009556 444 --KEALSVY---HL-MKDIGIS---PDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQS 505 (532)
Q Consensus 444 --~~A~~~~---~~-m~~~~~~---p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~ 505 (532)
.+..++- .. ..+.|.. .|--.+.+++.++.-.|++++|.+..++|.+. .|+..-....++
T Consensus 278 ~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l--~~~~W~l~St~~ 346 (374)
T PF13281_consen 278 TSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL--KPPAWELESTLE 346 (374)
T ss_pred chHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--CCcchhHHHHHH
Confidence 1122221 11 1122322 23334567788888889999999999998874 344433333333
No 219
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.02 E-value=0.015 Score=41.26 Aligned_cols=61 Identities=30% Similarity=0.464 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CC-HHHHHHHHHHHHhcCCcChHHHHHHHHH
Q 009556 429 MLNVLINAFGVAGKYKEALSVYHLMKDI----GIS-PD-LVTYSTLMKAFIRAKKFHKVPEIYKQME 489 (532)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 489 (532)
+|+.+...|...|++++|+..|++..+. |-. |+ ..++..+..++...|++++|.+.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555555421 110 11 2345555555666666666666655544
No 220
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.94 E-value=0.019 Score=40.73 Aligned_cols=62 Identities=24% Similarity=0.335 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcC--CC---CC-HhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009556 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALG--FH---PS-SISYASLIEALASVGRTLEADAIFQEMV 139 (532)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~---~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~ 139 (532)
.+|+.+...|.+.|++++|++.|++..+.. .. |+ ..++..+...+...|++++|++.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 356667777777777777777777655331 11 11 3355666666666666666666666654
No 221
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.9 Score=40.69 Aligned_cols=50 Identities=28% Similarity=0.265 Sum_probs=23.0
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009556 89 KLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMV 139 (532)
Q Consensus 89 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 139 (532)
..|++.+|..+|+...... +.+...--.++.++...|+.+.|..++..+.
T Consensus 146 ~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 3445555555555444432 2223333444445555555555555554443
No 222
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.83 E-value=0.76 Score=36.97 Aligned_cols=126 Identities=11% Similarity=0.049 Sum_probs=75.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHh
Q 009556 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLK 159 (532)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 159 (532)
...+|..+.+.+....+...++.+...+ ..+...++.++..+++.+ .++..+.+.. ..+......+++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 3577888888888888888888888776 467778888888888763 3334444332 1233444556677777
Q ss_pred cCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHH
Q 009556 160 KGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNA-GRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYR 228 (532)
Q Consensus 160 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 228 (532)
.+.++++..++.++.. |...+..+... ++++.|.+.+.+- .+...|..++..+.
T Consensus 82 ~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 82 AKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred cCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 7777777766665532 22233333333 5566666655541 14445555554443
No 223
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.81 E-value=0.28 Score=47.87 Aligned_cols=158 Identities=15% Similarity=0.176 Sum_probs=103.6
Q ss_pred HHHHHcCChHHHHHHHH--HHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCC
Q 009556 85 QYCCKLGDIDEAMALLA--QMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGL 162 (532)
Q Consensus 85 ~~~~~~g~~~~A~~~~~--~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 162 (532)
+...-+++++++.+..+ ++.. .+ ...-.+.++.-+-+.|..+.|+++-.+-. .-.....+.|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCC
Confidence 34456799999877775 2221 11 24557888999999999999998754422 23456678899
Q ss_pred hhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHH
Q 009556 163 LGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEE 242 (532)
Q Consensus 163 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 242 (532)
++.|.++.++. .+...|..|.+...+.|+++-|.+.|.+..+ +..|+-.|.-.|+.+.-.++.+.
T Consensus 334 L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 334 LDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHH
Confidence 99998765433 4677999999999999999999999987643 55667778888888888888777
Q ss_pred HHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 009556 243 IREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKM 278 (532)
Q Consensus 243 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 278 (532)
....|- +|....++.-.|+.++..+++.+-
T Consensus 399 a~~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 399 AEERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 776652 455555566668887777776543
No 224
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.70 E-value=0.61 Score=44.66 Aligned_cols=64 Identities=13% Similarity=0.060 Sum_probs=56.2
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH----hHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSS----ISYASLIEALASVGRTLEADAIFQEMVCF 141 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 141 (532)
+...|+.+..+|.+.|++++|+..|++..+.+ |+. .+|..+..+|...|+.++|++.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46779999999999999999999999988874 553 35899999999999999999999999875
No 225
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.69 E-value=0.2 Score=44.14 Aligned_cols=121 Identities=14% Similarity=0.130 Sum_probs=66.9
Q ss_pred CCCCCCChhhHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 009556 70 NSGEEFSGNSYNKSIQYCCKL-----GDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFN 144 (532)
Q Consensus 70 ~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~ 144 (532)
..+.+.|-.+|-+.+..+... +.++-....++.|.+.|+..|..+|+.|+..+-+..-... .+|+..
T Consensus 60 a~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~--nvfQ~~------ 131 (406)
T KOG3941|consen 60 AEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQ--NVFQKV------ 131 (406)
T ss_pred cCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccH--HHHHHH------
Confidence 444556666666666666432 4455555566667777777777777777666544321110 001100
Q ss_pred CChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCh-HHHHHHHHHHH
Q 009556 145 PKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRL-DDTWLIINEMR 209 (532)
Q Consensus 145 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~ 209 (532)
.--|- .+-+-+++++++|...|+.||..+-..|+.++.+.+-. .+..++.-.|.
T Consensus 132 ---------F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 132 ---------FLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred ---------HhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 00000 12234667777777777777777777777777776653 34444444443
No 226
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.57 E-value=2.3 Score=40.57 Aligned_cols=413 Identities=12% Similarity=0.131 Sum_probs=223.0
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH--HhcCCHHHHHHHHHHHHHC--CCC--------
Q 009556 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEAL--ASVGRTLEADAIFQEMVCF--GFN-------- 144 (532)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~--~~~~~~~~A~~~~~~~~~~--g~~-------- 144 (532)
.+.-+.+|++|.. ++.+.-...+....+. .| ...|-.+..++ -+.+.+.+|.+.+..-.+. +..
T Consensus 46 Evl~grilnAffl-~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni 121 (549)
T PF07079_consen 46 EVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNI 121 (549)
T ss_pred HHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhH
Confidence 3445778888875 4555555555555544 22 23344444443 3678888888877665543 211
Q ss_pred ----CChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCC----CcCHHHHHHHHHHHHhc--------CC-------hHHH
Q 009556 145 ----PKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGI----CRNQETYEILLDYHVNA--------GR-------LDDT 201 (532)
Q Consensus 145 ----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~~~~~~~~~li~~~~~~--------~~-------~~~a 201 (532)
+|...-+..+..+...|++.+++.++++|...=. ..+..+|+.++-.+.+. .. ++.+
T Consensus 122 ~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemi 201 (549)
T PF07079_consen 122 QQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMI 201 (549)
T ss_pred HHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHH
Confidence 2223335567778889999999999888876533 36788888755544432 11 1222
Q ss_pred HHHHHHHHHC------CCCcCHHhHHHHHHHHHcC--CChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHH
Q 009556 202 WLIINEMRSK------GFQLNSFVYGKVIGLYRDN--GMWKKAVGIVEEIREMGLSLDRQ-IYNSIIDTFGKYGELVEAL 272 (532)
Q Consensus 202 ~~~~~~m~~~------~~~~~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~ 272 (532)
.-..++|... .+.|.......++....-. .+..--.++++.....-+.|+-. +...++..+.+ +.+++.
T Consensus 202 lfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~ 279 (549)
T PF07079_consen 202 LFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVG 279 (549)
T ss_pred HHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHH
Confidence 2223333221 2334444444444333221 12222233333333333444432 33444444444 555555
Q ss_pred HHHHHHHhCCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH-------HHHHHH-cc---CC
Q 009556 273 EVFEKMQQESIR----PDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFIT-------IISCLG-EL---GK 337 (532)
Q Consensus 273 ~~~~~m~~~~~~----p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-------ll~~~~-~~---~~ 337 (532)
.+-+.+....+. .=+.++..++....+.++..+|.+.+.-+... .|+...-.. +-+..+ .- .+
T Consensus 280 ~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tk 357 (549)
T PF07079_consen 280 HFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTK 357 (549)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHH
Confidence 555444332111 13456788888889999999998888877643 333221111 111111 11 12
Q ss_pred HHHHHHHHHHHHhcCCCCCHhHHHHHH---HHHHhcCC-cccHHHHHHHHHHcCCCCCHHHHHHH----HHHHHhc---C
Q 009556 338 WDVIKKNFENMKDRGHGKIGAIYAILV---DIYGQYGR-FRDPEECIAALKLEGLQPSGSMFCIL----ANAYAQQ---G 406 (532)
Q Consensus 338 ~~~a~~~~~~~~~~~~~~~~~~~~~li---~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l----i~~~~~~---g 406 (532)
...-..+++.+...++.. ......|+ .-+.+.|. -++|..+++.+.+-. +-|...-|.+ =.+|.+. .
T Consensus 358 lr~yL~lwe~~qs~DiDr-qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~ 435 (549)
T PF07079_consen 358 LRDYLNLWEEIQSYDIDR-QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMH 435 (549)
T ss_pred HHHHHHHHHHHHhhcccH-HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhh
Confidence 223334444444443221 12222222 33445565 778899998887642 2233322222 2233322 2
Q ss_pred CHHHHHHHHHHhccCCCCCCH----HHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCh
Q 009556 407 LCEQTVKVLQLMEPEGIEPNL----VMLNVLINA--FGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHK 480 (532)
Q Consensus 407 ~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 480 (532)
.+..-.++-+-..+.|++|-. ..-|.|.++ +..+|++.++.-.-.-+.+ +.|++.+|..+.-+.....++++
T Consensus 436 ~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~e 513 (549)
T PF07079_consen 436 AIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQE 513 (549)
T ss_pred hHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHH
Confidence 344445555555667777633 344555543 4568899888754333333 78999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHH
Q 009556 481 VPEIYKQMESSGCTPDRKARQILQSA 506 (532)
Q Consensus 481 a~~~~~~m~~~g~~p~~~t~~~l~~a 506 (532)
|+.++..+ +|+..+++.=++-
T Consensus 514 A~~~l~~L-----P~n~~~~dskvqK 534 (549)
T PF07079_consen 514 AWEYLQKL-----PPNERMRDSKVQK 534 (549)
T ss_pred HHHHHHhC-----CCchhhHHHHHHH
Confidence 99998764 6777776654443
No 227
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.53 E-value=2.8 Score=41.44 Aligned_cols=134 Identities=10% Similarity=0.097 Sum_probs=97.2
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHH
Q 009556 75 FSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSI-SYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNIL 153 (532)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~l 153 (532)
.+-..|.++|..--...+.+.+..+++.+... .|... -|......=.+.|..+.+.++|++... |++..+..|...
T Consensus 43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y 119 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSY 119 (577)
T ss_pred hcccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHH
Confidence 34556777887766666677777888888765 45544 456666666788999999999999885 456666777666
Q ss_pred HHHHH-hcCChhHHHHHHHHHHHc-CCC-cCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 009556 154 LRGFL-KKGLLGLGSRLLMVMEDM-GIC-RNQETYEILLDYHVNAGRLDDTWLIINEMRSK 211 (532)
Q Consensus 154 i~~~~-~~g~~~~A~~~~~~m~~~-~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 211 (532)
...+. ..|+.+...+.|+...+. |.. .....|...|..-..++++.....++++.++-
T Consensus 120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 120 LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 55544 457778888888887764 221 34557888888888888999999999998875
No 228
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.50 E-value=2.4 Score=40.36 Aligned_cols=145 Identities=12% Similarity=0.118 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhcC-CCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 009556 323 KIFITIISCLGELGKWDVIKKNFENMKDRG-HGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANA 401 (532)
Q Consensus 323 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 401 (532)
..|...+....+...++.|..+|.+..+.+ ..++..++++++..++ .|+..-|..+|+.-...- +.+..--+..+.-
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f-~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF-PDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 456667777778888999999999999888 5778889999999876 478888999998765542 2233334566677
Q ss_pred HHhcCCHHHHHHHHHHhccCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009556 402 YAQQGLCEQTVKVLQLMEPEGIEPN--LVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAF 472 (532)
Q Consensus 402 ~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 472 (532)
+...++-+.|..+|+...+. +..+ ...|..+|.-=..-|+...+..+=++|.+. -|...+.....+-|
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry 545 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRY 545 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHH
Confidence 78889999999999965543 1222 467889999888999998888887777763 34443333333333
No 229
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.49 E-value=1.6 Score=38.34 Aligned_cols=130 Identities=12% Similarity=0.025 Sum_probs=61.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHH-----H
Q 009556 186 EILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSII-----D 260 (532)
Q Consensus 186 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li-----~ 260 (532)
+.++..+.-.+.+.-...++.+.++...+.++.....+.+.-.+.|+.+.|...|+...+..-..|....+.++ .
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 44445555555555555555555555444455555555555555666666666655544332222222222222 2
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 009556 261 TFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQ 316 (532)
Q Consensus 261 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 316 (532)
.|.-.+++.+|...|+++...+.. |+..-|.-.-+..-.|+...|++.++.|.+.
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred heecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 233444555555555555443221 3333333333333345555555555555543
No 230
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.47 E-value=2.2 Score=39.78 Aligned_cols=127 Identities=14% Similarity=0.028 Sum_probs=74.7
Q ss_pred HHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccC-CC-CCCHHHHHHHHHHHHhc
Q 009556 363 LVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPE-GI-EPNLVMLNVLINAFGVA 440 (532)
Q Consensus 363 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~-~p~~~~~~~li~~~~~~ 440 (532)
-..++.+.|+..++-.+++.+-+....|+. +. +..+.+.|+. +..-++..... .+ +.|.++.-.+..+-...
T Consensus 269 AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a~--lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda 342 (531)
T COG3898 269 AARALFRDGNLRKGSKILETAWKAEPHPDI--AL--LYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDA 342 (531)
T ss_pred HHHHHHhccchhhhhhHHHHHHhcCCChHH--HH--HHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhc
Confidence 345666777777777777777766544433 21 2223344432 22222211110 11 33556666777778888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCcChHHHHHHHHHhCCCCCCH
Q 009556 441 GKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRA-KKFHKVPEIYKQMESSGCTPDR 497 (532)
Q Consensus 441 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~g~~p~~ 497 (532)
|++..|..--+...+ ..|....|..|.+.-... |+-.++...+-+..+..-.|+-
T Consensus 343 ~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPaW 398 (531)
T COG3898 343 GEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPAW 398 (531)
T ss_pred cchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCcc
Confidence 888887766555554 357777777776655444 8888888888888766545543
No 231
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.46 E-value=2.2 Score=39.77 Aligned_cols=290 Identities=15% Similarity=0.082 Sum_probs=174.0
Q ss_pred HHHHHHHHHh--cCChhHHHHHHHHHHHcCCCcCHHHHHHHHHH--HHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHH
Q 009556 150 YNILLRGFLK--KGLLGLGSRLLMVMEDMGICRNQETYEILLDY--HVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIG 225 (532)
Q Consensus 150 ~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 225 (532)
|.+|-.++.. .|+-..|.++-.+..+. +..|......++.+ -.-.|+++.|.+-|+.|.. |+.+-..=++
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLR 158 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLR 158 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHH
Confidence 3444444433 46666776665554422 22455555555543 3456888888888888876 3444333233
Q ss_pred ----HHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC-CCCCCHHH--HHHHHHHHH
Q 009556 226 ----LYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQE-SIRPDIVT--WNSLIRWHC 298 (532)
Q Consensus 226 ----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~--~~~li~~~~ 298 (532)
..-+.|+.+.|.++-+..-..- +.-...+.+.+...|..|+++.|+++.+.-.+. -+.++..- -..|+.+-.
T Consensus 159 gLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA 237 (531)
T COG3898 159 GLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA 237 (531)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Confidence 3346788888888777766543 223556778888889999999999988876543 23334322 223333222
Q ss_pred H---cCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcc
Q 009556 299 K---AGDVAKALELFTQMQEQGFYPDPKI-FITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFR 374 (532)
Q Consensus 299 ~---~g~~~~A~~~~~~m~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 374 (532)
. ..+...|...-.+..+ +.||..- -.....++.+.|+..++-.+++.+-+....| .++ ..|.+...-+
T Consensus 238 ~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP--~ia----~lY~~ar~gd 309 (531)
T COG3898 238 MSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP--DIA----LLYVRARSGD 309 (531)
T ss_pred HHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh--HHH----HHHHHhcCCC
Confidence 1 2345555554444333 3454322 2233457889999999999999998875444 333 2344444444
Q ss_pred cHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHH
Q 009556 375 DPEECIAALKLE-GLQP-SGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFG-VAGKYKEALSVYH 451 (532)
Q Consensus 375 ~a~~~~~~~~~~-~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~ 451 (532)
.+..-++...+. ..+| +......+..+-...|++..|..--+..... .|....|..|.+.-. ..|+-.++..++.
T Consensus 310 ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlA 387 (531)
T COG3898 310 TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLA 387 (531)
T ss_pred cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHH
Confidence 555555544331 2234 3445556677777888988888777766553 677777877776554 4499999998888
Q ss_pred HHHHC
Q 009556 452 LMKDI 456 (532)
Q Consensus 452 ~m~~~ 456 (532)
+..+.
T Consensus 388 qav~A 392 (531)
T COG3898 388 QAVKA 392 (531)
T ss_pred HHhcC
Confidence 87764
No 232
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.42 E-value=0.35 Score=45.10 Aligned_cols=90 Identities=11% Similarity=0.027 Sum_probs=49.8
Q ss_pred HHHHHcCChHHHHHHHHHHHHc-----CCCC---------CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhH
Q 009556 85 QYCCKLGDIDEAMALLAQMQAL-----GFHP---------SSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFY 150 (532)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~m~~~-----~~~~---------~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~ 150 (532)
+.|.+.|++..|...|++.... +..+ -..+++.+.-++.+.+++..|++..+..+..+ ++|+-..
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 4678889999999888886542 0100 11234444555555555555555555555544 3444444
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHH
Q 009556 151 NILLRGFLKKGLLGLGSRLLMVMED 175 (532)
Q Consensus 151 ~~li~~~~~~g~~~~A~~~~~~m~~ 175 (532)
---..++...|+++.|+..|+++.+
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHH
Confidence 4444555555555555555555554
No 233
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.39 E-value=1.1 Score=44.40 Aligned_cols=161 Identities=11% Similarity=0.134 Sum_probs=97.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhcCCCCCH------hHHHHHHHHHHh----cCCcccHHHHHHHHHHcCCCCCHHHHH
Q 009556 327 TIISCLGELGKWDVIKKNFENMKDRGHGKIG------AIYAILVDIYGQ----YGRFRDPEECIAALKLEGLQPSGSMFC 396 (532)
Q Consensus 327 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 396 (532)
.++...+-.|+-+.+.+.+....+.+--..+ ..|...+..++. ....+.|.++++.+.+. -|+...|.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl 270 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFL 270 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHH
Confidence 4444444555555555555554432211111 122222322222 34566788888888775 56666665
Q ss_pred HH-HHHHHhcCCHHHHHHHHHHhccCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-
Q 009556 397 IL-ANAYAQQGLCEQTVKVLQLMEPEG---IEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKA- 471 (532)
Q Consensus 397 ~l-i~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~- 471 (532)
.. .+.+...|++++|.+.|+...... .......+--+...+.-.++|++|.+.|.++.+.. .-...+|.-+..+
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence 44 355677899999999999765421 12233456677788889999999999999998752 2234445444333
Q ss_pred HHhcCCc-------ChHHHHHHHHHh
Q 009556 472 FIRAKKF-------HKVPEIYKQMES 490 (532)
Q Consensus 472 ~~~~g~~-------~~a~~~~~~m~~ 490 (532)
+...|+. ++|.+++++...
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHHH
Confidence 3456777 778888877753
No 234
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.36 E-value=0.21 Score=43.99 Aligned_cols=71 Identities=27% Similarity=0.285 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc----------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009556 407 LCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVA----------------GKYKEALSVYHLMKDIGISPDLVTYSTLMK 470 (532)
Q Consensus 407 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~----------------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 470 (532)
.++-....++.|.+.|+.-|..+|+.|+..+-+. .+-+-+++++++|...|+.||..+-..|+.
T Consensus 87 HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn 166 (406)
T KOG3941|consen 87 HVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVN 166 (406)
T ss_pred hHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHH
Confidence 3444444555555666666666666655554332 123447888899999999999998888888
Q ss_pred HHHhcCC
Q 009556 471 AFIRAKK 477 (532)
Q Consensus 471 ~~~~~g~ 477 (532)
++.+.|-
T Consensus 167 ~FGr~~~ 173 (406)
T KOG3941|consen 167 AFGRWNF 173 (406)
T ss_pred Hhccccc
Confidence 8866654
No 235
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.36 E-value=0.34 Score=46.29 Aligned_cols=66 Identities=17% Similarity=-0.002 Sum_probs=58.0
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----HhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 009556 109 HPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKL----RFYNILLRGFLKKGLLGLGSRLLMVMEDM 176 (532)
Q Consensus 109 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 176 (532)
+.+...++.+..+|...|++++|+..|++.++.. |+. .+|..+..+|...|+.++|+..+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5667889999999999999999999999998865 543 45899999999999999999999999874
No 236
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.36 E-value=1.2 Score=35.89 Aligned_cols=43 Identities=9% Similarity=0.074 Sum_probs=21.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhc
Q 009556 117 SLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKK 160 (532)
Q Consensus 117 ~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 160 (532)
.++..+...+........++.+...+ ..+...++.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 44455544555555555555555444 24444555555555543
No 237
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.11 E-value=2.4 Score=39.00 Aligned_cols=130 Identities=14% Similarity=0.172 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh--cC----CHHHHHHHHHHHHHCCC---CCChHhHHHHHHHHHhcCC-
Q 009556 93 IDEAMALLAQMQALGFHPSSISYASLIEALAS--VG----RTLEADAIFQEMVCFGF---NPKLRFYNILLRGFLKKGL- 162 (532)
Q Consensus 93 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~--~~----~~~~A~~~~~~~~~~g~---~~~~~~~~~li~~~~~~g~- 162 (532)
+++.+.+++.|.+.|++.+..+|-+..-.... .. ...+|.++|+.|++... .++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34455677778888777777666553333322 22 24557778888876531 2344445555433 2222
Q ss_pred ---hhHHHHHHHHHHHcCCCcCHH-HHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCcCHHhHHHHH
Q 009556 163 ---LGLGSRLLMVMEDMGICRNQE-TYEILLDYHVNAGR---LDDTWLIINEMRSKGFQLNSFVYGKVI 224 (532)
Q Consensus 163 ---~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~~ll 224 (532)
.+.+..+|+.+.+.|...+.. .+.+-+-++..... ..++.++++.+.+.|+++....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 234555666666655543322 22222222222111 335556666666666666555554443
No 238
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.09 E-value=0.45 Score=46.44 Aligned_cols=132 Identities=15% Similarity=0.082 Sum_probs=97.0
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHH
Q 009556 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGF 157 (532)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 157 (532)
...+.++..+-+.|..+.|+++...-. .-.....+.|+++.|.++.++ ..+...|..|....
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~A 357 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEA 357 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHH
Confidence 347889999999999999998765533 235666788999999887654 35778999999999
Q ss_pred HhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHH
Q 009556 158 LKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAV 237 (532)
Q Consensus 158 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 237 (532)
.+.|+++.|.+.|.+..+ |..|+-.|.-.|+.+.-.++.+.....|- ++....++.-.|+.++..
T Consensus 358 L~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv 422 (443)
T PF04053_consen 358 LRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECV 422 (443)
T ss_dssp HHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHH
T ss_pred HHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHH
Confidence 999999999999987764 67788888889998888888777766642 455555666667777766
Q ss_pred HHHHH
Q 009556 238 GIVEE 242 (532)
Q Consensus 238 ~~~~~ 242 (532)
+++.+
T Consensus 423 ~lL~~ 427 (443)
T PF04053_consen 423 DLLIE 427 (443)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66544
No 239
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.08 E-value=2.1 Score=37.25 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=12.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHH
Q 009556 254 IYNSIIDTFGKYGELVEALEVFEKM 278 (532)
Q Consensus 254 ~~~~li~~~~~~g~~~~A~~~~~~m 278 (532)
.|+-...+|..+|..+.|-..+++.
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHH
Confidence 3444445555555555555444443
No 240
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.04 E-value=1.9 Score=42.80 Aligned_cols=162 Identities=22% Similarity=0.121 Sum_probs=101.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHH------HHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCcCHHh
Q 009556 150 YNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQE------TYEILLDYHVN----AGRLDDTWLIINEMRSKGFQLNSFV 219 (532)
Q Consensus 150 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~------~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~ 219 (532)
+..++....-.||-+.+++.+.+..+.+--..+. .|...+..++. ..+.+.|.++++.+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 4556666666777777777777655432112222 23444443333 44678888888888876 556555
Q ss_pred HHHH-HHHHHcCCChHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 009556 220 YGKV-IGLYRDNGMWKKAVGIVEEIREMGL---SLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIR 295 (532)
Q Consensus 220 ~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 295 (532)
|... .+.+...|+.++|++.|+....... ......+--+...+.-.+++++|.+.|..+.+..- .+...|.-+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-cHHHHHHHHHH
Confidence 5433 3567778899999999887653211 12234455566667888999999999999987522 23344443333
Q ss_pred -HHHHcCCH-------HHHHHHHHHHH
Q 009556 296 -WHCKAGDV-------AKALELFTQMQ 314 (532)
Q Consensus 296 -~~~~~g~~-------~~A~~~~~~m~ 314 (532)
++...|+. ++|.++|.+..
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 34456766 88888888865
No 241
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.98 E-value=1.3 Score=34.38 Aligned_cols=63 Identities=21% Similarity=0.228 Sum_probs=34.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 009556 395 FCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGI 458 (532)
Q Consensus 395 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 458 (532)
....+......|.-+.-.++..++.+.+ .++....-.+..+|.+.|+..++.+++.++-+.|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 4444555666666666666666665432 55666666666666666666666666666666654
No 242
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.97 E-value=0.75 Score=41.74 Aligned_cols=155 Identities=10% Similarity=-0.039 Sum_probs=99.4
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc---CCCCCHhHHHHHHHHHHhcCCcc
Q 009556 298 CKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDR---GHGKIGAIYAILVDIYGQYGRFR 374 (532)
Q Consensus 298 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~ 374 (532)
...|++.+|-..++++.+. .+.|...+.-.=.+|.-.|+.+.-...++++... +.|....+-..+.-++..+|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3567778887788887764 4556666666677888888888888888877754 22222333344455556788888
Q ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009556 375 DPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPE---GIEPNLVMLNVLINAFGVAGKYKEALSVYH 451 (532)
Q Consensus 375 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 451 (532)
+|++.-++..+.+ +.|...-.++...+.-.|+..++.++..+-... +.-.-..-|-...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 8888888777654 445556666777777778888888876654432 101111223333444556688888888887
Q ss_pred HHH
Q 009556 452 LMK 454 (532)
Q Consensus 452 ~m~ 454 (532)
.=+
T Consensus 272 ~ei 274 (491)
T KOG2610|consen 272 REI 274 (491)
T ss_pred HHH
Confidence 543
No 243
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.96 E-value=2.9 Score=38.32 Aligned_cols=123 Identities=17% Similarity=0.148 Sum_probs=71.0
Q ss_pred HHcCChHHHHHHHHHHHHcC--CCCCHh-----HHHHHHHHHHhcC-CHHHHHHHHHHHHHC--------CCCCCh----
Q 009556 88 CKLGDIDEAMALLAQMQALG--FHPSSI-----SYASLIEALASVG-RTLEADAIFQEMVCF--------GFNPKL---- 147 (532)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~~--~~~~~~-----~~~~li~~~~~~~-~~~~A~~~~~~~~~~--------g~~~~~---- 147 (532)
.+.|+++.|..++.+..... ..|+.. .+-.+.......+ +++.|..++++..+. ...++.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 47799999999999877643 123221 1222333334455 888887777765432 112222
Q ss_pred -HhHHHHHHHHHhcCChh---HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 009556 148 -RFYNILLRGFLKKGLLG---LGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSK 211 (532)
Q Consensus 148 -~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 211 (532)
.++..++.+|...+..+ .|.++++.+..... -.+..+..-+..+.+.++.+.+.+.+.+|...
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~-~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYG-NKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 34556666776666544 44555555543322 22445555566666677777777777777765
No 244
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.93 E-value=2.4 Score=37.29 Aligned_cols=82 Identities=17% Similarity=0.126 Sum_probs=55.5
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC---HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHH
Q 009556 75 FSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPS---SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYN 151 (532)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~ 151 (532)
|-...|+.-+..+ +.|++++|.+.|+.+..+. +-+ ..+.-.++.++-+.++++.|+...++..+.-..-...-|.
T Consensus 33 p~~~LY~~g~~~L-~~gn~~~A~~~fe~l~~~~-p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~ 110 (254)
T COG4105 33 PASELYNEGLTEL-QKGNYEEAIKYFEALDSRH-PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYA 110 (254)
T ss_pred CHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHH
Confidence 4455677666654 7799999999999998763 333 3455566777888999999999999888653222223344
Q ss_pred HHHHHHH
Q 009556 152 ILLRGFL 158 (532)
Q Consensus 152 ~li~~~~ 158 (532)
.-|.+++
T Consensus 111 ~YlkgLs 117 (254)
T COG4105 111 YYLKGLS 117 (254)
T ss_pred HHHHHHH
Confidence 4444444
No 245
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.84 E-value=0.74 Score=35.53 Aligned_cols=91 Identities=16% Similarity=0.112 Sum_probs=62.8
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh---HhHHHHHHHHHhcCC
Q 009556 86 YCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKL---RFYNILLRGFLKKGL 162 (532)
Q Consensus 86 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~---~~~~~li~~~~~~g~ 162 (532)
+++..|+++.|++.|.+....- +.+...||.-.+++.-.|+.++|++=+++..+..-.... ..|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4567888888988888877652 556778888888888888888888888887764322222 223333445566677
Q ss_pred hhHHHHHHHHHHHcC
Q 009556 163 LGLGSRLLMVMEDMG 177 (532)
Q Consensus 163 ~~~A~~~~~~m~~~~ 177 (532)
.+.|..=|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777777776666554
No 246
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.78 E-value=3.8 Score=38.77 Aligned_cols=75 Identities=19% Similarity=0.233 Sum_probs=32.8
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHhc---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 009556 222 KVIGLYRDNGMWKKAVGIVEEIREMG---LSLDRQIYNSIIDTFGK---YGELVEALEVFEKMQQESIRPDIVTWNSLIR 295 (532)
Q Consensus 222 ~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 295 (532)
.++-+|....+++...++.+.+.... +.....+-....-++.+ .|+.++|++++..+......++..+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 44444555555665555555555431 11111112222233333 4555555555555433333344444444443
Q ss_pred H
Q 009556 296 W 296 (532)
Q Consensus 296 ~ 296 (532)
.
T Consensus 226 I 226 (374)
T PF13281_consen 226 I 226 (374)
T ss_pred H
Confidence 3
No 247
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.58 E-value=1.2 Score=40.40 Aligned_cols=164 Identities=12% Similarity=0.033 Sum_probs=111.6
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHccCCH
Q 009556 263 GKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIF----ITIISCLGELGKW 338 (532)
Q Consensus 263 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~----~~ll~~~~~~~~~ 338 (532)
-..|+..+|-..++++.+. .+.|...++.-=.+|.-+|+.+.-...++++... ..+|...| ....-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3567888888888888876 4558888888888999999999999999998753 23333222 2333455688999
Q ss_pred HHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHH
Q 009556 339 DVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPS---GSMFCILANAYAQQGLCEQTVKVL 415 (532)
Q Consensus 339 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~ 415 (532)
++|++.-++..+.+ +.|.-.-.+....+...|++.++.+...+-...=-..+ ..-|-...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999999988876 56777777888888899999999887765432100000 111222223345568999999999
Q ss_pred HHhc-cCCCCCCHHH
Q 009556 416 QLME-PEGIEPNLVM 429 (532)
Q Consensus 416 ~~m~-~~~~~p~~~~ 429 (532)
+.-+ ..--+.|.+.
T Consensus 271 D~ei~k~l~k~Da~a 285 (491)
T KOG2610|consen 271 DREIWKRLEKDDAVA 285 (491)
T ss_pred HHHHHHHhhccchhh
Confidence 8543 3322444433
No 248
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.53 E-value=0.97 Score=34.93 Aligned_cols=91 Identities=15% Similarity=0.055 Sum_probs=57.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHH---HHHHHHHHHhcCC
Q 009556 121 ALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQET---YEILLDYHVNAGR 197 (532)
Q Consensus 121 ~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~---~~~li~~~~~~~~ 197 (532)
+++..|+++.|++.|.+.+..- +.....||.-..++.-.|+.++|++=+++..+..-..+... |..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4567788888888888777643 45667788777777778888887777777666432222222 2222334555666
Q ss_pred hHHHHHHHHHHHHCC
Q 009556 198 LDDTWLIINEMRSKG 212 (532)
Q Consensus 198 ~~~a~~~~~~m~~~~ 212 (532)
.+.|..-|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 666666666655554
No 249
>PRK11906 transcriptional regulator; Provisional
Probab=94.26 E-value=5.4 Score=38.53 Aligned_cols=117 Identities=13% Similarity=0.056 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHHHc-CCCCC-HhHHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcC
Q 009556 93 IDEAMALLAQMQAL-GFHPS-SISYASLIEALAS---------VGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKG 161 (532)
Q Consensus 93 ~~~A~~~~~~m~~~-~~~~~-~~~~~~li~~~~~---------~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 161 (532)
.+.|+.+|.+.... ...|+ ...|..+..++.. .....+|.++-+...+.+ +.|......+..+..-.|
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 45677777777721 12333 3334333333221 123445666666666665 456666666666666666
Q ss_pred ChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 009556 162 LLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSK 211 (532)
Q Consensus 162 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 211 (532)
+++.|..+|++....++ -...+|-.....+.-.|+.++|.+.+++..+.
T Consensus 353 ~~~~a~~~f~rA~~L~P-n~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 353 QAKVSHILFEQAKIHST-DIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred chhhHHHHHHHHhhcCC-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 67777777777666432 22334444444555566677776666665443
No 250
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.23 E-value=0.21 Score=30.62 Aligned_cols=39 Identities=26% Similarity=0.296 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHH
Q 009556 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASL 118 (532)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 118 (532)
.|..+...|.+.|++++|+++|+++.+.. +-|...+..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHh
Confidence 35556666666777777777777666653 3344444433
No 251
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.21 E-value=0.64 Score=41.82 Aligned_cols=79 Identities=19% Similarity=0.315 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHh-----CCCCCCHHHHHH
Q 009556 428 VMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES-----SGCTPDRKARQI 502 (532)
Q Consensus 428 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~t~~~ 502 (532)
.++..++..+...|+.+.+.+.++++.... +-|...|..++.+|.+.|+...|+..|+++.+ .|+.|-..+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345667777777777777777777777653 23666777788888888887777777777764 577777777776
Q ss_pred HHHHH
Q 009556 503 LQSAL 507 (532)
Q Consensus 503 l~~a~ 507 (532)
..+++
T Consensus 233 y~~~~ 237 (280)
T COG3629 233 YEEIL 237 (280)
T ss_pred HHHHh
Confidence 66663
No 252
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.09 E-value=2.2 Score=33.19 Aligned_cols=63 Identities=27% Similarity=0.361 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCC
Q 009556 185 YEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGL 248 (532)
Q Consensus 185 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 248 (532)
....++.+.+.|+-++-.+++.++.. .-.+++.....+..+|.+.|+..++.+++.++.+.|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34445555666666666666666543 2234555555556666666666666666666655553
No 253
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.04 E-value=4.4 Score=36.49 Aligned_cols=29 Identities=21% Similarity=0.159 Sum_probs=13.9
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 009556 251 DRQIYNSIIDTFGKYGELVEALEVFEKMQ 279 (532)
Q Consensus 251 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 279 (532)
|...-..+...+...|+.++|.+.+-.+.
T Consensus 235 d~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 235 DVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444445555555555555444443
No 254
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.92 E-value=11 Score=40.72 Aligned_cols=86 Identities=12% Similarity=0.047 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHH--HHHHHHH
Q 009556 358 AIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLV--MLNVLIN 435 (532)
Q Consensus 358 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~ 435 (532)
..|.+..+.+...+.+++|.-.|+..-+ ....+.+|..+|++.+|+.+..++... -|.. +-..|+.
T Consensus 940 ~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s 1007 (1265)
T KOG1920|consen 940 VIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVS 1007 (1265)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHH
Confidence 3444555555566677777666665422 233456777778888888777776532 1222 2256677
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 009556 436 AFGVAGKYKEALSVYHLMKD 455 (532)
Q Consensus 436 ~~~~~g~~~~A~~~~~~m~~ 455 (532)
-+...+++-+|-++..+...
T Consensus 1008 ~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1008 RLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHcccchhHHHHHHHHhc
Confidence 77778888887777766554
No 255
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.58 E-value=2.2 Score=37.87 Aligned_cols=96 Identities=22% Similarity=0.095 Sum_probs=69.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC---HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC-ChHhHHHH
Q 009556 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPS---SISYASLIEALASVGRTLEADAIFQEMVCFG-FNP-KLRFYNIL 153 (532)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g-~~~-~~~~~~~l 153 (532)
.|+.-++.+ +.|++.+|.+.|....+.. +.+ ...+--|..++...|++++|..+|..+.+.- -.| -+..+--|
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 588777765 6688999999999888773 222 3356667888889999999999888887642 112 23556667
Q ss_pred HHHHHhcCChhHHHHHHHHHHHc
Q 009556 154 LRGFLKKGLLGLGSRLLMVMEDM 176 (532)
Q Consensus 154 i~~~~~~g~~~~A~~~~~~m~~~ 176 (532)
..+..+.|+.++|...|+++.+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 77777788888888888877764
No 256
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.40 E-value=3.9 Score=33.76 Aligned_cols=134 Identities=11% Similarity=0.087 Sum_probs=70.9
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 009556 98 ALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMG 177 (532)
Q Consensus 98 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 177 (532)
+..+.+.+.+++|+...+..+++.+.+.|++....+++ ..++-+|.......+-.+.. ....+.++=-+|..+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll----q~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL----QYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----hhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH-
Confidence 44556667778888888888888888888766554443 33444544443333322221 222233332233221
Q ss_pred CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHH
Q 009556 178 ICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIRE 245 (532)
Q Consensus 178 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 245 (532)
=...+..+++.+...|++-+|+++.+..... +......++.+..+.++...-..+++-..+
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0114556667777777777777777664322 222234455555555555444444444443
No 257
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.35 E-value=5.3 Score=35.23 Aligned_cols=71 Identities=14% Similarity=-0.000 Sum_probs=38.9
Q ss_pred HhcCCHHHHHHHHHHHHHCC--CCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 009556 123 ASVGRTLEADAIFQEMVCFG--FNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHV 193 (532)
Q Consensus 123 ~~~~~~~~A~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 193 (532)
.+.|++++|.+.|+.+..+. -+-...+--.++-++-+.++.+.|+..+++....-+......|...|.+++
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 35677777777777776542 111233444555566666777777766666665433333334444444443
No 258
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.19 E-value=6.9 Score=36.07 Aligned_cols=128 Identities=12% Similarity=0.264 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHCCCCcCHHhHHHHHHHHHc--CC----ChHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHhccCC--
Q 009556 199 DDTWLIINEMRSKGFQLNSFVYGKVIGLYRD--NG----MWKKAVGIVEEIREMGL---SLDRQIYNSIIDTFGKYGE-- 267 (532)
Q Consensus 199 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~-- 267 (532)
++...+++.|.+.|+.-+..+|.+..-.... .. ....+..+|+.|++... .++..++..++.. ...+
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3445566777777777666665543332222 11 24456667777766532 2233444444333 2222
Q ss_pred --HHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009556 268 --LVEALEVFEKMQQESIRPDI--VTWNSLIRWHCKAGD--VAKALELFTQMQEQGFYPDPKIFITI 328 (532)
Q Consensus 268 --~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~~~~~~~~~l 328 (532)
.+.++.+|+.+.+.|+..+. .....++.......+ ..++.++++.+.+.|+++....|..+
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 34455666666665554332 222222222211111 34566677777777766665555443
No 259
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.15 E-value=0.37 Score=29.46 Aligned_cols=28 Identities=18% Similarity=0.414 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009556 114 SYASLIEALASVGRTLEADAIFQEMVCF 141 (532)
Q Consensus 114 ~~~~li~~~~~~~~~~~A~~~~~~~~~~ 141 (532)
++..+...+...|++++|.++|+++.+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445555566666666666666666554
No 260
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.11 E-value=6.9 Score=35.85 Aligned_cols=165 Identities=14% Similarity=0.117 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHccCCHH---HHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHH
Q 009556 323 KIFITIISCLGELGKWD---VIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILA 399 (532)
Q Consensus 323 ~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 399 (532)
.++..++.++...+..+ +|..+++.+... .+..+.++-.-++.+.+.++.+++.+.+.+|...-.. ....+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHHHH
Confidence 34556666776666544 444455555332 2333555555666666678888888888888765321 223344444
Q ss_pred HHHHh--cCCHHHHHHHHHHhccCCCCCCHH-HHH-HHHH---HHHhcC------CHHHHHHHHHHHHH-CCCCCCHHHH
Q 009556 400 NAYAQ--QGLCEQTVKVLQLMEPEGIEPNLV-MLN-VLIN---AFGVAG------KYKEALSVYHLMKD-IGISPDLVTY 465 (532)
Q Consensus 400 ~~~~~--~g~~~~A~~~~~~m~~~~~~p~~~-~~~-~li~---~~~~~g------~~~~A~~~~~~m~~-~~~~p~~~~~ 465 (532)
..+.. ......|...+..+....+.|... ... .++. .....+ +.+...++++...+ .+.+.+..+-
T Consensus 163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~ 242 (278)
T PF08631_consen 163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA 242 (278)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 44421 123345555555554433344332 111 1111 111111 14444455553322 2223333332
Q ss_pred H---HH----HHHHHhcCCcChHHHHHHHHH
Q 009556 466 S---TL----MKAFIRAKKFHKVPEIYKQME 489 (532)
Q Consensus 466 ~---~l----~~~~~~~g~~~~a~~~~~~m~ 489 (532)
. +| ...+.+.+++++|.+.|+-..
T Consensus 243 ~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 243 SAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 2 22 344567899999999988554
No 261
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.04 E-value=1.6 Score=36.68 Aligned_cols=64 Identities=14% Similarity=0.214 Sum_probs=41.9
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009556 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPS--SISYASLIEALASVGRTLEADAIFQEMVC 140 (532)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 140 (532)
...+..+...|++.|+.++|++.|.++.+....+. ...+-.+|+.....+++..+.....+...
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34566777777777777777777777776543333 23456667777777777777766665543
No 262
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.90 E-value=4 Score=32.52 Aligned_cols=81 Identities=19% Similarity=0.149 Sum_probs=54.7
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHH
Q 009556 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALG--FHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (532)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (532)
..|+.- ....+.|++++|++.|+.+..+- -+-....-..++.++.+.+++++|...+++.++....--..-|...+.
T Consensus 12 ~ly~~a-~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 12 ELYQEA-QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHH-HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 344443 44457899999999999988772 112344566788889999999999999999888753222344555555
Q ss_pred HHHh
Q 009556 156 GFLK 159 (532)
Q Consensus 156 ~~~~ 159 (532)
+++.
T Consensus 91 gL~~ 94 (142)
T PF13512_consen 91 GLSY 94 (142)
T ss_pred HHHH
Confidence 5443
No 263
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.89 E-value=1.4 Score=39.67 Aligned_cols=82 Identities=17% Similarity=0.184 Sum_probs=67.7
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCCcCHHHHH
Q 009556 112 SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMED-----MGICRNQETYE 186 (532)
Q Consensus 112 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~~~ 186 (532)
..++..++..+...|+++.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 4467788888888999999999999988776 56888899999999999999999998888765 48888888888
Q ss_pred HHHHHHHh
Q 009556 187 ILLDYHVN 194 (532)
Q Consensus 187 ~li~~~~~ 194 (532)
.......+
T Consensus 232 ~y~~~~~~ 239 (280)
T COG3629 232 LYEEILRQ 239 (280)
T ss_pred HHHHHhcc
Confidence 77777433
No 264
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.80 E-value=4.7 Score=33.11 Aligned_cols=53 Identities=23% Similarity=0.328 Sum_probs=23.0
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHhH-HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009556 88 CKLGDIDEAMALLAQMQALGFHPSSIS-YASLIEALASVGRTLEADAIFQEMVC 140 (532)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~li~~~~~~~~~~~A~~~~~~~~~ 140 (532)
.+.+..++|+.-|..+.+.|...-+.. ...........|+...|...|+++-.
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~ 122 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAA 122 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhc
Confidence 344555555555555555443221111 11122233344555555555555443
No 265
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=92.76 E-value=11 Score=37.42 Aligned_cols=367 Identities=13% Similarity=0.094 Sum_probs=184.8
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH-hcCCHHHHHHHHHHHHHC-CCC-CChHhHHHHHHHHHhcCChh
Q 009556 88 CKLGDIDEAMALLAQMQALGFHPSSISYASLIEALA-SVGRTLEADAIFQEMVCF-GFN-PKLRFYNILLRGFLKKGLLG 164 (532)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~-~~~~~~~A~~~~~~~~~~-g~~-~~~~~~~~li~~~~~~g~~~ 164 (532)
.+.|..+.+.++|++-... ++.+...|...+.-+. ..|+.+.....|+..... |.. -....|...|..-..++++.
T Consensus 90 ~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k 168 (577)
T KOG1258|consen 90 YKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWK 168 (577)
T ss_pred HHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHH
Confidence 5679999999999998764 5677778877776555 457888888899888764 322 24566888888888899999
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHH---hc------CChHHHHHHHHHHHHC---C-CCcCHHhHHHHHHHH-HcC
Q 009556 165 LGSRLLMVMEDMGICRNQETYEILLDYHV---NA------GRLDDTWLIINEMRSK---G-FQLNSFVYGKVIGLY-RDN 230 (532)
Q Consensus 165 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~---~~------~~~~~a~~~~~~m~~~---~-~~~~~~~~~~ll~~~-~~~ 230 (532)
....+++++.+. ....|+..-.-|. +. ...+++.++-.....+ + ..+.......-+.-- ...
T Consensus 169 ~v~~iyeRilei----P~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s 244 (577)
T KOG1258|consen 169 RVANIYERILEI----PLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPS 244 (577)
T ss_pred HHHHHHHHHHhh----hhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCcc
Confidence 999999999884 2223333333222 12 1233333332222211 0 000111111111000 001
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC---C----CCCHHHHHHHHHHHHHcCCH
Q 009556 231 GMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQES---I----RPDIVTWNSLIRWHCKAGDV 303 (532)
Q Consensus 231 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~----~p~~~~~~~li~~~~~~g~~ 303 (532)
+..+++..+..+... .--.++-..-...+....|+.-..+. + .++..+|..-+.--...|++
T Consensus 245 ~~l~~~~~~l~~~~~-----------~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~ 313 (577)
T KOG1258|consen 245 KSLTEEKTILKRIVS-----------IHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDF 313 (577)
T ss_pred chhhHHHHHHHHHHH-----------HHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccH
Confidence 111111111111110 01112222223333333444333321 1 22456677777777777888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHH
Q 009556 304 AKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAAL 383 (532)
Q Consensus 304 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 383 (532)
+.+.-+|++....- ..=...|-..+.-....|+.+.+..++....+.-++..+.+--.-....-..|+++.|..+++.+
T Consensus 314 ~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i 392 (577)
T KOG1258|consen 314 SRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRI 392 (577)
T ss_pred HHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 88777777765310 00112222233333344777777766666555433322222211112223456778888888777
Q ss_pred HHcCCCCCHH-HHHHHHHHHHhcCCHHHHH---HHHHHhccCCCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHH
Q 009556 384 KLEGLQPSGS-MFCILANAYAQQGLCEQTV---KVLQLMEPEGIEPNLVMLNVLIN-----AFGVAGKYKEALSVYHLMK 454 (532)
Q Consensus 384 ~~~~~~~~~~-~~~~li~~~~~~g~~~~A~---~~~~~m~~~~~~p~~~~~~~li~-----~~~~~g~~~~A~~~~~~m~ 454 (532)
...- |+.. .-..-+....+.|+.+.+. +++....... -+......+.- .+.-.++.+.|..++.++.
T Consensus 393 ~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~--~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~ 468 (577)
T KOG1258|consen 393 ESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK--ENNGILEKLYVKFARLRYKIREDADLARIILLEAN 468 (577)
T ss_pred HhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc--cCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhh
Confidence 6653 3322 1112233444566666665 3333333221 12222222221 2333567777888887777
Q ss_pred HCCCCCCHHHHHHHHHHHHhcC
Q 009556 455 DIGISPDLVTYSTLMKAFIRAK 476 (532)
Q Consensus 455 ~~~~~p~~~~~~~l~~~~~~~g 476 (532)
+. ++++...|..++..+...+
T Consensus 469 ~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 469 DI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred hc-CCccHHHHHHHHHHHHhCC
Confidence 64 4556666777766665554
No 266
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.70 E-value=11 Score=36.88 Aligned_cols=56 Identities=16% Similarity=0.055 Sum_probs=24.1
Q ss_pred HHHHHHhcCCcccHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 009556 363 LVDIYGQYGRFRDPEECIAALKLEGLQ-PSGSMFCILANAYAQQGLCEQTVKVLQLM 418 (532)
Q Consensus 363 li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m 418 (532)
+..+..+.|+.++|.+.++++.+.... .+......|+.++...+.+.++..++.+-
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 334444445555555555544433211 12223334444444444444444444443
No 267
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.66 E-value=2.6 Score=37.45 Aligned_cols=14 Identities=0% Similarity=-0.068 Sum_probs=5.9
Q ss_pred ChHHHHHHHHHHHH
Q 009556 197 RLDDTWLIINEMRS 210 (532)
Q Consensus 197 ~~~~a~~~~~~m~~ 210 (532)
++..|...|....+
T Consensus 156 dy~~A~~~F~~fi~ 169 (262)
T COG1729 156 DYAEAEQAFQAFIK 169 (262)
T ss_pred CHHHHHHHHHHHHH
Confidence 34444444444433
No 268
>PRK11906 transcriptional regulator; Provisional
Probab=92.50 E-value=3.8 Score=39.58 Aligned_cols=115 Identities=10% Similarity=0.014 Sum_probs=82.9
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHH
Q 009556 90 LGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRL 169 (532)
Q Consensus 90 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 169 (532)
..+..+|.++.++..+.+ +.|+.....+..++...++++.|..+|++....+ +....+|......+.-.|+.++|.+.
T Consensus 317 ~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~ 394 (458)
T PRK11906 317 ELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARIC 394 (458)
T ss_pred hHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 345667888888888887 7788998888888888999999999999999875 34456666666667778999999999
Q ss_pred HHHHHHcCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 009556 170 LMVMEDMGICR-NQETYEILLDYHVNAGRLDDTWLIINE 207 (532)
Q Consensus 170 ~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~ 207 (532)
+++..+..+.. ........++.|+. ...++|+++|-+
T Consensus 395 i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 432 (458)
T PRK11906 395 IDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNIKLYYK 432 (458)
T ss_pred HHHHhccCchhhHHHHHHHHHHHHcC-CchhhhHHHHhh
Confidence 99977643222 22223333434544 345666666543
No 269
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.41 E-value=19 Score=39.12 Aligned_cols=31 Identities=13% Similarity=0.280 Sum_probs=20.2
Q ss_pred CCChHhHHHHHHHHHhcC--ChhHHHHHHHHHHH
Q 009556 144 NPKLRFYNILLRGFLKKG--LLGLGSRLLMVMED 175 (532)
Q Consensus 144 ~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~ 175 (532)
.|+ .....+|..|.+.+ .++.|+....+...
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 344 44566777888777 66677766666654
No 270
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.37 E-value=0.35 Score=28.05 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=15.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHH
Q 009556 80 YNKSIQYCCKLGDIDEAMALLAQM 103 (532)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m 103 (532)
|+.|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 556666666777777777766663
No 271
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.26 E-value=16 Score=37.98 Aligned_cols=142 Identities=15% Similarity=0.232 Sum_probs=87.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCCh
Q 009556 84 IQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLL 163 (532)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 163 (532)
.+.+.+.|++++|..-|-+-... +.| ..+|.-+....+..+-...++.+.+.|+ .+...-+.|+.+|.+.++.
T Consensus 375 gd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~ 447 (933)
T KOG2114|consen 375 GDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDV 447 (933)
T ss_pred HHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcch
Confidence 34456789999999887665532 122 2356666677777777888888888885 5666678899999999998
Q ss_pred hHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHH
Q 009556 164 GLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEI 243 (532)
Q Consensus 164 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 243 (532)
+.-.+..+... .|.. ..-....+..+.+.+-.++|.-+-.+... .......+ +-..+++++|++.+..+
T Consensus 448 ~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 448 EKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 88777666544 2221 11234456666666666666655444322 22222222 23455666666665543
No 272
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.19 E-value=15 Score=37.59 Aligned_cols=90 Identities=9% Similarity=0.065 Sum_probs=73.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009556 390 PSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLM 469 (532)
Q Consensus 390 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 469 (532)
....+.+--+.-+...|+..+|.++-.+.+ -||-..|..-+.+++..+++++-+++-+.+. .+.-|.-..
T Consensus 682 f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFV 751 (829)
T KOG2280|consen 682 FVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFV 751 (829)
T ss_pred cccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHH
Confidence 344456666777888999999999998887 7899999999999999999998877655443 244577889
Q ss_pred HHHHhcCCcChHHHHHHHHH
Q 009556 470 KAFIRAKKFHKVPEIYKQME 489 (532)
Q Consensus 470 ~~~~~~g~~~~a~~~~~~m~ 489 (532)
.+|.+.|+.++|.+++-+..
T Consensus 752 e~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 752 EACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred HHHHhcccHHHHhhhhhccC
Confidence 99999999999999987764
No 273
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.17 E-value=5.5 Score=32.43 Aligned_cols=50 Identities=16% Similarity=0.206 Sum_probs=22.6
Q ss_pred hcCCHHHHHHHHHHhccCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHH
Q 009556 404 QQGLCEQTVKVLQLMEPEGIEPNLVMLN-VLINAFGVAGKYKEALSVYHLMKD 455 (532)
Q Consensus 404 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~ 455 (532)
+.++.+++..++..+.-. .|...... .-...+...|++.+|.++|+++.+
T Consensus 22 ~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 334555555555554432 23222211 112334455566666666655544
No 274
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.13 E-value=5.9 Score=32.69 Aligned_cols=21 Identities=29% Similarity=0.303 Sum_probs=9.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHH
Q 009556 292 SLIRWHCKAGDVAKALELFTQ 312 (532)
Q Consensus 292 ~li~~~~~~g~~~~A~~~~~~ 312 (532)
.++..+...|++-+|+++.+.
T Consensus 94 ~iievLL~~g~vl~ALr~ar~ 114 (167)
T PF07035_consen 94 EIIEVLLSKGQVLEALRYARQ 114 (167)
T ss_pred HHHHHHHhCCCHHHHHHHHHH
Confidence 344444444444444444443
No 275
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=91.91 E-value=2.1 Score=40.22 Aligned_cols=97 Identities=14% Similarity=-0.015 Sum_probs=73.7
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHH
Q 009556 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (532)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (532)
..+++.+.-.|.+.+++..|++..+.....+ ++|+...-.-.++|...|+++.|+..|+.+.+.. +.|-.+-+-|+.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l 334 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKL 334 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3457778888999999999999999999887 7888888888999999999999999999999864 3344444555554
Q ss_pred HHhcCChhH-HHHHHHHHHH
Q 009556 157 FLKKGLLGL-GSRLLMVMED 175 (532)
Q Consensus 157 ~~~~g~~~~-A~~~~~~m~~ 175 (532)
--+..+..+ ..++|..|..
T Consensus 335 ~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 444444333 3566666654
No 276
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=91.75 E-value=8.2 Score=33.54 Aligned_cols=167 Identities=18% Similarity=0.149 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-
Q 009556 253 QIYNSIIDTFGKYGELVEALEVFEKMQQE-SIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIIS- 330 (532)
Q Consensus 253 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~- 330 (532)
..+......+...++...+...+...... ........+......+...+++..+.+.+.........+. ........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHH
Confidence 34444445555555555555555544431 1122333444444445555555555555555554322221 11111111
Q ss_pred HHHccCCHHHHHHHHHHHHhcCC--CCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 009556 331 CLGELGKWDVIKKNFENMKDRGH--GKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLC 408 (532)
Q Consensus 331 ~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 408 (532)
.+...|+++.+...+........ ......+......+...++.+.+...+..............+..+...+...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 44455555555555555433111 0111222222222334444444444444444332110233344444444444445
Q ss_pred HHHHHHHHHhcc
Q 009556 409 EQTVKVLQLMEP 420 (532)
Q Consensus 409 ~~A~~~~~~m~~ 420 (532)
+.|...+.....
T Consensus 219 ~~a~~~~~~~~~ 230 (291)
T COG0457 219 EEALEYYEKALE 230 (291)
T ss_pred HHHHHHHHHHHh
Confidence 555555444443
No 277
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=91.75 E-value=5.7 Score=31.68 Aligned_cols=79 Identities=9% Similarity=-0.125 Sum_probs=53.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC--CCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc
Q 009556 118 LIEALASVGRTLEADAIFQEMVCFGF--NPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNA 195 (532)
Q Consensus 118 li~~~~~~~~~~~A~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 195 (532)
-.....+.|++++|.+.|+.+..+-. +-.....-.|+.+|.+.|++++|...+++..+..+.....-|...+.+++..
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 34445577888888888888876521 2234555667888888888888888888888776544445666666665543
Q ss_pred C
Q 009556 196 G 196 (532)
Q Consensus 196 ~ 196 (532)
.
T Consensus 96 ~ 96 (142)
T PF13512_consen 96 E 96 (142)
T ss_pred H
Confidence 3
No 278
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.68 E-value=3.3 Score=34.82 Aligned_cols=60 Identities=17% Similarity=0.108 Sum_probs=32.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009556 395 FCILANAYAQQGLCEQTVKVLQLMEPEGIEPNL--VMLNVLINAFGVAGKYKEALSVYHLMK 454 (532)
Q Consensus 395 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~ 454 (532)
+..+..-|.+.|+.+.|.+.+.++.+....+.. ..+-.+|+.....+++..+.....+..
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 445555566666666666666665554322222 234455555566666666665555544
No 279
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=91.36 E-value=9.1 Score=33.26 Aligned_cols=189 Identities=18% Similarity=0.116 Sum_probs=85.3
Q ss_pred CCHHHHHHHHHHHHHCCCC-CChHhHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCcCHHHHHHHHHHHHhcCChHHHHH
Q 009556 126 GRTLEADAIFQEMVCFGFN-PKLRFYNILLRGFLKKGLLGLGSRLLMVMEDM-GICRNQETYEILLDYHVNAGRLDDTWL 203 (532)
Q Consensus 126 ~~~~~A~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~ 203 (532)
+....+...+......... .....+......+...+++..+...+...... ........+......+...++...+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3344444444444433211 12344555555555566666665555555431 122333444455555555555666666
Q ss_pred HHHHHHHCCCCcCHHhHHHHHH-HHHcCCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 009556 204 IINEMRSKGFQLNSFVYGKVIG-LYRDNGMWKKAVGIVEEIREMGL--SLDRQIYNSIIDTFGKYGELVEALEVFEKMQQ 280 (532)
Q Consensus 204 ~~~~m~~~~~~~~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 280 (532)
.+.........+ ......... .+...|+++.+...+.+...... ......+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 666555443222 111111112 45555666666666655543211 01222222223334445555555555555544
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009556 281 ESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQE 315 (532)
Q Consensus 281 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 315 (532)
.........+..+...+...++++.|...+.....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 230 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE 230 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh
Confidence 31110233444445555555555555555555544
No 280
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.04 E-value=7.8 Score=31.92 Aligned_cols=122 Identities=12% Similarity=0.059 Sum_probs=47.9
Q ss_pred hcCChhHHHHHHHHHHHcCCCcCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHH-hHHHH--HHHHHcCCChH
Q 009556 159 KKGLLGLGSRLLMVMEDMGICRNQE-TYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSF-VYGKV--IGLYRDNGMWK 234 (532)
Q Consensus 159 ~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~l--l~~~~~~~~~~ 234 (532)
+.+..++|+.-|..+.+.|...-++ ..--......+.|+...|...|++.-.....|-.. -...| .-.+...|.++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 3444555555555555543321111 11112223344555555555555554432222211 00000 11223444444
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 009556 235 KAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQ 280 (532)
Q Consensus 235 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 280 (532)
......+-+-..+-+.-...-..|.-+-.+.|++..|.+.|..+..
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 4444444333332222222333344444445555555555554443
No 281
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.03 E-value=0.0046 Score=50.27 Aligned_cols=52 Identities=15% Similarity=0.227 Sum_probs=23.5
Q ss_pred HHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009556 365 DIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQ 416 (532)
Q Consensus 365 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 416 (532)
..+.+.+.......+++.+...+...+....+.++..|++.+..++..++++
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 15 SAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 3344444444444555555444333344445555555555544444444444
No 282
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.92 E-value=0.63 Score=26.94 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=14.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 009556 430 LNVLINAFGVAGKYKEALSVYHLM 453 (532)
Q Consensus 430 ~~~li~~~~~~g~~~~A~~~~~~m 453 (532)
|+.|...|.+.|++++|.+++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455666666666666666666653
No 283
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=90.84 E-value=7.5 Score=36.06 Aligned_cols=125 Identities=14% Similarity=0.145 Sum_probs=59.6
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC----CCCCCHH-HHH-
Q 009556 223 VIGLYRDNGMWKKAVGIVEEIREMG-----LSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQE----SIRPDIV-TWN- 291 (532)
Q Consensus 223 ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~-~~~- 291 (532)
+..++...+.++++++.|+...+.. ......++..|...|.+..|+++|.-+..+..+. ++. |.. -|.
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~ 206 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRA 206 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHH
Confidence 4445555555566655555554321 1122345666666666666666665544433221 111 111 111
Q ss_pred ----HHHHHHHHcCCHHHHHHHHHHHH----HCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 009556 292 ----SLIRWHCKAGDVAKALELFTQMQ----EQGFYP-DPKIFITIISCLGELGKWDVIKKNFENM 348 (532)
Q Consensus 292 ----~li~~~~~~g~~~~A~~~~~~m~----~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 348 (532)
.|.-++-..|....|.+.-++.. +.|-.+ -......+.+.|...|+.+.+..-|++.
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 23334555566555555555432 233222 1233445555666666666666655554
No 284
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=90.84 E-value=17 Score=35.52 Aligned_cols=164 Identities=12% Similarity=0.108 Sum_probs=85.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHh
Q 009556 81 NKSIQYCCKLGDIDEAMALLAQMQALGFHPSS-ISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLK 159 (532)
Q Consensus 81 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 159 (532)
..++...-+..+.+.-+++-.+..+. .||- ..|..|.. -......+|.++|++..+.|- ...--..... .
T Consensus 172 q~IMq~AWRERnp~aRIkaA~eALei--~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE--~~lg~s~~~~---~ 242 (539)
T PF04184_consen 172 QEIMQKAWRERNPQARIKAAKEALEI--NPDCADAYILLAE--EEASTIVEAEELLRQAVKAGE--ASLGKSQFLQ---H 242 (539)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHh--hhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHH--Hhhchhhhhh---c
Confidence 35566666778888888887777765 3432 22322221 123456788888888776441 0000000000 0
Q ss_pred cCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-cCHHhHHHHHHHHHcCCChHHHHH
Q 009556 160 KGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQ-LNSFVYGKVIGLYRDNGMWKKAVG 238 (532)
Q Consensus 160 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~ 238 (532)
.|. .++.+......+-..+-..+...+-+.|+.++|.+.+.+|.+.... -.......|+.++...+.+.++..
T Consensus 243 ~g~------~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~ 316 (539)
T PF04184_consen 243 HGH------FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQA 316 (539)
T ss_pred ccc------hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHH
Confidence 111 1111111111122223344555666778888888888887654322 133456677777777788887777
Q ss_pred HHHHHHHcCCCC-CHHHHHHHH
Q 009556 239 IVEEIREMGLSL-DRQIYNSII 259 (532)
Q Consensus 239 ~~~~~~~~~~~~-~~~~~~~li 259 (532)
++.+..+...+. -...|+..+
T Consensus 317 lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 317 LLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHHHhccccCCchHHHHHHHHH
Confidence 777765433222 233455433
No 285
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=90.14 E-value=26 Score=36.40 Aligned_cols=220 Identities=15% Similarity=0.133 Sum_probs=91.6
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCC-------HHHHHHHHHHHHHCCCCCChH
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGR-------TLEADAIFQEMVCFGFNPKLR 148 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~-------~~~A~~~~~~~~~~g~~~~~~ 148 (532)
+...| .+|-.|.|+|++++|.++..+.... .......+...+..+....+ -++...-|++..+.....|+.
T Consensus 111 ~~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 111 GDPIW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp TEEHH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred CCccH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 34456 6788889999999999999555443 34455667777888776532 234555555555443222432
Q ss_pred ---hHHHHHHHHHhcCChhHHH-HHHHHHHHcCCCcCHH--HHHHHHHHHHhcC---------ChHHHHHHHHHHHHCCC
Q 009556 149 ---FYNILLRGFLKKGLLGLGS-RLLMVMEDMGICRNQE--TYEILLDYHVNAG---------RLDDTWLIINEMRSKGF 213 (532)
Q Consensus 149 ---~~~~li~~~~~~g~~~~A~-~~~~~m~~~~~~~~~~--~~~~li~~~~~~~---------~~~~a~~~~~~m~~~~~ 213 (532)
+|..+ +++.-...-. .+. .+.. .|-.|.-.-.... .+++..+.+.+.-+..+
T Consensus 189 K~AvY~il----g~cD~~~~~~~~V~---------~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge~~F 255 (613)
T PF04097_consen 189 KRAVYKIL----GRCDLSRRHLPEVA---------RTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGESHF 255 (613)
T ss_dssp HHHHHHHH----HT--CCC-S-TTC-----------SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-GGGC
T ss_pred HHHHHHHH----hcCCccccchHHHh---------CcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhchhhc
Confidence 22222 2222111000 111 1111 2222211111110 11222222222222223
Q ss_pred CcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC-CCCCHHHHHH
Q 009556 214 QLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQES-IRPDIVTWNS 292 (532)
Q Consensus 214 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ 292 (532)
.+ ..........+.-.|++|.|.+.+-. ..+...+.+.+...+..|.-.+-.+... ..+.... -.|....+..
T Consensus 256 ~~-~~~p~~Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~ar 329 (613)
T PF04097_consen 256 NA-GSNPLLYFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFAR 329 (613)
T ss_dssp TT-------HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHH
T ss_pred cc-chhHHHHHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHH
Confidence 33 11122334455678889999888766 2222345555555554443222211111 2222110 0111255777
Q ss_pred HHHHHHHc---CCHHHHHHHHHHHHHC
Q 009556 293 LIRWHCKA---GDVAKALELFTQMQEQ 316 (532)
Q Consensus 293 li~~~~~~---g~~~~A~~~~~~m~~~ 316 (532)
||..|.+. .++.+|++++--+...
T Consensus 330 LI~~Y~~~F~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 330 LIGQYTRSFEITDPREALQYLYLICLF 356 (613)
T ss_dssp HHHHHHHTTTTT-HHHHHHHHHGGGGS
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHc
Confidence 88888773 4677888887766543
No 286
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.08 E-value=2.6 Score=30.69 Aligned_cols=45 Identities=13% Similarity=0.174 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHH
Q 009556 445 EALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQME 489 (532)
Q Consensus 445 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 489 (532)
++.+-++.+....+.|++....+.+++|.+.+++..|.++++-.+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444455555556666666666666666666666666666555
No 287
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=89.22 E-value=0.55 Score=26.79 Aligned_cols=24 Identities=21% Similarity=0.165 Sum_probs=12.5
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHH
Q 009556 109 HPSSISYASLIEALASVGRTLEAD 132 (532)
Q Consensus 109 ~~~~~~~~~li~~~~~~~~~~~A~ 132 (532)
+-|..+|+.+...+...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 334555555555555555555543
No 288
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.01 E-value=2.2 Score=31.36 Aligned_cols=41 Identities=12% Similarity=0.179 Sum_probs=18.8
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHH
Q 009556 449 VYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQME 489 (532)
Q Consensus 449 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 489 (532)
-++.+....+.|++....+.+++|.+.+++..|.++++-.+
T Consensus 32 glN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 32 GLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33344444455555555555555555555555555555554
No 289
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.82 E-value=4 Score=40.41 Aligned_cols=26 Identities=27% Similarity=0.215 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHH
Q 009556 252 RQIYNSIIDTFGKYGELVEALEVFEK 277 (532)
Q Consensus 252 ~~~~~~li~~~~~~g~~~~A~~~~~~ 277 (532)
..-|..|.++..+.+++..|.+.|..
T Consensus 666 ~~Kw~~Lg~~al~~~~l~lA~EC~~~ 691 (794)
T KOG0276|consen 666 EVKWRQLGDAALSAGELPLASECFLR 691 (794)
T ss_pred hHHHHHHHHHHhhcccchhHHHHHHh
Confidence 33444455555555555555444443
No 290
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.75 E-value=7 Score=35.49 Aligned_cols=103 Identities=15% Similarity=0.193 Sum_probs=52.3
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 009556 247 GLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQES---IRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPK 323 (532)
Q Consensus 247 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 323 (532)
|.+.+..+...++..-....+++++...+-++.... ..|+...+ +.++.+ -.-++++++.++..=..-|+-||.+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 333344444444444444555666666555554320 11111111 122222 2235556666666656666666666
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 009556 324 IFITIISCLGELGKWDVIKKNFENMKDR 351 (532)
Q Consensus 324 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 351 (532)
+++.+++.+.+.+++.+|.++...+...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 6666666666666666666665555443
No 291
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.58 E-value=9.4 Score=34.70 Aligned_cols=48 Identities=23% Similarity=0.227 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009556 407 LCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMK 454 (532)
Q Consensus 407 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 454 (532)
+.++++.++..=+..|+-||..+++.+++.+.+.+++.+|.++.-.|.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 455666666655666666666666666666666666666666555444
No 292
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=88.11 E-value=14 Score=33.32 Aligned_cols=146 Identities=10% Similarity=0.124 Sum_probs=88.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCChHhHHHHHHHHHh-cC-ChhHHHHHHHHHHHc-CCCcCHHHHHHHHH
Q 009556 115 YASLIEALASVGRTLEADAIFQEMVC-FGFNPKLRFYNILLRGFLK-KG-LLGLGSRLLMVMEDM-GICRNQETYEILLD 190 (532)
Q Consensus 115 ~~~li~~~~~~~~~~~A~~~~~~~~~-~g~~~~~~~~~~li~~~~~-~g-~~~~A~~~~~~m~~~-~~~~~~~~~~~li~ 190 (532)
|..++. ++....+|+.+|+.... ..+--|..+-..+++.... .+ ....-.++.+-+... +..++..+-..++.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 444443 33445667777763221 2234566666666666655 22 222233333333322 34467777778888
Q ss_pred HHHhcCChHHHHHHHHHHHHC-CCCcCHHhHHHHHHHHHcCCChHHHHHHHHH-----HHHcCCCCCHHHHHHHHHHHh
Q 009556 191 YHVNAGRLDDTWLIINEMRSK-GFQLNSFVYGKVIGLYRDNGMWKKAVGIVEE-----IREMGLSLDRQIYNSIIDTFG 263 (532)
Q Consensus 191 ~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~li~~~~ 263 (532)
.+++.+++..-+++++..... +..-|...|...|+...+.|+..-..++.++ +.+.++..+...-.++-..+.
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~ 289 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFK 289 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHH
Confidence 888888888888888877655 5556788888888888888887766666553 234456666665555554443
No 293
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=88.06 E-value=18 Score=37.11 Aligned_cols=156 Identities=13% Similarity=0.095 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHH
Q 009556 358 AIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAF 437 (532)
Q Consensus 358 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 437 (532)
..|..-+..+..+++.. ....+.+..+-...+...-..++..|.+.|..+.|.++.+.+-..-+ ...-|..-+.-+
T Consensus 373 ~lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~ 448 (566)
T PF07575_consen 373 SLWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWF 448 (566)
T ss_dssp TTHHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred chHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHH
Confidence 34555555555444333 45555554443344555566677777777777777777665543311 123345555566
Q ss_pred HhcCCHHHHHHHHHHHHHC----CCCCCHHHHHH---------------HHHH---HHhcCCcChHHHHHHHHHhCCCCC
Q 009556 438 GVAGKYKEALSVYHLMKDI----GISPDLVTYST---------------LMKA---FIRAKKFHKVPEIYKQMESSGCTP 495 (532)
Q Consensus 438 ~~~g~~~~A~~~~~~m~~~----~~~p~~~~~~~---------------l~~~---~~~~g~~~~a~~~~~~m~~~g~~p 495 (532)
.++|+......+-+.+.+. |...+....+. -..- ..+.|++.+|.+.+-.+.+.++.|
T Consensus 449 ~ra~d~~~v~~i~~~ll~~~~~~~~~~~~~ll~~i~~~~~~~~~L~fla~yreF~~~~~~~~~~~Aa~~Lv~Ll~~~~~P 528 (566)
T PF07575_consen 449 IRAGDYSLVTRIADRLLEEYCNNGEPLDDDLLDNIGSPMLLSQRLSFLAKYREFYELYDEGDFREAASLLVSLLKSPIAP 528 (566)
T ss_dssp H-------------------------------------------------------------------------------
T ss_pred HHCCCHHHHHHHHHHHHHHHhcCCCcccHHHHHHhcchhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHCCCCCc
Confidence 6666666655544444321 21111111111 1111 134588888888888888889999
Q ss_pred CHHHHHHHHHHHHHHhhhhhcc
Q 009556 496 DRKARQILQSALVVLEQRRCKQ 517 (532)
Q Consensus 496 ~~~t~~~l~~a~~~~~~~~~~~ 517 (532)
...-...|.+++--++..+...
T Consensus 529 k~f~~~LL~d~lplL~~~~~~f 550 (566)
T PF07575_consen 529 KSFWPLLLCDALPLLESDEVIF 550 (566)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHhCCCCCcc
Confidence 9988888888887777644443
No 294
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.78 E-value=14 Score=30.22 Aligned_cols=68 Identities=25% Similarity=0.191 Sum_probs=41.6
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHhHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHh
Q 009556 88 CKLGDIDEAMALLAQMQALGFHPSSISY-ASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLK 159 (532)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~-~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 159 (532)
.+.++.+++..+++.+.-. .|..... ..-...+...|++.+|..+|+++.+.+ |.......|+..|..
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLY 89 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHH
Confidence 4567888888888877765 4443332 223345667788888888888876543 444444455555444
No 295
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.67 E-value=38 Score=35.16 Aligned_cols=104 Identities=13% Similarity=0.052 Sum_probs=72.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCC---CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHH
Q 009556 82 KSIQYCCKLGDIDEAMALLAQMQALGFHP---SSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFL 158 (532)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 158 (532)
--|+.+.+.+.+++|++..+.-... .+ -...+...|..+...|++++|-...-.|.. .+..-|...+.-+.
T Consensus 361 Dhi~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~ 434 (846)
T KOG2066|consen 361 DHIDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFA 434 (846)
T ss_pred hhHHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhc
Confidence 3477888999999999888765543 33 234677888999999999999999888873 56666777776666
Q ss_pred hcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 009556 159 KKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVN 194 (532)
Q Consensus 159 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 194 (532)
..+..... +.-++......+...|..++..+..
T Consensus 435 e~~~l~~I---a~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 435 ELDQLTDI---APYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccccchh---hccCCCCCcccCchHHHHHHHHHHH
Confidence 66654433 2233333223456678888887776
No 296
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=87.29 E-value=43 Score=35.40 Aligned_cols=226 Identities=12% Similarity=0.098 Sum_probs=115.1
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCC-------HHHHHHHHHH-HHHcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHH
Q 009556 262 FGKYGELVEALEVFEKMQQESIRPD-------IVTWNSLIRW-HCKAGDVAKALELFTQMQEQ----GFYPDPKIFITII 329 (532)
Q Consensus 262 ~~~~g~~~~A~~~~~~m~~~~~~p~-------~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~----~~~~~~~~~~~ll 329 (532)
.....++++|..++.++...-..|+ ...|+.+-.. ....|++++|.++-+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 3456788888888887765422221 1234433222 23467889999888876643 2333455566667
Q ss_pred HHHHccCCHHHHHHHHHHHHhcCCCCCHhH---HHHH--HHHHHhcCCcc--cHHHHHHHHHHcC--CCC----CHHHHH
Q 009556 330 SCLGELGKWDVIKKNFENMKDRGHGKIGAI---YAIL--VDIYGQYGRFR--DPEECIAALKLEG--LQP----SGSMFC 396 (532)
Q Consensus 330 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l--i~~~~~~g~~~--~a~~~~~~~~~~~--~~~----~~~~~~ 396 (532)
.+..-.|++++|..+..+..+..-.-+... |..+ ...+...|+.. +.+..|....... -.| -..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 777778999999988877765422222222 2222 22344456322 2223333332211 011 122344
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHhccCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHH
Q 009556 397 ILANAYAQQ-GLCEQTVKVLQLMEPEGIEPNLVML--NVLINAFGVAGKYKEALSVYHLMKDIGISP----DLVTYSTLM 469 (532)
Q Consensus 397 ~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~p----~~~~~~~l~ 469 (532)
.++.++.+. +...++..-+.--......|-...+ ..|+......|+.++|...++++......+ +-..-...+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 444444441 1122222222222222222222222 266778888999999999999887543332 222222233
Q ss_pred HHH--HhcCCcChHHHHHHH
Q 009556 470 KAF--IRAKKFHKVPEIYKQ 487 (532)
Q Consensus 470 ~~~--~~~g~~~~a~~~~~~ 487 (532)
+.. ...|+.+.+.....+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 322 245666666555444
No 297
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.83 E-value=1.1 Score=25.24 Aligned_cols=27 Identities=33% Similarity=0.378 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009556 429 MLNVLINAFGVAGKYKEALSVYHLMKD 455 (532)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 455 (532)
+|..+..+|...|++++|...|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455566666666666666666666654
No 298
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=86.69 E-value=0.87 Score=25.97 Aligned_cols=24 Identities=21% Similarity=0.175 Sum_probs=13.1
Q ss_pred CCChHhHHHHHHHHHhcCChhHHH
Q 009556 144 NPKLRFYNILLRGFLKKGLLGLGS 167 (532)
Q Consensus 144 ~~~~~~~~~li~~~~~~g~~~~A~ 167 (532)
+.+...|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 334555555555555555555553
No 299
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.66 E-value=6.6 Score=28.69 Aligned_cols=48 Identities=13% Similarity=0.231 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 009556 303 VAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKD 350 (532)
Q Consensus 303 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 350 (532)
.-++.+-++.+....+.|++....+.+++|.+.+++..|.++++.+..
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344555556666666677777777777777777777777777776653
No 300
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.66 E-value=2 Score=24.18 Aligned_cols=28 Identities=25% Similarity=0.352 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 009556 79 SYNKSIQYCCKLGDIDEAMALLAQMQAL 106 (532)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 106 (532)
+|..+...|...|++++|+..|++..+.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 4555666666666666666666666554
No 301
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=86.35 E-value=6.4 Score=33.74 Aligned_cols=76 Identities=14% Similarity=0.083 Sum_probs=55.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCChHhHHHHHHH
Q 009556 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFG--FNPKLRFYNILLRG 156 (532)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g--~~~~~~~~~~li~~ 156 (532)
.+..++.+.+.+.+.+|+...+.-.+.. +.|...-..+++.+|-.|++++|..-++..-+.. ..+...+|..+|++
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 4566778888899999998888766663 5566677788899999999999887777665432 23445666666654
No 302
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=85.80 E-value=5.5 Score=36.54 Aligned_cols=90 Identities=10% Similarity=-0.021 Sum_probs=56.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCCh
Q 009556 84 IQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLL 163 (532)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 163 (532)
-+.|.++|.+++|++.|....... +.|++++..-..+|.+..++..|..-.......+ ..-+..|.--+.+--..|..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 456889999999999998877653 3488999989999999988887777666655422 11112222222222233445
Q ss_pred hHHHHHHHHHHH
Q 009556 164 GLGSRLLMVMED 175 (532)
Q Consensus 164 ~~A~~~~~~m~~ 175 (532)
.+|.+=++...+
T Consensus 182 ~EAKkD~E~vL~ 193 (536)
T KOG4648|consen 182 MEAKKDCETVLA 193 (536)
T ss_pred HHHHHhHHHHHh
Confidence 555554444444
No 303
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=85.78 E-value=1.4 Score=24.77 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009556 429 MLNVLINAFGVAGKYKEALSVYHLMKD 455 (532)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 455 (532)
.|..+...+...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555566666666666666665554
No 304
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.76 E-value=2.3 Score=25.20 Aligned_cols=27 Identities=37% Similarity=0.524 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009556 428 VMLNVLINAFGVAGKYKEALSVYHLMK 454 (532)
Q Consensus 428 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 454 (532)
.+++.|...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 456677777777777777777777664
No 305
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.68 E-value=16 Score=36.51 Aligned_cols=166 Identities=19% Similarity=0.183 Sum_probs=112.7
Q ss_pred CCChhhHHHHHHH-----HHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH
Q 009556 74 EFSGNSYNKSIQY-----CCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLR 148 (532)
Q Consensus 74 ~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~ 148 (532)
+.++..|..++.. ..-.|+++.|..++..+.+ ..-+.++.-+-++|-.++|+++-. .||.
T Consensus 578 e~nVi~y~l~l~vleyqt~vmrrd~~~a~~vLp~I~k-------~~rt~va~Fle~~g~~e~AL~~s~-------D~d~- 642 (794)
T KOG0276|consen 578 ELNVISYKILLEVLEYQTLVLRRDLEVADGVLPTIPK-------EIRTKVAHFLESQGMKEQALELST-------DPDQ- 642 (794)
T ss_pred ccceEeEeeehHHHHHHHHhhhccccccccccccCch-------hhhhhHHhHhhhccchHhhhhcCC-------Chhh-
Confidence 3455555444433 3456888888876655542 234566777778888887776521 2221
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHH
Q 009556 149 FYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYR 228 (532)
Q Consensus 149 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 228 (532)
-.....+.|+++.|.++..+. .+..-|..|.++..+.+++..|.+.|.+..+ |..|+-.+.
T Consensus 643 ----rFelal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t 703 (794)
T KOG0276|consen 643 ----RFELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYT 703 (794)
T ss_pred ----hhhhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhh
Confidence 123445779999998876554 3667899999999999999999999987654 456777788
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 009556 229 DNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQ 279 (532)
Q Consensus 229 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 279 (532)
..|+.+....+-....+.|.. |. . .-+|...|+++++.+++..-.
T Consensus 704 ~~g~~~~l~~la~~~~~~g~~-N~-A----F~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 704 SSGNAEGLAVLASLAKKQGKN-NL-A----FLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred hcCChhHHHHHHHHHHhhccc-ch-H----HHHHHHcCCHHHHHHHHHhcC
Confidence 888877776676777766642 32 2 234667899999999886653
No 306
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=85.57 E-value=23 Score=30.55 Aligned_cols=159 Identities=12% Similarity=0.031 Sum_probs=76.8
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CcCHHHHHHHHH
Q 009556 112 SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGI-CRNQETYEILLD 190 (532)
Q Consensus 112 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~ 190 (532)
+..||-+.--+...|+++.|.+.|+...+....-+-...|--| ++.--|++..|.+=|...-+.+. .|=...|.-+..
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E 177 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE 177 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 4567777777777777777777777777654222222222222 22234677777665555444321 122223332222
Q ss_pred HHHhcCChHHHHHH-HHHHHHCCCCcCHHhHHHHHHHHH-cCCChHHHHHHHHHHHHcCC------CCCHHHHHHHHHHH
Q 009556 191 YHVNAGRLDDTWLI-INEMRSKGFQLNSFVYGKVIGLYR-DNGMWKKAVGIVEEIREMGL------SLDRQIYNSIIDTF 262 (532)
Q Consensus 191 ~~~~~~~~~~a~~~-~~~m~~~~~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~li~~~ 262 (532)
..-++.+|..- .++.... |..-|...|-.+. ..=..+. +++.+....- +.=..+|--+.+-+
T Consensus 178 ---~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yLgkiS~e~---l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~ 247 (297)
T COG4785 178 ---QKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYLGKISEET---LMERLKADATDNTSLAEHLTETYFYLGKYY 247 (297)
T ss_pred ---hhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHHhhccHHH---HHHHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 23345555433 3333332 4333433332222 1111111 2222221110 00134677777788
Q ss_pred hccCCHHHHHHHHHHHHhC
Q 009556 263 GKYGELVEALEVFEKMQQE 281 (532)
Q Consensus 263 ~~~g~~~~A~~~~~~m~~~ 281 (532)
...|+.++|..+|+-....
T Consensus 248 l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 248 LSLGDLDEATALFKLAVAN 266 (297)
T ss_pred hccccHHHHHHHHHHHHHH
Confidence 8888888888888777665
No 307
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=85.55 E-value=35 Score=35.10 Aligned_cols=74 Identities=14% Similarity=0.069 Sum_probs=29.6
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHH
Q 009556 308 ELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAAL 383 (532)
Q Consensus 308 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 383 (532)
..++.+...-...+......++..|.+.|-.+.+..+.+.+-.+-. ...-|..-+..+.++|+...+..+.+.+
T Consensus 391 ~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~l 464 (566)
T PF07575_consen 391 ERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRL 464 (566)
T ss_dssp HHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH---------------
T ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3333443332333555666777777777777777777665543321 1223445555556666655544444433
No 308
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.18 E-value=2.2 Score=25.29 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHH
Q 009556 79 SYNKSIQYCCKLGDIDEAMALLAQMQ 104 (532)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~ 104 (532)
+++.+...|...|++++|+.++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 45556666666666666666665544
No 309
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=84.73 E-value=1.2 Score=27.18 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=12.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 009556 433 LINAFGVAGKYKEALSVYHLMKD 455 (532)
Q Consensus 433 li~~~~~~g~~~~A~~~~~~m~~ 455 (532)
|..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34455555555555555555543
No 310
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=84.68 E-value=2.8 Score=23.42 Aligned_cols=27 Identities=22% Similarity=0.292 Sum_probs=15.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHc
Q 009556 80 YNKSIQYCCKLGDIDEAMALLAQMQAL 106 (532)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 106 (532)
|..+-..+.+.|++++|++.|++..+.
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 445555666666666666666665544
No 311
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.64 E-value=12 Score=31.85 Aligned_cols=74 Identities=5% Similarity=0.057 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCcChHH
Q 009556 408 CEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDI---GISPDLVTYSTLMKAFIRAKKFHKVP 482 (532)
Q Consensus 408 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~ 482 (532)
-+.|.+.|-.+...+.--++.....|...|. ..+.++|..++.+..+. +-.+|+..+.+|++.+.+.|+++.|.
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3556666666665554444444444443333 55667777776666532 23566777777777777777776653
No 312
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=84.29 E-value=32 Score=31.27 Aligned_cols=20 Identities=25% Similarity=0.277 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHhcCCHHHHH
Q 009556 428 VMLNVLINAFGVAGKYKEAL 447 (532)
Q Consensus 428 ~~~~~li~~~~~~g~~~~A~ 447 (532)
.+|..|+.+++..|+.+-.+
T Consensus 322 K~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HhhhHHHHHHhcCChHHHHH
Confidence 45667777777777665543
No 313
>PRK09687 putative lyase; Provisional
Probab=83.40 E-value=36 Score=31.16 Aligned_cols=121 Identities=15% Similarity=0.062 Sum_probs=49.2
Q ss_pred CHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC-CHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 009556 216 NSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYG-ELVEALEVFEKMQQESIRPDIVTWNSLI 294 (532)
Q Consensus 216 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li 294 (532)
+..+-...+.++.+.++ +.+...+-.+.+. ++..+-...+.++.+.+ +.+.+...+..+... ++...-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQD---KNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcC---CChHHHHHHH
Confidence 33444444444444444 2333333333331 23333333444444332 123344444333322 2444444455
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 009556 295 RWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKD 350 (532)
Q Consensus 295 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 350 (532)
.++.+.|+ ..|+..+-+..+.+. .....+.++...|.. ++...+..+.+
T Consensus 214 ~aLg~~~~-~~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 214 IGLALRKD-KRVLSVLIKELKKGT-----VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHHHccCC-hhHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 55555554 234443333333221 123444555555553 34444444443
No 314
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=82.88 E-value=21 Score=30.33 Aligned_cols=107 Identities=11% Similarity=0.050 Sum_probs=69.4
Q ss_pred hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----ChHhHHHHHHHHHhcCChhHHHH
Q 009556 93 IDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNP----KLRFYNILLRGFLKKGLLGLGSR 168 (532)
Q Consensus 93 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~----~~~~~~~li~~~~~~g~~~~A~~ 168 (532)
-+.++.-.+.+...| .-+.+.|++++|..-|...++.-.+. ....|..-..++.+.+.++.|+.
T Consensus 88 k~k~~~kad~lK~EG------------N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~ 155 (271)
T KOG4234|consen 88 KDKAIEKADSLKKEG------------NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIE 155 (271)
T ss_pred HHHHHHHHHHHHHHH------------HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHH
Confidence 344555555555543 34567888888888888887653111 12345555567778888888888
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 009556 169 LLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKG 212 (532)
Q Consensus 169 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 212 (532)
-..+..+.+. .......--..+|.+...+++|++-|+.+.+..
T Consensus 156 dcsKaiel~p-ty~kAl~RRAeayek~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 156 DCSKAIELNP-TYEKALERRAEAYEKMEKYEEALEDYKKILESD 198 (271)
T ss_pred HHHhhHhcCc-hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC
Confidence 7777777543 122233334557888888899999888888763
No 315
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=82.85 E-value=10 Score=28.10 Aligned_cols=61 Identities=11% Similarity=0.134 Sum_probs=36.1
Q ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009556 409 EQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMK 470 (532)
Q Consensus 409 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 470 (532)
-+..+-+..+....+.|+.....+.+++|.+.+++.-|.++|+-.+.+ ..+....|..+++
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 355555666666667778888888888888888888888888776543 2222225555543
No 316
>PRK09687 putative lyase; Provisional
Probab=82.84 E-value=38 Score=31.01 Aligned_cols=146 Identities=15% Similarity=0.079 Sum_probs=63.0
Q ss_pred cCHHHHHHHHHHHHhcCCh----HHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCCh-----HHHHHHHHHHHHcCCCC
Q 009556 180 RNQETYEILLDYHVNAGRL----DDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMW-----KKAVGIVEEIREMGLSL 250 (532)
Q Consensus 180 ~~~~~~~~li~~~~~~~~~----~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~-----~~a~~~~~~~~~~~~~~ 250 (532)
+|...-...+.++.+.|+. +++...+..+... .++..+-...+.++...+.. ..+...+..... .+
T Consensus 66 ~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~ 140 (280)
T PRK09687 66 KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DK 140 (280)
T ss_pred CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CC
Confidence 3444444455555555542 3455555544322 23444444444444433211 122222222222 22
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009556 251 DRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAG-DVAKALELFTQMQEQGFYPDPKIFITII 329 (532)
Q Consensus 251 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~ll 329 (532)
+..+-...+.++++.++ +++...+-.+.+. +|...-...+.++.+.+ +...+...+..+.. .++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 44444555555655555 3444444444432 23333333344444332 13344444444442 33555555555
Q ss_pred HHHHccCC
Q 009556 330 SCLGELGK 337 (532)
Q Consensus 330 ~~~~~~~~ 337 (532)
.++.+.++
T Consensus 214 ~aLg~~~~ 221 (280)
T PRK09687 214 IGLALRKD 221 (280)
T ss_pred HHHHccCC
Confidence 56666555
No 317
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.19 E-value=22 Score=30.28 Aligned_cols=78 Identities=14% Similarity=0.024 Sum_probs=57.1
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHc---CCCcCHHHHHHHHHHHHhcCChH
Q 009556 123 ASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDM---GICRNQETYEILLDYHVNAGRLD 199 (532)
Q Consensus 123 ~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~li~~~~~~~~~~ 199 (532)
.+.|+ +.|.+.|-.+...+.-.++.....|...|. ..+.+++..++-...+. +-.+|+..+.+|+..+.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34444 678888888887775556666666666665 57788888888877654 33578888999999999999988
Q ss_pred HHH
Q 009556 200 DTW 202 (532)
Q Consensus 200 ~a~ 202 (532)
.|.
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 875
No 318
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=82.03 E-value=45 Score=31.26 Aligned_cols=127 Identities=13% Similarity=0.077 Sum_probs=58.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCC-----CCCHhHHHHHHHHHHhcCCcccHHHHHHHHHH----cCCCCCHHHHH--
Q 009556 328 IISCLGELGKWDVIKKNFENMKDRGH-----GKIGAIYAILVDIYGQYGRFRDPEECIAALKL----EGLQPSGSMFC-- 396 (532)
Q Consensus 328 ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~-- 396 (532)
+..+....+.++++.+.|+...+... .....++..|...|.+..++++|.-+.....+ .++.....-|.
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 33344444455555555555443211 11234455566666666666655544333221 12221111122
Q ss_pred ---HHHHHHHhcCCHHHHHHHHHHhc----cCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009556 397 ---ILANAYAQQGLCEQTVKVLQLME----PEGIEP-NLVMLNVLINAFGVAGKYKEALSVYHLMK 454 (532)
Q Consensus 397 ---~li~~~~~~g~~~~A~~~~~~m~----~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 454 (532)
.+.-++...|..-.|.+.-++.. ..|-.+ -....-.+.+.|...|+.+.|+.-|++..
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 22334555555555544444332 222111 12234456667777788877777776543
No 319
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.56 E-value=67 Score=32.94 Aligned_cols=180 Identities=14% Similarity=0.135 Sum_probs=104.5
Q ss_pred hhHHHHHHHHHHHcCCCcCHHHHHHH--HHH-HHhcCChHHHHHHHHHHHH-------CCCCcCHHhHHHHHHHHHcCC-
Q 009556 163 LGLGSRLLMVMEDMGICRNQETYEIL--LDY-HVNAGRLDDTWLIINEMRS-------KGFQLNSFVYGKVIGLYRDNG- 231 (532)
Q Consensus 163 ~~~A~~~~~~m~~~~~~~~~~~~~~l--i~~-~~~~~~~~~a~~~~~~m~~-------~~~~~~~~~~~~ll~~~~~~~- 231 (532)
...|.+.++...+.|.. ........ ..+ +....+.+.|+..|+.... .| .......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 45788888887776531 11111111 122 4466788999999988866 44 3335556666666643
Q ss_pred ----ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----HcCC
Q 009556 232 ----MWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGK-YGELVEALEVFEKMQQESIRPDIVTWNSLIRWHC----KAGD 302 (532)
Q Consensus 232 ----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~----~~g~ 302 (532)
+.+.|..++...-+.|. |+....-..+..... ..+...|.++|....+.|.. ..+-.+..+|. ...+
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVERN 379 (552)
T ss_pred CccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcCCC
Confidence 56778888888887763 344444333333333 34677888888888877653 22222222221 2236
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 009556 303 VAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRG 352 (532)
Q Consensus 303 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 352 (532)
.+.|..++.+.-+.| .|...--...+..+.. ++.+.+.-.+..+...+
T Consensus 380 ~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 788888888888877 3332222333334444 66666666666665554
No 320
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=81.24 E-value=27 Score=28.13 Aligned_cols=53 Identities=23% Similarity=0.171 Sum_probs=35.8
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHhH-HHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009556 88 CKLGDIDEAMALLAQMQALGFHPSSIS-YASLIEALASVGRTLEADAIFQEMVCFG 142 (532)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~li~~~~~~~~~~~A~~~~~~~~~~g 142 (532)
...++++++..+++.|.-. .|+..- -..-...+...|++.+|..+|+++.+.+
T Consensus 21 L~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 4578888888888887765 444332 2223345667888888888888887654
No 321
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=80.75 E-value=44 Score=30.31 Aligned_cols=57 Identities=18% Similarity=0.348 Sum_probs=35.4
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 009556 222 KVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQ 279 (532)
Q Consensus 222 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 279 (532)
...+.|...|.+.+|.++.+.....+ +.+...+-.++..+...||--+|.+.++.+.
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34456666777777777776666654 4455666666666666666555555555543
No 322
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=80.44 E-value=29 Score=27.97 Aligned_cols=50 Identities=14% Similarity=0.161 Sum_probs=21.3
Q ss_pred cCCcccHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhccC
Q 009556 370 YGRFRDPEECIAALKLEGLQ-PSGSMFCILANAYAQQGLCEQTVKVLQLMEPE 421 (532)
Q Consensus 370 ~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 421 (532)
.++.+++..+++.+.-..+. +...++. ...+...|++++|..+|++..+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhcc
Confidence 45555555555555433111 1111221 22234455555555555555543
No 323
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=80.16 E-value=0.59 Score=37.77 Aligned_cols=82 Identities=13% Similarity=-0.007 Sum_probs=46.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCC
Q 009556 83 SIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGL 162 (532)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 162 (532)
+|+.+.+.+.+..+...++.+...+...+....+.++..|++.++.++..++++. .+..-...+++.|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 5666666677777777777777665455566777777777777666666665551 111222344455555555
Q ss_pred hhHHHHHHH
Q 009556 163 LGLGSRLLM 171 (532)
Q Consensus 163 ~~~A~~~~~ 171 (532)
+++|.-++.
T Consensus 86 ~~~a~~Ly~ 94 (143)
T PF00637_consen 86 YEEAVYLYS 94 (143)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555544443
No 324
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=79.77 E-value=65 Score=31.70 Aligned_cols=75 Identities=15% Similarity=0.084 Sum_probs=54.8
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCChHhHHH
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALAS-VGRTLEADAIFQEMVCFGFNPKLRFYNI 152 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~~~~~~A~~~~~~~~~~g~~~~~~~~~~ 152 (532)
|+..|...|..+-+.+.+.+.-.+|.+|.... +.++..|-.-..-... ..+.+.|..+|...++.+ +.++..|-.
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n-pdsp~Lw~e 179 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN-PDSPKLWKE 179 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC-CCChHHHHH
Confidence 88999999999888888999999999998874 4455566544443333 344899999999988765 334444443
No 325
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=79.74 E-value=66 Score=31.76 Aligned_cols=181 Identities=15% Similarity=0.147 Sum_probs=130.0
Q ss_pred CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHH
Q 009556 74 EFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNIL 153 (532)
Q Consensus 74 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~l 153 (532)
..|-...-+++..+..+.+..-...+..+|...| .+--.|..+++.|..+ ..+.-..+++++.+..+ .|++.-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHH
Confidence 3455667789999999999999999999999875 5777899999999988 56778899999888763 455555566
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCcC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCcCHHhHHHHHHHH
Q 009556 154 LRGFLKKGLLGLGSRLLMVMEDMGICRN-----QETYEILLDYHVNAGRLDDTWLIINEMRS-KGFQLNSFVYGKVIGLY 227 (532)
Q Consensus 154 i~~~~~~g~~~~A~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~ll~~~ 227 (532)
...|-+ ++.+.+...|.++...-++.. ...|.-+...- ..+.+..+.+..+... .|..--...+..+..-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 666655 888889888888876544211 22565555432 3566777777777653 34444566777777889
Q ss_pred HcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009556 228 RDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTF 262 (532)
Q Consensus 228 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 262 (532)
....++++|++++..+.+.+ ..|...-..++..+
T Consensus 216 s~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 216 SENENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 99999999999999888764 33444444454443
No 326
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=79.72 E-value=48 Score=30.10 Aligned_cols=72 Identities=17% Similarity=0.160 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHH-----hCCCCCCHHHHH
Q 009556 429 MLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQME-----SSGCTPDRKARQ 501 (532)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~g~~p~~~t~~ 501 (532)
+++.....|..+|.+.+|.++-++....+ +.+...+-.|+..+...|+--.+.+.++++. +.|+..|....+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 34556678899999999999999888763 3467788899999999999888888888875 347776665443
No 327
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=79.39 E-value=5 Score=24.50 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=10.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHhc
Q 009556 398 LANAYAQQGLCEQTVKVLQLME 419 (532)
Q Consensus 398 li~~~~~~g~~~~A~~~~~~m~ 419 (532)
+..+|...|+.+.|.+++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHH
Confidence 3444445555555555554444
No 328
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.61 E-value=1e+02 Score=33.23 Aligned_cols=39 Identities=8% Similarity=0.005 Sum_probs=27.0
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 009556 226 LYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGK 264 (532)
Q Consensus 226 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 264 (532)
.+......+-+...++.+....-.++....+.++..|++
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 455666677777788877766656677777777777754
No 329
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=78.33 E-value=1.6e+02 Score=35.35 Aligned_cols=321 Identities=11% Similarity=-0.014 Sum_probs=157.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCC--CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHc
Q 009556 152 ILLRGFLKKGLLGLGSRLLMVMEDMGI--CRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRD 229 (532)
Q Consensus 152 ~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 229 (532)
.+..+-.+++.+..|...++.-..... .....-|-.+...|...+++|....+...-.. +... ..-+.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl-~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSL-YQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccH-HHHHHHHHh
Confidence 445566678888888888887311101 11233455555689999999888777664111 2222 233445677
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHHcCCHHHHHH
Q 009556 230 NGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSL-IRWHCKAGDVAKALE 308 (532)
Q Consensus 230 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-i~~~~~~g~~~~A~~ 308 (532)
.|++..|...|+.+.+.+ ++....++.+++.....|.++.+.-..+..... ..+....|+.+ +.+--+.++++....
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 899999999999998875 233667777777766777777777665555443 12223333322 333456677776666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccC--CHHHHHHHHHHHHhc--------CCC-CCHhHHHHHHHHHHhcCCcccHH
Q 009556 309 LFTQMQEQGFYPDPKIFITIISCLGELG--KWDVIKKNFENMKDR--------GHG-KIGAIYAILVDIYGQYGRFRDPE 377 (532)
Q Consensus 309 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~--------~~~-~~~~~~~~li~~~~~~g~~~~a~ 377 (532)
.+. ...+-...... +.....+.. +.-.-.+..+.+.+. ... .-...|..++....-..-.....
T Consensus 1540 ~l~--~~n~e~w~~~~---~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~ 1614 (2382)
T KOG0890|consen 1540 YLS--DRNIEYWSVES---IGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIE 1614 (2382)
T ss_pred hhh--cccccchhHHH---HHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 554 11111111111 122111111 111111111111111 111 11234444444333221111111
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH--------HHHhccCCC-CCCHHHHHHHHHHHHhcCCHHHHHH
Q 009556 378 ECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKV--------LQLMEPEGI-EPNLVMLNVLINAFGVAGKYKEALS 448 (532)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~--------~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~ 448 (532)
.+...=.......+..-|..-+. +.+....+.+- +..-.+.+. .--..+|-...+.....|+++.|..
T Consensus 1615 ~l~~~s~~~~s~~~sd~W~~Rl~---~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~n 1691 (2382)
T KOG0890|consen 1615 ELKKVSYDEDSANNSDNWKNRLE---RTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQN 1691 (2382)
T ss_pred HhhccCccccccccchhHHHHHH---HhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHH
Confidence 11100000000111111211111 11111111111 111111111 1234678888888888999999988
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhC
Q 009556 449 VYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESS 491 (532)
Q Consensus 449 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 491 (532)
.+-...+.+ .|. .+--.++-..+.|+...|+.++++-.+.
T Consensus 1692 all~A~e~r-~~~--i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1692 ALLNAKESR-LPE--IVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHhhhhcc-cch--HHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 776666654 333 3455666777889999999888888743
No 330
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=78.27 E-value=27 Score=29.68 Aligned_cols=88 Identities=13% Similarity=0.169 Sum_probs=47.9
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcC
Q 009556 297 HCKAGDVAKALELFTQMQEQGFYPD-----PKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYG 371 (532)
Q Consensus 297 ~~~~g~~~~A~~~~~~m~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 371 (532)
+.++|++++|..-|...++.- ++. ...|..-..++.+++.++.|+.--...++.+. ........-..+|.+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p-ty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNP-TYEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc-hhHHHHHHHHHHHHhhh
Confidence 456677777777666666541 111 12333444455666677766666666665542 12222223344566666
Q ss_pred CcccHHHHHHHHHHc
Q 009556 372 RFRDPEECIAALKLE 386 (532)
Q Consensus 372 ~~~~a~~~~~~~~~~ 386 (532)
.+++|++-|..+.+.
T Consensus 183 k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 183 KYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHHh
Confidence 666666666666654
No 331
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=78.22 E-value=91 Score=32.47 Aligned_cols=22 Identities=23% Similarity=0.578 Sum_probs=15.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 009556 434 INAFGVAGKYKEALSVYHLMKD 455 (532)
Q Consensus 434 i~~~~~~g~~~~A~~~~~~m~~ 455 (532)
..-+...|++++|..+|+...+
T Consensus 421 A~~~e~~g~~~dAi~Ly~La~~ 442 (613)
T PF04097_consen 421 AREAEERGRFEDAILLYHLAEE 442 (613)
T ss_dssp HHHHHHCT-HHHHHHHHHHTT-
T ss_pred HHHHHHCCCHHHHHHHHHHHhh
Confidence 3446678999999999987764
No 332
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=77.83 E-value=25 Score=31.58 Aligned_cols=87 Identities=15% Similarity=0.121 Sum_probs=35.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHh----
Q 009556 294 IRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQ---- 369 (532)
Q Consensus 294 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---- 369 (532)
|++++..+++.+++.+.-+--+..-+..+.+...-|-.|.+.+....+.++-..-.+....-+..-|..+++.|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 4445555555555444333322211112233333333445555555555444444432222222224444443332
Q ss_pred -cCCcccHHHHH
Q 009556 370 -YGRFRDPEECI 380 (532)
Q Consensus 370 -~g~~~~a~~~~ 380 (532)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 35555555544
No 333
>PRK11619 lytic murein transglycosylase; Provisional
Probab=77.57 E-value=97 Score=32.44 Aligned_cols=145 Identities=10% Similarity=0.104 Sum_probs=75.9
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHH
Q 009556 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGF 157 (532)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 157 (532)
..|....++ .+.|++..+.++-..+...-. ..-..|..+...+. ....++....+++-. +.+.....-...+..+
T Consensus 35 ~~f~~A~~a-~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l~-~~~~~ev~~Fl~~~~--~~P~~~~Lr~~~l~~L 109 (644)
T PRK11619 35 QRYQQIKQA-WDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDLM-NQPAVQVTNFIRANP--TLPPARSLQSRFVNEL 109 (644)
T ss_pred HHHHHHHHH-HHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhccc-cCCHHHHHHHHHHCC--CCchHHHHHHHHHHHH
Confidence 344444444 467889888888777653211 11112322222211 223444433333321 1122223334455556
Q ss_pred HhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCCh
Q 009556 158 LKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMW 233 (532)
Q Consensus 158 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 233 (532)
.+.+++....+.+.. .+.+...-.....+....|+.++|......+-..|.. .+.....++..+.+.|.+
T Consensus 110 a~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~l 179 (644)
T PRK11619 110 ARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQ 179 (644)
T ss_pred HHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCC
Confidence 667777766663311 2345555667777888888888887777776554432 345556666666655543
No 334
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=77.34 E-value=56 Score=29.54 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=18.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 009556 292 SLIRWHCKAGDVAKALELFTQMQ 314 (532)
Q Consensus 292 ~li~~~~~~g~~~~A~~~~~~m~ 314 (532)
.+|..+.+.|.+.+|+.+...+.
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll 152 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLL 152 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHH
Confidence 57788899999999987766543
No 335
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=77.31 E-value=22 Score=30.67 Aligned_cols=75 Identities=12% Similarity=0.026 Sum_probs=45.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CcCHHHHHHHHH
Q 009556 115 YASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGI--CRNQETYEILLD 190 (532)
Q Consensus 115 ~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~ 190 (532)
.+..+..+.+.+++.+|+.+.++-.+.. +.|...-..++..++-.|++++|..-++..-.... .+....|..+|.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 3445666677777777777777666554 44566667777777777777777666655544321 123334555444
No 336
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=76.93 E-value=68 Score=30.37 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009556 289 TWNSLIRWHCKAGDVAKALELFTQMQ 314 (532)
Q Consensus 289 ~~~~li~~~~~~g~~~~A~~~~~~m~ 314 (532)
+|..++..+.+.|.++.|...+..+.
T Consensus 148 ~~l~~a~~aRk~g~~~~A~~~l~~~~ 173 (352)
T PF02259_consen 148 TWLKFAKLARKAGNFQLALSALNRLF 173 (352)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHh
Confidence 34444444444455555444444444
No 337
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=76.80 E-value=76 Score=30.86 Aligned_cols=415 Identities=13% Similarity=0.136 Sum_probs=221.3
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHh------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHH--HH
Q 009556 87 CCKLGDIDEAMALLAQMQALGFHPSSI------SYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG--FL 158 (532)
Q Consensus 87 ~~~~g~~~~A~~~~~~m~~~~~~~~~~------~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~--~~ 158 (532)
+-+++++.+|.++|.+..+.- ..++. .-+.+++++.. ++.+.....+....+.. | ...|-.|..+ +.
T Consensus 16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF--G-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHH
Confidence 357899999999999987653 22322 23456666654 45566666665555432 2 3334444443 34
Q ss_pred hcCChhHHHHHHHHHHHc--CCC------------cCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCcCHHhH
Q 009556 159 KKGLLGLGSRLLMVMEDM--GIC------------RNQETYEILLDYHVNAGRLDDTWLIINEMRSK----GFQLNSFVY 220 (532)
Q Consensus 159 ~~g~~~~A~~~~~~m~~~--~~~------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~ 220 (532)
+.+.++.|.+.+....+. +.. +|-..=+..++.+...|++.++..+++++... ...-+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 678899999988877654 221 12222356677888999999999999888654 334688888
Q ss_pred HHHHHHHHcC--------CCh-------HHHHHHHHHHHHc------CCCCCHHHHHHHHHHHhcc--CCHHHHHHHHHH
Q 009556 221 GKVIGLYRDN--------GMW-------KKAVGIVEEIREM------GLSLDRQIYNSIIDTFGKY--GELVEALEVFEK 277 (532)
Q Consensus 221 ~~ll~~~~~~--------~~~-------~~a~~~~~~~~~~------~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~ 277 (532)
+.++-.+.+. ... +-+.-..+++... .+.|.......++....-. .+..--.++++.
T Consensus 171 d~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~ 250 (549)
T PF07079_consen 171 DRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILEN 250 (549)
T ss_pred HHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHH
Confidence 8865554432 111 1111111111111 1122222222222222111 111222222333
Q ss_pred HHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 009556 278 MQQESIRPDIV-TWNSLIRWHCKAGDVAKALELFTQMQEQGFYP----DPKIFITIISCLGELGKWDVIKKNFENMKDRG 352 (532)
Q Consensus 278 m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 352 (532)
....-+.|+.. ....++..+.+ +.+++..+-+.+....+.+ =..+|..++....+.++...|.+.+..+.-.+
T Consensus 251 We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld 328 (549)
T PF07079_consen 251 WENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD 328 (549)
T ss_pred HHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC
Confidence 33333344422 12333333433 6677776666665443221 13567778888888888999988888777554
Q ss_pred CCCCHh-----HHHHHHHHHHh----cCCcccHHHHHHHHHHcCCCCCHHHHHHHH---HHHHhcCC-HHHHHHHHHHhc
Q 009556 353 HGKIGA-----IYAILVDIYGQ----YGRFRDPEECIAALKLEGLQPSGSMFCILA---NAYAQQGL-CEQTVKVLQLME 419 (532)
Q Consensus 353 ~~~~~~-----~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li---~~~~~~g~-~~~A~~~~~~m~ 419 (532)
...... +-..+.+..+. .-+...-+.+|+.....++.- ......|+ .-+.+.|. -++|+.+++...
T Consensus 329 p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr-qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il 407 (549)
T PF07079_consen 329 PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR-QQLVHYLVFGAKHLWEIGQCDEKALNLLKLIL 407 (549)
T ss_pred CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH-HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 221100 01122233331 112223344555555544321 11122222 33555665 788999999887
Q ss_pred cCCCCCCHHHHHHHH----HHHHhc---CCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHH--HHhcCCcChHHHHHH
Q 009556 420 PEGIEPNLVMLNVLI----NAFGVA---GKYKEALSVYHLMKDIGISPDLV----TYSTLMKA--FIRAKKFHKVPEIYK 486 (532)
Q Consensus 420 ~~~~~p~~~~~~~li----~~~~~~---g~~~~A~~~~~~m~~~~~~p~~~----~~~~l~~~--~~~~g~~~~a~~~~~ 486 (532)
+.. .-|..+-|.+. .+|..+ ..+.+-..+-+-..+.|++|-.+ .-|.|.+| +...|++.++.-.-.
T Consensus 408 ~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~ 486 (549)
T PF07079_consen 408 QFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSS 486 (549)
T ss_pred Hhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 653 33555444333 233332 22333333334445678776433 34444433 456899998887666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHHhh
Q 009556 487 QMESSGCTPDRKARQILQSALVVLEQ 512 (532)
Q Consensus 487 ~m~~~g~~p~~~t~~~l~~a~~~~~~ 512 (532)
-+.+ +.|...+++.+.-++....+
T Consensus 487 WL~~--iaPS~~~~RLlGl~l~e~k~ 510 (549)
T PF07079_consen 487 WLTK--IAPSPQAYRLLGLCLMENKR 510 (549)
T ss_pred HHHH--hCCcHHHHHHHHHHHHHHhh
Confidence 6655 89999999988766665444
No 338
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.61 E-value=95 Score=31.86 Aligned_cols=113 Identities=13% Similarity=-0.013 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHHHcCCCCCHhHHHHHHHH-----HHhcCCHHHHHHHHHHHHH-------CCCCCChHhHHHHHHHHHhc
Q 009556 93 IDEAMALLAQMQALGFHPSSISYASLIEA-----LASVGRTLEADAIFQEMVC-------FGFNPKLRFYNILLRGFLKK 160 (532)
Q Consensus 93 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~-----~~~~~~~~~A~~~~~~~~~-------~g~~~~~~~~~~li~~~~~~ 160 (532)
...|.+.++.....| +......+... .....+.+.|+.+|..+.+ .| +......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 456778888777765 33332223222 3345678888888887766 33 223444555555553
Q ss_pred C-----ChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHCC
Q 009556 161 G-----LLGLGSRLLMVMEDMGICRNQETYEILLDYHVN-AGRLDDTWLIINEMRSKG 212 (532)
Q Consensus 161 g-----~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~~ 212 (532)
. +.+.|..++...-+.|. |+.......+..... ..+...|.++|...-+.|
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G 358 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG 358 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC
Confidence 2 44556666666666554 333222222211111 134456666666665555
No 339
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=76.17 E-value=8.8 Score=21.34 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009556 429 MLNVLINAFGVAGKYKEALSVYHLMKD 455 (532)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 455 (532)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445555666666666666666666554
No 340
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=76.00 E-value=1.1e+02 Score=32.47 Aligned_cols=316 Identities=14% Similarity=0.066 Sum_probs=160.8
Q ss_pred HHHHHHHHHHHHCCCC-------cCHHhHHHHHHHHHc----CCChHHHHHHHHHH----HHcCCCCCHHHHHHHHHHHh
Q 009556 199 DDTWLIINEMRSKGFQ-------LNSFVYGKVIGLYRD----NGMWKKAVGIVEEI----REMGLSLDRQIYNSIIDTFG 263 (532)
Q Consensus 199 ~~a~~~~~~m~~~~~~-------~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~----~~~~~~~~~~~~~~li~~~~ 263 (532)
+....+++++...|+- +.-+-|..++.-+.+ .+......+++... .+.|.+ + -.|+-..
T Consensus 298 ~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~~~~~~~~lH~~Aa~w~~~~g~~-~-----eAI~hAl 371 (894)
T COG2909 298 ENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRELAARLKELHRAAAEWFAEHGLP-S-----EAIDHAL 371 (894)
T ss_pred CcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhccccCCchhHHHHHHHHHHHhCCCh-H-----HHHHHHH
Confidence 4556677787777642 233445555543332 21222333333332 223321 1 2344455
Q ss_pred ccCCHHHHHHHHHHHHhC---C-----------CCCCHHHHH----HH--HHHHHHcCCHHHHHHHHHHHHHCCCCCC--
Q 009556 264 KYGELVEALEVFEKMQQE---S-----------IRPDIVTWN----SL--IRWHCKAGDVAKALELFTQMQEQGFYPD-- 321 (532)
Q Consensus 264 ~~g~~~~A~~~~~~m~~~---~-----------~~p~~~~~~----~l--i~~~~~~g~~~~A~~~~~~m~~~~~~~~-- 321 (532)
+.|+++.|..++++.... + --|+....+ .+ +.......++++|..++.++...-..|+
T Consensus 372 aA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~ 451 (894)
T COG2909 372 AAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHS 451 (894)
T ss_pred hCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCccc
Confidence 677887777777665211 0 012211111 11 2234567789999999888764322222
Q ss_pred --HH---HHHHHHH-HHHccCCHHHHHHHHHHHHhc----CCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCC
Q 009556 322 --PK---IFITIIS-CLGELGKWDVIKKNFENMKDR----GHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPS 391 (532)
Q Consensus 322 --~~---~~~~ll~-~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 391 (532)
.. .++.+-. .....|+++.+.++-+..... -..+....+..+..+..-.|++++|..+..+..+..-.-+
T Consensus 452 ~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~ 531 (894)
T COG2909 452 RQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHD 531 (894)
T ss_pred chhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcc
Confidence 11 2222211 233567888888887776643 2234566677778888889999999998887765432223
Q ss_pred HHH---HHHHH--HHHHhcCCHH--HHHHHHHHhccC-----CC-CCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCC
Q 009556 392 GSM---FCILA--NAYAQQGLCE--QTVKVLQLMEPE-----GI-EPNLVMLNVLINAFGVA-GKYKEALSVYHLMKDIG 457 (532)
Q Consensus 392 ~~~---~~~li--~~~~~~g~~~--~A~~~~~~m~~~-----~~-~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~ 457 (532)
... |..+. ..+...|... +....+...... .. .+-.-++..+..++.+. +...+|..-++--....
T Consensus 532 ~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~ 611 (894)
T COG2909 532 VYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYT 611 (894)
T ss_pred cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcc
Confidence 332 33332 2345566332 222233322211 00 12233455555555552 22233333333222222
Q ss_pred CCCCHHHH--HHHHHHHHhcCCcChHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHHhhhhhccccc
Q 009556 458 ISPDLVTY--STLMKAFIRAKKFHKVPEIYKQMESS----GCTPDRKARQILQSALVVLEQRRCKQRLD 520 (532)
Q Consensus 458 ~~p~~~~~--~~l~~~~~~~g~~~~a~~~~~~m~~~----g~~p~~~t~~~l~~a~~~~~~~~~~~~~~ 520 (532)
..|-...+ ..|+......|+.++|...++++... +..++..+....++...-..+.+...+.+
T Consensus 612 ~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~ 680 (894)
T COG2909 612 PQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAE 680 (894)
T ss_pred cchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHH
Confidence 22222222 36778888999999999999888754 34455555566666555544444433333
No 341
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=75.53 E-value=88 Score=30.96 Aligned_cols=166 Identities=11% Similarity=0.060 Sum_probs=109.6
Q ss_pred CCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHH
Q 009556 144 NPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKV 223 (532)
Q Consensus 144 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 223 (532)
..|....-+++..+..+....-..-+..+|...| -+...|..++..|..+ ..++-..+|+++.+..+. ......-
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn--Dvv~~Re 137 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN--DVVIGRE 137 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch--hHHHHHH
Confidence 3466667788888888888888888888888755 4777888888888888 567778888888776543 3333333
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 009556 224 IGLYRDNGMWKKAVGIVEEIREMGLS-----LDRQIYNSIIDTFGKYGELVEALEVFEKMQQE-SIRPDIVTWNSLIRWH 297 (532)
Q Consensus 224 l~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~ 297 (532)
+..+...++.+.+...|..+..+-++ .-...|..++..- ..+.+.-..+..++... |...-.+.+.-+-..|
T Consensus 138 La~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 138 LADKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 33444447778888888777654322 1122455554422 34566666666665543 3444455666666778
Q ss_pred HHcCCHHHHHHHHHHHHHC
Q 009556 298 CKAGDVAKALELFTQMQEQ 316 (532)
Q Consensus 298 ~~~g~~~~A~~~~~~m~~~ 316 (532)
....++++|++++..+.+.
T Consensus 216 s~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 216 SENENWTEAIRILKHILEH 234 (711)
T ss_pred ccccCHHHHHHHHHHHhhh
Confidence 8888889998888877654
No 342
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=75.45 E-value=75 Score=30.09 Aligned_cols=66 Identities=5% Similarity=0.102 Sum_probs=51.1
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC---CHhHHHHHHHHHHhcCCcccHHHHHHHHHH
Q 009556 320 PDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGK---IGAIYAILVDIYGQYGRFRDPEECIAALKL 385 (532)
Q Consensus 320 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 385 (532)
....++..+...+.+.|.++.|...+..+...+... .+.+.-.-.......|+..+|...++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345678888889999999999999999988754222 345555667777888999999999888776
No 343
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=74.86 E-value=67 Score=29.25 Aligned_cols=116 Identities=11% Similarity=0.190 Sum_probs=65.4
Q ss_pred ChHHHHHHHHHHHH-CCCCcCHHhHHHHHHHHHc-CC-ChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHhccCCHHHHH
Q 009556 197 RLDDTWLIINEMRS-KGFQLNSFVYGKVIGLYRD-NG-MWKKAVGIVEEIRE-MGLSLDRQIYNSIIDTFGKYGELVEAL 272 (532)
Q Consensus 197 ~~~~a~~~~~~m~~-~~~~~~~~~~~~ll~~~~~-~~-~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~ 272 (532)
.+.+|+++|+.... ..+--|..+...+++.... .+ ....-.++.+.+.. .+-.++..+...++..+++.+++..-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34566666663221 2234466666666666554 22 12222223333322 233556666677777777777777777
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009556 273 EVFEKMQQE-SIRPDIVTWNSLIRWHCKAGDVAKALELFTQ 312 (532)
Q Consensus 273 ~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 312 (532)
++++..... +...|...|..+|......|+..-...+..+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 777665544 4455667777777777777776655555543
No 344
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=74.62 E-value=5.5 Score=20.86 Aligned_cols=20 Identities=35% Similarity=0.255 Sum_probs=11.1
Q ss_pred HHHHHHHHcCChHHHHHHHH
Q 009556 82 KSIQYCCKLGDIDEAMALLA 101 (532)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~ 101 (532)
.+...+...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34455555666666655554
No 345
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=74.29 E-value=20 Score=27.76 Aligned_cols=37 Identities=16% Similarity=0.298 Sum_probs=17.9
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHH
Q 009556 453 MKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQME 489 (532)
Q Consensus 453 m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 489 (532)
+...++.|++.....-+++|.+.+++..|.++|+-.+
T Consensus 75 l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 75 LFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred hhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3334444454444555555555555555555544444
No 346
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.21 E-value=54 Score=27.86 Aligned_cols=97 Identities=14% Similarity=0.074 Sum_probs=65.1
Q ss_pred HHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009556 399 ANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLN-----VLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFI 473 (532)
Q Consensus 399 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 473 (532)
...+...+++++|..-++..... |.-..+. .|.+.....|.+++|..+++...+.+.. ......-.+.+.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill 170 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILL 170 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHH
Confidence 45677788899998888876643 2222232 3456677889999999888877664332 222344457788
Q ss_pred hcCCcChHHHHHHHHHhCCCCCCHHHHHH
Q 009556 474 RAKKFHKVPEIYKQMESSGCTPDRKARQI 502 (532)
Q Consensus 474 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 502 (532)
..|+-++|+.-|++....+ ++.....+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~--~s~~~~~~ 197 (207)
T COG2976 171 AKGDKQEARAAYEKALESD--ASPAAREI 197 (207)
T ss_pred HcCchHHHHHHHHHHHHcc--CChHHHHH
Confidence 8899999999999998876 44433333
No 347
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=73.67 E-value=5.8 Score=21.82 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=13.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Q 009556 83 SIQYCCKLGDIDEAMALLAQMQAL 106 (532)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~ 106 (532)
+...+.+.|++++|.+.|+++.+.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 334455556666666666665554
No 348
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.92 E-value=1.4e+02 Score=32.17 Aligned_cols=57 Identities=19% Similarity=0.247 Sum_probs=39.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhH-----HHHHHH---HHHhcCCHHHHHHHHHHHHH
Q 009556 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSIS-----YASLIE---ALASVGRTLEADAIFQEMVC 140 (532)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-----~~~li~---~~~~~~~~~~A~~~~~~~~~ 140 (532)
+..=+..+.+...+++|+.+-+.... |++.. +..... -+..++++++|.+.|.++..
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~----~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~ 374 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDS----PNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEI 374 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCC----CChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcc
Confidence 67778888888899999998876654 33322 122222 24567999999999998864
No 349
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=72.10 E-value=56 Score=29.51 Aligned_cols=57 Identities=9% Similarity=-0.004 Sum_probs=26.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHH
Q 009556 189 LDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIRE 245 (532)
Q Consensus 189 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 245 (532)
|.+++..+++.+++...-+..+..-+........-|-.|.+.++...+.++-.....
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~ 146 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQ 146 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 555666666666555443333322222233333334445555555555544444443
No 350
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=71.89 E-value=38 Score=32.92 Aligned_cols=24 Identities=4% Similarity=0.289 Sum_probs=16.3
Q ss_pred hcCCcChHHHHHHHHHhCCCCCCH
Q 009556 474 RAKKFHKVPEIYKQMESSGCTPDR 497 (532)
Q Consensus 474 ~~g~~~~a~~~~~~m~~~g~~p~~ 497 (532)
...++..|+++|+++.+-+-+...
T Consensus 788 ~~~~~~~~~~~~~~~~~~~~~~~~ 811 (831)
T PRK15180 788 HLRDYTQALQYWQRLEKVNGPTEP 811 (831)
T ss_pred HHHHHHHHHHHHHHHHhccCCCcc
Confidence 346778888999998875433333
No 351
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=71.77 E-value=12 Score=20.80 Aligned_cols=28 Identities=25% Similarity=0.380 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 009556 79 SYNKSIQYCCKLGDIDEAMALLAQMQAL 106 (532)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 106 (532)
+|..+-..|...|++++|.+.|++..+.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3555666666777777777777766543
No 352
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=71.60 E-value=62 Score=31.73 Aligned_cols=44 Identities=11% Similarity=0.106 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009556 429 MLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIR 474 (532)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 474 (532)
+||. .-.|...|++-.|.+.|.+.... +..++..|-.|..+|..
T Consensus 338 lYNc-G~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 338 LYNC-GLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHhh-hHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 3443 34577889999999999888764 55688889999988864
No 353
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.26 E-value=64 Score=27.44 Aligned_cols=55 Identities=11% Similarity=0.125 Sum_probs=24.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 009556 190 DYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREM 246 (532)
Q Consensus 190 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 246 (532)
+.....|.+++|+.+++.....+.. ......-.+.+...|+-++|..-|+...+.
T Consensus 134 rvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 134 RVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 3444455555555555544333211 111222234455555555555555555554
No 354
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=70.90 E-value=1.4e+02 Score=31.17 Aligned_cols=170 Identities=9% Similarity=-0.022 Sum_probs=102.3
Q ss_pred CCCChhhHHHHHHHHH-HcCChHHHHHHHHHHHHcCCCCCHh-----HHHHHHHHHHhcCCHHHHHHHHHHHHHCC----
Q 009556 73 EEFSGNSYNKSIQYCC-KLGDIDEAMALLAQMQALGFHPSSI-----SYASLIEALASVGRTLEADAIFQEMVCFG---- 142 (532)
Q Consensus 73 ~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~~~~~-----~~~~li~~~~~~~~~~~A~~~~~~~~~~g---- 142 (532)
++.+..++-.+...+. ...++++|...+++.....-+++.. ....+++.+.+.+... |...+++..+.-
T Consensus 55 p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~ 133 (608)
T PF10345_consen 55 PRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYG 133 (608)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccC
Confidence 4455666777777776 6789999999999875543233222 1234456666666555 888888876431
Q ss_pred CCCChHhHHHH-HHHHHhcCChhHHHHHHHHHHHcC---CCcCHHHHHHHHHHHH--hcCChHHHHHHHHHHHHCCC---
Q 009556 143 FNPKLRFYNIL-LRGFLKKGLLGLGSRLLMVMEDMG---ICRNQETYEILLDYHV--NAGRLDDTWLIINEMRSKGF--- 213 (532)
Q Consensus 143 ~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~~~~li~~~~--~~~~~~~a~~~~~~m~~~~~--- 213 (532)
..+-...+..+ +..+...++...|.+.++.+.... ..|...++-.++.+.. +.+..+++.+..+++.....
T Consensus 134 ~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q 213 (608)
T PF10345_consen 134 HSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQ 213 (608)
T ss_pred chhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcc
Confidence 11222333333 333334479999999998887642 2344455555555443 45667778777777643221
Q ss_pred ------CcCHHhHHHHHHHHH--cCCChHHHHHHHHHH
Q 009556 214 ------QLNSFVYGKVIGLYR--DNGMWKKAVGIVEEI 243 (532)
Q Consensus 214 ------~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~ 243 (532)
.|-..++..+++.++ ..|+++.+.+.++++
T Consensus 214 ~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 214 LDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred cCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334566777776554 567766776665554
No 355
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=70.79 E-value=22 Score=32.82 Aligned_cols=46 Identities=20% Similarity=0.253 Sum_probs=21.7
Q ss_pred HHHhcCCcccHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 009556 366 IYGQYGRFRDPEECIAALKLEGLQP-SGSMFCILANAYAQQGLCEQTVK 413 (532)
Q Consensus 366 ~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~ 413 (532)
-|.+.|.+++|++.|...... .| +.+++..-..+|.+...+..|..
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~ 152 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEE 152 (536)
T ss_pred hhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHH
Confidence 355555555555555544332 22 44444444445555544444433
No 356
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=69.79 E-value=20 Score=22.32 Aligned_cols=37 Identities=24% Similarity=0.343 Sum_probs=25.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 009556 84 IQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIE 120 (532)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 120 (532)
+....+.|-.+++..++++|.+.|+..+...+..+++
T Consensus 9 L~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 9 LLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3344566777777777777777777777777666654
No 357
>PHA02875 ankyrin repeat protein; Provisional
Probab=69.71 E-value=1.2e+02 Score=29.76 Aligned_cols=210 Identities=13% Similarity=0.063 Sum_probs=98.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHhH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH--hHHHHHHHHHh
Q 009556 84 IQYCCKLGDIDEAMALLAQMQALGFHPSSIS--YASLIEALASVGRTLEADAIFQEMVCFGFNPKLR--FYNILLRGFLK 159 (532)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~--~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~--~~~~li~~~~~ 159 (532)
+...++.|+.+-+..++ +.|..++... ..+.+...+..|+.+- .+.+.+.|..|+.. .....+...++
T Consensus 6 L~~A~~~g~~~iv~~Ll----~~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~ 77 (413)
T PHA02875 6 LCDAILFGELDIARRLL----DIGINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVE 77 (413)
T ss_pred HHHHHHhCCHHHHHHHH----HCCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHH
Confidence 33445667776554444 4565555432 2334455556777653 44445556555432 12234555667
Q ss_pred cCChhHHHHHHHHHHHcCCCcCHH---HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHh--HHHHHHHHHcCCChH
Q 009556 160 KGLLGLGSRLLMVMEDMGICRNQE---TYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFV--YGKVIGLYRDNGMWK 234 (532)
Q Consensus 160 ~g~~~~A~~~~~~m~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~~~~~ 234 (532)
.|+.+.+..+++. |...+.. .-.+.+...+..|+. ++++.+.+.|..|+... -.+.+...+..|+.+
T Consensus 78 ~g~~~~v~~Ll~~----~~~~~~~~~~~g~tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~ 149 (413)
T PHA02875 78 EGDVKAVEELLDL----GKFADDVFYKDGMTPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIK 149 (413)
T ss_pred CCCHHHHHHHHHc----CCcccccccCCCCCHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 7887766555542 2211110 112334444555665 34555556666654322 123444555667665
Q ss_pred HHHHHHHHHHHcCCCCCH---HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHHcCCHHHHHH
Q 009556 235 KAVGIVEEIREMGLSLDR---QIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTW---NSLIRWHCKAGDVAKALE 308 (532)
Q Consensus 235 ~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~---~~li~~~~~~g~~~~A~~ 308 (532)
-+..+ .+.|..++. .-.+ .+...+..|+.+ +.+.+.+.|..++...- .+.+...+..|+.+
T Consensus 150 ~v~~L----l~~g~~~~~~d~~g~T-pL~~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~---- 216 (413)
T PHA02875 150 GIELL----IDHKACLDIEDCCGCT-PLIIAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID---- 216 (413)
T ss_pred HHHHH----HhcCCCCCCCCCCCCC-HHHHHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----
Confidence 44433 344433221 1122 233344456654 33444555555543221 23344344555544
Q ss_pred HHHHHHHCCCCCCH
Q 009556 309 LFTQMQEQGFYPDP 322 (532)
Q Consensus 309 ~~~~m~~~~~~~~~ 322 (532)
+.+.+.+.|..++.
T Consensus 217 iv~~Ll~~gad~n~ 230 (413)
T PHA02875 217 IVRLFIKRGADCNI 230 (413)
T ss_pred HHHHHHHCCcCcch
Confidence 34444556665553
No 358
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=69.61 E-value=26 Score=24.50 Aligned_cols=54 Identities=13% Similarity=0.196 Sum_probs=42.6
Q ss_pred HhcCCcChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhhccccchhhhhh
Q 009556 473 IRAKKFHKVPEIYKQMESSGCTPDRKARQILQSALVVLEQRRCKQRLDIFVFHV 526 (532)
Q Consensus 473 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~a~~~~~~~~~~~~~~~~~~~~ 526 (532)
...|+.+.+.+++++..+.|+.|.......+..++...|.+-....+....+|+
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG~~w~~~~~~v~~e~~ 65 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIGELWEEGEISVAQEHL 65 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHHHHHHTTSS-HHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHH
Confidence 346888999999999998899999988888999999988887777666655544
No 359
>PHA02875 ankyrin repeat protein; Provisional
Probab=68.16 E-value=89 Score=30.54 Aligned_cols=76 Identities=18% Similarity=0.172 Sum_probs=36.8
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHHcCC
Q 009556 227 YRDNGMWKKAVGIVEEIREMGLSLDRQI--YNSIIDTFGKYGELVEALEVFEKMQQESIRPDIV--TWNSLIRWHCKAGD 302 (532)
Q Consensus 227 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~ 302 (532)
.+..|+.+- ++.+.+.|..++... ....++..+..|+.+- .+.+.+.|..|+.. .....+...+..|+
T Consensus 9 A~~~g~~~i----v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 9 AILFGELDI----ARRLLDIGINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHHhCCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 344566544 344445666655432 2334455556666643 33344455444432 11233445556677
Q ss_pred HHHHHHHH
Q 009556 303 VAKALELF 310 (532)
Q Consensus 303 ~~~A~~~~ 310 (532)
.+.+..++
T Consensus 81 ~~~v~~Ll 88 (413)
T PHA02875 81 VKAVEELL 88 (413)
T ss_pred HHHHHHHH
Confidence 66554444
No 360
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=68.00 E-value=22 Score=22.20 Aligned_cols=34 Identities=12% Similarity=0.135 Sum_probs=19.9
Q ss_pred HHhcCCcChHHHHHHHHHhCCCCCCHHHHHHHHH
Q 009556 472 FIRAKKFHKVPEIYKQMESSGCTPDRKARQILQS 505 (532)
Q Consensus 472 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~ 505 (532)
..+.|-.+++..++++|.+.|+..+...++.+++
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3445555566666666666666666655555443
No 361
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=67.96 E-value=11 Score=34.22 Aligned_cols=42 Identities=29% Similarity=0.493 Sum_probs=30.3
Q ss_pred CCChhh-HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHH
Q 009556 74 EFSGNS-YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISY 115 (532)
Q Consensus 74 ~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 115 (532)
.+|..+ ||..|....+.||+++|+.++++..+.|+.--..+|
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 345444 578888888888888888888888888865444444
No 362
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=66.52 E-value=51 Score=24.47 Aligned_cols=51 Identities=22% Similarity=0.262 Sum_probs=26.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCC
Q 009556 436 AFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSG 492 (532)
Q Consensus 436 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 492 (532)
.+...|++++|..+.+.+ ..||...|.+|. -.+.|-.+++..-+.+|..+|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALc--e~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALC--EWRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHH--HHhhccHHHHHHHHHHHHhCC
Confidence 455566666666555444 245665555542 234454445555555555443
No 363
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=66.43 E-value=78 Score=26.57 Aligned_cols=66 Identities=14% Similarity=0.079 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHcCCCCCHhHHHHHHHH---HHhcCCHHHHHHHHHHHHHC-----CCCCC-hHhHHHHHHHHHh
Q 009556 93 IDEAMALLAQMQALGFHPSSISYASLIEA---LASVGRTLEADAIFQEMVCF-----GFNPK-LRFYNILLRGFLK 159 (532)
Q Consensus 93 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~---~~~~~~~~~A~~~~~~~~~~-----g~~~~-~~~~~~li~~~~~ 159 (532)
++.|.+.++.-...+ +.|...++.-..+ +++..+..++.+++++.... .+.|+ ..++..+..+|..
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts 81 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTS 81 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 455666666644443 4555544443333 33344444454444443321 12343 3455555555544
No 364
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=65.63 E-value=52 Score=26.57 Aligned_cols=63 Identities=11% Similarity=0.108 Sum_probs=42.9
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhh
Q 009556 449 VYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSALVVLEQ 512 (532)
Q Consensus 449 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~a~~~~~~ 512 (532)
+.+.+.+.|++++.. =..++..+.+.++.-.|.++++++.+.+......|..-.++.+...|-
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 344556667766554 235666677777778888888888887777777777777777666554
No 365
>PRK11619 lytic murein transglycosylase; Provisional
Probab=65.29 E-value=1.8e+02 Score=30.46 Aligned_cols=168 Identities=7% Similarity=-0.059 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 009556 268 LVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFEN 347 (532)
Q Consensus 268 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 347 (532)
.++|...++....... +......-+..-...++++.+...+..|.... .-...-.-.+..++...|+.++|...|..
T Consensus 295 ~~~a~~w~~~~~~~~~--~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~ 371 (644)
T PRK11619 295 TDEQAKWRDDVIMRSQ--STSLLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQ 371 (644)
T ss_pred CHHHHHHHHhcccccC--CcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4455555554433221 23333334444446677777777776664322 22344445566666667777777777777
Q ss_pred HHhcCCCCCHhHHHHHHHHHHhcCCcccH-HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCC
Q 009556 348 MKDRGHGKIGAIYAILVDIYGQYGRFRDP-EECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPN 426 (532)
Q Consensus 348 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a-~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 426 (532)
+... ...|..|..- +.|..-.. ...... ....+..+ .-..-+..+...|....|...+..+... .+
T Consensus 372 ~a~~-----~~fYG~LAa~--~Lg~~~~~~~~~~~~-~~~~~~~~--~~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~ 438 (644)
T PRK11619 372 LMQQ-----RGFYPMVAAQ--RLGEEYPLKIDKAPK-PDSALTQG--PEMARVRELMYWNMDNTARSEWANLVAS---RS 438 (644)
T ss_pred HhcC-----CCcHHHHHHH--HcCCCCCCCCCCCCc-hhhhhccC--hHHHHHHHHHHCCCHHHHHHHHHHHHhc---CC
Confidence 6331 1233333211 12221000 000000 00000000 0112234556678888888777776653 23
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHH
Q 009556 427 LVMLNVLINAFGVAGKYKEALSVYH 451 (532)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~A~~~~~ 451 (532)
......+.....+.|.++.+.....
T Consensus 439 ~~~~~~la~~A~~~g~~~~ai~~~~ 463 (644)
T PRK11619 439 KTEQAQLARYAFNQQWWDLSVQATI 463 (644)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHh
Confidence 4444555555566677666665543
No 366
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=64.99 E-value=72 Score=25.69 Aligned_cols=82 Identities=12% Similarity=0.168 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCC-----CCCHhHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCChHhHHH
Q 009556 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGF-----HPSSISYASLIEALASVGR-TLEADAIFQEMVCFGFNPKLRFYNI 152 (532)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----~~~~~~~~~li~~~~~~~~-~~~A~~~~~~~~~~g~~~~~~~~~~ 152 (532)
..|.++......+++...+.+++.+..... ..+..+|..++.+..+... ---+..+|..+.+.+.+.+..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 356677766666777777666666643210 2234456666666655444 3335566666666666666666666
Q ss_pred HHHHHHhc
Q 009556 153 LLRGFLKK 160 (532)
Q Consensus 153 li~~~~~~ 160 (532)
++.++.+.
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 66666554
No 367
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=64.82 E-value=23 Score=22.70 Aligned_cols=35 Identities=17% Similarity=0.285 Sum_probs=17.4
Q ss_pred HHHHHHhcCCcChHHHHHHHHHhCCCCCCHHHHHHHH
Q 009556 468 LMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQ 504 (532)
Q Consensus 468 l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~ 504 (532)
+.-++.+.|++++|.+..+.+.+ +.|+..-...|.
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHH
Confidence 33455556666666666666555 455554444433
No 368
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=64.80 E-value=1.4e+02 Score=29.01 Aligned_cols=74 Identities=16% Similarity=0.183 Sum_probs=39.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009556 396 CILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIR 474 (532)
Q Consensus 396 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 474 (532)
..|+.-|...|+..+|...++++.--- -.....+.+++.+.-+.|+-...+.++++.-..|+ .|-+.+-++|-+
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPf-FhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl----IT~nQMtkGf~R 586 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPF-FHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL----ITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCc-chHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc----eeHHHhhhhhhh
Confidence 345556666666666666666543110 11234556666666666666655666555554432 334444444443
No 369
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=64.60 E-value=17 Score=25.47 Aligned_cols=46 Identities=11% Similarity=0.151 Sum_probs=21.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCcChHHHH
Q 009556 439 VAGKYKEALSVYHLMKDIGISPD--LVTYSTLMKAFIRAKKFHKVPEI 484 (532)
Q Consensus 439 ~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~ 484 (532)
...+.++|+..|....+.-..|. ..++..|+.+++..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555544322211 12444555555555655554443
No 370
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=64.26 E-value=7.2 Score=30.51 Aligned_cols=32 Identities=28% Similarity=0.456 Sum_probs=22.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009556 439 VAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAF 472 (532)
Q Consensus 439 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 472 (532)
..|.-.+|-.+|++|.+.|-+||. |+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 345566777788888888877775 77776554
No 371
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=64.03 E-value=90 Score=26.45 Aligned_cols=67 Identities=19% Similarity=0.283 Sum_probs=34.3
Q ss_pred CCCCChhhHHHHHHHHHHc----CChHHHHHHHHHHHHcCCCCCHh----HHHHHHHHHHhcCCHHHHHHHHHHH
Q 009556 72 GEEFSGNSYNKSIQYCCKL----GDIDEAMALLAQMQALGFHPSSI----SYASLIEALASVGRTLEADAIFQEM 138 (532)
Q Consensus 72 ~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~~~~~----~~~~li~~~~~~~~~~~A~~~~~~~ 138 (532)
|--++...+|.++..+.+. ++.+-++.+=.+...++..++-. ....=+..|-+.|++.+.-.+|-..
T Consensus 3 Gm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv 77 (233)
T PF14669_consen 3 GMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINV 77 (233)
T ss_pred cccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhH
Confidence 3445667777777776554 34444444444455554444332 2222334555566666555555443
No 372
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=63.57 E-value=23 Score=29.57 Aligned_cols=115 Identities=17% Similarity=0.174 Sum_probs=67.4
Q ss_pred cccHHHHHHHHHHcCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHhccC-----CCCCCH-HHHHHHHHHHHhcC--
Q 009556 373 FRDPEECIAALKLEGLQPSGSM---FCILANAYAQQGLCEQTVKVLQLMEPE-----GIEPNL-VMLNVLINAFGVAG-- 441 (532)
Q Consensus 373 ~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~p~~-~~~~~li~~~~~~g-- 441 (532)
++.|.+..+.....+ +.|... |...+.-+++.....++.+++++.... .+.|+- .++..+..+|...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 345566666544443 334333 445555566667778888888877543 345655 67778888877654
Q ss_pred --C-------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCC
Q 009556 442 --K-------YKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPD 496 (532)
Q Consensus 442 --~-------~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~ 496 (532)
+ +++|.+.|++..+ ..|+..+|+.-+.... +|-++..++.+.+..+.
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~------kap~lh~e~~~~~~~~q 141 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAA------KAPELHMEIHKQGLGQQ 141 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH------THHHHHHHHHHSSS---
T ss_pred cCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH------hhHHHHHHHHHHHhhhh
Confidence 3 4445555555554 4689999988887763 58888888887765544
No 373
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=62.83 E-value=57 Score=25.38 Aligned_cols=46 Identities=13% Similarity=0.313 Sum_probs=31.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 009556 306 ALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDR 351 (532)
Q Consensus 306 A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 351 (532)
..+-++.+..-.+.|++......+.+|.+.+++..|.++|+.+...
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3344445555567777777777777777777777777777766543
No 374
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=61.39 E-value=81 Score=28.92 Aligned_cols=88 Identities=10% Similarity=0.140 Sum_probs=54.8
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----------cCCcChH
Q 009556 412 VKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIR----------AKKFHKV 481 (532)
Q Consensus 412 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----------~g~~~~a 481 (532)
.++++.+.+.++.|.-..+..+.-.+.+.=.+.+.+.+|+.+.. |+.-|..|+..|+. .|++..-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 35667777777777777777777777777777777888877765 23336666665553 4666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 009556 482 PEIYKQMESSGCTPDRKARQILQSALV 508 (532)
Q Consensus 482 ~~~~~~m~~~g~~p~~~t~~~l~~a~~ 508 (532)
.++++.- ...|..+.-.+.+.+.
T Consensus 338 mkLLQ~y----p~tdi~~~l~~A~~Lr 360 (370)
T KOG4567|consen 338 MKLLQNY----PTTDISKMLAVADSLR 360 (370)
T ss_pred HHHHhcC----CCCCHHHHHHHHHHHH
Confidence 6555433 3335555555555554
No 375
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=61.28 E-value=1.1e+02 Score=26.59 Aligned_cols=64 Identities=9% Similarity=-0.029 Sum_probs=38.1
Q ss_pred hHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 009556 147 LRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSK 211 (532)
Q Consensus 147 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 211 (532)
+.+||.|.--+...|+++.|.+.|+...+.++.-+-...|--|. +.-.|++.-|.+-+...-+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHhc
Confidence 46677777777778888888888887777543222222222222 22356777777666665554
No 376
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.56 E-value=2.3e+02 Score=29.91 Aligned_cols=102 Identities=16% Similarity=0.101 Sum_probs=64.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCC---ChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc
Q 009556 119 IEALASVGRTLEADAIFQEMVCFGFNP---KLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNA 195 (532)
Q Consensus 119 i~~~~~~~~~~~A~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 195 (532)
++-+.+.+.+++|+++-+.... ..| -...+...|..+.-.|++++|-...-.|.. -+..-|..-+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccc
Confidence 5566777888888877665442 233 235567778888888888888888877775 3666676666666666
Q ss_pred CChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHc
Q 009556 196 GRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRD 229 (532)
Q Consensus 196 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 229 (532)
++......+ +.......+...|..++..+..
T Consensus 437 ~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 655443222 2222223455667777766665
No 377
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=60.47 E-value=20 Score=18.64 Aligned_cols=26 Identities=27% Similarity=0.255 Sum_probs=14.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH
Q 009556 80 YNKSIQYCCKLGDIDEAMALLAQMQA 105 (532)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~ 105 (532)
|..+...+...|++++|...|+...+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 44555555566666666666655543
No 378
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.76 E-value=1.3e+02 Score=26.99 Aligned_cols=201 Identities=10% Similarity=0.085 Sum_probs=116.7
Q ss_pred CCCcCHHhHHHHHHHH-HcCCChHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHhccCCHHHHHHHHHHHHhC---CC-
Q 009556 212 GFQLNSFVYGKVIGLY-RDNGMWKKAVGIVEEIREMGLSLDRQ---IYNSIIDTFGKYGELVEALEVFEKMQQE---SI- 283 (532)
Q Consensus 212 ~~~~~~~~~~~ll~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~- 283 (532)
+-.||+..-+....+- .+..+.++|+.-|++.++...+.... ....+|..+.+.+++++..+.+.++..- .+
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 4456655444333221 24457888999998888763332222 3455677888899999988888877531 11
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----C-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC---
Q 009556 284 -RPDIVTWNSLIRWHCKAGDVAKALELFTQMQE----Q-GFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHG--- 354 (532)
Q Consensus 284 -~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--- 354 (532)
.-+..+.|+++.....+.+.+-..+.++.-.+ . +-..--.|-..+...|...+.+....+++.++....-.
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 12345566777666666666655555554321 1 11111123345666777777888888888877654211
Q ss_pred -C-------CHhHHHHHHHHHHhcCCcccHHHHHHHHHHc-CCCCCHHHHHHHHHHH-----HhcCCHHHHHH
Q 009556 355 -K-------IGAIYAILVDIYGQYGRFRDPEECIAALKLE-GLQPSGSMFCILANAY-----AQQGLCEQTVK 413 (532)
Q Consensus 355 -~-------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~-----~~~g~~~~A~~ 413 (532)
. -..+|..-|++|....+-.....++++.... ...|.+... .+|+-| .+.|.+++|..
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHh
Confidence 1 1345666677787777777777777765432 224444433 334333 45677777654
No 379
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=59.45 E-value=15 Score=28.80 Aligned_cols=33 Identities=15% Similarity=0.219 Sum_probs=25.9
Q ss_pred HHhcCCcChHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 009556 472 FIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSA 506 (532)
Q Consensus 472 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~a 506 (532)
....|.-.+|.++|++|+++|-.||. |+.|+.+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 34457778899999999999999987 4555544
No 380
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=58.95 E-value=4.1e+02 Score=32.34 Aligned_cols=152 Identities=7% Similarity=-0.013 Sum_probs=90.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCC--CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHh
Q 009556 82 KSIQYCCKLGDIDEAMALLAQMQALGFH--PSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLK 159 (532)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 159 (532)
++..+=.+++.+.+|+-.+++-.....+ .....|-.+...|...++++...-+...-. .+...+ .-|-....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-----a~~sl~-~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF-----ADPSLY-QQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh-----cCccHH-HHHHHHHh
Confidence 4455667889999999999884211111 122233444448888888888777766411 122222 23445566
Q ss_pred cCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHH-HHHHHHHcCCChHHHHH
Q 009556 160 KGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYG-KVIGLYRDNGMWKKAVG 238 (532)
Q Consensus 160 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~ll~~~~~~~~~~~a~~ 238 (532)
.|++..|...|+.+.+.+. +....++-++......|.++...-..+-.... ..+....++ .=+.+--+.++++....
T Consensus 1462 ~g~~~da~~Cye~~~q~~p-~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDP-DKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCCC-ccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 7999999999999988654 34667777777666777777776655544433 122222222 22334456677766665
Q ss_pred HHH
Q 009556 239 IVE 241 (532)
Q Consensus 239 ~~~ 241 (532)
.+.
T Consensus 1540 ~l~ 1542 (2382)
T KOG0890|consen 1540 YLS 1542 (2382)
T ss_pred hhh
Confidence 544
No 381
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=57.95 E-value=35 Score=22.70 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=14.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 009556 115 YASLIEALASVGRTLEADAIFQEMV 139 (532)
Q Consensus 115 ~~~li~~~~~~~~~~~A~~~~~~~~ 139 (532)
.-.+|.++...|++++|.+..+.+.
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3345566666666666666655554
No 382
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=57.94 E-value=63 Score=27.12 Aligned_cols=67 Identities=21% Similarity=0.211 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhccCCCCCC--HHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 009556 408 CEQTVKVLQLMEPEGIEPN--LVML-----NVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKK 477 (532)
Q Consensus 408 ~~~A~~~~~~m~~~~~~p~--~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 477 (532)
++.|+.+|+.+.+.--.|+ .... -..+-.|.+.|.+++|.+++++.... |+......-+....+..+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHHccc
Confidence 5677777777665432221 1111 12334566677777777777766652 444444444444444443
No 383
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=57.44 E-value=35 Score=23.02 Aligned_cols=50 Identities=12% Similarity=0.104 Sum_probs=36.2
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc
Q 009556 75 FSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASV 125 (532)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 125 (532)
|....++.++..+++..-.++++..++++...| ..+..+|..-++.+++.
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLARE 55 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 455667888888888888888888888888877 35667777777766654
No 384
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=57.30 E-value=1.9e+02 Score=27.98 Aligned_cols=57 Identities=14% Similarity=0.054 Sum_probs=40.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHh--HHHHHHHHHH--hcCCHHHHHHHHHHHHHC
Q 009556 84 IQYCCKLGDIDEAMALLAQMQALGFHPSSI--SYASLIEALA--SVGRTLEADAIFQEMVCF 141 (532)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~li~~~~--~~~~~~~A~~~~~~~~~~ 141 (532)
+..+.+.+++..|.++|+.+..+ ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 33455889999999999999887 555554 4455555555 345678888888887754
No 385
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=56.90 E-value=42 Score=23.60 Aligned_cols=45 Identities=16% Similarity=0.037 Sum_probs=23.0
Q ss_pred HcCChHHHHHHHHHHHHcCCCC-CH-hHHHHHHHHHHhcCCHHHHHH
Q 009556 89 KLGDIDEAMALLAQMQALGFHP-SS-ISYASLIEALASVGRTLEADA 133 (532)
Q Consensus 89 ~~g~~~~A~~~~~~m~~~~~~~-~~-~~~~~li~~~~~~~~~~~A~~ 133 (532)
..++-++|+..+....+.-..+ +. .++..++.+++..|++.++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666655542111 11 234455566666666555544
No 386
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=56.80 E-value=1e+02 Score=24.82 Aligned_cols=50 Identities=10% Similarity=0.187 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcC
Q 009556 181 NQETYEILLDYHVNAGR-LDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDN 230 (532)
Q Consensus 181 ~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 230 (532)
+...|..++.+..+... ---+..+|+-|.+.+.+++..-|..++.++.+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 33455666665544444 334455666666655666666666666665554
No 387
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=56.50 E-value=1.2e+02 Score=25.53 Aligned_cols=22 Identities=9% Similarity=0.210 Sum_probs=12.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 009556 189 LDYHVNAGRLDDTWLIINEMRS 210 (532)
Q Consensus 189 i~~~~~~~~~~~a~~~~~~m~~ 210 (532)
+..|.+.|.+++|.+++++...
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 3345556666666666655554
No 388
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=56.33 E-value=55 Score=23.93 Aligned_cols=53 Identities=23% Similarity=0.202 Sum_probs=31.1
Q ss_pred HHcCChHHHHHHHHHHHH----cCCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009556 88 CKLGDIDEAMALLAQMQA----LGFHPS----SISYASLIEALASVGRTLEADAIFQEMVC 140 (532)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~----~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 140 (532)
.+.|++.+|++.+.+.-+ .+.... ....-.+.......|++++|.+.+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 577888888665555433 322221 12223344556677888888888877764
No 389
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=56.21 E-value=74 Score=22.94 Aligned_cols=12 Identities=0% Similarity=0.102 Sum_probs=4.5
Q ss_pred ChHHHHHHHHHH
Q 009556 197 RLDDTWLIINEM 208 (532)
Q Consensus 197 ~~~~a~~~~~~m 208 (532)
+.+.|.+++..+
T Consensus 51 ~~~~ar~LL~~L 62 (88)
T cd08819 51 NESGARELLKRI 62 (88)
T ss_pred cHHHHHHHHHHh
Confidence 333333333333
No 390
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=56.11 E-value=1.3e+02 Score=28.18 Aligned_cols=67 Identities=22% Similarity=0.265 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhh
Q 009556 444 KEALSVYHLMKDIGISPDL----VTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSALVVLEQ 512 (532)
Q Consensus 444 ~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~a~~~~~~ 512 (532)
++...++++++.. .|+. ..|.+++......|.+++++.+|++.+..|-.|-......++..+....+
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~~k~~ 190 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILKMKSQ 190 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhh
Confidence 4566666666653 3443 35777778888888888889999999888888888888888888774433
No 391
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=56.02 E-value=1.8e+02 Score=27.34 Aligned_cols=98 Identities=11% Similarity=-0.053 Sum_probs=59.3
Q ss_pred CCCHhHHHHHHHHHHhcC------------CHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 009556 109 HPSSISYASLIEALASVG------------RTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDM 176 (532)
Q Consensus 109 ~~~~~~~~~li~~~~~~~------------~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 176 (532)
+.|+.+|-.++..--..- -.+.-+.++++.++.+ +.+.......+..+.+..+.+...+.++++...
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 456666666665432221 1345566777777664 456666777777777777777777777777765
Q ss_pred CCCcCHHHHHHHHHHHHh---cCChHHHHHHHHHH
Q 009556 177 GICRNQETYEILLDYHVN---AGRLDDTWLIINEM 208 (532)
Q Consensus 177 ~~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~m 208 (532)
.. -+...|...++.... .-.++...++|.+.
T Consensus 95 ~~-~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~ 128 (321)
T PF08424_consen 95 NP-GSPELWREYLDFRQSNFASFTVSDVRDVYEKC 128 (321)
T ss_pred CC-CChHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 32 356667777665544 22355555555544
No 392
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=55.54 E-value=74 Score=25.69 Aligned_cols=45 Identities=13% Similarity=0.135 Sum_probs=21.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcC
Q 009556 186 EILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDN 230 (532)
Q Consensus 186 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 230 (532)
..++..+.+.++.-.|.++++++.+.+...+..|....++.+...
T Consensus 24 ~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~ 68 (145)
T COG0735 24 LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEA 68 (145)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHC
Confidence 344444444444455555555555554444444443334443333
No 393
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=55.18 E-value=1.5e+02 Score=27.71 Aligned_cols=51 Identities=14% Similarity=0.099 Sum_probs=23.2
Q ss_pred cCCHHHHHHHHHHhccC---CCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHH
Q 009556 405 QGLCEQTVKVLQLMEPE---GIEPNLVML--NVLINAFGVAGKYKEALSVYHLMKD 455 (532)
Q Consensus 405 ~g~~~~A~~~~~~m~~~---~~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~ 455 (532)
.++.++|.++++++.+. .-.|+.+.| ....+++...|+.+++.+++++..+
T Consensus 88 ~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 88 ISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred hccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 33455555555444321 113343333 2333444455555555555555544
No 394
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=54.05 E-value=50 Score=28.18 Aligned_cols=32 Identities=13% Similarity=0.103 Sum_probs=22.0
Q ss_pred CCCHHHHHHHHHHHHhcCCcChHHHHHHHHHh
Q 009556 459 SPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES 490 (532)
Q Consensus 459 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (532)
.|++.+|..++.++...|+.++|.+..+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46666677667777777777777776666665
No 395
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=53.63 E-value=1.2e+02 Score=30.74 Aligned_cols=131 Identities=11% Similarity=-0.056 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 009556 95 EAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVME 174 (532)
Q Consensus 95 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 174 (532)
-|-.++..|..- +.|--.+.|...-.....|+...|...+............+....|.+...+.|....|..++.+..
T Consensus 591 ~~~~~~~~~~~~-~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l 669 (886)
T KOG4507|consen 591 IGSFLFHAINKP-NAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQAL 669 (886)
T ss_pred HHHHHHHHhcCC-CCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHH
Confidence 344455555422 2333333343333344568888888877766543211222334456666677777788888887776
Q ss_pred HcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHH
Q 009556 175 DMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYR 228 (532)
Q Consensus 175 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 228 (532)
... ...+.++-.+.+++....+++.|++.|++..+.... +...-+.|...-|
T Consensus 670 ~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~-~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 670 AIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTK-CPECENSLKLIRC 721 (886)
T ss_pred hhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCC-ChhhHHHHHHHHH
Confidence 654 355667788888888899999999999888776433 4555566655444
No 396
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=53.14 E-value=33 Score=22.83 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=10.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 009556 432 VLINAFGVAGKYKEALSVYHLMK 454 (532)
Q Consensus 432 ~li~~~~~~g~~~~A~~~~~~m~ 454 (532)
.+|.++...|++++|.++++++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34445555555555555544443
No 397
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=53.04 E-value=44 Score=28.56 Aligned_cols=31 Identities=26% Similarity=0.264 Sum_probs=15.5
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009556 109 HPSSISYASLIEALASVGRTLEADAIFQEMV 139 (532)
Q Consensus 109 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 139 (532)
.|++..|..++.++...|+.++|.++..++.
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455555555555555555555555444444
No 398
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=51.68 E-value=77 Score=31.89 Aligned_cols=87 Identities=11% Similarity=0.087 Sum_probs=42.4
Q ss_pred hcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 009556 194 NAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALE 273 (532)
Q Consensus 194 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 273 (532)
..|+...|...+.........-..+....|.....+.|....|-.++.+.+... ...+.++..+.++|.-..+++.|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHH
Confidence 345555555555554433222222333344444445555555555555544443 2334445555555555555666666
Q ss_pred HHHHHHhC
Q 009556 274 VFEKMQQE 281 (532)
Q Consensus 274 ~~~~m~~~ 281 (532)
.|++..+.
T Consensus 698 ~~~~a~~~ 705 (886)
T KOG4507|consen 698 AFRQALKL 705 (886)
T ss_pred HHHHHHhc
Confidence 55555544
No 399
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=51.43 E-value=96 Score=31.78 Aligned_cols=74 Identities=22% Similarity=0.275 Sum_probs=45.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhccC--CCCCCHHHHHHHHHHHHhcCCHH------HHHHHHHHHHHCCCCCCHHHHHHH
Q 009556 397 ILANAYAQQGLCEQTVKVLQLMEPE--GIEPNLVMLNVLINAFGVAGKYK------EALSVYHLMKDIGISPDLVTYSTL 468 (532)
Q Consensus 397 ~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~------~A~~~~~~m~~~~~~p~~~~~~~l 468 (532)
+|..+|...|++..+.++++..... |-+.=...+|..|+.+.+.|.++ .|.+++++.. +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 6777888888888888888777654 22223456677777777777643 2344444333 33466677666
Q ss_pred HHHHH
Q 009556 469 MKAFI 473 (532)
Q Consensus 469 ~~~~~ 473 (532)
+.+-.
T Consensus 110 ~~~sl 114 (1117)
T COG5108 110 CQASL 114 (1117)
T ss_pred HHhhc
Confidence 65543
No 400
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=50.80 E-value=91 Score=24.43 Aligned_cols=43 Identities=19% Similarity=0.411 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCcChHHHHHHH
Q 009556 445 EALSVYHLMKDIGISPD-LVTYSTLMKAFIRAKKFHKVPEIYKQ 487 (532)
Q Consensus 445 ~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 487 (532)
++.++|+.|...|+--. ...|......+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 55666666655444332 33455555555566666666666553
No 401
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=50.53 E-value=71 Score=24.20 Aligned_cols=43 Identities=19% Similarity=0.195 Sum_probs=30.7
Q ss_pred CCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 009556 70 NSGEEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLI 119 (532)
Q Consensus 70 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 119 (532)
-+|..|+ +|+.+.++...++|+++.+.|.++| ..+...-+.|-
T Consensus 60 ~sGy~Pt------ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr 102 (128)
T PF09868_consen 60 FSGYNPT------VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELR 102 (128)
T ss_pred ccCCCCh------HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 3566664 5667788899999999999999998 45554444333
No 402
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=50.26 E-value=36 Score=31.10 Aligned_cols=29 Identities=21% Similarity=0.361 Sum_probs=13.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCC
Q 009556 255 YNSIIDTFGKYGELVEALEVFEKMQQESI 283 (532)
Q Consensus 255 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 283 (532)
|+..|....+.||+++|+.++++.++.|.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~ 288 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGS 288 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 33444444444555555555444444443
No 403
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=49.13 E-value=1.9e+02 Score=25.65 Aligned_cols=114 Identities=11% Similarity=0.080 Sum_probs=62.2
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHh-HHHHHHHHHhcCChh
Q 009556 87 CCKLGDIDEAMALLAQMQALGFHPSS-ISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRF-YNILLRGFLKKGLLG 164 (532)
Q Consensus 87 ~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~ 164 (532)
|....++..|+..|.+.... .|++ .-|+.-+-.+.+..+++.+.+--.+.++. .||..- .--+.........++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcccc
Confidence 34456677788877776665 4555 44566666777777777776666655543 344433 233444455566677
Q ss_pred HHHHHHHHHHHc----CCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 009556 165 LGSRLLMVMEDM----GICRNQETYEILLDYHVNAGRLDDTWLI 204 (532)
Q Consensus 165 ~A~~~~~~m~~~----~~~~~~~~~~~li~~~~~~~~~~~a~~~ 204 (532)
+|+..+.+..+. .+.+-...+..|..+--+.=...+..++
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri 139 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRI 139 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHH
Confidence 777766665332 2333333444444443333333333333
No 404
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=48.94 E-value=1.4e+02 Score=27.66 Aligned_cols=52 Identities=25% Similarity=0.305 Sum_probs=32.7
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009556 258 IIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQE 315 (532)
Q Consensus 258 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 315 (532)
++..+.+..+.....+.+..+. ....-...+..+...|++..|++++.+..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4444555555555555555554 344445667777788888888888777654
No 405
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=48.32 E-value=2.6e+02 Score=27.01 Aligned_cols=53 Identities=17% Similarity=0.128 Sum_probs=27.6
Q ss_pred HhcCChHHHHHHHHHHHHCCCCcCHH--hHHHHHHHHH--cCCChHHHHHHHHHHHHc
Q 009556 193 VNAGRLDDTWLIINEMRSKGFQLNSF--VYGKVIGLYR--DNGMWKKAVGIVEEIREM 246 (532)
Q Consensus 193 ~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 246 (532)
...+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3556666666666666655 333333 2233333332 345566666666665543
No 406
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=47.03 E-value=1.2e+02 Score=22.65 Aligned_cols=51 Identities=20% Similarity=0.344 Sum_probs=29.7
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 009556 261 TFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQG 317 (532)
Q Consensus 261 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 317 (532)
.+...|++++|..+.+.+ ..||...|-.+-. .+.|..+++...+.+|..+|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 455666777776665554 2466666655433 35555666666666665554
No 407
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.86 E-value=4e+02 Score=28.68 Aligned_cols=47 Identities=13% Similarity=0.300 Sum_probs=29.6
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009556 257 SIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQ 312 (532)
Q Consensus 257 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 312 (532)
+....+...|+.+++..+-.-|.+ |..++..+.+.+.+++|++++..
T Consensus 509 tv~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~ 555 (911)
T KOG2034|consen 509 TVYQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLN 555 (911)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444556777766665555442 55677777777888888777654
No 408
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=45.85 E-value=53 Score=32.03 Aligned_cols=104 Identities=15% Similarity=0.028 Sum_probs=68.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCC
Q 009556 84 IQYCCKLGDIDEAMALLAQMQALGFHPS-SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGL 162 (532)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 162 (532)
.+.+.+.++++.|+.++.++.+. .|| +..|..-..++.+.+++..|+.=+....+.. +.....|---..++.+.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHH
Confidence 45567788999999999999987 454 4445555588888999999888777777654 1222233333344445566
Q ss_pred hhHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 009556 163 LGLGSRLLMVMEDMGICRNQETYEILLDYH 192 (532)
Q Consensus 163 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 192 (532)
+.+|...|+.... +.|+..-....+.-|
T Consensus 88 ~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 88 FKKALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 6777777776665 456766666555544
No 409
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=45.27 E-value=1.8e+02 Score=27.98 Aligned_cols=60 Identities=15% Similarity=0.110 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCChHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 009556 115 YASLIEALASVGRTLEADAIFQEMVCF--GFNPKLRFYNILLRGFLKKGLLGLGSRLLMVME 174 (532)
Q Consensus 115 ~~~li~~~~~~~~~~~A~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 174 (532)
.-.|++.+.-.|+.+...+..+.+.+. |..|...+--.+.-+|.-.|++.+|.+.|-.+.
T Consensus 238 L~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 238 LLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred HHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 334455555566655555555555432 222222111233445555566666666665543
No 410
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=45.22 E-value=16 Score=33.85 Aligned_cols=92 Identities=12% Similarity=0.026 Sum_probs=58.1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCH-HHHHHHHHHHHhcCChHHHH
Q 009556 124 SVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQ-ETYEILLDYHVNAGRLDDTW 202 (532)
Q Consensus 124 ~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~~~~~~a~ 202 (532)
..|.++.|++.|...++.+ ++....|..-.+.+.+.++...|++=++...+.+ ||. ..|-.--.+....|++++|.
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--PDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccC--cccccccchhhHHHHHhhchHHHH
Confidence 4566777777777777665 4566666666777777777777777666666532 222 23333333444567777777
Q ss_pred HHHHHHHHCCCCcCHH
Q 009556 203 LIINEMRSKGFQLNSF 218 (532)
Q Consensus 203 ~~~~~m~~~~~~~~~~ 218 (532)
..+....+.++.+...
T Consensus 203 ~dl~~a~kld~dE~~~ 218 (377)
T KOG1308|consen 203 HDLALACKLDYDEANS 218 (377)
T ss_pred HHHHHHHhccccHHHH
Confidence 7777777776655443
No 411
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=44.97 E-value=1.2e+02 Score=21.97 Aligned_cols=35 Identities=9% Similarity=0.080 Sum_probs=16.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 009556 265 YGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVA 304 (532)
Q Consensus 265 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 304 (532)
.|+.+.|.++++.+. +| ...|...+.++-..|..+
T Consensus 49 ~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 49 HGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHE 83 (88)
T ss_pred cCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchh
Confidence 345555555555554 31 223444555554444433
No 412
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=44.66 E-value=1.8e+02 Score=24.18 Aligned_cols=41 Identities=2% Similarity=-0.137 Sum_probs=20.6
Q ss_pred HHHhcCCcChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHh
Q 009556 471 AFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSALVVLE 511 (532)
Q Consensus 471 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~a~~~~~ 511 (532)
.+...++.-.|.++++.+.+.+..++..|..-.++.+...+
T Consensus 34 ~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 34 LMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 33333444455555555555555555555555555544443
No 413
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=44.08 E-value=1e+02 Score=21.69 Aligned_cols=38 Identities=16% Similarity=0.219 Sum_probs=28.5
Q ss_pred CCCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhH
Q 009556 70 NSGEEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSIS 114 (532)
Q Consensus 70 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 114 (532)
.+|..|+ +++.+.++.--++|+++++.|.++| ..+...
T Consensus 30 ~~gy~Pt------V~D~L~rCdT~EEAlEii~yleKrG-Ei~~E~ 67 (98)
T COG4003 30 FSGYNPT------VIDFLRRCDTEEEALEIINYLEKRG-EITPEM 67 (98)
T ss_pred cCCCCch------HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHH
Confidence 4566664 5677788888999999999999988 455443
No 414
>PRK13342 recombination factor protein RarA; Reviewed
Probab=43.04 E-value=3.3e+02 Score=26.67 Aligned_cols=46 Identities=26% Similarity=0.185 Sum_probs=29.0
Q ss_pred HHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 009556 291 NSLIRWHCK---AGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELG 336 (532)
Q Consensus 291 ~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 336 (532)
..+++++.+ .++++.|+.++..|.+.|..|....-..++.++...|
T Consensus 231 ~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 231 YDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 344444444 4788888888999888887766554444444444333
No 415
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=42.08 E-value=49 Score=32.25 Aligned_cols=106 Identities=11% Similarity=0.068 Sum_probs=54.9
Q ss_pred HhcCCHHHHHHHHHHhccCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCcCh
Q 009556 403 AQQGLCEQTVKVLQLMEPEGIEPNLVMLNV-LINAFGVAGKYKEALSVYHLMKDIGISPDL-VTYSTLMKAFIRAKKFHK 480 (532)
Q Consensus 403 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~ 480 (532)
...+.++.|..++.+.++. .||...|-+ -..++.+.+++..|..=+..+++.. |+. ..|..=..++.+.+++.+
T Consensus 15 l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred cccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHHHHHH
Confidence 3445666666666666654 454433322 2256666666666665555555432 221 122222233444455555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhh
Q 009556 481 VPEIYKQMESSGCTPDRKARQILQSALVVLEQRR 514 (532)
Q Consensus 481 a~~~~~~m~~~g~~p~~~t~~~l~~a~~~~~~~~ 514 (532)
|...|+.... +.|+..-....+..|-....+.
T Consensus 91 A~~~l~~~~~--l~Pnd~~~~r~~~Ec~~~vs~~ 122 (476)
T KOG0376|consen 91 ALLDLEKVKK--LAPNDPDATRKIDECNKIVSEE 122 (476)
T ss_pred HHHHHHHhhh--cCcCcHHHHHHHHHHHHHHHHH
Confidence 6555555554 6676666666666665544443
No 416
>PRK10941 hypothetical protein; Provisional
Probab=41.90 E-value=2.7e+02 Score=25.34 Aligned_cols=78 Identities=9% Similarity=-0.156 Sum_probs=51.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCcCHHHHHHHHHHHH
Q 009556 115 YASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMG-ICRNQETYEILLDYHV 193 (532)
Q Consensus 115 ~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~ 193 (532)
.+.+-.+|.+.++++.|+...+.+.... +.+..-+.--.-.|.+.|.+..|..=++...+.- -.|+.......+....
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~ 262 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIE 262 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence 3456667778888888888888888765 4455666666667888888888877777665432 2344545454554443
No 417
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=41.79 E-value=67 Score=24.37 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=12.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH
Q 009556 80 YNKSIQYCCKLGDIDEAMALLAQMQA 105 (532)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~ 105 (532)
|..|+..|...|..++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 44455555555555555555544443
No 418
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=41.66 E-value=2.7e+02 Score=25.21 Aligned_cols=39 Identities=13% Similarity=0.089 Sum_probs=15.9
Q ss_pred HHHHcCCHHHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHc
Q 009556 296 WHCKAGDVAKALELFTQM----QEQGFYPDPKIFITIISCLGE 334 (532)
Q Consensus 296 ~~~~~g~~~~A~~~~~~m----~~~~~~~~~~~~~~ll~~~~~ 334 (532)
.+.+.|+...|-++-.-+ .+.+.++|......++..+..
T Consensus 19 ~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~ 61 (260)
T PF04190_consen 19 ILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISL 61 (260)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHH
T ss_pred HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 345566655554443332 233455555444444444433
No 419
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=41.43 E-value=1.4e+02 Score=21.80 Aligned_cols=53 Identities=17% Similarity=0.127 Sum_probs=28.0
Q ss_pred HhcCCHHHHHHHHHHhc----cCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009556 403 AQQGLCEQTVKVLQLME----PEGIEPN----LVMLNVLINAFGVAGKYKEALSVYHLMKD 455 (532)
Q Consensus 403 ~~~g~~~~A~~~~~~m~----~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 455 (532)
.+.|++.+|.+.+.+.. ..+.... ....-.+.......|++++|.+.+++.++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35567776655444332 2221111 12222344556667888888887777653
No 420
>PRK13342 recombination factor protein RarA; Reviewed
Probab=41.41 E-value=3.5e+02 Score=26.50 Aligned_cols=21 Identities=14% Similarity=0.074 Sum_probs=10.9
Q ss_pred CChHHHHHHHHHHHHCCCCcC
Q 009556 196 GRLDDTWLIINEMRSKGFQLN 216 (532)
Q Consensus 196 ~~~~~a~~~~~~m~~~~~~~~ 216 (532)
.+++.|+..+.+|.+.|..|.
T Consensus 244 sd~~aal~~l~~~l~~G~d~~ 264 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPL 264 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 455555555555555554444
No 421
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.99 E-value=2.6e+02 Score=24.81 Aligned_cols=22 Identities=14% Similarity=0.487 Sum_probs=13.5
Q ss_pred hccCCHHHHHHHHHHHHhCCCC
Q 009556 263 GKYGELVEALEVFEKMQQESIR 284 (532)
Q Consensus 263 ~~~g~~~~A~~~~~~m~~~~~~ 284 (532)
+..+++.+|+++|++.....+.
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 4456667777777776654433
No 422
>PRK14700 recombination factor protein RarA; Provisional
Probab=40.88 E-value=3e+02 Score=25.47 Aligned_cols=36 Identities=17% Similarity=0.150 Sum_probs=20.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 009556 301 GDVAKALELFTQMQEQGFYPDPKIFITIISCLGELG 336 (532)
Q Consensus 301 g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 336 (532)
.|++.|+-++.+|.+.|-.|....-..++.++...|
T Consensus 140 SDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIG 175 (300)
T PRK14700 140 TDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIG 175 (300)
T ss_pred CCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 456666666666666665555544444554544444
No 423
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=40.27 E-value=1.4e+02 Score=21.50 Aligned_cols=43 Identities=16% Similarity=0.232 Sum_probs=30.2
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHh
Q 009556 448 SVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES 490 (532)
Q Consensus 448 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (532)
++|+-....|+..|+..|..++......=-.+...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 6777777777777777777777766666666666677777653
No 424
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=39.86 E-value=1.9e+02 Score=29.76 Aligned_cols=91 Identities=19% Similarity=0.270 Sum_probs=60.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC--CCCChHhHHHHHHHHHhcCChh------HHHHHHHHHHHcCCCcCHHHHHHH
Q 009556 117 SLIEALASVGRTLEADAIFQEMVCFG--FNPKLRFYNILLRGFLKKGLLG------LGSRLLMVMEDMGICRNQETYEIL 188 (532)
Q Consensus 117 ~li~~~~~~~~~~~A~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~------~A~~~~~~m~~~~~~~~~~~~~~l 188 (532)
+++.+|...|++.++.++++...... -+.-...+|..|+.+.+.|.++ .|.+.++... +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 88999999999999999999988643 2333466888888888998765 3333333333 44577788888
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 009556 189 LDYHVNAGRLDDTWLIINEMRS 210 (532)
Q Consensus 189 i~~~~~~~~~~~a~~~~~~m~~ 210 (532)
+.+-...-...-..-++.++..
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 7766553333333444444443
No 425
>PRK09462 fur ferric uptake regulator; Provisional
Probab=39.83 E-value=2e+02 Score=23.21 Aligned_cols=60 Identities=10% Similarity=0.121 Sum_probs=34.5
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhc-CCcChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhh
Q 009556 453 MKDIGISPDLVTYSTLMKAFIRA-KKFHKVPEIYKQMESSGCTPDRKARQILQSALVVLEQR 513 (532)
Q Consensus 453 m~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~a~~~~~~~ 513 (532)
+.+.|++++..= ..++..+... +..-.|.++++.+.+.+...+..|..-.++.+...+--
T Consensus 8 l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 445566555432 2334444443 34667777777777776666666666666666665543
No 426
>PRK10941 hypothetical protein; Provisional
Probab=39.69 E-value=3e+02 Score=25.12 Aligned_cols=78 Identities=10% Similarity=-0.020 Sum_probs=50.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 009556 430 LNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESS-GCTPDRKARQILQSALV 508 (532)
Q Consensus 430 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~l~~a~~ 508 (532)
.+.+-.+|.+.++++.|.++.+.+.... +.|+.-+.--.-.|.+.|.+..|..=++...+. .-.|+.......+.++.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~ 262 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIE 262 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence 3556667788888888888888887652 224545655666678888888888877777653 33445544444444443
No 427
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=39.31 E-value=2.9e+02 Score=24.95 Aligned_cols=27 Identities=11% Similarity=0.178 Sum_probs=23.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHc
Q 009556 80 YNKSIQYCCKLGDIDEAMALLAQMQAL 106 (532)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 106 (532)
.+.+|+.+.+.+....|+.+.+.+...
T Consensus 85 L~~iL~~lL~~~~~~~a~~i~~~y~~l 111 (258)
T PF07064_consen 85 LHHILRHLLRRNLDEEALEIASKYRSL 111 (258)
T ss_pred hHHHHHHHHhcCCcHHHHHHHHHhccC
Confidence 478999999999999999999888754
No 428
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=38.94 E-value=2.2e+02 Score=26.35 Aligned_cols=71 Identities=10% Similarity=0.151 Sum_probs=56.0
Q ss_pred HHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh----------cCChHHH
Q 009556 132 DAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVN----------AGRLDDT 201 (532)
Q Consensus 132 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----------~~~~~~a 201 (532)
.++++.+.+.++.|.-..+.-+.-.+.+.=.+...+.+++.+.. |..-|..|+..|+. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 56888888889999988888888888888888999999999886 33446777776653 5888888
Q ss_pred HHHHHH
Q 009556 202 WLIINE 207 (532)
Q Consensus 202 ~~~~~~ 207 (532)
.++++.
T Consensus 338 mkLLQ~ 343 (370)
T KOG4567|consen 338 MKLLQN 343 (370)
T ss_pred HHHHhc
Confidence 887765
No 429
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=38.92 E-value=1e+02 Score=23.49 Aligned_cols=43 Identities=12% Similarity=0.108 Sum_probs=21.1
Q ss_pred HHHHhcCCcChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhh
Q 009556 470 KAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSALVVLEQ 512 (532)
Q Consensus 470 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~a~~~~~~ 512 (532)
..+...+..-.|.++++.+.+.+..++..|..-.++.+...+-
T Consensus 8 ~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 8 EVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 3333334444555555555555544555555555555544443
No 430
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=38.81 E-value=2.7e+02 Score=27.62 Aligned_cols=68 Identities=24% Similarity=0.275 Sum_probs=44.4
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHh----HHHHHHHHHhcC-Chh
Q 009556 90 LGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRF----YNILLRGFLKKG-LLG 164 (532)
Q Consensus 90 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~----~~~li~~~~~~g-~~~ 164 (532)
..++++|++..++..+.+-+.+. |-...|.++|.++.++|+.||..| ....+.+|+-.| .++
T Consensus 207 ~~~ldeal~~~~~a~~~~~~~SI-------------g~~GNaadv~~~l~~r~i~pDlvtDQTSaHdp~~GY~P~g~t~e 273 (545)
T TIGR01228 207 TDSLDEALARAEEAKAEGKPISI-------------GLLGNAAEVLPELLKRGVVPDVVTDQTSAHDPLNGYIPEGYTVE 273 (545)
T ss_pred cCCHHHHHHHHHHHHHcCCceEE-------------EeeccHHHHHHHHHHcCCCCCCcCCCCcccCcccccCCCCCCHH
Confidence 36778888888888777632221 334567888999999999888765 233444566666 456
Q ss_pred HHHHHH
Q 009556 165 LGSRLL 170 (532)
Q Consensus 165 ~A~~~~ 170 (532)
++.++.
T Consensus 274 e~~~lr 279 (545)
T TIGR01228 274 DADKLR 279 (545)
T ss_pred HHHHHH
Confidence 665544
No 431
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=37.95 E-value=1.6e+02 Score=22.18 Aligned_cols=60 Identities=12% Similarity=0.068 Sum_probs=34.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcC--CHHHHHHHHHHHHHCC
Q 009556 81 NKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVG--RTLEADAIFQEMVCFG 142 (532)
Q Consensus 81 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~--~~~~A~~~~~~~~~~g 142 (532)
..+|..|...|+.++|...+.++.... ........++..+...+ ..+....++..+.+.+
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~~--~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~ 67 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLPS--QHHEVVKVILECALEEKKSYREYYSKLLSHLCKRK 67 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-GG--GHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCc--cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcC
Confidence 567888889999999999998864221 12223334444444442 2233555666666554
No 432
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=37.38 E-value=3.3e+02 Score=24.97 Aligned_cols=68 Identities=9% Similarity=-0.006 Sum_probs=34.7
Q ss_pred hHhHHHHHHHHHhcCChhHHHHHHHHHHH----cCCCcCHHHHHHHH-HHHHhcCChHHHHHHHHHHHHCCCC
Q 009556 147 LRFYNILLRGFLKKGLLGLGSRLLMVMED----MGICRNQETYEILL-DYHVNAGRLDDTWLIINEMRSKGFQ 214 (532)
Q Consensus 147 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~~~~~li-~~~~~~~~~~~a~~~~~~m~~~~~~ 214 (532)
...+..+...|++-++.+.+.++.++..+ .|.+.|+...-.-+ -.|....-+++.++..+.|.+.|..
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgD 187 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGD 187 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCC
Confidence 45566667777777777766665554433 34433433222211 1222233345666666666665543
No 433
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=37.15 E-value=1.9e+02 Score=25.94 Aligned_cols=58 Identities=14% Similarity=0.076 Sum_probs=36.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH----CCC-CCCHHHHHHHHHHHHhcCCcChHHHHHHHH
Q 009556 431 NVLINAFGVAGKYKEALSVYHLMKD----IGI-SPDLVTYSTLMKAFIRAKKFHKVPEIYKQM 488 (532)
Q Consensus 431 ~~li~~~~~~g~~~~A~~~~~~m~~----~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 488 (532)
-.+..-|.+.|++++|.++|+.+.. .|. .+...+...+..++.+.|+.++...+.=+|
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3556677788888888888877742 222 223345556667777777777766654444
No 434
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=36.88 E-value=4.2e+02 Score=26.01 Aligned_cols=237 Identities=11% Similarity=-0.002 Sum_probs=116.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhc
Q 009556 81 NKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKK 160 (532)
Q Consensus 81 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 160 (532)
..-|+++...| +.+++.+-...... ++...+.....++....+......+.+.+. .++..+-....+++.+.
T Consensus 42 ~AhLdgL~~~G--~~a~~~L~~aL~~d--~~~ev~~~aa~al~~~~~~~~~~~L~~~L~----d~~~~vr~aaa~ALg~i 113 (410)
T TIGR02270 42 LAHVDGLVLAG--KAATELLVSALAEA--DEPGRVACAALALLAQEDALDLRSVLAVLQ----AGPEGLCAGIQAALGWL 113 (410)
T ss_pred HHHHHHHHHhh--HhHHHHHHHHHhhC--CChhHHHHHHHHHhccCChHHHHHHHHHhc----CCCHHHHHHHHHHHhcC
Confidence 34477777777 56777666666432 333333333334433322222233333332 35555677777777777
Q ss_pred CChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHH
Q 009556 161 GLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIV 240 (532)
Q Consensus 161 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 240 (532)
++.+....+...+.. ++.......+.++...+. .+...+....+ .+|..+-...+.++...+..+ +...+
T Consensus 114 ~~~~a~~~L~~~L~~----~~p~vR~aal~al~~r~~--~~~~~L~~~L~---d~d~~Vra~A~raLG~l~~~~-a~~~L 183 (410)
T TIGR02270 114 GGRQAEPWLEPLLAA----SEPPGRAIGLAALGAHRH--DPGPALEAALT---HEDALVRAAALRALGELPRRL-SESTL 183 (410)
T ss_pred CchHHHHHHHHHhcC----CChHHHHHHHHHHHhhcc--ChHHHHHHHhc---CCCHHHHHHHHHHHHhhcccc-chHHH
Confidence 765555444444422 344444455555554332 12333333333 345566666666666666543 22233
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 009556 241 EEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYP 320 (532)
Q Consensus 241 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 320 (532)
..+.. ..|..+-..-+.+....|. ++|...+...... ++......+....... ..+++.+.+..+.+.
T Consensus 184 ~~al~---d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~---~g~~~~~~l~~~lal~-~~~~a~~~L~~ll~d---- 251 (410)
T TIGR02270 184 RLYLR---DSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVL---EGGPHRQRLLVLLAVA-GGPDAQAWLRELLQA---- 251 (410)
T ss_pred HHHHc---CCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhc---cCccHHHHHHHHHHhC-CchhHHHHHHHHhcC----
Confidence 33332 3456666666666677776 5555555542221 2222222333333222 333666666555543
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 009556 321 DPKIFITIISCLGELGKWDVIKKNFENM 348 (532)
Q Consensus 321 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 348 (532)
..+-...+.++.+.|+...+..+...+
T Consensus 252 -~~vr~~a~~AlG~lg~p~av~~L~~~l 278 (410)
T TIGR02270 252 -AATRREALRAVGLVGDVEAAPWCLEAM 278 (410)
T ss_pred -hhhHHHHHHHHHHcCCcchHHHHHHHh
Confidence 124555666666666666555544444
No 435
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=36.26 E-value=4.4e+02 Score=26.12 Aligned_cols=127 Identities=14% Similarity=0.032 Sum_probs=82.0
Q ss_pred HHHHHHHcCChHHHHH-HHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcC
Q 009556 83 SIQYCCKLGDIDEAMA-LLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKG 161 (532)
Q Consensus 83 li~~~~~~g~~~~A~~-~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 161 (532)
-|.--...|++..|-+ +++-+......|+.... ........|+++.+.+.+....+. +.....+...+++..-+.|
T Consensus 295 si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l--~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~ 371 (831)
T PRK15180 295 SITKQLADGDIIAASQQLFAALRNQQQDPVLIQL--RSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLA 371 (831)
T ss_pred HHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHH--HHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchh
Confidence 3444456788877765 44444444233443333 334455678999998887766532 2345567788888888999
Q ss_pred ChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 009556 162 LLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGF 213 (532)
Q Consensus 162 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 213 (532)
++++|..+-+.|....+ -+...........-..|-++++...|+++...+.
T Consensus 372 r~~~a~s~a~~~l~~ei-e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 372 RWREALSTAEMMLSNEI-EDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred hHHHHHHHHHHHhcccc-CChhheeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 99999998888887665 3333433333344456778888888888866543
No 436
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=36.07 E-value=5.7e+02 Score=27.38 Aligned_cols=96 Identities=9% Similarity=0.043 Sum_probs=47.9
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH---hcCCHHHHHHHHHHHHHCCCCCChHhHHHH
Q 009556 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALA---SVGRTLEADAIFQEMVCFGFNPKLRFYNIL 153 (532)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~---~~~~~~~A~~~~~~~~~~g~~~~~~~~~~l 153 (532)
...++.||..+.+.|++++....-..|.+.- +.++..|..-+.... ..+...++..+|++....-. ++..|.-.
T Consensus 113 ~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~-pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~--~v~iw~e~ 189 (881)
T KOG0128|consen 113 YAQMVQLIGLLRKLGDLEKLRQARLEMSEIA-PLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYN--SVPIWEEV 189 (881)
T ss_pred hHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccc--cchHHHHH
Confidence 3445566666667777766666555555542 444555554443332 23555556666666554322 22222222
Q ss_pred HHHH-------HhcCChhHHHHHHHHHHH
Q 009556 154 LRGF-------LKKGLLGLGSRLLMVMED 175 (532)
Q Consensus 154 i~~~-------~~~g~~~~A~~~~~~m~~ 175 (532)
+... .+.++++....+|.+...
T Consensus 190 ~~y~~~~~~~~~~~~d~k~~R~vf~ral~ 218 (881)
T KOG0128|consen 190 VNYLVGFGNVAKKSEDYKKERSVFERALR 218 (881)
T ss_pred HHHHHhccccccccccchhhhHHHHHHHh
Confidence 2222 223455555666665543
No 437
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=36.03 E-value=2e+02 Score=23.97 Aligned_cols=45 Identities=9% Similarity=0.061 Sum_probs=21.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCC
Q 009556 187 ILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNG 231 (532)
Q Consensus 187 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 231 (532)
.++..+...++.-.|.++++.+.+.+..++..|....|..+...|
T Consensus 30 ~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 30 EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 333333334444455555555555554444444444444444444
No 438
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=35.17 E-value=26 Score=32.49 Aligned_cols=49 Identities=10% Similarity=0.111 Sum_probs=20.6
Q ss_pred cCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 009556 370 YGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLME 419 (532)
Q Consensus 370 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 419 (532)
.|.++.|++.|...+..+ ++....|..-.+++.+.+....|++=+....
T Consensus 127 ~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ 175 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAI 175 (377)
T ss_pred CcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhh
Confidence 344455555544444432 2233333333344444444444444444333
No 439
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=34.94 E-value=2.3e+02 Score=31.25 Aligned_cols=76 Identities=14% Similarity=0.247 Sum_probs=53.6
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhh
Q 009556 438 GVAGKYKEALSVYHLMKDIGISPDLV-TYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSALVVLEQR 513 (532)
Q Consensus 438 ~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~a~~~~~~~ 513 (532)
-....+.++..+|..|.+.|+.+... .|......+.+.+.+.+|.++|+.-++....|-......+.....+.+++
T Consensus 89 ~~~e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP~~rL~~~~~~F~~r~~r~ 165 (974)
T KOG1166|consen 89 ELREELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEPLERLLRQYSNFQQRLMRQ 165 (974)
T ss_pred HHHHHHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhh
Confidence 35566778888888888777766544 45566667777777888888888887777777776666666666655555
No 440
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=34.86 E-value=3.9e+02 Score=25.09 Aligned_cols=80 Identities=8% Similarity=-0.046 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhc---CChhHHHHH
Q 009556 93 IDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKK---GLLGLGSRL 169 (532)
Q Consensus 93 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~~ 169 (532)
.+.-+.+++++.+.+ +.+...+..++..+.+..+.++..+-++++.... +-+...|...+...... -.++....+
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 456677899988874 5677788889999999999999999999998764 34677777777665442 234455555
Q ss_pred HHHHH
Q 009556 170 LMVME 174 (532)
Q Consensus 170 ~~~m~ 174 (532)
|.+..
T Consensus 125 y~~~l 129 (321)
T PF08424_consen 125 YEKCL 129 (321)
T ss_pred HHHHH
Confidence 54443
No 441
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=34.83 E-value=4.8e+02 Score=26.12 Aligned_cols=81 Identities=17% Similarity=0.110 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChHhHHHHHHHHHhcCChhHHHHHHHHH
Q 009556 95 EAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCF-GFNPKLRFYNILLRGFLKKGLLGLGSRLLMVM 173 (532)
Q Consensus 95 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 173 (532)
....+|+....+ +..|+..|...+.-+-+.+.+.+...+|..|... +..||..++.+. .-|-....++.|..+|..-
T Consensus 89 rIv~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~-wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 89 RIVFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAK-WEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhh-hHHhhccchHHHHHHHHHH
Confidence 345566665554 3558999999999988888899999999999865 334454444332 2333444588899888877
Q ss_pred HHcC
Q 009556 174 EDMG 177 (532)
Q Consensus 174 ~~~~ 177 (532)
.+..
T Consensus 167 LR~n 170 (568)
T KOG2396|consen 167 LRFN 170 (568)
T ss_pred hhcC
Confidence 7654
No 442
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.74 E-value=4.4e+02 Score=27.32 Aligned_cols=95 Identities=11% Similarity=0.022 Sum_probs=56.5
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----H--hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHH
Q 009556 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPS----S--ISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYN 151 (532)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~--~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~ 151 (532)
..||+.-+ ..+..++..+++.|..-... ++.| . .....+--+|....+++.|.+.+++..+.. +.++.+--
T Consensus 356 iLWn~A~~-~F~~~~Y~~s~~~y~~Sl~~-i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-~~~~l~q~ 432 (872)
T KOG4814|consen 356 LLWNTAKK-LFKMEKYVVSIRFYKLSLKD-IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-RQSPLCQL 432 (872)
T ss_pred HHHHhhHH-HHHHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-cccHHHHH
Confidence 34554433 34667777777777653322 1222 1 124445556667778888888888887654 23444545
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH
Q 009556 152 ILLRGFLKKGLLGLGSRLLMVMED 175 (532)
Q Consensus 152 ~li~~~~~~g~~~~A~~~~~~m~~ 175 (532)
.+..+....|.-++|+........
T Consensus 433 ~~~~~~~~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 433 LMLQSFLAEDKSEEALTCLQKIKS 456 (872)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHh
Confidence 556666677777777777666554
No 443
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=34.49 E-value=76 Score=16.80 Aligned_cols=27 Identities=15% Similarity=0.048 Sum_probs=12.8
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 009556 92 DIDEAMALLAQMQALGFHPSSISYASLI 119 (532)
Q Consensus 92 ~~~~A~~~~~~m~~~~~~~~~~~~~~li 119 (532)
+.+.|..+|+++.... +.+...|...+
T Consensus 2 ~~~~~r~i~e~~l~~~-~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKF-PKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHC-CCChHHHHHHH
Confidence 4555556666555442 23344444333
No 444
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=34.43 E-value=1.2e+02 Score=23.45 Aligned_cols=46 Identities=11% Similarity=0.095 Sum_probs=29.3
Q ss_pred HHHHHHHhcCCcChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhh
Q 009556 467 TLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSALVVLEQ 512 (532)
Q Consensus 467 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~a~~~~~~ 512 (532)
.++..+...+..-.|.++++.|.+.|...+..|..--++.+...|-
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 4555555666667777777777777777777766666666666553
No 445
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=34.13 E-value=3.8e+02 Score=24.74 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=14.7
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHH
Q 009556 319 YPDPKIFITIISCLGELGKWDVIK 342 (532)
Q Consensus 319 ~~~~~~~~~ll~~~~~~~~~~~a~ 342 (532)
..|+..|..+..+|.-.|+...+.
T Consensus 194 ~Fd~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 194 DFDPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred hCCHHHHHHHHHHHHHHhhhHHHH
Confidence 346666777777776666554443
No 446
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.07 E-value=3.4e+02 Score=24.13 Aligned_cols=23 Identities=13% Similarity=0.339 Sum_probs=15.6
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCC
Q 009556 297 HCKAGDVAKALELFTQMQEQGFY 319 (532)
Q Consensus 297 ~~~~g~~~~A~~~~~~m~~~~~~ 319 (532)
-+..+++.+|+++|++.....+.
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 34567788888888887665443
No 447
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.05 E-value=7.3e+02 Score=27.98 Aligned_cols=121 Identities=11% Similarity=0.074 Sum_probs=59.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHc-CC--CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHH----hHH
Q 009556 149 FYNILLRGFLKKGLLGLGSRLLMVMEDM-GI--CRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSF----VYG 221 (532)
Q Consensus 149 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~ 221 (532)
-|..+++.+-+.+-.+.+.++-....+. +. +.-..+++.+.+.....|.+-+|.+.+-+ .||.. ...
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~------npdserrrdcLR 1058 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR------NPDSERRRDCLR 1058 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc------CCcHHHHHHHHH
Confidence 3556666666677777666665544432 11 11123566666666666766666554433 22322 333
Q ss_pred HHHHHHHcCCChH------------HHHH-HHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 009556 222 KVIGLYRDNGMWK------------KAVG-IVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVF 275 (532)
Q Consensus 222 ~ll~~~~~~~~~~------------~a~~-~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 275 (532)
.++-.++..|.++ +..+ +++..-+.........|+.|-..+...+++.+|-.+.
T Consensus 1059 qlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1059 QLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred HHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHH
Confidence 4444455555443 2223 2222222222223344555555556666666655443
No 448
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=33.86 E-value=75 Score=21.45 Aligned_cols=49 Identities=12% Similarity=0.026 Sum_probs=31.4
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHh
Q 009556 110 PSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLK 159 (532)
Q Consensus 110 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 159 (532)
|....++.++...++-.-.++++..+.+..+.|. -+..+|.--++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 4555667777777777777777777777777763 455566555555554
No 449
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=33.80 E-value=4e+02 Score=24.94 Aligned_cols=150 Identities=11% Similarity=0.077 Sum_probs=78.2
Q ss_pred CCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhc----cCCCCCC
Q 009556 352 GHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLE-GLQPSGSMFCILANAYAQQGLCEQTVKVLQLME----PEGIEPN 426 (532)
Q Consensus 352 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~p~ 426 (532)
.+..|...++.|..+ +....++-.+..+...+. |-.--...+.....-|++.|+-+.|.+.++.-. ..|.+.|
T Consensus 65 ~i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiD 142 (393)
T KOG0687|consen 65 VIKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKID 142 (393)
T ss_pred ceeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchh
Confidence 344555555555443 222233333333333332 111122345566677888888888888776543 3466667
Q ss_pred HHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCHHHHH
Q 009556 427 LVMLNVL-INAFGVAGKYKEALSVYHLMKDIGISPDLV----TYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQ 501 (532)
Q Consensus 427 ~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 501 (532)
+..+..- .-.|..+.-+.+-++..+.+.+.|-..+.. +|..+- |....++.+|-.+|-+....=-.-..-+|.
T Consensus 143 Vvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~vsTFtS~El~~Y~ 220 (393)
T KOG0687|consen 143 VVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSVSTFTSYELMSYE 220 (393)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHcccccceecccHH
Confidence 6655432 233444445566666666677777654432 454443 334567778877776665432222333444
Q ss_pred HHHH
Q 009556 502 ILQS 505 (532)
Q Consensus 502 ~l~~ 505 (532)
.++.
T Consensus 221 ~~v~ 224 (393)
T KOG0687|consen 221 TFVR 224 (393)
T ss_pred HHHH
Confidence 4443
No 450
>PF13934 ELYS: Nuclear pore complex assembly
Probab=32.90 E-value=3.5e+02 Score=23.89 Aligned_cols=91 Identities=14% Similarity=0.117 Sum_probs=45.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009556 397 ILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAK 476 (532)
Q Consensus 397 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 476 (532)
.++.++...|+.+.|..+++.+.... .+......++.. ..++.+.+|+.+-+...+. -....+..++..+....
T Consensus 113 ~Il~~L~~~~~~~lAL~y~~~~~p~l--~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~---~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 113 KILQALLRRGDPKLALRYLRAVGPPL--SSPEALTLYFVA-LANGLVTEAFSFQRSYPDE---LRRRLFEQLLEHCLEEC 186 (226)
T ss_pred HHHHHHHHCCChhHHHHHHHhcCCCC--CCHHHHHHHHHH-HHcCCHHHHHHHHHhCchh---hhHHHHHHHHHHHHHHh
Confidence 35666666677777777776654321 122222333333 5557777777665544331 11335666666665443
Q ss_pred CcChHHHHHHHHHhCCCCCC
Q 009556 477 KFHKVPEIYKQMESSGCTPD 496 (532)
Q Consensus 477 ~~~~a~~~~~~m~~~g~~p~ 496 (532)
. + ...++++.+.-+.++
T Consensus 187 ~--~-~~~~~~Ll~LPl~~~ 203 (226)
T PF13934_consen 187 A--R-SGRLDELLSLPLDEE 203 (226)
T ss_pred h--h-hhHHHHHHhCCCChH
Confidence 2 1 222455555333333
No 451
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=32.66 E-value=2.4e+02 Score=25.29 Aligned_cols=56 Identities=18% Similarity=0.176 Sum_probs=25.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc----C-CCcCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 009556 153 LLRGFLKKGLLGLGSRLLMVMEDM----G-ICRNQETYEILLDYHVNAGRLDDTWLIINEM 208 (532)
Q Consensus 153 li~~~~~~g~~~~A~~~~~~m~~~----~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 208 (532)
+..-|.+.|+++.|.++|+.+... | ..+...+...+..++.+.|+.+....+--+|
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 334444445555555555444211 1 1123334444555555566655555544333
No 452
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=32.40 E-value=4.9e+02 Score=27.62 Aligned_cols=82 Identities=13% Similarity=0.117 Sum_probs=45.3
Q ss_pred cHHHHHHHH-HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCC---CC----------CCHHHHHHHHHHHHhc
Q 009556 375 DPEECIAAL-KLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEG---IE----------PNLVMLNVLINAFGVA 440 (532)
Q Consensus 375 ~a~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~----------p~~~~~~~li~~~~~~ 440 (532)
+....+..+ .+.|+..+......++... .|+...+..+++++...| +. .+......++.++..
T Consensus 182 eI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~~- 258 (709)
T PRK08691 182 QVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGIIN- 258 (709)
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHHc-
Confidence 344444443 4456666766666666543 588888888887765432 11 111222333333333
Q ss_pred CCHHHHHHHHHHHHHCCCC
Q 009556 441 GKYKEALSVYHLMKDIGIS 459 (532)
Q Consensus 441 g~~~~A~~~~~~m~~~~~~ 459 (532)
++...++.+++++.+.|+.
T Consensus 259 ~d~~~al~~l~~L~~~G~d 277 (709)
T PRK08691 259 QDGAALLAKAQEMAACAVG 277 (709)
T ss_pred CCHHHHHHHHHHHHHhCCC
Confidence 6666666666666666554
No 453
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=32.22 E-value=3.4e+02 Score=23.66 Aligned_cols=67 Identities=13% Similarity=0.088 Sum_probs=36.7
Q ss_pred HHHHHHHHHhcCC-------HHHHHHHHHHHHHCCCCC----CH-HHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCC
Q 009556 430 LNVLINAFGVAGK-------YKEALSVYHLMKDIGISP----DL-VTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPD 496 (532)
Q Consensus 430 ~~~li~~~~~~g~-------~~~A~~~~~~m~~~~~~p----~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~ 496 (532)
+--+...|...|+ ...|.+.|.+..+..-.| +. ...-.+.....+.|++++|.+.|.++...+-.+.
T Consensus 121 ~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 121 CLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 3344455555555 334555555554332111 22 2333445566778888888888888886654444
No 454
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=32.21 E-value=1e+02 Score=21.48 Aligned_cols=35 Identities=37% Similarity=0.481 Sum_probs=19.4
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 009556 89 KLGDIDEAMALLAQMQALGFHPSSISYASLIEALA 123 (532)
Q Consensus 89 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 123 (532)
-.++.+.+.+++++..+.|..+.......+..++.
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~ 47 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPAME 47 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 34666677777777666665555544444444443
No 455
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=31.99 E-value=1.2e+02 Score=22.95 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=15.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhc
Q 009556 396 CILANAYAQQGLCEQTVKVLQLME 419 (532)
Q Consensus 396 ~~li~~~~~~g~~~~A~~~~~~m~ 419 (532)
..++..|...|+.++|..-++++.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~ 29 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELK 29 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhC
Confidence 445666777777877777777754
No 456
>PRK09857 putative transposase; Provisional
Probab=31.94 E-value=4.1e+02 Score=24.55 Aligned_cols=66 Identities=14% Similarity=0.091 Sum_probs=38.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcC
Q 009556 150 YNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLN 216 (532)
Q Consensus 150 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 216 (532)
+..++....+.|+.++-.++++.+.+. .+......-++..-+.+.|.-+++.++..+|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 344555545556666666666666554 222333344555555666666677788888888877654
No 457
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=31.77 E-value=3.3e+02 Score=23.29 Aligned_cols=55 Identities=13% Similarity=0.204 Sum_probs=26.1
Q ss_pred HHhccCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHH-HHHHcC--CHHHHHHHHHHHHH
Q 009556 261 TFGKYGELVEALEVFEKMQQE--SIRPDIVTWNSLIR-WHCKAG--DVAKALELFTQMQE 315 (532)
Q Consensus 261 ~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~-~~~~~g--~~~~A~~~~~~m~~ 315 (532)
.....|++++|..-++++.+. .++.-...|..+.. +++..+ .+-+|.-++.-+..
T Consensus 38 ~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~ 97 (204)
T COG2178 38 FLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKD 97 (204)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhc
Confidence 344566677776666665432 00111223333333 455544 34556655555544
No 458
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.34 E-value=5.7e+02 Score=25.97 Aligned_cols=76 Identities=18% Similarity=0.234 Sum_probs=44.9
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCC---C----------CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009556 383 LKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEG---I----------EPNLVMLNVLINAFGVAGKYKEALSV 449 (532)
Q Consensus 383 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~----------~p~~~~~~~li~~~~~~g~~~~A~~~ 449 (532)
+.+.|+..+......++.. ..|+...|..+++++...| + .++......++.++. .|+.+.+..+
T Consensus 191 l~~egi~~~~~al~~ia~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~-~~d~~~~l~~ 267 (509)
T PRK14958 191 LKEENVEFENAALDLLARA--ANGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALA-AKAGDRLLGC 267 (509)
T ss_pred HHHcCCCCCHHHHHHHHHH--cCCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHH-cCCHHHHHHH
Confidence 3456666666666555544 3688999998887765432 1 111222233344333 3677777777
Q ss_pred HHHHHHCCCCCC
Q 009556 450 YHLMKDIGISPD 461 (532)
Q Consensus 450 ~~~m~~~~~~p~ 461 (532)
++++.+.|..|.
T Consensus 268 ~~~l~~~g~~~~ 279 (509)
T PRK14958 268 VTRLVEQGVDFS 279 (509)
T ss_pred HHHHHHcCCCHH
Confidence 777777776654
No 459
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=31.29 E-value=2.3e+02 Score=21.43 Aligned_cols=26 Identities=19% Similarity=0.454 Sum_probs=13.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhcc
Q 009556 395 FCILANAYAQQGLCEQTVKVLQLMEP 420 (532)
Q Consensus 395 ~~~li~~~~~~g~~~~A~~~~~~m~~ 420 (532)
|..++.-|...|..++|++++.+..+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 44455555555555555555554443
No 460
>PF15469 Sec5: Exocyst complex component Sec5
Probab=31.25 E-value=3.2e+02 Score=22.98 Aligned_cols=23 Identities=13% Similarity=0.010 Sum_probs=11.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 009556 117 SLIEALASVGRTLEADAIFQEMV 139 (532)
Q Consensus 117 ~li~~~~~~~~~~~A~~~~~~~~ 139 (532)
.-+.-+.+.|+++.+..-|.+..
T Consensus 91 ~~L~~~i~~~dy~~~i~dY~kak 113 (182)
T PF15469_consen 91 SNLRECIKKGDYDQAINDYKKAK 113 (182)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHH
Confidence 33444445555555555554443
No 461
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=30.95 E-value=2.8e+02 Score=22.19 Aligned_cols=65 Identities=11% Similarity=-0.019 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCcChHHHHHHHHHh
Q 009556 426 NLVMLNVLINAFGVAGK---YKEALSVYHLMKDIGIS-PDLVTYSTLMKAFIRAKKFHKVPEIYKQMES 490 (532)
Q Consensus 426 ~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (532)
...+--.+..++.+..+ .++.+.++++..+...+ -+.....-|.-++.+.+++++++++.+.+.+
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 33343444444444433 33344455555431111 1122223344455556666666666655554
No 462
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=30.78 E-value=4.4e+02 Score=24.44 Aligned_cols=20 Identities=10% Similarity=0.268 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHccCCHHHHH
Q 009556 323 KIFITIISCLGELGKWDVIK 342 (532)
Q Consensus 323 ~~~~~ll~~~~~~~~~~~a~ 342 (532)
.+|..++.+++..|+.+..+
T Consensus 322 K~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HhhhHHHHHHhcCChHHHHH
Confidence 45778888888888766543
No 463
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=30.67 E-value=1.3e+02 Score=22.94 Aligned_cols=36 Identities=11% Similarity=0.111 Sum_probs=15.2
Q ss_pred CCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC
Q 009556 406 GLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAG 441 (532)
Q Consensus 406 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 441 (532)
+..-.|.++++.+.+.+...+..|.--.++.+...|
T Consensus 14 ~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 14 DGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred CCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 333444444444444443334444333344444443
No 464
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=29.87 E-value=52 Score=22.02 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=17.6
Q ss_pred cCChHHHHHHHHHHHHcC-CCCCH
Q 009556 90 LGDIDEAMALLAQMQALG-FHPSS 112 (532)
Q Consensus 90 ~g~~~~A~~~~~~m~~~~-~~~~~ 112 (532)
.=|++.|+..|.++...| ++++.
T Consensus 38 ~Wd~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 38 NWDYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred CCCHHHHHHHHHHHHhcCCCChhh
Confidence 348899999999998865 55544
No 465
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=29.64 E-value=2.2e+02 Score=20.56 Aligned_cols=43 Identities=12% Similarity=0.072 Sum_probs=32.8
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009556 98 ALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVC 140 (532)
Q Consensus 98 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 140 (532)
++|+-....|+..|+..|..++..+.-+=..+...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 7788888888888888888888777766667777777777753
No 466
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.49 E-value=7.6e+02 Score=26.78 Aligned_cols=48 Identities=13% Similarity=0.086 Sum_probs=30.1
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCcCH--HHHHHHHHHHHhcCChHHHHHHHHHH
Q 009556 155 RGFLKKGLLGLGSRLLMVMEDMGICRNQ--ETYEILLDYHVNAGRLDDTWLIINEM 208 (532)
Q Consensus 155 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m 208 (532)
+.|...|+++.|.++-..- |+. .++..-.+.|.+.+++..|-++|.++
T Consensus 366 k~yLd~g~y~kAL~~ar~~------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t 415 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTR------PDALETVLLKQADFLFQDKEYLRAAEIYAET 415 (911)
T ss_pred HHHHhcchHHHHHHhccCC------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 4566777777777654322 222 24444556677777888888887776
No 467
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=29.40 E-value=7.5e+02 Score=26.68 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=17.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Q 009556 82 KSIQYCCKLGDIDEAMALLAQMQA 105 (532)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~ 105 (532)
.++-.+.|+|+.+.|.+..++...
T Consensus 330 ~~vyy~lR~G~lk~A~~~l~e~~~ 353 (835)
T KOG2168|consen 330 PLVYYLLRCGDLKAASQFLNENKD 353 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhh
Confidence 566667777777777777777664
No 468
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=29.31 E-value=4.7e+02 Score=24.30 Aligned_cols=81 Identities=10% Similarity=-0.038 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 009556 233 WKKAVGIVEEIREMGL----SLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALE 308 (532)
Q Consensus 233 ~~~a~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 308 (532)
.+.|.+.|+.....+. ..+......++....+.|+.+.-..+++..... ++......++.+.+...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 3455566666655311 234444555555566666655544444444432 245555666666666666666666
Q ss_pred HHHHHHHC
Q 009556 309 LFTQMQEQ 316 (532)
Q Consensus 309 ~~~~m~~~ 316 (532)
+++.....
T Consensus 223 ~l~~~l~~ 230 (324)
T PF11838_consen 223 LLDLLLSN 230 (324)
T ss_dssp HHHHHHCT
T ss_pred HHHHHcCC
Confidence 66666653
No 469
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.11 E-value=6.4e+02 Score=25.81 Aligned_cols=56 Identities=14% Similarity=0.033 Sum_probs=34.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 009556 84 IQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALA-SVGRTLEADAIFQEMV 139 (532)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~-~~~~~~~A~~~~~~~~ 139 (532)
++.+.+.|.+..|++...-+.+....-|+.....+|..|+ +..+++--+++++...
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e 405 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPE 405 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3445566777777777777666654445666666666665 5566666666666553
No 470
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=29.00 E-value=1.8e+02 Score=19.37 Aligned_cols=47 Identities=21% Similarity=0.195 Sum_probs=23.7
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH-----hcCCHHHHHHH
Q 009556 88 CKLGDIDEAMALLAQMQALGFHPSSISYASLIEALA-----SVGRTLEADAI 134 (532)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~-----~~~~~~~A~~~ 134 (532)
...|++=+|-++++.+-...-.+....+..+|+... +.|+...|..+
T Consensus 10 ~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 456777777777776654322233444555554332 44555555544
No 471
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=28.46 E-value=2.7e+02 Score=21.19 Aligned_cols=13 Identities=23% Similarity=0.097 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 009556 128 TLEADAIFQEMVC 140 (532)
Q Consensus 128 ~~~A~~~~~~~~~ 140 (532)
.++|..+.+.+..
T Consensus 22 H~EA~tIa~wL~~ 34 (116)
T PF09477_consen 22 HQEANTIADWLEQ 34 (116)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 3444444444443
No 472
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=28.42 E-value=8.6e+02 Score=27.08 Aligned_cols=28 Identities=14% Similarity=0.310 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhcC--CHHHHHHHHHHhccC
Q 009556 394 MFCILANAYAQQG--LCEQTVKVLQLMEPE 421 (532)
Q Consensus 394 ~~~~li~~~~~~g--~~~~A~~~~~~m~~~ 421 (532)
.+..++.+|.+.+ ++++|+.+..++.+.
T Consensus 814 ~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 814 YLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 3456666676666 667777777766644
No 473
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=28.23 E-value=5.6e+02 Score=24.88 Aligned_cols=30 Identities=20% Similarity=0.345 Sum_probs=17.9
Q ss_pred CCHHHHHHHHHHhccC-----CCCCCHHHHHHHHH
Q 009556 406 GLCEQTVKVLQLMEPE-----GIEPNLVMLNVLIN 435 (532)
Q Consensus 406 g~~~~A~~~~~~m~~~-----~~~p~~~~~~~li~ 435 (532)
+++...+++++++... -+.|.+.+.-.+|+
T Consensus 318 sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 318 SKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred hhHHHHHHHHHHhccceeechhcchhHHHHHHHHH
Confidence 4677777777777543 23555555544443
No 474
>PRK09462 fur ferric uptake regulator; Provisional
Probab=27.89 E-value=3.2e+02 Score=21.99 Aligned_cols=45 Identities=11% Similarity=0.132 Sum_probs=22.2
Q ss_pred HHHHHHHhc-CChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCC
Q 009556 187 ILLDYHVNA-GRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNG 231 (532)
Q Consensus 187 ~li~~~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 231 (532)
.++..+... +..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 21 ~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 21 KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 334444332 344555666666655555545555444444444444
No 475
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=27.62 E-value=8.9e+02 Score=26.98 Aligned_cols=28 Identities=18% Similarity=0.049 Sum_probs=19.0
Q ss_pred CCChhhHHHHHHHHHHcCChHHHHHHHHH
Q 009556 74 EFSGNSYNKSIQYCCKLGDIDEAMALLAQ 102 (532)
Q Consensus 74 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 102 (532)
.|-.-.. ..|+.+...++|.+|..+.++
T Consensus 692 ~PR~LVL-~~ir~~Ld~~~Y~~Af~~~Rk 719 (928)
T PF04762_consen 692 YPRALVL-AGIRKLLDAKDYKEAFELCRK 719 (928)
T ss_pred ccHhHHH-HHHHHHHhhccHHHHHHHHHH
Confidence 4444333 456677888999999776665
No 476
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=27.09 E-value=5.7e+02 Score=24.55 Aligned_cols=117 Identities=11% Similarity=0.116 Sum_probs=64.0
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH-------CCC-----------------
Q 009556 88 CKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVC-------FGF----------------- 143 (532)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-------~g~----------------- 143 (532)
...+|.+.-..++++ . +--+.++..+-..+...|+.+.|.++.++.+- ..+
T Consensus 21 v~~~Dp~~l~~ll~~---~--PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~ 95 (360)
T PF04910_consen 21 VQSHDPNALINLLQK---N--PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYR 95 (360)
T ss_pred HHccCHHHHHHHHHH---C--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCc
Confidence 344555555544422 1 44566777788888888888888877776641 111
Q ss_pred -CCChHhHHHH---HHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHH-hcCChHHHHHHHHHHH
Q 009556 144 -NPKLRFYNIL---LRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHV-NAGRLDDTWLIINEMR 209 (532)
Q Consensus 144 -~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~m~ 209 (532)
..|...|.++ +..+.+.|-+..|.++.+-+...++.-|+..-..+|+.|+ +.++++--+++.+...
T Consensus 96 ~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 96 RPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred cccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 1122223322 3444556666666666666666555445555555555443 4455555555555443
No 477
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=27.00 E-value=2.7e+02 Score=21.25 Aligned_cols=26 Identities=19% Similarity=0.162 Sum_probs=16.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009556 117 SLIEALASVGRTLEADAIFQEMVCFG 142 (532)
Q Consensus 117 ~li~~~~~~~~~~~A~~~~~~~~~~g 142 (532)
+++..+.+....++|+++.+.|.+.|
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 34555556666666777766666666
No 478
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=26.97 E-value=6.6e+02 Score=27.11 Aligned_cols=92 Identities=16% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHHhccC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------------CCCCHHHHHHHHHHHHh
Q 009556 409 EQTVKVLQLMEPE-GIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIG-------------ISPDLVTYSTLMKAFIR 474 (532)
Q Consensus 409 ~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------------~~p~~~~~~~l~~~~~~ 474 (532)
++..+.++...+. |+..+......+.+.. .|++.+|+.++++....+ -..|...+..++.++..
T Consensus 181 eeIv~~L~~Il~~EgI~id~eAL~lIA~~A--~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL~~ 258 (830)
T PRK07003 181 GHIVSHLERILGEERIAFEPQALRLLARAA--QGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDALAA 258 (830)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHHHc
Q ss_pred cCCcChHHHHHHHHHhCCCCCCHHHHHHH
Q 009556 475 AKKFHKVPEIYKQMESSGCTPDRKARQIL 503 (532)
Q Consensus 475 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 503 (532)
|+..+++.+++++...|+.+....-..+
T Consensus 259 -~d~~~~l~~~~~l~~~g~~~~~~l~dLl 286 (830)
T PRK07003 259 -GDGPEILAVADEMALRSLSFSTALQDLA 286 (830)
T ss_pred -CCHHHHHHHHHHHHHhCCCHHHHHHHHH
No 479
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=26.92 E-value=1.3e+02 Score=23.23 Aligned_cols=47 Identities=13% Similarity=0.140 Sum_probs=29.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc
Q 009556 432 VLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKF 478 (532)
Q Consensus 432 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 478 (532)
.++..+...+..-.|.++++.+.+.+...+..|...-++.+...|-.
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 45556666666777777778777777666666665566666666543
No 480
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.89 E-value=1.8e+02 Score=31.05 Aligned_cols=96 Identities=11% Similarity=0.162 Sum_probs=58.1
Q ss_pred hcCCHHHHHHHHHHhccC------CCCCCHHHHHHHHHHHHh---------------cCCHHHHHHHHHHHHHCCCCCCH
Q 009556 404 QQGLCEQTVKVLQLMEPE------GIEPNLVMLNVLINAFGV---------------AGKYKEALSVYHLMKDIGISPDL 462 (532)
Q Consensus 404 ~~g~~~~A~~~~~~m~~~------~~~p~~~~~~~li~~~~~---------------~g~~~~A~~~~~~m~~~~~~p~~ 462 (532)
..|.+.+|.+.|+...-. .-+-+..-...++..+.. .+..+++.++-.-.....++|-.
T Consensus 1003 t~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaYFt~~~Lqp~H 1082 (1202)
T KOG0292|consen 1003 TEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAYFTHCKLQPMH 1082 (1202)
T ss_pred ccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHHhhcCCCCcHH
Confidence 457788888877765421 001222233344443321 23445554444444455566643
Q ss_pred H--HHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCHHH
Q 009556 463 V--TYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKA 499 (532)
Q Consensus 463 ~--~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 499 (532)
. +....+..+.+.+++..|..+-.++.+.+-.|+...
T Consensus 1083 ~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~ 1121 (1202)
T KOG0292|consen 1083 RILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAE 1121 (1202)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHH
Confidence 3 556778889999999999999999998777776643
No 481
>PF08314 Sec39: Secretory pathway protein Sec39; InterPro: IPR013244 Sec39 was originally identified as a protein involved in ER-Golgi transport in a large scale promoter shut down analysis of essential yeast genes []. A subsequent study found that Sec39p (Dsl3p) is required for Golgi-ER retrograde transport and is part of a very stable protein complex that also includes Dsl1p (in mammals ZW10), Tip20p (Rint-1) and the ER localized Q-SNARE proteins Ufe1p (syntaxin-18), Sec20p and Use1p []. This was confirmed in a genome-wide analysis of protein complexes []. ; PDB: 3K8P_D.
Probab=26.82 E-value=6.8e+02 Score=26.85 Aligned_cols=160 Identities=11% Similarity=0.063 Sum_probs=79.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-----------ccCCHHHHHHHHHHHHhc-CC
Q 009556 286 DIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLG-----------ELGKWDVIKKNFENMKDR-GH 353 (532)
Q Consensus 286 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~-----------~~~~~~~a~~~~~~~~~~-~~ 353 (532)
.......++.++...|+++-|.+++..-... .-+.......++.+.. ..|....|.++++.+... .-
T Consensus 431 ~~~~~~~~l~~LL~~~~f~la~~~~~~~~~~-~l~~~~~~~lvl~~~~e~fd~Asn~n~~~g~lk~A~~~L~l~~~~~~~ 509 (715)
T PF08314_consen 431 KDEIEEIFLEALLSSGRFSLAKSLYEESSSS-PLSSEKVEDLVLKAAWEFFDNASNGNRTRGGLKKARECLNLFPPTFPN 509 (715)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHTT----TT-HHHHHHHHHHHHHHHHH-SS--TTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHhcCCcC-CCCHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccCcCCc
Confidence 3455677888889999999888888764322 1334444444444432 234566777777766543 00
Q ss_pred CCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCC---------CCCHHHHHHHHHHHHhcC----CHHHHHHHHHHhcc
Q 009556 354 GKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGL---------QPSGSMFCILANAYAQQG----LCEQTVKVLQLMEP 420 (532)
Q Consensus 354 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---------~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~ 420 (532)
.+...-...|+++.....++.-. .+.|+ .+|. ...+-..+..+. ++++-.++...+..
T Consensus 510 ~~~~~~~~~Li~a~~~Ls~f~l~-------l~~g~p~~P~~ir~~~dp--l~LI~~vLe~np~aY~~~~~ll~l~~~L~~ 580 (715)
T PF08314_consen 510 SPRIQREKDLIKATHALSEFSLV-------LQPGVPFLPVQIRLHSDP--LSLISKVLEQNPKAYKQLEKLLDLANNLVL 580 (715)
T ss_dssp THHHHHHHHHHHHHHHHTTS------------------HHHHHTTT-T--HHHHHHHHHHSTTGGG-HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCee-------cCCCCCCCCceeeccCCh--HHHHHHHHHhCchhhcCHHHHHHHHHHHHH
Confidence 12334445666666555444331 11111 1121 122222222222 34555555555443
Q ss_pred CC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009556 421 EG---------IEPNLVMLNVLINAFGVAGKYKEALSVYHLMKD 455 (532)
Q Consensus 421 ~~---------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 455 (532)
.| ..-...+....|++....++++-|.+.-.++.+
T Consensus 581 ~~~~~~~~~~~~~~~~ri~~~~i~~AL~~~Df~~Ay~~~~~ll~ 624 (715)
T PF08314_consen 581 AGSDESSESDDEAAERRILSMCIEAALVEDDFETAYSYCLELLD 624 (715)
T ss_dssp H-----TT---SSTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HhcccccccchHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 31 111223445567777788999999988877664
No 482
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.65 E-value=7.3e+02 Score=25.99 Aligned_cols=81 Identities=16% Similarity=0.190 Sum_probs=43.1
Q ss_pred HHHHHHHH-HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCC-C------------CCHHHHHHHHHHHHhcC
Q 009556 376 PEECIAAL-KLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGI-E------------PNLVMLNVLINAFGVAG 441 (532)
Q Consensus 376 a~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~------------p~~~~~~~li~~~~~~g 441 (532)
..+.+... .+.|+..+......++. ...|+...+..++++....+- . ++......++.++. .|
T Consensus 188 i~~~L~~i~~~egi~ie~~AL~~La~--~s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~-~~ 264 (618)
T PRK14951 188 VLEHLTQVLAAENVPAEPQALRLLAR--AARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALA-QG 264 (618)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHH-cC
Confidence 33344333 44566666666665555 345788888888776543321 1 11222223333333 35
Q ss_pred CHHHHHHHHHHHHHCCCC
Q 009556 442 KYKEALSVYHLMKDIGIS 459 (532)
Q Consensus 442 ~~~~A~~~~~~m~~~~~~ 459 (532)
+...++++++++.+.|..
T Consensus 265 d~~~al~~l~~l~~~G~~ 282 (618)
T PRK14951 265 DGRTVVETADELRLNGLS 282 (618)
T ss_pred CHHHHHHHHHHHHHcCCC
Confidence 666666666666665554
No 483
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=26.51 E-value=1.8e+02 Score=18.62 Aligned_cols=24 Identities=17% Similarity=0.158 Sum_probs=14.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Q 009556 83 SIQYCCKLGDIDEAMALLAQMQAL 106 (532)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~ 106 (532)
+.-++.+.|++++|.+..+.+.+.
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh
Confidence 334556667777777777766665
No 484
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=26.43 E-value=2.9e+02 Score=20.98 Aligned_cols=81 Identities=20% Similarity=0.113 Sum_probs=48.3
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHH
Q 009556 90 LGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRL 169 (532)
Q Consensus 90 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 169 (532)
....++|..+.+.+...+. .....--.-+..+.+.|++++|+ ..-.. ...||...|-+|- -.+.|--+.+...
T Consensus 19 ~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~AL---l~~~~-~~~pdL~p~~AL~--a~klGL~~~~e~~ 91 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEAL---LLPQC-HCYPDLEPWAALC--AWKLGLASALESR 91 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHH---HHHTT-S--GGGHHHHHHH--HHHCT-HHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHH---Hhccc-CCCccHHHHHHHH--HHhhccHHHHHHH
Confidence 3457888888888887652 23333334456677899999992 22222 2357777776554 3477877888877
Q ss_pred HHHHHHcC
Q 009556 170 LMVMEDMG 177 (532)
Q Consensus 170 ~~~m~~~~ 177 (532)
+.++...|
T Consensus 92 l~rla~~g 99 (116)
T PF09477_consen 92 LTRLASSG 99 (116)
T ss_dssp HHHHCT-S
T ss_pred HHHHHhCC
Confidence 77776554
No 485
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=25.42 E-value=3e+02 Score=20.74 Aligned_cols=60 Identities=13% Similarity=0.046 Sum_probs=37.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcC--CHHHHHHHHHHHHHCC
Q 009556 81 NKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVG--RTLEADAIFQEMVCFG 142 (532)
Q Consensus 81 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~--~~~~A~~~~~~~~~~g 142 (532)
..++..|...+++++|.+.+.++.... ........++..+...+ .-+....++..+.+.+
T Consensus 6 ~~~l~ey~~~~D~~ea~~~l~~L~~~~--~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~ 67 (113)
T smart00544 6 FLIIEEYLSSGDTDEAVHCLLELKLPE--QHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQAN 67 (113)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhCCCc--chHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcC
Confidence 457888899999999999998876432 22233444555555443 2344555666666544
No 486
>PRK09857 putative transposase; Provisional
Probab=25.10 E-value=5.5e+02 Score=23.74 Aligned_cols=66 Identities=18% Similarity=0.177 Sum_probs=45.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC
Q 009556 185 YEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLD 251 (532)
Q Consensus 185 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 251 (532)
+..++....+.++.++..++++.+.+. .+.......++..-+.+.|.-+++.++...|...|+..+
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 456666666777777777777777655 232334445566667777777888899999999887655
No 487
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=24.29 E-value=7.7e+02 Score=25.10 Aligned_cols=123 Identities=16% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcC
Q 009556 83 SIQYCCKLGDIDEAMALLAQMQALGFHPSSI-SYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKG 161 (532)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 161 (532)
++..|.+.+++++|+.++..|.=.-....-. +.+.+.+.+.+..--++....++.+...=..|....-.....-|.. .
T Consensus 414 L~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~d-~ 492 (545)
T PF11768_consen 414 LISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYRD-P 492 (545)
T ss_pred HHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHHH-H
Q ss_pred ChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 009556 162 LLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKG 212 (532)
Q Consensus 162 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 212 (532)
=.+-|++.|..+...+- |.........-|+.|--.+++......|
T Consensus 493 V~~~aRRfFhhLLR~~r------fekAFlLAvdi~~~DLFmdlh~~A~~~g 537 (545)
T PF11768_consen 493 VSDLARRFFHHLLRYQR------FEKAFLLAVDIGDRDLFMDLHYLAKDKG 537 (545)
T ss_pred HHHHHHHHHHHHHHhhH------HHHHHHHHHhccchHHHHHHHHHHHhcc
No 488
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=23.95 E-value=1.1e+03 Score=26.89 Aligned_cols=24 Identities=13% Similarity=0.098 Sum_probs=14.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHH
Q 009556 181 NQETYEILLDYHVNAGRLDDTWLI 204 (532)
Q Consensus 181 ~~~~~~~li~~~~~~~~~~~a~~~ 204 (532)
....|..+...+-+.++.++|...
T Consensus 972 ~~~~~~~La~l~~~~~d~~~Ai~~ 995 (1236)
T KOG1839|consen 972 VASKYRSLAKLSNRLGDNQEAIAQ 995 (1236)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHh
Confidence 344566666666666666666654
No 489
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=23.66 E-value=6.3e+02 Score=24.75 Aligned_cols=89 Identities=9% Similarity=-0.023 Sum_probs=45.7
Q ss_pred HHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHH---H-----HHhcCChHHHHHHHHHHHH
Q 009556 139 VCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLD---Y-----HVNAGRLDDTWLIINEMRS 210 (532)
Q Consensus 139 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~---~-----~~~~~~~~~a~~~~~~m~~ 210 (532)
....+.||..+.|-+...++..-..+-...+++...+.+- |=.+-+..+|- + -.+...-++++++++.|..
T Consensus 175 dtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqaD-PF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~ 253 (669)
T KOG3636|consen 175 DTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQAD-PFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPA 253 (669)
T ss_pred hccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-ceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCch
Confidence 3344567777777766666666666666666666665432 22222222211 1 1233455677777777654
Q ss_pred CCCCcCHHhHHHHHHHHH
Q 009556 211 KGFQLNSFVYGKVIGLYR 228 (532)
Q Consensus 211 ~~~~~~~~~~~~ll~~~~ 228 (532)
.=-.-|..-+-+|...|+
T Consensus 254 ~L~~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 254 QLSVEDVPDFFSLAQYYS 271 (669)
T ss_pred hcccccchhHHHHHHHHh
Confidence 322224444445554444
No 490
>PHA03100 ankyrin repeat protein; Provisional
Probab=23.66 E-value=7.4e+02 Score=24.68 Aligned_cols=151 Identities=15% Similarity=0.118 Sum_probs=67.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHhH--HHHHHHH-----HHhcCCHHHHHHHHHHHHHCCCCCCh---HhHHH
Q 009556 83 SIQYCCKLGDIDEAMALLAQMQALGFHPSSIS--YASLIEA-----LASVGRTLEADAIFQEMVCFGFNPKL---RFYNI 152 (532)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~--~~~li~~-----~~~~~~~~~A~~~~~~~~~~g~~~~~---~~~~~ 152 (532)
.+...++.|+.+-+ +.+.+.|..++... ....+.. .+..|..+ +.+.+.+.|..++. ...+.
T Consensus 38 ~L~~A~~~~~~~iv----k~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~----iv~~Ll~~ga~i~~~d~~g~tp 109 (480)
T PHA03100 38 PLYLAKEARNIDVV----KILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKE----IVKLLLEYGANVNAPDNNGITP 109 (480)
T ss_pred hhhhhhccCCHHHH----HHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHH----HHHHHHHCCCCCCCCCCCCCch
Confidence 34444566765544 44445565554322 1122333 34444443 34444555544332 22333
Q ss_pred HHHHHH-hcCChhHHHHHHHHHHHcCCCcCHHH--HHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhH--HHHHHHH
Q 009556 153 LLRGFL-KKGLLGLGSRLLMVMEDMGICRNQET--YEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVY--GKVIGLY 227 (532)
Q Consensus 153 li~~~~-~~g~~~~A~~~~~~m~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~--~~ll~~~ 227 (532)
|..+.. ..|+.+-. +.+.+.|..++... -.+.+...+..|. .-.++.+.+.+.|..++.... .+.+...
T Consensus 110 L~~A~~~~~~~~~iv----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d~~g~tpL~~A 183 (480)
T PHA03100 110 LLYAISKKSNSYSIV----EYLLDNGANVNIKNSDGENLLHLYLESNK--IDLKILKLLIDKGVDINAKNRYGYTPLHIA 183 (480)
T ss_pred hhHHHhcccChHHHH----HHHHHcCCCCCccCCCCCcHHHHHHHcCC--ChHHHHHHHHHCCCCcccccCCCCCHHHHH
Confidence 333332 55655443 44445555443321 2344555556662 122344555566665543221 2344455
Q ss_pred HcCCChHHHHHHHHHHHHcCCCCC
Q 009556 228 RDNGMWKKAVGIVEEIREMGLSLD 251 (532)
Q Consensus 228 ~~~~~~~~a~~~~~~~~~~~~~~~ 251 (532)
+..|+.+- .+.+.+.|..++
T Consensus 184 ~~~~~~~i----v~~Ll~~ga~~~ 203 (480)
T PHA03100 184 VEKGNIDV----IKFLLDNGADIN 203 (480)
T ss_pred HHhCCHHH----HHHHHHcCCCcc
Confidence 56665543 344444554433
No 491
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.23 E-value=8.2e+02 Score=25.09 Aligned_cols=53 Identities=15% Similarity=0.105 Sum_probs=26.6
Q ss_pred HHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHH-hcCCcccHHHHHHHH
Q 009556 331 CLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYG-QYGRFRDPEECIAAL 383 (532)
Q Consensus 331 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~a~~~~~~~ 383 (532)
.+.+.|-+..|.+.-+.+.+....-|+.....+|+.|+ ++.++.-.++++++.
T Consensus 351 ~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 351 SLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34455555555555555555544445555555555554 334444445554444
No 492
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=23.03 E-value=3.8e+02 Score=21.05 Aligned_cols=42 Identities=21% Similarity=0.464 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCcChHHHHHH
Q 009556 445 EALSVYHLMKDIGISPDLV-TYSTLMKAFIRAKKFHKVPEIYK 486 (532)
Q Consensus 445 ~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~ 486 (532)
+..++|..|...|+--... .|......+-..|++.+|.++|+
T Consensus 81 dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 81 EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3555666666665544333 44555556666677777776664
No 493
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=22.88 E-value=1.6e+02 Score=16.64 Aligned_cols=22 Identities=18% Similarity=0.422 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHcCCCCCHhHHH
Q 009556 93 IDEAMALLAQMQALGFHPSSISYA 116 (532)
Q Consensus 93 ~~~A~~~~~~m~~~~~~~~~~~~~ 116 (532)
++.|..+|++.... .|++.+|.
T Consensus 3 ~dRAR~IyeR~v~~--hp~~k~Wi 24 (32)
T PF02184_consen 3 FDRARSIYERFVLV--HPEVKNWI 24 (32)
T ss_pred HHHHHHHHHHHHHh--CCCchHHH
Confidence 45555566555543 35554443
No 494
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=22.86 E-value=5e+02 Score=22.39 Aligned_cols=35 Identities=11% Similarity=0.122 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHH
Q 009556 393 SMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLV 428 (532)
Q Consensus 393 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 428 (532)
...+.+++.|...|+++.|.+.|.-+.... ..|..
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR 76 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIR 76 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChH
Confidence 346677788888888888888888777653 44544
No 495
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=22.84 E-value=7.3e+02 Score=24.35 Aligned_cols=88 Identities=13% Similarity=0.081 Sum_probs=49.9
Q ss_pred CCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH--------HhccCCHHHHHHHHHHHHhCC
Q 009556 211 KGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDT--------FGKYGELVEALEVFEKMQQES 282 (532)
Q Consensus 211 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~~ 282 (532)
..+.||.++.+.+...++..-..+-...+|+-..+.+ .|-.+.+-++|-. -.+...-++++++++.|...=
T Consensus 177 kkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa-DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L 255 (669)
T KOG3636|consen 177 KKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA-DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQL 255 (669)
T ss_pred cccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhc
Confidence 4567777777777777776667777777777776654 2232222222211 123445677777777776442
Q ss_pred CCCCHHHHHHHHHHHHH
Q 009556 283 IRPDIVTWNSLIRWHCK 299 (532)
Q Consensus 283 ~~p~~~~~~~li~~~~~ 299 (532)
-.-|+.-+-.|...|+.
T Consensus 256 ~~eDvpDffsLAqyY~~ 272 (669)
T KOG3636|consen 256 SVEDVPDFFSLAQYYSD 272 (669)
T ss_pred ccccchhHHHHHHHHhh
Confidence 22245555555555543
No 496
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=22.72 E-value=7.5e+02 Score=24.43 Aligned_cols=59 Identities=17% Similarity=0.301 Sum_probs=40.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCC
Q 009556 431 NVLINAFGVAGKYKEALSVYHLMKDIGIS--PDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSG 492 (532)
Q Consensus 431 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 492 (532)
..|+.-|...|+..+|.+.++++ |++ -....+.+++.+.-+.|+-...+.+++..-+.|
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeL---gmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKEL---GMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHh---CCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 45677788888888888777654 322 234567778888888887666677776665544
No 497
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=22.66 E-value=6.5e+02 Score=23.68 Aligned_cols=17 Identities=18% Similarity=0.278 Sum_probs=11.5
Q ss_pred HcCCHHHHHHHHHHHHH
Q 009556 299 KAGDVAKALELFTQMQE 315 (532)
Q Consensus 299 ~~g~~~~A~~~~~~m~~ 315 (532)
...++.+|-.+|-+...
T Consensus 193 svR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 193 SVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHhHHHHHHHHHHHcc
Confidence 44577888877776553
No 498
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=22.43 E-value=6.9e+02 Score=23.90 Aligned_cols=220 Identities=13% Similarity=0.054 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC---HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHH
Q 009556 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPS---SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (532)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (532)
+++.+-.++.+.++...-++...+....-.+.+ ......++..+.+.+++..+...++.-...-...|...--..+-
T Consensus 104 lc~~l~~~~~~~~~p~~gi~ii~~av~k~~~~~~qlT~~H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~fL 183 (422)
T KOG2582|consen 104 LCHDLTEAVVKKNKPLRGIRIIMQAVDKMQPSNGQLTSIHADLLQLCLEAKDYASVLPYLDDDIVEICKANPHLDPKYFL 183 (422)
T ss_pred HHHHHHHHHHhcCCccccchHHHHHHHHhccCccchhhhHHHHHHHHHHhhcccccCCccchhHHHHhccCCCCCHHHHH
Q ss_pred HHHhcC--------ChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh--------cCChHHHHHHHHHHHHCCCCcCHHh
Q 009556 156 GFLKKG--------LLGLGSRLLMVMEDMGICRNQETYEILLDYHVN--------AGRLDDTWLIINEMRSKGFQLNSFV 219 (532)
Q Consensus 156 ~~~~~g--------~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~--------~~~~~~a~~~~~~m~~~~~~~~~~~ 219 (532)
.|+-.| +++.|..+|+...-. |....-...+.+|-+ .|+....-+.=..-..+-.+|-...
T Consensus 184 ~Y~yYgg~iciglk~fe~Al~~~e~~v~~---Pa~~vs~~hlEaYkkylLvsLI~~GK~~ql~k~ts~~~~r~~K~ms~p 260 (422)
T KOG2582|consen 184 LYLYYGGMICIGLKRFERALYLLEICVTT---PAMAVSHIHLEAYKKYLLVSLILTGKVFQLPKNTSQNAGRFFKPMSNP 260 (422)
T ss_pred HHHHhcceeeeccccHHHHHHHHHHHHhc---chhHHHHHHHHHHHHHHHHHhhhcCceeeccccchhhhHHhcccCCch
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHH----HH
Q 009556 220 YGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSL----IR 295 (532)
Q Consensus 220 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l----i~ 295 (532)
|..++++|.+...-+ .+.+..+-.++ +.+-++..-|......+..+.+..=..+|.++ |.
T Consensus 261 Y~ef~~~Y~~~~~~e-Lr~lVk~~~~r---------------F~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA 324 (422)
T KOG2582|consen 261 YHEFLNVYLKDSSTE-LRTLVKKHSER---------------FTKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIA 324 (422)
T ss_pred HHHHHHHHhcCCcHH-HHHHHHHHHHH---------------HhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q ss_pred HHHHcCCHHHHHHHHHHHHHCC
Q 009556 296 WHCKAGDVAKALELFTQMQEQG 317 (532)
Q Consensus 296 ~~~~~g~~~~A~~~~~~m~~~~ 317 (532)
...+.+..++|.+..-+|.+.|
T Consensus 325 ~~vQLa~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 325 SRVQLASAQEVEKYILQMIEDG 346 (422)
T ss_pred HHHHhcchHHHHHHHHHHhccC
No 499
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=22.42 E-value=2.2e+02 Score=24.39 Aligned_cols=39 Identities=18% Similarity=0.112 Sum_probs=22.1
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009556 438 GVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAK 476 (532)
Q Consensus 438 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 476 (532)
...++-+++.++.++..+.|..|.......+.-+..+-|
T Consensus 6 ll~~d~~~~~~~v~~~l~~g~~~~~i~~~~l~p~m~~iG 44 (197)
T TIGR02370 6 IFEGEEDDVVEGAQKALDAGIDPIELIEKGLMAGMGVVG 44 (197)
T ss_pred HHhcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 345666667777776666666555444444544444444
No 500
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=21.74 E-value=1.9e+02 Score=24.87 Aligned_cols=38 Identities=18% Similarity=0.224 Sum_probs=21.3
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009556 439 VAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAK 476 (532)
Q Consensus 439 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 476 (532)
-.++-+++.+++++....|..|.......+.-+..+-|
T Consensus 6 l~~D~~~~~~~v~~~l~~g~~~~~i~~~~l~p~m~~vG 43 (201)
T cd02070 6 VDGDEEETVELVKKALEAGIDPQDIIEEGLAPGMDIVG 43 (201)
T ss_pred HcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 34566666666666666665555444445554444444
Done!