Query 009556
Match_columns 532
No_of_seqs 786 out of 2454
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 07:50:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009556.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009556hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2.6E-38 8.7E-43 324.8 38.9 431 73-516 80-569 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.4E-36 4.9E-41 311.8 39.5 420 73-505 113-592 (597)
3 4g26_A Pentatricopeptide repea 100.0 3.4E-31 1.2E-35 260.8 25.3 211 98-334 11-222 (501)
4 1w3b_A UDP-N-acetylglucosamine 100.0 1.4E-27 4.8E-32 231.2 49.5 383 83-476 5-387 (388)
5 4g26_A Pentatricopeptide repea 100.0 3.7E-31 1.3E-35 260.6 24.5 188 78-265 27-223 (501)
6 1w3b_A UDP-N-acetylglucosamine 100.0 6.2E-27 2.1E-31 226.6 47.3 380 118-509 5-385 (388)
7 2gw1_A Mitochondrial precursor 99.9 4.3E-24 1.5E-28 214.7 38.5 414 77-502 6-487 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 4.2E-22 1.4E-26 196.7 41.1 315 75-420 24-357 (450)
9 2y4t_A DNAJ homolog subfamily 99.9 4.9E-22 1.7E-26 196.2 41.3 393 94-520 9-448 (450)
10 3fp2_A TPR repeat-containing p 99.9 6.5E-22 2.2E-26 200.0 38.6 402 76-491 24-491 (537)
11 2gw1_A Mitochondrial precursor 99.9 2.6E-21 9E-26 194.3 35.4 375 75-457 37-479 (514)
12 3fp2_A TPR repeat-containing p 99.9 2.1E-19 7.2E-24 181.5 35.7 389 112-515 25-480 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 1.6E-18 5.6E-23 165.1 39.6 333 76-439 2-352 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 3.7E-18 1.3E-22 162.7 41.1 334 111-475 2-353 (359)
15 2xm6_A Protein corresponding t 99.9 1.3E-16 4.3E-21 159.0 49.0 353 76-458 38-434 (490)
16 2xm6_A Protein corresponding t 99.9 1.8E-16 6.2E-21 157.9 49.2 366 96-494 26-435 (490)
17 2ooe_A Cleavage stimulation fa 99.8 5.6E-17 1.9E-21 163.2 42.8 407 76-490 12-491 (530)
18 3hym_B Cell division cycle pro 99.8 7.1E-18 2.4E-22 158.8 33.7 292 74-372 19-320 (330)
19 3hym_B Cell division cycle pro 99.8 5.6E-18 1.9E-22 159.5 32.1 301 109-443 19-321 (330)
20 1fch_A Peroxisomal targeting s 99.8 1E-17 3.5E-22 160.4 27.5 259 87-350 35-313 (368)
21 2ooe_A Cleavage stimulation fa 99.8 6.8E-16 2.3E-20 155.3 41.3 403 100-512 2-478 (530)
22 4eqf_A PEX5-related protein; a 99.8 2.4E-17 8.2E-22 157.7 26.5 267 75-346 63-351 (365)
23 1fch_A Peroxisomal targeting s 99.8 7.6E-17 2.6E-21 154.3 29.2 266 76-346 63-354 (368)
24 1b89_A Protein (clathrin heavy 99.8 6.1E-18 2.1E-22 158.9 20.3 352 89-491 15-385 (449)
25 3spa_A Mtrpol, DNA-directed RN 99.8 6E-19 2.1E-23 178.6 12.6 151 76-231 126-286 (1134)
26 3cv0_A Peroxisome targeting si 99.8 9.9E-17 3.4E-21 150.7 27.0 265 76-346 20-310 (327)
27 4eqf_A PEX5-related protein; a 99.8 1.3E-16 4.4E-21 152.6 25.3 267 111-417 64-352 (365)
28 3spa_A Mtrpol, DNA-directed RN 99.8 2.3E-18 7.8E-23 174.4 11.7 138 354-496 124-265 (1134)
29 3cv0_A Peroxisome targeting si 99.8 5.5E-16 1.9E-20 145.6 27.1 280 112-419 21-313 (327)
30 4g1t_A Interferon-induced prot 99.8 2.5E-15 8.5E-20 149.0 33.0 391 76-499 50-468 (472)
31 3mkr_A Coatomer subunit epsilo 99.7 1.6E-15 5.4E-20 139.5 27.2 253 84-352 6-265 (291)
32 3mkr_A Coatomer subunit epsilo 99.7 1.7E-15 5.8E-20 139.2 27.1 252 119-386 6-264 (291)
33 1xi4_A Clathrin heavy chain; a 99.7 6.2E-14 2.1E-18 146.9 41.4 349 111-517 984-1334(1630)
34 1b89_A Protein (clathrin heavy 99.7 4.5E-16 1.5E-20 146.2 22.6 267 76-380 31-305 (449)
35 4g1t_A Interferon-induced prot 99.7 2E-14 6.9E-19 142.5 35.1 374 110-516 49-449 (472)
36 1xi4_A Clathrin heavy chain; a 99.7 1.8E-13 6.1E-18 143.5 42.6 338 79-474 987-1326(1630)
37 3uq3_A Heat shock protein STI1 99.7 4.9E-14 1.7E-18 127.2 25.0 225 77-315 5-235 (258)
38 2pl2_A Hypothetical conserved 99.7 2.7E-14 9.2E-19 125.3 22.5 197 76-278 4-211 (217)
39 3uq3_A Heat shock protein STI1 99.6 5.6E-14 1.9E-18 126.8 23.6 221 220-454 8-234 (258)
40 3e4b_A ALGK; tetratricopeptide 99.6 3.1E-14 1.1E-18 139.6 23.0 348 82-458 8-389 (452)
41 2pl2_A Hypothetical conserved 99.6 4.4E-14 1.5E-18 123.9 21.7 199 109-313 2-211 (217)
42 1ouv_A Conserved hypothetical 99.6 1.8E-12 6E-17 118.3 32.2 224 76-317 5-252 (273)
43 3e4b_A ALGK; tetratricopeptide 99.6 6.5E-14 2.2E-18 137.3 23.4 345 117-494 8-390 (452)
44 2h6f_A Protein farnesyltransfe 99.6 7E-13 2.4E-17 126.0 27.9 232 77-315 97-347 (382)
45 1ouv_A Conserved hypothetical 99.6 4.9E-12 1.7E-16 115.3 32.3 223 252-492 6-252 (273)
46 2ho1_A Type 4 fimbrial biogene 99.6 7E-13 2.4E-17 119.3 26.2 200 77-280 37-237 (252)
47 2vq2_A PILW, putative fimbrial 99.6 8.2E-13 2.8E-17 116.4 26.0 200 77-279 8-209 (225)
48 4e6h_A MRNA 3'-END-processing 99.6 3E-11 1E-15 122.5 40.2 427 75-507 64-584 (679)
49 2q7f_A YRRB protein; TPR, prot 99.6 1.4E-13 4.7E-18 123.1 20.8 205 72-281 18-222 (243)
50 2ho1_A Type 4 fimbrial biogene 99.6 1.5E-12 5.2E-17 117.0 27.1 201 112-316 37-238 (252)
51 2vq2_A PILW, putative fimbrial 99.6 1.9E-12 6.5E-17 114.0 27.1 204 110-316 6-211 (225)
52 3u4t_A TPR repeat-containing p 99.6 5E-13 1.7E-17 121.7 23.8 234 79-316 5-250 (272)
53 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.1E-13 3.7E-18 126.4 18.2 247 89-345 17-269 (275)
54 2h6f_A Protein farnesyltransfe 99.6 1.3E-12 4.3E-17 124.2 25.6 249 112-368 97-364 (382)
55 3u4t_A TPR repeat-containing p 99.6 1.4E-12 4.9E-17 118.7 25.2 234 114-351 5-250 (272)
56 2q7f_A YRRB protein; TPR, prot 99.5 1.1E-12 3.7E-17 117.2 21.2 201 111-316 22-222 (243)
57 3sf4_A G-protein-signaling mod 99.5 5.7E-13 1.9E-17 129.0 19.6 299 74-373 6-363 (406)
58 1xnf_A Lipoprotein NLPI; TPR, 99.5 7E-13 2.4E-17 120.9 17.6 225 76-310 42-269 (275)
59 4a1s_A PINS, partner of inscut 99.5 1.5E-12 5.2E-17 126.4 20.8 238 76-314 47-330 (411)
60 2ond_A Cleavage stimulation fa 99.5 5.5E-11 1.9E-15 110.3 29.7 235 78-316 9-270 (308)
61 3sf4_A G-protein-signaling mod 99.5 1.2E-12 4.2E-17 126.6 19.0 303 146-480 8-365 (406)
62 4a1s_A PINS, partner of inscut 99.5 1.5E-12 5E-17 126.5 19.2 201 113-314 49-290 (411)
63 3ro2_A PINS homolog, G-protein 99.5 3E-12 1E-16 120.2 19.7 234 79-313 7-289 (338)
64 4e6h_A MRNA 3'-END-processing 99.5 7.4E-10 2.5E-14 112.3 38.2 414 91-512 46-552 (679)
65 3vtx_A MAMA; tetratricopeptide 99.4 3.2E-11 1.1E-15 102.6 23.0 167 76-246 4-170 (184)
66 3ro2_A PINS homolog, G-protein 99.4 7.9E-12 2.7E-16 117.3 19.9 275 114-420 7-331 (338)
67 3ulq_A Response regulator aspa 99.4 4E-11 1.4E-15 115.1 24.3 225 88-314 23-291 (383)
68 3ulq_A Response regulator aspa 99.4 2.3E-11 7.7E-16 116.9 22.4 227 226-454 112-366 (383)
69 3nf1_A KLC 1, kinesin light ch 99.4 2.7E-12 9.4E-17 119.2 14.7 170 76-245 26-223 (311)
70 2ond_A Cleavage stimulation fa 99.4 4.4E-10 1.5E-14 104.2 29.5 217 129-350 33-269 (308)
71 4abn_A Tetratricopeptide repea 99.4 1.2E-11 4.1E-16 122.0 19.6 216 127-348 83-318 (474)
72 3vtx_A MAMA; tetratricopeptide 99.4 9.5E-11 3.2E-15 99.6 22.8 166 111-280 4-169 (184)
73 4abn_A Tetratricopeptide repea 99.4 4.2E-11 1.4E-15 118.1 22.7 212 234-451 85-316 (474)
74 3nf1_A KLC 1, kinesin light ch 99.3 1.2E-11 4.3E-16 114.7 15.2 100 146-245 26-139 (311)
75 3q15_A PSP28, response regulat 99.3 3.3E-10 1.1E-14 108.5 24.9 241 74-315 7-289 (378)
76 1hz4_A MALT regulatory protein 99.3 1.6E-09 5.4E-14 103.5 28.3 268 82-349 19-320 (373)
77 1hz4_A MALT regulatory protein 99.3 1E-09 3.4E-14 104.9 26.6 272 187-489 19-320 (373)
78 3as5_A MAMA; tetratricopeptide 99.3 2.7E-10 9.2E-15 96.6 19.9 164 78-245 9-172 (186)
79 3q15_A PSP28, response regulat 99.3 5.6E-10 1.9E-14 106.9 23.7 227 226-454 110-363 (378)
80 4gyw_A UDP-N-acetylglucosamine 99.3 2.6E-10 9E-15 117.0 21.3 165 77-245 9-173 (723)
81 3as5_A MAMA; tetratricopeptide 99.2 9.1E-10 3.1E-14 93.3 20.0 162 113-278 9-170 (186)
82 4gyw_A UDP-N-acetylglucosamine 99.2 5.8E-10 2E-14 114.5 20.4 168 109-280 6-173 (723)
83 4i17_A Hypothetical protein; T 99.2 5.5E-09 1.9E-13 92.0 22.5 198 288-499 8-215 (228)
84 4i17_A Hypothetical protein; T 99.2 6.1E-09 2.1E-13 91.7 22.6 194 76-281 6-209 (228)
85 3edt_B KLC 2, kinesin light ch 99.2 4.3E-10 1.5E-14 102.5 15.3 227 89-316 13-281 (283)
86 3edt_B KLC 2, kinesin light ch 99.1 7.6E-10 2.6E-14 100.8 15.0 228 124-351 13-281 (283)
87 2fo7_A Synthetic consensus TPR 99.1 5.7E-09 2E-13 82.9 17.8 130 79-211 3-132 (136)
88 2uy1_A Cleavage stimulation fa 99.1 6.5E-08 2.2E-12 95.2 28.4 370 78-490 16-412 (493)
89 1qqe_A Vesicular transport pro 99.1 1.2E-08 4.2E-13 93.6 19.6 97 184-280 119-227 (292)
90 3mv2_B Coatomer subunit epsilo 99.1 1.2E-07 4E-12 85.5 25.2 206 191-418 22-237 (310)
91 3mv2_B Coatomer subunit epsilo 99.0 1.3E-07 4.3E-12 85.3 23.7 145 84-246 20-165 (310)
92 3urz_A Uncharacterized protein 99.0 2.2E-08 7.6E-13 86.7 17.9 112 81-195 8-135 (208)
93 2fo7_A Synthetic consensus TPR 99.0 3.5E-08 1.2E-12 78.3 17.8 129 114-245 3-131 (136)
94 2uy1_A Cleavage stimulation fa 99.0 4.2E-06 1.4E-10 82.3 35.5 342 74-455 44-412 (493)
95 1qqe_A Vesicular transport pro 99.0 3E-08 1E-12 90.9 18.9 205 267-488 32-266 (292)
96 3qky_A Outer membrane assembly 99.0 3.2E-08 1.1E-12 89.1 18.7 186 76-281 14-224 (261)
97 3dra_A Protein farnesyltransfe 99.0 8.2E-07 2.8E-11 80.8 27.6 223 88-315 43-286 (306)
98 3qky_A Outer membrane assembly 98.9 5.8E-08 2E-12 87.4 18.9 212 109-340 12-250 (261)
99 3urz_A Uncharacterized protein 98.9 3.9E-08 1.3E-12 85.1 16.9 191 287-504 4-197 (208)
100 2pzi_A Probable serine/threoni 98.9 1.2E-08 4E-13 105.3 15.6 172 123-301 402-582 (681)
101 2r5s_A Uncharacterized protein 98.9 2.4E-08 8.2E-13 83.9 14.3 162 80-245 9-172 (176)
102 2pzi_A Probable serine/threoni 98.9 6.7E-08 2.3E-12 99.7 18.6 173 263-442 402-583 (681)
103 3dra_A Protein farnesyltransfe 98.9 2.9E-06 1E-10 77.2 27.2 219 127-350 48-286 (306)
104 3rjv_A Putative SEL1 repeat pr 98.9 2.5E-07 8.5E-12 80.2 19.1 175 95-281 4-197 (212)
105 4ga2_A E3 SUMO-protein ligase 98.9 1.5E-08 5.2E-13 82.5 10.4 142 86-231 6-148 (150)
106 2vsy_A XCC0866; transferase, g 98.8 1E-07 3.6E-12 96.4 18.4 153 91-247 3-158 (568)
107 3qou_A Protein YBBN; thioredox 98.8 1E-07 3.4E-12 87.1 16.6 167 109-279 114-282 (287)
108 2yhc_A BAMD, UPF0169 lipoprote 98.8 4.1E-07 1.4E-11 79.7 19.8 184 77-282 4-214 (225)
109 3rjv_A Putative SEL1 repeat pr 98.8 5.5E-07 1.9E-11 78.0 20.4 176 130-317 4-198 (212)
110 2r5s_A Uncharacterized protein 98.8 5.1E-08 1.8E-12 81.8 12.7 78 411-489 93-171 (176)
111 3qou_A Protein YBBN; thioredox 98.8 1.1E-07 3.9E-12 86.8 15.9 168 144-315 114-283 (287)
112 2ifu_A Gamma-SNAP; membrane fu 98.8 6.8E-08 2.3E-12 89.3 14.2 55 260-314 44-103 (307)
113 2yhc_A BAMD, UPF0169 lipoprote 98.8 1.2E-06 4E-11 76.8 20.6 188 111-317 3-214 (225)
114 4ga2_A E3 SUMO-protein ligase 98.8 4.5E-08 1.5E-12 79.7 10.5 142 121-266 6-148 (150)
115 2ifu_A Gamma-SNAP; membrane fu 98.8 3.1E-07 1.1E-11 84.8 17.1 225 90-343 4-253 (307)
116 1hh8_A P67PHOX, NCF-2, neutrop 98.7 7.7E-07 2.6E-11 77.1 18.4 131 78-213 7-152 (213)
117 2vsy_A XCC0866; transferase, g 98.7 3.5E-07 1.2E-11 92.5 18.1 154 125-282 2-158 (568)
118 3q7a_A Farnesyltransferase alp 98.7 1.3E-05 4.3E-10 73.8 25.9 183 80-267 57-257 (349)
119 1a17_A Serine/threonine protei 98.7 8.6E-07 3E-11 73.1 16.5 130 77-209 13-144 (166)
120 4gco_A Protein STI-1; structur 98.7 7.6E-07 2.6E-11 69.8 14.9 98 78-177 14-111 (126)
121 1na0_A Designed protein CTPR3; 98.7 1E-06 3.5E-11 68.5 15.4 113 77-192 9-121 (125)
122 2lni_A Stress-induced-phosphop 98.7 9.3E-07 3.2E-11 69.8 15.3 122 72-196 11-132 (133)
123 3u3w_A Transcriptional activat 98.6 7.5E-06 2.6E-10 74.9 22.4 160 154-313 82-263 (293)
124 3q7a_A Farnesyltransferase alp 98.6 3.7E-05 1.3E-09 70.7 26.0 172 126-302 68-257 (349)
125 3u3w_A Transcriptional activat 98.6 2.8E-06 9.5E-11 77.8 18.7 126 83-208 81-222 (293)
126 2vyi_A SGTA protein; chaperone 98.6 1.7E-06 5.7E-11 67.9 14.7 119 76-197 11-129 (131)
127 2e2e_A Formate-dependent nitri 98.6 5.6E-07 1.9E-11 75.4 12.4 135 368-507 21-158 (177)
128 1hh8_A P67PHOX, NCF-2, neutrop 98.6 4E-06 1.4E-10 72.4 17.9 129 114-247 8-151 (213)
129 2c2l_A CHIP, carboxy terminus 98.6 6.3E-07 2.1E-11 81.5 13.2 97 77-175 4-100 (281)
130 2qfc_A PLCR protein; TPR, HTH, 98.6 1.5E-05 5.2E-10 72.8 22.2 164 289-452 77-262 (293)
131 2e2e_A Formate-dependent nitri 98.5 1.5E-06 5E-11 72.8 14.0 122 88-212 21-145 (177)
132 3gw4_A Uncharacterized protein 98.5 1E-06 3.5E-11 75.5 13.3 156 88-244 3-174 (203)
133 3gyz_A Chaperone protein IPGC; 98.5 1.1E-06 3.9E-11 71.0 12.6 98 77-176 36-133 (151)
134 2qfc_A PLCR protein; TPR, HTH, 98.5 1.3E-05 4.4E-10 73.3 21.2 126 153-278 121-263 (293)
135 1a17_A Serine/threonine protei 98.5 3.9E-06 1.3E-10 69.1 16.2 128 113-243 14-143 (166)
136 3gyz_A Chaperone protein IPGC; 98.5 8.8E-07 3E-11 71.7 11.7 102 393-498 37-138 (151)
137 4gco_A Protein STI-1; structur 98.5 3.7E-06 1.3E-10 65.8 14.8 97 113-211 14-110 (126)
138 1na0_A Designed protein CTPR3; 98.5 4.3E-06 1.5E-10 64.9 15.0 98 112-211 9-106 (125)
139 4f3v_A ESX-1 secretion system 98.5 1.9E-06 6.5E-11 76.6 13.6 187 89-281 18-237 (282)
140 1p5q_A FKBP52, FK506-binding p 98.5 3.9E-06 1.3E-10 78.4 16.0 129 112-243 147-291 (336)
141 2c2l_A CHIP, carboxy terminus 98.5 1.8E-06 6.3E-11 78.4 13.4 99 111-211 3-101 (281)
142 3gw4_A Uncharacterized protein 98.5 2.2E-06 7.4E-11 73.5 13.1 86 123-209 3-93 (203)
143 2vyi_A SGTA protein; chaperone 98.4 6.8E-06 2.3E-10 64.3 14.6 118 112-232 12-129 (131)
144 2vgx_A Chaperone SYCD; alterna 98.4 1.2E-06 4.1E-11 70.9 10.3 92 81-174 25-116 (148)
145 1elw_A TPR1-domain of HOP; HOP 98.4 9.7E-06 3.3E-10 62.1 15.2 99 77-177 4-102 (118)
146 3upv_A Heat shock protein STI1 98.4 6.2E-06 2.1E-10 64.4 14.2 98 77-176 4-101 (126)
147 3dss_A Geranylgeranyl transfer 98.4 0.00014 4.7E-09 66.6 24.7 138 88-229 40-191 (331)
148 2lni_A Stress-induced-phosphop 98.4 5.8E-06 2E-10 65.0 13.8 100 110-211 14-113 (133)
149 2vgx_A Chaperone SYCD; alterna 98.4 7.1E-06 2.4E-10 66.3 14.3 110 99-211 9-118 (148)
150 4f3v_A ESX-1 secretion system 98.4 8.1E-06 2.8E-10 72.6 14.8 187 124-316 18-237 (282)
151 2kck_A TPR repeat; tetratricop 98.4 6.7E-06 2.3E-10 62.3 12.1 99 77-177 6-107 (112)
152 2xcb_A PCRH, regulatory protei 98.3 8.5E-06 2.9E-10 65.3 13.0 98 77-176 18-115 (142)
153 4gcn_A Protein STI-1; structur 98.3 1.1E-05 3.9E-10 63.0 13.0 97 78-175 9-111 (127)
154 4gcn_A Protein STI-1; structur 98.3 7.5E-06 2.6E-10 64.1 11.9 105 394-501 10-120 (127)
155 3q49_B STIP1 homology and U bo 98.3 3.3E-05 1.1E-09 61.1 16.0 99 390-490 7-105 (137)
156 3upv_A Heat shock protein STI1 98.3 1.6E-05 5.6E-10 62.0 13.9 95 394-490 6-100 (126)
157 1p5q_A FKBP52, FK506-binding p 98.3 1.5E-05 5E-10 74.5 15.7 130 147-278 147-291 (336)
158 2fbn_A 70 kDa peptidylprolyl i 98.3 1.1E-05 3.7E-10 68.9 13.7 129 77-208 38-183 (198)
159 3sz7_A HSC70 cochaperone (SGT) 98.3 1.7E-05 5.9E-10 65.2 14.2 101 75-177 9-109 (164)
160 1elr_A TPR2A-domain of HOP; HO 98.3 8.5E-06 2.9E-10 63.8 11.7 108 78-188 5-118 (131)
161 3q49_B STIP1 homology and U bo 98.3 2.1E-05 7E-10 62.3 14.0 98 76-175 8-105 (137)
162 1elw_A TPR1-domain of HOP; HOP 98.3 4.4E-05 1.5E-09 58.2 15.5 98 112-211 4-101 (118)
163 1elr_A TPR2A-domain of HOP; HO 98.3 1.3E-05 4.3E-10 62.7 12.6 115 393-510 5-125 (131)
164 2xcb_A PCRH, regulatory protei 98.3 7.4E-06 2.5E-10 65.6 10.8 98 112-211 18-115 (142)
165 2dba_A Smooth muscle cell asso 98.2 3.8E-05 1.3E-09 61.6 15.0 100 75-177 26-129 (148)
166 3dss_A Geranylgeranyl transfer 98.2 0.0015 5E-08 59.8 26.9 188 124-316 41-267 (331)
167 2kck_A TPR repeat; tetratricop 98.2 1.3E-05 4.5E-10 60.7 11.5 99 111-211 5-106 (112)
168 3sz7_A HSC70 cochaperone (SGT) 98.2 3.5E-05 1.2E-09 63.3 14.8 95 394-490 13-107 (164)
169 2fbn_A 70 kDa peptidylprolyl i 98.2 2.1E-06 7.1E-11 73.4 7.5 120 88-210 15-150 (198)
170 1hxi_A PEX5, peroxisome target 98.2 1.2E-05 4.1E-10 62.3 11.1 96 79-176 19-114 (121)
171 4b4t_Q 26S proteasome regulato 98.2 8.7E-05 3E-09 71.9 19.2 196 84-279 11-243 (434)
172 2xev_A YBGF; tetratricopeptide 98.1 0.00014 4.9E-09 56.6 15.2 94 81-176 6-105 (129)
173 2dba_A Smooth muscle cell asso 98.1 0.00014 4.7E-09 58.2 14.9 100 109-211 25-128 (148)
174 3ro3_A PINS homolog, G-protein 98.1 3E-05 1E-09 63.2 11.0 132 77-208 9-155 (164)
175 1hxi_A PEX5, peroxisome target 98.1 4.5E-05 1.5E-09 59.0 11.1 95 115-211 20-114 (121)
176 4b4t_Q 26S proteasome regulato 98.1 0.00026 8.9E-09 68.5 19.2 165 185-349 58-243 (434)
177 2xev_A YBGF; tetratricopeptide 98.1 8.6E-05 2.9E-09 57.9 12.9 99 397-499 7-111 (129)
178 1wao_1 Serine/threonine protei 98.0 1.4E-05 4.7E-10 78.5 9.8 119 85-206 14-134 (477)
179 1ihg_A Cyclophilin 40; ppiase 98.0 6.7E-05 2.3E-09 70.8 13.5 121 79-201 225-360 (370)
180 3rkv_A Putative peptidylprolyl 98.0 6.7E-05 2.3E-09 61.5 11.9 110 395-507 14-141 (162)
181 3rkv_A Putative peptidylprolyl 98.0 0.0001 3.5E-09 60.3 12.8 99 77-176 11-126 (162)
182 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 8.8E-05 3E-09 72.4 14.4 88 148-237 318-405 (457)
183 3k9i_A BH0479 protein; putativ 98.0 2.1E-05 7.1E-10 60.5 7.4 87 89-176 2-90 (117)
184 3ro3_A PINS homolog, G-protein 97.9 6.6E-05 2.3E-09 61.0 10.7 25 115-139 12-36 (164)
185 1wao_1 Serine/threonine protei 97.9 4.5E-05 1.5E-09 74.8 10.1 117 367-486 16-134 (477)
186 3k9i_A BH0479 protein; putativ 97.9 5.3E-05 1.8E-09 58.1 8.4 86 370-456 3-90 (117)
187 2hr2_A Hypothetical protein; a 97.9 0.00023 7.7E-09 57.0 12.1 95 78-175 12-130 (159)
188 1dce_A Protein (RAB geranylger 97.9 0.0011 3.8E-08 66.2 19.9 174 89-267 40-241 (567)
189 2if4_A ATFKBP42; FKBP-like, al 97.8 5.3E-05 1.8E-09 70.7 8.7 147 79-246 181-328 (338)
190 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 0.00031 1E-08 68.5 14.3 146 112-280 268-414 (457)
191 1ihg_A Cyclophilin 40; ppiase 97.8 0.00027 9.2E-09 66.7 13.0 138 114-273 225-362 (370)
192 2l6j_A TPR repeat-containing p 97.7 6.2E-05 2.1E-09 56.9 6.5 93 76-171 3-102 (111)
193 1dce_A Protein (RAB geranylger 97.7 0.0037 1.3E-07 62.5 20.4 172 199-375 46-244 (567)
194 2if4_A ATFKBP42; FKBP-like, al 97.7 0.00014 4.7E-09 67.8 9.4 147 322-490 179-327 (338)
195 3n71_A Histone lysine methyltr 97.7 0.00025 8.6E-09 69.1 11.3 87 88-174 320-420 (490)
196 1klx_A Cysteine rich protein B 97.6 0.0023 8E-08 50.5 14.9 109 198-317 11-127 (138)
197 1na3_A Designed protein CTPR2; 97.6 0.00069 2.3E-08 48.7 10.7 81 77-159 9-89 (91)
198 2hr2_A Hypothetical protein; a 97.6 0.0011 3.6E-08 53.1 12.3 97 113-209 12-129 (159)
199 2kat_A Uncharacterized protein 97.6 0.00036 1.2E-08 53.1 9.0 79 95-175 3-81 (115)
200 2l6j_A TPR repeat-containing p 97.6 9.4E-05 3.2E-09 55.8 5.5 90 393-485 5-101 (111)
201 1klx_A Cysteine rich protein B 97.6 0.0023 7.9E-08 50.5 13.8 77 91-175 9-89 (138)
202 3n71_A Histone lysine methyltr 97.5 0.00034 1.2E-08 68.2 9.5 123 333-455 320-463 (490)
203 1zu2_A Mitochondrial import re 97.5 0.00042 1.4E-08 55.4 8.0 99 88-190 13-132 (158)
204 2kat_A Uncharacterized protein 97.4 0.0017 5.7E-08 49.3 10.7 77 376-454 4-80 (115)
205 1na3_A Designed protein CTPR2; 97.4 0.0019 6.6E-08 46.2 10.5 80 112-193 9-88 (91)
206 1zu2_A Mitochondrial import re 97.2 0.00056 1.9E-08 54.6 6.4 70 369-440 14-93 (158)
207 3ma5_A Tetratricopeptide repea 97.1 0.0025 8.7E-08 46.9 8.9 64 76-140 6-69 (100)
208 3ma5_A Tetratricopeptide repea 97.1 0.0037 1.3E-07 46.0 9.0 65 110-175 5-69 (100)
209 3ly7_A Transcriptional activat 96.9 0.019 6.5E-07 52.8 13.6 75 424-502 274-348 (372)
210 3mkq_A Coatomer beta'-subunit; 96.8 0.095 3.3E-06 55.0 20.5 76 221-314 633-708 (814)
211 3ly7_A Transcriptional activat 96.8 0.053 1.8E-06 49.9 15.7 143 109-256 191-347 (372)
212 3mkq_A Coatomer beta'-subunit; 96.6 0.096 3.3E-06 55.0 19.0 155 85-278 607-762 (814)
213 2kc7_A BFR218_protein; tetratr 96.6 0.026 9E-07 40.9 10.6 59 83-142 6-65 (99)
214 3bee_A Putative YFRE protein; 96.6 0.019 6.5E-07 41.4 9.4 66 425-491 4-72 (93)
215 3qwp_A SET and MYND domain-con 96.4 0.018 6.1E-07 55.2 10.5 89 121-209 296-398 (429)
216 3qww_A SET and MYND domain-con 96.4 0.01 3.6E-07 56.7 8.8 85 90-174 311-409 (433)
217 1pc2_A Mitochondria fission pr 96.4 0.019 6.4E-07 45.3 8.7 95 409-507 15-114 (152)
218 3qwp_A SET and MYND domain-con 96.4 0.018 6.3E-07 55.1 10.5 92 399-490 294-399 (429)
219 3qww_A SET and MYND domain-con 96.1 0.016 5.5E-07 55.4 8.7 83 126-208 312-408 (433)
220 2kc7_A BFR218_protein; tetratr 96.1 0.041 1.4E-06 39.8 9.0 59 118-177 6-65 (99)
221 2v5f_A Prolyl 4-hydroxylase su 95.8 0.11 3.7E-06 38.2 10.2 66 76-141 4-75 (104)
222 3bee_A Putative YFRE protein; 95.8 0.15 5.3E-06 36.5 10.6 66 76-142 5-73 (93)
223 2v5f_A Prolyl 4-hydroxylase su 95.7 0.1 3.5E-06 38.3 9.7 66 430-497 8-79 (104)
224 3mkq_B Coatomer subunit alpha; 95.5 0.76 2.6E-05 37.2 16.1 100 157-277 15-114 (177)
225 1wy6_A Hypothetical protein ST 95.5 0.58 2E-05 35.6 14.0 59 188-247 97-155 (172)
226 3u64_A Protein TP_0956; tetrat 95.3 0.32 1.1E-05 42.9 12.8 92 93-186 179-281 (301)
227 1pc2_A Mitochondria fission pr 95.3 0.21 7E-06 39.4 10.5 82 93-176 14-100 (152)
228 1wy6_A Hypothetical protein ST 95.1 0.78 2.7E-05 34.9 15.7 140 298-459 18-157 (172)
229 3u64_A Protein TP_0956; tetrat 95.0 0.41 1.4E-05 42.2 12.6 91 128-220 179-280 (301)
230 4h7y_A Dual specificity protei 94.9 0.47 1.6E-05 36.9 11.2 54 161-215 74-127 (161)
231 3mkq_B Coatomer subunit alpha; 94.8 1.3 4.4E-05 35.8 17.2 19 399-417 96-114 (177)
232 4h7y_A Dual specificity protei 94.6 0.8 2.7E-05 35.7 11.7 51 371-422 74-124 (161)
233 3lvg_A Clathrin heavy chain 1; 94.5 0.00031 1E-08 65.9 -8.8 147 77-238 54-220 (624)
234 1nzn_A CGI-135 protein, fissio 94.1 0.26 8.8E-06 37.3 7.9 86 409-498 18-108 (126)
235 3lvg_A Clathrin heavy chain 1; 93.3 0.0019 6.4E-08 60.8 -6.0 217 75-307 81-324 (624)
236 1nzn_A CGI-135 protein, fissio 92.9 0.7 2.4E-05 34.9 8.6 92 83-176 7-103 (126)
237 2ff4_A Probable regulatory pro 92.8 0.62 2.1E-05 43.8 10.3 68 395-463 174-246 (388)
238 4ady_A RPN2, 26S proteasome re 91.8 14 0.00049 38.6 31.4 276 226-513 383-677 (963)
239 2ff4_A Probable regulatory pro 91.3 0.93 3.2E-05 42.6 9.6 72 115-187 174-250 (388)
240 1v54_E Cytochrome C oxidase po 91.1 1.9 6.6E-05 30.8 8.4 64 443-507 26-89 (109)
241 4gns_B Protein CSD3, chitin bi 90.4 1.8 6E-05 44.3 11.1 126 81-209 252-398 (754)
242 4b4t_P 26S proteasome regulato 89.8 14 0.00049 35.2 19.2 94 361-454 141-245 (445)
243 4gns_B Protein CSD3, chitin bi 89.4 2 6.7E-05 43.9 10.5 53 400-453 345-397 (754)
244 2y69_E Cytochrome C oxidase su 88.3 3.4 0.00012 31.3 8.4 64 443-507 69-132 (152)
245 3o48_A Mitochondria fission 1 88.1 5.6 0.00019 30.2 9.7 78 424-503 37-117 (134)
246 4ady_A RPN2, 26S proteasome re 88.1 28 0.00096 36.5 29.1 223 263-491 385-623 (963)
247 1v54_E Cytochrome C oxidase po 88.1 3.4 0.00012 29.5 7.8 63 302-365 25-87 (109)
248 4fhn_B Nucleoporin NUP120; pro 87.8 12 0.00041 40.8 16.2 51 83-138 818-868 (1139)
249 4fhn_B Nucleoporin NUP120; pro 87.7 21 0.00071 39.0 17.9 216 293-515 818-1084(1139)
250 3ffl_A Anaphase-promoting comp 83.4 10 0.00035 30.1 9.4 61 80-140 23-91 (167)
251 4b4t_R RPN7, 26S proteasome re 82.3 13 0.00044 35.3 11.8 97 114-210 133-236 (429)
252 2y69_E Cytochrome C oxidase su 82.1 13 0.00046 28.2 9.0 63 302-365 68-130 (152)
253 1y8m_A FIS1; mitochondria, unk 81.9 16 0.00053 28.2 12.2 78 424-503 36-116 (144)
254 2wpv_A GET4, UPF0363 protein Y 80.1 33 0.0011 30.7 18.5 111 80-205 36-157 (312)
255 4b4t_R RPN7, 26S proteasome re 80.0 18 0.0006 34.3 11.9 62 148-209 132-195 (429)
256 3esl_A Checkpoint serine/threo 79.7 22 0.00074 29.3 10.4 57 441-497 93-150 (202)
257 1qsa_A Protein (soluble lytic 79.4 53 0.0018 32.7 27.6 141 80-233 10-152 (618)
258 2wpv_A GET4, UPF0363 protein Y 79.2 35 0.0012 30.5 19.8 81 250-349 132-215 (312)
259 1zbp_A Hypothetical protein VP 77.2 7.7 0.00026 33.7 7.4 57 84-141 4-60 (273)
260 3eiq_C Programmed cell death p 76.8 15 0.0005 33.7 9.6 26 79-104 56-81 (358)
261 1zbp_A Hypothetical protein VP 75.6 12 0.00039 32.6 8.1 56 400-456 5-60 (273)
262 3lpz_A GET4 (YOR164C homolog); 73.7 52 0.0018 29.7 21.4 112 79-205 37-159 (336)
263 3o48_A Mitochondria fission 1 73.4 28 0.00095 26.4 10.1 17 297-313 88-104 (134)
264 1qsa_A Protein (soluble lytic 71.7 85 0.0029 31.3 33.4 334 81-450 76-436 (618)
265 3eiq_C Programmed cell death p 71.3 62 0.0021 29.6 12.7 76 395-471 220-297 (358)
266 3lpz_A GET4 (YOR164C homolog); 70.8 60 0.0021 29.3 21.7 81 250-349 134-214 (336)
267 3ffl_A Anaphase-promoting comp 69.5 39 0.0013 26.8 9.2 23 117-139 25-47 (167)
268 4a1g_A Mitotic checkpoint seri 66.3 45 0.0015 26.0 9.7 66 444-513 82-148 (152)
269 2nsz_A Programmed cell death p 65.3 41 0.0014 25.4 8.4 65 80-145 10-76 (129)
270 2uwj_G Type III export protein 65.0 35 0.0012 24.3 7.3 78 232-317 21-98 (115)
271 4b4t_P 26S proteasome regulato 63.9 1E+02 0.0034 29.3 25.8 50 126-175 30-84 (445)
272 2p58_C Putative type III secre 63.7 37 0.0013 24.2 8.0 51 261-317 49-99 (116)
273 3esl_A Checkpoint serine/threo 63.5 62 0.0021 26.6 9.9 53 128-180 95-148 (202)
274 2ion_A PDCD4, programmed cell 59.2 33 0.0011 26.8 7.1 64 80-144 12-77 (152)
275 2d2s_A Exocyst complex compone 58.6 77 0.0026 26.9 9.8 90 81-173 22-117 (235)
276 2zu6_B Programmed cell death p 58.2 80 0.0027 28.1 10.3 69 395-464 169-239 (307)
277 1y8m_A FIS1; mitochondria, unk 58.0 62 0.0021 24.9 12.5 69 284-352 36-107 (144)
278 2r9g_A AAA ATPase, central reg 57.4 79 0.0027 25.9 10.7 39 298-337 25-63 (204)
279 3ltm_A Alpha-REP4; protein eng 56.7 80 0.0027 25.8 17.5 91 180-279 93-183 (211)
280 2keb_A DNA polymerase subunit 54.7 53 0.0018 23.2 7.7 63 446-510 28-95 (101)
281 3txn_A 26S proteasome regulato 54.2 1.4E+02 0.0047 27.7 23.8 165 78-243 20-207 (394)
282 2fe3_A Peroxide operon regulat 53.2 75 0.0026 24.4 8.8 64 451-515 11-74 (145)
283 1wdy_A 2-5A-dependent ribonucl 53.1 16 0.00056 31.7 5.1 58 81-146 6-66 (285)
284 2wvi_A Mitotic checkpoint seri 52.1 86 0.003 24.8 10.7 55 444-498 77-132 (164)
285 2qx5_A Nucleoporin NIC96; mRNA 52.0 2E+02 0.0068 28.9 16.2 45 78-124 154-198 (661)
286 3eyy_A Putative iron uptake re 51.8 69 0.0024 24.6 7.9 63 451-515 8-70 (145)
287 1mzb_A Ferric uptake regulatio 51.1 78 0.0027 24.0 8.4 63 452-515 8-71 (136)
288 3bge_A Predicted ATPase; struc 51.0 1E+02 0.0034 25.2 9.1 38 299-336 19-56 (201)
289 4aez_C MAD3, mitotic spindle c 50.0 64 0.0022 27.0 7.6 66 444-513 131-197 (223)
290 2uwj_G Type III export protein 50.0 67 0.0023 22.9 7.8 77 92-176 21-97 (115)
291 1k1a_A B-cell lymphoma 3-encod 49.9 41 0.0014 28.2 7.1 86 83-172 12-101 (241)
292 2xig_A Ferric uptake regulatio 49.9 81 0.0028 24.4 8.0 64 451-515 16-79 (150)
293 3mv2_A Coatomer subunit alpha; 49.3 1.2E+02 0.0041 27.1 9.6 128 367-513 124-256 (325)
294 2p58_C Putative type III secre 48.8 71 0.0024 22.8 8.4 77 92-176 22-98 (116)
295 1wdy_A 2-5A-dependent ribonucl 48.7 38 0.0013 29.2 6.9 88 117-216 7-99 (285)
296 2zu6_B Programmed cell death p 48.0 1.4E+02 0.0048 26.5 10.2 69 220-289 169-239 (307)
297 3txn_A 26S proteasome regulato 46.9 1.8E+02 0.0061 27.0 20.0 27 113-139 20-46 (394)
298 2d2s_A Exocyst complex compone 46.3 1.4E+02 0.0046 25.4 9.4 89 118-209 24-118 (235)
299 3ctd_A Putative ATPase, AAA fa 45.7 1.3E+02 0.0044 24.9 10.5 56 299-354 47-107 (213)
300 2f6m_A Suppressor protein STP2 45.2 41 0.0014 21.7 4.4 48 79-127 4-51 (65)
301 2w57_A Ferric uptake regulatio 44.8 83 0.0029 24.4 7.4 63 451-514 6-69 (150)
302 3ltj_A Alpharep-4; protein eng 43.3 1.3E+02 0.0044 24.2 18.2 17 251-267 151-167 (201)
303 2ion_A PDCD4, programmed cell 42.7 1.1E+02 0.0039 23.7 7.7 22 152-173 14-35 (152)
304 3ltm_A Alpha-REP4; protein eng 41.5 1.4E+02 0.0048 24.2 18.6 110 215-336 93-202 (211)
305 4a1g_A Mitotic checkpoint seri 41.1 1.3E+02 0.0043 23.5 9.2 51 166-216 84-135 (152)
306 2fu4_A Ferric uptake regulatio 40.7 80 0.0027 21.1 7.9 63 451-514 6-69 (83)
307 3jxi_A Vanilloid receptor-rela 39.9 20 0.00068 30.8 3.4 57 83-139 8-73 (260)
308 2xig_A Ferric uptake regulatio 38.9 1.2E+02 0.004 23.5 7.4 46 186-231 30-75 (150)
309 4ets_A Ferric uptake regulatio 37.9 1.4E+02 0.0047 23.5 7.7 60 453-513 24-85 (162)
310 4b4t_S RPN3, 26S proteasome re 37.8 2.9E+02 0.0098 26.7 12.0 64 77-140 231-298 (523)
311 2nsz_A Programmed cell death p 37.5 1.3E+02 0.0044 22.6 9.1 23 152-174 12-34 (129)
312 3pvs_A Replication-associated 37.3 2.7E+02 0.0093 26.3 12.8 38 299-336 267-304 (447)
313 3eu9_A Huntingtin-interacting 36.1 35 0.0012 28.5 4.4 48 84-135 13-62 (240)
314 1ug3_A EIF4GI, eukaryotic prot 36.0 61 0.0021 29.4 6.1 23 221-243 15-37 (339)
315 2keb_A DNA polymerase subunit 35.3 1.2E+02 0.004 21.5 6.2 30 412-441 29-58 (101)
316 2fe3_A Peroxide operon regulat 35.0 1.2E+02 0.0041 23.2 6.8 43 188-230 27-69 (145)
317 3l6a_A Eukaryotic translation 34.6 2.7E+02 0.0092 25.4 12.5 26 219-244 14-39 (364)
318 2ijq_A Hypothetical protein; s 33.7 1.5E+02 0.0052 23.3 7.1 53 438-490 43-103 (161)
319 2ijq_A Hypothetical protein; s 31.8 1.6E+02 0.0055 23.1 6.9 53 88-140 43-103 (161)
320 3kea_A K1L; tropism, ANK repea 31.8 83 0.0029 27.4 6.2 45 120-168 36-80 (285)
321 1ug3_A EIF4GI, eukaryotic prot 31.5 1.5E+02 0.0053 26.7 8.0 63 80-143 14-77 (339)
322 3hra_A Ankyrin repeat family p 31.2 58 0.002 26.2 4.8 81 85-170 10-92 (201)
323 1mzb_A Ferric uptake regulatio 31.1 1.1E+02 0.0039 23.0 6.0 42 188-229 23-65 (136)
324 3eu9_A Huntingtin-interacting 31.0 32 0.0011 28.7 3.3 45 122-170 16-62 (240)
325 1oai_A Nuclear RNA export fact 30.9 36 0.0012 21.5 2.5 24 90-113 33-57 (59)
326 3ltj_A Alpharep-4; protein eng 29.3 2.2E+02 0.0075 22.8 19.6 78 251-336 120-197 (201)
327 1k1a_A B-cell lymphoma 3-encod 29.1 2.4E+02 0.0082 23.1 9.0 20 262-281 16-35 (241)
328 2wvi_A Mitotic checkpoint seri 27.9 2.2E+02 0.0077 22.4 9.4 51 166-216 79-130 (164)
329 2w57_A Ferric uptake regulatio 27.7 1.2E+02 0.0042 23.3 5.8 35 197-231 32-66 (150)
330 2o03_A Probable zinc uptake re 27.3 1.2E+02 0.0043 22.6 5.6 45 468-512 16-60 (131)
331 3kea_A K1L; tropism, ANK repea 27.0 1.1E+02 0.0037 26.6 6.1 143 83-241 34-182 (285)
332 2b7e_A PRE-mRNA processing pro 27.0 55 0.0019 20.6 2.8 29 94-122 3-31 (59)
333 3mwm_A ZUR, putative metal upt 26.5 1.2E+02 0.0041 23.0 5.4 47 467-513 18-64 (139)
334 1zl8_A LIN-7; heterodimer, alp 26.3 1.1E+02 0.0038 18.4 4.2 21 91-111 7-27 (53)
335 3eyy_A Putative iron uptake re 26.2 1.1E+02 0.0037 23.5 5.2 33 198-230 33-65 (145)
336 2rg8_A Programmed cell death p 25.4 45 0.0016 26.5 2.9 26 80-105 13-38 (165)
337 3t8k_A Uncharacterized protein 25.4 2.6E+02 0.0088 22.3 9.2 92 86-182 12-109 (186)
338 3l6a_A Eukaryotic translation 25.2 3.9E+02 0.013 24.3 14.6 62 79-145 14-81 (364)
339 2i2x_B MTAC, methyltransferase 24.4 66 0.0022 27.8 3.9 48 473-520 47-94 (258)
340 1n11_A Ankyrin; clathrin, BAND 24.0 1.4E+02 0.0048 27.8 6.7 203 83-310 17-232 (437)
341 3t8k_A Uncharacterized protein 23.8 1.7E+02 0.0057 23.4 6.2 25 192-216 45-69 (186)
342 3aji_A 26S proteasome non-ATPa 23.7 1.1E+02 0.0036 25.3 5.2 59 83-146 9-67 (231)
343 3dfg_A Xcrecx, regulatory prot 23.0 2.7E+02 0.0093 21.7 13.9 84 74-179 14-97 (162)
344 2r9g_A AAA ATPase, central reg 22.6 3.2E+02 0.011 22.4 10.2 17 91-107 28-44 (204)
345 2yru_A Steroid receptor RNA ac 22.5 1.6E+02 0.0054 21.8 5.0 42 99-140 48-89 (118)
346 3mwm_A ZUR, putative metal upt 21.9 2.3E+02 0.0078 21.4 6.2 46 361-406 17-62 (139)
347 2o03_A Probable zinc uptake re 21.8 2.4E+02 0.0083 20.9 6.3 45 362-406 15-59 (131)
348 1bpo_A Protein (clathrin); cla 21.8 3E+02 0.01 26.1 7.9 141 240-382 349-494 (494)
349 3pvs_A Replication-associated 21.2 5.2E+02 0.018 24.3 14.6 55 194-248 267-326 (447)
350 4fke_A Aminopeptidase N; zinc 21.1 7.4E+02 0.025 26.0 16.0 163 116-281 690-860 (909)
351 3hra_A Ankyrin repeat family p 21.0 66 0.0023 25.9 3.2 14 307-320 158-171 (201)
352 2p22_A Suppressor protein STP2 20.8 1.4E+02 0.0047 23.9 4.7 56 74-130 108-163 (174)
353 4gq2_M Nucleoporin NUP120; bet 20.6 7.7E+02 0.026 26.0 12.0 88 398-491 816-926 (950)
354 3lw5_I PSI-I, photosystem I re 20.6 31 0.0011 18.1 0.6 8 1-8 1-8 (30)
355 4ets_A Ferric uptake regulatio 20.5 3.1E+02 0.011 21.4 7.9 57 349-406 25-83 (162)
356 3d5l_A Regulatory protein RECX 20.1 3.8E+02 0.013 22.3 10.3 161 177-348 43-206 (221)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.6e-38 Score=324.83 Aligned_cols=431 Identities=10% Similarity=0.003 Sum_probs=369.3
Q ss_pred CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHH
Q 009556 73 EEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNI 152 (532)
Q Consensus 73 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ 152 (532)
+.++...|+.++..|.+.|++++|+.+|++|... .|+..++..++.+|.+.|++++|.++|+.+... +++..+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~ 155 (597)
T 2xpi_A 80 SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYL 155 (597)
T ss_dssp --CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHH
Confidence 3467889999999999999999999999999865 578899999999999999999999999988643 688999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHH-Hc--------------CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCH
Q 009556 153 LLRGFLKKGLLGLGSRLLMVME-DM--------------GICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNS 217 (532)
Q Consensus 153 li~~~~~~g~~~~A~~~~~~m~-~~--------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 217 (532)
++.+|.+.|++++|.++|+++. .. +.+.+..+|+.++.+|.+.|++++|.++|++|.+.+.. +.
T Consensus 156 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~ 234 (597)
T 2xpi_A 156 AAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CY 234 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH
T ss_pred HHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hh
Confidence 9999999999999999999532 21 22346889999999999999999999999999886432 33
Q ss_pred HhHHHH--------------------------------------HHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009556 218 FVYGKV--------------------------------------IGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSII 259 (532)
Q Consensus 218 ~~~~~l--------------------------------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 259 (532)
..+..+ +..|.+.|++++|.++|+++.+. +++..+++.++
T Consensus 235 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 312 (597)
T 2xpi_A 235 EAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKA 312 (597)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHH
T ss_pred HHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHH
Confidence 333222 44556778899999999998876 57899999999
Q ss_pred HHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 009556 260 DTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWD 339 (532)
Q Consensus 260 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 339 (532)
.+|.+.|++++|.++|+++.+.+.. +..+|+.++.++.+.|++++|.++++++.+.. +.+..++..++..|.+.|+++
T Consensus 313 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 390 (597)
T 2xpi_A 313 DTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKIS 390 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHH
Confidence 9999999999999999999876533 67789999999999999999999999998653 457888999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 009556 340 VIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLME 419 (532)
Q Consensus 340 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 419 (532)
+|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.
T Consensus 391 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (597)
T 2xpi_A 391 EARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSY 468 (597)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999998764 4568899999999999999999999999998764 4577889999999999999999999999998
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCcChHHHHHHHHHhCCC
Q 009556 420 PEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDI----GISPD--LVTYSTLMKAFIRAKKFHKVPEIYKQMESSGC 493 (532)
Q Consensus 420 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 493 (532)
+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.++++.+.+
T Consensus 469 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 546 (597)
T 2xpi_A 469 ALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS- 546 (597)
T ss_dssp HHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 764 457889999999999999999999999999765 66787 7899999999999999999999999998754
Q ss_pred CCCHHHHHHHHHHHHHHhhhhhc
Q 009556 494 TPDRKARQILQSALVVLEQRRCK 516 (532)
Q Consensus 494 ~p~~~t~~~l~~a~~~~~~~~~~ 516 (532)
+.+..++..+..++...++.+.+
T Consensus 547 p~~~~~~~~l~~~~~~~g~~~~A 569 (597)
T 2xpi_A 547 TNDANVHTAIALVYLHKKIPGLA 569 (597)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CCChHHHHHHHHHHHHhCCHHHH
Confidence 33788899999999888775544
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-36 Score=311.82 Aligned_cols=420 Identities=12% Similarity=0.036 Sum_probs=365.6
Q ss_pred CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH-C----------
Q 009556 73 EEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVC-F---------- 141 (532)
Q Consensus 73 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~---------- 141 (532)
..|+..+|+.++..|.+.|++++|+.+|+++... +++..+++.++.+|.+.|++++|.++|+++.. .
T Consensus 113 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 190 (597)
T 2xpi_A 113 ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLL 190 (597)
T ss_dssp HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------
T ss_pred hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccccccccccc
Confidence 3567789999999999999999999999998654 68899999999999999999999999995322 1
Q ss_pred ----CCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHH-----------------------------
Q 009556 142 ----GFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEIL----------------------------- 188 (532)
Q Consensus 142 ----g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l----------------------------- 188 (532)
|.+++..+|+.++.+|.+.|++++|.++|+++.+.+. .+...+..+
T Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 269 (597)
T 2xpi_A 191 MQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAA 269 (597)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHH
T ss_pred ccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHH
Confidence 2334688999999999999999999999999988653 233333333
Q ss_pred ---------HHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009556 189 ---------LDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSII 259 (532)
Q Consensus 189 ---------i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 259 (532)
+..|.+.|++++|.++|+++.+. +++..++..++..+.+.|++++|.++|+++.+.+ +.+..+++.++
T Consensus 270 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 346 (597)
T 2xpi_A 270 FLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHL 346 (597)
T ss_dssp HHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHH
Confidence 55566788999999999998876 5799999999999999999999999999999876 34778899999
Q ss_pred HHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 009556 260 DTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWD 339 (532)
Q Consensus 260 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 339 (532)
.+|.+.|++++|.++++++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+.. +.+..++..++..+.+.|+++
T Consensus 347 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 424 (597)
T 2xpi_A 347 ASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHD 424 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999998653 3478899999999999999999999999998753 346889999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 009556 340 VIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLME 419 (532)
Q Consensus 340 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 419 (532)
+|.++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.
T Consensus 425 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 502 (597)
T 2xpi_A 425 QAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNAL 502 (597)
T ss_dssp HHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999999875 5678899999999999999999999999998875 4578899999999999999999999999997
Q ss_pred cC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCC
Q 009556 420 PE----GIEPN--LVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGC 493 (532)
Q Consensus 420 ~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 493 (532)
+. +..|+ ..+|..++.+|.+.|++++|.++|+++.+.+ +.+..+|..+..+|.+.|++++|.+.++++.+ +
T Consensus 503 ~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~ 579 (597)
T 2xpi_A 503 LLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLA--I 579 (597)
T ss_dssp HHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred HhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh--c
Confidence 65 56777 7899999999999999999999999998864 34889999999999999999999999999998 5
Q ss_pred CCCH-HHHHHHHH
Q 009556 494 TPDR-KARQILQS 505 (532)
Q Consensus 494 ~p~~-~t~~~l~~ 505 (532)
.|+. ..+..+.+
T Consensus 580 ~p~~~~~~~~l~~ 592 (597)
T 2xpi_A 580 SPNEIMASDLLKR 592 (597)
T ss_dssp CTTCHHHHHHHHH
T ss_pred CCCChHHHHHHHH
Confidence 6654 44444433
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.98 E-value=3.4e-31 Score=260.84 Aligned_cols=211 Identities=15% Similarity=0.146 Sum_probs=119.3
Q ss_pred HHHHHHHHcCCCCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 009556 98 ALLAQMQALGFHPSSI-SYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDM 176 (532)
Q Consensus 98 ~~~~~m~~~~~~~~~~-~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 176 (532)
.+.+++.+++....+. .++.+|.+|++.|++++|+++|++|.+.|+.||..+||+||.+|++.+...++
T Consensus 11 ~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~---------- 80 (501)
T 4g26_A 11 NLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES---------- 80 (501)
T ss_dssp -------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS----------
T ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh----------
Confidence 3444444444433332 34555555555555555555555555555555555555555555544432110
Q ss_pred CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHH
Q 009556 177 GICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYN 256 (532)
Q Consensus 177 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 256 (532)
.+.+.+++|.++|++|...|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+||
T Consensus 81 ----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn 144 (501)
T 4g26_A 81 ----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYG 144 (501)
T ss_dssp ----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred ----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceeh
Confidence 0112245566666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 009556 257 SIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGE 334 (532)
Q Consensus 257 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 334 (532)
.+|.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.+++++|.+.|..|+..||+.++..++.
T Consensus 145 ~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 145 PALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 666666666666666666666666666666666666666666666666666666666666666666666666666554
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.98 E-value=1.4e-27 Score=231.15 Aligned_cols=383 Identities=14% Similarity=0.049 Sum_probs=295.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCC
Q 009556 83 SIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGL 162 (532)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 162 (532)
+...+.+.|++++|++.++++.+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..+...|.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 3556778899999999999988774 4556677778888889999999999999888765 5678899999999999999
Q ss_pred hhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHH
Q 009556 163 LGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEE 242 (532)
Q Consensus 163 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 242 (532)
+++|.+.|+++.+..+ .+..+|..+...+.+.|++++|.+.|+++.+.... +...+..+...+...|++++|.+.|++
T Consensus 83 ~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999999887542 45667889999999999999999999998876322 455667777888888999999999988
Q ss_pred HHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 009556 243 IREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDP 322 (532)
Q Consensus 243 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 322 (532)
+.+.. +.+..+|+.+...+.+.|++++|...|+++.+.+. .+...|..+...+...|++++|...+++..+.. +.+.
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 237 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCH
Confidence 88764 34677888888888888999999988888877543 256778888888888888888888888877653 2356
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009556 323 KIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAY 402 (532)
Q Consensus 323 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 402 (532)
.++..+...+.+.|++++|...++++.+.. +.+..++..+...+.+.|++++|.+.++++.+.. +.+..++..+...+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 777778888888888888888888887764 4456677777788888888888888888777664 45667777777777
Q ss_pred HhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009556 403 AQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAK 476 (532)
Q Consensus 403 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 476 (532)
...|++++|.+.++++.+.. +.+..++..+..++.+.|++++|.+.|+++.+.. +.+...|..+...+...|
T Consensus 316 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTC
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHcc
Confidence 77788888888877777653 4456677777777777777788877777777642 224555666665555544
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.98 E-value=3.7e-31 Score=260.61 Aligned_cols=188 Identities=16% Similarity=0.181 Sum_probs=158.3
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCC---------HHHHHHHHHHHHHCCCCCChH
Q 009556 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGR---------TLEADAIFQEMVCFGFNPKLR 148 (532)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~---------~~~A~~~~~~~~~~g~~~~~~ 148 (532)
..++.+|++|++.|++++|+++|++|.+.|++||..+||+||.+|++.+. +++|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 46889999999999999999999999999999999999999999997765 577888888888888888888
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHH
Q 009556 149 FYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYR 228 (532)
Q Consensus 149 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 228 (532)
||++||.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 009556 229 DNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKY 265 (532)
Q Consensus 229 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 265 (532)
+.|++++|.+++++|.+.+..|+..||+.++..|+..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 8888888888888888777778888887777777653
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=6.2e-27 Score=226.62 Aligned_cols=380 Identities=14% Similarity=0.052 Sum_probs=328.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC
Q 009556 118 LIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGR 197 (532)
Q Consensus 118 li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 197 (532)
+...+.+.|++++|.+.+..+.+.. +.+...+..+...+...|++++|...++...+... .+..+|..+...+.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p-~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCC
Confidence 3566778999999999999998765 45667788888999999999999999999887643 678899999999999999
Q ss_pred hHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 009556 198 LDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEK 277 (532)
Q Consensus 198 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 277 (532)
+++|.+.|+++.+... .+..++..+..++...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|++
T Consensus 83 ~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999999987632 256689999999999999999999999999875 33566788888999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCH
Q 009556 278 MQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIG 357 (532)
Q Consensus 278 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 357 (532)
+.+... .+..+|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...+.+..+.. +.+.
T Consensus 161 al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 237 (388)
T 1w3b_A 161 AIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred HHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCH
Confidence 987633 367889999999999999999999999999864 3357788899999999999999999999998875 4568
Q ss_pred hHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHH
Q 009556 358 AIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAF 437 (532)
Q Consensus 358 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 437 (532)
.++..+...|.+.|++++|.+.|+++.+.+ +.+..+|..+...+.+.|++++|.+.++++.+.. +.+..+++.+...+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 889999999999999999999999999865 3457789999999999999999999999998764 66889999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCC-HHHHHHHHHHHHH
Q 009556 438 GVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPD-RKARQILQSALVV 509 (532)
Q Consensus 438 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~l~~a~~~ 509 (532)
...|++++|.+.++++.+.. +.+..++..+..++.+.|++++|.+.++++.+ +.|+ ...+..+...+..
T Consensus 316 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~~~ 385 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKE 385 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHHHHH
Confidence 99999999999999998752 34678899999999999999999999999997 5664 4455555554443
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=4.3e-24 Score=214.68 Aligned_cols=414 Identities=10% Similarity=-0.012 Sum_probs=328.5
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHH
Q 009556 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (532)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (532)
...|-.....+.+.|++++|+..|+++.+.+ |+..+|..+..++...|++++|.+.++++.+.+ +.+..++..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 4456778888999999999999999999885 799999999999999999999999999999876 5677899999999
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-------------------------
Q 009556 157 FLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSK------------------------- 211 (532)
Q Consensus 157 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------------------------- 211 (532)
+.+.|++++|...|+++...+. ++......++..+........+.+.+..+...
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 9999999999999999998764 34444444444444333222222222111100
Q ss_pred ----------CC---------CcCHHhHHHHHHHHHc---CCChHHHHHHHHHHHH-----cCC--------CCCHHHHH
Q 009556 212 ----------GF---------QLNSFVYGKVIGLYRD---NGMWKKAVGIVEEIRE-----MGL--------SLDRQIYN 256 (532)
Q Consensus 212 ----------~~---------~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~ 256 (532)
.. +.+...+......+.. .|++++|...++++.+ ..- +.+...+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 00 1113344444444444 8999999999999988 311 22356788
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 009556 257 SIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELG 336 (532)
Q Consensus 257 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 336 (532)
.+...+...|++++|...|+++.+... +...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhC
Confidence 889999999999999999999987643 38888999999999999999999999998764 346678888999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009556 337 KWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQ 416 (532)
Q Consensus 337 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 416 (532)
++++|...++.+.+.. +.+...+..+...|...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.++
T Consensus 319 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp CTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999999875 4467788999999999999999999999998764 3356778899999999999999999999
Q ss_pred HhccCCC-CCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHH
Q 009556 417 LMEPEGI-EPN----LVMLNVLINAFGV---AGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQM 488 (532)
Q Consensus 417 ~m~~~~~-~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 488 (532)
++.+... .++ ...+..+...+.. .|++++|.+.++++.+.. +.+...+..+...+.+.|++++|.+.+++.
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 8875421 111 3488899999999 999999999999998753 346778899999999999999999999999
Q ss_pred HhCCCCCCHHHHHH
Q 009556 489 ESSGCTPDRKARQI 502 (532)
Q Consensus 489 ~~~g~~p~~~t~~~ 502 (532)
.+ +.|+......
T Consensus 476 ~~--~~~~~~~~~~ 487 (514)
T 2gw1_A 476 AD--LARTMEEKLQ 487 (514)
T ss_dssp HH--HCSSHHHHHH
T ss_pred HH--hccccHHHHH
Confidence 98 5676554433
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=4.2e-22 Score=196.66 Aligned_cols=315 Identities=10% Similarity=0.051 Sum_probs=183.5
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHH
Q 009556 75 FSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILL 154 (532)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li 154 (532)
.+...|..+...+.+.|++++|+.+|+++.+.. +.+..+|..+..++...|++++|.+.|+++.+.+ +.+..++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 345667777788888888888888888877663 4567777888888888888888888888887765 44567777778
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCcCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCC
Q 009556 155 RGFLKKGLLGLGSRLLMVMEDMGICRNQ---ETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNG 231 (532)
Q Consensus 155 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 231 (532)
.+|.+.|++++|.+.|+++.+... .+. ..+..+...+... .+..+...+...|
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~ 157 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGSG 157 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHcC
Confidence 888888888888888887776432 233 4555554442111 1112233445556
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009556 232 MWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFT 311 (532)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 311 (532)
++++|...++++.+.. +.+..++..+..+|.+.|++++|.+.|+++.+.. +.+..+|..+...|...|++++|+..|+
T Consensus 158 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 235 (450)
T 2y4t_A 158 DYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVR 235 (450)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6666666666665543 2355566666666666666666666666665432 1245666666666666666666666666
Q ss_pred HHHHCCCCCCHHHHHHH------------HHHHHccCCHHHHHHHHHHHHhcCCCCC----HhHHHHHHHHHHhcCCccc
Q 009556 312 QMQEQGFYPDPKIFITI------------ISCLGELGKWDVIKKNFENMKDRGHGKI----GAIYAILVDIYGQYGRFRD 375 (532)
Q Consensus 312 ~m~~~~~~~~~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~ 375 (532)
++.+.. +.+...+..+ ...+.+.|++++|...++.+.+.... + ...+..+..++.+.|++++
T Consensus 236 ~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~ 313 (450)
T 2y4t_A 236 ECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVE 313 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHH
Confidence 665432 1122222222 44445555555555555555443211 1 2234444555555555555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcc
Q 009556 376 PEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEP 420 (532)
Q Consensus 376 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 420 (532)
|...++.+.+.. +.+...|..+..+|...|++++|.+.++++.+
T Consensus 314 A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 314 AIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 555555544432 22344455555555555555555555555544
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=4.9e-22 Score=196.20 Aligned_cols=393 Identities=13% Similarity=0.066 Sum_probs=279.0
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHH
Q 009556 94 DEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVM 173 (532)
Q Consensus 94 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 173 (532)
..+...+.++.... +.+...+..+...+.+.|++++|+.+|+.+.+.. +.+..++..+..++...|++++|...|+++
T Consensus 9 ~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 9 SGVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34444455544432 4556677777777777788888888887777653 456677777777777777777777777777
Q ss_pred HHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCH---HhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC
Q 009556 174 EDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNS---FVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSL 250 (532)
Q Consensus 174 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 250 (532)
.+.+. .+..++..+...|.+.|++++|.+.|+++.+.... +. ..+..+...+..
T Consensus 87 l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~--------------------- 143 (450)
T 2y4t_A 87 IQLKM-DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEM--------------------- 143 (450)
T ss_dssp HHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHH---------------------
T ss_pred HhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHH---------------------
Confidence 76543 35667777777777777777777777777665221 22 333333333211
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009556 251 DRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIIS 330 (532)
Q Consensus 251 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 330 (532)
..+..+...+.+.|++++|...|+++.+... .+...+..+...|.+.|++++|++.|+++.+.. +.+..++..+..
T Consensus 144 --~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 219 (450)
T 2y4t_A 144 --QRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKIST 219 (450)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHH
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 1223345568889999999999999987533 378889999999999999999999999998753 446889999999
Q ss_pred HHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHH------------HHHHHhcCCcccHHHHHHHHHHcCCCCC----HHH
Q 009556 331 CLGELGKWDVIKKNFENMKDRGHGKIGAIYAIL------------VDIYGQYGRFRDPEECIAALKLEGLQPS----GSM 394 (532)
Q Consensus 331 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------i~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~ 394 (532)
.+...|++++|...++.+.+.. +.+...+..+ ...+.+.|++++|...|+.+.+.... + ...
T Consensus 220 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~ 297 (450)
T 2y4t_A 220 LYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRS 297 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHH
Confidence 9999999999999999998765 3445555555 88899999999999999999886422 2 347
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH--
Q 009556 395 FCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISP-DLVTYSTLMKA-- 471 (532)
Q Consensus 395 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~-- 471 (532)
+..+...+.+.|++++|.+.++++.+.. +.+...|..+..+|...|++++|.+.++++.+. .| +...+..+..+
T Consensus 298 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~ 374 (450)
T 2y4t_A 298 KERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLEKAQR 374 (450)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHHHHHH
Confidence 8888999999999999999999988753 457899999999999999999999999999885 34 45566666533
Q ss_pred ----------HHhcC-----CcChHHHHHHHH-HhC--CCCCC-------HHHHHHHHHHHHHHhhhhhccccc
Q 009556 472 ----------FIRAK-----KFHKVPEIYKQM-ESS--GCTPD-------RKARQILQSALVVLEQRRCKQRLD 520 (532)
Q Consensus 472 ----------~~~~g-----~~~~a~~~~~~m-~~~--g~~p~-------~~t~~~l~~a~~~~~~~~~~~~~~ 520 (532)
|...| +.+++.+.++++ .+. ...|+ ...+..+..++-.+++.+...+-|
T Consensus 375 ~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd 448 (450)
T 2y4t_A 375 LLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFD 448 (450)
T ss_dssp HHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC----
T ss_pred HhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhcc
Confidence 33344 556778888863 332 11122 236777888888877776655443
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=6.5e-22 Score=199.99 Aligned_cols=402 Identities=11% Similarity=0.052 Sum_probs=313.8
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHH
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (532)
....|..+...+.+.|++++|++.|+++.+.. +.+..+|..+..++...|++++|++.|+++.+.+ +.+..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 35667888999999999999999999999875 5678999999999999999999999999999876 567889999999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCcCHHh----------
Q 009556 156 GFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSK------GFQLNSFV---------- 219 (532)
Q Consensus 156 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~~~~~~---------- 219 (532)
++...|++++|.+.|+.+... |+ .....+..+...+...+|...++.+... ...|+...
T Consensus 102 ~~~~~g~~~~A~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLSLN---GD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHHcCCHHHHHHHHHHHhcC---CC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 999999999999999744221 22 2222344555556667788888877442 11222221
Q ss_pred --------------------HHHHHHHHHc--------CCChHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHHhc
Q 009556 220 --------------------YGKVIGLYRD--------NGMWKKAVGIVEEIREMGLSLD-------RQIYNSIIDTFGK 264 (532)
Q Consensus 220 --------------------~~~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~li~~~~~ 264 (532)
...+...+.. .|++++|..+++++.+.... + ..++..+...+..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 177 HLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHh
Confidence 1111112111 24788999999999876422 2 2356677788889
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 009556 265 YGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKN 344 (532)
Q Consensus 265 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 344 (532)
.|++++|...|++..+. .|+...|..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...
T Consensus 256 ~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp TTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 99999999999999885 4567888899999999999999999999998764 34678899999999999999999999
Q ss_pred HHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCC--
Q 009556 345 FENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEG-- 422 (532)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-- 422 (532)
++.+.+.. +.+...+..+...|...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+..
T Consensus 333 ~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 333 FQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 99999875 4457788999999999999999999999998875 3456788899999999999999999999886532
Q ss_pred ---CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHH
Q 009556 423 ---IEPNLVMLNVLINAFGVA----------GKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQME 489 (532)
Q Consensus 423 ---~~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 489 (532)
.......+..+...+... |++++|...|+++.+.. +.+...+..+...+.+.|++++|.+.+++..
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 489 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSA 489 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 112233345556777888 99999999999998763 3467789999999999999999999999999
Q ss_pred hC
Q 009556 490 SS 491 (532)
Q Consensus 490 ~~ 491 (532)
+.
T Consensus 490 ~~ 491 (537)
T 3fp2_A 490 IL 491 (537)
T ss_dssp HH
T ss_pred Hh
Confidence 84
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2.6e-21 Score=194.32 Aligned_cols=375 Identities=9% Similarity=-0.038 Sum_probs=299.7
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHH
Q 009556 75 FSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILL 154 (532)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li 154 (532)
|+...|..+...|.+.|++++|++.|+++.+.+ +.+..+|..+..++...|++++|...|+.+.+.+ +++......++
T Consensus 37 p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 114 (514)
T 2gw1_A 37 EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNG-DFNDASIEPML 114 (514)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHH
T ss_pred ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHH
Confidence 578899999999999999999999999999875 5677899999999999999999999999999876 34555555555
Q ss_pred HHHHhcCChhHHHHHHHHHHH-----------------------------------cCC---------CcCHHHHHHHHH
Q 009556 155 RGFLKKGLLGLGSRLLMVMED-----------------------------------MGI---------CRNQETYEILLD 190 (532)
Q Consensus 155 ~~~~~~g~~~~A~~~~~~m~~-----------------------------------~~~---------~~~~~~~~~li~ 190 (532)
..+.+......+.+.+..+.. ... +.+...+.....
T Consensus 115 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (514)
T 2gw1_A 115 ERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGL 194 (514)
T ss_dssp HHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHH
Confidence 544443322222222211110 000 112444445555
Q ss_pred HHHh---cCChHHHHHHHHHHHH-----CCC--------CcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHH
Q 009556 191 YHVN---AGRLDDTWLIINEMRS-----KGF--------QLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQI 254 (532)
Q Consensus 191 ~~~~---~~~~~~a~~~~~~m~~-----~~~--------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 254 (532)
.+.. .|++++|...|+++.+ ..- +.+..++..+...+...|++++|...++++.+.... ...
T Consensus 195 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~ 272 (514)
T 2gw1_A 195 SNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNS 272 (514)
T ss_dssp HHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHH
T ss_pred HHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHH
Confidence 5554 8999999999999987 311 123567788889999999999999999999987543 888
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 009556 255 YNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGE 334 (532)
Q Consensus 255 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 334 (532)
+..+...+...|++++|...++++.+... .+...+..+...+...|++++|...+++..+.. +.+...+..+...+..
T Consensus 273 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 350 (514)
T 2gw1_A 273 YIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYR 350 (514)
T ss_dssp HHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHH
Confidence 99999999999999999999999987643 366788999999999999999999999998864 3356788889999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHh---cC
Q 009556 335 LGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQ-PS----GSMFCILANAYAQ---QG 406 (532)
Q Consensus 335 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~---~g 406 (532)
.|++++|...++.+.+.. +.+...+..+...|...|++++|...++.+.+.... ++ ...+..+...+.. .|
T Consensus 351 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 429 (514)
T 2gw1_A 351 ENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE 429 (514)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTT
T ss_pred cCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcC
Confidence 999999999999998765 456788899999999999999999999998764321 11 3378899999999 99
Q ss_pred CHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009556 407 LCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIG 457 (532)
Q Consensus 407 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 457 (532)
++++|.+.++.+.+.. +.+..++..+...|...|++++|.+.|+++.+..
T Consensus 430 ~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 430 NFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 9999999999988764 4577888999999999999999999999998853
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.88 E-value=2.1e-19 Score=181.50 Aligned_cols=389 Identities=12% Similarity=0.111 Sum_probs=298.4
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 009556 112 SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDY 191 (532)
Q Consensus 112 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 191 (532)
...+..+...+.+.|++++|++.|+++.+.. +.+...+..+..+|.+.|++++|.+.|+++.+.+. .+..++..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHH
Confidence 4567888899999999999999999999876 56889999999999999999999999999998754 577899999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHc------CCCCCHH------------
Q 009556 192 HVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREM------GLSLDRQ------------ 253 (532)
Q Consensus 192 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~------------ 253 (532)
+...|++++|...|+.+ .. .|+. ....+..+...+...+|...++.+... ...|+..
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHHHH-hc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 99999999999999643 32 2221 122233444455557777777777542 1112211
Q ss_pred ------------------HHHHHHHHHhcc--------CCHHHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHHc
Q 009556 254 ------------------IYNSIIDTFGKY--------GELVEALEVFEKMQQESIRPD-------IVTWNSLIRWHCKA 300 (532)
Q Consensus 254 ------------------~~~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~p~-------~~~~~~li~~~~~~ 300 (532)
....+...+... |++++|..+|+++.+.... + ..++..+...+...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhc
Confidence 222233332222 4789999999998875332 2 23466777888999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHH
Q 009556 301 GDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECI 380 (532)
Q Consensus 301 g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 380 (532)
|++++|.+.+++..+. .|+...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...+
T Consensus 257 ~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 257 NNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp TCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 9999999999999986 4568888889999999999999999999999876 556888999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---
Q 009556 381 AALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIG--- 457 (532)
Q Consensus 381 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--- 457 (532)
+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.|+++.+..
T Consensus 334 ~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 411 (537)
T 3fp2_A 334 QKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ 411 (537)
T ss_dssp HHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc
Confidence 9998875 3355778899999999999999999999998764 4567789999999999999999999999987542
Q ss_pred --CCCCHHHHHHHHHHHHhc----------CCcChHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHHhhhhh
Q 009556 458 --ISPDLVTYSTLMKAFIRA----------KKFHKVPEIYKQMESSGCTP-DRKARQILQSALVVLEQRRC 515 (532)
Q Consensus 458 --~~p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~g~~p-~~~t~~~l~~a~~~~~~~~~ 515 (532)
.......+..+...+.+. |++++|...++++.+. .| +...+..+...+...++.+.
T Consensus 412 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~g~~~~ 480 (537)
T 3fp2_A 412 EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPRSEQAKIGLAQLKLQMEKIDE 480 (537)
T ss_dssp SSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHH
Confidence 111222344556677777 9999999999999974 34 56677788888877766444
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=1.6e-18 Score=165.13 Aligned_cols=333 Identities=11% Similarity=0.050 Sum_probs=210.0
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHH
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (532)
|+..|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 34567788888899999999999999988774 5567888889999999999999999999988764 446788888889
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCC--cCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCCh
Q 009556 156 GFLKKGLLGLGSRLLMVMEDMGIC--RNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMW 233 (532)
Q Consensus 156 ~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 233 (532)
.+...|++++|...|+++.+.... .+...+..+...+. ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 999999999999999988875320 12333333321100 01122233444555555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009556 234 KKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQM 313 (532)
Q Consensus 234 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 313 (532)
++|.+.++++.+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++.
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555555443 2344555555555555555555555555555442 224455555555555666666666666555
Q ss_pred HHCCCCCCHHHHH------------HHHHHHHccCCHHHHHHHHHHHHhcCCCCCH----hHHHHHHHHHHhcCCcccHH
Q 009556 314 QEQGFYPDPKIFI------------TIISCLGELGKWDVIKKNFENMKDRGHGKIG----AIYAILVDIYGQYGRFRDPE 377 (532)
Q Consensus 314 ~~~~~~~~~~~~~------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~ 377 (532)
.+.. +.+...+. .+...+.+.|++++|...++.+.+.... +. ..+..+...+.+.|++++|.
T Consensus 215 ~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 215 LKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHH
Confidence 5432 11222211 2244566777777777777777665422 22 22445667777777777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Q 009556 378 ECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGV 439 (532)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 439 (532)
..++...+.. +.+...+..+...+...|++++|.+.++++.+.. +-+...+..+..+...
T Consensus 293 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 293 RICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 7777777653 3356677777777888888888888888777653 3345555555555443
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=3.7e-18 Score=162.65 Aligned_cols=334 Identities=13% Similarity=0.045 Sum_probs=255.1
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 009556 111 SSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLD 190 (532)
Q Consensus 111 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 190 (532)
|+..+..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++|...|+++.+... .+...|..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHHHH
Confidence 34567777788888888888888888887754 45677788888888888888888888888776542 35667777888
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCC--cCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 009556 191 YHVNAGRLDDTWLIINEMRSKGFQ--LNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGEL 268 (532)
Q Consensus 191 ~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 268 (532)
.+...|++++|...|++..+.... .+...+..+..... ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 888888888888888887765320 12222222221100 11233456788899999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 009556 269 VEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENM 348 (532)
Q Consensus 269 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 348 (532)
++|.+.++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++..
T Consensus 137 ~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999987643 377889999999999999999999999998763 457888999999999999999999999999
Q ss_pred HhcCCCCCHhHHH------------HHHHHHHhcCCcccHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHH
Q 009556 349 KDRGHGKIGAIYA------------ILVDIYGQYGRFRDPEECIAALKLEGLQPSG----SMFCILANAYAQQGLCEQTV 412 (532)
Q Consensus 349 ~~~~~~~~~~~~~------------~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~ 412 (532)
.+.. +.+...+. .+...+.+.|++++|...++.+.+.... +. ..+..+...+...|++++|.
T Consensus 215 ~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 215 LKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHH
Confidence 8875 33344333 2367799999999999999999886533 33 23556788999999999999
Q ss_pred HHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009556 413 KVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRA 475 (532)
Q Consensus 413 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 475 (532)
+.+++..+.. +.+..++..+...+...|++++|.+.|+++.+.. +-+...+..+..+....
T Consensus 293 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 293 RICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHH
Confidence 9999998763 4578899999999999999999999999999863 22466677776665543
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.86 E-value=1.3e-16 Score=159.01 Aligned_cols=353 Identities=12% Similarity=0.043 Sum_probs=270.9
Q ss_pred ChhhHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCh
Q 009556 76 SGNSYNKSIQYCCK----LGDIDEAMALLAQMQALGFHPSSISYASLIEALAS----VGRTLEADAIFQEMVCFGFNPKL 147 (532)
Q Consensus 76 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~g~~~~~ 147 (532)
++..+..+-..|.. .+++++|+..|++..+.| ++..+..+...|.. .++.++|.++|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 45556667777777 788999999998888764 56777888888888 888999999998888754 55
Q ss_pred HhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCcCHHh
Q 009556 148 RFYNILLRGFLK----KGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVN----AGRLDDTWLIINEMRSKGFQLNSFV 219 (532)
Q Consensus 148 ~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~ 219 (532)
..+..|...|.. .+++++|.+.|++..+.| +...+..|...|.. .++.++|.+.|++..+.| +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 667777788877 778889999998888764 56677777777776 778888988888888764 6677
Q ss_pred HHHHHHHHHc----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 009556 220 YGKVIGLYRD----NGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGK----YGELVEALEVFEKMQQESIRPDIVTWN 291 (532)
Q Consensus 220 ~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~ 291 (532)
+..+...|.. .++.++|.++|++..+.+ +...+..+...|.. .++.++|..+|++..+.+ +...+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 259 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF 259 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 7777777777 788888888888888765 56677777777775 778888888888887753 456666
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-----CCHHHHHHHHHHHHhcCCCCCHhHHHH
Q 009556 292 SLIRWHCK----AGDVAKALELFTQMQEQGFYPDPKIFITIISCLGEL-----GKWDVIKKNFENMKDRGHGKIGAIYAI 362 (532)
Q Consensus 292 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ 362 (532)
.+...|.. .+++++|+++|++..+.| +...+..+...+... ++.++|...+++..+.+ +...+..
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 333 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQAN 333 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHH
Confidence 77777777 788888888888887654 455666666667666 78888888888888765 3556667
Q ss_pred HHHHHHhcC---CcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhccCCCCCCHHHHHHHHH
Q 009556 363 LVDIYGQYG---RFRDPEECIAALKLEGLQPSGSMFCILANAYAQ----QGLCEQTVKVLQLMEPEGIEPNLVMLNVLIN 435 (532)
Q Consensus 363 li~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 435 (532)
+...|...| +.++|.+.|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..|..
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~ 407 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGE 407 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 777776655 6778888888887753 45677777788877 788888888888887754 5667777888
Q ss_pred HHHh----cCCHHHHHHHHHHHHHCCC
Q 009556 436 AFGV----AGKYKEALSVYHLMKDIGI 458 (532)
Q Consensus 436 ~~~~----~g~~~~A~~~~~~m~~~~~ 458 (532)
.|.. .+++++|...|++..+.+.
T Consensus 408 ~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 408 IYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 8877 7888888888888877653
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.85 E-value=1.8e-16 Score=157.88 Aligned_cols=366 Identities=11% Similarity=0.005 Sum_probs=309.5
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHh----cCChhHHH
Q 009556 96 AMALLAQMQALGFHPSSISYASLIEALAS----VGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLK----KGLLGLGS 167 (532)
Q Consensus 96 A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~ 167 (532)
+++.+....+. .++..+..+...+.. .+++++|.+.|++..+.| +...+..|...|.. .++.++|.
T Consensus 26 ~~~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 26 NLEQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 35555555554 477788888888887 899999999999999864 56788888999998 89999999
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHc----CCChHHHHHH
Q 009556 168 RLLMVMEDMGICRNQETYEILLDYHVN----AGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRD----NGMWKKAVGI 239 (532)
Q Consensus 168 ~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~ 239 (532)
+.|++..+.| +...+..|...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|.+.
T Consensus 100 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 173 (490)
T 2xm6_A 100 IWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREW 173 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9999998864 66777888888888 789999999999998876 56778888888887 7899999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHH
Q 009556 240 VEEIREMGLSLDRQIYNSIIDTFGK----YGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCK----AGDVAKALELFT 311 (532)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~ 311 (532)
|++..+.+ +...+..+...|.. .++.++|.+.|++..+.+ +...+..+...|.. .+++++|.++|+
T Consensus 174 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~ 247 (490)
T 2xm6_A 174 YSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFS 247 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 99999875 78888889999987 899999999999998864 66778888888886 789999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhc-----CCcccHHHHHHH
Q 009556 312 QMQEQGFYPDPKIFITIISCLGE----LGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQY-----GRFRDPEECIAA 382 (532)
Q Consensus 312 ~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~ 382 (532)
+..+.| +...+..+...+.. .++.++|...++...+.+ +...+..+...|... ++.++|...+++
T Consensus 248 ~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~ 321 (490)
T 2xm6_A 248 QSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTK 321 (490)
T ss_dssp HHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHH
Confidence 998764 45666677777776 889999999999998765 466777888888887 899999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 009556 383 LKLEGLQPSGSMFCILANAYAQQG---LCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGV----AGKYKEALSVYHLMKD 455 (532)
Q Consensus 383 ~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~ 455 (532)
..+.+ +...+..+...|...| +.++|.+.|++..+.| +...+..+...|.. .+++++|.+.|++..+
T Consensus 322 a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 322 SAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 98865 4567777888888766 7899999999998764 67888899999998 8999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHh----cCCcChHHHHHHHHHhCCCC
Q 009556 456 IGISPDLVTYSTLMKAFIR----AKKFHKVPEIYKQMESSGCT 494 (532)
Q Consensus 456 ~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~~ 494 (532)
.| +...+..|...|.+ .+++++|.+.|++..+.|..
T Consensus 396 ~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 396 QG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 75 57788889999988 89999999999999987643
No 17
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.84 E-value=5.6e-17 Score=163.23 Aligned_cols=407 Identities=9% Similarity=0.055 Sum_probs=296.3
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHH
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (532)
+...|..++. +.+.|++++|..+|+++.+.. +.+...|...+..+.+.|++++|..+|+++.+.. |+...|...+.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 5678999998 478999999999999999873 6678889999999999999999999999999764 68778877775
Q ss_pred HH-HhcCChhHHHH----HHHHHHHc-CCCc-CHHHHHHHHHHHHh---------cCChHHHHHHHHHHHHCCCCcCHHh
Q 009556 156 GF-LKKGLLGLGSR----LLMVMEDM-GICR-NQETYEILLDYHVN---------AGRLDDTWLIINEMRSKGFQLNSFV 219 (532)
Q Consensus 156 ~~-~~~g~~~~A~~----~~~~m~~~-~~~~-~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~~~~~~~~~ 219 (532)
.. ...|+.+.|.+ +|+..... |..| +...|...+....+ .|+++.|..+|++..+.........
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 33 45688877765 77766543 4433 56688888877665 6889999999999988321111233
Q ss_pred HHHHHHHH-------------HcCCChHHHHHHHHHHH------HcC---CCCC--------HHHHHHHHHHHhcc----
Q 009556 220 YGKVIGLY-------------RDNGMWKKAVGIVEEIR------EMG---LSLD--------RQIYNSIIDTFGKY---- 265 (532)
Q Consensus 220 ~~~ll~~~-------------~~~~~~~~a~~~~~~~~------~~~---~~~~--------~~~~~~li~~~~~~---- 265 (532)
|....... ...++++.|..++.+.. +.. ++|+ ...|...+......
T Consensus 168 ~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~ 247 (530)
T 2ooe_A 168 WRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRT 247 (530)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccC
Confidence 33322211 12345677777766532 211 2333 24555555433221
Q ss_pred CCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHHCCCCCCHHHHHH
Q 009556 266 GEL----VEALEVFEKMQQESIRPDIVTWNSLIRWHCK-------AGDVA-------KALELFTQMQEQGFYPDPKIFIT 327 (532)
Q Consensus 266 g~~----~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~~~~~~~~~~~~ 327 (532)
++. +.|..+|++..... +.+...|..++..+.+ .|+++ +|..++++..+.-.+.+...+..
T Consensus 248 ~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~ 326 (530)
T 2ooe_A 248 EDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFA 326 (530)
T ss_dssp SCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHH
Confidence 232 46778888877652 2367788888887775 68877 89999999886322345788888
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCC-HhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhc
Q 009556 328 IISCLGELGKWDVIKKNFENMKDRGHGKI-GAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANA-YAQQ 405 (532)
Q Consensus 328 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~ 405 (532)
++..+.+.|++++|..+|+++.+.. +.+ ...|..++..+.+.|+.++|.++|++..+... .+...|...+.. +...
T Consensus 327 ~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~ 404 (530)
T 2ooe_A 327 YADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCS 404 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHc
Confidence 8889999999999999999999864 223 35888888988899999999999999987532 222333322222 3468
Q ss_pred CCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC--HHHHHHHHHHHHhcCCcChHH
Q 009556 406 GLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGI-SPD--LVTYSTLMKAFIRAKKFHKVP 482 (532)
Q Consensus 406 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~--~~~~~~l~~~~~~~g~~~~a~ 482 (532)
|+.++|.++|+...+.. +.+...|..++..+.+.|+.++|..+|++....+. .|+ ...|...+......|+.+.+.
T Consensus 405 ~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~ 483 (530)
T 2ooe_A 405 KDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 483 (530)
T ss_dssp CCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHH
T ss_pred CChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999887753 34678899999999999999999999999987632 232 447888888888899999999
Q ss_pred HHHHHHHh
Q 009556 483 EIYKQMES 490 (532)
Q Consensus 483 ~~~~~m~~ 490 (532)
++++++.+
T Consensus 484 ~~~~r~~~ 491 (530)
T 2ooe_A 484 KVEKRRFT 491 (530)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999876
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=7.1e-18 Score=158.77 Aligned_cols=292 Identities=11% Similarity=-0.068 Sum_probs=224.1
Q ss_pred CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHH
Q 009556 74 EFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNIL 153 (532)
Q Consensus 74 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~l 153 (532)
..+...+..+...+...|++++|+++|+++.+.. +.+...+..++..+...|++++|..+++++.+.. +.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 3455567788888899999999999999988775 4566677788888899999999999999998765 4567888889
Q ss_pred HHHHHhcC-ChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCC
Q 009556 154 LRGFLKKG-LLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGM 232 (532)
Q Consensus 154 i~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 232 (532)
...+...| ++++|.+.|++..+... .+...|..+...+...|++++|.+.+++..+.... +...+..+...+...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhh
Confidence 99999999 89999999999887643 45678888889999999999999999988876432 45666678888888888
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHHcCCHH
Q 009556 233 WKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQES--------IRPDIVTWNSLIRWHCKAGDVA 304 (532)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------~~p~~~~~~~li~~~~~~g~~~ 304 (532)
+++|.+.++++.+.. +.+...+..+...+...|++++|...+++..+.. .+.....+..+...+...|+++
T Consensus 175 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 888888888888764 3467778888888888888888888888776531 1233567777888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHH-HhcCC
Q 009556 305 KALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIY-GQYGR 372 (532)
Q Consensus 305 ~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~ 372 (532)
+|.+.+++..+.. +.+...+..+...+.+.|++++|...++++.+.. +.+...+..+..++ ...|+
T Consensus 254 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 254 EALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCc
Confidence 8888888877653 2355667777777777888888888877776654 34566666666666 33443
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=5.6e-18 Score=159.50 Aligned_cols=301 Identities=9% Similarity=-0.048 Sum_probs=172.9
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHH
Q 009556 109 HPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEIL 188 (532)
Q Consensus 109 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 188 (532)
+.+...+..+...+...|++++|.++|+++.+.. +.+...+..++..+...|++++|...++++.+... .+...|..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHH
Confidence 3455566666777777777777777777776654 34455566666666777777777777777666432 345566666
Q ss_pred HHHHHhcC-ChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 009556 189 LDYHVNAG-RLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGE 267 (532)
Q Consensus 189 i~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 267 (532)
...+...| ++++|.+.|++..+.... +...+..+...+...|++++|.+.++++.+... .+...+..+...|...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhh
Confidence 66666666 666677666666654321 344555566666666666666666666655432 233444445555555555
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 009556 268 LVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFEN 347 (532)
Q Consensus 268 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 347 (532)
+++|.+.+++..+... .+...+..+...+...|++++|...+++..+..... +.
T Consensus 175 ~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~---------- 228 (330)
T 3hym_B 175 SKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAI---------------GN---------- 228 (330)
T ss_dssp HHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTT---------------SC----------
T ss_pred HHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhc---------------cc----------
Confidence 5555555555554322 234455555555555555555555555544320000 00
Q ss_pred HHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCH
Q 009556 348 MKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNL 427 (532)
Q Consensus 348 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 427 (532)
....+....++..+...|...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+.
T Consensus 229 --~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~ 304 (330)
T 3hym_B 229 --EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDT 304 (330)
T ss_dssp --SCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCH
T ss_pred --cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCch
Confidence 00012234556666666666666666666666666543 2345566677777777777777777777776653 3355
Q ss_pred HHHHHHHHHH-HhcCCH
Q 009556 428 VMLNVLINAF-GVAGKY 443 (532)
Q Consensus 428 ~~~~~li~~~-~~~g~~ 443 (532)
..+..+..++ ...|+.
T Consensus 305 ~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 305 FSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHHHhCch
Confidence 6666666666 344443
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=1e-17 Score=160.43 Aligned_cols=259 Identities=12% Similarity=0.042 Sum_probs=155.5
Q ss_pred HHHcCChHHHHH-HHHHHHHcCC-CC--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCC
Q 009556 87 CCKLGDIDEAMA-LLAQMQALGF-HP--SSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGL 162 (532)
Q Consensus 87 ~~~~g~~~~A~~-~~~~m~~~~~-~~--~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 162 (532)
+...|++++|++ .|++...... .| +...+..+...+...|++++|...|+++.+.. +.+..++..+...+.+.|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 344578888887 7776554321 11 34567788888888899999999998888765 5567788888888888899
Q ss_pred hhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHH---------------HHHHH
Q 009556 163 LGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGK---------------VIGLY 227 (532)
Q Consensus 163 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~---------------ll~~~ 227 (532)
+++|.+.|+++.+... .+..++..+...+...|++++|.+.++++...... +...+.. .+..+
T Consensus 114 ~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 9999988888887653 46778888888888888999998888888876432 2222211 12222
Q ss_pred HcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 009556 228 RDNGMWKKAVGIVEEIREMGLSL-DRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKA 306 (532)
Q Consensus 228 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 306 (532)
...|++++|...++++.+..... +..++..+...|.+.|++++|...|+++.+... .+...|..+...+...|++++|
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHcCCHHHH
Confidence 25556666666666655543211 355555555566666666666666655554321 2345555555555556666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 009556 307 LELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKD 350 (532)
Q Consensus 307 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 350 (532)
.+.++++.+.. +.+...+..+...+.+.|++++|...++.+.+
T Consensus 271 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 271 VAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALN 313 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66665555432 22344555555555555555555555555543
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.81 E-value=6.8e-16 Score=155.31 Aligned_cols=403 Identities=10% Similarity=0.069 Sum_probs=290.1
Q ss_pred HHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 009556 100 LAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGIC 179 (532)
Q Consensus 100 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 179 (532)
|++..+.. +-+...|..++.. .+.|++++|..+|+++.+.. +.+...|..++..+.+.|+++.|.++|++.....
T Consensus 2 le~al~~~-P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-- 76 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-- 76 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--
T ss_pred hhhHhhhC-CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Confidence 44544443 5578899999984 78999999999999999764 5677889999999999999999999999998854
Q ss_pred cCHHHHHHHHHHH-HhcCChHHHHH----HHHHHHH-CCCCc-CHHhHHHHHHHHHc---------CCChHHHHHHHHHH
Q 009556 180 RNQETYEILLDYH-VNAGRLDDTWL----IINEMRS-KGFQL-NSFVYGKVIGLYRD---------NGMWKKAVGIVEEI 243 (532)
Q Consensus 180 ~~~~~~~~li~~~-~~~~~~~~a~~----~~~~m~~-~~~~~-~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~ 243 (532)
|+...|..++... ...|+.++|.+ +|++... .|..| +...|...+..... .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 6777888887644 45677776665 7776654 35444 45677777766554 68899999999999
Q ss_pred HHcCCCCCHHHHHHHHHHH-------------hccCCHHHHHHHHHHHH------hCC---CCCC--------HHHHHHH
Q 009556 244 REMGLSLDRQIYNSIIDTF-------------GKYGELVEALEVFEKMQ------QES---IRPD--------IVTWNSL 293 (532)
Q Consensus 244 ~~~~~~~~~~~~~~li~~~-------------~~~g~~~~A~~~~~~m~------~~~---~~p~--------~~~~~~l 293 (532)
++.........|....... .+.++++.|..++..+. +.. +.|+ ...|...
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred HhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 8832111123444332211 13456777877776632 221 2343 2456555
Q ss_pred HHHHHHc----CCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-------cCCHH-------HHHHHHHHHHhc
Q 009556 294 IRWHCKA----GDV----AKALELFTQMQEQGFYPDPKIFITIISCLGE-------LGKWD-------VIKKNFENMKDR 351 (532)
Q Consensus 294 i~~~~~~----g~~----~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~ 351 (532)
+...... ++. +++..+|++..... +-+...|......+.+ .|+++ +|..++++..+.
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~ 315 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 315 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH
Confidence 5433332 232 47788999988752 3467777777777765 78887 899999999874
Q ss_pred CCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHH
Q 009556 352 GHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPS--GSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVM 429 (532)
Q Consensus 352 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 429 (532)
-.+.+...|..++..+.+.|++++|..+|+++.+. .|+ ...|..++..+.+.|++++|.++|++..+.. +.+...
T Consensus 316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~ 392 (530)
T 2ooe_A 316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHV 392 (530)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHH
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHH
Confidence 34567889999999999999999999999999985 343 3578889999999999999999999998753 223333
Q ss_pred HHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCC-CCCC--HHHHHHHHH
Q 009556 430 LNVLINA-FGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSG-CTPD--RKARQILQS 505 (532)
Q Consensus 430 ~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g-~~p~--~~t~~~l~~ 505 (532)
|...+.. +...|++++|..+|++..+.. +.+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...++
T Consensus 393 ~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~ 471 (530)
T 2ooe_A 393 YVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLA 471 (530)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 3333222 346899999999999998753 3367889999999999999999999999999863 3343 335555555
Q ss_pred HHHHHhh
Q 009556 506 ALVVLEQ 512 (532)
Q Consensus 506 a~~~~~~ 512 (532)
.....|+
T Consensus 472 ~e~~~G~ 478 (530)
T 2ooe_A 472 FESNIGD 478 (530)
T ss_dssp HHHHSSC
T ss_pred HHHHcCC
Confidence 5554444
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.80 E-value=2.4e-17 Score=157.71 Aligned_cols=267 Identities=11% Similarity=0.009 Sum_probs=188.2
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHH
Q 009556 75 FSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILL 154 (532)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li 154 (532)
.+...|..+...+.+.|++++|++.|+++.+.. +.+..+|..+...+...|++++|++.|+++.+.. +.+..++..+.
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 355668889999999999999999999998875 5678899999999999999999999999998865 45688899999
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCcCH----------HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-cCHHhHHHH
Q 009556 155 RGFLKKGLLGLGSRLLMVMEDMGICRNQ----------ETYEILLDYHVNAGRLDDTWLIINEMRSKGFQ-LNSFVYGKV 223 (532)
Q Consensus 155 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~----------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~l 223 (532)
..|...|++++|.+.|+++.+... .+. ..+..+...+...|++++|.+.|+++.+.... ++..++..+
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNP-KYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCH-HHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCc-cchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 999999999999999999887432 111 12233466777777888888888877765332 146677777
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 009556 224 IGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDV 303 (532)
Q Consensus 224 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 303 (532)
...+...|++++|.+.++++.+.. +.+..+|+.+...|.+.|++++|...|++..+... .+..+|..+...|.+.|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP-GFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCH
Confidence 777777777777777777777654 33566777777777777777777777777766422 2466677777777777777
Q ss_pred HHHHHHHHHHHHCCCC-----------CCHHHHHHHHHHHHccCCHHHHHHHHH
Q 009556 304 AKALELFTQMQEQGFY-----------PDPKIFITIISCLGELGKWDVIKKNFE 346 (532)
Q Consensus 304 ~~A~~~~~~m~~~~~~-----------~~~~~~~~ll~~~~~~~~~~~a~~~~~ 346 (532)
++|...|+++.+.... .+...+..+..++...|+.+.+..+..
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 7777777776643100 023445555556666666655555443
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.79 E-value=7.6e-17 Score=154.32 Aligned_cols=266 Identities=14% Similarity=0.030 Sum_probs=220.4
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHH
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (532)
+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|++++|.+.|+++.+.. +.+..++..+..
T Consensus 63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~ 140 (368)
T 1fch_A 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAV 140 (368)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45678889999999999999999999999875 5678899999999999999999999999999876 567889999999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCcCHHHHHH---------------HHHHHHhcCChHHHHHHHHHHHHCCCCc-CHHh
Q 009556 156 GFLKKGLLGLGSRLLMVMEDMGICRNQETYEI---------------LLDYHVNAGRLDDTWLIINEMRSKGFQL-NSFV 219 (532)
Q Consensus 156 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~---------------li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~ 219 (532)
.+...|++++|.+.|+++...... +...+.. .+..+...|++++|...|+++.+..... +..+
T Consensus 141 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 219 (368)
T 1fch_A 141 SFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDV 219 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHH
Confidence 999999999999999999986532 2222221 2444448999999999999998864332 5788
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 009556 220 YGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCK 299 (532)
Q Consensus 220 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 299 (532)
+..+...+...|++++|...++++.+.. +.+..++..+...+.+.|++++|...|+++.+... .+...+..+...|.+
T Consensus 220 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~ 297 (368)
T 1fch_A 220 QCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCIN 297 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHH
Confidence 9999999999999999999999998874 44688999999999999999999999999887532 367889999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCC----------CHHHHHHHHHHHHccCCHHHHHHHHH
Q 009556 300 AGDVAKALELFTQMQEQGFYP----------DPKIFITIISCLGELGKWDVIKKNFE 346 (532)
Q Consensus 300 ~g~~~~A~~~~~~m~~~~~~~----------~~~~~~~ll~~~~~~~~~~~a~~~~~ 346 (532)
.|++++|...++++.+..... ...++..+..++...|+.++|..++.
T Consensus 298 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 298 LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 999999999999987542111 15667777777777777777776655
No 24
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=6.1e-18 Score=158.88 Aligned_cols=352 Identities=13% Similarity=0.127 Sum_probs=148.4
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHH
Q 009556 89 KLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSR 168 (532)
Q Consensus 89 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 168 (532)
+.|++++|.+.++++. ++.+|..++.++.+.|++++|++.|.+ .+|..+|..++..+...|++++|++
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 5577888888888873 234788888888888888888888854 2566788888888888888888888
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCC
Q 009556 169 LLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGL 248 (532)
Q Consensus 169 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 248 (532)
.++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 77666653 3556778888888888888888887774 356678888888888888888888888866
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009556 249 SLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITI 328 (532)
Q Consensus 249 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 328 (532)
..|..++.++.+.|++++|.+.+.++. ++.+|..++.+|...|+++.|...... +...+.-...+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA~------~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHcC------CchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHH
Confidence 257888888888888888888888872 778888888888888888888554443 22344445567
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcC--CcccHHHHHHHHHHcCCCC------CHHHHHHHHH
Q 009556 329 ISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYG--RFRDPEECIAALKLEGLQP------SGSMFCILAN 400 (532)
Q Consensus 329 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~------~~~~~~~li~ 400 (532)
+..|.+.|+++++..+++...... +-....|+.+.-+|++-. +..+.++.|.. +.+++| +...|.-+..
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHH
Confidence 788888888888888888887665 556777777777777642 23333333321 111111 2356778888
Q ss_pred HHHhcCCHHHHHHHHHHhccCC-----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009556 401 AYAQQGLCEQTVKVLQLMEPEG-----------IEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLM 469 (532)
Q Consensus 401 ~~~~~g~~~~A~~~~~~m~~~~-----------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 469 (532)
.|.+.++++.|....-+-.... -..|...|-..+.-|... .+..--.++.-+.. ..| .+..+
T Consensus 291 ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~-~p~~l~~ll~~l~~---~ld---~~r~v 363 (449)
T 1b89_A 291 LYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF-KPLLLNDLLMVLSP---RLD---HTRAV 363 (449)
T ss_dssp HHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH-CGGGHHHHHHHHGG---GCC---HHHHH
T ss_pred HHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc-CHHHHHHHHHHHHh---ccC---cHHHH
Confidence 8888888887776443322110 023445555555555411 11111111111111 112 23444
Q ss_pred HHHHhcCCcChHHHHHHHHHhC
Q 009556 470 KAFIRAKKFHKVPEIYKQMESS 491 (532)
Q Consensus 470 ~~~~~~g~~~~a~~~~~~m~~~ 491 (532)
..+.+.|...-+...++.....
T Consensus 364 ~~~~~~~~l~l~~~yl~~v~~~ 385 (449)
T 1b89_A 364 NYFSKVKQLPLVKPYLRSVQNH 385 (449)
T ss_dssp HHHHHTTCTTTTHHHHHHHHTT
T ss_pred HHHHHcCCcHHHHHHHHHHHHh
Confidence 5556666666666666666543
No 25
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.78 E-value=6e-19 Score=178.58 Aligned_cols=151 Identities=17% Similarity=0.123 Sum_probs=127.7
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHH---cCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHH
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQA---LGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNI 152 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ 152 (532)
-..+||++|++||+.|++++|.++|++|.+ .|+.||..|||+||.+||+.|++++|.++|++|.+.|+.||..|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 356899999999999999999999988764 57899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCh-hHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcC------HHhHHHHHH
Q 009556 153 LLRGFLKKGLL-GLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLN------SFVYGKVIG 225 (532)
Q Consensus 153 li~~~~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~------~~~~~~ll~ 225 (532)
+|.++++.|+. ++|.++|++|.+.|+.||..+|+.++.+..+. .+++..+++ ..++.|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 99999999985 78999999999999999999999998766553 444444444 3345544 455556666
Q ss_pred HHHcCC
Q 009556 226 LYRDNG 231 (532)
Q Consensus 226 ~~~~~~ 231 (532)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 776655
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.78 E-value=9.9e-17 Score=150.69 Aligned_cols=265 Identities=9% Similarity=0.010 Sum_probs=170.3
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHH
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (532)
+...|..+...+.+.|++++|+.+|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 45567788889999999999999999998875 5577889999999999999999999999998875 557788999999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHH--------------HH-HHHhcCChHHHHHHHHHHHHCCCCcCHHhH
Q 009556 156 GFLKKGLLGLGSRLLMVMEDMGICRNQETYEIL--------------LD-YHVNAGRLDDTWLIINEMRSKGFQLNSFVY 220 (532)
Q Consensus 156 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l--------------i~-~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 220 (532)
.+...|++++|.+.++++.+... .+...+..+ .. .+...|++++|.+.++++.+.... +...+
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 175 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQP-QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLH 175 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTST-TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHH
Confidence 99999999999999999987543 222233332 11 244555666666666666554322 45555
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 009556 221 GKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKA 300 (532)
Q Consensus 221 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 300 (532)
..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.|+++.+... .+...+..+...+...
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINP-GYVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHh
Confidence 555566666666666666666655543 22455555555556666666666666655554321 2345555555555556
Q ss_pred CCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHccCCHHHHHHHHH
Q 009556 301 GDVAKALELFTQMQEQGFYP-----------DPKIFITIISCLGELGKWDVIKKNFE 346 (532)
Q Consensus 301 g~~~~A~~~~~~m~~~~~~~-----------~~~~~~~ll~~~~~~~~~~~a~~~~~ 346 (532)
|++++|.+.++++.+..... +...+..+..++.+.|+.++|..+++
T Consensus 254 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 254 SQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 66666665555554332110 23444445555555555555555443
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.76 E-value=1.3e-16 Score=152.61 Aligned_cols=267 Identities=11% Similarity=-0.012 Sum_probs=157.7
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 009556 111 SSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLD 190 (532)
Q Consensus 111 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 190 (532)
+...+..+...+.+.|++++|.+.|+++.+.. +.+..++..+...|.+.|++++|.+.|+++.+... .+..+|..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 34558888888888999999999999888765 45778888888888888999999988888887643 45778888888
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCcCHH----------hHHHHHHHHHcCCChHHHHHHHHHHHHcCCC-CCHHHHHHHH
Q 009556 191 YHVNAGRLDDTWLIINEMRSKGFQLNSF----------VYGKVIGLYRDNGMWKKAVGIVEEIREMGLS-LDRQIYNSII 259 (532)
Q Consensus 191 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~----------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li 259 (532)
.|...|++++|.+.|+++.+.... +.. .+..+...+...|++++|.+.++++.+.... .+..++..+.
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPK-YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHH-HHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCcc-chHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 888888888888888888764211 111 1122344455555555555555555544211 1344455555
Q ss_pred HHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 009556 260 DTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWD 339 (532)
Q Consensus 260 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 339 (532)
..|.+.|++++|.+.|++..+... .+..+|..+...|...|++++|++.|+++.
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al------------------------- 274 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRAL------------------------- 274 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------------------
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------------------------
Confidence 555555555555555555444321 134444455555555555555555555444
Q ss_pred HHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCC-----------CCHHHHHHHHHHHHhcCCH
Q 009556 340 VIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQ-----------PSGSMFCILANAYAQQGLC 408 (532)
Q Consensus 340 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~ 408 (532)
+.. +.+..++..+..+|.+.|++++|...|+++.+.... .+...|..+..++...|+.
T Consensus 275 ----------~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 343 (365)
T 4eqf_A 275 ----------EIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQP 343 (365)
T ss_dssp ----------HHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCH
T ss_pred ----------hcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcH
Confidence 432 223444445555555555555555555544332110 1245677777777777777
Q ss_pred HHHHHHHHH
Q 009556 409 EQTVKVLQL 417 (532)
Q Consensus 409 ~~A~~~~~~ 417 (532)
+.+.+....
T Consensus 344 ~~a~~~~~~ 352 (365)
T 4eqf_A 344 ELFQAANLG 352 (365)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHh
Confidence 777766654
No 28
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.76 E-value=2.3e-18 Score=174.43 Aligned_cols=138 Identities=12% Similarity=0.121 Sum_probs=104.9
Q ss_pred CCCHhHHHHHHHHHHhcCCcccHHHHHHHHH---HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHH
Q 009556 354 GKIGAIYAILVDIYGQYGRFRDPEECIAALK---LEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVML 430 (532)
Q Consensus 354 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 430 (532)
.....+|+++|++|++.|++++|.++|++|. ..|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3346678888888888888888888887765 3467888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCC
Q 009556 431 NVLINAFGVAGKY-KEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPD 496 (532)
Q Consensus 431 ~~li~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~ 496 (532)
|++|.++++.|+. ++|.++|++|.+.|+.||..+|++++.++.+. .+++..+++ ..++.|+
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~ 265 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLP 265 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCC
Confidence 8888888888874 67788888888888888888888887665554 344444444 3455554
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.75 E-value=5.5e-16 Score=145.56 Aligned_cols=280 Identities=10% Similarity=-0.034 Sum_probs=169.9
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 009556 112 SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDY 191 (532)
Q Consensus 112 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 191 (532)
...+..+...+...|++++|..+|+++.+.. +.+...+..+...+.+.|++++|.+.|+++.+... .+..++..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHHH
Confidence 3456677888888999999999999988765 45777888888889999999999999998887643 467788888888
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHhccCCHH
Q 009556 192 HVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIID--TFGKYGELV 269 (532)
Q Consensus 192 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~ 269 (532)
+...|++++|.+.++++.+.... +...+..+...+ ++......+.. .+...|+++
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHH
Confidence 88889999999988888776322 222222220000 00000111111 244455555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 009556 270 EALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMK 349 (532)
Q Consensus 270 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 349 (532)
+|.+.++++.+... .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++.+.
T Consensus 156 ~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 233 (327)
T 3cv0_A 156 ECRTLLHAALEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRAL 233 (327)
T ss_dssp HHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555555544322 144555555555555555666655555555432 2234555555555566666666666666555
Q ss_pred hcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 009556 350 DRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQP-----------SGSMFCILANAYAQQGLCEQTVKVLQLM 418 (532)
Q Consensus 350 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m 418 (532)
+.. +.+...+..+...|...|++++|.+.++++.+..... +...|..+...+...|++++|..++++.
T Consensus 234 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 234 DIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 543 3345555666666666666666666666655443221 3556667777777777777777776644
Q ss_pred c
Q 009556 419 E 419 (532)
Q Consensus 419 ~ 419 (532)
.
T Consensus 313 l 313 (327)
T 3cv0_A 313 V 313 (327)
T ss_dssp S
T ss_pred H
Confidence 3
No 30
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.75 E-value=2.5e-15 Score=149.02 Aligned_cols=391 Identities=10% Similarity=-0.032 Sum_probs=240.4
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHc--------CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQAL--------GFHPSSISYASLIEALASVGRTLEADAIFQEMVCF-----G 142 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-----g 142 (532)
....||.+...+...|++++|++.|++..+. ..+....+|+.+..+|...|++++|...+++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4567899999999999999999999887542 12334568899999999999999999999887642 1
Q ss_pred -C-CCChHhHHHHHHHHHhc--CChhHHHHHHHHHHHcCCCcCHHHHHHHHHH---HHhcCChHHHHHHHHHHHHCCCCc
Q 009556 143 -F-NPKLRFYNILLRGFLKK--GLLGLGSRLLMVMEDMGICRNQETYEILLDY---HVNAGRLDDTWLIINEMRSKGFQL 215 (532)
Q Consensus 143 -~-~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~---~~~~~~~~~a~~~~~~m~~~~~~~ 215 (532)
. .....++..+..++.+. +++++|.+.|++..+..+ -+...+..+... +...++.++|++.+++..+....
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~- 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD- 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-
Confidence 1 12345666665566554 468899999999887543 344455554444 34567778888888887765322
Q ss_pred CHHhHHHHHHHHHc----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 009556 216 NSFVYGKVIGLYRD----NGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWN 291 (532)
Q Consensus 216 ~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 291 (532)
+..++..+...+.. .+++++|.+.+++..+.. +.+..++..+...|...|++++|...+++..+.... +...+.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHH
Confidence 45555555544443 467788888888887764 446778888888899999999999999888765322 455666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcC
Q 009556 292 SLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYG 371 (532)
Q Consensus 292 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 371 (532)
.+...|...+.... ... ... ........+..+.|...++...+.. +.+...+..+...|...|
T Consensus 286 ~lg~~y~~~~~~~~---------~~~-~~~------~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 286 QIGCCYRAKVFQVM---------NLR-ENG------MYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhh---------hHH-HHH------HHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhc
Confidence 66555532211110 000 000 0000111223567778888877665 445667788888899999
Q ss_pred CcccHHHHHHHHHHcCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 009556 372 RFRDPEECIAALKLEGLQPSGS--MFCILAN-AYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALS 448 (532)
Q Consensus 372 ~~~~a~~~~~~~~~~~~~~~~~--~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 448 (532)
++++|+..|++..+....+... .+..+.. .....|+.++|+..+++..+. .|+...... ....+.+
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l~~ 417 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKLQK 417 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHHHH
Confidence 9999999999888765433221 2222222 234678899999999888764 454433222 2234455
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCC-CCCCHHH
Q 009556 449 VYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSG-CTPDRKA 499 (532)
Q Consensus 449 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t 499 (532)
++++..+.. +.+..+|..|..+|...|++++|.+.|++..+.| ..|+..+
T Consensus 418 ~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~ 468 (472)
T 4g1t_A 418 IAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASS 468 (472)
T ss_dssp HHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC---------------------
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhh
Confidence 566655542 3467788999999999999999999999998754 3455443
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=1.6e-15 Score=139.46 Aligned_cols=253 Identities=11% Similarity=0.080 Sum_probs=174.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCH--hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcC
Q 009556 84 IQYCCKLGDIDEAMALLAQMQALGFHPSS--ISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKG 161 (532)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 161 (532)
|+-....|+++.|+..++..... .|+. .....+.+++...|+++.|+..++.. -+|+..++..+...+...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCC
Confidence 45556778888888888776543 2332 34456678888888888888766441 3567777888888888888
Q ss_pred ChhHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHH
Q 009556 162 LLGLGSRLLMVMEDMGICR-NQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIV 240 (532)
Q Consensus 162 ~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 240 (532)
+.++|.+.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..+...+.+.|++++|.+.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8888888888887765434 455666667788888888888888876 346677777778888888888888888
Q ss_pred HHHHHcCCCCCHHH---HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 009556 241 EEIREMGLSLDRQI---YNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQG 317 (532)
Q Consensus 241 ~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 317 (532)
+.+.+.. |+... ...++..+...|++++|..+|+++.+. .+.+...|+.+..++.+.|++++|.+.+++..+..
T Consensus 154 ~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8887764 33211 122334444557777777777777765 23466777777777777777777777777776653
Q ss_pred CCCCHHHHHHHHHHHHccCCHHH-HHHHHHHHHhcC
Q 009556 318 FYPDPKIFITIISCLGELGKWDV-IKKNFENMKDRG 352 (532)
Q Consensus 318 ~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~ 352 (532)
+-+..++..++..+...|+.++ +.++++++.+..
T Consensus 231 -p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 231 -SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp -TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred -CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 3356667777777777777654 456666666554
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=1.7e-15 Score=139.24 Aligned_cols=252 Identities=13% Similarity=0.155 Sum_probs=165.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCh--HhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC
Q 009556 119 IEALASVGRTLEADAIFQEMVCFGFNPKL--RFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAG 196 (532)
Q Consensus 119 i~~~~~~~~~~~A~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 196 (532)
++.....|+++.|+..++..... .|+. .....+.++|...|+++.|...++.. -+|+..++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCC
Confidence 44555678888888777665432 2332 34455677788888888877655441 2356667777777777777
Q ss_pred ChHHHHHHHHHHHHCCCCc-CHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 009556 197 RLDDTWLIINEMRSKGFQL-NSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVF 275 (532)
Q Consensus 197 ~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 275 (532)
+.++|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..|.+.|+.++|.+.|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8888888888877765444 444555566777777888887777766 346667777777777777777777777
Q ss_pred HHHHhCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 009556 276 EKMQQESIRPDIVTW---NSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRG 352 (532)
Q Consensus 276 ~~m~~~~~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 352 (532)
+++.+.. |+.... ..++..+...|++++|..+|+++.+. .+.+...+..+..++.+.|++++|...++++.+..
T Consensus 154 ~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7776653 332211 11223333446777777777777765 34466667777777777777777777777777654
Q ss_pred CCCCHhHHHHHHHHHHhcCCccc-HHHHHHHHHHc
Q 009556 353 HGKIGAIYAILVDIYGQYGRFRD-PEECIAALKLE 386 (532)
Q Consensus 353 ~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~ 386 (532)
+.+..++..++..+...|+.++ +.++++++.+.
T Consensus 231 -p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 231 -SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp -TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 4456666677777777777654 45666666655
No 33
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.74 E-value=6.2e-14 Score=146.86 Aligned_cols=349 Identities=10% Similarity=0.104 Sum_probs=241.7
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHH
Q 009556 111 SSISYASLIEALASVGRTLEADAIFQEMVCFG--FNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEIL 188 (532)
Q Consensus 111 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 188 (532)
++.--...+++|...|.+.+|+++++++.-.+ +..+...-+.++....+. +.....+...+.... + ...+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eI 1055 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDI 1055 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHH
Confidence 33444566788888888888888888888432 113345556666666665 445555555554421 1 3346
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 009556 189 LDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGEL 268 (532)
Q Consensus 189 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 268 (532)
...+...|.+++|..+|++... .....+.++ -..+++++|.++.++. -+..+|..+..++.+.|++
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLi---e~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~ 1121 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDV-----NTSAVQVLI---EHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMV 1121 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHH---HHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCH
Confidence 6777888888888888888521 222222232 2667788888887755 2567788888888888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 009556 269 VEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENM 348 (532)
Q Consensus 269 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 348 (532)
++|.+.|.+. .|...|..++.++.+.|++++|.+.+....+.. +++...+.++.+|++.+++++...+.
T Consensus 1122 kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI--- 1190 (1630)
T 1xi4_A 1122 KEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI--- 1190 (1630)
T ss_pred HHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---
Confidence 8888888664 267778888888888888888888888776643 33333445788888888887644442
Q ss_pred HhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHH
Q 009556 349 KDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLV 428 (532)
Q Consensus 349 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 428 (532)
+ .++...+..+.+.|...|++++|..+|... ..|..+...|.+.|++++|.+.+++.. +..
T Consensus 1191 -~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~ 1251 (1630)
T 1xi4_A 1191 -N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STR 1251 (1630)
T ss_pred -h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHH
Confidence 1 334556667888888888888888888875 358888888888888888888888763 567
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 009556 429 MLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSALV 508 (532)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~a~~ 508 (532)
+|..+..+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++...... .-....+.-|...+.
T Consensus 1252 aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLya 1325 (1630)
T 1xi4_A 1252 TWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS 1325 (1630)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHH
Confidence 888888888888888888776543 23356667788888888888888888887776432 223345555666666
Q ss_pred HHhhhhhcc
Q 009556 509 VLEQRRCKQ 517 (532)
Q Consensus 509 ~~~~~~~~~ 517 (532)
+....+-.+
T Consensus 1326 Ky~peklmE 1334 (1630)
T 1xi4_A 1326 KFKPQKMRE 1334 (1630)
T ss_pred hCCHHHHHH
Confidence 665554444
No 34
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.73 E-value=4.5e-16 Score=146.25 Aligned_cols=267 Identities=13% Similarity=0.090 Sum_probs=134.8
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHH
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (532)
++.+|..+..++.+.|++++|++.|.+. +|..+|..++.++...|++++|+..++..++. .+++.+.+.++.
T Consensus 31 ~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~ 102 (449)
T 1b89_A 31 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF 102 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHH
Confidence 3458999999999999999999999653 57779999999999999999999988777764 466888999999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHH
Q 009556 156 GFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKK 235 (532)
Q Consensus 156 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 235 (532)
+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|...|..+ ..|..+..++.+.|++++
T Consensus 103 ~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~ 166 (449)
T 1b89_A 103 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQA 166 (449)
T ss_dssp ------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHH
T ss_pred HHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHH
Confidence 9999999999998885 277789999999999999999999999976 479999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009556 236 AVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQE 315 (532)
Q Consensus 236 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 315 (532)
|.+.++++ .++.+|..++.+|...|+++.|......+. ..+.....++..|.+.|.+++|..+++....
T Consensus 167 AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~ 235 (449)
T 1b89_A 167 AVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALG 235 (449)
T ss_dssp HHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhC
Confidence 99999988 288999999999999999999976655433 2444456799999999999999999999886
Q ss_pred CCCCCCHHHHHHHHHHHHcc--CCHHHHHHHHHHHHhcCCCC------CHhHHHHHHHHHHhcCCcccHHHHH
Q 009556 316 QGFYPDPKIFITIISCLGEL--GKWDVIKKNFENMKDRGHGK------IGAIYAILVDIYGQYGRFRDPEECI 380 (532)
Q Consensus 316 ~~~~~~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a~~~~ 380 (532)
.. +-....|+-+...+++- ++..+..+.|.. +.++++ +...|..++-.|.+.++++.|....
T Consensus 236 le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 236 LE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp ST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred Cc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 54 44566777776666654 334444444331 122222 4567899999999999999887643
No 35
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.73 E-value=2e-14 Score=142.46 Aligned_cols=374 Identities=11% Similarity=-0.045 Sum_probs=244.4
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC--------CCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHc-----
Q 009556 110 PSSISYASLIEALASVGRTLEADAIFQEMVCF--------GFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDM----- 176 (532)
Q Consensus 110 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----- 176 (532)
.....||.+...+...|++++|++.|++..+. .-+....+|+.+...|...|++++|...+++..+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34567999999999999999999999887642 11234578899999999999999999999887653
Q ss_pred C-CC-cCHHHHHHHHHHHHhc--CChHHHHHHHHHHHHCCCCcCHHhHHHHHHH---HHcCCChHHHHHHHHHHHHcCCC
Q 009556 177 G-IC-RNQETYEILLDYHVNA--GRLDDTWLIINEMRSKGFQLNSFVYGKVIGL---YRDNGMWKKAVGIVEEIREMGLS 249 (532)
Q Consensus 177 ~-~~-~~~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~ 249 (532)
+ .. ....++..+..++... +++++|.+.|++..+.... +...+..+..+ +...++.++|++.+++..+.+ +
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 1 01 2345666665555554 5689999999998876422 44455444444 445678888999999888765 3
Q ss_pred CCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 009556 250 LDRQIYNSIIDTFGK----YGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIF 325 (532)
Q Consensus 250 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 325 (532)
.+..++..+...+.. .++.++|.+.+++...... .+...+..+...|...|++++|.+.+++..+.. +-+..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence 356666666555544 4577889999988776533 367788889999999999999999999988753 2345556
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 009556 326 ITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQ 405 (532)
Q Consensus 326 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 405 (532)
..+...|...+.... ... ...........+..+.|...++...+.+ +.+...+..+...|...
T Consensus 285 ~~lg~~y~~~~~~~~---------~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVM---------NLR-------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhh---------hHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHh
Confidence 555554432111100 000 0000111111233567888888887764 33456688899999999
Q ss_pred CCHHHHHHHHHHhccCCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHH
Q 009556 406 GLCEQTVKVLQLMEPEGIEPNLV--MLNVLIN-AFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVP 482 (532)
Q Consensus 406 g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 482 (532)
|++++|.+.|++..+....+... .+..+.. .....|++++|+..|++..+. .|+.......+ +.+.
T Consensus 348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~~---------~~l~ 416 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKMK---------DKLQ 416 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHHH---------HHHH
T ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHH---------HHHH
Confidence 99999999999988764333221 2233332 345789999999999999874 45543333222 2344
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhhc
Q 009556 483 EIYKQMESSGCTPDRKARQILQSALVVLEQRRCK 516 (532)
Q Consensus 483 ~~~~~m~~~g~~p~~~t~~~l~~a~~~~~~~~~~ 516 (532)
+++++..+.. +.+..++..+...+...|+.+.+
T Consensus 417 ~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A 449 (472)
T 4g1t_A 417 KIAKMRLSKN-GADSEALHVLAFLQELNEKMQQA 449 (472)
T ss_dssp HHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 5555555432 33567888888888877765443
No 36
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.72 E-value=1.8e-13 Score=143.46 Aligned_cols=338 Identities=12% Similarity=0.117 Sum_probs=237.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHH
Q 009556 79 SYNKSIQYCCKLGDIDEAMALLAQMQALG--FHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (532)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (532)
--...+++|...|++.+|++++++..-.+ +.-+....+.++....+. +..+..+....... .+ ..-+...
T Consensus 987 eVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~----~d---~~eIA~I 1058 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN----YD---APDIANI 1058 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh----cc---HHHHHHH
Confidence 33568899999999999999999998442 113445666677666666 55666666555442 11 3346777
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHH
Q 009556 157 FLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKA 236 (532)
Q Consensus 157 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 236 (532)
+...|.+++|..+|++.. ......+.++. ..+++++|.++.++. -+..+|..+..++...|++++|
T Consensus 1059 ai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHH
Confidence 888899999999888853 12222333332 667888888888755 2577888888888888888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 009556 237 VGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQ 316 (532)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 316 (532)
.+.|.+. .|...|..++..+.+.|++++|.+.+....+.. ++....+.++.+|++.+++++...+. .
T Consensus 1125 IdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~- 1191 (1630)
T 1xi4_A 1125 IDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N- 1191 (1630)
T ss_pred HHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h-
Confidence 8888553 367778888888888888888888888766653 23223335888888888877544332 2
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHH
Q 009556 317 GFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFC 396 (532)
Q Consensus 317 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 396 (532)
.++...+..+...|...|++++|..+|..+ ..|..+..+|.+.|++++|.+.+++. .+..+|.
T Consensus 1192 --~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWk 1254 (1630)
T 1xi4_A 1192 --GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWK 1254 (1630)
T ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHH
Confidence 345566677888888888888888888874 36888888888888888888888875 3447788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009556 397 ILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIR 474 (532)
Q Consensus 397 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 474 (532)
.+..+|...|++..|....... ..+...+..++..|.+.|.+++|+.+++...... +-....|+-|...+.+
T Consensus 1255 ev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1255 EVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 1326 (1630)
T ss_pred HHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHh
Confidence 8888888888888777765532 3355667788888888888888888887766443 2233455555555554
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=4.9e-14 Score=127.24 Aligned_cols=225 Identities=13% Similarity=0.024 Sum_probs=161.8
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----hHhH
Q 009556 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGF--NPK----LRFY 150 (532)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~--~~~----~~~~ 150 (532)
...|..+...+...|++++|+..|+++.+.. .+...+..+...+...|++++|.+.+++..+... .++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3567778888888899999999999888876 6778888888888899999999998888876431 111 4677
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcC
Q 009556 151 NILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDN 230 (532)
Q Consensus 151 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 230 (532)
..+...+.+.|++++|.+.|++..+.. |+. ..+.+.|++++|...++++..... .+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHh
Confidence 788888888888888888888887743 332 345556777788888877776521 2455666677777777
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 009556 231 GMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELF 310 (532)
Q Consensus 231 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 310 (532)
|++++|...++++.+.. +.+..++..+...+.+.|++++|...|++..+... .+...|..+...+...|++++|.+.+
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 77777777777777654 33566677777777777777777777777665432 24566667777777777777777777
Q ss_pred HHHHH
Q 009556 311 TQMQE 315 (532)
Q Consensus 311 ~~m~~ 315 (532)
++..+
T Consensus 231 ~~a~~ 235 (258)
T 3uq3_A 231 DAART 235 (258)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.65 E-value=2.7e-14 Score=125.32 Aligned_cols=197 Identities=14% Similarity=0.016 Sum_probs=128.5
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHH
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (532)
+...|..+...+.+.|++++|+..|++..+.. +.+...+..+...+.+.|++++|+..+++..+.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 45567777778888888888888888887764 5567778888888888888888888888887765 446677777777
Q ss_pred HHHhc-----------CChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHH
Q 009556 156 GFLKK-----------GLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVI 224 (532)
Q Consensus 156 ~~~~~-----------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 224 (532)
.+.+. |++++|...|++..+..+ .+...|..+...+...|++++|+..|++..+.. .+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 77777 777777777777666433 345566666667777777777777777766655 4566666666
Q ss_pred HHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 009556 225 GLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKM 278 (532)
Q Consensus 225 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 278 (532)
.++...|++++|...|++..+.. +.+...+..+...+.+.|++++|.+.|++.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 66666677777776666666653 235556666666666666666666666554
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.64 E-value=5.6e-14 Score=126.81 Aligned_cols=221 Identities=12% Similarity=0.034 Sum_probs=100.7
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCC--CCC----HHHHHHH
Q 009556 220 YGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESI--RPD----IVTWNSL 293 (532)
Q Consensus 220 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~----~~~~~~l 293 (532)
+..+...+...|++++|...++++.+.. .+...+..+...+...|++++|.+.+++..+... .++ ...|..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3333444444444444444444444433 3344444444444444444444444444433210 011 3445555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCc
Q 009556 294 IRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRF 373 (532)
Q Consensus 294 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 373 (532)
...+...|++++|.+.+++..+. .|+. ..+.+.|++++|...++.+.... +.+...+..+...+...|++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCH
Confidence 55555555555555555555543 2221 12333444555555555544432 22333444444455555555
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009556 374 RDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLM 453 (532)
Q Consensus 374 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 453 (532)
++|...+++..+.. +.+...|..+...|...|++++|.+.+++..+.. +.+...|..+..++...|++++|.+.+++.
T Consensus 156 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 156 PNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 55555555544432 2234444445555555555555555555444432 223444445555555555555555555544
Q ss_pred H
Q 009556 454 K 454 (532)
Q Consensus 454 ~ 454 (532)
.
T Consensus 234 ~ 234 (258)
T 3uq3_A 234 R 234 (258)
T ss_dssp H
T ss_pred H
Confidence 4
No 40
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.63 E-value=3.1e-14 Score=139.58 Aligned_cols=348 Identities=17% Similarity=0.113 Sum_probs=217.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCChHhHHHHHHHHH
Q 009556 82 KSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRT---LEADAIFQEMVCFGFNPKLRFYNILLRGFL 158 (532)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~---~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 158 (532)
.+...+.+.|++++|+++|++..+.| ++..+..+...+...|+. ++|.++|++..+. +...+..|...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 46677788999999999999998876 344555666667777887 8999999988853 5566677777555
Q ss_pred hcC-----ChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChH---HHHHHHHHHHHCCCCcCHHhHHHHHHHHHcC
Q 009556 159 KKG-----LLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLD---DTWLIINEMRSKGFQLNSFVYGKVIGLYRDN 230 (532)
Q Consensus 159 ~~g-----~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~---~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 230 (532)
..| +.++|.+.|++..+.|. ...+..|...|...+..+ ++.+.+......| +......+...|...
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ 154 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 555 77899999999988654 226667777777665543 3444455444443 345666677777777
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc----CCH
Q 009556 231 GMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYG---ELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKA----GDV 303 (532)
Q Consensus 231 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~----g~~ 303 (532)
+.++++......+.+.-...+...+..|...|.+.| +.++|++.|++..+.|.. +...+..+...|... +++
T Consensus 155 ~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp TCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCH
T ss_pred CCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCH
Confidence 755544444333322211223337777888888888 888899988888887643 555445666666544 688
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcC-----Cccc
Q 009556 304 AKALELFTQMQEQGFYPDPKIFITIISC-L--GELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYG-----RFRD 375 (532)
Q Consensus 304 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~ 375 (532)
++|+++|++.. .| +...+..+... + ...++.++|...|++..+.+ +...+..|...|. .| ++++
T Consensus 234 ~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~ 305 (452)
T 3e4b_A 234 KTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKA 305 (452)
T ss_dssp HHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHH
T ss_pred HHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHH
Confidence 88998888877 33 33444455554 3 45788888888888888776 5666777777776 44 7888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 009556 376 PEECIAALKLEGLQPSGSMFCILANAYAQ----QGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGV----AGKYKEAL 447 (532)
Q Consensus 376 a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~ 447 (532)
|...|++.. ..+...+..|...|.. ..++++|.+.|+...+.| +......|...|.. ..+.++|.
T Consensus 306 A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~ 378 (452)
T 3e4b_A 306 AEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAY 378 (452)
T ss_dssp HHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHH
T ss_pred HHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHH
Confidence 888888766 3355666667666665 338888888888888766 23344555666653 45788888
Q ss_pred HHHHHHHHCCC
Q 009556 448 SVYHLMKDIGI 458 (532)
Q Consensus 448 ~~~~~m~~~~~ 458 (532)
.+|+...+.|.
T Consensus 379 ~~~~~A~~~g~ 389 (452)
T 3e4b_A 379 VFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHHCCC
Confidence 88888877663
No 41
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.63 E-value=4.4e-14 Score=123.91 Aligned_cols=199 Identities=16% Similarity=0.082 Sum_probs=115.0
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHH
Q 009556 109 HPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEIL 188 (532)
Q Consensus 109 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 188 (532)
+++...+..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|...|++..+..+ .+...|..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHH
Confidence 4566677777788888888888888888877665 45667777788888888888888888887777543 455677777
Q ss_pred HHHHHhc-----------CChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 009556 189 LDYHVNA-----------GRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNS 257 (532)
Q Consensus 189 i~~~~~~-----------~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 257 (532)
...+.+. |++++|...|++..+.... +...+..+...+...|++++|+..|++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 7777766 6666666666665554221 34455555555555555555555555555554 35555555
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009556 258 IIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQM 313 (532)
Q Consensus 258 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 313 (532)
+...|...|++++|...|++..+... .+...+..+...+...|++++|++.+++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 55555555555555555555554321 13444555555555555555555555443
No 42
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.62 E-value=1.8e-12 Score=118.27 Aligned_cols=224 Identities=11% Similarity=-0.006 Sum_probs=151.7
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChHhHH
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALAS----VGRTLEADAIFQEMVCFGFNPKLRFYN 151 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~g~~~~~~~~~ 151 (532)
++..+..+...|.+.|++++|++.|++..+. .+..++..+...+.. .+++++|.+.|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3455666777777788888888888887763 355667777777777 788888888888877754 566777
Q ss_pred HHHHHHHh----cCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCcCHHhHHHH
Q 009556 152 ILLRGFLK----KGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVN----AGRLDDTWLIINEMRSKGFQLNSFVYGKV 223 (532)
Q Consensus 152 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 223 (532)
.+...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77777777 777777777777777653 56667777777777 777777777777776654 44555566
Q ss_pred HHHHHc----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 009556 224 IGLYRD----NGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGK----YGELVEALEVFEKMQQESIRPDIVTWNSLIR 295 (532)
Q Consensus 224 l~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 295 (532)
...+.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 666665 667777777777666653 44556666666666 666666666666666542 2445555666
Q ss_pred HHHH----cCCHHHHHHHHHHHHHCC
Q 009556 296 WHCK----AGDVAKALELFTQMQEQG 317 (532)
Q Consensus 296 ~~~~----~g~~~~A~~~~~~m~~~~ 317 (532)
.|.. .+++++|.+.|++..+.|
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 6666 666666666666665543
No 43
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.62 E-value=6.5e-14 Score=137.32 Aligned_cols=345 Identities=10% Similarity=0.020 Sum_probs=235.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCCh---hHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 009556 117 SLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLL---GLGSRLLMVMEDMGICRNQETYEILLDYHV 193 (532)
Q Consensus 117 ~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 193 (532)
.+...+.+.|++++|.++|++..+.| +...+..|...|...|+. ++|.+.|++..+. +...+..+...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 35677788999999999999998876 334445566667778888 8999999998863 5566677777555
Q ss_pred hcC-----ChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCCh---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 009556 194 NAG-----RLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMW---KKAVGIVEEIREMGLSLDRQIYNSIIDTFGKY 265 (532)
Q Consensus 194 ~~~-----~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 265 (532)
..+ ++++|...|++..+.|.. ..+..+...|...+.. .++.+.+....+.| +...+..+...|...
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ 154 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 555 788999999999987643 3666777777765543 34555566655555 344566777777777
Q ss_pred CC----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc---
Q 009556 266 GE----LVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAG---DVAKALELFTQMQEQGFYPDPKIFITIISCLGEL--- 335 (532)
Q Consensus 266 g~----~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~--- 335 (532)
+. .+.+..+++..... +...+..+...|...| +.++|+++|++..+.| .++...+..+...|...
T Consensus 155 ~~~~~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~ 229 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLG 229 (452)
T ss_dssp TCGGGGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGS
T ss_pred CCcccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCC
Confidence 74 44455555544432 3337888889999999 9999999999999887 44565556666666554
Q ss_pred -CCHHHHHHHHHHHHhcCCCCCHhHHHHHHHH-H--HhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-----
Q 009556 336 -GKWDVIKKNFENMKDRGHGKIGAIYAILVDI-Y--GQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQG----- 406 (532)
Q Consensus 336 -~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----- 406 (532)
++.++|...|+... . -++..+..+... | ...++.++|.+.|++..+.| +...+..|...|. .|
T Consensus 230 ~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~ 301 (452)
T 3e4b_A 230 TPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPA 301 (452)
T ss_dssp SCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCC
T ss_pred CCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCC
Confidence 78999999999987 3 356667777776 4 56899999999999998876 5667777887777 55
Q ss_pred CHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCc
Q 009556 407 LCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGV----AGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIR----AKKF 478 (532)
Q Consensus 407 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~ 478 (532)
++++|.+.|++.. .| +...+..|...|.. ..++++|..+|++..+.|. ......|...|.. ..+.
T Consensus 302 d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~ 374 (452)
T 3e4b_A 302 DAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDP 374 (452)
T ss_dssp CHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCH
T ss_pred CHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCH
Confidence 9999999999988 44 66777788877776 4499999999999988764 3445566666654 4578
Q ss_pred ChHHHHHHHHHhCCCC
Q 009556 479 HKVPEIYKQMESSGCT 494 (532)
Q Consensus 479 ~~a~~~~~~m~~~g~~ 494 (532)
++|..+|+...+.|..
T Consensus 375 ~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 375 LNAYVFSQLAKAQDTP 390 (452)
T ss_dssp HHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHCCCH
Confidence 8899999998887743
No 44
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.60 E-value=7e-13 Score=125.98 Aligned_cols=232 Identities=11% Similarity=0.035 Sum_probs=193.2
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCChHhHHHHHH
Q 009556 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGR-TLEADAIFQEMVCFGFNPKLRFYNILLR 155 (532)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~-~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (532)
...|+.+...+.+.|++++|++.|+++.+.. +.+...|+.+..++...|+ +++|++.|+++.+.. +.+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 4568888889999999999999999999875 5568899999999999997 999999999999876 557889999999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHc-CCChH
Q 009556 156 GFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRD-NGMWK 234 (532)
Q Consensus 156 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~~~~~ 234 (532)
++.+.|++++|+..|+++.+... .+...|..+..++.+.|++++|+..|+++++.... +...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 99999999999999999998754 57889999999999999999999999999987543 77888888888888 66657
Q ss_pred HH-----HHHHHHHHHcCCCCCHHHHHHHHHHHhccC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC------
Q 009556 235 KA-----VGIVEEIREMGLSLDRQIYNSIIDTFGKYG--ELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAG------ 301 (532)
Q Consensus 235 ~a-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g------ 301 (532)
+| +..+++.++.. +-+...|+.+...+.+.| ++++|++.+.++ +. .+.+...+..+...|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccc
Confidence 77 47788887765 346778888888888877 588888888887 33 3346677788888888764
Q ss_pred ---CHHHHHHHHHHH-HH
Q 009556 302 ---DVAKALELFTQM-QE 315 (532)
Q Consensus 302 ---~~~~A~~~~~~m-~~ 315 (532)
..++|+++++++ .+
T Consensus 330 ~~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 330 KEDILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 257888888887 54
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.60 E-value=4.9e-12 Score=115.27 Aligned_cols=223 Identities=13% Similarity=0.011 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 009556 252 RQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCK----AGDVAKALELFTQMQEQGFYPDPKIFIT 327 (532)
Q Consensus 252 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 327 (532)
...+..+...|...|++++|.+.|++..+. .+...+..+...|.. .+++++|++.|++..+.+ +...+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 344444555555555555555555555542 233445555555555 555555555555555543 4445555
Q ss_pred HHHHHHc----cCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHh----cCCcccHHHHHHHHHHcCCCCCHHHHHHHH
Q 009556 328 IISCLGE----LGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQ----YGRFRDPEECIAALKLEGLQPSGSMFCILA 399 (532)
Q Consensus 328 ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 399 (532)
+...+.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+.
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 153 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG 153 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHH
Confidence 5555555 556666666666555543 45555556666666 666666666666666544 345556666
Q ss_pred HHHHh----cCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009556 400 NAYAQ----QGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGV----AGKYKEALSVYHLMKDIGISPDLVTYSTLMKA 471 (532)
Q Consensus 400 ~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 471 (532)
..|.. .+++++|.+.+++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..+...
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~ 227 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAM 227 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHH
Confidence 66666 677777777777776653 45666777777777 788888888888877754 25566777777
Q ss_pred HHh----cCCcChHHHHHHHHHhCC
Q 009556 472 FIR----AKKFHKVPEIYKQMESSG 492 (532)
Q Consensus 472 ~~~----~g~~~~a~~~~~~m~~~g 492 (532)
|.. .+++++|.+.+++..+.|
T Consensus 228 ~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 228 QYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHcCCCcccCHHHHHHHHHHHHHcC
Confidence 777 788888888888887754
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.60 E-value=7e-13 Score=119.28 Aligned_cols=200 Identities=10% Similarity=-0.013 Sum_probs=133.3
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHH
Q 009556 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (532)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (532)
...|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4667788888888899999999998888764 4567778888888888888888888888887664 3456677777777
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHH
Q 009556 157 FLKKGLLGLGSRLLMVMEDMGICR-NQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKK 235 (532)
Q Consensus 157 ~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 235 (532)
+...|++++|.+.|+++.+.+..| +...+..+...+...|++++|.+.+++..+... .+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHH
Confidence 777788888877777776622223 345666666667777777777777766665431 134555555556666666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 009556 236 AVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQ 280 (532)
Q Consensus 236 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 280 (532)
|...++.+.+.. +.+...+..+...+.+.|+.++|.+.++++.+
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 666666555442 23444555555555555555555555555544
No 47
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.59 E-value=8.2e-13 Score=116.35 Aligned_cols=200 Identities=8% Similarity=-0.108 Sum_probs=111.4
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHH
Q 009556 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (532)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (532)
...|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 4456666667777777777777777766653 3445666666777777777777777777766543 3345566666666
Q ss_pred HHhc-CChhHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChH
Q 009556 157 FLKK-GLLGLGSRLLMVMEDMGICR-NQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWK 234 (532)
Q Consensus 157 ~~~~-g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 234 (532)
+... |++++|.+.++++.+.+..| +...+..+...+...|++++|...++++.+... .+...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCCHH
Confidence 6666 66666666666665521112 234555555555666666666666655554321 13444444445555555555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 009556 235 KAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQ 279 (532)
Q Consensus 235 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 279 (532)
+|...++++.+.....+...+..+...+...|+.++|..+++.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 555555554443211234444444444444444544444444443
No 48
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.59 E-value=3e-11 Score=122.52 Aligned_cols=427 Identities=9% Similarity=0.053 Sum_probs=296.2
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCCChHhH
Q 009556 75 FSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGR---TLEADAIFQEMVCFG-FNPKLRFY 150 (532)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~---~~~A~~~~~~~~~~g-~~~~~~~~ 150 (532)
-|...|..++..+.+.++++.|..+|+++... .+.+...|...+..-.+.++ ++.+.++|++..... .+|++..|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 47788999999999999999999999999987 46778889999999888888 999999999998754 24888889
Q ss_pred HHHHHHHHhcCCh--------hHHHHHHHHHHH-cCC-Cc-CHHHHHHHHHHHHh---------cCChHHHHHHHHHHHH
Q 009556 151 NILLRGFLKKGLL--------GLGSRLLMVMED-MGI-CR-NQETYEILLDYHVN---------AGRLDDTWLIINEMRS 210 (532)
Q Consensus 151 ~~li~~~~~~g~~--------~~A~~~~~~m~~-~~~-~~-~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~ 210 (532)
...+....+.++. +...++|+.... .|. .+ +...|...+..... .++.+.+..+|++...
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 8888777666654 334577877654 355 44 35688888876543 3457788899999885
Q ss_pred CCCCcCHHhHHHHHHHHHc-------------CCChHHHHHHHHHHHHc--CCC---------------C-----C---H
Q 009556 211 KGFQLNSFVYGKVIGLYRD-------------NGMWKKAVGIVEEIREM--GLS---------------L-----D---R 252 (532)
Q Consensus 211 ~~~~~~~~~~~~ll~~~~~-------------~~~~~~a~~~~~~~~~~--~~~---------------~-----~---~ 252 (532)
.....-..+|......-.. ..+++.|...+.++... ++. | + .
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql 302 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQL 302 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHH
Confidence 3222122333222211111 11233444455443221 111 1 0 2
Q ss_pred HHHHHHHHHHhccC-------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHCCCCCCHHH
Q 009556 253 QIYNSIIDTFGKYG-------ELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKAL-ELFTQMQEQGFYPDPKI 324 (532)
Q Consensus 253 ~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~~~~~~~~~ 324 (532)
..|...+..--..+ ..+.+..+|++.... .+-+...|-..+.-+...|+.++|. ++|++.... .+.+...
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~L 380 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHH
Confidence 34555555433322 123456678777664 3336778888888888899999997 999998864 3446666
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcC----------CCC-----------CHhHHHHHHHHHHhcCCcccHHHHHHHH
Q 009556 325 FITIISCLGELGKWDVIKKNFENMKDRG----------HGK-----------IGAIYAILVDIYGQYGRFRDPEECIAAL 383 (532)
Q Consensus 325 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~----------~~~-----------~~~~~~~li~~~~~~g~~~~a~~~~~~~ 383 (532)
+...+....+.|+++.|..+|+.+.... .+. ...+|...+....+.|..+.|..+|...
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7778888889999999999999987641 121 2346888888888899999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--
Q 009556 384 KLEGLQPSGSMFCILANAYAQQ-GLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISP-- 460 (532)
Q Consensus 384 ~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-- 460 (532)
.+.........|...+..-.+. ++.+.|.++|+...+. .+-+...|...+......|+.+.|..+|++.......+
T Consensus 461 ~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~ 539 (679)
T 4e6h_A 461 RRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHL 539 (679)
T ss_dssp HHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTH
T ss_pred HHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHH
Confidence 8761112233444333333344 4589999999998876 34466777888888888999999999999998764322
Q ss_pred CHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 009556 461 DLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSAL 507 (532)
Q Consensus 461 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~a~ 507 (532)
....|..++..-.+.|+.+.+.++.+++.+ ..|+......+.+-+
T Consensus 540 ~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~--~~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 540 LKMIFQKVIFFESKVGSLNSVRTLEKRFFE--KFPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHHHHHH--HSTTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCcHHHHHHHHh
Confidence 345788888888899999999999999998 456655666665444
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.59 E-value=1.4e-13 Score=123.11 Aligned_cols=205 Identities=13% Similarity=0.112 Sum_probs=133.6
Q ss_pred CCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHH
Q 009556 72 GEEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYN 151 (532)
Q Consensus 72 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~ 151 (532)
........|..+...+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+.
T Consensus 18 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 95 (243)
T 2q7f_A 18 GSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYY 95 (243)
T ss_dssp ------------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHH
Confidence 345566778888888999999999999999998764 5567888889999999999999999999988765 45677888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCC
Q 009556 152 ILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNG 231 (532)
Q Consensus 152 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 231 (532)
.+...+...|++++|.+.++++.+... .+...+..+...+.+.|++++|.+.++++.+... .+...+..+...+...|
T Consensus 96 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 173 (243)
T 2q7f_A 96 GAGNVYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEG 173 (243)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcC
Confidence 888888888999999888888877643 4566777777888888888888888887766532 24556666666677777
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 009556 232 MWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQE 281 (532)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 281 (532)
++++|...++++.+.. +.+..++..+...|.+.|++++|.+.++++.+.
T Consensus 174 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 174 MLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp CCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 7777777776666553 234555666666666666666666666665543
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.58 E-value=1.5e-12 Score=117.03 Aligned_cols=201 Identities=13% Similarity=0.008 Sum_probs=162.1
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 009556 112 SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDY 191 (532)
Q Consensus 112 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 191 (532)
...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+++.+... .+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHH
Confidence 4567788888899999999999999998765 45778888999999999999999999999887643 467788888889
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCc-CHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 009556 192 HVNAGRLDDTWLIINEMRSKGFQL-NSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVE 270 (532)
Q Consensus 192 ~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 270 (532)
+...|++++|.+.++++...+..| +...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999887733344 45667777888888888888888888888764 3357778888888888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 009556 271 ALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQ 316 (532)
Q Consensus 271 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 316 (532)
|...++++.+... .+...+..+...+...|++++|.+.++++.+.
T Consensus 194 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 8888888776533 36667777788888888888888888888765
No 51
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.58 E-value=1.9e-12 Score=113.99 Aligned_cols=204 Identities=10% Similarity=-0.077 Sum_probs=141.9
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHH
Q 009556 110 PSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILL 189 (532)
Q Consensus 110 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 189 (532)
.+...+..+...+...|++++|.+.++.+.+.. +.+...+..+...+...|++++|.+.++++.+... .+..++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~ 83 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHH
Confidence 345667777888888888888888888887654 44567777788888888888888888888776543 4566777777
Q ss_pred HHHHhc-CChHHHHHHHHHHHHCCCCc-CHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 009556 190 DYHVNA-GRLDDTWLIINEMRSKGFQL-NSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGE 267 (532)
Q Consensus 190 ~~~~~~-~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 267 (532)
..+... |++++|...++++.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCC
Confidence 777888 88888888888777632223 24566667777777777777777777776653 2346666677777777777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 009556 268 LVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQ 316 (532)
Q Consensus 268 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 316 (532)
+++|...+++..+.....+...+..+...+...|+.++|..+++.+.+.
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 7777777777665432135555666666666777777777777766543
No 52
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.58 E-value=5e-13 Score=121.73 Aligned_cols=234 Identities=13% Similarity=0.029 Sum_probs=162.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hHhHHHHHHH
Q 009556 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPK--LRFYNILLRG 156 (532)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~ 156 (532)
.+......+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|++.+++..+.+..++ ...|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34556677888899999999999888764 44566788888888889999999999988887431122 2337788888
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHH
Q 009556 157 FLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKA 236 (532)
Q Consensus 157 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 236 (532)
+...|++++|.+.|++..+... .+...|..+...|...|++++|.+.|++..+.. +.+...+..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888877543 455678888888888888888888888877652 22455666666344444578888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCC---HHHHHHHHHHHHhCC-CCCC------HHHHHHHHHHHHHcCCHHHH
Q 009556 237 VGIVEEIREMGLSLDRQIYNSIIDTFGKYGE---LVEALEVFEKMQQES-IRPD------IVTWNSLIRWHCKAGDVAKA 306 (532)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~-~~p~------~~~~~~li~~~~~~g~~~~A 306 (532)
.+.++++.+.. +.+...+..+...+...|+ .++|...+++..+.. ..|+ ...|..+...|...|++++|
T Consensus 162 ~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 162 DSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 88888777764 2345666666666666666 666666666655421 0112 24556666677777777777
Q ss_pred HHHHHHHHHC
Q 009556 307 LELFTQMQEQ 316 (532)
Q Consensus 307 ~~~~~~m~~~ 316 (532)
.+.+++..+.
T Consensus 241 ~~~~~~al~~ 250 (272)
T 3u4t_A 241 DAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 7777777654
No 53
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.57 E-value=1.1e-13 Score=126.37 Aligned_cols=247 Identities=13% Similarity=-0.027 Sum_probs=183.4
Q ss_pred HcCChHHHHHHHHHHHHcCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhH
Q 009556 89 KLGDIDEAMALLAQMQALGF---HPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGL 165 (532)
Q Consensus 89 ~~g~~~~A~~~~~~m~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 165 (532)
..|++++|++.|+++.+... +.+..++..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 34889999999999987632 1246678889999999999999999999999875 4578899999999999999999
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHH
Q 009556 166 GSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIRE 245 (532)
Q Consensus 166 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 245 (532)
|.+.|++..+... .+...|..+...+.+.|++++|.+.|+++.+.. |+.......+..+...|++++|...+++...
T Consensus 96 A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 9999999988643 467789999999999999999999999998763 4444444455555677899999999987776
Q ss_pred cCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 009556 246 MGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRP---DIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDP 322 (532)
Q Consensus 246 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 322 (532)
.. +++...+. ++..+...++.++|.+.+++..+..... +...|..+...|...|++++|...|++..+.. |+.
T Consensus 173 ~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~ 248 (275)
T 1xnf_A 173 KS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN 248 (275)
T ss_dssp HS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT
T ss_pred cC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh
Confidence 53 23333343 6667778888888888888876542110 14667778888888888888888888887653 322
Q ss_pred HHHHHHHHHHHccCCHHHHHHHH
Q 009556 323 KIFITIISCLGELGKWDVIKKNF 345 (532)
Q Consensus 323 ~~~~~ll~~~~~~~~~~~a~~~~ 345 (532)
+.....++...|++++|.+.+
T Consensus 249 --~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 --FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CHHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHHhhHHHH
Confidence 122244555666666666554
No 54
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.56 E-value=1.3e-12 Score=124.19 Aligned_cols=249 Identities=9% Similarity=0.066 Sum_probs=190.9
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCC-hhHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 009556 112 SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGL-LGLGSRLLMVMEDMGICRNQETYEILLD 190 (532)
Q Consensus 112 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~li~ 190 (532)
...|..+...+...|++++|++.++++++.. +.+...|+.+..++.+.|+ +++|+..|+++.+... .+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
Confidence 4567788888889999999999999999876 5577889999999999996 9999999999988654 56788999999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-cCCHH
Q 009556 191 YHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGK-YGELV 269 (532)
Q Consensus 191 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~ 269 (532)
++...|++++|+..|+++.+.... +...|..+..++...|++++|+..++++++.. +.+...|+.+...+.+ .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 999999999999999999887433 77888888889999999999999999998875 3477888888888888 55546
Q ss_pred HH-----HHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC------
Q 009556 270 EA-----LEVFEKMQQESIRPDIVTWNSLIRWHCKAG--DVAKALELFTQMQEQGFYPDPKIFITIISCLGELG------ 336 (532)
Q Consensus 270 ~A-----~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~------ 336 (532)
+| ++.|++....... +...|+.+...+...| ++++|++.+.++ +. .+.+...+..+...+.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccc
Confidence 66 4777777664322 5667777777777777 578888888777 32 3445667777777777653
Q ss_pred ---CHHHHHHHHHHH-HhcCCCCCHhHHHHHHHHHH
Q 009556 337 ---KWDVIKKNFENM-KDRGHGKIGAIYAILVDIYG 368 (532)
Q Consensus 337 ---~~~~a~~~~~~~-~~~~~~~~~~~~~~li~~~~ 368 (532)
..++|.++++++ .+.+ +.....|..+...+.
T Consensus 330 ~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKD-TIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHHH
Confidence 247788888777 4443 334455555544443
No 55
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.56 E-value=1.4e-12 Score=118.70 Aligned_cols=234 Identities=11% Similarity=0.010 Sum_probs=120.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcC--HHHHHHHHHH
Q 009556 114 SYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRN--QETYEILLDY 191 (532)
Q Consensus 114 ~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~ 191 (532)
.+......+...|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.+++..+.+..++ ...|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34455566666777777777777766653 33444666666666666777777766666665321111 2235666666
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHH
Q 009556 192 HVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEA 271 (532)
Q Consensus 192 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 271 (532)
+...|++++|.+.|++..+.... +..++..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666554221 34455555555666666666666665555442 22344444444122223355555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHccCCHHHH
Q 009556 272 LEVFEKMQQESIRPDIVTWNSLIRWHCKAGD---VAKALELFTQMQEQG-FYPD------PKIFITIISCLGELGKWDVI 341 (532)
Q Consensus 272 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~-~~~~------~~~~~~ll~~~~~~~~~~~a 341 (532)
.+.|++..+... .+...+..+...+...|+ +++|...+++..+.. -.|+ ...+..+...+...|++++|
T Consensus 162 ~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 162 DSSFVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 555555554321 124444445555555554 445555555544321 0111 12333344444444444444
Q ss_pred HHHHHHHHhc
Q 009556 342 KKNFENMKDR 351 (532)
Q Consensus 342 ~~~~~~~~~~ 351 (532)
...++++.+.
T Consensus 241 ~~~~~~al~~ 250 (272)
T 3u4t_A 241 DAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 4444444443
No 56
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.53 E-value=1.1e-12 Score=117.22 Aligned_cols=201 Identities=12% Similarity=0.009 Sum_probs=124.7
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 009556 111 SSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLD 190 (532)
Q Consensus 111 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 190 (532)
....|..+...+...|++++|...|+++.+.. +.+...+..+...+.+.|++++|.+.|+++.+... .+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHH
Confidence 44566677777778888888888888887654 44677777788888888888888888888776543 45667777777
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 009556 191 YHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVE 270 (532)
Q Consensus 191 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 270 (532)
.+...|++++|.+.++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 77777888888887777766532 255666667777777777777777777776653 2355666666667777777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 009556 271 ALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQ 316 (532)
Q Consensus 271 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 316 (532)
|...|++..+... .+..++..+...+...|++++|.+.++++.+.
T Consensus 178 A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 7777766655422 24556666666666777777777777666654
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.52 E-value=5.7e-13 Score=129.00 Aligned_cols=299 Identities=17% Similarity=0.065 Sum_probs=195.1
Q ss_pred CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC
Q 009556 74 EFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPS----SISYASLIEALASVGRTLEADAIFQEMVCF----GFNP 145 (532)
Q Consensus 74 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----g~~~ 145 (532)
+.....+......+.+.|++++|+..|+++.+.+ +.+ ..++..+...+...|++++|...+++..+. +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 3455667777888899999999999999998874 333 357888889999999999999999887542 2122
Q ss_pred -ChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-c----CHHHHHHHHHHHHhcCC--------------------hH
Q 009556 146 -KLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGIC-R----NQETYEILLDYHVNAGR--------------------LD 199 (532)
Q Consensus 146 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~----~~~~~~~li~~~~~~~~--------------------~~ 199 (532)
...++..+...|...|++++|...+++..+.... + ...++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 2457788888999999999999998887653110 1 13477888888888888 88
Q ss_pred HHHHHHHHHHHC----CCCc-CHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCCHH
Q 009556 200 DTWLIINEMRSK----GFQL-NSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGL-SLD----RQIYNSIIDTFGKYGELV 269 (532)
Q Consensus 200 ~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~ 269 (532)
+|.+.+++.... +..+ ...++..+...+...|++++|...+++..+... .++ ..++..+...|...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 888888776432 1111 234566677777788888888888777654311 011 235666777777777877
Q ss_pred HHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCCHH
Q 009556 270 EALEVFEKMQQE----SIRP-DIVTWNSLIRWHCKAGDVAKALELFTQMQEQGF-YPD----PKIFITIISCLGELGKWD 339 (532)
Q Consensus 270 ~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~----~~~~~~ll~~~~~~~~~~ 339 (532)
+|...+++..+. +..+ ...++..+...|...|++++|.+.+++..+... ..+ ..++..+...+...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 777777766532 1000 134566667777777777777777776653210 111 345555666666777777
Q ss_pred HHHHHHHHHHhc----CC-CCCHhHHHHHHHHHHhcCCc
Q 009556 340 VIKKNFENMKDR----GH-GKIGAIYAILVDIYGQYGRF 373 (532)
Q Consensus 340 ~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~ 373 (532)
+|...+++..+. +. +....++..+...+...|+.
T Consensus 325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 777766665432 10 11133444455555555544
No 58
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.50 E-value=7e-13 Score=120.89 Aligned_cols=225 Identities=10% Similarity=-0.044 Sum_probs=178.6
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHH
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (532)
+...|..+...+...|++++|+..|+++.+.. +.+..+|..+...+...|++++|.+.|+++.+.. +.+..++..+..
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~ 119 (275)
T 1xnf_A 42 RAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGI 119 (275)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHH
Confidence 46788899999999999999999999999875 5578899999999999999999999999999875 457889999999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHH
Q 009556 156 GFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKK 235 (532)
Q Consensus 156 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 235 (532)
.|.+.|++++|.+.|+++.+.. |+.......+..+...|++++|...+++..... +++...+ .++..+...++.++
T Consensus 120 ~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~ 195 (275)
T 1xnf_A 120 ALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQT 195 (275)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHH
Confidence 9999999999999999998854 444445555566677899999999998887653 2333333 46777788888999
Q ss_pred HHHHHHHHHHcCCC---CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 009556 236 AVGIVEEIREMGLS---LDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELF 310 (532)
Q Consensus 236 a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 310 (532)
|.+.++...+.... .+...+..+...|.+.|++++|...|++..+.. |+. +.....++...|++++|++.+
T Consensus 196 a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 196 LMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 99999888654321 125788889999999999999999999998763 322 333455677788888887766
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.50 E-value=1.5e-12 Score=126.36 Aligned_cols=238 Identities=13% Similarity=0.048 Sum_probs=154.2
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH----hHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCC
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSS----ISYASLIEALASVGRTLEADAIFQEMVCF----GF-NPK 146 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~~~~~----g~-~~~ 146 (532)
....+..+...+...|++++|+..|+++.+.+ +.+. ..+..+...+...|++++|.+.+++..+. +. +..
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 34455667778899999999999999998874 3333 47888889999999999999999988753 11 224
Q ss_pred hHhHHHHHHHHHhcCChhHHHHHHHHHHHc----C-CCcCHHHHHHHHHHHHhcCC-----------------hHHHHHH
Q 009556 147 LRFYNILLRGFLKKGLLGLGSRLLMVMEDM----G-ICRNQETYEILLDYHVNAGR-----------------LDDTWLI 204 (532)
Q Consensus 147 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~-~~~~~~~~~~li~~~~~~~~-----------------~~~a~~~ 204 (532)
..++..+...|...|++++|...+++..+. + .+....++..+...|...|+ +++|.+.
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 567788888999999999999998887653 1 11234467778888888888 7777777
Q ss_pred HHHHHHC----CCCc-CHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhccCCHHHHHHH
Q 009556 205 INEMRSK----GFQL-NSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLS-LD----RQIYNSIIDTFGKYGELVEALEV 274 (532)
Q Consensus 205 ~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~ 274 (532)
+++..+. +..+ ...++..+...+...|++++|...+++..+.... .+ ...+..+...|...|++++|...
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 7765432 1111 2235556666677777777777777666543100 01 12455556666666666666666
Q ss_pred HHHHHhCCC--C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009556 275 FEKMQQESI--R---PDIVTWNSLIRWHCKAGDVAKALELFTQMQ 314 (532)
Q Consensus 275 ~~~m~~~~~--~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 314 (532)
+++..+... . ....++..+...+...|++++|.+.+++..
T Consensus 286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 330 (411)
T 4a1s_A 286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL 330 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 655543200 0 012344555555556666666666555544
No 60
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.49 E-value=5.5e-11 Score=110.32 Aligned_cols=235 Identities=14% Similarity=0.084 Sum_probs=168.2
Q ss_pred hhHHHHHHHHHHc----CCh----HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh-------cCCH-------HHHHHHH
Q 009556 78 NSYNKSIQYCCKL----GDI----DEAMALLAQMQALGFHPSSISYASLIEALAS-------VGRT-------LEADAIF 135 (532)
Q Consensus 78 ~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-------~~~~-------~~A~~~~ 135 (532)
..|...+..-.+. ++. ++|+.+|+++.... +.++..|..++..+.. .|++ ++|..+|
T Consensus 9 ~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~ 87 (308)
T 2ond_A 9 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 87 (308)
T ss_dssp HHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHH
Confidence 4566666654443 233 68888999988764 5677888888877763 4775 8899999
Q ss_pred HHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 009556 136 QEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQE-TYEILLDYHVNAGRLDDTWLIINEMRSKGFQ 214 (532)
Q Consensus 136 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 214 (532)
++..+.-.+.+...|..++..+.+.|++++|.++|++..+... .+.. .|..++..+.+.|++++|..+|++..+...
T Consensus 88 ~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p- 165 (308)
T 2ond_A 88 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIED-IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR- 165 (308)
T ss_dssp HHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSS-SCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccc-cCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-
Confidence 9988731144566888888888889999999999998887432 1233 788888888888889999999888887643
Q ss_pred cCHHhHHHHHHHH-HcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC-CCC--CHHHH
Q 009556 215 LNSFVYGKVIGLY-RDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQES-IRP--DIVTW 290 (532)
Q Consensus 215 ~~~~~~~~ll~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p--~~~~~ 290 (532)
.+...|....... ...|++++|.++|+...+.. +.+...|..++..+.+.|+.++|..+|++..... ..| ....|
T Consensus 166 ~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~ 244 (308)
T 2ond_A 166 TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW 244 (308)
T ss_dssp CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 2344443333322 23688888888888877653 3367777888888888888888888888887752 333 45677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 009556 291 NSLIRWHCKAGDVAKALELFTQMQEQ 316 (532)
Q Consensus 291 ~~li~~~~~~g~~~~A~~~~~~m~~~ 316 (532)
..++....+.|+.+.|..+++++.+.
T Consensus 245 ~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 245 ARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777777788888888888877764
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.48 E-value=1.2e-12 Score=126.64 Aligned_cols=303 Identities=14% Similarity=0.053 Sum_probs=170.6
Q ss_pred ChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHH
Q 009556 146 KLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRN----QETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYG 221 (532)
Q Consensus 146 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 221 (532)
....+......+...|++++|...|++..+... .+ ...|..+...+...|++++|...+++.....
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------- 77 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA--------- 77 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH---------
Confidence 334445555556666666666666666655422 11 2345555555555666666665555543210
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHH
Q 009556 222 KVIGLYRDNGMWKKAVGIVEEIREMGLS-LDRQIYNSIIDTFGKYGELVEALEVFEKMQQESI-RPD----IVTWNSLIR 295 (532)
Q Consensus 222 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~ 295 (532)
...+.. ....++..+...|...|++++|...+++..+... .++ ..++..+..
T Consensus 78 ----------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 135 (406)
T 3sf4_A 78 ----------------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGN 135 (406)
T ss_dssp ----------------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ----------------------HhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 000000 0122344444455555555555555544432100 001 234555566
Q ss_pred HHHHcCC--------------------HHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 009556 296 WHCKAGD--------------------VAKALELFTQMQEQ----GFYP-DPKIFITIISCLGELGKWDVIKKNFENMKD 350 (532)
Q Consensus 296 ~~~~~g~--------------------~~~A~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 350 (532)
.|...|+ +++|.+.+++..+. +..+ ...++..+...+...|++++|...+++..+
T Consensus 136 ~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 215 (406)
T 3sf4_A 136 VYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 215 (406)
T ss_dssp HHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHH
T ss_pred HHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6666666 66666666654321 1111 123455566666777777777777766653
Q ss_pred cCC-----CCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHhcc
Q 009556 351 RGH-----GKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQ-PS----GSMFCILANAYAQQGLCEQTVKVLQLMEP 420 (532)
Q Consensus 351 ~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 420 (532)
... .....++..+...|...|++++|...+++....... ++ ..++..+...|...|++++|.+.+++..+
T Consensus 216 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 216 IAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 210 011236667777778888888888887776542110 11 45677788888899999999988887754
Q ss_pred CCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCcCh
Q 009556 421 EGI-EPN----LVMLNVLINAFGVAGKYKEALSVYHLMKDI----GISP-DLVTYSTLMKAFIRAKKFHK 480 (532)
Q Consensus 421 ~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~ 480 (532)
... .++ ..++..+...|...|++++|.+.+++..+. +..+ ...++..+...+...|+...
T Consensus 296 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 296 IAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 310 111 457778888999999999999999887642 2222 23466777788888887643
No 62
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.48 E-value=1.5e-12 Score=126.46 Aligned_cols=201 Identities=16% Similarity=0.130 Sum_probs=126.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----HhHHHHHHHHHhcCChhHHHHHHHHHHHc----C-CCcCHH
Q 009556 113 ISYASLIEALASVGRTLEADAIFQEMVCFGFNPKL----RFYNILLRGFLKKGLLGLGSRLLMVMEDM----G-ICRNQE 183 (532)
Q Consensus 113 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~-~~~~~~ 183 (532)
..+..+...+...|++++|.+.|+++.+.+ +.+. ..+..+...|...|++++|...+++..+. + .+....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 345566778889999999999999998864 2333 47888889999999999999999887653 1 112345
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC----CC-CcCHHhHHHHHHHHHcCCC-----------------hHHHHHHHH
Q 009556 184 TYEILLDYHVNAGRLDDTWLIINEMRSK----GF-QLNSFVYGKVIGLYRDNGM-----------------WKKAVGIVE 241 (532)
Q Consensus 184 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~~~~~ll~~~~~~~~-----------------~~~a~~~~~ 241 (532)
.+..+...|...|++++|...+++..+. +- .....++..+...+...|+ +++|.+.++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 7788888888899999999888877543 11 1123456666677777777 666666666
Q ss_pred HHHHc----CC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHH
Q 009556 242 EIREM----GL-SLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESI-RPD----IVTWNSLIRWHCKAGDVAKALELFT 311 (532)
Q Consensus 242 ~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~ 311 (532)
+..+. +. .....++..+...|...|++++|.+.+++..+... .++ ...+..+...|...|++++|.+.++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 55432 10 11123455555555666666666666555443200 001 1234445555555555555555555
Q ss_pred HHH
Q 009556 312 QMQ 314 (532)
Q Consensus 312 ~m~ 314 (532)
+..
T Consensus 288 ~al 290 (411)
T 4a1s_A 288 RTL 290 (411)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.47 E-value=3e-12 Score=120.19 Aligned_cols=234 Identities=17% Similarity=0.086 Sum_probs=138.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CChHh
Q 009556 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPS----SISYASLIEALASVGRTLEADAIFQEMVCF----GFN-PKLRF 149 (532)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----g~~-~~~~~ 149 (532)
.+......+...|++++|+..|+++.+.. +.+ ...+..+...+...|++++|.+.+++..+. +.. ....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 44556677888999999999999988874 233 356778888999999999999998887642 211 23456
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCC-cC----HHHHHHHHHHHHhcCC--------------------hHHHHHH
Q 009556 150 YNILLRGFLKKGLLGLGSRLLMVMEDMGIC-RN----QETYEILLDYHVNAGR--------------------LDDTWLI 204 (532)
Q Consensus 150 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~~~--------------------~~~a~~~ 204 (532)
+..+...+...|++++|...+++..+.... ++ ..++..+...+...|+ +++|.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 778888888889999998888876543110 11 3367777777777787 7777777
Q ss_pred HHHHHHC----CCCc-CHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhccCCHHHHHHH
Q 009556 205 INEMRSK----GFQL-NSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLS-LD----RQIYNSIIDTFGKYGELVEALEV 274 (532)
Q Consensus 205 ~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~ 274 (532)
+++.... +..+ ...++..+...+...|++++|.+.+++..+.... ++ ..++..+...+...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7665331 1111 1234455555566666666666666555432100 01 12444444555555555555555
Q ss_pred HHHHHhCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009556 275 FEKMQQESI-RPD----IVTWNSLIRWHCKAGDVAKALELFTQM 313 (532)
Q Consensus 275 ~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m 313 (532)
+++..+... ..+ ..++..+...+...|++++|...+++.
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 289 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 554432100 001 223344444444555555555544443
No 64
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.47 E-value=7.4e-10 Score=112.34 Aligned_cols=414 Identities=10% Similarity=0.082 Sum_probs=280.5
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCC---hhHHH
Q 009556 91 GDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGL---LGLGS 167 (532)
Q Consensus 91 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~ 167 (532)
....+.+..|++....+ +-|..+|..++..+.+.+.++.+..+|+.+...- +.....|...+..-.+.|. ++.+.
T Consensus 46 ~~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~ 123 (679)
T 4e6h_A 46 RDESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIE 123 (679)
T ss_dssp CCCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHH
T ss_pred cCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHH
Confidence 33455566667766665 6799999999999999999999999999999763 6677889999998889898 99999
Q ss_pred HHHHHHHHcC-CCcCHHHHHHHHHHHHhcCCh--------HHHHHHHHHHHH-CCC-CcC-HHhHHHHHHHHHc------
Q 009556 168 RLLMVMEDMG-ICRNQETYEILLDYHVNAGRL--------DDTWLIINEMRS-KGF-QLN-SFVYGKVIGLYRD------ 229 (532)
Q Consensus 168 ~~~~~m~~~~-~~~~~~~~~~li~~~~~~~~~--------~~a~~~~~~m~~-~~~-~~~-~~~~~~ll~~~~~------ 229 (532)
++|++..... ..|++..|...+....+.++. +...++|+.... .|. .++ ...|...+.....
T Consensus 124 ~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~ 203 (679)
T 4e6h_A 124 PVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNK 203 (679)
T ss_dssp HHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCc
Confidence 9999998764 247888999988877665553 334477777553 466 554 4677777765442
Q ss_pred ---CCChHHHHHHHHHHHHcCCCCCHHHHHHH---HHHHh----------ccCCHHHHHHHHHHHHh--CCCC-------
Q 009556 230 ---NGMWKKAVGIVEEIREMGLSLDRQIYNSI---IDTFG----------KYGELVEALEVFEKMQQ--ESIR------- 284 (532)
Q Consensus 230 ---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---i~~~~----------~~g~~~~A~~~~~~m~~--~~~~------- 284 (532)
.++++.+..+|+.++......-..+|... ...+. ...+++.|...+.++.. .++.
T Consensus 204 ~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~ 283 (679)
T 4e6h_A 204 FEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITL 283 (679)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSS
T ss_pred HHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccc
Confidence 34567888999998864222122333222 21110 01233445555554332 1111
Q ss_pred --------C-----C---HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 009556 285 --------P-----D---IVTWNSLIRWHCKAG-------DVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVI 341 (532)
Q Consensus 285 --------p-----~---~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 341 (532)
| + ...|...+.---..+ ..+.+..+|++.... .+-+...|...+..+...|+.+.|
T Consensus 284 ~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a 362 (679)
T 4e6h_A 284 NQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTV 362 (679)
T ss_dssp TTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTH
T ss_pred ccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHH
Confidence 1 1 234555554332222 124456778887765 344677888888888888999999
Q ss_pred H-HHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcC---------CCCC------------HHHHHHHH
Q 009556 342 K-KNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEG---------LQPS------------GSMFCILA 399 (532)
Q Consensus 342 ~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---------~~~~------------~~~~~~li 399 (532)
. .++++..... |.+...|-..+....+.|++++|.++|+.+.... ..|+ ..+|...+
T Consensus 363 ~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~ 441 (679)
T 4e6h_A 363 ITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYM 441 (679)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHH
Confidence 6 9999998753 5677778889999999999999999999987631 0132 34688888
Q ss_pred HHHHhcCCHHHHHHHHHHhccC-CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 009556 400 NAYAQQGLCEQTVKVLQLMEPE-GIEPNLVMLNVLINAFGVA-GKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKK 477 (532)
Q Consensus 400 ~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 477 (532)
....+.|+.+.|..+|..+.+. + .+....|...+..-.+. ++.+.|.++|+...+. .+-+...|...+......|+
T Consensus 442 ~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~ 519 (679)
T 4e6h_A 442 NTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNE 519 (679)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCC
Confidence 8888899999999999999865 2 22233443333333344 4599999999999876 44467777888888888999
Q ss_pred cChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhh
Q 009556 478 FHKVPEIYKQMESSGCTPDRKARQILQSALVVLEQ 512 (532)
Q Consensus 478 ~~~a~~~~~~m~~~g~~p~~~t~~~l~~a~~~~~~ 512 (532)
.+.|..+|++...... +......+...+..++.
T Consensus 520 ~~~AR~lferal~~~~--~~~~~~~lw~~~~~fE~ 552 (679)
T 4e6h_A 520 ESQVKSLFESSIDKIS--DSHLLKMIFQKVIFFES 552 (679)
T ss_dssp HHHHHHHHHHHTTTSS--STTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHH
Confidence 9999999999987543 22233345555555443
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.45 E-value=3.2e-11 Score=102.58 Aligned_cols=167 Identities=14% Similarity=0.047 Sum_probs=108.5
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHH
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (532)
++..|..+...|.+.|++++|++.|++..+.. +.+..++..+..++.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 44567777777777777777777777777664 4456677777777777777777777777776554 345556666666
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHH
Q 009556 156 GFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKK 235 (532)
Q Consensus 156 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 235 (532)
.+...++++.|...+.+...... .+...+..+...+.+.|++++|++.|++..+.... +..++..+..++.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence 66777777777777776665432 34556666666666666666666666666554321 45555666666666666666
Q ss_pred HHHHHHHHHHc
Q 009556 236 AVGIVEEIREM 246 (532)
Q Consensus 236 a~~~~~~~~~~ 246 (532)
|.+.|++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 66666665553
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.43 E-value=7.9e-12 Score=117.29 Aligned_cols=275 Identities=14% Similarity=0.068 Sum_probs=151.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----hHhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCC-cCHHH
Q 009556 114 SYASLIEALASVGRTLEADAIFQEMVCFGFNPK----LRFYNILLRGFLKKGLLGLGSRLLMVMEDM----GIC-RNQET 184 (532)
Q Consensus 114 ~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~~~ 184 (532)
.+......+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|.+.+++..+. +.. ....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 44555677788899999999999888764 223 356778888888889999988888876542 111 12446
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCC-cC----HHhHHHHHHHHHcCCC--------------------hHHHHHH
Q 009556 185 YEILLDYHVNAGRLDDTWLIINEMRSKGFQ-LN----SFVYGKVIGLYRDNGM--------------------WKKAVGI 239 (532)
Q Consensus 185 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~ll~~~~~~~~--------------------~~~a~~~ 239 (532)
+..+...+...|++++|.+.+++..+.... ++ ..++..+...+...|+ +++|.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 777777888888888888887776542100 11 2355566666666666 6666666
Q ss_pred HHHHHHc----CC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHH
Q 009556 240 VEEIREM----GL-SLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESI-RPD----IVTWNSLIRWHCKAGDVAKALEL 309 (532)
Q Consensus 240 ~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~ 309 (532)
+++..+. +. .....++..+...+...|++++|.+.+++..+... .++ ..++..+...+...|++++|.+.
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5554321 10 01122344444555555555555555554432100 001 11344444444445555555544
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCC-CCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCC
Q 009556 310 FTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGH-GKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGL 388 (532)
Q Consensus 310 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 388 (532)
+++..+... ..+. .....++..+...|...|++++|...+++..+...
T Consensus 246 ~~~al~~~~-------------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 246 YKKTLLLAR-------------------------------QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHHHHHHHH-------------------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-------------------------------hhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 444332100 0000 00133444555555555666665555555433210
Q ss_pred -----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcc
Q 009556 389 -----QPSGSMFCILANAYAQQGLCEQTVKVLQLMEP 420 (532)
Q Consensus 389 -----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 420 (532)
.....++..+...|...|++++|.+.+++..+
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 00123456666777777777777777776654
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.42 E-value=4e-11 Score=115.11 Aligned_cols=225 Identities=11% Similarity=-0.037 Sum_probs=121.9
Q ss_pred HHcCChHHHHHHHHHHHHcC--CCCCH--hHHHHHHHH--HHhcCCHHHHH-----------HHHHHHHHCCCCCChHh-
Q 009556 88 CKLGDIDEAMALLAQMQALG--FHPSS--ISYASLIEA--LASVGRTLEAD-----------AIFQEMVCFGFNPKLRF- 149 (532)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~~--~~~~~--~~~~~li~~--~~~~~~~~~A~-----------~~~~~~~~~g~~~~~~~- 149 (532)
.+.+++++|..+++++.+.- +..|. ..|-.++.. ..-.++++.+. +.++.+.... .+...
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~~ 100 (383)
T 3ulq_A 23 IRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTGL 100 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchhH
Confidence 57899999999999986642 22333 333333322 12223344444 5666654321 11111
Q ss_pred -----HHHHHHHHHhcCChhHHHHHHHHHHHc----CCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----C
Q 009556 150 -----YNILLRGFLKKGLLGLGSRLLMVMEDM----GICR-NQETYEILLDYHVNAGRLDDTWLIINEMRSKGF-----Q 214 (532)
Q Consensus 150 -----~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-----~ 214 (532)
+......+...|++++|...|++..+. +-.+ ...+|..+...|...|++++|...+++..+.-. .
T Consensus 101 l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 180 (383)
T 3ulq_A 101 LEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN 180 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch
Confidence 122455566778888888888777653 1111 234667777777777777777777776643210 0
Q ss_pred c-CHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhccCCHHHHHHHHHHHHhC----CC-
Q 009556 215 L-NSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLS-LD----RQIYNSIIDTFGKYGELVEALEVFEKMQQE----SI- 283 (532)
Q Consensus 215 ~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~- 283 (532)
+ ...++..+...|...|++++|...+++..+.... .+ ..++..+...|...|++++|.+.|++..+. +.
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 260 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL 260 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc
Confidence 1 1235555666666666666666666665532100 01 124555555666666666666666555441 11
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009556 284 RPDIVTWNSLIRWHCKAGDVAKALELFTQMQ 314 (532)
Q Consensus 284 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 314 (532)
+....++..+...+.+.|++++|.+.+++..
T Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 261 PSLPQAYFLITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 2223445555555666666666666555544
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.42 E-value=2.3e-11 Score=116.88 Aligned_cols=227 Identities=7% Similarity=0.009 Sum_probs=107.8
Q ss_pred HHHcCCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhC--CC----CCCHHHHHHHH
Q 009556 226 LYRDNGMWKKAVGIVEEIREM----GLSL-DRQIYNSIIDTFGKYGELVEALEVFEKMQQE--SI----RPDIVTWNSLI 294 (532)
Q Consensus 226 ~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~----~p~~~~~~~li 294 (532)
.+...|++++|...+++..+. +-.+ ...++..+...|...|++++|...+++..+. .. .....+++.+.
T Consensus 112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 191 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA 191 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 344455555555555555432 1000 1234555555555555555555555554431 00 00123455555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhc----CC-CCCHhHHHHHH
Q 009556 295 RWHCKAGDVAKALELFTQMQEQGF-YPD----PKIFITIISCLGELGKWDVIKKNFENMKDR----GH-GKIGAIYAILV 364 (532)
Q Consensus 295 ~~~~~~g~~~~A~~~~~~m~~~~~-~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~li 364 (532)
..|...|++++|++.+++..+... .++ ..++..+...+...|++++|...+++..+. +. +....++..+.
T Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 271 (383)
T 3ulq_A 192 TNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLIT 271 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Confidence 666666666666666665543200 011 124455555566666666666666555541 11 22344455555
Q ss_pred HHHHhcCCcccHHHHHHHHHHcC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhccCCCCCCHHHHHHHHHHH
Q 009556 365 DIYGQYGRFRDPEECIAALKLEG----LQPSGSMFCILANAYAQQGL---CEQTVKVLQLMEPEGIEPNLVMLNVLINAF 437 (532)
Q Consensus 365 ~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 437 (532)
..|.+.|++++|...+++..+.. .+.....+..+...|...|+ +++|..++++.... +.....+..+...|
T Consensus 272 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~--~~~~~~~~~la~~y 349 (383)
T 3ulq_A 272 QIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLY--ADLEDFAIDVAKYY 349 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCH--HHHHHHHHHHHHHH
Confidence 55556666666655555543321 01111123344445555555 45555555544210 11223444555556
Q ss_pred HhcCCHHHHHHHHHHHH
Q 009556 438 GVAGKYKEALSVYHLMK 454 (532)
Q Consensus 438 ~~~g~~~~A~~~~~~m~ 454 (532)
...|++++|.+.+++..
T Consensus 350 ~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 350 HERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 66666666666655554
No 69
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.41 E-value=2.7e-12 Score=119.20 Aligned_cols=170 Identities=12% Similarity=0.029 Sum_probs=131.3
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHc-------CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC------C
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQAL-------GFHPSSISYASLIEALASVGRTLEADAIFQEMVCF------G 142 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~------g 142 (532)
+..+|..+...+...|++++|+.+|+++.+. ..+....++..+...+...|++++|.+.+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4677889999999999999999999998873 22344567888999999999999999999988764 2
Q ss_pred C-CCChHhHHHHHHHHHhcCChhHHHHHHHHHHHc------CC-CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---
Q 009556 143 F-NPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDM------GI-CRNQETYEILLDYHVNAGRLDDTWLIINEMRSK--- 211 (532)
Q Consensus 143 ~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--- 211 (532)
- +....++..+...|...|++++|.+.|++..+. +. +.....+..+...+...|++++|.+.+++..+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 234567888889999999999999999888764 11 223456778888888889999998888887654
Q ss_pred ---CCCc-CHHhHHHHHHHHHcCCChHHHHHHHHHHHH
Q 009556 212 ---GFQL-NSFVYGKVIGLYRDNGMWKKAVGIVEEIRE 245 (532)
Q Consensus 212 ---~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 245 (532)
+..| ...++..+...+...|++++|.+.++++.+
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2122 344667777788888888888888887765
No 70
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.41 E-value=4.4e-10 Score=104.21 Aligned_cols=217 Identities=13% Similarity=0.062 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHCCCCCChHhHHHHHHHHHh-------cCCh-------hHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 009556 129 LEADAIFQEMVCFGFNPKLRFYNILLRGFLK-------KGLL-------GLGSRLLMVMEDMGICRNQETYEILLDYHVN 194 (532)
Q Consensus 129 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 194 (532)
++|..+|+++.+.. +.+...|..++..+.. .|++ ++|..+|++..+.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777777777643 4456666666666543 4664 6666666666652111344566666666666
Q ss_pred cCChHHHHHHHHHHHHCCCCcC-HH-hHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh-ccCCHHHH
Q 009556 195 AGRLDDTWLIINEMRSKGFQLN-SF-VYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFG-KYGELVEA 271 (532)
Q Consensus 195 ~~~~~~a~~~~~~m~~~~~~~~-~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A 271 (532)
.|++++|.++|++..+. .|+ .. .|..+...+.+.|++++|..+|++..+... .+...|........ ..|+.++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHH
Confidence 66666666666666653 232 22 555555555566666666666666655432 22333332222211 24555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 009556 272 LEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQG-FYP--DPKIFITIISCLGELGKWDVIKKNFENM 348 (532)
Q Consensus 272 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 348 (532)
.++|++..+... .+...|..++..+.+.|++++|..+|++..... +.| ....+..++....+.|+.+.+..+++++
T Consensus 189 ~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555544311 134445555555555555555555555555431 222 2334444444444455555555555554
Q ss_pred Hh
Q 009556 349 KD 350 (532)
Q Consensus 349 ~~ 350 (532)
.+
T Consensus 268 ~~ 269 (308)
T 2ond_A 268 FT 269 (308)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.40 E-value=1.2e-11 Score=122.02 Aligned_cols=216 Identities=11% Similarity=0.003 Sum_probs=160.9
Q ss_pred CHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCCh-hHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHH
Q 009556 127 RTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLL-GLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLII 205 (532)
Q Consensus 127 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 205 (532)
.++++.+.++...... +.+...+..+...+...|++ ++|.+.|++..+... .+...|..+...|.+.|++++|.+.|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3566777777666543 34677778888888888888 888888888777543 45677888888888888888888888
Q ss_pred HHHHHCCCCcCHHhHHHHHHHHHcC---------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc--------CCH
Q 009556 206 NEMRSKGFQLNSFVYGKVIGLYRDN---------GMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKY--------GEL 268 (532)
Q Consensus 206 ~~m~~~~~~~~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~ 268 (532)
++..+.. |+...+..+...+... |++++|.+.+++..+.. +.+...|..+...|... |++
T Consensus 161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 8887763 5567777777788887 88888888888887764 34677788888888777 888
Q ss_pred HHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 009556 269 VEALEVFEKMQQESIR--PDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFE 346 (532)
Q Consensus 269 ~~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 346 (532)
++|++.|++..+.... .+...|..+...|...|++++|++.|++..+.. +.+...+..+...+...|++++|...+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888887764220 267778888888888888888888888877653 2355667777777888888888877655
Q ss_pred HH
Q 009556 347 NM 348 (532)
Q Consensus 347 ~~ 348 (532)
.+
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 44
No 72
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.40 E-value=9.5e-11 Score=99.60 Aligned_cols=166 Identities=16% Similarity=0.088 Sum_probs=92.8
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 009556 111 SSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLD 190 (532)
Q Consensus 111 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 190 (532)
++..|..+...+...|++++|++.|++..+.. +.+..++..+..+|.+.|++++|...++....... .+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHH
Confidence 45556666666666666666666666666554 34555666666666666666666666666655432 33445555555
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 009556 191 YHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVE 270 (532)
Q Consensus 191 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 270 (532)
.+...++++.|.+.+.+....... +...+..+...+.+.|++++|++.|++..+.. +.+..+|..+...|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 555666666666666555543211 34445555555555555555555555555443 2244455555555555555555
Q ss_pred HHHHHHHHHh
Q 009556 271 ALEVFEKMQQ 280 (532)
Q Consensus 271 A~~~~~~m~~ 280 (532)
|.+.|++..+
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555555444
No 73
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.39 E-value=4.2e-11 Score=118.11 Aligned_cols=212 Identities=12% Similarity=0.008 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009556 234 KKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGEL-VEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQ 312 (532)
Q Consensus 234 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 312 (532)
+++.+.+++..... +.+...+..+...|...|++ ++|++.|++..+... .+...|..+...|...|++++|.+.|++
T Consensus 85 ~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 85 EKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44444444444332 23555666666666666666 666666666655422 1455666666666666666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHcc---------CCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhc--------CCccc
Q 009556 313 MQEQGFYPDPKIFITIISCLGEL---------GKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQY--------GRFRD 375 (532)
Q Consensus 313 m~~~~~~~~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~ 375 (532)
..+. .|+...+..+...+... |++++|...+++..+.. +.+...|..+..+|... |++++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 6654 34555566666666666 66666666666666554 33455566666666655 66666
Q ss_pred HHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009556 376 PEECIAALKLEGLQ--PSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYH 451 (532)
Q Consensus 376 a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 451 (532)
|...|++..+.... .+...|..+...|...|++++|.+.|++..+.. +.+...+..+..++...|++++|.+.+.
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66666666554310 355566666666666666666666666665542 3344556666666666666666665443
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.35 E-value=1.2e-11 Score=114.70 Aligned_cols=100 Identities=15% Similarity=0.120 Sum_probs=54.7
Q ss_pred ChHhHHHHHHHHHhcCChhHHHHHHHHHHHc-------CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------C
Q 009556 146 KLRFYNILLRGFLKKGLLGLGSRLLMVMEDM-------GICRNQETYEILLDYHVNAGRLDDTWLIINEMRSK------G 212 (532)
Q Consensus 146 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~ 212 (532)
+..++..+...+...|++++|..+|+++.+. ..+.....+..+...|...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3455666666677777777777777666552 12223445566666666666666666666665432 1
Q ss_pred C-CcCHHhHHHHHHHHHcCCChHHHHHHHHHHHH
Q 009556 213 F-QLNSFVYGKVIGLYRDNGMWKKAVGIVEEIRE 245 (532)
Q Consensus 213 ~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 245 (532)
- .....++..+...+...|++++|...++++.+
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 139 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE 139 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 1 11233444445555555555555555555443
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.34 E-value=3.3e-10 Score=108.50 Aligned_cols=241 Identities=13% Similarity=-0.012 Sum_probs=120.8
Q ss_pred CCChhhHHHHHHHH--HHcCChHHHHHHHHHHHHcC--CCCC--HhHHHHHHHH--HHhcCCHHHHH---------HHHH
Q 009556 74 EFSGNSYNKSIQYC--CKLGDIDEAMALLAQMQALG--FHPS--SISYASLIEA--LASVGRTLEAD---------AIFQ 136 (532)
Q Consensus 74 ~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~~--~~~~--~~~~~~li~~--~~~~~~~~~A~---------~~~~ 136 (532)
.|+...-+.+-..| .+.+++++|.++++++.... +..| ...|-.++.. ..-.+....+. +.++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 34555556666676 78899999999999876532 2223 2333333332 11112222222 4455
Q ss_pred HHHHCCCCCCh----HhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-c----CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 009556 137 EMVCFGFNPKL----RFYNILLRGFLKKGLLGLGSRLLMVMEDMGIC-R----NQETYEILLDYHVNAGRLDDTWLIINE 207 (532)
Q Consensus 137 ~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~----~~~~~~~li~~~~~~~~~~~a~~~~~~ 207 (532)
.+.....+.+. ..+-.....+...|++++|...|++..+.... + ...++..+...|...|+++.|...+++
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 54322101010 11222344455667777777777776543110 1 233566666667777777777766666
Q ss_pred HHHC----C-CCc-CHHhHHHHHHHHHcCCChHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHhccCCHHHHHHHHH
Q 009556 208 MRSK----G-FQL-NSFVYGKVIGLYRDNGMWKKAVGIVEEIREM----GLS-LDRQIYNSIIDTFGKYGELVEALEVFE 276 (532)
Q Consensus 208 m~~~----~-~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~ 276 (532)
..+. + ..+ ...++..+...+...|++++|.+.+++..+. +.. ....+++.+...|...|++++|.+.|+
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 246 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5432 1 011 1334555556666666666666666655432 100 012344455555555566666555555
Q ss_pred HHHh-----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009556 277 KMQQ-----ESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQE 315 (532)
Q Consensus 277 ~m~~-----~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 315 (532)
+..+ .... ...++..+...+.+.|++++|...+++..+
T Consensus 247 ~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 247 KAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5544 2111 234445555555555555555555555443
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.32 E-value=1.6e-09 Score=103.49 Aligned_cols=268 Identities=12% Similarity=-0.004 Sum_probs=166.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHh----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----hHhHHH
Q 009556 82 KSIQYCCKLGDIDEAMALLAQMQALGFHPSSI----SYASLIEALASVGRTLEADAIFQEMVCFGF-NPK----LRFYNI 152 (532)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~li~~~~~~~~~~~A~~~~~~~~~~g~-~~~----~~~~~~ 152 (532)
.....+...|++++|...+++.....-..+.. +++.+...+...|++++|.+.+++..+..- ..+ ..++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34445667899999999999987764222222 456677788889999999999988764210 111 233566
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc----CCC--c-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--c--CHHhHH
Q 009556 153 LLRGFLKKGLLGLGSRLLMVMEDM----GIC--R-NQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQ--L--NSFVYG 221 (532)
Q Consensus 153 li~~~~~~g~~~~A~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--~--~~~~~~ 221 (532)
+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++....... + ...++.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 777888889999998888877653 221 2 2345666777888888888888888887654221 1 234566
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcCCCC-C-HHHHH----HHHHHHhccCCHHHHHHHHHHHHhCCCCC---CHHHHHH
Q 009556 222 KVIGLYRDNGMWKKAVGIVEEIREMGLSL-D-RQIYN----SIIDTFGKYGELVEALEVFEKMQQESIRP---DIVTWNS 292 (532)
Q Consensus 222 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~-~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~ 292 (532)
.+...+...|++++|...+++..+....+ . ..... ..+..+...|+.++|...+++.......+ ....+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 66777778888888888888776531111 1 11111 22334667788888888877766532211 1224556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHH
Q 009556 293 LIRWHCKAGDVAKALELFTQMQEQ----GFYPDP-KIFITIISCLGELGKWDVIKKNFENMK 349 (532)
Q Consensus 293 li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~ 349 (532)
+...+...|++++|.+.+++.... |..++. ..+..+..++...|+.++|...++...
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 666777777777777777765432 111111 234444455556666666666665554
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.31 E-value=1e-09 Score=104.87 Aligned_cols=272 Identities=11% Similarity=-0.020 Sum_probs=116.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCcCHH----hHHHHHHHHHcCCChHHHHHHHHHHHHcCC-CCCH----HHHHH
Q 009556 187 ILLDYHVNAGRLDDTWLIINEMRSKGFQLNSF----VYGKVIGLYRDNGMWKKAVGIVEEIREMGL-SLDR----QIYNS 257 (532)
Q Consensus 187 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~ 257 (532)
.....+...|++++|...+++........+.. ++..+...+...|++++|.+.+++..+... ..+. .++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 33444555666666666666655543221221 233444455555666666665555543210 0111 12333
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009556 258 IIDTFGKYGELVEALEVFEKMQQE----SIR--P-DIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIIS 330 (532)
Q Consensus 258 li~~~~~~g~~~~A~~~~~~m~~~----~~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 330 (532)
+...+...|++++|.+.+++..+. +.. | ....+..+...+...|++++|...+++..+.....
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---------- 168 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY---------- 168 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS----------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc----------
Confidence 444445555555555555544321 111 1 11223334444445555555555555444321100
Q ss_pred HHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCC-CHHHHH-----HHHHHHHh
Q 009556 331 CLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQP-SGSMFC-----ILANAYAQ 404 (532)
Q Consensus 331 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~-----~li~~~~~ 404 (532)
+.+.....+..+...+...|++++|...+++.......+ ....+. ..+..+..
T Consensus 169 ---------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (373)
T 1hz4_A 169 ---------------------QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQM 227 (373)
T ss_dssp ---------------------CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred ---------------------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHH
Confidence 000012233444444455555555555555443321111 000111 11222445
Q ss_pred cCCHHHHHHHHHHhccCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcC
Q 009556 405 QGLCEQTVKVLQLMEPEGIEP---NLVMLNVLINAFGVAGKYKEALSVYHLMKDI----GISPDL-VTYSTLMKAFIRAK 476 (532)
Q Consensus 405 ~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~-~~~~~l~~~~~~~g 476 (532)
.|++++|...+++.......+ ....+..+...+...|++++|...+++.... |..++. ..+..+..++...|
T Consensus 228 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g 307 (373)
T 1hz4_A 228 TGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAG 307 (373)
T ss_dssp TTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhC
Confidence 555655555555554332111 1223444555555556666666555554321 111122 13444445555556
Q ss_pred CcChHHHHHHHHH
Q 009556 477 KFHKVPEIYKQME 489 (532)
Q Consensus 477 ~~~~a~~~~~~m~ 489 (532)
+.++|...+++..
T Consensus 308 ~~~~A~~~l~~al 320 (373)
T 1hz4_A 308 RKSDAQRVLLDAL 320 (373)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 6666655555544
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.31 E-value=2.7e-10 Score=96.57 Aligned_cols=164 Identities=15% Similarity=0.060 Sum_probs=110.7
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHH
Q 009556 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGF 157 (532)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 157 (532)
..|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 456667777778888888888888776653 4456677777777888888888888888777654 34566677777777
Q ss_pred HhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHH
Q 009556 158 LKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAV 237 (532)
Q Consensus 158 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 237 (532)
...|++++|.+.++++.+... .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 777777777777777766532 355566666666777777777777776666543 224455555666666666666666
Q ss_pred HHHHHHHH
Q 009556 238 GIVEEIRE 245 (532)
Q Consensus 238 ~~~~~~~~ 245 (532)
..++.+.+
T Consensus 165 ~~~~~~~~ 172 (186)
T 3as5_A 165 PHFKKANE 172 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665544
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.30 E-value=5.6e-10 Score=106.85 Aligned_cols=227 Identities=9% Similarity=-0.012 Sum_probs=105.5
Q ss_pred HHHcCCChHHHHHHHHHHHHcCC-CC----CHHHHHHHHHHHhccCCHHHHHHHHHHHHhC----CC-CC-CHHHHHHHH
Q 009556 226 LYRDNGMWKKAVGIVEEIREMGL-SL----DRQIYNSIIDTFGKYGELVEALEVFEKMQQE----SI-RP-DIVTWNSLI 294 (532)
Q Consensus 226 ~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~p-~~~~~~~li 294 (532)
.+...|++++|...+++..+... .+ ...++..+...|...|+++.|...+++..+. +. .+ ...+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 33445555555555555543210 01 1234455555555566666655555554321 00 00 123455555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhc----CCCCCHhHHHHHHH
Q 009556 295 RWHCKAGDVAKALELFTQMQEQ----GFYP-DPKIFITIISCLGELGKWDVIKKNFENMKDR----GHGKIGAIYAILVD 365 (532)
Q Consensus 295 ~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li~ 365 (532)
..|...|++++|.+.+++..+. +..+ ...++..+...+...|++++|...+++..+. +.+....++..+..
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 6666666666666666654431 1000 1233444555555566666666655555441 11222444555555
Q ss_pred HHHhcCCcccHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Q 009556 366 IYGQYGRFRDPEECIAALKLEGL----QPSGSMFCILANAYAQQGL---CEQTVKVLQLMEPEGIEPNLVMLNVLINAFG 438 (532)
Q Consensus 366 ~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 438 (532)
.|.+.|++++|...+++..+... +.....+..+...|...++ +.+|...+++... .+.....+..+...|.
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~--~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL--HAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC--hhHHHHHHHHHHHHHH
Confidence 55555555555555555544211 1111223333334444444 4555555544211 0111233445555566
Q ss_pred hcCCHHHHHHHHHHHH
Q 009556 439 VAGKYKEALSVYHLMK 454 (532)
Q Consensus 439 ~~g~~~~A~~~~~~m~ 454 (532)
..|++++|.+.|++..
T Consensus 348 ~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 348 SSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHH
Confidence 6666666666555554
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.28 E-value=2.6e-10 Score=117.04 Aligned_cols=165 Identities=12% Similarity=0.054 Sum_probs=148.0
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHH
Q 009556 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (532)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (532)
...|+.+...|.+.|++++|++.|++..+.. +.+..+|..+..++.+.|++++|++.|++..+.. +.+...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 5679999999999999999999999999874 4568899999999999999999999999999875 4568899999999
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHH
Q 009556 157 FLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKA 236 (532)
Q Consensus 157 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 236 (532)
|.+.|++++|++.|++..+... -+...|+.+...|.+.|++++|++.|++..+.... +...+..+..++...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHH
Confidence 9999999999999999988653 46789999999999999999999999999886432 678899999999999999999
Q ss_pred HHHHHHHHH
Q 009556 237 VGIVEEIRE 245 (532)
Q Consensus 237 ~~~~~~~~~ 245 (532)
.+.++++.+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888765
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.25 E-value=9.1e-10 Score=93.25 Aligned_cols=162 Identities=16% Similarity=0.113 Sum_probs=86.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 009556 113 ISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYH 192 (532)
Q Consensus 113 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 192 (532)
..+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+... .+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence 345555666666677777777666665443 33455666666666666666666666666655422 3445555555555
Q ss_pred HhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHH
Q 009556 193 VNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEAL 272 (532)
Q Consensus 193 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 272 (532)
...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 56666666666665555432 1234444444445555555555555555544432 223344444444444444444444
Q ss_pred HHHHHH
Q 009556 273 EVFEKM 278 (532)
Q Consensus 273 ~~~~~m 278 (532)
+.+++.
T Consensus 165 ~~~~~~ 170 (186)
T 3as5_A 165 PHFKKA 170 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.22 E-value=5.8e-10 Score=114.51 Aligned_cols=168 Identities=9% Similarity=-0.010 Sum_probs=147.5
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHH
Q 009556 109 HPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEIL 188 (532)
Q Consensus 109 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 188 (532)
+.+..+|+.+...+.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++|++.|++..+... -+...|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 3456789999999999999999999999999875 45678999999999999999999999999988653 467899999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 009556 189 LDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGEL 268 (532)
Q Consensus 189 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 268 (532)
...|.+.|++++|++.|++..+.... +..++..+..++...|++++|++.|++..+.. +-+...+..+...|...|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccH
Confidence 99999999999999999999886433 67889999999999999999999999999875 34688899999999999999
Q ss_pred HHHHHHHHHHHh
Q 009556 269 VEALEVFEKMQQ 280 (532)
Q Consensus 269 ~~A~~~~~~m~~ 280 (532)
++|.+.+++..+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999988887654
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.19 E-value=5.5e-09 Score=92.02 Aligned_cols=198 Identities=12% Similarity=0.065 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 009556 288 VTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIY 367 (532)
Q Consensus 288 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 367 (532)
..+......+...|++++|++.|++..+....++...+..+..++...|++++|...++...+.. +.+...+..+..+|
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 86 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHHH
Confidence 44444444445555555555555554443322344444444445555555555555555554433 22344455555555
Q ss_pred HhcCCcccHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCC---HHHHHHHHHHH
Q 009556 368 GQYGRFRDPEECIAALKLEGLQPSG-------SMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPN---LVMLNVLINAF 437 (532)
Q Consensus 368 ~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~ 437 (532)
...|++++|...+++..+... .+. ..|..+...+...|++++|.+.+++..+. .|+ ...|..+..+|
T Consensus 87 ~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 87 RDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHH
Confidence 555555555555555554421 122 23555666667777777777777777664 343 45556666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCHHH
Q 009556 438 GVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKA 499 (532)
Q Consensus 438 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 499 (532)
...| ..+++++...+ ..+...|.... ....+.+++|...+++..+ +.|+...
T Consensus 164 ~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~--l~p~~~~ 215 (228)
T 4i17_A 164 YNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVT--LSPNRTE 215 (228)
T ss_dssp HHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HCTTCHH
T ss_pred HHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh--cCCCCHH
Confidence 5433 33344444432 12333343332 2334556777777777776 4555443
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.18 E-value=6.1e-09 Score=91.71 Aligned_cols=194 Identities=10% Similarity=-0.041 Sum_probs=151.8
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHH
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (532)
|+..|......+.+.|++++|+..|++..+...+++...+..+..++...|++++|++.|++..+.. +.+...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 5577888889999999999999999999988633788888889999999999999999999999875 446788999999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCcCH-------HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcC---HHhHHHHHH
Q 009556 156 GFLKKGLLGLGSRLLMVMEDMGICRNQ-------ETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLN---SFVYGKVIG 225 (532)
Q Consensus 156 ~~~~~g~~~~A~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~ 225 (532)
.|...|++++|.+.|++..+... .+. ..|..+...+...|++++|.+.|++..+. .|+ ...+..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 99999999999999999988643 334 45788888899999999999999999876 444 456666666
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 009556 226 LYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQE 281 (532)
Q Consensus 226 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 281 (532)
.+... +..+++++...+ ..+...|.... ....+.+++|...|++..+.
T Consensus 162 ~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 162 LFYNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 66544 344455555543 22444444443 23456689999999998875
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.17 E-value=4.3e-10 Score=102.54 Aligned_cols=227 Identities=12% Similarity=0.015 Sum_probs=153.9
Q ss_pred HcCChHHHHHHHHHHHH-------cCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC-CCChHhHHHHH
Q 009556 89 KLGDIDEAMALLAQMQA-------LGFHPSSISYASLIEALASVGRTLEADAIFQEMVCF------GF-NPKLRFYNILL 154 (532)
Q Consensus 89 ~~g~~~~A~~~~~~m~~-------~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~------g~-~~~~~~~~~li 154 (532)
..|++++|+..|++..+ ...+....++..+...+...|++++|.+.++++.+. +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 34555556555555443 222334667888999999999999999999988754 22 23456788899
Q ss_pred HHHHhcCChhHHHHHHHHHHHc------C-CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCc-CHHhH
Q 009556 155 RGFLKKGLLGLGSRLLMVMEDM------G-ICRNQETYEILLDYHVNAGRLDDTWLIINEMRSK------GFQL-NSFVY 220 (532)
Q Consensus 155 ~~~~~~g~~~~A~~~~~~m~~~------~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~~-~~~~~ 220 (532)
..|...|++++|.+.|++..+. . .+....++..+...+...|++++|...+++..+. +-.| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999988764 1 1234567888999999999999999999998764 1122 35678
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHc-------CC-CCCHHHHHHHHHHHhccCC------HHHHHHHHHHHHhCCCCCC
Q 009556 221 GKVIGLYRDNGMWKKAVGIVEEIREM-------GL-SLDRQIYNSIIDTFGKYGE------LVEALEVFEKMQQESIRPD 286 (532)
Q Consensus 221 ~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~-~~~~~~~~~li~~~~~~g~------~~~A~~~~~~m~~~~~~p~ 286 (532)
..+...+...|++++|...++++.+. .. ......+..+...+...+. +..+...++..... .+..
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 251 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPTV 251 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHHH
Confidence 88889999999999999999988763 11 1122233333333332222 33333333322211 1123
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 009556 287 IVTWNSLIRWHCKAGDVAKALELFTQMQEQ 316 (532)
Q Consensus 287 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 316 (532)
..++..+...|...|++++|..++++..+.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456888999999999999999999987753
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.14 E-value=7.6e-10 Score=100.85 Aligned_cols=228 Identities=9% Similarity=-0.021 Sum_probs=157.5
Q ss_pred hcCCHHHHHHHHHHHHHC-------CCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHc------CC-CcCHHHHHHHH
Q 009556 124 SVGRTLEADAIFQEMVCF-------GFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDM------GI-CRNQETYEILL 189 (532)
Q Consensus 124 ~~~~~~~A~~~~~~~~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~-~~~~~~~~~li 189 (532)
..|++++|.+.|++..+. ..+....++..+...|...|++++|...+++..+. +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 456777777777666542 22334678889999999999999999999998764 21 23456889999
Q ss_pred HHHHhcCChHHHHHHHHHHHHC------CC-CcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHc------C-CCCCHHHH
Q 009556 190 DYHVNAGRLDDTWLIINEMRSK------GF-QLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREM------G-LSLDRQIY 255 (532)
Q Consensus 190 ~~~~~~~~~~~a~~~~~~m~~~------~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~ 255 (532)
..|...|++++|.+.+++.... .. +....++..+...+...|++++|...++++.+. + .+....++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999998764 11 224667888889999999999999999998765 1 12235678
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH--HH-CC--CCCCH
Q 009556 256 NSIIDTFGKYGELVEALEVFEKMQQE-------SIRP-DIVTWNSLIRWHCKAGDVAKALELFTQM--QE-QG--FYPDP 322 (532)
Q Consensus 256 ~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~-~~--~~~~~ 322 (532)
..+...|...|++++|...+++..+. ...+ ....|..+...+...+....+..+.... .+ .+ .+...
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVN 252 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHH
Confidence 88999999999999999999988753 1111 2223333333333333322222211111 11 11 11234
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 009556 323 KIFITIISCLGELGKWDVIKKNFENMKDR 351 (532)
Q Consensus 323 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 351 (532)
.++..+...+...|++++|...+++..+.
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56788889999999999999999988754
No 87
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.12 E-value=5.7e-09 Score=82.95 Aligned_cols=130 Identities=17% Similarity=0.126 Sum_probs=99.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHH
Q 009556 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFL 158 (532)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 158 (532)
.|..+...+...|++++|+.+|+++.+.+ +.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 46777888888888888888888887764 4567777888888888888888888888887765 445667777788888
Q ss_pred hcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 009556 159 KKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSK 211 (532)
Q Consensus 159 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 211 (532)
..|++++|.+.++++.+... .+...+..+...+.+.|++++|.+.++++...
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 88888888888888776543 35666777777777778888887777777654
No 88
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.11 E-value=6.5e-08 Score=95.24 Aligned_cols=370 Identities=8% Similarity=-0.010 Sum_probs=208.3
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCC-HHHHHHHHHHHHHC-CCC-CChHhHHHHH
Q 009556 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGR-TLEADAIFQEMVCF-GFN-PKLRFYNILL 154 (532)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~-~~~A~~~~~~~~~~-g~~-~~~~~~~~li 154 (532)
..|...+..+-. |+++.|..+|++.... .|+...|...+....+.+. .+....+|+..... |.. .+...|...+
T Consensus 16 ~vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi 92 (493)
T 2uy1_A 16 AIMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYI 92 (493)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHH
T ss_pred HHHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 345566665544 7788888888877764 4677777777776666553 34566677766643 422 3556666666
Q ss_pred HHHH----hcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcC
Q 009556 155 RGFL----KKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDN 230 (532)
Q Consensus 155 ~~~~----~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 230 (532)
..+. ..|+++.+.++|++........-...|......- +......+.+++.+..
T Consensus 93 ~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE-~~~~~~~~~~~~~~~~--------------------- 150 (493)
T 2uy1_A 93 EEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFE-LELNKITGKKIVGDTL--------------------- 150 (493)
T ss_dssp HHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHH-HHHCHHHHHHHHHHHH---------------------
T ss_pred HHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHH-HHhccccHHHHHHHHh---------------------
Confidence 5543 2355667777777777632111111222222111 1111112222221110
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC--C-----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 009556 231 GMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYG--E-----LVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDV 303 (532)
Q Consensus 231 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~-----~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 303 (532)
+.+..|..+++++...-...+...|...+..-...+ - .+.+..+|+++.... +.+...|...+.-+.+.|++
T Consensus 151 ~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~ 229 (493)
T 2uy1_A 151 PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQK 229 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCH
Confidence 122333444443332100013345555544432211 0 344667787777642 33567777777778888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC------------CCCCHhHHHHHHHHHHhcC
Q 009556 304 AKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRG------------HGKIGAIYAILVDIYGQYG 371 (532)
Q Consensus 304 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------------~~~~~~~~~~li~~~~~~g 371 (532)
++|..++++.... |....+.. .|....+.++. ++.+.+.- ......+|...+..+.+.+
T Consensus 230 ~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~ 300 (493)
T 2uy1_A 230 EKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKR 300 (493)
T ss_dssp HHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcC
Confidence 9998888888876 33322211 12221111111 22222110 0112345666777777778
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009556 372 RFRDPEECIAALKLEGLQPSGSMFCILANAYAQQ-GLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVY 450 (532)
Q Consensus 372 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 450 (532)
..+.|..+|+.. .. ...+...|...+..-... ++.+.|.++|+...+.. +-+...|...++...+.|+.+.|..+|
T Consensus 301 ~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~ 377 (493)
T 2uy1_A 301 GLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALF 377 (493)
T ss_dssp CHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 899999999988 32 223444554333322223 36999999999887652 224556677788788899999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHh
Q 009556 451 HLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES 490 (532)
Q Consensus 451 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (532)
+++. .....|...+.--...|+.+.+.++++++.+
T Consensus 378 er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 378 KRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9873 2567788888777788999999998888874
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.06 E-value=1.2e-08 Score=93.58 Aligned_cols=97 Identities=11% Similarity=-0.091 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCc-C----HHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH-----
Q 009556 184 TYEILLDYHVNA-GRLDDTWLIINEMRSKGFQL-N----SFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDR----- 252 (532)
Q Consensus 184 ~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~~-~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----- 252 (532)
+++.+...|... |++++|+..|++..+..... + ..++..+...+...|++++|...|++..+.......
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 444445555553 55555555555443321000 0 233445555555555555555555555554322111
Q ss_pred -HHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 009556 253 -QIYNSIIDTFGKYGELVEALEVFEKMQQ 280 (532)
Q Consensus 253 -~~~~~li~~~~~~g~~~~A~~~~~~m~~ 280 (532)
..+..+..++...|++++|...|++..+
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1344455555555666666666655543
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.06 E-value=1.2e-07 Score=85.54 Aligned_cols=206 Identities=12% Similarity=0.023 Sum_probs=97.1
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 009556 191 YHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVE 270 (532)
Q Consensus 191 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 270 (532)
-..-.|.+..++.-. .+.....+......+.+++...|+++.. ..-.|....+..+...+ ..+
T Consensus 22 n~fy~G~yq~~i~e~---~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~---- 84 (310)
T 3mv2_B 22 QNYYTGNFVQCLQEI---EKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK---- 84 (310)
T ss_dssp HHHTTTCHHHHTHHH---HTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----
T ss_pred HHHHhhHHHHHHHHH---HhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----
Confidence 344467777766622 2222122223334445666666666531 11223333333333322 221
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 009556 271 ALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGF-YPDPKIFITIISCLGELGKWDVIKKNFENMK 349 (532)
Q Consensus 271 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 349 (532)
|+..|++..+.+ .++..++..+..++...|++++|++++.+....+. .-+...+...+..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 556666555443 33444445666666666777777766666654432 1234555556666666666666666666665
Q ss_pred hcCCCC-----CHhHHHHHHHHH--Hh--cCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 009556 350 DRGHGK-----IGAIYAILVDIY--GQ--YGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLM 418 (532)
Q Consensus 350 ~~~~~~-----~~~~~~~li~~~--~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 418 (532)
+.. | +..+...+..++ .. .++..+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+
T Consensus 164 ~~~--~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 164 NAI--EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHS--CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hcC--ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 542 2 123333333331 11 22555555555555433 222112222222445555555555555443
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.02 E-value=1.3e-07 Score=85.30 Aligned_cols=145 Identities=10% Similarity=-0.019 Sum_probs=69.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCCh
Q 009556 84 IQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLL 163 (532)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 163 (532)
|+-..-.|++..++.-...+.. ......-..+.+++...|++... ..-.|....+..+...+ ..+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT--
T ss_pred HHHHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc--
Confidence 5556667888888773332221 11222333445667777766531 11123322333222222 211
Q ss_pred hHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-cCHHhHHHHHHHHHcCCChHHHHHHHHH
Q 009556 164 GLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQ-LNSFVYGKVIGLYRDNGMWKKAVGIVEE 242 (532)
Q Consensus 164 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 242 (532)
|+..|++..+.+ .++..++..+..++...|++++|++++.+....+.. -+...+..++..+.+.|+.+.|.+.++.
T Consensus 85 --a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 --NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp --CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 445555544433 233444445555566666666666666655444321 1344444555555555555555555555
Q ss_pred HHHc
Q 009556 243 IREM 246 (532)
Q Consensus 243 ~~~~ 246 (532)
|.+.
T Consensus 162 ~~~~ 165 (310)
T 3mv2_B 162 YTNA 165 (310)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
No 92
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.01 E-value=2.2e-08 Score=86.68 Aligned_cols=112 Identities=13% Similarity=0.053 Sum_probs=67.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHH----------------HHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 009556 81 NKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYAS----------------LIEALASVGRTLEADAIFQEMVCFGFN 144 (532)
Q Consensus 81 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~----------------li~~~~~~~~~~~A~~~~~~~~~~g~~ 144 (532)
-.....+.+.|++++|+..|++..+.. +.+...|.. +..++.+.|++++|...|++..+.. +
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p 85 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-P 85 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-C
Confidence 344556678899999999999988763 223445555 5556666666666666666665543 3
Q ss_pred CChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc
Q 009556 145 PKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNA 195 (532)
Q Consensus 145 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 195 (532)
.+...+..+...+...|++++|...|++..+..+ .+..+|..+...|...
T Consensus 86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYYLT 135 (208)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 3455556666666666666666666666655432 3444555555554433
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.00 E-value=3.5e-08 Score=78.26 Aligned_cols=129 Identities=14% Similarity=0.102 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 009556 114 SYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHV 193 (532)
Q Consensus 114 ~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 193 (532)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|...++++...+. .+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHH
Confidence 34555666666666666666666665543 33455555566666666666666666666655432 33445555555555
Q ss_pred hcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHH
Q 009556 194 NAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIRE 245 (532)
Q Consensus 194 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 245 (532)
..|++++|.+.++++.+... .+...+..+...+...|++++|...++++.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 55555555555555554321 1334444444555555555555555554443
No 94
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.99 E-value=4.2e-06 Score=82.30 Aligned_cols=342 Identities=11% Similarity=-0.017 Sum_probs=200.3
Q ss_pred CCChhhHHHHHHHHHHcCC-hHHHHHHHHHHHHc-CC-CCCHhHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCC
Q 009556 74 EFSGNSYNKSIQYCCKLGD-IDEAMALLAQMQAL-GF-HPSSISYASLIEALA----SVGRTLEADAIFQEMVCFGFNPK 146 (532)
Q Consensus 74 ~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~-~~-~~~~~~~~~li~~~~----~~~~~~~A~~~~~~~~~~g~~~~ 146 (532)
.|+...|...++...+.++ .+....+|+..... |. +.+...|...+..+. ..++.+.+..+|++.+......-
T Consensus 44 ~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~ 123 (493)
T 2uy1_A 44 SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSL 123 (493)
T ss_dssp CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTH
T ss_pred CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhH
Confidence 5799999999998888774 45677888887764 42 346778888887654 34678899999999997321111
Q ss_pred hHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHH
Q 009556 147 LRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGL 226 (532)
Q Consensus 147 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 226 (532)
...|...... .+......+.++..+.. +.+..|..+++.+...-...+...|...+..
T Consensus 124 ~~lw~~Y~~f-E~~~~~~~~~~~~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~ 181 (493)
T 2uy1_A 124 SELWKDFENF-ELELNKITGKKIVGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDL 181 (493)
T ss_dssp HHHHHHHHHH-HHHHCHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHhccccHHHHHHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 1222222111 11111222222222211 1223333333333211000122344443333
Q ss_pred HHcCC--C-----hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 009556 227 YRDNG--M-----WKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCK 299 (532)
Q Consensus 227 ~~~~~--~-----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 299 (532)
-...+ - .+.+..+|++++... +.+...|-..+..+.+.|+.+.|..++++.... +.+...|. .|..
T Consensus 182 E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~ 254 (493)
T 2uy1_A 182 EMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGL 254 (493)
T ss_dssp HHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHH
T ss_pred HhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHh
Confidence 22211 1 234567787777653 445777777777778888888888888888776 22332222 2222
Q ss_pred cCCHHHHHHHHHHHHHCC---------CCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 009556 300 AGDVAKALELFTQMQEQG---------FYP---DPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIY 367 (532)
Q Consensus 300 ~g~~~~A~~~~~~m~~~~---------~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 367 (532)
..+.++. ++.+.+.- ..+ ....|...+....+.++.+.|..+|+.+ +.. ..+..+|......-
T Consensus 255 ~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE 329 (493)
T 2uy1_A 255 VMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIE 329 (493)
T ss_dssp HTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHH
T ss_pred hcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHH
Confidence 2121221 22222110 011 1244566666666778899999999998 322 23444554333333
Q ss_pred HhcC-CcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009556 368 GQYG-RFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEA 446 (532)
Q Consensus 368 ~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 446 (532)
...+ +.+.|..+|+...+.. +-+...|...++.....|+.+.|..+|+.+.+ ....|...+..-...|+.+.+
T Consensus 330 ~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-----~~~lw~~~~~fE~~~G~~~~~ 403 (493)
T 2uy1_A 330 YYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLEK-----TSRMWDSMIEYEFMVGSMELF 403 (493)
T ss_dssp HHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-----BHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCHHHH
Confidence 3333 6999999999998764 23455667778878889999999999999842 467788888877888999999
Q ss_pred HHHHHHHHH
Q 009556 447 LSVYHLMKD 455 (532)
Q Consensus 447 ~~~~~~m~~ 455 (532)
..+++++.+
T Consensus 404 r~v~~~~~~ 412 (493)
T 2uy1_A 404 RELVDQKMD 412 (493)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988863
No 95
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.98 E-value=3e-08 Score=90.92 Aligned_cols=205 Identities=12% Similarity=0.042 Sum_probs=141.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHccCCHHHH
Q 009556 267 ELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQ----GFYPD-PKIFITIISCLGELGKWDVI 341 (532)
Q Consensus 267 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~-~~~~~~ll~~~~~~~~~~~a 341 (532)
++++|...|++. ...|...|++++|.+.|.+..+. |..++ ..+|..+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477888777665 33566788888888888876542 22211 45777888888888999999
Q ss_pred HHHHHHHHhcCCC---C--CHhHHHHHHHHHHhc-CCcccHHHHHHHHHHcCCCC-C----HHHHHHHHHHHHhcCCHHH
Q 009556 342 KKNFENMKDRGHG---K--IGAIYAILVDIYGQY-GRFRDPEECIAALKLEGLQP-S----GSMFCILANAYAQQGLCEQ 410 (532)
Q Consensus 342 ~~~~~~~~~~~~~---~--~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~g~~~~ 410 (532)
...+++..+.... + ...+++.+..+|... |++++|+..|++..+..... + ..++..+...+...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 8888887653211 1 135678888889886 99999999999876542111 1 3467888899999999999
Q ss_pred HHHHHHHhccCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHH--hcC
Q 009556 411 TVKVLQLMEPEGIEPNL------VMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLV------TYSTLMKAFI--RAK 476 (532)
Q Consensus 411 A~~~~~~m~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------~~~~l~~~~~--~~g 476 (532)
|...+++..+....... ..|..+..++...|++++|...|++..+. .|+.. .+..++.++. ..+
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 99999998775322211 25677888899999999999999998763 33321 2444555554 234
Q ss_pred CcChHHHHHHHH
Q 009556 477 KFHKVPEIYKQM 488 (532)
Q Consensus 477 ~~~~a~~~~~~m 488 (532)
++++|++.|+++
T Consensus 255 ~~~~A~~~~~~~ 266 (292)
T 1qqe_A 255 QLSEHCKEFDNF 266 (292)
T ss_dssp THHHHHHHHTTS
T ss_pred HHHHHHHHhccC
Confidence 566666666555
No 96
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.98 E-value=3.2e-08 Score=89.09 Aligned_cols=186 Identities=13% Similarity=0.070 Sum_probs=118.2
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC---HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-C-CChHhH
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPS---SISYASLIEALASVGRTLEADAIFQEMVCFGF-N-PKLRFY 150 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~-~-~~~~~~ 150 (532)
+...+-.+...+.+.|++++|+..|+++.+.. +.+ ...+..+..++...|++++|...|++..+... . .....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 45566677788889999999999999998874 233 66788889999999999999999999987631 1 224567
Q ss_pred HHHHHHHHh--------cCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHH
Q 009556 151 NILLRGFLK--------KGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGK 222 (532)
Q Consensus 151 ~~li~~~~~--------~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 222 (532)
..+..++.+ .|++++|...|+++.+..+ .+...+..+.. +...... -...+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~a~~~--------------~~~~~~~----~~~~~~~ 153 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP-NHELVDDATQK--------------IRELRAK----LARKQYE 153 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT-TCTTHHHHHHH--------------HHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc-CchhHHHHHHH--------------HHHHHHH----HHHHHHH
Confidence 777888888 8999999999999887542 12222211100 0000000 0111334
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhcc----------CCHHHHHHHHHHHHhC
Q 009556 223 VIGLYRDNGMWKKAVGIVEEIREMGLSL--DRQIYNSIIDTFGKY----------GELVEALEVFEKMQQE 281 (532)
Q Consensus 223 ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~ 281 (532)
+...+.+.|++++|+..|+.+.+..... ....+..+..+|... |++++|...|+++.+.
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 4555666666666666666665542211 233455555555544 6666666666666553
No 97
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.97 E-value=8.2e-07 Score=80.84 Aligned_cols=223 Identities=6% Similarity=-0.005 Sum_probs=160.5
Q ss_pred HHcCCh-HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCChHhHHHHHHHH----Hhc
Q 009556 88 CKLGDI-DEAMALLAQMQALGFHPSSISYASLIEALASVG--RTLEADAIFQEMVCFGFNPKLRFYNILLRGF----LKK 160 (532)
Q Consensus 88 ~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~--~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~----~~~ 160 (532)
.+.|.+ ++|+++++.+...+ +-+...|+.--..+...+ ++++++++++.+.... +-+..+|+.-...+ ...
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 43 MKAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHT
T ss_pred HHcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhc
Confidence 445554 68999999999875 456677998888888888 9999999999999865 45667777655555 555
Q ss_pred ---CChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChH--HHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCC---
Q 009556 161 ---GLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLD--DTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGM--- 232 (532)
Q Consensus 161 ---g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~--- 232 (532)
+++++++++++.+.+... .|-.+|+.-.-.+.+.|.++ ++++.++++.+..+. |...|+.-...+...+.
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCC
T ss_pred cccCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccch
Confidence 788899999999888654 67788888888888888877 888888888877544 66677666666666665
Q ss_pred ---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH-HHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHH
Q 009556 233 ---WKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVE-ALEVFEKMQQES--IRPDIVTWNSLIRWHCKAGDVAKA 306 (532)
Q Consensus 233 ---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~A 306 (532)
++++++.++.+.... +-|...|+-+-..+.+.|+..+ +.++.+++.+.+ -..+...+..+...|.+.|+.++|
T Consensus 199 ~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 777777777777665 3477777777777766666333 444555544322 123566667777777777777777
Q ss_pred HHHHHHHHH
Q 009556 307 LELFTQMQE 315 (532)
Q Consensus 307 ~~~~~~m~~ 315 (532)
.++++.+.+
T Consensus 278 ~~~~~~l~~ 286 (306)
T 3dra_A 278 RTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777777664
No 98
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.95 E-value=5.8e-08 Score=87.42 Aligned_cols=212 Identities=9% Similarity=-0.036 Sum_probs=141.2
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--cCHH
Q 009556 109 HPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPK---LRFYNILLRGFLKKGLLGLGSRLLMVMEDMGIC--RNQE 183 (532)
Q Consensus 109 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~ 183 (532)
+.+...+......+.+.|++++|.+.|+.+.+.. +.+ ...+..+..+|.+.|++++|...|++..+..+. ....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 3456677777888888999999999999988764 223 567788888888999999999999988875321 1244
Q ss_pred HHHHHHHHHHh--------cCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHH
Q 009556 184 TYEILLDYHVN--------AGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIY 255 (532)
Q Consensus 184 ~~~~li~~~~~--------~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 255 (532)
.+..+..++.. .|++++|...|++..+.... +......+. .+..+... ....+
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~--------------~~~~~~~~----~~~~~ 151 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQ--------------KIRELRAK----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHH--------------HHHHHHHH----HHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHH--------------HHHHHHHH----HHHHH
Confidence 66677777777 88888888888888775321 112211111 11111110 11225
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHCCCCCC--
Q 009556 256 NSIIDTFGKYGELVEALEVFEKMQQESIRP--DIVTWNSLIRWHCKA----------GDVAKALELFTQMQEQGFYPD-- 321 (532)
Q Consensus 256 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~~~-- 321 (532)
..+...|.+.|++++|+..|+++.+..... ....+..+..+|... |++++|...++++.+......
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 667888999999999999999998753221 245677788888866 899999999999987532211
Q ss_pred HHHHHHHHHHHHccCCHHH
Q 009556 322 PKIFITIISCLGELGKWDV 340 (532)
Q Consensus 322 ~~~~~~ll~~~~~~~~~~~ 340 (532)
......+-..+.+.++++.
T Consensus 232 ~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 232 RTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 2334444445555444443
No 99
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.94 E-value=3.9e-08 Score=85.14 Aligned_cols=191 Identities=12% Similarity=0.065 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHH
Q 009556 287 IVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDP-KIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVD 365 (532)
Q Consensus 287 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 365 (532)
...+......+...|++++|+..|++..+. .|+. ..+.. ..... ...........+..
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~-----~~~~~--------------~~~~~~~~~~~lg~ 62 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYW-----TNVDK--------------NSEISSKLATELAL 62 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHH-----HHSCT--------------TSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHH-----hhhcc--------------hhhhhHHHHHHHHH
Confidence 334444555677888888888888887764 2322 22221 00000 00011222334677
Q ss_pred HHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCC--H
Q 009556 366 IYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGK--Y 443 (532)
Q Consensus 366 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~ 443 (532)
+|.+.|++++|...|++..+.+ +.+...+..+...+...|++++|.+.|++..+.. +.+...|..+..+|...|. .
T Consensus 63 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~ 140 (208)
T 3urz_A 63 AYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEK 140 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHH
Confidence 7777888888888888877764 3356677778888888888888888888877653 4456777777777765543 3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCHHHHHHHH
Q 009556 444 KEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQ 504 (532)
Q Consensus 444 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~ 504 (532)
+.+...++.... ..|....+..+..++...|++++|...|++..+ +.|+......+.
T Consensus 141 ~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~ 197 (208)
T 3urz_A 141 KKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence 334444444432 222222334445556667888888888888876 667765544433
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.93 E-value=1.2e-08 Score=105.29 Aligned_cols=172 Identities=7% Similarity=-0.085 Sum_probs=107.0
Q ss_pred HhcCCHHHHHHHHHHHH--------HCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 009556 123 ASVGRTLEADAIFQEMV--------CFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVN 194 (532)
Q Consensus 123 ~~~~~~~~A~~~~~~~~--------~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 194 (532)
...|++++|++.+++.. +.. +.+...+..+...+.+.|++++|.+.|++..+... .+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHH
Confidence 55666777777776666 322 34455666666677777777777777776665432 345566666667777
Q ss_pred cCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 009556 195 AGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEV 274 (532)
Q Consensus 195 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 274 (532)
.|++++|.+.|++..+.... +...+..+..++.+.|++++ .+.|+++.+.+ +.+...|..+..++.+.|++++|.+.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777777776665322 45566666667777777777 77777776654 23566677777777777777777777
Q ss_pred HHHHHhCCCCCC-HHHHHHHHHHHHHcC
Q 009556 275 FEKMQQESIRPD-IVTWNSLIRWHCKAG 301 (532)
Q Consensus 275 ~~~m~~~~~~p~-~~~~~~li~~~~~~g 301 (532)
|++..+. .|+ ...|..+..++...+
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC---
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccC
Confidence 7766654 233 445555555554433
No 101
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.92 E-value=2.4e-08 Score=83.90 Aligned_cols=162 Identities=8% Similarity=-0.023 Sum_probs=117.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHH-HH
Q 009556 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG-FL 158 (532)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~-~~ 158 (532)
+......+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|...++...+.. |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 4566778889999999999999877664 4567888899999999999999999999887654 344433332222 22
Q ss_pred hcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCc-CHHhHHHHHHHHHcCCChHHHH
Q 009556 159 KKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQL-NSFVYGKVIGLYRDNGMWKKAV 237 (532)
Q Consensus 159 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~ 237 (532)
..++...|...+++..+..+ .+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANP-DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 22334456777887776533 356778888888888888888888888888765433 3557777778888888888888
Q ss_pred HHHHHHHH
Q 009556 238 GIVEEIRE 245 (532)
Q Consensus 238 ~~~~~~~~ 245 (532)
..|++...
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88776653
No 102
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.87 E-value=6.7e-08 Score=99.66 Aligned_cols=173 Identities=15% Similarity=0.014 Sum_probs=144.2
Q ss_pred hccCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 009556 263 GKYGELVEALEVFEKMQ--------QESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGE 334 (532)
Q Consensus 263 ~~~g~~~~A~~~~~~m~--------~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 334 (532)
...|++++|++.+++.. +.. +.+...+..+...+...|++++|++.|++..+.. +-+...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 77899999999999988 332 3356788889999999999999999999998753 3367888889999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009556 335 LGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKV 414 (532)
Q Consensus 335 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 414 (532)
.|++++|...|+++.+.. +.+...+..+..+|.+.|++++ ++.|++..+.+ +.+...|..+..++.+.|++++|.+.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999876 4567888999999999999999 99999998875 34677899999999999999999999
Q ss_pred HHHhccCCCCCC-HHHHHHHHHHHHhcCC
Q 009556 415 LQLMEPEGIEPN-LVMLNVLINAFGVAGK 442 (532)
Q Consensus 415 ~~~m~~~~~~p~-~~~~~~li~~~~~~g~ 442 (532)
|++..+. .|+ ...+..+..++...++
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 9999876 454 5677777777766554
No 103
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.87 E-value=2.9e-06 Score=77.19 Aligned_cols=219 Identities=11% Similarity=0.009 Sum_probs=141.3
Q ss_pred CHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcC--ChhHHHHHHHHHHHcCCCcCHHHHHHHHHHH----Hhc---CC
Q 009556 127 RTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKG--LLGLGSRLLMVMEDMGICRNQETYEILLDYH----VNA---GR 197 (532)
Q Consensus 127 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~----~~~---~~ 197 (532)
..++|+++++.++..+ +.+...|+.--..+...| +++++++.++.+....+ .+..+|+.--..+ ... ++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhccccCC
Confidence 3468999999998875 456677888888888888 89999999999887654 4555676655555 444 67
Q ss_pred hHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC------HH
Q 009556 198 LDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWK--KAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGE------LV 269 (532)
Q Consensus 198 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------~~ 269 (532)
+++++++++.+.+...+ +..+|+.-.-.+.+.|.++ ++++.++.+.+.+. .|-..|+.-...+.+.+. ++
T Consensus 126 ~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 126 PYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp THHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhHH
Confidence 78888888888776433 6666766666666777776 77777777777653 366677666666655555 66
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 009556 270 EALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAK-ALELFTQMQEQG--FYPDPKIFITIISCLGELGKWDVIKKNFE 346 (532)
Q Consensus 270 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 346 (532)
++++.++++....+. |...|+.+-..+.+.|+... +.++..++.+.+ -..+...+..+...+.+.|+.++|.++++
T Consensus 204 eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 204 EELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 666666666654333 56666666666666555333 333444433221 12244555555555555566666666666
Q ss_pred HHHh
Q 009556 347 NMKD 350 (532)
Q Consensus 347 ~~~~ 350 (532)
.+.+
T Consensus 283 ~l~~ 286 (306)
T 3dra_A 283 LLKS 286 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5554
No 104
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.86 E-value=2.5e-07 Score=80.24 Aligned_cols=175 Identities=14% Similarity=-0.010 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcC----ChhHHHHHH
Q 009556 95 EAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKG----LLGLGSRLL 170 (532)
Q Consensus 95 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~ 170 (532)
+|++.|++..+.| ++..+..+...+...+++++|+++|++..+.| +...+..|...|.. + +.++|.+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4566666666643 56666666777777777777777777776643 44555556666655 4 666666666
Q ss_pred HHHHHcCCCcCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCC-cCHHhHHHHHHHHHc----CCChHHHHHHHH
Q 009556 171 MVMEDMGICRNQETYEILLDYHVN----AGRLDDTWLIINEMRSKGFQ-LNSFVYGKVIGLYRD----NGMWKKAVGIVE 241 (532)
Q Consensus 171 ~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~----~~~~~~a~~~~~ 241 (532)
++..+.| +...+..|...|.. .+++++|++.|++..+.|.. .+...+..|...|.. .+++++|..+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 6665542 44455555555554 55666666666665554321 013444555555554 455555555555
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhcc-C-----CHHHHHHHHHHHHhC
Q 009556 242 EIREMGLSLDRQIYNSIIDTFGKY-G-----ELVEALEVFEKMQQE 281 (532)
Q Consensus 242 ~~~~~~~~~~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~ 281 (532)
+..+. ..+...+..|..+|... | +.++|...|+...+.
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 55544 11223344444444322 1 455555555554443
No 105
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.85 E-value=1.5e-08 Score=82.49 Aligned_cols=142 Identities=8% Similarity=-0.077 Sum_probs=91.4
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhH
Q 009556 86 YCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGL 165 (532)
Q Consensus 86 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 165 (532)
.+...|++++|++.++...... +.+...+..+...|.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHH
Confidence 3445577778887777766442 2234456667777788888888888888877664 4566777777777777788888
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHH-HHHHHHCCCCcCHHhHHHHHHHHHcCC
Q 009556 166 GSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLI-INEMRSKGFQLNSFVYGKVIGLYRDNG 231 (532)
Q Consensus 166 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~-~~~m~~~~~~~~~~~~~~ll~~~~~~~ 231 (532)
|...|++..+..+ -+...|..+...|.+.|+.++|.+. +++..+.... +..+|......+...|
T Consensus 84 A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 84 AVECYRRSVELNP-TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence 8777777776543 3456677777777777777655544 4555554221 4455555555544444
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.84 E-value=1e-07 Score=96.38 Aligned_cols=153 Identities=12% Similarity=0.007 Sum_probs=92.2
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHH
Q 009556 91 GDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLL 170 (532)
Q Consensus 91 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 170 (532)
|++++|++.|++..+.. +.+...|..+...+...|++++|.+.|++..+.. +.+...+..+...|...|++++|.+.|
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 66777777777766553 3446667777777777777777777777777654 345666777777777777777777777
Q ss_pred HHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcC---CChHHHHHHHHHHHHcC
Q 009556 171 MVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDN---GMWKKAVGIVEEIREMG 247 (532)
Q Consensus 171 ~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~ 247 (532)
++..+... .+...|..+...|.+.|++++|.+.|++..+... .+...+..+...+... |+.++|.+.+++..+.+
T Consensus 81 ~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 77766532 3456677777777777777777777777766532 2456666677777777 77777777777776654
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.84 E-value=1e-07 Score=87.13 Aligned_cols=167 Identities=7% Similarity=-0.032 Sum_probs=121.6
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHH-H
Q 009556 109 HPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYE-I 187 (532)
Q Consensus 109 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~ 187 (532)
+.+...+..+...+...|++++|.+.|++..+.. +.+...+..+...+.+.|++++|...++++.... |+..... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 4455667777778888888888888888887765 4566778888888888888888888888876643 3433322 2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccC
Q 009556 188 LLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSL-DRQIYNSIIDTFGKYG 266 (532)
Q Consensus 188 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g 266 (532)
....+.+.++.++|...+++...... .+...+..+...+...|++++|...+.++.+..... +...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 23335667777778888888777632 267778888888888888888888888888764321 2567888888888888
Q ss_pred CHHHHHHHHHHHH
Q 009556 267 ELVEALEVFEKMQ 279 (532)
Q Consensus 267 ~~~~A~~~~~~m~ 279 (532)
+.++|...|++..
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 8888888777654
No 108
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.83 E-value=4.1e-07 Score=79.74 Aligned_cols=184 Identities=13% Similarity=0.033 Sum_probs=120.3
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh---Hh
Q 009556 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPS----SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKL---RF 149 (532)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~---~~ 149 (532)
...+..+...+.+.|++++|+..|+++.+.. |+ ...+..+..++.+.|++++|++.|+++.+.. +.+. ..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a 80 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYV 80 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHH
Confidence 3445567778889999999999999998763 32 3578888899999999999999999998764 1122 23
Q ss_pred HHHHHHHHHh------------------cCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 009556 150 YNILLRGFLK------------------KGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSK 211 (532)
Q Consensus 150 ~~~li~~~~~------------------~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 211 (532)
+..+..++.+ .|+.++|...|+++.+..+ -+...+....... .+...+
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P-~~~~a~~a~~~l~----------~~~~~~--- 146 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYP-NSQYTTDATKRLV----------FLKDRL--- 146 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCT-TCTTHHHHHHHHH----------HHHHHH---
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCc-CChhHHHHHHHHH----------HHHHHH---
Confidence 4444444443 4556666666666665321 1111121111000 000000
Q ss_pred CCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 009556 212 GFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLD--RQIYNSIIDTFGKYGELVEALEVFEKMQQES 282 (532)
Q Consensus 212 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 282 (532)
......+...+.+.|++++|...|+.+.+...... ...+..+..+|.+.|+.++|.+.++.+...+
T Consensus 147 -----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 -----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred -----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 01113456678889999999999999887642211 2467788889999999999999999888764
No 109
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.83 E-value=5.5e-07 Score=78.01 Aligned_cols=176 Identities=11% Similarity=0.009 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC----ChHHHHHHH
Q 009556 130 EADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAG----RLDDTWLII 205 (532)
Q Consensus 130 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~----~~~~a~~~~ 205 (532)
+|++.|++..+. -+...+..|...|...+++++|.+.|++..+.| +...+..|...|.. + ++++|.+.|
T Consensus 4 eA~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 455666666654 345566666666666777777777777766643 44555555555555 4 666666666
Q ss_pred HHHHHCCCCcCHHhHHHHHHHHHc----CCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhc----cCCHHHHHHHHH
Q 009556 206 NEMRSKGFQLNSFVYGKVIGLYRD----NGMWKKAVGIVEEIREMGLS-LDRQIYNSIIDTFGK----YGELVEALEVFE 276 (532)
Q Consensus 206 ~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~ 276 (532)
++..+.| +...+..+...|.. .+++++|.++|++..+.+.. .+...+..|...|.. .++.++|...|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 6665543 44555555555554 55666666666666655421 014555555555555 556666666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHCC
Q 009556 277 KMQQESIRPDIVTWNSLIRWHCKA-G-----DVAKALELFTQMQEQG 317 (532)
Q Consensus 277 ~m~~~~~~p~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~~ 317 (532)
+..+.+ .+...+..|...|... | ++++|..+|++..+.|
T Consensus 154 ~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 655541 1233444454444432 2 5666666666655544
No 110
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.81 E-value=5.1e-08 Score=81.84 Aligned_cols=78 Identities=15% Similarity=0.178 Sum_probs=47.3
Q ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcChHHHHHHHHH
Q 009556 411 TVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISP-DLVTYSTLMKAFIRAKKFHKVPEIYKQME 489 (532)
Q Consensus 411 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 489 (532)
|.+.+++..+.. +.+...+..+..++...|++++|...|+++.+....+ +...+..+...+...|+.++|...|++..
T Consensus 93 a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 93 ELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 455555555432 2345666666667777777777777777666543322 23456666667777777777777666554
No 111
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.81 E-value=1.1e-07 Score=86.77 Aligned_cols=168 Identities=10% Similarity=0.020 Sum_probs=131.0
Q ss_pred CCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHH-H
Q 009556 144 NPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYG-K 222 (532)
Q Consensus 144 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~ 222 (532)
+.+...+..+...+.+.|++++|...|++..+... .+...+..+...+.+.|++++|...+++.... .|+..... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 45566777888888899999999999999887644 46678888999999999999999999988665 34443322 2
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcC
Q 009556 223 VIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRP-DIVTWNSLIRWHCKAG 301 (532)
Q Consensus 223 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g 301 (532)
....+...++.++|...+++..+.. +.+...+..+...|...|++++|++.|.++.+..... +...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 2334667778888888898888775 4478888889999999999999999999988753321 2567888999999999
Q ss_pred CHHHHHHHHHHHHH
Q 009556 302 DVAKALELFTQMQE 315 (532)
Q Consensus 302 ~~~~A~~~~~~m~~ 315 (532)
+.++|...+++...
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 99999888887553
No 112
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.80 E-value=6.8e-08 Score=89.26 Aligned_cols=55 Identities=7% Similarity=0.023 Sum_probs=28.1
Q ss_pred HHHhccCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009556 260 DTFGKYGELVEALEVFEKMQQE----SIRP-DIVTWNSLIRWHCKAGDVAKALELFTQMQ 314 (532)
Q Consensus 260 ~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 314 (532)
..|...|++++|...|.+..+. +-.+ -..+|+.+...|...|++++|+..+++..
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al 103 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKAS 103 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3455566666666666554432 1000 12345555555555666666666665544
No 113
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.77 E-value=1.2e-06 Score=76.78 Aligned_cols=188 Identities=9% Similarity=-0.024 Sum_probs=123.8
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-ChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCH--HHHH
Q 009556 111 SSISYASLIEALASVGRTLEADAIFQEMVCFGFN-P-KLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQ--ETYE 186 (532)
Q Consensus 111 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~ 186 (532)
+...+..+...+...|++++|+..|+++.+.... + ....+..+..+|.+.|++++|...|+++.+..+.... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3455666778888999999999999999875411 1 1356778889999999999999999999876432211 2344
Q ss_pred HHHHHHHh------------------cCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCC
Q 009556 187 ILLDYHVN------------------AGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGL 248 (532)
Q Consensus 187 ~li~~~~~------------------~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 248 (532)
.+...+.+ .|++++|...|+++.+.... +.......... ..+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----------~~~~~~~~---- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----------VFLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----------HHHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----------HHHHHHHH----
Confidence 44444443 45666777777766655211 11111111100 00000000
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 009556 249 SLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPD--IVTWNSLIRWHCKAGDVAKALELFTQMQEQG 317 (532)
Q Consensus 249 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 317 (532)
.....+...|.+.|++++|...|+++.+...... ...+..+..++.+.|++++|.+.++.+...+
T Consensus 148 ----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 ----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 1123456788999999999999999987532211 2467889999999999999999999988764
No 114
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.77 E-value=4.5e-08 Score=79.65 Aligned_cols=142 Identities=11% Similarity=-0.069 Sum_probs=79.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHH
Q 009556 121 ALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDD 200 (532)
Q Consensus 121 ~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 200 (532)
.+...|++++|++.++...... +.+...+-.+...|.+.|++++|.+.|++..+..+ -+..+|..+...|.+.|++++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCchHH
Confidence 3344566666666666655432 12334455566666666777777777666665433 355566666666666666666
Q ss_pred HHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHH-HHHHHHcCCCCCHHHHHHHHHHHhccC
Q 009556 201 TWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGI-VEEIREMGLSLDRQIYNSIIDTFGKYG 266 (532)
Q Consensus 201 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~li~~~~~~g 266 (532)
|...|++..+.... +..++..+...+.+.|+++++.+. +++..+.. +-+..+|......+...|
T Consensus 84 A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 84 AVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 66666666654322 455566666666666666544433 35555543 224455554444444444
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.75 E-value=3.1e-07 Score=84.83 Aligned_cols=225 Identities=10% Similarity=-0.001 Sum_probs=112.4
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHH
Q 009556 90 LGDIDEAMALLAQMQALGFHPSSISYASLIEALAS-VGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSR 168 (532)
Q Consensus 90 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 168 (532)
.|++++|.+++++..+.. +.. +.. .++++.|...|... ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 467788888888776532 110 011 34455555554443 233444555555555
Q ss_pred HHHHHHHc----CCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCc-CHHhHHHHHHHHHcCCChHHHHH
Q 009556 169 LLMVMEDM----GICR-NQETYEILLDYHVNAGRLDDTWLIINEMRSK----GFQL-NSFVYGKVIGLYRDNGMWKKAVG 238 (532)
Q Consensus 169 ~~~~m~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~ 238 (532)
.|.+..+. +-.+ -..+|+.+...|.+.|++++|+..|++..+. |-.. -..++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 55544332 1000 1234555555555556665555555554321 1110 12345555555555 66666666
Q ss_pred HHHHHHHcCCCC-----CHHHHHHHHHHHhccCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCCHHHHHH
Q 009556 239 IVEEIREMGLSL-----DRQIYNSIIDTFGKYGELVEALEVFEKMQQE----SIRPD-IVTWNSLIRWHCKAGDVAKALE 308 (532)
Q Consensus 239 ~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~ 308 (532)
.|++..+..... ...+++.+...|.+.|++++|+..|++..+. +..+. ...+..+...+...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 666654421100 1345666666677777777777777665542 11111 1245555566666677777777
Q ss_pred HHHHHHHCCCC--CC--HHHHHHHHHHHHccCCHHHHHH
Q 009556 309 LFTQMQEQGFY--PD--PKIFITIISCLGELGKWDVIKK 343 (532)
Q Consensus 309 ~~~~m~~~~~~--~~--~~~~~~ll~~~~~~~~~~~a~~ 343 (532)
.|++.. .... .. ......++.++ ..++.+....
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 777765 3211 11 12233444444 4556555554
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.74 E-value=7.7e-07 Score=77.07 Aligned_cols=131 Identities=11% Similarity=-0.105 Sum_probs=109.8
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHH
Q 009556 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGF 157 (532)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 157 (532)
..+..+...+.+.|++++|++.|++.. .|+...+..+...+...|++++|.+.|++..+.. +.+...+..+..+|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 345567778889999999999998874 5688899999999999999999999999998765 55778899999999
Q ss_pred HhcCChhHHHHHHHHHHHcCCC--------------c-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 009556 158 LKKGLLGLGSRLLMVMEDMGIC--------------R-NQETYEILLDYHVNAGRLDDTWLIINEMRSKGF 213 (532)
Q Consensus 158 ~~~g~~~~A~~~~~~m~~~~~~--------------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 213 (532)
...|++++|.+.|++..+.... | ....+..+...+.+.|++++|.+.|++..+...
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 9999999999999999875321 1 226788888899999999999999999887643
No 117
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.73 E-value=3.5e-07 Score=92.52 Aligned_cols=154 Identities=8% Similarity=-0.035 Sum_probs=118.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 009556 125 VGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLI 204 (532)
Q Consensus 125 ~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 204 (532)
.|++++|.+.+++..+.. +.+...+..+...+.+.|++++|.+.|++..+... .+...|..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999988764 45678899999999999999999999999988643 4677899999999999999999999
Q ss_pred HHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc---CCHHHHHHHHHHHHhC
Q 009556 205 INEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKY---GELVEALEVFEKMQQE 281 (532)
Q Consensus 205 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~ 281 (532)
+++..+.... +...+..+..++...|++++|.+.+++..+.. +.+...+..+...+... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999886432 67888999999999999999999999998875 34678888999999999 9999999999998875
Q ss_pred C
Q 009556 282 S 282 (532)
Q Consensus 282 ~ 282 (532)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
No 118
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.71 E-value=1.3e-05 Score=73.83 Aligned_cols=183 Identities=10% Similarity=-0.035 Sum_probs=129.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCChHhHHHHHHHHH
Q 009556 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVG-RTLEADAIFQEMVCFGFNPKLRFYNILLRGFL 158 (532)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 158 (532)
++.+-....+.+..++|+++++.+...+ +-+..+|+.--..+...| .+++++++++.+.... +-+..+|+.-...+.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 3443334444556678999999999885 556777888888888888 5999999999999876 567788888777777
Q ss_pred hc-C-ChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChH--------HHHHHHHHHHHCCCCcCHHhHHHHHHHHH
Q 009556 159 KK-G-LLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLD--------DTWLIINEMRSKGFQLNSFVYGKVIGLYR 228 (532)
Q Consensus 159 ~~-g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~--------~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 228 (532)
+. + ++++++++++.+.+... .|..+|+.-...+.+.|.++ ++++.++++.+..+. |...|+.....+.
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRV 212 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHT
T ss_pred HhcCCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 76 7 88899999999987654 57778877666666655555 777777777776443 6666766666666
Q ss_pred cCCC-------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 009556 229 DNGM-------WKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGE 267 (532)
Q Consensus 229 ~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 267 (532)
+.+. ++++++.++++.... +-|...|+-+-..+.+.|.
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 6654 566666666666654 3366666655555554443
No 119
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.69 E-value=8.6e-07 Score=73.13 Aligned_cols=130 Identities=11% Similarity=0.002 Sum_probs=98.1
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHH
Q 009556 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (532)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (532)
...|..+...+...|++++|+..|++..+.. +.+..++..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 4557778888888999999999999888764 4567788888888888999999999998888765 4567778888888
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCcCHHHHH--HHHHHHHhcCChHHHHHHHHHHH
Q 009556 157 FLKKGLLGLGSRLLMVMEDMGICRNQETYE--ILLDYHVNAGRLDDTWLIINEMR 209 (532)
Q Consensus 157 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~ 209 (532)
+...|++++|.+.|++..+... .+...+. .+...+.+.|++++|++.+....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 8888888888888888877543 2344443 33334666777788777776653
No 120
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.68 E-value=7.6e-07 Score=69.76 Aligned_cols=98 Identities=11% Similarity=-0.004 Sum_probs=77.3
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHH
Q 009556 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGF 157 (532)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 157 (532)
..|......|.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|++.|++.++.. +.+...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 456777778888888888888888887765 5567788888888888888888888888888765 45667788888888
Q ss_pred HhcCChhHHHHHHHHHHHcC
Q 009556 158 LKKGLLGLGSRLLMVMEDMG 177 (532)
Q Consensus 158 ~~~g~~~~A~~~~~~m~~~~ 177 (532)
...|++++|.+.|++..+..
T Consensus 92 ~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHHHHHHHC
Confidence 88888888888888877753
No 121
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.67 E-value=1e-06 Score=68.47 Aligned_cols=113 Identities=17% Similarity=0.131 Sum_probs=80.9
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHH
Q 009556 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (532)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (532)
...|..+...+.+.|++++|++.|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 4567777788888888888888888887764 4466777788888888888888888888877654 4466677777777
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 009556 157 FLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYH 192 (532)
Q Consensus 157 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 192 (532)
+...|++++|...|+++.+... .+...+..+...+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~ 121 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAK 121 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence 8888888888888877766532 3344444444443
No 122
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.67 E-value=9.3e-07 Score=69.76 Aligned_cols=122 Identities=9% Similarity=-0.053 Sum_probs=97.5
Q ss_pred CCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHH
Q 009556 72 GEEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYN 151 (532)
Q Consensus 72 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~ 151 (532)
....+...|..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 88 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYT 88 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHH
Confidence 345567788999999999999999999999998764 4577888899999999999999999999998765 45678888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC
Q 009556 152 ILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAG 196 (532)
Q Consensus 152 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 196 (532)
.+..++.+.|++++|.+.|++..+... .+...+..+...+.+.|
T Consensus 89 ~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 89 RKAAALEAMKDYTKAMDVYQKALDLDS-SCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCG-GGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHhc
Confidence 888899999999999999998877532 33455666666555443
No 123
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.63 E-value=7.5e-06 Score=74.85 Aligned_cols=160 Identities=10% Similarity=0.002 Sum_probs=68.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCC-CcCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCc-C----HHhHHHH
Q 009556 154 LRGFLKKGLLGLGSRLLMVMEDMGI-CRNQ----ETYEILLDYHVNAGRLDDTWLIINEMRSKGFQL-N----SFVYGKV 223 (532)
Q Consensus 154 i~~~~~~g~~~~A~~~~~~m~~~~~-~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~----~~~~~~l 223 (532)
+..+...|++++|.+++++..+... .|+. ..+..+...+...+++++|+..|++........ + ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4445555556666655555554211 1111 112223444444455555555555555422111 1 1134455
Q ss_pred HHHHHcCCChHHHHHHHHHHHHc-----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhC----CCCCC-HHHHHH
Q 009556 224 IGLYRDNGMWKKAVGIVEEIREM-----GLSL-DRQIYNSIIDTFGKYGELVEALEVFEKMQQE----SIRPD-IVTWNS 292 (532)
Q Consensus 224 l~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~ 292 (532)
...|...|++++|...++++.+. +..+ ...++..+...|.+.|++++|...+++..+. +..+. ...|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 55555555555555555554421 0000 1123444444555555555555554443321 11111 334444
Q ss_pred HHHHHHHcCC-HHHHHHHHHHH
Q 009556 293 LIRWHCKAGD-VAKALELFTQM 313 (532)
Q Consensus 293 li~~~~~~g~-~~~A~~~~~~m 313 (532)
+..++.+.|+ +++|.+.+++.
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHH
Confidence 4444444442 34554444443
No 124
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.61 E-value=3.7e-05 Score=70.71 Aligned_cols=172 Identities=10% Similarity=-0.002 Sum_probs=126.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc-C-ChHHHH
Q 009556 126 GRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKG-LLGLGSRLLMVMEDMGICRNQETYEILLDYHVNA-G-RLDDTW 202 (532)
Q Consensus 126 ~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-~-~~~~a~ 202 (532)
+..++|+++++.++..+ +.+..+|+.--..+...| ++++++++++.+..... .+..+|+.-...+.+. + ++++++
T Consensus 68 e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 68 EKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChHHHH
Confidence 34468999999999876 456677888888888888 59999999999998755 5777888887777776 6 889999
Q ss_pred HHHHHHHHCCCCcCHHhHHHHHHHHHcCCChH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC-------
Q 009556 203 LIINEMRSKGFQLNSFVYGKVIGLYRDNGMWK--------KAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGE------- 267 (532)
Q Consensus 203 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------- 267 (532)
++++.+.+...+ |..+|+.-.-.+.+.+.++ ++++.++++.+.. +.|...|+.....+.+.++
T Consensus 146 ~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 146 EYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHH
Confidence 999999877543 6667766555555555555 7888888888775 3477788887777777765
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 009556 268 LVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGD 302 (532)
Q Consensus 268 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 302 (532)
++++++.+++....... |...|+-+-..+.+.|.
T Consensus 224 ~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 224 LQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence 67777777777665332 66667665555555554
No 125
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.61 E-value=2.8e-06 Score=77.78 Aligned_cols=126 Identities=10% Similarity=-0.001 Sum_probs=60.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCC-CCCH----hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----hHhHHH
Q 009556 83 SIQYCCKLGDIDEAMALLAQMQALGF-HPSS----ISYASLIEALASVGRTLEADAIFQEMVCFGFN-PK----LRFYNI 152 (532)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~----~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~-~~----~~~~~~ 152 (532)
.+..+...|++++|...+++...... .++. ..+..+...+...+++++|++.|++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 34555666666666666666554321 1111 11223444444555666666666666553211 11 124555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc-----CCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 009556 153 LLRGFLKKGLLGLGSRLLMVMEDM-----GICR-NQETYEILLDYHVNAGRLDDTWLIINEM 208 (532)
Q Consensus 153 li~~~~~~g~~~~A~~~~~~m~~~-----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m 208 (532)
+...|...|++++|...|+++.+. +..+ ...+|..+...|.+.|++++|...+++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~a 222 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 555666666666666655555421 1111 1124444555555555555555555444
No 126
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.59 E-value=1.7e-06 Score=67.92 Aligned_cols=119 Identities=8% Similarity=0.045 Sum_probs=88.7
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHH
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (532)
+...|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|.+.++...+.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 45567777888888888888888888887764 4467778888888888888888888888887754 445677777788
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC
Q 009556 156 GFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGR 197 (532)
Q Consensus 156 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 197 (532)
.+.+.|++++|.+.|++..+... .+...+..+...+.+.|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhc
Confidence 88888888888888888776543 355566666666666554
No 127
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.59 E-value=5.6e-07 Score=75.43 Aligned_cols=135 Identities=9% Similarity=0.092 Sum_probs=98.0
Q ss_pred HhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHH-HHhcCCH--H
Q 009556 368 GQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINA-FGVAGKY--K 444 (532)
Q Consensus 368 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~--~ 444 (532)
...|++++|...++...+.. +.+...|..+...|...|++++|...+++..+.. +.+...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 35678888888888877764 3466778888888889999999999998887653 3466777778888 7788888 9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 009556 445 EALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSAL 507 (532)
Q Consensus 445 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~a~ 507 (532)
+|...++++.+.. +.+...+..+...+...|++++|...++++.+. .|+......++..+
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~i 158 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL--NSPRINRTQLVESI 158 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CCTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh--CCCCccHHHHHHHH
Confidence 9999999888753 235677888888899999999999999998873 44433333444433
No 128
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.57 E-value=4e-06 Score=72.44 Aligned_cols=129 Identities=13% Similarity=-0.050 Sum_probs=101.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 009556 114 SYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHV 193 (532)
Q Consensus 114 ~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 193 (532)
.+..+...+...|++++|.+.|++.. .|+...+..+...|.+.|++++|.+.|++..+... .+...|..+...+.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHH
Confidence 35566777788899999999888774 56788888899999999999999999998887643 56778888888899
Q ss_pred hcCChHHHHHHHHHHHHCCCC--------------c-CHHhHHHHHHHHHcCCChHHHHHHHHHHHHcC
Q 009556 194 NAGRLDDTWLIINEMRSKGFQ--------------L-NSFVYGKVIGLYRDNGMWKKAVGIVEEIREMG 247 (532)
Q Consensus 194 ~~~~~~~a~~~~~~m~~~~~~--------------~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 247 (532)
..|++++|.+.|++..+.... | ....+..+..++...|++++|...++...+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999999999888875322 1 12567777778888888888888888887764
No 129
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.57 E-value=6.3e-07 Score=81.48 Aligned_cols=97 Identities=9% Similarity=-0.071 Sum_probs=71.8
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHH
Q 009556 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (532)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (532)
...+..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|.+.+++..+.. +.+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4556677777788888888888888877763 3467777777888888888888888888877654 4456677777777
Q ss_pred HHhcCChhHHHHHHHHHHH
Q 009556 157 FLKKGLLGLGSRLLMVMED 175 (532)
Q Consensus 157 ~~~~g~~~~A~~~~~~m~~ 175 (532)
|...|++++|...|++..+
T Consensus 82 ~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7777787777777777665
No 130
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.56 E-value=1.5e-05 Score=72.78 Aligned_cols=164 Identities=7% Similarity=-0.027 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC---CC--Hh
Q 009556 289 TWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDP-----KIFITIISCLGELGKWDVIKKNFENMKDRGHG---KI--GA 358 (532)
Q Consensus 289 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~~ 358 (532)
.+...+..+...|++++|.+.+.+..+.....+. ..+..+...+...|++++|...+.+..+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3445566667777777777777766654221111 11222334445556666666666665532111 11 22
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHH---cCCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHhccCC----CCC-CH
Q 009556 359 IYAILVDIYGQYGRFRDPEECIAALKL---EGLQ-P--SGSMFCILANAYAQQGLCEQTVKVLQLMEPEG----IEP-NL 427 (532)
Q Consensus 359 ~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~-~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~p-~~ 427 (532)
+++.+...|...|++++|...+++..+ .... + ...++..+...|...|++++|.+.+++..+.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 444555555555555555555554431 1100 0 01234444445555555555555544433210 000 13
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHH
Q 009556 428 VMLNVLINAFGVAGKYKEA-LSVYHL 452 (532)
Q Consensus 428 ~~~~~li~~~~~~g~~~~A-~~~~~~ 452 (532)
.+|..+..+|...|++++| ...+++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 3444444455555555554 333443
No 131
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.55 E-value=1.5e-06 Score=72.82 Aligned_cols=122 Identities=7% Similarity=0.012 Sum_probs=99.7
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHH-HHhcCCh--h
Q 009556 88 CKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG-FLKKGLL--G 164 (532)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~-~~~~g~~--~ 164 (532)
...|++++|+..+++..+.. +.+...|..+...+...|++++|...|++..+.. +.+...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 45789999999999988775 5677889999999999999999999999998765 4567788888888 7788998 9
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 009556 165 LGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKG 212 (532)
Q Consensus 165 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 212 (532)
+|...|++..+... .+...+..+...+...|++++|...|++..+..
T Consensus 99 ~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 99999999887643 456788888899999999999999999988764
No 132
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.55 E-value=1e-06 Score=75.54 Aligned_cols=156 Identities=14% Similarity=-0.050 Sum_probs=91.5
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CChHhHHHHHHHHHhcCC
Q 009556 88 CKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCF----GFN-PKLRFYNILLRGFLKKGL 162 (532)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----g~~-~~~~~~~~li~~~~~~g~ 162 (532)
...|++++|.+.++.+... ......++..+...+...|++++|...+++..+. +.. ....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4578888888855554332 1234567778888888888888888888877651 111 234556677777777888
Q ss_pred hhHHHHHHHHHHHc----CCCc--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCc-CHHhHHHHHHHHHcCC
Q 009556 163 LGLGSRLLMVMEDM----GICR--NQETYEILLDYHVNAGRLDDTWLIINEMRSK----GFQL-NSFVYGKVIGLYRDNG 231 (532)
Q Consensus 163 ~~~A~~~~~~m~~~----~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~ 231 (532)
+++|.+.+++..+. +-.+ ....+..+...+...|++++|...+++.... +... -..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 88887777776543 1111 2334666666777777777777777665432 1100 1122344455555556
Q ss_pred ChHHHHHHHHHHH
Q 009556 232 MWKKAVGIVEEIR 244 (532)
Q Consensus 232 ~~~~a~~~~~~~~ 244 (532)
++++|.+.+++..
T Consensus 162 ~~~~A~~~~~~al 174 (203)
T 3gw4_A 162 NLLEAQQHWLRAR 174 (203)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 6666655555544
No 133
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.55 E-value=1.1e-06 Score=71.02 Aligned_cols=98 Identities=8% Similarity=-0.055 Sum_probs=67.5
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHH
Q 009556 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (532)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (532)
...|..+...+.+.|++++|+..|+++.... +.+...|..+..++...|++++|++.|++..+.. +.+...|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 3455666666777777777777777777664 4456677777777777777777777777777654 3456666777777
Q ss_pred HHhcCChhHHHHHHHHHHHc
Q 009556 157 FLKKGLLGLGSRLLMVMEDM 176 (532)
Q Consensus 157 ~~~~g~~~~A~~~~~~m~~~ 176 (532)
|.+.|++++|...|++..+.
T Consensus 114 ~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 77777777777777776664
No 134
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.54 E-value=1.3e-05 Score=73.30 Aligned_cols=126 Identities=10% Similarity=-0.034 Sum_probs=56.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCC---cC--HHHHHHHHHHHHhcCChHHHHHHHHHHHH---C-CCCc--CHHhHH
Q 009556 153 LLRGFLKKGLLGLGSRLLMVMEDMGIC---RN--QETYEILLDYHVNAGRLDDTWLIINEMRS---K-GFQL--NSFVYG 221 (532)
Q Consensus 153 li~~~~~~g~~~~A~~~~~~m~~~~~~---~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~-~~~~--~~~~~~ 221 (532)
+...+...|++++|...+++..+.... +. ..+|+.+...|...|++++|...|++..+ . +..+ ...++.
T Consensus 121 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~ 200 (293)
T 2qfc_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHH
Confidence 334444445555555555544432110 11 22445555555555555555555554431 1 0000 113445
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcC----CCC-CHHHHHHHHHHHhccCCHHHH-HHHHHHH
Q 009556 222 KVIGLYRDNGMWKKAVGIVEEIREMG----LSL-DRQIYNSIIDTFGKYGELVEA-LEVFEKM 278 (532)
Q Consensus 222 ~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~li~~~~~~g~~~~A-~~~~~~m 278 (532)
.+...|...|++++|...+++..+.. ... -..+|..+...|.+.|+.++| ...+++.
T Consensus 201 nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 55555555555555555555544321 000 134555555556666666555 4444443
No 135
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.54 E-value=3.9e-06 Score=69.10 Aligned_cols=128 Identities=6% Similarity=-0.010 Sum_probs=77.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 009556 113 ISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYH 192 (532)
Q Consensus 113 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 192 (532)
..+..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|.+.+++..+... .+...|..+...+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 345566667777777777777777776654 34566667777777777777777777777666432 3455666666666
Q ss_pred HhcCChHHHHHHHHHHHHCCCCcCHHhHH--HHHHHHHcCCChHHHHHHHHHH
Q 009556 193 VNAGRLDDTWLIINEMRSKGFQLNSFVYG--KVIGLYRDNGMWKKAVGIVEEI 243 (532)
Q Consensus 193 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~ 243 (532)
...|++++|...|++..+.... +...+. .....+...|++++|.+.+...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 6677777777776666654221 222332 2222244455555555555443
No 136
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.54 E-value=8.8e-07 Score=71.70 Aligned_cols=102 Identities=15% Similarity=0.159 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009556 393 SMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAF 472 (532)
Q Consensus 393 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 472 (532)
..+..+...+.+.|++++|.+.|++..... +.+...|..+..+|...|++++|...|++..+... .++..|..+..+|
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-NDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHH
Confidence 456666677777788888888887777653 44667777777788888888888888887776532 2456677777778
Q ss_pred HhcCCcChHHHHHHHHHhCCCCCCHH
Q 009556 473 IRAKKFHKVPEIYKQMESSGCTPDRK 498 (532)
Q Consensus 473 ~~~g~~~~a~~~~~~m~~~g~~p~~~ 498 (532)
.+.|++++|.+.|++..+ +.||..
T Consensus 115 ~~lg~~~eA~~~~~~al~--l~~~~~ 138 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQ--HSNDEK 138 (151)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCCCHH
T ss_pred HHcCCHHHHHHHHHHHHH--hCCCHH
Confidence 888888888888888776 446654
No 137
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.53 E-value=3.7e-06 Score=65.77 Aligned_cols=97 Identities=8% Similarity=-0.134 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 009556 113 ISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYH 192 (532)
Q Consensus 113 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 192 (532)
..+......+.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|+..|++..+... .+...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHHH
Confidence 345566667777777777777777776654 44566666677777777777777777776666433 3455666666666
Q ss_pred HhcCChHHHHHHHHHHHHC
Q 009556 193 VNAGRLDDTWLIINEMRSK 211 (532)
Q Consensus 193 ~~~~~~~~a~~~~~~m~~~ 211 (532)
...|++++|.+.|++..+.
T Consensus 92 ~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 6666666666666666654
No 138
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.51 E-value=4.3e-06 Score=64.86 Aligned_cols=98 Identities=14% Similarity=0.082 Sum_probs=63.3
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 009556 112 SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDY 191 (532)
Q Consensus 112 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 191 (532)
...+..+...+...|++++|.+.++++.+.. +.+..++..+...+.+.|++++|...|+++.+... .+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHH
Confidence 4556666667777777777777777776543 34556666666677777777777777766665432 345566666666
Q ss_pred HHhcCChHHHHHHHHHHHHC
Q 009556 192 HVNAGRLDDTWLIINEMRSK 211 (532)
Q Consensus 192 ~~~~~~~~~a~~~~~~m~~~ 211 (532)
+...|++++|...++++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 66666666666666666554
No 139
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.49 E-value=1.9e-06 Score=76.59 Aligned_cols=187 Identities=10% Similarity=-0.078 Sum_probs=106.7
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHhHHHHH-------HHHHHhcCCHHHHHHHHHHHHHCCCCCC---------------
Q 009556 89 KLGDIDEAMALLAQMQALGFHPSSISYASL-------IEALASVGRTLEADAIFQEMVCFGFNPK--------------- 146 (532)
Q Consensus 89 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l-------i~~~~~~~~~~~A~~~~~~~~~~g~~~~--------------- 146 (532)
+.++...|.+.|.++.+.. +-....|..+ ...+...++..+++..+..-.+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 5788999999999988875 4556778777 4666666666666655555443 2221
Q ss_pred -------hHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcC--H
Q 009556 147 -------LRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLN--S 217 (532)
Q Consensus 147 -------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~ 217 (532)
......+...+...|++++|.++|+.+...+ |+....-.+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1123345556666777777777776665533 332244444556666677777776666433321 110 2
Q ss_pred HhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 009556 218 FVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLD--RQIYNSIIDTFGKYGELVEALEVFEKMQQE 281 (532)
Q Consensus 218 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 281 (532)
..+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 2455555566666666666666666654322132 223444445555666666666666666553
No 140
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.47 E-value=3.9e-06 Score=78.40 Aligned_cols=129 Identities=9% Similarity=-0.076 Sum_probs=68.1
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---------------hHhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 009556 112 SISYASLIEALASVGRTLEADAIFQEMVCFGFNPK---------------LRFYNILLRGFLKKGLLGLGSRLLMVMEDM 176 (532)
Q Consensus 112 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 176 (532)
...+..+...+.+.|++++|...|++..+.. +.+ ...|..+..+|.+.|++++|+..|++..+.
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4445555555555555555555555555433 111 345555555666666666666666655554
Q ss_pred CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHH-HHHHHHH
Q 009556 177 GICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKA-VGIVEEI 243 (532)
Q Consensus 177 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a-~~~~~~~ 243 (532)
.. .+...|..+..+|...|++++|...|++..+.... +...+..+..++...|+.+++ ...++.|
T Consensus 226 ~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 226 DS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 34555555555666666666666666665554221 444555555555555555555 3344444
No 141
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.47 E-value=1.8e-06 Score=78.37 Aligned_cols=99 Identities=11% Similarity=-0.033 Sum_probs=71.8
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 009556 111 SSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLD 190 (532)
Q Consensus 111 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 190 (532)
+...+..+...+...|++++|...|++..+.. +.+...|..+..+|.+.|++++|...+++..+... .+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 45566777777778888888888888877654 34667777777778888888888888877776533 45667777777
Q ss_pred HHHhcCChHHHHHHHHHHHHC
Q 009556 191 YHVNAGRLDDTWLIINEMRSK 211 (532)
Q Consensus 191 ~~~~~~~~~~a~~~~~~m~~~ 211 (532)
+|...|++++|...|++..+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777776553
No 142
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.46 E-value=2.2e-06 Score=73.46 Aligned_cols=86 Identities=10% Similarity=-0.060 Sum_probs=44.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCC-cCHHHHHHHHHHHHhcCC
Q 009556 123 ASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDM----GIC-RNQETYEILLDYHVNAGR 197 (532)
Q Consensus 123 ~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~~~ 197 (532)
...|++++|.+.++.+.. .......++..+...+...|++++|...+++..+. +.. ....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 345677777774444432 11124456666666667777777777766665541 111 123345555555666666
Q ss_pred hHHHHHHHHHHH
Q 009556 198 LDDTWLIINEMR 209 (532)
Q Consensus 198 ~~~a~~~~~~m~ 209 (532)
+++|.+.+++..
T Consensus 82 ~~~A~~~~~~al 93 (203)
T 3gw4_A 82 WDAARRCFLEER 93 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666665555543
No 143
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.44 E-value=6.8e-06 Score=64.29 Aligned_cols=118 Identities=5% Similarity=-0.149 Sum_probs=69.5
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 009556 112 SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDY 191 (532)
Q Consensus 112 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 191 (532)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+... .+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHHH
Confidence 4455666666667777777777777766543 33556666666666666777777666666665432 345556666666
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCC
Q 009556 192 HVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGM 232 (532)
Q Consensus 192 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 232 (532)
+...|++++|...|++..+... .+...+..+..++...|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhc
Confidence 6666666666666666655422 134444444444444443
No 144
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.44 E-value=1.2e-06 Score=70.88 Aligned_cols=92 Identities=15% Similarity=0.086 Sum_probs=39.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhc
Q 009556 81 NKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKK 160 (532)
Q Consensus 81 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 160 (532)
..+...+.+.|++++|+..|++..... +.+...|..+..++...|++++|++.|++..+.. +.+...+..+..+|...
T Consensus 25 ~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~ 102 (148)
T 2vgx_A 25 YSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLLQX 102 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHc
Confidence 333444444444444444444444332 2334444444444444444444444444444332 22333444444444444
Q ss_pred CChhHHHHHHHHHH
Q 009556 161 GLLGLGSRLLMVME 174 (532)
Q Consensus 161 g~~~~A~~~~~~m~ 174 (532)
|++++|.+.|+...
T Consensus 103 g~~~~A~~~~~~al 116 (148)
T 2vgx_A 103 GELAEAESGLFLAQ 116 (148)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 44444444444443
No 145
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.44 E-value=9.7e-06 Score=62.06 Aligned_cols=99 Identities=14% Similarity=0.007 Sum_probs=72.9
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHH
Q 009556 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (532)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (532)
...|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3456677777788888888888888877664 4466777777778888888888888888877654 3456677777777
Q ss_pred HHhcCChhHHHHHHHHHHHcC
Q 009556 157 FLKKGLLGLGSRLLMVMEDMG 177 (532)
Q Consensus 157 ~~~~g~~~~A~~~~~~m~~~~ 177 (532)
+...|++++|.+.+++..+..
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHhhHHHHHHHHHHHHHcC
Confidence 777777777777777776643
No 146
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.44 E-value=6.2e-06 Score=64.42 Aligned_cols=98 Identities=13% Similarity=-0.028 Sum_probs=76.4
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHH
Q 009556 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (532)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (532)
...|..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|+..+++..+.. +.+...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3456677777888888888888888887764 4567788888888888888888888888888765 4456777788888
Q ss_pred HHhcCChhHHHHHHHHHHHc
Q 009556 157 FLKKGLLGLGSRLLMVMEDM 176 (532)
Q Consensus 157 ~~~~g~~~~A~~~~~~m~~~ 176 (532)
+...|++++|...|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 88888888888888877664
No 147
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.43 E-value=0.00014 Score=66.60 Aligned_cols=138 Identities=9% Similarity=0.040 Sum_probs=88.9
Q ss_pred HHcCChH-HHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCChHhHHHHHHH
Q 009556 88 CKLGDID-EAMALLAQMQALGFHPSSISYASLIEALASVGR----------TLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (532)
Q Consensus 88 ~~~g~~~-~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~----------~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (532)
.+.|+++ +|+++++.+...+ +-+..+|+.--..+...+. +++++.+++.+.... +-+..+|+.-...
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4556665 7888888888764 3445566655444444333 567777777777654 4566777776666
Q ss_pred HHhcCC--hhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHc
Q 009556 157 FLKKGL--LGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGR-LDDTWLIINEMRSKGFQLNSFVYGKVIGLYRD 229 (532)
Q Consensus 157 ~~~~g~--~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 229 (532)
+.+.|+ +++++.+++.+.+... .|..+|+.-..++...|. ++++++.++++.+..+. |...|+.....+..
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~ 191 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQ 191 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHH
T ss_pred HhccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHH
Confidence 666663 6777777777777654 566677777666667776 47777777777766433 55566555444443
No 148
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.43 E-value=5.8e-06 Score=65.03 Aligned_cols=100 Identities=7% Similarity=-0.091 Sum_probs=66.3
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHH
Q 009556 110 PSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILL 189 (532)
Q Consensus 110 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 189 (532)
.+...+..+...+...|++++|.+.|++..+.. +.+...+..+...+...|++++|.+.+++..+... .+...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHH
Confidence 345566677777777777777777777776653 34566666677777777777777777777666432 3455666666
Q ss_pred HHHHhcCChHHHHHHHHHHHHC
Q 009556 190 DYHVNAGRLDDTWLIINEMRSK 211 (532)
Q Consensus 190 ~~~~~~~~~~~a~~~~~~m~~~ 211 (532)
..+.+.|++++|.+.|++..+.
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHh
Confidence 6666777777777776666554
No 149
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.42 E-value=7.1e-06 Score=66.26 Aligned_cols=110 Identities=15% Similarity=0.046 Sum_probs=93.0
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 009556 99 LLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGI 178 (532)
Q Consensus 99 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 178 (532)
.|+++.... +.+...+..+...+...|++++|...|+...... +.+...|..+..+|.+.|++++|...|++......
T Consensus 9 ~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 9 TIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp SHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 455555442 3345677888899999999999999999998875 56788999999999999999999999999988654
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 009556 179 CRNQETYEILLDYHVNAGRLDDTWLIINEMRSK 211 (532)
Q Consensus 179 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 211 (532)
.+...|..+..+|...|++++|.+.|++..+.
T Consensus 87 -~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 87 -XEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp -TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46778899999999999999999999998775
No 150
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.38 E-value=8.1e-06 Score=72.57 Aligned_cols=187 Identities=10% Similarity=-0.010 Sum_probs=117.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChHhHHHH-------HHHHHhcCChhHHHHHHHHHHHcCCCcC---------------
Q 009556 124 SVGRTLEADAIFQEMVCFGFNPKLRFYNIL-------LRGFLKKGLLGLGSRLLMVMEDMGICRN--------------- 181 (532)
Q Consensus 124 ~~~~~~~A~~~~~~~~~~g~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~~~~~~--------------- 181 (532)
..++...|.+.|.++.+.. +-....|..+ ...+.+.++..++...+..-.+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 5799999999999999875 4556778777 4555555555555554444333 2221
Q ss_pred -------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC--CH
Q 009556 182 -------QETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSL--DR 252 (532)
Q Consensus 182 -------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~ 252 (532)
...+..+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...+.. .| ..
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1233445667777888888888887776643 333244455556777778888877776544321 11 02
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 009556 253 QIYNSIIDTFGKYGELVEALEVFEKMQQESIRPD--IVTWNSLIRWHCKAGDVAKALELFTQMQEQ 316 (532)
Q Consensus 253 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 316 (532)
..+..+..++...|++++|++.|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3556666777777777777777777764322133 234455666677777777777777777764
No 151
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.35 E-value=6.7e-06 Score=62.31 Aligned_cols=99 Identities=12% Similarity=-0.014 Sum_probs=72.1
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--ChHhHHHHH
Q 009556 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNP--KLRFYNILL 154 (532)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~--~~~~~~~li 154 (532)
...|..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|.+.+++..+.. +. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 3455667777778888888888888877664 4456677777778888888888888888877654 33 466777777
Q ss_pred HHHHhc-CChhHHHHHHHHHHHcC
Q 009556 155 RGFLKK-GLLGLGSRLLMVMEDMG 177 (532)
Q Consensus 155 ~~~~~~-g~~~~A~~~~~~m~~~~ 177 (532)
..+.+. |++++|.+.++......
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcc
Confidence 777777 77777777777776653
No 152
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.34 E-value=8.5e-06 Score=65.25 Aligned_cols=98 Identities=14% Similarity=0.023 Sum_probs=75.6
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHH
Q 009556 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (532)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (532)
...+..+...+.+.|++++|+..|++....+ +.+...|..+..++...|++++|+..|+...+.. +.+...+..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 3445566677788888888888888887764 4567778888888888888888888888888765 4566777778888
Q ss_pred HHhcCChhHHHHHHHHHHHc
Q 009556 157 FLKKGLLGLGSRLLMVMEDM 176 (532)
Q Consensus 157 ~~~~g~~~~A~~~~~~m~~~ 176 (532)
|...|++++|.+.|+...+.
T Consensus 96 ~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 88888888888888877654
No 153
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.32 E-value=1.1e-05 Score=63.05 Aligned_cols=97 Identities=12% Similarity=0.027 Sum_probs=68.0
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----hHhHH
Q 009556 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGF--NPK----LRFYN 151 (532)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~--~~~----~~~~~ 151 (532)
..+..+...+.+.|++++|++.|++..+.. +.+...|..+..++...|++++|++.+++..+... .++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 456777788888888888888888887764 45677788888888888888888888887765320 111 13455
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH
Q 009556 152 ILLRGFLKKGLLGLGSRLLMVMED 175 (532)
Q Consensus 152 ~li~~~~~~g~~~~A~~~~~~m~~ 175 (532)
.+..++...|++++|++.|++...
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566666666777777777666654
No 154
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.32 E-value=7.5e-06 Score=64.12 Aligned_cols=105 Identities=15% Similarity=0.073 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC----HHHHHH
Q 009556 394 MFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIG--ISPD----LVTYST 467 (532)
Q Consensus 394 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~----~~~~~~ 467 (532)
.+..+...+.+.|++++|++.|++..+.. +.+...|..+..+|...|++++|++.+++..+.. ..++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 35556666777777777777777766543 3456667777777777777777777777765431 1111 124556
Q ss_pred HHHHHHhcCCcChHHHHHHHHHhCCCCCCHHHHH
Q 009556 468 LMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQ 501 (532)
Q Consensus 468 l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 501 (532)
+..++...|++++|++.|++..+ ..||..+..
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~ 120 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVK 120 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHH
Confidence 66677777777777777777765 445654443
No 155
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.32 E-value=3.3e-05 Score=61.10 Aligned_cols=99 Identities=8% Similarity=-0.033 Sum_probs=68.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009556 390 PSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLM 469 (532)
Q Consensus 390 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 469 (532)
.+...+..+...+...|++++|...|+...... +.+...|..+..++...|++++|...+++..+.. +.+...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 345566667777777777777777777766553 3456677777777777777777777777776643 22566677777
Q ss_pred HHHHhcCCcChHHHHHHHHHh
Q 009556 470 KAFIRAKKFHKVPEIYKQMES 490 (532)
Q Consensus 470 ~~~~~~g~~~~a~~~~~~m~~ 490 (532)
.++...|++++|.+.+++..+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 777777777777777777764
No 156
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.32 E-value=1.6e-05 Score=61.95 Aligned_cols=95 Identities=13% Similarity=0.049 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009556 394 MFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFI 473 (532)
Q Consensus 394 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 473 (532)
.|..+...+.+.|++++|.+.|++..+.. +.+...|..+..++.+.|++++|...+++..+.. +.+...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 34555556666666666666666665543 3355666666666667777777777776666542 224556666666666
Q ss_pred hcCCcChHHHHHHHHHh
Q 009556 474 RAKKFHKVPEIYKQMES 490 (532)
Q Consensus 474 ~~g~~~~a~~~~~~m~~ 490 (532)
..|++++|.+.+++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 77777777777666665
No 157
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.31 E-value=1.5e-05 Score=74.47 Aligned_cols=130 Identities=6% Similarity=-0.087 Sum_probs=70.7
Q ss_pred hHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcC--------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 009556 147 LRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRN--------------QETYEILLDYHVNAGRLDDTWLIINEMRSKG 212 (532)
Q Consensus 147 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 212 (532)
...+..+...+.+.|++++|...|++..+...... ...|..+..+|.+.|++++|+..+++..+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44555555556666666666666666555432111 3555556666666666666666666655542
Q ss_pred CCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHH-HHHHHHH
Q 009556 213 FQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEA-LEVFEKM 278 (532)
Q Consensus 213 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~m 278 (532)
. .+...+..+..++...|++++|...|+++.+.. +.+...+..+...+.+.|+.++| ...|..|
T Consensus 227 p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 227 S-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 145555555566666666666666666655543 22445555555555555655555 2344443
No 158
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.31 E-value=1.1e-05 Score=68.89 Aligned_cols=129 Identities=10% Similarity=-0.036 Sum_probs=84.2
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH----------------hHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009556 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSS----------------ISYASLIEALASVGRTLEADAIFQEMVC 140 (532)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----------------~~~~~li~~~~~~~~~~~A~~~~~~~~~ 140 (532)
...|..+...+.+.|++++|+..|++..+.. +.+. ..|..+..++...|++++|+..++...+
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4456777788888999999999999988753 1222 5677777777777888888888777776
Q ss_pred CCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHH-HHHHHH
Q 009556 141 FGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTW-LIINEM 208 (532)
Q Consensus 141 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~-~~~~~m 208 (532)
.. +.+...+..+..+|...|++++|.+.|++..+... .+...+..+...+...++.+++. ..+..+
T Consensus 117 ~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 117 ID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHC---------
T ss_pred hC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 44566777777777777777777777777766432 34555666666665555554444 333333
No 159
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.30 E-value=1.7e-05 Score=65.24 Aligned_cols=101 Identities=8% Similarity=-0.034 Sum_probs=86.0
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHH
Q 009556 75 FSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILL 154 (532)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li 154 (532)
.+...|..+...+.+.|++++|++.|++..+.. +.+...|..+..++...|++++|+..|++..+.. +.+...|..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 356678888889999999999999999988875 4578888999999999999999999999998875 45678888899
Q ss_pred HHHHhcCChhHHHHHHHHHHHcC
Q 009556 155 RGFLKKGLLGLGSRLLMVMEDMG 177 (532)
Q Consensus 155 ~~~~~~g~~~~A~~~~~~m~~~~ 177 (532)
.+|.+.|++++|.+.|++..+..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC
Confidence 99999999999999999887753
No 160
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.29 E-value=8.5e-06 Score=63.78 Aligned_cols=108 Identities=9% Similarity=0.034 Sum_probs=75.5
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----hHhHH
Q 009556 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGF--NPK----LRFYN 151 (532)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~--~~~----~~~~~ 151 (532)
..|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|...++...+... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 456777778888888888888888887764 45677777888888888888888888888775431 111 55666
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHH
Q 009556 152 ILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEIL 188 (532)
Q Consensus 152 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 188 (532)
.+...+.+.|++++|.+.|+...+.. |+...+..+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l 118 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKC 118 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHH
Confidence 67777777777777777777776643 344444333
No 161
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.28 E-value=2.1e-05 Score=62.34 Aligned_cols=98 Identities=10% Similarity=-0.063 Sum_probs=71.9
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHH
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (532)
+...|..+...+...|++++|+..|++..... +.+...|..+..++...|++++|...++...+.. +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 45667777777788888888888888777664 4456777777777778888888888887777654 345667777777
Q ss_pred HHHhcCChhHHHHHHHHHHH
Q 009556 156 GFLKKGLLGLGSRLLMVMED 175 (532)
Q Consensus 156 ~~~~~g~~~~A~~~~~~m~~ 175 (532)
++...|++++|...|++..+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 77777777777777777665
No 162
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.28 E-value=4.4e-05 Score=58.23 Aligned_cols=98 Identities=13% Similarity=-0.011 Sum_probs=65.5
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 009556 112 SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDY 191 (532)
Q Consensus 112 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 191 (532)
...+..+...+...|++++|.+.++...+.. +.+...+..+...+...|++++|...+++..+... .+...+..+...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHH
Confidence 4456666677777777777777777776654 34566666677777777777777777777666432 345566666666
Q ss_pred HHhcCChHHHHHHHHHHHHC
Q 009556 192 HVNAGRLDDTWLIINEMRSK 211 (532)
Q Consensus 192 ~~~~~~~~~a~~~~~~m~~~ 211 (532)
+...|++++|.+.+++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 77777777777777666654
No 163
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.28 E-value=1.3e-05 Score=62.74 Aligned_cols=115 Identities=12% Similarity=0.148 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHHHH
Q 009556 393 SMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGI--SPD----LVTYS 466 (532)
Q Consensus 393 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~----~~~~~ 466 (532)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+... .++ ...+.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345566666777777777777777766543 34566677777777777777777777777765321 112 55667
Q ss_pred HHHHHHHhcCCcChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Q 009556 467 TLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSALVVL 510 (532)
Q Consensus 467 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~a~~~~ 510 (532)
.+..++...|++++|.+.+++..+ ..|+......+.......
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA--EHRTPDVLKKCQQAEKIL 125 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHH
Confidence 777777778888888888877776 345655555555544443
No 164
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.26 E-value=7.4e-06 Score=65.63 Aligned_cols=98 Identities=17% Similarity=0.054 Sum_probs=68.6
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 009556 112 SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDY 191 (532)
Q Consensus 112 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 191 (532)
...+..+...+.+.|++++|...|+...... +.+...|..+..++.+.|++++|...|++...... .+...|..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHH
Confidence 3445566667777788888888877777654 44666777777777777777777777777776543 455566677777
Q ss_pred HHhcCChHHHHHHHHHHHHC
Q 009556 192 HVNAGRLDDTWLIINEMRSK 211 (532)
Q Consensus 192 ~~~~~~~~~a~~~~~~m~~~ 211 (532)
+...|++++|.+.|++..+.
T Consensus 96 ~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 77777777777777776654
No 165
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.25 E-value=3.8e-05 Score=61.60 Aligned_cols=100 Identities=14% Similarity=0.014 Sum_probs=84.4
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhH
Q 009556 75 FSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPS----SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFY 150 (532)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~ 150 (532)
.+...|..+...+.+.|++++|++.|++..+. .|+ ...+..+...+...|++++|.+.++...+.. +.+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 45677888899999999999999999999876 355 6778888889999999999999999988764 4467788
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcC
Q 009556 151 NILLRGFLKKGLLGLGSRLLMVMEDMG 177 (532)
Q Consensus 151 ~~li~~~~~~g~~~~A~~~~~~m~~~~ 177 (532)
..+..++...|++++|.+.|++..+..
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 888888999999999999998887753
No 166
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.25 E-value=0.0015 Score=59.81 Aligned_cols=188 Identities=7% Similarity=-0.027 Sum_probs=121.5
Q ss_pred hcCCH-HHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCC----------hhHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 009556 124 SVGRT-LEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGL----------LGLGSRLLMVMEDMGICRNQETYEILLDYH 192 (532)
Q Consensus 124 ~~~~~-~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 192 (532)
+.|.+ ++|+++++.+...+ +.+..+|+.--..+...+. +++++.+++.+....+ .+..+|+.-...+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P-Kny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 44555 47899999998765 3455566654444443333 5678888888877544 5677888777777
Q ss_pred HhcCC--hHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc----
Q 009556 193 VNAGR--LDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGM-WKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKY---- 265 (532)
Q Consensus 193 ~~~~~--~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---- 265 (532)
.+.++ +++++++++.+.+.... |..+|+.-.-.+...|. ++++++.++.+.+.. +.|...|+.....+.+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC
T ss_pred hccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhcc
Confidence 77774 78888888888876543 66777766666777777 578888888888775 34777777666655544
Q ss_pred ----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHC
Q 009556 266 ----------GELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKA-----------GDVAKALELFTQMQEQ 316 (532)
Q Consensus 266 ----------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~ 316 (532)
+.++++++.++......+. |...|+-+-..+.+. +.++++++.++++.+.
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence 3466777777766654322 555565443333333 2345666666666553
No 167
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.24 E-value=1.3e-05 Score=60.65 Aligned_cols=99 Identities=7% Similarity=0.019 Sum_probs=58.2
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCc--CHHHHHHH
Q 009556 111 SSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICR--NQETYEIL 188 (532)
Q Consensus 111 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~l 188 (532)
+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.|++..+... . +...|..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE-DEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC-CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-ccchHHHHHHH
Confidence 34455556666666666666666666666543 33455566666666666666666666666655432 2 34555556
Q ss_pred HHHHHhc-CChHHHHHHHHHHHHC
Q 009556 189 LDYHVNA-GRLDDTWLIINEMRSK 211 (532)
Q Consensus 189 i~~~~~~-~~~~~a~~~~~~m~~~ 211 (532)
...+.+. |++++|.+.+++....
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 6666666 6666666666665544
No 168
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.24 E-value=3.5e-05 Score=63.34 Aligned_cols=95 Identities=14% Similarity=0.090 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009556 394 MFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFI 473 (532)
Q Consensus 394 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 473 (532)
.+..+...+...|++++|.+.|++..+.. +.+...|..+..+|...|++++|...|++..+.. +.+...|..+..++.
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34444444555555555555555544432 2244445555555555555555555555554432 113444555555555
Q ss_pred hcCCcChHHHHHHHHHh
Q 009556 474 RAKKFHKVPEIYKQMES 490 (532)
Q Consensus 474 ~~g~~~~a~~~~~~m~~ 490 (532)
..|++++|.+.|++..+
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 55555555555555543
No 169
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.24 E-value=2.1e-06 Score=73.45 Aligned_cols=120 Identities=11% Similarity=-0.084 Sum_probs=59.5
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----------------HhHH
Q 009556 88 CKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKL----------------RFYN 151 (532)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~----------------~~~~ 151 (532)
...|++++|.+.++.-.... ......+..+...+...|++++|.+.|++..+... .+. ..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFI-HTEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp -------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT-TCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh-cccccchhhHHHHHHHHHHHHHH
Confidence 34466666666555322210 12345667777888888999999999988886431 111 3444
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009556 152 ILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRS 210 (532)
Q Consensus 152 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 210 (532)
.+..+|.+.|++++|...++...+... .+...+..+..+|...|++++|.+.|++..+
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 444444455555555555544444321 2333444444444444444444444444443
No 170
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.23 E-value=1.2e-05 Score=62.28 Aligned_cols=96 Identities=10% Similarity=-0.087 Sum_probs=81.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHH
Q 009556 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFL 158 (532)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 158 (532)
.+-.+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..|++..+.. +.+...+..+..++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 35567778889999999999999998875 5578888899999999999999999999998875 456778888889999
Q ss_pred hcCChhHHHHHHHHHHHc
Q 009556 159 KKGLLGLGSRLLMVMEDM 176 (532)
Q Consensus 159 ~~g~~~~A~~~~~~m~~~ 176 (532)
+.|++++|...|++..+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999888764
No 171
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.20 E-value=8.7e-05 Score=71.93 Aligned_cols=196 Identities=10% Similarity=-0.055 Sum_probs=123.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCC----------------HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC
Q 009556 84 IQYCCKLGDIDEAMALLAQMQALGFHPS----------------SISYASLIEALASVGRTLEADAIFQEMVCFG-FNPK 146 (532)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~~~~~~----------------~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g-~~~~ 146 (532)
.+.+.+.|++++|++.|..+.+...... ..++..+...|...|++++|.+.+..+.+.- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4567889999999999999987642111 1246778889999999999999888776421 1112
Q ss_pred h----HhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--C--
Q 009556 147 L----RFYNILLRGFLKKGLLGLGSRLLMVMEDM----GICR-NQETYEILLDYHVNAGRLDDTWLIINEMRSKG--F-- 213 (532)
Q Consensus 147 ~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~-- 213 (532)
. .+.+.+...+...|+.+.|.++++..... +..+ -..++..+...|...|++++|..++++....- .
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 12333334444567888888887776532 2222 24466777888888888888888887765421 1
Q ss_pred Cc-CHHhHHHHHHHHHcCCChHHHHHHHHHHHHcC--CCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 009556 214 QL-NSFVYGKVIGLYRDNGMWKKAVGIVEEIREMG--LSLD----RQIYNSIIDTFGKYGELVEALEVFEKMQ 279 (532)
Q Consensus 214 ~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~ 279 (532)
.+ ...++..++..|...|++++|..+++...... ...+ ...+..+...+...+++++|...|.+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 11 23456667777777777777777777665321 1111 2344555556666677777766665543
No 172
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.10 E-value=0.00014 Score=56.59 Aligned_cols=94 Identities=16% Similarity=-0.011 Sum_probs=69.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH---hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hHhHHHHH
Q 009556 81 NKSIQYCCKLGDIDEAMALLAQMQALGFHPSS---ISYASLIEALASVGRTLEADAIFQEMVCFGFNPK---LRFYNILL 154 (532)
Q Consensus 81 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~---~~~~~~li 154 (532)
-.+...+.+.|++++|+..|+++.+.. +.+. ..+..+..++...|++++|...|+.+.+.. +.+ ...+..+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHH
Confidence 345666778888888888888887763 2233 467777788888888888888888887754 223 55677777
Q ss_pred HHHHhcCChhHHHHHHHHHHHc
Q 009556 155 RGFLKKGLLGLGSRLLMVMEDM 176 (532)
Q Consensus 155 ~~~~~~g~~~~A~~~~~~m~~~ 176 (532)
.++.+.|++++|...|+.+.+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 7888888888888888887764
No 173
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.07 E-value=0.00014 Score=58.18 Aligned_cols=100 Identities=13% Similarity=-0.061 Sum_probs=77.6
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----hHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHH
Q 009556 109 HPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPK----LRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQET 184 (532)
Q Consensus 109 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 184 (532)
+.+...+..+...+...|++++|.+.|++..+.. |+ ...+..+...|...|++++|...+++..+... .+...
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~ 101 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-GDVKA 101 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-CCHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-cCHHH
Confidence 3456778888888889999999999999988754 44 56777788888888888888888888776532 35667
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC
Q 009556 185 YEILLDYHVNAGRLDDTWLIINEMRSK 211 (532)
Q Consensus 185 ~~~li~~~~~~~~~~~a~~~~~~m~~~ 211 (532)
|..+...+...|++++|...|++..+.
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 777777888888888888888877765
No 174
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.07 E-value=3e-05 Score=63.20 Aligned_cols=132 Identities=11% Similarity=0.040 Sum_probs=77.2
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCC-C
Q 009556 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFH-PS----SISYASLIEALASVGRTLEADAIFQEMVCFG----FNP-K 146 (532)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g----~~~-~ 146 (532)
..++..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|.+.+++..+.. ..+ .
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 345677788888889999998888887654100 11 1356777777788888888888887765421 001 1
Q ss_pred hHhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCC-cCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 009556 147 LRFYNILLRGFLKKGLLGLGSRLLMVMEDM----GIC-RNQETYEILLDYHVNAGRLDDTWLIINEM 208 (532)
Q Consensus 147 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m 208 (532)
...+..+...+...|++++|.+.+++..+. +.. .....+..+...+...|++++|.+.+++.
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 334555666666667777776666665432 100 01223444444555555555555555444
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.06 E-value=4.5e-05 Score=59.00 Aligned_cols=95 Identities=11% Similarity=-0.039 Sum_probs=67.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 009556 115 YASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVN 194 (532)
Q Consensus 115 ~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 194 (532)
+..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|+..|++..+... .+...+..+...+..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 4455666777788888888888777654 44667777777777777888888877777776543 355677777777777
Q ss_pred cCChHHHHHHHHHHHHC
Q 009556 195 AGRLDDTWLIINEMRSK 211 (532)
Q Consensus 195 ~~~~~~a~~~~~~m~~~ 211 (532)
.|++++|...+++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777776654
No 176
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.06 E-value=0.00026 Score=68.53 Aligned_cols=165 Identities=11% Similarity=-0.008 Sum_probs=89.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCC-CCcCH----HhHHHHHHHHHcCCChHHHHHHHHHHHHc----CCCC-CHHH
Q 009556 185 YEILLDYHVNAGRLDDTWLIINEMRSKG-FQLNS----FVYGKVIGLYRDNGMWKKAVGIVEEIREM----GLSL-DRQI 254 (532)
Q Consensus 185 ~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~ 254 (532)
+..+...|.+.|++++|.+.+..+...- ..++. .+.+.+-..+...|+++++..+++..... +..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 3445555555666666665555543210 00111 11122222333456666666666655432 2121 2445
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC----HH
Q 009556 255 YNSIIDTFGKYGELVEALEVFEKMQQE----SIRP-DIVTWNSLIRWHCKAGDVAKALELFTQMQEQ--GFYPD----PK 323 (532)
Q Consensus 255 ~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~----~~ 323 (532)
+..+...|...|++++|..+++++... +-.+ ....+..++..|...|++++|..++++.... .+..+ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 666777777777777777777766532 1111 2345677777788888888888887776532 11111 23
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHH
Q 009556 324 IFITIISCLGELGKWDVIKKNFENMK 349 (532)
Q Consensus 324 ~~~~ll~~~~~~~~~~~a~~~~~~~~ 349 (532)
.+..+...+...++++.|...+.+..
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34455556667777877777666654
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.05 E-value=8.6e-05 Score=57.91 Aligned_cols=99 Identities=10% Similarity=0.009 Sum_probs=60.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhccCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHH
Q 009556 397 ILANAYAQQGLCEQTVKVLQLMEPEGIEPNL---VMLNVLINAFGVAGKYKEALSVYHLMKDIGISPD---LVTYSTLMK 470 (532)
Q Consensus 397 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~ 470 (532)
.+...+...|++++|.+.|+...+.. +.+. ..+..+..++...|++++|...|+++.+.... + ...+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHH
Confidence 34455666677777777776665542 1122 35556666777777777777777776654211 2 445666666
Q ss_pred HHHhcCCcChHHHHHHHHHhCCCCCCHHH
Q 009556 471 AFIRAKKFHKVPEIYKQMESSGCTPDRKA 499 (532)
Q Consensus 471 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 499 (532)
++...|++++|.+.++++.+. .|+...
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~--~p~~~~ 111 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ--YPGSDA 111 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTSHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH--CCCChH
Confidence 777777777777777777653 354443
No 178
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.05 E-value=1.4e-05 Score=78.51 Aligned_cols=119 Identities=11% Similarity=-0.001 Sum_probs=92.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChh
Q 009556 85 QYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLG 164 (532)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 164 (532)
..+.+.|++++|++.|++..+.. +.+..+|..+..++.+.|++++|++.+++..+.. +.+...+..+..+|.+.|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 34567899999999999988874 4568889999999999999999999999999875 456788889999999999999
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHH--HHhcCChHHHHHHHH
Q 009556 165 LGSRLLMVMEDMGICRNQETYEILLDY--HVNAGRLDDTWLIIN 206 (532)
Q Consensus 165 ~A~~~~~~m~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~ 206 (532)
+|.+.|++..+... .+...+..+..+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999887643 233455555555 777888888888887
No 179
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.01 E-value=6.7e-05 Score=70.84 Aligned_cols=121 Identities=7% Similarity=-0.070 Sum_probs=68.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHc---------------CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 009556 79 SYNKSIQYCCKLGDIDEAMALLAQMQAL---------------GFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGF 143 (532)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~---------------~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~ 143 (532)
.|..+...+.+.|++++|++.|++..+. --+.+..+|..+..++.+.|++++|++.+++..+..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 3666777778888888888888877651 001233455555566666666666666666665543
Q ss_pred CCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHH
Q 009556 144 NPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDT 201 (532)
Q Consensus 144 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 201 (532)
+.+...+..+..+|...|++++|.+.|++..+... .+...+..+...+.+.++.+++
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 23445555555666666666666666665555422 2344444444444444444333
No 180
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.01 E-value=6.7e-05 Score=61.47 Aligned_cols=110 Identities=13% Similarity=0.003 Sum_probs=72.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhccC--------C---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009556 395 FCILANAYAQQGLCEQTVKVLQLMEPE--------G---------IEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIG 457 (532)
Q Consensus 395 ~~~li~~~~~~g~~~~A~~~~~~m~~~--------~---------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 457 (532)
+......+.+.|++++|...|.+.... . -+.+...|..+..+|.+.|++++|...+++..+..
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 334444555555555555555544432 0 01234567788888888899999999888888753
Q ss_pred CCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCHH-HHHHHHHHH
Q 009556 458 ISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRK-ARQILQSAL 507 (532)
Q Consensus 458 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~l~~a~ 507 (532)
+.+...|..+..++...|++++|.+.|++..+ +.|+.. .....+..+
T Consensus 94 -p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 94 -ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR--NHPAAASVVAREMKIV 141 (162)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGGHHHHHHHHHHH
T ss_pred -CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCCCHHHHHHHHHHH
Confidence 33577888888888899999999999888887 566654 444333333
No 181
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.99 E-value=0.0001 Score=60.33 Aligned_cols=99 Identities=11% Similarity=-0.004 Sum_probs=72.3
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHc-------CC----------CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009556 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQAL-------GF----------HPSSISYASLIEALASVGRTLEADAIFQEMV 139 (532)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~----------~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 139 (532)
...+......+.+.|++++|+..|++.... +. +.+...|..+..++.+.|++++|+..++..+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456778888999999999999999998764 00 1223566777777777777777777777777
Q ss_pred HCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 009556 140 CFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDM 176 (532)
Q Consensus 140 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 176 (532)
+.. +.+...|..+..+|...|++++|...|++..+.
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 654 445667777777777777777777777777664
No 182
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.99 E-value=8.8e-05 Score=72.38 Aligned_cols=88 Identities=7% Similarity=-0.126 Sum_probs=42.6
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHH
Q 009556 148 RFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLY 227 (532)
Q Consensus 148 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 227 (532)
..|..+..+|.+.|++++|+..+++..+... .+...|..+..+|...|++++|...|++..+.... +...+..+..++
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~ 395 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQ 395 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 4445555555555555555555555554332 24445555555555555555555555555543211 334444444555
Q ss_pred HcCCChHHHH
Q 009556 228 RDNGMWKKAV 237 (532)
Q Consensus 228 ~~~~~~~~a~ 237 (532)
.+.++.+++.
T Consensus 396 ~~~~~~~~a~ 405 (457)
T 1kt0_A 396 KKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.96 E-value=2.1e-05 Score=60.47 Aligned_cols=87 Identities=17% Similarity=0.110 Sum_probs=62.0
Q ss_pred HcCChHHHHHHHHHHHHcC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHH
Q 009556 89 KLGDIDEAMALLAQMQALG--FHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLG 166 (532)
Q Consensus 89 ~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 166 (532)
..|++++|+..|++..+.+ -+.+...+..+..++...|++++|++.|++..+.. +.+...+..+..++.+.|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 3577888888888887753 13345667778888888888888888888887765 44567777788888888888888
Q ss_pred HHHHHHHHHc
Q 009556 167 SRLLMVMEDM 176 (532)
Q Consensus 167 ~~~~~~m~~~ 176 (532)
...|++....
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888877664
No 184
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.94 E-value=6.6e-05 Score=61.03 Aligned_cols=25 Identities=12% Similarity=0.130 Sum_probs=11.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 009556 115 YASLIEALASVGRTLEADAIFQEMV 139 (532)
Q Consensus 115 ~~~li~~~~~~~~~~~A~~~~~~~~ 139 (532)
+..+...+...|++++|.+.+++..
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al 36 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRL 36 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4444444444455555554444443
No 185
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.88 E-value=4.5e-05 Score=74.85 Aligned_cols=117 Identities=9% Similarity=0.019 Sum_probs=60.6
Q ss_pred HHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009556 367 YGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEA 446 (532)
Q Consensus 367 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 446 (532)
+.+.|++++|.+.+++..+.. +.+...|..+..+|.+.|++++|.+.+++..+.. +.+...|..+..+|...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 344555556666555555542 2235555666666666666666666666655542 33455566666666666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCcChHHHHHH
Q 009556 447 LSVYHLMKDIGISPDLVTYSTLMKA--FIRAKKFHKVPEIYK 486 (532)
Q Consensus 447 ~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~ 486 (532)
.+.|++..+... .+...+..+..+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666666654321 122233333333 555566666666655
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.87 E-value=5.3e-05 Score=58.12 Aligned_cols=86 Identities=9% Similarity=0.025 Sum_probs=52.0
Q ss_pred cCCcccHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009556 370 YGRFRDPEECIAALKLEG--LQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEAL 447 (532)
Q Consensus 370 ~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 447 (532)
.|++++|+..|++..+.+ -+.+...+..+...|...|++++|.+.+++..+.. +-+...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 466667777777666543 12234456666666777777777777777766553 334566666677777777777777
Q ss_pred HHHHHHHHC
Q 009556 448 SVYHLMKDI 456 (532)
Q Consensus 448 ~~~~~m~~~ 456 (532)
..+++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777766553
No 187
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.87 E-value=0.00023 Score=57.03 Aligned_cols=95 Identities=16% Similarity=0.028 Sum_probs=60.0
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--------H-----hHHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 009556 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPS--------S-----ISYASLIEALASVGRTLEADAIFQEMVCF--- 141 (532)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--------~-----~~~~~li~~~~~~~~~~~A~~~~~~~~~~--- 141 (532)
..+......+.+.|++++|++.|++..+.. |+ . ..|..+..++.+.|++++|+..+++.++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~--p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEIS--HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 345666777888899999999999887763 32 2 26667777777777777777777766654
Q ss_pred ----CCCCChHhH----HHHHHHHHhcCChhHHHHHHHHHHH
Q 009556 142 ----GFNPKLRFY----NILLRGFLKKGLLGLGSRLLMVMED 175 (532)
Q Consensus 142 ----g~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~ 175 (532)
. +.+...| .....++...|++++|+..|++..+
T Consensus 90 ~~e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 90 RGELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HCCTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 2 2233344 4555555555555555555555443
No 188
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.86 E-value=0.0011 Score=66.18 Aligned_cols=174 Identities=9% Similarity=0.022 Sum_probs=127.4
Q ss_pred HcCC-hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCChHhHHHHHHHH
Q 009556 89 KLGD-IDEAMALLAQMQALGFHPSSISYASLIEALASVGR----------TLEADAIFQEMVCFGFNPKLRFYNILLRGF 157 (532)
Q Consensus 89 ~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~----------~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 157 (532)
+.|+ .++|++.++++...+ +-+..+|+.--.++...|+ ++++++.++.+.+.. +-+..+|+.-...+
T Consensus 40 ~~~~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l 117 (567)
T 1dce_A 40 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 117 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3444 467899999998875 4556778877777777776 889999999998765 56778888888888
Q ss_pred HhcC--ChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcC----
Q 009556 158 LKKG--LLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAG-RLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDN---- 230 (532)
Q Consensus 158 ~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~---- 230 (532)
.+.| +++++++.++++.+... .|..+|+.-..++.+.| .++++++.++++.+..+. |..+|+.....+.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCC
T ss_pred HHcccccHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccc
Confidence 8888 66999999999988765 67888888888888888 788888888888776544 667777666655542
Q ss_pred ----------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 009556 231 ----------GMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGE 267 (532)
Q Consensus 231 ----------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 267 (532)
+.++++.+.++.+.... +-+...|+-+-..+.+.++
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred cccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 34566666666666554 3355666666666655554
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.80 E-value=5.3e-05 Score=70.65 Aligned_cols=147 Identities=9% Similarity=-0.008 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHH
Q 009556 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFL 158 (532)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 158 (532)
.|..+...+.+.|++++|+..|++.... .|+... +...++.+++...+ . ...|..+..+|.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~-------~~~~~nla~~~~ 241 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K-------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H-------THHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H-------HHHHHHHHHHHH
Confidence 4555666666777788888777776654 233221 11122222222111 0 125666777777
Q ss_pred hcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHH-HHcCCChHHHH
Q 009556 159 KKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGL-YRDNGMWKKAV 237 (532)
Q Consensus 159 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~~~~~~~~~a~ 237 (532)
+.|++++|+..+++..+... .+...|..+..+|...|++++|...|++..+.... +...+..+... ....+..+.+.
T Consensus 242 ~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777776532 45667777777777777888887777776554211 33344444433 23345566677
Q ss_pred HHHHHHHHc
Q 009556 238 GIVEEIREM 246 (532)
Q Consensus 238 ~~~~~~~~~ 246 (532)
..|..+...
T Consensus 320 ~~~~~~l~~ 328 (338)
T 2if4_A 320 EMYKGIFKG 328 (338)
T ss_dssp ---------
T ss_pred HHHHHhhCC
Confidence 777776654
No 190
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.79 E-value=0.00031 Score=68.54 Aligned_cols=146 Identities=10% Similarity=-0.068 Sum_probs=92.6
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 009556 112 SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDY 191 (532)
Q Consensus 112 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 191 (532)
...|..+...+.+.|++++|...|++..+.. |+...+ . -+... .... .....|..+..+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~----------~-~~~~~----~~~~----~~~~~~~nla~~ 326 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGL----------S-EKESK----ASES----FLLAAFLNLAMC 326 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSC----------C-HHHHH----HHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccC----------C-hHHHH----HHHH----HHHHHHHHHHHH
Confidence 3455666666666777777777776666432 111000 0 00000 1110 124577888888
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHH
Q 009556 192 HVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEA 271 (532)
Q Consensus 192 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 271 (532)
|.+.|++++|+..+++..+.... +...|..+..+|...|++++|...|+++.+.. +.+...+..+...+.+.++.+++
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999988888876432 67778888888888999999999998888764 23556777788888888887776
Q ss_pred HH-HHHHHHh
Q 009556 272 LE-VFEKMQQ 280 (532)
Q Consensus 272 ~~-~~~~m~~ 280 (532)
.+ .+..|..
T Consensus 405 ~~~~~~~~f~ 414 (457)
T 1kt0_A 405 DRRIYANMFK 414 (457)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHh
Confidence 63 4555543
No 191
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.77 E-value=0.00027 Score=66.66 Aligned_cols=138 Identities=7% Similarity=-0.045 Sum_probs=80.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 009556 114 SYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHV 193 (532)
Q Consensus 114 ~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 193 (532)
.+..+...+.+.|++++|++.|++..+.- +.. ......+.+.+ .. +.+...|..+..+|.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~~~~~----~~----~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDADGAK----LQ----PVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHHHHGG----GH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChHHHHH----HH----HHHHHHHHHHHHHHH
Confidence 46677888889999999999998887520 000 00000000000 00 023445666666666
Q ss_pred hcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 009556 194 NAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALE 273 (532)
Q Consensus 194 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 273 (532)
+.|++++|++.+++..+... .+...+..+..++...|++++|.+.|+++.+.. +.+...+..+...+.+.++.+++.+
T Consensus 285 ~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777766666665432 245566666666777777777777777666653 2255566666666666666655543
No 192
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.72 E-value=6.2e-05 Score=56.86 Aligned_cols=93 Identities=14% Similarity=0.046 Sum_probs=68.0
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-------hH
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPK-------LR 148 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~-------~~ 148 (532)
+...|..+...+.+.|++++|++.|++..+.. +.+...+..+..++...|++++|++.+++..+.. |+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHH
Confidence 44567778888888899999999998888764 4567788888888888899999999888888754 33 44
Q ss_pred hHHHHHHHHHhcCChhHHHHHHH
Q 009556 149 FYNILLRGFLKKGLLGLGSRLLM 171 (532)
Q Consensus 149 ~~~~li~~~~~~g~~~~A~~~~~ 171 (532)
.+..+..++...|+.+.|...++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHH
Confidence 55555666666666655554443
No 193
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.69 E-value=0.0037 Score=62.47 Aligned_cols=172 Identities=8% Similarity=0.032 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC--
Q 009556 199 DDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGM----------WKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYG-- 266 (532)
Q Consensus 199 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-- 266 (532)
++|++.++++...... +..+|+.--.++...|+ ++++++.++.+.+.. +-+..+|+.-...+.+.+
T Consensus 46 eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 46 ESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 4555555555544222 23334333333333333 566666666666654 235566666666666666
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc----------
Q 009556 267 ELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAG-DVAKALELFTQMQEQGFYPDPKIFITIISCLGEL---------- 335 (532)
Q Consensus 267 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~---------- 335 (532)
+++++++.++++.+.... +...|+.-...+.+.| .++++++.++++.+.. +-|...|......+.+.
T Consensus 124 ~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccccc
Confidence 556677777666665433 5666666666666666 6666666666666543 22445554444444332
Q ss_pred ----CCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCccc
Q 009556 336 ----GKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRD 375 (532)
Q Consensus 336 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 375 (532)
+.++++.+.+..+.... +.+...|..+-..+.+.++.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 44677888888777765 5567788887777777776444
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.67 E-value=0.00014 Score=67.84 Aligned_cols=147 Identities=15% Similarity=0.096 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 009556 322 PKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANA 401 (532)
Q Consensus 322 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 401 (532)
...+..+...+.+.|++++|...|.+..+.. |+... +...++.+++...+ . ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l---~-------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAV---K-------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHH---H-------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHH---H-------HHHHHHHHHH
Confidence 4556666677778888888888888877653 22111 11222222222211 1 1257778888
Q ss_pred HHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH-HHhcCCcC
Q 009556 402 YAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPD-LVTYSTLMKA-FIRAKKFH 479 (532)
Q Consensus 402 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~-~~~~g~~~ 479 (532)
|.+.|++++|...+++..+.. +.+...|..+..+|...|++++|...|++..+. .|+ ...+..+... ....+..+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 888889999988888887653 446778888888889999999999988888764 333 3344444444 23455667
Q ss_pred hHHHHHHHHHh
Q 009556 480 KVPEIYKQMES 490 (532)
Q Consensus 480 ~a~~~~~~m~~ 490 (532)
++.++|+.|..
T Consensus 317 ~a~~~~~~~l~ 327 (338)
T 2if4_A 317 KQKEMYKGIFK 327 (338)
T ss_dssp -----------
T ss_pred HHHHHHHHhhC
Confidence 77888888765
No 195
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.66 E-value=0.00025 Score=69.12 Aligned_cols=87 Identities=15% Similarity=-0.039 Sum_probs=46.8
Q ss_pred HHcCChHHHHHHHHHHHHcC---C---CC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCC-hHhHHHH
Q 009556 88 CKLGDIDEAMALLAQMQALG---F---HP-SSISYASLIEALASVGRTLEADAIFQEMVCF-----G-FNPK-LRFYNIL 153 (532)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~~---~---~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-----g-~~~~-~~~~~~l 153 (532)
..+|++++|+.++++..+.. + .| ...+++.|..+|...|++++|..++++.++. | -.|+ ..+++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 35566777766666654421 1 11 1335666666666666666666666665431 2 0121 2345555
Q ss_pred HHHHHhcCChhHHHHHHHHHH
Q 009556 154 LRGFLKKGLLGLGSRLLMVME 174 (532)
Q Consensus 154 i~~~~~~g~~~~A~~~~~~m~ 174 (532)
...|...|++++|..++++..
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 666666666666665555543
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.64 E-value=0.0023 Score=50.45 Aligned_cols=109 Identities=11% Similarity=0.004 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCCHHHHHH
Q 009556 198 LDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGK----YGELVEALE 273 (532)
Q Consensus 198 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~ 273 (532)
+++|++.|++..+.| .|+.. +...|...+..++|.++|++..+.| +...+..|...|.. .++.++|.+
T Consensus 11 ~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 11 LKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 444555555544443 11111 3333444444444555555554443 44444444444444 445555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCC
Q 009556 274 VFEKMQQESIRPDIVTWNSLIRWHCK----AGDVAKALELFTQMQEQG 317 (532)
Q Consensus 274 ~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 317 (532)
.|++..+.| +...+..|...|.. .+++++|.++|++..+.|
T Consensus 83 ~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 83 YYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 555554442 34444445555544 455555555555555443
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.62 E-value=0.00069 Score=48.68 Aligned_cols=81 Identities=19% Similarity=0.114 Sum_probs=53.5
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHH
Q 009556 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (532)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (532)
...|..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 4456666777777778888887777776654 3456667777777777777777777777776653 3345555555554
Q ss_pred HHh
Q 009556 157 FLK 159 (532)
Q Consensus 157 ~~~ 159 (532)
+.+
T Consensus 87 ~~~ 89 (91)
T 1na3_A 87 KQK 89 (91)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 198
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.62 E-value=0.0011 Score=53.15 Aligned_cols=97 Identities=9% Similarity=-0.105 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-----Ch-----HhHHHHHHHHHhcCChhHHHHHHHHHHHc-----
Q 009556 113 ISYASLIEALASVGRTLEADAIFQEMVCFGFN-P-----KL-----RFYNILLRGFLKKGLLGLGSRLLMVMEDM----- 176 (532)
Q Consensus 113 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~-~-----~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----- 176 (532)
..+......+.+.|++++|++.|++.++.... | +. ..|..+..++.+.|++++|+..+++..+.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 34566677788889999999999988865311 0 11 25666666666666666666666665553
Q ss_pred CCCc-CHHHH----HHHHHHHHhcCChHHHHHHHHHHH
Q 009556 177 GICR-NQETY----EILLDYHVNAGRLDDTWLIINEMR 209 (532)
Q Consensus 177 ~~~~-~~~~~----~~li~~~~~~~~~~~a~~~~~~m~ 209 (532)
.+.| +...| .....++...|++++|+..|++..
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 0012 23344 445555555555555555555543
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.57 E-value=0.00036 Score=53.11 Aligned_cols=79 Identities=13% Similarity=-0.036 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 009556 95 EAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVME 174 (532)
Q Consensus 95 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 174 (532)
+|++.|++..+.. +.+...+..+...+...|++++|...|++..+.. +.+...|..+..+|...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4667777776654 4567777888888888888888888888887764 4456677778888888888888888887776
Q ss_pred H
Q 009556 175 D 175 (532)
Q Consensus 175 ~ 175 (532)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 5
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.57 E-value=9.4e-05 Score=55.84 Aligned_cols=90 Identities=14% Similarity=-0.010 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-------HHHH
Q 009556 393 SMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPD-------LVTY 465 (532)
Q Consensus 393 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-------~~~~ 465 (532)
..+..+...+...|++++|.+.+++..+.. +.+...|..+..++...|++++|.+.+++..+. .|+ ...+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHHHH
Confidence 345555666666666666666666665542 335566666666666777777777776666653 232 3344
Q ss_pred HHHHHHHHhcCCcChHHHHH
Q 009556 466 STLMKAFIRAKKFHKVPEIY 485 (532)
Q Consensus 466 ~~l~~~~~~~g~~~~a~~~~ 485 (532)
..+..++...|+++.|.+.+
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHH
Confidence 55555555555555554433
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.56 E-value=0.0023 Score=50.48 Aligned_cols=77 Identities=10% Similarity=-0.067 Sum_probs=33.5
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHh----cCChhHH
Q 009556 91 GDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLK----KGLLGLG 166 (532)
Q Consensus 91 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A 166 (532)
+++++|++.|++..+.| .++. . +...|...+..++|.++|++..+.| +...+..|...|.. .++.++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFG--C--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 34455555555555444 1211 1 3344444444444555555544432 33334444444444 3444444
Q ss_pred HHHHHHHHH
Q 009556 167 SRLLMVMED 175 (532)
Q Consensus 167 ~~~~~~m~~ 175 (532)
.+.|++..+
T Consensus 81 ~~~~~~Aa~ 89 (138)
T 1klx_A 81 AQYYSKACG 89 (138)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 444444443
No 202
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.49 E-value=0.00034 Score=68.22 Aligned_cols=123 Identities=9% Similarity=0.060 Sum_probs=55.8
Q ss_pred HccCCHHHHHHHHHHHHhc-------CCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHc-----CC-CC-CHHHHHHH
Q 009556 333 GELGKWDVIKKNFENMKDR-------GHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLE-----GL-QP-SGSMFCIL 398 (532)
Q Consensus 333 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~l 398 (532)
...|++++|..++++.++. ..+....+++.|..+|...|++++|+.++++..+. |. .| ...+++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3455666666555554432 11112334555555555555555555555544321 10 11 12334555
Q ss_pred HHHHHhcCCHHHHHHHHHHhcc-----CCC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009556 399 ANAYAQQGLCEQTVKVLQLMEP-----EGI-EPNL-VMLNVLINAFGVAGKYKEALSVYHLMKD 455 (532)
Q Consensus 399 i~~~~~~g~~~~A~~~~~~m~~-----~~~-~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~ 455 (532)
...|...|++++|..++++..+ .|. .|+. .+.+.+-.++...+.+++|..++.++++
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555554332 110 1111 2233444455555555555555555543
No 203
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.46 E-value=0.00042 Score=55.37 Aligned_cols=99 Identities=10% Similarity=0.000 Sum_probs=75.3
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCH----------HHHHHHHHHHHHCCCCCChHhHHHHHHHH
Q 009556 88 CKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRT----------LEADAIFQEMVCFGFNPKLRFYNILLRGF 157 (532)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~----------~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 157 (532)
.+.+.+++|++.+++..+.. +.+...|..+..++...+++ ++|+..|++.++.. +.+...|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 46678999999999998886 66888999888888888765 48888888888875 44677888888888
Q ss_pred HhcC-----------ChhHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 009556 158 LKKG-----------LLGLGSRLLMVMEDMGICRNQETYEILLD 190 (532)
Q Consensus 158 ~~~g-----------~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 190 (532)
...| ++++|.+.|++..+. .|+...|...+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 8764 778888888877764 355444443333
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.40 E-value=0.0017 Score=49.28 Aligned_cols=77 Identities=14% Similarity=0.067 Sum_probs=34.6
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009556 376 PEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMK 454 (532)
Q Consensus 376 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 454 (532)
|...|++..+.. +.+...+..+...|...|++++|.+.+++..+.. +.+...|..+..+|...|++++|...|++..
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444332 2233444444444555555555555554444332 2233444444445555555555555544443
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.38 E-value=0.0019 Score=46.19 Aligned_cols=80 Identities=15% Similarity=0.077 Sum_probs=49.2
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 009556 112 SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDY 191 (532)
Q Consensus 112 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 191 (532)
...+..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|.+.|++..+... .+...+..+...
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 4456666667777777777777777776554 34556666666677777777777777776665432 234444444444
Q ss_pred HH
Q 009556 192 HV 193 (532)
Q Consensus 192 ~~ 193 (532)
+.
T Consensus 87 ~~ 88 (91)
T 1na3_A 87 KQ 88 (91)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.24 E-value=0.00056 Score=54.64 Aligned_cols=70 Identities=4% Similarity=-0.090 Sum_probs=32.5
Q ss_pred hcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Q 009556 369 QYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLC----------EQTVKVLQLMEPEGIEPNLVMLNVLINAFG 438 (532)
Q Consensus 369 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----------~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 438 (532)
+.+++++|.+.++...+.+ +.+...|..+..++...+++ ++|+..|++..+.. +-+...|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHH
Confidence 3444555555555555543 23444555555555554432 34444444444432 223344444444444
Q ss_pred hc
Q 009556 439 VA 440 (532)
Q Consensus 439 ~~ 440 (532)
..
T Consensus 92 ~l 93 (158)
T 1zu2_A 92 SF 93 (158)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.15 E-value=0.0025 Score=46.89 Aligned_cols=64 Identities=16% Similarity=0.069 Sum_probs=41.3
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVC 140 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 140 (532)
+...|..+...|.+.|++++|+..|++..+.. +.+...|..+..++...|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34456666666667777777777777766654 33455666666677777777777776666553
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.05 E-value=0.0037 Score=45.96 Aligned_cols=65 Identities=12% Similarity=0.004 Sum_probs=42.0
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 009556 110 PSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMED 175 (532)
Q Consensus 110 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 175 (532)
.+...+..+...+...|++++|+..|++..+.. +.+...|..+..+|.+.|++++|.+.|++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345566666667777777777777777766654 33455666666666667777777666666554
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.86 E-value=0.019 Score=52.79 Aligned_cols=75 Identities=13% Similarity=0.096 Sum_probs=50.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCHHHHHH
Q 009556 424 EPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQI 502 (532)
Q Consensus 424 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 502 (532)
+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++... +.|...|+..
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~~ 348 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLYW 348 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHHH
Confidence 4466666666666666677777777777777654 5666666666677777777777777777766 5566665543
No 210
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.77 E-value=0.095 Score=55.03 Aligned_cols=76 Identities=17% Similarity=0.232 Sum_probs=45.5
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 009556 221 GKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKA 300 (532)
Q Consensus 221 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 300 (532)
..++..+.+.|.+++|.++.+.-. .-.......|++++|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 555566666666666665442111 1122344567777777765443 2566777777777777
Q ss_pred CCHHHHHHHHHHHH
Q 009556 301 GDVAKALELFTQMQ 314 (532)
Q Consensus 301 g~~~~A~~~~~~m~ 314 (532)
++++.|.+.|.++.
T Consensus 695 ~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 695 FNFKLAIEAFTNAH 708 (814)
T ss_dssp TCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHcc
Confidence 77777777777653
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.77 E-value=0.053 Score=49.86 Aligned_cols=143 Identities=12% Similarity=0.006 Sum_probs=94.1
Q ss_pred CCCHhHHHHHHHHHH--hcC---CHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHh---cC-Ch-hH---HHHHHHHHHH
Q 009556 109 HPSSISYASLIEALA--SVG---RTLEADAIFQEMVCFGFNPKLRFYNILLRGFLK---KG-LL-GL---GSRLLMVMED 175 (532)
Q Consensus 109 ~~~~~~~~~li~~~~--~~~---~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~---~g-~~-~~---A~~~~~~m~~ 175 (532)
+.+...|...+++.. ..+ +..+|..+|++..+.. +.....|..+.-+|.. .+ .. .. ....++....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 567778887776654 223 3577899999998764 2334455544444421 11 11 11 1112222111
Q ss_pred c-CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHH
Q 009556 176 M-GICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQI 254 (532)
Q Consensus 176 ~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 254 (532)
. ..+.+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.+++.... .|...+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t 345 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANT 345 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcCh
Confidence 1 124567788888777777899999999999998875 67777878888889999999999999998886 456656
Q ss_pred HH
Q 009556 255 YN 256 (532)
Q Consensus 255 ~~ 256 (532)
|.
T Consensus 346 ~~ 347 (372)
T 3ly7_A 346 LY 347 (372)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 212
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.60 E-value=0.096 Score=55.00 Aligned_cols=155 Identities=17% Similarity=0.129 Sum_probs=99.4
Q ss_pred HHHHHcCChHHHHH-HHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCCh
Q 009556 85 QYCCKLGDIDEAMA-LLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLL 163 (532)
Q Consensus 85 ~~~~~~g~~~~A~~-~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 163 (532)
......+++++|.+ ++..+ ++......++..+.+.|..++|.++.+.-. .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCH
Confidence 34456789999877 54221 112233777888888999999887663211 113445678999
Q ss_pred hHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHH
Q 009556 164 GLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEI 243 (532)
Q Consensus 164 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 243 (532)
++|.++.+.+ .+...|..+...+.+.++++.|.+.|.++.+ |..+...+...|+.+...++-+..
T Consensus 669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 9999886543 4677899999999999999999999988743 334555555566666655555555
Q ss_pred HHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 009556 244 REMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKM 278 (532)
Q Consensus 244 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 278 (532)
...|. ++....+|.+.|++++|++++.++
T Consensus 734 ~~~~~------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 734 ETTGK------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHcCc------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 44431 233334455556666665555443
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.60 E-value=0.026 Score=40.92 Aligned_cols=59 Identities=19% Similarity=0.204 Sum_probs=49.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009556 83 SIQYCCKLGDIDEAMALLAQMQALGFHPSSI-SYASLIEALASVGRTLEADAIFQEMVCFG 142 (532)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~~~~~~A~~~~~~~~~~g 142 (532)
....+.+.|++++|++.|+++.+.. +.+.. .+..+..++...|++++|.+.|++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4556778899999999999988874 45667 88888999999999999999999998765
No 214
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.59 E-value=0.019 Score=41.37 Aligned_cols=66 Identities=9% Similarity=0.024 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhC
Q 009556 425 PNLVMLNVLINAFGVAGK---YKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESS 491 (532)
Q Consensus 425 p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 491 (532)
.|...+..+..++...++ .++|..++++..+... -++.....+...+.+.|++++|+..|+++.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp-~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP-YNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 455556666666554443 5667777776665432 24555666666667777777777777777653
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.37 E-value=0.018 Score=55.16 Aligned_cols=89 Identities=9% Similarity=-0.012 Sum_probs=49.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC---CCC----ChHhHHHHHHHHHhcCChhHHHHHHHHHHHc-----CC-Cc-CHHHHH
Q 009556 121 ALASVGRTLEADAIFQEMVCFG---FNP----KLRFYNILLRGFLKKGLLGLGSRLLMVMEDM-----GI-CR-NQETYE 186 (532)
Q Consensus 121 ~~~~~~~~~~A~~~~~~~~~~g---~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~~-~~~~~~ 186 (532)
.+.+.|++++|++++++..+.. +.| ...+++.|...|...|++++|..++++.... |. .| ...+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 3445566666666666665321 111 1245566666666666666666666655432 21 12 233566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH
Q 009556 187 ILLDYHVNAGRLDDTWLIINEMR 209 (532)
Q Consensus 187 ~li~~~~~~~~~~~a~~~~~~m~ 209 (532)
.|...|...|++++|..++++..
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Confidence 66677777777777777666654
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.37 E-value=0.01 Score=56.72 Aligned_cols=85 Identities=11% Similarity=-0.057 Sum_probs=45.4
Q ss_pred cCChHHHHHHHHHHHHcC---CCC---C-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCC-hHhHHHHHH
Q 009556 90 LGDIDEAMALLAQMQALG---FHP---S-SISYASLIEALASVGRTLEADAIFQEMVCF-----G-FNPK-LRFYNILLR 155 (532)
Q Consensus 90 ~g~~~~A~~~~~~m~~~~---~~~---~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-----g-~~~~-~~~~~~li~ 155 (532)
.|++++|+.++++..+.. +.| + ..+++.+..+|...|++++|..++++.++. | -.|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 356667777666654421 111 1 245666666666667777666666665531 2 1122 234555555
Q ss_pred HHHhcCChhHHHHHHHHHH
Q 009556 156 GFLKKGLLGLGSRLLMVME 174 (532)
Q Consensus 156 ~~~~~g~~~~A~~~~~~m~ 174 (532)
.|...|++++|..++++..
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 5555666655555555543
No 217
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.37 E-value=0.019 Score=45.29 Aligned_cols=95 Identities=12% Similarity=0.053 Sum_probs=62.0
Q ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCcChHHH
Q 009556 409 EQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAG---KYKEALSVYHLMKDIGISP--DLVTYSTLMKAFIRAKKFHKVPE 483 (532)
Q Consensus 409 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~ 483 (532)
..+.+-|.+....+ .++..+...+..++++.+ +.+++..+|++..+.. .| +...+..|.-+|.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 34445555554444 467777777777888877 5567888888777653 23 34455566677788888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHH
Q 009556 484 IYKQMESSGCTPDRKARQILQSAL 507 (532)
Q Consensus 484 ~~~~m~~~g~~p~~~t~~~l~~a~ 507 (532)
.++.+.+ +.|+..--..|.+.+
T Consensus 93 y~~~lL~--ieP~n~QA~~Lk~~i 114 (152)
T 1pc2_A 93 YVRGLLQ--TEPQNNQAKELERLI 114 (152)
T ss_dssp HHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHh--cCCCCHHHHHHHHHH
Confidence 8888887 677654444444333
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.36 E-value=0.018 Score=55.10 Aligned_cols=92 Identities=15% Similarity=0.054 Sum_probs=62.7
Q ss_pred HHHHHhcCCHHHHHHHHHHhccC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CC-CCCCH-HH
Q 009556 399 ANAYAQQGLCEQTVKVLQLMEPE---GIEPN----LVMLNVLINAFGVAGKYKEALSVYHLMKD-----IG-ISPDL-VT 464 (532)
Q Consensus 399 i~~~~~~g~~~~A~~~~~~m~~~---~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~-~~p~~-~~ 464 (532)
+..+...|++++|.+++++..+. -+.|+ ..+++.+..+|...|++++|..++++..+ .| ..|+. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34455677888888887776532 12222 34677888888888888888888887753 12 12332 36
Q ss_pred HHHHHHHHHhcCCcChHHHHHHHHHh
Q 009556 465 YSTLMKAFIRAKKFHKVPEIYKQMES 490 (532)
Q Consensus 465 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (532)
++.|...|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 77888888888888888888887763
No 219
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.13 E-value=0.016 Score=55.42 Aligned_cols=83 Identities=8% Similarity=-0.138 Sum_probs=37.5
Q ss_pred CCHHHHHHHHHHHHHC---CCCCC----hHhHHHHHHHHHhcCChhHHHHHHHHHHHc-----CC-CcC-HHHHHHHHHH
Q 009556 126 GRTLEADAIFQEMVCF---GFNPK----LRFYNILLRGFLKKGLLGLGSRLLMVMEDM-----GI-CRN-QETYEILLDY 191 (532)
Q Consensus 126 ~~~~~A~~~~~~~~~~---g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~~~-~~~~~~li~~ 191 (532)
|++++|..++++.++. -+.|+ ..+++.|...|...|++++|..++++..+. |. .|+ ..+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4555666665555431 11111 234555555555555555555555554321 11 111 2234444444
Q ss_pred HHhcCChHHHHHHHHHH
Q 009556 192 HVNAGRLDDTWLIINEM 208 (532)
Q Consensus 192 ~~~~~~~~~a~~~~~~m 208 (532)
|...|++++|..++++.
T Consensus 392 ~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 392 YMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHH
Confidence 55555555554444443
No 220
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.06 E-value=0.041 Score=39.83 Aligned_cols=59 Identities=14% Similarity=0.070 Sum_probs=40.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChH-hHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 009556 118 LIEALASVGRTLEADAIFQEMVCFGFNPKLR-FYNILLRGFLKKGLLGLGSRLLMVMEDMG 177 (532)
Q Consensus 118 li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 177 (532)
....+...|++++|.+.|++..+.. +.+.. .+..+..+|...|++++|.+.|++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3455667777777777777777654 33455 67777777777777777777777776653
No 221
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.77 E-value=0.11 Score=38.21 Aligned_cols=66 Identities=9% Similarity=-0.083 Sum_probs=44.3
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcC------CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009556 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALG------FHPSSISYASLIEALASVGRTLEADAIFQEMVCF 141 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 141 (532)
+...+-.+...+.+.|++..|+..|+...+.- -.+....+..+..++.+.|+++.|...++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44455667777777888888888777765531 1234556677777777777777777777777654
No 222
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.76 E-value=0.15 Score=36.47 Aligned_cols=66 Identities=15% Similarity=0.013 Sum_probs=40.4
Q ss_pred ChhhHHHHHHHHHHcCC---hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009556 76 SGNSYNKSIQYCCKLGD---IDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFG 142 (532)
Q Consensus 76 ~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g 142 (532)
|+..+..+..++...++ .++|..++++..+.. +.++.....+...+.+.|++++|+..|+.+.+..
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 34445555555544433 567777777766654 4455666666666667777777777777766653
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.67 E-value=0.1 Score=38.35 Aligned_cols=66 Identities=11% Similarity=-0.035 Sum_probs=36.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCH
Q 009556 430 LNVLINAFGVAGKYKEALSVYHLMKDIG------ISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDR 497 (532)
Q Consensus 430 ~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 497 (532)
.-.+...+.+.|+++.|...|++..+.- -.+....+..|..++.+.|++++|...+++..+ +.|+.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~ 79 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEH 79 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCC
Confidence 3455555566666666666665554320 112344556666666666666666666666655 44543
No 224
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.53 E-value=0.76 Score=37.16 Aligned_cols=100 Identities=17% Similarity=0.120 Sum_probs=48.9
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHH
Q 009556 157 FLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKA 236 (532)
Q Consensus 157 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 236 (532)
..+.|+++.|.++.+.+ .+...|..|.+.....|+++-|.+.|.+..+ +..+.-.|.-.|+.+..
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 34456666665555443 2445566666666666666666666555432 22333334444555444
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 009556 237 VGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEK 277 (532)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 277 (532)
.++-+.....|- ++.....+.-.|+++++.++|.+
T Consensus 80 ~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 80 SKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 444443333331 23333344445566665555543
No 225
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.50 E-value=0.58 Score=35.60 Aligned_cols=59 Identities=20% Similarity=0.165 Sum_probs=23.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcC
Q 009556 188 LLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMG 247 (532)
Q Consensus 188 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 247 (532)
.++.+...|+-++-.+++..+.. +-+|++.....+..+|.+.|+..++.+++.++.+.|
T Consensus 97 ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 97 ALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 33444444444444444444221 123333334444444444444444444444444433
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.34 E-value=0.32 Score=42.91 Aligned_cols=92 Identities=12% Similarity=0.024 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHHHcCCCCC---HhHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhc-CCh
Q 009556 93 IDEAMALLAQMQALGFHPS---SISYASLIEALAS-----VGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKK-GLL 163 (532)
Q Consensus 93 ~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~-----~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~-g~~ 163 (532)
...|...+++..+.. |+ ...|..+...|.. .|+.++|.+.|++.++.+..-+..++......+++. |+.
T Consensus 179 l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 356666777777653 44 4567777777777 378888888888877765222366677777777774 777
Q ss_pred hHHHHHHHHHHHcCCC--cCHHHHH
Q 009556 164 GLGSRLLMVMEDMGIC--RNQETYE 186 (532)
Q Consensus 164 ~~A~~~~~~m~~~~~~--~~~~~~~ 186 (532)
+++.+.+++....... |+....+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHH
Confidence 8888888777776544 4443333
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.30 E-value=0.21 Score=39.38 Aligned_cols=82 Identities=10% Similarity=0.009 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--ChHhHHHHHHHHHhcCChhHHH
Q 009556 93 IDEAMALLAQMQALGFHPSSISYASLIEALASVG---RTLEADAIFQEMVCFGFNP--KLRFYNILLRGFLKKGLLGLGS 167 (532)
Q Consensus 93 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~---~~~~A~~~~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~ 167 (532)
...+.+-|.+..+.| .++..+...+..++++.+ +.++++.+++...+.. .| +...+-.|.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 445666677666665 477888888888888887 5668889998888764 24 3455566677778889999999
Q ss_pred HHHHHHHHc
Q 009556 168 RLLMVMEDM 176 (532)
Q Consensus 168 ~~~~~m~~~ 176 (532)
+.++.+.+.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 888888874
No 228
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.12 E-value=0.78 Score=34.90 Aligned_cols=140 Identities=11% Similarity=0.058 Sum_probs=78.2
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHH
Q 009556 298 CKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPE 377 (532)
Q Consensus 298 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 377 (532)
.-.|..++..++..+.... .+..-|+.++--....-+-+-..++++.+-+. .|. ..+|+.....
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHH
Confidence 4457777777777776653 24455566655555555555555555554332 111 1233333333
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009556 378 ECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIG 457 (532)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 457 (532)
..+-.+ ..+.......++.....|.-++-.+++..+... .+|+....-.+..+|.+.|+..+|.+++.++-+.|
T Consensus 82 ~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 82 ECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 332221 112233455566666777777777777775332 25666767777777777777777777777777666
Q ss_pred CC
Q 009556 458 IS 459 (532)
Q Consensus 458 ~~ 459 (532)
++
T Consensus 156 ~k 157 (172)
T 1wy6_A 156 EK 157 (172)
T ss_dssp CH
T ss_pred hH
Confidence 53
No 229
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.02 E-value=0.41 Score=42.19 Aligned_cols=91 Identities=7% Similarity=-0.022 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHCCCCCC---hHhHHHHHHHHHh-----cCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc-CCh
Q 009556 128 TLEADAIFQEMVCFGFNPK---LRFYNILLRGFLK-----KGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNA-GRL 198 (532)
Q Consensus 128 ~~~A~~~~~~~~~~g~~~~---~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-~~~ 198 (532)
...|..++++..+.. |+ -..|..+...|.+ .|+.++|.+.|++..+.+..-+..++....+.++.. |+.
T Consensus 179 l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 455666777776653 44 4577777777777 478888888888887765433467777777777774 778
Q ss_pred HHHHHHHHHHHHCCCC--cCHHhH
Q 009556 199 DDTWLIINEMRSKGFQ--LNSFVY 220 (532)
Q Consensus 199 ~~a~~~~~~m~~~~~~--~~~~~~ 220 (532)
+++.+.+++....... |+....
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~la 280 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLL 280 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHH
Confidence 8888888888776555 444333
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.95 E-value=0.47 Score=36.92 Aligned_cols=54 Identities=4% Similarity=-0.041 Sum_probs=31.5
Q ss_pred CChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCc
Q 009556 161 GLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQL 215 (532)
Q Consensus 161 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 215 (532)
++.++|.++|+.+.+.+-.- ...|......=.+.|+++.|.+++.+....+.+|
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 56666666666665442222 4555555555566666666666666666655443
No 231
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.82 E-value=1.3 Score=35.83 Aligned_cols=19 Identities=0% Similarity=-0.137 Sum_probs=8.6
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 009556 399 ANAYAQQGLCEQTVKVLQL 417 (532)
Q Consensus 399 i~~~~~~g~~~~A~~~~~~ 417 (532)
...+...|+++++.++|.+
T Consensus 96 f~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 96 LLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHH
Confidence 3334444455555444433
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.63 E-value=0.8 Score=35.67 Aligned_cols=51 Identities=14% Similarity=0.092 Sum_probs=24.4
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCC
Q 009556 371 GRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEG 422 (532)
Q Consensus 371 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 422 (532)
++.++|.++|+.+.+..-.. ...|.....--.++|++..|.+++......+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 45555555555554432121 3444444444445555555555555555443
No 233
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.46 E-value=0.00031 Score=65.94 Aligned_cols=147 Identities=14% Similarity=0.043 Sum_probs=84.3
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHH
Q 009556 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (532)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (532)
+..|..|..+..+.+.+.+|++.|=+. .|+..|..+|.+..+.|.+++-+..+...++. ..+..+=+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHH
Confidence 345777777777777777776554222 25556667777777777777777766655543 2344455667777
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--------------------CCCcC
Q 009556 157 FLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSK--------------------GFQLN 216 (532)
Q Consensus 157 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--------------------~~~~~ 216 (532)
|++.+++.+-.+++. .||..-...+.+-|...|.++.|.-+|..+..- .-.-+
T Consensus 126 yAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns 198 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS 198 (624)
T ss_dssp HHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCS
T ss_pred HHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 777776655433321 145555555556666666655555554433110 00124
Q ss_pred HHhHHHHHHHHHcCCChHHHHH
Q 009556 217 SFVYGKVIGLYRDNGMWKKAVG 238 (532)
Q Consensus 217 ~~~~~~ll~~~~~~~~~~~a~~ 238 (532)
..||..+-.+|...+.+..|.-
T Consensus 199 ~ktWKeV~~ACvd~~EfrLAqi 220 (624)
T 3lvg_A 199 TRTWKEVCFACVDGKEFRLAQM 220 (624)
T ss_dssp SCSHHHHTHHHHHSCTTTTTTH
T ss_pred hhHHHHHHHHHhCchHHHHHHH
Confidence 5566666667766666655543
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.05 E-value=0.26 Score=37.31 Aligned_cols=86 Identities=12% Similarity=0.021 Sum_probs=50.4
Q ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCcChHHH
Q 009556 409 EQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKE---ALSVYHLMKDIGISP--DLVTYSTLMKAFIRAKKFHKVPE 483 (532)
Q Consensus 409 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~ 483 (532)
..+.+-+.+....| .++..+--.+..++.+.....+ ++.++++..+.+ .| .....-.|.-++.+.|++++|.+
T Consensus 18 ~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 18 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 33344444443333 3566666666677777666555 666777666543 12 22334455667777777777777
Q ss_pred HHHHHHhCCCCCCHH
Q 009556 484 IYKQMESSGCTPDRK 498 (532)
Q Consensus 484 ~~~~m~~~g~~p~~~ 498 (532)
.++.+.+ +.|+..
T Consensus 96 ~~~~lL~--~eP~n~ 108 (126)
T 1nzn_A 96 YVRGLLQ--TEPQNN 108 (126)
T ss_dssp HHHHHHH--HCTTCH
T ss_pred HHHHHHH--hCCCCH
Confidence 7777776 566543
No 235
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.27 E-value=0.0019 Score=60.77 Aligned_cols=217 Identities=15% Similarity=0.166 Sum_probs=143.8
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHH
Q 009556 75 FSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILL 154 (532)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li 154 (532)
-|+..|..+|....+.|.+++-+..+...++. ..++..=+.|+-+|++.++..+-.+++ ..|+..-...+.
T Consensus 81 ~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VG 151 (624)
T 3lvg_A 81 DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVG 151 (624)
T ss_dssp SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHH
Confidence 46677899999999999999999988877765 345555668999999999876544332 146666667777
Q ss_pred HHHHhcCChhHHHHHHHHHHHcC--------------------CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 009556 155 RGFLKKGLLGLGSRLLMVMEDMG--------------------ICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQ 214 (532)
Q Consensus 155 ~~~~~~g~~~~A~~~~~~m~~~~--------------------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 214 (532)
.-|...|.++.|.-+|..+..-. -.-++.||-.+-.+|...+++.-|.-.--.+.-.
T Consensus 152 Drcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh--- 228 (624)
T 3lvg_A 152 DRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH--- 228 (624)
T ss_dssp HHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---
T ss_pred HHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---
Confidence 77888887777777666543211 1246678999999999999887776554444322
Q ss_pred cCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC-CCCC------CH
Q 009556 215 LNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQE-SIRP------DI 287 (532)
Q Consensus 215 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p------~~ 287 (532)
..-...++..|-..|.+++-+.+++...... ......|+-|.-.|+|-. .++..+.++..-.+ +++. ..
T Consensus 229 --adeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY~-PeKlmEHlklf~sriNipKviracE~a 304 (624)
T 3lvg_A 229 --ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQA 304 (624)
T ss_dssp --SSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTT
T ss_pred --HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 1122345566778888888888888776332 346777888887777763 34444444332221 1211 23
Q ss_pred HHHHHHHHHHHHcCCHHHHH
Q 009556 288 VTWNSLIRWHCKAGDVAKAL 307 (532)
Q Consensus 288 ~~~~~li~~~~~~g~~~~A~ 307 (532)
..|..++-.|.+-.+++.|.
T Consensus 305 hLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 305 HLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp TCHHHHHHHHHHHTCHHHHH
T ss_pred hhHHHHHHHHhcchhHHHHH
Confidence 34677777777777777664
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.87 E-value=0.7 Score=34.93 Aligned_cols=92 Identities=10% Similarity=0.024 Sum_probs=60.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCC--ChHhHHHHHHHH
Q 009556 83 SIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLE---ADAIFQEMVCFGFNP--KLRFYNILLRGF 157 (532)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~---A~~~~~~~~~~g~~~--~~~~~~~li~~~ 157 (532)
++..-.....+..+.+-|.+....| .++..+--.+..++.+..+... ++.+++.+.+.+ .| .....-.|.-++
T Consensus 7 ~l~~~~~~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~ 84 (126)
T 1nzn_A 7 VLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGN 84 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHH
Confidence 3444444455566667777666655 3677777777778887776655 788888877654 23 233444566677
Q ss_pred HhcCChhHHHHHHHHHHHc
Q 009556 158 LKKGLLGLGSRLLMVMEDM 176 (532)
Q Consensus 158 ~~~g~~~~A~~~~~~m~~~ 176 (532)
.+.|+++.|.+.++.+.+.
T Consensus 85 yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 85 YRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHh
Confidence 7888888888888877764
No 237
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.79 E-value=0.62 Score=43.79 Aligned_cols=68 Identities=24% Similarity=0.302 Sum_probs=40.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHH
Q 009556 395 FCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMK-----DIGISPDLV 463 (532)
Q Consensus 395 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~~~~p~~~ 463 (532)
...++..+...|++++|...+..+.... +-+...|..++.++.+.|+..+|.+.|+++. +.|+.|...
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 3444555566666666666666655442 3455566666666666666666666666654 236666554
No 238
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=91.79 E-value=14 Score=38.64 Aligned_cols=276 Identities=14% Similarity=0.072 Sum_probs=154.4
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHhccCCHHHHHHHHHHHHhCCC-------CCCHHHHHHHHHH
Q 009556 226 LYRDNGMWKKAVGIVEEIREMGLSLDRQI--YNSIIDTFGKYGELVEALEVFEKMQQESI-------RPDIVTWNSLIRW 296 (532)
Q Consensus 226 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~-------~p~~~~~~~li~~ 296 (532)
+....|+.++++.+++.....+...+..+ -..+.-+....|..+++.+++.......- .+....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 34567777777777766554211123332 22333344555655567777766554211 0111222233333
Q ss_pred HHHcCC-HHHHHHHHHHHHHCCCCCCHHH--HH--HHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHH--h
Q 009556 297 HCKAGD-VAKALELFTQMQEQGFYPDPKI--FI--TIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYG--Q 369 (532)
Q Consensus 297 ~~~~g~-~~~A~~~~~~m~~~~~~~~~~~--~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~ 369 (532)
++-.|. -+++.+.+..+.... +... .. ++...+...|+.+....++..+.+.. +..+...++.+++ .
T Consensus 463 la~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALIN 536 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHT
T ss_pred HHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhh
Confidence 333342 246666666666532 2211 22 22333456678888888887776542 3344444444444 7
Q ss_pred cCCcccHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009556 370 YGRFRDPEECIAALKLEGLQPSGSMFC--ILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEAL 447 (532)
Q Consensus 370 ~g~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 447 (532)
.|+.+.+..+++.+.... .|....-. .+.-+|+-.|+.....+++..+.+.. ..++.....+.-++...|+.+.+.
T Consensus 537 ~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 537 YGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp TTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred CCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHH
Confidence 799999999998887642 23222222 23445677789888888998887642 233333333334555577777788
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc-ChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhh
Q 009556 448 SVYHLMKDIGISPDLVTYSTLMKAFIRAKKF-HKVPEIYKQMESSGCTPDRKARQILQSALVVLEQR 513 (532)
Q Consensus 448 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~t~~~l~~a~~~~~~~ 513 (532)
++++.+.+.+ .|.+..-..+.-+....|.. .++..++..+.. .+|..+....+-++-..+..
T Consensus 615 rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~Ig~g 677 (963)
T 4ady_A 615 RIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSMILIQ 677 (963)
T ss_dssp HHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHhcC
Confidence 8887666653 45555445555566666665 468888888873 56777666666666555543
No 239
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.31 E-value=0.93 Score=42.57 Aligned_cols=72 Identities=11% Similarity=0.064 Sum_probs=50.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCCcCHHHHHH
Q 009556 115 YASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMED-----MGICRNQETYEI 187 (532)
Q Consensus 115 ~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~~~~ 187 (532)
...++..+...|++++|...+..+.... +.+...|..++.++.+.|+..+|++.|+...+ .|+.|...+-..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 4456666777777777777777776554 45667777788888888888888777777643 477777765443
No 240
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=91.06 E-value=1.9 Score=30.76 Aligned_cols=64 Identities=13% Similarity=0.168 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 009556 443 YKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSAL 507 (532)
Q Consensus 443 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~a~ 507 (532)
.-+..+-++.+....+.|++....+.+++|.+.+++..|.++++-.+.+ +.+...+|..+++-+
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqEl 89 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 89 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHHH
Confidence 3344444555555555666666666666666666666666666665533 222233454444443
No 241
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.42 E-value=1.8 Score=44.26 Aligned_cols=126 Identities=17% Similarity=0.243 Sum_probs=78.1
Q ss_pred HHHHHHHHHcCC-hHHHHHHHHHHHHcCCCCCHhH-H-HHHHHHHHhcC-CHHHHHHHHHHHHHC------CCCC-ChH-
Q 009556 81 NKSIQYCCKLGD-IDEAMALLAQMQALGFHPSSIS-Y-ASLIEALASVG-RTLEADAIFQEMVCF------GFNP-KLR- 148 (532)
Q Consensus 81 ~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~-~-~~li~~~~~~~-~~~~A~~~~~~~~~~------g~~~-~~~- 148 (532)
..+++.+...++ ++.|+.+|+++.... |...+ + ..++..+...+ +--+|.+++.+..+. ..++ +..
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 444444445566 588999999998874 43333 2 22333332222 223355555544321 1111 111
Q ss_pred ---------hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009556 149 ---------FYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMR 209 (532)
Q Consensus 149 ---------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 209 (532)
....=.+.+...|+++.|+++-++.....+ -+-.+|..|..+|.+.|+++.|+-.++.+.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aP-seF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELAL-DSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCc-hhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 122223455678999999999999887532 457799999999999999999999888873
No 242
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.75 E-value=14 Score=35.19 Aligned_cols=94 Identities=14% Similarity=0.109 Sum_probs=50.8
Q ss_pred HHHHHHHHhcCCcccHHHHHHHHHHcCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHhcc----CCCCCC--HHH
Q 009556 361 AILVDIYGQYGRFRDPEECIAALKLEGLQP-S----GSMFCILANAYAQQGLCEQTVKVLQLMEP----EGIEPN--LVM 429 (532)
Q Consensus 361 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~--~~~ 429 (532)
..|...|...|++.+|.+++..+...-... + ...+...++.|...+++..|..++..+.. ....|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 445566666666666666666654321111 1 12344555666666777777666665431 111222 134
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 009556 430 LNVLINAFGVAGKYKEALSVYHLMK 454 (532)
Q Consensus 430 ~~~li~~~~~~g~~~~A~~~~~~m~ 454 (532)
+...+..+...+++.+|.+.|.++.
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4556666666777777666666554
No 243
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.39 E-value=2 Score=43.91 Aligned_cols=53 Identities=17% Similarity=0.068 Sum_probs=37.0
Q ss_pred HHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009556 400 NAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLM 453 (532)
Q Consensus 400 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 453 (532)
.-+...|+++-|+++.++....- +-+-.+|..|..+|...|+++.|+-.++.+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34555677777777777776652 345677777777777777777777777665
No 244
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=88.35 E-value=3.4 Score=31.29 Aligned_cols=64 Identities=13% Similarity=0.168 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 009556 443 YKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSAL 507 (532)
Q Consensus 443 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~a~ 507 (532)
.-+..+-++.+...++.|++....+.+++|.+.+++..|.++++-.+.+ +.+...+|..+++-+
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqEl 132 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 132 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHHH
Confidence 3344555555566667777777777777777777777777777777643 333344566665554
No 245
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=88.13 E-value=5.6 Score=30.20 Aligned_cols=78 Identities=5% Similarity=-0.080 Sum_probs=54.1
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCHHHH
Q 009556 424 EPNLVMLNVLINAFGVAGKY---KEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKAR 500 (532)
Q Consensus 424 ~p~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 500 (532)
.|+..+--.+..++.+..+. .+++.++++..+.+..-....+-.|.-++.+.|++++|.+..+.+.+ +.|+..-.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~QA 114 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQV 114 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCHHH
Confidence 56777666677777777654 45777888777654222344566777788889999999999888887 67766544
Q ss_pred HHH
Q 009556 501 QIL 503 (532)
Q Consensus 501 ~~l 503 (532)
..|
T Consensus 115 ~~L 117 (134)
T 3o48_A 115 GAL 117 (134)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 246
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=88.11 E-value=28 Score=36.49 Aligned_cols=223 Identities=14% Similarity=0.043 Sum_probs=104.6
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCC---H--HHHHHHHHHHH
Q 009556 263 GKYGELVEALEVFEKMQQESIRPD--IVTWNSLIRWHCKAGDVAKALELFTQMQEQGF--YPD---P--KIFITIISCLG 333 (532)
Q Consensus 263 ~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~---~--~~~~~ll~~~~ 333 (532)
...|+.++++.+++.....+...+ +..=..+.-+....|..+++.+++.......- .-+ . ..-..+.-++.
T Consensus 385 Ih~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla 464 (963)
T 4ady_A 385 IHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLA 464 (963)
T ss_dssp HTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred hccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHH
Confidence 345566666666655443210112 22223333445556665667776666553211 001 1 11112222222
Q ss_pred ccCC-HHHHHHHHHHHHhcCCCCCH--hHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHH--HHHhcCCH
Q 009556 334 ELGK-WDVIKKNFENMKDRGHGKIG--AIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILAN--AYAQQGLC 408 (532)
Q Consensus 334 ~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~ 408 (532)
-.|. -+++...+..+...... .. ..--++...+.-.|+.+....++..+.+.. +..+...+.- ++...|+.
T Consensus 465 ~~GS~~eev~e~L~~~L~dd~~-~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 465 AMGSANIEVYEALKEVLYNDSA-TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp STTCCCHHHHHHHHHHHHTCCH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCG
T ss_pred hcCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCCh
Confidence 2232 23444444444432211 11 111123333445566666666666655432 2233333333 34456777
Q ss_pred HHHHHHHHHhccCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHH
Q 009556 409 EQTVKVLQLMEPEGIEPNLVML--NVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYK 486 (532)
Q Consensus 409 ~~A~~~~~~m~~~~~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 486 (532)
+.+..+++.+.... .|....- .++..+|+-.|+.....++++.+.+. ...++.....+.-++...|+.+.+.++++
T Consensus 541 e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 541 ELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred HHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 77777777766531 2222211 23344566777877777788877764 22233333333334555677777777776
Q ss_pred HHHhC
Q 009556 487 QMESS 491 (532)
Q Consensus 487 ~m~~~ 491 (532)
.+.+.
T Consensus 619 ~L~~~ 623 (963)
T 4ady_A 619 LLSKS 623 (963)
T ss_dssp TGGGC
T ss_pred HHHhc
Confidence 66553
No 247
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.10 E-value=3.4 Score=29.51 Aligned_cols=63 Identities=19% Similarity=0.326 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHH
Q 009556 302 DVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVD 365 (532)
Q Consensus 302 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 365 (532)
+.-+..+-++.+....+.|++.+..+.+.+|.+.+++..|.++++.+...- .....+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 344555556666666667777777777777777777777777777666432 222344554443
No 248
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.81 E-value=12 Score=40.80 Aligned_cols=51 Identities=10% Similarity=0.091 Sum_probs=26.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009556 83 SIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEM 138 (532)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~ 138 (532)
++..+.+.+.++.|.++.... +.++..--.+..++...|++++|.+.|.+.
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 444555556655555443322 223333334455666667777777766553
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.69 E-value=21 Score=38.97 Aligned_cols=216 Identities=10% Similarity=0.047 Sum_probs=132.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc----C----------------
Q 009556 293 LIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDR----G---------------- 352 (532)
Q Consensus 293 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~---------------- 352 (532)
++..+...+.++-+.++..-. +.++..--.+..++...|++++|.+.|.+.... .
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 444455566666555543322 234444445666788899999999999765311 0
Q ss_pred --CCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCC
Q 009556 353 --HGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSG----SMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPN 426 (532)
Q Consensus 353 --~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 426 (532)
...-..-|..++..+.+.+.++.+.++-+...+.....+. ..|..+..++...|++++|...+-.+.... --
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~--~r 970 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP--LK 970 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS--SC
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH--HH
Confidence 0111234677888899999999999888777654332222 258888999999999999999998776543 34
Q ss_pred HHHHHHHHHHHHhcCCHHH------------HHHHHHHHH-HC-CCCCCHHHHHHHHHHHHhcCCcChHHHH-HHHHHhC
Q 009556 427 LVMLNVLINAFGVAGKYKE------------ALSVYHLMK-DI-GISPDLVTYSTLMKAFIRAKKFHKVPEI-YKQMESS 491 (532)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~------------A~~~~~~m~-~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~~ 491 (532)
...+..|+...+..|..+. ..+++..-. .. .+...+.-|..|-.-+...|++..|-.+ |+...+.
T Consensus 971 ~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL 1050 (1139)
T 4fhn_B 971 KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSRY 1050 (1139)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHHh
Confidence 5667778877777665444 344443221 11 1111223466677777788888776554 5555432
Q ss_pred C---CCC-------CHHHHHHHHHHHHHHhhhhh
Q 009556 492 G---CTP-------DRKARQILQSALVVLEQRRC 515 (532)
Q Consensus 492 g---~~p-------~~~t~~~l~~a~~~~~~~~~ 515 (532)
+ -.+ -...|-+++++|.-.+.+.+
T Consensus 1051 ~~~~~~~~~~~~~~q~~~yL~~INaLslvd~~~a 1084 (1139)
T 4fhn_B 1051 ISTTELIGKKERTFIIEHYLIVLNTLELLPKEDT 1084 (1139)
T ss_dssp HHHHCCCCHHHHHHHHHHHHHHHHHHHHSCSSCC
T ss_pred hhccccccchhHHHHHHHHHHHHHHHhcCChhhC
Confidence 1 111 12467778888877765443
No 250
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=83.38 E-value=10 Score=30.10 Aligned_cols=61 Identities=10% Similarity=-0.014 Sum_probs=46.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCH-------hHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009556 80 YNKSIQYCCKLGDIDEAMALLAQMQALG-FHPSS-------ISYASLIEALASVGRTLEADAIFQEMVC 140 (532)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~-------~~~~~li~~~~~~~~~~~A~~~~~~~~~ 140 (532)
+-.-++.+...|.++.|+-+.+.+.... ..|+. .++..+.+++...+++.+|...|++.++
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3455778889999999999888865432 12332 2566778899999999999999999753
No 251
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.31 E-value=13 Score=35.28 Aligned_cols=97 Identities=10% Similarity=-0.003 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHc---CCCcCHHH--HH
Q 009556 114 SYASLIEALASVGRTLEADAIFQEMVCF--GFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDM---GICRNQET--YE 186 (532)
Q Consensus 114 ~~~~li~~~~~~~~~~~A~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~--~~ 186 (532)
+...+...+.+.|+++.|.+.|.++... +...-...+-.+++.+...+++..+...+.++... +..|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 4556666666677777777777666643 22223455666666666677777766666665432 21122111 00
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 009556 187 ILLDYHVNAGRLDDTWLIINEMRS 210 (532)
Q Consensus 187 ~li~~~~~~~~~~~a~~~~~~m~~ 210 (532)
.-...+...+++..|...|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 111122345677777776666543
No 252
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=82.10 E-value=13 Score=28.16 Aligned_cols=63 Identities=19% Similarity=0.326 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHH
Q 009556 302 DVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVD 365 (532)
Q Consensus 302 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 365 (532)
|.-+..+-++.+....+.|++.+..+.+.+|-+.+++..|.++++-+..+- .+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 344555566666666778888888888888888888888888887776543 223445655544
No 253
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=81.95 E-value=16 Score=28.20 Aligned_cols=78 Identities=5% Similarity=-0.080 Sum_probs=50.5
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCHHHH
Q 009556 424 EPNLVMLNVLINAFGVAGKY---KEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKAR 500 (532)
Q Consensus 424 ~p~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 500 (532)
.|+..+--.+..++.+..+. .+++.++++..+.+..-.....-.|.-++.+.|++++|.+..+.+.+ +.|+..-.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcHHH
Confidence 46666666667777776654 45677777776643222333445566788888888888888888887 66765443
Q ss_pred HHH
Q 009556 501 QIL 503 (532)
Q Consensus 501 ~~l 503 (532)
..|
T Consensus 114 ~~L 116 (144)
T 1y8m_A 114 GAL 116 (144)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 254
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=80.12 E-value=33 Score=30.71 Aligned_cols=111 Identities=5% Similarity=-0.082 Sum_probs=51.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHH----HHHHHHCCCCCChHhHHHHHH
Q 009556 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAI----FQEMVCFGFNPKLRFYNILLR 155 (532)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~~~~~g~~~~~~~~~~li~ 155 (532)
|.++..-|.+++++++|++++..- ...+.+.|+...|-++ .+-..+.+.+++......++.
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~g---------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~ 100 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQG---------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVR 100 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHH---------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 344555555555555555544331 2223344555444443 334445566666666666666
Q ss_pred HHHhcCChh-HHHHHHHHHH----HcC--CCcCHHHHHHHHHHHHhcCChHHHHHHH
Q 009556 156 GFLKKGLLG-LGSRLLMVME----DMG--ICRNQETYEILLDYHVNAGRLDDTWLII 205 (532)
Q Consensus 156 ~~~~~g~~~-~A~~~~~~m~----~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~ 205 (532)
.+.....-+ .=.++.+++. +.| ..-++.....+...|.+.+++.+|..-|
T Consensus 101 l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 101 LIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 555432211 1122222222 221 1134455555666666666666655544
No 255
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.03 E-value=18 Score=34.34 Aligned_cols=62 Identities=5% Similarity=-0.162 Sum_probs=43.2
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009556 148 RFYNILLRGFLKKGLLGLGSRLLMVMEDM--GICRNQETYEILLDYHVNAGRLDDTWLIINEMR 209 (532)
Q Consensus 148 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 209 (532)
.+...+...|.+.|+++.|.+.|.++... +...-...+-..++.+...+++..+...+.+..
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 35667778888888888888888887754 233344566677777777777777777776654
No 256
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=79.75 E-value=22 Score=29.31 Aligned_cols=57 Identities=18% Similarity=0.335 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCH
Q 009556 441 GKYKEALSVYHLMKDIGISPD-LVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDR 497 (532)
Q Consensus 441 g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 497 (532)
+...++.++|..|...|+--. ...|......+...|++++|.++|+.-++.+-.|-.
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYN 150 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 335566666666665554332 334556666666666666666666666666666644
No 257
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=79.38 E-value=53 Score=32.75 Aligned_cols=141 Identities=11% Similarity=0.091 Sum_probs=72.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHhHHHHHHHH
Q 009556 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSS-ISYASLIEALASVGRTLEADAIFQEMVCFGFNPK-LRFYNILLRGF 157 (532)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~ 157 (532)
|.....+ .+.|+++.+..+...+... +..+ ..|..+...+ ......+....+ .+..-.|- ...-+..+..+
T Consensus 10 ~~~a~~a-~~~~~~~~~~~l~~~l~~~--pL~~yl~y~~l~~~l-~~~~~~ev~~Fl---~~~~~~p~~~~Lr~~~l~~l 82 (618)
T 1qsa_A 10 YAQIKQA-WDNRQMDVVEQMMPGLKDY--PLYPYLEYRQITDDL-MNQPAVTVTNFV---RANPTLPPARTLQSRFVNEL 82 (618)
T ss_dssp HHHHHHH-HHTTCHHHHHHHSGGGTTS--TTHHHHHHHHHHHTG-GGCCHHHHHHHH---HHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHCCCHHHHHHHHHhhcCC--CcHHHHHHHHHHhCc-ccCCHHHHHHHH---HHCCCChhHHHHHHHHHHHH
Confidence 3333443 4668888877776665432 1111 1233322222 122344333333 33211222 23334556667
Q ss_pred HhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCCh
Q 009556 158 LKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMW 233 (532)
Q Consensus 158 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 233 (532)
.+.+++......+.. .+.+...-.....+....|+..+|......+-..|-. .......++..+.+.|..
T Consensus 83 ~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~g~l 152 (618)
T 1qsa_A 83 ARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASGKQ 152 (618)
T ss_dssp HHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTTCS
T ss_pred HhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHCCCC
Confidence 777777766664442 2245555556677777888887777777776555422 344455566655554443
No 258
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=79.17 E-value=35 Score=30.51 Aligned_cols=81 Identities=10% Similarity=-0.054 Sum_probs=43.8
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHCCCCCCHHHHH
Q 009556 250 LDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKA---GDVAKALELFTQMQEQGFYPDPKIFI 326 (532)
Q Consensus 250 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~~~~~~~~~~ 326 (532)
-++.....+...|.+.|++.+|+..|-.-.. -+...+..++.-+... |...++-- ..-.
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~----~s~~~~a~~l~~w~~~~~~~~~~e~dl--------------f~~R 193 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLGTH----DSMIKYVDLLWDWLCQVDDIEDSTVAE--------------FFSR 193 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTSCH----HHHHHHHHHHHHHHHHTTCCCHHHHHH--------------HHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhCCC----ccHHHHHHHHHHHHHhcCCCCcchHHH--------------HHHH
Confidence 3677778888888888888888877642110 0344455554444443 33333211 1112
Q ss_pred HHHHHHHccCCHHHHHHHHHHHH
Q 009556 327 TIISCLGELGKWDVIKKNFENMK 349 (532)
Q Consensus 327 ~ll~~~~~~~~~~~a~~~~~~~~ 349 (532)
.++ .|.-.++...|..+++...
T Consensus 194 aVL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 194 LVF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHH-HHHHTTBHHHHHHHHHHHH
T ss_pred HHH-HHHHhcCHHHHHHHHHHHH
Confidence 222 2345667777777766554
No 259
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=77.22 E-value=7.7 Score=33.66 Aligned_cols=57 Identities=19% Similarity=0.201 Sum_probs=45.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009556 84 IQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCF 141 (532)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 141 (532)
+..+.+.|++++|++....-++.. +.|...-..+++.+|-.|++++|.+-++...+.
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 345567888999998888777764 667777788889999999999998888877765
No 260
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=76.84 E-value=15 Score=33.69 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHH
Q 009556 79 SYNKSIQYCCKLGDIDEAMALLAQMQ 104 (532)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~ 104 (532)
....+|.-|...++.++|...++++.
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 35778999999999999999999875
No 261
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=75.65 E-value=12 Score=32.58 Aligned_cols=56 Identities=11% Similarity=0.143 Sum_probs=45.4
Q ss_pred HHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009556 400 NAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDI 456 (532)
Q Consensus 400 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 456 (532)
....+.|++++|++....-++.. +-|...-..|+..+|-.|+++.|.+-++...+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34567889999998888777664 567788888899999999999999888888764
No 262
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=73.70 E-value=52 Score=29.71 Aligned_cols=112 Identities=14% Similarity=0.061 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHH----HHHHHCCCCCChHhHHHHH
Q 009556 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIF----QEMVCFGFNPKLRFYNILL 154 (532)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~----~~~~~~g~~~~~~~~~~li 154 (532)
.|.++..-|.+++++++|++++..- ...+.+.|+...|-++- +-..+.++++|.....-|+
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G---------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV---------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH---------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3456666667777777776654332 22233445554444433 4444556666766666666
Q ss_pred HHHHhcCChhH-HHHHHHHHH----HcC--CCcCHHHHHHHHHHHHhcCChHHHHHHH
Q 009556 155 RGFLKKGLLGL-GSRLLMVME----DMG--ICRNQETYEILLDYHVNAGRLDDTWLII 205 (532)
Q Consensus 155 ~~~~~~g~~~~-A~~~~~~m~----~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~ 205 (532)
..+.....-+- =.++.+++. +.| ..-+......+...|.+.+++.+|..-|
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 66655443111 111222221 111 2234444555555566666665555544
No 263
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=73.36 E-value=28 Score=26.44 Aligned_cols=17 Identities=18% Similarity=0.231 Sum_probs=6.4
Q ss_pred HHHcCCHHHHHHHHHHH
Q 009556 297 HCKAGDVAKALELFTQM 313 (532)
Q Consensus 297 ~~~~g~~~~A~~~~~~m 313 (532)
+.+.|++++|.+..+.+
T Consensus 88 ~yklgdY~~Ar~y~d~l 104 (134)
T 3o48_A 88 CYKLGEYSMAKRYVDTL 104 (134)
T ss_dssp HHHHTCHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHH
Confidence 33333333333333333
No 264
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=71.68 E-value=85 Score=31.31 Aligned_cols=334 Identities=9% Similarity=-0.020 Sum_probs=161.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhc
Q 009556 81 NKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKK 160 (532)
Q Consensus 81 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 160 (532)
+.-+..+.+.+++...+..+.. .+.+...-.....+....|+..+|......+-..| ......+..++..+.+.
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~ 149 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRAS 149 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHC
Confidence 3344555666666666654432 13455555566677777777777777666666555 34455666677777666
Q ss_pred CChhH--HHHHHHHHHHcCC-----------CcCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHH---hHHHH
Q 009556 161 GLLGL--GSRLLMVMEDMGI-----------CRNQET-YEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSF---VYGKV 223 (532)
Q Consensus 161 g~~~~--A~~~~~~m~~~~~-----------~~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~l 223 (532)
|.+.. ...=++.+...|- .++... ...++..+. ++..+..... . +.++.. .+...
T Consensus 150 g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~~---~--~~~~~~~~~~~~~~ 221 (618)
T 1qsa_A 150 GKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFAR---T--TGATDFTRQMAAVA 221 (618)
T ss_dssp TCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHH---H--SCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHHh---c--cCCChhhHHHHHHH
Confidence 55433 2222222222211 011100 011111111 1111111111 0 111221 11112
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 009556 224 IGLYRDNGMWKKAVGIVEEIREMGLSLDRQIY----NSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCK 299 (532)
Q Consensus 224 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 299 (532)
+.-+.+ .+.+.|...+....+... .+.... ..+...+...+...++...+....... .+.....-.+....+
T Consensus 222 ~~rlar-~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr 297 (618)
T 1qsa_A 222 FASVAR-QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALG 297 (618)
T ss_dssp HHHHHH-HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHH
T ss_pred HHHHHh-cCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHH
Confidence 222333 366888888877765432 233222 222223334443456666666654432 233333344444556
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCcccHHHH
Q 009556 300 AGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEEC 379 (532)
Q Consensus 300 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 379 (532)
.|+++.|...|..|..... ......-.+..++...|+.++|..+|..+.+. ...|..+. ..+.|..... .
T Consensus 298 ~~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~-----~~fYg~lA--a~~Lg~~~~~-~- 367 (618)
T 1qsa_A 298 TGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQQ-----RGFYPMVA--AQRIGEEYEL-K- 367 (618)
T ss_dssp HTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----CSHHHHHH--HHHTTCCCCC-C-
T ss_pred CCCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC-----CChHHHHH--HHHcCCCCCC-C-
Confidence 7888888888888765321 23444556667777888888888888888642 12344332 2233321100 0
Q ss_pred HHHHHHcCCCC---CHH---HHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009556 380 IAALKLEGLQP---SGS---MFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVY 450 (532)
Q Consensus 380 ~~~~~~~~~~~---~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 450 (532)
...+.+ ... .-..-+..+...|....|...+..+.+. .+......+.......|.++.+....
T Consensus 368 -----~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~~~~~v~~~ 436 (618)
T 1qsa_A 368 -----IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQAT 436 (618)
T ss_dssp -----CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -----CCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 000000 000 0112344567788888888888877653 23333334445555666666665443
No 265
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=71.30 E-value=62 Score=29.58 Aligned_cols=76 Identities=11% Similarity=0.110 Sum_probs=45.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009556 395 FCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGK--YKEALSVYHLMKDIGISPDLVTYSTLMKA 471 (532)
Q Consensus 395 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 471 (532)
...++.-|...|+.++|.+.++++....+.+ ......+..++-+.++ .+...+++..+.+.|+-+.......+...
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhh-e~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~v 297 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 297 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHH-HHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchH-HHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 5667788888899999999998886422221 2233444444444333 34577777777777665544444444333
No 266
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=70.83 E-value=60 Score=29.27 Aligned_cols=81 Identities=6% Similarity=-0.035 Sum_probs=43.5
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009556 250 LDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITII 329 (532)
Q Consensus 250 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll 329 (532)
-++.....+...|.+.+++.+|...|- . |..+....+..++.-+...+...+ ++...-..++
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~e--------------~dlfiaRaVL 195 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDESHT--------------APLYCARAVL 195 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGGG--------------HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCcc--------------HHHHHHHHHH
Confidence 366677777788888888888887762 1 223333555555544444433211 1222222233
Q ss_pred HHHHccCCHHHHHHHHHHHH
Q 009556 330 SCLGELGKWDVIKKNFENMK 349 (532)
Q Consensus 330 ~~~~~~~~~~~a~~~~~~~~ 349 (532)
-|.-.++...|...++...
T Consensus 196 -~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 196 -PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp -HHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHhCCHHHHHHHHHHHH
Confidence 2444567777766655443
No 267
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=69.53 E-value=39 Score=26.80 Aligned_cols=23 Identities=9% Similarity=0.172 Sum_probs=12.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 009556 117 SLIEALASVGRTLEADAIFQEMV 139 (532)
Q Consensus 117 ~li~~~~~~~~~~~A~~~~~~~~ 139 (532)
.-++.+...|.++.|+-+.+.+.
T Consensus 25 dqik~L~d~~LY~sA~~La~lLl 47 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLL 47 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHH
Confidence 34455555566666555555543
No 268
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=66.35 E-value=45 Score=26.04 Aligned_cols=66 Identities=11% Similarity=0.205 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhh
Q 009556 444 KEALSVYHLMKDIGISPD-LVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSALVVLEQR 513 (532)
Q Consensus 444 ~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~a~~~~~~~ 513 (532)
+++.++|..|...|+--. ...|......+...|++++|.++|+.-++.+-.|-. .|.++......|
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~----rL~~~~~~F~~R 148 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE----FLQQQYRLFQTR 148 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH----HHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH----HHHHHHHHHHHH
Confidence 347788888887766543 446777777888888888888888888888888855 455555554433
No 269
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=65.28 E-value=41 Score=25.38 Aligned_cols=65 Identities=15% Similarity=0.151 Sum_probs=42.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCC
Q 009556 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGR--TLEADAIFQEMVCFGFNP 145 (532)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~--~~~A~~~~~~~~~~g~~~ 145 (532)
.+.+|.-|...|+.++|.+.++++..-. .........+..++-+.+. .+.+..++..+.+.|+-+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~-f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCc-cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 4778999999999999999999986211 1122344444555555432 355777787777666433
No 270
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=65.05 E-value=35 Score=24.32 Aligned_cols=78 Identities=19% Similarity=0.210 Sum_probs=39.0
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009556 232 MWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFT 311 (532)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 311 (532)
..++|..+-+.+...+. ...+--.-+..+...|++++|..+.+.+. .||...|-.+-. .+.|..+++...+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 34555555555544331 11111112234556666666666554432 466666655433 35566666666665
Q ss_pred HHHHCC
Q 009556 312 QMQEQG 317 (532)
Q Consensus 312 ~m~~~~ 317 (532)
++..+|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 665544
No 271
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=63.94 E-value=1e+02 Score=29.26 Aligned_cols=50 Identities=4% Similarity=-0.092 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHHHC-----CCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 009556 126 GRTLEADAIFQEMVCF-----GFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMED 175 (532)
Q Consensus 126 ~~~~~A~~~~~~~~~~-----g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 175 (532)
|+++.|++.+..+.+. ...........++..|...|+++...+.+..+..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 6777887776665532 2233455677778888888888777666655543
No 272
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=63.70 E-value=37 Score=24.21 Aligned_cols=51 Identities=18% Similarity=0.296 Sum_probs=28.3
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 009556 261 TFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQG 317 (532)
Q Consensus 261 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 317 (532)
.+...|++++|..+.+.+. .||...|-.+-. .+.|..+++...+.++..+|
T Consensus 49 SLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 3455666666666554443 456666655433 35566666666555555444
No 273
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=63.48 E-value=62 Score=26.64 Aligned_cols=53 Identities=17% Similarity=0.132 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHCCCCCC-hHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCc
Q 009556 128 TLEADAIFQEMVCFGFNPK-LRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICR 180 (532)
Q Consensus 128 ~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 180 (532)
..++.++|..|...|+.-. ...|......+...|++.+|.++|+.-.+.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4566666666665554332 3345555555555666666666666555544433
No 274
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=59.24 E-value=33 Score=26.83 Aligned_cols=64 Identities=16% Similarity=0.153 Sum_probs=41.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCC
Q 009556 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGR--TLEADAIFQEMVCFGFN 144 (532)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~--~~~A~~~~~~~~~~g~~ 144 (532)
.+.+|.-|...|+.++|.+.++++..-. .....+...+..++-+.++ .+.+..++..+.+.|+-
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 4789999999999999999999986211 1123344444455554322 44567777777766543
No 275
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=58.57 E-value=77 Score=26.90 Aligned_cols=90 Identities=12% Similarity=0.114 Sum_probs=43.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHc--CCCC----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHH
Q 009556 81 NKSIQYCCKLGDIDEAMALLAQMQAL--GFHP----SSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILL 154 (532)
Q Consensus 81 ~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~----~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li 154 (532)
-.-++.+....++++|++++++..+. +.++ +.......+..-.....-.-+..+.+.+.. .++.......+
T Consensus 22 ~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v 98 (235)
T 2d2s_A 22 VEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGT 98 (235)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHH
T ss_pred cHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHH
Confidence 34577788889999999988876543 1221 111122222222222222333333333321 23344444445
Q ss_pred HHHHhcCChhHHHHHHHHH
Q 009556 155 RGFLKKGLLGLGSRLLMVM 173 (532)
Q Consensus 155 ~~~~~~g~~~~A~~~~~~m 173 (532)
..+.+.|+.+.|.++|-+.
T Consensus 99 ~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 99 ENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHCCChhHHHHHHHHH
Confidence 5555555555555555443
No 276
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=58.15 E-value=80 Score=28.12 Aligned_cols=69 Identities=13% Similarity=0.146 Sum_probs=39.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHH
Q 009556 395 FCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGK--YKEALSVYHLMKDIGISPDLVT 464 (532)
Q Consensus 395 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~~ 464 (532)
...++.-|...|+.++|.+.++++......+ ......+..++-+.++ .+...+++..+.+.|+-+....
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~-e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHH-HHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchH-HHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 4567777888889999999888886321111 1223333344443322 3446677777776665544433
No 277
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=58.05 E-value=62 Score=24.91 Aligned_cols=69 Identities=12% Similarity=0.138 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 009556 284 RPDIVTWNSLIRWHCKAGDV---AKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRG 352 (532)
Q Consensus 284 ~p~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 352 (532)
.|+..+--.+..++.++.+. .+++.+++++...+..-.....-.+.-++.+.|+++.|.+..+.+.+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 34555555555566665543 3556666666554322122333344456666777777776666666654
No 278
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=57.42 E-value=79 Score=25.91 Aligned_cols=39 Identities=18% Similarity=0.241 Sum_probs=26.3
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 009556 298 CKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGK 337 (532)
Q Consensus 298 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 337 (532)
.+..+++.|+-++.+|.+.| .|....-..++.+....|.
T Consensus 25 iRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGl 63 (204)
T 2r9g_A 25 IRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGL 63 (204)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGG
T ss_pred HhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccC
Confidence 34578888888888888888 6555555555555555543
No 279
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=56.73 E-value=80 Score=25.79 Aligned_cols=91 Identities=14% Similarity=0.007 Sum_probs=37.3
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009556 180 RNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSII 259 (532)
Q Consensus 180 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 259 (532)
++...-...+.++.+.++.+ +...+..+.. .++..+-...+.++...++.+ +...+..+.+ .++..+-...+
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~ 164 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAA 164 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 34444444444444444432 2222222222 234444444455555444432 2222333322 23444445555
Q ss_pred HHHhccCCHHHHHHHHHHHH
Q 009556 260 DTFGKYGELVEALEVFEKMQ 279 (532)
Q Consensus 260 ~~~~~~g~~~~A~~~~~~m~ 279 (532)
.++.+.+. +++...+..+.
T Consensus 165 ~aL~~~~~-~~~~~~L~~~l 183 (211)
T 3ltm_A 165 DALGEIGG-ERVRAAMEKLA 183 (211)
T ss_dssp HHHHHHCS-HHHHHHHHHHH
T ss_pred HHHHHhCc-hhHHHHHHHHH
Confidence 55555554 33344444433
No 280
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=54.74 E-value=53 Score=23.16 Aligned_cols=63 Identities=5% Similarity=0.055 Sum_probs=37.9
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHH-----hCCCCCCHHHHHHHHHHHHHH
Q 009556 446 ALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQME-----SSGCTPDRKARQILQSALVVL 510 (532)
Q Consensus 446 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~g~~p~~~t~~~l~~a~~~~ 510 (532)
|.++.+++...|+.|+..+..-++..|..-+- .+.++.++.. ..|..|+..+++.+-+-+...
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~l--da~e~VeeWmAFsts~~g~~pT~enL~~FEhEvl~k 95 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYGQ--NEEGMVGELIAFCTSTHKVGLTSEILNSFEHEFLSK 95 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC--CHHHHHHHHHHHHHHHTCSBCCHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence 45566666666777777777777777766553 2444333332 447777777777665544443
No 281
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=54.21 E-value=1.4e+02 Score=27.75 Aligned_cols=165 Identities=12% Similarity=0.030 Sum_probs=84.9
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCC---CHhHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCChHhH--
Q 009556 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALG-FHP---SSISYASLIEALASV-GRTLEADAIFQEMVCFGFNPKLRFY-- 150 (532)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~---~~~~~~~li~~~~~~-~~~~~A~~~~~~~~~~g~~~~~~~~-- 150 (532)
.+...|...|.+.|+.++..+++......= .-+ .......++..+... +..+.-.++..+..+..- .+..+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 345678888999999999988888765321 011 122344556655543 333444444444433210 111122
Q ss_pred ----HHHHHHHHhcCChhHHHHHHHHHHHc--CCC---cCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCcCHHh
Q 009556 151 ----NILLRGFLKKGLLGLGSRLLMVMEDM--GIC---RNQETYEILLDYHVNAGRLDDTWLIINEMRSK--GFQLNSFV 219 (532)
Q Consensus 151 ----~~li~~~~~~g~~~~A~~~~~~m~~~--~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~ 219 (532)
.-++..|...|++.+|.+++..+.+. ... --...+..-+..|...+++.++...+...... .+.+++..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 24667777777777777777766542 111 11223445555666667777766666655322 12122222
Q ss_pred HHHH----HHHHH-cCCChHHHHHHHHHH
Q 009556 220 YGKV----IGLYR-DNGMWKKAVGIVEEI 243 (532)
Q Consensus 220 ~~~l----l~~~~-~~~~~~~a~~~~~~~ 243 (532)
...+ ...+. ..+++..|...|-+.
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 1111 12334 566666666655544
No 282
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=53.17 E-value=75 Score=24.42 Aligned_cols=64 Identities=9% Similarity=0.060 Sum_probs=45.6
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhh
Q 009556 451 HLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSALVVLEQRRC 515 (532)
Q Consensus 451 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~a~~~~~~~~~ 515 (532)
+.+.+.|++++..= ..++..+...+..-.|.++++.+.+.+...+..|..-.++.|...|--..
T Consensus 11 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 74 (145)
T 2fe3_A 11 ETLKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKE 74 (145)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEE
Confidence 34567787776653 34455565667777899999999888777788888888888877765433
No 283
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=53.08 E-value=16 Score=31.71 Aligned_cols=58 Identities=16% Similarity=0.111 Sum_probs=28.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHh---HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 009556 81 NKSIQYCCKLGDIDEAMALLAQMQALGFHPSSI---SYASLIEALASVGRTLEADAIFQEMVCFGFNPK 146 (532)
Q Consensus 81 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~---~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~ 146 (532)
++.+...++.|+++....+++ .|..++.. .-.+.+...+..|+.+- ++.+.+.|..++
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~~g~t~L~~A~~~g~~~~----v~~Ll~~g~~~~ 66 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLE----GGANVNFQEEEGGWTPLHNAVQMSREDI----VELLLRHGADPV 66 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTTCCCHHHHHHHTTCHHH----HHHHHHTTCCTT
T ss_pred chHHHHHHHcCCHHHHHHHHH----cCCCcccccCCCCCcHHHHHHHcCCHHH----HHHHHHcCCCCc
Confidence 455666677888765555543 44333221 11233444556666543 344445554443
No 284
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=52.14 E-value=86 Score=24.80 Aligned_cols=55 Identities=18% Similarity=0.366 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCHH
Q 009556 444 KEALSVYHLMKDIGISPD-LVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRK 498 (532)
Q Consensus 444 ~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 498 (532)
+++.++|..|...|+--. ...|......+...|++.+|.++|+.-++.+-.|-..
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 336667787877766543 3456677777777888888888888888887777663
No 285
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=51.96 E-value=2e+02 Score=28.91 Aligned_cols=45 Identities=27% Similarity=0.325 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh
Q 009556 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALAS 124 (532)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 124 (532)
..| .+|-.|.|+|++++|.++.++.... +..-...+...+..++.
T Consensus 154 p~W-a~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 154 PIW-ALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp EHH-HHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC--
T ss_pred ccH-HHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHh
Confidence 477 6888889999999999999776542 11112356666666664
No 286
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=51.81 E-value=69 Score=24.65 Aligned_cols=63 Identities=8% Similarity=-0.020 Sum_probs=44.6
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhh
Q 009556 451 HLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSALVVLEQRRC 515 (532)
Q Consensus 451 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~a~~~~~~~~~ 515 (532)
+.+.+.|++++..= ..++..+...+ .-.|.++++.+.+.+...+..|..-.++.+...|--+.
T Consensus 8 ~~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~ 70 (145)
T 3eyy_A 8 SDLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVSH 70 (145)
T ss_dssp HHHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEE
Confidence 34566788777652 23445555556 67899999999888877888888888888887775433
No 287
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=51.13 E-value=78 Score=23.98 Aligned_cols=63 Identities=10% Similarity=0.132 Sum_probs=45.0
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcC-CcChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhh
Q 009556 452 LMKDIGISPDLVTYSTLMKAFIRAK-KFHKVPEIYKQMESSGCTPDRKARQILQSALVVLEQRRC 515 (532)
Q Consensus 452 ~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~t~~~l~~a~~~~~~~~~ 515 (532)
.+.+.|++++..= ..++..+...+ ..-.|.++++.+.+.+...+..|..-.++.+...+--..
T Consensus 8 ~l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 71 (136)
T 1mzb_A 8 ELRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVR 71 (136)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 3566787777653 34455565565 677899999999988878888888888888887776443
No 288
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=50.98 E-value=1e+02 Score=25.22 Aligned_cols=38 Identities=13% Similarity=0.092 Sum_probs=23.2
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 009556 299 KAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELG 336 (532)
Q Consensus 299 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 336 (532)
+..+++.|+-++.+|++.|-.|....-..++.+....|
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 44677777777777777776555544444554544443
No 289
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=49.96 E-value=64 Score=27.04 Aligned_cols=66 Identities=17% Similarity=0.293 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhh
Q 009556 444 KEALSVYHLMKDIGISPD-LVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSALVVLEQR 513 (532)
Q Consensus 444 ~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~a~~~~~~~ 513 (532)
+++.++|..|...|+--. ...|......+...|++++|.++|+.-++.+-.|-. .|.+++..+..|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~----rL~~~~~~F~~R 197 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL----RFQQKYQQFTHR 197 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH----HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH----HHHHHHHHHHHH
Confidence 567778888887766543 446777777888888888888888888888888855 355555555444
No 290
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=49.95 E-value=67 Score=22.90 Aligned_cols=77 Identities=25% Similarity=0.174 Sum_probs=35.2
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHH
Q 009556 92 DIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLM 171 (532)
Q Consensus 92 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 171 (532)
..++|..+-+.+...+. ....--.-+..+...|++++|..+.+... .||...|-+|-. .+.|-.+.+..-+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 34455555555444331 11111122334455666666655544433 455555544432 24555555555554
Q ss_pred HHHHc
Q 009556 172 VMEDM 176 (532)
Q Consensus 172 ~m~~~ 176 (532)
++...
T Consensus 93 ~la~s 97 (115)
T 2uwj_G 93 GLGGS 97 (115)
T ss_dssp HHHTC
T ss_pred HHHhC
Confidence 44443
No 291
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=49.91 E-value=41 Score=28.16 Aligned_cols=86 Identities=10% Similarity=-0.027 Sum_probs=45.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHhH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHh--HHHHHHHHH
Q 009556 83 SIQYCCKLGDIDEAMALLAQMQALGFHPSSIS--YASLIEALASVGRTLEADAIFQEMVCFGFNPKLRF--YNILLRGFL 158 (532)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~--~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~--~~~li~~~~ 158 (532)
.+...++.|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+ +++.+.+.|..++... -.+.+...+
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~ 87 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLAC 87 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHH
Confidence 45556778998888888887777664444321 112344445566654 3444445554443221 122334444
Q ss_pred hcCChhHHHHHHHH
Q 009556 159 KKGLLGLGSRLLMV 172 (532)
Q Consensus 159 ~~g~~~~A~~~~~~ 172 (532)
..|+.+....+++.
T Consensus 88 ~~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 88 EHRSPTCLRALLDS 101 (241)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHc
Confidence 56666555544443
No 292
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=49.86 E-value=81 Score=24.44 Aligned_cols=64 Identities=9% Similarity=0.019 Sum_probs=44.4
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhh
Q 009556 451 HLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSALVVLEQRRC 515 (532)
Q Consensus 451 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~a~~~~~~~~~ 515 (532)
+.+.+.|++++.. =..++..+...+..-.|.++++.+.+.+...+..|..-.++.+...|--..
T Consensus 16 ~~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 79 (150)
T 2xig_A 16 MSIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISV 79 (150)
T ss_dssp HHHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEE
Confidence 3456677776554 234556666667778899999999888777888888888888877765443
No 293
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=49.34 E-value=1.2e+02 Score=27.10 Aligned_cols=128 Identities=11% Similarity=0.050 Sum_probs=0.0
Q ss_pred HHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc---CCH
Q 009556 367 YGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVA---GKY 443 (532)
Q Consensus 367 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~ 443 (532)
+...|++++|...|+.+. +...+.......+.+++.+++....+ +....-+..-.+. .+.
T Consensus 124 ~~t~gKf~eAl~~Fr~iL----------~~i~l~~v~~~~e~~e~~eli~icrE-------Yilal~iEl~Rr~l~~~~~ 186 (325)
T 3mv2_A 124 NFKLNKPDIAIECFREAI----------YRITLLMVDDAEDEKLAHKILETARE-------YILGLSIELERRSLKEGNT 186 (325)
T ss_dssp HHHTTCHHHHHHHHHHHH----------HHHHTCCBCSSHHHHHHHHHHHHHHH-------HHHHHHHHHHHHTCCTTCH
T ss_pred HHhcCCHHHHHHHHHHHH----------HHhheeeeccHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhcCcccH
Q ss_pred HHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCcChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhh
Q 009556 444 KEALSVYHLMKDIGISPDLV--TYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSALVVLEQR 513 (532)
Q Consensus 444 ~~A~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~a~~~~~~~ 513 (532)
....++---+..-.++|... +...-+..+.+.+++..|..+-+++++ +.|+.......-+.+...++.
T Consensus 187 kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLe--l~p~~~~a~qArkil~~ce~~ 256 (325)
T 3mv2_A 187 VRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLK--IISSGPRAEQARKIKNKADSM 256 (325)
T ss_dssp HHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCSSHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhcC
No 294
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=48.75 E-value=71 Score=22.82 Aligned_cols=77 Identities=16% Similarity=0.056 Sum_probs=35.9
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHHHHH
Q 009556 92 DIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLM 171 (532)
Q Consensus 92 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 171 (532)
..++|..+-+.+...+. ....--.-+..+...|++++|..+.+... .||...|-+|-. .+.|-.+.+..-+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 34555555555544331 11111222334555666666665554433 455555554432 24455555555444
Q ss_pred HHHHc
Q 009556 172 VMEDM 176 (532)
Q Consensus 172 ~m~~~ 176 (532)
++...
T Consensus 94 ~la~s 98 (116)
T 2p58_C 94 RLARS 98 (116)
T ss_dssp HHTTC
T ss_pred HHHhC
Confidence 44443
No 295
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=48.74 E-value=38 Score=29.21 Aligned_cols=88 Identities=13% Similarity=-0.000 Sum_probs=39.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH---hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHH--HHHHHHHH
Q 009556 117 SLIEALASVGRTLEADAIFQEMVCFGFNPKLR---FYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQE--TYEILLDY 191 (532)
Q Consensus 117 ~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~li~~ 191 (532)
..+...++.|+.+....++ +.|..++.. .-.+.+...++.|+.+-. +.+.+.|..++.. .-.+.+..
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~ 78 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWTPLHNAVQMSREDIV----ELLLRHGADPVLRKKNGATPFLL 78 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTTCCCHHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTCCCHHHH
T ss_pred hHHHHHHHcCCHHHHHHHH----HcCCCcccccCCCCCcHHHHHHHcCCHHHH----HHHHHcCCCCcccCCCCCCHHHH
Confidence 3445556677766554444 444333321 112344555566765443 3444445443321 11123333
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCcC
Q 009556 192 HVNAGRLDDTWLIINEMRSKGFQLN 216 (532)
Q Consensus 192 ~~~~~~~~~a~~~~~~m~~~~~~~~ 216 (532)
.+..|+.+ +++.+.+.|..++
T Consensus 79 A~~~~~~~----~v~~Ll~~g~~~~ 99 (285)
T 1wdy_A 79 AAIAGSVK----LLKLFLSKGADVN 99 (285)
T ss_dssp HHHHTCHH----HHHHHHHTTCCTT
T ss_pred HHHcCCHH----HHHHHHHcCCCCC
Confidence 44455544 3444445555443
No 296
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=48.00 E-value=1.4e+02 Score=26.53 Aligned_cols=69 Identities=16% Similarity=0.178 Sum_probs=44.5
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC--HHHHHHHHHHHHhCCCCCCHHH
Q 009556 220 YGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGE--LVEALEVFEKMQQESIRPDIVT 289 (532)
Q Consensus 220 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~~ 289 (532)
...++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+....++..+.+.|+-+....
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 456778888889999999988888532211 24455566666665443 4556788888877665544333
No 297
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=46.95 E-value=1.8e+02 Score=26.97 Aligned_cols=27 Identities=11% Similarity=0.020 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009556 113 ISYASLIEALASVGRTLEADAIFQEMV 139 (532)
Q Consensus 113 ~~~~~li~~~~~~~~~~~A~~~~~~~~ 139 (532)
.+...+...|.+.|+.++..+++....
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~ 46 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTR 46 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445566677777777777777666554
No 298
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=46.34 E-value=1.4e+02 Score=25.38 Aligned_cols=89 Identities=9% Similarity=-0.014 Sum_probs=45.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC--CCCC----ChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 009556 118 LIEALASVGRTLEADAIFQEMVCF--GFNP----KLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDY 191 (532)
Q Consensus 118 li~~~~~~~~~~~A~~~~~~~~~~--g~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 191 (532)
-+..+....++++|.++.++..+. +.++ ........+..-.....-.-+..+.+.+.. ..+.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 467888889999999998877642 2121 111122222222222222333333444422 2344445555566
Q ss_pred HHhcCChHHHHHHHHHHH
Q 009556 192 HVNAGRLDDTWLIINEMR 209 (532)
Q Consensus 192 ~~~~~~~~~a~~~~~~m~ 209 (532)
+.+.|+.++|.++|-+..
T Consensus 101 L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHH
Confidence 666666666666665543
No 299
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=45.66 E-value=1.3e+02 Score=24.90 Aligned_cols=56 Identities=20% Similarity=0.237 Sum_probs=32.0
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-----HHHHHHHHHHHHhcCCC
Q 009556 299 KAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGK-----WDVIKKNFENMKDRGHG 354 (532)
Q Consensus 299 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~ 354 (532)
+..+++.|+-++.+|++.|-.|....-..++.+....|. ...|...++.....|.+
T Consensus 47 RGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 47 RGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 446778888888888877766655555555555554443 22334444444444543
No 300
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=45.16 E-value=41 Score=21.71 Aligned_cols=48 Identities=13% Similarity=0.077 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCC
Q 009556 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGR 127 (532)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 127 (532)
.++.++..+++..-.++++..++++.+.| ..+...|..-.+.+++..-
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaReQF 51 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQQF 51 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHH
Confidence 35677777887777888888888888887 5677777777777766533
No 301
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=44.81 E-value=83 Score=24.36 Aligned_cols=63 Identities=13% Similarity=0.160 Sum_probs=44.0
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcC-CcChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhh
Q 009556 451 HLMKDIGISPDLVTYSTLMKAFIRAK-KFHKVPEIYKQMESSGCTPDRKARQILQSALVVLEQRR 514 (532)
Q Consensus 451 ~~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~t~~~l~~a~~~~~~~~ 514 (532)
+.+.+.|++++..=. .++..+...+ ..-.|.++++.+.+.+...+..|..-.++.|...+--.
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 345677777776532 3445555555 66789999999988877778888888888887776543
No 302
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=43.26 E-value=1.3e+02 Score=24.23 Aligned_cols=17 Identities=29% Similarity=0.468 Sum_probs=8.0
Q ss_pred CHHHHHHHHHHHhccCC
Q 009556 251 DRQIYNSIIDTFGKYGE 267 (532)
Q Consensus 251 ~~~~~~~li~~~~~~g~ 267 (532)
+..+-...+.++.+.|+
T Consensus 151 ~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 151 DGWVRQSAADALGEIGG 167 (201)
T ss_dssp SHHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 44444444444544444
No 303
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=42.71 E-value=1.1e+02 Score=23.74 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=10.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHH
Q 009556 152 ILLRGFLKKGLLGLGSRLLMVM 173 (532)
Q Consensus 152 ~li~~~~~~g~~~~A~~~~~~m 173 (532)
.++.-|...|+.++|.+.++++
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHh
Confidence 3444444455555555555544
No 304
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=41.55 E-value=1.4e+02 Score=24.22 Aligned_cols=110 Identities=13% Similarity=0.023 Sum_probs=57.6
Q ss_pred cCHHhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 009556 215 LNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLI 294 (532)
Q Consensus 215 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 294 (532)
++..+-...+.++.+.++.+. ...+..+.+ .++..+-...+.++.+.|+.+ +...+..+.+. ++...-...+
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~d---~~~~vr~~a~ 164 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDERA-VEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALKD---EDGWVRQSAA 164 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTTC---SSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHH-HHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHcC---CCHHHHHHHH
Confidence 355555566666666665432 333333332 346666666666666666533 34444444432 4555555666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 009556 295 RWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELG 336 (532)
Q Consensus 295 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 336 (532)
.++.+.+. .++...+..+.+. ++..+-...+.++.+.+
T Consensus 165 ~aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 165 DALGEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLETHK 202 (211)
T ss_dssp HHHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHHC--
T ss_pred HHHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHHhcC
Confidence 66666665 4455555555542 35555555555555444
No 305
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=41.06 E-value=1.3e+02 Score=23.50 Aligned_cols=51 Identities=10% Similarity=0.046 Sum_probs=30.2
Q ss_pred HHHHHHHHHHcCCCcC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcC
Q 009556 166 GSRLLMVMEDMGICRN-QETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLN 216 (532)
Q Consensus 166 A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 216 (532)
+.++|..|...|+-.. ..-|......+-..|++++|.++|+.-++.+-.|-
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 5666666666554332 33556666666666666666666666666655553
No 306
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=40.71 E-value=80 Score=21.14 Aligned_cols=63 Identities=10% Similarity=0.116 Sum_probs=44.5
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcC-CcChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhh
Q 009556 451 HLMKDIGISPDLVTYSTLMKAFIRAK-KFHKVPEIYKQMESSGCTPDRKARQILQSALVVLEQRR 514 (532)
Q Consensus 451 ~~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~t~~~l~~a~~~~~~~~ 514 (532)
+.+.+.|+..+..-. .++..+...+ ..-.+.++++.+.+.+...+..|..-.++.|...+--.
T Consensus 6 ~~l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~ 69 (83)
T 2fu4_A 6 TALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (83)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeE
Confidence 345677877776543 4555555554 56778899999988877778888888888887776543
No 307
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=39.85 E-value=20 Score=30.83 Aligned_cols=57 Identities=18% Similarity=0.075 Sum_probs=34.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHhH-------HHHHHHHHH--hcCCHHHHHHHHHHHH
Q 009556 83 SIQYCCKLGDIDEAMALLAQMQALGFHPSSIS-------YASLIEALA--SVGRTLEADAIFQEMV 139 (532)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-------~~~li~~~~--~~~~~~~A~~~~~~~~ 139 (532)
.+...++.|+.+....+++.+.+.|...+... .+.|..+.. +.|+.+-+..+++.-.
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 34455677888888888887777765555332 233443332 5577666666666543
No 308
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=38.93 E-value=1.2e+02 Score=23.49 Aligned_cols=46 Identities=11% Similarity=0.084 Sum_probs=21.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCC
Q 009556 186 EILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNG 231 (532)
Q Consensus 186 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 231 (532)
..++..+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 30 ~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 30 EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3344444444444555555555555444444444444444444433
No 309
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=37.87 E-value=1.4e+02 Score=23.51 Aligned_cols=60 Identities=10% Similarity=0.082 Sum_probs=42.5
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCcChHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHHhhh
Q 009556 453 MKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESS--GCTPDRKARQILQSALVVLEQR 513 (532)
Q Consensus 453 m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~t~~~l~~a~~~~~~~ 513 (532)
+.+.|++++.. =..++..+...+..-.|.++++.+.+. +...+..|..--++.+...|--
T Consensus 24 L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 24 LRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 45667777654 344566666777778888888888877 6677777777777777776643
No 310
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=37.84 E-value=2.9e+02 Score=26.71 Aligned_cols=64 Identities=16% Similarity=0.068 Sum_probs=34.3
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCH--hHHH-HHHHHHHhcCCHHHHHHHHHHHHH
Q 009556 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGF-HPSS--ISYA-SLIEALASVGRTLEADAIFQEMVC 140 (532)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~--~~~~-~li~~~~~~~~~~~A~~~~~~~~~ 140 (532)
...+|.+++.|...+.++.|..+..+..--.. .+|. ..|. .+...+.-.+++.+|.+.+....+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34566777777777777777777766541100 0111 1121 234455556667777666666554
No 311
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=37.48 E-value=1.3e+02 Score=22.58 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=11.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH
Q 009556 152 ILLRGFLKKGLLGLGSRLLMVME 174 (532)
Q Consensus 152 ~li~~~~~~g~~~~A~~~~~~m~ 174 (532)
.++.-|...|+.++|.+.++++.
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHhC
Confidence 34444555555555555555543
No 312
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=37.30 E-value=2.7e+02 Score=26.28 Aligned_cols=38 Identities=13% Similarity=0.096 Sum_probs=26.0
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 009556 299 KAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELG 336 (532)
Q Consensus 299 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 336 (532)
+.++.+.|+.++.+|.+.|..|....-..+..+....|
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig 304 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVG 304 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Confidence 45788999999999998887665544444444544444
No 313
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=36.09 E-value=35 Score=28.48 Aligned_cols=48 Identities=15% Similarity=0.112 Sum_probs=23.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHh--HHHHHHHHHHhcCCHHHHHHHH
Q 009556 84 IQYCCKLGDIDEAMALLAQMQALGFHPSSI--SYASLIEALASVGRTLEADAIF 135 (532)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~li~~~~~~~~~~~A~~~~ 135 (532)
+...++.|+++....+++ .|..++.. .-.+.+...+..|+.+-+..++
T Consensus 13 l~~A~~~g~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 62 (240)
T 3eu9_A 13 IVKATQYGIYERCRELVE----AGYDVRQPDKENVTLLHWAAINNRIDLVKYYI 62 (240)
T ss_dssp HHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHH----cCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHH
Confidence 334567788766555544 44333221 1123445556667765444333
No 314
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=35.96 E-value=61 Score=29.39 Aligned_cols=23 Identities=30% Similarity=0.306 Sum_probs=11.5
Q ss_pred HHHHHHHHcCCChHHHHHHHHHH
Q 009556 221 GKVIGLYRDNGMWKKAVGIVEEI 243 (532)
Q Consensus 221 ~~ll~~~~~~~~~~~a~~~~~~~ 243 (532)
..++.-|...|+.++|.+.++++
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el 37 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQEL 37 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHc
Confidence 34444555555555555554444
No 315
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=35.35 E-value=1.2e+02 Score=21.48 Aligned_cols=30 Identities=10% Similarity=0.170 Sum_probs=14.9
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHhcC
Q 009556 412 VKVLQLMEPEGIEPNLVMLNVLINAFGVAG 441 (532)
Q Consensus 412 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 441 (532)
.++.++....|+.|+..+...++..|...+
T Consensus 29 e~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 29 QQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 334444444455555555555555555444
No 316
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=34.99 E-value=1.2e+02 Score=23.24 Aligned_cols=43 Identities=16% Similarity=0.172 Sum_probs=18.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcC
Q 009556 188 LLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDN 230 (532)
Q Consensus 188 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 230 (532)
++..+...+..-.|.++++.+.+.+...+..|....++.+...
T Consensus 27 Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~ 69 (145)
T 2fe3_A 27 ILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRES 69 (145)
T ss_dssp HHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHC
Confidence 3333333344444555555554444444444444444444433
No 317
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=34.65 E-value=2.7e+02 Score=25.44 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=17.2
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHH
Q 009556 219 VYGKVIGLYRDNGMWKKAVGIVEEIR 244 (532)
Q Consensus 219 ~~~~ll~~~~~~~~~~~a~~~~~~~~ 244 (532)
....++.-|...|+.++|.+.++++.
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~ 39 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMR 39 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 34556666777777777777776664
No 318
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=33.69 E-value=1.5e+02 Score=23.28 Aligned_cols=53 Identities=6% Similarity=-0.025 Sum_probs=37.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHH-HH-----HhcCCcChHHHHHHHHHh
Q 009556 438 GVAGKYKEALSVYHLMKDIGISP--DLVTYSTLMK-AF-----IRAKKFHKVPEIYKQMES 490 (532)
Q Consensus 438 ~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~-~~-----~~~g~~~~a~~~~~~m~~ 490 (532)
...|++-+|-++|+..=.....+ +...|..||. .. .+.|+...|..++++...
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34488888988888886554444 4556777777 22 357888889888888865
No 319
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=31.82 E-value=1.6e+02 Score=23.15 Aligned_cols=53 Identities=9% Similarity=0.004 Sum_probs=38.4
Q ss_pred HHcCChHHHHHHHHHHHHcCCCC--CHhHHHHHHH-H-----HHhcCCHHHHHHHHHHHHH
Q 009556 88 CKLGDIDEAMALLAQMQALGFHP--SSISYASLIE-A-----LASVGRTLEADAIFQEMVC 140 (532)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~-~-----~~~~~~~~~A~~~~~~~~~ 140 (532)
...|++-+|-++++..-...-.+ ....|..||+ . ..+.|+..-|..++.+...
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45599999999999987664344 4556777777 2 2356888888888888764
No 320
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=31.76 E-value=83 Score=27.38 Aligned_cols=45 Identities=7% Similarity=-0.194 Sum_probs=19.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHhcCChhHHHH
Q 009556 120 EALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSR 168 (532)
Q Consensus 120 ~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 168 (532)
...+..|+.+-+..+++ .|..++...-.+.+...+..|+.+-+..
T Consensus 36 ~~A~~~g~~~~v~~Ll~----~g~~~~~~~g~t~L~~A~~~g~~~~v~~ 80 (285)
T 3kea_A 36 YYAIADNNVRLVCTLLN----AGALKNLLENEFPLHQAATLEDTKIVKI 80 (285)
T ss_dssp HHHHHTTCHHHHHHHHH----TTGGGSCCTTCCHHHHHTTSSSCHHHHH
T ss_pred HHHHHcCCHHHHHHHHh----CCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 33345566554444333 3333332222233444455566544433
No 321
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=31.53 E-value=1.5e+02 Score=26.71 Aligned_cols=63 Identities=13% Similarity=0.221 Sum_probs=36.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCC
Q 009556 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVG-RTLEADAIFQEMVCFGF 143 (532)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~~~~~g~ 143 (532)
.+.++.-|...|+.++|.+.++++..... ........+..++-+.. ..+.+..++..+.+.|+
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~-~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~ 77 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSL-LFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGH 77 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGG-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCccc-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCC
Confidence 47789999999999999999998862211 11122222222222211 23445566777766553
No 322
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=31.24 E-value=58 Score=26.23 Aligned_cols=81 Identities=9% Similarity=-0.040 Sum_probs=34.8
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHh--HHHHHHHHHhcCC
Q 009556 85 QYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRF--YNILLRGFLKKGL 162 (532)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~ 162 (532)
...+..|+.+....++..-...--..+..-++. +...+..|+.+ +.+.+.+.|..++... ..+.+...+..|+
T Consensus 10 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 84 (201)
T 3hra_A 10 LEAANQRDTKKVKEILQDTTYQVDEVDTEGNTP-LNIAVHNNDIE----IAKALIDRGADINLQNSISDSPYLYAGAQGR 84 (201)
T ss_dssp HHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCH-HHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCH-HHHHHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence 344567777777666653220000112222223 33334556644 3344444554443221 1122333445566
Q ss_pred hhHHHHHH
Q 009556 163 LGLGSRLL 170 (532)
Q Consensus 163 ~~~A~~~~ 170 (532)
.+-+..++
T Consensus 85 ~~~~~~Ll 92 (201)
T 3hra_A 85 TEILAYML 92 (201)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55444444
No 323
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=31.08 E-value=1.1e+02 Score=23.05 Aligned_cols=42 Identities=12% Similarity=0.079 Sum_probs=18.6
Q ss_pred HHHHHHhcC-ChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHc
Q 009556 188 LLDYHVNAG-RLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRD 229 (532)
Q Consensus 188 li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 229 (532)
++..+...+ ..-.|.++++.+.+.+...+..|...-++.+..
T Consensus 23 Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e 65 (136)
T 1mzb_A 23 ILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEA 65 (136)
T ss_dssp HHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 333343333 344455555555555444444444444444433
No 324
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=30.99 E-value=32 Score=28.73 Aligned_cols=45 Identities=11% Similarity=0.025 Sum_probs=21.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChH--hHHHHHHHHHhcCChhHHHHHH
Q 009556 122 LASVGRTLEADAIFQEMVCFGFNPKLR--FYNILLRGFLKKGLLGLGSRLL 170 (532)
Q Consensus 122 ~~~~~~~~~A~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~ 170 (532)
.++.|+.+....++ +.|..++.. ...+.+...++.|+.+-+..++
T Consensus 16 A~~~g~~~~~~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 62 (240)
T 3eu9_A 16 ATQYGIYERCRELV----EAGYDVRQPDKENVTLLHWAAINNRIDLVKYYI 62 (240)
T ss_dssp HHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHcCChHHHHHHH----HcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHH
Confidence 44566665544444 344333221 1223445556667665444333
No 325
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=30.92 E-value=36 Score=21.50 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=18.3
Q ss_pred cCChHHHHHHHHHHHHcC-CCCCHh
Q 009556 90 LGDIDEAMALLAQMQALG-FHPSSI 113 (532)
Q Consensus 90 ~g~~~~A~~~~~~m~~~~-~~~~~~ 113 (532)
.-|++.|+..|.++...| ++|+.+
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eAF 57 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVAF 57 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHh
Confidence 458999999999998765 565543
No 326
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=29.27 E-value=2.2e+02 Score=22.75 Aligned_cols=78 Identities=14% Similarity=0.069 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009556 251 DRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIIS 330 (532)
Q Consensus 251 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 330 (532)
+..+-...+.++.+.++. ++...+..+... ++...-...+.++.+.|. .++...+..+... ++..+-...+.
T Consensus 120 ~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~d---~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~ 191 (201)
T 3ltj_A 120 DWFVRIAAAFALGEIGDE-RAVEPLIKALKD---EDGWVRQSAADALGEIGG-ERVRAAMEKLAET---GTGFARKVAVN 191 (201)
T ss_dssp SHHHHHHHHHHHHHHTCG-GGHHHHHHHTTC---SSHHHHHHHHHHHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCH-HHHHHHHHHHcC---CCHHHHHHHHHHHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHH
Confidence 444444444555544442 233333333332 355555566666666665 3455555555542 35555555555
Q ss_pred HHHccC
Q 009556 331 CLGELG 336 (532)
Q Consensus 331 ~~~~~~ 336 (532)
++.+..
T Consensus 192 aL~~l~ 197 (201)
T 3ltj_A 192 YLETHK 197 (201)
T ss_dssp HHHHCC
T ss_pred HHHHHH
Confidence 555443
No 327
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=29.06 E-value=2.4e+02 Score=23.15 Aligned_cols=20 Identities=20% Similarity=0.106 Sum_probs=9.5
Q ss_pred HhccCCHHHHHHHHHHHHhC
Q 009556 262 FGKYGELVEALEVFEKMQQE 281 (532)
Q Consensus 262 ~~~~g~~~~A~~~~~~m~~~ 281 (532)
.++.|+.+....+++.+.+.
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~ 35 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQG 35 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHhc
Confidence 34445555555555444433
No 328
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=27.86 E-value=2.2e+02 Score=22.42 Aligned_cols=51 Identities=10% Similarity=-0.011 Sum_probs=27.8
Q ss_pred HHHHHHHHHHcCCCcC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcC
Q 009556 166 GSRLLMVMEDMGICRN-QETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLN 216 (532)
Q Consensus 166 A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 216 (532)
+..+|..|...|+-.. ...|......+-..|++.+|.++|..-++.+..|-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 4555556655554322 33455555555556666666666666655555543
No 329
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=27.73 E-value=1.2e+02 Score=23.35 Aligned_cols=35 Identities=11% Similarity=0.138 Sum_probs=16.4
Q ss_pred ChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCC
Q 009556 197 RLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNG 231 (532)
Q Consensus 197 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 231 (532)
..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 32 ~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 32 QHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp SSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 34445555555555444444444444444444433
No 330
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=27.28 E-value=1.2e+02 Score=22.60 Aligned_cols=45 Identities=7% Similarity=0.045 Sum_probs=29.2
Q ss_pred HHHHHHhcCCcChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhh
Q 009556 468 LMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSALVVLEQ 512 (532)
Q Consensus 468 l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~a~~~~~~ 512 (532)
++..+...+..-.|.++++.+.+.+...+..|..-.++.+...+-
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 444555555566777777777776666667666666666666554
No 331
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=26.99 E-value=1.1e+02 Score=26.64 Aligned_cols=143 Identities=10% Similarity=-0.007 Sum_probs=64.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHh--HHHHHHHHHhc
Q 009556 83 SIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRF--YNILLRGFLKK 160 (532)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~--~~~li~~~~~~ 160 (532)
.+...++.|+.+-+..+++. |..++...-.+.+...+..|+.+-+. .+.+.|..++... -.+.+...+..
T Consensus 34 ~L~~A~~~g~~~~v~~Ll~~----g~~~~~~~g~t~L~~A~~~g~~~~v~----~Ll~~ga~~~~~d~~g~t~L~~A~~~ 105 (285)
T 3kea_A 34 ASYYAIADNNVRLVCTLLNA----GALKNLLENEFPLHQAATLEDTKIVK----ILLFSGLDDSQFDDKGNTALYYAVDS 105 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHT----TGGGSCCTTCCHHHHHTTSSSCHHHH----HHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHhC----CCCCCCCCCCCHHHHHHHcCCHHHHH----HHHHCCCCCCCcCCCCCcHHHHHHHc
Confidence 34555677887766555544 43333221123444555667765444 4445565443221 11233444556
Q ss_pred CChhHHHHHHHHHHHcCCCcCHH---HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHH-hHHHHHHHHHcCCChHHH
Q 009556 161 GLLGLGSRLLMVMEDMGICRNQE---TYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSF-VYGKVIGLYRDNGMWKKA 236 (532)
Q Consensus 161 g~~~~A~~~~~~m~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a 236 (532)
|+.+-+..+++ .|..++.. .+.+.+...+..|+.+- .+.+.+.|..+... .-.+.+...+..|..+-+
T Consensus 106 g~~~~v~~Ll~----~ga~~~~~~~~g~~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v 177 (285)
T 3kea_A 106 GNMQTVKLFVK----KNWRLMFYGKTGWKTSFYHAVMLNDVSI----VSYFLSEIPSTFDLAILLSCIHITIKNGHVDMM 177 (285)
T ss_dssp TCHHHHHHHHH----HCGGGGGCSSSGGGSHHHHHHHTTCHHH----HHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHh----cCCCCCccCCCCCCCHHHHHHHcCCHHH----HHHHHhCCCccccccCCccHHHHHHHcChHHHH
Confidence 66554444443 34333322 22344455555665543 33334444333111 223333444455555544
Q ss_pred HHHHH
Q 009556 237 VGIVE 241 (532)
Q Consensus 237 ~~~~~ 241 (532)
.-+++
T Consensus 178 ~~Ll~ 182 (285)
T 3kea_A 178 ILLLD 182 (285)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 332
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=26.98 E-value=55 Score=20.64 Aligned_cols=29 Identities=24% Similarity=0.171 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 009556 94 DEAMALLAQMQALGFHPSSISYASLIEAL 122 (532)
Q Consensus 94 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 122 (532)
++|.+.|.+|.+..-.++..+|...++.+
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 45666666655544344445666666655
No 333
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=26.52 E-value=1.2e+02 Score=23.04 Aligned_cols=47 Identities=11% Similarity=0.096 Sum_probs=33.2
Q ss_pred HHHHHHHhcCCcChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhh
Q 009556 467 TLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSALVVLEQR 513 (532)
Q Consensus 467 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~a~~~~~~~ 513 (532)
.++..+...+..-.|.++++.+.+.+...+..|..-.++.+...+--
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 44555556666677888888888777777777777777777776653
No 334
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=26.33 E-value=1.1e+02 Score=18.38 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=14.2
Q ss_pred CChHHHHHHHHHHHHcCCCCC
Q 009556 91 GDIDEAMALLAQMQALGFHPS 111 (532)
Q Consensus 91 g~~~~A~~~~~~m~~~~~~~~ 111 (532)
+|...|+++++.+.+.|--|+
T Consensus 7 RDv~RaiELle~lq~sgevp~ 27 (53)
T 1zl8_A 7 RDVQRILELMEHVQKTGEVNN 27 (53)
T ss_dssp HHHHHHHHHHHHHGGGSSSTH
T ss_pred HHHHHHHHHHHHHHHcCCCCc
Confidence 466778888888877764343
No 335
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=26.19 E-value=1.1e+02 Score=23.51 Aligned_cols=33 Identities=15% Similarity=0.087 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcC
Q 009556 198 LDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDN 230 (532)
Q Consensus 198 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 230 (532)
.-.|.++++.+.+.+...+..|...-+..+...
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~ 65 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEEL 65 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHC
Confidence 344555555555544444444444444444333
No 336
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=25.44 E-value=45 Score=26.47 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=22.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH
Q 009556 80 YNKSIQYCCKLGDIDEAMALLAQMQA 105 (532)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~ 105 (532)
...+|+-|...|+.++|...++++..
T Consensus 13 ~~~ii~EYf~~~D~~Ea~~~l~eL~~ 38 (165)
T 2rg8_A 13 LTPIIQEYFEHGDTNEVAEMLRDLNL 38 (165)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC
Confidence 46789999999999999999999873
No 337
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=25.39 E-value=2.6e+02 Score=22.27 Aligned_cols=92 Identities=12% Similarity=0.113 Sum_probs=47.0
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHh--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHh---HHHHHHHHHh-
Q 009556 86 YCCKLGDIDEAMALLAQMQALGFHPSSI--SYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRF---YNILLRGFLK- 159 (532)
Q Consensus 86 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~---~~~li~~~~~- 159 (532)
..++.|+++....++.. +.. ... .-.+.+...+..|+.+.-.++.+.+.+.|..++... .+.|..++..
T Consensus 12 ~Aa~~g~~~~~~~l~~~----~~~-~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~ 86 (186)
T 3t8k_A 12 AAAMLGTYEDFLELFEK----GYE-DKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGG 86 (186)
T ss_dssp HHHHHSCHHHHHHHHHH----SSS-CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHhc----Ccc-cccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Confidence 34577888876665543 211 111 112344445566666666677777777776665422 2333322222
Q ss_pred cCChhHHHHHHHHHHHcCCCcCH
Q 009556 160 KGLLGLGSRLLMVMEDMGICRNQ 182 (532)
Q Consensus 160 ~g~~~~A~~~~~~m~~~~~~~~~ 182 (532)
..+.....++.+.+.+.|..++.
T Consensus 87 ~~~~~~~~~iv~~Ll~~Gadin~ 109 (186)
T 3t8k_A 87 GNDITGTTELCKIFLEKGADITA 109 (186)
T ss_dssp TTCHHHHHHHHHHHHHTTCCSSS
T ss_pred CcchhhHHHHHHHHHHCCCCCCc
Confidence 12233445566666666655443
No 338
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=25.18 E-value=3.9e+02 Score=24.34 Aligned_cols=62 Identities=15% Similarity=0.178 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----HhHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCC
Q 009556 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPS----SISYASLIEALASVGR--TLEADAIFQEMVCFGFNP 145 (532)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~~~--~~~A~~~~~~~~~~g~~~ 145 (532)
.-..+|.-|...|+.++|.+.++++. .|+ ...+..+..++ ..++ .+.+-.++..+...|+-+
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~----~p~~~~~~~v~~~i~~aL-er~~~~re~~~~LL~~L~~~~~ls 81 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMR----APKHFLPEMLSKVIILSL-DRSDEDKEKASSLISLLKQEGIAT 81 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT----CCGGGHHHHHHHHHHHHH-TSCHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhC----CchhhHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHHHCCCCC
Confidence 34789999999999999999999986 343 22333333343 3332 234556666666655433
No 339
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=24.36 E-value=66 Score=27.80 Aligned_cols=48 Identities=15% Similarity=-0.016 Sum_probs=33.4
Q ss_pred HhcCCcChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhhccccc
Q 009556 473 IRAKKFHKVPEIYKQMESSGCTPDRKARQILQSALVVLEQRRCKQRLD 520 (532)
Q Consensus 473 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~a~~~~~~~~~~~~~~ 520 (532)
...|+.+.+.+.++++.+.|..|.......+..++...+++-....+.
T Consensus 47 l~~gd~~~~~~~~~~al~~g~~~~~i~~~~l~p~l~~vG~~w~~g~~~ 94 (258)
T 2i2x_B 47 IFEGEEDDVVEGLQAAIEAGKDPIDLIDDALMVGMGVVIRLYDEGVIF 94 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHSCCTTTHHHHTHHHHHHHHHHHHHTTSSC
T ss_pred HHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 345777778888888887777777777777777777777665444433
No 340
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=24.02 E-value=1.4e+02 Score=27.81 Aligned_cols=203 Identities=14% Similarity=0.099 Sum_probs=91.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHhH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH--hHHHHHHHHH
Q 009556 83 SIQYCCKLGDIDEAMALLAQMQALGFHPSSIS--YASLIEALASVGRTLEADAIFQEMVCFGFNPKLR--FYNILLRGFL 158 (532)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~--~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~--~~~~li~~~~ 158 (532)
.+...+..|+.+-+..++ +.|..++... ..+.+...+..|+.+-+..+++ .|..++.. ...+.+...+
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll----~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~ 88 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLL----QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ----NKAKVNAKAKDDQTPLHCAA 88 (437)
T ss_dssp HHHHHHHHTCHHHHHHHH----HTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHH----HTCCSSCCCTTSCCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHH----HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCCCHHHHHH
Confidence 455566778877655555 4454444221 1234455556777765555544 34333221 1123344455
Q ss_pred hcCChhHHHHHHHHHHHcCCCcCHH--HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcC---HHhHHHHHHHHHcCCCh
Q 009556 159 KKGLLGLGSRLLMVMEDMGICRNQE--TYEILLDYHVNAGRLDDTWLIINEMRSKGFQLN---SFVYGKVIGLYRDNGMW 233 (532)
Q Consensus 159 ~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~~~ 233 (532)
+.|+.+-..-++ +.|..++.. .-.+.+...+..|+.+-+..+++ .+..++ ..-. +.+...+..|+.
T Consensus 89 ~~g~~~~v~~Ll----~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~g~-t~L~~A~~~g~~ 159 (437)
T 1n11_A 89 RIGHTNMVKLLL----ENNANPNLATTAGHTPLHIAAREGHVETVLALLE----KEASQACMTKKGF-TPLHVAAKYGKV 159 (437)
T ss_dssp HHTCHHHHHHHH----HHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH----TTCCSCCCCTTSC-CHHHHHHHTTCH
T ss_pred HCCCHHHHHHHH----hCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh----CCCCCcCCCCCCC-CHHHHHHHcCCH
Confidence 667765444443 444433321 11223444556677665555443 333222 1111 234445566776
Q ss_pred HHHHHHHHHHHHcCCCCCHHH--HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHHcCCHHHHHHH
Q 009556 234 KKAVGIVEEIREMGLSLDRQI--YNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTW--NSLIRWHCKAGDVAKALEL 309 (532)
Q Consensus 234 ~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~--~~li~~~~~~g~~~~A~~~ 309 (532)
+-+ +.+.+.|..++... -...+...+..|+.+-+ +.+.+.|..++...+ .+.+...+..|+.+-+..+
T Consensus 160 ~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~L 231 (437)
T 1n11_A 160 RVA----ELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIV----KLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSL 231 (437)
T ss_dssp HHH----HHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHH----HHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred HHH----HHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence 544 34444444332110 01123344556665433 334444433322110 1223344566665544443
Q ss_pred H
Q 009556 310 F 310 (532)
Q Consensus 310 ~ 310 (532)
+
T Consensus 232 l 232 (437)
T 1n11_A 232 L 232 (437)
T ss_dssp H
T ss_pred H
Confidence 3
No 341
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=23.81 E-value=1.7e+02 Score=23.41 Aligned_cols=25 Identities=12% Similarity=0.137 Sum_probs=11.0
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCcC
Q 009556 192 HVNAGRLDDTWLIINEMRSKGFQLN 216 (532)
Q Consensus 192 ~~~~~~~~~a~~~~~~m~~~~~~~~ 216 (532)
.+..|+.+.-.++.+.+.+.|..++
T Consensus 45 A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 45 VLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHcCCcchHHHHHHHHHHCCCCCC
Confidence 3344444444444444444544443
No 342
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=23.69 E-value=1.1e+02 Score=25.32 Aligned_cols=59 Identities=17% Similarity=0.128 Sum_probs=30.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 009556 83 SIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPK 146 (532)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~ 146 (532)
.+...++.|+++....+++.-...-...+..-++. +...+..|+.+-+ +.+.+.|..++
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~A~~~g~~~~v----~~Ll~~g~~~~ 67 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTA-LHWACSAGHTEIV----EFLLQLGVPVN 67 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCH-HHHHHHHTCHHHH----HHHHHTTCCSC
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCH-HHHHHHcCcHHHH----HHHHHhCCCCC
Confidence 46666778898888887766332111223222333 3334455665443 34444554443
No 343
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=23.02 E-value=2.7e+02 Score=21.74 Aligned_cols=84 Identities=15% Similarity=0.174 Sum_probs=45.6
Q ss_pred CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHhHHHH
Q 009556 74 EFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNIL 153 (532)
Q Consensus 74 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~l 153 (532)
.+-...++..+..+.+...... ++-+.+.+.|+.+ +....+++.+.+.|+-.|...-..+
T Consensus 14 ~~~~~a~~~Al~~Ls~r~~s~~--EL~~KL~~kg~~~------------------e~Ie~vl~~l~~~g~ldD~rfA~~~ 73 (162)
T 3dfg_A 14 FKEQTPVQRALGLLVHREHSKK--ELNRKLQARGIEP------------------EAAQAAVERLAGEGWQDDVRFAASV 73 (162)
T ss_dssp ---CCHHHHHHHHHHHSCCCHH--HHHHHHHHTTCCH------------------HHHHHHHHHHHHTTSCCHHHHHHHH
T ss_pred chHHHHHHHHHHHhhchhhhHH--HHHHHHHhcCCCH------------------HHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3444567777777776544332 4556666666532 2344556666666665555444555
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCC
Q 009556 154 LRGFLKKGLLGLGSRLLMVMEDMGIC 179 (532)
Q Consensus 154 i~~~~~~g~~~~A~~~~~~m~~~~~~ 179 (532)
+....+.| .....+-.++...|+.
T Consensus 74 v~~~~~~~--~G~~~I~~eL~~KGI~ 97 (162)
T 3dfg_A 74 VRNRASSG--YGPLHIRAELGTHGLD 97 (162)
T ss_dssp HHHHHTTT--CCHHHHHHHHHHTTCC
T ss_pred HHHHHHcc--ccHHHHHHHHHHcCCC
Confidence 55544432 2334566677777773
No 344
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=22.57 E-value=3.2e+02 Score=22.38 Aligned_cols=17 Identities=35% Similarity=0.626 Sum_probs=8.5
Q ss_pred CChHHHHHHHHHHHHcC
Q 009556 91 GDIDEAMALLAQMQALG 107 (532)
Q Consensus 91 g~~~~A~~~~~~m~~~~ 107 (532)
.|.+.|+-.+-+|.+.|
T Consensus 28 SDpDAAly~LaRml~~G 44 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG 44 (204)
T ss_dssp TCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 44555555555555444
No 345
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=22.45 E-value=1.6e+02 Score=21.77 Aligned_cols=42 Identities=14% Similarity=-0.001 Sum_probs=26.0
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009556 99 LLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVC 140 (532)
Q Consensus 99 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 140 (532)
+|+.+....+.+++...-.-+..+...++++.|.+++..+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455555555544444433444455567788888888877775
No 346
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=21.87 E-value=2.3e+02 Score=21.43 Aligned_cols=46 Identities=20% Similarity=0.174 Sum_probs=30.1
Q ss_pred HHHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 009556 361 AILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQG 406 (532)
Q Consensus 361 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 406 (532)
..+++.+...+..-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3455666666667778888888877766666666555555555555
No 347
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=21.85 E-value=2.4e+02 Score=20.94 Aligned_cols=45 Identities=16% Similarity=0.194 Sum_probs=28.8
Q ss_pred HHHHHHHhcCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 009556 362 ILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQG 406 (532)
Q Consensus 362 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 406 (532)
.+++.+...+..-.|.++++.+.+.+...+..|.-..+..+...|
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 455555566667778888888877765556666555555555555
No 348
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=21.81 E-value=3e+02 Score=26.10 Aligned_cols=141 Identities=13% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 009556 240 VEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFY 319 (532)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 319 (532)
++-+.+.|++-....|..-.+.+...|++++|.++--.....-.+ +..|.+.+-..-...|+..-.+.+|..+.+.| .
T Consensus 349 ~~lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLR-t~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~ 426 (494)
T 1bpo_A 349 LRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILR-TPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-Q 426 (494)
T ss_dssp HHHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSC-SHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-C
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcccccc-CHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-c
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHH-----hcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHH
Q 009556 320 PDPKIFITIISCLGELGKWDVIKKNFENMK-----DRGHGKIGAIYAILVDIYGQYGRFRDPEECIAA 382 (532)
Q Consensus 320 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 382 (532)
.+..--.-+++.-...|+.+-..+.+.+=. +.|--.-..-.+..+..|.+++-..++...|-+
T Consensus 427 Ln~~ESlEl~r~vL~q~r~~llekWl~e~KL~~SEeLGDlvk~~d~~LAl~IY~~a~~~~Kvi~cl~e 494 (494)
T 1bpo_A 427 LNKYESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVYLRANVPNKVIQCFAE 494 (494)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHTCSCCCHHHHHHHHHHCSHHHHHHHHHHCCCCC-------
T ss_pred cchHHhhHHhHHHHhccHHHHHHHHHhcCCccccHHhHhhhhhcCHHHHHHHHHHcCCcHHHHHHhhC
No 349
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=21.20 E-value=5.2e+02 Score=24.30 Aligned_cols=55 Identities=11% Similarity=0.003 Sum_probs=35.4
Q ss_pred hcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCC-----hHHHHHHHHHHHHcCC
Q 009556 194 NAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGM-----WKKAVGIVEEIREMGL 248 (532)
Q Consensus 194 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~ 248 (532)
+.++.+.|+..+.+|.+.|..|....-..+..+.-.-|. ...|...++.....|.
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCC
Confidence 456788888888888888777666555555555554443 3345555666666664
No 350
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=21.06 E-value=7.4e+02 Score=26.01 Aligned_cols=163 Identities=7% Similarity=-0.072 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCC---HHHHHHHHHHHHHC--CCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 009556 116 ASLIEALASVGR---TLEADAIFQEMVCF--GFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLD 190 (532)
Q Consensus 116 ~~li~~~~~~~~---~~~A~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 190 (532)
..++...|..|. .+.|.+.|+..... +.+.....-..+...-.+.|..++-..+++..... .+..--..++.
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~g~~~~~~~l~~~~~~~---~~~~ek~~ll~ 766 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRSTIYCNAIAQGGQDQWDFAWGQLQQA---QLVNEADKLRS 766 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHHHHHHHHHHHSCHHHHHHHHHHHHHC---CSHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHcc---CCHHHHHHHHH
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCCChHHHHHHHHH---HHHcCCCCCHHHHHHHHHHHhccCC
Q 009556 191 YHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEE---IREMGLSLDRQIYNSIIDTFGKYGE 267 (532)
Q Consensus 191 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~---~~~~~~~~~~~~~~~li~~~~~~g~ 267 (532)
+++...+.+...++++................+..........+.+.+.+.+ ............+..++......-.
T Consensus 767 aL~~~~d~~~l~~~L~~~l~~~~ir~qd~~~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~~~~ 846 (909)
T 4fke_A 767 ALACSNEVWLLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRRFS 846 (909)
T ss_dssp HHTTCCCHHHHHHHHHHTTCTTTSCGGGHHHHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHTTCC
T ss_pred HhCCCCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhcC
Q ss_pred HHHHHHHHHHHHhC
Q 009556 268 LVEALEVFEKMQQE 281 (532)
Q Consensus 268 ~~~A~~~~~~m~~~ 281 (532)
.++-.+-++...+.
T Consensus 847 t~~~~~~~~~f~~~ 860 (909)
T 4fke_A 847 SEFELQQLEQFKKN 860 (909)
T ss_dssp SHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHhh
No 351
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=20.99 E-value=66 Score=25.88 Aligned_cols=14 Identities=14% Similarity=0.237 Sum_probs=6.6
Q ss_pred HHHHHHHHHCCCCC
Q 009556 307 LELFTQMQEQGFYP 320 (532)
Q Consensus 307 ~~~~~~m~~~~~~~ 320 (532)
.++.+.+.+.|..+
T Consensus 158 ~~~v~~Ll~~ga~~ 171 (201)
T 3hra_A 158 QDIVKLLMENGADQ 171 (201)
T ss_dssp HHHHHHHHHTTCCT
T ss_pred HHHHHHHHHCCCCC
Confidence 34444455555443
No 352
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=20.81 E-value=1.4e+02 Score=23.88 Aligned_cols=56 Identities=11% Similarity=0.052 Sum_probs=43.4
Q ss_pred CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHH
Q 009556 74 EFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLE 130 (532)
Q Consensus 74 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 130 (532)
.|....++.++..++...-.+.|+..++++...| ..+..+|..-++.+++..-+.+
T Consensus 108 ~~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g-~I~ld~ylK~vR~LaReQF~~r 163 (174)
T 2p22_A 108 VAKTDGLNQLYNLVAQDYALTDTIECLSRMLHRG-TIPLDTFVKQGRELARQQFLVR 163 (174)
T ss_dssp ECSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 4555677889999988888999999999988888 5777788877877776544433
No 353
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=20.62 E-value=7.7e+02 Score=26.04 Aligned_cols=88 Identities=8% Similarity=0.044 Sum_probs=54.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC------------------
Q 009556 398 LANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGIS------------------ 459 (532)
Q Consensus 398 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~------------------ 459 (532)
++..|...|.++-|.++..-+. .+...--.+..+|...|++++|.+.|+++.. |+.
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~-----~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCC-----SSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhcC-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCc
Confidence 4555666666665555443332 1222222455667777777777777765431 110
Q ss_pred -----CCHHHHHHHHHHHHhcCCcChHHHHHHHHHhC
Q 009556 460 -----PDLVTYSTLMKAFIRAKKFHKVPEIYKQMESS 491 (532)
Q Consensus 460 -----p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 491 (532)
....-|..+++.+-+.+.++.+.++-+..++.
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 01225788899999999999999988888864
No 354
>3lw5_I PSI-I, photosystem I reaction center subunit VIII; photosynthesis, electron transfer, membrane proteins, large, complexes, chromophore; HET: CLA PQN BCR LMU LMG; 3.30A {Pisum sativum} PDB: 2o01_I*
Probab=20.59 E-value=31 Score=18.15 Aligned_cols=8 Identities=38% Similarity=0.584 Sum_probs=4.6
Q ss_pred CCCccccc
Q 009556 1 MFNLKTIS 8 (532)
Q Consensus 1 ~~~~~~~~ 8 (532)
|||+|+|-
T Consensus 1 ~~~LPsi~ 8 (30)
T 3lw5_I 1 MINLPSLF 8 (30)
T ss_dssp CCCCCTTT
T ss_pred CCCCcchH
Confidence 56666553
No 355
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=20.51 E-value=3.1e+02 Score=21.41 Aligned_cols=57 Identities=12% Similarity=0.077 Sum_probs=32.2
Q ss_pred HhcCCCCCHhHHHHHHHHHHhcCCcccHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcC
Q 009556 349 KDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLE--GLQPSGSMFCILANAYAQQG 406 (532)
Q Consensus 349 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g 406 (532)
.+.|...+.. -..+++.+...+..-.|.++++.+.+. +...+..|.-.-+..+...|
T Consensus 25 ~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 25 RQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 3445554332 344555666666667777777777665 55555555444455555555
No 356
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=20.11 E-value=3.8e+02 Score=22.27 Aligned_cols=161 Identities=9% Similarity=-0.016 Sum_probs=0.0
Q ss_pred CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHcCC-ChHHHHHHHHHHHHcCCCCCHHHH
Q 009556 177 GICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNG-MWKKAVGIVEEIREMGLSLDRQIY 255 (532)
Q Consensus 177 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~ 255 (532)
|...+...+..+........-...|+.++.. -..+-.-|-.-+.+.| ..+.+..+++.+.+.|.-.|....
T Consensus 43 g~el~~e~~~~i~~~~~~~~a~~~Al~~Ls~--------r~~S~~EL~~KL~~kg~~~e~i~~vl~~L~~~g~ldD~rfA 114 (221)
T 3d5l_A 43 GTELDEKQIAAIATADQQAKAYSRMLDYLSY--------QMRTESDIVKKLKEIDTPEEFVEPILKKLRGQQLIDDHAYA 114 (221)
T ss_dssp TCEECHHHHHHHHHHHHHHHHHHHHHHHHTT--------SCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred CCCCCHHHHHHHHHhHHHHHHHHHHHHHhcc--------ccccHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHH
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHc
Q 009556 256 NSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPD-PKIFITIISCLGE 334 (532)
Q Consensus 256 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~ll~~~~~ 334 (532)
...+....+.+.+ ....+-.++.++|+ +.......+..+......+.|..+.++-......++ .....-++..+.+
T Consensus 115 ~~~v~~~~~~~~~-G~~~I~~eL~~KGI--~~~~I~~al~~~~~~~e~e~a~~l~~Kk~~~~~~~~~~~~k~K~~~~L~r 191 (221)
T 3d5l_A 115 ASYVRTMINTDLK-GPGIIRQHLRQKGI--GESDIDDALTQFTPEVQAELAKKLALKLFRRYRNQPERRREQKVQQGLTT 191 (221)
T ss_dssp HHHHHHHHHHCCC-CHHHHHHHHHHTTC--CHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccc-cHHHHHHHHHHcCC--CHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHh
Q ss_pred cC-CHHHHHHHHHHH
Q 009556 335 LG-KWDVIKKNFENM 348 (532)
Q Consensus 335 ~~-~~~~a~~~~~~~ 348 (532)
.| .++.+..+++.+
T Consensus 192 rGFs~~~I~~vl~~~ 206 (221)
T 3d5l_A 192 KGFSSSVYEMIKDEV 206 (221)
T ss_dssp TTCCHHHHHHHTTC-
T ss_pred CCCCHHHHHHHHHhc
Done!