Query 009558
Match_columns 532
No_of_seqs 256 out of 1421
Neff 4.8
Searched_HMMs 46136
Date Thu Mar 28 14:34:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009558.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009558hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0626 Beta-glucosidase, lact 100.0 5E-76 1.1E-80 627.7 18.8 260 250-512 23-420 (524)
2 PLN02814 beta-glucosidase 100.0 1.7E-71 3.7E-76 600.5 21.3 252 261-513 23-401 (504)
3 PLN02849 beta-glucosidase 100.0 3.6E-71 7.7E-76 597.8 21.1 250 261-513 25-399 (503)
4 PLN02998 beta-glucosidase 100.0 3.9E-71 8.4E-76 596.8 21.1 264 261-524 26-421 (497)
5 PF00232 Glyco_hydro_1: Glycos 100.0 7.3E-71 1.6E-75 588.4 13.0 261 263-524 2-387 (455)
6 PRK09593 arb 6-phospho-beta-gl 100.0 1.7E-69 3.8E-74 581.9 20.9 248 263-513 3-382 (478)
7 COG2723 BglB Beta-glucosidase/ 100.0 7.9E-69 1.7E-73 568.2 20.4 260 264-526 2-389 (460)
8 PRK13511 6-phospho-beta-galact 100.0 1.2E-68 2.6E-73 574.1 22.1 247 264-513 3-382 (469)
9 PRK09589 celA 6-phospho-beta-g 100.0 1.5E-68 3.3E-73 574.3 22.1 245 265-513 3-381 (476)
10 TIGR01233 lacG 6-phospho-beta- 100.0 1.7E-68 3.6E-73 572.9 21.7 260 264-525 2-400 (467)
11 PRK15014 6-phospho-beta-glucos 100.0 5.9E-68 1.3E-72 569.8 22.8 248 262-513 2-382 (477)
12 PRK09852 cryptic 6-phospho-bet 100.0 1.4E-66 3.1E-71 558.8 21.0 246 265-513 3-379 (474)
13 TIGR03356 BGL beta-galactosida 100.0 4.4E-65 9.6E-70 541.0 20.5 250 266-525 1-370 (427)
14 PF07021 MetW: Methionine bios 98.3 3.3E-07 7.1E-12 89.3 3.5 97 92-195 14-112 (193)
15 PF02449 Glyco_hydro_42: Beta- 98.3 7.1E-07 1.5E-11 93.8 4.9 70 316-389 10-80 (374)
16 PF00150 Cellulase: Cellulase 97.7 0.0001 2.2E-09 72.4 7.1 63 317-379 22-85 (281)
17 smart00633 Glyco_10 Glycosyl h 96.5 0.0077 1.7E-07 60.4 7.6 46 337-386 1-48 (254)
18 TIGR03587 Pse_Me-ase pseudamin 96.3 0.005 1.1E-07 60.2 5.1 97 93-194 45-142 (204)
19 COG1874 LacA Beta-galactosidas 96.3 0.0051 1.1E-07 70.2 5.7 70 316-389 30-102 (673)
20 PF08241 Methyltransf_11: Meth 95.9 0.012 2.5E-07 48.0 4.4 92 96-192 1-95 (95)
21 PF07745 Glyco_hydro_53: Glyco 95.7 0.031 6.8E-07 59.1 7.6 56 319-380 27-82 (332)
22 TIGR02081 metW methionine bios 94.5 0.15 3.3E-06 48.7 8.0 96 93-195 15-112 (194)
23 PTZ00098 phosphoethanolamine N 94.2 0.14 2.9E-06 51.9 7.3 128 65-195 25-157 (263)
24 TIGR02021 BchM-ChlM magnesium 94.1 0.12 2.6E-06 50.2 6.4 95 93-194 57-157 (219)
25 PF13489 Methyltransf_23: Meth 93.8 0.069 1.5E-06 47.9 4.0 94 90-194 21-115 (161)
26 PRK10150 beta-D-glucuronidase; 93.7 0.12 2.6E-06 58.2 6.5 43 316-375 313-355 (604)
27 PLN02161 beta-amylase 93.1 0.3 6.5E-06 54.3 8.1 95 312-409 113-234 (531)
28 PLN02336 phosphoethanolamine N 93.0 0.2 4.3E-06 54.5 6.5 135 93-233 39-178 (475)
29 PLN02803 beta-amylase 93.0 0.35 7.7E-06 54.0 8.3 91 316-409 107-224 (548)
30 PLN02905 beta-amylase 92.4 0.47 1E-05 54.0 8.5 95 312-409 282-403 (702)
31 PLN02801 beta-amylase 92.4 0.49 1.1E-05 52.6 8.5 91 316-409 37-154 (517)
32 PLN02705 beta-amylase 92.3 0.48 1E-05 53.7 8.3 69 316-387 268-348 (681)
33 PLN00197 beta-amylase; Provisi 92.2 0.68 1.5E-05 52.0 9.3 70 316-388 127-208 (573)
34 PRK07580 Mg-protoporphyrin IX 92.1 0.69 1.5E-05 44.7 8.3 105 79-192 51-163 (230)
35 PF01373 Glyco_hydro_14: Glyco 91.4 0.32 6.9E-06 52.8 5.6 70 315-387 15-96 (402)
36 PRK10258 biotin biosynthesis p 90.2 0.56 1.2E-05 46.4 5.8 127 63-195 12-141 (251)
37 PRK05785 hypothetical protein; 90.1 1.1 2.4E-05 44.5 7.7 98 92-197 52-150 (226)
38 PF01301 Glyco_hydro_35: Glyco 90.1 0.37 8.1E-06 50.5 4.6 71 317-388 25-103 (319)
39 COG2730 BglC Endoglucanase [Ca 89.0 0.84 1.8E-05 49.3 6.4 69 312-380 64-140 (407)
40 PF11790 Glyco_hydro_cc: Glyco 88.0 1 2.2E-05 45.2 5.8 27 483-510 150-176 (239)
41 TIGR02072 BioC biotin biosynth 86.0 1.9 4.1E-05 41.2 6.3 97 93-194 36-135 (240)
42 PRK06202 hypothetical protein; 85.3 0.95 2E-05 44.4 3.9 100 90-192 59-165 (232)
43 TIGR00740 methyltransferase, p 84.8 3 6.5E-05 41.1 7.2 116 74-194 36-161 (239)
44 smart00828 PKS_MT Methyltransf 84.8 2.2 4.9E-05 41.2 6.2 96 93-195 1-105 (224)
45 PRK11036 putative S-adenosyl-L 83.9 1.7 3.7E-05 43.4 5.1 101 90-196 43-151 (255)
46 PLN02233 ubiquinone biosynthes 83.2 4.2 9.1E-05 41.2 7.6 128 64-194 22-182 (261)
47 PF08242 Methyltransf_12: Meth 82.0 0.89 1.9E-05 38.2 1.9 87 96-184 1-92 (99)
48 TIGR00477 tehB tellurite resis 81.2 3 6.6E-05 40.2 5.5 108 74-192 19-131 (195)
49 PLN02244 tocopherol O-methyltr 80.5 5 0.00011 42.2 7.3 99 91-194 118-223 (340)
50 cd02440 AdoMet_MTases S-adenos 79.5 2.5 5.4E-05 33.3 3.7 97 94-193 1-103 (107)
51 PRK11207 tellurite resistance 79.1 3.5 7.6E-05 39.8 5.2 110 72-192 17-132 (197)
52 TIGR00452 methyltransferase, p 77.3 6.7 0.00015 41.3 7.0 97 93-193 123-224 (314)
53 PLN03059 beta-galactosidase; P 73.3 5.9 0.00013 47.0 5.9 71 316-387 59-137 (840)
54 PLN02585 magnesium protoporphy 71.9 5.6 0.00012 41.9 4.9 95 92-191 145-247 (315)
55 PRK15451 tRNA cmo(5)U34 methyl 71.0 6.6 0.00014 39.2 4.9 152 70-237 35-197 (247)
56 PF13649 Methyltransf_25: Meth 70.1 3.5 7.6E-05 34.9 2.4 89 95-186 1-98 (101)
57 TIGR02752 MenG_heptapren 2-hep 69.7 6.3 0.00014 38.3 4.3 97 93-192 47-149 (231)
58 PRK01683 trans-aconitate 2-met 68.6 9.8 0.00021 37.7 5.6 102 90-198 30-133 (258)
59 PRK00312 pcm protein-L-isoaspa 68.3 14 0.0003 35.7 6.4 92 92-194 79-175 (212)
60 TIGR01934 MenG_MenH_UbiE ubiqu 67.8 11 0.00024 35.7 5.5 98 93-195 41-144 (223)
61 PRK12335 tellurite resistance 66.5 5.5 0.00012 40.7 3.4 109 73-192 108-221 (287)
62 PLN02396 hexaprenyldihydroxybe 66.4 7.5 0.00016 41.1 4.4 95 94-194 134-235 (322)
63 PLN02336 phosphoethanolamine N 66.2 12 0.00026 40.7 6.1 97 93-194 268-369 (475)
64 PF00331 Glyco_hydro_10: Glyco 65.1 17 0.00036 38.1 6.7 85 266-387 6-92 (320)
65 PRK08317 hypothetical protein; 64.4 7.4 0.00016 37.0 3.6 99 93-194 21-124 (241)
66 PRK15068 tRNA mo(5)U34 methylt 64.4 8.6 0.00019 40.4 4.4 98 93-194 124-226 (322)
67 PF14488 DUF4434: Domain of un 62.7 19 0.00042 34.5 6.1 62 316-379 20-88 (166)
68 COG5309 Exo-beta-1,3-glucanase 59.9 74 0.0016 33.5 10.0 161 307-511 54-243 (305)
69 smart00138 MeTrc Methyltransfe 58.9 18 0.00039 36.9 5.4 115 79-195 86-242 (264)
70 TIGR02469 CbiT precorrin-6Y C5 58.6 17 0.00036 31.0 4.5 99 92-195 20-123 (124)
71 PRK11088 rrmA 23S rRNA methylt 58.0 36 0.00078 34.4 7.4 100 83-194 77-181 (272)
72 PRK00121 trmB tRNA (guanine-N( 56.1 7.8 0.00017 37.6 2.2 132 79-210 28-173 (202)
73 PF12847 Methyltransf_18: Meth 55.5 16 0.00035 30.8 3.8 100 93-193 3-110 (112)
74 TIGR03534 RF_mod_PrmC protein- 55.4 37 0.00081 33.0 6.9 66 93-162 89-160 (251)
75 PF13348 Y_phosphatase3C: Tyro 55.3 1.4 3E-05 35.5 -2.6 43 480-522 25-68 (68)
76 PF13204 DUF4038: Protein of u 55.0 33 0.00071 35.6 6.7 60 319-378 33-110 (289)
77 PF05401 NodS: Nodulation prot 54.4 11 0.00024 37.7 2.9 99 92-194 44-146 (201)
78 PF13847 Methyltransf_31: Meth 54.1 26 0.00057 31.8 5.2 102 90-197 2-112 (152)
79 smart00642 Aamy Alpha-amylase 53.5 36 0.00078 32.4 6.2 67 315-381 18-97 (166)
80 TIGR01983 UbiG ubiquinone bios 53.0 18 0.00038 34.8 4.1 96 93-194 47-149 (224)
81 PF02836 Glyco_hydro_2_C: Glyc 52.5 9.6 0.00021 38.9 2.3 46 315-377 35-80 (298)
82 COG3867 Arabinogalactan endo-1 52.1 1.3E+02 0.0028 32.4 10.4 89 264-383 33-134 (403)
83 PRK13944 protein-L-isoaspartat 52.0 37 0.00081 32.9 6.2 90 93-194 74-173 (205)
84 TIGR00417 speE spermidine synt 50.4 16 0.00035 37.1 3.5 120 68-193 52-185 (270)
85 PRK05134 bifunctional 3-demeth 50.0 13 0.00028 36.2 2.7 101 92-195 49-152 (233)
86 PF11899 DUF3419: Protein of u 49.9 8.5 0.00018 41.7 1.5 39 154-192 293-332 (380)
87 PRK13942 protein-L-isoaspartat 49.7 43 0.00093 32.8 6.2 90 93-193 78-175 (212)
88 PRK00216 ubiE ubiquinone/menaq 49.7 18 0.0004 34.6 3.6 99 93-194 53-158 (239)
89 PF01229 Glyco_hydro_39: Glyco 49.6 19 0.00042 39.8 4.2 58 317-377 40-105 (486)
90 PLN02490 MPBQ/MSBQ methyltrans 48.8 20 0.00044 38.3 4.1 97 93-194 115-215 (340)
91 PLN02808 alpha-galactosidase 44.1 89 0.0019 34.2 8.1 60 314-382 131-190 (386)
92 COG2355 Zn-dependent dipeptida 43.2 1.2E+02 0.0026 32.4 8.6 114 320-448 112-228 (313)
93 KOG0496 Beta-galactosidase [Ca 42.6 56 0.0012 38.0 6.5 72 316-388 49-128 (649)
94 PRK08287 cobalt-precorrin-6Y C 41.3 35 0.00075 32.3 4.0 93 93-193 33-130 (187)
95 TIGR00433 bioB biotin syntheta 39.2 82 0.0018 31.9 6.6 54 319-375 123-177 (296)
96 PF03198 Glyco_hydro_72: Gluca 38.8 41 0.0009 35.8 4.4 48 317-378 54-101 (314)
97 PF01135 PCMT: Protein-L-isoas 38.3 41 0.00089 33.4 4.2 98 93-199 74-178 (209)
98 COG3250 LacZ Beta-galactosidas 37.6 36 0.00077 40.6 4.1 25 312-336 317-341 (808)
99 PLN02361 alpha-amylase 37.2 79 0.0017 34.7 6.4 67 313-379 26-101 (401)
100 TIGR00406 prmA ribosomal prote 34.7 63 0.0014 33.2 5.0 104 93-202 161-267 (288)
101 PF10717 ODV-E18: Occlusion-de 34.3 25 0.00054 30.7 1.6 32 29-60 23-54 (85)
102 smart00650 rADc Ribosomal RNA 33.0 78 0.0017 29.5 4.9 94 93-192 15-111 (169)
103 TIGR00537 hemK_rel_arch HemK-r 33.0 64 0.0014 30.2 4.4 70 93-166 21-92 (179)
104 PF00128 Alpha-amylase: Alpha 32.3 1.2E+02 0.0027 29.6 6.5 58 319-378 7-76 (316)
105 PF12147 Methyltransf_20: Puta 32.3 26 0.00056 37.2 1.7 143 75-219 121-278 (311)
106 PLN00196 alpha-amylase; Provis 32.1 83 0.0018 34.7 5.6 66 314-379 42-117 (428)
107 PRK11705 cyclopropane fatty ac 29.6 2E+02 0.0044 31.0 8.0 106 81-193 156-266 (383)
108 PRK00517 prmA ribosomal protei 27.8 1.3E+02 0.0028 30.2 5.8 98 91-199 119-218 (250)
109 PRK03612 spermidine synthase; 27.4 1.4E+02 0.0029 33.7 6.4 100 91-194 297-415 (521)
110 PRK14103 trans-aconitate 2-met 27.0 1.1E+02 0.0024 30.5 5.1 93 92-193 30-125 (255)
111 PRK10340 ebgA cryptic beta-D-g 26.7 41 0.00088 41.0 2.3 24 314-337 353-376 (1021)
112 PLN02784 alpha-amylase 26.5 1.4E+02 0.0031 36.0 6.6 67 313-379 518-593 (894)
113 PRK09525 lacZ beta-D-galactosi 25.8 43 0.00094 40.9 2.3 24 314-337 369-392 (1027)
114 PLN02389 biotin synthase 24.8 2.1E+02 0.0045 31.1 7.0 63 318-383 177-242 (379)
115 TIGR00539 hemN_rel putative ox 24.6 91 0.002 33.0 4.2 62 319-383 100-163 (360)
116 TIGR03581 EF_0839 conserved hy 24.0 1.3E+02 0.0028 30.8 4.9 23 313-335 132-154 (236)
117 cd07939 DRE_TIM_NifV Streptomy 23.7 1.1E+02 0.0025 30.8 4.6 59 319-377 72-131 (259)
118 cd07948 DRE_TIM_HCS Saccharomy 22.5 1.4E+02 0.0031 30.6 5.0 64 319-382 74-139 (262)
119 PF14871 GHL6: Hypothetical gl 22.3 3.6E+02 0.0079 24.9 7.2 59 320-380 4-69 (132)
120 PRK00811 spermidine synthase; 22.0 1.1E+02 0.0025 31.4 4.2 115 72-192 60-189 (283)
121 PF03141 Methyltransf_29: Puta 21.2 1.3E+02 0.0028 34.1 4.7 120 76-201 104-226 (506)
122 PF04639 Baculo_E56: Baculovir 21.2 60 0.0013 34.3 2.0 33 12-45 257-289 (305)
123 PRK09441 cytoplasmic alpha-amy 21.1 1.6E+02 0.0035 32.5 5.4 67 313-379 19-106 (479)
124 PLN02692 alpha-galactosidase 21.0 3.4E+02 0.0074 30.1 7.7 59 315-382 156-214 (412)
125 PLN02823 spermine synthase 20.8 1.6E+02 0.0034 31.5 5.1 41 70-113 85-125 (336)
126 PF03511 Fanconi_A: Fanconi an 20.2 79 0.0017 26.3 2.0 41 340-382 19-59 (64)
127 PRK09328 N5-glutamine S-adenos 20.1 1.8E+02 0.004 28.8 5.2 68 93-162 110-181 (275)
No 1
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5e-76 Score=627.69 Aligned_cols=260 Identities=54% Similarity=0.954 Sum_probs=227.2
Q ss_pred CCCcccccccccCcCCCCCCcEEeeeechhhhcCccCCCCCCCccceeccccCc-c---CCCCccCCccccccHHHHHHH
Q 009558 250 KPASSALTAVEYTKNDFPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFAHAGN-V---LGNGDIACDEYHKYKEDVKLM 325 (532)
Q Consensus 250 ~p~cqifhL~~~~~~~FP~dFlwG~ATSA~QvEGa~~~dGkg~SiWD~~~~~~~-~---g~~~dva~D~YhrYkEDI~Lm 325 (532)
.+.|...+ .+.+..||+||+||+||||||+|||+++|||++|+||.|+|..+ . +.++|+|||+||||+|||+||
T Consensus 23 ~~~~~~~~--~~~r~~FP~~F~FGtAtSAyQ~EGA~~e~gRg~svWD~f~~~~p~~~~~~~ngdva~D~Yh~ykeDv~Lm 100 (524)
T KOG0626|consen 23 SSVCPKTT--KFSRADFPKGFLFGTATSAYQVEGAANEDGRGPSVWDTFTHKYPGKICDGSNGDVAVDFYHRYKEDVKLM 100 (524)
T ss_pred cccCcccC--cccccCCCCCceeeccchHHHhhhhhccCCCCCchhhhhhccCCcccccCCCCCeechhhhhhHHHHHHH
Confidence 45566555 66788999999999999999999999999999999999998644 2 667999999999999999999
Q ss_pred HHcCCCEEEecccccccccCCC--CCCChhHHHHHHHHHHHHHHCCCeeEEEeccCCcchhHHhhhCCccccceE-----
Q 009558 326 AKTGLDAYRFSISWSRLIPNGR--GPVNPKGLQYYNNLINELISYGIQPHVTLHHSDLPQALEDEYGGWINRMIV----- 398 (532)
Q Consensus 326 ~elGv~ayRFSIsWsRI~P~G~--G~vN~~Gi~~Y~~lId~L~~~GIePiVTL~HfdlP~~L~d~~GGW~n~~~v----- 398 (532)
++||+++|||||+||||+|.|+ +.||++||+||+++|++|+++||+|+|||||||+||+|+|+||||+|+++|
T Consensus 101 k~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTLfHwDlPq~LeDeYgGwLn~~ivedF~~ 180 (524)
T KOG0626|consen 101 KELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTLFHWDLPQALEDEYGGWLNPEIVEDFRD 180 (524)
T ss_pred HHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCCCCHHHHHHhccccCHHHHHHHHH
Confidence 9999999999999999999998 689999999999999999999999999999999999999999999999988
Q ss_pred --------------------------------------------------------------------------------
Q 009558 399 -------------------------------------------------------------------------------- 398 (532)
Q Consensus 399 -------------------------------------------------------------------------------- 398 (532)
T Consensus 181 yA~~CF~~fGDrVK~WiT~NEP~v~s~~gY~~G~~aPGrCs~~~~~c~~g~s~~epYiv~HNllLAHA~Av~~yr~kyk~ 260 (524)
T KOG0626|consen 181 YADLCFQEFGDRVKHWITFNEPNVFSIGGYDTGTKAPGRCSKYVGNCSAGNSGTEPYIVAHNLLLAHAAAVDLYRKKYKK 260 (524)
T ss_pred HHHHHHHHhcccceeeEEecccceeeeehhccCCCCCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhh
Confidence
Q ss_pred --------------------------------------EecccccCCCcchhhcccCCCCCCCChhHHhhhcCCCceeee
Q 009558 399 --------------------------------------VANPLVYGDYPKIMKQNAGSRLPAFTDHESQQIKGSADFIGV 440 (532)
Q Consensus 399 --------------------------------------FlDPi~~GdYP~~m~e~lGsrLP~FT~eE~elIkgslDFLGI 440 (532)
|++|+++|+||+.|++.+|+|||.||++|.+++||+.||+||
T Consensus 261 ~Q~G~IGi~~~~~w~eP~~~s~~D~~Aa~Ra~~F~~gw~l~p~~~GdYP~~Mk~~vg~rLP~FT~ee~~~lKGS~DFvGi 340 (524)
T KOG0626|consen 261 KQGGKIGIALSARWFEPYDDSKEDKEAAERALDFFLGWFLEPLTFGDYPDEMKERVGSRLPKFTEEESKLLKGSYDFVGI 340 (524)
T ss_pred hcCCeEeEEEeeeeeccCCCChHHHHHHHHHHHhhhhhhhcccccCCcHHHHHHHhcccCCCCCHHHHHHhcCchhhcee
Confidence 889988999999999999999999999999999999999999
Q ss_pred ecccceeeecCCCCcccCCCCCCCCccccccccC---------CCCCCCCCchHHHHHHHHHHHHcCCCCEEEEeCCCCC
Q 009558 441 INYYTVYIKDNPSSLKQKHRDWSADTATKFFFKQ---------DTAASSNEPSSLQIVLEYFKQVYGNPPIYIHENGSLS 511 (532)
Q Consensus 441 NYYTs~~Vka~~~~~~~~~~~~~~D~~v~~~~~~---------~t~~GeIyP~GLr~iL~~Ik~rYgn~PIyITENGig~ 511 (532)
||||+.+|+...............|..+.. ... .+.+-.++|+|||++|+|++++|+||||||||||++.
T Consensus 341 NyYts~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~~~~~~~~~~~~v~P~Glr~~L~yiK~~Y~np~iyItENG~~d 419 (524)
T KOG0626|consen 341 NYYTSRYVKHLKPPPDPSQPGWSTDSGVDW-TLEGNDLIGPKAGSDWLPVYPWGLRKLLNYIKDKYGNPPIYITENGFDD 419 (524)
T ss_pred ehhhhhhhhccCCCCCCCCcccccccceee-eecccccccccccccceeeccHHHHHHHHHHHhhcCCCcEEEEeCCCCc
Confidence 999999998865432211122223332222 111 1112289999999999999999999999999999998
Q ss_pred C
Q 009558 512 L 512 (532)
Q Consensus 512 ~ 512 (532)
.
T Consensus 420 ~ 420 (524)
T KOG0626|consen 420 L 420 (524)
T ss_pred c
Confidence 5
No 2
>PLN02814 beta-glucosidase
Probab=100.00 E-value=1.7e-71 Score=600.49 Aligned_cols=252 Identities=58% Similarity=0.985 Sum_probs=212.0
Q ss_pred cCcCCCCCCcEEeeeechhhhcCccCCCCCCCccceeccccCccCCCCccCCccccccHHHHHHHHHcCCCEEEeccccc
Q 009558 261 YTKNDFPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFAHAGNVLGNGDIACDEYHKYKEDVKLMAKTGLDAYRFSISWS 340 (532)
Q Consensus 261 ~~~~~FP~dFlwG~ATSA~QvEGa~~~dGkg~SiWD~~~~~~~~g~~~dva~D~YhrYkEDI~Lm~elGv~ayRFSIsWs 340 (532)
+.+.+||++|+||+|||||||||+++++||++|+||.|++.. .+.++++||||||||+|||+||++||+|+|||||+||
T Consensus 23 ~~~~~fP~~FlwG~AtaA~QiEGa~~~~gkg~siwD~~~~~~-~~~~~~~a~D~Yhry~EDI~L~k~lG~~ayRfSIsWs 101 (504)
T PLN02814 23 FTRNDFPEDFLFGAATSAYQWEGAVDEDGRTPSVWDTTSHCY-NGGNGDIASDGYHKYKEDVKLMAEMGLESFRFSISWS 101 (504)
T ss_pred cccccCCCCCEEeeechhhhhcCCcCCCCCccchhheeeecc-CCCCCCccccHHHhhHHHHHHHHHcCCCEEEEeccHh
Confidence 345679999999999999999999999999999999998742 2458899999999999999999999999999999999
Q ss_pred ccccCCCCCCChhHHHHHHHHHHHHHHCCCeeEEEeccCCcchhHHhhhCCccccceE----------------------
Q 009558 341 RLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHSDLPQALEDEYGGWINRMIV---------------------- 398 (532)
Q Consensus 341 RI~P~G~G~vN~~Gi~~Y~~lId~L~~~GIePiVTL~HfdlP~~L~d~~GGW~n~~~v---------------------- 398 (532)
||+|+|.|.+|++|++||+++||+|+++||+|||||||||+|+||+++||||+|++++
T Consensus 102 RI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk~Wi 181 (504)
T PLN02814 102 RLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLPQSLEDEYGGWINRKIIEDFTAFADVCFREFGEDVKLWT 181 (504)
T ss_pred hcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhcCCcCChhHHHHHHHHHHHHHHHhCCcCCEEE
Confidence 9999999999999999999999999999999999999999999999999999999766
Q ss_pred --------------------------------------------------------------------------------
Q 009558 399 -------------------------------------------------------------------------------- 398 (532)
Q Consensus 399 -------------------------------------------------------------------------------- 398 (532)
T Consensus 182 T~NEP~~~~~~gy~~G~~pg~~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~Av~~~~~~~~~~~~g~IGi~~~~~~~~P 261 (504)
T PLN02814 182 TINEATIFAIGSYGQGIRYGHCSPNKFINCSTGNSCTETYIAGHNMLLAHASASNLYKLKYKSKQRGSIGLSIFAFGLSP 261 (504)
T ss_pred eccccchhhhcccccCcCCCCCCcccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCceeec
Confidence
Q ss_pred ---------------------EecccccCCCcchhhcccCCCCCCCChhHHhhhcCCCceeeeecccceeeecCCCCccc
Q 009558 399 ---------------------VANPLVYGDYPKIMKQNAGSRLPAFTDHESQQIKGSADFIGVINYYTVYIKDNPSSLKQ 457 (532)
Q Consensus 399 ---------------------FlDPi~~GdYP~~m~e~lGsrLP~FT~eE~elIkgslDFLGINYYTs~~Vka~~~~~~~ 457 (532)
|+||++.|+||+.|++.++.++|.||++|+++|++++||||||||++.+|+..+.....
T Consensus 262 ~~~~~~D~~Aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~ikg~~DFiGiNyYt~~~v~~~~~~~~~ 341 (504)
T PLN02814 262 YTNSKDDEIATQRAKAFLYGWMLKPLVFGDYPDEMKRTLGSRLPVFSEEESEQVKGSSDFVGIIHYTTFYVTNRPAPSIF 341 (504)
T ss_pred CCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEcccccceeccCCCCCcc
Confidence 44555566777777777777889999999999999999999999999999753211000
Q ss_pred -C-CCCCCCCccc-cccccCCCCCC-CCCchHHHHHHHHHHHHcCCCCEEEEeCCCCCCC
Q 009558 458 -K-HRDWSADTAT-KFFFKQDTAAS-SNEPSSLQIVLEYFKQVYGNPPIYIHENGSLSLS 513 (532)
Q Consensus 458 -~-~~~~~~D~~v-~~~~~~~t~~G-eIyP~GLr~iL~~Ik~rYgn~PIyITENGig~~d 513 (532)
. ...+..+.+. ..+..+.+++| +|||+|||++|++++++|+++||||||||+|..+
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~gWei~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~ 401 (504)
T PLN02814 342 PSMNEGFFTDMGAYIISAGNSSFFEFDATPWGLEGILEHIKQSYNNPPIYILENGMPMKH 401 (504)
T ss_pred cccCCCcccccccccCCCCCcCCCCCeECcHHHHHHHHHHHHhcCCCCEEEECCCCCCCC
Confidence 0 0011111111 11123456788 9999999999999999999889999999998644
No 3
>PLN02849 beta-glucosidase
Probab=100.00 E-value=3.6e-71 Score=597.85 Aligned_cols=250 Identities=59% Similarity=1.061 Sum_probs=208.8
Q ss_pred cCcCCCCCCcEEeeeechhhhcCccCCCCCCCccceeccccCccCCCCccCCccccccHHHHHHHHHcCCCEEEeccccc
Q 009558 261 YTKNDFPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFAHAGNVLGNGDIACDEYHKYKEDVKLMAKTGLDAYRFSISWS 340 (532)
Q Consensus 261 ~~~~~FP~dFlwG~ATSA~QvEGa~~~dGkg~SiWD~~~~~~~~g~~~dva~D~YhrYkEDI~Lm~elGv~ayRFSIsWs 340 (532)
+.+.+||+||+||+|||||||||++++|||++|+||.|++.+. +.++++||||||||+|||+||++||+|+|||||+||
T Consensus 25 ~~~~~FP~dFlwG~AtsA~QiEGa~~~~Gkg~SiwD~~~~~~~-~~~~~~a~D~YhrY~eDI~Lm~~lG~~aYRfSIsWs 103 (503)
T PLN02849 25 YSRSDFPEGFVFGAGTSAYQWEGAFDEDGRKPSVWDTFLHSRN-MSNGDIACDGYHKYKEDVKLMVETGLDAFRFSISWS 103 (503)
T ss_pred CccccCCCCCEEEeechhhhhcCCcCCCCCcCcceeeeeccCC-CCCCCccccHHHhHHHHHHHHHHcCCCeEEEeccHH
Confidence 5567899999999999999999999999999999999987542 457889999999999999999999999999999999
Q ss_pred ccccCCCCCCChhHHHHHHHHHHHHHHCCCeeEEEeccCCcchhHHhhhCCccccceE----------------------
Q 009558 341 RLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHSDLPQALEDEYGGWINRMIV---------------------- 398 (532)
Q Consensus 341 RI~P~G~G~vN~~Gi~~Y~~lId~L~~~GIePiVTL~HfdlP~~L~d~~GGW~n~~~v---------------------- 398 (532)
||+|+|.|.+|++|++||+++||+|+++||+|||||||||+|+||+++||||+|++++
T Consensus 104 RI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~nr~~v~~F~~YA~~~f~~fgDrVk~Wi 183 (503)
T PLN02849 104 RLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHPQYLEDDYGGWINRRIIKDFTAYADVCFREFGNHVKFWT 183 (503)
T ss_pred hcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCcHHHHHhcCCcCCchHHHHHHHHHHHHHHHhcCcCCEEE
Confidence 9999998999999999999999999999999999999999999999989999999876
Q ss_pred -Ee-----------------------------------------------------------------------------
Q 009558 399 -VA----------------------------------------------------------------------------- 400 (532)
Q Consensus 399 -Fl----------------------------------------------------------------------------- 400 (532)
||
T Consensus 184 T~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~A~~~~~~~~~~~~~~~IGi~~~~~~~~P 263 (503)
T PLN02849 184 TINEANIFTIGGYNDGITPPGRCSSPGRNCSSGNSSTEPYIVGHNLLLAHASVSRLYKQKYKDMQGGSIGFSLFALGFTP 263 (503)
T ss_pred EecchhhhhhchhhhccCCCCccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEEECceeec
Confidence 44
Q ss_pred -----------------------cccccCCCcchhhcccCCCCCCCChhHHhhhcCCCceeeeecccceeeecCCCCcc-
Q 009558 401 -----------------------NPLVYGDYPKIMKQNAGSRLPAFTDHESQQIKGSADFIGVINYYTVYIKDNPSSLK- 456 (532)
Q Consensus 401 -----------------------DPi~~GdYP~~m~e~lGsrLP~FT~eE~elIkgslDFLGINYYTs~~Vka~~~~~~- 456 (532)
||++.|+||+.|++.++.++|.|+++|+++|++++||||||||++.+|+.......
T Consensus 264 ~~~~~~D~~AA~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~i~~~~DFlGiNyYt~~~v~~~~~~~~~ 343 (503)
T PLN02849 264 STSSKDDDIATQRAKDFYLGWMLEPLIFGDYPDEMKRTIGSRLPVFSKEESEQVKGSSDFIGVIHYLAASVTNIKIKPSL 343 (503)
T ss_pred CCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEeccchhhcccCCCCCCC
Confidence 44445555555555555667889999999999999999999999999975321110
Q ss_pred cCCCCCCCCccccccccCCCCCC-CCCchHHHHHHHHHHHHcCCCCEEEEeCCCCCCC
Q 009558 457 QKHRDWSADTATKFFFKQDTAAS-SNEPSSLQIVLEYFKQVYGNPPIYIHENGSLSLS 513 (532)
Q Consensus 457 ~~~~~~~~D~~v~~~~~~~t~~G-eIyP~GLr~iL~~Ik~rYgn~PIyITENGig~~d 513 (532)
.....+...... +....+++| +|||+|||++|++++++|+++||||||||+|..|
T Consensus 344 ~~~~~~~~~~~~--~~~~~~~~gw~i~P~Gl~~~L~~~~~rY~~pPi~ITENG~~~~d 399 (503)
T PLN02849 344 SGNPDFYSDMGV--SLGKFSAFEYAVAPWAMESVLEYIKQSYGNPPVYILENGTPMKQ 399 (503)
T ss_pred CCCCccccccCC--CCCccCCCCCeEChHHHHHHHHHHHHhcCCCCEEEeCCCCCccC
Confidence 000011111100 112244677 9999999999999999999889999999999755
No 4
>PLN02998 beta-glucosidase
Probab=100.00 E-value=3.9e-71 Score=596.83 Aligned_cols=264 Identities=66% Similarity=1.145 Sum_probs=212.9
Q ss_pred cCcCCCCCCcEEeeeechhhhcCccCCCCCCCccceeccccCccC-CCCccCCccccccHHHHHHHHHcCCCEEEecccc
Q 009558 261 YTKNDFPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFAHAGNVL-GNGDIACDEYHKYKEDVKLMAKTGLDAYRFSISW 339 (532)
Q Consensus 261 ~~~~~FP~dFlwG~ATSA~QvEGa~~~dGkg~SiWD~~~~~~~~g-~~~dva~D~YhrYkEDI~Lm~elGv~ayRFSIsW 339 (532)
+.+.+||++|+||+|||||||||++++|||++|+||.|++.+..+ .++++||||||||+|||+||++||+|+|||||+|
T Consensus 26 ~~~~~FP~~FlwG~AtSA~QvEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~a~D~Yhry~EDi~lmk~lG~~~YRfSIsW 105 (497)
T PLN02998 26 YSRNDFPPGFVFGSGTSAYQVEGAADEDGRTPSIWDVFAHAGHSGVAAGNVACDQYHKYKEDVKLMADMGLEAYRFSISW 105 (497)
T ss_pred CccccCCCCCEEeeechHHHhCCCcCCCCCccchhhcccccCcCCCCCCcccccHHHhhHHHHHHHHHcCCCeEEeeccH
Confidence 446689999999999999999999999999999999998854323 4788999999999999999999999999999999
Q ss_pred cccccCCCCCCChhHHHHHHHHHHHHHHCCCeeEEEeccCCcchhHHhhhCCccccceE---------------------
Q 009558 340 SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHSDLPQALEDEYGGWINRMIV--------------------- 398 (532)
Q Consensus 340 sRI~P~G~G~vN~~Gi~~Y~~lId~L~~~GIePiVTL~HfdlP~~L~d~~GGW~n~~~v--------------------- 398 (532)
|||+|+|.|.+|++|++||+++||+|+++||+|||||||||+|+||+++||||+|++++
T Consensus 106 sRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP~~L~~~yGGW~n~~~v~~F~~YA~~~~~~fgdrVk~W 185 (497)
T PLN02998 106 SRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHHFDLPQALEDEYGGWLSQEIVRDFTAYADTCFKEFGDRVSHW 185 (497)
T ss_pred HhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhhCCcCCchHHHHHHHHHHHHHHHhcCcCCEE
Confidence 99999999999999999999999999999999999999999999999989999999766
Q ss_pred --Ee----------------------------------------------------------------------------
Q 009558 399 --VA---------------------------------------------------------------------------- 400 (532)
Q Consensus 399 --Fl---------------------------------------------------------------------------- 400 (532)
||
T Consensus 186 iT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~A~~~~~~~~~~~~~g~IGi~~~~~~~ 265 (497)
T PLN02998 186 TTINEVNVFALGGYDQGITPPARCSPPFGLNCTKGNSSIEPYIAVHNMLLAHASATILYKQQYKYKQHGSVGISVYTYGA 265 (497)
T ss_pred EEccCcchhhhcchhhcccCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEeCCee
Confidence 33
Q ss_pred -------------------------cccccCCCcchhhcccCCCCCCCChhHHhhhcCCCceeeeecccceeeecCCCCc
Q 009558 401 -------------------------NPLVYGDYPKIMKQNAGSRLPAFTDHESQQIKGSADFIGVINYYTVYIKDNPSSL 455 (532)
Q Consensus 401 -------------------------DPi~~GdYP~~m~e~lGsrLP~FT~eE~elIkgslDFLGINYYTs~~Vka~~~~~ 455 (532)
||++.|+||+.|++.++.++|.||++|+++|++++||||||||++.+|++.....
T Consensus 266 ~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~t~~d~~~i~~~~DFlGiNyYts~~v~~~~~~~ 345 (497)
T PLN02998 266 VPLTNSVKDKQATARVNDFYIGWILHPLVFGDYPETMKTNVGSRLPAFTEEESEQVKGAFDFVGVINYMALYVKDNSSSL 345 (497)
T ss_pred ecCCCCHHHHHHHHHHHHHHhhhhhhHHhCCCcCHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEchhcCcccccCCCcC
Confidence 4455566666666666667889999999999999999999999999997633211
Q ss_pred ccCCCCCCCCccccc--cccCCCCCC-CCCchHHHHHHHHHHHHcCCCCEEEEeCCCCCCC---h-hhhhhhhhhh
Q 009558 456 KQKHRDWSADTATKF--FFKQDTAAS-SNEPSSLQIVLEYFKQVYGNPPIYIHENGSLSLS---L-SIYLSIYLLM 524 (532)
Q Consensus 456 ~~~~~~~~~D~~v~~--~~~~~t~~G-eIyP~GLr~iL~~Ik~rYgn~PIyITENGig~~d---~-~~~~~~~~~~ 524 (532)
......+..+..... .......++ +|||+|||++|++++++|+++||||||||++..+ + |++|-.||-+
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~~g~v~D~~Ri~Yl~~ 421 (497)
T PLN02998 346 KPNLQDFNTDIAVEMTLVGNTSIENEYANTPWSLQQILLYVKETYGNPPVYILENGQMTPHSSSLVDTTRVKYLSS 421 (497)
T ss_pred CCCccccccccccccccCCCcCCCCCCEEChHHHHHHHHHHHHHcCCCCEEEeCCCCccCCCCcccCHHHHHHHHH
Confidence 100000111111100 011111355 9999999999999999999889999999999753 3 3344445443
No 5
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=100.00 E-value=7.3e-71 Score=588.41 Aligned_cols=261 Identities=48% Similarity=0.839 Sum_probs=212.3
Q ss_pred cCCCCCCcEEeeeechhhhcCccCCCCCCCccceeccccCcc---CCCCccCCccccccHHHHHHHHHcCCCEEEecccc
Q 009558 263 KNDFPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFAHAGNV---LGNGDIACDEYHKYKEDVKLMAKTGLDAYRFSISW 339 (532)
Q Consensus 263 ~~~FP~dFlwG~ATSA~QvEGa~~~dGkg~SiWD~~~~~~~~---g~~~dva~D~YhrYkEDI~Lm~elGv~ayRFSIsW 339 (532)
+.+||++|+||+|||||||||++++|||++|+||.|++.+.. +.++++||||||||+|||+||++||+++|||||+|
T Consensus 2 ~~~fp~~F~wG~atsa~Q~EG~~~~dGkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~lg~~~yRfsi~W 81 (455)
T PF00232_consen 2 SKKFPEDFLWGVATSAYQIEGAWNEDGKGPSIWDTFCHEPGKVEDGSTGDVACDHYHRYKEDIALMKELGVNAYRFSISW 81 (455)
T ss_dssp GGGS-TT-EEEEE--HHHHSSSTTSTTSTTBHHHHHHHSTTSSTTSSSSSSTTGHHHHHHHHHHHHHHHT-SEEEEE--H
T ss_pred CCCCCCCCeEEEeceeccccceecCCCCCcccccccccccceeeccccCcccccchhhhhHHHHHHHhhccceeeeecch
Confidence 457999999999999999999999999999999999987432 67799999999999999999999999999999999
Q ss_pred cccccCC-CCCCChhHHHHHHHHHHHHHHCCCeeEEEeccCCcchhHHhhhCCccccceE--------------------
Q 009558 340 SRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLHHSDLPQALEDEYGGWINRMIV-------------------- 398 (532)
Q Consensus 340 sRI~P~G-~G~vN~~Gi~~Y~~lId~L~~~GIePiVTL~HfdlP~~L~d~~GGW~n~~~v-------------------- 398 (532)
+||+|+| .|.+|++|++||+++|++|+++||+|||||||||+|+||++ +|||+|++++
T Consensus 82 ~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~-~ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~ 160 (455)
T PF00232_consen 82 SRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLED-YGGWLNRETVDWFARYAEFVFERFGDRVKY 160 (455)
T ss_dssp HHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHH-HTGGGSTHHHHHHHHHHHHHHHHHTTTBSE
T ss_pred hheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceee-cccccCHHHHHHHHHHHHHHHHHhCCCcce
Confidence 9999999 89999999999999999999999999999999999999998 7999999988
Q ss_pred --------------------------------------------------------------------------------
Q 009558 399 -------------------------------------------------------------------------------- 398 (532)
Q Consensus 399 -------------------------------------------------------------------------------- 398 (532)
T Consensus 161 w~T~NEp~~~~~~~y~~g~~~p~~~~~~~~~~~~h~~l~AHa~A~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~d~~~Aa 240 (455)
T PF00232_consen 161 WITFNEPNVFALLGYLYGGFPPGRDSLKAFYQAAHNLLLAHAKAVKAIKEKYPDGKIGIALNFSPFYPLSPSPEDDVAAA 240 (455)
T ss_dssp EEEEETHHHHHHHHHTSSSSTTCSSTHHHHHHHHHHHHHHHHHHHHHHHHHTCTSEEEEEEEEEEEEESSSSHHHHHHHH
T ss_pred EEeccccceeeccccccccccccccccchhhHHHhhHHHHHHHHHHHHhhcccceEEeccccccccCCCCccchhhHHHH
Confidence
Q ss_pred ----------EecccccCCCcchhhcccCCC--CCCCChhHHhhhcCCCceeeeecccceeeecCCCCcccCCCCCCCCc
Q 009558 399 ----------VANPLVYGDYPKIMKQNAGSR--LPAFTDHESQQIKGSADFIGVINYYTVYIKDNPSSLKQKHRDWSADT 466 (532)
Q Consensus 399 ----------FlDPi~~GdYP~~m~e~lGsr--LP~FT~eE~elIkgslDFLGINYYTs~~Vka~~~~~~~~~~~~~~D~ 466 (532)
|+||++.|+||..|++.++.+ +|.||++|++.|++++||||||||++.+|+..+..............
T Consensus 241 ~~~~~~~n~~f~dpi~~G~YP~~~~~~~~~~~~lp~ft~ed~~~ikg~~DFlGiNYYt~~~v~~~~~~~~~~~~~~~~~~ 320 (455)
T PF00232_consen 241 ERADEFHNGWFLDPIFKGDYPEEMKEYLGERGILPEFTEEDKELIKGSIDFLGINYYTSRYVRADPNPSSPPSYDSDAPF 320 (455)
T ss_dssp HHHHHHHTHHHHHHHHHSSSEHHHHHHHGGGTSSTTSGHHHHHHHTTTTSEEEEEESEEEEEEESSSSTSSTTHEEEESE
T ss_pred HHHHHHhhcccccCchhhcCChHHhhccccccccccccchhhhcccccchhhhhccccceeeccCccccccccccCCccc
Confidence 999999999999999998877 99999999999999999999999999999987632211000000000
Q ss_pred ccc-ccccCCCCCC-CCCchHHHHHHHHHHHHcCCCCEEEEeCCCCCCCh-------hhhhhhhhhh
Q 009558 467 ATK-FFFKQDTAAS-SNEPSSLQIVLEYFKQVYGNPPIYIHENGSLSLSL-------SIYLSIYLLM 524 (532)
Q Consensus 467 ~v~-~~~~~~t~~G-eIyP~GLr~iL~~Ik~rYgn~PIyITENGig~~d~-------~~~~~~~~~~ 524 (532)
... .+..+.+++| +++|+|||++|++++++|+++||||||||++..+. |+.|-.||-.
T Consensus 321 ~~~~~~~~~~t~~gw~i~P~Gl~~~L~~l~~~Y~~~pI~ITENG~~~~~~~~~~~v~D~~Ri~yl~~ 387 (455)
T PF00232_consen 321 GQPYNPGGPTTDWGWEIYPEGLRDVLRYLKDRYGNPPIYITENGIGDPDEVDDGKVDDDYRIDYLQD 387 (455)
T ss_dssp EEECETSSEBCTTSTBBETHHHHHHHHHHHHHHTSSEEEEEEE---EETTCTTSHBSHHHHHHHHHH
T ss_pred cccccccccccccCcccccchHhhhhhhhccccCCCcEEEecccccccccccccCcCcHHHHHHHHH
Confidence 000 1234567788 99999999999999999999999999999998774 4455555433
No 6
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=1.7e-69 Score=581.90 Aligned_cols=248 Identities=33% Similarity=0.559 Sum_probs=206.9
Q ss_pred cCCCCCCcEEeeeechhhhcCccCCCCCCCccceeccccCc-c--------------C--CCCccCCccccccHHHHHHH
Q 009558 263 KNDFPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFAHAGN-V--------------L--GNGDIACDEYHKYKEDVKLM 325 (532)
Q Consensus 263 ~~~FP~dFlwG~ATSA~QvEGa~~~dGkg~SiWD~~~~~~~-~--------------g--~~~dva~D~YhrYkEDI~Lm 325 (532)
..+||++|+||+|||||||||++++|||++|+||.|++.+. . + .++++||||||||+|||+||
T Consensus 3 ~~~fP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~d~Yhry~eDi~Lm 82 (478)
T PRK09593 3 KMPFPKGFLWGGATAANQCEGAYNVDGRGLANVDVVPIGEDRFPIITGEKKMFDFEEGYFYPAKEAIDMYHHYKEDIALF 82 (478)
T ss_pred cccCCCCCEEeeechHHHhCCCcCCCCCccchhhccccCcCcccccccccccccccccccCCCCcccchHHhhHHHHHHH
Confidence 35699999999999999999999999999999999887321 1 1 15789999999999999999
Q ss_pred HHcCCCEEEecccccccccCCC-CCCChhHHHHHHHHHHHHHHCCCeeEEEeccCCcchhHHhhhCCccccceE------
Q 009558 326 AKTGLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLHHSDLPQALEDEYGGWINRMIV------ 398 (532)
Q Consensus 326 ~elGv~ayRFSIsWsRI~P~G~-G~vN~~Gi~~Y~~lId~L~~~GIePiVTL~HfdlP~~L~d~~GGW~n~~~v------ 398 (532)
++||+|+|||||+||||+|+|. +.+|++|++||+++||+|+++||+|||||||||+|+||+++||||+|++++
T Consensus 83 ~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~~L~~~~GGW~n~~~v~~F~~Y 162 (478)
T PRK09593 83 AEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPMHLIEEYGGWRNRKMVGFYERL 162 (478)
T ss_pred HHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCHHHHhhcCCCCChHHHHHHHHH
Confidence 9999999999999999999985 569999999999999999999999999999999999999989999999887
Q ss_pred --------------------------------------------------------------------------------
Q 009558 399 -------------------------------------------------------------------------------- 398 (532)
Q Consensus 399 -------------------------------------------------------------------------------- 398 (532)
T Consensus 163 A~~~~~~fgdrVk~WiT~NEP~~~~~~~~~~~g~~~~~g~~~~~~~~~a~h~~llAHa~A~~~~~~~~~~g~VGi~~~~~ 242 (478)
T PRK09593 163 CRTLFTRYKGLVKYWLTFNEINMILHAPFMGAGLYFEEGENKEQVKYQAAHHELVASAIATKIAHEVDPENKVGCMLAAG 242 (478)
T ss_pred HHHHHHHhcCcCCEEEeecchhhhhcccccccCcccCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence
Q ss_pred ------------------------EecccccCCCcchhhcccCC--CCCCCChhHHhhhc-CCCceeeeecccceeeecC
Q 009558 399 ------------------------VANPLVYGDYPKIMKQNAGS--RLPAFTDHESQQIK-GSADFIGVINYYTVYIKDN 451 (532)
Q Consensus 399 ------------------------FlDPi~~GdYP~~m~e~lGs--rLP~FT~eE~elIk-gslDFLGINYYTs~~Vka~ 451 (532)
|+||++.|+||+.|++.++. .+|.||++|+++|+ +++|||||||||+.+|+..
T Consensus 243 ~~~P~~~~~~D~~aa~~~~~~~~~fld~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~ik~g~~DFlGiNyYt~~~v~~~ 322 (478)
T PRK09593 243 QYYPNTCHPEDVWAAMKEDRENYFFIDVQARGEYPNYAKKRFEREGITIEMTEEDLELLKENTVDFISFSYYSSRVASGD 322 (478)
T ss_pred eeEeCCCCHHHHHHHHHHHHHhhhhhhhhhCCCccHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCEEEEecccCcccccC
Confidence 56777778888877776654 35789999999996 8999999999999999853
Q ss_pred CCCcccCCCCCCCCccccccccCCCCCC-CCCchHHHHHHHHHHHHcCCCCEEEEeCCCCCCC
Q 009558 452 PSSLKQKHRDWSADTATKFFFKQDTAAS-SNEPSSLQIVLEYFKQVYGNPPIYIHENGSLSLS 513 (532)
Q Consensus 452 ~~~~~~~~~~~~~D~~v~~~~~~~t~~G-eIyP~GLr~iL~~Ik~rYgn~PIyITENGig~~d 513 (532)
+........... .....+....+++| +|||+|||++|++++++|++ ||||||||+|..+
T Consensus 323 ~~~~~~~~~~~~--~~~~~p~~~~~~~gw~i~P~Gl~~~l~~~~~~Y~~-Pi~ItENG~~~~d 382 (478)
T PRK09593 323 PKVNEKTAGNIF--ASLKNPYLKASEWGWQIDPLGLRITLNTIWDRYQK-PMFIVENGLGAVD 382 (478)
T ss_pred CCCCCCCCCCcc--ccccCCCcccCCCCCEECHHHHHHHHHHHHHHcCC-CEEEEcCCCCCCC
Confidence 311100000000 00111233456788 99999999999999999974 8999999999644
No 7
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.9e-69 Score=568.18 Aligned_cols=260 Identities=38% Similarity=0.617 Sum_probs=220.3
Q ss_pred CCCCCCcEEeeeechhhhcCccCCCCCCCccceeccccC---cc--CCCCccCCccccccHHHHHHHHHcCCCEEEeccc
Q 009558 264 NDFPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFAHAG---NV--LGNGDIACDEYHKYKEDVKLMAKTGLDAYRFSIS 338 (532)
Q Consensus 264 ~~FP~dFlwG~ATSA~QvEGa~~~dGkg~SiWD~~~~~~---~~--g~~~dva~D~YhrYkEDI~Lm~elGv~ayRFSIs 338 (532)
.+||++|+||+||||+|+||++++|||++|+||.|++.. .. +.++++|+||||||+|||+||+|||+|+|||||+
T Consensus 2 ~~FPkdFlWG~AtAa~Q~EGa~~~dGkg~s~wD~~~~~~~~~~~~~~~~~~~a~d~YhrYkeDi~L~~emG~~~~R~SI~ 81 (460)
T COG2723 2 LKFPKDFLWGGATAAFQVEGAWNEDGKGPSDWDVWVHDEIPGRLVSGDPPEEASDFYHRYKEDIALAKEMGLNAFRTSIE 81 (460)
T ss_pred CCCCCCCeeecccccccccCCcCCCCCCCeeeeeeeccccCCcccCCCCCccccchhhhhHHHHHHHHHcCCCEEEeeee
Confidence 579999999999999999999999999999999999843 22 7889999999999999999999999999999999
Q ss_pred ccccccCCCC-CCChhHHHHHHHHHHHHHHCCCeeEEEeccCCcchhHHhhhCCccccceE-------------------
Q 009558 339 WSRLIPNGRG-PVNPKGLQYYNNLINELISYGIQPHVTLHHSDLPQALEDEYGGWINRMIV------------------- 398 (532)
Q Consensus 339 WsRI~P~G~G-~vN~~Gi~~Y~~lId~L~~~GIePiVTL~HfdlP~~L~d~~GGW~n~~~v------------------- 398 (532)
||||+|+|.+ ++|++|++||+++||+|+++||+|+|||||||+|+||+++||||+||++|
T Consensus 82 WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~Hfd~P~~L~~~ygGW~nR~~i~~F~~ya~~vf~~f~dkVk 161 (460)
T COG2723 82 WSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLYHFDLPLWLQKPYGGWENRETVDAFARYAATVFERFGDKVK 161 (460)
T ss_pred EEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecccCCcHHHhhccCCccCHHHHHHHHHHHHHHHHHhcCcce
Confidence 9999999876 99999999999999999999999999999999999999999999999988
Q ss_pred --------------------------------------------------------------------------------
Q 009558 399 -------------------------------------------------------------------------------- 398 (532)
Q Consensus 399 -------------------------------------------------------------------------------- 398 (532)
T Consensus 162 ~W~TFNE~n~~~~~~y~~~~~~p~~~~~~~~~qa~hh~~lA~A~avk~~~~~~~~~kIG~~~~~~p~YP~s~~p~dv~aA 241 (460)
T COG2723 162 YWFTFNEPNVVVELGYLYGGHPPGIVDPKAAYQVAHHMLLAHALAVKAIKKINPKGKVGIILNLTPAYPLSDKPEDVKAA 241 (460)
T ss_pred EEEEecchhhhhcccccccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcCceEEEeccCcCCCCCCCHHHHHHH
Confidence
Q ss_pred ----------EecccccCCCcchhhcccCCC--CCCCChhHHhhhcC-CCceeeeecccc-eeeecCCCCcc-cCCCCCC
Q 009558 399 ----------VANPLVYGDYPKIMKQNAGSR--LPAFTDHESQQIKG-SADFIGVINYYT-VYIKDNPSSLK-QKHRDWS 463 (532)
Q Consensus 399 ----------FlDPi~~GdYP~~m~e~lGsr--LP~FT~eE~elIkg-slDFLGINYYTs-~~Vka~~~~~~-~~~~~~~ 463 (532)
|+||.++|+||..+.+.+... +|.++++|+++|++ ++||||+|||++ +++++.+.... ......
T Consensus 242 ~~~~~~~n~~FlD~~~~G~yp~~~~~~~~~~~~~~~~~~~Dl~~lk~~~~DfiG~NYY~~s~v~~~~~~~~~~~~~~~~- 320 (460)
T COG2723 242 ENADRFHNRFFLDAQVKGEYPEYLEKELEENGILPEIEDGDLEILKENTVDFIGLNYYTPSRVKAAEPRYVSGYGPGGF- 320 (460)
T ss_pred HHHHHHhhhhhcchhhcCcCCHHHHHHHHhcCCCcccCcchHHHHhcCCCCeEEEeeeeeeeEeeccCCcCCccccccc-
Confidence 889999999998877666433 68999999999998 589999999995 44444332110 000000
Q ss_pred CCccccccccCCCCCC-CCCchHHHHHHHHHHHHcCCCCEEEEeCCCCCCCh-------hhhhhhhhhhhh
Q 009558 464 ADTATKFFFKQDTAAS-SNEPSSLQIVLEYFKQVYGNPPIYIHENGSLSLSL-------SIYLSIYLLMLL 526 (532)
Q Consensus 464 ~D~~v~~~~~~~t~~G-eIyP~GLr~iL~~Ik~rYgn~PIyITENGig~~d~-------~~~~~~~~~~~~ 526 (532)
-..+.++.++.++|| +|||+|||.+|+.+++||+ +||||||||+|+.|. |++|=.||-+-|
T Consensus 321 -~~~~~~p~~~~sdwGWeI~P~GL~~~l~~~~~rY~-~p~fItENG~G~~d~~~~~~i~DdyRI~Yl~~Hl 389 (460)
T COG2723 321 -FTSVPNPGLEVSDWGWEIYPKGLYDILEKLYERYG-IPLFITENGLGVKDEVDFDGINDDYRIDYLKEHL 389 (460)
T ss_pred -ccccCCCCCcccCCCceeChHHHHHHHHHHHHHhC-CCeEEecCCCCcccccccCCcCchHHHHHHHHHH
Confidence 112334566777999 9999999999999999998 999999999997543 356666665544
No 8
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=100.00 E-value=1.2e-68 Score=574.15 Aligned_cols=247 Identities=34% Similarity=0.560 Sum_probs=206.9
Q ss_pred CCCCCCcEEeeeechhhhcCccCCCCCCCccceeccccCccCCCCccCCccccccHHHHHHHHHcCCCEEEecccccccc
Q 009558 264 NDFPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFAHAGNVLGNGDIACDEYHKYKEDVKLMAKTGLDAYRFSISWSRLI 343 (532)
Q Consensus 264 ~~FP~dFlwG~ATSA~QvEGa~~~dGkg~SiWD~~~~~~~~g~~~dva~D~YhrYkEDI~Lm~elGv~ayRFSIsWsRI~ 343 (532)
.+||++|+||+|||||||||++++|||++|+||.|++... ..++++||||||||+|||+||++||+++|||||+||||+
T Consensus 3 ~~fP~~FlwG~Atsa~QiEG~~~~~Gkg~siwD~~~~~~~-~~~~~~a~d~Y~ry~eDi~L~~~lG~~~yRfSIsWsRI~ 81 (469)
T PRK13511 3 KTLPKDFIFGGATAAYQAEGATKTDGKGPVAWDKYLEENY-WFTPDPASDFYHRYPEDLKLAEEFGVNGIRISIAWSRIF 81 (469)
T ss_pred CCCCCCCEEEeechHhhhcCCcCCCCCccchhhcccccCC-CCCCCcccchhhhhHHHHHHHHHhCCCEEEeeccHhhcC
Confidence 4599999999999999999999999999999999987432 237899999999999999999999999999999999999
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHCCCeeEEEeccCCcchhHHhhhCCccccceE-------------------------
Q 009558 344 PNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHSDLPQALEDEYGGWINRMIV------------------------- 398 (532)
Q Consensus 344 P~G~G~vN~~Gi~~Y~~lId~L~~~GIePiVTL~HfdlP~~L~d~~GGW~n~~~v------------------------- 398 (532)
|+|.|.+|++|++||+++||+|+++||+|+|||||||+|+||+++ |||+|++++
T Consensus 82 P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~~~~fgdVk~W~T~NE 160 (469)
T PRK13511 82 PDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPEALHSN-GDWLNRENIDHFVRYAEFCFEEFPEVKYWTTFNE 160 (469)
T ss_pred cCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCCCCEEEEccc
Confidence 999899999999999999999999999999999999999999986 999999876
Q ss_pred --------------------------------------------------------------------------------
Q 009558 399 -------------------------------------------------------------------------------- 398 (532)
Q Consensus 399 -------------------------------------------------------------------------------- 398 (532)
T Consensus 161 P~~~~~~gy~~G~~~Pg~~~~~~~~~~~~hn~llAHa~A~~~~~~~~~~g~IGi~~~~~~~~P~~~~~~~d~~aa~~~~~ 240 (469)
T PRK13511 161 IGPIGDGQYLVGKFPPGIKYDLAKVFQSHHNMMVAHARAVKLFKDKGYKGEIGVVHALPTKYPIDPDNPEDVRAAELEDI 240 (469)
T ss_pred hhhhhhcchhhcccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCceEeeCCCCCHHHHHHHHHHHH
Confidence
Q ss_pred -----EecccccCCCcchhhccc-------CCCCCCCChhHHhhhcC---CCceeeeecccceeeecCCCCccc--CCCC
Q 009558 399 -----VANPLVYGDYPKIMKQNA-------GSRLPAFTDHESQQIKG---SADFIGVINYYTVYIKDNPSSLKQ--KHRD 461 (532)
Q Consensus 399 -----FlDPi~~GdYP~~m~e~l-------GsrLP~FT~eE~elIkg---slDFLGINYYTs~~Vka~~~~~~~--~~~~ 461 (532)
|+||++.|+||+.|++.+ +.++ .||++|+++|++ ++||||||||++.+|+..+..... ....
T Consensus 241 ~~~~~f~dp~~~G~Yp~~~~~~~~~~~~~~~~~l-~~t~~d~~~ik~~~~~~DFiGiNyYt~~~v~~~~~~~~~~~~~~~ 319 (469)
T PRK13511 241 IHNKFILDATYLGYYSEETMEGVNHILEANGGSL-DIRDEDFEILKAAKDLNDFLGINYYMSDWMRAYDGETEIIHNGTG 319 (469)
T ss_pred HhhhcccchhhCCCCCHHHHHHHHHhhhhcCCCC-CCCHHHHHHHhcCCCCCCEEEechhhcceeecCCCccccccCCCC
Confidence 778999999999988755 3334 799999999974 589999999999999853211000 0000
Q ss_pred C-----CCCcc----ccccccCCCCCC-CCCchHHHHHHHHHHHHcCC-CCEEEEeCCCCCCC
Q 009558 462 W-----SADTA----TKFFFKQDTAAS-SNEPSSLQIVLEYFKQVYGN-PPIYIHENGSLSLS 513 (532)
Q Consensus 462 ~-----~~D~~----v~~~~~~~t~~G-eIyP~GLr~iL~~Ik~rYgn-~PIyITENGig~~d 513 (532)
. ....+ ...+..+.+.+| +|||+||+++|++++++|++ +||||||||+|..+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~gw~i~P~Gl~~~l~~~~~~Y~~~~pi~ITENG~~~~d 382 (469)
T PRK13511 320 EKGSSKYQLKGVGERVKPPDVPTTDWDWIIYPQGLYDQLMRIKKDYPNYKKIYITENGLGYKD 382 (469)
T ss_pred ccccccccccCccccccCCCCCcCCCCCeECcHHHHHHHHHHHHHcCCCCCEEEecCCcCCCC
Confidence 0 00000 111123456688 99999999999999999987 68999999999543
No 9
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=1.5e-68 Score=574.32 Aligned_cols=245 Identities=31% Similarity=0.563 Sum_probs=198.7
Q ss_pred CCCCCcEEeeeechhhhcCccCCCCCCCccceeccc---c-Cc-c------CC--CCccCCccccccHHHHHHHHHcCCC
Q 009558 265 DFPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFAH---A-GN-V------LG--NGDIACDEYHKYKEDVKLMAKTGLD 331 (532)
Q Consensus 265 ~FP~dFlwG~ATSA~QvEGa~~~dGkg~SiWD~~~~---~-~~-~------g~--~~dva~D~YhrYkEDI~Lm~elGv~ 331 (532)
+||++|+||+|||||||||++++|||++|+||.|++ . +. . +. ++++||||||||+|||+||++||+|
T Consensus 3 ~fP~~FlwG~AtsA~QiEGa~~~~gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~a~D~Yhry~eDi~Lm~~lG~~ 82 (476)
T PRK09589 3 GFKKGFLWGGAVAAHQLEGGWNEGGKGISVADVMTAGAHGVPREITEGVIEGKNYPNHEAIDFYHRYKEDIALFAEMGFK 82 (476)
T ss_pred CCCCCCEEeeechHhhhcCCcCCCCCCCchhcccccccccCccccccCccCCCcCCCcccccHHHhhHHHHHHHHHcCCC
Confidence 599999999999999999999999999999999983 1 11 1 11 4789999999999999999999999
Q ss_pred EEEecccccccccCCC-CCCChhHHHHHHHHHHHHHHCCCeeEEEeccCCcchhHHhhhCCccccceE------------
Q 009558 332 AYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLHHSDLPQALEDEYGGWINRMIV------------ 398 (532)
Q Consensus 332 ayRFSIsWsRI~P~G~-G~vN~~Gi~~Y~~lId~L~~~GIePiVTL~HfdlP~~L~d~~GGW~n~~~v------------ 398 (532)
+|||||+||||+|+|. +.+|++|++||+++|++|+++||+|||||||||+|+||+++||||+|++++
T Consensus 83 ~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~ 162 (476)
T PRK09589 83 CFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPYHLVTEYGGWRNRKLIDFFVRFAEVVFT 162 (476)
T ss_pred EEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCHHHHHhcCCcCChHHHHHHHHHHHHHHH
Confidence 9999999999999985 468999999999999999999999999999999999999999999999887
Q ss_pred -----------Eecc-----------------------------------------------------------------
Q 009558 399 -----------VANP----------------------------------------------------------------- 402 (532)
Q Consensus 399 -----------FlDP----------------------------------------------------------------- 402 (532)
||||
T Consensus 163 ~fgdrVk~WiT~NEp~~~~~~~~~~~~~~~~g~~~~pg~~~~~~~~~~~h~~llAha~A~~~~~~~~~~~~iG~~~~~~~ 242 (476)
T PRK09589 163 RYKDKVKYWMTFNEINNQANFSEDFAPFTNSGILYSPGEDREQIMYQAAHYELVASALAVKTGHEINPDFQIGCMIAMCP 242 (476)
T ss_pred HhcCCCCEEEEecchhhhhccccccCCccccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEeCCe
Confidence 4444
Q ss_pred ---------------------------cccCCCcchhhcccCCC--CCCCChhHHhhh-cCCCceeeeecccceeeecCC
Q 009558 403 ---------------------------LVYGDYPKIMKQNAGSR--LPAFTDHESQQI-KGSADFIGVINYYTVYIKDNP 452 (532)
Q Consensus 403 ---------------------------i~~GdYP~~m~e~lGsr--LP~FT~eE~elI-kgslDFLGINYYTs~~Vka~~ 452 (532)
++.|+||+.|++.++++ .|.||++|+++| ++++||||||||++.+|+...
T Consensus 243 ~~P~~~~~~d~~aa~~~~~~~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~t~~d~~~l~~g~~DFlGiNyYts~~v~~~~ 322 (476)
T PRK09589 243 IYPLTCAPNDMMMATKAMHRRYWFTDVHVRGYYPQHILNYFARKGFNLDITPEDNAILAEGCVDYIGFSYYMSFATKFHE 322 (476)
T ss_pred eeeCCCCHHHHHHHHHHHHhccceecceeCCCCcHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCEEEEecccCcccccCC
Confidence 44444444444444332 367899999988 689999999999999997532
Q ss_pred CCcccCCCCCCCCc-cccccccCCCCCC-CCCchHHHHHHHHHHHHcCCCCEEEEeCCCCCCC
Q 009558 453 SSLKQKHRDWSADT-ATKFFFKQDTAAS-SNEPSSLQIVLEYFKQVYGNPPIYIHENGSLSLS 513 (532)
Q Consensus 453 ~~~~~~~~~~~~D~-~v~~~~~~~t~~G-eIyP~GLr~iL~~Ik~rYgn~PIyITENGig~~d 513 (532)
..+. .....+. ....+....+++| +|||+|||++|++++++|+ .||||||||+|..+
T Consensus 323 ~~~~---~~~~~~~~~~~~~~~~~~~~gw~i~P~Gl~~~L~~~~~~Y~-~Pi~ItENG~~~~d 381 (476)
T PRK09589 323 DNPQ---LDYVETRDLVSNPYVKASEWGWQIDPAGLRYSLNWFWDHYQ-LPLFIVENGFGAID 381 (476)
T ss_pred CCCC---CCcccccccccCCCcccCCCCCccCcHHHHHHHHHHHHhcC-CCEEEEeCCcccCC
Confidence 1110 0000000 1111233456788 9999999999999999997 58999999999644
No 10
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=100.00 E-value=1.7e-68 Score=572.90 Aligned_cols=260 Identities=30% Similarity=0.472 Sum_probs=213.2
Q ss_pred CCCCCCcEEeeeechhhhcCccCCCCCCCccceeccccCccCCCCccCCccccccHHHHHHHHHcCCCEEEecccccccc
Q 009558 264 NDFPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFAHAGNVLGNGDIACDEYHKYKEDVKLMAKTGLDAYRFSISWSRLI 343 (532)
Q Consensus 264 ~~FP~dFlwG~ATSA~QvEGa~~~dGkg~SiWD~~~~~~~~g~~~dva~D~YhrYkEDI~Lm~elGv~ayRFSIsWsRI~ 343 (532)
.+||+||+||+|||||||||+++++||++|+||.+++... ..++++||||||||+|||+||++||+++|||||+||||+
T Consensus 2 ~~fP~~FlwG~AtsA~QvEG~~~~~Gkg~siwD~~~~~~~-~~~~~~a~d~yhry~eDi~L~~~lG~~~yRfSIsWsRI~ 80 (467)
T TIGR01233 2 KTLPKDFIFGGATAAYQAEGATHTDGKGPVAWDKYLEDNY-WYTAEPASDFYHKYPVDLELAEEYGVNGIRISIAWSRIF 80 (467)
T ss_pred CCCCCCCEEeeechhhhcCCCcCCCCCcCchhhccccCCC-CCCCCccCchhhhHHHHHHHHHHcCCCEEEEecchhhcc
Confidence 3599999999999999999999999999999999886422 246789999999999999999999999999999999999
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHCCCeeEEEeccCCcchhHHhhhCCccccceE-------------------------
Q 009558 344 PNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHSDLPQALEDEYGGWINRMIV------------------------- 398 (532)
Q Consensus 344 P~G~G~vN~~Gi~~Y~~lId~L~~~GIePiVTL~HfdlP~~L~d~~GGW~n~~~v------------------------- 398 (532)
|+|.|.+|++|++||+++|++|+++||+|||||||||+|+||+++ |||+|++++
T Consensus 81 P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~f~~fgdVk~WiT~NE 159 (467)
T TIGR01233 81 PTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPEALHSN-GDFLNRENIEHFIDYAAFCFEEFPEVNYWTTFNE 159 (467)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCCCCEEEEecc
Confidence 999899999999999999999999999999999999999999986 999999887
Q ss_pred --------------------------------------------------------------------------------
Q 009558 399 -------------------------------------------------------------------------------- 398 (532)
Q Consensus 399 -------------------------------------------------------------------------------- 398 (532)
T Consensus 160 P~~~~~~gy~~G~~~Pg~~~~~~~~~~a~hn~l~AHa~A~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~~D~~aA~~~~~ 239 (467)
T TIGR01233 160 IGPIGDGQYLVGKFPPGIKYDLAKVFQSHHNMMVSHARAVKLYKDKGYKGEIGVVHALPTKYPYDPENPADVRAAELEDI 239 (467)
T ss_pred hhhhhhccchhcccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCceeEECCCCCHHHHHHHHHHHH
Confidence
Q ss_pred -----EecccccCCCcchhhcccCC----C--CCCCChhHHhhh---cCCCceeeeecccceeeecCCCCccc----C--
Q 009558 399 -----VANPLVYGDYPKIMKQNAGS----R--LPAFTDHESQQI---KGSADFIGVINYYTVYIKDNPSSLKQ----K-- 458 (532)
Q Consensus 399 -----FlDPi~~GdYP~~m~e~lGs----r--LP~FT~eE~elI---kgslDFLGINYYTs~~Vka~~~~~~~----~-- 458 (532)
|+||++.|+||+.|++.++. + .|.||++|+++| +++.||||||||++.+|+........ .
T Consensus 240 ~~~~~f~d~~~~G~Yp~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~DFlGinyYt~~~v~~~~~~~~~~~~~~~~ 319 (467)
T TIGR01233 240 IHNKFILDATYLGHYSDKTMEGVNHILAENGGELDLRDEDFQALDAAKDLNDFLGINYYMSDWMQAFDGETEIIHNGKGE 319 (467)
T ss_pred HhhhcccchhhCCCCCHHHHHHHHhhhhccCCCCCCCHHHHHHHhccCCCCCEEEEccccceeeccCCCccccccCCccc
Confidence 77888899999988876642 2 367999999999 58999999999999999853111000 0
Q ss_pred -CCCCCCCcc----ccccccCCCCCC-CCCchHHHHHHHHHHHHcCC-CCEEEEeCCCCCCCh-------hhhhhhhhhh
Q 009558 459 -HRDWSADTA----TKFFFKQDTAAS-SNEPSSLQIVLEYFKQVYGN-PPIYIHENGSLSLSL-------SIYLSIYLLM 524 (532)
Q Consensus 459 -~~~~~~D~~----v~~~~~~~t~~G-eIyP~GLr~iL~~Ik~rYgn-~PIyITENGig~~d~-------~~~~~~~~~~ 524 (532)
........+ ......+.+.|| +|||+|||++|++++++|++ +||||||||+|..+. |++|-.||-+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~t~~gw~i~P~Gl~~~L~~~~~~Y~~~ppi~ItENG~~~~d~~~~g~i~D~~Ri~Yl~~ 399 (467)
T TIGR01233 320 KGSSKYQIKGVGRRVAPDYVPRTDWDWIIYPEGLYDQIMRVKNDYPNYKKIYITENGLGYKDEFVDNTVYDDGRIDYVKQ 399 (467)
T ss_pred cCcccccCCCcccccCCCCCCcCCCCCeeChHHHHHHHHHHHHHcCCCCCEEEeCCCCCCCCCCCCCccCCHHHHHHHHH
Confidence 000000000 011122456788 99999999999999999986 679999999997541 3455555544
Q ss_pred h
Q 009558 525 L 525 (532)
Q Consensus 525 ~ 525 (532)
-
T Consensus 400 h 400 (467)
T TIGR01233 400 H 400 (467)
T ss_pred H
Confidence 3
No 11
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=100.00 E-value=5.9e-68 Score=569.85 Aligned_cols=248 Identities=30% Similarity=0.553 Sum_probs=200.1
Q ss_pred CcCCCCCCcEEeeeechhhhcCccCCCCCCCccceecc---cc--Ccc------C--CCCccCCccccccHHHHHHHHHc
Q 009558 262 TKNDFPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFA---HA--GNV------L--GNGDIACDEYHKYKEDVKLMAKT 328 (532)
Q Consensus 262 ~~~~FP~dFlwG~ATSA~QvEGa~~~dGkg~SiWD~~~---~~--~~~------g--~~~dva~D~YhrYkEDI~Lm~el 328 (532)
.+.+||++|+||+|||||||||++++|||++|+||.|+ +. +.. + .++++||||||||+|||+||++|
T Consensus 2 ~~~~FP~~FlwG~AtsA~QiEGa~~e~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~EDI~Lm~el 81 (477)
T PRK15014 2 KKLTLPKDFLWGGAVAAHQVEGGWNKGGKGPSICDVLTGGAHGVPREITKEVVPGKYYPNHEAVDFYGHYKEDIKLFAEM 81 (477)
T ss_pred CcCCCCCCCEEeeecHHHHhCCCcCCCCCcccHhhccccccccCccccccccccCCcCCCCcccCcccccHHHHHHHHHc
Confidence 45779999999999999999999999999999999998 31 111 2 26789999999999999999999
Q ss_pred CCCEEEecccccccccCCC-CCCChhHHHHHHHHHHHHHHCCCeeEEEeccCCcchhHHhhhCCccccceE---------
Q 009558 329 GLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLHHSDLPQALEDEYGGWINRMIV--------- 398 (532)
Q Consensus 329 Gv~ayRFSIsWsRI~P~G~-G~vN~~Gi~~Y~~lId~L~~~GIePiVTL~HfdlP~~L~d~~GGW~n~~~v--------- 398 (532)
|+|+|||||+|+||+|+|. +.+|++|++||+++|++|+++||+|+|||||||+|+||+++||||+|++++
T Consensus 82 G~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP~~L~~~yGGW~n~~~~~~F~~Ya~~ 161 (477)
T PRK15014 82 GFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLHLVQQYGSWTNRKVVDFFVRFAEV 161 (477)
T ss_pred CCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCChHHHHHHHHHHHH
Confidence 9999999999999999985 568999999999999999999999999999999999999999999999877
Q ss_pred --------------Eeccc-------------------------------------------------------------
Q 009558 399 --------------VANPL------------------------------------------------------------- 403 (532)
Q Consensus 399 --------------FlDPi------------------------------------------------------------- 403 (532)
||||.
T Consensus 162 ~f~~fgdrVk~WiT~NEp~~~~~~~~~~~gy~~~g~~~~~~~~~~~~~~~~~h~~llAHa~A~~~~~~~~~~~~IGi~~~ 241 (477)
T PRK15014 162 VFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHENPEETMYQVLHHQFVASALAVKAARRINPEMKVGCMLA 241 (477)
T ss_pred HHHHhcCcCCEEEEecCcccccccccccccccccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 55554
Q ss_pred -------------------------------ccCCCcchhhcccCCCC--CCCChhHHhhh-cCCCceeeeecccceeee
Q 009558 404 -------------------------------VYGDYPKIMKQNAGSRL--PAFTDHESQQI-KGSADFIGVINYYTVYIK 449 (532)
Q Consensus 404 -------------------------------~~GdYP~~m~e~lGsrL--P~FT~eE~elI-kgslDFLGINYYTs~~Vk 449 (532)
+.|+||+.|++.++++. |.++++|+++| ++++|||||||||+.+|+
T Consensus 242 ~~~~~P~~~~~~D~~Aa~~~~~~~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~i~~~~~DFlGiNyYt~~~v~ 321 (477)
T PRK15014 242 MVPLYPYSCNPDDVMFAQESMRERYVFTDVQLRGYYPSYVLNEWERRGFNIKMEDGDLDVLREGTCDYLGFSYYMTNAVK 321 (477)
T ss_pred CceeccCCCCHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCEEEEcceeCeeec
Confidence 33444444443333332 67888999988 589999999999999997
Q ss_pred cCCCCcccCCCCCCCCccccccccCCCCCC-CCCchHHHHHHHHHHHHcCCCCEEEEeCCCCCCC
Q 009558 450 DNPSSLKQKHRDWSADTATKFFFKQDTAAS-SNEPSSLQIVLEYFKQVYGNPPIYIHENGSLSLS 513 (532)
Q Consensus 450 a~~~~~~~~~~~~~~D~~v~~~~~~~t~~G-eIyP~GLr~iL~~Ik~rYgn~PIyITENGig~~d 513 (532)
..+.... ....+. ...+.+....+++| +|||+|||++|++++++|+ +||||||||+|..+
T Consensus 322 ~~~~~~~-~~~~~~--~~~~~~~~~~~~~gw~i~P~Gl~~~l~~~~~~Y~-~Pi~ItENG~~~~d 382 (477)
T PRK15014 322 AEGGTGD-AISGFE--GSVPNPYVKASDWGWQIDPVGLRYALCELYERYQ-KPLFIVENGFGAYD 382 (477)
T ss_pred cCCCCCC-Cccccc--cccCCCCcccCCCCCccCcHHHHHHHHHHHHhcC-CCEEEeCCCCCCCC
Confidence 5321100 000000 01111233456788 9999999999999999997 58999999999644
No 12
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=100.00 E-value=1.4e-66 Score=558.78 Aligned_cols=246 Identities=30% Similarity=0.505 Sum_probs=207.9
Q ss_pred CCCCCcEEeeeechhhhcCccCCCCCCCccceeccccCc-c--------------C--CCCccCCccccccHHHHHHHHH
Q 009558 265 DFPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFAHAGN-V--------------L--GNGDIACDEYHKYKEDVKLMAK 327 (532)
Q Consensus 265 ~FP~dFlwG~ATSA~QvEGa~~~dGkg~SiWD~~~~~~~-~--------------g--~~~dva~D~YhrYkEDI~Lm~e 327 (532)
+||++|+||+|||||||||++++|||++|+||.|++.+. . + .++++||||||||+|||+||++
T Consensus 3 ~FP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~eDi~l~~~ 82 (474)
T PRK09852 3 VFPEGFLWGGALAANQSEGAFREGGKGLTTVDMIPHGEHRMAVKLGLEKRFQLRDDEFYPSHEAIDFYHRYKEDIALMAE 82 (474)
T ss_pred CCCCCCEEeccchHhhcCCCcCCCCCCCchhhccccCCCcccccccccccccccccCcCCCCccCchhhhhHHHHHHHHH
Confidence 599999999999999999999999999999999987321 1 1 1568899999999999999999
Q ss_pred cCCCEEEecccccccccCCC-CCCChhHHHHHHHHHHHHHHCCCeeEEEeccCCcchhHHhhhCCccccceE--------
Q 009558 328 TGLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLHHSDLPQALEDEYGGWINRMIV-------- 398 (532)
Q Consensus 328 lGv~ayRFSIsWsRI~P~G~-G~vN~~Gi~~Y~~lId~L~~~GIePiVTL~HfdlP~~L~d~~GGW~n~~~v-------- 398 (532)
||+|+|||||+|+||+|+|. +.+|++|++||+++|++|+++||+|||||||||+|+||+++||||+|++++
T Consensus 83 lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~~l~~~~GGW~~~~~~~~F~~ya~ 162 (474)
T PRK09852 83 MGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMHLVTEYGSWRNRKMVEFFSRYAR 162 (474)
T ss_pred cCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999985 468999999999999999999999999999999999999989999999877
Q ss_pred --------------------------------------------------------------------------------
Q 009558 399 -------------------------------------------------------------------------------- 398 (532)
Q Consensus 399 -------------------------------------------------------------------------------- 398 (532)
T Consensus 163 ~~~~~fgd~Vk~WiTfNEPn~~~~~gy~~~g~~~~p~~~~~~~~~~~~hn~llAHa~A~~~~~~~~~~~~IGi~~~~~~~ 242 (474)
T PRK09852 163 TCFEAFDGLVKYWLTFNEINIMLHSPFSGAGLVFEEGENQDQVKYQAAHHELVASALATKIAHEVNPQNQVGCMLAGGNF 242 (474)
T ss_pred HHHHHhcCcCCeEEeecchhhhhccCccccCcccCCCCCchHhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCee
Confidence
Q ss_pred ----------------------EecccccCCCcchhhcccCCC--CCCCChhHHhhhcCCCceeeeecccceeeecCCCC
Q 009558 399 ----------------------VANPLVYGDYPKIMKQNAGSR--LPAFTDHESQQIKGSADFIGVINYYTVYIKDNPSS 454 (532)
Q Consensus 399 ----------------------FlDPi~~GdYP~~m~e~lGsr--LP~FT~eE~elIkgslDFLGINYYTs~~Vka~~~~ 454 (532)
|+||++.|+||+.|++.++++ +|.||++|+++|++++||||||||++.+|+.....
T Consensus 243 ~P~~~~~~d~~AA~~~~~~~~~~~d~~~~G~YP~~~~~~~~~~~~~p~~~~~d~~~i~~~~DFlGiNyYt~~~v~~~~~~ 322 (474)
T PRK09852 243 YPYSCKPEDVWAALEKDRENLFFIDVQARGAYPAYSARVFREKGVTIDKAPGDDEILKNTVDFVSFSYYASRCASAEMNA 322 (474)
T ss_pred eeCCCCHHHHHHHHHHHHHhhhhcchhhCCCccHHHHHHHHhcCCCCCCCHHHHHHhcCCCCEEEEccccCeecccCCCC
Confidence 668888888888888877653 68999999999999999999999999999753211
Q ss_pred cccCCCCCCCCccccccccCCCCCC-CCCchHHHHHHHHHHHHcCCCCEEEEeCCCCCCC
Q 009558 455 LKQKHRDWSADTATKFFFKQDTAAS-SNEPSSLQIVLEYFKQVYGNPPIYIHENGSLSLS 513 (532)
Q Consensus 455 ~~~~~~~~~~D~~v~~~~~~~t~~G-eIyP~GLr~iL~~Ik~rYgn~PIyITENGig~~d 513 (532)
......... .....+....+++| +|+|+|||++|++++++|+ .||||||||+|..+
T Consensus 323 ~~~~~~~~~--~~~~~p~~~~~~~gw~i~P~Gl~~~l~~~~~~Y~-~Pi~ItENG~~~~d 379 (474)
T PRK09852 323 NNSSAANVV--KSLRNPYLQVSDWGWGIDPLGLRITMNMMYDRYQ-KPLFLVENGLGAKD 379 (474)
T ss_pred CCCCcCCce--ecccCCCcccCCCCCeeChHHHHHHHHHHHHhcC-CCEEEeCCCCCCCC
Confidence 000000000 01112334456788 9999999999999999997 58999999999654
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=100.00 E-value=4.4e-65 Score=540.99 Aligned_cols=250 Identities=45% Similarity=0.783 Sum_probs=215.7
Q ss_pred CCCCcEEeeeechhhhcCccCCCCCCCccceeccccCc-c--CCCCccCCccccccHHHHHHHHHcCCCEEEeccccccc
Q 009558 266 FPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFAHAGN-V--LGNGDIACDEYHKYKEDVKLMAKTGLDAYRFSISWSRL 342 (532)
Q Consensus 266 FP~dFlwG~ATSA~QvEGa~~~dGkg~SiWD~~~~~~~-~--g~~~dva~D~YhrYkEDI~Lm~elGv~ayRFSIsWsRI 342 (532)
||++|+||+||||||+||+++++||++|+||.+++.+. . +.++++||||||+|+|||++|++||+++|||||+|+||
T Consensus 1 fp~~FlwG~atsa~Q~EG~~~~~gkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~~G~~~~R~si~Wsri 80 (427)
T TIGR03356 1 FPKDFLWGVATASYQIEGAVNEDGRGPSIWDTFSHTPGKVKDGDTGDVACDHYHRYEEDVALMKELGVDAYRFSIAWPRI 80 (427)
T ss_pred CCCCCEEeeechHHhhCCCcCCCCCccchhheeccCCCcccCCCCCCccccHHHhHHHHHHHHHHcCCCeEEcccchhhc
Confidence 89999999999999999999999999999999987532 2 45788999999999999999999999999999999999
Q ss_pred ccCCCCCCChhHHHHHHHHHHHHHHCCCeeEEEeccCCcchhHHhhhCCccccceE------------------------
Q 009558 343 IPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHSDLPQALEDEYGGWINRMIV------------------------ 398 (532)
Q Consensus 343 ~P~G~G~vN~~Gi~~Y~~lId~L~~~GIePiVTL~HfdlP~~L~d~~GGW~n~~~v------------------------ 398 (532)
+|+|.|.+|++|++||+++|++|+++||+|+|||+|||+|+||+++ |||+|++++
T Consensus 81 ~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P~~l~~~-gGw~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~ 159 (427)
T TIGR03356 81 FPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLPQALEDR-GGWLNRDTAEWFAEYAAVVAERLGDRVKHWITL 159 (427)
T ss_pred ccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCccHHHHhc-CCCCChHHHHHHHHHHHHHHHHhCCcCCEEEEe
Confidence 9998889999999999999999999999999999999999999987 999999766
Q ss_pred --------------------------------------------------------------------------------
Q 009558 399 -------------------------------------------------------------------------------- 398 (532)
Q Consensus 399 -------------------------------------------------------------------------------- 398 (532)
T Consensus 160 NEp~~~~~~~y~~G~~~P~~~~~~~~~~~~hnll~Aha~A~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~d~~aa~~~~~ 239 (427)
T TIGR03356 160 NEPWCSAFLGYGLGVHAPGLRDLRAALQAAHHLLLAHGLAVQALRANGPGAQVGIVLNLTPVYPASDSPEDVAAARRADG 239 (427)
T ss_pred cCcceecccchhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeeeeCCCCHHHHHHHHHHHH
Confidence
Q ss_pred -----EecccccCCCcchhhcccCCCCCCCChhHHhhhcCCCceeeeecccceeeecCCCCcccCCCCCCCCcccccccc
Q 009558 399 -----VANPLVYGDYPKIMKQNAGSRLPAFTDHESQQIKGSADFIGVINYYTVYIKDNPSSLKQKHRDWSADTATKFFFK 473 (532)
Q Consensus 399 -----FlDPi~~GdYP~~m~e~lGsrLP~FT~eE~elIkgslDFLGINYYTs~~Vka~~~~~~~~~~~~~~D~~v~~~~~ 473 (532)
|+||++.|+||+.|++.++ .+|.||++|++++++++||||||||++.+|+...... .... ...+..
T Consensus 240 ~~~~~f~d~~~~G~yP~~~~~~l~-~~p~~~~~d~~~l~~~~DFiGiNyY~~~~v~~~~~~~----~~~~----~~~~~~ 310 (427)
T TIGR03356 240 LLNRWFLDPLLKGRYPEDLLEYLG-DAPFVQDGDLETIAQPLDFLGINYYTRSVVAADPGTG----AGFV----EVPEGV 310 (427)
T ss_pred HHhhhhhHHHhCCCCCHHHHHHhc-cCCCCCHHHHHHhcCCCCEEEEeccccceeccCCCCC----CCcc----ccCCCC
Confidence 7789999999999998887 4699999999999999999999999999997642110 0000 111223
Q ss_pred CCCCCC-CCCchHHHHHHHHHHHHcCCCCEEEEeCCCCCCCh-------hhhhhhhhhhh
Q 009558 474 QDTAAS-SNEPSSLQIVLEYFKQVYGNPPIYIHENGSLSLSL-------SIYLSIYLLML 525 (532)
Q Consensus 474 ~~t~~G-eIyP~GLr~iL~~Ik~rYgn~PIyITENGig~~d~-------~~~~~~~~~~~ 525 (532)
+.+.+| +|+|+|||++|+++++||+++||||||||+|..+. |++|-.||-+-
T Consensus 311 ~~~~~gw~i~P~Gl~~~L~~~~~rY~~ppi~ITENG~~~~d~~~~g~~~D~~Ri~yl~~h 370 (427)
T TIGR03356 311 PKTAMGWEVYPEGLYDLLLRLKEDYPGPPIYITENGAAFDDEVTDGEVHDPERIAYLRDH 370 (427)
T ss_pred CcCCCCCeechHHHHHHHHHHHHhcCCCCEEEeCCCCCcCCCCcCCCcCCHHHHHHHHHH
Confidence 445677 99999999999999999998899999999997552 44555555443
No 14
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.33 E-value=3.3e-07 Score=89.32 Aligned_cols=97 Identities=26% Similarity=0.420 Sum_probs=86.9
Q ss_pred cceeeeecCCchhHhHhhhccccccccccccccccchhhhhHHHHHhce-eeeeeccCCCC-CCCCceeEEEEccccccc
Q 009558 92 MLKVLHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDADANCRSLVRKGI-VRVADIKFPLP-YRAKSFSLVIVSDAVDYL 169 (532)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 169 (532)
-.+||++|-......+.|.++.++++.|||-. +.+..+-|+||+ |--.|+.-.|+ |..+||..||.|+||..+
T Consensus 14 gsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid-----~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~ 88 (193)
T PF07021_consen 14 GSRVLDLGCGDGELLAYLKDEKQVDGYGVEID-----PDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAV 88 (193)
T ss_pred CCEEEecCCCchHHHHHHHHhcCCeEEEEecC-----HHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhH
Confidence 37999999999999999999999999999832 356888899999 99999999997 999999999999999998
Q ss_pred ChhhhccccccccccccccEEEEecC
Q 009558 170 SPKYLNRTLPELARVSVDGVVIFAGY 195 (532)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (532)
++-.+.|-|+.||..++||-|+-+
T Consensus 89 --~~P~~vL~EmlRVgr~~IVsFPNF 112 (193)
T PF07021_consen 89 --RRPDEVLEEMLRVGRRAIVSFPNF 112 (193)
T ss_pred --hHHHHHHHHHHHhcCeEEEEecCh
Confidence 566677999999999999998754
No 15
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=98.28 E-value=7.1e-07 Score=93.81 Aligned_cols=70 Identities=26% Similarity=0.541 Sum_probs=57.9
Q ss_pred cccHHHHHHHHHcCCCEEEe-cccccccccCCCCCCChhHHHHHHHHHHHHHHCCCeeEEEeccCCcchhHHhhh
Q 009558 316 HKYKEDVKLMAKTGLDAYRF-SISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHSDLPQALEDEY 389 (532)
Q Consensus 316 hrYkEDI~Lm~elGv~ayRF-SIsWsRI~P~G~G~vN~~Gi~~Y~~lId~L~~~GIePiVTL~HfdlP~~L~d~~ 389 (532)
..+++|+++|+++|+|+.|+ .++|++|+|+ +|.+| +..++++|+.+.++||.+++.+.+...|.||.+++
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~-eG~yd---F~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~ 80 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFSWSWLEPE-EGQYD---FSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKY 80 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCEHHHH-SB-TTB------HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCS
T ss_pred HHHHHHHHHHHHcCCCEEEEEEechhhccCC-CCeee---cHHHHHHHHHHHhccCeEEEEecccccccchhhhc
Confidence 57899999999999999996 6799999999 89998 77899999999999999999999999999997643
No 16
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=97.66 E-value=0.0001 Score=72.42 Aligned_cols=63 Identities=19% Similarity=0.379 Sum_probs=56.3
Q ss_pred ccHHHHHHHHHcCCCEEEecccccccc-cCCCCCCChhHHHHHHHHHHHHHHCCCeeEEEeccC
Q 009558 317 KYKEDVKLMAKTGLDAYRFSISWSRLI-PNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHS 379 (532)
Q Consensus 317 rYkEDI~Lm~elGv~ayRFSIsWsRI~-P~G~G~vN~~Gi~~Y~~lId~L~~~GIePiVTL~Hf 379 (532)
..++|++.|+++|+|+.|+-|.|..++ |...+.++...++.++++|+.+.++||.++++|++.
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~ 85 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNA 85 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEES
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 568999999999999999999998888 453356999999999999999999999999999984
No 17
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=96.49 E-value=0.0077 Score=60.42 Aligned_cols=46 Identities=26% Similarity=0.453 Sum_probs=39.2
Q ss_pred ccccccccCCCCCCChhHHHHHHHHHHHHHHCCCee--EEEeccCCcchhHH
Q 009558 337 ISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQP--HVTLHHSDLPQALE 386 (532)
Q Consensus 337 IsWsRI~P~G~G~vN~~Gi~~Y~~lId~L~~~GIeP--iVTL~HfdlP~~L~ 386 (532)
+.|++++|. +|.+| ++-.+.+++.++++||+. .+.++|...|.|+.
T Consensus 1 ~kW~~~ep~-~G~~n---~~~~D~~~~~a~~~gi~v~gH~l~W~~~~P~W~~ 48 (254)
T smart00633 1 MKWDSTEPS-RGQFN---FSGADAIVNFAKENGIKVRGHTLVWHSQTPDWVF 48 (254)
T ss_pred CCcccccCC-CCccC---hHHHHHHHHHHHHCCCEEEEEEEeecccCCHhhh
Confidence 369999999 89999 556788999999999994 56678889999986
No 18
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=96.35 E-value=0.005 Score=60.20 Aligned_cols=97 Identities=19% Similarity=0.255 Sum_probs=74.4
Q ss_pred ceeeeecCCchhHhHhhhcc-ccccccccccccccchhhhhHHHHHhceeeeeeccCCCCCCCCceeEEEEcccccccCh
Q 009558 93 LKVLHVGPETCSVVSKLLKE-EDTEAWGVEPYDLDDADANCRSLVRKGIVRVADIKFPLPYRAKSFSLVIVSDAVDYLSP 171 (532)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (532)
.+||-||-.|-.....|.+. ...+..|||+.+ ++-..|+....+--+..+|+.- |+...+|.+|+...+|.|++|
T Consensus 45 ~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~--~~l~~A~~~~~~~~~~~~d~~~--~~~~~sfD~V~~~~vL~hl~p 120 (204)
T TIGR03587 45 ASILELGANIGMNLAALKRLLPFKHIYGVEINE--YAVEKAKAYLPNINIIQGSLFD--PFKDNFFDLVLTKGVLIHINP 120 (204)
T ss_pred CcEEEEecCCCHHHHHHHHhCCCCeEEEEECCH--HHHHHHHhhCCCCcEEEeeccC--CCCCCCEEEEEECChhhhCCH
Confidence 57999999999988888765 467899997753 2333444433334466788765 778899999999999999999
Q ss_pred hhhccccccccccccccEEEEec
Q 009558 172 KYLNRTLPELARVSVDGVVIFAG 194 (532)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~ 194 (532)
..+.+.+-++.|++.. .|+.+.
T Consensus 121 ~~~~~~l~el~r~~~~-~v~i~e 142 (204)
T TIGR03587 121 DNLPTAYRELYRCSNR-YILIAE 142 (204)
T ss_pred HHHHHHHHHHHhhcCc-EEEEEE
Confidence 9999999999999854 444444
No 19
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=96.33 E-value=0.0051 Score=70.19 Aligned_cols=70 Identities=17% Similarity=0.399 Sum_probs=60.4
Q ss_pred cccHHHHHHHHHcCCCEEEecc-cccccccCCCCCCChhHHHHHHHH-HHHHHHCCCeeEEEe-ccCCcchhHHhhh
Q 009558 316 HKYKEDVKLMAKTGLDAYRFSI-SWSRLIPNGRGPVNPKGLQYYNNL-INELISYGIQPHVTL-HHSDLPQALEDEY 389 (532)
Q Consensus 316 hrYkEDI~Lm~elGv~ayRFSI-sWsRI~P~G~G~vN~~Gi~~Y~~l-Id~L~~~GIePiVTL-~HfdlP~~L~d~~ 389 (532)
.-|++|++.|+++|+|+.|.++ +|++++|+ .|++|-. +-+.. ++.+.+.|+..++.- --...|.|+.+++
T Consensus 30 ~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~-eG~fdf~---~~D~~~l~~a~~~Gl~vil~t~P~g~~P~Wl~~~~ 102 (673)
T COG1874 30 ETWMDDLRKMKALGLNTVRIGYFAWNLHEPE-EGKFDFT---WLDEIFLERAYKAGLYVILRTGPTGAPPAWLAKKY 102 (673)
T ss_pred HHHHHHHHHHHHhCCCeeEeeeEEeeccCcc-ccccCcc---cchHHHHHHHHhcCceEEEecCCCCCCchHHhcCC
Confidence 3578999999999999999954 99999999 8999844 67777 999999999999877 6788999997543
No 20
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=95.90 E-value=0.012 Score=47.96 Aligned_cols=92 Identities=22% Similarity=0.331 Sum_probs=68.6
Q ss_pred eeecCCchhHhHhhhccccccccccccccccchhhhhHHHHHhce--eeeeeccCCCCCCCCceeEEEEcccccccChhh
Q 009558 96 LHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDADANCRSLVRKGI--VRVADIKFPLPYRAKSFSLVIVSDAVDYLSPKY 173 (532)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (532)
|-+|-.+......|.+....+.+|+|+.. +.-..|+...++.- ++.+|+. .||+...||.+|+..+++.|+ ..
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~--~~~~~~~~~~~~~~~~~~~~d~~-~l~~~~~sfD~v~~~~~~~~~--~~ 75 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISE--EMLEQARKRLKNEGVSFRQGDAE-DLPFPDNSFDVVFSNSVLHHL--ED 75 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-H--HHHHHHHHHTTTSTEEEEESBTT-SSSS-TT-EEEEEEESHGGGS--SH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCH--HHHHHHHhcccccCchheeehHH-hCccccccccccccccceeec--cC
Confidence 56788888899999888889999999874 34556776665543 7888864 459999999999999999999 66
Q ss_pred hcccccccccccc-ccEEEE
Q 009558 174 LNRTLPELARVSV-DGVVIF 192 (532)
Q Consensus 174 ~~~~~~~~~~~~~-~~~~~~ 192 (532)
..+.+-|+.||-. +|.++|
T Consensus 76 ~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 76 PEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHHcCcCeEEeC
Confidence 7788889998754 455543
No 21
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=95.65 E-value=0.031 Score=59.08 Aligned_cols=56 Identities=23% Similarity=0.420 Sum_probs=36.6
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCeeEEEeccCC
Q 009558 319 KEDVKLMAKTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHSD 380 (532)
Q Consensus 319 kEDI~Lm~elGv~ayRFSIsWsRI~P~G~G~vN~~Gi~~Y~~lId~L~~~GIePiVTL~Hfd 380 (532)
++=+++||+.|+|+.|.-+ | +-|...|.- .+++-.++....+++||+.++++|--|
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-w--v~P~~~g~~---~~~~~~~~akrak~~Gm~vlldfHYSD 82 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-W--VNPYDGGYN---DLEDVIALAKRAKAAGMKVLLDFHYSD 82 (332)
T ss_dssp --HHHHHHHTT--EEEEEE----SS-TTTTTT---SHHHHHHHHHHHHHTT-EEEEEE-SSS
T ss_pred CCHHHHHHhcCCCeEEEEe-c--cCCcccccC---CHHHHHHHHHHHHHCCCeEEEeecccC
Confidence 3447999999999999944 2 234421433 377788899999999999999998533
No 22
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=94.50 E-value=0.15 Score=48.68 Aligned_cols=96 Identities=26% Similarity=0.432 Sum_probs=68.1
Q ss_pred ceeeeecCCchhHhHhhhccccccccccccccccchhhhhHHHHHhce-eeeeeccCCC-CCCCCceeEEEEcccccccC
Q 009558 93 LKVLHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDADANCRSLVRKGI-VRVADIKFPL-PYRAKSFSLVIVSDAVDYLS 170 (532)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 170 (532)
.+||.||-.+..+...|.+.-...++|||+-+ +.-..|+ ++|+ +..+|+.-.+ |+..++|++|+.+.++.++.
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~--~~i~~a~---~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~ 89 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDEKQVRGYGIEIDQ--DGVLACV---ARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATR 89 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhccCCcEEEEeCCH--HHHHHHH---HcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCc
Confidence 37999999999987777666666788988642 1111222 2342 3457876545 47788999999999999984
Q ss_pred hhhhccccccccccccccEEEEecC
Q 009558 171 PKYLNRTLPELARVSVDGVVIFAGY 195 (532)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (532)
. ..+.|-++.|+...+++.|..+
T Consensus 90 d--~~~~l~e~~r~~~~~ii~~p~~ 112 (194)
T TIGR02081 90 N--PEEILDEMLRVGRHAIVSFPNF 112 (194)
T ss_pred C--HHHHHHHHHHhCCeEEEEcCCh
Confidence 3 4567889999988877776554
No 23
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=94.20 E-value=0.14 Score=51.94 Aligned_cols=128 Identities=14% Similarity=0.164 Sum_probs=78.1
Q ss_pred hcccC-cccchHhhHhhhhHHHHHhhcccceeeeecCCchhHhHhhhccccccccccccccccchhhhhHHHHH-hcee-
Q 009558 65 SKVEG-VVSCTLEVQRALPVLKKAYGDSMLKVLHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDADANCRSLVR-KGIV- 141 (532)
Q Consensus 65 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~- 141 (532)
.++=| ++-=+.++..+.-+|++.-=+.-.+||.||..+=.....|.+.-..+..||++.+ +.-..++.... ..-|
T Consensus 25 e~~~g~~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~--~~~~~a~~~~~~~~~i~ 102 (263)
T PTZ00098 25 EFIFGEDYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICE--KMVNIAKLRNSDKNKIE 102 (263)
T ss_pred HHHhCCCCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCH--HHHHHHHHHcCcCCceE
Confidence 33334 4444444444444444432234468999999986665555443345777777642 11222333222 1223
Q ss_pred -eeeeccCCCCCCCCceeEEEEcccccccChhhhcccccccccc-ccccEEEEecC
Q 009558 142 -RVADIKFPLPYRAKSFSLVIVSDAVDYLSPKYLNRTLPELARV-SVDGVVIFAGY 195 (532)
Q Consensus 142 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 195 (532)
..+|+. .+|+...+|.+|+..+++-++++.-..+.|-++.|+ ...|.++++.+
T Consensus 103 ~~~~D~~-~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 103 FEANDIL-KKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred EEECCcc-cCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 346764 577888999999999999888766677788888775 56788888764
No 24
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=94.05 E-value=0.12 Score=50.17 Aligned_cols=95 Identities=17% Similarity=0.173 Sum_probs=68.6
Q ss_pred ceeeeecCCchhHhHhhhccccccccccccccccchhhhh-HHHHHhce-----eeeeeccCCCCCCCCceeEEEEcccc
Q 009558 93 LKVLHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDADANC-RSLVRKGI-----VRVADIKFPLPYRAKSFSLVIVSDAV 166 (532)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (532)
.+||-+|-.+-.+...|.+. ..+..|||+-+ ++-..+ +.+-..+. ..++|+... | ++|++|+.++.+
T Consensus 57 ~~vLDiGcG~G~~~~~la~~-~~~v~gvD~s~--~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-~---~~fD~ii~~~~l 129 (219)
T TIGR02021 57 KRVLDAGCGTGLLSIELAKR-GAIVKAVDISE--QMVQMARNRAQGRDVAGNVEFEVNDLLSL-C---GEFDIVVCMDVL 129 (219)
T ss_pred CEEEEEeCCCCHHHHHHHHC-CCEEEEEECCH--HHHHHHHHHHHhcCCCCceEEEECChhhC-C---CCcCEEEEhhHH
Confidence 58999999999888887764 45788887642 111122 22323332 466777653 3 899999999999
Q ss_pred cccChhhhccccccccccccccEEEEec
Q 009558 167 DYLSPKYLNRTLPELARVSVDGVVIFAG 194 (532)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (532)
.|+++.-+.+.+=++.|+...|+++...
T Consensus 130 ~~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 130 IHYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred HhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 9998888888999999988877766654
No 25
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=93.84 E-value=0.069 Score=47.90 Aligned_cols=94 Identities=23% Similarity=0.266 Sum_probs=64.6
Q ss_pred cccceeeeecCCchhHhHhhhccccccccccccccccchhhhhHHHHHhceeeeeeccCCCCCCCCceeEEEEccccccc
Q 009558 90 DSMLKVLHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDADANCRSLVRKGIVRVADIKFPLPYRAKSFSLVIVSDAVDYL 169 (532)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (532)
+.-.+||-+|+.+...+..| ++...+..||+|.+-.-.. +-.+......--.+...++|++|+.+++|.|+
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l-~~~~~~~~g~D~~~~~~~~--------~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~ 91 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRAL-AKRGFEVTGVDISPQMIEK--------RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHL 91 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHH-HHTTSEEEEEESSHHHHHH--------TTSEEEEEECHTHHCHSSSEEEEEEESSGGGS
T ss_pred CCCCEEEEEcCCCCHHHHHH-HHhCCEEEEEECCHHHHhh--------hhhhhhhhhhhhhhccccchhhHhhHHHHhhc
Confidence 55669999999999665555 6777799999987532211 11222211111444578899999999999999
Q ss_pred Chhhhcccccccccccc-ccEEEEec
Q 009558 170 SPKYLNRTLPELARVSV-DGVVIFAG 194 (532)
Q Consensus 170 ~~~~~~~~~~~~~~~~~-~~~~~~~~ 194 (532)
.. ....|-++.++-. +|.++++-
T Consensus 92 ~d--~~~~l~~l~~~LkpgG~l~~~~ 115 (161)
T PF13489_consen 92 PD--PEEFLKELSRLLKPGGYLVISD 115 (161)
T ss_dssp SH--HHHHHHHHHHCEEEEEEEEEEE
T ss_pred cc--HHHHHHHHHHhcCCCCEEEEEE
Confidence 83 6678888888665 56766654
No 26
>PRK10150 beta-D-glucuronidase; Provisional
Probab=93.70 E-value=0.12 Score=58.16 Aligned_cols=43 Identities=21% Similarity=0.193 Sum_probs=31.4
Q ss_pred cccHHHHHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCeeEEE
Q 009558 316 HKYKEDVKLMAKTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVT 375 (532)
Q Consensus 316 hrYkEDI~Lm~elGv~ayRFSIsWsRI~P~G~G~vN~~Gi~~Y~~lId~L~~~GIePiVT 375 (532)
..+..|+++||++|+|+.|+|- .|. + ..+++.|=+.||-.+.-
T Consensus 313 ~~~~~d~~l~K~~G~N~vR~sh-----~p~-----~-------~~~~~~cD~~GllV~~E 355 (604)
T PRK10150 313 VLNVHDHNLMKWIGANSFRTSH-----YPY-----S-------EEMLDLADRHGIVVIDE 355 (604)
T ss_pred HHHHHHHHHHHHCCCCEEEecc-----CCC-----C-------HHHHHHHHhcCcEEEEe
Confidence 4578899999999999999963 343 1 23456677788877643
No 27
>PLN02161 beta-amylase
Probab=93.14 E-value=0.3 Score=54.29 Aligned_cols=95 Identities=19% Similarity=0.285 Sum_probs=74.5
Q ss_pred CccccccHHHHHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCeeEEEe-ccC-----------
Q 009558 312 CDEYHKYKEDVKLMAKTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL-HHS----------- 379 (532)
Q Consensus 312 ~D~YhrYkEDI~Lm~elGv~ayRFSIsWsRI~P~G~G~vN~~Gi~~Y~~lId~L~~~GIePiVTL-~Hf----------- 379 (532)
..+..-.+..++-+|.+||+..-.-+=|--++.++++.+| +..|+++++-+++.|++..+.| +|=
T Consensus 113 v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~Yd---WsgY~~l~~mvr~~GLKlq~vmSFHqCGGNvGd~~~I 189 (531)
T PLN02161 113 IKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFK---WSLYEELFRLISEAGLKLHVALCFHSNMHLFGGKGGI 189 (531)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCccCc
Confidence 4556667889999999999999999999999999999999 7779999999999999987775 452
Q ss_pred CcchhHHhh-----------hCCccccceE----EecccccCCCc
Q 009558 380 DLPQALEDE-----------YGGWINRMIV----VANPLVYGDYP 409 (532)
Q Consensus 380 dlP~~L~d~-----------~GGW~n~~~v----FlDPi~~GdYP 409 (532)
-||+|+.+. .-|-.|+|.+ =..|++.|+=|
T Consensus 190 pLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTp 234 (531)
T PLN02161 190 SLPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTA 234 (531)
T ss_pred cCCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCH
Confidence 499998652 1355555554 22377766654
No 28
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=92.99 E-value=0.2 Score=54.48 Aligned_cols=135 Identities=16% Similarity=0.206 Sum_probs=89.2
Q ss_pred ceeeeecCCchhHhHhhhccccccccccccccccchhhhhHHHH---Hhceeeeeecc-CCCCCCCCceeEEEEcccccc
Q 009558 93 LKVLHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDADANCRSLV---RKGIVRVADIK-FPLPYRAKSFSLVIVSDAVDY 168 (532)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 168 (532)
.+||-+|..+..+...|.+. ..+..|||+.. .+=..++.+- .+--+..+|+. ..+|.-..+|++|+.+.++.|
T Consensus 39 ~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~--~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~ 115 (475)
T PLN02336 39 KSVLELGAGIGRFTGELAKK-AGQVIALDFIE--SVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLMY 115 (475)
T ss_pred CEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCH--HHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHHh
Confidence 47999999999888877765 46788888643 1111222221 11224456763 345565789999999999999
Q ss_pred cChhhhccccccccccc-cccEEEEecCCCccchhhhhhhccCCCcccccchhHHHHHHhcccccc
Q 009558 169 LSPKYLNRTLPELARVS-VDGVVIFAGYPGQHRAKVSELSKFGRPAKLRSSTWWIRYFLQNSLEEN 233 (532)
Q Consensus 169 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~r~~k~r~s~~w~~~f~q~~le~n 233 (532)
+++.-+.+.|-++.|+- .+|+++|.-..--+ -.++..-..|-..|+..||.+.|.++++..-
T Consensus 116 l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 178 (475)
T PLN02336 116 LSDKEVENLAERMVKWLKVGGYIFFRESCFHQ---SGDSKRKNNPTHYREPRFYTKVFKECHTRDE 178 (475)
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEEeccCCC---CCcccccCCCCeecChHHHHHHHHHheeccC
Confidence 99888888889999964 56777764321111 1122223345566778899999999876554
No 29
>PLN02803 beta-amylase
Probab=92.96 E-value=0.35 Score=54.01 Aligned_cols=91 Identities=19% Similarity=0.326 Sum_probs=71.8
Q ss_pred cccHHHHHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCeeEEEe-cc-----------CCcch
Q 009558 316 HKYKEDVKLMAKTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL-HH-----------SDLPQ 383 (532)
Q Consensus 316 hrYkEDI~Lm~elGv~ayRFSIsWsRI~P~G~G~vN~~Gi~~Y~~lId~L~~~GIePiVTL-~H-----------fdlP~ 383 (532)
.-.+..++-+|.+||+..-.-+=|--++.+|++.+| +..|+++++-+++.|++..+.| +| --||+
T Consensus 107 ~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~Yd---WsgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP~ 183 (548)
T PLN02803 107 RAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYN---WEGYAELVQMVQKHGLKLQVVMSFHQCGGNVGDSCSIPLPP 183 (548)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCH
Confidence 446779999999999999999999999999999999 7779999999999999987775 45 35999
Q ss_pred hHHhh-----------hCCccccceE----EecccccCCCc
Q 009558 384 ALEDE-----------YGGWINRMIV----VANPLVYGDYP 409 (532)
Q Consensus 384 ~L~d~-----------~GGW~n~~~v----FlDPi~~GdYP 409 (532)
|+.+. .-|-.|+|.+ =..|++.|+=|
T Consensus 184 WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTp 224 (548)
T PLN02803 184 WVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTP 224 (548)
T ss_pred HHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCH
Confidence 98652 1355555555 23466666644
No 30
>PLN02905 beta-amylase
Probab=92.41 E-value=0.47 Score=53.99 Aligned_cols=95 Identities=13% Similarity=0.219 Sum_probs=74.4
Q ss_pred CccccccHHHHHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCeeEEEe-cc-----------C
Q 009558 312 CDEYHKYKEDVKLMAKTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL-HH-----------S 379 (532)
Q Consensus 312 ~D~YhrYkEDI~Lm~elGv~ayRFSIsWsRI~P~G~G~vN~~Gi~~Y~~lId~L~~~GIePiVTL-~H-----------f 379 (532)
.....-.+..+..+|.+||...-.-+=|--++.+|++.+| +..|+++++-+++.|++..+.| +| -
T Consensus 282 l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~Yd---WsgY~~L~~mvr~~GLKlqvVMSFHqCGGNVGD~~~I 358 (702)
T PLN02905 282 LADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYN---WNGYKRLFQMVRELKLKLQVVMSFHECGGNVGDDVCI 358 (702)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccc
Confidence 3455667889999999999999999999999999999999 7779999999999999987775 45 3
Q ss_pred CcchhHHhh-----------hCCccccceE----EecccccCCCc
Q 009558 380 DLPQALEDE-----------YGGWINRMIV----VANPLVYGDYP 409 (532)
Q Consensus 380 dlP~~L~d~-----------~GGW~n~~~v----FlDPi~~GdYP 409 (532)
-||+|+.+. .-|-.|+|.+ =..|++.|+=|
T Consensus 359 PLP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTp 403 (702)
T PLN02905 359 PLPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTA 403 (702)
T ss_pred cCCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCH
Confidence 599998652 1455555555 33466666544
No 31
>PLN02801 beta-amylase
Probab=92.38 E-value=0.49 Score=52.62 Aligned_cols=91 Identities=20% Similarity=0.360 Sum_probs=71.5
Q ss_pred cccHHHHHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCeeEEEe-cc-----------CCcch
Q 009558 316 HKYKEDVKLMAKTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL-HH-----------SDLPQ 383 (532)
Q Consensus 316 hrYkEDI~Lm~elGv~ayRFSIsWsRI~P~G~G~vN~~Gi~~Y~~lId~L~~~GIePiVTL-~H-----------fdlP~ 383 (532)
.-.+..++.+|.+||...-.-+=|--++..|++.+| +..|+++++-++++|++..+.| +| .-||+
T Consensus 37 ~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~Yd---WsgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP~ 113 (517)
T PLN02801 37 EGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYD---WSAYRSLFELVQSFGLKIQAIMSFHQCGGNVGDAVNIPIPQ 113 (517)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCH
Confidence 346788999999999999999999999999999999 7779999999999999987765 34 45999
Q ss_pred hHHhh-----------hCCccccceE----EecccccCCCc
Q 009558 384 ALEDE-----------YGGWINRMIV----VANPLVYGDYP 409 (532)
Q Consensus 384 ~L~d~-----------~GGW~n~~~v----FlDPi~~GdYP 409 (532)
|+.+. .-|-.|+|.+ =..|++.|+=|
T Consensus 114 WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTp 154 (517)
T PLN02801 114 WVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTA 154 (517)
T ss_pred HHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCH
Confidence 98753 1355555544 22367777655
No 32
>PLN02705 beta-amylase
Probab=92.29 E-value=0.48 Score=53.74 Aligned_cols=69 Identities=16% Similarity=0.247 Sum_probs=60.6
Q ss_pred cccHHHHHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCeeEEEe-cc-----------CCcch
Q 009558 316 HKYKEDVKLMAKTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL-HH-----------SDLPQ 383 (532)
Q Consensus 316 hrYkEDI~Lm~elGv~ayRFSIsWsRI~P~G~G~vN~~Gi~~Y~~lId~L~~~GIePiVTL-~H-----------fdlP~ 383 (532)
.-.+..++-+|.+||...-.-+=|--++.++++.+| +..|+++++-+++.|++..+.| +| --||+
T Consensus 268 ~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~Yd---WsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPLP~ 344 (681)
T PLN02705 268 EGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYV---WSGYRELFNIIREFKLKLQVVMAFHEYGGNASGNVMISLPQ 344 (681)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEeeccCCCCCCcccccCCH
Confidence 446788999999999999999999999999999999 7779999999999999987765 45 35999
Q ss_pred hHHh
Q 009558 384 ALED 387 (532)
Q Consensus 384 ~L~d 387 (532)
|+.+
T Consensus 345 WV~e 348 (681)
T PLN02705 345 WVLE 348 (681)
T ss_pred HHHH
Confidence 9875
No 33
>PLN00197 beta-amylase; Provisional
Probab=92.20 E-value=0.68 Score=52.04 Aligned_cols=70 Identities=19% Similarity=0.371 Sum_probs=61.3
Q ss_pred cccHHHHHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCeeEEEe-cc-----------CCcch
Q 009558 316 HKYKEDVKLMAKTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL-HH-----------SDLPQ 383 (532)
Q Consensus 316 hrYkEDI~Lm~elGv~ayRFSIsWsRI~P~G~G~vN~~Gi~~Y~~lId~L~~~GIePiVTL-~H-----------fdlP~ 383 (532)
.-.+..++.+|.+||+..-.-+=|--+++++++.+| +..|+++++-++++|++..+.| +| --||+
T Consensus 127 ~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~Yd---WsgY~~L~~mvr~~GLKlq~VmSFHqCGGNVGD~~~IpLP~ 203 (573)
T PLN00197 127 KAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYN---WGGYNELLEMAKRHGLKVQAVMSFHQCGGNVGDSCTIPLPK 203 (573)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCH
Confidence 347889999999999999999999999999999999 7779999999999999987775 45 35999
Q ss_pred hHHhh
Q 009558 384 ALEDE 388 (532)
Q Consensus 384 ~L~d~ 388 (532)
|+.+.
T Consensus 204 WV~~~ 208 (573)
T PLN00197 204 WVVEE 208 (573)
T ss_pred HHHHh
Confidence 98753
No 34
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=92.11 E-value=0.69 Score=44.65 Aligned_cols=105 Identities=18% Similarity=0.232 Sum_probs=67.8
Q ss_pred hhhhHHHHHhh-cccceeeeecCCchhHhHhhhcccccccccccccc--ccchhhhhHHHHHhce-----eeeeeccCCC
Q 009558 79 RALPVLKKAYG-DSMLKVLHVGPETCSVVSKLLKEEDTEAWGVEPYD--LDDADANCRSLVRKGI-----VRVADIKFPL 150 (532)
Q Consensus 79 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 150 (532)
.++..|+. +| ..-.+||-||..|-.....|++. ..+..|+|+-. ++.+..+++. .|+ ..++|+
T Consensus 51 ~~~~~l~~-~~~~~~~~vLDvGcG~G~~~~~l~~~-~~~v~~~D~s~~~i~~a~~~~~~---~~~~~~i~~~~~d~---- 121 (230)
T PRK07580 51 TVLSWLPA-DGDLTGLRILDAGCGVGSLSIPLARR-GAKVVASDISPQMVEEARERAPE---AGLAGNITFEVGDL---- 121 (230)
T ss_pred HHHHHHHh-cCCCCCCEEEEEeCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHh---cCCccCcEEEEcCc----
Confidence 34444443 22 23468999999999887777765 34577776522 2223333222 222 344563
Q ss_pred CCCCCceeEEEEcccccccChhhhccccccccccccccEEEE
Q 009558 151 PYRAKSFSLVIVSDAVDYLSPKYLNRTLPELARVSVDGVVIF 192 (532)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (532)
+.-..+|.+|+.++++.+.+...+.+.+-+|.++...|++|.
T Consensus 122 ~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 122 ESLLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred hhccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEE
Confidence 333589999999999999888888899999988876665544
No 35
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=91.39 E-value=0.32 Score=52.80 Aligned_cols=70 Identities=16% Similarity=0.357 Sum_probs=56.4
Q ss_pred ccccHHHHHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCeeEEEe-cc-----------CCcc
Q 009558 315 YHKYKEDVKLMAKTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL-HH-----------SDLP 382 (532)
Q Consensus 315 YhrYkEDI~Lm~elGv~ayRFSIsWsRI~P~G~G~vN~~Gi~~Y~~lId~L~~~GIePiVTL-~H-----------fdlP 382 (532)
+.-.+.+++.+|++||...-..+=|.-++..|++.+| +..|+++++-++++|++..+.| +| .-||
T Consensus 15 ~~~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~yd---Ws~Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpLP 91 (402)
T PF01373_consen 15 WNALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYD---WSGYRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPLP 91 (402)
T ss_dssp CHHHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB------HHHHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S-
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccC---cHHHHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcCC
Confidence 4477899999999999999999999999999999998 7779999999999999988776 44 4689
Q ss_pred hhHHh
Q 009558 383 QALED 387 (532)
Q Consensus 383 ~~L~d 387 (532)
.|+.+
T Consensus 92 ~Wv~~ 96 (402)
T PF01373_consen 92 SWVWE 96 (402)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99864
No 36
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=90.16 E-value=0.56 Score=46.38 Aligned_cols=127 Identities=23% Similarity=0.231 Sum_probs=77.9
Q ss_pred hhhcccCcccchHhhHhhhh-HHHHHhhc-ccceeeeecCCchhHhHhhhccccccccccccccccchhhhhHHHHHhce
Q 009558 63 ALSKVEGVVSCTLEVQRALP-VLKKAYGD-SMLKVLHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDADANCRSLVRKGI 140 (532)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (532)
.+++....+.-.+++|+.+- .|.+.... .-.+||.+|-.|..+...| .+...+..|+++.. +.-..|+.....--
T Consensus 12 ~F~~aa~~Y~~~~~~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l-~~~~~~v~~~D~s~--~~l~~a~~~~~~~~ 88 (251)
T PRK10258 12 AFGRAAAHYEQHAELQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYW-RERGSQVTALDLSP--PMLAQARQKDAADH 88 (251)
T ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHH-HHcCCeEEEEECCH--HHHHHHHhhCCCCC
Confidence 34444444443445554332 12222332 3468999999997655544 44556788887643 22223333322223
Q ss_pred eeeeeccCCCCCCCCceeEEEEcccccccChhhhcccccccccccc-ccEEEEecC
Q 009558 141 VRVADIKFPLPYRAKSFSLVIVSDAVDYLSPKYLNRTLPELARVSV-DGVVIFAGY 195 (532)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 195 (532)
+.++|+.- +|+...+|.+|+.+.++.+.. .+.+.|.++.|+-. +|+++|+..
T Consensus 89 ~~~~d~~~-~~~~~~~fD~V~s~~~l~~~~--d~~~~l~~~~~~Lk~gG~l~~~~~ 141 (251)
T PRK10258 89 YLAGDIES-LPLATATFDLAWSNLAVQWCG--NLSTALRELYRVVRPGGVVAFTTL 141 (251)
T ss_pred EEEcCccc-CcCCCCcEEEEEECchhhhcC--CHHHHHHHHHHHcCCCeEEEEEeC
Confidence 46788843 678788999999999988764 35678999998766 578887754
No 37
>PRK05785 hypothetical protein; Provisional
Probab=90.13 E-value=1.1 Score=44.46 Aligned_cols=98 Identities=23% Similarity=0.231 Sum_probs=67.7
Q ss_pred cceeeeecCCchhHhHhhhccccccccccccccccchhhhhHHHHHhceeeeeeccCCCCCCCCceeEEEEcccccccCh
Q 009558 92 MLKVLHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDADANCRSLVRKGIVRVADIKFPLPYRAKSFSLVIVSDAVDYLSP 171 (532)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (532)
-.+||-||-.|..+...|.+.-+.+..||++.. +.=..++ +|.-..++|.. .||+...||.+|+.+.+|.++..
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~--~Ml~~a~---~~~~~~~~d~~-~lp~~d~sfD~v~~~~~l~~~~d 125 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVFKYYVVALDYAE--NMLKMNL---VADDKVVGSFE-ALPFRDKSFDVVMSSFALHASDN 125 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCH--HHHHHHH---hccceEEechh-hCCCCCCCEEEEEecChhhccCC
Confidence 469999999999876666554356888988732 1111111 12223456654 57999999999999999987653
Q ss_pred hhhccccccccccccccE-EEEecCCC
Q 009558 172 KYLNRTLPELARVSVDGV-VIFAGYPG 197 (532)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~-~~~~~~~~ 197 (532)
+.+.|-|+.||-...+ |+-.+.|.
T Consensus 126 --~~~~l~e~~RvLkp~~~ile~~~p~ 150 (226)
T PRK05785 126 --IEKVIAEFTRVSRKQVGFIAMGKPD 150 (226)
T ss_pred --HHHHHHHHHHHhcCceEEEEeCCCC
Confidence 5678999999998765 44455554
No 38
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=90.06 E-value=0.37 Score=50.52 Aligned_cols=71 Identities=17% Similarity=0.291 Sum_probs=51.0
Q ss_pred ccHHHHHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCeeEEEe---cc--CC---cchhHHhh
Q 009558 317 KYKEDVKLMAKTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL---HH--SD---LPQALEDE 388 (532)
Q Consensus 317 rYkEDI~Lm~elGv~ayRFSIsWsRI~P~G~G~vN~~Gi~~Y~~lId~L~~~GIePiVTL---~H--fd---lP~~L~d~ 388 (532)
.|++-++.||++|+|+.-+-+.|.-.+|. +|.+|-+|..--+++|+.+.++|+-.++-. -| |+ +|.||..+
T Consensus 25 ~W~~~l~k~ka~G~n~v~~yv~W~~he~~-~g~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~aE~~~gG~P~Wl~~~ 103 (319)
T PF01301_consen 25 YWRDRLQKMKAAGLNTVSTYVPWNLHEPE-EGQFDFTGNRDLDRFLDLAQENGLYVILRPGPYICAEWDNGGLPAWLLRK 103 (319)
T ss_dssp GHHHHHHHHHHTT-SEEEEE--HHHHSSB-TTB---SGGG-HHHHHHHHHHTT-EEEEEEES---TTBGGGG--GGGGGS
T ss_pred HHHHHHHHHHhCCcceEEEeccccccCCC-CCcccccchhhHHHHHHHHHHcCcEEEecccceecccccchhhhhhhhcc
Confidence 57888999999999999999999999999 899999999889999999999999976532 11 33 88888654
No 39
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=88.97 E-value=0.84 Score=49.33 Aligned_cols=69 Identities=20% Similarity=0.209 Sum_probs=54.0
Q ss_pred Ccccccc-----HHHHHHHHHcCCCEEEecccccccccCC--CCCCC-hhHHHHHHHHHHHHHHCCCeeEEEeccCC
Q 009558 312 CDEYHKY-----KEDVKLMAKTGLDAYRFSISWSRLIPNG--RGPVN-PKGLQYYNNLINELISYGIQPHVTLHHSD 380 (532)
Q Consensus 312 ~D~YhrY-----kEDI~Lm~elGv~ayRFSIsWsRI~P~G--~G~vN-~~Gi~~Y~~lId~L~~~GIePiVTL~Hfd 380 (532)
.-....| ++|+..|++.|+|+.|.-|.|-.+.+.+ ...+. ...+.+-+++|+...+.||.+++.||+..
T Consensus 64 ~~~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~ 140 (407)
T COG2730 64 GLLESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYP 140 (407)
T ss_pred ccchhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccC
Confidence 3445556 8999999999999999999866655543 22232 44555889999999999999999999877
No 40
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=87.98 E-value=1 Score=45.18 Aligned_cols=27 Identities=26% Similarity=0.539 Sum_probs=23.7
Q ss_pred chHHHHHHHHHHHHcCCCCEEEEeCCCC
Q 009558 483 PSSLQIVLEYFKQVYGNPPIYIHENGSL 510 (532)
Q Consensus 483 P~GLr~iL~~Ik~rYgn~PIyITENGig 510 (532)
+.++...|..++++|+ +||.|||.|+.
T Consensus 150 ~~~~~~~i~~~~~~~~-kPIWITEf~~~ 176 (239)
T PF11790_consen 150 ADDFKDYIDDLHNRYG-KPIWITEFGCW 176 (239)
T ss_pred HHHHHHHHHHHHHHhC-CCEEEEeeccc
Confidence 4588999999999997 99999999963
No 41
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=85.96 E-value=1.9 Score=41.24 Aligned_cols=97 Identities=26% Similarity=0.352 Sum_probs=63.0
Q ss_pred ceeeeecCCchhHhHhhhccc-cccccccccccccchhhhhHHHHHh-ceeeeeeccCCCCCCCCceeEEEEcccccccC
Q 009558 93 LKVLHVGPETCSVVSKLLKEE-DTEAWGVEPYDLDDADANCRSLVRK-GIVRVADIKFPLPYRAKSFSLVIVSDAVDYLS 170 (532)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (532)
.+||.+|..+-.....|++.. .....|+++.. +.-..|+..... -.+-++|+. .+|.-..+|.+||.+..+.++.
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~fD~vi~~~~l~~~~ 112 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFPQAEFIALDISA--GMLAQAKTKLSENVQFICGDAE-KLPLEDSSFDLIVSNLALQWCD 112 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCCCCcEEEEeChH--HHHHHHHHhcCCCCeEEecchh-hCCCCCCceeEEEEhhhhhhcc
Confidence 579999999988777776653 23347777632 222233332221 134456765 4566678999999999998884
Q ss_pred hhhhcccccccccc-ccccEEEEec
Q 009558 171 PKYLNRTLPELARV-SVDGVVIFAG 194 (532)
Q Consensus 171 ~~~~~~~~~~~~~~-~~~~~~~~~~ 194 (532)
. +.+.|.++.|+ ..+|.++++.
T Consensus 113 ~--~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 113 D--LSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred C--HHHHHHHHHHHcCCCcEEEEEe
Confidence 3 45677777775 4577777765
No 42
>PRK06202 hypothetical protein; Provisional
Probab=85.26 E-value=0.95 Score=44.41 Aligned_cols=100 Identities=22% Similarity=0.179 Sum_probs=66.6
Q ss_pred cccceeeeecCCchhHhHhhhcc-----ccccccccccccccchhhhhHHHHH-hc-eeeeeeccCCCCCCCCceeEEEE
Q 009558 90 DSMLKVLHVGPETCSVVSKLLKE-----EDTEAWGVEPYDLDDADANCRSLVR-KG-IVRVADIKFPLPYRAKSFSLVIV 162 (532)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~ 162 (532)
..-.+||-+|-.|-.+...|.+. ...+..||++.. ++-..|+.... .+ -+++.|.. -+|....+|++|+.
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~--~~l~~a~~~~~~~~~~~~~~~~~-~l~~~~~~fD~V~~ 135 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDP--RAVAFARANPRRPGVTFRQAVSD-ELVAEGERFDVVTS 135 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCH--HHHHHHHhccccCCCeEEEEecc-cccccCCCccEEEE
Confidence 34468999999998766555532 124788888754 23333343322 12 23444432 12334689999999
Q ss_pred cccccccChhhhccccccccccccccEEEE
Q 009558 163 SDAVDYLSPKYLNRTLPELARVSVDGVVIF 192 (532)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (532)
+.+|.|+++..+.+.|-++.|+...+++|.
T Consensus 136 ~~~lhh~~d~~~~~~l~~~~r~~~~~~~i~ 165 (232)
T PRK06202 136 NHFLHHLDDAEVVRLLADSAALARRLVLHN 165 (232)
T ss_pred CCeeecCChHHHHHHHHHHHHhcCeeEEEe
Confidence 999999999888999999999988555444
No 43
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=84.84 E-value=3 Score=41.10 Aligned_cols=116 Identities=16% Similarity=0.246 Sum_probs=77.5
Q ss_pred hHhhHhhhhHHHHHhhcccceeeeecCCchhHhHhhhcc---ccccccccccccccchhhhhHHHHHh-c-----eeeee
Q 009558 74 TLEVQRALPVLKKAYGDSMLKVLHVGPETCSVVSKLLKE---EDTEAWGVEPYDLDDADANCRSLVRK-G-----IVRVA 144 (532)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~ 144 (532)
-.++..++=-|++.+...-.+||.+|-.|=.....|++. ...+..|||+.+ +.-..|+..+++ + -+...
T Consensus 36 y~~~~~~~~~l~~~~~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~--~ml~~a~~~~~~~~~~~~v~~~~~ 113 (239)
T TIGR00740 36 YSNIITAIGMLAERFVTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQ--PMVERCRQHIAAYHSEIPVEILCN 113 (239)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCH--HHHHHHHHHHHhcCCCCCeEEEEC
Confidence 345555555566667666678999998887666666553 467888888754 334445544432 1 34456
Q ss_pred eccCCCCCCCCceeEEEEcccccccChhhhcccccccccccc-ccEEEEec
Q 009558 145 DIKFPLPYRAKSFSLVIVSDAVDYLSPKYLNRTLPELARVSV-DGVVIFAG 194 (532)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 194 (532)
|+. -+|. ++|++|+.+.++.|+++....+.|.++.|+-. .|.++++.
T Consensus 114 d~~-~~~~--~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 114 DIR-HVEI--KNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred Chh-hCCC--CCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEee
Confidence 664 2333 35899999999999998777788889888754 67666653
No 44
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=84.81 E-value=2.2 Score=41.16 Aligned_cols=96 Identities=18% Similarity=0.267 Sum_probs=61.6
Q ss_pred ceeeeecCCchhHhHhhhccc-cccccccccccccchhhhhHHHHHh-c-----eeeeeec-cCCCCCCCCceeEEEEcc
Q 009558 93 LKVLHVGPETCSVVSKLLKEE-DTEAWGVEPYDLDDADANCRSLVRK-G-----IVRVADI-KFPLPYRAKSFSLVIVSD 164 (532)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~-~~~~~~~~~~~~~~~~~~ 164 (532)
++||.||..+......+.++- ..+..|+++.+ +.-..++..+++ | -+...|+ +. |+ +.+|.+|+...
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~--~~~~~a~~~~~~~gl~~~i~~~~~d~~~~--~~-~~~fD~I~~~~ 75 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISP--EQAEVGRERIRALGLQGRIRIFYRDSAKD--PF-PDTYDLVFGFE 75 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHhcCCCcceEEEecccccC--CC-CCCCCEeehHH
Confidence 479999999988777777653 45677777521 122333333322 3 3455676 33 33 35899999999
Q ss_pred cccccChhhhccccccccc-cccccEEEEecC
Q 009558 165 AVDYLSPKYLNRTLPELAR-VSVDGVVIFAGY 195 (532)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 195 (532)
.+.++.. ....|-++.| +..+|.++++..
T Consensus 76 ~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 76 VIHHIKD--KMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred HHHhCCC--HHHHHHHHHHHcCCCCEEEEEEc
Confidence 9988754 3456666666 467888888764
No 45
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=83.88 E-value=1.7 Score=43.41 Aligned_cols=101 Identities=15% Similarity=0.148 Sum_probs=65.0
Q ss_pred cccceeeeecCCchhHhHhhhcccccccccccccc--ccchhhhhHHHHHhce-----eeeeeccCCCCCCCCceeEEEE
Q 009558 90 DSMLKVLHVGPETCSVVSKLLKEEDTEAWGVEPYD--LDDADANCRSLVRKGI-----VRVADIKFPLPYRAKSFSLVIV 162 (532)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 162 (532)
..-.+||-+|-.|..+...|.+. ..+..|||+.+ ++-+..+|+ +.|+ +..+|+.--.|.-..+|++|+.
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~-g~~v~~vD~s~~~l~~a~~~~~---~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~ 118 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL-GHQVILCDLSAEMIQRAKQAAE---AKGVSDNMQFIHCAAQDIAQHLETPVDLILF 118 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHH---hcCCccceEEEEcCHHHHhhhcCCCCCEEEe
Confidence 44469999999999887777764 67888998753 222333333 2343 3455664322344679999999
Q ss_pred cccccccChhhhcccccccccccc-ccEEEEecCC
Q 009558 163 SDAVDYLSPKYLNRTLPELARVSV-DGVVIFAGYP 196 (532)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 196 (532)
.+.|.|++..- +.|.++.|+-. +|+++++-++
T Consensus 119 ~~vl~~~~~~~--~~l~~~~~~LkpgG~l~i~~~n 151 (255)
T PRK11036 119 HAVLEWVADPK--SVLQTLWSVLRPGGALSLMFYN 151 (255)
T ss_pred hhHHHhhCCHH--HHHHHHHHHcCCCeEEEEEEEC
Confidence 99999996422 45677777655 5555544333
No 46
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=83.17 E-value=4.2 Score=41.17 Aligned_cols=128 Identities=18% Similarity=0.174 Sum_probs=80.7
Q ss_pred hhcccCcccchHhhHhhhhHHHHHhhc------------------------ccceeeeecCCchhHhHhhhcc--ccccc
Q 009558 64 LSKVEGVVSCTLEVQRALPVLKKAYGD------------------------SMLKVLHVGPETCSVVSKLLKE--EDTEA 117 (532)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 117 (532)
-||-.+-++|+.+|++...-.-+.|-. .-.+||-||=.|-.+...|.+. ...+.
T Consensus 22 ~~~~~~~~~~~~~v~~~f~~~A~~YD~~~~~~s~g~~~~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V 101 (261)
T PLN02233 22 RSRRRDVVKCANERQALFNRIAPVYDNLNDLLSLGQHRIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKV 101 (261)
T ss_pred hhhcCChhhhHHHHHHHHHHhhhHHHHhhhhhcCChhHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEE
Confidence 455566788999998776666555542 1136889988888755444432 24588
Q ss_pred ccccccc--ccchhhhhHHHHHh---ce-eeeeeccCCCCCCCCceeEEEEcccccccChhhhccccccccccccc-cEE
Q 009558 118 WGVEPYD--LDDADANCRSLVRK---GI-VRVADIKFPLPYRAKSFSLVIVSDAVDYLSPKYLNRTLPELARVSVD-GVV 190 (532)
Q Consensus 118 ~~~~~~~--~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 190 (532)
.|||+.+ ++-+..+....... .+ +..+|+ ..||+...||.+|+.+.++.++. -..+.|-|+.||-.. |.+
T Consensus 102 ~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~-~~lp~~~~sfD~V~~~~~l~~~~--d~~~~l~ei~rvLkpGG~l 178 (261)
T PLN02233 102 MGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDA-TDLPFDDCYFDAITMGYGLRNVV--DRLKAMQEMYRVLKPGSRV 178 (261)
T ss_pred EEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccc-ccCCCCCCCEeEEEEecccccCC--CHHHHHHHHHHHcCcCcEE
Confidence 9998764 12222111100011 11 445676 35788888999999999998875 346678899998765 555
Q ss_pred EEec
Q 009558 191 IFAG 194 (532)
Q Consensus 191 ~~~~ 194 (532)
++.-
T Consensus 179 ~i~d 182 (261)
T PLN02233 179 SILD 182 (261)
T ss_pred EEEE
Confidence 5543
No 47
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=82.00 E-value=0.89 Score=38.19 Aligned_cols=87 Identities=24% Similarity=0.308 Sum_probs=45.2
Q ss_pred eeecCCchhHhHhhhcc-cccccccccccc--ccchhhhhHHHHHhce--eeeeeccCCCCCCCCceeEEEEcccccccC
Q 009558 96 LHVGPETCSVVSKLLKE-EDTEAWGVEPYD--LDDADANCRSLVRKGI--VRVADIKFPLPYRAKSFSLVIVSDAVDYLS 170 (532)
Q Consensus 96 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (532)
|-||+.|......|+++ ...+--||++.. ++.+...-+..-.... +++.+.....+.-.++|.+|+++.+|.|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l- 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL- 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence 67899999999999877 577778887654 5555555555544333 33333333333333799999999999999
Q ss_pred hhhhcccccccccc
Q 009558 171 PKYLNRTLPELARV 184 (532)
Q Consensus 171 ~~~~~~~~~~~~~~ 184 (532)
+.+-..|-.+.++
T Consensus 80 -~~~~~~l~~~~~~ 92 (99)
T PF08242_consen 80 -EDIEAVLRNIYRL 92 (99)
T ss_dssp -S-HHHHHHHHTTT
T ss_pred -hhHHHHHHHHHHH
Confidence 3333444444443
No 48
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=81.19 E-value=3 Score=40.17 Aligned_cols=108 Identities=10% Similarity=0.115 Sum_probs=69.9
Q ss_pred hHhhHhhhhHHHHHhhcccceeeeecCCchhHhHhhhccccccccccccccccchhhhhHHHHHh-ce---eeeeeccCC
Q 009558 74 TLEVQRALPVLKKAYGDSMLKVLHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDADANCRSLVRK-GI---VRVADIKFP 149 (532)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~ 149 (532)
..++.++++.++ -.+||-+|-.+.....-|.+. ..+..||++.+ ++-..++...++ |+ +.++|+.-
T Consensus 19 ~~~l~~~~~~~~------~~~vLDiGcG~G~~a~~la~~-g~~V~~iD~s~--~~l~~a~~~~~~~~~~v~~~~~d~~~- 88 (195)
T TIGR00477 19 HSAVREAVKTVA------PCKTLDLGCGQGRNSLYLSLA-GYDVRAWDHNP--ASIASVLDMKARENLPLRTDAYDINA- 88 (195)
T ss_pred hHHHHHHhccCC------CCcEEEeCCCCCHHHHHHHHC-CCeEEEEECCH--HHHHHHHHHHHHhCCCceeEeccchh-
Confidence 346677777654 248999999999977766653 45667766542 344444444332 32 34567642
Q ss_pred CCCCCCceeEEEEcccccccChhhhcccccccccc-ccccEEEE
Q 009558 150 LPYRAKSFSLVIVSDAVDYLSPKYLNRTLPELARV-SVDGVVIF 192 (532)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 192 (532)
+|. .++|++|+.+.++-++++..+-+.+-++.|+ ..+|++++
T Consensus 89 ~~~-~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 89 AAL-NEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred ccc-cCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 233 3689999999999999887666777777764 55676333
No 49
>PLN02244 tocopherol O-methyltransferase
Probab=80.46 E-value=5 Score=42.21 Aligned_cols=99 Identities=21% Similarity=0.311 Sum_probs=68.5
Q ss_pred ccceeeeecCCchhHhHhhhccccccccccccccccchhhhhHHHHHh-ce-----eeeeeccCCCCCCCCceeEEEEcc
Q 009558 91 SMLKVLHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDADANCRSLVRK-GI-----VRVADIKFPLPYRAKSFSLVIVSD 164 (532)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 164 (532)
.-.+||-||=.+......|.+.-+.+.-||++.+ +.-..|+.+.++ |+ +.++|+ ..+|+...+|++|+..+
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~--~~i~~a~~~~~~~g~~~~v~~~~~D~-~~~~~~~~~FD~V~s~~ 194 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSP--VQAARANALAAAQGLSDKVSFQVADA-LNQPFEDGQFDLVWSME 194 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCH--HHHHHHHHHHHhcCCCCceEEEEcCc-ccCCCCCCCccEEEECC
Confidence 3468999999998877777765566778887543 122334554433 32 456776 45788889999999999
Q ss_pred cccccChhhhcccccccccccc-ccEEEEec
Q 009558 165 AVDYLSPKYLNRTLPELARVSV-DGVVIFAG 194 (532)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 194 (532)
++.++.. .-+.|-++.||-. .|.++++.
T Consensus 195 ~~~h~~d--~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 195 SGEHMPD--KRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred chhccCC--HHHHHHHHHHHcCCCcEEEEEE
Confidence 9999854 2356778888765 56766654
No 50
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=79.48 E-value=2.5 Score=33.35 Aligned_cols=97 Identities=23% Similarity=0.212 Sum_probs=58.1
Q ss_pred eeeeecCCchhHhHhhhccccccccccccccccchhhhhHHHH-----HhceeeeeeccCCCCCCCCceeEEEEcccccc
Q 009558 94 KVLHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDADANCRSLV-----RKGIVRVADIKFPLPYRAKSFSLVIVSDAVDY 168 (532)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (532)
+||++|..+-.....+++....+.+|+|+-+ ++-..++... .+--+...|+.-..+....+|.+|++...+.+
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISP--VALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCH--HHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 5899999998887777775667788887532 1112222111 22233445665555446778999999888877
Q ss_pred cChhhhcccccccc-ccccccEEEEe
Q 009558 169 LSPKYLNRTLPELA-RVSVDGVVIFA 193 (532)
Q Consensus 169 ~~~~~~~~~~~~~~-~~~~~~~~~~~ 193 (532)
. +....+.+-.+. .+...|+++++
T Consensus 79 ~-~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 L-VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred h-hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 4 223333333322 24567887775
No 51
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=79.08 E-value=3.5 Score=39.78 Aligned_cols=110 Identities=16% Similarity=0.206 Sum_probs=72.0
Q ss_pred cchHhhHhhhhHHHHHhhcccceeeeecCCchhHhHhhhccccccccccccccccchhhhhHHHHHh-ce----eeeeec
Q 009558 72 SCTLEVQRALPVLKKAYGDSMLKVLHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDADANCRSLVRK-GI----VRVADI 146 (532)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~ 146 (532)
+-+.++++.++.++ -.+||-+|=.+......|.+ ...+..||++.+ ++-..++.++++ |+ +.++|+
T Consensus 17 ~~~~~l~~~l~~~~------~~~vLDiGcG~G~~a~~La~-~g~~V~gvD~S~--~~i~~a~~~~~~~~~~~v~~~~~d~ 87 (197)
T PRK11207 17 RTHSEVLEAVKVVK------PGKTLDLGCGNGRNSLYLAA-NGFDVTAWDKNP--MSIANLERIKAAENLDNLHTAVVDL 87 (197)
T ss_pred CChHHHHHhcccCC------CCcEEEECCCCCHHHHHHHH-CCCEEEEEeCCH--HHHHHHHHHHHHcCCCcceEEecCh
Confidence 44566777776542 26899999998876666665 456778886642 344456665544 22 345777
Q ss_pred cCCCCCCCCceeEEEEcccccccChhhhcccccccccc-ccccEEEE
Q 009558 147 KFPLPYRAKSFSLVIVSDAVDYLSPKYLNRTLPELARV-SVDGVVIF 192 (532)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 192 (532)
. .++. .++|++|+.+.++-|++|.-+-+.+-++.|+ ...|.+++
T Consensus 88 ~-~~~~-~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 88 N-NLTF-DGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred h-hCCc-CCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 4 2333 4679999999999999886666666666665 45676443
No 52
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=77.29 E-value=6.7 Score=41.32 Aligned_cols=97 Identities=18% Similarity=0.164 Sum_probs=63.9
Q ss_pred ceeeeecCCchhHhHhhhccccccccccccccccchh-hhhHHHH-Hhceee--eeeccCCCCCCCCceeEEEEcccccc
Q 009558 93 LKVLHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDAD-ANCRSLV-RKGIVR--VADIKFPLPYRAKSFSLVIVSDAVDY 168 (532)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (532)
++||-||=.|-.....++++......||+|...--.. ..++.+. ..+.+. ..|+. -+|.. .+|.+|+...+|-|
T Consensus 123 ~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie-~lp~~-~~FD~V~s~gvL~H 200 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIE-QLHEL-YAFDTVFSMGVLYH 200 (314)
T ss_pred CEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHH-HCCCC-CCcCEEEEcchhhc
Confidence 5899999999998889888776679999998732111 1122222 122232 23332 13332 48999999999998
Q ss_pred cChhhhcccccccccc-ccccEEEEe
Q 009558 169 LSPKYLNRTLPELARV-SVDGVVIFA 193 (532)
Q Consensus 169 ~~~~~~~~~~~~~~~~-~~~~~~~~~ 193 (532)
+ +.....|-++.|+ ...|.+++.
T Consensus 201 ~--~dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 201 R--KSPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred c--CCHHHHHHHHHHhcCCCCEEEEE
Confidence 7 2345678888885 456787764
No 53
>PLN03059 beta-galactosidase; Provisional
Probab=73.28 E-value=5.9 Score=46.96 Aligned_cols=71 Identities=15% Similarity=0.232 Sum_probs=61.8
Q ss_pred cccHHHHHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCeeEEE--------eccCCcchhHHh
Q 009558 316 HKYKEDVKLMAKTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVT--------LHHSDLPQALED 387 (532)
Q Consensus 316 hrYkEDI~Lm~elGv~ayRFSIsWsRI~P~G~G~vN~~Gi~~Y~~lId~L~~~GIePiVT--------L~HfdlP~~L~d 387 (532)
..|++=++.||++|+|+.-.=+.|.-.+|. +|.+|-+|..--.++|+...+.|+-.++- .-.-.+|.||.+
T Consensus 59 ~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~-~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~ 137 (840)
T PLN03059 59 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPS-PGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKY 137 (840)
T ss_pred HHHHHHHHHHHHcCCCeEEEEecccccCCC-CCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhc
Confidence 457888999999999999999999999999 89999999999999999999999886653 234568888864
No 54
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=71.93 E-value=5.6 Score=41.87 Aligned_cols=95 Identities=14% Similarity=0.122 Sum_probs=62.0
Q ss_pred cceeeeecCCchhHhHhhhcccccccccccccc--ccchhhhhHHHH------HhceeeeeeccCCCCCCCCceeEEEEc
Q 009558 92 MLKVLHVGPETCSVVSKLLKEEDTEAWGVEPYD--LDDADANCRSLV------RKGIVRVADIKFPLPYRAKSFSLVIVS 163 (532)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (532)
-.+||.||=.|-.+.-.|.+. ..+..||+..+ ++.+..+.+.+. ...-..++|+... ..+|++|+.+
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~-g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l----~~~fD~Vv~~ 219 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALE-GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL----SGKYDTVTCL 219 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc----CCCcCEEEEc
Confidence 358999999998887777764 45777876654 333444444331 1122345676432 5789999999
Q ss_pred ccccccChhhhccccccccccccccEEE
Q 009558 164 DAVDYLSPKYLNRTLPELARVSVDGVVI 191 (532)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (532)
|.|-|+...-+.+-+-.|+++...+++|
T Consensus 220 ~vL~H~p~~~~~~ll~~l~~l~~g~liI 247 (315)
T PLN02585 220 DVLIHYPQDKADGMIAHLASLAEKRLII 247 (315)
T ss_pred CEEEecCHHHHHHHHHHHHhhcCCEEEE
Confidence 9998887665666666777776555544
No 55
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=70.97 E-value=6.6 Score=39.19 Aligned_cols=152 Identities=15% Similarity=0.223 Sum_probs=91.6
Q ss_pred cccchHhhHhhhhHHHHHhhcccceeeeecCCchhHhHhhhc---cccccccccccccccchhhhhHHHHHh-ce-----
Q 009558 70 VVSCTLEVQRALPVLKKAYGDSMLKVLHVGPETCSVVSKLLK---EEDTEAWGVEPYDLDDADANCRSLVRK-GI----- 140 (532)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----- 140 (532)
..-|-.++++.+-.+-+.+-..-.+||.||-.|-.....|++ ....+..|||+.+ +.-..|+..+.+ |.
T Consensus 35 ~~p~y~~~~~~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~--~ml~~A~~~~~~~~~~~~v~ 112 (247)
T PRK15451 35 SVPGYSNIISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSP--AMIERCRRHIDAYKAPTPVD 112 (247)
T ss_pred cCCChHHHHHHHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCH--HHHHHHHHHHHhcCCCCCeE
Confidence 445666666666555554433446899999999877666654 3567899998743 223344444332 21
Q ss_pred eeeeeccCCCCCCCCceeEEEEcccccccChhhhcccccccccccc-ccEEEEec-CCCccchhhhhhhccCCCcccccc
Q 009558 141 VRVADIKFPLPYRAKSFSLVIVSDAVDYLSPKYLNRTLPELARVSV-DGVVIFAG-YPGQHRAKVSELSKFGRPAKLRSS 218 (532)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~r~~k~r~s 218 (532)
+..+|+. .+|. .+|++|+++-++.+++|....+.|.++.|+-. .|+++++. +.... ..+.++ --
T Consensus 113 ~~~~d~~-~~~~--~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~-~~~~~~----------~~ 178 (247)
T PRK15451 113 VIEGDIR-DIAI--ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFED-AKVGEL----------LF 178 (247)
T ss_pred EEeCChh-hCCC--CCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCc-chhHHH----------HH
Confidence 2345543 2343 35899999999999998777788899988754 56766654 33222 111111 11
Q ss_pred hhHHHHHHhcccccchHHH
Q 009558 219 TWWIRYFLQNSLEENEVAA 237 (532)
Q Consensus 219 ~~w~~~f~q~~le~ne~~~ 237 (532)
.-|.++..+.++.+.|...
T Consensus 179 ~~~~~~~~~~g~s~~ei~~ 197 (247)
T PRK15451 179 NMHHDFKRANGYSELEISQ 197 (247)
T ss_pred HHHHHHHHHcCCCHHHHHH
Confidence 1355666666776665444
No 56
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=70.06 E-value=3.5 Score=34.91 Aligned_cols=89 Identities=26% Similarity=0.330 Sum_probs=60.5
Q ss_pred eeeecCCchhHhHhhhccc----cccccccccccccchhhhhHHHHH-hc---eeeeeeccCCCCCCCCceeEEEEccc-
Q 009558 95 VLHVGPETCSVVSKLLKEE----DTEAWGVEPYDLDDADANCRSLVR-KG---IVRVADIKFPLPYRAKSFSLVIVSDA- 165 (532)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~- 165 (532)
||-+|..+-.+...|++-- +...+||+.-. ++=..|+...+ .| -..++|+.. ||+...+|.+|+.+..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~--~~l~~~~~~~~~~~~~~~~~~~D~~~-l~~~~~~~D~v~~~~~~ 77 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISP--EMLELAKKRFSEDGPKVRFVQADARD-LPFSDGKFDLVVCSGLS 77 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-H--HHHHHHHHHSHHTTTTSEEEESCTTC-HHHHSSSEEEEEE-TTG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCH--HHHHHHHHhchhcCCceEEEECCHhH-CcccCCCeeEEEEcCCc
Confidence 5677777777777766542 36778876431 23345666554 23 467889966 8888889999999766
Q ss_pred ccccChhhhcccccccccccc
Q 009558 166 VDYLSPKYLNRTLPELARVSV 186 (532)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~ 186 (532)
+.|++|.-+-+-|-+++++-.
T Consensus 78 ~~~~~~~~~~~ll~~~~~~l~ 98 (101)
T PF13649_consen 78 LHHLSPEELEALLRRIARLLR 98 (101)
T ss_dssp GGGSSHHHHHHHHHHHHHTEE
T ss_pred cCCCCHHHHHHHHHHHHHHhC
Confidence 999999988887777777654
No 57
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=69.66 E-value=6.3 Score=38.26 Aligned_cols=97 Identities=18% Similarity=0.203 Sum_probs=61.9
Q ss_pred ceeeeecCCchhHhHhhhcc--cccccccccccc--ccchhhhhHHHHHhc-eeeeeeccCCCCCCCCceeEEEEccccc
Q 009558 93 LKVLHVGPETCSVVSKLLKE--EDTEAWGVEPYD--LDDADANCRSLVRKG-IVRVADIKFPLPYRAKSFSLVIVSDAVD 167 (532)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (532)
.+||-+|-.|......|.+. ...+..|||+.+ ++-+..+++..-... -+..+|+. .+|+...+|.+|+.+..+.
T Consensus 47 ~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~-~~~~~~~~fD~V~~~~~l~ 125 (231)
T TIGR02752 47 TSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAM-ELPFDDNSFDYVTIGFGLR 125 (231)
T ss_pred CEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechh-cCCCCCCCccEEEEecccc
Confidence 58999999999987777764 356889998753 222333333211111 13345662 3566678999999998888
Q ss_pred ccChhhhccccccccccc-cccEEEE
Q 009558 168 YLSPKYLNRTLPELARVS-VDGVVIF 192 (532)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~-~~~~~~~ 192 (532)
+++. ..+.|-++.|+- .+|.+++
T Consensus 126 ~~~~--~~~~l~~~~~~Lk~gG~l~~ 149 (231)
T TIGR02752 126 NVPD--YMQVLREMYRVVKPGGKVVC 149 (231)
T ss_pred cCCC--HHHHHHHHHHHcCcCeEEEE
Confidence 7753 235677777764 4566665
No 58
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=68.60 E-value=9.8 Score=37.69 Aligned_cols=102 Identities=18% Similarity=0.219 Sum_probs=65.5
Q ss_pred cccceeeeecCCchhHhHhhhccc-cccccccccccccchhhhhHHHHHhceeeeeeccCCCCCCCCceeEEEEcccccc
Q 009558 90 DSMLKVLHVGPETCSVVSKLLKEE-DTEAWGVEPYDLDDADANCRSLVRKGIVRVADIKFPLPYRAKSFSLVIVSDAVDY 168 (532)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (532)
+.-.+||.||-.+..+...|.+.- ..+..||++.+ +.-..|+....+--++++|+.-..| ..+|.+|+.+.++.+
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~--~~i~~a~~~~~~~~~~~~d~~~~~~--~~~fD~v~~~~~l~~ 105 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSP--AMLAEARSRLPDCQFVEADIASWQP--PQALDLIFANASLQW 105 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHhCCCCeEEECchhccCC--CCCccEEEEccChhh
Confidence 344689999999998876666542 56889998764 2222333333233356778753222 458999999999999
Q ss_pred cChhhhccccccccccc-cccEEEEecCCCc
Q 009558 169 LSPKYLNRTLPELARVS-VDGVVIFAGYPGQ 198 (532)
Q Consensus 169 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 198 (532)
+.. .-+.|.++.|+- ..|.+++.. |+.
T Consensus 106 ~~d--~~~~l~~~~~~LkpgG~~~~~~-~~~ 133 (258)
T PRK01683 106 LPD--HLELFPRLVSLLAPGGVLAVQM-PDN 133 (258)
T ss_pred CCC--HHHHHHHHHHhcCCCcEEEEEC-CCC
Confidence 853 234566777764 477777753 443
No 59
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=68.30 E-value=14 Score=35.69 Aligned_cols=92 Identities=18% Similarity=0.242 Sum_probs=53.2
Q ss_pred cceeeeecCCchhHhHhhhccccccccccccccccchhhhhHHHH-Hhce----eeeeeccCCCCCCCCceeEEEEcccc
Q 009558 92 MLKVLHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDADANCRSLV-RKGI----VRVADIKFPLPYRAKSFSLVIVSDAV 166 (532)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (532)
-.+||.||..|-.... +|.+-..+..|||.. ++.-..|+... +-|+ ++..|..-++| ..++|.+|++.-+.
T Consensus 79 ~~~VLeiG~GsG~~t~-~la~~~~~v~~vd~~--~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~I~~~~~~ 154 (212)
T PRK00312 79 GDRVLEIGTGSGYQAA-VLAHLVRRVFSVERI--KTLQWEAKRRLKQLGLHNVSVRHGDGWKGWP-AYAPFDRILVTAAA 154 (212)
T ss_pred CCEEEEECCCccHHHH-HHHHHhCEEEEEeCC--HHHHHHHHHHHHHCCCCceEEEECCcccCCC-cCCCcCEEEEccCc
Confidence 3589999999877544 333333467888866 33333343332 2244 23344433333 13789999998777
Q ss_pred cccChhhhccccccccccccccEEEEec
Q 009558 167 DYLSPKYLNRTLPELARVSVDGVVIFAG 194 (532)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (532)
.++..+ + +..+...|++++.=
T Consensus 155 ~~~~~~-l------~~~L~~gG~lv~~~ 175 (212)
T PRK00312 155 PEIPRA-L------LEQLKEGGILVAPV 175 (212)
T ss_pred hhhhHH-H------HHhcCCCcEEEEEE
Confidence 666332 2 23466788877743
No 60
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=67.79 E-value=11 Score=35.73 Aligned_cols=98 Identities=20% Similarity=0.273 Sum_probs=59.7
Q ss_pred ceeeeecCCchhHhHhhhcccc--ccccccccccccchhhhhHHHHH---hceeeeeeccCCCCCCCCceeEEEEccccc
Q 009558 93 LKVLHVGPETCSVVSKLLKEED--TEAWGVEPYDLDDADANCRSLVR---KGIVRVADIKFPLPYRAKSFSLVIVSDAVD 167 (532)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (532)
..||.+|..+-.+...+++.-. ....|+|+-+ ++-..|+.... +--+...|+. .+|+...+|++|+.+..+.
T Consensus 41 ~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~--~~~~~~~~~~~~~~~i~~~~~d~~-~~~~~~~~~D~i~~~~~~~ 117 (223)
T TIGR01934 41 QKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSS--EMLEVAKKKSELPLNIEFIQADAE-ALPFEDNSFDAVTIAFGLR 117 (223)
T ss_pred CeEEEeCCCCChhHHHHHHhcCCCceEEEEECCH--HHHHHHHHHhccCCCceEEecchh-cCCCCCCcEEEEEEeeeeC
Confidence 4899999988777666666554 3677776521 22233333222 1234556664 4667788999999988876
Q ss_pred ccChhhhccccccccc-cccccEEEEecC
Q 009558 168 YLSPKYLNRTLPELAR-VSVDGVVIFAGY 195 (532)
Q Consensus 168 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 195 (532)
++.. +-..|-++.+ +...|.+++.++
T Consensus 118 ~~~~--~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 118 NVTD--IQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred Cccc--HHHHHHHHHHHcCCCcEEEEEEe
Confidence 5532 2223333333 356888888764
No 61
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=66.50 E-value=5.5 Score=40.70 Aligned_cols=109 Identities=14% Similarity=0.161 Sum_probs=70.0
Q ss_pred chHhhHhhhhHHHHHhhcccceeeeecCCchhHhHhhhccccccccccccccccchhhhhHHHHHh-ce---eeeeeccC
Q 009558 73 CTLEVQRALPVLKKAYGDSMLKVLHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDADANCRSLVRK-GI---VRVADIKF 148 (532)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~ 148 (532)
...++..+++.++. .+||.+|=.+......|.+. ..+.-||+.-. .+-..|+...++ |+ +.+.|+.-
T Consensus 108 ~~~~~~~~~~~~~~------~~vLDlGcG~G~~~~~la~~-g~~V~avD~s~--~ai~~~~~~~~~~~l~v~~~~~D~~~ 178 (287)
T PRK12335 108 THSEVLEAVQTVKP------GKALDLGCGQGRNSLYLALL-GFDVTAVDINQ--QSLENLQEIAEKENLNIRTGLYDINS 178 (287)
T ss_pred ccHHHHHHhhccCC------CCEEEeCCCCCHHHHHHHHC-CCEEEEEECCH--HHHHHHHHHHHHcCCceEEEEechhc
Confidence 35567777665431 38999999999887777664 45666665431 223334444432 33 34566653
Q ss_pred CCCCCCCceeEEEEcccccccChhhhccccccccccc-cccEEEE
Q 009558 149 PLPYRAKSFSLVIVSDAVDYLSPKYLNRTLPELARVS-VDGVVIF 192 (532)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 192 (532)
.-. ..+|++|+.+.++-++++..+.+-|-++.|+- .+|++++
T Consensus 179 ~~~--~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 179 ASI--QEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred ccc--cCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 322 67899999999999998877666677766654 4676444
No 62
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=66.35 E-value=7.5 Score=41.08 Aligned_cols=95 Identities=13% Similarity=0.165 Sum_probs=61.3
Q ss_pred eeeeecCCchhHhHhhhccccccccccccccccchhhhhHHHHHh-c-----eeeeeeccCCCCCCCCceeEEEEccccc
Q 009558 94 KVLHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDADANCRSLVRK-G-----IVRVADIKFPLPYRAKSFSLVIVSDAVD 167 (532)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (532)
+||-||-.+-.... .|.+.+.+.+|||+.. +.-..++.-.+. + -++.+|+. .||....+|++|+..+.|.
T Consensus 134 ~ILDIGCG~G~~s~-~La~~g~~V~GID~s~--~~i~~Ar~~~~~~~~~~~i~~~~~dae-~l~~~~~~FD~Vi~~~vLe 209 (322)
T PLN02396 134 KFIDIGCGGGLLSE-PLARMGATVTGVDAVD--KNVKIARLHADMDPVTSTIEYLCTTAE-KLADEGRKFDAVLSLEVIE 209 (322)
T ss_pred EEEEeeCCCCHHHH-HHHHcCCEEEEEeCCH--HHHHHHHHHHHhcCcccceeEEecCHH-HhhhccCCCCEEEEhhHHH
Confidence 79999999887644 4445567899998874 112222222221 1 13444542 3555678999999999999
Q ss_pred ccChhhhccccccccccc-cccEEEEec
Q 009558 168 YLSPKYLNRTLPELARVS-VDGVVIFAG 194 (532)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 194 (532)
++... -..|.++.|+- .+|.++++-
T Consensus 210 Hv~d~--~~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 210 HVANP--AEFCKSLSALTIPNGATVLST 235 (322)
T ss_pred hcCCH--HHHHHHHHHHcCCCcEEEEEE
Confidence 99652 46778888875 455555543
No 63
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=66.20 E-value=12 Score=40.74 Aligned_cols=97 Identities=18% Similarity=0.128 Sum_probs=63.4
Q ss_pred ceeeeecCCchhHhHhhhccccccccccccccccchhhhhHHHHH----hceeeeeeccCCCCCCCCceeEEEEcccccc
Q 009558 93 LKVLHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDADANCRSLVR----KGIVRVADIKFPLPYRAKSFSLVIVSDAVDY 168 (532)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (532)
.+||-||-.+-...-.|.++-..+..||++.. ++-..|+.-.. +--+.++|+. -+|+...+|.+|+..+++.|
T Consensus 268 ~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~--~~l~~A~~~~~~~~~~v~~~~~d~~-~~~~~~~~fD~I~s~~~l~h 344 (475)
T PLN02336 268 QKVLDVGCGIGGGDFYMAENFDVHVVGIDLSV--NMISFALERAIGRKCSVEFEVADCT-KKTYPDNSFDVIYSRDTILH 344 (475)
T ss_pred CEEEEEeccCCHHHHHHHHhcCCEEEEEECCH--HHHHHHHHHhhcCCCceEEEEcCcc-cCCCCCCCEEEEEECCcccc
Confidence 47999999997766566665567889998863 33333332221 1124467754 35666789999999999999
Q ss_pred cChhhhccccccccccc-cccEEEEec
Q 009558 169 LSPKYLNRTLPELARVS-VDGVVIFAG 194 (532)
Q Consensus 169 ~~~~~~~~~~~~~~~~~-~~~~~~~~~ 194 (532)
+.-+ -+.|.++.|+= .+|.++++-
T Consensus 345 ~~d~--~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 345 IQDK--PALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred cCCH--HHHHHHHHHHcCCCeEEEEEE
Confidence 8532 14567787764 456666653
No 64
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=65.10 E-value=17 Score=38.14 Aligned_cols=85 Identities=20% Similarity=0.326 Sum_probs=58.6
Q ss_pred CCCCcEEeeeechhhhcCccCCCCCCCccceeccccCccCCCCccCCccccccHHHHHHHHHcCCCEEEecccccccccC
Q 009558 266 FPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFAHAGNVLGNGDIACDEYHKYKEDVKLMAKTGLDAYRFSISWSRLIPN 345 (532)
Q Consensus 266 FP~dFlwG~ATSA~QvEGa~~~dGkg~SiWD~~~~~~~~g~~~dva~D~YhrYkEDI~Lm~elGv~ayRFSIsWsRI~P~ 345 (532)
...+|.+|+|.++.++++.. .|++-+ .++.+.=+..-...|..++|.
T Consensus 6 ~~~~f~~G~av~~~~~~~~~-------------------------------~~~~~~--~~~Fn~~t~eN~~Kw~~~e~~ 52 (320)
T PF00331_consen 6 AKHKFPFGAAVNAQQLEDDP-------------------------------RYRELF--AKHFNSVTPENEMKWGSIEPE 52 (320)
T ss_dssp HCTTTEEEEEEBGGGHTHHH-------------------------------HHHHHH--HHH-SEEEESSTTSHHHHESB
T ss_pred HhccCCEEEEechhHcCCcH-------------------------------HHHHHH--HHhCCeeeeccccchhhhcCC
Confidence 45688999999999988731 111111 133333344445789999999
Q ss_pred CCCCCChhHHHHHHHHHHHHHHCCCeeE--EEeccCCcchhHHh
Q 009558 346 GRGPVNPKGLQYYNNLINELISYGIQPH--VTLHHSDLPQALED 387 (532)
Q Consensus 346 G~G~vN~~Gi~~Y~~lId~L~~~GIePi--VTL~HfdlP~~L~d 387 (532)
.|.+| ++-.+++++-+.++||++- .-++|--+|.|+..
T Consensus 53 -~g~~~---~~~~D~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~ 92 (320)
T PF00331_consen 53 -PGRFN---FESADAILDWARENGIKVRGHTLVWHSQTPDWVFN 92 (320)
T ss_dssp -TTBEE----HHHHHHHHHHHHTT-EEEEEEEEESSSS-HHHHT
T ss_pred -CCccC---ccchhHHHHHHHhcCcceeeeeEEEcccccceeee
Confidence 78888 5568999999999999986 45668789999864
No 65
>PRK08317 hypothetical protein; Provisional
Probab=64.44 E-value=7.4 Score=36.99 Aligned_cols=99 Identities=23% Similarity=0.265 Sum_probs=59.8
Q ss_pred ceeeeecCCchhHhHhhhcc--ccccccccccccc--cchhhhhHHHHHhceeeeeeccCCCCCCCCceeEEEEcccccc
Q 009558 93 LKVLHVGPETCSVVSKLLKE--EDTEAWGVEPYDL--DDADANCRSLVRKGIVRVADIKFPLPYRAKSFSLVIVSDAVDY 168 (532)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (532)
.+||.+|..+-.....+.+. ...+..|+++-.- +.+..++.....+--+.++|+. .+|+...+|.+|+...++.+
T Consensus 21 ~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~-~~~~~~~~~D~v~~~~~~~~ 99 (241)
T PRK08317 21 DRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDAD-GLPFPDGSFDAVRSDRVLQH 99 (241)
T ss_pred CEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccc-cCCCCCCCceEEEEechhhc
Confidence 47999999997766555543 2457888887431 2222221111122234556763 35667789999999999998
Q ss_pred cChhhhcccccccccc-ccccEEEEec
Q 009558 169 LSPKYLNRTLPELARV-SVDGVVIFAG 194 (532)
Q Consensus 169 ~~~~~~~~~~~~~~~~-~~~~~~~~~~ 194 (532)
+.- ....|.++.++ ..+|.+++..
T Consensus 100 ~~~--~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 100 LED--PARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred cCC--HHHHHHHHHHHhcCCcEEEEEe
Confidence 843 23345555554 4466666654
No 66
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=64.39 E-value=8.6 Score=40.39 Aligned_cols=98 Identities=18% Similarity=0.147 Sum_probs=65.2
Q ss_pred ceeeeecCCchhHhHhhhccccccccccccccccchhh--hhHHHHHh--ceeeeeeccCCCCCCCCceeEEEEcccccc
Q 009558 93 LKVLHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDADA--NCRSLVRK--GIVRVADIKFPLPYRAKSFSLVIVSDAVDY 168 (532)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (532)
++||-||-.+-.....+++.....+.||+|....-... .++.+-.. --+..+|+. .+|+ ..+|++|+...+|.|
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e-~lp~-~~~FD~V~s~~vl~H 201 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIE-QLPA-LKAFDTVFSMGVLYH 201 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHH-HCCC-cCCcCEEEECChhhc
Confidence 68999999999988888887666799999876532221 11111011 123444553 4566 789999999999988
Q ss_pred cChhhhcccccccccc-ccccEEEEec
Q 009558 169 LSPKYLNRTLPELARV-SVDGVVIFAG 194 (532)
Q Consensus 169 ~~~~~~~~~~~~~~~~-~~~~~~~~~~ 194 (532)
+.- ....|-++.|+ ...|.+|+..
T Consensus 202 ~~d--p~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 202 RRS--PLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred cCC--HHHHHHHHHHhcCCCcEEEEEE
Confidence 642 23456677766 5678888753
No 67
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=62.71 E-value=19 Score=34.49 Aligned_cols=62 Identities=18% Similarity=0.398 Sum_probs=45.2
Q ss_pred cccHHHHHHHHHcCCCEEEecccccccc-----cCC--CCCCChhHHHHHHHHHHHHHHCCCeeEEEeccC
Q 009558 316 HKYKEDVKLMAKTGLDAYRFSISWSRLI-----PNG--RGPVNPKGLQYYNNLINELISYGIQPHVTLHHS 379 (532)
Q Consensus 316 hrYkEDI~Lm~elGv~ayRFSIsWsRI~-----P~G--~G~vN~~Gi~~Y~~lId~L~~~GIePiVTL~Hf 379 (532)
.+|+++++.|+++|+++.=+ .|+..- |.. .+.......+....++++.-++||+.+|.|+..
T Consensus 20 ~~W~~~~~~m~~~GidtlIl--q~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~ 88 (166)
T PF14488_consen 20 AQWREEFRAMKAIGIDTLIL--QWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFD 88 (166)
T ss_pred HHHHHHHHHHHHcCCcEEEE--EEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCC
Confidence 46899999999999999743 244431 110 112233456788999999999999999999875
No 68
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=59.90 E-value=74 Score=33.54 Aligned_cols=161 Identities=20% Similarity=0.283 Sum_probs=93.9
Q ss_pred CCccCCccccccHHHHHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCeeEEEeccCC-----c
Q 009558 307 NGDIACDEYHKYKEDVKLMAKTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHSD-----L 381 (532)
Q Consensus 307 ~~dva~D~YhrYkEDI~Lm~elGv~ayRFSIsWsRI~P~G~G~vN~~Gi~~Y~~lId~L~~~GIePiVTL~Hfd-----l 381 (532)
+.|-+|..-..|..|+++++.-+. ..|. -| .+ -.-..++.-...+.|++.++.+|--| +
T Consensus 54 n~dGtCKSa~~~~sDLe~l~~~t~-~IR~-----------Y~-sD---Cn~le~v~pAa~~~g~kv~lGiw~tdd~~~~~ 117 (305)
T COG5309 54 NDDGTCKSADQVASDLELLASYTH-SIRT-----------YG-SD---CNTLENVLPAAEASGFKVFLGIWPTDDIHDAV 117 (305)
T ss_pred CCCCCCcCHHHHHhHHHHhccCCc-eEEE-----------ee-cc---chhhhhhHHHHHhcCceEEEEEeeccchhhhH
Confidence 345578888999999999998876 3333 12 12 22245788888999999999998543 3
Q ss_pred c-hhHH--hhhCCccccceE--EecccccCCCcch--------hhc---ccCCCCCCCChhH-------HhhhcCCCcee
Q 009558 382 P-QALE--DEYGGWINRMIV--VANPLVYGDYPKI--------MKQ---NAGSRLPAFTDHE-------SQQIKGSADFI 438 (532)
Q Consensus 382 P-~~L~--d~~GGW~n~~~v--FlDPi~~GdYP~~--------m~e---~lGsrLP~FT~eE-------~elIkgslDFL 438 (532)
- +.+. ..++||-.-..| =+|.+..++-+.. +|. ..|-..|.-|-+. .++++. .||+
T Consensus 118 ~~til~ay~~~~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~gpV~T~dsw~~~~~np~l~~~-SDfi 196 (305)
T COG5309 118 EKTILSAYLPYNGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYDGPVTTVDSWNVVINNPELCQA-SDFI 196 (305)
T ss_pred HHHHHHHHhccCCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCCceeecccceeeeCChHHhhh-hhhh
Confidence 2 1121 126899765554 4566666666542 222 2233344333322 234433 3899
Q ss_pred eeecccceeeecCCCCcccCCCCCCCCccccccccCCCCCCCCCchHHHHHHHHHHHHcCC-CCEEEEeCCCCC
Q 009558 439 GVINYYTVYIKDNPSSLKQKHRDWSADTATKFFFKQDTAASSNEPSSLQIVLEYFKQVYGN-PPIYIHENGSLS 511 (532)
Q Consensus 439 GINYYTs~~Vka~~~~~~~~~~~~~~D~~v~~~~~~~t~~GeIyP~GLr~iL~~Ik~rYgn-~PIyITENGig~ 511 (532)
++|-.. ..+.... . + ..+++=+.. |+.++.-.+. ++++|||-|+..
T Consensus 197 a~N~~a----Ywd~~~~-------a-~--------------~~~~f~~~q-~e~vqsa~g~~k~~~v~EtGWPS 243 (305)
T COG5309 197 AANAHA----YWDGQTV-------A-N--------------AAGTFLLEQ-LERVQSACGTKKTVWVTETGWPS 243 (305)
T ss_pred hcccch----hccccch-------h-h--------------hhhHHHHHH-HHHHHHhcCCCccEEEeeccCCC
Confidence 888421 1100000 0 0 113333444 8888888876 899999999976
No 69
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=58.90 E-value=18 Score=36.87 Aligned_cols=115 Identities=19% Similarity=0.233 Sum_probs=71.8
Q ss_pred hhhhHHHHHh-hcccceeeeecCCchhH---hHhhhcccc--ccccccccccccchhhhhHHHHHhce------------
Q 009558 79 RALPVLKKAY-GDSMLKVLHVGPETCSV---VSKLLKEED--TEAWGVEPYDLDDADANCRSLVRKGI------------ 140 (532)
Q Consensus 79 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 140 (532)
..+|-|.+.= ...-.+||.+|=.|-.- ++-+|.|.. ...|+++-+ -.|.+..+-...|+|+
T Consensus 86 ~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~-g~Dis~~~L~~Ar~~~y~~~~~~~~~~~ 164 (264)
T smart00138 86 KVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKIL-ATDIDLKALEKARAGIYPERELEDLPKA 164 (264)
T ss_pred HHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEE-EEECCHHHHHHHHcCCCCHHHHhcCCHH
Confidence 3467664431 22336899998777642 344444432 123443322 2244455555555553
Q ss_pred ------------------------eeeeeccCCCCCCCCceeEEEEcccccccChhhhccccccccccccccEEEEecC
Q 009558 141 ------------------------VRVADIKFPLPYRAKSFSLVIVSDAVDYLSPKYLNRTLPELARVSVDGVVIFAGY 195 (532)
Q Consensus 141 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (532)
.+++|+-- +|+...+|.+|+..+.|-|+++.-..+.+.++.|+=..|=.++.|.
T Consensus 165 ~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~-~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 165 LLARYFSRVEDKYRVKPELKERVRFAKHNLLA-ESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred HHhhhEEeCCCeEEEChHHhCcCEEeeccCCC-CCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 12345533 3445678999999999999999888999999999888877777774
No 70
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=58.55 E-value=17 Score=30.99 Aligned_cols=99 Identities=13% Similarity=0.134 Sum_probs=55.0
Q ss_pred cceeeeecCCchhHhHhhhcc-cccccccccccc--ccchhhhhHHHH-HhceeeeeeccCCCCCCCCceeEEEEccccc
Q 009558 92 MLKVLHVGPETCSVVSKLLKE-EDTEAWGVEPYD--LDDADANCRSLV-RKGIVRVADIKFPLPYRAKSFSLVIVSDAVD 167 (532)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (532)
-.+||-+|..+=.....|++. .+.+.+|||+.+ ++-+..+++.+- .+=-+...|+...++.=.++|..|+++-...
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~ 99 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSGG 99 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcch
Confidence 358999999886666666665 247899998753 222333333331 1112223454433444346899998865432
Q ss_pred ccChhhhcccccccccc-ccccEEEEecC
Q 009558 168 YLSPKYLNRTLPELARV-SVDGVVIFAGY 195 (532)
Q Consensus 168 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 195 (532)
- +.+.+.++.|+ ..+|.++++.+
T Consensus 100 ~-----~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 100 L-----LQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred h-----HHHHHHHHHHHcCCCCEEEEEec
Confidence 2 22444444443 35677777653
No 71
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=57.97 E-value=36 Score=34.42 Aligned_cols=100 Identities=21% Similarity=0.229 Sum_probs=61.2
Q ss_pred HHHHHhhcccceeeeecCCchhHhHhhhccc----cccccccccccccchhhhhHHHHHhceeeeeeccCCCCCCCCcee
Q 009558 83 VLKKAYGDSMLKVLHVGPETCSVVSKLLKEE----DTEAWGVEPYDLDDADANCRSLVRKGIVRVADIKFPLPYRAKSFS 158 (532)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (532)
.|.+.....-.+||.+|-.|-.....|.+.- ..+.-||++.. ++=..++.-...--+.++|+. .||+...||+
T Consensus 77 ~l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~--~~l~~A~~~~~~~~~~~~d~~-~lp~~~~sfD 153 (272)
T PRK11088 77 LLAERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISK--VAIKYAAKRYPQVTFCVASSH-RLPFADQSLD 153 (272)
T ss_pred HHHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCH--HHHHHHHHhCCCCeEEEeecc-cCCCcCCcee
Confidence 3444434444679999999999877776432 12568887743 111111111111125678875 5788889999
Q ss_pred EEEEcccccccChhhhccccccccccc-cccEEEEec
Q 009558 159 LVIVSDAVDYLSPKYLNRTLPELARVS-VDGVVIFAG 194 (532)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 194 (532)
+|+... +|. .+.|+.||= .+|.+|+..
T Consensus 154 ~I~~~~-----~~~----~~~e~~rvLkpgG~li~~~ 181 (272)
T PRK11088 154 AIIRIY-----APC----KAEELARVVKPGGIVITVT 181 (272)
T ss_pred EEEEec-----CCC----CHHHHHhhccCCCEEEEEe
Confidence 998654 354 356888874 477777754
No 72
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=56.12 E-value=7.8 Score=37.62 Aligned_cols=132 Identities=16% Similarity=0.087 Sum_probs=77.3
Q ss_pred hhhhHHHHHhhcccceeeeecCCchhHhHhhhcc-cccccccccccc--ccchhhhhHHHH-Hhceeeeeec-c-CCCCC
Q 009558 79 RALPVLKKAYGDSMLKVLHVGPETCSVVSKLLKE-EDTEAWGVEPYD--LDDADANCRSLV-RKGIVRVADI-K-FPLPY 152 (532)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~-~-~~~~~ 152 (532)
.+.+-..+.+++.-.+||-+|-.|-.....|.+. ..+..+|||+.+ ++.+..+++..- ..--+..+|+ . ++..+
T Consensus 28 ~~~~~~~~~~~~~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~ 107 (202)
T PRK00121 28 PAPLDWAELFGNDAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMF 107 (202)
T ss_pred CCCCCHHHHcCCCCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHc
Confidence 4455567888888899999999999888877654 356899999876 444555544321 1112456777 3 23226
Q ss_pred CCCceeEEEEcccccccC-hhhhc-----ccccccccc-ccccEEEEecCC-CccchhhhhhhccC
Q 009558 153 RAKSFSLVIVSDAVDYLS-PKYLN-----RTLPELARV-SVDGVVIFAGYP-GQHRAKVSELSKFG 210 (532)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~ 210 (532)
...+|++|++.-...+.. +...+ ..|-++.|+ ..+|+++++-.+ ...+.-.+.+++.|
T Consensus 108 ~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g 173 (202)
T PRK00121 108 PDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEG 173 (202)
T ss_pred CccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCc
Confidence 678899998643222211 12222 234555544 457888876533 33333344444444
No 73
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=55.50 E-value=16 Score=30.84 Aligned_cols=100 Identities=22% Similarity=0.226 Sum_probs=60.5
Q ss_pred ceeeeecCCchhHhHhhhc-ccccccccccccc--ccchhhhhHH--HHHhceeeeeeccCCCCCCCCceeEEEEcc-cc
Q 009558 93 LKVLHVGPETCSVVSKLLK-EEDTEAWGVEPYD--LDDADANCRS--LVRKGIVRVADIKFPLPYRAKSFSLVIVSD-AV 166 (532)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 166 (532)
.+||.+|-.|-.+.-.|++ ....+..|||+.+ ++-+..+.+. +-.+=-+..+|+ ...+--...|.+|+.+. .+
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~~~~~ 81 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVICSGFTL 81 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEECSGSG
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEECCCcc
Confidence 4799999999988888887 4788899998743 2223333311 111222566888 34444445599999999 66
Q ss_pred cccCh-hhhcccccccc-ccccccEEEEe
Q 009558 167 DYLSP-KYLNRTLPELA-RVSVDGVVIFA 193 (532)
Q Consensus 167 ~~~~~-~~~~~~~~~~~-~~~~~~~~~~~ 193 (532)
+.+-+ ...-+.|-.+. .+...|+++++
T Consensus 82 ~~~~~~~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 82 HFLLPLDERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp GGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 64444 22333333333 34456666653
No 74
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=55.35 E-value=37 Score=33.02 Aligned_cols=66 Identities=29% Similarity=0.369 Sum_probs=42.0
Q ss_pred ceeeeecCCchhHhHhhhccc-cccccccccccccchhhhhHHHHH-hc----eeeeeeccCCCCCCCCceeEEEE
Q 009558 93 LKVLHVGPETCSVVSKLLKEE-DTEAWGVEPYDLDDADANCRSLVR-KG----IVRVADIKFPLPYRAKSFSLVIV 162 (532)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~ 162 (532)
.+||-+|..+..+...+.+.- .....|+|... .+-..|+..++ .| -+..+|+.-+++ ..+|++||.
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~--~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~--~~~fD~Vi~ 160 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERPDARVTAVDISP--EALAVARKNAARLGLDNVTFLQSDWFEPLP--GGKFDLIVS 160 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHHcCCCeEEEEECchhccCc--CCceeEEEE
Confidence 589999999999888887652 45777887542 23333433333 23 245566644443 578999875
No 75
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=55.27 E-value=1.4 Score=35.50 Aligned_cols=43 Identities=23% Similarity=0.338 Sum_probs=34.8
Q ss_pred CCCchHHHHHHHHHHHHcCCCCEEEEeC-CCCCCChhhhhhhhh
Q 009558 480 SNEPSSLQIVLEYFKQVYGNPPIYIHEN-GSLSLSLSIYLSIYL 522 (532)
Q Consensus 480 eIyP~GLr~iL~~Ik~rYgn~PIyITEN-Gig~~d~~~~~~~~~ 522 (532)
.+.|+.|..++..|.++||+..=|+.+. |+...+.+.+++.||
T Consensus 25 ~~~~e~l~~~l~~i~~~yGs~e~Yl~~~lgl~~~~i~~Lr~~lL 68 (68)
T PF13348_consen 25 SVRPEYLEAALDAIDERYGSVENYLREELGLSEEDIERLRERLL 68 (68)
T ss_dssp S--HHHHHHHHHHHHHHHSSHHHHHHHT-T--HHHHHHHHHHHC
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHcCCCCHHHHHHHHHHcC
Confidence 4679999999999999999987788555 999999999999986
No 76
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=54.98 E-value=33 Score=35.56 Aligned_cols=60 Identities=13% Similarity=0.314 Sum_probs=38.8
Q ss_pred HHHHHHHHHcCCCEEEecc--ccccc--------cc--CCC------CCCChhHHHHHHHHHHHHHHCCCeeEEEecc
Q 009558 319 KEDVKLMAKTGLDAYRFSI--SWSRL--------IP--NGR------GPVNPKGLQYYNNLINELISYGIQPHVTLHH 378 (532)
Q Consensus 319 kEDI~Lm~elGv~ayRFSI--sWsRI--------~P--~G~------G~vN~~Gi~~Y~~lId~L~~~GIePiVTL~H 378 (532)
++=++..++-|+|..|+.+ .|... .| ..+ ..+|++=+++-+++|+.|.++||+|.+-+.|
T Consensus 33 ~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~w 110 (289)
T PF13204_consen 33 EQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGIEAALVPFW 110 (289)
T ss_dssp HHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-EEEEESS-
T ss_pred HHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEEE
Confidence 3446778999999999988 55443 11 111 2389999999999999999999999888777
No 77
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=54.39 E-value=11 Score=37.69 Aligned_cols=99 Identities=23% Similarity=0.314 Sum_probs=55.7
Q ss_pred cceeeeecCCchhHhHhhhccccccccccc--cccccchhhhhHHHHHhceeeeeeccCCCCCCCCceeEEEEccccccc
Q 009558 92 MLKVLHVGPETCSVVSKLLKEEDTEAWGVE--PYDLDDADANCRSLVRKGIVRVADIKFPLPYRAKSFSLVIVSDAVDYL 169 (532)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (532)
-.++|-+|= .+++.+..|-.--...-.++ |--|+-+...|+.+- .=-++++||.-..| ...|.||++|..+=||
T Consensus 44 y~~alEvGC-s~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~~-~V~~~~~dvp~~~P--~~~FDLIV~SEVlYYL 119 (201)
T PF05401_consen 44 YRRALEVGC-SIGVLTERLAPRCDRLLAVDISPRALARARERLAGLP-HVEWIQADVPEFWP--EGRFDLIVLSEVLYYL 119 (201)
T ss_dssp EEEEEEE---TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-S-SEEEEES-TTT-----SS-EEEEEEES-GGGS
T ss_pred cceeEecCC-CccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCCC-CeEEEECcCCCCCC--CCCeeEEEEehHhHcC
Confidence 345788884 34556655555444444443 222333444444431 11235566655444 7899999999999999
Q ss_pred Ch-hhhcccccccc-ccccccEEEEec
Q 009558 170 SP-KYLNRTLPELA-RVSVDGVVIFAG 194 (532)
Q Consensus 170 ~~-~~~~~~~~~~~-~~~~~~~~~~~~ 194 (532)
++ .-|-+.+-.|+ .+..+|.+|+..
T Consensus 120 ~~~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 120 DDAEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp SSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 98 45666666554 488999999954
No 78
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=54.06 E-value=26 Score=31.82 Aligned_cols=102 Identities=21% Similarity=0.346 Sum_probs=69.7
Q ss_pred cccceeeeecCCchhHhHhhhcc--ccccccccccccccchhhhhHHHHH-hce----eeeeeccCCCC--CCCCceeEE
Q 009558 90 DSMLKVLHVGPETCSVVSKLLKE--EDTEAWGVEPYDLDDADANCRSLVR-KGI----VRVADIKFPLP--YRAKSFSLV 160 (532)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~--~~~~~~~~~ 160 (532)
++-.+||.+|-.|....-.|+++ ...+..||+.-+ ++=..||...+ .|+ +.++|+.= || +. ..|++|
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~--~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~-~~~D~I 77 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISE--EMIEYAKKRAKELGLDNIEFIQGDIED-LPQELE-EKFDII 77 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSH--HHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSS-TTEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcH--HHHHHhhcccccccccccceEEeehhc-cccccC-CCeeEE
Confidence 35578999999999999888853 256788887542 34444555433 344 35678876 77 76 999999
Q ss_pred EEcccccccChhhhccccccccccccccEEEEecCCC
Q 009558 161 IVSDAVDYLSPKYLNRTLPELARVSVDGVVIFAGYPG 197 (532)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (532)
|...++.++... .+.|-.+.|+-.+|-+++...+.
T Consensus 78 ~~~~~l~~~~~~--~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 78 ISNGVLHHFPDP--EKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEESTGGGTSHH--HHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEcCchhhccCH--HHHHHHHHHHcCCCcEEEEEECC
Confidence 999999776643 35666888877766555555444
No 79
>smart00642 Aamy Alpha-amylase domain.
Probab=53.48 E-value=36 Score=32.43 Aligned_cols=67 Identities=13% Similarity=0.253 Sum_probs=45.7
Q ss_pred ccccHHHHHHHHHcCCCEEEecccccccc---------cCCCCCCCh--hHHHHHHHHHHHHHHCCCeeEEE--eccCCc
Q 009558 315 YHKYKEDVKLMAKTGLDAYRFSISWSRLI---------PNGRGPVNP--KGLQYYNNLINELISYGIQPHVT--LHHSDL 381 (532)
Q Consensus 315 YhrYkEDI~Lm~elGv~ayRFSIsWsRI~---------P~G~G~vN~--~Gi~~Y~~lId~L~~~GIePiVT--L~Hfdl 381 (532)
+....+-++-+++||+++.-++--+.... |..--.+++ -..+=+++++++++++||++++. +.|-.-
T Consensus 18 ~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 18 LQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINHTSD 97 (166)
T ss_pred HHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 44456777889999999998876554442 111112221 13566899999999999999976 567554
No 80
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=52.96 E-value=18 Score=34.79 Aligned_cols=96 Identities=16% Similarity=0.274 Sum_probs=58.1
Q ss_pred ceeeeecCCchhHhHhhhccccccccccccccccchhhhhH-HHHHhce--eee--eecc-CCCCCCCCceeEEEEcccc
Q 009558 93 LKVLHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDADANCR-SLVRKGI--VRV--ADIK-FPLPYRAKSFSLVIVSDAV 166 (532)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~--~~~~-~~~~~~~~~~~~~~~~~~~ 166 (532)
.+||.+|..+-.....|.+. ..+..|+|+-. ..-..|+ .+.+.++ +++ +|+. ++.+. +.+|.+|+++..+
T Consensus 47 ~~vLdlG~G~G~~~~~l~~~-~~~v~~iD~s~--~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~D~i~~~~~l 122 (224)
T TIGR01983 47 LRVLDVGCGGGLLSEPLARL-GANVTGIDASE--ENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKG-AKSFDVVTCMEVL 122 (224)
T ss_pred CeEEEECCCCCHHHHHHHhc-CCeEEEEeCCH--HHHHHHHHHHHHcCCCceEEEeCCHHHhhcCC-CCCccEEEehhHH
Confidence 48999999998877666654 34577777632 1112222 2333444 443 3432 33333 4689999999999
Q ss_pred cccChhhhcccccccccc-ccccEEEEec
Q 009558 167 DYLSPKYLNRTLPELARV-SVDGVVIFAG 194 (532)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 194 (532)
.+... +...|.++.++ ..+|.++++.
T Consensus 123 ~~~~~--~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 123 EHVPD--PQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred HhCCC--HHHHHHHHHHhcCCCcEEEEEe
Confidence 88753 34566666554 5567776654
No 81
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=52.49 E-value=9.6 Score=38.93 Aligned_cols=46 Identities=20% Similarity=0.261 Sum_probs=30.7
Q ss_pred ccccHHHHHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCeeEEEec
Q 009558 315 YHKYKEDVKLMAKTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH 377 (532)
Q Consensus 315 YhrYkEDI~Lm~elGv~ayRFSIsWsRI~P~G~G~vN~~Gi~~Y~~lId~L~~~GIePiVTL~ 377 (532)
...++.|+++||+||+|+.|++. .|. + .++++.|=+.||-.+.-+.
T Consensus 35 ~~~~~~d~~l~k~~G~N~iR~~h-----~p~-----~-------~~~~~~cD~~GilV~~e~~ 80 (298)
T PF02836_consen 35 DEAMERDLELMKEMGFNAIRTHH-----YPP-----S-------PRFYDLCDELGILVWQEIP 80 (298)
T ss_dssp HHHHHHHHHHHHHTT-SEEEETT-----S-------S-------HHHHHHHHHHT-EEEEE-S
T ss_pred HHHHHHHHHHHHhcCcceEEccc-----ccC-----c-------HHHHHHHhhcCCEEEEecc
Confidence 56889999999999999999954 222 1 2345567778998876543
No 82
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=52.11 E-value=1.3e+02 Score=32.36 Aligned_cols=89 Identities=22% Similarity=0.428 Sum_probs=53.8
Q ss_pred CCCCCCcEEeeeech-hhhcCccCCCCCCCccceeccccCccCCCCccCCccccccHHH-HHHHHHcCCCEEEecccccc
Q 009558 264 NDFPPGFIFGSGTSA-YQVEGAANEDGRTPSIWDTFAHAGNVLGNGDIACDEYHKYKED-VKLMAKTGLDAYRFSISWSR 341 (532)
Q Consensus 264 ~~FP~dFlwG~ATSA-~QvEGa~~~dGkg~SiWD~~~~~~~~g~~~dva~D~YhrYkED-I~Lm~elGv~ayRFSIsWsR 341 (532)
...|+||+.|+-.|. +|+|-. +++ |..+ ++. ++| ++.+|+.|+|..|+ |
T Consensus 33 ~~~~~dFikGaDis~l~~lE~~---Gvk-------f~d~-----ng~---------~qD~~~iLK~~GvNyvRl-----R 83 (403)
T COG3867 33 ENSPNDFIKGADISSLIELENS---GVK-------FFDT-----NGV---------RQDALQILKNHGVNYVRL-----R 83 (403)
T ss_pred cCChHHhhccccHHHHHHHHHc---Cce-------EEcc-----CCh---------HHHHHHHHHHcCcCeEEE-----E
Confidence 347899999987654 567632 111 2211 111 344 68999999999999 5
Q ss_pred cccC-----CC---CCCChhHHHHHHHHHHHHHHCCCeeEEEec---cCCcch
Q 009558 342 LIPN-----GR---GPVNPKGLQYYNNLINELISYGIQPHVTLH---HSDLPQ 383 (532)
Q Consensus 342 I~P~-----G~---G~vN~~Gi~~Y~~lId~L~~~GIePiVTL~---HfdlP~ 383 (532)
|.-+ |. |.-| -++---++-....+.||++++.+| ||.=|.
T Consensus 84 vwndP~dsngn~yggGnn--D~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPa 134 (403)
T COG3867 84 VWNDPYDSNGNGYGGGNN--DLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPA 134 (403)
T ss_pred EecCCccCCCCccCCCcc--hHHHHHHHHHHHHhcCcEEEeeccchhhccChh
Confidence 5433 11 1111 122233455567899999999987 465553
No 83
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=52.00 E-value=37 Score=32.92 Aligned_cols=90 Identities=21% Similarity=0.268 Sum_probs=57.2
Q ss_pred ceeeeecCCchhHh---Hhhhcccccccccccccc--ccchhhhhHHHHHhce-----eeeeeccCCCCCCCCceeEEEE
Q 009558 93 LKVLHVGPETCSVV---SKLLKEEDTEAWGVEPYD--LDDADANCRSLVRKGI-----VRVADIKFPLPYRAKSFSLVIV 162 (532)
Q Consensus 93 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 162 (532)
.+||.||-.|.... +++++ ...+..|||..+ ++.+.. .+-+.|+ +..+|..-.+|- .++|+.|++
T Consensus 74 ~~VLDiG~GsG~~~~~la~~~~-~~g~V~~iD~~~~~~~~a~~---~l~~~~~~~~v~~~~~d~~~~~~~-~~~fD~Ii~ 148 (205)
T PRK13944 74 MKILEVGTGSGYQAAVCAEAIE-RRGKVYTVEIVKELAIYAAQ---NIERLGYWGVVEVYHGDGKRGLEK-HAPFDAIIV 148 (205)
T ss_pred CEEEEECcCccHHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHH---HHHHcCCCCcEEEEECCcccCCcc-CCCccEEEE
Confidence 47999999998855 44443 235788988763 222333 3333342 455777655553 468999999
Q ss_pred cccccccChhhhccccccccccccccEEEEec
Q 009558 163 SDAVDYLSPKYLNRTLPELARVSVDGVVIFAG 194 (532)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (532)
.-++..+.+..+ ..+..+|.++++-
T Consensus 149 ~~~~~~~~~~l~-------~~L~~gG~lvi~~ 173 (205)
T PRK13944 149 TAAASTIPSALV-------RQLKDGGVLVIPV 173 (205)
T ss_pred ccCcchhhHHHH-------HhcCcCcEEEEEE
Confidence 988877654322 3466788887744
No 84
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=50.37 E-value=16 Score=37.13 Aligned_cols=120 Identities=19% Similarity=0.241 Sum_probs=61.0
Q ss_pred cCcccchHhhHhhhhHHHHHhhcccceeeeecCCchhHhHhhhccc-cccccccccccccchhhhhHHHHHh--ce----
Q 009558 68 EGVVSCTLEVQRALPVLKKAYGDSMLKVLHVGPETCSVVSKLLKEE-DTEAWGVEPYDLDDADANCRSLVRK--GI---- 140 (532)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~---- 140 (532)
+.+.-+--|.+-.+|.+... .-++||.+|..+..+...+++.. ..+.-+||.- +++-..|+....+ |.
T Consensus 52 ~~~e~~y~e~l~~~~l~~~~---~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid--~~vi~~a~~~~~~~~~~~~~~ 126 (270)
T TIGR00417 52 ERDEFIYHEMIAHVPLFTHP---NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDID--EKVIELSKKFLPSLAGSYDDP 126 (270)
T ss_pred CchHHHHHHHhhhhHhhcCC---CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCC--HHHHHHHHHHhHhhcccccCC
Confidence 33444555666667766532 23499999999999888888764 2333344331 0122334432211 10
Q ss_pred ---eeeeeccCCCCCCCCceeEEEEcccccccChh---hhccccccc-cccccccEEEEe
Q 009558 141 ---VRVADIKFPLPYRAKSFSLVIVSDAVDYLSPK---YLNRTLPEL-ARVSVDGVVIFA 193 (532)
Q Consensus 141 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~ 193 (532)
+.++|----|.-..++|.+||+ |+.+...|. |....+-.+ .++..+|++++.
T Consensus 127 ~v~i~~~D~~~~l~~~~~~yDvIi~-D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 127 RVDLQIDDGFKFLADTENTFDVIIV-DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred ceEEEECchHHHHHhCCCCccEEEE-eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 2233421112223568888764 655443331 111111122 457788888875
No 85
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=49.99 E-value=13 Score=36.15 Aligned_cols=101 Identities=14% Similarity=0.141 Sum_probs=56.1
Q ss_pred cceeeeecCCchhHhHhhhcccccccccccccc--ccchhhhhHHHHHhceeeeeeccCCCCCCCCceeEEEEccccccc
Q 009558 92 MLKVLHVGPETCSVVSKLLKEEDTEAWGVEPYD--LDDADANCRSLVRKGIVRVADIKFPLPYRAKSFSLVIVSDAVDYL 169 (532)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (532)
-.+||.||..+=.....|.+. ..+..|+|+-. ++-+..++.......-+...|+.--+.-..+.|.+||.+..+.++
T Consensus 49 ~~~vLdiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~ 127 (233)
T PRK05134 49 GKRVLDVGCGGGILSESMARL-GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHV 127 (233)
T ss_pred CCeEEEeCCCCCHHHHHHHHc-CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhcc
Confidence 457999999886655555553 45688887621 112222222111111233344432222345789999999999987
Q ss_pred Chhhhcccccccccc-ccccEEEEecC
Q 009558 170 SPKYLNRTLPELARV-SVDGVVIFAGY 195 (532)
Q Consensus 170 ~~~~~~~~~~~~~~~-~~~~~~~~~~~ 195 (532)
.. ....|-.+.++ ..+|.++++..
T Consensus 128 ~~--~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 128 PD--PASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred CC--HHHHHHHHHHHcCCCcEEEEEec
Confidence 42 22334444443 45677777654
No 86
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=49.90 E-value=8.5 Score=41.72 Aligned_cols=39 Identities=36% Similarity=0.627 Sum_probs=34.6
Q ss_pred CCceeEEEEcccccccChhhhcccccccccccccc-EEEE
Q 009558 154 AKSFSLVIVSDAVDYLSPKYLNRTLPELARVSVDG-VVIF 192 (532)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 192 (532)
+.||+.+|.||+.|||+|..+|..+-+|.|+.+.| .|+|
T Consensus 293 ~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~ 332 (380)
T PF11899_consen 293 PGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLW 332 (380)
T ss_pred CCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 67899999999999999999999999999987755 5555
No 87
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=49.66 E-value=43 Score=32.78 Aligned_cols=90 Identities=14% Similarity=0.231 Sum_probs=55.9
Q ss_pred ceeeeecCCchhHhHhhhcc--cccccccccccc--ccchhhhhHHHHHhce----eeeeeccCCCCCCCCceeEEEEcc
Q 009558 93 LKVLHVGPETCSVVSKLLKE--EDTEAWGVEPYD--LDDADANCRSLVRKGI----VRVADIKFPLPYRAKSFSLVIVSD 164 (532)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 164 (532)
++||.||..|.+....|.+. ......|||+.+ ++-+..+++. -|+ +..+|..-.+| -...|++|+++-
T Consensus 78 ~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~---~g~~~v~~~~gd~~~~~~-~~~~fD~I~~~~ 153 (212)
T PRK13942 78 MKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKK---LGYDNVEVIVGDGTLGYE-ENAPYDRIYVTA 153 (212)
T ss_pred CEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHH---cCCCCeEEEECCcccCCC-cCCCcCEEEECC
Confidence 58999999999876554433 346889999863 2223334433 243 45566543333 236799999987
Q ss_pred cccccChhhhccccccccccccccEEEEe
Q 009558 165 AVDYLSPKYLNRTLPELARVSVDGVVIFA 193 (532)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (532)
++..+.+.++ ..+...|.++..
T Consensus 154 ~~~~~~~~l~-------~~LkpgG~lvi~ 175 (212)
T PRK13942 154 AGPDIPKPLI-------EQLKDGGIMVIP 175 (212)
T ss_pred CcccchHHHH-------HhhCCCcEEEEE
Confidence 7765544332 246778887663
No 88
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=49.65 E-value=18 Score=34.58 Aligned_cols=99 Identities=21% Similarity=0.276 Sum_probs=56.7
Q ss_pred ceeeeecCCchhHhHhhhccc--ccccccccccc--ccchhhhhHH--HHHhceeeeeeccCCCCCCCCceeEEEEcccc
Q 009558 93 LKVLHVGPETCSVVSKLLKEE--DTEAWGVEPYD--LDDADANCRS--LVRKGIVRVADIKFPLPYRAKSFSLVIVSDAV 166 (532)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (532)
.+||.+|..+=.+...+++.- ..+..|+|+-. ++.+..+++. +-..-.+...|+. .+|....+|.+|+.+..+
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~D~I~~~~~l 131 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAE-ALPFPDNSFDAVTIAFGL 131 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccc-cCCCCCCCccEEEEeccc
Confidence 579999988755444444433 46788887632 2333333322 1111234456664 355666789999988887
Q ss_pred cccChhhhccccccccc-cccccEEEEec
Q 009558 167 DYLSPKYLNRTLPELAR-VSVDGVVIFAG 194 (532)
Q Consensus 167 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 194 (532)
.++.. +-..|-++.+ +..+|.+++..
T Consensus 132 ~~~~~--~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 132 RNVPD--IDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred ccCCC--HHHHHHHHHHhccCCcEEEEEE
Confidence 76643 2233334333 45678888754
No 89
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=49.63 E-value=19 Score=39.80 Aligned_cols=58 Identities=22% Similarity=0.521 Sum_probs=34.3
Q ss_pred ccHHHHHHHH-HcCCCEEEec--c--ccccccc-CCCC--CCChhHHHHHHHHHHHHHHCCCeeEEEec
Q 009558 317 KYKEDVKLMA-KTGLDAYRFS--I--SWSRLIP-NGRG--PVNPKGLQYYNNLINELISYGIQPHVTLH 377 (532)
Q Consensus 317 rYkEDI~Lm~-elGv~ayRFS--I--sWsRI~P-~G~G--~vN~~Gi~~Y~~lId~L~~~GIePiVTL~ 377 (532)
.+++.+..++ ++|++..||- + ...-..+ ++.| .+| +.+-++++|.|+++||+|+|.|-
T Consensus 40 ~~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Yn---f~~lD~i~D~l~~~g~~P~vel~ 105 (486)
T PF01229_consen 40 DWQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYN---FTYLDQILDFLLENGLKPFVELG 105 (486)
T ss_dssp HHHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE-----HHHHHHHHHHHHCT-EEEEEE-
T ss_pred HHHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCC---hHHHHHHHHHHHHcCCEEEEEEE
Confidence 3566666664 9999999983 1 1111111 1122 144 77889999999999999999874
No 90
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=48.84 E-value=20 Score=38.30 Aligned_cols=97 Identities=20% Similarity=0.271 Sum_probs=60.4
Q ss_pred ceeeeecCCchhHhHhhhcc-ccccccccccccccchhhhhHHHHH-hc-eeeeeeccCCCCCCCCceeEEEEccccccc
Q 009558 93 LKVLHVGPETCSVVSKLLKE-EDTEAWGVEPYDLDDADANCRSLVR-KG-IVRVADIKFPLPYRAKSFSLVIVSDAVDYL 169 (532)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (532)
.+||.||..|=.+...|.+. ...+..||++-+ +.-..++.... ++ -+..+|+. .+|+...+|++||.++++.++
T Consensus 115 ~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~--~mL~~A~~k~~~~~i~~i~gD~e-~lp~~~~sFDvVIs~~~L~~~ 191 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSP--HQLAKAKQKEPLKECKIIEGDAE-DLPFPTDYADRYVSAGSIEYW 191 (340)
T ss_pred CEEEEEecCCcHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHhhhccCCeEEeccHH-hCCCCCCceeEEEEcChhhhC
Confidence 47999999885544444443 345677877632 11122222111 11 13456654 367778899999999999887
Q ss_pred Chhhhcccccccccc-ccccEEEEec
Q 009558 170 SPKYLNRTLPELARV-SVDGVVIFAG 194 (532)
Q Consensus 170 ~~~~~~~~~~~~~~~-~~~~~~~~~~ 194 (532)
... .++|-++.|+ ..+|.+++++
T Consensus 192 ~d~--~~~L~e~~rvLkPGG~LvIi~ 215 (340)
T PLN02490 192 PDP--QRGIKEAYRVLKIGGKACLIG 215 (340)
T ss_pred CCH--HHHHHHHHHhcCCCcEEEEEE
Confidence 643 3577888886 4567877765
No 91
>PLN02808 alpha-galactosidase
Probab=44.09 E-value=89 Score=34.21 Aligned_cols=60 Identities=17% Similarity=0.226 Sum_probs=44.8
Q ss_pred cccccHHHHHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCeeEEEeccCCcc
Q 009558 314 EYHKYKEDVKLMAKTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHSDLP 382 (532)
Q Consensus 314 ~YhrYkEDI~Lm~elGv~ayRFSIsWsRI~P~G~G~vN~~Gi~~Y~~lId~L~~~GIePiVTL~HfdlP 382 (532)
.|..|+.|.+.+++-|++...+--.-. ++ ....+-|..+-++|.+.|-..+..|..|..+
T Consensus 131 s~~~e~~DA~~fA~WGvDylK~D~C~~------~~---~~~~~~y~~m~~AL~~tGRpi~~slc~wg~~ 190 (386)
T PLN02808 131 SLGHEEQDAKTFASWGIDYLKYDNCEN------TG---TSPQERYPKMSKALLNSGRPIFFSLCEWGQE 190 (386)
T ss_pred chHHHHHHHHHHHHhCCCEEeecCcCC------CC---ccHHHHHHHHHHHHHHhCCCeEEEecCCCCC
Confidence 378899999999999999998743211 11 1234679999999999997656688887643
No 92
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=43.19 E-value=1.2e+02 Score=32.41 Aligned_cols=114 Identities=18% Similarity=0.244 Sum_probs=75.7
Q ss_pred HHHHHHHHcCCCEEEecccccccccCCCCCCCh--hHH-HHHHHHHHHHHHCCCeeEEEeccCCcchhHHhhhCCccccc
Q 009558 320 EDVKLMAKTGLDAYRFSISWSRLIPNGRGPVNP--KGL-QYYNNLINELISYGIQPHVTLHHSDLPQALEDEYGGWINRM 396 (532)
Q Consensus 320 EDI~Lm~elGv~ayRFSIsWsRI~P~G~G~vN~--~Gi-~~Y~~lId~L~~~GIePiVTL~HfdlP~~L~d~~GGW~n~~ 396 (532)
.+++.++++|+.+ +.+-|+|=-..|.|...+ .|+ ++=.+++.+|.+.|| +|.|-|-.-....+-- .+...-
T Consensus 112 ~~L~~~~~~GvR~--lgltwn~~N~~g~g~~~~~~~GLs~~Gk~lV~~~N~LgI--iiDlSH~s~kt~~Dvl--~~s~~P 185 (313)
T COG2355 112 DKLELFHALGVRS--LGLTWNRDNLFGDGCYERTGGGLTPFGKELVREMNELGI--IIDLSHLSDKTFWDVL--DLSKAP 185 (313)
T ss_pred HHHHHHHHhCceE--EEeeeccCCcccCccCCCCCCCCCHHHHHHHHHHHhcCC--EEEecccCCccHHHHH--hccCCc
Confidence 5788899999766 466888876666554443 233 334889999999998 6899998887665431 333332
Q ss_pred eEEecccccCCCcchhhcccCCCCCCCChhHHhhhcCCCceeeeecccceee
Q 009558 397 IVVANPLVYGDYPKIMKQNAGSRLPAFTDHESQQIKGSADFIGVINYYTVYI 448 (532)
Q Consensus 397 ~vFlDPi~~GdYP~~m~e~lGsrLP~FT~eE~elIkgslDFLGINYYTs~~V 448 (532)
+++.+-..++-+| .-...++++++.|+.+--+||+|.|.....
T Consensus 186 viaSHSN~~al~~---------h~RNl~D~qlkaI~~~gGvIgv~~~~~fl~ 228 (313)
T COG2355 186 VVASHSNARALVD---------HPRNLSDEQLKAIAETGGVIGVNFIPAFLR 228 (313)
T ss_pred eEEecCCchhccC---------CCCCCCHHHHHHHHhcCCEEEEEeehhhcc
Confidence 3222222222111 112578999999999999999999876544
No 93
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=42.64 E-value=56 Score=37.96 Aligned_cols=72 Identities=18% Similarity=0.277 Sum_probs=60.0
Q ss_pred cccHHHHHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCe------eEEE--eccCCcchhHHh
Q 009558 316 HKYKEDVKLMAKTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQ------PHVT--LHHSDLPQALED 387 (532)
Q Consensus 316 hrYkEDI~Lm~elGv~ayRFSIsWsRI~P~G~G~vN~~Gi~~Y~~lId~L~~~GIe------PiVT--L~HfdlP~~L~d 387 (532)
..|++=|+.++++|+|+...=+-|.-.+|. +|..|-+|.---.++|....++|+- |+|+ .-|-.+|.||..
T Consensus 49 e~W~~~i~k~k~~Gln~IqtYVfWn~Hep~-~g~y~FsG~~DlvkFikl~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~ 127 (649)
T KOG0496|consen 49 EMWPDLIKKAKAGGLNVIQTYVFWNLHEPS-PGKYDFSGRYDLVKFIKLIHKAGLYVILRIGPYICAEWNFGGLPWWLRN 127 (649)
T ss_pred hhhHHHHHHHHhcCCceeeeeeecccccCC-CCcccccchhHHHHHHHHHHHCCeEEEecCCCeEEecccCCCcchhhhh
Confidence 357888999999999999999999999999 8888988888888889999898876 4444 456778988865
Q ss_pred h
Q 009558 388 E 388 (532)
Q Consensus 388 ~ 388 (532)
.
T Consensus 128 ~ 128 (649)
T KOG0496|consen 128 V 128 (649)
T ss_pred C
Confidence 4
No 94
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=41.28 E-value=35 Score=32.28 Aligned_cols=93 Identities=13% Similarity=0.106 Sum_probs=51.5
Q ss_pred ceeeeecCCchhHhHhhhccc-ccccccccccc--ccchhhhhHHHHHhc-eeeeeeccCCCCCCCCceeEEEEcccccc
Q 009558 93 LKVLHVGPETCSVVSKLLKEE-DTEAWGVEPYD--LDDADANCRSLVRKG-IVRVADIKFPLPYRAKSFSLVIVSDAVDY 168 (532)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (532)
.+||-+|..|-.+...+.+.- ..+..|||+.. ++-+..+++.+-... -+..+|+..+++ .+|++|+++....+
T Consensus 33 ~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~---~~~D~v~~~~~~~~ 109 (187)
T PRK08287 33 KHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELP---GKADAIFIGGSGGN 109 (187)
T ss_pred CEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcC---cCCCEEEECCCccC
Confidence 379999999987776666543 35778888753 233333433221011 123356543443 57999887654433
Q ss_pred cChhhhccccccccc-cccccEEEEe
Q 009558 169 LSPKYLNRTLPELAR-VSVDGVVIFA 193 (532)
Q Consensus 169 ~~~~~~~~~~~~~~~-~~~~~~~~~~ 193 (532)
+ ...+.++.+ +..+|.+++.
T Consensus 110 ~-----~~~l~~~~~~Lk~gG~lv~~ 130 (187)
T PRK08287 110 L-----TAIIDWSLAHLHPGGRLVLT 130 (187)
T ss_pred H-----HHHHHHHHHhcCCCeEEEEE
Confidence 2 333333333 4566776663
No 95
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=39.16 E-value=82 Score=31.91 Aligned_cols=54 Identities=17% Similarity=0.196 Sum_probs=39.4
Q ss_pred HHHHHHHHHcCCCEEEeccccc-ccccCCCCCCChhHHHHHHHHHHHHHHCCCeeEEE
Q 009558 319 KEDVKLMAKTGLDAYRFSISWS-RLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVT 375 (532)
Q Consensus 319 kEDI~Lm~elGv~ayRFSIsWs-RI~P~G~G~vN~~Gi~~Y~~lId~L~~~GIePiVT 375 (532)
+|.++.|+++|++.+-++++-+ .+++.-.+ ...++.+.+.++.++++||...++
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~---~~s~~~~~~ai~~l~~~Gi~v~~~ 177 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLDTSQEFYSNIIS---THTYDDRVDTLENAKKAGLKVCSG 177 (296)
T ss_pred HHHHHHHHHcCCCEEEEcccCCHHHHhhccC---CCCHHHHHHHHHHHHHcCCEEEEe
Confidence 7999999999999999999822 12322111 124677889999999999986443
No 96
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=38.81 E-value=41 Score=35.82 Aligned_cols=48 Identities=21% Similarity=0.369 Sum_probs=33.5
Q ss_pred ccHHHHHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCeeEEEecc
Q 009558 317 KYKEDVKLMAKTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHH 378 (532)
Q Consensus 317 rYkEDI~Lm~elGv~ayRFSIsWsRI~P~G~G~vN~~Gi~~Y~~lId~L~~~GIePiVTL~H 378 (532)
..+.||.+|++||+|+.|.= -|-|. .| .+.-+..|.++||-.++.|--
T Consensus 54 ~C~rDi~~l~~LgiNtIRVY----~vdp~----~n------Hd~CM~~~~~aGIYvi~Dl~~ 101 (314)
T PF03198_consen 54 ACKRDIPLLKELGINTIRVY----SVDPS----KN------HDECMSAFADAGIYVILDLNT 101 (314)
T ss_dssp HHHHHHHHHHHHT-SEEEES-------TT----S--------HHHHHHHHHTT-EEEEES-B
T ss_pred HHHHhHHHHHHcCCCEEEEE----EeCCC----CC------HHHHHHHHHhCCCEEEEecCC
Confidence 67899999999999999972 12232 22 567788899999999998854
No 97
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=38.25 E-value=41 Score=33.38 Aligned_cols=98 Identities=23% Similarity=0.274 Sum_probs=63.6
Q ss_pred ceeeeecCCc---hhHhHhhhcccccccccccccc--ccchhhhhHHHHHhc-eeeeeeccCCCCCCCCceeEEEEcccc
Q 009558 93 LKVLHVGPET---CSVVSKLLKEEDTEAWGVEPYD--LDDADANCRSLVRKG-IVRVADIKFPLPYRAKSFSLVIVSDAV 166 (532)
Q Consensus 93 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (532)
.+||+||-.| +.++++|.... +..-+||.++ .+-|..+++.+-... .++++|...++|=.+ .|+.|||+=++
T Consensus 74 ~~VLeIGtGsGY~aAlla~lvg~~-g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~a-pfD~I~v~~a~ 151 (209)
T PF01135_consen 74 DRVLEIGTGSGYQAALLAHLVGPV-GRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEA-PFDRIIVTAAV 151 (209)
T ss_dssp -EEEEES-TTSHHHHHHHHHHSTT-EEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG--SEEEEEESSBB
T ss_pred CEEEEecCCCcHHHHHHHHhcCcc-ceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCC-CcCEEEEeecc
Confidence 4899999875 56778887443 3566888765 334566666554444 378899998888655 59999999999
Q ss_pred cccChhhhccccccccccccccEEEE-ecCCCcc
Q 009558 167 DYLSPKYLNRTLPELARVSVDGVVIF-AGYPGQH 199 (532)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 199 (532)
.-+...++. .+...|.+|+ .+..+.|
T Consensus 152 ~~ip~~l~~-------qL~~gGrLV~pi~~~~~~ 178 (209)
T PF01135_consen 152 PEIPEALLE-------QLKPGGRLVAPIGQGGSQ 178 (209)
T ss_dssp SS--HHHHH-------TEEEEEEEEEEESSSSSE
T ss_pred chHHHHHHH-------hcCCCcEEEEEEccCCce
Confidence 877655543 4567888887 4443434
No 98
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=37.55 E-value=36 Score=40.60 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=21.8
Q ss_pred CccccccHHHHHHHHHcCCCEEEec
Q 009558 312 CDEYHKYKEDVKLMAKTGLDAYRFS 336 (532)
Q Consensus 312 ~D~YhrYkEDI~Lm~elGv~ayRFS 336 (532)
+-.+..+..|+++||++|+|++|.|
T Consensus 317 ~~~~~~~~~dl~lmk~~n~N~vRts 341 (808)
T COG3250 317 VTDEDAMERDLKLMKEANMNSVRTS 341 (808)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEec
Confidence 3446669999999999999999997
No 99
>PLN02361 alpha-amylase
Probab=37.18 E-value=79 Score=34.66 Aligned_cols=67 Identities=18% Similarity=0.339 Sum_probs=48.2
Q ss_pred ccccccHHHHHHHHHcCCCEEEecccccccccCCCC-----CCChh--HHHHHHHHHHHHHHCCCeeEEE--eccC
Q 009558 313 DEYHKYKEDVKLMAKTGLDAYRFSISWSRLIPNGRG-----PVNPK--GLQYYNNLINELISYGIQPHVT--LHHS 379 (532)
Q Consensus 313 D~YhrYkEDI~Lm~elGv~ayRFSIsWsRI~P~G~G-----~vN~~--Gi~~Y~~lId~L~~~GIePiVT--L~Hf 379 (532)
.+|....+.++-+++||+++.=++=...-.-+.|-. .+|.. ..+=++++|+++.++||++++. +.|-
T Consensus 26 ~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH~ 101 (401)
T PLN02361 26 DWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADIVINHR 101 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEEccccc
Confidence 478889999999999999999877655433333311 12211 2455899999999999999976 5673
No 100
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=34.68 E-value=63 Score=33.21 Aligned_cols=104 Identities=14% Similarity=0.177 Sum_probs=56.4
Q ss_pred ceeeeecCCchhHhHhhhcccccccccccccc--ccchhhhhHHHHHhceeeeeeccCCCCCCCCceeEEEEcccccccC
Q 009558 93 LKVLHVGPETCSVVSKLLKEEDTEAWGVEPYD--LDDADANCRSLVRKGIVRVADIKFPLPYRAKSFSLVIVSDAVDYLS 170 (532)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (532)
.+||-||-.|..+.-.+.+-......||+..+ ++-+..|++.---...+.+..-. .++.-..+|.+|+. +.+
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~-~~~~~~~~fDlVva-n~~---- 234 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIY-LEQPIEGKADVIVA-NIL---- 234 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecc-cccccCCCceEEEE-ecC----
Confidence 68999999997655555555445677776442 23333333321111112221111 22333568999975 433
Q ss_pred hhhhcccccccccc-ccccEEEEecCCCccchh
Q 009558 171 PKYLNRTLPELARV-SVDGVVIFAGYPGQHRAK 202 (532)
Q Consensus 171 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 202 (532)
..-+-+.++++.|+ ..+|.+|++|.-..+...
T Consensus 235 ~~~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~ 267 (288)
T TIGR00406 235 AEVIKELYPQFSRLVKPGGWLILSGILETQAQS 267 (288)
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEeCcHhHHHH
Confidence 22234566776555 567899999965444343
No 101
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=34.33 E-value=25 Score=30.67 Aligned_cols=32 Identities=22% Similarity=0.353 Sum_probs=25.8
Q ss_pred CCCCchhHHHHHHHHHhhheeeecCCCccchh
Q 009558 29 RSSPLLSVILLAVGAVLLIGYLYSGSGKTTIE 60 (532)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (532)
..+-|++|.+++|-.||||..+-++|++-.+.
T Consensus 23 ~pn~lMtILivLVIIiLlImlfqsSS~~~~s~ 54 (85)
T PF10717_consen 23 NPNTLMTILIVLVIIILLIMLFQSSSNGNSSS 54 (85)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Confidence 34568888888888999999998988877664
No 102
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=33.05 E-value=78 Score=29.50 Aligned_cols=94 Identities=19% Similarity=0.136 Sum_probs=54.8
Q ss_pred ceeeeecCCchhHhHhhhccccccccccccccccchhhhhHHHHHh---ceeeeeeccCCCCCCCCceeEEEEccccccc
Q 009558 93 LKVLHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDADANCRSLVRK---GIVRVADIKFPLPYRAKSFSLVIVSDAVDYL 169 (532)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (532)
.+||-+||.+..+...|++. ....+|||.-. ++-..++..... =-+..+|+- .++....+|.+| +||.-=++
T Consensus 15 ~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~--~~~~~~~~~~~~~~~v~ii~~D~~-~~~~~~~~~d~v-i~n~Py~~ 89 (169)
T smart00650 15 DTVLEIGPGKGALTEELLER-AARVTAIEIDP--RLAPRLREKFAAADNLTVIHGDAL-KFDLPKLQPYKV-VGNLPYNI 89 (169)
T ss_pred CEEEEECCCccHHHHHHHhc-CCeEEEEECCH--HHHHHHHHHhccCCCEEEEECchh-cCCccccCCCEE-EECCCccc
Confidence 47999999999999999877 67888888652 222223322211 123445542 223333456654 57765556
Q ss_pred ChhhhccccccccccccccEEEE
Q 009558 170 SPKYLNRTLPELARVSVDGVVIF 192 (532)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~ 192 (532)
+..-+.+.+-+.. .-.+|++++
T Consensus 90 ~~~~i~~~l~~~~-~~~~~~l~~ 111 (169)
T smart00650 90 STPILFKLLEEPP-AFRDAVLMV 111 (169)
T ss_pred HHHHHHHHHhcCC-CcceEEEEE
Confidence 6666666654432 225666665
No 103
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=33.01 E-value=64 Score=30.25 Aligned_cols=70 Identities=14% Similarity=0.069 Sum_probs=42.8
Q ss_pred ceeeeecCCchhHhHhhhccccccccccccc--cccchhhhhHHHHHhceeeeeeccCCCCCCCCceeEEEEcccc
Q 009558 93 LKVLHVGPETCSVVSKLLKEEDTEAWGVEPY--DLDDADANCRSLVRKGIVRVADIKFPLPYRAKSFSLVIVSDAV 166 (532)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (532)
.+||-+|..+..+...+.+... +..|||.- -++-+..+|+..-..--+..+|+-- .+ ..+|.+|+.....
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~--~~~fD~Vi~n~p~ 92 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFK-GV--RGKFDVILFNPPY 92 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccc-cc--CCcccEEEECCCC
Confidence 5799999999988777776544 78888753 2334555555432222233456522 22 3489999876543
No 104
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=32.32 E-value=1.2e+02 Score=29.62 Aligned_cols=58 Identities=22% Similarity=0.493 Sum_probs=40.5
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCC-CC-------CCCh--hHHHHHHHHHHHHHHCCCeeEEEe--cc
Q 009558 319 KEDVKLMAKTGLDAYRFSISWSRLIPNG-RG-------PVNP--KGLQYYNNLINELISYGIQPHVTL--HH 378 (532)
Q Consensus 319 kEDI~Lm~elGv~ayRFSIsWsRI~P~G-~G-------~vN~--~Gi~~Y~~lId~L~~~GIePiVTL--~H 378 (532)
.+.++-+++||+++.-++=-+. -|.+ .| .||+ -..+=+++||+++.++||++|+.+ .|
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~--~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH 76 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFE--SPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVPNH 76 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EE--SSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEETSE
T ss_pred HHhhHHHHHcCCCceecccccc--cccccccccceeeeccccccchhhhhhhhhhccccccceEEEeeeccc
Confidence 5668899999999998875444 2211 11 1221 245668999999999999999874 45
No 105
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=32.30 E-value=26 Score=37.20 Aligned_cols=143 Identities=20% Similarity=0.329 Sum_probs=79.5
Q ss_pred HhhHhhhhHHHHHhhcccceeeeecCCchhHhHhhh-ccccc-cccccccccccchhhhhHHHHHhceeeeeecc----C
Q 009558 75 LEVQRALPVLKKAYGDSMLKVLHVGPETCSVVSKLL-KEEDT-EAWGVEPYDLDDADANCRSLVRKGIVRVADIK----F 148 (532)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 148 (532)
..+.+||--|+.+ |..+ +||-|--..+.-|=-.| +..+. +.==+.-|.-.++..-=+-.-++|+--||-.. |
T Consensus 121 ~~i~~ai~~L~~~-g~pv-rIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAf 198 (311)
T PF12147_consen 121 ELIRQAIARLREQ-GRPV-RILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAF 198 (311)
T ss_pred HHHHHHHHHHHhc-CCce-EEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCC
Confidence 3456666666543 4333 56776555554443333 33331 11122223333333333344455654432111 1
Q ss_pred -CCCCCCCc--eeEEEEcccccccCh-hhhccccccccc-cccccEEEEecCCC--ccch--hhhhhhccCCCcccccch
Q 009558 149 -PLPYRAKS--FSLVIVSDAVDYLSP-KYLNRTLPELAR-VSVDGVVIFAGYPG--QHRA--KVSELSKFGRPAKLRSST 219 (532)
Q Consensus 149 -~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~--~~~~~~~~~r~~k~r~s~ 219 (532)
.--|.+-. -.|+|||=..|+.+- .-++++|--|++ +..+|.+|+||+|- |..+ +|.-=-+-|.+=-||..|
T Consensus 199 d~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRs 278 (311)
T PF12147_consen 199 DRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRS 278 (311)
T ss_pred CHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecC
Confidence 00122111 269999999999998 557889999999 89999999999775 3322 222222356777788777
No 106
>PLN00196 alpha-amylase; Provisional
Probab=32.06 E-value=83 Score=34.69 Aligned_cols=66 Identities=15% Similarity=0.173 Sum_probs=46.5
Q ss_pred cccccHHHHHHHHHcCCCEEEecccccccccCCCC-----CCCh---hHHHHHHHHHHHHHHCCCeeEEE--eccC
Q 009558 314 EYHKYKEDVKLMAKTGLDAYRFSISWSRLIPNGRG-----PVNP---KGLQYYNNLINELISYGIQPHVT--LHHS 379 (532)
Q Consensus 314 ~YhrYkEDI~Lm~elGv~ayRFSIsWsRI~P~G~G-----~vN~---~Gi~~Y~~lId~L~~~GIePiVT--L~Hf 379 (532)
+|....+.+.-+++||+++.=++=...-.-+.|-. .+|+ -..+=++++|+++.++||++|+. +.|-
T Consensus 42 ~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~NH~ 117 (428)
T PLN00196 42 WYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHR 117 (428)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECccCc
Confidence 46667889999999999999887655433222311 1321 12345899999999999999976 5663
No 107
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=29.55 E-value=2e+02 Score=31.02 Aligned_cols=106 Identities=15% Similarity=0.248 Sum_probs=66.9
Q ss_pred hhHHHHHhh-cccceeeeecCCchhHhHhhhccccccccccccccccchhhhhHHHHHhce---eeeeeccCCCCCCCCc
Q 009558 81 LPVLKKAYG-DSMLKVLHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDADANCRSLVRKGI---VRVADIKFPLPYRAKS 156 (532)
Q Consensus 81 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 156 (532)
+..|.+..+ ..=.+||-||-.+......|.+.-..+.-||+..+ +.-..|+..++ |+ +..+|..- + ..+
T Consensus 156 ~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~--~~l~~A~~~~~-~l~v~~~~~D~~~-l---~~~ 228 (383)
T PRK11705 156 LDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISA--EQQKLAQERCA-GLPVEIRLQDYRD-L---NGQ 228 (383)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHhc-cCeEEEEECchhh-c---CCC
Confidence 444433333 34468999999888887777765556777776542 12222333332 21 23344421 2 478
Q ss_pred eeEEEEcccccccChhhhcccccccccccc-ccEEEEe
Q 009558 157 FSLVIVSDAVDYLSPKYLNRTLPELARVSV-DGVVIFA 193 (532)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 193 (532)
|.+|+...+++++.++.+...+.++.|+-. +|++++.
T Consensus 229 fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~ 266 (383)
T PRK11705 229 FDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLH 266 (383)
T ss_pred CCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEE
Confidence 999999999999988877777888887654 5666653
No 108
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=27.85 E-value=1.3e+02 Score=30.16 Aligned_cols=98 Identities=19% Similarity=0.236 Sum_probs=51.8
Q ss_pred ccceeeeecCCchhHhHhhhccccccccccccccccchhhhhHHHH-HhceeeeeeccCCCCCCCCceeEEEEccccccc
Q 009558 91 SMLKVLHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDADANCRSLV-RKGIVRVADIKFPLPYRAKSFSLVIVSDAVDYL 169 (532)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (532)
.=.+||-+|-.|-.+.-.+.+....+..||+..+. +-..|+... +.|+ . ..+. ++....+|++|+. +.+
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~--~l~~A~~n~~~~~~-~-~~~~--~~~~~~~fD~Vva-ni~--- 188 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQ--AVEAARENAELNGV-E-LNVY--LPQGDLKADVIVA-NIL--- 188 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHH--HHHHHHHHHHHcCC-C-ceEE--EccCCCCcCEEEE-cCc---
Confidence 34689999999954443444444445777765321 222233333 3343 1 1122 2222227998865 332
Q ss_pred Chhhhcccccccccc-ccccEEEEecCCCcc
Q 009558 170 SPKYLNRTLPELARV-SVDGVVIFAGYPGQH 199 (532)
Q Consensus 170 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 199 (532)
..-+-+.+|++.++ ..+|.+|++|.-..+
T Consensus 189 -~~~~~~l~~~~~~~LkpgG~lilsgi~~~~ 218 (250)
T PRK00517 189 -ANPLLELAPDLARLLKPGGRLILSGILEEQ 218 (250)
T ss_pred -HHHHHHHHHHHHHhcCCCcEEEEEECcHhh
Confidence 11233456777665 457999999855443
No 109
>PRK03612 spermidine synthase; Provisional
Probab=27.43 E-value=1.4e+02 Score=33.71 Aligned_cols=100 Identities=23% Similarity=0.204 Sum_probs=55.7
Q ss_pred ccceeeeecCCchhHhHhhhcccc-ccccccccccccchhhhhHH---H--------HH-hceeeeeeccCCCCCCCCce
Q 009558 91 SMLKVLHVGPETCSVVSKLLKEED-TEAWGVEPYDLDDADANCRS---L--------VR-KGIVRVADIKFPLPYRAKSF 157 (532)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~--------~~-~~~~~~~~~~~~~~~~~~~~ 157 (532)
.-++||.+|-.++.+...++|... .+...||.-+ ++-..||. | -. +=-+.++|..--+.-..++|
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~--~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDP--AMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCH--HHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 457899999999999999998755 6777776411 12222332 0 00 11244567654455456788
Q ss_pred eEEEEcccccccChhhhcc-----cccc-ccccccccEEEEec
Q 009558 158 SLVIVSDAVDYLSPKYLNR-----TLPE-LARVSVDGVVIFAG 194 (532)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~ 194 (532)
++||+ |.-|--.|. .++ -+.. ..++..+|+++...
T Consensus 375 DvIi~-D~~~~~~~~-~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 375 DVIIV-DLPDPSNPA-LGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred CEEEE-eCCCCCCcc-hhccchHHHHHHHHHhcCCCeEEEEec
Confidence 88876 543322221 111 0111 23567788877643
No 110
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=26.96 E-value=1.1e+02 Score=30.46 Aligned_cols=93 Identities=12% Similarity=0.183 Sum_probs=61.1
Q ss_pred cceeeeecCCchhHhHhhhccc-cccccccccccccchhhhhHHHHHhce-eeeeeccCCCCCCCCceeEEEEccccccc
Q 009558 92 MLKVLHVGPETCSVVSKLLKEE-DTEAWGVEPYDLDDADANCRSLVRKGI-VRVADIKFPLPYRAKSFSLVIVSDAVDYL 169 (532)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (532)
-.+||-||-.|..+...|.+.- ..+..|||+.+ +.-..++ ++++ ++.+|+. .++ ...+|++|+.+.++.++
T Consensus 30 ~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~--~~~~~a~---~~~~~~~~~d~~-~~~-~~~~fD~v~~~~~l~~~ 102 (255)
T PRK14103 30 ARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSP--EMVAAAR---ERGVDARTGDVR-DWK-PKPDTDVVVSNAALQWV 102 (255)
T ss_pred CCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCH--HHHHHHH---hcCCcEEEcChh-hCC-CCCCceEEEEehhhhhC
Confidence 3689999999988766665542 46789998753 1111222 2232 4567875 333 24689999999999998
Q ss_pred Chhhhcccccccccc-ccccEEEEe
Q 009558 170 SPKYLNRTLPELARV-SVDGVVIFA 193 (532)
Q Consensus 170 ~~~~~~~~~~~~~~~-~~~~~~~~~ 193 (532)
.. ..+.|.++.|+ ...|.+++.
T Consensus 103 ~d--~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 103 PE--HADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred CC--HHHHHHHHHHhCCCCcEEEEE
Confidence 53 24567777664 567777775
No 111
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=26.72 E-value=41 Score=41.04 Aligned_cols=24 Identities=17% Similarity=0.398 Sum_probs=21.1
Q ss_pred cccccHHHHHHHHHcCCCEEEecc
Q 009558 314 EYHKYKEDVKLMAKTGLDAYRFSI 337 (532)
Q Consensus 314 ~YhrYkEDI~Lm~elGv~ayRFSI 337 (532)
....+++||++||++|+|+.|+|.
T Consensus 353 ~~e~~~~dl~lmK~~g~NavR~sH 376 (1021)
T PRK10340 353 GMDRVEKDIQLMKQHNINSVRTAH 376 (1021)
T ss_pred CHHHHHHHHHHHHHCCCCEEEecC
Confidence 356789999999999999999963
No 112
>PLN02784 alpha-amylase
Probab=26.47 E-value=1.4e+02 Score=36.04 Aligned_cols=67 Identities=18% Similarity=0.303 Sum_probs=49.0
Q ss_pred ccccccHHHHHHHHHcCCCEEEecccccccccCCCCC-----CChh--HHHHHHHHHHHHHHCCCeeEEE--eccC
Q 009558 313 DEYHKYKEDVKLMAKTGLDAYRFSISWSRLIPNGRGP-----VNPK--GLQYYNNLINELISYGIQPHVT--LHHS 379 (532)
Q Consensus 313 D~YhrYkEDI~Lm~elGv~ayRFSIsWsRI~P~G~G~-----vN~~--Gi~~Y~~lId~L~~~GIePiVT--L~Hf 379 (532)
.+|....+.++-+++||+++.=++=...-.-+.|-.. +|.. ..+=++++|+++.++||.+|+. +.|-
T Consensus 518 ~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDiViNH~ 593 (894)
T PLN02784 518 RWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDAVLNHR 593 (894)
T ss_pred chHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEECcccc
Confidence 5788899999999999999998766544443433111 2221 2455899999999999999976 5673
No 113
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=25.78 E-value=43 Score=40.87 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.2
Q ss_pred cccccHHHHHHHHHcCCCEEEecc
Q 009558 314 EYHKYKEDVKLMAKTGLDAYRFSI 337 (532)
Q Consensus 314 ~YhrYkEDI~Lm~elGv~ayRFSI 337 (532)
....+++||++||++|+|+.|+|.
T Consensus 369 t~e~~~~di~lmK~~g~NaVR~sH 392 (1027)
T PRK09525 369 DEETMVQDILLMKQHNFNAVRCSH 392 (1027)
T ss_pred CHHHHHHHHHHHHHCCCCEEEecC
Confidence 456789999999999999999963
No 114
>PLN02389 biotin synthase
Probab=24.83 E-value=2.1e+02 Score=31.11 Aligned_cols=63 Identities=19% Similarity=0.199 Sum_probs=44.8
Q ss_pred cHHHHHHHHHcCCCEEEecccccc-cccCCCCCCChhHHHHHHHHHHHHHHCCCeeEEEec--cCCcch
Q 009558 318 YKEDVKLMAKTGLDAYRFSISWSR-LIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH--HSDLPQ 383 (532)
Q Consensus 318 YkEDI~Lm~elGv~ayRFSIsWsR-I~P~G~G~vN~~Gi~~Y~~lId~L~~~GIePiVTL~--HfdlP~ 383 (532)
-+|.++.|++.|++.|-.+++=++ ++|.-.. ...++.+-+.++.+++.||+...++. |.+.+.
T Consensus 177 ~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~---~~s~e~rl~ti~~a~~~Gi~v~sg~IiGlgEt~e 242 (379)
T PLN02389 177 EKEQAAQLKEAGLTAYNHNLDTSREYYPNVIT---TRSYDDRLETLEAVREAGISVCSGGIIGLGEAEE 242 (379)
T ss_pred CHHHHHHHHHcCCCEEEeeecCChHHhCCcCC---CCCHHHHHHHHHHHHHcCCeEeEEEEECCCCCHH
Confidence 479999999999999999886222 4444211 12477788999999999999866532 344443
No 115
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=24.56 E-value=91 Score=33.00 Aligned_cols=62 Identities=16% Similarity=0.147 Sum_probs=40.5
Q ss_pred HHHHHHHHHcCCCEEEecc-ccc-ccccCCCCCCChhHHHHHHHHHHHHHHCCCeeEEEeccCCcch
Q 009558 319 KEDVKLMAKTGLDAYRFSI-SWS-RLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHSDLPQ 383 (532)
Q Consensus 319 kEDI~Lm~elGv~ayRFSI-sWs-RI~P~G~G~vN~~Gi~~Y~~lId~L~~~GIePiVTL~HfdlP~ 383 (532)
++.++.|+++|++...+++ +-. +++.. -|.. ...+-+.+.|+.+++.|+.++-.-+-+.+|.
T Consensus 100 ~e~l~~l~~~Gv~risiGvqS~~~~~l~~-lgR~--~~~~~~~~ai~~l~~~G~~~v~~dli~GlPg 163 (360)
T TIGR00539 100 AEWCKGLKGAGINRLSLGVQSFRDDKLLF-LGRQ--HSAKNIAPAIETALKSGIENISLDLMYGLPL 163 (360)
T ss_pred HHHHHHHHHcCCCEEEEecccCChHHHHH-hCCC--CCHHHHHHHHHHHHHcCCCeEEEeccCCCCC
Confidence 6889999999999666666 221 22211 1211 1255677889999999998765544566664
No 116
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=24.00 E-value=1.3e+02 Score=30.83 Aligned_cols=23 Identities=9% Similarity=0.287 Sum_probs=18.2
Q ss_pred ccccccHHHHHHHHHcCCCEEEe
Q 009558 313 DEYHKYKEDVKLMAKTGLDAYRF 335 (532)
Q Consensus 313 D~YhrYkEDI~Lm~elGv~ayRF 335 (532)
+---.-+.=|+|+++||.++..|
T Consensus 132 ~~iV~vetAiaml~dmG~~SiKf 154 (236)
T TIGR03581 132 EAIVPIETAIAMLKDMGGSSVKF 154 (236)
T ss_pred CceeeHHHHHHHHHHcCCCeeeE
Confidence 33445677899999999999976
No 117
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=23.74 E-value=1.1e+02 Score=30.75 Aligned_cols=59 Identities=22% Similarity=0.210 Sum_probs=46.1
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCC-CCCCChhHHHHHHHHHHHHHHCCCeeEEEec
Q 009558 319 KEDVKLMAKTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLH 377 (532)
Q Consensus 319 kEDI~Lm~elGv~ayRFSIsWsRI~P~G-~G~vN~~Gi~~Y~~lId~L~~~GIePiVTL~ 377 (532)
.+|++.+.+.|++..|+.++.+-+.-.. -+.=-+++++-..++++.++++|+++.+++-
T Consensus 72 ~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~ 131 (259)
T cd07939 72 KEDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAE 131 (259)
T ss_pred HHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeec
Confidence 7899999999999999999887663221 1222356788899999999999998876653
No 118
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=22.46 E-value=1.4e+02 Score=30.55 Aligned_cols=64 Identities=16% Similarity=0.206 Sum_probs=47.3
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCC-CCCCChhHHHHHHHHHHHHHHCCCeeEEEecc-CCcc
Q 009558 319 KEDVKLMAKTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLHH-SDLP 382 (532)
Q Consensus 319 kEDI~Lm~elGv~ayRFSIsWsRI~P~G-~G~vN~~Gi~~Y~~lId~L~~~GIePiVTL~H-fdlP 382 (532)
.+|++.+.+.|++..|+.++=|...-.. .+.=-++.++-..+++...+++|+++.+++-. |..|
T Consensus 74 ~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~ 139 (262)
T cd07948 74 MDDARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSD 139 (262)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCC
Confidence 6799999999999999988544332221 12112577999999999999999999998853 4344
No 119
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=22.32 E-value=3.6e+02 Score=24.94 Aligned_cols=59 Identities=12% Similarity=0.155 Sum_probs=39.2
Q ss_pred HHHHHHHHcCCCEEEeccc----ccccccCCCC--CCChhHHHHHHHHHHHHHHCCCeeEEEecc-CC
Q 009558 320 EDVKLMAKTGLDAYRFSIS----WSRLIPNGRG--PVNPKGLQYYNNLINELISYGIQPHVTLHH-SD 380 (532)
Q Consensus 320 EDI~Lm~elGv~ayRFSIs----WsRI~P~G~G--~vN~~Gi~~Y~~lId~L~~~GIePiVTL~H-fd 380 (532)
+=++.++++|+|+.-+... |+ -.|...+ ....+ -+...++|++++++||++++=+-+ ||
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~a-yYPt~~~~~hp~L~-~Dllge~v~a~h~~Girv~ay~~~~~d 69 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYA-YYPTKVGPRHPGLK-RDLLGEQVEACHERGIRVPAYFDFSWD 69 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEE-EccCCCCcCCCCCC-cCHHHHHHHHHHHCCCEEEEEEeeecC
Confidence 3468899999999988332 21 1233212 22333 588999999999999999874322 55
No 120
>PRK00811 spermidine synthase; Provisional
Probab=21.97 E-value=1.1e+02 Score=31.40 Aligned_cols=115 Identities=20% Similarity=0.254 Sum_probs=62.3
Q ss_pred cchHhhHhhhhHHHHHhhcccceeeeecCCchhHhHhhhccc-cccccccccccccchhhhhHHHHH---hce-------
Q 009558 72 SCTLEVQRALPVLKKAYGDSMLKVLHVGPETCSVVSKLLKEE-DTEAWGVEPYDLDDADANCRSLVR---KGI------- 140 (532)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~------- 140 (532)
..--|.+..+|.+.. ..-++||.+|-.+..+...+|+.. ..+.-+||.-. ++-..||.... .|.
T Consensus 60 ~~Y~e~l~h~~~~~~---~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~--~vv~~a~~~~~~~~~~~~~d~rv~ 134 (283)
T PRK00811 60 FIYHEMMTHVPLFAH---PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDE--RVVEVCRKYLPEIAGGAYDDPRVE 134 (283)
T ss_pred hhHHHHhhhHHHhhC---CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCH--HHHHHHHHHhHHhccccccCCceE
Confidence 334455666676632 346799999999999999999862 33444444321 12233443221 122
Q ss_pred eeeeeccCCCCCCCCceeEEEEcccccccChh-hh-cc-cccc-ccccccccEEEE
Q 009558 141 VRVADIKFPLPYRAKSFSLVIVSDAVDYLSPK-YL-NR-TLPE-LARVSVDGVVIF 192 (532)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~-~~~~-~~~~~~~~~~~~ 192 (532)
+.++|..--++-..++|.+||+ |+-|-..|- -| .+ -+-. ..++..+|+++.
T Consensus 135 v~~~Da~~~l~~~~~~yDvIi~-D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~ 189 (283)
T PRK00811 135 LVIGDGIKFVAETENSFDVIIV-DSTDPVGPAEGLFTKEFYENCKRALKEDGIFVA 189 (283)
T ss_pred EEECchHHHHhhCCCcccEEEE-CCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 4557754434445678998875 654432221 11 00 0111 245667888775
No 121
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=21.19 E-value=1.3e+02 Score=34.14 Aligned_cols=120 Identities=22% Similarity=0.385 Sum_probs=88.2
Q ss_pred hhHhhhhHHHHHhhcccceeeeecCCchhHhHhhhccccccccccccccccchhhhhHHHHHhceeeeeec--cCCCCCC
Q 009558 76 EVQRALPVLKKAYGDSMLKVLHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDADANCRSLVRKGIVRVADI--KFPLPYR 153 (532)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 153 (532)
.+.+.||.. .-|.+.+-+|-||=.+-|.-+.||+ -+.-+-.+.|+|-. .+.++--.++||.-+--+ ..-|||=
T Consensus 104 ~i~~~~~~~--~~~g~iR~~LDvGcG~aSF~a~l~~-r~V~t~s~a~~d~~--~~qvqfaleRGvpa~~~~~~s~rLPfp 178 (506)
T PF03141_consen 104 QIAEMIPLI--KWGGGIRTALDVGCGVASFGAYLLE-RNVTTMSFAPNDEH--EAQVQFALERGVPAMIGVLGSQRLPFP 178 (506)
T ss_pred HHHHHhhcc--ccCCceEEEEeccceeehhHHHHhh-CCceEEEcccccCC--chhhhhhhhcCcchhhhhhccccccCC
Confidence 455666665 6788999999999999999999984 45557777887544 344555557887554333 5678999
Q ss_pred CCceeEEEEcccccccChhhhccccccccccc-cccEEEEecCCCccch
Q 009558 154 AKSFSLVIVSDAVDYLSPKYLNRTLPELARVS-VDGVVIFAGYPGQHRA 201 (532)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 201 (532)
+.+|.+|=.|..+.-=.+.- -.-|-|+.||= .-|..+++|-|-++|.
T Consensus 179 ~~~fDmvHcsrc~i~W~~~~-g~~l~evdRvLRpGGyfv~S~ppv~~r~ 226 (506)
T PF03141_consen 179 SNAFDMVHCSRCLIPWHPND-GFLLFEVDRVLRPGGYFVLSGPPVYQRT 226 (506)
T ss_pred ccchhhhhcccccccchhcc-cceeehhhhhhccCceEEecCCcccccc
Confidence 99999999998775433322 35788999985 5789999999988654
No 122
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=21.17 E-value=60 Score=34.27 Aligned_cols=33 Identities=42% Similarity=0.543 Sum_probs=21.1
Q ss_pred CCCCCCcccccccccCCCCCCchhHHHHHHHHHh
Q 009558 12 LADGGSIPFVGSAHSKSRSSPLLSVILLAVGAVL 45 (532)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (532)
.|+.|.+ -..+-.|||-|+.|++|.|+|-+.+|
T Consensus 257 LGe~Gl~-~~SSnss~S~s~~l~piil~IG~vl~ 289 (305)
T PF04639_consen 257 LGENGLI-TKSSNSSKSVSDSLLPIILIIGGVLL 289 (305)
T ss_pred cCccccc-ccccCccchhhhhhhHHHHHHHHHHH
Confidence 4566633 33455678888899998776644443
No 123
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=21.08 E-value=1.6e+02 Score=32.54 Aligned_cols=67 Identities=21% Similarity=0.256 Sum_probs=45.1
Q ss_pred ccccccHHHHHHHHHcCCCEEEecccccc--------cccCCC---------CCCChh--HHHHHHHHHHHHHHCCCeeE
Q 009558 313 DEYHKYKEDVKLMAKTGLDAYRFSISWSR--------LIPNGR---------GPVNPK--GLQYYNNLINELISYGIQPH 373 (532)
Q Consensus 313 D~YhrYkEDI~Lm~elGv~ayRFSIsWsR--------I~P~G~---------G~vN~~--Gi~~Y~~lId~L~~~GIePi 373 (532)
+.|..-.+-++-+++||+++.=++=.+.- -.|.-- |.||+. ..+=+++||+++.++||+.|
T Consensus 19 ~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi 98 (479)
T PRK09441 19 KLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVY 98 (479)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEE
Confidence 44555677789999999999977653332 222100 123322 35568999999999999999
Q ss_pred EE--eccC
Q 009558 374 VT--LHHS 379 (532)
Q Consensus 374 VT--L~Hf 379 (532)
+. +.|-
T Consensus 99 ~D~V~NH~ 106 (479)
T PRK09441 99 ADVVLNHK 106 (479)
T ss_pred EEECcccc
Confidence 87 5674
No 124
>PLN02692 alpha-galactosidase
Probab=21.03 E-value=3.4e+02 Score=30.15 Aligned_cols=59 Identities=19% Similarity=0.215 Sum_probs=43.6
Q ss_pred ccccHHHHHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHCCCeeEEEeccCCcc
Q 009558 315 YHKYKEDVKLMAKTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHSDLP 382 (532)
Q Consensus 315 YhrYkEDI~Lm~elGv~ayRFSIsWsRI~P~G~G~vN~~Gi~~Y~~lId~L~~~GIePiVTL~HfdlP 382 (532)
+..|+.|.+.+++-|++....--. - .. + ....+-|..+-++|.+.|-..+..|+.|..+
T Consensus 156 ~g~e~~DA~~fA~WGvDylK~D~C--~--~~--~---~~~~~~y~~m~~AL~~tGRpI~~SlC~wg~~ 214 (412)
T PLN02692 156 LGHEEQDAKTFASWGIDYLKYDNC--N--ND--G---SKPTVRYPVMTRALMKAGRPIFFSLCEWGDM 214 (412)
T ss_pred hHHHHHHHHHHHhcCCCEEecccc--C--CC--C---cchhHHHHHHHHHHHHhCCCeEEEecCCCcC
Confidence 678899999999999998876221 1 01 1 1234679999999999997656678888653
No 125
>PLN02823 spermine synthase
Probab=20.82 E-value=1.6e+02 Score=31.53 Aligned_cols=41 Identities=15% Similarity=0.050 Sum_probs=29.4
Q ss_pred cccchHhhHhhhhHHHHHhhcccceeeeecCCchhHhHhhhccc
Q 009558 70 VVSCTLEVQRALPVLKKAYGDSMLKVLHVGPETCSVVSKLLKEE 113 (532)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (532)
+..+--|.+-.+|.+. -..-++||++|=..+.++..+|+..
T Consensus 85 de~~YhE~l~h~~l~~---~~~pk~VLiiGgG~G~~~re~l~~~ 125 (336)
T PLN02823 85 DEFVYHESLVHPALLH---HPNPKTVFIMGGGEGSTAREVLRHK 125 (336)
T ss_pred hHHHHHHHHHhHHHhh---CCCCCEEEEECCCchHHHHHHHhCC
Confidence 4445556555556653 2356899999999999999999853
No 126
>PF03511 Fanconi_A: Fanconi anaemia group A protein; InterPro: IPR003516 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy []. Four complementation groups have been identified, designated A to D. The FA group A gene (FAA) has been cloned [], but its function remains to be elucidated.
Probab=20.18 E-value=79 Score=26.28 Aligned_cols=41 Identities=22% Similarity=0.247 Sum_probs=33.6
Q ss_pred cccccCCCCCCChhHHHHHHHHHHHHHHCCCeeEEEeccCCcc
Q 009558 340 SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHSDLP 382 (532)
Q Consensus 340 sRI~P~G~G~vN~~Gi~~Y~~lId~L~~~GIePiVTL~HfdlP 382 (532)
+++.|+ .+.=.+++++...+++..|-++|| |++.|++-+-+
T Consensus 19 s~l~p~-~~~d~~kaldiCaeIL~cLE~R~i-sWl~LFqltE~ 59 (64)
T PF03511_consen 19 SYLAPK-EGADSLKALDICAEILGCLEKRKI-SWLVLFQLTET 59 (64)
T ss_pred HhcCcc-cccccHHHHHHHHHHHHHHHhCCC-cHHHhhhcccc
Confidence 577888 455567899999999999999999 89888876543
No 127
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=20.13 E-value=1.8e+02 Score=28.78 Aligned_cols=68 Identities=28% Similarity=0.348 Sum_probs=41.3
Q ss_pred ceeeeecCCchhHhHhhhccc-ccccccccccc--ccchhhhhHHHH-HhceeeeeeccCCCCCCCCceeEEEE
Q 009558 93 LKVLHVGPETCSVVSKLLKEE-DTEAWGVEPYD--LDDADANCRSLV-RKGIVRVADIKFPLPYRAKSFSLVIV 162 (532)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (532)
.+||.+|..+..+...|.+.- ..+..|+|..+ ++-+..|++... ..--+..+|+.-+++ ..+|.+||+
T Consensus 110 ~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~--~~~fD~Iv~ 181 (275)
T PRK09328 110 LRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP--GGRFDLIVS 181 (275)
T ss_pred CEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC--CCceeEEEE
Confidence 479999999987766666553 46777877542 233444443111 122345567654554 578999876
Done!