BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009559
(532 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HIG|A Chain A, Crystal Structure Of Phosphofructokinase Apoenzyme From
Trypanosoma Brucei.
pdb|2HIG|B Chain B, Crystal Structure Of Phosphofructokinase Apoenzyme From
Trypanosoma Brucei.
pdb|3F5M|A Chain A, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
pdb|3F5M|B Chain B, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
pdb|3F5M|C Chain C, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
pdb|3F5M|D Chain D, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
Length = 487
Score = 279 bits (714), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 158/365 (43%), Positives = 217/365 (59%), Gaps = 8/365 (2%)
Query: 162 AGPREEIYFKPEEVKAAIVTCGGLCPGLNDVIRHIVIT-LEIYGVKNIVGIPFGYRGFCD 220
A R I+F P E IVTCGG+CPGLNDVIR I +T + +Y VK ++G FGY G
Sbjct: 85 AAARSRIHFNPTETTIGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSK 144
Query: 221 K-ELTEMPLSRKVVQNIHXXXXXXXXXXRGAPTVSEIVDSMEERGINMLFVLGGNGTHAG 279
K T + L R V NIH RG E+VD++E G+N+LF +GG+GT G
Sbjct: 145 KGSQTAIELHRGRVTNIHHYGGTILGSSRGPQDPKEMVDTLERLGVNILFTVGGDGTQRG 204
Query: 280 ANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAHSAYH 339
A I E ++R + ++V GVPKTIDND+ +TFGF TAVE+A +AI +AY EA SA +
Sbjct: 205 ALVISQEAKRRGVDISVFGVPKTIDNDLSFSHRTFGFQTAVEKAVQAIRAAYAEAVSANY 264
Query: 340 GIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIETKGSAVV 399
G+G+VKLMGR SG+IA A++AS Q +ICL+PE+P + V+ L+ S V+
Sbjct: 265 GVGVVKLMGRDSGFIAAQAAVASAQANICLVPENPIS---EQEVMSLLERRFCHSRSCVI 321
Query: 400 CVAEGAGQSLIKKTNATDASGNIVLGDVGVLIQQETKKYFKEIGVPI---DVKYIDPTYM 456
VAEG GQ + + DASGN L D+GV++ ++ K + K VKYIDP+YM
Sbjct: 322 IVAEGFGQDWGRGSGGYDASGNKKLIDIGVILTEKVKAFLKANKSRYPDSTVKYIDPSYM 381
Query: 457 IRACRANASDGILCTVLGQNAVHGAFAGFSGITVGLCNTHYAYFPIPEVISYPRAVDPNS 516
IRAC +A+D + C L AVH A AG +G + + + +Y PI S R +D
Sbjct: 382 IRACPPSANDALFCATLATLAVHEAMAGATGCIIAMRHNNYILVPIKVATSVRRVLDLRG 441
Query: 517 RMWHR 521
++W +
Sbjct: 442 QLWRQ 446
>pdb|1ZXX|A Chain A, The Crystal Structure Of Phosphofructokinase From
Lactobacillus Delbrueckii
Length = 319
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 95/326 (29%), Positives = 148/326 (45%), Gaps = 47/326 (14%)
Query: 176 KAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQN 235
+ I+T GG PG+N +R + G++ + GI +G+ G ++ PL + V +
Sbjct: 3 RIGILTSGGDAPGMNAAVRAVTRVAIANGLE-VFGIRYGFAGLVAGDI--FPLESEDVAH 59
Query: 236 IHXXXXXXXXXXRGAPTVSEI------VDSMEERGINMLFVLGGNGTHAGANAIHNECRK 289
+ R P +E ++ +++ GI+ + V+GG+G++ GA +
Sbjct: 60 LINVSGTFLYSAR-YPEFAEEEGQLAGIEQLKKHGIDAVVVIGGDGSYHGA------LQL 112
Query: 290 RRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAHSAYHGIGIVKLMGR 349
R +G+P TIDNDI D T G+DTA A AI+ A S++H + IV +MGR
Sbjct: 113 TRHGFNSIGLPGTIDNDIPYTDATIGYDTACMTAMDAIDKIRDTA-SSHHRVFIVNVMGR 171
Query: 350 SSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIET-KGSAVVCVAEGAGQS 408
+ G IAM +A G D +IPE P+++ + LK E+ K +V VAEG
Sbjct: 172 NCGDIAMRVGVACGA-DAIVIPERPYDV---EEIANRLKQAQESGKDHGLVVVAEG---- 223
Query: 409 LIKKTNATDASGNIVLGDVGVLIQQETKKYFKEIGVPIDVKYIDPTYMIRACRANASDGI 468
++ D E KKY DV+ +M R SD +
Sbjct: 224 -------------VMTAD---QFMAELKKYGD-----FDVRANVLGHMQRGGTPTVSDRV 262
Query: 469 LCTVLGQNAVHGAFAGFSGITVGLCN 494
L + LG AVH G G+ VG+ N
Sbjct: 263 LASKLGSEAVHLLLEGKGGLAVGIEN 288
>pdb|1MTO|A Chain A, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|B Chain B, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|C Chain C, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|D Chain D, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|E Chain E, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|F Chain F, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|G Chain G, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|H Chain H, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
Length = 319
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 94/349 (26%), Positives = 154/349 (44%), Gaps = 45/349 (12%)
Query: 176 KAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQN 235
+ ++T GG PG+N IR +V +GV+ + G+ GY G + ++ + V
Sbjct: 3 RIGVLTSGGDSPGMNAAIRSVVRKAIYHGVE-VYGVYHGYAGLIAGNIKKLEVG-DVGDI 60
Query: 236 IHXXXXXXXXXX----RGAPTVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRR 291
IH + + ++ +++ GI L V+GG+G++ GA +
Sbjct: 61 IHRGGTILYTARCPEFKTEEGQKKGIEQLKKHGIEGLVVIGGDGSYQGAKKLTEHG---- 116
Query: 292 MKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAHSAYHGIGIVKLMGRSS 351
VGVP TIDNDI D T GFDTA+ AI+ A +++ ++++MGR +
Sbjct: 117 --FPCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKIRDTA-TSHERTWVIEVMGRHA 173
Query: 352 GYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIET-KGSAVVCVAEGAGQSLI 410
G IA+++ LA G + LIPE+ +++ N V+ LK E K +++ VAEG G +
Sbjct: 174 GDIALYSGLAGGA-ETILIPEADYDM---NDVIARLKRGHERGKKHSIIIVAEGVGSGV- 228
Query: 411 KKTNATDASGNIVLGDVGVLIQQETKKYFKEIGVPIDVKYIDPTYMIRACRANASDGILC 470
D G IQ+ T + + ++ R A D +L
Sbjct: 229 ---------------DFGRQIQEAT---------GFETRVTVLGHVQRGGSPTAFDRVLA 264
Query: 471 TVLGQNAVHGAFAGFSGITVGLCNTHYAYFPIPEVISYPRAVDPNSRMW 519
+ LG AV G G VG+ N I E ++ +D RM+
Sbjct: 265 SRLGARAVELLLEGKGGRCVGIQNNQLVDHDIAEALANKHTID--QRMY 311
>pdb|3PFK|A Chain A, Phosphofructokinase. Structure And Control
pdb|4PFK|A Chain A, Phosphofructokinase. Structure And Control
Length = 319
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 94/349 (26%), Positives = 153/349 (43%), Gaps = 45/349 (12%)
Query: 176 KAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQN 235
+ ++T GG PG+N IR +V +GV+ + G+ GY G + ++ + V
Sbjct: 3 RIGVLTSGGDSPGMNAAIRSVVRKAIYHGVE-VYGVYHGYAGLIAGNIKKLEVG-DVGDI 60
Query: 236 IHXXXXXXXXXX----RGAPTVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRR 291
IH + + ++ +++ GI L V+GG+G++ GA +
Sbjct: 61 IHRGGTILYTARCPEFKTEEGQKKGIEQLKKHGIQGLVVIGGDGSYQGAKKLTEHG---- 116
Query: 292 MKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAHSAYHGIGIVKLMGRSS 351
VGVP TIDNDI D T GFDTA+ AI+ A +++ ++++MGR +
Sbjct: 117 --FPCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKIRDTA-TSHERTYVIEVMGRHA 173
Query: 352 GYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIET-KGSAVVCVAEGAGQSLI 410
G IA+ + LA G + LIPE+ +++ N V+ LK E K +++ VAEG G +
Sbjct: 174 GDIALWSGLAGGA-ETILIPEADYDM---NDVIARLKRGHERGKKHSIIIVAEGVGSGV- 228
Query: 411 KKTNATDASGNIVLGDVGVLIQQETKKYFKEIGVPIDVKYIDPTYMIRACRANASDGILC 470
D G IQ+ T + + ++ R A D +L
Sbjct: 229 ---------------DFGRQIQEAT---------GFETRVTVLGHVQRGGSPTAFDRVLA 264
Query: 471 TVLGQNAVHGAFAGFSGITVGLCNTHYAYFPIPEVISYPRAVDPNSRMW 519
+ LG AV G G VG+ N I E ++ +D RM+
Sbjct: 265 SRLGARAVELLLEGKGGRCVGIQNNQLVDHDIAEALANKHTID--QRMY 311
>pdb|6PFK|A Chain A, Phosphofructokinase, Inhibited T-State
pdb|6PFK|B Chain B, Phosphofructokinase, Inhibited T-State
pdb|6PFK|C Chain C, Phosphofructokinase, Inhibited T-State
pdb|6PFK|D Chain D, Phosphofructokinase, Inhibited T-State
pdb|3U39|A Chain A, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
pdb|3U39|B Chain B, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
pdb|3U39|C Chain C, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
pdb|3U39|D Chain D, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
Length = 319
Score = 92.0 bits (227), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 94/349 (26%), Positives = 153/349 (43%), Gaps = 45/349 (12%)
Query: 176 KAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQN 235
+ ++T GG PG+N IR +V +GV+ + G+ GY G + ++ + V
Sbjct: 3 RIGVLTSGGDSPGMNAAIRSVVRKAIYHGVE-VYGVYHGYAGLIAGNIKKLEVG-DVGDI 60
Query: 236 IHXXXXXXXXXX----RGAPTVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRR 291
IH + + ++ +++ GI L V+GG+G++ GA +
Sbjct: 61 IHRGGTILYTARCPEFKTEEGQKKGIEQLKKHGIEGLVVIGGDGSYQGAKKLTEHG---- 116
Query: 292 MKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAHSAYHGIGIVKLMGRSS 351
VGVP TIDNDI D T GFDTA+ AI+ A +++ ++++MGR +
Sbjct: 117 --FPCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKIRDTA-TSHERTYVIEVMGRHA 173
Query: 352 GYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIET-KGSAVVCVAEGAGQSLI 410
G IA+ + LA G + LIPE+ +++ N V+ LK E K +++ VAEG G +
Sbjct: 174 GDIALWSGLAGGA-ETILIPEADYDM---NDVIARLKRGHERGKKHSIIIVAEGVGSGV- 228
Query: 411 KKTNATDASGNIVLGDVGVLIQQETKKYFKEIGVPIDVKYIDPTYMIRACRANASDGILC 470
D G IQ+ T + + ++ R A D +L
Sbjct: 229 ---------------DFGRQIQEAT---------GFETRVTVLGHVQRGGSPTAFDRVLA 264
Query: 471 TVLGQNAVHGAFAGFSGITVGLCNTHYAYFPIPEVISYPRAVDPNSRMW 519
+ LG AV G G VG+ N I E ++ +D RM+
Sbjct: 265 SRLGARAVELLLEGKGGRCVGIQNNQLVDHDIAEALANKHTID--QRMY 311
>pdb|4A3S|A Chain A, Crystal Structure Of Pfk From Bacillus Subtilis
pdb|4A3S|B Chain B, Crystal Structure Of Pfk From Bacillus Subtilis
Length = 319
Score = 92.0 bits (227), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 95/354 (26%), Positives = 157/354 (44%), Gaps = 43/354 (12%)
Query: 176 KAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQN 235
+ ++T GG PG+N +R V+ IY + GI GY G ++ ++ L V
Sbjct: 3 RIGVLTSGGDSPGMNAAVR-AVVRKAIYHDVEVYGIYNGYAGLISGKIEKLELG-SVGDI 60
Query: 236 IHXXXXXXXXXX----RGAPTVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRR 291
IH + + + ++++ GI L V+GG+G++ GA +
Sbjct: 61 IHRGGTKLYTARCPEFKTVEGREKGIANLKKLGIEGLVVIGGDGSYMGAKKLTEHG---- 116
Query: 292 MKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAHSAYHGIGIVKLMGRSS 351
VGVP TIDNDI D T GFDTA+ AI+ A +++ ++++MGR +
Sbjct: 117 --FPCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKIRDTA-TSHERTYVIEVMGRHA 173
Query: 352 GYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIET-KGSAVVCVAEGAGQSLI 410
G IA+ A LA G I LIPE+ +++H ++ LK E K +++ VAEG G +
Sbjct: 174 GDIALWAGLAGGAESI-LIPEADYDMH---EIIARLKRGHERGKKHSIIIVAEGVGSGV- 228
Query: 411 KKTNATDASGNIVLGDVGVLIQQETKKYFKEIGVPIDVKYIDPTYMIRACRANASDGILC 470
+ G I++ET ++ + ++ R +A+D +L
Sbjct: 229 ---------------EFGKRIEEETN---------LETRVSVLGHIQRGGSPSAADRVLA 264
Query: 471 TVLGQNAVHGAFAGFSGITVGLCNTHYAYFPIPEVISYPRAVDPNSRMWHRCLT 524
+ LG AV G G VG+ N I E++ V+ N + L+
Sbjct: 265 SRLGAYAVELLLEGKGGRCVGIQNNKLVDHDIIEILETKHTVEQNMYQLSKELS 318
>pdb|1PFK|A Chain A, Crystal Structure Of The Complex Of Phosphofructokinase
From Escherichia Coli With Its Reaction Products
pdb|1PFK|B Chain B, Crystal Structure Of The Complex Of Phosphofructokinase
From Escherichia Coli With Its Reaction Products
pdb|2PFK|A Chain A, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
pdb|2PFK|B Chain B, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
pdb|2PFK|C Chain C, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
pdb|2PFK|D Chain D, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
Length = 320
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 88/353 (24%), Positives = 152/353 (43%), Gaps = 47/353 (13%)
Query: 176 KAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQN 235
K ++T GG PG+N IR +V + G++ ++GI GY G + + + L R V +
Sbjct: 4 KIGVLTSGGDAPGMNAAIRGVVRSALTEGLE-VMGIYDGYLGLYEDRMVQ--LDRYSVSD 60
Query: 236 IHXXXXXXXXXXRGAPTVSE-----IVDSMEERGINMLFVLGGNGTHAGANAIHNECRKR 290
+ R E ++++++RGI+ L V+GG+G++ GA R
Sbjct: 61 MINRGGTFLGSARFPEFRDENIRAVAIENLKKRGIDALVVIGGDGSYMGA------MRLT 114
Query: 291 RMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAHSAYHGIGIVKLMGRS 350
M +G+P TIDNDI D T GF TA+ AI+ + S++ I +V++MGR
Sbjct: 115 EMGFPCIGLPGTIDNDIKGTDYTIGFFTALSTVVEAIDRLR-DTSSSHQRISVVEVMGRY 173
Query: 351 SGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLI-ETKGSAVVCVAEGAGQSL 409
G + + A++A G + ++PE F+ ++ +K I + K A+V + E
Sbjct: 174 CGDLTLAAAIAGG-CEFVVVPEVEFS---REDLVNEIKAGIAKGKKHAIVAITE------ 223
Query: 410 IKKTNATDASGNIVLGDVGVLIQQETKKYFKEIGVPIDVKYIDPTYMIRACRANASDGIL 469
D + + + G + + + G P+ D IL
Sbjct: 224 --HMCDVDELAHFIEKETGRETRATVLGHIQRGGSPV-----------------PYDRIL 264
Query: 470 CTVLGQNAVHGAFAGFSGITVGLCNTHYAYFPIPEVISYPRAVDPNSRMWHRC 522
+ +G A+ AG+ G VG+ N + I + I + P W C
Sbjct: 265 ASRMGAYAIDLLLAGYGGRCVGIQNEQLVHHDIIDAIENMKR--PFKGDWLDC 315
>pdb|3OPY|A Chain A, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|C Chain C, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|E Chain E, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|G Chain G, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
Length = 989
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 86/375 (22%), Positives = 147/375 (39%), Gaps = 51/375 (13%)
Query: 166 EEIYFKPEEVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTE 225
E++ + + K AI+T GG PG+N +R + YG K + GY G
Sbjct: 202 EQVKSEEGKKKIAIITSGGDAPGMNAAVRAVTRAGIFYGCK-VYACYEGYTGLVKGGDML 260
Query: 226 MPLSRKVVQNIHXXXXXXXXXXRGAPTVS-----EIVDSMEERGINMLFVLGGNGTHAGA 280
L + V+ + R + +M GI+ L V GG+G+ GA
Sbjct: 261 KELQWQDVRGLLSIGGTIIGTARCKEFRERWGRLQACYNMVSNGIDALVVCGGDGSLTGA 320
Query: 281 N-----------------AIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEA 323
+ I E + + +VG+ +IDND+ D T G +++E
Sbjct: 321 DLFRKEWPELIKELLGEDKITKEQYETHRNLTIVGLVGSIDNDMCGTDSTIGAYSSLERI 380
Query: 324 QRAINSAYIEAHSAYHGIG-IVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNG 382
++ YI+A +A H +V++MGR G++ + + +A+G D IPE P +
Sbjct: 381 IELVD--YIDATAASHSRAFVVEVMGRHCGWLGLMSGIATGA-DYIFIPERPPSESNWKD 437
Query: 383 VLRH--LKYLIETKGSAVVCVAEGAGQSLIKKTNATDASGNIVLGDVGVLIQQETKKYFK 440
L+ L++ + + V VAEGA + + + +E K
Sbjct: 438 DLKKVCLRHREKGRRKTTVIVAEGA-----------------IDDQLNPITSEEVKDVLV 480
Query: 441 EIGVPIDVKYIDPTYMIRACRANASDGILCTVLGQNAVHGAFAGFSGI---TVGLCNTHY 497
EIG +D + ++ R A D L TV G +AV I + +
Sbjct: 481 EIG--LDTRITRLGHVQRGGAPCAFDRFLATVQGVDAVRAVLESTPAIPSPVISILENKI 538
Query: 498 AYFPIPEVISYPRAV 512
P+ E ++ + V
Sbjct: 539 VRQPLVESVAQTKTV 553
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 299 VPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAHSAYHGIGIVKLMGRSSGYIAMHA 358
+P T+ N++ + + G DT + ++ A ++ +V++ G SGY+A +A
Sbjct: 724 LPATVSNNVPGTEYSLGSDTCLNTLSGYCDAVKQSASASRRRTFVVEVQGGYSGYLASYA 783
Query: 359 SLASGQIDICLIPESPFNLH 378
L +G + + PE+P NL
Sbjct: 784 GLITGALAV-YTPENPINLQ 802
>pdb|3O8L|A Chain A, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
pdb|3O8L|B Chain B, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
pdb|3O8N|A Chain A, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
pdb|3O8N|B Chain B, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
Length = 762
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 111/252 (44%), Gaps = 28/252 (11%)
Query: 178 AIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCD-----KELTEMPLSRKV 232
A++T GG G+N +R V+ + I+ + + GY+G D +E T +S +
Sbjct: 19 AVLTSGGDAQGMNAAVR-AVVRVGIFTGARVFFVHEGYQGLVDGGDHIREATWESVSMML 77
Query: 233 VQNIHXXXXXXXXXXRGAPTVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECR---- 288
R ++ +RGI L V+GG+G+ GA+ +E
Sbjct: 78 QLGGTVIGSARCKDFREREGRLRAAHNLVKRGITNLCVIGGDGSLTGADTFRSEWSDLLS 137
Query: 289 -------------KRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAH 335
R + +VG+ +IDND D T G D+A+ +++ A
Sbjct: 138 DLQKAGKITAEEATRSSYLNIVGLVGSIDNDFCGTDMTIGTDSALHRITEIVDAITTTAQ 197
Query: 336 SAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIETKG 395
S + ++++MGR GY+A+ SL+ G D IPE P + + + + R L T+G
Sbjct: 198 S-HQRTFVLEVMGRHCGYLALVTSLSCGA-DWVFIPECPPDDNWEDHLCRRLSE-TRTRG 254
Query: 396 SA--VVCVAEGA 405
S ++ VAEGA
Sbjct: 255 SRLNIIIVAEGA 266
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 90/220 (40%), Gaps = 9/220 (4%)
Query: 178 AIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIH 237
A++ G G+N +R V I G + +V + G+ G ++ E S V
Sbjct: 404 AVMNVGAPAAGMNAAVRSTVRIGLIQGNRVLV-VHDGFEGPAKGQIEEAGWS--YVGGWT 460
Query: 238 XXXXXXXXXXRGAPTVS--EIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKR--RMK 293
R P S +I ++ + I L ++GG + G + E RK+ +
Sbjct: 461 GQGGSKLGSKRTLPKKSFEQISANITKFNIQGLVIIGGFEAYTGGLELM-EGRKQFDELC 519
Query: 294 VAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAHSAYHGIGIVKLMGRSSGY 353
+ V +P T+ N++ D + G DTA+ + A + I++ MG GY
Sbjct: 520 IPFVVIPATVSNNVPGSDFSVGADTALNTICTTCDRIKQSAAGTKRRVFIIETMGGYCGY 579
Query: 354 IAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIET 393
+A A LA+ D I E PF + + HL ++T
Sbjct: 580 LATMAGLAA-GADAAYIFEEPFTIRDLQANVEHLVQKMKT 618
>pdb|3O8O|B Chain B, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|D Chain D, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|F Chain F, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|H Chain H, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
Length = 766
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 85/334 (25%), Positives = 140/334 (41%), Gaps = 54/334 (16%)
Query: 178 AIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCD------KELTEMPL--- 228
A++T GG PG+N +R IV + G + V + GY G KE +
Sbjct: 7 AVMTSGGDAPGMNSNVRAIVRSAIFKGCRAFV-VMEGYEGLVRGGPEYIKEFHWEDVRGW 65
Query: 229 SRKVVQNIHXXXXXXXXXXRGAPTVSEIVDSMEERGINMLFVLGGNGTHAGA-------- 280
S + NI G ++ + E G++ L V GG+G+ GA
Sbjct: 66 SAEGGTNIGTARCMEFKKREGRLLGAQ---HLIEAGVDALIVCGGDGSLTGADLFRSEWP 122
Query: 281 ---------NAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAY 331
N I NE +R + + G +IDND+ D T G +A++ +AI+ Y
Sbjct: 123 SLIEELLKTNRISNEQYERMKHLNICGTVGSIDNDMSTTDATIGAYSALDRICKAID--Y 180
Query: 332 IEAHSAYHGIG-IVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHL--K 388
+EA + H +V++MGR+ G++A+ A +A+ D IPE P + + K
Sbjct: 181 VEATANSHSRAFVVEVMGRNCGWLALLAGIAT-SADYIFIPEKPATSSEWQDQMCDIVSK 239
Query: 389 YLIETKGSAVVCVAEGAGQSLIKKTNATDASGNIVLGDVGVLIQQETKKYFKEIGVPIDV 448
+ K + +V VAEGA + + + +D VL+ + + +D
Sbjct: 240 HRSRGKRTTIVVVAEGAIAADLTPISPSDVH--------KVLVDR----------LGLDT 281
Query: 449 KYIDPTYMIRACRANASDGILCTVLGQNAVHGAF 482
+ ++ R A A D IL T+ G AV+
Sbjct: 282 RITTLGHVQRGGTAVAYDRILATLQGLEAVNAVL 315
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 73/167 (43%), Gaps = 19/167 (11%)
Query: 268 LFVLGGNGTHAGANAIHNECRKRR----MKVAVVGVPKTIDNDILLMDKTFGFDTAVEEA 323
L ++GG ++H R R ++ +V +P T+ N++ + + G DTA+
Sbjct: 488 LIIVGG---FEAFESLHQLERARESYPAFRIPMVLIPATLSNNVPGTEYSLGSDTALNAL 544
Query: 324 QRAINSAYIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGV 383
+ A S +V G +SGY+A +ASLA G + +PE +L +
Sbjct: 545 MEYCDVVKQSASSTRGRAFVVDCQGGNSGYLATYASLAVGA-QVSYVPEEGISLEQLSED 603
Query: 384 LRHLKYLIETKGSAVVCVAEGA---GQSLIKKTNATDASGNIVLGDV 427
+ +L E AEG G+ ++K TNA+ A L +V
Sbjct: 604 IEYLAQSFEK--------AEGRGRFGKLILKSTNASKALSATKLAEV 642
>pdb|3O8O|A Chain A, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|C Chain C, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|E Chain E, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|G Chain G, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
Length = 787
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 90/366 (24%), Positives = 153/366 (41%), Gaps = 53/366 (14%)
Query: 176 KAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFC--DKELTEMP---LSR 230
K A++T GG PG+N +R +V T +G ++ + GY G K L +M +
Sbjct: 7 KIAVMTSGGDSPGMNAAVRAVVRTGIHFGC-DVFAVYEGYEGLLRGGKYLKKMAWEDVRG 65
Query: 231 KVVQNIHXXXXXXXXXXRGAPTVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNEC--- 287
+ + R + ++ +GI+ L V GG+G+ GA+ +E
Sbjct: 66 WLSEGGTLIGTARSMEFRKREGRRQAAGNLISQGIDALVVCGGDGSLTGADLFRHEWPSL 125
Query: 288 --------RKRRMKVA------VVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIE 333
R + +VA +VG+ +IDND+ D T G +A+E ++ YI+
Sbjct: 126 VDELVAEGRFTKEEVAPYKNLSIVGLVGSIDNDMSGTDSTIGAYSALERICEMVD--YID 183
Query: 334 AHSAYHGIG-IVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIE 392
A + H +V++MGR G++A+ A +A+G D IPE L+ +
Sbjct: 184 ATAKSHSRAFVVEVMGRHCGWLALMAGIATGA-DYIFIPERAVPHGKWQDELKEVCQRHR 242
Query: 393 TKG--SAVVCVAEGAGQSLIKKTNATDASGNIVLGDVGVLIQQETKKYFKEIGVPIDVKY 450
+KG + + VAEGA + A D ++ E+G +D K
Sbjct: 243 SKGRRNNTIIVAEGALDDQLNPVTANDVKDALI-----------------ELG--LDTKV 283
Query: 451 IDPTYMIRACRANASDGILCTVLGQNAVHGAFAGFSGIT----VGLCNTHYAYFPIPEVI 506
++ R A A D L T+ G +AV A F+ T +G+ P+ E +
Sbjct: 284 TILGHVQRGGTAVAHDRWLATLQGVDAVK-AVLEFTPETPSPLIGILENKIIRMPLVESV 342
Query: 507 SYPRAV 512
++V
Sbjct: 343 KLTKSV 348
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 299 VPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAHSAYHGIGIVKLMGRSSGYIAMHA 358
+P T+ N++ + + G DT + + A + + + ++ G SGYIA
Sbjct: 519 IPATVSNNVPGTEYSLGVDTCLNALVNYTDDIKQSASATRRRVFVCEVQGGHSGYIASFT 578
Query: 359 SLASGQIDICLIPESPFNL 377
L +G + + PE +L
Sbjct: 579 GLITGAVSV-YTPEKKIDL 596
>pdb|3OPY|B Chain B, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|D Chain D, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|F Chain F, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|H Chain H, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
Length = 941
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 113/276 (40%), Gaps = 30/276 (10%)
Query: 156 EQWVHRAGPREEIYFKPEEVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGY 215
E+ +RA E P ++T GG PG+N +R +V IY + I GY
Sbjct: 163 EEKAYRAEDDSEKLLNPVRKTIGVMTSGGDSPGMNPFVRAVV-RAGIYKGCKVFCIHEGY 221
Query: 216 RGFCD------KELTEMPLSRKVVQNIHXXXXXXXXXXRGAPTVSEIVDSMEERGINMLF 269
G KE + +V+ R + +M + GI+ L
Sbjct: 222 EGLVRGGEKYIKETQWHDVRGWLVEGGTNIGTARCKEFRERSGRLKACKNMIDMGIDALI 281
Query: 270 VLGGNGTHAGAN-----------------AIHNECRKRRMKVAVVGVPKTIDNDILLMDK 312
V GG+G+ GA+ I + + + G +IDND+ D
Sbjct: 282 VCGGDGSLTGADRFRSEWPSLIEELLQTEQISQQQFNTHQNLNICGAVGSIDNDMSSTDA 341
Query: 313 TFGFDTAVEEAQRAINSAYIEAHSAYHGIG-IVKLMGRSSGYIAMHASLASGQIDICLIP 371
T G ++++ RAI+ YI+A + H IV++MGR G++ + A LA+ D LIP
Sbjct: 342 TIGAFSSLDRICRAID--YIDATANSHSRAFIVEVMGRHCGWLGLLAGLATSA-DYILIP 398
Query: 372 ESPFNLHGPNGVLRHL--KYLIETKGSAVVCVAEGA 405
E P + + + K+ K +V VAEGA
Sbjct: 399 EKPASSREWQDQMCDIVGKHRARGKRKTIVIVAEGA 434
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 79/174 (45%), Gaps = 17/174 (9%)
Query: 260 MEERGINMLFVLGGNGTHAGANAIHNECRKR----RMKVAVVGVPKTIDNDILLMDKTFG 315
E+ G + L ++GG ++H R R +++ +V +P TI N++ + + G
Sbjct: 658 FEKYGFDGLILVGG---FEAFISLHQLERARINYPSLRIPLVLIPATISNNVPGTEYSLG 714
Query: 316 FDTAVEEAQRAINSAYIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPF 375
DT + + A + + + +V++ G +SGYIA HA LA G I +PE
Sbjct: 715 SDTCLNSFMEYCDVIKQSAAATRNRVFVVEVQGGNSGYIATHAQLACGA-QISYVPEEGI 773
Query: 376 NLHGPNGVLRHLKYLI-----ETKGSAVVCVAEGAGQSLIKKTNAT----DASG 420
+L + LK +TK ++ +E A + L + +T +ASG
Sbjct: 774 SLAQLEMDINSLKESFANDQGKTKSGRLILKSENASKVLTTEVISTIIDDEASG 827
>pdb|3K2Q|A Chain A, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Marinobacter Aquaeolei,
Northeast Structural Genomics Consortium Target Mqr88
pdb|3K2Q|B Chain B, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Marinobacter Aquaeolei,
Northeast Structural Genomics Consortium Target Mqr88
pdb|3K2Q|C Chain C, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Marinobacter Aquaeolei,
Northeast Structural Genomics Consortium Target Mqr88
Length = 420
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 99/242 (40%), Gaps = 22/242 (9%)
Query: 256 IVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFG 315
+++ I F GG + A + + + +GVPKT+DND+ D G
Sbjct: 96 LIEVFRAHDIGYFFYNGGGDSQDTAYKVSQLADRMGYPITCIGVPKTVDNDLPFTDCCPG 155
Query: 316 FDTAVEEAQRAINSAYIEAHSAYH---GIGIVKLMGRSSGYIAMHASLASGQID-----I 367
F + + + A ++ S + I+++MGR +G+IA LA GQ + +
Sbjct: 156 FGSVAKYIATSTLEASLDIKSMCETSTKVFILEVMGRHAGWIAAAGGLA-GQSEGEPPHV 214
Query: 368 CLIPESPFNLHGPNGVLRHLKYLIETKGSAVVCVAEGAGQS---LIKKTNATDASGNIVL 424
L PE PFN L + + G VV +EGA + A DA G+ L
Sbjct: 215 ILFPEIPFNRE---KFLERVDQCVRDYGYCVVVASEGAQYEDGRFVADAGAKDAFGHTQL 271
Query: 425 GDVGVLIQQETKKYFKEIGVPIDVKYIDPTYMIRACR--ANASDGILCTVLGQNAVHGAF 482
G V + K+ + Y+ RA R A+A+D +G+ AV A
Sbjct: 272 GGVAPALANMVKQALGH-----KYHWAVADYLQRAARHIASATDVEQAYAVGKAAVEMAL 326
Query: 483 AG 484
AG
Sbjct: 327 AG 328
>pdb|1KZH|A Chain A, Structure Of A Pyrophosphate-dependent Phosphofructokinase
From The Lyme Disease Spirochete Borrelia Burgdorferi
pdb|1KZH|B Chain B, Structure Of A Pyrophosphate-dependent Phosphofructokinase
From The Lyme Disease Spirochete Borrelia Burgdorferi
pdb|2F48|A Chain A, Crystal Structure Of A Novel Fructose 1,6-Bisphosphate And
Alf3 Containing Pyrophosphate-Dependent
Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi
pdb|2F48|B Chain B, Crystal Structure Of A Novel Fructose 1,6-Bisphosphate And
Alf3 Containing Pyrophosphate-Dependent
Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi
Length = 555
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
Query: 261 EERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDIL--LMDKTFGFDT 318
+E +N + ++GG+ ++ A + +K + V+GVPKTID D+ ++ +FGFD+
Sbjct: 163 KENNLNAIIIIGGDDSNTNAAILAEYFKKNGENIQVIGVPKTIDADLRNDHIEISFGFDS 222
Query: 319 AVEEAQRAINSAYIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPE 372
A + I + +A S VKLMGRS+ ++A+ +L + +IC++ E
Sbjct: 223 ATKIYSELIGNLCRDAMSTKKYWHFVKLMGRSASHVALECALKT-HPNICIVSE 275
>pdb|3HNO|A Chain A, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Nitrosospira Multiformis.
Northeast Structural Genomics Consortium Target Id Nmr42
pdb|3HNO|B Chain B, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Nitrosospira Multiformis.
Northeast Structural Genomics Consortium Target Id Nmr42
pdb|3HNO|C Chain C, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Nitrosospira Multiformis.
Northeast Structural Genomics Consortium Target Id Nmr42
pdb|3HNO|D Chain D, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Nitrosospira Multiformis.
Northeast Structural Genomics Consortium Target Id Nmr42
Length = 419
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 93/209 (44%), Gaps = 24/209 (11%)
Query: 294 VAVVGVPKTIDNDILLMDKTFGFDT-----AVEEAQRAINSAYIEAHSAYHGIGIVKLMG 348
+ + VPKT+DND+ + D GF + AV + + + A + A S + ++++MG
Sbjct: 134 IQAIHVPKTVDNDLPITDCCPGFGSVAKYIAVSTLEASFDVASMSATST--KVFVLEVMG 191
Query: 349 RSSGYIAMHASLASG---QIDIC-LIPESPFNLHGPNGVLRHLKYLIETKGSAVVCVAEG 404
R +G+IA LAS +I + L PE F+ L + ++ G V V+EG
Sbjct: 192 RHAGWIAAAGGLASSPEREIPVVILFPEISFD---KQKFLAKVDSCVKKFGYCSVVVSEG 248
Query: 405 A---GQSLIKKTNATDASGNIVLGDVGVLIQQETKKYFKEIGVPIDVKYIDPTYMIRACR 461
+ DA G+ LG V ++ K+ G+ + + Y+ RA R
Sbjct: 249 VKGDDGKFLSDQGVRDAFGHAQLGGVAPVVASMVKE-----GLGLKYHWGVADYLQRAAR 303
Query: 462 --ANASDGILCTVLGQNAVHGAFAGFSGI 488
A+ +D +GQ AV A G + +
Sbjct: 304 HIASKTDVEQAYAMGQAAVEFAVQGHNSV 332
>pdb|3AI7|A Chain A, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|B Chain B, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|C Chain C, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|D Chain D, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|E Chain E, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|F Chain F, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|G Chain G, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|H Chain H, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
Length = 831
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 161 RAGPREEIYFKPEEVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRG 217
R+ P + F E+VK +V G PGLN +I HI + +G ++ + G+ G
Sbjct: 43 RSNPLMKEPFTREDVKHRLVGHWGTTPGLNFLIGHINRFIADHGQNTVIIMGPGHGG 99
>pdb|1V0D|A Chain A, Crystal Structure Of Caspase-Activated Dnase (Cad)
Length = 329
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 11/54 (20%)
Query: 89 RDATPIP-STFCLRMR-TPVTEDFADGYPSD---------EKWHGYINNNDRVL 131
R P+P S CL T VT+D G P+D E WHGY+++ R L
Sbjct: 39 RFQLPMPGSRLCLYEDGTEVTDDCFPGLPNDAELLLLTAGETWHGYVSDITRFL 92
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,567,729
Number of Sequences: 62578
Number of extensions: 713532
Number of successful extensions: 1975
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1918
Number of HSP's gapped (non-prelim): 29
length of query: 532
length of database: 14,973,337
effective HSP length: 103
effective length of query: 429
effective length of database: 8,527,803
effective search space: 3658427487
effective search space used: 3658427487
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)